##fileformat=VCFv4.1
##FORMAT=<ID=GQX,Number=1,Type=Integer,Description="Minimum of {Genotype quality assuming variant position,Genotype quality assuming non-variant position}">
##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth (reads with MQ=255 or with bad mates are filtered)">
##FORMAT=<ID=GQ,Number=1,Type=Float,Description="Genotype Quality">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=PL,Number=G,Type=Integer,Description="Normalized, Phred-scaled likelihoods for genotypes as defined in the VCF specification">
##FORMAT=<ID=MQ,Number=1,Type=Integer,Description="RMS Mapping Quality">
##FORMAT=<ID=VF,Number=1,Type=Float,Description="Variant Frequency, the ratio of the sum of the called variant depth to the total depth">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele count in genotypes, for each ALT allele, in the same order as listed">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency, for each ALT allele, in the same order as listed">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth; some reads may have been filtered">
##INFO=<ID=QD,Number=1,Type=Float,Description="Variant Confidence/Quality by Depth">
##INFO=<ID=BaseQRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt Vs. Ref base qualities">
##INFO=<ID=DS,Number=0,Type=Flag,Description="Were any of the samples downsampled?">
##INFO=<ID=Dels,Number=1,Type=Float,Description="Fraction of Reads Containing Spanning Deletions">
##INFO=<ID=FS,Number=1,Type=Float,Description="Phred-scaled p-value using Fisher's exact test to detect strand bias">
##INFO=<ID=HRun,Number=1,Type=Integer,Description="Largest Contiguous Homopolymer Run of Variant Allele In Either Direction">
##INFO=<ID=HaplotypeScore,Number=1,Type=Float,Description="Consistency of the site with at most two segregating haplotypes">
##INFO=<ID=InbreedingCoeff,Number=1,Type=Float,Description="Inbreeding coefficient as estimated from the genotype likelihoods per-sample when compared against the Hardy-Weinberg expectation">
##INFO=<ID=MQ,Number=1,Type=Float,Description="RMS Mapping Quality">
##INFO=<ID=MQ0,Number=1,Type=Integer,Description="Total Mapping Quality Zero Reads">
##INFO=<ID=MQRankSum,Number=1,Type=Float,Description="Z-score From Wilcoxon rank sum test of Alt vs. Ref read mapping qualities">
##INFO=<ID=ReadPosRankSum,Number=1,Type=Float,Description="Z-score from Wilcoxon rank sum test of Alt vs. Ref read position bias">
##INFO=<ID=SB,Number=1,Type=Float,Description="Strand Bias">
##INFO=<ID=END,Number=1,Type=Integer,Description="End position of the region described in this record">
##INFO=<ID=BLOCKAVG_min30p3a,Number=0,Type=Flag,Description="Non-variant site block. All sites in a block are constrained to be non-variant, have the same filter value, and have all sample values in range [x,y] , y <= max(x+3,(x*(1+0.3))). All printed site block sample values are the minimum observed in the region spanned by the block">
##FILTER=<ID=LowGQX,Description="Locus GQX is less than 30.0000 or not present">
##FILTER=<ID=LowQD,Description="Locus QD is less than 2.0000">
##FILTER=<ID=LowGQ,Description="GQ below < 30.00">
##FILTER=<ID=LowMQ,Description="Site MQ is less than 20.0000">
##FILTER=<ID=SB,Description="Strand bias (SB) is greater than than -10">
##FILTER=<ID=LowDP,Description="Depth (DP) is less than 1">
##FILTER=<ID=IndelConflict,Description="Locus is in region with conflicting indel calls.">
##FILTER=<ID=SiteConflict,Description="Site genotype conflicts with proximal indel call. This is typically a heterozygous SNV call made inside of a heterozygous deletion.">
##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[/data/scratch/workspace/RunFolder/Data/Intensities/BaseCalls/Alignment/15AC02301_S1.bam] read_buffer_size=null phone_home=NO_ET gatk_key=null read_filter=[] intervals=[/data/scratch/workspace/RunFolder/Data/Intensities/BaseCalls/Alignment/Segment_intervals_M1.0.picard] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/genomes/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/genome.fa nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=5000 baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false BQSR=null quantize_quals=-1 defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false logging_level=OFF log_to_file=null help=false genotype_likelihoods_model=BOTH p_nonref_model=EXACT heterozygosity=0.0010 pcr_error_rate=1.0E-4 genotyping_mode=DISCOVERY output_mode=EMIT_ALL_SITES standard_min_confidence_threshold_for_calling=1.0 standard_min_confidence_threshold_for_emitting=30.0 noSLOD=false annotateNDA=false alleles=(RodBinding name= source=UNBOUND) min_base_quality_score=17 max_deletion_fraction=0.05 max_alternate_alleles=3 min_indel_count_for_genotyping=5 min_indel_fraction_per_sample=0.25 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10 indelGapOpenPenalty=45 indelHaplotypeSize=80 noBandedIndel=false indelDebug=false ignoreSNPAlleles=false includeGVCFData=true dbsnp=(RodBinding name= source=UNBOUND) comp=[] out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub debug_file=null metrics_file=null annotation=[] excludeAnnotation=[] filter_mismatching_base_and_quals=false"
##contig=<ID=chr1,length=249250621>
##contig=<ID=chr10,length=135534747>
##contig=<ID=chr11,length=135006516>
##contig=<ID=chr12,length=133851895>
##contig=<ID=chr13,length=115169878>
##contig=<ID=chr14,length=107349540>
##contig=<ID=chr15,length=102531392>
##contig=<ID=chr16,length=90354753>
##contig=<ID=chr17,length=81195210>
##contig=<ID=chr18,length=78077248>
##contig=<ID=chr19,length=59128983>
##contig=<ID=chr2,length=243199373>
##contig=<ID=chr20,length=63025520>
##contig=<ID=chr21,length=48129895>
##contig=<ID=chr22,length=51304566>
##contig=<ID=chr3,length=198022430>
##contig=<ID=chr4,length=191154276>
##contig=<ID=chr5,length=180915260>
##contig=<ID=chr6,length=171115067>
##contig=<ID=chr7,length=159138663>
##contig=<ID=chr8,length=146364022>
##contig=<ID=chr9,length=141213431>
##contig=<ID=chrM,length=16571>
##contig=<ID=chrX,length=155270560>
##contig=<ID=chrY,length=59373566>
##reference=file:///genomes/Homo_sapiens/UCSC/hg19/Sequence/WholeGenomeFasta/genome.fa
##gvcftools_version="0.12"
##gvcftools_cmdline="/opt/illumina/Isis/2.5.41.27.Enrichment/Workflows/EnrichmentWorker/gatk_to_gvcf --no-default-filters --min-qd 2.0000 --min-gqx 30.0000 --min-mq 20.0000"
##source=GATK 1.6
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	15AC02301
chrM	3307	.	C	.	.	PASS	END=3309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chrM	3310	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:45:60
chrM	3311	.	C	.	.	PASS	END=3339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chrM	3340	.	A	.	.	PASS	END=3362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chrM	3363	.	T	.	.	PASS	END=3371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chrM	3372	.	T	.	.	PASS	END=3424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chrM	3425	.	G	.	.	PASS	END=3451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chrM	3452	.	T	.	.	PASS	END=3493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:59
chrM	3494	.	C	.	.	PASS	END=3523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:59
chrM	3524	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:36:59
chrM	3525	.	C	.	.	PASS	END=3532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:59
chrM	3533	.	A	.	62.13	PASS	DP=23;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:17:23:32.14:59:32
chrM	3534	.	C	.	.	PASS	END=3536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:39:59
chrM	3537	.	T	.	.	PASS	END=3544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:59
chrM	3545	.	A	.	.	PASS	END=3550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:36:60
chrM	3551	.	G	.	.	PASS	END=3554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chrM	3555	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:60
chrM	3556	.	T	.	.	PASS	END=3557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chrM	3558	.	T	.	.	PASS	END=3559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:33:60
chrM	3560	.	C	.	.	PASS	END=3563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chrM	3564	.	G	.	.	PASS	END=3565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chrM	3566	.	A	.	.	LowGQX	END=3568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:21:60
chrM	3569	.	C	.	.	PASS	END=3572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chrM	3573	.	T	.	.	PASS	END=3580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chrM	3581	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chrM	3582	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chrM	3583	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chrM	3584	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chrM	3585	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chrM	3586	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chrM	3587	.	C	.	.	PASS	END=3597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chrM	3598	.	C	.	.	PASS	END=3602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chrM	3603	.	A	.	.	PASS	END=3629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chrM	3630	.	C	.	.	PASS	END=3639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chrM	3640	.	A	.	.	PASS	END=3655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chrM	3656	.	C	.	.	PASS	END=3668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chrM	3669	.	G	.	.	PASS	END=3698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chrM	3699	.	G	.	.	PASS	END=3747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chrM	3748	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:33:60
chrM	3749	.	A	.	.	PASS	END=3792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chrM	3793	.	C	.	.	PASS	END=3815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chrM	3816	.	A	.	.	PASS	END=3844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chrM	3845	.	C	.	.	PASS	END=3889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chrM	3890	.	C	.	.	PASS	END=3910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chrM	3911	.	G	.	.	PASS	END=3921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:59
chrM	3922	.	C	A	818.01	PASS	DP=29;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=59;MQ0=0;QD=28.21;SB=-411.96	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,29:29:63.21:851,63,0:59:63:1.000
chrM	3923	.	G	.	.	PASS	END=3976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:55
chrM	3977	.	T	.	.	PASS	END=4038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:54
chrM	4039	.	A	.	.	PASS	END=4096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:53
chrM	4097	.	C	.	.	PASS	END=4114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:53
chrM	4115	.	T	.	.	PASS	END=4126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:52
chrM	4127	.	C	.	.	PASS	END=4143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:51
chrM	4144	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:51
chrM	4145	.	T	.	.	PASS	END=4146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:51
chrM	4147	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:51
chrM	4148	.	C	.	.	PASS	END=4154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:51
chrM	4155	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:21:51
chrM	4156	.	C	.	.	PASS	END=4165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:50
chrM	4166	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:50
chrM	4167	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:50
chrM	4168	.	C	.	.	LowGQX	END=4174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:48
chrM	4175	.	T	.	.	PASS	END=4177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:48
chrM	4178	.	A	.	.	LowGQX	END=4179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:48
chrM	4180	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:48
chrM	4181	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:48
chrM	4182	.	A	.	.	PASS	END=4185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:48
chrM	4186	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:48
chrM	4187	.	C	.	.	PASS	END=4189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:46
chrM	4190	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:46
chrM	4191	.	C	.	.	PASS	END=4192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:46
chrM	4193	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:46
chrM	4194	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:46
chrM	4195	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:46
chrM	4196	.	A	.	.	PASS	END=4197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:46
chrM	4198	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:48
chrM	4199	.	C	.	.	PASS	END=4205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:48
chrM	4206	.	T	.	.	LowGQX	END=4220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:48
chrM	4221	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:52
chrM	4222	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:53
chrM	4223	.	T	.	.	LowGQX	END=4234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:53
chrM	4235	.	A	.	.	PASS	END=4236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:53
chrM	4237	.	A	.	.	LowGQX	END=4244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:53
chrM	4245	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:54
chrM	4246	.	C	.	.	LowGQX	END=4250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:54
chrM	4251	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:54
chrM	4252	.	C	.	.	LowGQX	END=4256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:56
chrM	4257	.	A	.	.	PASS	END=4258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:56
chrM	4259	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:56
chrM	4260	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:56
chrM	4261	.	C	.	.	LowGQX	END=4262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:56
chrM	4470	.	A	.	.	PASS	END=4474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:43
chrM	4475	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:43
chrM	4476	.	T	.	.	PASS	END=4477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:43
chrM	4478	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:43
chrM	4479	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:43
chrM	4480	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:43
chrM	4481	.	T	.	.	PASS	END=4483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:43
chrM	4484	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:43
chrM	4485	.	C	.	.	PASS	END=4496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:41
chrM	4497	.	C	.	.	LowGQX	END=4498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:40
chrM	4499	.	A	.	.	PASS	END=4502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:38
chrM	4503	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:38
chrM	4504	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:38
chrM	4505	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:38
chrM	4506	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:38
chrM	4507	.	A	.	.	LowGQX	END=4515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:37
chrM	4516	.	G	.	.	LowGQX	END=4517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:37
chrM	4518	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:1:37
chrM	4519	.	A	.	.	LowGQX	END=4532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:34
chrM	4533	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:34
chrM	4534	.	C	.	.	LowGQX	END=4539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:34
chrM	4540	.	T	.	.	LowGQX	END=4551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:12:29
chrM	4552	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:29
chrM	4553	.	T	.	.	LowGQX	END=4560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:15:29
chrM	4561	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:12:29
chrM	4562	.	T	.	.	LowGQX	END=4585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:15:24
chrM	4586	.	C	.	.	LowGQX	END=4591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:18:25
chrM	4592	.	T	.	.	LowGQX	END=4594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:24:26
chrM	4595	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:18:26
chrM	4596	.	A	.	.	LowGQX	END=4601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:21:24
chrM	4602	.	A	.	.	LowGQX	END=4609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:18:24
chrM	4610	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:15:24
chrM	4611	.	A	.	.	LowGQX	END=4614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:21:24
chrM	4615	.	A	.	.	LowGQX	END=4616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:15:24
chrM	4617	.	C	.	.	LowGQX	END=4624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:18:23
chrM	4625	.	C	.	.	LowGQX	END=4630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:15:23
chrM	4631	.	A	.	.	LowGQX	END=4634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:18:25
chrM	4635	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:12:25
chrM	4636	.	G	.	.	LowGQX	END=4657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:18:27
chrM	4658	.	A	.	.	LowGQX	END=4660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:15:28
chrM	4661	.	C	.	.	LowGQX	END=4668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:18:28
chrM	4669	.	T	.	.	LowGQX	END=4673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:24:32
chrM	4674	.	A	.	.	PASS	END=4675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:34
chrM	4676	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:34
chrM	4677	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:34
chrM	4678	.	C	.	.	LowGQX	END=4679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:27:35
chrM	4680	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:35
chrM	4681	.	C	.	.	LowGQX	END=4682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:35
chrM	4683	.	A	.	.	PASS	END=4692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:35
chrM	4693	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:37
chrM	4694	.	T	.	.	PASS	END=4699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:37
chrM	4700	.	A	.	.	PASS	END=4718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:38
chrM	4719	.	A	.	.	PASS	END=4733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:43
chrM	4734	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:16:46
chrM	4735	.	A	.	.	PASS	END=4753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:46
chrM	4754	.	C	.	.	PASS	END=4757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:49
chrM	4758	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:33:49
chrM	4759	.	A	.	.	PASS	END=4771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:47
chrM	4772	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:20:47
chrM	4773	.	T	.	.	PASS	END=4785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:47
chrM	4786	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:36:49
chrM	4787	.	T	.	.	PASS	END=4806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:39:49
chrM	4807	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:22:49
chrM	4808	.	T	.	.	PASS	END=4833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:50
chrM	4834	.	A	.	.	PASS	END=4837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:39:53
chrM	4838	.	C	.	.	PASS	END=4850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:53
chrM	4851	.	C	.	.	PASS	END=4858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:54
chrM	4859	.	T	.	.	PASS	END=4874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:57
chrM	4875	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:1:57
chrM	4876	.	C	.	.	PASS	END=4881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:57
chrM	4882	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:57
chrM	4883	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:57
chrM	4884	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:24:57
chrM	4885	.	A	.	.	PASS	END=4892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:57
chrM	4893	.	C	.	.	LowGQX	END=4895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:60
chrM	4896	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chrM	4897	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chrM	4898	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chrM	4899	.	C	.	.	LowGQX	END=4903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:60
chrM	4904	.	T	.	.	PASS	END=4905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chrM	4906	.	T	.	.	LowGQX	END=4907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chrM	4908	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:0:60
chrM	4909	.	C	.	.	LowGQX	END=4912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:60
chrM	4913	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chrM	4914	.	A	.	.	LowGQX	END=4916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:27:60
chrM	4917	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chrM	4918	.	A	.	.	LowGQX	END=4919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:60
chrM	4920	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chrM	4921	.	G	.	.	LowGQX	END=4922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chrM	4923	.	A	.	.	PASS	END=4927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chrM	4928	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chrM	4929	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:60
chrM	4930	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chrM	4931	.	T	.	.	PASS	END=4947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chrM	4948	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chrM	4949	.	T	.	.	PASS	END=4960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chrM	4961	.	C	T	493.46	PASS	DP=19;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=25.97;SB=-304.95	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,19:19:39.13:526,39,0:60:39:1.000
chrM	4962	.	A	.	.	PASS	END=4967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chrM	4968	.	T	C	483.44	PASS	DP=18;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=26.86;SB=-257.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,18:18:39.12:516,39,0:60:39:1.000
chrM	4969	.	T	.	.	PASS	END=4973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chrM	4974	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:60
chrM	4975	.	G	.	.	PASS	END=4985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chrM	4986	.	A	.	.	LowGQX	END=4994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:59
chrM	4995	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:59
chrM	4996	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:0:59
chrM	4997	.	G	.	.	PASS	END=5004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:59
chrM	5005	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:59
chrM	5006	.	T	.	.	PASS	END=5007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:59
chrM	5008	.	G	.	.	LowGQX	END=5009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:59
chrM	5010	.	A	.	.	PASS	END=5013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:59
chrM	5014	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:59
chrM	5015	.	C	.	.	PASS	END=5016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:59
chrM	5017	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:59
chrM	5018	.	C	.	.	PASS	END=5020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:58
chrM	5021	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:58
chrM	5022	.	T	.	.	PASS	END=5025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:58
chrM	5026	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:58
chrM	5027	.	A	.	.	PASS	END=5028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:58
chrM	5029	.	A	.	.	PASS	END=5035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:58
chrM	5036	.	G	.	.	PASS	END=5056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:57
chrM	5057	.	A	.	.	PASS	END=5060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:33:56
chrM	5061	.	C	.	.	PASS	END=5074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:55
chrM	5075	.	T	.	.	PASS	END=5097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:54
chrM	5098	.	A	.	.	PASS	END=5108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:51
chrM	5109	.	T	.	.	PASS	END=5203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:44
chrM	5204	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:43
chrM	5205	.	A	.	.	PASS	END=5206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:43
chrM	5207	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:43
chrM	5208	.	C	.	.	PASS	END=5214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:43
chrM	5215	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:43
chrM	5216	.	T	.	.	PASS	END=5217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:44
chrM	5218	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:44
chrM	5219	.	C	.	.	PASS	END=5239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:47
chrM	5240	.	T	.	.	PASS	END=5299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:48
chrM	5300	.	T	.	.	PASS	END=5308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:52
chrM	5309	.	C	.	.	PASS	END=5356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:53
chrM	5357	.	T	.	.	PASS	END=5368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chrM	5369	.	C	.	.	PASS	END=5433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:59
chrM	5434	.	C	.	.	PASS	END=5458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:54
chrM	5459	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:24:54
chrM	5460	.	C	.	.	PASS	END=5471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:52
chrM	5472	.	G	A	651.62	PASS	DP=27;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=51;MQ0=0;QD=24.13;SB=-438.93	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,27:27:51.16:685,51,0:51:51:1.000
chrM	5473	.	C	.	.	PASS	END=5511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:47
chrM	5904	.	G	.	.	PASS	END=5911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:40
chrM	5912	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:0:40
chrM	5913	.	C	.	.	PASS	END=5955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:39
chrM	5956	.	C	.	.	PASS	END=5971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:39:38
chrM	5972	.	G	.	.	PASS	END=5987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:38
chrM	5988	.	C	.	.	PASS	END=6018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:40
chrM	6019	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:39:43
chrM	6020	.	C	.	.	PASS	END=6055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:38
chrM	6056	.	A	.	.	PASS	END=6059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:39
chrM	6060	.	C	.	.	PASS	END=6062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:38
chrM	6063	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:9:38
chrM	6064	.	T	.	.	PASS	END=6082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:35
chrM	6083	.	C	.	.	PASS	END=6095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:39:36
chrM	6096	.	A	.	.	PASS	END=6151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:42:37
chrM	6152	.	T	.	.	PASS	END=6167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:43
chrM	6168	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:36:45
chrM	6169	.	G	.	.	PASS	END=6183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:45
chrM	6184	.	T	.	.	PASS	END=6185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:36:47
chrM	6186	.	T	.	.	PASS	END=6228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:47
chrM	6229	.	C	.	.	PASS	END=6239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:57
chrM	6240	.	G	.	.	PASS	END=6250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:59
chrM	6251	.	C	.	.	PASS	END=6284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chrM	6285	.	A	.	.	PASS	END=6294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chrM	6295	.	C	.	.	PASS	END=6435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:59
chrM	6436	.	C	.	.	PASS	END=6453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chrM	6454	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:39:60
chrM	6455	.	T	.	.	PASS	END=6508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chrM	6509	.	T	.	.	PASS	END=6538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chrM	6539	.	A	.	.	PASS	END=6558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chrM	6559	.	T	.	.	PASS	END=6565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chrM	6566	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:51:60
chrM	6567	.	C	.	.	PASS	END=6588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chrM	6589	.	A	.	.	PASS	END=6722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:55
chrM	6723	.	G	.	.	PASS	END=6734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:53
chrM	6735	.	G	.	.	PASS	END=6761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:47
chrM	6762	.	C	.	.	PASS	END=6803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:37
chrM	6804	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:12:37
chrM	6805	.	A	.	.	PASS	END=6839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:36:34
chrM	6840	.	C	.	.	PASS	END=6869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:43
chrM	6870	.	C	.	.	PASS	END=6878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:36:49
chrM	6879	.	C	.	.	PASS	END=6913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:39:50
chrM	6914	.	C	.	.	PASS	END=6972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:53
chrM	6973	.	G	.	.	PASS	END=6998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:51
chrM	6999	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:18:51
chrM	7000	.	G	.	.	PASS	END=7027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:50
chrM	7028	.	C	.	.	PASS	END=7086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:49
chrM	7087	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:10:51
chrM	7088	.	A	.	.	PASS	END=7098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:51
chrM	7099	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:22:52
chrM	7100	.	T	.	.	PASS	END=7113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:52
chrM	7114	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:39:55
chrM	7115	.	C	.	.	PASS	END=7153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:55
chrM	7154	.	T	.	.	PASS	END=7208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:57
chrM	7209	.	A	.	.	PASS	END=7217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:59
chrM	7218	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:51:59
chrM	7219	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:12:59
chrM	7220	.	G	.	.	PASS	END=7230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:59
chrM	7231	.	T	.	.	PASS	END=7244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chrM	7245	.	C	.	.	PASS	END=7254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chrM	7255	.	A	.	.	PASS	END=7256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:59
chrM	7257	.	C	.	.	PASS	END=7278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:56
chrM	7279	.	T	C	579.02	LowGQ;LowGQX	BaseQRankSum=1.067;DP=26;Dels=0.00;FS=3.388;HRun=0;HaplotypeScore=1.8938;MQ=56;MQ0=0;MQRankSum=-0.933;QD=22.27;ReadPosRankSum=0.000;SB=-352.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,25:26:19.60:612,20,0:56:20:0.962
chrM	7280	.	T	.	.	PASS	END=7337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:54
chrM	7338	.	G	.	.	PASS	END=7354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:53
chrM	7355	.	T	.	.	PASS	END=7367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:51
chrM	7368	.	C	.	.	PASS	END=7379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:49
chrM	7380	.	G	.	.	PASS	END=7395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:45
chrM	7396	.	T	.	.	PASS	END=7406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:44
chrM	7407	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:43
chrM	7408	.	T	.	.	LowGQX	END=7409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:43
chrM	7410	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:42
chrM	7411	.	C	.	.	LowGQX	END=7412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:42
chrM	7413	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:42
chrM	7414	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:41
chrM	7415	.	C	.	.	LowGQX	END=7416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:41
chrM	7417	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:41
chrM	7418	.	T	.	.	LowGQX	END=7420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:41
chrM	7421	.	A	.	.	LowGQX	END=7427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:41
chrM	7428	.	C	.	.	LowGQX	END=7429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:41
chrM	7430	.	T	.	.	LowGQX	END=7433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:41
chrM	7434	.	C	.	.	LowGQX	END=7435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:39
chrM	7436	.	T	.	.	LowGQX	END=7439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:39
chrM	7440	.	A	.	.	LowGQX	END=7442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:39
chrM	7443	.	T	.	.	LowGQX	END=7444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:41
chrM	7445	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:41
chrM	7586	.	A	.	.	PASS	END=7609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:47
chrM	7610	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:48
chrM	7611	.	C	.	.	PASS	END=7632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:48
chrM	7633	.	T	.	.	PASS	END=7642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:53
chrM	7643	.	G	.	.	PASS	END=7659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:55
chrM	7660	.	A	.	.	PASS	END=7735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:55
chrM	7736	.	A	.	.	PASS	END=7779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:55
chrM	7780	.	G	.	.	PASS	END=7824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:56
chrM	7825	.	C	.	.	PASS	END=7873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:58
chrM	7874	.	C	.	.	PASS	END=7892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:42:60
chrM	7893	.	C	.	.	PASS	END=7909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:60
chrM	7910	.	C	.	.	PASS	END=7928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:59
chrM	7929	.	G	.	.	PASS	END=7951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:59
chrM	7952	.	A	.	.	PASS	END=7955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:59
chrM	7956	.	C	.	.	PASS	END=7987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:58
chrM	7988	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:33:59
chrM	7989	.	C	.	.	PASS	END=8012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:59
chrM	8013	.	G	.	.	PASS	END=8056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:42:59
chrM	8057	.	A	.	.	PASS	END=8059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:39:59
chrM	8060	.	C	.	.	PASS	END=8061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:59
chrM	8062	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:33:59
chrM	8063	.	C	.	.	PASS	END=8066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:59
chrM	8067	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:6:60
chrM	8068	.	A	.	.	PASS	END=8073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chrM	8074	.	G	.	.	PASS	END=8075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:33:60
chrM	8076	.	G	.	.	PASS	END=8079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chrM	8080	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:60
chrM	8081	.	C	.	.	PASS	END=8089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chrM	8090	.	A	.	.	PASS	END=8096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chrM	8097	.	A	.	.	PASS	END=8103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chrM	8104	.	A	.	.	PASS	END=8106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chrM	8107	.	C	.	.	PASS	END=8122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chrM	8123	.	A	.	.	PASS	END=8126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chrM	8127	.	C	.	.	PASS	END=8134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chrM	8135	.	T	.	.	PASS	END=8138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chrM	8139	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:39:60
chrM	8140	.	C	.	.	PASS	END=8149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chrM	8150	.	A	.	.	PASS	END=8184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chrM	8185	.	G	.	.	PASS	END=8251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:57
chrM	8252	.	G	A	504.10	PASS	DP=23;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7346;MQ=57;MQ0=0;QD=21.92;SB=-311.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,22:23:42.13:537,42,0:57:42:1.000
chrM	8253	.	C	.	.	PASS	END=8266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:56
chrM	8366	.	A	.	.	PASS	END=8385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:48
chrM	8386	.	C	.	.	PASS	END=8397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:50
chrM	8398	.	C	.	.	PASS	END=8421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:53
chrM	8422	.	C	.	.	PASS	END=8434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:56
chrM	8435	.	C	.	.	PASS	END=8460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:58
chrM	8461	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:34:24:60
chrM	8462	.	C	.	.	PASS	END=8472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chrM	8473	.	C	T	809.17	PASS	DP=36;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.8408;MQ=60;MQ0=0;QD=22.48;SB=-536.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,36:36:60.20:842,60,0:60:60:1.000
chrM	8474	.	T	.	.	PASS	END=8558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:59
chrM	8559	.	C	.	.	PASS	END=8575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:59
chrM	8576	.	C	.	.	PASS	END=8582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:59
chrM	8583	.	C	.	.	PASS	END=8597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:57
chrM	8598	.	T	.	.	PASS	END=8607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:56
chrM	8608	.	C	.	.	PASS	END=8609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:56
chrM	8610	.	C	.	.	PASS	END=8620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:56
chrM	8621	.	C	.	.	PASS	END=8660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:55
chrM	8661	.	C	.	.	PASS	END=8665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chrM	8666	.	C	.	.	PASS	END=8683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:58
chrM	8684	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:39:58
chrM	8685	.	C	.	.	PASS	END=8701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:58
chrM	8702	.	G	A	639.81	PASS	DP=25;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=57;MQ0=0;QD=25.59;SB=-353.84	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,24:25:51.16:673,51,0:57:51:1.000
chrM	8703	.	C	.	.	PASS	END=8724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:55
chrM	8725	.	A	.	.	PASS	END=8732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:54
chrM	8733	.	C	.	.	PASS	END=8786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:47
chrM	8787	.	T	.	.	PASS	END=8800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:46
chrM	8801	.	T	.	.	PASS	END=8823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:38
chrM	8824	.	T	.	.	PASS	END=8831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:37
chrM	8832	.	T	.	.	PASS	END=8836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:36
chrM	8837	.	A	G	393.91	PASS	DP=17;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=36;MQ0=4;QD=23.17;SB=-180.99	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,17:17:33.10:427,33,0:36:33:1.000
chrM	8838	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:2:36
chrM	8839	.	G	.	.	PASS	END=8860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:35
chrM	8861	.	G	.	.	PASS	END=8866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:39
chrM	8867	.	A	.	.	PASS	END=8907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:40
chrM	8908	.	C	.	.	PASS	END=8927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:43
chrM	8928	.	C	.	.	PASS	END=8948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:48
chrM	8949	.	T	.	.	PASS	END=8950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:51
chrM	8951	.	G	.	.	PASS	END=8978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:51
chrM	8979	.	T	.	.	PASS	END=8995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:53
chrM	8996	.	G	.	.	PASS	END=9026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:55
chrM	9027	.	G	.	.	PASS	END=9029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:57
chrM	9030	.	A	.	.	PASS	END=9034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:58
chrM	9035	.	C	.	.	PASS	END=9059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:58
chrM	9060	.	C	.	.	PASS	END=9072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:59
chrM	9073	.	A	.	.	PASS	END=9075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:59
chrM	9076	.	C	.	.	PASS	END=9191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:56
chrM	9192	.	T	.	.	PASS	END=9204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:63:56
chrM	9207	.	A	.	.	PASS	END=9212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:56
chrM	9213	.	C	.	.	PASS	END=9255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:56
chrM	9256	.	C	.	.	PASS	END=9303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:55
chrM	9304	.	A	.	.	PASS	END=9322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:55
chrM	9323	.	C	.	.	PASS	END=9330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:55
chrM	9331	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:21:55
chrM	9332	.	T	.	.	PASS	END=9335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:54
chrM	9336	.	C	T	862.27	PASS	DP=33;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=54;MQ0=1;QD=26.13;SB=-547.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,33:33:66.21:895,66,0:54:66:1.000
chrM	9337	.	A	.	.	PASS	END=9344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:52
chrM	9345	.	C	.	.	PASS	END=9364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:50
chrM	9365	.	C	.	.	PASS	END=9377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:41
chrM	9378	.	G	A	699.54	PASS	DP=34;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=41;MQ0=8;QD=20.57;SB=-300.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,34:34:54.18:733,54,0:41:54:1.000
chrM	9379	.	T	.	.	PASS	END=9405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:51:40
chrM	9406	.	T	.	.	PASS	END=9421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:69:46
chrM	9422	.	C	.	.	PASS	END=9452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:75:47
chrM	9453	.	G	A	1123.34	PASS	DP=47;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=48;MQ0=8;QD=23.90;SB=-618.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,47:47:87.28:1156,87,0:48:87:1.000
chrM	9454	.	A	.	.	PASS	END=9475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:75:48
chrM	9476	.	A	.	.	PASS	END=9515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:69:49
chrM	9516	.	C	.	.	PASS	END=9530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:53
chrM	9531	.	T	.	.	PASS	END=9532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:54:58
chrM	9533	.	C	.	.	PASS	END=9540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:59
chrM	9541	.	C	T	702.11	PASS	DP=29;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=12.3099;MQ=60;MQ0=0;QD=24.21;SB=-78.64	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,29:29:57.18:735,57,0:60:57:1.000
chrM	9542	.	T	.	.	PASS	END=9550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chrM	9551	.	A	.	84.17	PASS	DP=27;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:21:27:54.18:60:54
chrM	9552	.	C	.	.	PASS	END=9573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:59
chrM	9574	.	C	.	.	PASS	END=9588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:58
chrM	9589	.	G	.	.	PASS	END=9597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:58
chrM	9598	.	C	.	.	PASS	END=9611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:55
chrM	9612	.	C	.	.	PASS	END=9625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:53
chrM	9626	.	C	.	.	PASS	END=9631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:53
chrM	9632	.	T	.	.	PASS	END=9650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:52
chrM	9651	.	C	.	.	PASS	END=9666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:52
chrM	9667	.	A	.	.	PASS	END=9670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:52
chrM	9671	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:52
chrM	9672	.	C	.	.	PASS	END=9685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:52
chrM	9686	.	T	.	.	PASS	END=9710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:52
chrM	9711	.	A	.	.	PASS	END=9743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:53
chrM	9744	.	A	.	.	PASS	END=9748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:56
chrM	9749	.	A	.	.	PASS	END=9780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:59
chrM	9781	.	A	.	.	PASS	END=9813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chrM	9814	.	T	.	.	PASS	END=9832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chrM	9833	.	T	.	.	PASS	END=9848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chrM	9849	.	C	.	.	PASS	END=9909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chrM	9910	.	T	.	.	PASS	END=9949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chrM	9950	.	T	.	.	PASS	END=9967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chrM	9968	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:60
chrM	9969	.	C	.	.	PASS	END=9983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chrM	9984	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chrM	9985	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chrM	9986	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chrM	9987	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:36:60
chrM	9988	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chrM	9989	.	C	.	.	PASS	END=9990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chrM	10059	.	A	.	.	PASS	END=10092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chrM	10093	.	C	.	.	PASS	END=10101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chrM	10102	.	T	.	.	PASS	END=10128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chrM	10129	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:1:60
chrM	10130	.	T	.	.	PASS	END=10157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chrM	10158	.	A	.	.	PASS	END=10165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chrM	10166	.	C	.	.	PASS	END=10173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chrM	10174	.	T	.	.	PASS	END=10177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chrM	10178	.	G	.	.	PASS	END=10183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chrM	10184	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:60
chrM	10185	.	C	.	.	PASS	END=10200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chrM	10201	.	C	.	.	PASS	END=10211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chrM	10212	.	C	.	.	PASS	END=10222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chrM	10223	.	T	.	.	PASS	END=10238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chrM	10239	.	T	C	700.96	PASS	DP=24;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=29.21;SB=-421.52	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,24:24:54.18:734,54,0:60:54:1.000
chrM	10240	.	A	.	.	PASS	END=10243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chrM	10244	.	T	.	.	PASS	END=10289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:58
chrM	10290	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:13:59
chrM	10291	.	G	.	.	PASS	END=10294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:58
chrM	10295	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:24:58
chrM	10296	.	A	.	.	PASS	END=10311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:58
chrM	10312	.	C	.	.	PASS	END=10349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:58
chrM	10350	.	C	.	.	PASS	END=10398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:59
chrM	10399	.	G	A	616.92	PASS	DP=24;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=25.70;SB=-344.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,24:24:48.16:650,48,0:60:48:1.000
chrM	10400	.	C	.	.	PASS	END=10404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chrM	10470	.	A	.	.	PASS	END=10529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chrM	10530	.	A	.	.	PASS	END=10554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chrM	10555	.	T	.	.	PASS	END=10601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chrM	10602	.	T	.	.	PASS	END=10646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chrM	10647	.	G	.	.	PASS	END=10671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chrM	10672	.	G	.	.	PASS	END=10691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:60
chrM	10692	.	C	.	.	PASS	END=10700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chrM	10701	.	A	.	.	PASS	END=10746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chrM	10747	.	C	.	.	PASS	END=10756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chrM	10757	.	T	.	.	PASS	END=10811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chrM	10812	.	T	.	.	PASS	END=10819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chrM	10820	.	G	A	787.38	PASS	DP=30;Dels=0.00;FS=0.000;HRun=5;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=26.25;SB=-544.04	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,30:30:60.20:820,60,0:60:60:1.000
chrM	10821	.	C	.	.	PASS	END=10837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:60
chrM	10838	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:63:60
chrM	10839	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:32:60
chrM	10840	.	C	.	.	PASS	END=10850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chrM	10851	.	A	.	.	PASS	END=10873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chrM	10874	.	C	T	632.08	PASS	DP=22;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=28.73;SB=-330.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,22:22:51.16:665,51,0:60:51:1.000
chrM	10875	.	C	.	.	PASS	END=10883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chrM	10884	.	T	.	.	PASS	END=10916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chrM	10917	.	T	.	.	PASS	END=10925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chrM	10926	.	T	.	.	LowGQX	END=10929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:60
chrM	10930	.	C	.	.	PASS	END=10931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chrM	10932	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chrM	10933	.	C	.	.	PASS	END=10935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chrM	10936	.	A	.	.	PASS	END=10937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chrM	10938	.	C	.	.	LowGQX	END=10939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chrM	10940	.	C	.	.	PASS	END=10943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chrM	10944	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chrM	10945	.	C	.	.	PASS	END=10946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chrM	10947	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chrM	10948	.	C	.	.	PASS	END=10953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chrM	10954	.	T	.	.	PASS	END=10959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chrM	10960	.	T	.	.	PASS	END=10975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chrM	10976	.	C	.	.	PASS	END=10981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chrM	10982	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:60:60
chrM	10983	.	C	.	.	PASS	END=11005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chrM	11006	.	C	.	.	PASS	END=11017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chrM	11018	.	C	T	643.06	PASS	DP=23;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;QD=27.96;SB=-224.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,22:23:51.17:676,51,0:60:51:1.000
chrM	11019	.	G	.	.	PASS	END=11046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chrM	11047	.	T	.	.	PASS	END=11094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chrM	11095	.	C	.	.	PASS	END=11156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chrM	11157	.	A	.	.	PASS	END=11199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chrM	11200	.	C	.	.	PASS	END=11230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chrM	11231	.	C	.	.	PASS	END=11248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chrM	11249	.	A	.	.	PASS	END=11264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chrM	11265	.	A	.	.	PASS	END=11281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chrM	11282	.	A	.	.	PASS	END=11316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chrM	11317	.	T	.	.	LowGQX	END=11331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chrM	11332	.	C	.	.	PASS	END=11342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chrM	11343	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chrM	11344	.	T	.	.	PASS	END=11350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chrM	11351	.	A	.	.	PASS	END=11362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chrM	11363	.	A	G	426.73	PASS	DP=16;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=26.67;SB=-218.57	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,16:16:33.11:460,33,0:60:33:1.000
chrM	11364	.	G	.	.	PASS	END=11395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chrM	11396	.	C	.	.	PASS	END=11407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chrM	11408	.	C	.	.	PASS	END=11442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:45:60
chrM	11443	.	C	.	.	PASS	END=11503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:54:60
chrM	11504	.	C	.	.	PASS	END=11542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chrM	11543	.	C	.	.	PASS	END=11555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chrM	11556	.	C	.	.	PASS	END=11563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chrM	11564	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:33:60
chrM	11565	.	A	.	.	PASS	END=11588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chrM	11589	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:33:60
chrM	11590	.	T	.	.	PASS	END=11634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:58
chrM	11635	.	G	.	.	PASS	END=11692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:63:57
chrM	11693	.	C	.	.	PASS	END=11720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:56
chrM	11721	.	C	.	.	PASS	END=11722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:57
chrM	11723	.	C	T	994.85	PASS	DP=37;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=57;MQ0=0;QD=26.89;SB=-613.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,37:37:75.25:1028,75,0:57:75:1.000
chrM	11724	.	A	.	.	PASS	END=11747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:57
chrM	11748	.	G	.	.	PASS	END=11837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chrM	11838	.	C	.	.	PASS	END=11861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chrM	11862	.	G	.	.	PASS	END=11868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chrM	11869	.	C	.	.	PASS	END=11907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chrM	11908	.	T	.	.	PASS	END=11915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chrM	11916	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chrM	11917	.	T	.	.	PASS	END=11961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chrM	11962	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:21:60
chrM	11963	.	A	.	.	PASS	END=11970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chrM	11971	.	C	.	.	PASS	END=11979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chrM	11980	.	C	.	.	PASS	END=12000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chrM	12001	.	C	.	.	PASS	END=12007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chrM	12008	.	G	A	774.83	PASS	DP=28;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.9466;MQ=60;MQ0=0;QD=27.67;SB=-373.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,28:28:63.19:808,63,0:60:63:1.000
chrM	12009	.	G	.	.	PASS	END=12017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chrM	12018	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:24:60
chrM	12019	.	C	.	.	PASS	END=12040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chrM	12041	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:31:60
chrM	12042	.	C	.	.	PASS	END=12050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chrM	12051	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:38:60
chrM	12052	.	C	.	.	PASS	END=12078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chrM	12079	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:38:60
chrM	12080	.	C	.	.	PASS	END=12095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chrM	12096	.	C	.	.	PASS	END=12121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chrM	12122	.	T	.	.	PASS	END=12137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chrM	12337	.	A	.	.	PASS	END=12352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chrM	12353	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:72:60
chrM	12354	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:33:60
chrM	12355	.	T	.	.	PASS	END=12361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chrM	12362	.	A	.	.	PASS	END=12373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chrM	12374	.	A	.	.	PASS	END=12377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chrM	12378	.	C	.	.	PASS	END=12385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chrM	12386	.	C	.	46.44	LowGQX	DP=23;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:18:23:16.44:60:16
chrM	12387	.	C	.	.	PASS	END=12388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chrM	12389	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:39:60
chrM	12390	.	C	.	.	PASS	END=12404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:60
chrM	12405	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:42:60
chrM	12406	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:57:60
chrM	12407	.	G	.	.	PASS	END=12411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:42:60
chrM	12412	.	C	.	.	PASS	END=12415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chrM	12416	.	A	.	.	PASS	END=12429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:42:60
chrM	12430	.	A	.	.	PASS	END=12437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:45:60
chrM	12438	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:60:60
chrM	12439	.	T	.	.	PASS	END=12456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chrM	12457	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:9:60
chrM	12458	.	G	.	.	PASS	END=12473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:60
chrM	12474	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:57:60
chrM	12475	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:28:60
chrM	12476	.	A	.	.	PASS	END=12501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:60
chrM	12502	.	G	A	700.96	PASS	DP=25;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=8.5223;MQ=60;MQ0=0;QD=28.04;SB=-300.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,25:25:54.18:734,54,0:60:54:1.000
chrM	12503	.	T	.	.	PASS	END=12517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chrM	12518	.	G	.	.	PASS	END=12553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chrM	12554	.	A	.	.	PASS	END=12561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chrM	12562	.	G	.	.	PASS	END=12565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chrM	12566	.	T	.	.	PASS	END=12568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chrM	12569	.	C	.	.	PASS	END=12613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chrM	12614	.	G	.	.	PASS	END=12629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chrM	12630	.	G	.	.	PASS	END=12656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chrM	12657	.	A	.	.	PASS	END=12668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chrM	12669	.	A	.	.	PASS	END=12684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chrM	12685	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:18:60
chrM	12686	.	T	.	.	PASS	END=12750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chrM	12751	.	C	.	.	PASS	END=12766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chrM	12767	.	T	.	.	PASS	END=12791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chrM	12792	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:23:60
chrM	12793	.	C	.	.	PASS	END=12806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chrM	12807	.	G	.	.	PASS	END=12822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chrM	12823	.	A	G	348.53	LowGQ;LowGQX	BaseQRankSum=-0.964;DP=18;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.000;QD=19.36;ReadPosRankSum=-0.964;SB=-189.62	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,17:18:3.21:378,0,3:60:3:0.944
chrM	12824	.	G	.	.	PASS	END=12835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chrM	12836	.	G	.	.	PASS	END=12850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chrM	12851	.	G	A	650.79	PASS	DP=22;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=29.58;SB=-300.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,22:22:51.17:684,51,0:60:51:1.000
chrM	12852	.	T	.	.	PASS	END=12862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chrM	12863	.	C	.	.	PASS	END=12889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chrM	12890	.	G	.	.	PASS	END=12899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chrM	12900	.	G	.	.	PASS	END=12927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chrM	12928	.	C	.	.	PASS	END=12945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:48:60
chrM	12946	.	T	.	.	PASS	END=12973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:54:60
chrM	12974	.	C	.	.	PASS	END=13011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:60:60
chrM	13012	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:37:24:60
chrM	13013	.	C	.	.	PASS	END=13041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:57:60
chrM	13042	.	A	.	.	PASS	END=13054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chrM	13055	.	C	.	.	PASS	END=13062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chrM	13063	.	A	.	.	PASS	END=13065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:39:60
chrM	13066	.	C	.	.	PASS	END=13069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chrM	13070	.	G	.	.	PASS	END=13078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chrM	13079	.	C	.	.	PASS	END=13095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chrM	13096	.	T	.	.	PASS	END=13099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chrM	13100	.	G	.	.	PASS	END=13107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chrM	13108	.	C	.	.	PASS	END=13117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chrM	13118	.	A	.	.	PASS	END=13171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chrM	13172	.	T	.	.	PASS	END=13175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chrM	13176	.	T	.	.	PASS	END=13204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chrM	13205	.	G	.	.	PASS	END=13219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chrM	13220	.	C	.	.	PASS	END=13249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chrM	13250	.	T	.	.	PASS	END=13255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:60
chrM	13256	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:9:60
chrM	13257	.	C	.	.	PASS	END=13271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chrM	13272	.	T	.	.	PASS	END=13280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chrM	13281	.	T	.	.	PASS	END=13309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chrM	13310	.	G	.	.	PASS	END=13327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chrM	13328	.	A	.	.	PASS	END=13373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chrM	13374	.	T	.	.	PASS	END=13375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chrM	13376	.	A	.	.	PASS	END=13401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chrM	13402	.	T	.	.	PASS	END=13417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:33:60
chrM	13418	.	G	.	.	PASS	END=13427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chrM	13428	.	A	.	.	PASS	END=13480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chrM	13481	.	G	.	.	PASS	END=13485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:60
chrM	13486	.	A	.	.	PASS	END=13575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chrM	13576	.	C	.	.	PASS	END=13607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chrM	13608	.	C	.	.	PASS	END=13635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chrM	13636	.	T	.	.	PASS	END=13651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chrM	13652	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:33:60
chrM	13653	.	C	.	.	PASS	END=13658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chrM	13659	.	C	.	.	PASS	END=13677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chrM	13678	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:30:60
chrM	13679	.	C	.	.	PASS	END=13681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chrM	13682	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:21:60
chrM	13683	.	C	.	.	PASS	END=13697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chrM	13698	.	T	.	.	LowGQX	END=13700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:24:60
chrM	13701	.	A	.	.	PASS	END=13706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chrM	13707	.	T	.	.	LowGQX	END=13708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:27:60
chrM	13709	.	G	.	.	PASS	END=13714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chrM	13715	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chrM	13716	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chrM	13717	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chrM	13718	.	A	.	.	PASS	END=13721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chrM	13722	.	T	.	.	LowGQX	END=13724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chrM	13725	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chrM	13726	.	C	.	.	LowGQX	END=13729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chrM	13730	.	G	.	.	PASS	END=13731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chrM	13732	.	A	.	.	LowGQX	END=13733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:24:60
chrM	13734	.	T	.	.	PASS	END=13735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chrM	13736	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chrM	13737	.	T	.	.	PASS	END=13738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chrM	13739	.	A	.	.	LowGQX	END=13740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:27:60
chrM	13741	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chrM	13742	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chrM	13743	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chrM	13744	.	T	.	.	LowGQX	END=13745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:60
chrM	13746	.	A	.	.	PASS	END=13747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chrM	13748	.	A	.	.	LowGQX	END=13753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chrM	13754	.	T	.	.	LowGQX	END=13756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chrM	13757	.	C	.	.	LowGQX	END=13780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chrM	13781	.	A	.	.	LowGQX	END=13788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chrM	13789	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chrM	13790	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chrM	13791	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chrM	13792	.	C	.	.	LowGQX	END=13793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chrM	13794	.	T	.	.	PASS	END=13798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chrM	13799	.	C	.	.	PASS	END=13800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chrM	13801	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:3:60
chrM	13802	.	A	.	.	PASS	END=13816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chrM	13817	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:2:60
chrM	13818	.	C	.	.	PASS	END=13826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chrM	13827	.	G	.	.	PASS	END=13833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chrM	13834	.	A	.	.	PASS	END=13850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chrM	13851	.	A	.	.	PASS	END=13856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chrM	13857	.	T	.	.	PASS	END=13863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:33:60
chrM	13864	.	C	.	.	PASS	END=13892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chrM	13893	.	C	.	.	PASS	END=13928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chrM	13929	.	G	.	.	PASS	END=13941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chrM	13942	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:9:60
chrM	13943	.	A	.	.	PASS	END=13950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chrM	13951	.	C	.	.	PASS	END=13991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chrM	13992	.	T	.	.	PASS	END=14068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chrM	14069	.	T	.	.	PASS	END=14086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chrM	14087	.	A	.	.	PASS	END=14094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chrM	14095	.	T	.	.	PASS	END=14123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chrM	14124	.	T	.	.	PASS	END=14137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chrM	14138	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:28:60
chrM	14139	.	T	.	.	PASS	END=14145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chrM	14149	.	A	.	.	PASS	END=14153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chrM	14154	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:42:60
chrM	14155	.	T	.	.	PASS	END=14179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:59
chrM	14180	.	A	.	.	PASS	END=14212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:59
chrM	14213	.	C	T	755.29	PASS	DP=30;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=59;MQ0=0;QD=25.18;SB=-511.10	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,28:30:57.19:788,57,0:59:57:1.000
chrM	14214	.	A	.	.	PASS	END=14259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:59
chrM	14260	.	G	.	.	PASS	END=14283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:59
chrM	14284	.	C	.	.	PASS	END=14329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chrM	14330	.	C	.	.	PASS	END=14333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chrM	14334	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chrM	14335	.	C	.	.	PASS	END=14353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chrM	14354	.	T	.	.	LowGQX	END=14355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chrM	14356	.	T	.	.	PASS	END=14357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chrM	14358	.	A	.	.	LowGQX	END=14359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chrM	14360	.	C	.	.	PASS	END=14363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chrM	14364	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chrM	14365	.	G	.	.	PASS	END=14410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chrM	14411	.	G	A	376.36	LowGQ;LowGQX	BaseQRankSum=-1.085;DP=16;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=1.519;QD=23.52;ReadPosRankSum=0.868;SB=-272.83	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,15:16:3.20:405,0,3:60:3:0.938
chrM	14412	.	A	.	.	PASS	END=14422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chrM	14423	.	T	.	.	LowGQX	END=14428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chrM	14429	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chrM	14430	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chrM	14431	.	A	.	25.38	LowGQX	DP=13;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:10:12:1.29:60:1
chrM	14432	.	T	.	.	LowGQX	END=14437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chrM	14438	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chrM	14439	.	G	.	.	LowGQX	END=14440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chrM	14441	.	A	.	.	LowGQX	END=14448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:60
chrM	14449	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chrM	14450	.	A	.	.	LowGQX	END=14451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:60
chrM	14452	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chrM	14453	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chrM	14454	.	G	.	.	LowGQX	END=14456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chrM	14457	.	A	.	.	LowGQX	END=14458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:60
chrM	14459	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chrM	14460	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chrM	14461	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chrM	14462	.	T	.	.	PASS	END=14463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chrM	14464	.	T	.	.	LowGQX	END=14465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:60
chrM	14466	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chrM	14467	.	T	.	.	LowGQX	END=14472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:21:60
chrM	14473	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chrM	14474	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chrM	14475	.	A	.	.	PASS	END=14477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chrM	14478	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:60
chrM	14479	.	C	.	.	PASS	END=14489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chrM	14490	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:4:60
chrM	14491	.	C	.	.	PASS	END=14492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chrM	14493	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chrM	14494	.	C	.	.	PASS	END=14501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chrM	14502	.	A	.	.	PASS	END=14519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:60
chrM	14520	.	C	.	.	PASS	END=14530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chrM	14531	.	T	.	.	PASS	END=14557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chrM	14558	.	C	.	.	PASS	END=14580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chrM	14581	.	G	A	462.87	PASS	DP=19;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=24.36;SB=-235.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,19:19:36.12:496,36,0:60:36:1.000
chrM	14582	.	T	.	.	PASS	END=14596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chrM	14597	.	A	.	.	PASS	END=14618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chrM	14619	.	A	.	.	PASS	END=14635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chrM	14636	.	T	.	.	PASS	END=14645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chrM	14646	.	A	.	.	PASS	END=14665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chrM	14666	.	A	.	.	PASS	END=14673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chrM	14747	.	A	.	.	PASS	END=14750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chrM	14751	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:24:60
chrM	14752	.	C	.	.	PASS	END=14771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chrM	14772	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:1:60
chrM	14773	.	C	.	.	PASS	END=14795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chrM	14796	.	T	.	.	PASS	END=14813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chrM	14814	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:24:60
chrM	14815	.	C	.	.	PASS	END=14823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chrM	14824	.	A	.	.	PASS	END=14852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chrM	14853	.	C	.	.	PASS	END=14888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chrM	14889	.	G	.	.	PASS	END=14895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chrM	14896	.	T	.	.	PASS	END=14905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chrM	14906	.	A	G	894.33	PASS	DP=31;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=28.85;SB=-385.20	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,31:31:69.23:927,69,0:60:69:1.000
chrM	14907	.	C	.	.	PASS	END=14919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chrM	14920	.	A	.	.	PASS	END=14924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:51:60
chrM	14925	.	T	.	.	PASS	END=14979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chrM	14980	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:34:27:60
chrM	14981	.	C	.	.	PASS	END=15000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chrM	15001	.	A	.	.	PASS	END=15039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chrM	15040	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:52:60
chrM	15041	.	C	.	.	PASS	END=15065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chrM	15066	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:43:60
chrM	15067	.	T	.	.	PASS	END=15135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chrM	15136	.	G	.	.	PASS	END=15183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chrM	15184	.	T	.	.	PASS	END=15206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chrM	15207	.	C	.	.	PASS	END=15223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chrM	15224	.	C	.	.	PASS	END=15251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chrM	15252	.	T	.	.	PASS	END=15263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chrM	15264	.	C	.	.	PASS	END=15299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chrM	15300	.	T	.	.	PASS	END=15301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chrM	15302	.	A	G	792.53	PASS	DP=25;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=31.70;SB=-415.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,25:25:63.20:826,63,0:60:63:1.000
chrM	15303	.	C	.	.	PASS	END=15342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chrM	15343	.	T	.	.	PASS	END=15429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chrM	15430	.	A	.	.	PASS	END=15494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chrM	15495	.	C	.	.	PASS	END=15501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chrM	15502	.	A	.	.	PASS	END=15510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chrM	15511	.	A	.	.	PASS	END=15516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chrM	15517	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:24:60
chrM	15518	.	C	.	.	PASS	END=15525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chrM	15526	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chrM	15527	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:18:60
chrM	15528	.	C	.	.	PASS	END=15536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chrM	15537	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chrM	15538	.	C	.	.	PASS	END=15552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chrM	15553	.	A	.	.	PASS	END=15584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chrM	15585	.	A	.	.	PASS	END=15628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:60
chrM	15629	.	A	.	.	PASS	END=15646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chrM	15647	.	C	.	.	PASS	END=15680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chrM	15681	.	C	.	.	PASS	END=15740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chrM	15741	.	C	.	.	PASS	END=15758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chrM	15759	.	A	.	.	PASS	END=15762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chrM	15763	.	G	.	.	PASS	END=15778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chrM	15779	.	C	.	.	PASS	END=15792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chrM	15793	.	T	.	.	PASS	END=15826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chrM	15827	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chrM	15828	.	A	.	.	PASS	END=15854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chrM	15855	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chrM	15856	.	C	.	.	PASS	END=15859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chrM	15860	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chrM	15861	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chrM	15862	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chrM	15863	.	T	.	.	PASS	END=15864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chrM	15865	.	A	.	.	LowGQX	END=15883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chrM	15884	.	G	.	.	PASS	END=15885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chrM	15886	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chrM	15887	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	12099	.	A	.	.	LowGQX;LowMQ	END=12258	GT	./.
chr1	12554	.	A	.	.	LowGQX;LowMQ	END=12556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:3:8
chr1	12557	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	12558	.	C	.	.	LowGQX;LowMQ	END=12569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:3:7
chr1	12570	.	T	.	.	LowGQX;LowMQ	END=12582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:3:7
chr1	12583	.	C	.	.	LowGQX;LowMQ	END=12605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:3:7
chr1	12606	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	12607	.	C	.	.	LowGQX;LowMQ	END=12610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:3:7
chr1	12611	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	12612	.	G	.	.	LowGQX;LowMQ	END=12644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:3:7
chr1	12645	.	G	.	.	LowGQX;LowMQ	END=12653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:6:8
chr1	12654	.	C	.	.	LowGQX;LowMQ	END=12656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:9:11
chr1	12657	.	C	.	.	LowGQX;LowMQ	END=12662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:12:11
chr1	12663	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:25:9:11
chr1	12664	.	G	.	.	LowGQX;LowMQ	END=12667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:12:11
chr1	12668	.	A	.	.	LowGQX;LowMQ	END=12674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:9:11
chr1	12675	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:25:15:11
chr1	12676	.	G	.	.	LowGQX;LowMQ	END=12677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:9:11
chr1	12678	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:25:6:11
chr1	12679	.	C	.	.	LowGQX;LowMQ	END=12681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:9:10
chr1	12682	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:24:0:10
chr1	12683	.	T	.	.	LowGQX;LowMQ	END=12684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:6:10
chr1	12685	.	G	.	.	LowGQX;LowMQ	END=12686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:12:10
chr1	12687	.	A	.	.	LowGQX;LowMQ	END=12688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:6:10
chr1	12689	.	C	.	.	LowGQX;LowMQ	END=12691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:12:10
chr1	12692	.	A	.	.	LowGQX;LowMQ	END=12694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:9:11
chr1	12695	.	C	.	.	LowGQX;LowMQ	END=12696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:15:13
chr1	12697	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:31:21:13
chr1	12698	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:31:2:13
chr1	12699	.	T	.	.	LowGQX;LowMQ	END=12704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:24:13
chr1	12705	.	T	.	.	LowMQ	END=12707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:30:15
chr1	12708	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:31:27:15
chr1	12709	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:31:30:15
chr1	12710	.	A	.	.	LowGQX;LowMQ	END=12718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:21:14
chr1	12719	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:31:30:15
chr1	12720	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:31:27:15
chr1	12721	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:31:30:15
chr1	13332	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:34
chr1	13333	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:34
chr1	13334	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:34
chr1	13335	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:34
chr1	13336	.	C	.	.	PASS	END=13347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:32
chr1	13348	.	T	.	.	PASS	END=13349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:32
chr1	13350	.	G	.	.	PASS	END=13352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:30:31
chr1	13353	.	C	.	.	PASS	END=13361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:33:31
chr1	13362	.	C	.	.	PASS	END=13363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:31
chr1	13364	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:30:30
chr1	13365	.	C	.	.	PASS	END=13366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:30
chr1	13367	.	G	.	.	PASS	END=13378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:31
chr1	13379	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:45:31
chr1	13380	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:24:31
chr1	13381	.	T	.	.	PASS	END=13387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:31
chr1	13388	.	T	.	.	PASS	END=13390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:48:31
chr1	13391	.	T	.	.	PASS	END=13396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:31
chr1	13397	.	C	.	.	PASS	END=13424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:31
chr1	13425	.	C	.	.	PASS	END=13453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:31
chr1	13454	.	T	.	.	PASS	END=13461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:35
chr1	13462	.	A	.	.	PASS	END=13483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:36
chr1	13484	.	C	.	.	PASS	END=13514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:33
chr1	13515	.	C	.	.	PASS	END=13604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:25
chr1	13605	.	C	.	.	PASS	END=13618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:20
chr1	13619	.	G	.	.	LowMQ	END=13647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:77:17
chr1	13648	.	G	.	.	LowMQ	END=13656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:81:17
chr1	13656	.	CAG	C	1162.04	LowMQ	BaseQRankSum=-0.390;DP=82;FS=0.000;HRun=0;HaplotypeScore=128.8254;MQ=17;MQ0=35;MQRankSum=-1.920;QD=14.17;ReadPosRankSum=-1.169;SB=-148.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,38:39:99:1201,0,675:17:99:0.463
chr1	13657	.	A	.	63.03	LowMQ	DP=82;MQ=17;MQ0=35	GT:AD:DP:GQ:MQ:GQX	0:44:44:33.04:17:33
chr1	13658	.	G	.	72.05	LowMQ	DP=81;MQ=17;MQ0=34	GT:AD:DP:GQ:MQ:GQX	0:41:43:42.06:17:42
chr1	13659	.	G	.	.	LowMQ	END=13677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:78:17
chr1	13678	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:70:66:17
chr1	13679	.	G	.	.	LowMQ	END=13681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:75:17
chr1	13682	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:69:63:17
chr1	13683	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:69:96:17
chr1	13684	.	C	.	117.12	LowMQ	DP=69;MQ=17;MQ0=28	GT:AD:DP:GQ:MQ:GQX	0/0:55:69:87.13:17:87
chr1	13685	.	T	.	.	LowMQ	END=13700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:75:17
chr1	13701	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:60:54:18
chr1	30335	.	T	.	.	LowGQX	END=30503	GT	./.
chr1	35046	.	G	.	.	LowGQX	END=35207	GT	./.
chr1	35208	.	G	.	.	LowGQX;LowMQ	END=35441	GT	./.
chr1	35442	.	A	.	.	LowGQX	END=35544	GT	./.
chr1	35619	.	G	.	.	LowGQX	END=35778	GT	./.
chr1	69078	.	A	.	.	LowGQX	END=69649	GT	./.
chr1	69650	.	G	.	.	LowGQX;LowMQ	END=69800	GT	./.
chr1	69801	.	T	.	.	LowGQX	END=69819	GT	./.
chr1	69820	.	T	.	.	LowGQX;LowMQ	END=70017	GT	./.
chr1	324295	.	C	.	.	LowGQX;LowMQ	END=324394	GT	./.
chr1	324428	.	T	.	.	LowGQX;LowMQ	END=324436	GT	./.
chr1	324437	.	A	.	.	LowGQX	END=325565	GT	./.
chr1	325566	.	G	.	.	LowGQX;LowMQ	END=325605	GT	./.
chr1	327735	.	G	.	.	LowGQX	END=327894	GT	./.
chr1	327895	.	G	.	.	LowGQX;LowMQ	END=328135	GT	./.
chr1	328136	.	C	.	.	LowGQX	END=328214	GT	./.
chr1	367646	.	G	.	.	LowGQX	END=367926	GT	./.
chr1	367927	.	A	.	.	LowGQX;LowMQ	END=368077	GT	./.
chr1	368078	.	G	.	.	LowGQX	END=368114	GT	./.
chr1	368115	.	G	.	.	LowGQX;LowMQ	END=368264	GT	./.
chr1	368265	.	A	.	.	LowGQX	END=368605	GT	./.
chr1	621093	.	C	.	.	LowGQX	END=621135	GT	./.
chr1	621136	.	C	.	.	LowGQX;LowMQ	END=621327	GT	./.
chr1	621328	.	G	.	.	LowGQX	END=622042	GT	./.
chr1	664485	.	C	.	.	LowGQX;LowMQ	END=664696	GT	./.
chr1	664697	.	A	.	.	LowGQX	END=665108	GT	./.
chr1	721405	.	G	.	.	LowGQX	END=721665	GT	./.
chr1	721666	.	G	.	.	LowGQX	END=721688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:48
chr1	721689	.	C	.	.	LowGQX	.	GT	./.
chr1	721690	.	A	.	.	LowGQX	END=721780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:48
chr1	721781	.	C	.	33	LowGQX	DP=2;MQ=48;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:48:3
chr1	721782	.	T	.	.	LowGQX	END=721795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:48
chr1	721796	.	A	.	.	LowGQX	END=721918	GT	./.
chr1	762080	.	C	.	.	LowGQX	END=762128	GT	./.
chr1	762129	.	T	.	.	LowGQX	END=762139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	762140	.	A	.	.	LowGQX	.	GT	./.
chr1	762141	.	T	.	.	LowGQX	END=762153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	762154	.	T	.	.	LowGQX	.	GT	./.
chr1	762155	.	A	.	.	LowGQX	END=762224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	762225	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	762226	.	C	.	.	LowGQX	END=762238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	762239	.	C	.	.	LowGQX	.	GT	./.
chr1	762240	.	A	.	.	LowGQX	END=762257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	762258	.	A	.	.	LowGQX	END=762571	GT	./.
chr1	861308	.	G	.	.	LowGQX	END=861407	GT	./.
chr1	865533	.	A	.	.	LowGQX	END=865718	GT	./.
chr1	866395	.	G	.	.	LowGQX	END=866494	GT	./.
chr1	871150	.	A	.	.	LowGQX	END=871151	GT	./.
chr1	871152	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	871153	.	C	.	.	LowGQX	END=871154	GT	./.
chr1	871155	.	G	.	.	LowGQX	END=871158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	871159	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	871160	.	G	.	.	LowGQX	END=871163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	871164	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	871165	.	C	.	.	LowGQX	END=871168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	871169	.	C	.	.	LowGQX	END=871170	GT	./.
chr1	871171	.	A	.	.	LowGQX	END=871172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	871173	.	C	.	.	LowGQX	END=871174	GT	./.
chr1	871175	.	T	.	.	LowGQX	END=871178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	871179	.	A	.	.	LowGQX	.	GT	./.
chr1	871180	.	T	.	.	LowGQX	END=871181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	871182	.	C	.	.	LowGQX	END=871183	GT	./.
chr1	871184	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	871185	.	C	.	.	LowGQX	END=871188	GT	./.
chr1	871189	.	C	.	.	LowGQX	END=871192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	871193	.	G	.	.	LowGQX	END=871194	GT	./.
chr1	871195	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	871196	.	G	.	.	LowGQX	END=871198	GT	./.
chr1	871199	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	871200	.	C	.	.	LowGQX	END=871278	GT	./.
chr1	874415	.	C	.	.	LowGQX	END=874422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	874423	.	A	.	.	LowGQX	.	GT	./.
chr1	874424	.	C	.	.	LowGQX	END=874451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	874452	.	C	.	.	LowGQX	END=874514	GT	./.
chr1	874653	.	A	.	.	LowGQX	END=874713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	874714	.	C	.	6.90	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.02:60:0
chr1	874715	.	G	.	.	LowGQX	END=874739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	874740	.	C	.	.	LowGQX	END=874771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	874772	.	A	.	.	LowGQX	.	GT	./.
chr1	874773	.	C	.	.	LowGQX	END=874774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	874775	.	T	.	.	LowGQX	END=874783	GT	./.
chr1	874784	.	C	.	.	LowGQX	END=874792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	874793	.	G	.	.	LowGQX	END=874794	GT	./.
chr1	874795	.	G	.	.	LowGQX	END=874805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	874806	.	C	G	3.07	LowGQX;LowQD;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=1.54;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:30,0,30:60:3:0.500
chr1	874807	.	T	.	.	LowGQX	END=874811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	874812	.	T	.	.	LowGQX	.	GT	./.
chr1	874813	.	G	.	.	LowGQX	END=874814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	874815	.	T	.	.	LowGQX	.	GT	./.
chr1	874816	.	C	.	.	LowGQX	END=874825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	874826	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	874827	.	C	.	.	LowGQX	END=874841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	874842	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	876492	.	C	.	.	LowGQX	END=876688	GT	./.
chr1	877473	.	A	.	.	LowGQX	END=877516	GT	./.
chr1	877517	.	G	.	.	LowGQX	END=877683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	877727	.	T	.	.	LowGQX	END=877737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	877738	.	G	.	.	LowGQX	END=877879	GT	./.
chr1	877937	.	A	.	.	LowGQX	END=878313	GT	./.
chr1	878314	.	G	.	.	LowGQX	END=878351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	878352	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	878353	.	G	.	.	LowGQX	END=878436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	878437	.	A	.	.	LowGQX	END=878440	GT	./.
chr1	878590	.	G	.	.	LowGQX	END=878759	GT	./.
chr1	879076	.	A	.	.	LowGQX	END=879359	GT	./.
chr1	879360	.	C	.	.	LowGQX	END=879441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	879442	.	A	.	.	LowGQX	.	GT	./.
chr1	879443	.	C	.	.	LowGQX	END=879447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	879448	.	T	.	.	LowGQX	.	GT	./.
chr1	879449	.	T	.	.	LowGQX	END=879458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	879459	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	879460	.	C	.	.	LowGQX	END=879490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	879491	.	T	.	.	LowGQX	.	GT	./.
chr1	879492	.	C	.	.	LowGQX	END=879506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	879507	.	C	.	.	LowGQX	.	GT	./.
chr1	879508	.	C	.	.	LowGQX	END=879518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	879519	.	C	.	.	LowGQX	.	GT	./.
chr1	879520	.	A	.	.	LowGQX	END=879535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	880018	.	G	.	.	LowGQX	END=880182	GT	./.
chr1	880422	.	C	.	.	LowGQX	END=880528	GT	./.
chr1	880896	.	A	.	.	LowGQX	END=881035	GT	./.
chr1	881551	.	A	.	.	LowGQX	.	GT	./.
chr1	881552	.	C	.	.	LowGQX	END=881567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	881568	.	G	.	.	LowGQX	.	GT	./.
chr1	881569	.	A	.	.	LowGQX	END=881580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	881581	.	A	.	.	LowGQX	.	GT	./.
chr1	881582	.	T	.	.	LowGQX	END=881609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	881610	.	G	.	.	LowGQX	.	GT	./.
chr1	881611	.	C	.	.	LowGQX	END=881623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	881624	.	T	.	.	LowGQX	.	GT	./.
chr1	881625	.	C	.	.	LowGQX	END=881626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	881627	.	G	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	881628	.	G	.	.	LowGQX	END=881647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	881648	.	T	.	.	LowGQX	.	GT	./.
chr1	881649	.	C	.	.	LowGQX	END=881653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	881654	.	T	.	.	LowGQX	.	GT	./.
chr1	881655	.	C	.	.	LowGQX	END=881668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	881780	.	A	.	.	LowGQX	END=881927	GT	./.
chr1	883509	.	A	.	.	LowGQX	END=883614	GT	./.
chr1	883868	.	A	.	.	LowGQX	END=883869	GT	./.
chr1	883870	.	C	.	.	LowGQX	END=883871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	883872	.	G	.	.	LowGQX	.	GT	./.
chr1	883873	.	G	.	.	LowGQX	END=883901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	883902	.	A	.	.	LowGQX	.	GT	./.
chr1	883903	.	C	.	.	LowGQX	END=883941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	883942	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	883943	.	A	.	.	LowGQX	END=883950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	883951	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	883952	.	G	.	.	LowGQX	END=883957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	883958	.	C	.	.	LowGQX	.	GT	./.
chr1	883959	.	T	.	.	LowGQX	END=883974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	883975	.	C	.	.	LowGQX	.	GT	./.
chr1	883976	.	T	.	.	LowGQX	END=883985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	886505	.	A	.	.	LowGQX	END=886620	GT	./.
chr1	887378	.	A	.	.	LowGQX	END=887521	GT	./.
chr1	887790	.	A	.	.	LowGQX	END=887864	GT	./.
chr1	887865	.	G	.	.	LowGQX	END=887868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	887869	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	887870	.	A	.	.	LowGQX	END=887871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	887872	.	C	.	.	LowGQX	END=887873	GT	./.
chr1	887874	.	G	.	.	LowGQX	END=887877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	887878	.	C	.	.	LowGQX	.	GT	./.
chr1	887879	.	C	.	.	LowGQX	END=887885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	887886	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	887887	.	G	.	.	LowGQX	END=887890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	887891	.	C	A	7.08	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=3.54;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:36,3,0:60:3:1.000
chr1	887892	.	T	.	.	LowGQX	END=887893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	887894	.	C	.	.	LowGQX	.	GT	./.
chr1	887895	.	G	.	.	LowGQX	END=887900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	887901	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	887902	.	T	.	.	LowGQX	END=887936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	887937	.	G	.	.	LowGQX	.	GT	./.
chr1	887938	.	G	.	.	LowGQX	END=887968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	887969	.	G	.	.	LowGQX	END=887982	GT	./.
chr1	888553	.	A	.	.	LowGQX	END=888670	GT	./.
chr1	889160	.	A	.	.	LowGQX	END=889241	GT	./.
chr1	889242	.	A	.	.	LowGQX	END=889267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	889268	.	A	.	.	LowGQX	.	GT	./.
chr1	889269	.	C	.	.	LowGQX	END=889274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	889382	.	A	.	.	LowGQX	END=889421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	889422	.	G	.	.	LowGQX	END=889551	GT	./.
chr1	891299	.	T	.	.	LowGQX	END=891398	GT	./.
chr1	891473	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891474	.	C	.	.	LowGQX	END=891477	GT	./.
chr1	891478	.	C	.	.	LowGQX	END=891481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891482	.	G	.	.	LowGQX	END=891484	GT	./.
chr1	891485	.	C	.	.	LowGQX	END=891486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891487	.	T	.	.	LowGQX	END=891488	GT	./.
chr1	891489	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891490	.	C	.	.	LowGQX	END=891494	GT	./.
chr1	891495	.	A	.	.	LowGQX	END=891496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891497	.	T	.	.	LowGQX	.	GT	./.
chr1	891498	.	T	.	.	LowGQX	END=891499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891500	.	G	.	.	LowGQX	.	GT	./.
chr1	891501	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891502	.	T	.	.	LowGQX	.	GT	./.
chr1	891503	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891504	.	G	.	.	LowGQX	END=891507	GT	./.
chr1	891508	.	C	.	.	LowGQX	END=891510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891511	.	C	.	.	LowGQX	.	GT	./.
chr1	891512	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891513	.	C	.	.	LowGQX	END=891514	GT	./.
chr1	891515	.	T	.	.	LowGQX	END=891517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891518	.	C	.	.	LowGQX	END=891521	GT	./.
chr1	891522	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891523	.	C	.	.	LowGQX	END=891527	GT	./.
chr1	891528	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891529	.	G	.	.	LowGQX	END=891530	GT	./.
chr1	891531	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891532	.	T	.	.	LowGQX	END=891534	GT	./.
chr1	891535	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891536	.	G	.	.	LowGQX	END=891541	GT	./.
chr1	891542	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891543	.	G	.	.	LowGQX	END=891547	GT	./.
chr1	891548	.	T	.	.	LowGQX	END=891549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891550	.	G	.	.	LowGQX	END=891554	GT	./.
chr1	891555	.	G	.	.	LowGQX	END=891556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891557	.	C	.	.	LowGQX	END=891558	GT	./.
chr1	891559	.	G	.	.	LowGQX	END=891560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891561	.	A	.	.	LowGQX	.	GT	./.
chr1	891562	.	C	.	.	LowGQX	END=891563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891564	.	A	.	.	LowGQX	.	GT	./.
chr1	891565	.	C	.	.	LowGQX	END=891566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891567	.	T	.	.	LowGQX	.	GT	./.
chr1	891568	.	C	.	.	LowGQX	END=891570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891571	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	891572	.	G	.	.	LowGQX	END=891573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	891574	.	A	.	.	LowGQX	END=891597	GT	./.
chr1	892272	.	A	.	.	LowGQX	.	GT	./.
chr1	892273	.	C	.	.	LowGQX	END=892275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	892276	.	T	.	.	LowGQX	.	GT	./.
chr1	892277	.	T	.	.	LowGQX	END=892286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	892287	.	T	.	.	LowGQX	END=892288	GT	./.
chr1	892289	.	C	.	.	LowGQX	END=892290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	892291	.	A	.	.	LowGQX	.	GT	./.
chr1	892292	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	892293	.	C	.	.	LowGQX	END=892295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	892296	.	T	.	.	LowGQX	.	GT	./.
chr1	892297	.	C	.	.	LowGQX	END=892301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	892302	.	A	.	.	LowGQX	END=892303	GT	./.
chr1	892304	.	G	.	.	LowGQX	END=892329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	892330	.	T	.	.	LowGQX	.	GT	./.
chr1	892331	.	C	.	.	LowGQX	END=892332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	892333	.	T	.	.	LowGQX	.	GT	./.
chr1	892334	.	C	.	.	LowGQX	END=892407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	892477	.	A	.	.	LowGQX	END=892655	GT	./.
chr1	894011	.	T	.	.	LowGQX	END=894272	GT	./.
chr1	894273	.	G	.	.	LowGQX	END=894450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	894451	.	C	.	.	LowGQX	END=894463	GT	./.
chr1	894558	.	C	.	.	LowGQX	END=894657	GT	./.
chr1	896021	.	C	.	.	LowGQX	END=896107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	896108	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	896109	.	G	.	.	LowGQX	END=896127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	896128	.	A	.	.	LowGQX	END=896182	GT	./.
chr1	896601	.	G	.	.	LowGQX	END=896693	GT	./.
chr1	896694	.	G	.	.	LowGQX	END=896701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	896702	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	896703	.	G	.	.	LowGQX	END=896705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	896706	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	896707	.	C	.	.	LowGQX	END=896712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	896713	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	896714	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	896715	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	896716	.	G	.	.	LowGQX	END=896725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	896726	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	896727	.	G	.	.	LowGQX	END=896737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	896738	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	896739	.	G	.	.	LowGQX	END=896760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	896761	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	896762	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	896763	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	896764	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	896765	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	896766	.	G	.	.	LowGQX	END=896790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	896791	.	C	A	9.30	LowGQX	BaseQRankSum=0.000;DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-1.026;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:38.75:39,0,39:60:9:0.500
chr1	896792	.	A	.	.	LowGQX	END=896914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	896915	.	T	.	.	LowGQX	END=896940	GT	./.
chr1	897007	.	A	.	.	LowGQX	END=897052	GT	./.
chr1	897053	.	A	.	.	LowGQX	END=897056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897057	.	A	.	.	LowGQX	.	GT	./.
chr1	897058	.	C	.	.	LowGQX	END=897062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897063	.	A	.	.	LowGQX	END=897064	GT	./.
chr1	897065	.	G	.	.	LowGQX	END=897071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897072	.	A	.	.	LowGQX	.	GT	./.
chr1	897073	.	C	.	.	LowGQX	END=897076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897077	.	C	.	.	LowGQX	.	GT	./.
chr1	897078	.	T	.	.	LowGQX	END=897085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897086	.	T	.	.	LowGQX	.	GT	./.
chr1	897087	.	T	.	.	LowGQX	END=897088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897089	.	G	.	.	LowGQX	.	GT	./.
chr1	897090	.	C	.	.	LowGQX	END=897094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897095	.	A	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	897096	.	C	.	.	LowGQX	.	GT	./.
chr1	897097	.	G	.	.	LowGQX	END=897107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897108	.	T	.	.	LowGQX	.	GT	./.
chr1	897109	.	G	.	.	LowGQX	END=897118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897119	.	G	.	.	LowGQX	.	GT	./.
chr1	897120	.	G	.	.	LowGQX	END=897132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897204	.	A	.	.	LowGQX	END=897477	GT	./.
chr1	897478	.	C	.	.	LowGQX	END=897482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897483	.	T	.	.	LowGQX	.	GT	./.
chr1	897484	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897485	.	T	.	.	LowGQX	.	GT	./.
chr1	897486	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897487	.	T	.	.	LowGQX	.	GT	./.
chr1	897488	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897489	.	A	.	.	LowGQX	END=897491	GT	./.
chr1	897492	.	C	.	.	LowGQX	END=897493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897494	.	C	.	.	LowGQX	.	GT	./.
chr1	897495	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897496	.	A	.	.	LowGQX	.	GT	./.
chr1	897497	.	C	.	.	LowGQX	END=897498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897499	.	C	.	.	LowGQX	END=897500	GT	./.
chr1	897501	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897502	.	T	.	.	LowGQX	.	GT	./.
chr1	897503	.	T	.	.	LowGQX	END=897507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897508	.	T	.	.	LowGQX	.	GT	./.
chr1	897509	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897510	.	C	.	.	LowGQX	.	GT	./.
chr1	897511	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897512	.	G	.	.	LowGQX	.	GT	./.
chr1	897513	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897514	.	C	.	.	LowGQX	END=897515	GT	./.
chr1	897516	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897517	.	A	.	.	LowGQX	END=897520	GT	./.
chr1	897521	.	C	.	.	LowGQX	END=897522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897523	.	G	.	.	LowGQX	.	GT	./.
chr1	897524	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897525	.	C	.	.	LowGQX	END=897526	GT	./.
chr1	897527	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897528	.	C	.	.	LowGQX	.	GT	./.
chr1	897529	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897530	.	A	.	.	LowGQX	.	GT	./.
chr1	897531	.	T	.	.	LowGQX	END=897532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897533	.	C	.	.	LowGQX	.	GT	./.
chr1	897534	.	T	.	.	LowGQX	END=897535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897536	.	A	.	.	LowGQX	.	GT	./.
chr1	897537	.	G	.	.	LowGQX	END=897538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897539	.	G	.	.	LowGQX	.	GT	./.
chr1	897540	.	C	.	.	LowGQX	END=897541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897542	.	T	.	.	LowGQX	.	GT	./.
chr1	897543	.	G	.	.	LowGQX	END=897544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897545	.	T	.	.	LowGQX	.	GT	./.
chr1	897546	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897547	.	T	.	.	LowGQX	.	GT	./.
chr1	897548	.	G	.	.	LowGQX	END=897550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897551	.	T	.	.	LowGQX	.	GT	./.
chr1	897552	.	C	.	.	LowGQX	END=897555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897556	.	G	.	.	LowGQX	END=897558	GT	./.
chr1	897559	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897560	.	C	.	.	LowGQX	END=897561	GT	./.
chr1	897562	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897563	.	T	.	.	LowGQX	.	GT	./.
chr1	897564	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	897565	.	C	.	.	LowGQX	.	GT	./.
chr1	897566	.	T	.	.	LowGQX	END=897571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897572	.	T	.	.	LowGQX	.	GT	./.
chr1	897573	.	G	.	.	LowGQX	END=897577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897578	.	C	.	.	LowGQX	END=897579	GT	./.
chr1	897580	.	C	.	.	LowGQX	END=897588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897589	.	T	.	.	LowGQX	.	GT	./.
chr1	897590	.	C	.	.	LowGQX	END=897591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897592	.	T	.	.	LowGQX	.	GT	./.
chr1	897593	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897594	.	T	.	.	LowGQX	.	GT	./.
chr1	897595	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897596	.	T	.	.	LowGQX	.	GT	./.
chr1	897597	.	G	.	.	LowGQX	END=897599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897600	.	T	.	.	LowGQX	.	GT	./.
chr1	897601	.	C	.	.	LowGQX	END=897605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897606	.	C	.	.	LowGQX	.	GT	./.
chr1	897607	.	T	.	.	LowGQX	END=897611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897612	.	T	.	.	LowGQX	.	GT	./.
chr1	897613	.	C	.	.	LowGQX	END=897619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897620	.	T	.	.	LowGQX	.	GT	./.
chr1	897621	.	C	.	.	LowGQX	END=897623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	897624	.	A	.	.	LowGQX	END=897652	GT	./.
chr1	897733	.	A	.	.	LowGQX	END=897853	GT	./.
chr1	898082	.	A	.	.	LowGQX	END=898290	GT	./.
chr1	898291	.	G	.	.	LowGQX	END=898299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	898412	.	G	.	.	LowGQX	END=898416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	898417	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	898418	.	C	.	.	LowGQX	END=898421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	898422	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	898423	.	G	.	.	LowGQX	END=898439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	898440	.	C	.	.	LowGQX	END=898511	GT	./.
chr1	898512	.	C	.	.	LowGQX	END=898541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	898542	.	A	.	.	LowGQX	.	GT	./.
chr1	898543	.	C	.	.	LowGQX	END=898692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	898715	.	A	.	.	LowGQX	END=898724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	898725	.	G	.	.	LowGQX	.	GT	./.
chr1	898726	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	898727	.	A	.	.	LowGQX	.	GT	./.
chr1	898728	.	C	.	.	LowGQX	END=898733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	898734	.	A	.	.	LowGQX	.	GT	./.
chr1	898735	.	C	.	.	LowGQX	END=898741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	898742	.	A	.	.	LowGQX	.	GT	./.
chr1	898743	.	C	.	.	LowGQX	END=898791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	898792	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	898793	.	A	.	.	LowGQX	END=898828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	898829	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	898830	.	T	.	.	LowGQX	END=898836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	898837	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	898838	.	C	.	.	LowGQX	END=898850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	898851	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	898852	.	C	.	.	LowGQX	END=898886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	899295	.	C	.	.	LowGQX	END=899309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	899310	.	T	.	.	LowGQX	.	GT	./.
chr1	899311	.	A	.	.	LowGQX	END=899313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	899314	.	A	.	.	LowGQX	.	GT	./.
chr1	899315	.	C	.	.	LowGQX	END=899337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	899338	.	C	.	.	LowGQX	.	GT	./.
chr1	899339	.	C	.	.	LowGQX	END=899346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	899347	.	C	.	.	LowGQX	.	GT	./.
chr1	899348	.	C	.	.	LowGQX	END=899349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	899350	.	T	.	.	LowGQX	.	GT	./.
chr1	899351	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	899352	.	A	.	.	LowGQX	.	GT	./.
chr1	899353	.	G	.	.	LowGQX	END=899362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	899363	.	G	.	.	LowGQX	.	GT	./.
chr1	899364	.	C	.	.	LowGQX	END=899372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	899373	.	C	.	.	LowGQX	.	GT	./.
chr1	899374	.	G	.	.	LowGQX	END=899379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	899380	.	C	.	.	LowGQX	.	GT	./.
chr1	899381	.	C	.	.	LowGQX	END=899384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	899385	.	C	.	.	LowGQX	.	GT	./.
chr1	899386	.	T	.	.	LowGQX	END=899389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	899390	.	T	.	.	LowGQX	.	GT	./.
chr1	899391	.	G	.	.	LowGQX	END=899394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	899474	.	T	.	.	LowGQX	END=899573	GT	./.
chr1	899707	.	C	.	.	LowGQX	END=899912	GT	./.
chr1	900341	.	A	.	.	LowGQX	END=900573	GT	./.
chr1	901904	.	C	.	.	LowGQX	END=901951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	901952	.	T	.	.	LowGQX	END=902003	GT	./.
chr1	902082	.	A	.	.	LowGQX	END=902185	GT	./.
chr1	905655	.	A	.	.	LowGQX	END=905805	GT	./.
chr1	905832	.	A	.	.	LowGQX	END=905991	GT	./.
chr1	906064	.	A	.	.	LowGQX	END=906388	GT	./.
chr1	906416	.	C	.	.	LowGQX	END=906578	GT	./.
chr1	906579	.	G	.	.	LowGQX	END=906590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	906695	.	C	.	.	LowGQX	END=906794	GT	./.
chr1	907443	.	T	.	.	LowGQX	END=907474	GT	./.
chr1	907475	.	C	.	.	LowGQX	END=907476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	907477	.	T	.	.	LowGQX	.	GT	./.
chr1	907478	.	C	.	.	LowGQX	END=907532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	907533	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	907534	.	G	.	.	LowGQX	END=907541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	907542	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	907666	.	A	.	.	LowGQX	END=907806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	908239	.	A	.	.	LowGQX	END=908392	GT	./.
chr1	908564	.	A	.	.	LowGQX	END=908569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	908570	.	A	.	.	LowGQX	.	GT	./.
chr1	908571	.	G	.	.	LowGQX	END=908618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	908619	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	908620	.	C	.	.	LowGQX	END=908624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	908625	.	T	.	.	LowGQX	.	GT	./.
chr1	908626	.	G	.	.	LowGQX	END=908645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	908646	.	G	.	.	LowGQX	.	GT	./.
chr1	908647	.	A	.	.	LowGQX	END=908655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	908656	.	C	.	.	LowGQX	.	GT	./.
chr1	908657	.	G	.	.	LowGQX	END=908666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	908667	.	C	.	.	LowGQX	.	GT	./.
chr1	908668	.	C	.	.	LowGQX	END=908670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	908671	.	G	.	.	LowGQX	.	GT	./.
chr1	908672	.	G	.	.	LowGQX	END=908708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	908878	.	A	.	.	LowGQX	END=909022	GT	./.
chr1	909211	.	A	.	.	LowGQX	END=909277	GT	./.
chr1	909278	.	G	.	.	LowGQX	END=909370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	909371	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	909372	.	C	.	.	LowGQX	END=909433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	909671	.	T	.	.	LowGQX	END=909770	GT	./.
chr1	909820	.	A	.	.	LowGQX	END=909957	GT	./.
chr1	911500	.	G	.	.	LowGQX	END=911650	GT	./.
chr1	911878	.	C	.	.	LowGQX	END=911945	GT	./.
chr1	911946	.	C	.	.	LowGQX	END=912004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914255	.	A	.	.	LowGQX	.	GT	./.
chr1	914256	.	C	.	.	LowGQX	END=914258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914259	.	A	.	.	LowGQX	.	GT	./.
chr1	914260	.	C	.	.	LowGQX	END=914261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914262	.	T	.	.	LowGQX	.	GT	./.
chr1	914263	.	G	.	.	LowGQX	END=914266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914267	.	G	.	.	LowGQX	END=914268	GT	./.
chr1	914269	.	C	.	.	LowGQX	END=914271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914272	.	A	.	.	LowGQX	.	GT	./.
chr1	914273	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914274	.	A	.	.	LowGQX	.	GT	./.
chr1	914275	.	G	.	.	LowGQX	END=914280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914281	.	T	.	.	LowGQX	.	GT	./.
chr1	914282	.	G	.	.	LowGQX	END=914283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914284	.	A	.	.	LowGQX	.	GT	./.
chr1	914285	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914286	.	C	.	.	LowGQX	.	GT	./.
chr1	914287	.	C	.	.	LowGQX	END=914289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914290	.	T	.	.	LowGQX	END=914291	GT	./.
chr1	914292	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914293	.	A	.	.	LowGQX	.	GT	./.
chr1	914294	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914295	.	C	.	.	LowGQX	END=914296	GT	./.
chr1	914297	.	C	.	.	LowGQX	END=914303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914304	.	C	.	.	LowGQX	END=914305	GT	./.
chr1	914306	.	T	.	.	LowGQX	END=914307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914308	.	A	.	.	LowGQX	.	GT	./.
chr1	914309	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914310	.	G	.	.	LowGQX	END=914369	GT	./.
chr1	914370	.	G	.	.	LowGQX	END=914454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	914455	.	A	.	.	LowGQX	END=914478	GT	./.
chr1	914479	.	G	.	.	LowGQX	END=914485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914486	.	G	.	.	LowGQX	.	GT	./.
chr1	914487	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914488	.	T	.	.	LowGQX	.	GT	./.
chr1	914489	.	C	.	.	LowGQX	END=914492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914493	.	T	.	.	LowGQX	.	GT	./.
chr1	914494	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914495	.	T	.	.	LowGQX	.	GT	./.
chr1	914496	.	C	.	.	LowGQX	END=914497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914498	.	G	.	.	LowGQX	.	GT	./.
chr1	914499	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914500	.	A	.	.	LowGQX	END=914501	GT	./.
chr1	914502	.	C	.	.	LowGQX	END=914505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914506	.	T	.	.	LowGQX	.	GT	./.
chr1	914507	.	C	.	.	LowGQX	END=914512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914513	.	A	.	.	LowGQX	.	GT	./.
chr1	914514	.	C	.	.	LowGQX	END=914544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914545	.	T	.	.	LowGQX	.	GT	./.
chr1	914546	.	C	.	.	LowGQX	END=914550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914551	.	A	.	.	LowGQX	.	GT	./.
chr1	914552	.	A	.	.	LowGQX	END=914577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914578	.	T	.	.	LowGQX	.	GT	./.
chr1	914579	.	G	.	.	LowGQX	END=914609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914610	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	914611	.	G	.	.	LowGQX	END=914628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914629	.	T	.	.	LowGQX	END=914715	GT	./.
chr1	914716	.	G	.	.	LowGQX	END=914848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914849	.	C	.	.	LowGQX	END=914927	GT	./.
chr1	914928	.	A	.	.	LowGQX	END=914994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	914995	.	A	.	.	LowGQX	.	GT	./.
chr1	914996	.	T	.	.	LowGQX	END=915000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	915001	.	A	.	.	LowGQX	.	GT	./.
chr1	915002	.	C	.	.	LowGQX	END=915030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	915031	.	G	.	.	LowGQX	.	GT	./.
chr1	915032	.	G	.	.	LowGQX	END=915054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	915055	.	G	.	.	LowGQX	.	GT	./.
chr1	915056	.	C	.	.	LowGQX	END=915058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	915059	.	T	.	.	LowGQX	.	GT	./.
chr1	915060	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	915061	.	G	.	.	LowGQX	.	GT	./.
chr1	915062	.	G	.	.	LowGQX	END=915075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	915076	.	A	.	.	LowGQX	.	GT	./.
chr1	915077	.	C	.	.	LowGQX	END=915081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	915082	.	C	.	.	LowGQX	.	GT	./.
chr1	915083	.	C	.	.	LowGQX	END=915086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	915087	.	G	.	.	LowGQX	END=915088	GT	./.
chr1	915089	.	A	.	.	LowGQX	END=915103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	915104	.	G	.	.	LowGQX	END=915105	GT	./.
chr1	915106	.	A	.	.	LowGQX	END=915117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	915118	.	A	.	.	LowGQX	.	GT	./.
chr1	915119	.	C	.	.	LowGQX	END=915137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	915138	.	C	.	.	LowGQX	.	GT	./.
chr1	915139	.	T	.	.	LowGQX	END=915147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	915148	.	G	.	.	LowGQX	.	GT	./.
chr1	915149	.	C	.	.	LowGQX	END=915152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	915153	.	T	.	.	LowGQX	.	GT	./.
chr1	915154	.	G	.	.	LowGQX	END=915196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	915197	.	C	.	.	LowGQX	.	GT	./.
chr1	915198	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	915199	.	G	.	.	LowGQX	.	GT	./.
chr1	915200	.	G	.	.	LowGQX	END=915209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	915210	.	A	.	.	LowGQX	END=915321	GT	./.
chr1	915322	.	G	.	.	LowGQX	END=915340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:22
chr1	915341	.	C	.	.	LowGQX	.	GT	./.
chr1	915342	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:22
chr1	915343	.	C	.	.	LowGQX	.	GT	./.
chr1	915344	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:22
chr1	915345	.	G	.	.	LowGQX	.	GT	./.
chr1	915346	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:22
chr1	915347	.	C	.	.	LowGQX	.	GT	./.
chr1	915348	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:22
chr1	915349	.	G	.	.	LowGQX	END=915351	GT	./.
chr1	915352	.	T	.	.	LowGQX	END=915353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:22
chr1	915354	.	C	.	.	LowGQX	.	GT	./.
chr1	915355	.	G	.	.	LowGQX	END=915359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:22
chr1	915360	.	A	.	.	LowGQX	.	GT	./.
chr1	915361	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:22
chr1	915362	.	A	.	.	LowGQX	END=915363	GT	./.
chr1	915364	.	G	.	.	LowGQX	END=915368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:22
chr1	915369	.	T	.	.	LowGQX	.	GT	./.
chr1	915370	.	G	.	.	LowGQX	END=915374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:22
chr1	915375	.	C	.	.	LowGQX	.	GT	./.
chr1	915376	.	A	.	.	LowGQX	END=915379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:22
chr1	915380	.	C	.	.	LowGQX	END=915461	GT	./.
chr1	915462	.	A	.	.	LowGQX	END=915470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:22
chr1	915471	.	C	.	.	LowGQX	.	GT	./.
chr1	915472	.	A	.	.	LowGQX	END=915476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:22
chr1	915477	.	C	.	.	LowGQX	.	GT	./.
chr1	915478	.	C	.	.	LowGQX	END=915484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:22
chr1	915485	.	G	.	.	LowGQX	.	GT	./.
chr1	915486	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:22
chr1	915487	.	T	.	.	LowGQX	.	GT	./.
chr1	915488	.	G	.	.	LowGQX	END=915490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:22
chr1	915491	.	G	.	.	LowGQX	.	GT	./.
chr1	915492	.	C	.	.	LowGQX	END=915493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:22
chr1	915494	.	C	.	.	LowGQX	.	GT	./.
chr1	915495	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:22
chr1	915496	.	G	.	.	LowGQX	END=915498	GT	./.
chr1	915499	.	G	.	.	LowGQX	END=915515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:22
chr1	915516	.	C	.	.	LowGQX	END=916037	GT	./.
chr1	916426	.	C	.	.	LowGQX	END=916584	GT	./.
chr1	917421	.	A	.	.	LowGQX	END=917520	GT	./.
chr1	934426	.	C	.	.	LowGQX	END=934814	GT	./.
chr1	934834	.	A	.	.	LowGQX	END=935052	GT	./.
chr1	935060	.	C	.	.	LowGQX	END=935399	GT	./.
chr1	948846	.	T	.	.	LowGQX	END=949005	GT	./.
chr1	949362	.	A	.	.	LowGQX	END=949363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949364	.	G	.	.	LowGQX	.	GT	./.
chr1	949365	.	G	.	.	LowGQX	END=949366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949367	.	T	.	.	LowGQX	.	GT	./.
chr1	949368	.	G	.	.	LowGQX	END=949372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949373	.	C	.	.	LowGQX	.	GT	./.
chr1	949374	.	T	.	.	LowGQX	END=949377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949378	.	G	.	.	LowGQX	.	GT	./.
chr1	949379	.	G	.	.	LowGQX	END=949388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949389	.	T	.	.	LowGQX	END=949390	GT	./.
chr1	949391	.	G	.	.	LowGQX	END=949396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949397	.	A	.	.	LowGQX	.	GT	./.
chr1	949398	.	A	.	.	LowGQX	END=949402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949403	.	T	.	.	LowGQX	.	GT	./.
chr1	949404	.	T	.	.	LowGQX	END=949405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949406	.	C	.	.	LowGQX	END=949407	GT	./.
chr1	949408	.	G	.	.	LowGQX	END=949411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949412	.	T	.	.	LowGQX	END=949413	GT	./.
chr1	949414	.	C	.	.	LowGQX	END=949415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949416	.	T	.	.	LowGQX	.	GT	./.
chr1	949417	.	G	.	.	LowGQX	END=949418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949419	.	G	.	.	LowGQX	.	GT	./.
chr1	949420	.	C	.	.	LowGQX	END=949422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949423	.	C	.	.	LowGQX	END=949425	GT	./.
chr1	949426	.	C	.	.	LowGQX	END=949427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949428	.	T	.	.	LowGQX	.	GT	./.
chr1	949429	.	G	.	.	LowGQX	END=949433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949434	.	T	.	.	LowGQX	.	GT	./.
chr1	949435	.	G	.	.	LowGQX	END=949439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949440	.	A	.	.	LowGQX	.	GT	./.
chr1	949441	.	G	.	.	LowGQX	END=949444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949445	.	A	.	.	LowGQX	.	GT	./.
chr1	949446	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949447	.	G	.	.	LowGQX	.	GT	./.
chr1	949448	.	G	.	.	LowGQX	END=949458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949459	.	C	.	.	LowGQX	END=949460	GT	./.
chr1	949461	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949462	.	G	.	.	LowGQX	.	GT	./.
chr1	949463	.	A	.	.	LowGQX	END=949466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	949467	.	T	.	.	LowGQX	END=949860	GT	./.
chr1	955442	.	C	.	.	LowGQX	END=955473	GT	./.
chr1	955474	.	C	.	.	LowGQX	END=955568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	955569	.	A	.	.	LowGQX	END=955578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	955579	.	G	.	.	LowGQX	END=955596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	955597	.	G	T	208.47	LowGQ;LowGQX	BaseQRankSum=0.747;DP=8;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.747;QD=26.06;ReadPosRankSum=0.747;SB=-78.51	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,7:8:18.06:241,18,0:60:18:0.875
chr1	955598	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	955599	.	T	.	.	PASS	END=955601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	955602	.	T	.	.	PASS	END=955618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chr1	955619	.	G	.	.	PASS	END=955662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:39:60
chr1	955663	.	G	.	.	PASS	END=955700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:60
chr1	955701	.	C	.	.	PASS	END=955724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:57:60
chr1	955725	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:40:27:60
chr1	955726	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:63:60
chr1	955727	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:40:18:60
chr1	955728	.	C	.	.	PASS	END=955750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr1	955751	.	A	.	.	PASS	END=955752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	955753	.	G	.	.	PASS	END=955754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr1	955755	.	T	.	.	PASS	END=955774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:60
chr1	955775	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:33:60
chr1	955776	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:1:60
chr1	955777	.	T	.	.	PASS	END=955817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	955818	.	A	.	.	PASS	END=955823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	955824	.	T	.	.	LowGQX	END=955825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:21:60
chr1	955826	.	G	.	.	PASS	END=955828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	955829	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	955830	.	C	.	.	PASS	END=955832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	955833	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	955834	.	C	.	.	PASS	END=955836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	955837	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	955838	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	955839	.	G	.	.	LowGQX	END=955850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	955851	.	C	.	.	LowGQX	END=955854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	955855	.	C	.	.	LowGQX	END=955857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	955858	.	T	.	.	LowGQX	END=955861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	957530	.	G	.	.	PASS	END=957536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr1	957537	.	C	.	.	PASS	END=957557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	957558	.	A	.	.	PASS	END=957596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	957597	.	A	.	.	PASS	END=957616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	957617	.	G	.	.	PASS	END=957748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	957749	.	C	.	.	PASS	END=957766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	957767	.	A	.	.	PASS	END=957797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:84:60
chr1	957798	.	G	.	.	PASS	END=957814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	957815	.	C	.	.	PASS	END=957831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	957832	.	C	.	.	PASS	END=957838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	957839	.	G	.	.	PASS	END=957840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	957841	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:45:60
chr1	957842	.	G	.	.	PASS	END=957843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	957844	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:39:60
chr1	957845	.	G	.	.	PASS	END=957850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	957851	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:42:61
chr1	957852	.	G	.	.	PASS	END=957857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:61
chr1	957858	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:61
chr1	957859	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:61
chr1	957860	.	C	.	.	LowGQX	END=957861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:61
chr1	957862	.	T	.	36.01	LowGQX	DP=9;MQ=61;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:9:6.02:61:6
chr1	957863	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:61
chr1	957864	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:9:61
chr1	957865	.	G	.	.	LowGQX	END=957866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:61
chr1	957867	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:61
chr1	957868	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:61
chr1	957869	.	G	.	.	LowGQX	END=957870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:61
chr1	957871	.	C	.	.	LowGQX	END=957872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:62
chr1	957873	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:62
chr1	957874	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:62
chr1	957875	.	G	.	.	PASS	END=957879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:61
chr1	957880	.	T	.	39.02	LowGQX	DP=9;MQ=61;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:9:9.03:61:9
chr1	957881	.	C	.	.	LowGQX	END=957883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:61
chr1	957884	.	G	.	.	PASS	END=957885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:61
chr1	957886	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:61
chr1	957887	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:61
chr1	957888	.	G	.	.	LowGQX	END=957889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:61
chr1	957890	.	G	.	.	PASS	END=957893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:61
chr1	970606	.	A	.	.	PASS	END=970622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	970623	.	G	.	.	PASS	END=970656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	970657	.	A	.	.	PASS	END=970745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	970746	.	A	.	.	PASS	END=970755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	975994	.	C	.	.	PASS	END=976055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	976056	.	A	.	.	PASS	END=976149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	976150	.	T	.	.	PASS	END=976187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	976188	.	A	.	.	PASS	END=976222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	976223	.	G	.	.	PASS	END=976244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:84:60
chr1	976245	.	A	.	.	PASS	END=976254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr1	976255	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:72:60
chr1	976256	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:99:60
chr1	976257	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:66:60
chr1	976258	.	G	.	.	PASS	END=976261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	976262	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:51:60
chr1	976263	.	G	.	.	PASS	END=976264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	976265	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:99:60
chr1	976266	.	C	.	.	PASS	END=976267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr1	976268	.	G	.	.	PASS	END=976276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	976277	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:42:60
chr1	976278	.	G	.	.	PASS	END=976279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	976280	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:33:60
chr1	976281	.	G	.	.	PASS	END=976282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	976283	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:3:60
chr1	976284	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:45:60
chr1	976285	.	G	.	.	PASS	END=976288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	976289	.	C	.	.	PASS	END=976291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	976292	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:60:60
chr1	976293	.	G	.	.	PASS	END=976298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	976299	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:60
chr1	976300	.	G	.	.	PASS	END=976311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	976502	.	C	.	.	PASS	END=976513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	976514	.	C	A	797.63	SB	DP=28;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.5589;MQ=60;MQ0=0;QD=28.49;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,24:28:66.20:831,66,0:60:66:1.000
chr1	976515	.	G	.	.	PASS	END=976530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	976531	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:42:60
chr1	976532	.	C	.	.	PASS	END=976537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	976538	.	A	.	.	PASS	END=976539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:57:60
chr1	976540	.	G	.	.	PASS	END=976561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	976562	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:57:60
chr1	976563	.	C	.	.	PASS	END=976597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:83:60
chr1	976598	.	C	.	.	PASS	END=976606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	976607	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:76:60
chr1	976608	.	C	.	.	PASS	END=976725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:80:60
chr1	976726	.	C	.	.	PASS	END=976730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	976731	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:66:60
chr1	976732	.	T	.	.	PASS	END=976807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	976808	.	C	.	.	PASS	END=976830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	976831	.	G	.	.	PASS	END=976875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	976876	.	T	.	.	PASS	END=976968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	976969	.	C	.	.	PASS	END=977011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	977012	.	C	.	.	PASS	END=977028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	977029	.	C	.	.	PASS	END=977038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	977039	.	T	.	.	PASS	END=977067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	977068	.	A	.	.	PASS	END=977069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:96:60
chr1	977070	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:72:61
chr1	977071	.	G	.	.	PASS	END=977077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:61
chr1	977078	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:63:61
chr1	977079	.	C	.	.	PASS	END=977083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:61
chr1	977084	.	T	.	.	PASS	END=977091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:61
chr1	977092	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:60:62
chr1	977093	.	C	.	.	PASS	END=977102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:62
chr1	977103	.	A	.	.	PASS	END=977104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:63
chr1	977105	.	G	.	.	PASS	END=977107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:81:61
chr1	977108	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:60:61
chr1	977109	.	C	.	.	PASS	END=977116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:61
chr1	977117	.	T	.	.	PASS	END=977118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:61
chr1	977119	.	C	.	.	PASS	END=977120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:61
chr1	977121	.	A	.	.	PASS	END=977122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:61
chr1	977123	.	G	.	.	PASS	END=977124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:61
chr1	977125	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:51:61
chr1	977126	.	C	.	.	PASS	END=977130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:61
chr1	977131	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:48:62
chr1	977132	.	G	.	.	PASS	END=977133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:62
chr1	977285	.	G	.	.	PASS	END=977303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:61
chr1	977304	.	C	.	.	PASS	END=977321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:61
chr1	977322	.	C	.	.	PASS	END=977329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	977330	.	T	C	6472.45	PASS	DP=233;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=8.6175;MQ=60;MQ0=0;QD=27.78;SB=-2876.64	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,233:233:99:6472,485,0:60:99:1.000
chr1	977331	.	C	.	.	PASS	END=977454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	977455	.	G	.	.	PASS	END=977471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	977472	.	T	.	.	PASS	END=977491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	977492	.	C	.	.	PASS	END=977526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	977527	.	C	.	.	PASS	END=977564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	977565	.	C	.	.	PASS	END=977569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	977570	.	G	A	2031.46	PASS	DP=63;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;QD=32.25;SB=-208.13	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,62:63:99:2064,160,0:60:99:1.000
chr1	977571	.	G	.	.	PASS	END=977588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	977589	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:63:60
chr1	977590	.	C	.	.	PASS	END=977593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	978568	.	T	.	.	PASS	END=978573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	978574	.	G	.	.	PASS	END=978582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	978583	.	G	.	.	PASS	END=978591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	978592	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:60:60
chr1	978593	.	C	.	.	PASS	END=978594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	978595	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:75:60
chr1	978596	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:55:60
chr1	978597	.	T	.	.	PASS	END=978610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:83:60
chr1	978611	.	C	.	.	PASS	END=978622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	978623	.	G	.	.	PASS	END=978649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	978650	.	G	.	.	PASS	END=978699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	978700	.	A	.	.	PASS	END=978802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	978803	.	G	.	.	PASS	END=978889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	978890	.	T	.	.	PASS	END=978920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	978921	.	G	.	.	PASS	END=978938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	978939	.	T	.	.	PASS	END=978995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:60
chr1	978996	.	C	.	.	PASS	END=979071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:272:99:60
chr1	979072	.	A	.	.	PASS	END=979106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	979107	.	C	.	.	PASS	END=979145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	979146	.	T	.	.	PASS	END=979239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	979240	.	G	.	.	PASS	END=979260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	979261	.	G	.	.	PASS	END=979391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	979392	.	C	.	.	PASS	END=979415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	979416	.	A	.	.	PASS	END=979517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	979518	.	G	.	.	PASS	END=979631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	979632	.	A	.	.	PASS	END=979690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	979691	.	C	.	.	PASS	END=979794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	979795	.	G	.	.	PASS	END=979801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	979802	.	C	.	.	PASS	END=979858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	979859	.	C	.	.	PASS	END=979870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:84:60
chr1	980490	.	G	.	.	PASS	END=980496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	980497	.	G	.	.	PASS	END=980500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:61
chr1	980501	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:63:61
chr1	980502	.	G	.	.	PASS	END=980521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	980522	.	C	.	.	PASS	END=980559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	980560	.	G	.	.	PASS	END=980572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	980573	.	C	.	.	PASS	END=980664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	980665	.	C	.	.	PASS	END=980721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	980722	.	C	.	.	PASS	END=980801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	980802	.	G	.	.	PASS	END=980894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	980895	.	G	.	.	PASS	END=980924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	980925	.	T	.	.	PASS	END=980954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	981062	.	G	.	.	PASS	END=981086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	981087	.	A	G	6894.52	PASS	DP=244;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=21.8846;MQ=60;MQ0=0;QD=28.26;SB=-2901.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,243:244:99:6895,518,0:60:99:1.000
chr1	981088	.	C	.	.	PASS	END=981198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	981199	.	C	.	.	PASS	END=981294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	981295	.	T	.	291.82	PASS	DP=192;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:151:192:99:60:99
chr1	981296	.	G	.	.	PASS	END=981299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	981300	.	T	.	273.72	PASS	DP=188;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:138:188:99:60:99
chr1	981301	.	G	.	.	PASS	END=981363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	981364	.	T	.	.	PASS	END=981451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	981452	.	A	.	.	PASS	END=981546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	981547	.	G	.	.	PASS	END=981615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	981616	.	T	.	.	PASS	END=981694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:90:60
chr1	981695	.	T	.	.	PASS	END=981696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	981726	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:99:60
chr1	981727	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:64:66:60
chr1	981728	.	C	.	.	PASS	END=981731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	981732	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:69:62:60
chr1	981733	.	C	.	.	PASS	END=981759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:86:60
chr1	981760	.	C	.	.	PASS	END=981782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	981783	.	T	.	.	PASS	END=981808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	981809	.	G	.	.	PASS	END=981829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	981830	.	C	.	.	PASS	END=981868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	981869	.	G	.	.	PASS	END=981875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	981876	.	T	.	273.75	PASS	DP=147;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:114:147:99:60:99
chr1	981877	.	C	.	.	PASS	END=981903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	981904	.	C	.	.	PASS	END=981930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	981931	.	A	G	6285.92	PASS	DP=210;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=48.4889;MQ=60;MQ0=0;QD=29.93;SB=-2874.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,206:210:99:6286,488,0:60:99:1.000
chr1	981932	.	C	.	.	PASS	END=981965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	981966	.	C	.	.	PASS	END=982076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:278:99:60
chr1	982077	.	T	.	.	PASS	END=982116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	982117	.	T	.	.	PASS	END=982150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	982151	.	G	.	.	PASS	END=982301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr1	982302	.	C	.	.	PASS	END=982333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	982334	.	C	.	.	PASS	END=982358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	982359	.	G	.	.	PASS	END=982372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	982373	.	A	.	.	PASS	END=982388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	982656	.	C	.	.	PASS	END=982687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	982688	.	C	.	.	PASS	END=982716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	982717	.	G	.	.	PASS	END=982841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	982842	.	G	.	.	PASS	END=982885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	982902	.	G	.	.	PASS	END=982940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	982941	.	T	C	6190.41	PASS	DP=208;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=34.1395;MQ=60;MQ0=0;QD=29.76;SB=-3307.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,208:208:99:6190,478,0:60:99:1.000
chr1	982942	.	C	.	.	PASS	END=982993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	982994	.	T	C	6409.69	PASS	DP=213;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=31.3940;MQ=60;MQ0=0;QD=30.09;SB=-3243.03	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,210:213:99:6410,500,0:60:99:1.000
chr1	982995	.	C	.	.	PASS	END=983060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	983061	.	G	.	.	PASS	END=983278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	983279	.	A	.	.	PASS	END=983326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	983341	.	C	.	.	PASS	END=983380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	983381	.	T	.	.	PASS	END=983423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	983424	.	T	.	.	PASS	END=983516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	983517	.	C	.	.	PASS	END=983550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	983551	.	C	.	.	PASS	END=983563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	983564	.	T	.	195.51	PASS	DP=127;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:101:127:99:60:99
chr1	983565	.	C	.	.	PASS	END=983661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	983662	.	G	.	.	PASS	END=983678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	983679	.	T	.	.	PASS	END=983702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	983703	.	T	.	.	PASS	END=983731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	983732	.	C	.	.	PASS	END=983752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	983753	.	T	.	.	PASS	END=983761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	983762	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:84:60
chr1	983763	.	A	.	.	PASS	END=983767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	983768	.	A	.	.	PASS	END=983776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	983777	.	A	.	.	PASS	END=983778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	983779	.	G	.	.	PASS	END=983780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	983781	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	983782	.	G	.	.	PASS	END=983785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	983786	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	983787	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	983788	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:1:60
chr1	983789	.	G	.	.	PASS	END=983796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	984196	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	984197	.	G	.	.	LowGQX	END=984199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	984200	.	G	.	.	LowGQX	END=984202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:60
chr1	984203	.	T	.	.	LowGQX	END=984208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	984209	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	984210	.	A	.	48.05	LowGQX	DP=10;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:10:18.06:60:18
chr1	984211	.	G	.	.	LowGQX	END=984217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	984218	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	984219	.	A	.	.	LowGQX	END=984220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	984221	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	984222	.	C	.	.	LowGQX	END=984224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	984225	.	C	.	.	PASS	END=984231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	984232	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	984233	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	984234	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	984235	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:60
chr1	984236	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	984237	.	C	.	.	PASS	END=984240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	984241	.	T	.	.	PASS	END=984247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	984248	.	G	.	.	PASS	END=984255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	984256	.	C	.	.	PASS	END=984275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	984276	.	G	.	.	PASS	END=984284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	984285	.	T	.	.	PASS	END=984300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	984301	.	C	.	.	PASS	END=984398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	984399	.	T	.	.	PASS	END=984426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	984427	.	G	.	.	PASS	END=984437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:59
chr1	984438	.	A	.	.	PASS	END=984441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:59
chr1	984442	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:63:59
chr1	984443	.	G	.	.	PASS	END=984449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:58
chr1	984450	.	A	.	81.14	PASS	DP=41;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:32:41:51.15:58:51
chr1	984451	.	G	.	.	PASS	END=984453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:58
chr1	984454	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:75:58
chr1	984455	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:57:58
chr1	984456	.	C	.	.	PASS	END=984461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:58
chr1	984462	.	C	.	.	PASS	END=984465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:58
chr1	984466	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	984467	.	C	.	.	LowGQX	END=984470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:57
chr1	984471	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:6:57
chr1	984472	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:57
chr1	984473	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:6:56
chr1	984474	.	G	.	.	LowGQX	END=984475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:56
chr1	984476	.	T	.	42.03	LowGQX	DP=8;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:8:12.04:56:12
chr1	984477	.	G	.	.	LowGQX	END=984479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:56
chr1	984480	.	C	.	.	LowGQX	END=984481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:56
chr1	984482	.	G	.	.	LowGQX	END=984484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:56
chr1	984485	.	A	.	36.01	LowGQX	DP=7;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:7:6.02:56:6
chr1	984486	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:56
chr1	984487	.	G	.	.	LowGQX	END=984489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:55
chr1	984490	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:55
chr1	984565	.	G	.	.	PASS	END=984570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	984571	.	G	.	.	PASS	END=984578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:84:60
chr1	984579	.	C	.	.	PASS	END=984588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	984589	.	G	.	.	PASS	END=984621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	984622	.	C	.	.	PASS	END=984713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	984714	.	G	.	.	PASS	END=984773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	984774	.	G	.	.	PASS	END=984837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	984838	.	C	.	.	PASS	END=984870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	984871	.	C	.	.	PASS	END=984882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	984895	.	G	.	.	PASS	END=984920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	984921	.	G	.	.	PASS	END=985004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	985005	.	T	.	.	PASS	END=985081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	985082	.	C	.	.	PASS	END=985143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	985144	.	G	.	.	PASS	END=985197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	985198	.	T	.	.	PASS	END=985224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	985225	.	C	.	.	PASS	END=985226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	985232	.	C	.	.	PASS	END=985272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	985273	.	C	.	.	PASS	END=985354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	985355	.	T	.	.	PASS	END=985382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	985383	.	C	.	.	PASS	END=985406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	985407	.	C	.	.	PASS	END=985425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	985426	.	C	.	.	PASS	END=985442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	985443	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:62:60
chr1	985443	.	AG	A	506.25	SB	BaseQRankSum=0.529;DP=49;FS=49.945;HRun=15;HaplotypeScore=293.6079;MQ=60;MQ0=0;MQRankSum=-0.188;QD=10.33;ReadPosRankSum=0.973;SB=-0.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,18:49:99:545,0,160:60:99:0.375
chr1	985444	.	G	.	117.23	PASS	DP=67;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:48:49:87.24:60:87
chr1	985445	.	G	.	.	PASS	END=985448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	985449	.	G	A	128.28	LowQD	BaseQRankSum=0.918;DP=70;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=79.9965;MQ=60;MQ0=0;MQRankSum=0.834;QD=1.83;ReadPosRankSum=1.001;SB=-24.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:51,13:70:99:158,0,621:60:99:0.203
chr1	985450	.	G	A	301.99	SB	BaseQRankSum=1.114;DP=73;Dels=0.00;FS=16.163;HRun=0;HaplotypeScore=86.6118;MQ=60;MQ0=0;MQRankSum=0.376;QD=4.14;ReadPosRankSum=4.402;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:41,20:73:99:332,0,549:60:99:0.328
chr1	985451	.	G	.	.	PASS	END=985468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:81:60
chr1	985562	.	T	.	.	PASS	END=985627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	985628	.	G	.	.	PASS	END=985711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	985712	.	C	.	.	PASS	END=985787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:84:60
chr1	985788	.	C	.	.	PASS	END=985813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	985814	.	A	.	.	PASS	END=985944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	985945	.	C	.	.	PASS	END=985972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	985973	.	T	.	.	PASS	END=986022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	986055	.	T	.	.	PASS	END=986070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	986071	.	G	.	.	PASS	END=986122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	986123	.	C	.	.	PASS	END=986188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	986189	.	A	.	.	PASS	END=986220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	986221	.	A	.	.	PASS	END=986246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	986247	.	C	.	.	PASS	END=986268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	986368	.	T	.	.	PASS	END=986372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	986373	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:30:60
chr1	986374	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:27:60
chr1	986375	.	T	.	.	PASS	END=986386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr1	986387	.	A	.	.	PASS	END=986391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	986392	.	A	.	.	PASS	END=986394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	986395	.	C	.	.	PASS	END=986404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	986405	.	A	.	.	PASS	END=986423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	986424	.	G	.	.	PASS	END=986429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	986430	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:39:60
chr1	986431	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:6:60
chr1	986432	.	G	.	.	PASS	END=986436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	986437	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:3:60
chr1	986438	.	T	.	.	PASS	END=986442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	986443	.	C	T	356.97	PASS	DP=13;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;QD=27.46;SB=-117.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,13:13:30.10:390,30,0:60:30:1.000
chr1	986444	.	G	.	.	PASS	END=986445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	986446	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:15:60
chr1	986447	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr1	986448	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	986449	.	C	.	.	PASS	END=986452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	986453	.	C	.	.	PASS	END=986465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	986466	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr1	986467	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:54:60
chr1	986582	.	G	.	.	PASS	END=986603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	986604	.	G	.	.	PASS	END=986645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	986646	.	T	.	.	PASS	END=986669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	986670	.	A	.	.	PASS	END=986730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	986731	.	C	.	.	PASS	END=986799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	986800	.	C	.	.	PASS	END=986971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	986972	.	C	.	.	PASS	END=987069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	987070	.	A	.	.	PASS	END=987189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	987190	.	C	.	.	PASS	END=987199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	987200	.	C	T	5074.91	PASS	DP=184;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=15.1932;MQ=60;MQ0=0;QD=27.58;SB=-1663.66	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,182:184:99:5075,394,0:60:99:1.000
chr1	987201	.	G	.	.	PASS	END=987228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	987229	.	A	.	.	PASS	END=987246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	987335	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:66:60
chr1	987336	.	C	.	.	PASS	END=987352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	987353	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:57:60
chr1	987354	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:99:60
chr1	987355	.	T	.	.	PASS	END=987356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	987357	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:60:60
chr1	987358	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:96:60
chr1	987359	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:66:60
chr1	987360	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:90:60
chr1	987361	.	T	.	.	PASS	END=987365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	987366	.	T	.	.	PASS	END=987367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:48:60
chr1	987368	.	C	.	.	PASS	END=987370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	987371	.	A	.	.	PASS	END=987372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:60
chr1	987373	.	C	.	.	PASS	END=987375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	987376	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:54:60
chr1	987377	.	C	.	.	PASS	END=987381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	987382	.	C	.	.	PASS	END=987383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	987384	.	A	.	.	PASS	END=987389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	987390	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:51:60
chr1	987391	.	C	.	.	PASS	END=987395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	987396	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:36:60
chr1	987397	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:63:60
chr1	987398	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:36:60
chr1	987399	.	G	.	.	PASS	END=987403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	987404	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:72:60
chr1	987405	.	A	.	.	PASS	END=987407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	987408	.	T	.	.	PASS	END=987411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	987412	.	C	.	.	PASS	END=987426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	987427	.	C	.	.	PASS	END=987433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	987434	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	988807	.	T	.	.	LowGQX	END=988809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	988810	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	988811	.	C	.	.	LowGQX	END=988819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	988820	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	988821	.	C	.	.	LowGQX	END=988824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	988825	.	T	.	.	LowGQX	END=988827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	988828	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	988829	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	988830	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	988831	.	T	.	.	LowGQX	END=988833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	988834	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	988835	.	T	.	.	LowGQX	END=988838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	988839	.	A	.	.	LowGQX	END=988845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	988846	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	988847	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr1	988848	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	988849	.	C	.	.	LowGQX	END=988859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	988860	.	G	.	.	LowGQX	END=988862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	988863	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	988864	.	C	.	.	LowGQX	END=988866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	988867	.	T	.	.	LowGQX	END=988871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	988872	.	A	.	.	LowGQX	END=988876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	988877	.	A	.	13.68	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.10:60:0
chr1	988878	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	988879	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	988880	.	A	.	42.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.03:60:12
chr1	988881	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	988882	.	G	.	.	LowGQX	END=988883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	988884	.	G	.	.	LowGQX	END=988886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	988887	.	A	.	.	LowGQX	END=988888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	988889	.	C	.	.	LowGQX	END=988893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	988894	.	C	.	.	LowGQX	END=988895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	988896	.	T	.	.	LowGQX	END=988898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	988899	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	988900	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	988901	.	A	.	.	LowGQX	END=988904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	988905	.	C	.	.	LowGQX	END=988906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	989082	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:75:60
chr1	989083	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr1	989084	.	G	.	.	PASS	END=989086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	989087	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:81:60
chr1	989088	.	T	.	.	PASS	END=989090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	989091	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:81:60
chr1	989092	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:30:60
chr1	989093	.	C	.	.	PASS	END=989094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	989095	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:45:60
chr1	989096	.	C	.	.	PASS	END=989098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	989099	.	T	.	.	PASS	END=989107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	989108	.	C	.	.	PASS	END=989130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	989131	.	A	.	.	PASS	END=989153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	989154	.	C	.	.	PASS	END=989174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	989175	.	C	.	.	PASS	END=989208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	989209	.	G	.	.	PASS	END=989317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	989318	.	C	.	.	PASS	END=989357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	989358	.	G	.	.	PASS	END=989381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	989382	.	A	.	.	PASS	END=989391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:95:60
chr1	989392	.	C	.	.	PASS	END=989408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	989777	.	A	.	.	PASS	END=989815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:85:60
chr1	989816	.	C	.	.	PASS	END=989843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	989844	.	T	.	.	PASS	END=989882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	989883	.	T	.	.	PASS	END=989949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	989950	.	C	.	.	PASS	END=989982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	990153	.	C	.	.	PASS	END=990209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	990210	.	T	.	.	PASS	END=990227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	990228	.	G	.	.	PASS	END=990249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	990250	.	C	.	.	PASS	END=990318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	990319	.	C	.	.	PASS	END=990366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	990367	.	C	.	.	PASS	END=990379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	990380	.	C	T	5723.27	PASS	BaseQRankSum=-2.156;DP=234;Dels=0.00;FS=6.086;HRun=0;HaplotypeScore=23.7682;MQ=60;MQ0=0;MQRankSum=0.632;QD=24.46;ReadPosRankSum=0.355;SB=-3526.98	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:3,229:234:99:5723,330,0:60:99:0.987
chr1	990381	.	G	.	.	PASS	END=990412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	1007185	.	A	.	.	LowGQX	END=1007610	GT	./.
chr1	1007611	.	G	.	.	LowGQX	END=1007670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007671	.	A	.	.	LowGQX	.	GT	./.
chr1	1007672	.	C	.	.	LowGQX	END=1007696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007697	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	1007698	.	C	.	.	LowGQX	END=1007759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1007760	.	T	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	1007761	.	G	.	.	LowGQX	END=1007762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	1007763	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	1007764	.	G	.	.	LowGQX	END=1007768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1007769	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	1007770	.	G	.	.	LowGQX	END=1007779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1007780	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	1007781	.	A	.	.	LowGQX	END=1007782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1007783	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	1007784	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	1007785	.	A	.	.	LowGQX	END=1007789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1007790	.	T	.	.	LowGQX	.	GT	./.
chr1	1007791	.	G	.	.	LowGQX	END=1007792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1007793	.	A	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr1	1007794	.	G	.	.	LowGQX	END=1007807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1007808	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	1007809	.	G	.	.	LowGQX	END=1007835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007836	.	A	.	.	LowGQX	END=1007837	GT	./.
chr1	1007838	.	G	.	.	LowGQX	END=1007839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007840	.	G	.	.	LowGQX	END=1007842	GT	./.
chr1	1007843	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007844	.	T	.	.	LowGQX	.	GT	./.
chr1	1007845	.	G	.	.	LowGQX	END=1007847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007848	.	G	.	.	LowGQX	.	GT	./.
chr1	1007849	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007850	.	T	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	1007851	.	G	.	.	LowGQX	.	GT	./.
chr1	1007852	.	C	.	.	LowGQX	END=1007856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007857	.	C	.	.	LowGQX	END=1007858	GT	./.
chr1	1007859	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007860	.	G	.	.	LowGQX	END=1007863	GT	./.
chr1	1007864	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007865	.	G	.	.	LowGQX	END=1007866	GT	./.
chr1	1007867	.	G	.	.	LowGQX	END=1007870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007871	.	T	.	.	LowGQX	END=1007872	GT	./.
chr1	1007873	.	G	.	.	LowGQX	END=1007874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007875	.	C	.	.	LowGQX	.	GT	./.
chr1	1007876	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007877	.	T	.	.	LowGQX	.	GT	./.
chr1	1007878	.	C	.	.	LowGQX	END=1007882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007883	.	C	.	.	LowGQX	.	GT	./.
chr1	1007884	.	T	.	.	LowGQX	END=1007885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007886	.	T	.	.	LowGQX	.	GT	./.
chr1	1007887	.	G	.	.	LowGQX	END=1007888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007889	.	A	.	.	LowGQX	.	GT	./.
chr1	1007890	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007891	.	C	.	.	LowGQX	.	GT	./.
chr1	1007892	.	T	.	.	LowGQX	END=1007894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007895	.	T	.	.	LowGQX	.	GT	./.
chr1	1007896	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007897	.	C	.	.	LowGQX	.	GT	./.
chr1	1007898	.	G	.	.	LowGQX	END=1007907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1007908	.	T	.	.	LowGQX	END=1007954	GT	./.
chr1	1018210	.	C	.	.	LowGQX	END=1018220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1018221	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	1018222	.	C	.	.	LowGQX	END=1018226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	1018227	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	1018228	.	C	.	.	LowGQX	END=1018232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1018233	.	T	.	5.79	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr1	1018234	.	C	.	.	LowGQX	END=1018258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1018259	.	T	.	.	LowGQX	.	GT	./.
chr1	1018260	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1018261	.	T	.	.	LowGQX	.	GT	./.
chr1	1018262	.	C	.	.	LowGQX	END=1018369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019286	.	G	.	.	LowGQX	.	GT	./.
chr1	1019287	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019288	.	T	.	.	LowGQX	.	GT	./.
chr1	1019289	.	C	.	.	LowGQX	END=1019292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019293	.	A	.	.	LowGQX	END=1019295	GT	./.
chr1	1019296	.	G	.	.	LowGQX	END=1019298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019299	.	C	.	.	LowGQX	.	GT	./.
chr1	1019300	.	T	.	.	LowGQX	END=1019308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019309	.	G	.	.	LowGQX	.	GT	./.
chr1	1019310	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019311	.	T	.	.	LowGQX	.	GT	./.
chr1	1019312	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019313	.	C	.	.	LowGQX	.	GT	./.
chr1	1019314	.	G	.	.	LowGQX	END=1019321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019322	.	C	.	.	LowGQX	END=1019323	GT	./.
chr1	1019324	.	G	.	.	LowGQX	END=1019327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019328	.	C	.	.	LowGQX	.	GT	./.
chr1	1019329	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019330	.	C	.	.	LowGQX	.	GT	./.
chr1	1019331	.	T	.	.	LowGQX	END=1019333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019334	.	A	.	.	LowGQX	.	GT	./.
chr1	1019335	.	G	.	.	LowGQX	END=1019338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019339	.	T	.	.	LowGQX	END=1019340	GT	./.
chr1	1019341	.	G	.	.	LowGQX	END=1019346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019347	.	C	.	.	LowGQX	.	GT	./.
chr1	1019348	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019349	.	G	.	.	LowGQX	.	GT	./.
chr1	1019350	.	G	.	.	LowGQX	END=1019353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019354	.	G	.	.	LowGQX	END=1019355	GT	./.
chr1	1019356	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019357	.	T	.	.	LowGQX	.	GT	./.
chr1	1019358	.	G	.	.	LowGQX	END=1019359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019360	.	C	.	.	LowGQX	.	GT	./.
chr1	1019361	.	G	.	.	LowGQX	END=1019365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019366	.	C	.	.	LowGQX	.	GT	./.
chr1	1019367	.	C	.	.	LowGQX	END=1019369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019370	.	C	.	.	LowGQX	END=1019372	GT	./.
chr1	1019373	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019374	.	G	.	.	LowGQX	END=1019375	GT	./.
chr1	1019376	.	C	.	.	LowGQX	END=1019386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019387	.	T	.	.	LowGQX	.	GT	./.
chr1	1019388	.	G	.	.	LowGQX	END=1019389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1019390	.	A	.	.	LowGQX	END=1019763	GT	./.
chr1	1019810	.	A	.	.	LowGQX	END=1019962	GT	./.
chr1	1020551	.	C	.	.	LowGQX	END=1020710	GT	./.
chr1	1021257	.	C	.	.	LowGQX	END=1021263	GT	./.
chr1	1021264	.	T	.	.	LowGQX	END=1021293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1021294	.	T	.	.	LowGQX	.	GT	./.
chr1	1021295	.	G	.	.	LowGQX	END=1021392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1022442	.	T	.	.	LowGQX	END=1022601	GT	./.
chr1	1022877	.	C	.	.	LowGQX	END=1022900	GT	./.
chr1	1022901	.	G	.	.	LowGQX	END=1022929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1022930	.	A	.	.	LowGQX	.	GT	./.
chr1	1022931	.	G	.	.	LowGQX	END=1022962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1022963	.	A	.	.	LowGQX	.	GT	./.
chr1	1022964	.	G	.	.	LowGQX	END=1022977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1025721	.	A	.	.	LowGQX	END=1025820	GT	./.
chr1	1026200	.	G	.	.	LowGQX	END=1026207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1026208	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	1026209	.	C	.	.	LowGQX	END=1026221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1026222	.	G	.	.	LowGQX	END=1026363	GT	./.
chr1	1026657	.	C	.	.	LowGQX	END=1026756	GT	./.
chr1	1026838	.	A	.	.	LowGQX	END=1026985	GT	./.
chr1	1027336	.	G	.	.	LowGQX	END=1027428	GT	./.
chr1	1027429	.	G	.	.	LowGQX	END=1027435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1078123	.	A	.	.	LowGQX	END=1078127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1078128	.	C	.	.	LowGQX	END=1078130	GT	./.
chr1	1078131	.	C	.	.	LowGQX	END=1078132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1078133	.	T	.	.	LowGQX	END=1078134	GT	./.
chr1	1078135	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1078136	.	A	.	.	LowGQX	END=1078141	GT	./.
chr1	1078142	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1078143	.	G	.	.	LowGQX	.	GT	./.
chr1	1078144	.	G	.	.	LowGQX	END=1078145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1078146	.	C	.	.	LowGQX	.	GT	./.
chr1	1078147	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1078148	.	G	.	.	LowGQX	.	GT	./.
chr1	1078149	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1078150	.	C	.	.	LowGQX	END=1078238	GT	./.
chr1	1078239	.	C	.	.	LowGQX	END=1078248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1078249	.	G	.	.	LowGQX	.	GT	./.
chr1	1078250	.	G	.	.	LowGQX	END=1078269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1078270	.	T	.	.	LowGQX	.	GT	./.
chr1	1078271	.	T	.	.	LowGQX	END=1078301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1078302	.	T	.	.	LowGQX	.	GT	./.
chr1	1078303	.	G	.	.	LowGQX	END=1078305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1078306	.	A	.	.	LowGQX	.	GT	./.
chr1	1078307	.	G	.	.	LowGQX	END=1078308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1078309	.	T	.	.	LowGQX	.	GT	./.
chr1	1078310	.	C	.	.	LowGQX	END=1078318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1078319	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	1078320	.	C	.	.	LowGQX	END=1078326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1078327	.	T	.	.	LowGQX	.	GT	./.
chr1	1078328	.	C	.	.	LowGQX	END=1078387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1078388	.	A	.	.	LowGQX	END=1078536	GT	./.
chr1	1102482	.	A	.	.	LowGQX	END=1102567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1102568	.	A	.	.	LowGQX	.	GT	./.
chr1	1102569	.	G	.	.	LowGQX	END=1102581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	1103178	.	C	.	.	LowGQX	END=1103292	GT	./.
chr1	1103293	.	C	.	.	LowGQX	END=1103329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1103330	.	C	.	.	LowGQX	.	GT	./.
chr1	1103331	.	G	.	.	LowGQX	END=1103337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1104324	.	G	.	.	LowGQX	END=1104363	GT	./.
chr1	1104364	.	C	.	.	LowGQX	END=1104365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1104366	.	C	.	.	LowGQX	.	GT	./.
chr1	1104367	.	G	.	.	LowGQX	END=1104440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1104441	.	T	.	.	LowGQX	END=1104442	GT	./.
chr1	1104443	.	T	.	.	LowGQX	END=1104476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1111010	.	T	.	.	LowGQX	END=1111437	GT	./.
chr1	1111438	.	G	.	.	LowGQX	END=1111457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:54
chr1	1111458	.	C	.	.	LowGQX	.	GT	./.
chr1	1111459	.	C	.	.	LowGQX	END=1111471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:54
chr1	1111472	.	G	.	.	LowGQX	END=1111473	GT	./.
chr1	1111474	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:54
chr1	1111475	.	A	.	.	LowGQX	END=1111476	GT	./.
chr1	1111477	.	A	.	.	LowGQX	END=1111479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:54
chr1	1111480	.	G	.	.	LowGQX	END=1111627	GT	./.
chr1	1111628	.	T	.	.	LowGQX;LowMQ	END=1111662	GT	./.
chr1	1111663	.	G	.	.	LowGQX	END=1111776	GT	./.
chr1	1114595	.	A	.	.	LowGQX	END=1114664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1114665	.	A	.	.	LowGQX	END=1114841	GT	./.
chr1	1114975	.	T	.	.	LowGQX	END=1115126	GT	./.
chr1	1115413	.	G	.	.	LowGQX	END=1115722	GT	./.
chr1	1115861	.	A	.	.	LowGQX	END=1115983	GT	./.
chr1	1116109	.	A	.	.	LowGQX	END=1116179	GT	./.
chr1	1116180	.	T	.	.	LowGQX	END=1116241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1116242	.	T	.	.	LowGQX	.	GT	./.
chr1	1117109	.	C	.	.	LowGQX	END=1117127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1117128	.	A	.	.	LowGQX	.	GT	./.
chr1	1117129	.	A	.	.	LowGQX	END=1117138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1117139	.	A	.	.	LowGQX	.	GT	./.
chr1	1117140	.	G	.	.	LowGQX	END=1117152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1117153	.	A	.	.	LowGQX	.	GT	./.
chr1	1117154	.	G	.	.	LowGQX	END=1117155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1117156	.	A	.	.	LowGQX	.	GT	./.
chr1	1117157	.	C	.	.	LowGQX	END=1117172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1117173	.	C	.	.	LowGQX	.	GT	./.
chr1	1117174	.	C	.	.	LowGQX	END=1117193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1117194	.	A	.	.	LowGQX	END=1117208	GT	./.
chr1	1117734	.	C	.	.	LowGQX	END=1117740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1117741	.	G	.	.	LowGQX	END=1117833	GT	./.
chr1	1118254	.	A	.	.	LowGQX	END=1118429	GT	./.
chr1	1119298	.	A	.	.	LowGQX	END=1119424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1119425	.	T	.	.	LowGQX	END=1119473	GT	./.
chr1	1120327	.	T	.	.	LowGQX	END=1120524	GT	./.
chr1	1131979	.	G	.	.	LowGQX	END=1132096	GT	./.
chr1	1132470	.	C	.	.	LowGQX	END=1132569	GT	./.
chr1	1132806	.	C	.	.	LowGQX	END=1133227	GT	./.
chr1	1138969	.	T	.	.	LowGQX	END=1138990	GT	./.
chr1	1138991	.	G	.	.	LowGQX	END=1139144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1139145	.	A	.	.	LowGQX	END=1139147	GT	./.
chr1	1139148	.	A	.	.	LowGQX	END=1139347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1139348	.	T	.	.	LowGQX	.	GT	./.
chr1	1139349	.	C	.	.	LowGQX	END=1139350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1139412	.	A	.	.	LowGQX	END=1139618	GT	./.
chr1	1139773	.	A	.	.	LowGQX	END=1139872	GT	./.
chr1	1140698	.	C	.	.	LowGQX	END=1140705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1140706	.	A	.	.	LowGQX	.	GT	./.
chr1	1140707	.	C	.	.	LowGQX	END=1140714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1140715	.	C	.	.	LowGQX	END=1140874	GT	./.
chr1	1141743	.	T	.	.	LowGQX	END=1141953	GT	./.
chr1	1146923	.	G	.	.	PASS	END=1146967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	1146968	.	C	.	.	PASS	END=1147056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	1147057	.	A	.	.	PASS	END=1147091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:83:60
chr1	1147092	.	T	.	.	PASS	END=1147093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:63:60
chr1	1147094	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:70:99:60
chr1	1147095	.	T	.	28.15	LowGQX	DP=69;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:44:69:2.18:60:2
chr1	1147096	.	G	.	.	PASS	END=1147099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	1147100	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:69:60
chr1	1147101	.	T	.	78.15	PASS	DP=63;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:36:63:48.15:60:48
chr1	1147102	.	C	.	.	PASS	END=1147147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:96:60
chr1	1147148	.	G	.	.	PASS	END=1147188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	1147189	.	C	.	.	PASS	END=1147225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:77:60
chr1	1147226	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:72:60
chr1	1147227	.	C	.	.	PASS	END=1147230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	1147231	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:75:60
chr1	1147232	.	G	.	.	PASS	END=1147234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	1147235	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:75:60
chr1	1147236	.	G	.	.	PASS	END=1147239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	1147240	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:72:60
chr1	1147241	.	C	.	.	PASS	END=1147242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr1	1147243	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:50:60
chr1	1147244	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:99:60
chr1	1147245	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:59:60
chr1	1147246	.	G	.	.	PASS	END=1147247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr1	1147248	.	A	.	.	PASS	END=1147250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	1147251	.	G	.	.	PASS	END=1147253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	1147254	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:51:60
chr1	1147255	.	C	.	.	PASS	END=1147257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr1	1147258	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:44:60
chr1	1147259	.	T	.	.	PASS	END=1147262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	1147309	.	C	.	.	PASS	END=1147345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	1147346	.	T	.	.	PASS	END=1147392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	1147393	.	G	.	.	PASS	END=1147421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	1147422	.	C	.	.	PASS	END=1147440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	1147441	.	G	.	.	PASS	END=1147475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	1147476	.	A	.	.	PASS	END=1147521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	1147522	.	T	.	.	PASS	END=1147579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:279:99:60
chr1	1147942	.	G	.	.	LowGQX	END=1147943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	1147944	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	1147945	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:60
chr1	1147946	.	C	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	1147947	.	C	.	.	LowGQX	END=1147948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	1147949	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	1147950	.	G	.	.	LowGQX	END=1147952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	1147953	.	C	.	.	LowGQX	END=1147954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	1147955	.	T	.	.	LowGQX	END=1147960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	1147961	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:60
chr1	1147962	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	1147963	.	C	.	.	LowGQX	END=1147964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	1147965	.	T	.	.	LowGQX	END=1147966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	1147967	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	1147968	.	C	.	.	LowGQX	END=1147969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	1147970	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	1147971	.	C	.	.	LowGQX	END=1147974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	1147975	.	A	.	.	LowGQX	END=1147976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	1147977	.	C	.	.	LowGQX	END=1147979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	1147980	.	C	.	.	PASS	END=1147983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	1147984	.	C	.	.	LowGQX	END=1147985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	1147986	.	A	.	45.03	LowGQX	DP=11;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:11:15.04:60:15
chr1	1147987	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	1147988	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	1147989	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	1147990	.	C	.	.	PASS	END=1147991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	1147992	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:60
chr1	1147993	.	C	.	.	PASS	END=1147995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	1147996	.	A	.	42.03	LowGQX	DP=12;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:9:12:12.04:60:12
chr1	1147997	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	1147998	.	C	.	.	PASS	END=1148001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	1148002	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	1148003	.	G	.	.	PASS	END=1148004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	1148005	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	1148006	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	1148007	.	A	.	.	LowGQX	END=1148008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	1148009	.	G	.	.	PASS	END=1148013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	1148014	.	T	.	51.06	LowGQX	DP=12;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:9:12:21.07:60:21
chr1	1148015	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chr1	1148016	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:4:60
chr1	1148017	.	C	.	.	PASS	END=1148020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	1148021	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:63:60
chr1	1148022	.	T	.	.	PASS	END=1148024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	1148025	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:25:60
chr1	1148026	.	G	.	.	PASS	END=1148038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	1148039	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:45:60
chr1	1148040	.	G	.	.	PASS	END=1148041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	1148042	.	T	.	.	PASS	END=1148044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	1148045	.	T	.	.	PASS	END=1148046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	1148047	.	G	.	.	PASS	END=1148049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	1148050	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:39:60
chr1	1148051	.	G	.	.	PASS	END=1148054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	1148055	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	1148056	.	G	.	.	PASS	END=1148065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	1148066	.	G	.	.	PASS	END=1148067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	1148068	.	A	.	.	PASS	END=1148069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	1148070	.	G	.	.	PASS	END=1148074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	1148075	.	G	.	.	PASS	END=1148079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	1148080	.	A	.	.	PASS	END=1148082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	1148083	.	G	.	.	PASS	END=1148088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	1148089	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:42:60
chr1	1148090	.	A	.	.	PASS	END=1148102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	1148103	.	G	.	.	PASS	END=1148119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	1148120	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:60:60
chr1	1148121	.	G	.	.	PASS	END=1148143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	1148144	.	G	.	.	PASS	END=1148155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	1148359	.	C	.	.	PASS	END=1148389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	1148390	.	T	.	.	PASS	END=1148448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	1148449	.	A	.	.	PASS	END=1148487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	1148488	.	G	.	.	PASS	END=1148515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	1148516	.	G	.	.	PASS	END=1148583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	1148584	.	G	.	.	PASS	END=1148610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	1148611	.	C	.	.	PASS	END=1148632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:96:60
chr1	1148633	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:61:60
chr1	1148634	.	G	.	.	PASS	END=1148693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:78:60
chr1	1148694	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:44:60
chr1	1148695	.	C	.	.	PASS	END=1148708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	1148709	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:72:60
chr1	1148710	.	C	.	.	PASS	END=1148711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	1148712	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:35:60
chr1	1148713	.	C	.	.	PASS	END=1148714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	1148715	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:75:60
chr1	1148716	.	C	.	.	PASS	END=1148717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	1148718	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:60
chr1	1148719	.	C	.	.	PASS	END=1148720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	1148721	.	A	.	.	PASS	END=1148722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	1148723	.	C	.	.	PASS	END=1148736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	1148737	.	T	.	.	PASS	END=1148740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	1148741	.	G	.	.	PASS	END=1148746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	1148747	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:57:60
chr1	1148748	.	C	.	.	PASS	END=1148753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	1148754	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:59:60
chr1	1148755	.	G	.	.	PASS	END=1148758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	1148759	.	A	.	.	PASS	END=1148760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	1148761	.	C	.	.	PASS	END=1148766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr1	1148767	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:60
chr1	1148768	.	G	.	.	PASS	END=1148770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	1148771	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:63:60
chr1	1148772	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:84:60
chr1	1148773	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:60:60
chr1	1148774	.	C	.	.	PASS	END=1148775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	1148776	.	G	.	.	PASS	END=1148779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	1148780	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:69:60
chr1	1148781	.	G	.	.	PASS	END=1148793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:80:60
chr1	1148794	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:59:60
chr1	1148795	.	G	.	.	PASS	END=1148816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:60
chr1	1148817	.	C	.	.	PASS	END=1148841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	1148842	.	A	.	.	PASS	END=1148864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	1148865	.	G	.	.	PASS	END=1148878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	1149041	.	A	.	.	PASS	END=1149062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	1149063	.	G	.	.	PASS	END=1149086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	1149087	.	A	.	.	PASS	END=1149127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	1149128	.	G	.	.	PASS	END=1149167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	1149361	.	A	.	.	PASS	END=1149407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	1149408	.	C	.	.	PASS	END=1149499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr1	1149500	.	A	.	.	PASS	END=1149509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	1152890	.	G	.	.	LowGQX	END=1152924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152925	.	C	.	.	LowGQX	.	GT	./.
chr1	1152926	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152927	.	C	.	.	LowGQX	END=1152928	GT	./.
chr1	1152929	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152930	.	G	.	.	LowGQX	END=1152931	GT	./.
chr1	1152932	.	T	.	.	LowGQX	END=1152935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152936	.	T	.	.	LowGQX	.	GT	./.
chr1	1152937	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152938	.	C	.	.	LowGQX	END=1152939	GT	./.
chr1	1152940	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152941	.	G	.	.	LowGQX	END=1152942	GT	./.
chr1	1152943	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152944	.	A	.	.	LowGQX	.	GT	./.
chr1	1152945	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152946	.	G	.	.	LowGQX	.	GT	./.
chr1	1152947	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152948	.	A	.	.	LowGQX	.	GT	./.
chr1	1152949	.	C	.	.	LowGQX	END=1152950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152951	.	C	.	.	LowGQX	END=1152953	GT	./.
chr1	1152954	.	T	.	.	LowGQX	END=1152959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152960	.	T	.	.	LowGQX	.	GT	./.
chr1	1152961	.	G	.	.	LowGQX	END=1152962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152963	.	G	.	.	LowGQX	END=1152964	GT	./.
chr1	1152965	.	A	.	.	LowGQX	END=1152966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152967	.	C	.	.	LowGQX	.	GT	./.
chr1	1152968	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152969	.	C	.	.	LowGQX	.	GT	./.
chr1	1152970	.	C	.	.	LowGQX	END=1152973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152974	.	G	.	.	LowGQX	.	GT	./.
chr1	1152975	.	G	.	.	LowGQX	END=1152976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152977	.	T	.	.	LowGQX	.	GT	./.
chr1	1152978	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152979	.	C	.	.	LowGQX	END=1152981	GT	./.
chr1	1152982	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152983	.	T	.	.	LowGQX	END=1152985	GT	./.
chr1	1152986	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152987	.	G	.	.	LowGQX	END=1152989	GT	./.
chr1	1152990	.	T	.	.	LowGQX	END=1152992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152993	.	G	.	.	LowGQX	.	GT	./.
chr1	1152994	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152995	.	T	.	.	LowGQX	.	GT	./.
chr1	1152996	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152997	.	C	.	.	LowGQX	.	GT	./.
chr1	1152998	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1152999	.	C	.	.	LowGQX	END=1153000	GT	./.
chr1	1153001	.	T	.	.	LowGQX	END=1153002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153003	.	G	.	.	LowGQX	.	GT	./.
chr1	1153004	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153005	.	C	.	.	LowGQX	END=1153006	GT	./.
chr1	1153007	.	A	.	.	LowGQX	END=1153008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153009	.	G	.	.	LowGQX	.	GT	./.
chr1	1153010	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153011	.	C	.	.	LowGQX	END=1153012	GT	./.
chr1	1153013	.	A	.	.	LowGQX	END=1153019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153020	.	G	.	.	LowGQX	END=1153022	GT	./.
chr1	1153023	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153024	.	G	.	.	LowGQX	.	GT	./.
chr1	1153025	.	G	.	.	LowGQX	END=1153027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153028	.	T	.	.	LowGQX	.	GT	./.
chr1	1153029	.	C	.	.	LowGQX	END=1153030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153031	.	T	.	.	LowGQX	.	GT	./.
chr1	1153032	.	T	.	.	LowGQX	END=1153033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153034	.	A	.	.	LowGQX	END=1153037	GT	./.
chr1	1153038	.	C	.	.	LowGQX	END=1153039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153040	.	T	.	.	LowGQX	END=1153043	GT	./.
chr1	1153044	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153045	.	C	.	.	LowGQX	.	GT	./.
chr1	1153046	.	T	.	.	LowGQX	END=1153048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153049	.	T	.	.	LowGQX	END=1153051	GT	./.
chr1	1153052	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153053	.	T	.	.	LowGQX	END=1153056	GT	./.
chr1	1153057	.	G	.	.	LowGQX	END=1153059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153060	.	C	.	.	LowGQX	.	GT	./.
chr1	1153061	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153062	.	T	.	.	LowGQX	END=1153153	GT	./.
chr1	1153154	.	C	.	.	LowGQX	END=1153155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153156	.	A	.	.	LowGQX	END=1153157	GT	./.
chr1	1153158	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153159	.	G	.	.	LowGQX	END=1153163	GT	./.
chr1	1153164	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153165	.	A	.	.	LowGQX	END=1153169	GT	./.
chr1	1153170	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153171	.	A	.	.	LowGQX	.	GT	./.
chr1	1153172	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153173	.	T	.	.	LowGQX	END=1153175	GT	./.
chr1	1153176	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153177	.	G	.	.	LowGQX	END=1153184	GT	./.
chr1	1153185	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1153186	.	T	.	.	LowGQX	.	GT	./.
chr1	1153836	.	A	.	.	LowGQX	END=1154015	GT	./.
chr1	1154076	.	C	.	.	LowGQX	END=1154445	GT	./.
chr1	1156045	.	A	.	.	LowGQX	END=1156144	GT	./.
chr1	1158550	.	T	.	.	LowGQX	END=1158559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1158560	.	A	.	.	LowGQX	END=1158739	GT	./.
chr1	1159210	.	A	.	.	LowGQX	END=1159350	GT	./.
chr1	1163846	.	A	.	.	LowGQX	END=1164175	GT	./.
chr1	1167646	.	C	.	.	LowGQX	END=1167961	GT	./.
chr1	1167962	.	G	.	.	LowGQX	END=1168005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1168006	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	1168007	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	1168008	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	1168009	.	G	.	.	LowGQX	END=1168025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1168026	.	C	.	.	LowGQX	.	GT	./.
chr1	1168027	.	C	.	.	LowGQX	END=1168050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	1168051	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	1168052	.	C	.	.	LowGQX	END=1168091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	1168092	.	A	.	33.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:60:3
chr1	1168093	.	G	.	.	LowGQX	END=1168106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	1168107	.	A	.	.	LowGQX	END=1168157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1168158	.	T	.	.	LowGQX	END=1168170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	1168171	.	C	.	.	LowGQX	END=1168180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	1168181	.	C	.	.	LowGQX	END=1168195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	1168196	.	C	.	.	PASS	END=1168204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	1168205	.	T	.	.	PASS	END=1168224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	1168225	.	C	.	.	PASS	END=1168236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	1168237	.	G	.	.	PASS	END=1168245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	1168246	.	G	.	.	PASS	END=1168256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	1168257	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:54:60
chr1	1168258	.	G	.	.	PASS	END=1168266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	1168267	.	G	.	.	PASS	END=1168268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	1168269	.	A	.	.	PASS	END=1168270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:63:60
chr1	1168271	.	C	.	.	PASS	END=1168283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	1168284	.	A	.	.	PASS	END=1168294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	1168295	.	G	.	.	PASS	END=1168314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	1168315	.	G	.	.	PASS	END=1168330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	1168331	.	G	.	.	PASS	END=1168372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	1168373	.	C	.	.	PASS	END=1168440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	1168441	.	C	.	.	PASS	END=1168536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	1168537	.	G	.	.	PASS	END=1168589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	1168590	.	T	.	.	PASS	END=1168597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	1168598	.	T	.	.	PASS	END=1168618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	1168619	.	T	.	.	PASS	END=1168639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	1168640	.	A	.	.	PASS	END=1168650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	1177926	.	C	.	.	LowGQX	END=1178028	GT	./.
chr1	1178205	.	C	.	.	LowGQX	END=1178214	GT	./.
chr1	1178215	.	C	.	.	LowGQX	END=1178218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1178219	.	A	.	.	LowGQX	.	GT	./.
chr1	1178220	.	G	.	.	LowGQX	END=1178246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1178247	.	T	.	.	LowGQX	.	GT	./.
chr1	1178248	.	G	.	.	LowGQX	END=1178251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1178252	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	1178253	.	C	.	.	LowGQX	END=1178257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1178258	.	C	.	.	LowGQX	.	GT	./.
chr1	1178259	.	T	.	.	LowGQX	END=1178269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1178270	.	A	.	.	LowGQX	.	GT	./.
chr1	1178271	.	G	.	.	LowGQX	END=1178276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1178277	.	A	.	.	LowGQX	.	GT	./.
chr1	1178278	.	G	.	.	LowGQX	END=1178287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1178288	.	A	.	.	LowGQX	.	GT	./.
chr1	1178289	.	G	.	.	LowGQX	END=1178290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1178291	.	C	.	.	LowGQX	END=1178292	GT	./.
chr1	1178293	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1178294	.	C	.	.	LowGQX	.	GT	./.
chr1	1178295	.	T	.	.	LowGQX	END=1178301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1178302	.	A	.	.	LowGQX	.	GT	./.
chr1	1178303	.	G	.	.	LowGQX	END=1178304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1178438	.	T	.	.	LowGQX	END=1178460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1178461	.	A	.	.	LowGQX	END=1178465	GT	./.
chr1	1178466	.	A	.	.	LowGQX	END=1178532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1178533	.	C	.	.	LowGQX	END=1178537	GT	./.
chr1	1178822	.	A	.	.	LowGQX	END=1178934	GT	./.
chr1	1179311	.	T	.	.	LowGQX	END=1179412	GT	./.
chr1	1179413	.	C	.	.	LowGQX	END=1179414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1179415	.	C	.	.	LowGQX	END=1179416	GT	./.
chr1	1179417	.	C	.	.	LowGQX	END=1179419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1179420	.	G	.	.	LowGQX	.	GT	./.
chr1	1179421	.	C	.	.	LowGQX	END=1179422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1179423	.	G	.	.	LowGQX	.	GT	./.
chr1	1179424	.	C	.	.	LowGQX	END=1179425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1179426	.	G	.	.	LowGQX	.	GT	./.
chr1	1179427	.	G	.	.	LowGQX	END=1179439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1179440	.	G	.	.	LowGQX	.	GT	./.
chr1	1179441	.	G	.	.	LowGQX	END=1179457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1179458	.	A	.	.	LowGQX	END=1179459	GT	./.
chr1	1179460	.	C	.	.	LowGQX	END=1179462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1179463	.	T	.	.	LowGQX	.	GT	./.
chr1	1179464	.	G	.	.	LowGQX	END=1179466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1179467	.	A	.	.	LowGQX	.	GT	./.
chr1	1179468	.	A	.	.	LowGQX	END=1179473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1179474	.	G	.	.	LowGQX	.	GT	./.
chr1	1179475	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1179476	.	T	.	.	LowGQX	.	GT	./.
chr1	1179477	.	C	.	.	LowGQX	END=1179484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1179485	.	T	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	1179486	.	C	.	.	LowGQX	END=1179487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	1179564	.	G	.	.	LowGQX	END=1179639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1179640	.	G	.	.	LowGQX	END=1179663	GT	./.
chr1	1179759	.	A	.	.	LowGQX	END=1179879	GT	./.
chr1	1181881	.	C	.	.	LowGQX	END=1182072	GT	./.
chr1	1190581	.	C	.	.	LowGQX	END=1190587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1190588	.	C	.	.	LowGQX	END=1190624	GT	./.
chr1	1190625	.	A	.	.	LowGQX	END=1190659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1190660	.	T	.	.	LowGQX	.	GT	./.
chr1	1190661	.	C	.	.	LowGQX	END=1190686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1190687	.	G	.	.	LowGQX	.	GT	./.
chr1	1190688	.	G	.	.	LowGQX	END=1190716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1190717	.	G	.	.	LowGQX	.	GT	./.
chr1	1190718	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1190719	.	T	.	.	LowGQX	.	GT	./.
chr1	1190720	.	T	.	.	LowGQX	END=1190727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1190728	.	G	.	.	LowGQX	.	GT	./.
chr1	1190729	.	C	.	.	LowGQX	END=1190735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1190736	.	C	.	.	LowGQX	.	GT	./.
chr1	1190737	.	G	.	.	LowGQX	END=1190740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1190741	.	G	.	.	LowGQX	.	GT	./.
chr1	1190742	.	C	.	.	LowGQX	END=1190744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1190745	.	G	.	.	LowGQX	END=1190746	GT	./.
chr1	1190747	.	T	.	.	LowGQX	END=1190756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1190757	.	A	.	.	LowGQX	.	GT	./.
chr1	1190758	.	A	.	.	LowGQX	END=1190763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1190764	.	T	.	.	LowGQX	.	GT	./.
chr1	1190765	.	T	.	.	LowGQX	END=1190773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1190774	.	G	.	.	LowGQX	.	GT	./.
chr1	1190775	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1190776	.	T	.	.	LowGQX	END=1190869	GT	./.
chr1	1191416	.	C	.	.	LowGQX	END=1191500	GT	./.
chr1	1191501	.	C	.	.	LowGQX	END=1191504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1191505	.	T	.	.	LowGQX	.	GT	./.
chr1	1191506	.	C	.	.	LowGQX	END=1191513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1191514	.	G	.	.	LowGQX	END=1191515	GT	./.
chr1	1192370	.	A	.	.	LowGQX	END=1192512	GT	./.
chr1	1192586	.	A	.	.	LowGQX	END=1192692	GT	./.
chr1	1197643	.	T	.	.	LowGQX	END=1197746	GT	./.
chr1	1197747	.	G	.	.	LowGQX	END=1197770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1198697	.	T	.	.	LowGQX	END=1198796	GT	./.
chr1	1200137	.	A	.	.	LowGQX	END=1200158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1200159	.	A	.	.	LowGQX	END=1200236	GT	./.
chr1	1201441	.	G	.	.	LowGQX	END=1201540	GT	./.
chr1	1203240	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1203241	.	C	.	.	LowGQX	.	GT	./.
chr1	1203242	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1203243	.	A	.	.	LowGQX	.	GT	./.
chr1	1203244	.	C	.	.	LowGQX	END=1203266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1203267	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1203268	.	C	.	.	LowGQX	END=1203273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1203274	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1203275	.	C	.	.	LowGQX	.	GT	./.
chr1	1203276	.	A	.	.	LowGQX	END=1203284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1203285	.	G	.	.	LowGQX	.	GT	./.
chr1	1203286	.	C	.	.	LowGQX	END=1203287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1203288	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1203289	.	C	.	.	LowGQX	END=1203293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1203294	.	C	.	.	LowGQX	.	GT	./.
chr1	1203295	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1203296	.	T	.	.	LowGQX	END=1203306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1203307	.	A	.	.	LowGQX	.	GT	./.
chr1	1203308	.	A	.	.	LowGQX	END=1203316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1203317	.	T	.	.	LowGQX	.	GT	./.
chr1	1203318	.	G	.	.	LowGQX	END=1203330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1203331	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1203332	.	G	.	.	LowGQX	END=1203352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1203353	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1203354	.	T	.	.	LowGQX	END=1203369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1203370	.	C	.	.	LowGQX	.	GT	./.
chr1	1203371	.	A	.	.	LowGQX	END=1203374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1215994	.	G	.	.	LowGQX	END=1216002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1216003	.	G	.	.	LowGQX	END=1216093	GT	./.
chr1	1216592	.	C	.	.	LowGQX	END=1216691	GT	./.
chr1	1216790	.	G	.	.	LowGQX	END=1216941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1216942	.	G	.	.	LowGQX	END=1216995	GT	./.
chr1	1217611	.	G	.	.	LowGQX	END=1217710	GT	./.
chr1	1219297	.	C	.	.	LowGQX	END=1219515	GT	./.
chr1	1220948	.	T	.	.	LowGQX	END=1221047	GT	./.
chr1	1221304	.	A	.	.	LowGQX	END=1221535	GT	./.
chr1	1221536	.	C	.	.	LowGQX	END=1221566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1221567	.	C	.	.	LowGQX	.	GT	./.
chr1	1221568	.	A	.	.	LowGQX	END=1221582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1221583	.	T	.	.	LowGQX	.	GT	./.
chr1	1221584	.	C	.	.	LowGQX	END=1221589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1221590	.	G	.	.	LowGQX	.	GT	./.
chr1	1221591	.	G	.	.	LowGQX	END=1221603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1221604	.	A	.	.	LowGQX	.	GT	./.
chr1	1221605	.	C	.	.	LowGQX	END=1221607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1221608	.	G	.	.	LowGQX	.	GT	./.
chr1	1221609	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1221610	.	A	.	.	LowGQX	.	GT	./.
chr1	1221611	.	G	.	.	LowGQX	END=1221619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1221620	.	G	.	.	LowGQX	.	GT	./.
chr1	1221621	.	C	.	.	LowGQX	END=1221629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1221630	.	G	.	.	LowGQX	.	GT	./.
chr1	1221631	.	T	.	.	LowGQX	END=1221660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222146	.	A	.	.	LowGQX	END=1222207	GT	./.
chr1	1222208	.	C	.	.	LowGQX	END=1222223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222224	.	A	.	.	LowGQX	.	GT	./.
chr1	1222225	.	A	.	.	LowGQX	END=1222231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222232	.	C	.	.	LowGQX	.	GT	./.
chr1	1222233	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222234	.	A	.	.	LowGQX	.	GT	./.
chr1	1222235	.	A	.	.	LowGQX	END=1222240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222241	.	A	.	.	LowGQX	END=1222242	GT	./.
chr1	1222243	.	C	.	.	LowGQX	END=1222244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222245	.	G	.	.	LowGQX	.	GT	./.
chr1	1222246	.	C	.	.	LowGQX	END=1222250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222251	.	T	.	.	LowGQX	END=1222252	GT	./.
chr1	1222253	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222254	.	G	.	.	LowGQX	END=1222255	GT	./.
chr1	1222256	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222257	.	A	.	.	LowGQX	.	GT	./.
chr1	1222258	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222259	.	T	.	.	LowGQX	.	GT	./.
chr1	1222260	.	G	.	.	LowGQX	END=1222265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222266	.	C	.	.	LowGQX	.	GT	./.
chr1	1222267	.	G	.	.	LowGQX	END=1222269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1222270	.	A	.	.	LowGQX	.	GT	./.
chr1	1222271	.	C	.	.	LowGQX	END=1222272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1222273	.	A	.	.	LowGQX	.	GT	./.
chr1	1222274	.	G	.	.	LowGQX	END=1222275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1222276	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1222277	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1222278	.	C	.	.	LowGQX	END=1222279	GT	./.
chr1	1222280	.	C	.	.	LowGQX	END=1222284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222285	.	A	.	.	LowGQX	.	GT	./.
chr1	1222286	.	C	.	.	LowGQX	END=1222290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222291	.	A	.	.	LowGQX	.	GT	./.
chr1	1222292	.	C	.	.	LowGQX	END=1222299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222300	.	T	.	.	LowGQX	.	GT	./.
chr1	1222301	.	C	.	.	LowGQX	END=1222303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222304	.	T	.	.	LowGQX	.	GT	./.
chr1	1222305	.	C	.	.	LowGQX	END=1222314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222315	.	T	.	.	LowGQX	.	GT	./.
chr1	1222316	.	G	.	.	LowGQX	END=1222318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222319	.	C	.	.	LowGQX	.	GT	./.
chr1	1222320	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222321	.	A	.	.	LowGQX	.	GT	./.
chr1	1222322	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222323	.	T	.	.	LowGQX	.	GT	./.
chr1	1222324	.	C	.	.	LowGQX	END=1222341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222342	.	T	.	.	LowGQX	.	GT	./.
chr1	1222343	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222344	.	G	.	.	LowGQX	.	GT	./.
chr1	1222345	.	G	.	.	LowGQX	END=1222347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222348	.	T	.	.	LowGQX	END=1222349	GT	./.
chr1	1222350	.	A	.	.	LowGQX	END=1222351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222352	.	A	.	.	LowGQX	END=1222353	GT	./.
chr1	1222354	.	T	.	.	LowGQX	END=1222356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222357	.	T	.	.	LowGQX	.	GT	./.
chr1	1222487	.	A	.	.	LowGQX	END=1222545	GT	./.
chr1	1222546	.	G	.	.	LowGQX	END=1222681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1222886	.	A	.	.	LowGQX	END=1223218	GT	./.
chr1	1223259	.	C	.	.	LowGQX	END=1223419	GT	./.
chr1	1225649	.	A	.	.	LowGQX	END=1225770	GT	./.
chr1	1225847	.	C	.	.	LowGQX	END=1225946	GT	./.
chr1	1225996	.	A	.	.	LowGQX	END=1226095	GT	./.
chr1	1226255	.	A	.	.	LowGQX	END=1226354	GT	./.
chr1	1226433	.	A	.	.	LowGQX	END=1226532	GT	./.
chr1	1226632	.	A	.	.	LowGQX	END=1226664	GT	./.
chr1	1226665	.	T	.	.	LowGQX	END=1226752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1226753	.	A	.	.	LowGQX	.	GT	./.
chr1	1226754	.	G	.	.	LowGQX	END=1226765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1226766	.	C	.	.	LowGQX	.	GT	./.
chr1	1226767	.	T	.	.	LowGQX	END=1226784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1226785	.	C	.	.	LowGQX	.	GT	./.
chr1	1226786	.	C	.	.	LowGQX	END=1226798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1226799	.	A	.	.	LowGQX	.	GT	./.
chr1	1226800	.	G	.	.	LowGQX	END=1226801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1226802	.	C	.	.	LowGQX	.	GT	./.
chr1	1226803	.	C	.	.	LowGQX	END=1226816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1226817	.	T	.	.	LowGQX	.	GT	./.
chr1	1226818	.	C	.	.	LowGQX	END=1226825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1226826	.	A	.	.	LowGQX	.	GT	./.
chr1	1226827	.	A	.	.	LowGQX	END=1226847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1226848	.	C	.	.	LowGQX	.	GT	./.
chr1	1226849	.	C	.	.	LowGQX	END=1226857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1226858	.	A	.	.	LowGQX	.	GT	./.
chr1	1226859	.	G	.	.	LowGQX	END=1226861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1226862	.	G	.	.	LowGQX	.	GT	./.
chr1	1226863	.	G	.	.	LowGQX	END=1226884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1226885	.	C	.	.	LowGQX	.	GT	./.
chr1	1226886	.	A	.	.	LowGQX	END=1226902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1226903	.	A	.	.	LowGQX	END=1226904	GT	./.
chr1	1226905	.	G	.	.	LowGQX	END=1226914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1226915	.	T	.	.	LowGQX	.	GT	./.
chr1	1226916	.	C	.	.	LowGQX	END=1226922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1226923	.	T	.	.	LowGQX	END=1226924	GT	./.
chr1	1226925	.	C	.	.	LowGQX	END=1226942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1226943	.	G	.	.	LowGQX	.	GT	./.
chr1	1226944	.	A	.	.	LowGQX	END=1226956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1226957	.	T	.	.	LowGQX	END=1226992	GT	./.
chr1	1228911	.	G	.	.	LowGQX	END=1228951	GT	./.
chr1	1228952	.	C	.	.	LowGQX	END=1228972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1228973	.	A	.	.	LowGQX	.	GT	./.
chr1	1228974	.	C	.	.	LowGQX	END=1228984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1228985	.	A	.	.	LowGQX	.	GT	./.
chr1	1228986	.	C	.	.	LowGQX	END=1229090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1229149	.	C	.	.	LowGQX	END=1229315	GT	./.
chr1	1229468	.	A	.	.	LowGQX	END=1229581	GT	./.
chr1	1229750	.	T	.	.	LowGQX	END=1229760	GT	./.
chr1	1229761	.	C	.	.	LowGQX	END=1229900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1229901	.	G	.	.	LowGQX	END=1230010	GT	./.
chr1	1230097	.	C	.	.	LowGQX	END=1230196	GT	./.
chr1	1230825	.	A	.	.	LowGQX	END=1230936	GT	./.
chr1	1231114	.	A	.	.	LowGQX	END=1231320	GT	./.
chr1	1231393	.	A	.	.	LowGQX	END=1231492	GT	./.
chr1	1231576	.	G	.	.	LowGQX	END=1231669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1231670	.	A	.	.	LowGQX	END=1231675	GT	./.
chr1	1231803	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	1231804	.	C	.	.	LowGQX	END=1231815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1231816	.	G	.	.	LowGQX	.	GT	./.
chr1	1231817	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1231818	.	A	.	.	LowGQX	.	GT	./.
chr1	1231819	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1231820	.	C	.	.	LowGQX	END=1231821	GT	./.
chr1	1231822	.	C	.	.	LowGQX	END=1231828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1231829	.	C	.	.	LowGQX	END=1231830	GT	./.
chr1	1231831	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1231832	.	A	.	.	LowGQX	.	GT	./.
chr1	1231833	.	G	.	.	LowGQX	END=1231834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1231835	.	A	.	.	LowGQX	.	GT	./.
chr1	1231836	.	G	.	.	LowGQX	END=1231837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1231838	.	A	.	.	LowGQX	.	GT	./.
chr1	1231839	.	C	.	.	LowGQX	END=1231846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1231847	.	T	.	.	LowGQX	.	GT	./.
chr1	1231848	.	T	.	.	LowGQX	END=1231857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1231858	.	C	.	.	LowGQX	.	GT	./.
chr1	1231859	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1231860	.	A	.	.	LowGQX	.	GT	./.
chr1	1231861	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1231862	.	C	.	.	LowGQX	END=1231863	GT	./.
chr1	1231864	.	G	.	.	LowGQX	END=1231867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1231868	.	T	.	.	LowGQX	.	GT	./.
chr1	1231869	.	C	.	.	LowGQX	END=1231887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1231888	.	G	.	.	LowGQX	END=1231889	GT	./.
chr1	1231890	.	A	.	.	LowGQX	END=1231892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1231893	.	G	.	.	LowGQX	.	GT	./.
chr1	1231894	.	G	.	.	LowGQX	END=1231895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1231896	.	T	.	.	LowGQX	.	GT	./.
chr1	1231897	.	G	.	.	LowGQX	END=1231900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1231901	.	C	.	.	LowGQX	END=1232015	GT	./.
chr1	1233200	.	A	.	.	LowGQX	END=1233208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1233209	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1233210	.	A	.	.	LowGQX	END=1233222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1233223	.	G	.	.	LowGQX	END=1233224	GT	./.
chr1	1233225	.	T	.	.	LowGQX	END=1233226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1233227	.	T	.	.	LowGQX	END=1233228	GT	./.
chr1	1233229	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1233230	.	C	.	.	LowGQX	END=1233231	GT	./.
chr1	1233232	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1233233	.	T	.	.	LowGQX	END=1233234	GT	./.
chr1	1233235	.	G	.	.	LowGQX	END=1233236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1233237	.	C	.	.	LowGQX	.	GT	./.
chr1	1233238	.	G	.	.	LowGQX	END=1233241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1233242	.	G	.	.	LowGQX	.	GT	./.
chr1	1233243	.	C	.	.	LowGQX	END=1233252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1233253	.	C	.	.	LowGQX	.	GT	./.
chr1	1233254	.	T	.	.	LowGQX	END=1233258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1233259	.	A	.	.	LowGQX	.	GT	./.
chr1	1233260	.	G	.	.	LowGQX	END=1233266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1233267	.	C	.	.	LowGQX	.	GT	./.
chr1	1233268	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1233269	.	C	.	.	LowGQX	END=1233315	GT	./.
chr1	1233391	.	A	.	.	LowGQX	END=1233495	GT	./.
chr1	1233666	.	T	.	.	LowGQX	END=1233825	GT	./.
chr1	1233894	.	A	.	.	LowGQX	END=1234104	GT	./.
chr1	1234621	.	A	.	.	LowGQX	END=1234780	GT	./.
chr1	1235055	.	T	.	.	LowGQX	END=1235179	GT	./.
chr1	1235180	.	G	.	.	LowGQX	END=1235241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1235242	.	A	.	.	LowGQX	.	GT	./.
chr1	1235243	.	T	.	.	LowGQX	END=1235246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1235247	.	A	.	.	LowGQX	.	GT	./.
chr1	1235248	.	C	.	.	LowGQX	END=1235256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1235257	.	A	.	.	LowGQX	.	GT	./.
chr1	1235258	.	C	.	.	LowGQX	END=1235263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1235264	.	A	.	.	LowGQX	.	GT	./.
chr1	1235265	.	G	.	.	LowGQX	END=1235281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1235282	.	C	.	.	LowGQX	.	GT	./.
chr1	1235283	.	C	.	.	LowGQX	END=1235284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1235285	.	G	.	.	LowGQX	.	GT	./.
chr1	1235286	.	C	.	.	LowGQX	END=1235287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1235351	.	A	.	.	LowGQX	END=1235431	GT	./.
chr1	1235432	.	T	.	.	LowGQX	END=1235444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1235445	.	G	.	.	LowGQX	.	GT	./.
chr1	1235446	.	C	.	.	LowGQX	END=1235450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1235511	.	G	.	.	LowGQX	END=1235581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1235582	.	T	.	.	LowGQX	END=1235610	GT	./.
chr1	1235876	.	T	.	.	LowGQX	END=1236086	GT	./.
chr1	1237296	.	C	.	.	LowGQX	END=1237306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1237307	.	T	.	.	LowGQX	.	GT	./.
chr1	1237308	.	C	.	.	LowGQX	END=1237311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1237312	.	T	.	.	LowGQX	.	GT	./.
chr1	1237313	.	C	.	.	LowGQX	END=1237334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1237335	.	A	.	.	LowGQX	.	GT	./.
chr1	1237336	.	G	.	.	LowGQX	END=1237337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1237338	.	G	.	.	LowGQX	.	GT	./.
chr1	1237339	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1237340	.	T	.	.	LowGQX	END=1237430	GT	./.
chr1	1237431	.	G	.	.	LowGQX	END=1237447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1238219	.	C	.	.	LowGQX	END=1238378	GT	./.
chr1	1238540	.	A	.	.	LowGQX	END=1238661	GT	./.
chr1	1239445	.	C	.	.	LowGQX	END=1239544	GT	./.
chr1	1242445	.	T	.	.	LowGQX	END=1242523	GT	./.
chr1	1242524	.	C	.	.	LowGQX	END=1242531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1242532	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1242533	.	A	.	.	LowGQX	.	GT	./.
chr1	1242534	.	C	.	.	LowGQX	END=1242544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1242691	.	C	.	.	LowGQX	END=1242692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1242693	.	A	.	.	LowGQX	END=1242695	GT	./.
chr1	1242696	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1242697	.	C	.	.	LowGQX	.	GT	./.
chr1	1242698	.	A	.	.	LowGQX	END=1242699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1242700	.	G	.	.	LowGQX	END=1242701	GT	./.
chr1	1242702	.	T	.	.	LowGQX	END=1242703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1242704	.	C	.	.	LowGQX	.	GT	./.
chr1	1242705	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1242706	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	1242707	.	A	.	.	LowGQX	.	GT	./.
chr1	1242708	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1242709	.	C	.	.	LowGQX	END=1242711	GT	./.
chr1	1242712	.	C	.	.	LowGQX	END=1242713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1242714	.	T	.	.	LowGQX	.	GT	./.
chr1	1242715	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1242716	.	C	.	.	LowGQX	END=1242717	GT	./.
chr1	1242718	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1242719	.	C	.	.	LowGQX	END=1242790	GT	./.
chr1	1243062	.	C	.	.	LowGQX	END=1243221	GT	./.
chr1	1243953	.	A	.	.	LowGQX	END=1244112	GT	./.
chr1	1244214	.	G	.	.	LowGQX	END=1244220	GT	./.
chr1	1244221	.	G	.	.	LowGQX	END=1244227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1244228	.	C	.	.	LowGQX	.	GT	./.
chr1	1244229	.	C	.	.	LowGQX	END=1244253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1244254	.	G	.	.	LowGQX	.	GT	./.
chr1	1244255	.	C	.	.	LowGQX	END=1244262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1244263	.	C	.	.	LowGQX	END=1244264	GT	./.
chr1	1244265	.	C	.	.	LowGQX	END=1244271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1244272	.	C	.	.	LowGQX	.	GT	./.
chr1	1244273	.	C	.	.	LowGQX	END=1244279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1244280	.	C	.	.	LowGQX	.	GT	./.
chr1	1244281	.	G	.	.	LowGQX	END=1244282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1244283	.	T	.	.	LowGQX	.	GT	./.
chr1	1244284	.	T	.	.	LowGQX	END=1244291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1244292	.	C	.	.	LowGQX	END=1244293	GT	./.
chr1	1244294	.	G	.	.	LowGQX	END=1244316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1244317	.	A	.	.	LowGQX	.	GT	./.
chr1	1244318	.	C	.	.	LowGQX	END=1244323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1244324	.	G	.	.	LowGQX	.	GT	./.
chr1	1244325	.	C	.	.	LowGQX	END=1244336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1244337	.	C	.	.	LowGQX	.	GT	./.
chr1	1244338	.	C	.	.	LowGQX	END=1244369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1244370	.	C	.	.	LowGQX	.	GT	./.
chr1	1244371	.	G	.	.	LowGQX	END=1244373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1244453	.	C	.	.	LowGQX	END=1244546	GT	./.
chr1	1244547	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1244548	.	G	.	.	LowGQX	END=1244550	GT	./.
chr1	1244551	.	A	.	.	LowGQX	END=1244552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1244553	.	G	.	.	LowGQX	.	GT	./.
chr1	1244554	.	C	.	.	LowGQX	END=1244556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1244557	.	C	.	.	LowGQX	.	GT	./.
chr1	1244558	.	G	.	.	LowGQX	END=1244565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1244566	.	A	.	.	LowGQX	.	GT	./.
chr1	1244567	.	C	.	.	LowGQX	END=1244596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1244597	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1244598	.	C	.	.	LowGQX	END=1244627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1244628	.	A	.	.	LowGQX	.	GT	./.
chr1	1244629	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1244630	.	A	.	.	LowGQX	.	GT	./.
chr1	1244631	.	C	.	.	LowGQX	END=1244640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1244641	.	A	.	.	LowGQX	.	GT	./.
chr1	1244642	.	C	.	.	LowGQX	END=1244643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1244644	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	1244645	.	G	.	.	LowGQX	END=1244648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1244649	.	A	.	.	LowGQX	.	GT	./.
chr1	1244650	.	T	.	.	LowGQX	END=1244654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1244655	.	T	.	.	LowGQX	.	GT	./.
chr1	1244832	.	A	.	.	LowGQX	END=1244985	GT	./.
chr1	1245059	.	A	.	.	LowGQX	END=1245107	GT	./.
chr1	1245108	.	G	.	.	LowGQX	END=1245233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1245967	.	A	.	.	LowGQX	END=1246149	GT	./.
chr1	1246150	.	G	.	.	LowGQX;LowMQ	END=1246181	GT	./.
chr1	1246182	.	G	.	.	LowGQX	END=1246286	GT	./.
chr1	1246287	.	A	.	.	LowGQX;LowMQ	END=1246317	GT	./.
chr1	1246318	.	C	.	.	LowGQX	END=1246322	GT	./.
chr1	1246323	.	G	.	.	LowGQX	END=1246325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1246326	.	T	.	.	LowGQX	.	GT	./.
chr1	1246327	.	G	.	.	LowGQX	END=1246333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1246334	.	T	.	.	LowGQX	.	GT	./.
chr1	1246335	.	T	.	.	LowGQX	END=1246453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1246708	.	A	.	.	LowGQX	END=1247040	GT	./.
chr1	1247167	.	G	.	.	LowGQX	END=1247321	GT	./.
chr1	1247356	.	G	.	.	LowGQX	END=1247405	GT	./.
chr1	1247406	.	T	.	.	LowGQX	END=1247413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247414	.	A	.	.	LowGQX	.	GT	./.
chr1	1247415	.	C	.	.	LowGQX	END=1247416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247417	.	A	.	.	LowGQX	.	GT	./.
chr1	1247418	.	G	.	.	LowGQX	END=1247419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247420	.	A	.	.	LowGQX	.	GT	./.
chr1	1247421	.	G	.	.	LowGQX	END=1247422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247423	.	A	.	.	LowGQX	.	GT	./.
chr1	1247424	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247425	.	C	.	.	LowGQX	END=1247427	GT	./.
chr1	1247428	.	G	.	.	LowGQX	END=1247429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247430	.	T	.	.	LowGQX	.	GT	./.
chr1	1247431	.	G	.	.	LowGQX	END=1247433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247434	.	T	.	.	LowGQX	.	GT	./.
chr1	1247435	.	G	.	.	LowGQX	END=1247439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247440	.	C	.	.	LowGQX	.	GT	./.
chr1	1247441	.	T	.	.	LowGQX	END=1247445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247446	.	A	.	.	LowGQX	.	GT	./.
chr1	1247447	.	G	.	.	LowGQX	END=1247449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247450	.	G	.	.	LowGQX	.	GT	./.
chr1	1247451	.	C	.	.	LowGQX	END=1247453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247454	.	C	.	.	LowGQX	.	GT	./.
chr1	1247455	.	G	.	.	LowGQX	END=1247462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247463	.	G	.	.	LowGQX	.	GT	./.
chr1	1247464	.	G	.	.	LowGQX	END=1247465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247466	.	G	.	.	LowGQX	END=1247468	GT	./.
chr1	1247469	.	C	.	.	LowGQX	END=1247471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247472	.	A	.	.	LowGQX	.	GT	./.
chr1	1247473	.	C	.	.	LowGQX	END=1247474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247475	.	C	.	.	LowGQX	END=1247476	GT	./.
chr1	1247477	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247478	.	C	.	.	LowGQX	END=1247479	GT	./.
chr1	1247480	.	G	.	.	LowGQX	END=1247483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247484	.	C	.	.	LowGQX	.	GT	./.
chr1	1247485	.	A	.	.	LowGQX	END=1247486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247487	.	A	.	.	LowGQX	.	GT	./.
chr1	1247488	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247489	.	C	.	.	LowGQX	.	GT	./.
chr1	1247490	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247491	.	G	.	.	LowGQX	END=1247493	GT	./.
chr1	1247494	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	1247495	.	G	.	.	LowGQX	.	GT	./.
chr1	1247496	.	G	.	.	LowGQX	END=1247500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247501	.	T	.	.	LowGQX	.	GT	./.
chr1	1247502	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247503	.	C	.	.	LowGQX	.	GT	./.
chr1	1247504	.	T	.	.	LowGQX	END=1247505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247506	.	C	.	.	LowGQX	.	GT	./.
chr1	1247507	.	A	.	.	LowGQX	END=1247508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247509	.	A	.	.	LowGQX	.	GT	./.
chr1	1247510	.	C	.	.	LowGQX	END=1247515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247516	.	T	.	.	LowGQX	END=1247517	GT	./.
chr1	1247518	.	C	.	.	LowGQX	END=1247524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247525	.	A	.	.	LowGQX	.	GT	./.
chr1	1247526	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247527	.	G	.	.	LowGQX	.	GT	./.
chr1	1247528	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247529	.	T	.	.	LowGQX	.	GT	./.
chr1	1247604	.	A	.	.	LowGQX	END=1247626	GT	./.
chr1	1247627	.	C	.	.	LowGQX	END=1247631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247632	.	T	.	.	LowGQX	.	GT	./.
chr1	1247633	.	G	.	.	LowGQX	END=1247634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247635	.	C	.	.	LowGQX	.	GT	./.
chr1	1247636	.	G	.	.	LowGQX	END=1247637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247638	.	C	.	.	LowGQX	.	GT	./.
chr1	1247639	.	T	.	.	LowGQX	END=1247640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247641	.	C	.	.	LowGQX	.	GT	./.
chr1	1247642	.	T	.	.	LowGQX	END=1247705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247706	.	C	.	.	LowGQX	.	GT	./.
chr1	1247707	.	C	.	.	LowGQX	END=1247750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1247801	.	A	.	.	LowGQX	END=1247802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1247803	.	A	.	.	LowGQX	.	GT	./.
chr1	1247804	.	C	.	.	LowGQX	END=1247808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247809	.	C	.	.	LowGQX	.	GT	./.
chr1	1247810	.	T	.	.	LowGQX	END=1247826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247827	.	T	.	.	LowGQX	.	GT	./.
chr1	1247828	.	T	.	.	LowGQX	END=1247851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247852	.	G	.	.	LowGQX	.	GT	./.
chr1	1247853	.	C	.	.	LowGQX	END=1247857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1247858	.	G	.	.	LowGQX	END=1247900	GT	./.
chr1	1247971	.	A	.	.	LowGQX	END=1248082	GT	./.
chr1	1248165	.	A	.	.	LowGQX	END=1248297	GT	./.
chr1	1248298	.	G	.	.	LowGQX	END=1248304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1248305	.	A	.	.	LowGQX	.	GT	./.
chr1	1248306	.	C	.	.	LowGQX	END=1248312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1248313	.	T	.	.	LowGQX	.	GT	./.
chr1	1248314	.	G	.	.	LowGQX	END=1248317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1248318	.	C	.	.	LowGQX	END=1248322	GT	./.
chr1	1248323	.	C	.	.	LowGQX	END=1248327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1248328	.	A	.	.	LowGQX	.	GT	./.
chr1	1248329	.	G	.	.	LowGQX	END=1248330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1248331	.	T	.	.	LowGQX	.	GT	./.
chr1	1248410	.	C	.	.	LowGQX	END=1248412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1248413	.	A	.	.	LowGQX	.	GT	./.
chr1	1248414	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1248415	.	C	.	.	LowGQX	END=1248417	GT	./.
chr1	1248418	.	C	.	.	LowGQX	END=1248422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1248423	.	G	.	.	LowGQX	.	GT	./.
chr1	1248424	.	C	.	.	LowGQX	END=1248426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1248427	.	C	.	.	LowGQX	.	GT	./.
chr1	1248428	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1248429	.	C	.	.	LowGQX	END=1248431	GT	./.
chr1	1248432	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1248433	.	C	.	.	LowGQX	.	GT	./.
chr1	1248434	.	T	.	.	LowGQX	END=1248435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1248436	.	G	.	.	LowGQX	END=1248437	GT	./.
chr1	1248438	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1248439	.	C	.	.	LowGQX	END=1248440	GT	./.
chr1	1248441	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1248442	.	C	.	.	LowGQX	END=1248444	GT	./.
chr1	1248445	.	C	.	.	LowGQX	END=1248447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1248448	.	C	.	.	LowGQX	END=1248509	GT	./.
chr1	1248881	.	G	.	.	LowGQX	END=1248980	GT	./.
chr1	1249110	.	A	.	.	LowGQX	END=1249150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1249151	.	C	.	.	LowGQX	END=1249303	GT	./.
chr1	1249604	.	G	.	.	LowGQX	END=1249763	GT	./.
chr1	1250202	.	A	.	.	LowGQX	END=1250344	GT	./.
chr1	1250752	.	C	.	.	LowGQX	END=1250851	GT	./.
chr1	1250898	.	A	.	.	LowGQX	END=1251000	GT	./.
chr1	1254235	.	T	.	.	LowGQX	END=1254253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254254	.	T	.	.	LowGQX	END=1254295	GT	./.
chr1	1254296	.	C	.	.	LowGQX	END=1254343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254344	.	A	.	.	LowGQX	.	GT	./.
chr1	1254345	.	G	.	.	LowGQX	END=1254364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254365	.	A	.	.	LowGQX	.	GT	./.
chr1	1254366	.	G	.	.	LowGQX	END=1254391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254392	.	A	.	.	LowGQX	.	GT	./.
chr1	1254393	.	C	.	.	LowGQX	END=1254399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254400	.	C	.	.	LowGQX	END=1254401	GT	./.
chr1	1254402	.	T	.	.	LowGQX	END=1254405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254406	.	A	.	.	LowGQX	.	GT	./.
chr1	1254407	.	A	.	.	LowGQX	END=1254413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254414	.	T	.	.	LowGQX	.	GT	./.
chr1	1254415	.	C	.	.	LowGQX	END=1254417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254418	.	A	.	.	LowGQX	.	GT	./.
chr1	1254419	.	C	.	.	LowGQX	END=1254421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254422	.	A	.	.	LowGQX	.	GT	./.
chr1	1254423	.	G	.	.	LowGQX	END=1254426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254427	.	G	.	.	LowGQX	.	GT	./.
chr1	1254428	.	G	.	.	LowGQX	END=1254432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254433	.	T	.	.	LowGQX	.	GT	./.
chr1	1254434	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254435	.	C	.	.	LowGQX	.	GT	./.
chr1	1254436	.	A	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	1254437	.	T	.	.	LowGQX	.	GT	./.
chr1	1254438	.	A	.	.	LowGQX	END=1254442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254443	.	G	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	1254444	.	G	.	.	LowGQX	END=1254446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254447	.	C	.	.	LowGQX	END=1254559	GT	./.
chr1	1254560	.	T	.	.	LowGQX	END=1254564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254565	.	T	.	.	LowGQX	.	GT	./.
chr1	1254566	.	G	.	.	LowGQX	END=1254571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254572	.	A	.	.	LowGQX	.	GT	./.
chr1	1254573	.	C	.	.	LowGQX	END=1254575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254576	.	T	.	.	LowGQX	.	GT	./.
chr1	1254577	.	G	.	.	LowGQX	END=1254578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254579	.	G	.	.	LowGQX	.	GT	./.
chr1	1254580	.	G	.	.	LowGQX	END=1254588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254589	.	T	.	.	LowGQX	.	GT	./.
chr1	1254590	.	T	.	.	LowGQX	END=1254816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1254817	.	G	.	.	LowGQX	END=1254906	GT	./.
chr1	1255823	.	A	.	.	LowGQX	END=1255874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1255875	.	T	.	.	LowGQX	.	GT	./.
chr1	1255876	.	T	.	.	LowGQX	END=1255887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1255888	.	A	.	.	LowGQX	.	GT	./.
chr1	1255889	.	G	.	.	LowGQX	END=1255893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1255894	.	A	.	.	LowGQX	.	GT	./.
chr1	1255895	.	G	.	.	LowGQX	END=1255902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1255903	.	A	.	.	LowGQX	.	GT	./.
chr1	1255904	.	G	.	.	LowGQX	END=1255922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1255992	.	C	.	.	LowGQX	END=1256003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1256004	.	T	.	.	LowGQX	.	GT	./.
chr1	1256005	.	T	.	.	LowGQX	END=1256056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1256057	.	C	.	.	LowGQX	END=1256091	GT	./.
chr1	1256178	.	T	.	.	LowGQX	END=1256360	GT	./.
chr1	1256361	.	G	.	.	LowGQX	END=1256466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1256467	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	1256468	.	C	.	.	LowGQX	END=1256476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	1257276	.	A	.	.	LowGQX	END=1257375	GT	./.
chr1	1258510	.	C	.	.	LowGQX	END=1258667	GT	./.
chr1	1259889	.	A	.	.	LowGQX	END=1260041	GT	./.
chr1	1262289	.	A	.	.	LowGQX	END=1262414	GT	./.
chr1	1262609	.	T	.	.	LowGQX	.	GT	./.
chr1	1262610	.	C	.	.	LowGQX	END=1262766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1262767	.	G	.	.	LowGQX	END=1263121	GT	./.
chr1	1263122	.	C	.	.	LowGQX	END=1263143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1263144	.	G	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	1263145	.	G	.	.	LowGQX	END=1263148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1266713	.	A	.	.	PASS	END=1266798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	1266799	.	T	.	.	PASS	END=1266817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	1266818	.	G	.	.	PASS	END=1266837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	1266838	.	G	.	.	PASS	END=1266846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	1266847	.	T	.	.	PASS	END=1266933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	1267016	.	A	.	.	PASS	END=1267077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:299:99:60
chr1	1267078	.	C	.	.	PASS	END=1267320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:386:99:60
chr1	1267393	.	G	.	.	PASS	END=1267624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	1267625	.	G	.	.	PASS	END=1267736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	1267737	.	T	.	.	PASS	END=1267960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	1267961	.	C	.	.	PASS	END=1268101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	1268102	.	G	.	.	PASS	END=1268188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:258:99:60
chr1	1268299	.	A	.	.	PASS	END=1268318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr1	1268319	.	A	.	.	PASS	END=1268469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:285:99:60
chr1	1268470	.	G	.	.	PASS	END=1268506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:260:99:60
chr1	1268596	.	G	.	.	PASS	END=1268761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	1268884	.	A	.	.	PASS	END=1268987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	1268988	.	C	.	.	PASS	END=1269035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	1269036	.	T	.	.	PASS	END=1269138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	1269139	.	C	.	.	PASS	END=1269170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	1269171	.	G	.	.	PASS	END=1269214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	1269215	.	C	.	.	PASS	END=1269308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	1269309	.	G	.	.	PASS	END=1269463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:256:99:60
chr1	1269464	.	T	.	.	PASS	END=1269540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:321:99:60
chr1	1269541	.	G	.	.	PASS	END=1269553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:419:99:60
chr1	1269554	.	T	C	13015.37	PASS	DP=442;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=21.9896;MQ=60;MQ0=0;QD=29.45;SB=-6771.19	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,440:442:99:13015,993,0:60:99:1.000
chr1	1269555	.	G	.	.	PASS	END=1269639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:365:99:60
chr1	1269640	.	G	.	.	PASS	END=1269670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:280:99:60
chr1	1269671	.	G	.	.	PASS	END=1269685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr1	1269686	.	T	.	.	PASS	END=1269706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	1269707	.	G	.	.	PASS	END=1269741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	1269742	.	G	.	.	PASS	END=1269766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	1269767	.	T	.	.	PASS	END=1269846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	1271509	.	C	.	.	LowGQX	END=1271540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1271541	.	A	.	.	LowGQX	.	GT	./.
chr1	1271542	.	A	.	.	LowGQX	END=1271615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1271616	.	T	.	.	LowGQX	.	GT	./.
chr1	1271617	.	C	.	.	LowGQX	END=1271629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1271630	.	T	.	.	LowGQX	.	GT	./.
chr1	1271631	.	C	.	.	LowGQX	END=1271701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1271702	.	A	.	.	LowGQX	.	GT	./.
chr1	1271703	.	G	.	.	LowGQX	END=1271706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1271707	.	A	.	.	LowGQX	.	GT	./.
chr1	1271708	.	G	.	.	LowGQX	END=1271731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1271732	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1271733	.	C	.	.	LowGQX	END=1271738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	1271739	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1271740	.	G	.	.	LowGQX	END=1271763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1271764	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1271765	.	G	.	.	LowGQX	END=1271774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	1271775	.	A	.	.	LowGQX	.	GT	./.
chr1	1271776	.	C	.	.	LowGQX	END=1271779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	1271780	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	1271781	.	C	.	.	LowGQX	END=1271799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1271800	.	A	.	.	LowGQX	.	GT	./.
chr1	1271801	.	T	.	.	LowGQX	END=1271897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1273112	.	T	.	.	LowGQX	END=1273423	GT	./.
chr1	1273424	.	G	.	.	LowGQX	END=1273476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1273477	.	A	.	.	LowGQX	.	GT	./.
chr1	1273478	.	G	.	.	LowGQX	END=1273496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1273497	.	A	.	.	LowGQX	.	GT	./.
chr1	1273498	.	G	.	.	LowGQX	END=1273512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1273513	.	C	.	.	LowGQX	.	GT	./.
chr1	1273514	.	C	.	.	LowGQX	END=1273528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1273529	.	A	.	.	LowGQX	.	GT	./.
chr1	1273530	.	C	.	.	LowGQX	END=1273537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1273538	.	A	.	.	LowGQX	.	GT	./.
chr1	1273539	.	C	.	.	LowGQX	END=1273541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1273542	.	T	.	.	LowGQX	.	GT	./.
chr1	1273543	.	T	.	.	LowGQX	END=1273544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1273545	.	A	.	.	LowGQX	.	GT	./.
chr1	1273546	.	G	.	.	LowGQX	END=1273547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1273548	.	T	.	.	LowGQX	.	GT	./.
chr1	1273549	.	T	.	.	LowGQX	END=1273554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1273555	.	T	.	.	LowGQX	.	GT	./.
chr1	1273556	.	G	.	.	LowGQX	END=1273559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1273560	.	A	.	.	LowGQX	.	GT	./.
chr1	1273561	.	G	.	.	LowGQX	END=1273563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1273564	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1273565	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1273647	.	A	.	.	LowGQX	END=1273658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1273659	.	A	.	.	LowGQX	END=1273799	GT	./.
chr1	1273800	.	G	.	.	LowGQX	END=1273818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1273900	.	A	.	.	LowGQX	END=1274035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1274655	.	G	.	.	LowGQX	END=1274749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1274750	.	G	.	.	LowGQX	END=1274885	GT	./.
chr1	1274886	.	C	.	.	LowGQX	END=1274898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1274899	.	G	.	.	LowGQX	.	GT	./.
chr1	1274900	.	G	.	.	LowGQX	END=1274931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1274932	.	C	.	.	LowGQX	END=1274933	GT	./.
chr1	1274934	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1274935	.	G	.	25.22	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.91:60:1
chr1	1274936	.	C	.	.	LowGQX	END=1274939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1274940	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1274941	.	T	.	.	LowGQX	END=1274948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1274949	.	G	.	.	LowGQX	END=1274950	GT	./.
chr1	1274951	.	G	.	.	LowGQX	END=1274964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1274965	.	G	.	.	LowGQX	END=1274966	GT	./.
chr1	1274967	.	G	.	.	LowGQX	END=1274970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1274971	.	C	.	.	LowGQX	.	GT	./.
chr1	1274972	.	G	.	.	LowGQX	END=1274981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1274982	.	C	.	.	LowGQX	.	GT	./.
chr1	1274983	.	T	.	.	LowGQX	END=1274997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1274998	.	C	.	.	LowGQX	.	GT	./.
chr1	1274999	.	C	.	.	LowGQX	END=1275017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1275018	.	A	.	.	LowGQX	.	GT	./.
chr1	1275019	.	G	.	.	LowGQX	END=1275021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1275022	.	T	.	.	LowGQX	END=1275064	GT	./.
chr1	1275105	.	C	.	.	LowGQX	END=1275106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1275107	.	A	.	.	LowGQX	.	GT	./.
chr1	1275108	.	G	.	.	LowGQX	END=1275129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1275130	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1275131	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1275132	.	T	.	.	LowGQX	END=1275140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1275141	.	G	T	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	1275142	.	C	.	.	LowGQX	END=1275150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1275151	.	G	T	14.90	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.45;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	1275152	.	G	.	.	LowGQX	END=1275160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1275161	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1275162	.	T	.	.	LowGQX	END=1275174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1275175	.	A	.	.	LowGQX	.	GT	./.
chr1	1275176	.	A	.	.	LowGQX	END=1275204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1275416	.	A	.	.	LowGQX	END=1275432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1275433	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1275434	.	C	.	.	LowGQX	.	GT	./.
chr1	1275435	.	C	.	.	LowGQX	END=1275436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1275437	.	G	.	.	LowGQX	.	GT	./.
chr1	1275438	.	G	.	.	LowGQX	END=1275444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1275445	.	G	.	.	LowGQX	END=1275559	GT	./.
chr1	1275612	.	G	.	.	LowGQX	END=1275711	GT	./.
chr1	1275787	.	T	.	.	LowGQX	END=1275828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1275829	.	T	.	.	LowGQX	.	GT	./.
chr1	1275830	.	T	.	.	LowGQX	END=1275846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1275847	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1275848	.	C	.	.	LowGQX	END=1275886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1277045	.	A	.	.	LowGQX	END=1277187	GT	./.
chr1	1277431	.	A	.	.	LowGQX	END=1277442	GT	./.
chr1	1277443	.	G	.	.	LowGQX	END=1277514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1277515	.	A	.	.	LowGQX	.	GT	./.
chr1	1277516	.	C	.	.	LowGQX	END=1277532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1277533	.	T	C	47.39	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=23.69;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:79,6,0:60:6:1.000
chr1	1277534	.	G	.	.	LowGQX	END=1277538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	1277741	.	A	.	.	LowGQX	END=1277808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1277809	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1277810	.	G	.	.	LowGQX	END=1277812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1277813	.	T	.	.	LowGQX	.	GT	./.
chr1	1277814	.	G	.	.	LowGQX	END=1277866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1278054	.	G	.	.	LowGQX	END=1278057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	1278058	.	C	A	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.358;DP=5;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.358;QD=0.63;ReadPosRankSum=0.358;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,2:5:30.29:30,0,72:60:3:0.400
chr1	1278059	.	A	.	.	LowGQX	END=1278153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	1284254	.	G	.	.	LowGQX	END=1284473	GT	./.
chr1	1288590	.	C	.	.	LowGQX	END=1288602	GT	./.
chr1	1288603	.	G	.	.	LowGQX	END=1288617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288618	.	C	.	.	LowGQX	.	GT	./.
chr1	1288619	.	C	.	.	LowGQX	END=1288626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288627	.	G	.	.	LowGQX	.	GT	./.
chr1	1288628	.	A	.	.	LowGQX	END=1288658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288659	.	G	.	.	LowGQX	END=1288660	GT	./.
chr1	1288661	.	A	.	.	LowGQX	END=1288668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288669	.	C	.	.	LowGQX	.	GT	./.
chr1	1288670	.	C	.	.	LowGQX	END=1288671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288672	.	G	.	.	LowGQX	.	GT	./.
chr1	1288673	.	G	.	.	LowGQX	END=1288674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288675	.	A	.	.	LowGQX	.	GT	./.
chr1	1288676	.	T	.	.	LowGQX	END=1288685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288686	.	C	.	.	LowGQX	.	GT	./.
chr1	1288687	.	C	.	.	LowGQX	END=1288702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288703	.	C	.	.	LowGQX	.	GT	./.
chr1	1288704	.	C	.	.	LowGQX	END=1288709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288710	.	G	.	.	LowGQX	.	GT	./.
chr1	1288711	.	G	.	.	LowGQX	END=1288724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288725	.	T	.	.	LowGQX	.	GT	./.
chr1	1288726	.	G	.	.	LowGQX	END=1288729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288730	.	A	.	.	LowGQX	.	GT	./.
chr1	1288731	.	T	.	.	LowGQX	END=1288732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288733	.	A	.	.	LowGQX	.	GT	./.
chr1	1288734	.	G	.	.	LowGQX	END=1288736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288737	.	G	.	.	LowGQX	END=1288738	GT	./.
chr1	1288739	.	A	.	.	LowGQX	END=1288740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288741	.	T	.	.	LowGQX	.	GT	./.
chr1	1288742	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288743	.	T	.	.	LowGQX	END=1288744	GT	./.
chr1	1288745	.	G	.	.	LowGQX	END=1288746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288947	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288948	.	T	.	.	LowGQX	.	GT	./.
chr1	1288949	.	G	.	.	LowGQX	END=1288950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288951	.	A	.	.	LowGQX	END=1288953	GT	./.
chr1	1288954	.	T	.	.	LowGQX	END=1288960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288961	.	C	.	.	LowGQX	END=1288962	GT	./.
chr1	1288963	.	A	.	.	LowGQX	END=1288968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288969	.	G	.	.	LowGQX	.	GT	./.
chr1	1288970	.	A	.	.	LowGQX	END=1288972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288973	.	C	.	.	LowGQX	.	GT	./.
chr1	1288974	.	C	.	.	LowGQX	END=1288975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288976	.	G	.	.	LowGQX	END=1288977	GT	./.
chr1	1288978	.	G	.	.	LowGQX	END=1288980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288981	.	T	.	.	LowGQX	.	GT	./.
chr1	1288982	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288983	.	C	.	.	LowGQX	END=1288984	GT	./.
chr1	1288985	.	T	.	.	LowGQX	END=1288989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288990	.	G	.	.	LowGQX	.	GT	./.
chr1	1288991	.	C	.	.	LowGQX	END=1288993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1288994	.	T	.	.	LowGQX	.	GT	./.
chr1	1288995	.	T	.	.	LowGQX	END=1288999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289000	.	T	.	.	LowGQX	.	GT	./.
chr1	1289001	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289002	.	C	.	.	LowGQX	.	GT	./.
chr1	1289003	.	C	.	.	LowGQX	END=1289007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289008	.	C	.	.	LowGQX	END=1289009	GT	./.
chr1	1289010	.	C	.	.	LowGQX	END=1289016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289017	.	C	.	.	LowGQX	END=1289018	GT	./.
chr1	1289019	.	A	.	.	LowGQX	END=1289020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289021	.	G	.	.	LowGQX	.	GT	./.
chr1	1289022	.	G	.	.	LowGQX	END=1289023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289024	.	C	.	.	LowGQX	.	GT	./.
chr1	1289025	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289026	.	C	.	.	LowGQX	.	GT	./.
chr1	1289027	.	C	.	.	LowGQX	END=1289028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289029	.	A	.	.	LowGQX	.	GT	./.
chr1	1289030	.	C	.	.	LowGQX	END=1289045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289046	.	C	.	.	LowGQX	.	GT	./.
chr1	1289226	.	A	.	.	LowGQX	END=1289326	GT	./.
chr1	1289399	.	C	.	.	LowGQX	END=1289473	GT	./.
chr1	1289474	.	G	.	.	LowGQX	END=1289498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289543	.	C	.	.	LowGQX	END=1289547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289548	.	G	.	.	LowGQX	.	GT	./.
chr1	1289549	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289550	.	A	.	.	LowGQX	.	GT	./.
chr1	1289551	.	G	.	.	LowGQX	END=1289560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289561	.	G	.	.	LowGQX	.	GT	./.
chr1	1289562	.	G	.	.	LowGQX	END=1289566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289567	.	A	.	.	LowGQX	END=1289568	GT	./.
chr1	1289569	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289570	.	C	.	.	LowGQX	END=1289571	GT	./.
chr1	1289572	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289573	.	C	.	.	LowGQX	.	GT	./.
chr1	1289574	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289575	.	C	.	.	LowGQX	END=1289576	GT	./.
chr1	1289577	.	T	.	.	LowGQX	END=1289579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289580	.	A	.	.	LowGQX	END=1289582	GT	./.
chr1	1289583	.	T	.	.	LowGQX	END=1289585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289586	.	C	.	.	LowGQX	END=1289587	GT	./.
chr1	1289588	.	G	.	.	LowGQX	END=1289589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289590	.	C	.	.	LowGQX	.	GT	./.
chr1	1289591	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289592	.	T	.	.	LowGQX	.	GT	./.
chr1	1289593	.	C	.	.	LowGQX	END=1289599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289600	.	G	.	.	LowGQX	END=1289601	GT	./.
chr1	1289602	.	G	.	.	LowGQX	END=1289604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289605	.	T	.	.	LowGQX	.	GT	./.
chr1	1289606	.	T	.	.	LowGQX	END=1289607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289608	.	G	.	.	LowGQX	.	GT	./.
chr1	1289609	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289610	.	A	.	.	LowGQX	.	GT	./.
chr1	1289611	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289612	.	C	.	.	LowGQX	.	GT	./.
chr1	1289613	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289614	.	T	.	.	LowGQX	.	GT	./.
chr1	1289615	.	G	.	.	LowGQX	END=1289617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289618	.	A	.	.	LowGQX	END=1289619	GT	./.
chr1	1289620	.	G	.	.	LowGQX	END=1289621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289622	.	A	.	.	LowGQX	END=1289642	GT	./.
chr1	1289702	.	T	.	.	LowGQX	END=1289863	GT	./.
chr1	1289864	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289865	.	T	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	1289866	.	T	.	.	LowGQX	END=1289867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289868	.	T	.	.	LowGQX	END=1289870	GT	./.
chr1	1289871	.	C	.	.	LowGQX	END=1289874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289875	.	G	.	.	LowGQX	END=1289876	GT	./.
chr1	1289877	.	G	.	.	LowGQX	END=1289881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289882	.	T	.	.	LowGQX	END=1289884	GT	./.
chr1	1289885	.	G	.	.	LowGQX	END=1289887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289888	.	G	.	.	LowGQX	END=1289889	GT	./.
chr1	1289890	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1289891	.	T	.	.	LowGQX	.	GT	./.
chr1	1290060	.	A	.	.	LowGQX	END=1290534	GT	./.
chr1	1290565	.	C	.	.	LowGQX	END=1290781	GT	./.
chr1	1290817	.	C	.	.	LowGQX	END=1291120	GT	./.
chr1	1291121	.	G	.	.	LowGQX	END=1291134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1291963	.	G	.	.	LowGQX	END=1291968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1291969	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1291970	.	C	.	.	LowGQX	END=1291978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1291979	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	1291980	.	G	.	.	LowGQX	END=1291984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1291985	.	C	.	.	LowGQX	.	GT	./.
chr1	1291986	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	1291987	.	C	A	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:2:3.01:39,3,0:60:3:1.000
chr1	1291988	.	G	.	.	LowGQX	END=1291992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1291993	.	C	.	.	LowGQX	.	GT	./.
chr1	1291994	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	1291995	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1291996	.	G	.	.	LowGQX	END=1292001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1292002	.	G	.	.	LowGQX	.	GT	./.
chr1	1292003	.	C	.	.	LowGQX	END=1292015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1292016	.	G	.	.	LowGQX	.	GT	./.
chr1	1292017	.	C	.	.	LowGQX	END=1292018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1292019	.	G	.	.	LowGQX	END=1292021	GT	./.
chr1	1292022	.	G	.	.	LowGQX	END=1292023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1292024	.	G	.	.	LowGQX	END=1292031	GT	./.
chr1	1292032	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1292033	.	G	.	.	LowGQX	.	GT	./.
chr1	1292034	.	T	.	.	LowGQX	END=1292035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1292036	.	G	.	.	LowGQX	.	GT	./.
chr1	1292037	.	G	.	.	LowGQX	END=1292039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1292040	.	G	.	.	LowGQX	END=1292042	GT	./.
chr1	1292043	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1292044	.	G	.	.	LowGQX	END=1292045	GT	./.
chr1	1292046	.	G	.	.	LowGQX	END=1292051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1292052	.	G	.	.	LowGQX	.	GT	./.
chr1	1292053	.	T	.	.	LowGQX	END=1292054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1292055	.	A	.	.	LowGQX	.	GT	./.
chr1	1292056	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1292057	.	T	.	.	LowGQX	.	GT	./.
chr1	1292058	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1292059	.	A	.	.	LowGQX	.	GT	./.
chr1	1292060	.	C	.	.	LowGQX	END=1292068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1292069	.	A	.	.	LowGQX	.	GT	./.
chr1	1292070	.	G	.	.	LowGQX	END=1292072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1292073	.	G	.	.	LowGQX	END=1292074	GT	./.
chr1	1292075	.	A	.	.	LowGQX	END=1292079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1292080	.	A	.	.	LowGQX	END=1292081	GT	./.
chr1	1292082	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1292083	.	G	.	.	LowGQX	.	GT	./.
chr1	1292084	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1292085	.	C	.	.	LowGQX	END=1292122	GT	./.
chr1	1293811	.	C	.	.	LowGQX	END=1293910	GT	./.
chr1	1296583	.	C	.	.	LowGQX	END=1296590	GT	./.
chr1	1296591	.	C	.	.	LowGQX	END=1296613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1296614	.	A	.	.	LowGQX	.	GT	./.
chr1	1296615	.	C	.	.	LowGQX	END=1296670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1296671	.	C	.	.	LowGQX	.	GT	./.
chr1	1296672	.	G	.	.	LowGQX	END=1296682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1309179	.	A	.	.	LowGQX	END=1309218	GT	./.
chr1	1309219	.	C	.	.	LowGQX	END=1309338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1309378	.	A	.	.	LowGQX	END=1309409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1309410	.	C	.	.	LowGQX	END=1309723	GT	./.
chr1	1309724	.	G	.	.	LowGQX	END=1309726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1309727	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	1309728	.	A	.	.	LowGQX	END=1309827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1310001	.	C	.	.	LowGQX	END=1310160	GT	./.
chr1	1322609	.	C	.	.	LowGQX	END=1322631	GT	./.
chr1	1322632	.	C	.	.	LowGQX	END=1322705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1322706	.	A	.	.	LowGQX	.	GT	./.
chr1	1322707	.	G	.	.	LowGQX	END=1322781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1322782	.	C	.	.	LowGQX	END=1322909	GT	./.
chr1	1322910	.	G	.	.	LowGQX	END=1322964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1323154	.	C	.	.	LowGQX	END=1323253	GT	./.
chr1	1323332	.	A	.	.	LowGQX	END=1323447	GT	./.
chr1	1323831	.	G	.	.	LowGQX	END=1323930	GT	./.
chr1	1324005	.	C	.	.	LowGQX	END=1324123	GT	./.
chr1	1324153	.	A	.	.	LowGQX	END=1324252	GT	./.
chr1	1325608	.	A	.	.	LowGQX	END=1325753	GT	./.
chr1	1325837	.	A	.	.	LowGQX	END=1325945	GT	./.
chr1	1326144	.	A	.	.	LowGQX	END=1326247	GT	./.
chr1	1326889	.	A	.	.	LowGQX	END=1326988	GT	./.
chr1	1328123	.	C	.	.	LowGQX	END=1328222	GT	./.
chr1	1328759	.	A	.	.	LowGQX	END=1328858	GT	./.
chr1	1330772	.	A	.	.	LowGQX	END=1330867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1330868	.	T	.	.	LowGQX	END=1330896	GT	./.
chr1	1333611	.	A	.	.	LowGQX	END=1333684	GT	./.
chr1	1333685	.	A	.	.	LowGQX	END=1333724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1333965	.	A	.	.	LowGQX	END=1333966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1333967	.	G	.	.	LowGQX	END=1334064	GT	./.
chr1	1334368	.	C	.	.	LowGQX	END=1334688	GT	./.
chr1	1334892	.	G	.	.	LowGQX	END=1334912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1334913	.	T	.	.	LowGQX	.	GT	./.
chr1	1334914	.	G	.	.	LowGQX	END=1334924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1334925	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	1334926	.	G	.	.	LowGQX	END=1334947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1334948	.	G	.	.	LowGQX	END=1335069	GT	./.
chr1	1335538	.	G	.	.	LowGQX	END=1335683	GT	./.
chr1	1335985	.	G	.	.	LowGQX	END=1336114	GT	./.
chr1	1337461	.	C	.	.	LowGQX	END=1337638	GT	./.
chr1	1340997	.	T	.	.	LowGQX	END=1341211	GT	./.
chr1	1341212	.	C	.	.	LowGQX	END=1341225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1341226	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	1341227	.	C	.	.	LowGQX	END=1341268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1342287	.	A	.	.	LowGQX	END=1342401	GT	./.
chr1	1342505	.	A	.	.	LowGQX	END=1342592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1342593	.	A	.	.	LowGQX	END=1342604	GT	./.
chr1	1354479	.	C	.	.	LowGQX	END=1354929	GT	./.
chr1	1355420	.	G	.	.	LowGQX	END=1355979	GT	./.
chr1	1356176	.	C	.	.	LowGQX	END=1356313	GT	./.
chr1	1356314	.	G	.	.	LowGQX	END=1356317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1356318	.	A	.	.	LowGQX	.	GT	./.
chr1	1356319	.	G	.	.	LowGQX	END=1356380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1356381	.	T	.	.	LowGQX	.	GT	./.
chr1	1356382	.	C	.	.	LowGQX	END=1356385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1361482	.	G	.	.	LowGQX	END=1361765	GT	./.
chr1	1362862	.	C	.	.	LowGQX	END=1362869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:33
chr1	1362870	.	T	.	.	LowGQX	END=1363214	GT	./.
chr1	1363215	.	A	.	.	LowGQX	END=1363231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1371056	.	G	.	.	LowGQX	END=1371215	GT	./.
chr1	1372305	.	A	.	.	LowGQX	END=1372578	GT	./.
chr1	1372579	.	G	.	.	LowGQX	END=1372724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1372725	.	C	.	.	LowGQX	END=1372866	GT	./.
chr1	1374459	.	A	.	.	LowGQX	END=1375172	GT	./.
chr1	1386051	.	G	.	.	LowGQX	END=1386150	GT	./.
chr1	1387414	.	G	.	.	LowGQX	END=1387513	GT	./.
chr1	1387730	.	C	.	.	LowGQX	END=1387829	GT	./.
chr1	1389724	.	G	.	.	LowGQX	END=1389826	GT	./.
chr1	1389827	.	G	.	.	LowGQX	END=1389880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1390820	.	T	.	.	LowGQX	END=1390919	GT	./.
chr1	1391170	.	G	.	.	LowGQX	.	GT	./.
chr1	1391171	.	C	.	.	LowGQX	END=1391172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391173	.	C	.	.	LowGQX	END=1391174	GT	./.
chr1	1391175	.	G	.	.	LowGQX	END=1391177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391178	.	T	.	.	LowGQX	.	GT	./.
chr1	1391179	.	G	.	.	LowGQX	END=1391188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391189	.	G	.	.	LowGQX	.	GT	./.
chr1	1391190	.	T	.	.	LowGQX	END=1391191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391192	.	C	.	.	LowGQX	.	GT	./.
chr1	1391193	.	G	.	.	LowGQX	END=1391197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391198	.	A	.	.	LowGQX	.	GT	./.
chr1	1391199	.	T	.	.	LowGQX	END=1391204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391205	.	T	.	.	LowGQX	.	GT	./.
chr1	1391206	.	A	.	.	LowGQX	END=1391212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391213	.	A	.	.	LowGQX	.	GT	./.
chr1	1391214	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391215	.	G	.	.	LowGQX	.	GT	./.
chr1	1391216	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391217	.	A	.	.	LowGQX	.	GT	./.
chr1	1391218	.	C	.	.	LowGQX	END=1391229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391230	.	C	.	.	LowGQX	.	GT	./.
chr1	1391231	.	C	.	.	LowGQX	END=1391234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391235	.	G	.	.	LowGQX	.	GT	./.
chr1	1391236	.	C	.	.	LowGQX	END=1391248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391249	.	A	.	.	LowGQX	.	GT	./.
chr1	1391250	.	T	.	.	LowGQX	END=1391252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391253	.	T	.	.	LowGQX	END=1391254	GT	./.
chr1	1391255	.	C	.	.	LowGQX	END=1391258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391259	.	A	.	.	LowGQX	.	GT	./.
chr1	1391260	.	C	.	.	LowGQX	END=1391265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391266	.	A	.	.	LowGQX	.	GT	./.
chr1	1391267	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391268	.	C	.	.	LowGQX	.	GT	./.
chr1	1391269	.	A	.	.	LowGQX	END=1391271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391272	.	C	.	.	LowGQX	END=1391273	GT	./.
chr1	1391274	.	C	.	.	LowGQX	END=1391276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391277	.	G	.	.	LowGQX	END=1391278	GT	./.
chr1	1391279	.	A	.	.	LowGQX	END=1391281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391282	.	A	.	.	LowGQX	.	GT	./.
chr1	1391283	.	C	.	.	LowGQX	END=1391284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391285	.	C	.	.	LowGQX	.	GT	./.
chr1	1391286	.	T	.	.	LowGQX	END=1391287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391288	.	T	.	.	LowGQX	.	GT	./.
chr1	1391289	.	T	.	.	LowGQX	END=1391290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391291	.	G	.	.	LowGQX	.	GT	./.
chr1	1391292	.	C	.	.	LowGQX	END=1391296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1391563	.	G	.	.	LowGQX	END=1391661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:49
chr1	1391662	.	C	.	.	LowGQX;LowMQ	END=1391729	GT	./.
chr1	1392485	.	G	.	.	LowGQX	END=1392584	GT	./.
chr1	1394526	.	A	.	.	LowGQX	END=1394625	GT	./.
chr1	1396129	.	G	.	.	LowGQX	END=1396139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1396140	.	A	.	.	LowGQX	.	GT	./.
chr1	1396141	.	T	.	.	LowGQX	END=1396260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1396261	.	A	.	.	LowGQX	.	GT	./.
chr1	1396262	.	C	.	.	LowGQX	END=1396279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1396280	.	G	.	.	LowGQX	.	GT	./.
chr1	1396281	.	G	.	.	LowGQX	END=1396297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1397979	.	G	.	.	LowGQX	END=1398006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1398007	.	C	.	.	LowGQX	END=1398017	GT	./.
chr1	1398018	.	G	.	.	LowGQX	END=1398088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1403763	.	G	.	.	LowGQX	END=1403806	GT	./.
chr1	1403807	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1403808	.	G	.	.	LowGQX	.	GT	./.
chr1	1403809	.	A	.	.	LowGQX	END=1403887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1403888	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	1403889	.	G	.	.	LowGQX	END=1403915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1403916	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	1403917	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1403918	.	G	.	.	LowGQX	.	GT	./.
chr1	1403919	.	G	.	.	LowGQX	END=1403926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1403927	.	C	.	.	LowGQX	.	GT	./.
chr1	1403928	.	A	.	.	LowGQX	END=1403956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1403957	.	C	.	.	LowGQX	.	GT	./.
chr1	1403958	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1403959	.	A	.	.	LowGQX	.	GT	./.
chr1	1403960	.	C	.	.	LowGQX	END=1403968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1403969	.	T	.	.	LowGQX	END=1404102	GT	./.
chr1	1407192	.	G	.	.	LowGQX	END=1407531	GT	./.
chr1	1412643	.	T	.	.	LowGQX	END=1412742	GT	./.
chr1	1413880	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	1413881	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	1413882	.	G	.	.	LowGQX	END=1413883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	1413884	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1413885	.	G	.	.	LowGQX	END=1413886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	1413887	.	T	.	.	LowGQX	.	GT	./.
chr1	1413888	.	G	.	.	LowGQX	END=1413890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	1413891	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1413892	.	G	.	.	LowGQX	END=1413895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	1413896	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	1413897	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	1413898	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	1413899	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1413900	.	C	.	.	LowGQX	END=1413916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	1413917	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	1413918	.	C	.	.	LowGQX	END=1413929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	1413930	.	T	.	.	LowGQX	END=1413955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1413956	.	C	.	.	LowGQX	END=1413969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:51
chr1	1413970	.	T	.	33	LowGQX	DP=2;MQ=51;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:51:3
chr1	1413971	.	C	.	.	LowGQX	END=1413986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	1413987	.	T	.	.	LowGQX	.	GT	./.
chr1	1413988	.	G	.	.	LowGQX	END=1413992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	1413993	.	A	.	.	LowGQX	.	GT	./.
chr1	1413994	.	G	.	.	LowGQX	END=1413997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	1413998	.	C	.	.	LowGQX	.	GT	./.
chr1	1413999	.	A	.	.	LowGQX	END=1414008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	1414009	.	T	.	.	LowGQX	.	GT	./.
chr1	1414010	.	G	.	.	LowGQX	END=1414016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	1414017	.	T	.	.	LowGQX	.	GT	./.
chr1	1414018	.	C	.	.	LowGQX	END=1414024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	1414025	.	A	.	.	LowGQX	.	GT	./.
chr1	1414026	.	G	.	.	LowGQX	END=1414106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	1414107	.	G	.	.	LowGQX	END=1414127	GT	./.
chr1	1414409	.	G	.	.	LowGQX	END=1414508	GT	./.
chr1	1416232	.	G	.	.	LowGQX	END=1416331	GT	./.
chr1	1417516	.	A	.	.	LowGQX	END=1417685	GT	./.
chr1	1417923	.	A	.	.	LowGQX	END=1418099	GT	./.
chr1	1418347	.	C	.	.	LowGQX	END=1418506	GT	./.
chr1	1420394	.	A	.	.	LowGQX	END=1420553	GT	./.
chr1	1421142	.	T	.	.	LowGQX	END=1421241	GT	./.
chr1	1421488	.	A	.	.	LowGQX	END=1421617	GT	./.
chr1	1421922	.	A	.	.	LowGQX	END=1422050	GT	./.
chr1	1423219	.	G	.	.	LowGQX	END=1423318	GT	./.
chr1	1424567	.	G	.	.	LowGQX	END=1424568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1424569	.	A	.	.	LowGQX	.	GT	./.
chr1	1424570	.	C	.	.	LowGQX	END=1424580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1424581	.	C	.	.	LowGQX	.	GT	./.
chr1	1424582	.	A	.	.	LowGQX	END=1424590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1424591	.	T	.	.	LowGQX	.	GT	./.
chr1	1424592	.	A	.	.	LowGQX	END=1424606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1424607	.	A	.	.	LowGQX	.	GT	./.
chr1	1424608	.	G	.	.	LowGQX	END=1424609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1424610	.	C	.	.	LowGQX	.	GT	./.
chr1	1424611	.	A	.	.	LowGQX	END=1424612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1424613	.	A	.	.	LowGQX	.	GT	./.
chr1	1424614	.	C	.	.	LowGQX	END=1424616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1424617	.	A	.	.	LowGQX	.	GT	./.
chr1	1424618	.	A	.	.	LowGQX	END=1424620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1424621	.	C	.	.	LowGQX	END=1424622	GT	./.
chr1	1424623	.	T	.	.	LowGQX	END=1424629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1424630	.	A	.	.	LowGQX	.	GT	./.
chr1	1424631	.	C	.	.	LowGQX	END=1424634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1424635	.	A	.	.	LowGQX	END=1424666	GT	./.
chr1	1425633	.	A	.	.	LowGQX	END=1425806	GT	./.
chr1	1425849	.	G	.	.	LowGQX	END=1426053	GT	./.
chr1	1430863	.	A	.	.	LowGQX	END=1431118	GT	./.
chr1	1431119	.	G	.	.	LowGQX	END=1431180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1431181	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	1431182	.	G	.	.	LowGQX	END=1431183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1431184	.	A	.	.	LowGQX	END=1431199	GT	./.
chr1	1444585	.	G	.	.	LowGQX	END=1444689	GT	./.
chr1	1447576	.	G	.	.	LowGQX	END=1448070	GT	./.
chr1	1451381	.	T	.	.	LowGQX	END=1451480	GT	./.
chr1	1452545	.	A	.	.	LowGQX	END=1452788	GT	./.
chr1	1452789	.	G	.	.	LowGQX;LowMQ	END=1452794	GT	./.
chr1	1452995	.	T	.	.	LowGQX	END=1453161	GT	./.
chr1	1454286	.	G	.	.	LowGQX	END=1454329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1454330	.	G	.	.	LowGQX	.	GT	./.
chr1	1454331	.	C	.	.	LowGQX	END=1454334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1454335	.	A	.	.	LowGQX	.	GT	./.
chr1	1454336	.	G	.	.	LowGQX	END=1454341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1454342	.	C	.	.	LowGQX	.	GT	./.
chr1	1454343	.	G	.	.	LowGQX	END=1454345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1454346	.	C	.	.	LowGQX	END=1454385	GT	./.
chr1	1455519	.	A	.	.	LowGQX	END=1455688	GT	./.
chr1	1455913	.	C	.	.	LowGQX	END=1456012	GT	./.
chr1	1458122	.	A	.	.	LowGQX	END=1458281	GT	./.
chr1	1458870	.	C	.	.	LowGQX	END=1458969	GT	./.
chr1	1459217	.	A	.	.	LowGQX	END=1459386	GT	./.
chr1	1459651	.	A	.	.	LowGQX	END=1459779	GT	./.
chr1	1460596	.	G	.	.	LowGQX	END=1460601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1460602	.	C	.	.	LowGQX	.	GT	./.
chr1	1460603	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1460604	.	T	.	.	LowGQX	.	GT	./.
chr1	1460605	.	C	.	.	LowGQX	END=1460622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1460623	.	C	.	.	LowGQX	END=1460695	GT	./.
chr1	1461827	.	C	.	.	LowGQX	END=1461920	GT	./.
chr1	1461921	.	C	.	.	LowGQX	END=1461923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1461924	.	C	.	.	LowGQX	END=1461926	GT	./.
chr1	1462469	.	C	.	.	LowGQX	END=1462481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1462482	.	C	.	.	LowGQX	END=1462576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	1462577	.	T	.	.	LowGQX	END=1462629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1463073	.	A	.	.	LowGQX	END=1463085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1463086	.	T	.	.	LowGQX	.	GT	./.
chr1	1463087	.	C	.	.	LowGQX	END=1463128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1463129	.	T	.	.	LowGQX	END=1463244	GT	./.
chr1	1464601	.	A	.	.	LowGQX	END=1464713	GT	./.
chr1	1469304	.	A	.	.	LowGQX	END=1469454	GT	./.
chr1	1470738	.	C	.	.	LowGQX	END=1470754	GT	./.
chr1	1470755	.	C	.	.	LowGQX	END=1470772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1470773	.	T	.	.	LowGQX	.	GT	./.
chr1	1470774	.	A	.	.	LowGQX	END=1470777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1470778	.	T	.	.	LowGQX	END=1470780	GT	./.
chr1	1470781	.	C	.	.	LowGQX	END=1470799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1470800	.	T	.	.	LowGQX	END=1470801	GT	./.
chr1	1470802	.	C	.	.	LowGQX	END=1470818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1470819	.	A	.	.	LowGQX	.	GT	./.
chr1	1470820	.	G	.	.	LowGQX	END=1470826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1470827	.	T	.	.	LowGQX	.	GT	./.
chr1	1470828	.	G	.	.	LowGQX	END=1470887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1470968	.	C	.	.	LowGQX	END=1471177	GT	./.
chr1	1475007	.	G	.	.	LowGQX	END=1475013	GT	./.
chr1	1475014	.	C	.	.	LowGQX	END=1475109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1475110	.	G	.	.	LowGQX	.	GT	./.
chr1	1475111	.	G	.	.	LowGQX	END=1475170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1475588	.	G	.	.	LowGQX	END=1475747	GT	./.
chr1	1477444	.	G	.	.	LowGQX	END=1477549	GT	./.
chr1	1479195	.	T	.	.	LowGQX	.	GT	./.
chr1	1479196	.	C	.	.	LowGQX	END=1479232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1479233	.	C	.	.	LowGQX	END=1479291	GT	./.
chr1	1479292	.	T	.	.	LowGQX	END=1479332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1479333	.	A	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	1479334	.	G	.	.	LowGQX	END=1479369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1480117	.	C	.	.	LowGQX	END=1480127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1480128	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1480129	.	C	.	.	LowGQX	END=1480150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1480151	.	C	.	.	LowGQX	.	GT	./.
chr1	1480152	.	G	.	.	LowGQX	END=1480157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1480158	.	T	.	.	LowGQX	.	GT	./.
chr1	1480159	.	A	.	.	LowGQX	END=1480163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1480164	.	T	.	.	LowGQX	.	GT	./.
chr1	1480165	.	C	.	.	LowGQX	END=1480175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1480176	.	C	.	.	LowGQX	.	GT	./.
chr1	1480177	.	C	.	.	LowGQX	END=1480192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1480193	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	1480194	.	C	.	.	LowGQX	END=1480202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1480203	.	A	.	.	LowGQX	.	GT	./.
chr1	1480204	.	G	.	.	LowGQX	END=1480211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1480212	.	A	.	.	LowGQX	END=1480320	GT	./.
chr1	1480321	.	C	.	.	LowGQX	END=1480324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1480325	.	C	.	.	LowGQX	.	GT	./.
chr1	1480326	.	C	.	.	LowGQX	END=1480328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1480329	.	G	.	.	LowGQX	.	GT	./.
chr1	1480330	.	G	.	.	LowGQX	END=1480384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1499914	.	G	.	.	LowGQX	END=1500179	GT	./.
chr1	1500180	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1500181	.	T	.	.	LowGQX	.	GT	./.
chr1	1500182	.	G	.	.	LowGQX	END=1500188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1500189	.	T	.	.	LowGQX	.	GT	./.
chr1	1500190	.	G	.	.	LowGQX	END=1500193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1500194	.	A	.	.	LowGQX	.	GT	./.
chr1	1500195	.	T	.	.	LowGQX	END=1500206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1500207	.	A	.	.	LowGQX	.	GT	./.
chr1	1500208	.	A	.	.	LowGQX	END=1500298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1509788	.	G	.	.	LowGQX	END=1509947	GT	./.
chr1	1510356	.	A	.	.	LowGQX	END=1510659	GT	./.
chr1	1534714	.	T	.	.	LowGQX	END=1534721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1534722	.	T	.	.	LowGQX	END=1535395	GT	./.
chr1	1550819	.	C	.	.	LowGQX	END=1551038	GT	./.
chr1	1551886	.	A	.	.	LowGQX	END=1551926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1551927	.	T	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	1551928	.	T	.	.	LowGQX	END=1552000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1552001	.	T	.	.	LowGQX	.	GT	./.
chr1	1552002	.	C	.	.	LowGQX	END=1552045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1558756	.	C	.	.	LowGQX	END=1558810	GT	./.
chr1	1558811	.	G	.	.	LowGQX	END=1558893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1558894	.	G	.	.	LowGQX	.	GT	./.
chr1	1558895	.	G	.	.	LowGQX	END=1558980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1558981	.	G	.	.	LowGQX	END=1559081	GT	./.
chr1	1559152	.	A	.	.	LowGQX	END=1559327	GT	./.
chr1	1560119	.	G	.	.	LowGQX	END=1560234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1560235	.	A	.	.	LowGQX	END=1560283	GT	./.
chr1	1560369	.	A	.	.	LowGQX	END=1560567	GT	./.
chr1	1560664	.	A	.	.	LowGQX	END=1560698	GT	./.
chr1	1560699	.	C	.	.	LowGQX	END=1560741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1560742	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	1560743	.	C	.	.	LowGQX	END=1560810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1560924	.	A	.	.	LowGQX	END=1561035	GT	./.
chr1	1561973	.	G	.	.	LowGQX	END=1562136	GT	./.
chr1	1562215	.	A	.	.	LowGQX	END=1562268	GT	./.
chr1	1562269	.	G	.	.	LowGQX	END=1562423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1562424	.	G	.	.	LowGQX	.	GT	./.
chr1	1562425	.	G	.	.	LowGQX	END=1562432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1562452	.	A	.	.	LowGQX	END=1562453	GT	./.
chr1	1562454	.	G	.	.	LowGQX	END=1562461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1562462	.	A	.	.	LowGQX	.	GT	./.
chr1	1562463	.	G	.	.	LowGQX	END=1562466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1562467	.	G	.	.	LowGQX	.	GT	./.
chr1	1562468	.	G	.	.	LowGQX	END=1562469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1562470	.	C	.	.	LowGQX	.	GT	./.
chr1	1562471	.	C	.	.	LowGQX	END=1562472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1562473	.	G	.	.	LowGQX	.	GT	./.
chr1	1562474	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1562475	.	A	.	.	LowGQX	.	GT	./.
chr1	1562476	.	C	.	.	LowGQX	END=1562522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1562523	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1562524	.	G	.	.	LowGQX	END=1562525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1562526	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1562527	.	G	.	.	LowGQX	END=1562537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1562538	.	T	.	.	LowGQX	.	GT	./.
chr1	1562539	.	G	.	.	LowGQX	END=1562561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1562562	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1562563	.	C	.	.	LowGQX	.	GT	./.
chr1	1562564	.	C	.	.	LowGQX	END=1562584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1562585	.	C	.	.	LowGQX	.	GT	./.
chr1	1562586	.	A	.	.	LowGQX	END=1562589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1562644	.	G	.	.	LowGQX	END=1562774	GT	./.
chr1	1562775	.	G	.	.	LowGQX	END=1562826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1563030	.	T	.	.	LowGQX	END=1563085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1563086	.	T	.	.	LowGQX	END=1563240	GT	./.
chr1	1563397	.	A	.	.	LowGQX	END=1563561	GT	./.
chr1	1563651	.	A	.	.	LowGQX	END=1563711	GT	./.
chr1	1563712	.	G	.	.	LowGQX	END=1563781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1563867	.	A	.	.	LowGQX	END=1563875	GT	./.
chr1	1563876	.	G	.	.	LowGQX	END=1563881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1563882	.	T	.	.	LowGQX	.	GT	./.
chr1	1563883	.	G	.	.	LowGQX	END=1563884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1563885	.	A	.	.	LowGQX	.	GT	./.
chr1	1563886	.	C	.	.	LowGQX	END=1563887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1563888	.	T	.	.	LowGQX	.	GT	./.
chr1	1563889	.	G	.	.	LowGQX	END=1563893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1563894	.	A	.	.	LowGQX	.	GT	./.
chr1	1563895	.	C	.	.	LowGQX	END=1563902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1563903	.	T	.	.	LowGQX	.	GT	./.
chr1	1563904	.	G	.	.	LowGQX	END=1563907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1563908	.	T	.	.	LowGQX	.	GT	./.
chr1	1563909	.	C	.	.	LowGQX	END=1563926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1563927	.	T	.	.	LowGQX	.	GT	./.
chr1	1563928	.	G	.	.	LowGQX	END=1563941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1563942	.	T	.	.	LowGQX	.	GT	./.
chr1	1563943	.	G	.	.	LowGQX	END=1563950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1563951	.	T	.	.	LowGQX	.	GT	./.
chr1	1563952	.	G	.	.	LowGQX	END=1563962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1563963	.	T	.	.	LowGQX	.	GT	./.
chr1	1563964	.	G	.	.	LowGQX	END=1563980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1563981	.	T	.	.	LowGQX	.	GT	./.
chr1	1563982	.	C	.	.	LowGQX	END=1564025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1564026	.	T	.	.	LowGQX	END=1564104	GT	./.
chr1	1564485	.	C	.	.	LowGQX	END=1564488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1564489	.	A	.	.	LowGQX	.	GT	./.
chr1	1564490	.	C	.	.	LowGQX	END=1564510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1564511	.	A	.	.	LowGQX	.	GT	./.
chr1	1564512	.	G	.	.	LowGQX	END=1564545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1564546	.	C	.	.	LowGQX	END=1564547	GT	./.
chr1	1564548	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1564549	.	A	.	.	LowGQX	.	GT	./.
chr1	1564550	.	C	.	.	LowGQX	END=1564609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1564610	.	A	.	.	LowGQX	.	GT	./.
chr1	1564611	.	C	.	.	LowGQX	END=1564635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1564636	.	C	.	.	LowGQX	END=1564693	GT	./.
chr1	1564743	.	A	.	.	LowGQX	END=1565101	GT	./.
chr1	1565670	.	A	.	.	LowGQX	END=1565912	GT	./.
chr1	1567575	.	C	.	.	LowGQX	END=1567755	GT	./.
chr1	1568018	.	A	.	.	LowGQX;LowMQ	END=1568054	GT	./.
chr1	1568055	.	A	.	.	LowGQX	END=1568106	GT	./.
chr1	1568107	.	T	.	.	LowGQX;LowMQ	END=1568257	GT	./.
chr1	1568258	.	A	.	.	LowGQX	END=1568760	GT	./.
chr1	1568761	.	G	.	.	LowGQX;LowMQ	END=1568859	GT	./.
chr1	1569114	.	C	.	.	LowGQX	END=1569480	GT	./.
chr1	1569579	.	A	.	.	LowGQX	END=1569747	GT	./.
chr1	1569814	.	C	.	.	LowGQX	END=1570003	GT	./.
chr1	1571122	.	A	.	.	LowGQX;LowMQ	END=1571258	GT	./.
chr1	1571259	.	G	.	.	LowGQX;LowMQ	END=1571263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:3:4
chr1	1571264	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1571265	.	C	.	.	LowGQX;LowMQ	END=1571273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:3:4
chr1	1571287	.	C	.	.	LowGQX;LowMQ	END=1571320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:3:4
chr1	1571321	.	C	.	.	LowGQX;LowMQ	END=1571358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:6:6
chr1	1571359	.	C	.	.	LowGQX;LowMQ	END=1571381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:9:7
chr1	1571382	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:139:6:7
chr1	1571383	.	C	.	.	LowGQX;LowMQ	END=1571389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:9:7
chr1	1571390	.	A	.	.	LowGQX;LowMQ	END=1571391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:6:7
chr1	1571392	.	C	.	.	LowGQX;LowMQ	END=1571403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:9:7
chr1	1571404	.	G	.	.	LowGQX;LowMQ	END=1571409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:12:8
chr1	1571410	.	G	.	.	LowGQX;LowMQ	END=1571440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:9:7
chr1	1571441	.	A	.	.	LowGQX;LowMQ	END=1571447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:6:6
chr1	1571448	.	C	.	.	LowGQX;LowMQ	END=1571452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:9:7
chr1	1571453	.	G	.	.	LowGQX;LowMQ	END=1571459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:12:8
chr1	1571460	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:121:9:8
chr1	1571461	.	C	.	.	LowGQX;LowMQ	END=1571467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:12:8
chr1	1571468	.	C	.	.	LowGQX;LowMQ	END=1571469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:9:8
chr1	1571470	.	G	.	.	LowGQX;LowMQ	END=1571472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:12:8
chr1	1571473	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:105:6:8
chr1	1571474	.	A	.	.	LowGQX;LowMQ	END=1571483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:9:8
chr1	1571484	.	G	.	.	LowGQX;LowMQ	END=1571488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:12:9
chr1	1571694	.	C	.	.	PASS	END=1571730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:41
chr1	1571731	.	G	.	.	PASS	END=1571843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:49
chr1	1572043	.	C	.	.	PASS	END=1572147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	1572148	.	C	.	.	PASS	END=1572160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	1572258	.	C	.	.	PASS	END=1572366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	1572442	.	C	.	.	PASS	END=1572549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:56
chr1	1572550	.	G	.	.	PASS	END=1572564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:56
chr1	1572769	.	C	.	.	PASS	END=1572846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:52
chr1	1572847	.	T	.	.	PASS	END=1572875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:49
chr1	1573123	.	C	.	.	PASS	END=1573157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:56
chr1	1573158	.	A	.	.	PASS	END=1573177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:52
chr1	1573178	.	C	.	.	PASS	END=1573245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:46
chr1	1573800	.	C	.	.	PASS	END=1573841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:31
chr1	1573842	.	G	.	.	PASS	END=1573889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:28
chr1	1573890	.	C	.	.	PASS	END=1573956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:28
chr1	1575626	.	G	.	.	PASS	END=1575673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:38
chr1	1575674	.	G	.	.	PASS	END=1575704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:38
chr1	1575705	.	G	.	.	PASS	END=1575720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:38
chr1	1575721	.	C	.	.	PASS	END=1575741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:39
chr1	1575742	.	G	.	.	PASS	END=1575813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:39
chr1	1576392	.	T	.	.	PASS	END=1576490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:22
chr1	1576491	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:130:99:24
chr1	1577001	.	C	.	.	LowGQX;LowMQ	END=1577009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:12:7
chr1	1577010	.	C	.	.	LowGQX;LowMQ	END=1577021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:15:8
chr1	1577022	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:76:21:8
chr1	1577023	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:76:0:8
chr1	1577024	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:76:21:8
chr1	1577025	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:76:15:8
chr1	1577026	.	C	.	.	LowGQX;LowMQ	END=1577028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:21:8
chr1	1577029	.	A	.	.	LowGQX;LowMQ	END=1577031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:15:8
chr1	1577032	.	G	.	.	LowGQX;LowMQ	END=1577033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:21:8
chr1	1577034	.	T	.	.	LowGQX;LowMQ	END=1577035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:18:8
chr1	1577036	.	T	.	.	LowGQX;LowMQ	END=1577037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:21:8
chr1	1577038	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:87:12:8
chr1	1577039	.	T	.	.	LowGQX;LowMQ	END=1577043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:21:8
chr1	1577044	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:95:30:8
chr1	1577045	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:94:27:8
chr1	1577046	.	T	.	.	LowMQ	END=1577047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:30:8
chr1	1577048	.	A	.	.	LowGQX;LowMQ	END=1577055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:24:8
chr1	1577056	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:105:18:8
chr1	1577057	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:105:27:8
chr1	1577058	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:106:30:8
chr1	1577059	.	C	.	.	LowGQX;LowMQ	END=1577060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:27:8
chr1	1577061	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:109:30:8
chr1	1577062	.	T	.	.	LowGQX;LowMQ	END=1577067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:21:8
chr1	1577068	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:113:30:8
chr1	1577069	.	C	.	.	LowGQX;LowMQ	END=1577070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:24:8
chr1	1577071	.	C	.	.	LowMQ	END=1577072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:30:8
chr1	1577073	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:119:21:8
chr1	1577074	.	C	.	.	LowMQ	END=1577075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:30:7
chr1	1577076	.	T	.	.	LowGQX;LowMQ	END=1577083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:21:7
chr1	1577084	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:119:18:7
chr1	1577084	.	TTCCTCCTCC	T	1000.68	LowGQ;LowGQX;LowMQ	DP=120;FS=0.000;HRun=0;HaplotypeScore=54.5837;MQ=7;MQ0=110;QD=8.34;SB=-231.61	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:69,51:10:27.09:1043,27,0:7:27:0.425
chr1	1577085	.	T	.	.	LowGQX;LowMQ	DP=121;MQ=7;MQ0=111	GT:AD:DP:MQ	.:69:69:7
chr1	1577086	.	C	.	.	LowGQX;LowMQ	DP=120;MQ=7;MQ0=110	GT:AD:DP:MQ	.:67:68:7
chr1	1577087	.	C	.	.	LowGQX;LowMQ	DP=120;MQ=7;MQ0=110	GT:AD:DP:MQ	.:67:68:7
chr1	1577088	.	T	.	.	LowGQX;LowMQ	DP=123;MQ=7;MQ0=113	GT:AD:DP:MQ	.:71:72:7
chr1	1577089	.	C	.	.	LowGQX;LowMQ	DP=123;MQ=7;MQ0=113	GT:AD:DP:MQ	.:71:72:7
chr1	1577090	.	C	.	.	LowGQX;LowMQ	END=1577093	GT	.
chr1	1577094	.	T	.	.	LowGQX;LowMQ	END=1577103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:21:7
chr1	1577104	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:122:18:7
chr1	1577105	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:119:9:7
chr1	1577106	.	T	.	.	LowGQX;LowMQ	END=1577110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:21:7
chr1	1577111	.	A	.	13.67	LowGQX;LowMQ	DP=119;MQ=7;MQ0=110	GT:AD:DP:GQ:MQ:GQX	0/0:94:119:0.10:7:0
chr1	1577112	.	C	.	.	LowGQX;LowMQ	END=1577113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:15:7
chr1	1577114	.	G	.	.	LowGQX;LowMQ	END=1577115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:21:7
chr1	1577116	.	T	.	.	LowGQX;LowMQ	END=1577117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:15:7
chr1	1577118	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:117:24:7
chr1	1577119	.	T	.	48.02	LowGQX;LowMQ	DP=117;MQ=7;MQ0=108	GT:AD:DP:GQ:MQ:GQX	0/0:90:117:18.03:7:18
chr1	1577120	.	C	.	.	LowGQX;LowMQ	END=1577121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:15:7
chr1	1577122	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:118:21:7
chr1	1577123	.	T	.	.	LowGQX;LowMQ	END=1577124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:12:7
chr1	1577125	.	C	.	.	LowGQX;LowMQ	END=1577126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:21:7
chr1	1577127	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:115:15:7
chr1	1577128	.	C	.	.	LowGQX;LowMQ	END=1577129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:21:7
chr1	1577130	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:109:9:8
chr1	1577131	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:109:24:8
chr1	1577132	.	C	.	.	LowGQX;LowMQ	END=1577133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:12:7
chr1	1577134	.	C	.	.	LowGQX;LowMQ	END=1577135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:21:7
chr1	1577136	.	T	.	.	LowGQX;LowMQ	END=1577138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:15:7
chr1	1577139	.	T	.	.	LowGQX;LowMQ	END=1577141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:18:6
chr1	1577142	.	T	.	.	LowGQX;LowMQ	END=1577143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:12:6
chr1	1577144	.	C	.	.	LowGQX;LowMQ	END=1577148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:15:6
chr1	1577149	.	C	.	.	LowGQX;LowMQ	END=1577151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:12:6
chr1	1577152	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:103:18:6
chr1	1577153	.	T	.	.	LowGQX;LowMQ	END=1577155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:9:6
chr1	1577156	.	T	.	.	LowGQX;LowMQ	END=1577158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:6:6
chr1	1577159	.	C	.	.	LowGQX;LowMQ	END=1577161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:9:6
chr1	1577162	.	A	.	.	LowGQX;LowMQ	END=1577163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:6:5
chr1	1577164	.	A	.	.	LowGQX;LowMQ	END=1577165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:3:5
chr1	1577166	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:101:9:5
chr1	1577167	.	C	.	.	LowGQX;LowMQ	END=1577170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:3:5
chr1	1577171	.	G	.	.	LowGQX;LowMQ	END=1577179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:6:4
chr1	1577180	.	C	.	2.30	LowGQX;LowMQ	DP=93;MQ=4;MQ0=90	GT:AD:DP:GQ:MQ:GQX	0/0:56:93:0:4:0
chr1	1577181	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:93:3:4
chr1	1577205	.	G	.	.	LowGQX;LowMQ	END=1577228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:9:5
chr1	1577229	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:77:6:7
chr1	1577230	.	G	.	.	LowGQX;LowMQ	END=1577234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:12:7
chr1	1577235	.	G	.	.	LowGQX;LowMQ	END=1577257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:18:8
chr1	1577258	.	T	.	.	LowGQX;LowMQ	END=1577263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:21:8
chr1	1577264	.	T	.	.	LowGQX;LowMQ	END=1577265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:18:8
chr1	1577266	.	C	.	.	LowGQX;LowMQ	END=1577269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:24:9
chr1	1577270	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:87:18:9
chr1	1577271	.	C	.	.	LowGQX;LowMQ	END=1577275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:21:8
chr1	1577276	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:100:18:8
chr1	1577277	.	C	.	.	LowGQX;LowMQ	END=1577278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:27:8
chr1	1577279	.	C	.	.	LowMQ	END=1577282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:30:9
chr1	1577283	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:103:27:9
chr1	1577284	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:104:30:9
chr1	1577285	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:108:21:8
chr1	1577286	.	G	.	.	LowMQ	END=1577291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:30:8
chr1	1577292	.	C	.	.	LowGQX;LowMQ	END=1577293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:27:8
chr1	1577294	.	T	.	.	LowMQ	END=1577326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:30:9
chr1	1577327	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:97:21:10
chr1	1577328	.	C	.	.	LowMQ	END=1577336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:30:10
chr1	1577337	.	C	.	.	LowGQX;LowMQ	END=1577338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:21:10
chr1	1577339	.	T	.	.	LowMQ	END=1577341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:30:10
chr1	1577342	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:99:11:11
chr1	1577343	.	T	.	.	LowMQ	END=1577347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:33:11
chr1	1577348	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:95:30:11
chr1	1577349	.	T	.	.	LowMQ	END=1577352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:39:11
chr1	1577353	.	T	.	.	LowMQ	END=1577364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:30:11
chr1	1577637	.	A	.	.	LowGQX;LowMQ	END=1577869	GT	./.
chr1	1580456	.	G	.	.	PASS	END=1580473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:20
chr1	1580474	.	C	.	.	PASS	END=1580478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:20
chr1	1580479	.	C	.	.	LowMQ	END=1580505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:18
chr1	1580506	.	C	.	.	LowMQ	END=1580557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:293:99:18
chr1	1580558	.	T	.	.	PASS	END=1580608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:20
chr1	1580609	.	T	.	.	PASS	END=1580623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:24
chr1	1580643	.	C	.	.	PASS	END=1580708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:30
chr1	1580709	.	A	.	.	PASS	END=1580737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:33
chr1	1580738	.	T	A	808.09	PASS	BaseQRankSum=-0.645;DP=172;Dels=0.00;FS=3.073;HRun=0;HaplotypeScore=9.5700;MQ=33;MQ0=17;MQRankSum=-0.460;QD=4.70;ReadPosRankSum=-0.949;SB=-271.66	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:116,56:172:99:838,0,2793:33:99:0.326
chr1	1580739	.	T	.	.	PASS	END=1580742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:33
chr1	1581420	.	T	.	.	LowGQX	END=1581519	GT	./.
chr1	1581770	.	G	.	.	LowGQX	END=1581796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1581797	.	A	.	.	LowGQX	END=1581869	GT	./.
chr1	1582086	.	C	.	.	LowGQX	END=1582185	GT	./.
chr1	1582265	.	C	.	.	LowGQX	END=1582358	GT	./.
chr1	1582359	.	G	.	.	LowGQX	END=1582363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	1582364	.	T	.	.	LowGQX	.	GT	./.
chr1	1585557	.	A	.	.	LowGQX	END=1585656	GT	./.
chr1	1586813	.	A	.	.	PASS	END=1586859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:58
chr1	1586860	.	T	.	.	PASS	END=1586938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:54
chr1	1588825	.	A	.	.	PASS	END=1588847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:44
chr1	1588848	.	C	.	.	PASS	END=1588935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:38
chr1	1591519	.	C	.	.	LowGQX	END=1591618	GT	./.
chr1	1597186	.	T	.	.	LowGQX	END=1597458	GT	./.
chr1	1599765	.	C	.	.	LowGQX	END=1599911	GT	./.
chr1	1601102	.	C	.	.	LowGQX	END=1601104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1601105	.	T	.	.	LowGQX	.	GT	./.
chr1	1601106	.	A	.	.	LowGQX	END=1601123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1601124	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	1601125	.	A	.	.	LowGQX	END=1601160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1601161	.	T	.	.	LowGQX	END=1601283	GT	./.
chr1	1601512	.	G	.	.	LowGQX	END=1601611	GT	./.
chr1	1602944	.	T	.	.	LowGQX	END=1603068	GT	./.
chr1	1606901	.	C	.	.	LowGQX	END=1607079	GT	./.
chr1	1607451	.	C	.	.	LowGQX	END=1607638	GT	./.
chr1	1607805	.	G	.	.	LowGQX;LowMQ	END=1607882	GT	./.
chr1	1607883	.	T	.	.	LowGQX	END=1608144	GT	./.
chr1	1632408	.	A	.	.	LowGQX	END=1632706	GT	./.
chr1	1632800	.	A	.	.	LowGQX	END=1632923	GT	./.
chr1	1632924	.	G	.	.	LowGQX;LowMQ	END=1632968	GT	./.
chr1	1633047	.	C	.	.	LowGQX;LowMQ	END=1633139	GT	./.
chr1	1633140	.	T	.	.	LowGQX	END=1633245	GT	./.
chr1	1634342	.	A	.	.	LowGQX;LowMQ	END=1634473	GT	./.
chr1	1634474	.	A	.	.	LowGQX;LowMQ	END=1634493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:3:4
chr1	1634507	.	C	.	.	LowGQX;LowMQ	END=1634540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:3:5
chr1	1634541	.	C	.	.	LowGQX;LowMQ	END=1634572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:6:6
chr1	1634573	.	C	.	.	LowGQX;LowMQ	END=1634575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:9:6
chr1	1634576	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:159:3:6
chr1	1634577	.	C	.	.	LowGQX;LowMQ	END=1634591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:9:6
chr1	1634592	.	T	.	.	LowGQX;LowMQ	END=1634593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:6:6
chr1	1634594	.	G	.	.	LowGQX;LowMQ	END=1634601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:9:6
chr1	1634602	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:157:3:6
chr1	1634603	.	C	.	.	LowGQX;LowMQ	END=1634609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:9:6
chr1	1634610	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1634611	.	A	.	.	LowGQX;LowMQ	END=1634612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:6:6
chr1	1634613	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:155:12:6
chr1	1634614	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:155:6:6
chr1	1634615	.	G	.	.	LowGQX;LowMQ	END=1634621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:9:6
chr1	1634622	.	T	.	.	LowGQX;LowMQ	END=1634623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:6:7
chr1	1634624	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:146:12:7
chr1	1634625	.	A	.	.	LowGQX;LowMQ	END=1634647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:6:4
chr1	1634648	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1634649	.	T	.	.	LowGQX;LowMQ	END=1634671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:3:4
chr1	1634672	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1634673	.	G	.	.	LowGQX;LowMQ	END=1634691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:3:5
chr1	1634692	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1634693	.	G	.	.	LowGQX;LowMQ	END=1634702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:3:4
chr1	1634703	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1634704	.	G	.	.	LowGQX;LowMQ	END=1634705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:3:4
chr1	1634706	.	A	.	.	LowGQX;LowMQ	END=1634707	GT	./.
chr1	1634708	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:96:3:4
chr1	1634914	.	C	.	.	PASS	END=1634923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:60:33
chr1	1634924	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:33:33
chr1	1634925	.	G	.	.	PASS	END=1634929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:60:33
chr1	1634930	.	A	.	.	PASS	END=1634931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:51:36
chr1	1634932	.	G	.	.	PASS	END=1634936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:63:38
chr1	1634937	.	G	.	.	PASS	END=1634943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:72:40
chr1	1634944	.	G	.	.	PASS	END=1634995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:78:42
chr1	1634996	.	G	.	.	PASS	END=1635003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:55
chr1	1635004	.	T	C	1620.21	PASS	DP=59;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.6815;MQ=57;MQ0=1;QD=27.46;SB=-855.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,59:59:99:1653,123,0:57:99:1.000
chr1	1635005	.	T	.	.	PASS	END=1635063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:57
chr1	1635262	.	C	.	.	PASS	END=1635311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	1635312	.	G	.	.	PASS	END=1635379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	1635477	.	C	.	.	PASS	END=1635567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:59
chr1	1635568	.	C	.	.	PASS	END=1635585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	1635661	.	C	.	.	PASS	END=1635748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:47
chr1	1635749	.	C	A	2479.27	PASS	BaseQRankSum=0.798;DP=89;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=8.5745;MQ=48;MQ0=0;MQRankSum=-1.032;QD=27.86;ReadPosRankSum=-1.304;SB=-1052.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,88:89:99:2512,165,0:48:99:0.989
chr1	1635750	.	C	.	.	PASS	END=1635783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:48
chr1	1635921	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:90:57
chr1	1635922	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:63:57
chr1	1635923	.	A	.	.	PASS	END=1635924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:57
chr1	1635925	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:68:57
chr1	1635926	.	G	.	.	PASS	END=1635967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:53
chr1	1635968	.	G	.	.	PASS	END=1636043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:46
chr1	1636044	.	G	A	1561.56	PASS	DP=64;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.6281;MQ=47;MQ0=2;QD=24.40;SB=-983.73	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,64:64:99:1595,120,0:47:99:1.000
chr1	1636045	.	T	.	.	PASS	END=1636083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:44
chr1	1636084	.	A	.	.	PASS	END=1636094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:43
chr1	1636241	.	C	.	.	PASS	END=1636244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	1636245	.	G	.	.	PASS	END=1636265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:59
chr1	1636266	.	A	.	.	PASS	END=1636271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	1636272	.	C	.	.	PASS	END=1636273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	1636274	.	C	T	623.96	LowGQ;LowGQX	BaseQRankSum=0.473;DP=29;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.9965;MQ=60;MQ0=0;MQRankSum=-0.301;QD=21.52;ReadPosRankSum=0.559;SB=-243.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,27:29:12.43:656,12,0:60:12:0.931
chr1	1636275	.	C	.	.	PASS	END=1636284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:59
chr1	1636285	.	C	.	.	PASS	END=1636294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:59
chr1	1636295	.	T	.	.	PASS	END=1636301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:59
chr1	1636302	.	A	.	.	PASS	END=1636304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:54:59
chr1	1636305	.	C	.	.	PASS	END=1636314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:57:59
chr1	1636315	.	G	.	.	PASS	END=1636334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:59
chr1	1636335	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:50:59
chr1	1636336	.	T	.	.	PASS	END=1636340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:59
chr1	1636341	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:69:59
chr1	1636342	.	C	.	.	PASS	END=1636347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:59
chr1	1636348	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:58:59
chr1	1636349	.	G	.	.	PASS	END=1636452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:48
chr1	1636453	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:57:48
chr1	1636454	.	C	.	.	PASS	END=1636464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:46
chr1	1637019	.	C	.	.	LowGQX;LowMQ	END=1637025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:3:9
chr1	1637026	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1637027	.	G	.	.	LowGQX;LowMQ	END=1637030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:3:7
chr1	1637031	.	G	.	.	LowGQX;LowMQ	END=1637039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:3:6
chr1	1637040	.	C	.	.	LowGQX;LowMQ	END=1637050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:3:5
chr1	1637051	.	G	.	.	LowGQX;LowMQ	END=1637064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:3:4
chr1	1637065	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1637066	.	G	.	.	LowGQX;LowMQ	END=1637071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:3:4
chr1	1637072	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1637073	.	C	.	.	LowGQX;LowMQ	END=1637083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:3:4
chr1	1637084	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1637085	.	T	.	.	LowGQX;LowMQ	END=1637087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:3:4
chr1	1637088	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1637089	.	T	.	.	LowGQX;LowMQ	END=1637092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:3:4
chr1	1637093	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1637094	.	T	.	.	LowGQX;LowMQ	END=1637100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:3:4
chr1	1637101	.	C	.	.	LowGQX;LowMQ	END=1637106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:9:8
chr1	1637107	.	A	.	.	LowGQX;LowMQ	END=1637110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:6:8
chr1	1637111	.	C	.	.	LowGQX;LowMQ	END=1637123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:12:9
chr1	1637124	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:63:9:9
chr1	1637125	.	T	.	.	LowGQX;LowMQ	END=1637126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:15:9
chr1	1637127	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:63:9:9
chr1	1637128	.	T	.	.	LowGQX;LowMQ	END=1637143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:12:9
chr1	1637144	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:61:6:9
chr1	1637145	.	C	.	.	LowGQX;LowMQ	END=1637171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:12:9
chr1	1637172	.	C	.	.	LowGQX;LowMQ	END=1637176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:9:10
chr1	1637177	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:47:6:10
chr1	1637178	.	A	.	.	LowGQX;LowMQ	END=1637180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:12:10
chr1	1637181	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:44:6:10
chr1	1637182	.	A	.	.	LowGQX;LowMQ	END=1637198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:9:10
chr1	1637199	.	T	.	.	LowGQX;LowMQ	END=1637207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:9:13
chr1	1637208	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:25:0:14
chr1	1637209	.	T	.	.	LowGQX;LowMQ	END=1637210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:12:14
chr1	1637211	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:25:6:14
chr1	1637212	.	C	.	.	LowGQX;LowMQ	END=1637229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:9:14
chr1	1638847	.	C	.	.	PASS	END=1638850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:48
chr1	1638851	.	C	.	.	PASS	END=1638852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:69:48
chr1	1638853	.	G	.	.	PASS	END=1638912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:45
chr1	1638913	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:72:45
chr1	1638914	.	G	.	.	PASS	END=1638917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:45
chr1	1638918	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:68:44
chr1	1638919	.	C	.	.	PASS	END=1638945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:84:38
chr1	1638946	.	T	.	.	PASS	END=1638948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:75:37
chr1	1638949	.	G	.	.	PASS	END=1638954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:37
chr1	1638955	.	T	.	.	PASS	END=1638956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:66:37
chr1	1638957	.	C	.	.	PASS	END=1638979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:78:36
chr1	1638980	.	T	.	.	PASS	END=1638999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:35
chr1	1639000	.	C	.	.	PASS	END=1639004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:66:34
chr1	1639005	.	T	.	.	PASS	END=1639024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:54:31
chr1	1639025	.	T	.	.	PASS	END=1639045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:32
chr1	1639046	.	C	G	368.00	SB	BaseQRankSum=-0.313;DP=25;Dels=0.00;FS=13.554;HRun=1;HaplotypeScore=0.0000;MQ=33;MQ0=4;MQRankSum=-3.090;QD=14.72;ReadPosRankSum=-1.478;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:8,17:25:44.42:398,0,44:33:44:0.680
chr1	1639047	.	G	.	.	PASS	END=1639053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:33
chr1	1639054	.	G	.	.	PASS	END=1639055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:34
chr1	1639602	.	T	.	.	PASS	END=1639701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:92:20
chr1	1640211	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:58:3:4
chr1	1640212	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1640213	.	C	.	.	LowGQX;LowMQ	END=1640214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:3:4
chr1	1640215	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1640216	.	T	.	.	LowGQX;LowMQ	END=1640217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:3:3
chr1	1640218	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1640219	.	T	.	.	LowGQX;LowMQ	END=1640223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:3:3
chr1	1640224	.	G	.	.	LowGQX;LowMQ	END=1640225	GT	./.
chr1	1640226	.	G	.	.	LowGQX;LowMQ	END=1640236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:3:3
chr1	1640237	.	A	.	.	LowGQX;LowMQ	END=1640268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:3:3
chr1	1640269	.	C	.	.	LowGQX;LowMQ	END=1640285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:3:2
chr1	1640286	.	T	.	.	LowGQX;LowMQ	END=1640289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:9:4
chr1	1640290	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:120:0:4
chr1	1640291	.	C	.	.	LowGQX;LowMQ	END=1640294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:9:4
chr1	1640295	.	T	.	39.02	LowGQX;LowMQ	DP=122;MQ=5;MQ0=118	GT:AD:DP:GQ:MQ:GQX	0/0:64:65:9.02:5:9
chr1	1640296	.	C	.	36.01	LowGQX;LowMQ	DP=122;MQ=5;MQ0=118	GT:AD:DP:GQ:MQ:GQX	0/0:62:65:6.01:5:6
chr1	1640297	.	C	.	42.02	LowGQX;LowMQ	DP=122;MQ=5;MQ0=118	GT:AD:DP:GQ:MQ:GQX	0/0:63:65:12.03:5:12
chr1	1640298	.	T	.	39.02	LowGQX;LowMQ	DP=121;MQ=5;MQ0=117	GT:AD:DP:GQ:MQ:GQX	0/0:65:66:9.02:5:9
chr1	1640299	.	C	.	39.02	LowGQX;LowMQ	DP=120;MQ=5;MQ0=116	GT:AD:DP:GQ:MQ:GQX	0/0:64:65:9.02:5:9
chr1	1640300	.	C	.	36.01	LowGQX;LowMQ	DP=120;MQ=5;MQ0=116	GT:AD:DP:GQ:MQ:GQX	0/0:64:65:6.01:5:6
chr1	1640301	.	T	.	42.02	LowGQX;LowMQ	DP=121;MQ=5;MQ0=117	GT:AD:DP:GQ:MQ:GQX	0/0:64:66:12.03:5:12
chr1	1640302	.	C	.	42.02	LowGQX;LowMQ	DP=122;MQ=5;MQ0=118	GT:AD:DP:GQ:MQ:GQX	0/0:67:67:12.03:5:12
chr1	1640303	.	C	.	39.02	LowGQX;LowMQ	DP=116;MQ=5;MQ0=112	GT:AD:DP:GQ:MQ:GQX	0/0:53:61:9.02:5:9
chr1	1640304	.	T	.	.	LowGQX;LowMQ	END=1640309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:9:5
chr1	1640310	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:121:0:5
chr1	1640311	.	C	.	.	LowGQX;LowMQ	END=1640312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:9:5
chr1	1640313	.	G	.	.	LowGQX;LowMQ	END=1640316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:12:5
chr1	1640317	.	C	.	.	LowGQX;LowMQ	END=1640319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:15:7
chr1	1640320	.	C	.	.	LowGQX;LowMQ	END=1640323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:12:7
chr1	1640324	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:121:18:7
chr1	1640325	.	G	.	.	LowGQX;LowMQ	END=1640326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:9:7
chr1	1640327	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:124:18:7
chr1	1640328	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:122:12:7
chr1	1640329	.	T	.	.	LowGQX;LowMQ	END=1640331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:6:7
chr1	1640332	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:122:18:7
chr1	1640333	.	T	.	.	LowGQX;LowMQ	END=1640334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:12:7
chr1	1640335	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:121:18:7
chr1	1640336	.	C	.	.	LowGQX;LowMQ	END=1640337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:9:6
chr1	1640338	.	C	.	.	LowGQX;LowMQ	END=1640341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:15:7
chr1	1640342	.	C	.	.	LowGQX;LowMQ	END=1640343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:6:7
chr1	1640344	.	C	.	.	LowGQX;LowMQ	END=1640345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:15:7
chr1	1640346	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:117:6:7
chr1	1640347	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:113:15:7
chr1	1640348	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:112:6:7
chr1	1640349	.	T	.	.	LowGQX;LowMQ	END=1640350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:12:7
chr1	1640351	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:111:18:7
chr1	1640352	.	T	.	.	LowGQX;LowMQ	END=1640355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:12:7
chr1	1640356	.	C	.	.	LowGQX;LowMQ	END=1640357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:9:7
chr1	1640358	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:105:6:7
chr1	1640359	.	C	.	.	LowGQX;LowMQ	END=1640363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:9:7
chr1	1640364	.	T	.	.	LowGQX;LowMQ	END=1640365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:12:7
chr1	1640366	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:99:6:7
chr1	1640367	.	T	.	.	LowGQX;LowMQ	END=1640370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:15:7
chr1	1640371	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:101:9:8
chr1	1640372	.	A	.	.	LowGQX;LowMQ	END=1640373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:18:8
chr1	1640374	.	A	.	.	LowGQX;LowMQ	END=1640375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:6:8
chr1	1640376	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:102:12:8
chr1	1640377	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:102:18:8
chr1	1640378	.	T	.	.	LowGQX;LowMQ	END=1640380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:12:8
chr1	1640381	.	G	.	.	LowGQX;LowMQ	END=1640383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:15:8
chr1	1640384	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:104:12:8
chr1	1640385	.	G	.	.	LowGQX;LowMQ	END=1640386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:21:8
chr1	1640387	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:103:15:8
chr1	1640388	.	T	.	.	LowGQX;LowMQ	END=1640389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:21:8
chr1	1640390	.	C	.	42.02	LowGQX;LowMQ	DP=97;MQ=8;MQ0=90	GT:AD:DP:GQ:MQ:GQX	0/0:47:97:12.03:8:12
chr1	1640391	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:98:15:8
chr1	1640415	.	G	.	.	LowGQX;LowMQ	END=1640416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:27:10
chr1	1640417	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:88:30:10
chr1	1640418	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:84:27:10
chr1	1640419	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:86:30:10
chr1	1640420	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:87:27:11
chr1	1640421	.	A	.	.	LowMQ	END=1640430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:30:11
chr1	1640431	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:82:45:12
chr1	1640432	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:82:33:13
chr1	1640433	.	C	.	.	LowMQ	END=1640473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:42:13
chr1	1640474	.	T	.	.	LowMQ	END=1640482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:45:13
chr1	1640483	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:82:42:13
chr1	1640484	.	G	.	.	LowMQ	END=1640485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:54:13
chr1	1640486	.	A	.	.	LowMQ	END=1640487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:42:13
chr1	1640488	.	T	.	.	LowMQ	END=1640499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:57:13
chr1	1640500	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:91:75:14
chr1	1640501	.	T	.	.	LowMQ	END=1640503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:54:14
chr1	1640504	.	T	.	.	LowMQ	END=1640529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:72:14
chr1	1640530	.	A	.	.	LowMQ	END=1640536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:87:16
chr1	1640537	.	A	.	.	LowMQ	END=1640551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:72:17
chr1	1640552	.	C	.	.	LowMQ	END=1640557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:69:17
chr1	1640558	.	T	.	.	LowMQ	END=1640559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:66:17
chr1	1640560	.	T	.	.	LowMQ	END=1640561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:90:18
chr1	1640562	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:83:69:18
chr1	1640563	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:83:90:18
chr1	1640564	.	C	.	.	LowMQ	END=1640591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:69:17
chr1	1640592	.	A	.	.	LowMQ	END=1640601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:66:19
chr1	1640602	.	G	.	.	PASS	END=1640625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:63:20
chr1	1640846	.	G	.	.	LowGQX;LowMQ	END=1640984	GT	./.
chr1	1640985	.	C	.	.	LowGQX;LowMQ	END=1640988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:3:3
chr1	1640989	.	T	.	.	LowGQX;LowMQ	END=1640990	GT	./.
chr1	1640991	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:78:3:3
chr1	1640992	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1640993	.	G	.	.	LowGQX;LowMQ	END=1640997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:3:3
chr1	1640998	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1640999	.	G	.	.	LowGQX;LowMQ	END=1641000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:6:4
chr1	1641001	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1641002	.	G	.	.	LowGQX;LowMQ	END=1641006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:3:4
chr1	1641007	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1641008	.	G	.	.	LowGQX;LowMQ	END=1641011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:3:4
chr1	1641012	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1641013	.	C	.	.	LowGQX;LowMQ	END=1641016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:3:4
chr1	1641017	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	1641018	.	C	.	.	LowGQX;LowMQ	END=1641035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:3:4
chr1	1641036	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:83:0:4
chr1	1641037	.	T	.	.	LowGQX;LowMQ	END=1641071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:3:4
chr1	1641072	.	T	.	.	LowGQX;LowMQ	END=1641079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:3:5
chr1	1643702	.	C	.	.	LowGQX;LowMQ	END=1643704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:21:8
chr1	1643705	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:115:15:8
chr1	1643706	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:116:27:8
chr1	1643707	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:116:18:8
chr1	1643708	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:117:24:8
chr1	1643709	.	T	.	.	LowGQX;LowMQ	END=1643710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:15:8
chr1	1643711	.	C	.	.	LowGQX;LowMQ	END=1643716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:24:8
chr1	1643717	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:126:18:8
chr1	1643718	.	C	.	.	LowGQX;LowMQ	END=1643722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:21:8
chr1	1643723	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:136:15:8
chr1	1643724	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:136:30:8
chr1	1643725	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:134:27:8
chr1	1643726	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:134:30:8
chr1	1643727	.	T	.	.	LowGQX;LowMQ	END=1643729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:21:8
chr1	1643730	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:136:30:8
chr1	1643731	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:136:27:8
chr1	1643732	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:136:30:8
chr1	1643733	.	G	.	.	LowGQX;LowMQ	END=1643735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:24:8
chr1	1643736	.	C	.	.	LowMQ	END=1643737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:30:8
chr1	1643738	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:144:21:8
chr1	1643739	.	C	.	.	LowMQ	END=1643749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:30:8
chr1	1643750	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:148:12:8
chr1	1643751	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:148:27:8
chr1	1643752	.	G	.	.	LowMQ	END=1643755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:30:8
chr1	1643756	.	T	.	.	LowGQX;LowMQ	END=1643757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:21:8
chr1	1643758	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:150:30:8
chr1	1643759	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:156:27:8
chr1	1643760	.	T	.	.	LowMQ	END=1643762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:30:8
chr1	1643763	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:155:27:8
chr1	1643764	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:155:30:8
chr1	1643765	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:155:24:8
chr1	1643766	.	C	.	.	LowMQ	END=1643767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:33:7
chr1	1643768	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:147:27:7
chr1	1643769	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:147:33:7
chr1	1643770	.	C	.	.	LowGQX;LowMQ	END=1643772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:24:7
chr1	1643773	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:144:18:7
chr1	1643774	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:144:27:7
chr1	1643775	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:143:30:7
chr1	1643776	.	C	.	.	LowGQX;LowMQ	END=1643780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:21:7
chr1	1643781	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:141:30:7
chr1	1643782	.	C	.	.	LowGQX;LowMQ	END=1643788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:21:7
chr1	1643789	.	C	.	.	LowGQX;LowMQ	END=1643791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:18:7
chr1	1643792	.	A	.	.	LowGQX;LowMQ	END=1643795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:21:6
chr1	1643796	.	T	.	.	LowGQX;LowMQ	END=1643800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:15:6
chr1	1643801	.	T	.	.	LowGQX;LowMQ	END=1643804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:12:6
chr1	1643805	.	G	.	.	LowGQX;LowMQ	END=1643806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:15:6
chr1	1643807	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:115:12:6
chr1	1643808	.	C	.	.	LowGQX;LowMQ	END=1643812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:15:6
chr1	1643813	.	T	.	.	LowGQX;LowMQ	END=1643818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:12:6
chr1	1643819	.	T	.	.	LowGQX;LowMQ	END=1643827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:15:6
chr1	1643828	.	T	.	.	LowGQX;LowMQ	END=1643846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:12:7
chr1	1643847	.	G	.	.	LowGQX;LowMQ	END=1643855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:9:7
chr1	1643856	.	C	.	.	LowGQX;LowMQ	END=1643863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:12:8
chr1	1643864	.	C	.	.	LowGQX;LowMQ	END=1643872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:9:10
chr1	1643873	.	A	.	.	LowGQX;LowMQ	END=1643881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:9:9
chr1	1643882	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:19:0:10
chr1	1643883	.	T	.	.	LowGQX;LowMQ	END=1643887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:6:9
chr1	1643888	.	G	.	.	LowGQX;LowMQ	END=1643890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:3:9
chr1	1647784	.	C	.	.	PASS	END=1647813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	1647814	.	T	C	2202.91	PASS	BaseQRankSum=-0.051;DP=117;Dels=0.00;FS=11.405;HRun=0;HaplotypeScore=17.9915;MQ=60;MQ0=0;MQRankSum=0.033;QD=18.83;ReadPosRankSum=-1.688;SB=-657.61	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,82:117:99:2233,0,622:60:99:0.701
chr1	1647815	.	T	.	.	PASS	END=1647847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	1647848	.	G	.	.	PASS	END=1647870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	1647871	.	T	C	2455.79	PASS	BaseQRankSum=-1.717;DP=161;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=1.065;QD=15.25;ReadPosRankSum=0.118;SB=-1006.78	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:58,103:161:99:2486,0,1294:60:99:0.640
chr1	1647872	.	C	.	.	PASS	END=1647893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	1647893	.	C	CTTTCTT	6932.90	PASS	BaseQRankSum=9.260;DP=149;FS=0.657;HRun=0;HaplotypeScore=1322.4550;MQ=60;MQ0=0;MQRankSum=-0.241;QD=46.53;ReadPosRankSum=0.800;SB=-3440.24	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:65,83:149:99:6933,0,3750:60:99:0.561
chr1	1647894	.	T	.	.	PASS	END=1647917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	1650716	.	G	.	.	PASS	END=1650759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	1650760	.	T	.	.	PASS	END=1650773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	1650774	.	T	.	.	PASS	END=1650786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	1650787	.	T	C	1836.40	PASS	BaseQRankSum=-0.593;DP=103;Dels=0.00;FS=1.753;HRun=0;HaplotypeScore=5.7338;MQ=60;MQ0=0;MQRankSum=-0.922;QD=17.83;ReadPosRankSum=-0.824;SB=-862.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,69:103:99:1866,0,764:60:99:0.670
chr1	1650788	.	G	.	.	PASS	END=1650796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	1650797	.	A	G	1935.14	PASS	BaseQRankSum=-0.151;DP=107;Dels=0.00;FS=0.793;HRun=0;HaplotypeScore=5.6815;MQ=60;MQ0=0;MQRankSum=-0.579;QD=18.09;ReadPosRankSum=-1.014;SB=-1003.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,73:107:99:1965,0,818:60:99:0.682
chr1	1650798	.	T	.	.	PASS	END=1650800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	1650801	.	T	C	1940.71	PASS	BaseQRankSum=0.238;DP=107;Dels=0.00;FS=0.784;HRun=0;HaplotypeScore=7.6281;MQ=60;MQ0=0;MQRankSum=1.168;QD=18.14;ReadPosRankSum=-1.134;SB=-1069.08	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,73:107:99:1971,0,801:60:99:0.682
chr1	1650802	.	T	.	.	PASS	END=1650806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	1650807	.	T	C	687.27	PASS	BaseQRankSum=-0.347;DP=111;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=6.6812;MQ=60;MQ0=0;MQRankSum=0.160;QD=6.19;ReadPosRankSum=0.635;SB=-431.13	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:75,35:111:99:717,0,2018:60:99:0.318
chr1	1650808	.	C	.	.	PASS	END=1650831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	1650832	.	A	G	2257.47	PASS	BaseQRankSum=-1.142;DP=128;Dels=0.00;FS=1.635;HRun=0;HaplotypeScore=7.5949;MQ=60;MQ0=0;MQRankSum=2.822;QD=17.64;ReadPosRankSum=-1.153;SB=-1155.68	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:36,90:128:99:2287,0,753:60:99:0.714
chr1	1650833	.	C	.	.	PASS	END=1650844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	1650845	.	G	A	770.98	PASS	BaseQRankSum=3.506;DP=118;Dels=0.00;FS=4.118;HRun=1;HaplotypeScore=9.5219;MQ=60;MQ0=0;MQRankSum=1.644;QD=6.53;ReadPosRankSum=-0.165;SB=-416.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:83,35:118:99:801,0,2115:60:99:0.297
chr1	1650846	.	A	.	.	PASS	END=1650894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	1653034	.	C	.	.	PASS	END=1653076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:54
chr1	1653077	.	A	.	.	PASS	END=1653150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:50
chr1	1653921	.	C	.	.	LowGQX	END=1653938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:59
chr1	1653939	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:59
chr1	1653940	.	T	.	.	LowGQX	END=1653948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:59
chr1	1653949	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:59
chr1	1653950	.	C	.	.	LowGQX	END=1653985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:59
chr1	1653986	.	C	.	.	LowGQX	END=1653987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:59
chr1	1653988	.	T	.	.	LowGQX	END=1653999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:59
chr1	1654000	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:59
chr1	1654001	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:59
chr1	1654002	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:59
chr1	1654003	.	T	.	.	LowGQX	END=1654006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:59
chr1	1654007	.	A	T	113.82	LowGQ;LowGQX;SB	DP=4;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=59;MQ0=0;QD=28.45;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,4:4:12.04:146,12,0:59:12:1.000
chr1	1654008	.	G	.	.	LowGQX	END=1654009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:59
chr1	1654010	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:59
chr1	1654011	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:59
chr1	1654012	.	A	.	2.30	LowGQX	DP=2;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:2:0:59:0
chr1	1654013	.	C	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=50;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:50:3:1.000
chr1	1654014	.	A	.	.	LowGQX	END=1654023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	1654024	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:46
chr1	1654025	.	A	.	39.02	LowGQX	DP=4;MQ=46;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:46:9
chr1	1654026	.	C	.	.	LowGQX	END=1654037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:46
chr1	1654038	.	G	A	160.65	LowGQ;LowGQX;SB	DP=5;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=46;MQ0=0;QD=32.13;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,5:5:15.05:193,15,0:46:15:1.000
chr1	1654039	.	G	.	.	LowGQX	END=1654052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:46
chr1	1654053	.	C	.	.	LowGQX	END=1654057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:49
chr1	1654058	.	C	T	242.27	LowGQ;LowGQX	DP=7;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=49;MQ0=0;QD=34.61;SB=-39.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,7:7:21.07:275,21,0:49:21:1.000
chr1	1654059	.	C	.	.	LowGQX	END=1654063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:49
chr1	1654064	.	A	T	242.27	LowGQ;LowGQX	DP=7;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=49;MQ0=0;QD=34.61;SB=-39.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,7:7:21.07:275,21,0:49:21:1.000
chr1	1654065	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:49
chr1	1654065	.	AGCG	A	415.82	LowGQ;LowGQX	DP=7;FS=0.000;HRun=0;HaplotypeScore=75.7264;MQ=49;MQ0=0;QD=59.40;SB=-65.33	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,7:7:21.07:458,21,0:49:21:1.000
chr1	1654066	.	G	.	.	LowGQX	END=1654068	GT	.
chr1	1654069	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:49
chr1	1654070	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:49
chr1	1654071	.	G	.	.	LowGQX	END=1654072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:49
chr1	1654073	.	T	.	.	PASS	END=1654080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:49
chr1	1654092	.	C	.	.	PASS	END=1654094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:49
chr1	1654095	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:49
chr1	1654096	.	G	.	.	PASS	END=1654107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:49
chr1	1654108	.	C	.	.	PASS	END=1654150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:48
chr1	1654151	.	T	.	.	PASS	END=1654170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:42
chr1	1654171	.	T	.	.	PASS	END=1654195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:39:36
chr1	1654196	.	T	.	.	PASS	END=1654210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:39:34
chr1	1654211	.	A	.	.	PASS	END=1654253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:36:31
chr1	1654254	.	C	.	.	PASS	END=1654257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:33:30
chr1	1656807	.	A	.	.	LowGQX	END=1656906	GT	./.
chr1	1663822	.	A	.	.	LowGQX	END=1663978	GT	./.
chr1	1666127	.	A	.	.	LowGQX	END=1666335	GT	./.
chr1	1669758	.	A	.	.	LowGQX	END=1669937	GT	./.
chr1	1670308	.	A	.	.	LowGQX	END=1670498	GT	./.
chr1	1670662	.	A	.	.	LowGQX	END=1671001	GT	./.
chr1	1684341	.	A	.	.	LowGQX	END=1684416	GT	./.
chr1	1684417	.	G	.	.	LowGQX	END=1684442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1684443	.	A	.	.	LowGQX	.	GT	./.
chr1	1684444	.	C	.	.	LowGQX	END=1684454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1684455	.	A	.	.	LowGQX	.	GT	./.
chr1	1684456	.	C	.	.	LowGQX	END=1684460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1684461	.	A	.	.	LowGQX	.	GT	./.
chr1	1684462	.	T	.	.	LowGQX	END=1684495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1684496	.	G	.	.	LowGQX	.	GT	./.
chr1	1684497	.	A	.	.	LowGQX	END=1684500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1684501	.	T	.	.	LowGQX	.	GT	./.
chr1	1684998	.	G	.	.	LowGQX	END=1685097	GT	./.
chr1	1685467	.	A	.	.	LowGQX	END=1685521	GT	./.
chr1	1685522	.	G	.	.	LowGQX	END=1685640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1685641	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1685642	.	T	.	.	LowGQX	END=1685674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1685675	.	C	.	.	LowGQX	END=1685677	GT	./.
chr1	1685691	.	T	.	.	LowGQX	END=1685820	GT	./.
chr1	1685821	.	A	.	.	LowGQX	END=1685824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1685981	.	A	.	.	LowGQX	END=1685993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1685994	.	T	.	.	LowGQX	END=1686139	GT	./.
chr1	1686811	.	A	.	.	LowGQX	END=1686813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686814	.	C	.	.	LowGQX	.	GT	./.
chr1	1686815	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686816	.	C	.	.	LowGQX	END=1686818	GT	./.
chr1	1686819	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686820	.	C	.	.	LowGQX	END=1686821	GT	./.
chr1	1686822	.	C	.	.	LowGQX	END=1686830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686831	.	C	.	.	LowGQX	.	GT	./.
chr1	1686832	.	T	.	.	LowGQX	END=1686833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686834	.	G	.	.	LowGQX	END=1686835	GT	./.
chr1	1686836	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686837	.	A	.	.	LowGQX	.	GT	./.
chr1	1686838	.	C	.	.	LowGQX	END=1686840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686841	.	A	.	.	LowGQX	END=1686842	GT	./.
chr1	1686843	.	A	.	.	LowGQX	END=1686846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686847	.	C	.	.	LowGQX	.	GT	./.
chr1	1686848	.	T	.	.	LowGQX	END=1686850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686851	.	A	.	.	LowGQX	.	GT	./.
chr1	1686852	.	A	.	.	LowGQX	END=1686855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686856	.	G	.	.	LowGQX	.	GT	./.
chr1	1686857	.	A	.	.	LowGQX	END=1686859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686860	.	G	.	.	LowGQX	END=1686862	GT	./.
chr1	1686863	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686864	.	T	.	.	LowGQX	END=1686865	GT	./.
chr1	1686866	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686867	.	G	.	.	LowGQX	.	GT	./.
chr1	1686868	.	G	.	.	LowGQX	END=1686871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686872	.	C	.	.	LowGQX	.	GT	./.
chr1	1686873	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686874	.	C	.	.	LowGQX	.	GT	./.
chr1	1686875	.	A	.	.	LowGQX	END=1686877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686878	.	G	.	.	LowGQX	.	GT	./.
chr1	1686879	.	A	.	.	LowGQX	END=1686880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686881	.	C	.	.	LowGQX	END=1686883	GT	./.
chr1	1686884	.	A	.	.	LowGQX	END=1686889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686890	.	A	.	.	LowGQX	.	GT	./.
chr1	1686891	.	A	.	.	LowGQX	END=1686895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686896	.	A	.	.	LowGQX	.	GT	./.
chr1	1686897	.	T	.	.	LowGQX	END=1686900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686901	.	C	.	.	LowGQX	.	GT	./.
chr1	1686902	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686903	.	G	.	.	LowGQX	END=1686905	GT	./.
chr1	1686906	.	G	.	.	LowGQX	END=1686912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686913	.	G	.	.	LowGQX	.	GT	./.
chr1	1686914	.	C	.	.	LowGQX	END=1686916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1686917	.	T	.	.	LowGQX	.	GT	./.
chr1	1687690	.	G	.	.	LowGQX	END=1687723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1687724	.	C	.	.	LowGQX	END=1687789	GT	./.
chr1	1687940	.	A	.	.	LowGQX	END=1688096	GT	./.
chr1	1688250	.	T	.	.	LowGQX	END=1688349	GT	./.
chr1	1688545	.	C	.	.	LowGQX	END=1688620	GT	./.
chr1	1688621	.	T	.	.	LowGQX	END=1688648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1688649	.	A	.	.	LowGQX	.	GT	./.
chr1	1688650	.	C	.	.	LowGQX	END=1688692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1688693	.	A	.	.	LowGQX	.	GT	./.
chr1	1688694	.	C	.	.	LowGQX	END=1688751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1689803	.	C	.	.	LowGQX	END=1689970	GT	./.
chr1	1690539	.	C	.	.	LowGQX	END=1690611	GT	./.
chr1	1690612	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1690613	.	C	.	.	LowGQX	.	GT	./.
chr1	1690614	.	G	.	.	LowGQX	END=1690620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1690621	.	G	.	.	LowGQX	.	GT	./.
chr1	1690622	.	G	.	.	LowGQX	END=1690624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1690625	.	C	.	.	LowGQX	END=1690626	GT	./.
chr1	1690627	.	G	.	.	LowGQX	END=1690629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1690630	.	A	.	.	LowGQX	.	GT	./.
chr1	1690631	.	C	.	.	LowGQX	END=1690634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1690635	.	C	.	.	LowGQX	.	GT	./.
chr1	1690636	.	C	.	.	LowGQX	END=1690642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1690643	.	T	.	.	LowGQX	.	GT	./.
chr1	1690644	.	G	.	.	LowGQX	END=1690645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1690646	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	1690647	.	A	.	.	LowGQX	END=1690649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1690650	.	A	.	.	LowGQX	.	GT	./.
chr1	1690651	.	C	.	.	LowGQX	END=1690652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1690653	.	A	.	.	LowGQX	END=1690655	GT	./.
chr1	1690656	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1690657	.	A	.	.	LowGQX	END=1690658	GT	./.
chr1	1690659	.	C	.	.	LowGQX	END=1690662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1690663	.	T	.	.	LowGQX	.	GT	./.
chr1	1690664	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1690665	.	G	.	.	LowGQX	END=1690666	GT	./.
chr1	1690667	.	C	.	.	LowGQX	END=1690673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1690674	.	C	.	.	LowGQX	END=1690676	GT	./.
chr1	1690677	.	G	.	.	LowGQX	END=1690680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1690681	.	A	.	.	LowGQX	.	GT	./.
chr1	1690682	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1691172	.	C	.	.	LowGQX	END=1691182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1691183	.	T	.	.	LowGQX	.	GT	./.
chr1	1691184	.	G	.	.	LowGQX	END=1691197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1691198	.	C	.	.	LowGQX	END=1691326	GT	./.
chr1	1691327	.	G	.	.	LowGQX	END=1691330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1691331	.	A	.	.	LowGQX	.	GT	./.
chr1	1691332	.	A	.	.	LowGQX	END=1691336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1691337	.	T	.	.	LowGQX	.	GT	./.
chr1	1691338	.	G	.	.	LowGQX	END=1691340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1691341	.	T	.	.	LowGQX	.	GT	./.
chr1	1693383	.	G	.	.	LowGQX	END=1693403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1693404	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	1693405	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	1693406	.	T	.	.	LowGQX	END=1693427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1693428	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	1693429	.	T	.	.	LowGQX	END=1693445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1693446	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	1693447	.	G	.	.	LowGQX	END=1693451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1693452	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	1693453	.	C	.	.	LowGQX	END=1693482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1696665	.	A	.	.	LowGQX	END=1696775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1696776	.	A	.	.	LowGQX	.	GT	./.
chr1	1696777	.	G	.	.	LowGQX	END=1696788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1696789	.	A	.	.	LowGQX	.	GT	./.
chr1	1696790	.	G	.	.	LowGQX	END=1696791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1696792	.	C	.	.	LowGQX	.	GT	./.
chr1	1696793	.	G	.	.	LowGQX	END=1696800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1696801	.	A	.	.	LowGQX	END=1696847	GT	./.
chr1	1718768	.	C	.	.	LowGQX	END=1718878	GT	./.
chr1	1720490	.	A	.	.	LowGQX	END=1720710	GT	./.
chr1	1721832	.	A	.	.	LowGQX	END=1722037	GT	./.
chr1	1724668	.	C	.	.	LowGQX	END=1724767	GT	./.
chr1	1735827	.	T	.	.	LowGQX	END=1735836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1735837	.	C	.	.	LowGQX	END=1735839	GT	./.
chr1	1735840	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1735841	.	T	.	.	LowGQX	END=1735843	GT	./.
chr1	1735844	.	A	.	.	LowGQX	END=1735846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1735847	.	A	.	.	LowGQX	END=1735848	GT	./.
chr1	1735849	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1735850	.	A	.	.	LowGQX	.	GT	./.
chr1	1735851	.	C	.	.	LowGQX	END=1735852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1735853	.	G	.	.	LowGQX	END=1735856	GT	./.
chr1	1735857	.	C	.	.	LowGQX	END=1735862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1735863	.	T	.	32.98	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3:60:3
chr1	1735864	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	1735865	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	1735866	.	C	.	.	LowGQX	END=1735893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1735894	.	T	.	.	LowGQX	.	GT	./.
chr1	1735895	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	1735896	.	C	.	.	LowGQX	END=1735897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	1735898	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	1735899	.	T	.	.	LowGQX	END=1735927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	1735928	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	1735929	.	A	.	.	LowGQX	END=1735995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1735996	.	A	.	.	LowGQX	.	GT	./.
chr1	1735997	.	G	.	.	LowGQX	END=1736005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1736006	.	A	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	1736007	.	G	.	.	LowGQX	END=1736022	GT	./.
chr1	1737896	.	G	.	.	LowGQX	END=1737995	GT	./.
chr1	1747193	.	A	.	.	LowGQX	END=1747303	GT	./.
chr1	1749246	.	A	.	.	LowGQX	END=1749345	GT	./.
chr1	1756815	.	C	.	.	LowGQX	END=1756914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1846684	.	G	.	.	LowGQX	END=1846688	GT	./.
chr1	1846689	.	G	.	.	LowGQX	END=1846747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1846748	.	T	.	.	LowGQX	.	GT	./.
chr1	1846749	.	A	.	.	LowGQX	END=1846777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1846778	.	A	.	.	LowGQX	.	GT	./.
chr1	1846779	.	T	.	.	LowGQX	END=1846783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1847100	.	A	.	.	LowGQX	END=1847199	GT	./.
chr1	1847878	.	A	.	.	LowGQX	END=1847882	GT	./.
chr1	1847883	.	G	.	.	LowGQX	END=1848056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1848189	.	A	.	.	LowGQX	END=1848337	GT	./.
chr1	1848411	.	A	.	.	LowGQX	END=1848515	GT	./.
chr1	1848560	.	C	.	.	LowGQX	END=1848659	GT	./.
chr1	1849319	.	C	.	.	LowGQX	END=1849603	GT	./.
chr1	1849690	.	A	.	.	LowGQX	END=1849995	GT	./.
chr1	1850243	.	C	.	.	LowGQX	END=1850402	GT	./.
chr1	1850411	.	G	.	.	LowGQX	END=1850706	GT	./.
chr1	1850707	.	T	.	.	LowGQX	END=1850758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1850759	.	A	.	.	LowGQX	.	GT	./.
chr1	1850760	.	C	.	.	LowGQX	END=1850761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1850762	.	A	.	.	LowGQX	.	GT	./.
chr1	1850763	.	C	.	.	LowGQX	END=1850766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1850767	.	A	.	.	LowGQX	.	GT	./.
chr1	1850768	.	C	.	.	LowGQX	END=1850770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1853673	.	G	.	.	LowGQX	END=1853683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1853684	.	T	.	.	LowGQX	.	GT	./.
chr1	1853685	.	G	.	.	LowGQX	END=1853689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1853690	.	T	.	.	LowGQX	.	GT	./.
chr1	1853691	.	G	.	.	LowGQX	END=1853724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1853725	.	C	.	.	LowGQX	END=1853883	GT	./.
chr1	1854026	.	A	.	.	LowGQX	END=1854164	GT	./.
chr1	1854422	.	A	.	.	LowGQX	END=1854611	GT	./.
chr1	1854804	.	A	.	.	LowGQX	END=1854940	GT	./.
chr1	1855191	.	A	.	.	LowGQX	END=1855238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1855239	.	T	.	.	LowGQX	END=1855370	GT	./.
chr1	1855828	.	A	.	.	LowGQX	END=1855961	GT	./.
chr1	1857220	.	A	.	.	LowGQX	END=1857222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1857223	.	T	.	.	LowGQX	.	GT	./.
chr1	1857224	.	T	.	.	LowGQX	END=1857256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1857257	.	C	.	.	LowGQX	.	GT	./.
chr1	1857258	.	A	.	.	LowGQX	END=1857324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1857325	.	A	.	.	LowGQX	END=1857377	GT	./.
chr1	1857667	.	C	.	.	LowGQX	END=1857703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1857704	.	A	.	.	LowGQX	.	GT	./.
chr1	1857705	.	C	.	.	LowGQX	END=1857706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1857707	.	T	.	.	LowGQX	.	GT	./.
chr1	1857708	.	G	.	.	LowGQX	END=1857725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1857726	.	G	.	.	LowGQX	.	GT	./.
chr1	1857727	.	C	.	.	LowGQX	END=1857731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1857732	.	T	.	.	LowGQX	END=1857735	GT	./.
chr1	1857736	.	G	.	.	LowGQX	END=1857738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1857739	.	G	.	.	LowGQX	.	GT	./.
chr1	1857740	.	T	.	.	LowGQX	END=1857745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1857746	.	A	.	.	LowGQX	END=1857748	GT	./.
chr1	1857749	.	A	.	.	LowGQX	END=1857752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1857753	.	A	.	.	LowGQX	.	GT	./.
chr1	1857754	.	G	.	.	LowGQX	END=1857779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1857780	.	A	.	.	LowGQX	END=1857786	GT	./.
chr1	1857874	.	T	.	.	LowGQX	END=1857973	GT	./.
chr1	1858091	.	C	.	.	LowGQX	END=1858096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1858097	.	C	.	.	LowGQX	.	GT	./.
chr1	1858098	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1858099	.	A	.	.	LowGQX	.	GT	./.
chr1	1858100	.	C	.	.	LowGQX	END=1858102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1858103	.	C	.	.	LowGQX	.	GT	./.
chr1	1858104	.	G	.	.	LowGQX	END=1858119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1858120	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1858121	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1858122	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1858123	.	T	.	.	LowGQX	END=1858124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1858125	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1858126	.	C	.	.	LowGQX	END=1858132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1858133	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1858134	.	G	.	.	LowGQX	END=1858142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1858143	.	C	.	.	LowGQX	.	GT	./.
chr1	1858144	.	A	.	.	LowGQX	END=1858158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1858159	.	A	.	.	LowGQX	END=1858160	GT	./.
chr1	1858161	.	C	.	.	LowGQX	END=1858163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1858164	.	C	.	.	LowGQX	.	GT	./.
chr1	1858165	.	G	.	.	LowGQX	END=1858175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1858176	.	C	.	.	LowGQX	.	GT	./.
chr1	1858177	.	T	.	.	LowGQX	END=1858178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1858179	.	C	.	.	LowGQX	END=1858180	GT	./.
chr1	1858181	.	G	.	.	LowGQX	END=1858187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1858188	.	G	.	.	LowGQX	.	GT	./.
chr1	1858189	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1858190	.	T	.	.	LowGQX	.	GT	./.
chr1	1858191	.	G	.	.	LowGQX	END=1858200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1858333	.	C	.	.	LowGQX	END=1858345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1858346	.	G	.	.	LowGQX	.	GT	./.
chr1	1858347	.	T	.	.	LowGQX	END=1858351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1858352	.	A	.	.	LowGQX	.	GT	./.
chr1	1858353	.	C	.	.	LowGQX	END=1858406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1858407	.	G	.	.	LowGQX	.	GT	./.
chr1	1858408	.	T	.	.	LowGQX	END=1858417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1858418	.	C	.	.	LowGQX	.	GT	./.
chr1	1858419	.	C	.	.	LowGQX	END=1858433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1858434	.	C	.	.	LowGQX	.	GT	./.
chr1	1858435	.	A	.	.	LowGQX	END=1858446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1858447	.	G	.	.	LowGQX	END=1858467	GT	./.
chr1	1859046	.	C	.	.	LowGQX	END=1859185	GT	./.
chr1	1860223	.	A	.	.	LowGQX	END=1860322	GT	./.
chr1	1861499	.	C	.	.	LowGQX	END=1861572	GT	./.
chr1	1861573	.	A	.	.	LowGQX	END=1861588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1861589	.	A	.	.	LowGQX	.	GT	./.
chr1	1861590	.	G	.	.	LowGQX	END=1861597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1861598	.	C	.	.	LowGQX	.	GT	./.
chr1	1861599	.	T	.	.	LowGQX	END=1861615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1861616	.	C	.	.	LowGQX	END=1861617	GT	./.
chr1	1861618	.	T	.	.	LowGQX	END=1861634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1861635	.	C	.	.	LowGQX	.	GT	./.
chr1	1861636	.	T	.	.	LowGQX	END=1861643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1861644	.	A	.	.	LowGQX	.	GT	./.
chr1	1861645	.	G	.	.	LowGQX	END=1861649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1861650	.	G	.	.	LowGQX	.	GT	./.
chr1	1861651	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1861652	.	G	.	.	LowGQX	.	GT	./.
chr1	1861653	.	T	.	.	LowGQX	END=1861656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1861657	.	T	.	.	LowGQX	.	GT	./.
chr1	1861658	.	G	.	.	LowGQX	END=1861773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1861774	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1861775	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1870294	.	C	.	.	LowGQX	END=1870427	GT	./.
chr1	1871033	.	C	.	.	LowGQX	END=1871096	GT	./.
chr1	1871097	.	G	.	.	LowGQX	END=1871147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1871148	.	C	.	.	LowGQX	.	GT	./.
chr1	1871149	.	T	.	.	LowGQX	END=1871150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1871151	.	A	.	.	LowGQX	.	GT	./.
chr1	1871152	.	G	.	.	LowGQX	END=1871163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1871164	.	A	.	.	LowGQX	.	GT	./.
chr1	1871165	.	G	.	.	LowGQX	END=1871171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1871172	.	A	.	.	LowGQX	.	GT	./.
chr1	1871173	.	C	.	.	LowGQX	END=1871183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1871184	.	A	.	.	LowGQX	.	GT	./.
chr1	1871185	.	C	.	.	LowGQX	END=1871190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1871191	.	A	.	.	LowGQX	END=1871192	GT	./.
chr1	1871193	.	C	.	.	LowGQX	END=1871206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1871689	.	G	.	.	LowGQX	END=1871848	GT	./.
chr1	1873467	.	C	.	.	LowGQX	END=1873595	GT	./.
chr1	1875770	.	C	.	.	LowGQX	END=1875891	GT	./.
chr1	1877756	.	C	.	.	LowGQX	END=1877878	GT	./.
chr1	1878412	.	G	.	.	LowGQX	END=1878437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1878438	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	1878439	.	G	.	.	LowGQX	END=1878494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1878495	.	T	.	.	LowGQX	.	GT	./.
chr1	1878496	.	G	.	.	LowGQX	END=1878498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1878499	.	A	.	.	LowGQX	.	GT	./.
chr1	1878500	.	G	.	.	LowGQX	END=1878511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1886576	.	G	.	.	LowGQX	END=1886613	GT	./.
chr1	1886614	.	G	.	.	LowGQX	END=1886673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1886674	.	C	.	.	LowGQX	.	GT	./.
chr1	1886675	.	A	.	.	LowGQX	END=1886705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1886706	.	C	.	.	LowGQX	.	GT	./.
chr1	1886707	.	A	.	.	LowGQX	END=1886784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1886785	.	T	.	.	LowGQX	.	GT	./.
chr1	1886786	.	G	.	.	LowGQX	END=1886858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1886859	.	C	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	1886860	.	G	.	.	LowGQX	END=1886862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1886863	.	T	.	.	LowGQX	END=1886965	GT	./.
chr1	1887015	.	G	.	.	LowGQX	END=1887024	GT	./.
chr1	1887025	.	A	.	.	LowGQX	END=1887099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1887100	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1887101	.	C	.	.	LowGQX	END=1887155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1887156	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1887157	.	T	.	.	LowGQX	END=1887171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1887172	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	1887173	.	C	.	.	LowGQX	END=1887193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1887194	.	C	.	.	LowGQX	END=1887291	GT	./.
chr1	1888057	.	A	.	.	LowGQX	END=1888115	GT	./.
chr1	1888116	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1888117	.	T	.	.	LowGQX	.	GT	./.
chr1	1888118	.	T	.	.	LowGQX	END=1888127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1888128	.	G	.	.	LowGQX	END=1888129	GT	./.
chr1	1888130	.	C	.	.	LowGQX	END=1888136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1888137	.	C	.	.	LowGQX	END=1888138	GT	./.
chr1	1888139	.	C	.	.	LowGQX	END=1888141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1888142	.	C	.	.	LowGQX	END=1888143	GT	./.
chr1	1888144	.	T	.	.	LowGQX	END=1888150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1888151	.	G	.	.	LowGQX	.	GT	./.
chr1	1888152	.	C	.	.	LowGQX	END=1888153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1888154	.	T	.	.	LowGQX	.	GT	./.
chr1	1888155	.	G	.	.	LowGQX	END=1888158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1888159	.	G	.	.	LowGQX	.	GT	./.
chr1	1888160	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1888161	.	C	.	.	LowGQX	.	GT	./.
chr1	1888162	.	C	.	.	LowGQX	END=1888165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1888166	.	A	.	.	LowGQX	.	GT	./.
chr1	1888167	.	C	.	.	LowGQX	END=1888170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1888171	.	G	.	.	LowGQX	.	GT	./.
chr1	1888172	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1888173	.	C	.	.	LowGQX	.	GT	./.
chr1	1888174	.	T	.	.	LowGQX	END=1888182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1888183	.	A	.	.	LowGQX	.	GT	./.
chr1	1888184	.	C	.	.	LowGQX	END=1888192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1888193	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	1888194	.	G	.	.	LowGQX	END=1888203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1888204	.	A	.	.	LowGQX	.	GT	./.
chr1	1888205	.	G	.	.	LowGQX	END=1888213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1888214	.	C	.	.	LowGQX	.	GT	./.
chr1	1888215	.	G	.	.	LowGQX	END=1888219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1888220	.	A	.	.	LowGQX	.	GT	./.
chr1	1888221	.	C	.	.	LowGQX	END=1888222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1888223	.	G	.	.	LowGQX	.	GT	./.
chr1	1888224	.	C	.	.	LowGQX	END=1888225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1890554	.	C	.	.	LowGQX	END=1890653	GT	./.
chr1	1891370	.	C	.	.	LowGQX	END=1891580	GT	./.
chr1	1895186	.	A	.	.	LowGQX	END=1895352	GT	./.
chr1	1895353	.	G	.	.	LowGQX	END=1895355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1896305	.	C	.	.	LowGQX	END=1896310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1896311	.	C	.	.	LowGQX	END=1896502	GT	./.
chr1	1897808	.	A	.	.	LowGQX	END=1897967	GT	./.
chr1	1900072	.	A	.	.	LowGQX	END=1900274	GT	./.
chr1	1902096	.	A	.	.	LowGQX	END=1902214	GT	./.
chr1	1902215	.	G	.	.	LowGQX	END=1902248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1902249	.	G	.	.	LowGQX	.	GT	./.
chr1	1902250	.	T	.	.	LowGQX	END=1902257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1903417	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1903418	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	1903419	.	C	.	.	LowGQX	END=1903429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1903430	.	A	.	.	LowGQX	.	GT	./.
chr1	1903431	.	G	.	.	LowGQX	END=1903436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1903437	.	G	.	.	LowGQX	.	GT	./.
chr1	1903438	.	C	.	.	LowGQX	END=1903456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1903457	.	C	.	.	LowGQX	.	GT	./.
chr1	1903458	.	A	.	.	LowGQX	END=1903464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1903465	.	C	.	.	LowGQX	.	GT	./.
chr1	1903466	.	G	.	.	LowGQX	END=1903468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1903469	.	G	.	.	LowGQX	.	GT	./.
chr1	1903470	.	C	.	.	LowGQX	END=1903480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1903481	.	C	.	.	LowGQX	.	GT	./.
chr1	1903482	.	G	.	.	LowGQX	END=1903494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1903495	.	T	.	.	LowGQX	END=1903496	GT	./.
chr1	1903497	.	C	.	.	LowGQX	END=1903503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1903504	.	T	.	.	LowGQX	.	GT	./.
chr1	1903505	.	T	.	.	LowGQX	END=1903519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1903520	.	T	.	.	LowGQX	.	GT	./.
chr1	1903521	.	T	.	.	LowGQX	END=1903523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1904324	.	A	.	.	LowGQX	END=1904488	GT	./.
chr1	1905462	.	A	.	.	LowGQX	END=1905639	GT	./.
chr1	1916821	.	T	.	.	LowGQX	END=1916931	GT	./.
chr1	1918374	.	A	.	.	LowGQX	END=1918384	GT	./.
chr1	1918385	.	G	.	.	LowGQX	END=1918405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1918406	.	T	.	.	LowGQX	.	GT	./.
chr1	1918407	.	C	.	.	LowGQX	END=1918433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1918434	.	C	.	.	LowGQX	.	GT	./.
chr1	1918435	.	G	.	.	LowGQX	END=1918476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1919518	.	G	.	.	LowGQX	END=1919570	GT	./.
chr1	1919571	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1919572	.	G	.	.	LowGQX	.	GT	./.
chr1	1919573	.	C	.	.	LowGQX	END=1919591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1919592	.	C	.	.	LowGQX	.	GT	./.
chr1	1919593	.	G	.	.	LowGQX	END=1919599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1919600	.	G	.	.	LowGQX	.	GT	./.
chr1	1919601	.	T	.	.	LowGQX	END=1919602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1919603	.	T	.	.	LowGQX	END=1919604	GT	./.
chr1	1919605	.	T	.	.	LowGQX	END=1919617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1919949	.	A	.	.	LowGQX	END=1920012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1920013	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	1920014	.	C	.	.	LowGQX	END=1920023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1920024	.	A	.	.	LowGQX	.	GT	./.
chr1	1920025	.	T	.	.	LowGQX	END=1920027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1920028	.	C	.	.	LowGQX	.	GT	./.
chr1	1920029	.	T	.	.	LowGQX	END=1920038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1920039	.	C	.	.	LowGQX	.	GT	./.
chr1	1920040	.	C	.	.	LowGQX	END=1920047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1920048	.	T	.	.	LowGQX	.	GT	./.
chr1	1920049	.	T	.	.	LowGQX	END=1920063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1920064	.	A	.	.	LowGQX	.	GT	./.
chr1	1920065	.	T	.	.	LowGQX	END=1920068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1920069	.	C	.	.	LowGQX	END=1920096	GT	./.
chr1	1920266	.	C	.	.	LowGQX	END=1920420	GT	./.
chr1	1922313	.	A	.	.	LowGQX	END=1922314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1922315	.	A	.	.	LowGQX	.	GT	./.
chr1	1922316	.	G	.	.	LowGQX	END=1922355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1922356	.	A	.	.	LowGQX	.	GT	./.
chr1	1922357	.	A	.	.	LowGQX	END=1922364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1922365	.	C	.	.	LowGQX	.	GT	./.
chr1	1922366	.	C	.	.	LowGQX	END=1922371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1922372	.	G	.	.	LowGQX	.	GT	./.
chr1	1922373	.	A	.	.	LowGQX	END=1922390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1922391	.	T	.	.	LowGQX	.	GT	./.
chr1	1922392	.	C	.	.	LowGQX	END=1922403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1922404	.	A	.	.	LowGQX	.	GT	./.
chr1	1922405	.	T	.	.	LowGQX	END=1922411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1922412	.	T	.	.	LowGQX	.	GT	./.
chr1	1950787	.	T	.	.	LowGQX	END=1950924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	1950925	.	C	.	.	LowGQX	END=1950946	GT	./.
chr1	1956379	.	A	.	.	PASS	END=1956488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:276:99:60
chr1	1956489	.	C	.	.	PASS	END=1956495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr1	1956757	.	T	.	.	PASS	END=1956803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	1956804	.	G	.	.	PASS	END=1956856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	1956955	.	A	.	.	PASS	END=1957023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	1957024	.	A	.	.	PASS	END=1957036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	1957037	.	T	C	5786.61	PASS	DP=207;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=18.0970;MQ=60;MQ0=0;QD=27.95;SB=-3475.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,205:207:99:5787,430,0:60:99:1.000
chr1	1957038	.	C	.	.	PASS	END=1957099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	1957100	.	G	.	.	PASS	END=1957135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	1957136	.	C	.	.	PASS	END=1957164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	1957165	.	T	.	.	PASS	END=1957171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	1957172	.	C	.	.	PASS	END=1957179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:84:60
chr1	1958953	.	T	.	.	PASS	END=1959027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	1959028	.	T	.	.	PASS	END=1959047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	1959048	.	T	.	.	PASS	END=1959082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	1959083	.	C	.	.	PASS	END=1959107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	1959592	.	A	.	.	PASS	END=1959625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	1959626	.	T	.	.	PASS	END=1959654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	1959655	.	G	.	.	PASS	END=1959687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	1959688	.	C	.	.	PASS	END=1959719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	1959720	.	A	.	.	PASS	END=1959733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:78:60
chr1	1960518	.	G	.	.	PASS	END=1960556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	1960557	.	G	.	.	PASS	END=1960611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	1960612	.	A	.	.	PASS	END=1960645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	1960646	.	C	.	.	PASS	END=1960669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	1960670	.	T	.	.	PASS	END=1960707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	1960988	.	A	.	.	PASS	END=1960990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	1960991	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:75:60
chr1	1960992	.	A	.	.	PASS	END=1961005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	1961006	.	G	.	.	PASS	END=1961018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	1961019	.	C	.	.	PASS	END=1961039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	1961040	.	T	.	.	PASS	END=1961072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	1961073	.	G	.	.	PASS	END=1961123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	1961124	.	T	.	.	PASS	END=1961189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	1961190	.	C	.	.	PASS	END=1961203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	1961409	.	G	.	.	PASS	END=1961535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	1961536	.	A	.	.	PASS	END=1961598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	1961599	.	G	.	.	PASS	END=1961688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	1961689	.	A	.	.	PASS	END=1961715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	1961716	.	A	.	.	PASS	END=1961728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	1981996	.	A	.	.	LowGQX	END=1982155	GT	./.
chr1	1986878	.	A	.	.	LowGQX	END=1986993	GT	./.
chr1	1986994	.	C	.	.	LowGQX	END=1987003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1987918	.	C	.	.	LowGQX	END=1988017	GT	./.
chr1	1990956	.	T	.	.	LowGQX	END=1990958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1990959	.	C	.	.	LowGQX	END=1990960	GT	./.
chr1	1990961	.	C	.	.	LowGQX	END=1990973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1990974	.	G	.	.	LowGQX	.	GT	./.
chr1	1990975	.	T	.	.	LowGQX	END=1990989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1990990	.	C	.	.	LowGQX	END=1990991	GT	./.
chr1	1990992	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	1990993	.	C	.	.	LowGQX	END=1991055	GT	./.
chr1	2002719	.	T	.	.	LowGQX	END=2002818	GT	./.
chr1	2005654	.	G	.	.	LowGQX	END=2005753	GT	./.
chr1	2013760	.	A	.	.	LowGQX	END=2013899	GT	./.
chr1	2066694	.	T	.	.	LowGQX	END=2066793	GT	./.
chr1	2075647	.	A	.	.	LowGQX	END=2075686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2075687	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	2075688	.	C	.	.	LowGQX	END=2075718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	2075719	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	2075720	.	C	.	.	LowGQX	END=2075735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	2075736	.	A	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	2075737	.	A	.	.	LowGQX	END=2075782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2077457	.	C	.	.	LowGQX	END=2077556	GT	./.
chr1	2080288	.	T	.	.	LowGQX	END=2080387	GT	./.
chr1	2082227	.	A	.	.	LowGQX	END=2082419	GT	./.
chr1	2087432	.	A	.	.	LowGQX	END=2087535	GT	./.
chr1	2100439	.	A	.	.	LowGQX	END=2100551	GT	./.
chr1	2100552	.	C	.	.	LowGQX	END=2100717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2100718	.	A	.	.	LowGQX	END=2101045	GT	./.
chr1	2103492	.	A	.	.	LowGQX	END=2103631	GT	./.
chr1	2103674	.	C	.	.	LowGQX	END=2103833	GT	./.
chr1	2105334	.	A	.	.	LowGQX	END=2105457	GT	./.
chr1	2106183	.	G	.	.	LowGQX	END=2106217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2106218	.	C	.	.	LowGQX	.	GT	./.
chr1	2106219	.	C	.	.	LowGQX	END=2106245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2106246	.	C	.	.	LowGQX	.	GT	./.
chr1	2106247	.	A	.	.	LowGQX	END=2106282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2106658	.	T	.	.	LowGQX	END=2106757	GT	./.
chr1	2113235	.	T	.	.	LowGQX	END=2113265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2113266	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	2113267	.	G	.	.	LowGQX	END=2113334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2116020	.	A	.	.	LowGQX	END=2116049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2116050	.	T	.	.	LowGQX	.	GT	./.
chr1	2116051	.	C	.	.	LowGQX	END=2116077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2116078	.	T	.	.	LowGQX	.	GT	./.
chr1	2116079	.	C	.	.	LowGQX	END=2116092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2116093	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	2116094	.	A	.	.	LowGQX	END=2116107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2116108	.	C	.	.	LowGQX	END=2116139	GT	./.
chr1	2116355	.	C	.	.	LowGQX	END=2116454	GT	./.
chr1	2116716	.	G	.	.	LowGQX	END=2116749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2116750	.	A	.	.	LowGQX	END=2116755	GT	./.
chr1	2116756	.	A	.	.	LowGQX	END=2116788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2116789	.	T	.	.	LowGQX	.	GT	./.
chr1	2116790	.	G	.	.	LowGQX	END=2116904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2116905	.	G	.	.	LowGQX	END=2116952	GT	./.
chr1	2117442	.	C	.	.	LowGQX	END=2117650	GT	./.
chr1	2118573	.	G	.	.	LowGQX	END=2118591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2118592	.	G	.	.	LowGQX	END=2118672	GT	./.
chr1	2121135	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2121136	.	C	.	.	LowGQX	.	GT	./.
chr1	2121137	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2121138	.	T	.	.	LowGQX	.	GT	./.
chr1	2121139	.	G	.	.	LowGQX	END=2121144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2121145	.	C	.	.	LowGQX	.	GT	./.
chr1	2121146	.	G	.	.	LowGQX	END=2121150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2121151	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	2121152	.	C	.	.	LowGQX	END=2121153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2121154	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	2121155	.	G	.	.	LowGQX	END=2121156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2121157	.	C	.	.	LowGQX	.	GT	./.
chr1	2121158	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2121159	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	2121160	.	G	.	.	LowGQX	.	GT	./.
chr1	2121161	.	T	.	.	LowGQX	END=2121165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2121166	.	T	.	.	LowGQX	END=2121167	GT	./.
chr1	2121168	.	T	.	.	LowGQX	END=2121185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2121186	.	G	.	.	LowGQX	.	GT	./.
chr1	2121187	.	G	.	.	LowGQX	END=2121189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2121190	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	2121191	.	A	.	.	LowGQX	END=2121197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2121198	.	T	.	.	LowGQX	.	GT	./.
chr1	2121199	.	G	.	.	LowGQX	END=2121203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2121204	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	2121205	.	A	.	.	LowGQX	END=2121209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2121210	.	G	T	7.08	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=3.54;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:36,3,0:60:3:1.000
chr1	2121211	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2121212	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	2121213	.	G	.	.	LowGQX	END=2121220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2121221	.	C	.	.	LowGQX	.	GT	./.
chr1	2121222	.	T	.	.	LowGQX	END=2121230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2121231	.	G	.	.	LowGQX	END=2121232	GT	./.
chr1	2121233	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2121234	.	G	.	.	LowGQX	.	GT	./.
chr1	2121490	.	A	.	.	LowGQX	END=2122032	GT	./.
chr1	2124296	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2124297	.	T	.	.	LowGQX	END=2124298	GT	./.
chr1	2124299	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2124300	.	A	.	.	LowGQX	END=2124302	GT	./.
chr1	2124303	.	G	.	.	LowGQX	END=2124307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2124308	.	G	.	.	LowGQX	.	GT	./.
chr1	2124309	.	G	.	.	LowGQX	END=2124315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2124316	.	G	.	.	LowGQX	END=2124414	GT	./.
chr1	2125006	.	T	.	.	LowGQX	END=2125262	GT	./.
chr1	2125263	.	C	.	.	LowGQX	END=2125355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2125435	.	A	.	.	LowGQX	END=2125447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2125448	.	A	.	.	LowGQX	END=2125574	GT	./.
chr1	2126048	.	G	.	.	LowGQX	END=2126207	GT	./.
chr1	2129445	.	C	.	.	LowGQX	END=2129500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2129501	.	A	.	.	LowGQX	END=2129581	GT	./.
chr1	2130192	.	C	.	.	LowGQX	END=2130197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2130198	.	G	.	.	LowGQX	.	GT	./.
chr1	2130199	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2130200	.	C	.	.	LowGQX	.	GT	./.
chr1	2130201	.	A	.	.	LowGQX	END=2130207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2130208	.	G	.	.	LowGQX	END=2130209	GT	./.
chr1	2130210	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2130211	.	A	.	.	LowGQX	.	GT	./.
chr1	2130212	.	A	.	.	LowGQX	END=2130214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2130215	.	G	.	.	LowGQX	.	GT	./.
chr1	2130216	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2130217	.	C	.	.	LowGQX	.	GT	./.
chr1	2130218	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2130219	.	C	.	.	LowGQX	.	GT	./.
chr1	2130220	.	G	.	.	LowGQX	END=2130221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2130222	.	G	.	.	LowGQX	.	GT	./.
chr1	2130223	.	C	.	.	LowGQX	END=2130227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2130228	.	T	.	.	LowGQX	.	GT	./.
chr1	2130229	.	T	.	.	LowGQX	END=2130234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2130235	.	G	.	.	LowGQX	END=2130236	GT	./.
chr1	2130237	.	A	.	.	LowGQX	END=2130253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2130254	.	T	.	.	LowGQX	.	GT	./.
chr1	2130255	.	G	.	.	LowGQX	END=2130256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2130257	.	T	.	.	LowGQX	.	GT	./.
chr1	2130258	.	C	.	.	LowGQX	END=2130262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2130263	.	A	.	.	LowGQX	.	GT	./.
chr1	2130264	.	C	.	.	LowGQX	END=2130266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2130267	.	C	.	.	LowGQX	.	GT	./.
chr1	2130268	.	T	.	.	LowGQX	END=2130278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2130279	.	G	.	.	LowGQX	END=2130280	GT	./.
chr1	2130281	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2130282	.	T	.	.	LowGQX	.	GT	./.
chr1	2130283	.	G	.	.	LowGQX	END=2130286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2130287	.	G	.	.	LowGQX	.	GT	./.
chr1	2130288	.	G	.	.	LowGQX	END=2130294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2130295	.	C	.	.	LowGQX	.	GT	./.
chr1	2130296	.	G	.	.	LowGQX	END=2130309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2130310	.	A	.	.	LowGQX	END=2130427	GT	./.
chr1	2132463	.	C	.	.	LowGQX	END=2132470	GT	./.
chr1	2132471	.	T	.	.	LowGQX	END=2132500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2132501	.	G	.	.	LowGQX	.	GT	./.
chr1	2132502	.	G	.	.	LowGQX	END=2132517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2132518	.	G	.	.	LowGQX	.	GT	./.
chr1	2132519	.	G	.	.	LowGQX	END=2132562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2144365	.	C	.	.	LowGQX	END=2145019	GT	./.
chr1	2160155	.	G	.	.	LowGQX	END=2160157	GT	./.
chr1	2160158	.	G	.	.	LowGQX	END=2160190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2160191	.	G	.	.	LowGQX	END=2160338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	2160339	.	A	.	.	LowGQX	END=2160350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2160351	.	A	.	.	LowGQX	.	GT	./.
chr1	2160352	.	G	.	.	LowGQX	END=2160355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2160356	.	A	.	.	LowGQX	.	GT	./.
chr1	2160357	.	G	.	.	LowGQX	END=2160382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2160383	.	G	.	.	LowGQX	END=2160391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	2160392	.	C	.	.	LowGQX	END=2160393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	2160394	.	G	.	.	LowGQX	END=2160396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	2160397	.	G	.	.	PASS	END=2160401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	2160402	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:42:60
chr1	2160403	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	2160404	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:42:60
chr1	2160405	.	C	.	.	PASS	END=2160415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	2160416	.	C	.	.	PASS	END=2160421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	2160422	.	G	.	.	PASS	END=2160424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	2160425	.	C	.	.	PASS	END=2160452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	2160453	.	C	.	.	PASS	END=2160467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	2160468	.	G	.	.	PASS	END=2160477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	2160478	.	C	.	.	PASS	END=2160495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	2160496	.	C	.	.	PASS	END=2160514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	2160515	.	G	.	.	PASS	END=2160652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:257:99:60
chr1	2160653	.	T	.	.	PASS	END=2160677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	2160678	.	T	.	.	PASS	END=2160726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	2160727	.	C	.	.	PASS	END=2160793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	2160794	.	C	.	.	PASS	END=2160885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	2160886	.	G	.	.	PASS	END=2160943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	2160944	.	T	.	.	PASS	END=2161023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	2161024	.	C	.	.	PASS	END=2161094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	2161095	.	A	.	.	PASS	END=2161190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	2161191	.	C	.	.	PASS	END=2161208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	2161209	.	G	.	.	PASS	END=2161218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	2161219	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:75:60
chr1	2161220	.	G	.	.	PASS	END=2161225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	2234366	.	G	.	.	PASS	END=2234403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	2234404	.	T	.	.	PASS	END=2234420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	2234421	.	C	.	.	PASS	END=2234450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	2234451	.	A	.	.	PASS	END=2234565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	2234566	.	C	.	.	PASS	END=2234593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	2234673	.	A	.	.	PASS	END=2234794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	2234795	.	T	.	.	PASS	END=2234842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	2234843	.	A	.	.	PASS	END=2234889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	2234890	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:99:60
chr1	2235228	.	G	.	.	PASS	END=2235234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	2235235	.	C	.	.	PASS	END=2235245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	2235246	.	A	.	.	PASS	END=2235247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	2235248	.	G	.	.	PASS	END=2235249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	2235250	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:51:60
chr1	2235251	.	C	.	.	PASS	END=2235258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	2235259	.	A	.	.	PASS	END=2235260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	2235261	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:51:60
chr1	2235262	.	C	.	.	PASS	END=2235278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	2235279	.	C	.	.	PASS	END=2235288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	2235289	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:62:60
chr1	2235290	.	A	.	.	PASS	END=2235296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	2235297	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:42:60
chr1	2235298	.	T	.	.	PASS	END=2235303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	2235304	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr1	2235305	.	C	.	.	PASS	END=2235315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	2235316	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:63:60
chr1	2235317	.	C	.	.	PASS	END=2235344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	2235345	.	G	.	.	PASS	END=2235415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	2235416	.	C	.	.	PASS	END=2235477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	2235478	.	G	.	.	PASS	END=2235503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	2235504	.	C	.	.	PASS	END=2235564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:83:60
chr1	2235565	.	C	.	.	PASS	END=2235588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	2235589	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:69:60
chr1	2235590	.	G	.	.	PASS	END=2235592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	2235681	.	G	.	.	PASS	END=2235758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	2235759	.	C	.	.	PASS	END=2235840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	2235841	.	T	.	.	PASS	END=2235964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	2235965	.	C	.	.	PASS	END=2236003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:93:60
chr1	2236004	.	G	.	.	PASS	END=2236025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	2236026	.	T	.	.	PASS	END=2236041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	2236042	.	T	.	.	PASS	END=2236049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	2236050	.	G	.	.	PASS	END=2236051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	2236052	.	T	.	.	PASS	END=2236054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	2236055	.	A	.	.	PASS	END=2236075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	2237408	.	G	.	.	PASS	END=2237427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	2237428	.	G	.	.	PASS	END=2237468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	2237469	.	T	.	.	PASS	END=2237502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	2237503	.	G	.	.	PASS	END=2237619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	2237620	.	G	.	.	PASS	END=2237638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	2237639	.	T	.	.	PASS	END=2237665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	2237666	.	C	.	.	PASS	END=2237692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	2237693	.	T	.	.	PASS	END=2237722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	2237723	.	G	.	.	PASS	END=2237724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:90:60
chr1	2237725	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:48:60
chr1	2237726	.	G	.	.	PASS	END=2237733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	2237734	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:53:60
chr1	2237735	.	G	.	.	PASS	END=2237740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:69:60
chr1	2237965	.	G	.	.	PASS	END=2237973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	2237974	.	G	.	.	PASS	END=2238063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:78:60
chr1	2238064	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:76:60
chr1	2238065	.	A	.	.	PASS	END=2238149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:87:60
chr1	2238150	.	G	.	.	PASS	END=2238161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	2238162	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:57:60
chr1	2238163	.	G	.	.	PASS	END=2238166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	2238167	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:49:60
chr1	2238168	.	T	.	.	PASS	END=2238210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	2238211	.	T	.	.	PASS	END=2238228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	2238229	.	C	.	.	PASS	END=2238247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	2238248	.	G	.	.	PASS	END=2238253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	2238254	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:3:60
chr1	2238255	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:42:60
chr1	2252809	.	T	.	.	LowGQX	END=2253028	GT	./.
chr1	2255510	.	G	.	.	LowGQX	END=2255512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2255513	.	G	.	.	LowGQX	END=2255583	GT	./.
chr1	2255584	.	T	.	.	LowGQX	END=2255601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2255602	.	A	.	.	LowGQX	.	GT	./.
chr1	2255603	.	G	.	.	LowGQX	END=2255609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2263979	.	C	.	.	LowGQX	END=2264192	GT	./.
chr1	2267898	.	C	.	.	LowGQX	END=2267970	GT	./.
chr1	2267971	.	G	.	.	LowGQX	END=2267997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2268154	.	A	.	.	LowGQX	END=2268190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2268191	.	A	.	.	LowGQX	.	GT	./.
chr1	2268192	.	C	.	.	LowGQX	END=2268194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2268195	.	A	.	.	LowGQX	.	GT	./.
chr1	2268196	.	G	.	.	LowGQX	END=2268212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2268213	.	G	.	.	LowGQX	.	GT	./.
chr1	2268214	.	A	.	.	LowGQX	END=2268216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2268217	.	A	.	.	LowGQX	.	GT	./.
chr1	2268218	.	C	.	.	LowGQX	END=2268233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2268234	.	A	.	.	LowGQX	.	GT	./.
chr1	2268235	.	C	.	.	LowGQX	END=2268268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2268269	.	A	.	.	LowGQX	.	GT	./.
chr1	2268270	.	A	.	.	LowGQX	END=2268273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2268274	.	G	.	.	LowGQX	.	GT	./.
chr1	2268275	.	G	.	.	LowGQX	END=2268291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2286845	.	G	.	.	LowGQX	END=2286944	GT	./.
chr1	2288869	.	A	.	.	LowGQX	END=2289039	GT	./.
chr1	2290029	.	A	.	.	LowGQX	END=2290156	GT	./.
chr1	2303193	.	A	.	.	LowGQX	END=2303215	GT	./.
chr1	2303216	.	G	.	.	LowGQX	END=2303290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2303291	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	2303292	.	A	.	.	LowGQX	END=2303326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	2303327	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	2303328	.	C	.	.	LowGQX	END=2303330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	2303331	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	2303332	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	2303333	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	2303334	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	2303335	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:4:6.02:60:6
chr1	2303336	.	A	.	.	LowGQX	END=2303344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	2303918	.	A	.	.	LowGQX	END=2303924	GT	./.
chr1	2303925	.	G	.	.	LowGQX	END=2303958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2303959	.	T	.	.	LowGQX	.	GT	./.
chr1	2303960	.	C	.	.	LowGQX	END=2304032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2305898	.	A	.	.	LowGQX	END=2305998	GT	./.
chr1	2310360	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310361	.	G	.	.	LowGQX	.	GT	./.
chr1	2310362	.	T	.	.	LowGQX	END=2310363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310364	.	G	.	.	LowGQX	END=2310366	GT	./.
chr1	2310367	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	2310368	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310369	.	G	.	.	LowGQX	.	GT	./.
chr1	2310370	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310371	.	A	.	.	LowGQX	END=2310373	GT	./.
chr1	2310374	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310375	.	T	.	.	LowGQX	END=2310376	GT	./.
chr1	2310377	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310378	.	T	.	.	LowGQX	.	GT	./.
chr1	2310379	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310380	.	T	.	.	LowGQX	END=2310382	GT	./.
chr1	2310383	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310384	.	T	.	.	LowGQX	END=2310385	GT	./.
chr1	2310386	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310387	.	G	.	.	LowGQX	.	GT	./.
chr1	2310388	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310389	.	A	.	.	LowGQX	END=2310391	GT	./.
chr1	2310392	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310393	.	G	.	.	LowGQX	.	GT	./.
chr1	2310394	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310395	.	T	.	.	LowGQX	.	GT	./.
chr1	2310396	.	G	.	.	LowGQX	END=2310397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310398	.	T	.	.	LowGQX	END=2310400	GT	./.
chr1	2310401	.	T	.	.	LowGQX	END=2310403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310404	.	T	.	.	LowGQX	.	GT	./.
chr1	2310405	.	T	.	.	LowGQX	END=2310407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310408	.	C	.	.	LowGQX	END=2310410	GT	./.
chr1	2310411	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310412	.	A	.	.	LowGQX	END=2310413	GT	./.
chr1	2310414	.	A	.	.	LowGQX	END=2310416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310417	.	A	.	.	LowGQX	END=2310422	GT	./.
chr1	2310423	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310424	.	A	.	.	LowGQX	.	GT	./.
chr1	2310425	.	A	.	.	LowGQX	END=2310426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310427	.	A	.	.	LowGQX	.	GT	./.
chr1	2310428	.	C	.	.	LowGQX	END=2310430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310431	.	T	.	.	LowGQX	END=2310433	GT	./.
chr1	2310434	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310435	.	T	.	.	LowGQX	.	GT	./.
chr1	2310436	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2310437	.	T	.	.	LowGQX	END=2310459	GT	./.
chr1	2310501	.	A	.	.	LowGQX	END=2310666	GT	./.
chr1	2316415	.	A	.	.	LowGQX	END=2316544	GT	./.
chr1	2316545	.	G	.	.	LowGQX	END=2316560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2317242	.	T	.	.	LowGQX	END=2317252	GT	./.
chr1	2317253	.	G	.	.	LowGQX	END=2317291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2317292	.	A	.	.	LowGQX	.	GT	./.
chr1	2317293	.	G	.	.	LowGQX	END=2317306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2317307	.	G	.	.	LowGQX	.	GT	./.
chr1	2317308	.	T	.	.	LowGQX	END=2317325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2317326	.	A	.	.	LowGQX	.	GT	./.
chr1	2317327	.	A	.	.	LowGQX	END=2317331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2317332	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	2317333	.	T	.	.	LowGQX	END=2317341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2318856	.	A	.	.	LowGQX	END=2318970	GT	./.
chr1	2319676	.	A	.	.	LowGQX	END=2319778	GT	./.
chr1	2321350	.	C	.	.	LowGQX	END=2321449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2322834	.	C	.	.	LowGQX	END=2322984	GT	./.
chr1	2327221	.	A	.	.	LowGQX	END=2327320	GT	./.
chr1	2328553	.	A	.	.	LowGQX	END=2328590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2328591	.	A	.	.	LowGQX	.	GT	./.
chr1	2328592	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2328593	.	G	.	.	LowGQX	END=2328661	GT	./.
chr1	2330852	.	A	.	.	LowGQX	END=2330955	GT	./.
chr1	2332286	.	T	.	.	LowGQX	END=2332385	GT	./.
chr1	2333535	.	G	.	.	LowGQX	END=2333541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	2333542	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	2333543	.	T	.	.	LowGQX	END=2333559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	2333560	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	2333561	.	C	.	.	LowGQX	END=2333636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2333637	.	C	.	.	LowGQX	END=2333783	GT	./.
chr1	2334472	.	A	.	.	LowGQX	END=2334618	GT	./.
chr1	2337094	.	A	.	.	PASS	END=2337127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:91:60
chr1	2337128	.	G	.	.	PASS	END=2337162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	2337163	.	C	.	.	PASS	END=2337180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	2337181	.	G	.	.	PASS	END=2337274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	2337275	.	T	.	.	PASS	END=2337310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	2337311	.	C	.	.	PASS	END=2337324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	2337872	.	T	.	.	PASS	END=2337900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	2337901	.	C	.	.	PASS	END=2337926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	2337927	.	C	.	.	PASS	END=2338064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	2338065	.	A	.	.	PASS	END=2338125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	2338126	.	C	A	1529.00	PASS	BaseQRankSum=-1.406;DP=165;Dels=0.00;FS=13.931;HRun=1;HaplotypeScore=77.3154;MQ=60;MQ0=0;MQRankSum=-1.070;QD=9.27;ReadPosRankSum=1.285;SB=-714.96	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:88,77:165:99:1559,0,2185:60:99:0.467
chr1	2338127	.	C	.	.	PASS	END=2338130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	2338131	.	A	.	56.75	LowGQX	DP=159;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:123:159:26.76:60:27
chr1	2338132	.	G	.	.	PASS	END=2338155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	2338156	.	C	.	.	PASS	END=2338191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr1	2338192	.	T	.	.	PASS	END=2338218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:300:99:60
chr1	2338219	.	A	.	.	PASS	END=2338342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:373:99:60
chr1	2338343	.	C	.	.	PASS	END=2338367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:313:99:60
chr1	2338368	.	C	.	.	PASS	END=2338387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	2338388	.	G	.	.	PASS	END=2338408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	2338409	.	C	.	.	PASS	END=2338432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	2338433	.	A	.	.	PASS	END=2338445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	2339840	.	G	.	.	PASS	END=2339858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	2339859	.	A	.	.	PASS	END=2339882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	2339883	.	C	.	.	PASS	END=2339908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:249:99:60
chr1	2339909	.	C	.	.	PASS	END=2340125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:326:99:60
chr1	2340126	.	T	.	.	PASS	END=2340199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:362:99:60
chr1	2340200	.	T	C	10838.17	PASS	DP=354;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=25.7665;MQ=60;MQ0=0;QD=30.62;SB=-3915.16	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,353:354:99:10838,819,0:60:99:1.000
chr1	2340201	.	G	.	.	PASS	END=2340238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:271:99:60
chr1	2340239	.	T	.	.	PASS	END=2340258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	2340259	.	G	.	.	PASS	END=2340277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	2340278	.	C	.	.	PASS	END=2340323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	2340324	.	A	.	.	PASS	END=2340348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	2341759	.	A	.	.	PASS	END=2341767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	2341768	.	G	.	.	PASS	END=2341777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	2341778	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:54:60
chr1	2341779	.	C	.	.	PASS	END=2341799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	2341800	.	G	.	.	PASS	END=2341835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:87:60
chr1	2341836	.	G	.	.	PASS	END=2341866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	2341867	.	T	.	.	PASS	END=2341914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	2341915	.	C	.	.	PASS	END=2341941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	2342201	.	C	.	.	LowGQX	.	GT	./.
chr1	2342202	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2342203	.	G	.	.	LowGQX	.	GT	./.
chr1	2342204	.	G	.	.	LowGQX	END=2342213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2342214	.	A	.	.	LowGQX	.	GT	./.
chr1	2342215	.	A	.	.	LowGQX	END=2342216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2342217	.	T	.	.	LowGQX	.	GT	./.
chr1	2342218	.	G	.	.	LowGQX	END=2342223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2342224	.	C	.	.	LowGQX	.	GT	./.
chr1	2342225	.	A	.	.	LowGQX	END=2342237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2342238	.	T	.	5.78	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr1	2342239	.	C	.	.	LowGQX	END=2342307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2343779	.	C	.	.	PASS	END=2343838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	2343839	.	T	.	.	PASS	END=2343848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	2343849	.	G	.	.	PASS	END=2343872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	2343873	.	A	.	.	PASS	END=2343888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	2343889	.	T	.	.	PASS	END=2343906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	2343907	.	A	.	.	PASS	END=2343919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	2343920	.	G	.	.	PASS	END=2343956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	2343957	.	T	.	.	LowGQX	END=2343958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	2343959	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	2343960	.	T	.	.	LowGQX	END=2343962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:60
chr1	2343963	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	2343964	.	G	.	.	LowGQX	END=2343966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	2343967	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	2343968	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr1	2343969	.	G	.	.	LowGQX	END=2343973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	2343974	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	2343975	.	C	.	.	LowGQX	END=2343977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	2343978	.	G	.	.	LowGQX	END=2343980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	2343981	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:60
chr1	2343982	.	C	.	.	LowGQX	END=2343984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	2343985	.	C	.	.	LowGQX	END=2343991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	2343992	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	2398970	.	C	.	.	LowGQX	END=2399129	GT	./.
chr1	2408027	.	C	.	.	LowGQX	END=2408151	GT	./.
chr1	2409914	.	G	.	.	LowGQX	END=2410061	GT	./.
chr1	2411172	.	G	.	.	LowGQX	END=2411174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2411175	.	T	.	.	LowGQX	.	GT	./.
chr1	2411176	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2411177	.	C	.	.	LowGQX	.	GT	./.
chr1	2411178	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2411179	.	T	.	.	LowGQX	.	GT	./.
chr1	2411180	.	C	.	.	LowGQX	END=2411233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2411234	.	C	.	.	LowGQX	END=2411236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	2411237	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	2411238	.	G	.	.	LowGQX	END=2411255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2411256	.	A	.	.	LowGQX	.	GT	./.
chr1	2411257	.	A	.	.	LowGQX	END=2411293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2411294	.	G	.	.	LowGQX	.	GT	./.
chr1	2411295	.	T	.	.	LowGQX	END=2411301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2411302	.	A	.	.	LowGQX	.	GT	./.
chr1	2411303	.	C	.	.	LowGQX	END=2411306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2411307	.	G	.	.	LowGQX	.	GT	./.
chr1	2411308	.	T	.	.	LowGQX	END=2411417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2411620	.	A	.	.	LowGQX	END=2411675	GT	./.
chr1	2411676	.	C	.	.	LowGQX	END=2411702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2411703	.	C	.	.	LowGQX	.	GT	./.
chr1	2411704	.	A	.	.	LowGQX	END=2411751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2415886	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2415887	.	G	.	.	LowGQX	.	GT	./.
chr1	2415888	.	A	.	.	LowGQX	END=2415914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2415915	.	C	.	.	LowGQX	.	GT	./.
chr1	2415916	.	G	.	.	LowGQX	END=2415919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2415920	.	G	.	.	LowGQX	.	GT	./.
chr1	2415921	.	G	.	.	LowGQX	END=2415927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2415928	.	A	.	.	LowGQX	.	GT	./.
chr1	2415929	.	G	.	.	LowGQX	END=2415930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2415931	.	G	.	.	LowGQX	.	GT	./.
chr1	2415932	.	T	.	.	LowGQX	END=2415935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2415936	.	G	.	.	LowGQX	.	GT	./.
chr1	2415937	.	T	.	.	LowGQX	END=2415941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2415942	.	T	.	.	LowGQX	END=2415943	GT	./.
chr1	2415944	.	T	.	.	LowGQX	END=2415948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2415949	.	G	.	.	LowGQX	.	GT	./.
chr1	2415950	.	A	.	.	LowGQX	END=2415956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2415957	.	C	.	.	LowGQX	.	GT	./.
chr1	2415958	.	C	.	.	LowGQX	END=2415964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2415965	.	C	.	.	LowGQX	.	GT	./.
chr1	2415966	.	G	.	.	LowGQX	END=2415977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2415978	.	T	.	.	LowGQX	END=2415979	GT	./.
chr1	2415980	.	C	.	.	LowGQX	END=2415987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2415988	.	G	.	.	LowGQX	.	GT	./.
chr1	2415989	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2415990	.	C	.	.	LowGQX	.	GT	./.
chr1	2415991	.	C	.	.	LowGQX	END=2415998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2415999	.	A	.	.	LowGQX	END=2416001	GT	./.
chr1	2416002	.	A	.	.	LowGQX	END=2416008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2416009	.	C	.	.	LowGQX	END=2416016	GT	./.
chr1	2416017	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2416018	.	T	.	.	LowGQX	.	GT	./.
chr1	2416019	.	G	.	.	LowGQX	END=2416024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2416025	.	A	.	.	LowGQX	.	GT	./.
chr1	2416026	.	G	.	.	LowGQX	END=2416027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2416028	.	C	.	.	LowGQX	.	GT	./.
chr1	2416029	.	T	.	.	LowGQX	END=2416030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2416031	.	C	.	.	LowGQX	.	GT	./.
chr1	2416032	.	A	.	.	LowGQX	END=2416036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2416037	.	T	.	.	LowGQX	.	GT	./.
chr1	2416038	.	T	.	.	LowGQX	END=2416039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2416040	.	C	.	.	LowGQX	.	GT	./.
chr1	2416041	.	T	.	.	LowGQX	END=2416044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2416045	.	G	.	.	LowGQX	.	GT	./.
chr1	2416046	.	G	.	.	LowGQX	END=2416050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2416051	.	G	.	.	LowGQX	.	GT	./.
chr1	2416052	.	C	.	.	LowGQX	END=2416057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418343	.	T	.	.	LowGQX	END=2418353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418354	.	T	.	.	LowGQX	END=2418442	GT	./.
chr1	2418611	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418612	.	G	.	.	LowGQX	END=2418613	GT	./.
chr1	2418614	.	T	.	.	LowGQX	END=2418618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418619	.	C	.	.	LowGQX	.	GT	./.
chr1	2418620	.	A	.	.	LowGQX	END=2418630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418631	.	G	.	.	LowGQX	END=2418632	GT	./.
chr1	2418633	.	G	.	.	LowGQX	END=2418635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418636	.	C	.	.	LowGQX	.	GT	./.
chr1	2418637	.	T	.	.	LowGQX	END=2418640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418641	.	G	.	.	LowGQX	.	GT	./.
chr1	2418642	.	G	.	.	LowGQX	END=2418650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418651	.	T	.	.	LowGQX	.	GT	./.
chr1	2418652	.	C	.	.	LowGQX	END=2418659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418660	.	A	.	.	LowGQX	END=2418661	GT	./.
chr1	2418662	.	C	.	.	LowGQX	END=2418665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418666	.	A	.	.	LowGQX	.	GT	./.
chr1	2418667	.	C	.	.	LowGQX	END=2418683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418684	.	T	.	.	LowGQX	.	GT	./.
chr1	2418685	.	G	.	.	LowGQX	END=2418690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418691	.	G	.	.	LowGQX	.	GT	./.
chr1	2418692	.	C	.	.	LowGQX	END=2418697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418698	.	A	.	.	LowGQX	.	GT	./.
chr1	2418699	.	G	.	.	LowGQX	END=2418700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418701	.	C	.	.	LowGQX	.	GT	./.
chr1	2418702	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418703	.	C	.	.	LowGQX	END=2418705	GT	./.
chr1	2418706	.	C	.	.	LowGQX	END=2418712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418713	.	A	.	.	LowGQX	.	GT	./.
chr1	2418714	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418715	.	C	.	.	LowGQX	.	GT	./.
chr1	2418716	.	T	.	.	LowGQX	END=2418722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418723	.	A	.	.	LowGQX	.	GT	./.
chr1	2418724	.	C	.	.	LowGQX	END=2418727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418728	.	A	.	.	LowGQX	END=2418789	GT	./.
chr1	2418790	.	G	.	.	LowGQX	END=2418795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418796	.	T	.	.	LowGQX	.	GT	./.
chr1	2418797	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418798	.	G	.	.	LowGQX	.	GT	./.
chr1	2418799	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418800	.	T	.	.	LowGQX	.	GT	./.
chr1	2418801	.	G	.	.	LowGQX	END=2418802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418803	.	C	.	.	LowGQX	.	GT	./.
chr1	2418804	.	G	.	.	LowGQX	END=2418808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2418809	.	G	.	.	LowGQX	END=2418810	GT	./.
chr1	2418811	.	G	.	.	LowGQX	END=2418815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2419036	.	G	.	.	LowGQX	END=2419157	GT	./.
chr1	2420645	.	G	.	.	LowGQX	END=2420694	GT	./.
chr1	2420695	.	A	.	.	LowGQX	END=2420700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2420701	.	A	.	.	LowGQX	.	GT	./.
chr1	2420702	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2420703	.	G	.	.	LowGQX	.	GT	./.
chr1	2420704	.	G	.	.	LowGQX	END=2420726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2420727	.	T	.	.	LowGQX	.	GT	./.
chr1	2420728	.	G	.	.	LowGQX	END=2420744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2420745	.	G	.	.	LowGQX	.	GT	./.
chr1	2420746	.	T	.	.	LowGQX	END=2420761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2420762	.	A	.	.	LowGQX	.	GT	./.
chr1	2420763	.	A	.	.	LowGQX	END=2420778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2420779	.	C	.	.	LowGQX	.	GT	./.
chr1	2420780	.	C	.	.	LowGQX	END=2420783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2420784	.	T	.	.	LowGQX	.	GT	./.
chr1	2420785	.	C	.	.	LowGQX	END=2420817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2421198	.	G	.	.	LowGQX	END=2421230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2421231	.	T	.	.	LowGQX	.	GT	./.
chr1	2421232	.	G	.	.	LowGQX	END=2421306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2422630	.	G	.	.	LowGQX	END=2422688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2422689	.	T	.	.	LowGQX	.	GT	./.
chr1	2422690	.	C	.	.	LowGQX	END=2422704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2422705	.	T	.	.	LowGQX	.	GT	./.
chr1	2422706	.	C	.	.	LowGQX	END=2422727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2422728	.	A	.	.	LowGQX	.	GT	./.
chr1	2422729	.	C	.	.	LowGQX	END=2422769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2422770	.	G	.	.	LowGQX	END=2422774	GT	./.
chr1	2426231	.	T	.	.	LowGQX	END=2426238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2426239	.	T	.	.	LowGQX	.	GT	./.
chr1	2426240	.	C	.	.	LowGQX	END=2426256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2426257	.	C	.	.	LowGQX	.	GT	./.
chr1	2426258	.	T	.	.	LowGQX	END=2426260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2426261	.	A	.	.	LowGQX	.	GT	./.
chr1	2426262	.	C	.	.	LowGQX	END=2426270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2426271	.	T	.	.	LowGQX	.	GT	./.
chr1	2426272	.	C	.	.	LowGQX	END=2426274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2426275	.	T	.	.	LowGQX	.	GT	./.
chr1	2426276	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2426277	.	T	.	.	LowGQX	.	GT	./.
chr1	2426278	.	C	.	.	LowGQX	END=2426288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2426289	.	A	.	.	LowGQX	.	GT	./.
chr1	2426290	.	C	.	.	LowGQX	END=2426390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2426858	.	C	.	.	LowGQX	END=2427017	GT	./.
chr1	2428045	.	G	.	.	LowGQX	END=2428134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2428135	.	A	.	.	LowGQX	END=2428144	GT	./.
chr1	2428266	.	G	.	.	LowGQX	END=2428269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2428270	.	C	.	.	LowGQX	.	GT	./.
chr1	2428271	.	G	.	.	LowGQX	END=2428287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2428288	.	C	.	.	LowGQX	.	GT	./.
chr1	2428289	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2428290	.	T	.	.	LowGQX	.	GT	./.
chr1	2428291	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2428292	.	C	.	.	LowGQX	END=2428293	GT	./.
chr1	2428294	.	T	.	.	LowGQX	END=2428297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2428298	.	C	.	.	LowGQX	.	GT	./.
chr1	2428299	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2428300	.	A	.	.	LowGQX	.	GT	./.
chr1	2428301	.	G	.	.	LowGQX	END=2428304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2428305	.	A	.	.	LowGQX	END=2428307	GT	./.
chr1	2428308	.	G	.	.	LowGQX	END=2428309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2428310	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	2428311	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2428312	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	2428313	.	C	.	.	LowGQX	END=2428321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2428322	.	G	.	.	LowGQX	END=2428324	GT	./.
chr1	2428325	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2428326	.	C	.	.	LowGQX	.	GT	./.
chr1	2428327	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2428328	.	G	.	.	LowGQX	END=2428331	GT	./.
chr1	2428332	.	C	.	.	LowGQX	END=2428334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2428335	.	G	.	.	LowGQX	.	GT	./.
chr1	2428336	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2428337	.	G	.	.	LowGQX	.	GT	./.
chr1	2428338	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2428339	.	A	.	.	LowGQX	END=2428340	GT	./.
chr1	2428341	.	T	.	.	LowGQX	END=2428342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2428343	.	C	.	.	LowGQX	.	GT	./.
chr1	2428344	.	C	.	.	LowGQX	END=2428345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2428346	.	A	.	.	LowGQX	.	GT	./.
chr1	2428347	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2428348	.	G	.	.	LowGQX	END=2428350	GT	./.
chr1	2428351	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2428352	.	C	.	.	LowGQX	.	GT	./.
chr1	2428353	.	A	.	.	LowGQX	END=2428358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2428359	.	C	.	.	LowGQX	END=2428361	GT	./.
chr1	2428362	.	C	.	.	LowGQX	END=2428369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2428370	.	C	.	.	LowGQX	.	GT	./.
chr1	2428371	.	C	.	.	LowGQX	END=2428381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2428382	.	C	.	.	LowGQX	.	GT	./.
chr1	2428383	.	T	.	.	LowGQX	END=2428384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2428385	.	C	.	.	LowGQX	.	GT	./.
chr1	2428386	.	T	.	.	LowGQX	END=2428387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2428388	.	C	.	.	LowGQX	END=2428390	GT	./.
chr1	2428391	.	C	.	.	LowGQX	END=2428396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2428397	.	G	.	.	LowGQX	END=2428449	GT	./.
chr1	2428940	.	G	.	.	LowGQX	END=2429048	GT	./.
chr1	2429911	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	2429912	.	G	.	.	LowGQX	END=2429915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2429916	.	C	.	.	LowGQX	END=2429917	GT	./.
chr1	2429918	.	T	.	.	LowGQX	END=2429919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2429920	.	C	.	.	LowGQX	END=2429921	GT	./.
chr1	2429922	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	2429923	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	2429924	.	G	.	.	LowGQX	END=2429926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2429927	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	2429928	.	T	.	.	LowGQX	END=2429931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2429932	.	C	.	.	LowGQX	END=2430086	GT	./.
chr1	2430175	.	T	.	.	LowGQX	END=2430208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2430209	.	G	.	.	LowGQX	.	GT	./.
chr1	2430210	.	A	.	.	LowGQX	END=2430215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2430216	.	G	.	.	LowGQX	.	GT	./.
chr1	2430217	.	G	.	.	LowGQX	END=2430230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2430231	.	T	.	.	LowGQX	END=2430274	GT	./.
chr1	2430522	.	G	.	.	LowGQX	END=2430562	GT	./.
chr1	2430563	.	G	.	.	LowGQX	END=2430669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2431070	.	A	.	.	LowGQX	END=2431169	GT	./.
chr1	2433550	.	G	.	.	LowGQX	END=2433904	GT	./.
chr1	2433905	.	G	.	.	LowGQX	END=2433931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2433932	.	A	.	.	LowGQX	.	GT	./.
chr1	2433933	.	T	.	.	LowGQX	END=2433951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2433952	.	G	.	.	LowGQX	END=2433953	GT	./.
chr1	2433954	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2433955	.	T	.	.	LowGQX	.	GT	./.
chr1	2433956	.	G	.	.	LowGQX	END=2433963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2433964	.	A	.	.	LowGQX	.	GT	./.
chr1	2433965	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2433966	.	C	.	.	LowGQX	.	GT	./.
chr1	2433967	.	C	.	.	LowGQX	END=2433976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2433977	.	G	.	.	LowGQX	.	GT	./.
chr1	2433978	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2433979	.	G	.	.	LowGQX	.	GT	./.
chr1	2433980	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2433981	.	A	.	.	LowGQX	.	GT	./.
chr1	2433982	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2433983	.	A	.	.	LowGQX	.	GT	./.
chr1	2433984	.	C	.	.	LowGQX	END=2434000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434001	.	G	.	.	LowGQX	END=2434002	GT	./.
chr1	2434003	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	2434004	.	C	.	.	LowGQX	END=2434012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434013	.	A	.	.	LowGQX	.	GT	./.
chr1	2434014	.	G	.	.	LowGQX	END=2434018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434019	.	G	.	.	LowGQX	.	GT	./.
chr1	2434020	.	G	.	.	LowGQX	END=2434024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434025	.	G	.	.	LowGQX	.	GT	./.
chr1	2434026	.	C	.	.	LowGQX	END=2434030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434031	.	A	.	.	LowGQX	.	GT	./.
chr1	2434032	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434033	.	G	.	.	LowGQX	.	GT	./.
chr1	2434034	.	C	.	.	LowGQX	END=2434039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434040	.	G	.	.	LowGQX	END=2434044	GT	./.
chr1	2434045	.	T	.	.	LowGQX	END=2434049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434050	.	A	.	.	LowGQX	.	GT	./.
chr1	2434051	.	G	.	.	LowGQX	END=2434054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434055	.	C	.	.	LowGQX	END=2434112	GT	./.
chr1	2434113	.	T	.	.	LowGQX	END=2434114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434115	.	C	.	.	LowGQX	.	GT	./.
chr1	2434116	.	C	.	.	LowGQX	END=2434120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434121	.	A	.	.	LowGQX	.	GT	./.
chr1	2434122	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434123	.	A	.	.	LowGQX	END=2434124	GT	./.
chr1	2434125	.	G	.	.	LowGQX	END=2434126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434127	.	A	.	.	LowGQX	.	GT	./.
chr1	2434128	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434129	.	A	.	.	LowGQX	.	GT	./.
chr1	2434130	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434131	.	A	.	.	LowGQX	.	GT	./.
chr1	2434132	.	G	.	.	LowGQX	END=2434135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434136	.	C	.	.	LowGQX	END=2434140	GT	./.
chr1	2434141	.	G	.	.	LowGQX	END=2434143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434144	.	T	.	.	LowGQX	.	GT	./.
chr1	2434145	.	C	.	.	LowGQX	END=2434146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434147	.	T	.	.	LowGQX	.	GT	./.
chr1	2434148	.	G	.	.	LowGQX	END=2434151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434152	.	C	.	.	LowGQX	END=2434154	GT	./.
chr1	2434155	.	G	.	.	LowGQX	END=2434159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434160	.	C	.	.	LowGQX	END=2434161	GT	./.
chr1	2434162	.	G	.	.	LowGQX	END=2434166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434167	.	C	.	.	LowGQX	.	GT	./.
chr1	2434168	.	A	.	.	LowGQX	END=2434173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434174	.	T	.	.	LowGQX	.	GT	./.
chr1	2434175	.	A	.	.	LowGQX	END=2434180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434181	.	T	.	.	LowGQX	.	GT	./.
chr1	2434182	.	C	.	.	LowGQX	END=2434204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434205	.	C	.	.	LowGQX	.	GT	./.
chr1	2434206	.	C	.	.	LowGQX	END=2434220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434221	.	T	.	.	LowGQX	.	GT	./.
chr1	2434222	.	C	.	.	LowGQX	END=2434228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434229	.	A	.	.	LowGQX	.	GT	./.
chr1	2434230	.	G	.	.	LowGQX	END=2434231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434232	.	T	.	.	LowGQX	.	GT	./.
chr1	2434233	.	C	.	.	LowGQX	END=2434261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2434262	.	C	.	.	LowGQX	END=2434525	GT	./.
chr1	2434951	.	G	.	.	LowGQX	END=2434975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2434976	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	2434977	.	C	.	.	LowGQX	END=2434989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2434990	.	A	.	.	LowGQX	END=2435110	GT	./.
chr1	2435360	.	G	.	.	LowGQX	END=2435501	GT	./.
chr1	2435502	.	C	.	.	LowGQX	END=2435663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2435664	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	2435665	.	G	.	.	LowGQX	END=2435681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2435682	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	2435683	.	G	.	.	LowGQX	END=2435684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2435685	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	2435686	.	G	.	.	LowGQX	END=2435698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2435699	.	G	.	.	LowGQX	END=2435700	GT	./.
chr1	2435701	.	G	.	.	LowGQX	END=2435707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2435708	.	G	.	.	LowGQX	END=2435709	GT	./.
chr1	2435710	.	G	.	.	LowGQX	END=2435711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2435712	.	C	.	.	LowGQX	.	GT	./.
chr1	2435713	.	C	.	.	LowGQX	END=2435714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2435715	.	T	.	.	LowGQX	.	GT	./.
chr1	2435716	.	G	.	.	LowGQX	END=2435719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2435720	.	G	.	.	LowGQX	.	GT	./.
chr1	2435721	.	G	.	.	LowGQX	END=2435722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2435723	.	T	.	.	LowGQX	.	GT	./.
chr1	2435724	.	G	.	.	LowGQX	END=2435728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2435729	.	C	.	.	LowGQX	.	GT	./.
chr1	2435730	.	C	.	.	LowGQX	END=2435737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2435738	.	G	.	.	LowGQX	.	GT	./.
chr1	2435739	.	C	.	.	LowGQX	END=2435753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2435754	.	C	.	.	LowGQX	.	GT	./.
chr1	2435755	.	T	.	.	LowGQX	END=2435769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2435770	.	T	.	.	LowGQX	.	GT	./.
chr1	2435771	.	G	.	.	LowGQX	END=2435773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2435774	.	A	.	.	LowGQX	.	GT	./.
chr1	2435775	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2435776	.	G	.	.	LowGQX	.	GT	./.
chr1	2435777	.	G	.	.	LowGQX	END=2435789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2435790	.	T	.	.	LowGQX	END=2436653	GT	./.
chr1	2440284	.	C	.	.	LowGQX	END=2440300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2440301	.	C	.	.	LowGQX	END=2440501	GT	./.
chr1	2441286	.	A	.	.	LowGQX	END=2441385	GT	./.
chr1	2441494	.	A	.	.	LowGQX	END=2441598	GT	./.
chr1	2442115	.	A	.	.	LowGQX	END=2442123	GT	./.
chr1	2442124	.	C	.	.	LowGQX	END=2442223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2442752	.	A	.	.	LowGQX	END=2442804	GT	./.
chr1	2442805	.	G	.	.	LowGQX	END=2442807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2442808	.	T	.	.	LowGQX	.	GT	./.
chr1	2442809	.	C	.	.	LowGQX	END=2442851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2443045	.	C	.	.	LowGQX	END=2443144	GT	./.
chr1	2444295	.	G	.	.	LowGQX	END=2444305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2444306	.	T	.	.	LowGQX	.	GT	./.
chr1	2444307	.	C	.	.	LowGQX	END=2444454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2444455	.	C	.	.	LowGQX	END=2444480	GT	./.
chr1	2445435	.	A	.	.	LowGQX	.	GT	./.
chr1	2445436	.	C	.	.	LowGQX	END=2445459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2445460	.	A	.	.	LowGQX	.	GT	./.
chr1	2445461	.	A	.	.	LowGQX	END=2445465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2445466	.	A	.	.	LowGQX	.	GT	./.
chr1	2445467	.	A	.	.	LowGQX	END=2445471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2445472	.	T	.	.	LowGQX	.	GT	./.
chr1	2445473	.	T	.	.	LowGQX	END=2445508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2445509	.	C	.	.	LowGQX	END=2445534	GT	./.
chr1	2445791	.	A	.	.	LowGQX	END=2445821	GT	./.
chr1	2445822	.	G	.	.	LowGQX	END=2445907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2446752	.	C	.	.	LowGQX	END=2446768	GT	./.
chr1	2446769	.	C	.	.	LowGQX	END=2446796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2446797	.	A	.	.	LowGQX	.	GT	./.
chr1	2446798	.	C	.	.	LowGQX	END=2446839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2446840	.	C	.	.	LowGQX	.	GT	./.
chr1	2446841	.	C	.	.	LowGQX	END=2446846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2446847	.	A	.	.	LowGQX	.	GT	./.
chr1	2446848	.	A	.	.	LowGQX	END=2446851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2446999	.	A	.	.	LowGQX	END=2447012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2447013	.	C	.	.	LowGQX	END=2447158	GT	./.
chr1	2449601	.	A	.	.	LowGQX	END=2449698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	2449699	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	2449700	.	G	.	.	LowGQX	END=2449703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	2449704	.	C	.	.	LowGQX	END=2449705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2449946	.	G	.	.	LowGQX	END=2449970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2449971	.	T	.	.	LowGQX	.	GT	./.
chr1	2449972	.	T	.	.	LowGQX	END=2449990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2449991	.	C	.	.	LowGQX	END=2450045	GT	./.
chr1	2450580	.	A	.	.	LowGQX	END=2450613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2450614	.	T	.	.	LowGQX	END=2450765	GT	./.
chr1	2451238	.	A	.	.	LowGQX	END=2451292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2451293	.	A	.	.	LowGQX	END=2451372	GT	./.
chr1	2451373	.	G	.	.	LowGQX	END=2451395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2451758	.	T	.	.	LowGQX	END=2451857	GT	./.
chr1	2452149	.	A	.	.	LowGQX	END=2452347	GT	./.
chr1	2452538	.	A	.	.	LowGQX	END=2452756	GT	./.
chr1	2453052	.	A	.	.	LowGQX	END=2453297	GT	./.
chr1	2453298	.	G	.	.	LowGQX	END=2453369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2453370	.	A	.	.	LowGQX	.	GT	./.
chr1	2453371	.	C	.	.	LowGQX	END=2453380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2457851	.	C	.	.	LowGQX	END=2458070	GT	./.
chr1	2460905	.	G	.	.	LowGQX	END=2461190	GT	./.
chr1	2461283	.	A	.	.	LowGQX	END=2461452	GT	./.
chr1	2461527	.	C	.	.	LowGQX	END=2461626	GT	./.
chr1	2487651	.	T	.	.	LowGQX	END=2487654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2487655	.	T	.	.	LowGQX	.	GT	./.
chr1	2487656	.	C	.	.	LowGQX	END=2487662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2487663	.	C	A	14.90	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.45;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	2487664	.	C	.	.	LowGQX	END=2487680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2487681	.	T	.	.	LowGQX	.	GT	./.
chr1	2487682	.	C	.	.	LowGQX	END=2487704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2487705	.	G	.	.	LowGQX	.	GT	./.
chr1	2487706	.	G	.	.	LowGQX	END=2487722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2487723	.	T	.	.	LowGQX	.	GT	./.
chr1	2487724	.	G	.	.	LowGQX	END=2487730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2487731	.	T	.	.	LowGQX	.	GT	./.
chr1	2487732	.	C	.	.	LowGQX	END=2487736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2487737	.	T	.	.	LowGQX	.	GT	./.
chr1	2487738	.	T	.	.	LowGQX	END=2487749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2487750	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	2487751	.	C	.	.	LowGQX	END=2487765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2487766	.	T	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	2487767	.	G	.	.	LowGQX	END=2488061	GT	./.
chr1	2488089	.	G	.	.	LowGQX	END=2488188	GT	./.
chr1	2489163	.	A	.	.	LowGQX	END=2489275	GT	./.
chr1	2489780	.	A	.	.	LowGQX	END=2489801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2489802	.	T	.	.	LowGQX	.	GT	./.
chr1	2489803	.	G	.	.	LowGQX	END=2489846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2489847	.	A	.	.	LowGQX	END=2489949	GT	./.
chr1	2490319	.	G	.	.	LowGQX	END=2490513	GT	./.
chr1	2490514	.	G	.	.	LowGQX	END=2490515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490516	.	C	.	.	LowGQX	END=2490517	GT	./.
chr1	2490518	.	A	.	.	LowGQX	END=2490526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490527	.	T	.	.	LowGQX	.	GT	./.
chr1	2490528	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490529	.	C	.	.	LowGQX	.	GT	./.
chr1	2490530	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490531	.	C	.	.	LowGQX	END=2490533	GT	./.
chr1	2490534	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490535	.	C	.	.	LowGQX	.	GT	./.
chr1	2490536	.	G	.	.	LowGQX	END=2490539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490540	.	C	.	.	LowGQX	.	GT	./.
chr1	2490541	.	A	.	.	LowGQX	END=2490544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490545	.	C	.	.	LowGQX	END=2490546	GT	./.
chr1	2490547	.	G	.	.	LowGQX	END=2490548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490549	.	C	.	.	LowGQX	.	GT	./.
chr1	2490550	.	G	.	.	LowGQX	END=2490551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490552	.	C	.	.	LowGQX	END=2490555	GT	./.
chr1	2490556	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490557	.	C	.	.	LowGQX	.	GT	./.
chr1	2490558	.	T	.	.	LowGQX	END=2490563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490564	.	C	.	.	LowGQX	END=2490565	GT	./.
chr1	2490566	.	G	.	.	LowGQX	END=2490568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490569	.	C	.	.	LowGQX	END=2490570	GT	./.
chr1	2490571	.	T	.	.	LowGQX	END=2490572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490573	.	A	.	.	LowGQX	.	GT	./.
chr1	2490574	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490575	.	C	.	.	LowGQX	END=2490576	GT	./.
chr1	2490577	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490578	.	A	.	.	LowGQX	END=2490580	GT	./.
chr1	2490581	.	G	.	.	LowGQX	END=2490583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490584	.	A	.	.	LowGQX	.	GT	./.
chr1	2490585	.	G	.	.	LowGQX	END=2490586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490587	.	C	.	.	LowGQX	END=2490590	GT	./.
chr1	2490591	.	G	.	.	LowGQX	END=2490592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490593	.	G	.	.	LowGQX	.	GT	./.
chr1	2490594	.	C	.	.	LowGQX	END=2490597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2490598	.	T	.	.	LowGQX	.	GT	./.
chr1	2490599	.	G	.	.	LowGQX	END=2490602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2490603	.	T	.	.	LowGQX	.	GT	./.
chr1	2490604	.	A	.	.	LowGQX	END=2490606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2490607	.	C	.	.	LowGQX	.	GT	./.
chr1	2490608	.	A	.	.	LowGQX	END=2490618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2490619	.	A	.	.	LowGQX	.	GT	./.
chr1	2490620	.	G	.	.	LowGQX	END=2490622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2490623	.	A	.	.	LowGQX	.	GT	./.
chr1	2490624	.	G	.	.	LowGQX	END=2490644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2490645	.	A	.	.	LowGQX	.	GT	./.
chr1	2490646	.	T	.	.	LowGQX	END=2490666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490667	.	G	.	.	LowGQX	.	GT	./.
chr1	2490668	.	G	.	.	LowGQX	END=2490679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490680	.	A	.	.	LowGQX	.	GT	./.
chr1	2490681	.	C	.	.	LowGQX	END=2490685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490686	.	A	.	.	LowGQX	.	GT	./.
chr1	2490687	.	T	.	.	LowGQX	END=2490726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490727	.	T	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	2490728	.	C	.	.	LowGQX	END=2490743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490744	.	T	.	.	LowGQX	END=2490750	GT	./.
chr1	2490751	.	G	.	.	LowGQX	END=2490897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490898	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	2490899	.	G	.	.	LowGQX	END=2490914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490915	.	T	.	.	LowGQX	END=2490965	GT	./.
chr1	2490966	.	G	.	.	LowGQX	END=2490976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2490977	.	G	.	.	LowGQX	.	GT	./.
chr1	2490978	.	C	.	.	LowGQX	END=2491001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491002	.	C	.	.	LowGQX	.	GT	./.
chr1	2491003	.	T	.	.	LowGQX	END=2491004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491005	.	G	.	.	LowGQX	END=2491006	GT	./.
chr1	2491007	.	T	.	.	LowGQX	END=2491020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491021	.	A	.	.	LowGQX	END=2491022	GT	./.
chr1	2491023	.	G	.	.	LowGQX	END=2491033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491034	.	A	.	.	LowGQX	.	GT	./.
chr1	2491035	.	C	.	.	LowGQX	END=2491037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491038	.	T	.	.	LowGQX	.	GT	./.
chr1	2491039	.	C	.	.	LowGQX	END=2491044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491045	.	A	.	.	LowGQX	END=2491046	GT	./.
chr1	2491047	.	C	.	.	LowGQX	END=2491052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491053	.	T	.	.	LowGQX	.	GT	./.
chr1	2491054	.	C	.	.	LowGQX	END=2491058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491059	.	A	.	.	LowGQX	.	GT	./.
chr1	2491060	.	C	.	.	LowGQX	END=2491107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491108	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	2491109	.	C	.	.	LowGQX	END=2491114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2491115	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	2491116	.	C	.	.	LowGQX	END=2491204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491205	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	2491206	.	G	.	.	LowGQX	END=2491252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491253	.	G	.	.	LowGQX	.	GT	./.
chr1	2491254	.	G	.	.	LowGQX	END=2491270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491271	.	T	.	.	LowGQX	END=2491319	GT	./.
chr1	2491320	.	C	.	.	LowGQX	END=2491325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491326	.	A	.	.	LowGQX	.	GT	./.
chr1	2491327	.	G	.	.	LowGQX	END=2491333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491334	.	T	.	.	LowGQX	.	GT	./.
chr1	2491335	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491336	.	T	.	.	LowGQX	END=2491337	GT	./.
chr1	2491338	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491339	.	A	.	.	LowGQX	.	GT	./.
chr1	2491340	.	T	.	.	LowGQX	END=2491352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491353	.	G	.	.	LowGQX	.	GT	./.
chr1	2491354	.	G	.	.	LowGQX	END=2491359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491360	.	T	.	.	LowGQX	.	GT	./.
chr1	2491361	.	G	.	.	LowGQX	END=2491368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491369	.	T	.	.	LowGQX	.	GT	./.
chr1	2491370	.	G	.	.	LowGQX	END=2491376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491377	.	T	.	.	LowGQX	END=2491378	GT	./.
chr1	2491379	.	A	.	.	LowGQX	END=2491389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491390	.	A	.	.	LowGQX	.	GT	./.
chr1	2491391	.	G	.	.	LowGQX	END=2491395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491396	.	G	.	.	LowGQX	.	GT	./.
chr1	2491397	.	G	.	.	LowGQX	END=2491401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491402	.	A	.	.	LowGQX	.	GT	./.
chr1	2491403	.	G	.	.	LowGQX	END=2491405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491406	.	T	.	.	LowGQX	.	GT	./.
chr1	2491407	.	G	.	.	LowGQX	END=2491411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491412	.	A	.	.	LowGQX	.	GT	./.
chr1	2491413	.	G	.	.	LowGQX	END=2491416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491417	.	G	.	.	LowGQX	.	GT	./.
chr1	2491418	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2491419	.	T	.	.	LowGQX	.	GT	./.
chr1	2492060	.	C	.	.	LowGQX	END=2492159	GT	./.
chr1	2492932	.	G	.	.	LowGQX	END=2492996	GT	./.
chr1	2492997	.	C	.	.	LowGQX	END=2493003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2493004	.	A	.	.	LowGQX	END=2493005	GT	./.
chr1	2493006	.	C	.	.	LowGQX	END=2493017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2493018	.	C	.	.	LowGQX	.	GT	./.
chr1	2493019	.	C	.	.	LowGQX	END=2493023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2493024	.	G	.	.	LowGQX	.	GT	./.
chr1	2493025	.	C	.	.	LowGQX	END=2493043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2493044	.	T	.	.	LowGQX	.	GT	./.
chr1	2493045	.	C	.	.	LowGQX	END=2493047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2493048	.	T	.	.	LowGQX	.	GT	./.
chr1	2493049	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2493050	.	A	.	.	LowGQX	.	GT	./.
chr1	2493051	.	G	.	.	LowGQX	END=2493053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2493054	.	T	.	.	LowGQX	.	GT	./.
chr1	2493055	.	G	.	.	LowGQX	END=2493057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2493058	.	T	.	.	LowGQX	.	GT	./.
chr1	2493059	.	G	.	.	LowGQX	END=2493060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2493110	.	A	.	.	LowGQX	END=2493127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	2493128	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	2493129	.	C	.	.	LowGQX	END=2493138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	2493139	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	2493140	.	G	.	.	LowGQX	END=2493149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2493150	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	2493151	.	C	.	.	LowGQX	END=2493162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	2493163	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	2493164	.	G	.	.	LowGQX	END=2493178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	2493179	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	2493180	.	C	.	.	LowGQX	END=2493181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	2493182	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	2493183	.	G	.	.	LowGQX	END=2493188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	2493189	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	2493190	.	C	.	.	LowGQX	END=2493194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	2493195	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	2493196	.	C	.	.	LowGQX	END=2493201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	2493202	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	2493203	.	G	.	.	LowGQX	END=2493204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	2493205	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	2493206	.	T	.	.	LowGQX	END=2493208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	2493209	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	2493210	.	C	.	.	LowGQX	END=2493211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	2493212	.	A	.	.	LowGQX	END=2493215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	2493216	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	2493217	.	T	.	.	LowGQX	END=2493245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2493246	.	A	.	.	LowGQX	.	GT	./.
chr1	2493247	.	G	.	.	LowGQX	END=2493256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2494210	.	T	.	.	LowGQX	END=2494369	GT	./.
chr1	2494585	.	A	.	.	LowGQX	END=2494631	GT	./.
chr1	2494632	.	C	.	.	LowGQX	END=2494714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2518213	.	G	.	.	LowGQX	END=2518389	GT	./.
chr1	2518488	.	C	.	.	LowGQX	END=2518797	GT	./.
chr1	2519096	.	A	.	.	LowGQX	END=2519255	GT	./.
chr1	2519774	.	G	.	.	LowGQX	END=2519894	GT	./.
chr1	2519968	.	G	.	.	LowGQX	END=2519987	GT	./.
chr1	2519988	.	G	.	.	LowGQX	END=2519989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2519990	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	2519991	.	C	.	.	LowGQX	END=2519996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2519997	.	T	.	.	LowGQX	END=2519999	GT	./.
chr1	2520000	.	T	.	.	LowGQX	END=2520002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2520003	.	C	.	.	LowGQX	.	GT	./.
chr1	2520004	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2520005	.	T	.	.	LowGQX	END=2520006	GT	./.
chr1	2520007	.	C	.	.	LowGQX	END=2520010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2520011	.	G	.	.	LowGQX	.	GT	./.
chr1	2520012	.	G	.	.	LowGQX	END=2520016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2520017	.	T	.	.	LowGQX	.	GT	./.
chr1	2520018	.	G	.	.	LowGQX	END=2520029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2520030	.	G	.	.	LowGQX	.	GT	./.
chr1	2520031	.	C	.	.	LowGQX	END=2520035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2520036	.	G	.	.	LowGQX	END=2520038	GT	./.
chr1	2520039	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2520040	.	G	.	.	LowGQX	END=2520041	GT	./.
chr1	2520042	.	A	.	.	LowGQX	END=2520043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2520044	.	G	.	.	LowGQX	.	GT	./.
chr1	2520045	.	G	.	.	LowGQX	END=2520048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2520049	.	C	.	.	LowGQX	END=2520051	GT	./.
chr1	2520052	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2520053	.	T	.	.	LowGQX	.	GT	./.
chr1	2520054	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2520055	.	G	.	.	LowGQX	.	GT	./.
chr1	2520056	.	T	.	.	LowGQX	END=2520057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2520058	.	A	.	.	LowGQX	.	GT	./.
chr1	2520059	.	G	.	.	LowGQX	END=2520060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2520061	.	A	.	.	LowGQX	END=2520062	GT	./.
chr1	2520063	.	A	.	.	LowGQX	END=2520064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2520065	.	G	.	.	LowGQX	.	GT	./.
chr1	2520066	.	T	.	.	LowGQX	END=2520067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2520359	.	A	.	.	LowGQX	END=2520361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2520362	.	T	.	.	LowGQX	END=2520481	GT	./.
chr1	2520833	.	C	.	.	LowGQX	END=2520932	GT	./.
chr1	2522369	.	T	.	.	PASS	END=2522379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	2522380	.	C	.	.	PASS	END=2522397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	2522398	.	G	.	.	PASS	END=2522411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:82:60
chr1	2522412	.	G	.	.	PASS	END=2522455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	2522456	.	G	.	.	PASS	END=2522530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	2522985	.	G	.	.	PASS	END=2523012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	2523013	.	G	.	.	PASS	END=2523073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	2523074	.	T	.	.	PASS	END=2523084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	2523369	.	A	.	.	PASS	END=2523398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	2523399	.	T	.	.	PASS	END=2523450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	2523451	.	T	.	.	PASS	END=2523468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	2524077	.	C	.	.	PASS	END=2524090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:59
chr1	2524091	.	C	.	.	PASS	END=2524092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	2524093	.	C	.	.	PASS	END=2524112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	2524113	.	C	.	.	PASS	END=2524176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	2524270	.	A	.	.	PASS	END=2524299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	2524300	.	T	.	.	PASS	END=2524407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	2525251	.	A	.	.	PASS	END=2525331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	2525332	.	C	.	.	PASS	END=2525366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	2525367	.	G	.	.	PASS	END=2525401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:93:60
chr1	2525804	.	A	.	.	PASS	END=2525893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	2525894	.	A	.	.	PASS	END=2525903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	2526227	.	A	.	.	PASS	END=2526327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	2526328	.	T	.	.	PASS	END=2526334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	2526652	.	C	.	.	PASS	END=2526732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	2526733	.	C	.	.	PASS	END=2526745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	2526746	.	A	G	603.43	PASS	BaseQRankSum=1.122;DP=71;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.3630;MQ=60;MQ0=0;MQRankSum=-1.496;QD=8.50;ReadPosRankSum=1.219;SB=-207.09	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:43,27:71:99:633,0,1065:60:99:0.386
chr1	2526747	.	T	.	.	PASS	END=2526788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:90:60
chr1	2526789	.	T	.	.	PASS	END=2526806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr1	2527446	.	A	.	.	PASS	END=2527525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:95:60
chr1	2527526	.	C	.	.	PASS	END=2527548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	2527998	.	A	.	.	PASS	END=2528104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	2528105	.	C	.	.	PASS	END=2528123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	2528124	.	A	.	.	PASS	END=2528130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	2529643	.	C	.	.	PASS	END=2529735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	2529736	.	G	.	.	PASS	END=2529742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	2530091	.	A	.	.	PASS	END=2530229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	2530230	.	C	.	.	PASS	END=2530231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	2535318	.	C	.	.	PASS	END=2535417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr1	2535584	.	A	.	.	PASS	END=2535612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	2535613	.	C	A	2124.74	PASS	BaseQRankSum=1.149;DP=168;Dels=0.00;FS=5.446;HRun=1;HaplotypeScore=13.3096;MQ=60;MQ0=0;MQRankSum=0.536;QD=12.65;ReadPosRankSum=-1.324;SB=-462.61	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:93,75:168:99:2155,0,2882:60:99:0.446
chr1	2535614	.	A	.	.	PASS	END=2535722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	2536980	.	G	.	.	PASS	END=2537028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	2537029	.	C	.	.	PASS	END=2537079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	2537685	.	A	.	.	PASS	END=2537759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	2537760	.	T	.	.	PASS	END=2537807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	2538411	.	A	.	.	PASS	END=2538451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	2538452	.	C	.	.	PASS	END=2538508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	2538509	.	C	.	.	PASS	END=2538510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	2540769	.	C	.	.	PASS	END=2540780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	2540781	.	G	.	.	PASS	END=2540793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	2540794	.	G	.	.	PASS	END=2540833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	2540834	.	T	.	.	PASS	END=2540868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	2541107	.	A	.	.	PASS	END=2541138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	2541139	.	G	.	.	PASS	END=2541247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	2541248	.	C	.	.	PASS	END=2541268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	2541269	.	A	G	2143.70	PASS	BaseQRankSum=1.235;DP=159;Dels=0.00;FS=1.501;HRun=1;HaplotypeScore=22.0354;MQ=60;MQ0=0;MQRankSum=-1.349;QD=13.48;ReadPosRankSum=-2.176;SB=-666.80	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:78,81:159:99:2174,0,1854:60:99:0.509
chr1	2541270	.	G	.	.	PASS	END=2541272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	2542640	.	T	.	.	PASS	END=2542652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	2542653	.	A	G	1368.50	PASS	BaseQRankSum=2.386;DP=121;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=13.4655;MQ=60;MQ0=0;MQRankSum=0.911;QD=11.31;ReadPosRankSum=0.922;SB=-862.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:64,57:121:99:1398,0,1352:60:99:0.471
chr1	2542654	.	C	.	.	PASS	END=2542739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	2542740	.	G	.	.	PASS	END=2542769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	2542770	.	T	.	.	PASS	END=2542798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	2542799	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:99:60
chr1	2543555	.	G	.	.	PASS	END=2543654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	2560738	.	G	.	.	PASS	END=2560740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	2560741	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:54:60
chr1	2560742	.	C	.	.	PASS	END=2560743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	2560744	.	G	.	.	PASS	END=2560761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	2560762	.	G	.	.	PASS	END=2560780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:84:60
chr1	2560781	.	G	.	.	PASS	END=2560830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	2560831	.	C	.	.	PASS	END=2560881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:93:60
chr1	2560882	.	G	A	810.92	PASS	BaseQRankSum=-0.498;DP=95;Dels=0.00;FS=0.894;HRun=0;HaplotypeScore=21.8744;MQ=60;MQ0=0;MQRankSum=-0.882;QD=8.54;ReadPosRankSum=0.129;SB=-309.84	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:50,42:95:99:841,0,1059:60:99:0.457
chr1	2560883	.	G	.	.	PASS	END=2560897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	2560898	.	C	.	.	PASS	END=2560902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:89:60
chr1	2560903	.	T	G	618.83	PASS	BaseQRankSum=0.718;DP=71;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=14.2542;MQ=60;MQ0=0;MQRankSum=-0.850;QD=8.72;ReadPosRankSum=0.694;SB=-186.80	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,31:71:99:649,0,638:60:99:0.449
chr1	2560904	.	G	.	.	PASS	END=2560923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	2572806	.	G	.	.	LowGQX	END=2573149	GT	./.
chr1	2573150	.	T	.	.	LowGQX	END=2573198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2573199	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	2573200	.	C	.	.	LowGQX	END=2573267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2573268	.	A	.	.	LowGQX	.	GT	./.
chr1	2573269	.	A	.	.	LowGQX	END=2573278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2573279	.	A	.	.	LowGQX	.	GT	./.
chr1	2573280	.	G	.	.	LowGQX	END=2573297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2573298	.	C	.	.	LowGQX	END=2573334	GT	./.
chr1	2575702	.	C	.	.	LowGQX	END=2575917	GT	./.
chr1	2576731	.	C	.	.	LowGQX	END=2577002	GT	./.
chr1	2700153	.	C	.	.	LowGQX	END=2700250	GT	./.
chr1	2700251	.	G	.	.	LowGQX	END=2700320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2702343	.	G	.	.	LowGQX	END=2702588	GT	./.
chr1	2704045	.	C	.	.	LowGQX	END=2704271	GT	./.
chr1	2706002	.	T	.	.	LowGQX	END=2706017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2706018	.	A	.	.	LowGQX	.	GT	./.
chr1	2706019	.	G	.	.	LowGQX	END=2706048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2706049	.	T	.	.	LowGQX	.	GT	./.
chr1	2706050	.	G	.	.	LowGQX	END=2706077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2706078	.	T	.	.	LowGQX	.	GT	./.
chr1	2706079	.	G	.	.	LowGQX	END=2706115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2706116	.	T	.	.	LowGQX	END=2706161	GT	./.
chr1	2938249	.	G	.	.	LowGQX	END=2938257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2938258	.	A	.	.	LowGQX	.	GT	./.
chr1	2938259	.	T	.	.	LowGQX	END=2938302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2938303	.	C	.	.	LowGQX	.	GT	./.
chr1	2938304	.	G	.	.	LowGQX	END=2938315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2938316	.	A	.	.	LowGQX	END=2939067	GT	./.
chr1	2939068	.	G	.	.	LowGQX	END=2939162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2939163	.	A	.	.	LowGQX	.	GT	./.
chr1	2939164	.	C	.	.	LowGQX	END=2939187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2939188	.	A	.	.	LowGQX	.	GT	./.
chr1	2939189	.	C	.	.	LowGQX	END=2939217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2939218	.	C	.	.	LowGQX	END=2939221	GT	./.
chr1	2939222	.	C	.	.	LowGQX	END=2939372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2939373	.	A	.	.	LowGQX	END=2939386	GT	./.
chr1	2980615	.	A	.	.	LowGQX	END=2980843	GT	./.
chr1	2980844	.	G	.	.	LowGQX	END=2980866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2983901	.	C	.	.	LowGQX	END=2984165	GT	./.
chr1	2985742	.	C	.	.	LowGQX	END=2985746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2985747	.	A	.	.	LowGQX	.	GT	./.
chr1	2985748	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2985749	.	T	.	.	LowGQX	.	GT	./.
chr1	2985750	.	G	.	.	LowGQX	END=2985751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	2985752	.	T	.	.	LowGQX	.	GT	./.
chr1	2985753	.	G	.	.	LowGQX	END=2985759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2985760	.	T	.	.	LowGQX	.	GT	./.
chr1	2985761	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2985762	.	A	.	.	LowGQX	END=2985763	GT	./.
chr1	2985764	.	G	.	.	LowGQX	END=2985766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2985767	.	A	.	.	LowGQX	.	GT	./.
chr1	2985768	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2985769	.	T	.	.	LowGQX	.	GT	./.
chr1	2985770	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2985771	.	T	.	.	LowGQX	.	GT	./.
chr1	2985772	.	G	.	.	LowGQX	END=2985776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2985777	.	T	.	.	LowGQX	.	GT	./.
chr1	2985778	.	G	.	.	LowGQX	END=2985782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2985783	.	T	.	.	LowGQX	.	GT	./.
chr1	2985784	.	G	.	.	LowGQX	END=2985787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2985788	.	T	.	.	LowGQX	.	GT	./.
chr1	2985789	.	C	.	.	LowGQX	END=2985790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2985791	.	A	.	.	LowGQX	.	GT	./.
chr1	2985792	.	G	.	.	LowGQX	END=2985806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2985807	.	T	.	.	LowGQX	END=2985808	GT	./.
chr1	2985809	.	C	.	.	LowGQX	END=2985883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	2985884	.	G	.	.	LowGQX	END=2985892	GT	./.
chr1	3102675	.	G	.	.	LowGQX	END=3102797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3102798	.	G	.	.	LowGQX	END=3103040	GT	./.
chr1	3160627	.	A	.	.	LowGQX	END=3160726	GT	./.
chr1	3301712	.	G	.	.	LowGQX	END=3301852	GT	./.
chr1	3310947	.	C	.	.	LowGQX	END=3311106	GT	./.
chr1	3312844	.	C	.	.	LowGQX	END=3312943	GT	./.
chr1	3312997	.	G	.	.	LowGQX	END=3313159	GT	./.
chr1	3319353	.	A	.	.	LowGQX	END=3319564	GT	./.
chr1	3321271	.	G	.	.	LowGQX	END=3321286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3321287	.	C	.	.	LowGQX	END=3321325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	3321326	.	A	.	.	LowGQX	END=3321452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3322057	.	A	.	.	LowGQX	END=3322173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3322174	.	A	.	.	LowGQX	.	GT	./.
chr1	3322175	.	G	.	.	LowGQX	END=3322198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3322199	.	G	.	.	LowGQX	.	GT	./.
chr1	3322200	.	A	.	.	LowGQX	END=3322214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3327946	.	A	.	.	LowGQX	END=3327963	GT	./.
chr1	3327964	.	G	.	.	LowGQX	END=3327971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3327972	.	C	.	.	LowGQX	.	GT	./.
chr1	3327973	.	G	.	.	LowGQX	END=3327978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3327979	.	C	.	.	LowGQX	END=3327980	GT	./.
chr1	3327981	.	C	.	.	LowGQX	END=3328002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328003	.	G	.	.	LowGQX	.	GT	./.
chr1	3328004	.	A	.	.	LowGQX	END=3328005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328006	.	G	.	.	LowGQX	.	GT	./.
chr1	3328007	.	C	.	.	LowGQX	END=3328039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328040	.	G	.	.	LowGQX	.	GT	./.
chr1	3328041	.	A	.	.	LowGQX	END=3328044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328045	.	T	.	.	LowGQX	.	GT	./.
chr1	3328046	.	G	.	.	LowGQX	END=3328047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328048	.	C	.	.	LowGQX	END=3328049	GT	./.
chr1	3328050	.	A	.	.	LowGQX	END=3328055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328056	.	T	.	.	LowGQX	.	GT	./.
chr1	3328057	.	C	.	.	LowGQX	END=3328072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328073	.	C	.	.	LowGQX	.	GT	./.
chr1	3328074	.	T	.	.	LowGQX	END=3328078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328079	.	A	.	.	LowGQX	END=3328080	GT	./.
chr1	3328081	.	G	.	.	LowGQX	END=3328088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328089	.	G	.	.	LowGQX	.	GT	./.
chr1	3328090	.	C	.	.	LowGQX	END=3328098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328099	.	G	.	.	LowGQX	END=3328100	GT	./.
chr1	3328101	.	G	.	.	LowGQX	END=3328110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328111	.	T	.	.	LowGQX	.	GT	./.
chr1	3328112	.	T	.	.	LowGQX	END=3328113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328114	.	C	.	.	LowGQX	END=3328119	GT	./.
chr1	3328120	.	G	.	.	LowGQX	END=3328125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328126	.	C	.	.	LowGQX	.	GT	./.
chr1	3328127	.	A	.	.	LowGQX	END=3328128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328129	.	C	.	.	LowGQX	.	GT	./.
chr1	3328130	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328131	.	T	.	.	LowGQX	.	GT	./.
chr1	3328132	.	T	.	.	LowGQX	END=3328133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328134	.	C	.	.	LowGQX	END=3328136	GT	./.
chr1	3328137	.	C	.	.	LowGQX	END=3328140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328141	.	C	.	.	LowGQX	.	GT	./.
chr1	3328142	.	C	.	.	LowGQX	END=3328145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328146	.	C	.	.	LowGQX	END=3328148	GT	./.
chr1	3328149	.	T	.	.	LowGQX	END=3328153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328154	.	C	.	.	LowGQX	END=3328155	GT	./.
chr1	3328156	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328157	.	A	.	.	LowGQX	END=3328158	GT	./.
chr1	3328159	.	C	.	.	LowGQX	END=3328161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328162	.	C	.	.	LowGQX	.	GT	./.
chr1	3328163	.	A	.	.	LowGQX	END=3328164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328165	.	G	.	.	LowGQX	END=3328166	GT	./.
chr1	3328167	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328168	.	G	.	.	LowGQX	.	GT	./.
chr1	3328169	.	G	.	.	LowGQX	END=3328179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328180	.	A	.	.	LowGQX	END=3328182	GT	./.
chr1	3328183	.	C	.	.	LowGQX	END=3328188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328189	.	C	.	.	LowGQX	.	GT	./.
chr1	3328190	.	A	.	.	LowGQX	END=3328198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328199	.	C	.	.	LowGQX	.	GT	./.
chr1	3328200	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328201	.	C	.	.	LowGQX	.	GT	./.
chr1	3328202	.	G	.	.	LowGQX	END=3328210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328211	.	G	.	.	LowGQX	.	GT	./.
chr1	3328212	.	G	.	.	LowGQX	END=3328229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328230	.	C	.	.	LowGQX	.	GT	./.
chr1	3328231	.	C	.	.	LowGQX	END=3328232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328233	.	C	.	.	LowGQX	END=3328234	GT	./.
chr1	3328235	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328236	.	G	.	.	LowGQX	.	GT	./.
chr1	3328237	.	G	.	.	LowGQX	END=3328242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328243	.	C	.	.	LowGQX	.	GT	./.
chr1	3328244	.	C	.	.	LowGQX	END=3328269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3328270	.	G	.	.	LowGQX	END=3329066	GT	./.
chr1	3329067	.	C	.	.	LowGQX	END=3329091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3329092	.	C	.	.	LowGQX	.	GT	./.
chr1	3329093	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3329094	.	A	.	.	LowGQX	.	GT	./.
chr1	3329095	.	G	.	.	LowGQX	END=3329097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3329098	.	C	.	.	LowGQX	.	GT	./.
chr1	3329099	.	A	.	.	LowGQX	END=3329107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3329108	.	A	.	.	LowGQX	.	GT	./.
chr1	3329109	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3329110	.	G	.	.	LowGQX	END=3329111	GT	./.
chr1	3329112	.	C	.	.	LowGQX	END=3329115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3329116	.	C	.	.	LowGQX	END=3329117	GT	./.
chr1	3329118	.	T	.	.	LowGQX	END=3329124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3329125	.	G	.	.	LowGQX	.	GT	./.
chr1	3329126	.	C	.	.	LowGQX	END=3329132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3329133	.	G	.	.	LowGQX	.	GT	./.
chr1	3329134	.	C	.	.	LowGQX	END=3329175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3329176	.	G	.	.	LowGQX	.	GT	./.
chr1	3329177	.	A	.	.	LowGQX	END=3329215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3329216	.	G	.	.	LowGQX	.	GT	./.
chr1	3329217	.	G	.	.	LowGQX	END=3329219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3329220	.	G	.	.	LowGQX	.	GT	./.
chr1	3329221	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3329222	.	G	.	.	LowGQX	.	GT	./.
chr1	3329223	.	A	.	.	LowGQX	END=3329233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3329234	.	A	.	.	LowGQX	.	GT	./.
chr1	3329235	.	A	.	.	LowGQX	END=3329236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3329237	.	C	.	.	LowGQX	.	GT	./.
chr1	3329238	.	A	.	.	LowGQX	END=3329240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3329241	.	T	.	.	LowGQX	.	GT	./.
chr1	3329242	.	C	.	.	LowGQX	END=3329255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3329256	.	A	.	.	LowGQX	.	GT	./.
chr1	3329257	.	G	.	.	LowGQX	END=3329269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3329270	.	G	.	.	LowGQX	.	GT	./.
chr1	3329271	.	A	.	.	LowGQX	END=3329286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3329287	.	G	.	.	LowGQX	END=3329331	GT	./.
chr1	3329332	.	G	.	.	LowGQX	END=3329366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3331119	.	T	.	.	LowGQX	END=3331218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3334330	.	C	.	.	LowGQX	END=3334580	GT	./.
chr1	3335220	.	C	.	.	LowGQX	END=3335319	GT	./.
chr1	3342143	.	A	.	.	LowGQX	END=3342316	GT	./.
chr1	3342613	.	A	.	.	LowGQX	END=3342791	GT	./.
chr1	3347434	.	A	.	.	LowGQX	END=3347674	GT	./.
chr1	3348528	.	A	.	.	LowGQX	END=3348534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348535	.	C	.	.	LowGQX	.	GT	./.
chr1	3348536	.	T	.	.	LowGQX	END=3348544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348545	.	C	.	.	LowGQX	.	GT	./.
chr1	3348546	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348547	.	A	.	.	LowGQX	.	GT	./.
chr1	3348548	.	A	.	.	LowGQX	END=3348554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348555	.	C	.	.	LowGQX	.	GT	./.
chr1	3348556	.	T	.	.	LowGQX	END=3348558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348559	.	T	.	.	LowGQX	END=3348560	GT	./.
chr1	3348561	.	G	.	.	LowGQX	END=3348566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348567	.	G	.	.	LowGQX	END=3348568	GT	./.
chr1	3348569	.	G	.	.	LowGQX	END=3348572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348573	.	A	.	.	LowGQX	.	GT	./.
chr1	3348574	.	T	.	.	LowGQX	END=3348575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348576	.	C	.	.	LowGQX	END=3348577	GT	./.
chr1	3348578	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348579	.	A	.	.	LowGQX	.	GT	./.
chr1	3348580	.	C	.	.	LowGQX	END=3348588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348589	.	A	.	.	LowGQX	.	GT	./.
chr1	3348590	.	G	.	.	LowGQX	END=3348598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348599	.	C	.	.	LowGQX	.	GT	./.
chr1	3348600	.	C	.	.	LowGQX	END=3348605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348606	.	A	.	.	LowGQX	END=3348607	GT	./.
chr1	3348608	.	A	.	.	LowGQX	END=3348615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348616	.	A	.	.	LowGQX	.	GT	./.
chr1	3348617	.	G	.	.	LowGQX	END=3348618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348619	.	A	.	.	LowGQX	.	GT	./.
chr1	3348620	.	A	.	.	LowGQX	END=3348621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348622	.	C	.	.	LowGQX	END=3348623	GT	./.
chr1	3348624	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348625	.	T	.	.	LowGQX	.	GT	./.
chr1	3348626	.	T	.	.	LowGQX	END=3348627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348628	.	A	.	.	LowGQX	.	GT	./.
chr1	3348629	.	A	.	.	LowGQX	END=3348630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348631	.	T	.	.	LowGQX	END=3348634	GT	./.
chr1	3348635	.	A	.	.	LowGQX	END=3348636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348637	.	A	.	.	LowGQX	.	GT	./.
chr1	3348638	.	T	.	.	LowGQX	END=3348642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348643	.	T	.	.	LowGQX	.	GT	./.
chr1	3348644	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348645	.	A	.	.	LowGQX	END=3348647	GT	./.
chr1	3348648	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348649	.	C	.	.	LowGQX	END=3348652	GT	./.
chr1	3348653	.	C	.	.	LowGQX	END=3348657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348658	.	A	.	.	LowGQX	.	GT	./.
chr1	3348659	.	T	.	.	LowGQX	END=3348660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3348661	.	C	.	.	LowGQX	END=3348706	GT	./.
chr1	3350239	.	A	.	.	LowGQX	END=3350290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3350291	.	C	.	.	LowGQX	END=3350354	GT	./.
chr1	3350355	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3350356	.	A	.	.	LowGQX	.	GT	./.
chr1	3350357	.	C	.	.	LowGQX	END=3350359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3350360	.	C	.	.	LowGQX	END=3350365	GT	./.
chr1	3350366	.	C	.	.	LowGQX	END=3350368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3350369	.	C	.	.	LowGQX	.	GT	./.
chr1	3350370	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3350371	.	T	.	.	LowGQX	.	GT	./.
chr1	3350372	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3350373	.	T	.	.	LowGQX	END=3350375	GT	./.
chr1	3350376	.	C	.	.	LowGQX	END=3350377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3379648	.	C	.	.	LowGQX	END=3379706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3379707	.	A	.	.	LowGQX	.	GT	./.
chr1	3379708	.	C	.	.	LowGQX	END=3379712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3379713	.	A	.	.	LowGQX	.	GT	./.
chr1	3379714	.	G	.	.	LowGQX	END=3379740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3379741	.	A	.	.	LowGQX	.	GT	./.
chr1	3379742	.	G	.	.	LowGQX	END=3379773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3379774	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	3379775	.	C	.	.	LowGQX	END=3379787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3379788	.	A	.	.	LowGQX	.	GT	./.
chr1	3379789	.	T	.	.	LowGQX	END=3379815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3379816	.	A	.	.	LowGQX	.	GT	./.
chr1	3379817	.	C	.	.	LowGQX	END=3379856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3379857	.	C	.	.	LowGQX	END=3379859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	3379860	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	3379861	.	C	.	.	LowGQX	END=3379892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	3379893	.	A	.	.	LowGQX	END=3379909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	3379910	.	C	.	.	LowGQX	END=3379921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	3379922	.	A	.	.	LowGQX	END=3380056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3380057	.	G	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	3380058	.	T	.	.	LowGQX	END=3380168	GT	./.
chr1	3380169	.	G	.	.	LowGQX	END=3380204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3380205	.	A	.	.	LowGQX	.	GT	./.
chr1	3380206	.	G	.	.	LowGQX	END=3380236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3382631	.	C	.	.	LowGQX	END=3382784	GT	./.
chr1	3383731	.	G	.	.	LowGQX	END=3383751	GT	./.
chr1	3383752	.	A	.	.	LowGQX	END=3383844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3383845	.	A	.	.	LowGQX	.	GT	./.
chr1	3383846	.	C	.	.	LowGQX	END=3383865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3383866	.	C	.	.	LowGQX	END=3383867	GT	./.
chr1	3383868	.	G	.	.	LowGQX	END=3383897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3383898	.	A	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	3383899	.	G	.	.	LowGQX	END=3383901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3385422	.	T	.	.	LowGQX	END=3385521	GT	./.
chr1	3385996	.	G	.	.	LowGQX	END=3386093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3386094	.	T	.	.	LowGQX	.	GT	./.
chr1	3386095	.	G	.	.	LowGQX	END=3386153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3386154	.	A	.	.	LowGQX	END=3386159	GT	./.
chr1	3388190	.	G	.	.	LowGQX	END=3388355	GT	./.
chr1	3389640	.	A	.	.	LowGQX	END=3389796	GT	./.
chr1	3389955	.	A	.	.	LowGQX	END=3390212	GT	./.
chr1	3391260	.	T	.	.	LowGQX	END=3391359	GT	./.
chr1	3392531	.	C	.	.	LowGQX	END=3392630	GT	./.
chr1	3394437	.	A	.	.	LowGQX	END=3394592	GT	./.
chr1	3394986	.	A	.	.	LowGQX	END=3395178	GT	./.
chr1	3396068	.	C	.	.	LowGQX	END=3396167	GT	./.
chr1	3396374	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3396375	.	G	.	.	LowGQX	.	GT	./.
chr1	3396376	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3396377	.	C	.	.	LowGQX	.	GT	./.
chr1	3396378	.	C	.	.	LowGQX	END=3396379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3396380	.	G	.	.	LowGQX	END=3396381	GT	./.
chr1	3396382	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3396383	.	C	.	.	LowGQX	.	GT	./.
chr1	3396384	.	C	.	.	LowGQX	END=3396454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3396455	.	C	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	3396456	.	C	.	.	LowGQX	END=3396479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	3397010	.	A	.	.	LowGQX	END=3397153	GT	./.
chr1	3407020	.	C	.	.	LowGQX	END=3407172	GT	./.
chr1	3407390	.	G	.	.	LowGQX	END=3407471	GT	./.
chr1	3407472	.	T	.	.	LowGQX	END=3407549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3409201	.	A	.	.	LowGQX	END=3409323	GT	./.
chr1	3409324	.	T	.	.	LowGQX	END=3409333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3410333	.	A	.	.	LowGQX	END=3410465	GT	./.
chr1	3410518	.	G	.	.	LowGQX	END=3410690	GT	./.
chr1	3410933	.	A	.	.	LowGQX	END=3411065	GT	./.
chr1	3411144	.	G	.	.	LowGQX	END=3411307	GT	./.
chr1	3412421	.	C	.	.	LowGQX	END=3412584	GT	./.
chr1	3413177	.	C	.	.	LowGQX	END=3413276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	3413277	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	3413278	.	T	.	.	LowGQX	END=3413292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3413293	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3413294	.	T	.	.	LowGQX	END=3413297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3413298	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3413299	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3413300	.	A	.	.	LowGQX	.	GT	./.
chr1	3413301	.	C	.	.	LowGQX	END=3413302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3413303	.	C	.	.	LowGQX	END=3413304	GT	./.
chr1	3413305	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3413306	.	A	.	.	LowGQX	.	GT	./.
chr1	3413307	.	C	.	.	LowGQX	END=3413310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3413311	.	T	.	.	LowGQX	.	GT	./.
chr1	3413312	.	G	.	.	LowGQX	END=3413313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3413314	.	T	.	.	LowGQX	.	GT	./.
chr1	3413315	.	C	.	.	LowGQX	END=3413342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3413343	.	A	.	.	LowGQX	END=3413344	GT	./.
chr1	3413345	.	A	.	.	LowGQX	END=3413349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3413510	.	G	.	.	LowGQX	END=3413511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3413512	.	A	.	.	LowGQX	.	GT	./.
chr1	3413513	.	G	.	.	LowGQX	END=3413521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3413522	.	A	.	.	LowGQX	.	GT	./.
chr1	3413523	.	G	.	.	LowGQX	END=3413527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3413528	.	T	.	.	LowGQX	.	GT	./.
chr1	3413529	.	G	.	.	LowGQX	END=3413531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3413532	.	T	.	.	LowGQX	.	GT	./.
chr1	3413533	.	G	.	.	LowGQX	END=3413536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3413537	.	A	.	.	LowGQX	.	GT	./.
chr1	3413538	.	C	.	.	LowGQX	END=3413545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3413546	.	A	.	.	LowGQX	.	GT	./.
chr1	3413547	.	C	.	.	LowGQX	END=3413560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3413561	.	A	.	.	LowGQX	.	GT	./.
chr1	3413562	.	G	.	.	LowGQX	END=3413571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3413572	.	T	.	.	LowGQX	.	GT	./.
chr1	3413573	.	G	.	.	LowGQX	END=3413574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3413575	.	T	.	.	LowGQX	.	GT	./.
chr1	3413576	.	A	.	.	LowGQX	END=3413644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3413645	.	T	.	.	LowGQX	END=3413685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	3413764	.	C	.	.	LowGQX	END=3413788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3413789	.	G	.	.	LowGQX	END=3413974	GT	./.
chr1	3414055	.	C	.	.	LowGQX	END=3414223	GT	./.
chr1	3414893	.	C	.	.	LowGQX	END=3415065	GT	./.
chr1	3415260	.	A	.	.	LowGQX	END=3415261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3415262	.	C	.	.	LowGQX	.	GT	./.
chr1	3415263	.	C	.	.	LowGQX	END=3415272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3415273	.	G	.	.	LowGQX	.	GT	./.
chr1	3415274	.	C	.	.	LowGQX	END=3415281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3415282	.	G	.	.	LowGQX	END=3415283	GT	./.
chr1	3415284	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3415285	.	C	.	.	LowGQX	.	GT	./.
chr1	3415286	.	A	.	.	LowGQX	END=3415288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3415289	.	C	.	.	LowGQX	.	GT	./.
chr1	3415290	.	C	.	.	LowGQX	END=3415291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3415292	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3415293	.	T	.	.	LowGQX	END=3415294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3415295	.	G	.	.	LowGQX	.	GT	./.
chr1	3415296	.	G	.	.	LowGQX	END=3415304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3415305	.	G	.	.	LowGQX	.	GT	./.
chr1	3415306	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3415307	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3415308	.	G	.	.	LowGQX	END=3415313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3415314	.	G	.	.	LowGQX	.	GT	./.
chr1	3415315	.	A	.	.	LowGQX	END=3415317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3415318	.	G	.	.	LowGQX	.	GT	./.
chr1	3415319	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3415320	.	G	.	.	LowGQX	.	GT	./.
chr1	3415321	.	T	.	.	LowGQX	END=3415328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3415329	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3415330	.	C	.	.	LowGQX	.	GT	./.
chr1	3415331	.	C	.	.	LowGQX	END=3415333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3415334	.	C	.	.	LowGQX	.	GT	./.
chr1	3415335	.	G	.	.	LowGQX	END=3415338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3415339	.	T	.	.	LowGQX	.	GT	./.
chr1	3415340	.	G	.	.	LowGQX	END=3415341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3415342	.	C	.	.	LowGQX	.	GT	./.
chr1	3415343	.	A	.	.	LowGQX	END=3415349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3415350	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3415351	.	G	.	.	LowGQX	.	GT	./.
chr1	3415352	.	A	.	.	LowGQX	END=3415374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3415375	.	A	.	.	LowGQX	END=3415392	GT	./.
chr1	3415660	.	C	.	.	LowGQX	END=3415767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3415768	.	A	.	.	LowGQX	.	GT	./.
chr1	3415769	.	G	.	.	LowGQX	END=3415789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3415790	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	3415791	.	G	.	.	LowGQX	END=3415799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3415800	.	C	.	.	LowGQX	.	GT	./.
chr1	3415801	.	A	.	.	LowGQX	END=3415804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3415805	.	G	.	.	LowGQX	.	GT	./.
chr1	3415806	.	T	.	.	LowGQX	END=3415832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3416150	.	A	.	.	LowGQX	END=3416282	GT	./.
chr1	3416358	.	A	.	.	LowGQX	END=3416490	GT	./.
chr1	3417195	.	A	.	.	LowGQX	END=3417198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3417199	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3417200	.	G	.	.	LowGQX	END=3417201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3417202	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3417203	.	C	.	.	LowGQX	END=3417214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3417215	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3417216	.	C	.	.	LowGQX	END=3417218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3417219	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3417220	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	3417221	.	A	.	.	LowGQX	.	GT	./.
chr1	3417222	.	G	.	.	LowGQX	END=3417230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3417231	.	A	.	.	LowGQX	END=3417314	GT	./.
chr1	3417315	.	C	.	.	LowGQX	END=3417330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3417497	.	T	.	.	LowGQX	END=3417557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3417558	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	3417559	.	G	.	.	LowGQX	END=3417583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3417584	.	C	.	.	LowGQX	END=3417660	GT	./.
chr1	3417699	.	T	.	.	LowGQX	END=3417874	GT	./.
chr1	3418308	.	T	.	.	LowGQX	END=3418321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	3418322	.	C	A	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=-0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr1	3418323	.	C	.	.	LowGQX	END=3418366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3418367	.	A	.	.	LowGQX	.	GT	./.
chr1	3418368	.	C	.	.	LowGQX	END=3418385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3418386	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	3418387	.	C	.	.	LowGQX	END=3418393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3418394	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3418395	.	C	.	.	LowGQX	END=3418408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3418409	.	C	.	.	LowGQX	END=3418527	GT	./.
chr1	3421770	.	A	.	.	LowGQX	END=3421820	GT	./.
chr1	3421821	.	C	.	.	LowGQX	END=3421908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3421984	.	A	.	.	LowGQX	END=3422058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3422059	.	G	.	.	LowGQX	END=3422122	GT	./.
chr1	3422670	.	A	.	.	LowGQX	END=3422802	GT	./.
chr1	3424317	.	C	.	.	LowGQX	END=3424489	GT	./.
chr1	3425120	.	A	.	.	LowGQX	END=3425255	GT	./.
chr1	3425626	.	G	.	.	LowGQX	END=3425827	GT	./.
chr1	3425828	.	C	.	.	LowGQX	END=3425836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3426432	.	A	.	.	LowGQX	END=3426601	GT	./.
chr1	3427345	.	A	.	.	LowGQX	END=3427468	GT	./.
chr1	3428112	.	A	.	.	LowGQX	END=3428116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3428117	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3428118	.	G	.	.	LowGQX	END=3428159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3428160	.	T	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	3428161	.	G	.	.	LowGQX	END=3428182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3428183	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3428184	.	G	.	.	LowGQX	END=3428212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3428213	.	T	.	.	LowGQX	.	GT	./.
chr1	3428214	.	G	.	.	LowGQX	END=3428234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3428235	.	G	.	.	LowGQX	END=3428253	GT	./.
chr1	3428518	.	A	.	.	LowGQX	END=3428657	GT	./.
chr1	3428658	.	A	.	.	LowGQX	END=3428661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3428662	.	T	.	.	LowGQX	END=3428663	GT	./.
chr1	3428664	.	G	.	.	LowGQX	END=3428666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3428667	.	C	.	.	LowGQX	.	GT	./.
chr1	3428668	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3428669	.	G	.	.	LowGQX	.	GT	./.
chr1	3428670	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3428671	.	C	.	.	LowGQX	.	GT	./.
chr1	3428672	.	C	.	.	LowGQX	END=3428673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3428674	.	G	.	.	LowGQX	.	GT	./.
chr1	3428675	.	C	.	.	LowGQX	END=3428679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3428680	.	C	.	.	LowGQX	END=3428681	GT	./.
chr1	3428682	.	T	.	.	LowGQX	END=3428683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3428684	.	C	.	.	LowGQX	END=3428685	GT	./.
chr1	3428686	.	T	.	.	LowGQX	END=3428687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3428688	.	C	.	.	LowGQX	.	GT	./.
chr1	3428689	.	A	.	.	LowGQX	END=3428692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3428693	.	C	.	.	LowGQX	.	GT	./.
chr1	3428694	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3431112	.	A	.	.	LowGQX	.	GT	./.
chr1	3431113	.	C	.	.	LowGQX	END=3431118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3431119	.	C	.	.	LowGQX	END=3431120	GT	./.
chr1	3431121	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3431122	.	G	.	.	LowGQX	.	GT	./.
chr1	3431123	.	C	.	.	LowGQX	END=3431124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3431125	.	T	.	.	LowGQX	.	GT	./.
chr1	3431126	.	T	.	.	LowGQX	END=3431146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3431147	.	A	.	.	LowGQX	.	GT	./.
chr1	3431148	.	G	.	.	LowGQX	END=3431183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3431184	.	C	.	.	LowGQX	END=3431238	GT	./.
chr1	3431964	.	A	.	.	LowGQX	END=3432093	GT	./.
chr1	3440686	.	A	.	.	LowGQX	END=3440812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3447613	.	C	.	.	LowGQX	END=3447641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3447642	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3447643	.	C	.	.	LowGQX	END=3447665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3447666	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3447667	.	A	.	.	LowGQX	END=3447707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3447708	.	C	.	.	LowGQX	END=3447809	GT	./.
chr1	3477198	.	T	.	.	LowGQX	END=3477408	GT	./.
chr1	3496336	.	T	.	.	LowGQX	END=3496357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496358	.	A	.	.	LowGQX	END=3496359	GT	./.
chr1	3496360	.	G	.	.	LowGQX	END=3496376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496377	.	G	.	.	LowGQX	.	GT	./.
chr1	3496378	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496379	.	C	.	.	LowGQX	END=3496409	GT	./.
chr1	3496410	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496411	.	G	.	.	LowGQX	.	GT	./.
chr1	3496412	.	A	.	.	LowGQX	END=3496414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496415	.	C	.	.	LowGQX	.	GT	./.
chr1	3496416	.	C	.	.	LowGQX	END=3496426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496427	.	T	.	.	LowGQX	.	GT	./.
chr1	3496428	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496429	.	A	.	.	LowGQX	END=3496432	GT	./.
chr1	3496433	.	G	.	.	LowGQX	END=3496434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496435	.	C	.	.	LowGQX	END=3496436	GT	./.
chr1	3496437	.	G	.	.	LowGQX	END=3496438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496439	.	G	.	.	LowGQX	.	GT	./.
chr1	3496440	.	C	.	.	LowGQX	END=3496441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496442	.	G	.	.	LowGQX	.	GT	./.
chr1	3496443	.	A	.	.	LowGQX	END=3496446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496447	.	T	.	.	LowGQX	.	GT	./.
chr1	3496448	.	G	.	.	LowGQX	END=3496455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496456	.	A	.	.	LowGQX	.	GT	./.
chr1	3496457	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496458	.	G	.	.	LowGQX	.	GT	./.
chr1	3496459	.	G	.	.	LowGQX	END=3496464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496465	.	G	.	.	LowGQX	END=3496467	GT	./.
chr1	3496468	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496469	.	A	.	.	LowGQX	.	GT	./.
chr1	3496470	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496471	.	A	.	.	LowGQX	.	GT	./.
chr1	3496472	.	C	.	.	LowGQX	END=3496474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496475	.	A	.	.	LowGQX	.	GT	./.
chr1	3496476	.	G	.	.	LowGQX	END=3496477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496478	.	C	.	.	LowGQX	END=3496479	GT	./.
chr1	3496480	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496481	.	G	.	.	LowGQX	.	GT	./.
chr1	3496482	.	C	.	.	LowGQX	END=3496486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496487	.	C	.	.	LowGQX	.	GT	./.
chr1	3496488	.	A	.	.	LowGQX	END=3496489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496490	.	T	.	.	LowGQX	.	GT	./.
chr1	3496491	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496492	.	A	.	.	LowGQX	END=3496493	GT	./.
chr1	3496494	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496495	.	T	.	.	LowGQX	.	GT	./.
chr1	3496496	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496497	.	C	.	.	LowGQX	.	GT	./.
chr1	3496498	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496499	.	G	.	.	LowGQX	.	GT	./.
chr1	3496500	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496501	.	G	.	.	LowGQX	.	GT	./.
chr1	3496502	.	G	.	.	LowGQX	END=3496504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496505	.	A	.	.	LowGQX	.	GT	./.
chr1	3496506	.	G	.	.	LowGQX	END=3496507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496508	.	A	.	.	LowGQX	END=3496509	GT	./.
chr1	3496510	.	A	.	.	LowGQX	END=3496514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496515	.	C	.	.	LowGQX	.	GT	./.
chr1	3496516	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496517	.	G	.	.	LowGQX	END=3496518	GT	./.
chr1	3496519	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496520	.	A	.	.	LowGQX	END=3496523	GT	./.
chr1	3496524	.	G	.	.	LowGQX	END=3496525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496526	.	G	.	.	LowGQX	.	GT	./.
chr1	3496527	.	C	.	.	LowGQX	END=3496528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496529	.	A	.	.	LowGQX	.	GT	./.
chr1	3496530	.	G	.	.	LowGQX	END=3496540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496541	.	G	.	.	LowGQX	.	GT	./.
chr1	3496542	.	C	.	.	LowGQX	END=3496545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3496546	.	G	.	.	LowGQX	.	GT	./.
chr1	3511900	.	A	.	.	LowGQX	END=3512013	GT	./.
chr1	3518988	.	T	.	.	LowGQX	END=3519166	GT	./.
chr1	3527669	.	A	.	.	LowGQX	END=3527834	GT	./.
chr1	3541564	.	C	.	.	LowGQX	END=3541903	GT	./.
chr1	3541924	.	C	.	.	LowGQX	END=3542077	GT	./.
chr1	3542078	.	G	.	.	LowGQX	END=3542083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3542275	.	A	.	.	LowGQX	.	GT	./.
chr1	3542276	.	G	.	.	LowGQX	END=3542279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3542280	.	G	.	.	LowGQX	.	GT	./.
chr1	3542281	.	G	.	.	LowGQX	END=3542455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3544062	.	A	.	.	LowGQX	END=3544219	GT	./.
chr1	3544971	.	A	.	.	LowGQX	END=3545169	GT	./.
chr1	3547537	.	T	.	.	LowGQX	END=3547683	GT	./.
chr1	3547961	.	T	.	.	LowGQX	END=3548059	GT	./.
chr1	3548060	.	C	.	.	LowGQX	END=3548128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3548129	.	A	.	.	LowGQX	.	GT	./.
chr1	3548130	.	C	.	.	LowGQX	END=3548135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3548136	.	T	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	3548137	.	G	.	.	LowGQX	END=3548163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3548164	.	A	.	.	LowGQX	.	GT	./.
chr1	3548165	.	C	.	.	LowGQX	END=3548223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3548775	.	A	.	.	LowGQX	END=3548943	GT	./.
chr1	3549905	.	C	.	.	LowGQX	END=3549951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3549952	.	T	.	.	LowGQX	END=3550069	GT	./.
chr1	3551550	.	T	.	.	LowGQX	END=3551649	GT	./.
chr1	3551722	.	A	.	.	LowGQX	END=3551860	GT	./.
chr1	3552502	.	T	.	.	LowGQX	END=3552601	GT	./.
chr1	3553436	.	T	.	.	LowGQX	END=3553664	GT	./.
chr1	3555242	.	T	.	.	LowGQX	END=3555400	GT	./.
chr1	3563228	.	A	.	.	LowGQX	END=3563375	GT	./.
chr1	3563376	.	G	.	.	LowGQX	END=3563397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3563970	.	A	.	.	LowGQX	END=3563985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3563986	.	G	.	.	LowGQX	.	GT	./.
chr1	3563987	.	C	.	.	LowGQX	END=3564070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3564071	.	G	.	.	LowGQX	END=3564126	GT	./.
chr1	3566423	.	C	.	.	LowGQX	END=3566579	GT	./.
chr1	3598913	.	A	.	.	PASS	END=3599012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	3599622	.	A	.	.	PASS	END=3599719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	3599720	.	G	.	.	PASS	END=3599746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	3607439	.	C	.	.	PASS	END=3607466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	3607467	.	A	.	.	PASS	END=3607519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	3607520	.	G	A	726.15	PASS	BaseQRankSum=-1.118;DP=95;Dels=0.00;FS=5.773;HRun=0;HaplotypeScore=18.0844;MQ=60;MQ0=0;MQRankSum=1.049;QD=7.64;ReadPosRankSum=2.512;SB=-441.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:50,44:95:99:756,0,1200:60:99:0.468
chr1	3607521	.	C	.	.	PASS	END=3607538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	3624111	.	A	.	.	PASS	END=3624129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	3624130	.	G	.	.	PASS	END=3624153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	3624154	.	C	.	.	PASS	END=3624229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	3624230	.	C	.	.	PASS	END=3624324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	3624325	.	G	.	.	PASS	END=3624344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	3624345	.	C	.	.	PASS	END=3624376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	3638583	.	A	.	.	PASS	END=3638620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	3638621	.	G	.	.	PASS	END=3638673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	3638674	.	C	T	7482.51	PASS	BaseQRankSum=1.546;DP=271;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=72.2893;MQ=60;MQ0=0;MQRankSum=-0.179;QD=27.61;ReadPosRankSum=1.719;SB=-3919.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,260:271:99:7483,572,0:60:99:0.996
chr1	3638675	.	G	.	.	PASS	END=3638771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	3638772	.	G	.	.	PASS	END=3638782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	3639916	.	A	.	.	PASS	END=3639994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	3639995	.	G	.	.	PASS	END=3640027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	3640028	.	C	.	.	PASS	END=3640035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	3643677	.	A	.	.	PASS	END=3643774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	3643775	.	C	.	.	PASS	END=3643790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	3644150	.	G	.	.	PASS	END=3644336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	3644688	.	T	.	.	PASS	END=3644784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	3644785	.	A	.	.	PASS	END=3644787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	3645889	.	A	.	.	PASS	END=3645988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	3645989	.	G	.	.	PASS	END=3646016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	3646141	.	A	.	.	PASS	END=3646143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	3646144	.	A	.	.	PASS	END=3646154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	3646155	.	C	.	.	PASS	END=3646168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	3646169	.	C	.	.	PASS	END=3646179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	3646180	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:48:60
chr1	3646181	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:36:60
chr1	3646182	.	A	.	.	PASS	END=3646184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	3646185	.	A	.	.	PASS	END=3646191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	3646192	.	G	A	385.83	PASS	DP=14;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;QD=27.56;SB=-117.92	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,13:14:33.10:419,33,0:60:33:1.000
chr1	3646193	.	C	.	.	PASS	END=3646203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	3646204	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:36:60
chr1	3646205	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr1	3646206	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	3646207	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	3646208	.	G	.	.	PASS	END=3646209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	3646210	.	G	.	.	LowGQX	END=3646211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	3646212	.	C	.	.	PASS	END=3646213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	3646214	.	T	C	411.90	PASS	DP=12;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=34.32;SB=-179.20	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,12:12:36.11:445,36,0:60:36:1.000
chr1	3646215	.	G	.	.	PASS	END=3646235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	3646236	.	A	.	.	PASS	END=3646240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	3646562	.	A	.	.	PASS	END=3646678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	3646679	.	A	.	.	PASS	END=3646696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	3646697	.	A	.	.	PASS	END=3646714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	3647489	.	A	.	.	PASS	END=3647595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	3647596	.	C	.	.	PASS	END=3647631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	3648024	.	C	.	.	PASS	END=3648068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	3648069	.	C	.	.	PASS	END=3648100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	3648101	.	T	.	.	PASS	END=3648123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	3649309	.	A	.	.	PASS	END=3649334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	3649335	.	G	.	.	PASS	END=3649376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	3649377	.	A	.	.	PASS	END=3649540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	3649541	.	C	.	.	PASS	END=3649627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	3649628	.	G	.	.	PASS	END=3649645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	3659701	.	G	.	.	LowGQX	END=3659785	GT	./.
chr1	3659786	.	A	.	.	LowGQX	END=3659800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3662171	.	C	.	.	LowGQX	END=3662172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3662173	.	C	.	.	LowGQX	.	GT	./.
chr1	3662174	.	T	.	.	LowGQX	END=3662175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3662176	.	G	.	.	LowGQX	.	GT	./.
chr1	3662177	.	T	.	.	LowGQX	END=3662178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3662179	.	G	.	.	LowGQX	END=3662180	GT	./.
chr1	3662181	.	T	.	.	LowGQX	END=3662195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3662196	.	C	.	.	LowGQX	.	GT	./.
chr1	3662197	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3662198	.	T	.	.	LowGQX	.	GT	./.
chr1	3662199	.	C	.	.	LowGQX	END=3662201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3662202	.	G	.	.	LowGQX	END=3662204	GT	./.
chr1	3662205	.	C	.	.	LowGQX	END=3662206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3662207	.	C	.	.	LowGQX	.	GT	./.
chr1	3662208	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3662209	.	A	.	.	LowGQX	END=3662210	GT	./.
chr1	3662211	.	C	.	.	LowGQX	END=3662221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3662222	.	T	.	.	LowGQX	.	GT	./.
chr1	3662223	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3662224	.	G	.	.	LowGQX	END=3662231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:44
chr1	3662232	.	T	.	32.98	LowGQX	DP=2;MQ=44;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:44:3
chr1	3662233	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:44
chr1	3662234	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662235	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	3662236	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662237	.	A	.	.	LowGQX;LowMQ	END=3662240	GT	./.
chr1	3662241	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662242	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	3662243	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662244	.	A	.	.	LowGQX;LowMQ	END=3662245	GT	./.
chr1	3662246	.	G	.	.	LowGQX;LowMQ	END=3662247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662248	.	C	.	.	LowGQX;LowMQ	END=3662249	GT	./.
chr1	3662250	.	T	.	.	LowGQX;LowMQ	END=3662251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662252	.	C	.	.	LowGQX;LowMQ	END=3662256	GT	./.
chr1	3662257	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662258	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	3662259	.	T	.	.	LowGQX;LowMQ	END=3662262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662263	.	A	.	.	LowGQX;LowMQ	END=3662265	GT	./.
chr1	3662266	.	G	.	.	LowGQX;LowMQ	END=3662267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662268	.	T	.	.	LowGQX;LowMQ	END=3662269	GT	./.
chr1	3662270	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662271	.	T	.	.	LowGQX;LowMQ	END=3662273	GT	./.
chr1	3662274	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662275	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	3662276	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662277	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	3662278	.	C	.	.	LowGQX;LowMQ	END=3662279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662280	.	A	.	.	LowGQX;LowMQ	END=3662281	GT	./.
chr1	3662282	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662283	.	T	.	.	LowGQX;LowMQ	END=3662284	GT	./.
chr1	3662285	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662286	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	3662287	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662288	.	C	.	.	LowGQX;LowMQ	END=3662294	GT	./.
chr1	3662295	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662296	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	3662297	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662298	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	3662299	.	T	.	.	LowGQX;LowMQ	END=3662300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662301	.	T	.	.	LowGQX;LowMQ	END=3662308	GT	./.
chr1	3662309	.	C	.	8.05	LowGQX;LowMQ	DP=1;MQ=18;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.02:18:0
chr1	3662310	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662311	.	C	.	.	LowGQX;LowMQ	END=3662313	GT	./.
chr1	3662314	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662315	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	3662316	.	C	.	.	LowGQX;LowMQ	END=3662318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662319	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	3662320	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662321	.	C	.	.	LowGQX;LowMQ	END=3662322	GT	./.
chr1	3662323	.	G	.	.	LowGQX;LowMQ	END=3662324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662325	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	3662326	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662327	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	3662328	.	G	.	.	LowGQX;LowMQ	END=3662329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662330	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	3662331	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662332	.	G	.	.	LowGQX;LowMQ	END=3662333	GT	./.
chr1	3662334	.	C	.	.	LowGQX;LowMQ	END=3662335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662336	.	C	.	.	LowGQX;LowMQ	END=3662339	GT	./.
chr1	3662340	.	A	.	.	LowGQX;LowMQ	END=3662342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662343	.	C	.	.	LowGQX;LowMQ	END=3662344	GT	./.
chr1	3662345	.	C	.	.	LowGQX;LowMQ	END=3662353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662354	.	G	.	.	LowGQX;LowMQ	END=3662355	GT	./.
chr1	3662356	.	T	.	.	LowGQX;LowMQ	END=3662359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662360	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	3662361	.	A	.	.	LowGQX;LowMQ	END=3662363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:18
chr1	3662364	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	3662365	.	C	.	.	LowGQX	END=3662767	GT	./.
chr1	3669044	.	T	.	.	LowGQX	END=3669345	GT	./.
chr1	3669346	.	C	.	.	LowGQX	END=3669365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3670680	.	A	.	.	LowGQX	END=3670807	GT	./.
chr1	3672019	.	A	.	.	LowGQX	END=3672133	GT	./.
chr1	3673295	.	A	.	.	LowGQX	END=3673456	GT	./.
chr1	3677843	.	A	.	.	LowGQX	END=3677996	GT	./.
chr1	3679181	.	C	.	.	LowGQX	END=3679188	GT	./.
chr1	3679189	.	G	.	.	LowGQX	END=3679219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3679220	.	C	.	.	LowGQX	.	GT	./.
chr1	3679221	.	T	.	.	LowGQX	END=3679222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3679223	.	A	.	.	LowGQX	.	GT	./.
chr1	3679224	.	G	.	.	LowGQX	END=3679225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3679226	.	C	.	.	LowGQX	END=3679227	GT	./.
chr1	3679228	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3679229	.	C	.	.	LowGQX	.	GT	./.
chr1	3679230	.	T	.	.	LowGQX	END=3679243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3679244	.	A	.	.	LowGQX	.	GT	./.
chr1	3679245	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3679246	.	A	.	.	LowGQX	.	GT	./.
chr1	3679247	.	C	.	.	LowGQX	END=3679249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3679250	.	G	.	.	LowGQX	.	GT	./.
chr1	3679251	.	A	.	.	LowGQX	END=3679256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3679257	.	A	.	.	LowGQX	.	GT	./.
chr1	3679258	.	G	.	.	LowGQX	END=3679280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3679670	.	A	.	.	LowGQX	END=3679845	GT	./.
chr1	3679846	.	G	.	.	LowGQX	END=3679847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679848	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3679849	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	3679850	.	G	.	.	LowGQX	END=3679855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679856	.	G	.	.	LowGQX	.	GT	./.
chr1	3679857	.	G	.	.	LowGQX	END=3679863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679864	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3679865	.	A	.	.	LowGQX	END=3679867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679868	.	C	.	.	LowGQX	.	GT	./.
chr1	3679869	.	A	.	.	LowGQX	END=3679872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679873	.	G	.	.	LowGQX	.	GT	./.
chr1	3679874	.	A	.	.	LowGQX	END=3679876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679877	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3679878	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3679879	.	G	.	.	LowGQX	END=3679885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679886	.	C	.	32.37	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:2.68:60:3
chr1	3679887	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679888	.	G	.	.	LowGQX	.	GT	./.
chr1	3679889	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679890	.	G	.	.	LowGQX	.	GT	./.
chr1	3679891	.	G	.	.	LowGQX	END=3679899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679900	.	A	.	.	LowGQX	.	GT	./.
chr1	3679901	.	T	.	.	LowGQX	END=3679909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679910	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3679911	.	A	.	.	LowGQX	END=3679914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679915	.	G	.	.	LowGQX	.	GT	./.
chr1	3679916	.	C	.	.	LowGQX	END=3679917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679918	.	T	.	.	LowGQX	.	GT	./.
chr1	3679919	.	C	.	.	LowGQX	END=3679920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679921	.	T	.	.	LowGQX	.	GT	./.
chr1	3679922	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679923	.	C	.	.	LowGQX	.	GT	./.
chr1	3679924	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679925	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3679926	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3679927	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679928	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3679929	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679930	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3679931	.	A	.	.	LowGQX	END=3679934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679935	.	G	.	.	LowGQX	.	GT	./.
chr1	3679936	.	T	.	.	LowGQX	END=3679940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679941	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3679942	.	G	.	.	LowGQX	END=3679943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679944	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3679945	.	G	.	.	LowGQX	.	GT	./.
chr1	3679946	.	A	.	.	LowGQX	END=3679949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679950	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3679951	.	C	.	.	LowGQX	END=3679968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3679969	.	T	.	.	LowGQX	END=3680040	GT	./.
chr1	3680268	.	A	.	.	LowGQX	END=3680398	GT	./.
chr1	3680399	.	A	.	.	LowGQX	END=3680402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3683088	.	T	.	.	LowGQX	END=3683187	GT	./.
chr1	3683795	.	A	.	.	LowGQX	END=3683835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3683836	.	T	.	.	LowGQX	END=3683844	GT	./.
chr1	3683845	.	T	.	.	LowGQX	END=3683852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3683853	.	G	.	.	LowGQX	.	GT	./.
chr1	3683854	.	G	.	.	LowGQX	END=3684011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3686345	.	A	.	.	LowGQX	END=3686354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3686355	.	G	.	.	LowGQX	END=3686453	GT	./.
chr1	3687963	.	A	.	.	LowGQX	END=3687976	GT	./.
chr1	3687977	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3687978	.	A	.	.	LowGQX	.	GT	./.
chr1	3687979	.	G	.	.	LowGQX	END=3688016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3688017	.	T	.	.	LowGQX	.	GT	./.
chr1	3688018	.	C	.	.	LowGQX	END=3688032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3688033	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	3688034	.	C	.	.	LowGQX	END=3688039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	3688040	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	3688041	.	C	.	.	LowGQX	END=3688087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	3688088	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	3688089	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	3691937	.	C	.	.	LowGQX	END=3692001	GT	./.
chr1	3692002	.	G	.	.	LowGQX	END=3692051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3692358	.	G	.	.	LowGQX	.	GT	./.
chr1	3692359	.	G	.	.	LowGQX	END=3692360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3692361	.	T	.	.	LowGQX	END=3692363	GT	./.
chr1	3692364	.	C	.	.	LowGQX	END=3692485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3697650	.	C	.	.	LowGQX	END=3697902	GT	./.
chr1	3698071	.	C	.	.	LowGQX	END=3698170	GT	./.
chr1	3699223	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3699224	.	C	.	.	LowGQX	.	GT	./.
chr1	3699225	.	C	.	.	LowGQX	END=3699231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3699232	.	T	.	.	LowGQX	END=3699329	GT	./.
chr1	3700558	.	A	.	.	LowGQX	END=3700677	GT	./.
chr1	3701599	.	T	.	.	LowGQX	END=3701769	GT	./.
chr1	3703411	.	A	.	.	LowGQX	END=3703474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3703475	.	C	.	.	LowGQX	END=3703811	GT	./.
chr1	3703812	.	C	.	.	LowGQX	END=3703815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3703816	.	G	.	.	LowGQX	.	GT	./.
chr1	3703817	.	G	.	.	LowGQX	END=3703821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3703822	.	T	.	.	LowGQX	.	GT	./.
chr1	3703823	.	C	.	.	LowGQX	END=3703825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3703826	.	C	.	.	LowGQX	.	GT	./.
chr1	3703827	.	A	.	.	LowGQX	END=3703830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3703831	.	T	.	.	LowGQX	.	GT	./.
chr1	3703832	.	C	.	.	LowGQX	END=3703835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3703836	.	A	.	.	LowGQX	END=3703837	GT	./.
chr1	3703838	.	G	.	.	LowGQX	END=3703851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3703852	.	T	.	.	LowGQX	.	GT	./.
chr1	3703853	.	G	.	.	LowGQX	END=3703857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3703858	.	T	.	.	LowGQX	.	GT	./.
chr1	3703859	.	T	.	.	LowGQX	END=3703865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3703866	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3703867	.	T	.	.	LowGQX	.	GT	./.
chr1	3703868	.	C	.	.	LowGQX	END=3703876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3712424	.	A	.	.	LowGQX	END=3713042	GT	./.
chr1	3731923	.	C	.	.	LowGQX	END=3732083	GT	./.
chr1	3732827	.	G	.	.	LowGQX	END=3732936	GT	./.
chr1	3739722	.	T	.	.	LowGQX	END=3739821	GT	./.
chr1	3739986	.	A	.	.	LowGQX	END=3740128	GT	./.
chr1	3742320	.	A	.	.	LowGQX	END=3742432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3742918	.	A	.	.	LowGQX	END=3743017	GT	./.
chr1	3743241	.	A	.	.	LowGQX	END=3743252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3743253	.	A	.	.	LowGQX	.	GT	./.
chr1	3743254	.	C	.	.	LowGQX	END=3743288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3743289	.	A	.	.	LowGQX	.	GT	./.
chr1	3743290	.	C	.	.	LowGQX	END=3743296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3743297	.	A	.	.	LowGQX	.	GT	./.
chr1	3743298	.	C	.	.	LowGQX	END=3743320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3743321	.	A	.	.	LowGQX	END=3743340	GT	./.
chr1	3745824	.	T	.	.	LowGQX	END=3745976	GT	./.
chr1	3746353	.	A	.	.	LowGQX	END=3746524	GT	./.
chr1	3746525	.	C	.	.	LowGQX	END=3746532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3746533	.	A	.	.	LowGQX	.	GT	./.
chr1	3746534	.	C	.	.	LowGQX	END=3746549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3746550	.	A	.	.	LowGQX	END=3746551	GT	./.
chr1	3746552	.	T	.	.	LowGQX	END=3746563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3747608	.	A	.	.	LowGQX	END=3747788	GT	./.
chr1	3750420	.	T	.	.	LowGQX	END=3750507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3750508	.	A	.	.	LowGQX	END=3750601	GT	./.
chr1	3751487	.	A	.	.	LowGQX	END=3751658	GT	./.
chr1	3753057	.	A	.	.	LowGQX	END=3753258	GT	./.
chr1	3753854	.	A	.	.	LowGQX	END=3753866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3753867	.	G	.	.	LowGQX	.	GT	./.
chr1	3753868	.	A	.	.	LowGQX	END=3753870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3753871	.	A	.	.	LowGQX	.	GT	./.
chr1	3753872	.	G	.	.	LowGQX	END=3753875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3753876	.	C	.	.	LowGQX	.	GT	./.
chr1	3753877	.	T	.	.	LowGQX	END=3753881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3753882	.	C	.	.	LowGQX	.	GT	./.
chr1	3753883	.	A	.	.	LowGQX	END=3753888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3753889	.	T	.	.	LowGQX	.	GT	./.
chr1	3753890	.	A	.	.	LowGQX	END=3753896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3753897	.	C	.	.	LowGQX	.	GT	./.
chr1	3753898	.	T	.	.	LowGQX	END=3753915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3753916	.	A	.	.	LowGQX	END=3753917	GT	./.
chr1	3753918	.	A	.	.	LowGQX	END=3753919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3753920	.	A	.	.	LowGQX	.	GT	./.
chr1	3753921	.	T	.	.	LowGQX	END=3753926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3753927	.	G	.	.	LowGQX	.	GT	./.
chr1	3753928	.	A	.	.	LowGQX	END=3753929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3753930	.	A	.	.	LowGQX	END=3753933	GT	./.
chr1	3753934	.	T	.	.	LowGQX	END=3753940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3753941	.	G	.	.	LowGQX	END=3754085	GT	./.
chr1	3755526	.	A	.	.	LowGQX	END=3755615	GT	./.
chr1	3755616	.	A	.	.	LowGQX	END=3755685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3756170	.	A	.	.	LowGQX	END=3756342	GT	./.
chr1	3759718	.	T	.	.	LowGQX	END=3759887	GT	./.
chr1	3761460	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3761461	.	G	.	.	LowGQX	.	GT	./.
chr1	3761462	.	G	.	.	LowGQX	END=3761509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3761510	.	T	.	.	LowGQX	.	GT	./.
chr1	3761511	.	G	.	.	LowGQX	END=3761559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3761835	.	A	.	.	LowGQX	END=3761934	GT	./.
chr1	3764037	.	A	.	.	LowGQX	END=3764040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3764041	.	G	.	.	LowGQX	END=3764187	GT	./.
chr1	3764188	.	A	.	.	LowGQX	END=3764215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3765150	.	A	.	.	LowGQX	END=3765274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3765275	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3765276	.	T	.	.	LowGQX	END=3765347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3768857	.	A	.	.	LowGQX	END=3768973	GT	./.
chr1	3774166	.	C	.	.	LowGQX	END=3774283	GT	./.
chr1	3775280	.	A	.	.	LowGQX	END=3775430	GT	./.
chr1	3776969	.	T	.	.	LowGQX	END=3777068	GT	./.
chr1	3782206	.	G	.	.	LowGQX	END=3782566	GT	./.
chr1	3782748	.	C	.	.	LowGQX	END=3782907	GT	./.
chr1	3784528	.	T	.	.	LowGQX	END=3784627	GT	./.
chr1	3786147	.	C	.	.	LowGQX	END=3786341	GT	./.
chr1	3789034	.	A	.	.	LowGQX	END=3789035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3789036	.	G	.	.	LowGQX	.	GT	./.
chr1	3789037	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3789038	.	T	.	.	LowGQX	.	GT	./.
chr1	3789039	.	C	.	.	LowGQX	END=3789071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3789072	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3789073	.	C	.	.	LowGQX	END=3789075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3789076	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3789077	.	C	.	.	LowGQX	END=3789083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	3789084	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	3789085	.	A	.	.	LowGQX	END=3789138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3789543	.	G	.	.	LowGQX	END=3789590	GT	./.
chr1	3789591	.	C	.	.	LowGQX	END=3789642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3800069	.	A	.	.	LowGQX	END=3800307	GT	./.
chr1	3806522	.	C	.	.	LowGQX	END=3806639	GT	./.
chr1	3807131	.	A	.	.	LowGQX	END=3807296	GT	./.
chr1	3807297	.	C	.	.	LowGQX	END=3807457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3807458	.	T	.	.	LowGQX	END=3807578	GT	./.
chr1	3807579	.	T	.	.	LowGQX	END=3807592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3807593	.	G	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	3807594	.	T	.	.	LowGQX	END=3807623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3809445	.	A	.	.	LowGQX	END=3809526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3809527	.	T	.	.	LowGQX	.	GT	./.
chr1	3809528	.	C	.	.	LowGQX	END=3809548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	3809549	.	T	.	.	LowGQX	END=3809562	GT	./.
chr1	3816634	.	A	.	.	LowGQX	END=3816793	GT	./.
chr1	4715394	.	C	.	.	LowGQX	END=4715550	GT	./.
chr1	4771958	.	A	.	.	LowGQX	END=4772239	GT	./.
chr1	4772240	.	C	.	.	LowGQX	END=4772295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	4772296	.	T	.	.	LowGQX	END=4772761	GT	./.
chr1	4829907	.	T	.	.	LowGQX	END=4830006	GT	./.
chr1	4832338	.	A	.	.	LowGQX	END=4832387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832388	.	C	.	.	LowGQX	END=4832438	GT	./.
chr1	4832439	.	G	.	.	LowGQX	END=4832443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832444	.	C	.	.	LowGQX	.	GT	./.
chr1	4832445	.	C	.	.	LowGQX	END=4832447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832448	.	C	.	.	LowGQX	END=4832452	GT	./.
chr1	4832453	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832454	.	G	.	.	LowGQX	END=4832455	GT	./.
chr1	4832456	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832457	.	C	.	.	LowGQX	.	GT	./.
chr1	4832458	.	A	.	.	LowGQX	END=4832463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832464	.	A	.	.	LowGQX	END=4832465	GT	./.
chr1	4832466	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832467	.	G	.	.	LowGQX	.	GT	./.
chr1	4832468	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832469	.	C	.	.	LowGQX	.	GT	./.
chr1	4832470	.	T	.	.	LowGQX	END=4832471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832472	.	T	.	.	LowGQX	.	GT	./.
chr1	4832473	.	A	.	.	LowGQX	END=4832474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832475	.	C	.	.	LowGQX	.	GT	./.
chr1	4832476	.	G	.	.	LowGQX	END=4832477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832478	.	G	.	.	LowGQX	.	GT	./.
chr1	4832479	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832480	.	C	.	.	LowGQX	.	GT	./.
chr1	4832481	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832482	.	C	.	.	LowGQX	.	GT	./.
chr1	4832483	.	T	.	.	LowGQX	END=4832484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832485	.	C	.	.	LowGQX	END=4832486	GT	./.
chr1	4832487	.	G	.	.	LowGQX	END=4832488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832489	.	G	.	.	LowGQX	END=4832493	GT	./.
chr1	4832494	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	4832495	.	A	.	.	LowGQX	END=4832496	GT	./.
chr1	4832497	.	G	.	.	LowGQX	END=4832498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832499	.	G	.	.	LowGQX	.	GT	./.
chr1	4832500	.	T	.	.	LowGQX	END=4832501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832502	.	C	.	.	LowGQX	END=4832503	GT	./.
chr1	4832504	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832505	.	C	.	.	LowGQX	END=4832506	GT	./.
chr1	4832507	.	G	.	.	LowGQX	END=4832509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832510	.	C	.	.	LowGQX	.	GT	./.
chr1	4832511	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832512	.	T	.	.	LowGQX	END=4832513	GT	./.
chr1	4832514	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832515	.	G	.	.	LowGQX	END=4832516	GT	./.
chr1	4832517	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832518	.	C	.	.	LowGQX	.	GT	./.
chr1	4832519	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832520	.	C	.	.	LowGQX	END=4832521	GT	./.
chr1	4832522	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832523	.	G	.	.	LowGQX	.	GT	./.
chr1	4832524	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832525	.	A	.	.	LowGQX	END=4832526	GT	./.
chr1	4832527	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832528	.	C	.	.	LowGQX	END=4832531	GT	./.
chr1	4832532	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832533	.	G	.	.	LowGQX	END=4832534	GT	./.
chr1	4832535	.	G	.	.	LowGQX	END=4832537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832538	.	G	.	.	LowGQX	.	GT	./.
chr1	4832539	.	C	.	.	LowGQX	END=4832540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832541	.	G	.	.	LowGQX	END=4832542	GT	./.
chr1	4832543	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832544	.	C	.	.	LowGQX	.	GT	./.
chr1	4832545	.	T	.	.	LowGQX	END=4832555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832556	.	G	.	.	LowGQX	.	GT	./.
chr1	4832557	.	G	.	.	LowGQX	END=4832562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832563	.	A	.	.	LowGQX	.	GT	./.
chr1	4832564	.	A	.	.	LowGQX	END=4832566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832567	.	C	.	.	LowGQX	.	GT	./.
chr1	4832568	.	C	.	.	LowGQX	END=4832569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832570	.	C	.	.	LowGQX	.	GT	./.
chr1	4832571	.	A	.	.	LowGQX	END=4832577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832578	.	G	.	.	LowGQX	.	GT	./.
chr1	4832579	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4832580	.	A	.	.	LowGQX	END=4832587	GT	./.
chr1	4834474	.	C	.	.	LowGQX	END=4834573	GT	./.
chr1	4847566	.	A	.	.	LowGQX	END=4847590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4847591	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	4847592	.	A	.	.	LowGQX	END=4847741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	4847742	.	C	.	.	LowGQX	END=4847994	GT	./.
chr1	5923314	.	C	.	.	PASS	END=5923419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	5923420	.	T	.	.	PASS	END=5923451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	5923452	.	T	.	.	PASS	END=5923465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	5923929	.	C	.	.	PASS	END=5923948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	5923949	.	C	.	.	PASS	END=5924091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	5924092	.	G	.	.	PASS	END=5924093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	5924397	.	C	.	.	PASS	END=5924460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	5924461	.	A	.	.	PASS	END=5924512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	5924513	.	C	.	.	PASS	END=5924538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	5924539	.	C	.	.	PASS	END=5924572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr1	5924573	.	T	.	.	PASS	END=5924577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	5925151	.	A	.	.	PASS	END=5925245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	5925246	.	C	.	.	PASS	END=5925274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	5925275	.	G	.	.	PASS	END=5925288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	5925289	.	A	.	.	PASS	END=5925297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	5925298	.	T	.	.	PASS	END=5925316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	5925317	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr1	5925318	.	C	.	.	PASS	END=5925333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	5926381	.	C	.	.	PASS	END=5926401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	5926402	.	G	.	.	PASS	END=5926423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:90:60
chr1	5926424	.	T	.	.	PASS	END=5926518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	5927073	.	G	.	.	PASS	END=5927087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	5927088	.	A	.	.	PASS	END=5927120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	5927121	.	T	.	.	PASS	END=5927175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	5927799	.	C	.	.	PASS	END=5927834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	5927835	.	T	.	.	PASS	END=5927936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	5927937	.	C	.	.	PASS	END=5927980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	5927981	.	T	.	.	PASS	END=5927991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	5927992	.	C	.	.	PASS	END=5928010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	5928011	.	C	.	.	PASS	END=5928027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	5928028	.	A	.	.	PASS	END=5928037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	5928038	.	T	.	.	PASS	END=5928042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr1	5928043	.	A	.	.	PASS	END=5928046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	5928047	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:2:60
chr1	5928048	.	T	.	.	PASS	END=5928054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	5928055	.	A	.	.	PASS	END=5928062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	5928063	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	5928064	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	5928065	.	C	.	.	LowGQX	END=5928089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	5928090	.	T	.	.	LowGQX	END=5928096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	5928097	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:60
chr1	5933264	.	A	.	.	PASS	END=5933293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	5933294	.	C	.	.	PASS	END=5933391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	5933392	.	A	.	.	PASS	END=5933420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	5933421	.	G	.	.	PASS	END=5933423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	5934519	.	T	.	.	PASS	END=5934586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	5934587	.	C	.	.	PASS	END=5934652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	5934653	.	C	.	.	PASS	END=5934731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	5934732	.	G	.	.	PASS	END=5934769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	5934933	.	C	.	.	PASS	END=5934988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	5934989	.	T	.	.	PASS	END=5935059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	5935060	.	A	.	.	PASS	END=5935089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	5935090	.	T	.	.	PASS	END=5935125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	5935126	.	T	.	.	PASS	END=5935134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	5935135	.	T	.	.	PASS	END=5935149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	5935150	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:42:60
chr1	5935151	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:15:60
chr1	5935152	.	C	.	.	PASS	END=5935161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	5935162	.	A	T	928.03	PASS	DP=28;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=33.14;SB=-75.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,28:28:75.23:961,75,0:60:75:1.000
chr1	5935163	.	G	.	.	PASS	END=5935179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	5935180	.	G	.	.	PASS	END=5935181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	5935182	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:39:60
chr1	5935183	.	G	.	.	PASS	END=5935186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	5935187	.	A	.	.	PASS	END=5935190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	5935191	.	T	.	.	PASS	END=5935193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	5935194	.	C	.	.	PASS	END=5935200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	5935201	.	A	.	.	PASS	END=5935211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	5937152	.	C	.	.	PASS	END=5937163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	5937164	.	T	.	.	PASS	END=5937167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	5937168	.	G	A	782.64	PASS	BaseQRankSum=0.422;DP=64;Dels=0.00;FS=1.708;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=-0.463;QD=12.23;ReadPosRankSum=-0.076;SB=-60.58	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,28:64:99:813,0,887:60:99:0.444
chr1	5937169	.	C	.	.	PASS	END=5937194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	5937195	.	C	.	.	PASS	END=5937223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	5937224	.	G	.	.	PASS	END=5937343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	5937344	.	G	.	.	PASS	END=5937358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	5939565	.	T	.	.	LowGQX	END=5939692	GT	./.
chr1	5940173	.	C	.	.	PASS	END=5940225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	5940226	.	A	.	.	PASS	END=5940281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	5940282	.	T	.	.	PASS	END=5940299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	5947345	.	C	.	.	PASS	END=5947390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	5947391	.	G	.	.	PASS	END=5947428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	5947429	.	T	.	.	PASS	END=5947491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	5947492	.	G	.	.	PASS	END=5947526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	5948604	.	C	.	.	LowGQX	END=5948703	GT	./.
chr1	5950917	.	A	.	.	PASS	END=5950954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	5950955	.	G	.	.	PASS	END=5951034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	5951035	.	C	.	.	PASS	END=5951059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	5951060	.	C	.	.	PASS	END=5951069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	5951070	.	A	.	.	PASS	END=5951088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	5964676	.	C	.	.	PASS	END=5964681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	5964682	.	T	.	.	PASS	END=5964693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	5964694	.	T	.	.	PASS	END=5964714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	5964715	.	A	.	.	PASS	END=5964768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:82:60
chr1	5964769	.	T	.	.	PASS	END=5964829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:94:60
chr1	5964830	.	T	.	.	PASS	END=5964841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	5964842	.	T	.	.	PASS	END=5964847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	5964848	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:61:60
chr1	5964849	.	G	.	.	PASS	END=5964856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	5964857	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:52:60
chr1	5964858	.	G	.	.	PASS	END=5964861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	5964862	.	A	.	.	PASS	END=5964864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	5965351	.	C	.	.	PASS	END=5965368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	5965369	.	C	.	.	PASS	END=5965475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	5965476	.	C	.	.	PASS	END=5965519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	5965520	.	G	.	.	PASS	END=5965529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	5965530	.	G	.	.	PASS	END=5965543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	5965691	.	C	.	.	PASS	END=5965756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	5965757	.	T	.	.	PASS	END=5965796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:93:60
chr1	5965797	.	A	.	.	PASS	END=5965843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	5967174	.	C	.	.	PASS	END=5967235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	5967236	.	T	.	.	PASS	END=5967298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	5969093	.	C	.	.	PASS	END=5969099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	5969100	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:60
chr1	5969101	.	A	.	.	PASS	END=5969112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	5969113	.	G	.	.	PASS	END=5969131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	5969132	.	G	.	.	PASS	END=5969161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	5969162	.	A	.	.	PASS	END=5969198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	5969199	.	G	.	.	PASS	END=5969295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	5969296	.	A	.	.	PASS	END=5969323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	5969324	.	G	.	.	PASS	END=5969329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	5987708	.	C	.	.	PASS	END=5987801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	5987802	.	C	.	.	PASS	END=5987833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	5987834	.	T	.	.	PASS	END=5987847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	5993206	.	C	.	.	LowGQX	END=5993207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	5993208	.	T	.	.	LowGQX	END=5993216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	5993217	.	C	.	.	LowGQX	END=5993218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	5993219	.	C	.	.	LowGQX	END=5993220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	5993221	.	T	.	.	LowGQX	END=5993223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	5993224	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	5993225	.	G	.	.	LowGQX	END=5993226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	5993227	.	C	.	.	PASS	END=5993234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	5993235	.	A	.	.	PASS	END=5993237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	5993238	.	T	.	.	PASS	END=5993241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	5993242	.	A	.	.	PASS	END=5993244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	5993245	.	C	.	.	PASS	END=5993251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	5993252	.	G	.	.	PASS	END=5993270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	5993271	.	A	.	.	PASS	END=5993289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	5993290	.	G	.	.	PASS	END=5993350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	5993351	.	C	.	.	PASS	END=5993387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	5993388	.	G	.	.	PASS	END=5993389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	6007123	.	T	.	.	PASS	END=6007259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	6007260	.	G	.	.	PASS	END=6007290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	6008129	.	C	.	.	PASS	END=6008214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	6008215	.	C	.	.	PASS	END=6008243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	6008244	.	T	.	.	PASS	END=6008254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	6008255	.	C	.	.	PASS	END=6008258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	6008259	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:67:60
chr1	6008260	.	G	.	.	PASS	END=6008265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	6008266	.	G	.	.	PASS	END=6008277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	6008278	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:48:60
chr1	6008279	.	C	.	.	PASS	END=6008296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	6008297	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:24:60
chr1	6008298	.	A	.	.	PASS	END=6008299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	6008300	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:39:60
chr1	6008301	.	G	.	.	PASS	END=6008303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	6008304	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:29:60
chr1	6008305	.	C	.	.	PASS	END=6008311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	6012729	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:39:60
chr1	6012730	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:93:60
chr1	6012731	.	T	.	.	PASS	END=6012733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	6012734	.	C	.	.	PASS	END=6012739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	6012740	.	T	.	.	PASS	END=6012742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:69:60
chr1	6012743	.	C	.	.	PASS	END=6012751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	6012752	.	C	.	.	PASS	END=6012758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	6012759	.	C	.	.	PASS	END=6012792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	6012793	.	C	.	.	PASS	END=6012896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	6021843	.	G	.	.	PASS	END=6021896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	6021897	.	A	.	.	PASS	END=6021934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	6021935	.	C	.	.	PASS	END=6021953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	6021954	.	T	.	.	PASS	END=6021975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	6021976	.	C	.	.	PASS	END=6021980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	6021981	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:67:60
chr1	6021982	.	T	.	.	PASS	END=6022005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:83:60
chr1	6022006	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:58:60
chr1	6022007	.	T	.	.	PASS	END=6022009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:96:60
chr1	6027358	.	C	.	.	PASS	END=6027460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	6029136	.	A	.	.	PASS	END=6029151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	6029152	.	G	.	.	PASS	END=6029267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	6029268	.	C	.	.	PASS	END=6029291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	6029292	.	G	.	.	PASS	END=6029301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	6029302	.	T	.	.	PASS	END=6029319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	6038329	.	C	.	.	PASS	END=6038342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	6038343	.	A	.	.	PASS	END=6038392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	6038393	.	C	.	.	PASS	END=6038451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	6038452	.	C	.	.	PASS	END=6038473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	6046164	.	C	.	.	PASS	END=6046215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	6046216	.	T	.	.	PASS	END=6046299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	6046300	.	T	.	.	PASS	END=6046342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	6046343	.	C	.	.	PASS	END=6046349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	6100618	.	A	.	.	PASS	END=6100694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	6100695	.	A	.	.	PASS	END=6100706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	6100707	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:66:60
chr1	6100708	.	G	.	.	PASS	END=6100713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	6100714	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:60
chr1	6100715	.	T	.	.	PASS	END=6100717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	6101862	.	T	.	.	PASS	END=6101884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	6101885	.	C	.	.	PASS	END=6101961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	6111596	.	C	.	.	PASS	END=6111611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	6111612	.	T	.	.	PASS	END=6111643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	6111644	.	G	.	.	PASS	END=6111763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:60
chr1	6111764	.	C	.	.	PASS	END=6111792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	6111793	.	A	.	.	PASS	END=6111809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	6111810	.	T	.	.	PASS	END=6111814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	6132787	.	G	.	.	PASS	END=6132865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	6132866	.	T	.	.	PASS	END=6132875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	6132876	.	C	.	.	PASS	END=6132886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	6133762	.	T	.	.	PASS	END=6133840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	6133841	.	G	.	.	PASS	END=6133861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	6142245	.	C	.	.	PASS	END=6142277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	6142278	.	G	.	.	PASS	END=6142344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	6145237	.	A	.	.	PASS	END=6145323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	6145324	.	T	.	.	PASS	END=6145336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:97:60
chr1	6147500	.	A	.	.	PASS	END=6147535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	6147536	.	C	.	.	PASS	END=6147599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	6148980	.	G	.	.	PASS	END=6149040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	6149041	.	A	.	.	PASS	END=6149129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	6149130	.	A	.	.	PASS	END=6149148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	6149149	.	T	.	.	PASS	END=6149168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	6149169	.	C	.	.	PASS	END=6149192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	6149193	.	C	.	.	PASS	END=6149195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	6150443	.	C	.	.	PASS	END=6150472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	6150473	.	T	.	.	PASS	END=6150542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	6151235	.	G	.	.	PASS	END=6151248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:94:60
chr1	6151249	.	C	.	.	PASS	END=6151329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	6151330	.	A	.	.	PASS	END=6151382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	6151383	.	A	.	.	PASS	END=6151394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	6154453	.	A	.	.	PASS	END=6154486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:90:60
chr1	6154487	.	T	.	.	PASS	END=6154552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	6155381	.	A	.	.	PASS	END=6155410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	6155411	.	A	.	.	PASS	END=6155505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	6155588	.	A	.	.	PASS	END=6155685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	6155686	.	T	.	.	PASS	END=6155687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	6156134	.	A	.	.	LowGQX	.	GT	./.
chr1	6156135	.	C	.	.	LowGQX	END=6156138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156139	.	A	.	.	LowGQX	.	GT	./.
chr1	6156140	.	G	.	.	LowGQX	END=6156149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156150	.	A	.	.	LowGQX	.	GT	./.
chr1	6156151	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156152	.	C	.	.	LowGQX	.	GT	./.
chr1	6156153	.	A	.	.	LowGQX	END=6156160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156161	.	G	.	.	LowGQX	.	GT	./.
chr1	6156162	.	G	.	.	LowGQX	END=6156163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156164	.	C	.	.	LowGQX	END=6156165	GT	./.
chr1	6156166	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156167	.	G	.	.	LowGQX	END=6156168	GT	./.
chr1	6156169	.	A	.	.	LowGQX	END=6156178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156179	.	A	.	.	LowGQX	.	GT	./.
chr1	6156180	.	G	.	.	LowGQX	END=6156183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156184	.	G	.	.	LowGQX	.	GT	./.
chr1	6156185	.	C	.	.	LowGQX	END=6156186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156187	.	G	.	.	LowGQX	.	GT	./.
chr1	6156188	.	T	.	.	LowGQX	END=6156189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156190	.	T	.	.	LowGQX	.	GT	./.
chr1	6156191	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156192	.	A	.	.	LowGQX	.	GT	./.
chr1	6156193	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156194	.	C	.	.	LowGQX	END=6156196	GT	./.
chr1	6156197	.	T	.	.	LowGQX	END=6156198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156199	.	G	.	.	LowGQX	.	GT	./.
chr1	6156200	.	G	.	.	LowGQX	END=6156202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156203	.	C	.	.	LowGQX	.	GT	./.
chr1	6156204	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156205	.	A	.	.	LowGQX	.	GT	./.
chr1	6156206	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156207	.	A	.	.	LowGQX	.	GT	./.
chr1	6156208	.	G	.	.	LowGQX	END=6156210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156211	.	C	.	.	LowGQX	.	GT	./.
chr1	6156212	.	T	.	.	LowGQX	END=6156217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156218	.	C	.	.	LowGQX	.	GT	./.
chr1	6156219	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156220	.	A	.	.	LowGQX	.	GT	./.
chr1	6156221	.	G	.	.	LowGQX	END=6156222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156223	.	G	.	.	LowGQX	.	GT	./.
chr1	6156224	.	C	.	.	LowGQX	END=6156225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156226	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	6156227	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156228	.	G	.	.	LowGQX	.	GT	./.
chr1	6156229	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156230	.	G	.	.	LowGQX	.	GT	./.
chr1	6156231	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156232	.	C	.	.	LowGQX	.	GT	./.
chr1	6156233	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6156694	.	A	.	.	PASS	END=6156796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	6156797	.	C	.	.	PASS	END=6156807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	6156808	.	T	.	.	PASS	END=6156818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	6157327	.	A	.	.	PASS	END=6157410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:261:99:60
chr1	6157411	.	A	.	.	PASS	END=6157423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	6157424	.	G	.	.	PASS	END=6157433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	6157434	.	C	T	4928.70	PASS	BaseQRankSum=-0.635;DP=161;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=13.4048;MQ=60;MQ0=0;MQRankSum=0.290;QD=30.61;ReadPosRankSum=0.204;SB=-1086.78	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,160:161:99:4929,352,0:60:99:0.994
chr1	6157435	.	T	.	.	PASS	END=6157460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	6157461	.	C	.	.	PASS	END=6157489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	6157490	.	T	.	.	PASS	END=6157514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	6157515	.	T	.	.	PASS	END=6157521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	6157522	.	T	.	.	PASS	END=6157540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	6157541	.	C	.	.	PASS	END=6157554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	6157555	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:72:60
chr1	6157556	.	C	.	.	PASS	END=6157564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	6157565	.	C	.	.	PASS	END=6157588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	6157589	.	T	.	.	PASS	END=6157591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	6158540	.	C	.	.	PASS	END=6158561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	6158562	.	A	G	2509.05	PASS	BaseQRankSum=1.071;DP=100;Dels=0.00;FS=2.155;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=-0.546;QD=25.09;ReadPosRankSum=0.808;SB=-1536.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:3,97:100:99:2542,121,0:60:99:0.970
chr1	6158563	.	T	.	.	PASS	END=6158637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	6158638	.	G	.	.	PASS	END=6158639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	6159882	.	G	.	.	LowGQX	END=6159886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6159887	.	A	.	.	LowGQX	.	GT	./.
chr1	6159888	.	G	.	.	LowGQX	END=6159891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6159892	.	A	.	.	LowGQX	.	GT	./.
chr1	6159893	.	G	.	.	LowGQX	END=6159895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6159896	.	A	.	.	LowGQX	.	GT	./.
chr1	6159897	.	G	.	.	LowGQX	END=6159903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6159904	.	A	.	.	LowGQX	.	GT	./.
chr1	6159905	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6159906	.	A	.	.	LowGQX	.	GT	./.
chr1	6159907	.	G	.	.	LowGQX	END=6159910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6159911	.	A	.	.	LowGQX	.	GT	./.
chr1	6159912	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6159913	.	A	.	.	LowGQX	.	GT	./.
chr1	6159914	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6159915	.	T	.	.	LowGQX	.	GT	./.
chr1	6159916	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6159917	.	A	.	.	LowGQX	.	GT	./.
chr1	6159918	.	C	.	.	LowGQX	END=6159920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6159921	.	C	.	.	LowGQX	END=6159981	GT	./.
chr1	6159982	.	C	.	.	LowGQX	END=6159997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6159998	.	T	.	.	LowGQX	.	GT	./.
chr1	6159999	.	G	.	.	LowGQX	END=6160006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6160007	.	A	.	.	LowGQX	.	GT	./.
chr1	6160008	.	G	.	.	LowGQX	END=6160010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6160011	.	G	.	.	LowGQX	END=6160012	GT	./.
chr1	6160013	.	A	.	.	LowGQX	END=6160016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6160017	.	A	.	.	LowGQX	.	GT	./.
chr1	6160018	.	G	.	.	LowGQX	END=6160041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6160042	.	G	.	.	LowGQX	.	GT	./.
chr1	6160043	.	G	.	.	LowGQX	END=6160078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6161968	.	A	.	.	LowGQX	END=6162178	GT	./.
chr1	6165408	.	T	.	.	LowGQX	END=6165410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	6165411	.	C	.	.	LowGQX	.	GT	./.
chr1	6165412	.	A	.	.	LowGQX	END=6165415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	6165416	.	T	.	.	LowGQX	.	GT	./.
chr1	6165417	.	G	.	.	LowGQX	END=6165470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	6165471	.	T	.	.	LowGQX	.	GT	./.
chr1	6165472	.	G	.	.	LowGQX	END=6165507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	6166272	.	C	.	.	LowGQX	END=6166321	GT	./.
chr1	6166322	.	G	.	.	LowGQX	END=6166357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6166358	.	A	.	.	LowGQX	.	GT	./.
chr1	6166359	.	A	.	.	LowGQX	END=6166368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6166369	.	C	.	.	LowGQX	END=6166370	GT	./.
chr1	6166371	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6166453	.	A	.	.	LowGQX	END=6166455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6166456	.	G	.	.	LowGQX	.	GT	./.
chr1	6166457	.	G	.	.	LowGQX	END=6166464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6166465	.	G	.	.	LowGQX	.	GT	./.
chr1	6166466	.	G	.	.	LowGQX	END=6166468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6166469	.	C	.	.	LowGQX	END=6166470	GT	./.
chr1	6166471	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6166472	.	A	.	.	LowGQX	END=6166500	GT	./.
chr1	6166501	.	T	.	.	LowGQX	END=6166554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6166555	.	G	T	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	6166556	.	G	.	.	LowGQX	END=6166571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	6166674	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:60
chr1	6166675	.	C	.	.	PASS	END=6166681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	6166682	.	G	.	.	PASS	END=6166692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	6166693	.	C	.	.	PASS	END=6166700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	6166701	.	C	.	.	PASS	END=6166703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	6166704	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:66:60
chr1	6166705	.	T	.	.	PASS	END=6166719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr1	6166720	.	G	.	.	PASS	END=6166773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	6166774	.	G	.	.	PASS	END=6166840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	6166841	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:99:60
chr1	6169852	.	C	.	.	PASS	END=6169853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:54:60
chr1	6169854	.	C	.	.	PASS	END=6169858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	6169859	.	G	.	.	PASS	END=6169948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	6169949	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:45:60
chr1	6169950	.	C	.	.	PASS	END=6169964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	6169965	.	A	.	.	PASS	END=6169969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	6169970	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:30:60
chr1	6169971	.	G	.	.	PASS	END=6169982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	6169983	.	T	.	.	PASS	END=6170004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	6170005	.	C	.	.	PASS	END=6170014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	6170015	.	G	.	.	PASS	END=6170018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	6170019	.	T	.	.	LowGQX	END=6170020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	6170021	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	6170022	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	6170023	.	C	.	.	PASS	END=6170034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	6170035	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	6170036	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	6170037	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	6170038	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	6170039	.	C	.	.	LowGQX	END=6170041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	6170042	.	C	.	.	PASS	END=6170046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	6170047	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	6170048	.	C	.	.	PASS	END=6170050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	6170051	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	6170052	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	6170452	.	A	.	.	LowGQX	END=6170588	GT	./.
chr1	6171833	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6171834	.	C	.	.	LowGQX	.	GT	./.
chr1	6171835	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6171836	.	T	.	.	LowGQX	.	GT	./.
chr1	6171837	.	C	.	.	LowGQX	END=6171841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6171842	.	T	.	.	LowGQX	.	GT	./.
chr1	6171843	.	G	.	.	LowGQX	END=6171866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6171867	.	G	.	.	LowGQX	.	GT	./.
chr1	6171868	.	C	.	.	LowGQX	END=6171896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6171897	.	A	.	.	LowGQX	END=6171945	GT	./.
chr1	6172198	.	A	.	.	LowGQX	END=6172339	GT	./.
chr1	6172964	.	C	.	.	LowGQX	END=6173116	GT	./.
chr1	6173370	.	C	.	.	LowGQX	END=6173476	GT	./.
chr1	6181163	.	A	.	.	LowGQX	.	GT	./.
chr1	6181164	.	C	.	.	LowGQX	END=6181185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6181186	.	A	.	.	LowGQX	.	GT	./.
chr1	6181187	.	G	.	.	LowGQX	END=6181195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6181196	.	C	.	.	LowGQX	END=6181197	GT	./.
chr1	6181198	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6181199	.	C	.	.	LowGQX	.	GT	./.
chr1	6181200	.	T	.	.	LowGQX	END=6181203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6181204	.	T	.	.	LowGQX	.	GT	./.
chr1	6181205	.	C	.	.	LowGQX	END=6181207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6181208	.	C	.	.	LowGQX	.	GT	./.
chr1	6181209	.	T	.	.	LowGQX	END=6181220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6181221	.	T	.	.	LowGQX	.	GT	./.
chr1	6181222	.	C	.	.	LowGQX	END=6181227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6181228	.	C	.	.	LowGQX	END=6181299	GT	./.
chr1	6181484	.	C	.	.	LowGQX	END=6181485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6181486	.	G	.	.	LowGQX	.	GT	./.
chr1	6181487	.	A	.	.	LowGQX	END=6181511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6181512	.	C	.	.	LowGQX	.	GT	./.
chr1	6181513	.	C	.	.	LowGQX	END=6181519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6181520	.	A	.	.	LowGQX	END=6181643	GT	./.
chr1	6184006	.	A	.	.	LowGQX	END=6184019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6184020	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6184021	.	C	.	.	LowGQX	END=6184026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6184027	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	6184028	.	G	.	.	LowGQX	END=6184195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6184535	.	G	.	.	LowGQX	END=6184652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6184653	.	T	.	.	LowGQX	.	GT	./.
chr1	6184654	.	C	.	.	LowGQX	END=6184660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6184661	.	G	.	.	LowGQX	END=6184723	GT	./.
chr1	6185158	.	A	.	.	LowGQX	END=6185295	GT	./.
chr1	6185579	.	C	.	.	LowGQX	END=6185678	GT	./.
chr1	6185823	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6185824	.	A	.	.	LowGQX	END=6185825	GT	./.
chr1	6185826	.	T	.	.	LowGQX	END=6185827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6185828	.	T	.	.	LowGQX	END=6185829	GT	./.
chr1	6185830	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6185831	.	C	.	.	LowGQX	END=6185832	GT	./.
chr1	6185833	.	T	.	.	LowGQX	END=6185838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6185839	.	C	.	.	LowGQX	END=6185840	GT	./.
chr1	6185841	.	T	.	.	LowGQX	END=6185844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6185845	.	T	.	.	LowGQX	.	GT	./.
chr1	6185846	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6185847	.	C	.	.	LowGQX	.	GT	./.
chr1	6185848	.	A	.	.	LowGQX	END=6185850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6185851	.	G	.	.	LowGQX	.	GT	./.
chr1	6185852	.	T	.	.	LowGQX	END=6185854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6185855	.	T	.	.	LowGQX	.	GT	./.
chr1	6185856	.	C	.	.	LowGQX	END=6185861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6185862	.	C	.	.	LowGQX	END=6185863	GT	./.
chr1	6185864	.	T	.	.	LowGQX	END=6185866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6185867	.	T	.	.	LowGQX	.	GT	./.
chr1	6185868	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6185869	.	A	.	.	LowGQX	END=6185871	GT	./.
chr1	6185872	.	G	.	.	LowGQX	END=6185873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6185874	.	C	.	.	LowGQX	END=6185875	GT	./.
chr1	6185876	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6185877	.	T	.	.	LowGQX	.	GT	./.
chr1	6185878	.	G	.	.	LowGQX	END=6185885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6185886	.	C	.	.	LowGQX	END=6185906	GT	./.
chr1	6185907	.	C	.	.	LowGQX	END=6185922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6186609	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:47:60
chr1	6186610	.	G	.	.	PASS	END=6186621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	6186622	.	C	.	.	PASS	END=6186623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	6186624	.	G	.	.	PASS	END=6186625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:84:60
chr1	6186626	.	A	.	.	PASS	END=6186628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	6186629	.	C	.	.	PASS	END=6186630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	6186631	.	C	.	.	PASS	END=6186642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	6186643	.	T	.	.	PASS	END=6186650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	6186651	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:44:60
chr1	6186652	.	T	.	.	PASS	END=6186665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	6186666	.	C	.	.	PASS	END=6186721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	6186722	.	G	.	.	PASS	END=6186808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	6188104	.	A	.	.	LowGQX	END=6188280	GT	./.
chr1	6188557	.	A	.	.	LowGQX	END=6188566	GT	./.
chr1	6188567	.	G	.	.	LowGQX	END=6188568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6188569	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	6188570	.	C	.	.	LowGQX	END=6188654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6188655	.	C	.	.	LowGQX	END=6188671	GT	./.
chr1	6188896	.	A	.	.	LowGQX	END=6188994	GT	./.
chr1	6188995	.	C	.	.	LowGQX	END=6189004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6189005	.	A	.	.	LowGQX	.	GT	./.
chr1	6189006	.	G	.	.	LowGQX	END=6189011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6189012	.	T	.	.	LowGQX	.	GT	./.
chr1	6189013	.	G	.	.	LowGQX	END=6189020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6189021	.	T	.	.	LowGQX	.	GT	./.
chr1	6189022	.	C	.	.	LowGQX	END=6189029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6189030	.	T	.	.	LowGQX	.	GT	./.
chr1	6189031	.	G	.	.	LowGQX	END=6189131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6190262	.	A	.	.	LowGQX	END=6190390	GT	./.
chr1	6191689	.	A	.	.	LowGQX	END=6191721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6191722	.	G	.	5.79	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.01:60:0
chr1	6191723	.	C	.	.	LowGQX	END=6191769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6191770	.	C	.	.	LowGQX	END=6191776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	6191777	.	A	.	.	LowGQX	END=6191810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6194186	.	A	.	.	LowGQX	END=6194232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6194233	.	C	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	6194234	.	A	.	.	LowGQX	END=6194247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6194248	.	C	.	.	LowGQX	END=6194321	GT	./.
chr1	6194776	.	A	.	.	LowGQX	END=6194921	GT	./.
chr1	6195268	.	C	.	.	PASS	END=6195275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	6195276	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	6195277	.	G	.	.	PASS	END=6195280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	6195281	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	6195282	.	T	.	.	PASS	END=6195286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	6195287	.	C	.	.	PASS	END=6195294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	6195295	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	6195296	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	6195297	.	T	.	.	PASS	END=6195299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	6195300	.	G	.	.	PASS	END=6195301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	6195302	.	C	.	.	PASS	END=6195310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	6195311	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr1	6195312	.	C	.	.	PASS	END=6195321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	6195322	.	G	.	.	PASS	END=6195345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	6195346	.	C	.	.	PASS	END=6195353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	6195354	.	C	.	.	PASS	END=6195364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	6195365	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:45:60
chr1	6195366	.	G	.	.	PASS	END=6195375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	6195376	.	C	.	.	PASS	END=6195383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	6195384	.	G	.	.	PASS	END=6195465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	6196575	.	A	.	.	LowGQX	END=6196585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6196586	.	T	.	.	LowGQX	.	GT	./.
chr1	6196587	.	C	.	.	LowGQX	END=6196590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6196591	.	A	.	.	LowGQX	.	GT	./.
chr1	6196592	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6196593	.	T	.	.	LowGQX	.	GT	./.
chr1	6196594	.	C	.	.	LowGQX	END=6196595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6196596	.	G	.	.	LowGQX	.	GT	./.
chr1	6196597	.	G	.	.	LowGQX	END=6196611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6196612	.	G	T	4.97	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.49;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:25.53:33,0,26:60:5:0.500
chr1	6196613	.	A	.	.	LowGQX	END=6196640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6196641	.	G	.	.	LowGQX	.	GT	./.
chr1	6196642	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	6196643	.	G	.	.	LowGQX	.	GT	./.
chr1	6196644	.	T	.	.	LowGQX	END=6196645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6196646	.	C	.	.	LowGQX	.	GT	./.
chr1	6196647	.	C	.	.	LowGQX	END=6196654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6196655	.	A	.	.	LowGQX	END=6196656	GT	./.
chr1	6196657	.	C	.	.	LowGQX	END=6196659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6196660	.	C	.	.	LowGQX	.	GT	./.
chr1	6196661	.	T	.	.	LowGQX	END=6196690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6196691	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	6196692	.	T	.	.	LowGQX	END=6196700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6196786	.	A	.	.	LowGQX	END=6196787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	6196788	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	6196789	.	T	.	.	LowGQX	END=6196793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	6196794	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	6196795	.	T	.	.	LowGQX	END=6196800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	6196801	.	T	.	.	LowGQX	END=6196802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	6196803	.	C	.	.	LowGQX	END=6196805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	6196806	.	G	.	.	LowGQX	END=6196807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	6196808	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	6196809	.	G	.	.	LowGQX	END=6196811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	6196812	.	G	.	.	LowGQX	END=6196829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	6196830	.	C	.	.	LowGQX	END=6196832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	6196833	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	6196834	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	6196835	.	A	.	.	LowGQX	END=6196846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	6196847	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	6196848	.	G	.	.	LowGQX	END=6196858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	6196859	.	T	.	.	LowGQX	END=6196862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	6196863	.	C	.	.	LowGQX	END=6196874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	6196875	.	G	.	.	LowGQX	END=6196927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6202186	.	A	.	.	LowGQX	END=6202187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6202188	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6202189	.	T	.	.	LowGQX	END=6202190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6202191	.	C	.	.	LowGQX	.	GT	./.
chr1	6202192	.	A	.	.	LowGQX	END=6202200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6202201	.	A	.	.	LowGQX	.	GT	./.
chr1	6202202	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6202203	.	C	.	.	LowGQX	.	GT	./.
chr1	6202204	.	T	.	.	LowGQX	END=6202212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202213	.	C	.	.	LowGQX	.	GT	./.
chr1	6202214	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202215	.	C	.	.	LowGQX	END=6202218	GT	./.
chr1	6202219	.	A	.	.	LowGQX	END=6202221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202222	.	G	.	.	LowGQX	.	GT	./.
chr1	6202223	.	C	.	.	LowGQX	END=6202224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202225	.	T	.	.	LowGQX	END=6202226	GT	./.
chr1	6202227	.	G	.	.	LowGQX	END=6202234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202235	.	A	.	.	LowGQX	.	GT	./.
chr1	6202236	.	G	.	.	LowGQX	END=6202241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202242	.	C	.	.	LowGQX	.	GT	./.
chr1	6202243	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202244	.	C	.	.	LowGQX	.	GT	./.
chr1	6202245	.	G	.	.	LowGQX	END=6202246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202247	.	T	.	.	LowGQX	.	GT	./.
chr1	6202248	.	C	.	.	LowGQX	END=6202249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202250	.	C	.	.	LowGQX	.	GT	./.
chr1	6202251	.	C	.	.	LowGQX	END=6202252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202253	.	G	.	.	LowGQX	END=6202255	GT	./.
chr1	6202256	.	T	.	.	LowGQX	END=6202258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202259	.	C	.	.	LowGQX	.	GT	./.
chr1	6202260	.	C	.	.	LowGQX	END=6202263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202264	.	C	.	.	LowGQX	.	GT	./.
chr1	6202265	.	G	.	.	LowGQX	END=6202278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202279	.	C	.	.	LowGQX	.	GT	./.
chr1	6202280	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202281	.	C	.	.	LowGQX	.	GT	./.
chr1	6202282	.	G	.	.	LowGQX	END=6202285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202286	.	A	.	.	LowGQX	.	GT	./.
chr1	6202287	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202288	.	G	.	.	LowGQX	END=6202289	GT	./.
chr1	6202290	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202291	.	A	.	.	LowGQX	END=6202332	GT	./.
chr1	6202333	.	C	.	.	LowGQX	END=6202390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202472	.	A	.	.	LowGQX	END=6202474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	6202475	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	6202476	.	C	.	.	LowGQX	END=6202477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	6202478	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	6202479	.	T	.	.	LowGQX	END=6202490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	6202491	.	A	.	.	LowGQX	END=6202501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	6202502	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:3.01:60:3
chr1	6202503	.	T	.	.	LowGQX	END=6202506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	6202507	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	6202508	.	T	.	.	LowGQX	END=6202510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	6202511	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	6202512	.	C	.	.	LowGQX	END=6202524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	6202525	.	A	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr1	6202526	.	C	.	.	LowGQX	END=6202615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202616	.	C	.	.	LowGQX	.	GT	./.
chr1	6202617	.	C	.	.	LowGQX	END=6202620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202621	.	T	.	.	LowGQX	.	GT	./.
chr1	6202622	.	G	.	.	LowGQX	END=6202625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6202626	.	A	.	.	LowGQX	END=6202667	GT	./.
chr1	6203881	.	A	.	.	LowGQX	END=6203993	GT	./.
chr1	6204082	.	A	.	.	LowGQX	END=6204217	GT	./.
chr1	6206270	.	A	.	.	LowGQX	END=6206302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206303	.	A	.	.	LowGQX	END=6206316	GT	./.
chr1	6206317	.	C	.	.	LowGQX	END=6206357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206358	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	6206359	.	T	.	.	LowGQX	END=6206473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206474	.	A	.	.	LowGQX	END=6206485	GT	./.
chr1	6206652	.	T	.	.	LowGQX	END=6206709	GT	./.
chr1	6206710	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206711	.	T	.	.	LowGQX	.	GT	./.
chr1	6206712	.	C	.	.	LowGQX	END=6206718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206719	.	A	.	.	LowGQX	.	GT	./.
chr1	6206720	.	C	.	.	LowGQX	END=6206723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206724	.	C	.	.	LowGQX	.	GT	./.
chr1	6206725	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206726	.	T	.	.	LowGQX	END=6206727	GT	./.
chr1	6206728	.	T	.	.	LowGQX	END=6206738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206739	.	C	.	.	LowGQX	.	GT	./.
chr1	6206740	.	C	.	.	LowGQX	END=6206743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206744	.	G	.	.	LowGQX	.	GT	./.
chr1	6206745	.	A	.	.	LowGQX	END=6206748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206749	.	A	.	.	LowGQX	.	GT	./.
chr1	6206750	.	T	.	.	LowGQX	END=6206759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206760	.	A	.	.	LowGQX	END=6206761	GT	./.
chr1	6206762	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206763	.	G	.	.	LowGQX	.	GT	./.
chr1	6206764	.	C	.	.	LowGQX	END=6206769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206770	.	C	.	.	LowGQX	.	GT	./.
chr1	6206771	.	C	.	.	LowGQX	END=6206793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206794	.	A	.	.	LowGQX	.	GT	./.
chr1	6206795	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206796	.	G	.	.	LowGQX	.	GT	./.
chr1	6206797	.	G	.	.	LowGQX	END=6206803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206804	.	T	.	.	LowGQX	END=6206805	GT	./.
chr1	6206806	.	C	.	.	LowGQX	END=6206812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206813	.	T	.	.	LowGQX	.	GT	./.
chr1	6206814	.	T	.	.	LowGQX	END=6206816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206817	.	G	.	.	LowGQX	.	GT	./.
chr1	6206818	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206819	.	G	.	.	LowGQX	.	GT	./.
chr1	6206820	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206821	.	A	.	.	LowGQX	.	GT	./.
chr1	6206822	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206823	.	G	.	.	LowGQX	.	GT	./.
chr1	6206824	.	G	.	.	LowGQX	END=6206834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206835	.	C	.	.	LowGQX	.	GT	./.
chr1	6206836	.	C	.	.	LowGQX	END=6206837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206838	.	C	.	.	LowGQX	.	GT	./.
chr1	6206839	.	G	.	.	LowGQX	END=6206841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6206842	.	A	.	.	LowGQX	.	GT	./.
chr1	6206843	.	G	.	.	LowGQX	END=6206844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6206845	.	C	.	.	LowGQX	.	GT	./.
chr1	6206846	.	C	.	.	LowGQX	END=6206851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6206852	.	A	.	.	LowGQX	.	GT	./.
chr1	6206853	.	G	.	.	LowGQX	END=6206859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6206860	.	C	.	.	LowGQX	.	GT	./.
chr1	6206861	.	A	.	.	LowGQX	END=6206863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206864	.	A	.	.	LowGQX	END=6206865	GT	./.
chr1	6206866	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206867	.	G	.	.	LowGQX	.	GT	./.
chr1	6206868	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206869	.	G	.	.	LowGQX	.	GT	./.
chr1	6206870	.	G	.	.	LowGQX	END=6206871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206872	.	A	.	.	LowGQX	.	GT	./.
chr1	6206873	.	G	.	.	LowGQX	END=6206874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206875	.	G	.	.	LowGQX	.	GT	./.
chr1	6206876	.	G	.	.	LowGQX	END=6206877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206878	.	C	.	.	LowGQX	END=6206879	GT	./.
chr1	6206880	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206881	.	C	.	.	LowGQX	END=6206883	GT	./.
chr1	6206884	.	C	.	.	LowGQX	END=6206890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206891	.	C	.	.	LowGQX	END=6206893	GT	./.
chr1	6206894	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206895	.	G	.	.	LowGQX	END=6206897	GT	./.
chr1	6206898	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206899	.	A	.	.	LowGQX	END=6206900	GT	./.
chr1	6206901	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206902	.	C	.	.	LowGQX	END=6206903	GT	./.
chr1	6206904	.	G	.	.	LowGQX	END=6206911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206912	.	T	.	.	LowGQX	END=6206913	GT	./.
chr1	6206914	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206915	.	C	.	.	LowGQX	.	GT	./.
chr1	6206916	.	C	.	.	LowGQX	END=6206921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206922	.	G	.	.	LowGQX	END=6206923	GT	./.
chr1	6206924	.	G	.	.	LowGQX	END=6206925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206926	.	G	.	.	LowGQX	.	GT	./.
chr1	6206927	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206928	.	G	.	.	LowGQX	.	GT	./.
chr1	6206929	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206930	.	C	.	.	LowGQX	.	GT	./.
chr1	6206931	.	A	.	.	LowGQX	END=6206935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206936	.	G	.	.	LowGQX	.	GT	./.
chr1	6206937	.	G	.	.	LowGQX	END=6206942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206943	.	G	.	.	LowGQX	END=6206944	GT	./.
chr1	6206945	.	A	.	.	LowGQX	END=6206948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206949	.	T	.	.	LowGQX	.	GT	./.
chr1	6206950	.	C	.	.	LowGQX	END=6206952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206953	.	C	.	.	LowGQX	END=6206954	GT	./.
chr1	6206955	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206956	.	G	.	.	LowGQX	.	GT	./.
chr1	6206957	.	G	.	.	LowGQX	END=6206959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206960	.	G	.	.	LowGQX	.	GT	./.
chr1	6206961	.	G	.	.	LowGQX	END=6206963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206964	.	T	.	.	LowGQX	.	GT	./.
chr1	6206965	.	C	.	.	LowGQX	END=6206967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206968	.	C	.	.	LowGQX	.	GT	./.
chr1	6206969	.	T	.	.	LowGQX	END=6206971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206972	.	A	.	.	LowGQX	END=6206973	GT	./.
chr1	6206974	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206975	.	G	.	.	LowGQX	.	GT	./.
chr1	6206976	.	C	.	.	LowGQX	END=6206982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206983	.	C	.	.	LowGQX	.	GT	./.
chr1	6206984	.	T	.	.	LowGQX	END=6206988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6206989	.	C	.	.	LowGQX	END=6206990	GT	./.
chr1	6206991	.	C	.	.	LowGQX	END=6207001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6208882	.	G	.	.	LowGQX	END=6208999	GT	./.
chr1	6209000	.	C	.	.	LowGQX	END=6209137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6209304	.	A	.	.	LowGQX	END=6209315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6209316	.	C	.	.	LowGQX	END=6209474	GT	./.
chr1	6211090	.	A	.	.	LowGQX	END=6211215	GT	./.
chr1	6211216	.	C	.	.	LowGQX	END=6211217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6212470	.	A	.	.	LowGQX	END=6212515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6212516	.	A	.	.	LowGQX	.	GT	./.
chr1	6212517	.	C	.	.	LowGQX	END=6212520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6212521	.	A	.	.	LowGQX	.	GT	./.
chr1	6212522	.	G	.	.	LowGQX	END=6212598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6214718	.	A	.	.	LowGQX	END=6214960	GT	./.
chr1	6215657	.	A	.	.	LowGQX	END=6215779	GT	./.
chr1	6219394	.	A	.	.	LowGQX	END=6219577	GT	./.
chr1	6228208	.	A	.	.	LowGQX	END=6228237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6228238	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6228239	.	T	.	.	LowGQX	END=6228240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6228241	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6228242	.	T	.	.	LowGQX	END=6228260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6228261	.	T	.	.	LowGQX	.	GT	./.
chr1	6228262	.	T	.	.	LowGQX	END=6228276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6228277	.	A	.	.	LowGQX	.	GT	./.
chr1	6228278	.	G	.	.	LowGQX	END=6228337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6228338	.	C	.	.	LowGQX	END=6228339	GT	./.
chr1	6239935	.	T	.	.	LowGQX	END=6240094	GT	./.
chr1	6246730	.	A	.	.	LowGQX	END=6246929	GT	./.
chr1	6252988	.	A	.	.	LowGQX	END=6253052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6253053	.	A	.	.	LowGQX	.	GT	./.
chr1	6253054	.	C	.	.	LowGQX	END=6253059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	6253060	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	6253061	.	A	.	.	LowGQX	END=6253116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6257710	.	A	.	.	LowGQX	END=6257818	GT	./.
chr1	6259578	.	C	.	.	LowGQX	END=6259677	GT	./.
chr1	6266584	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6266585	.	T	.	.	LowGQX	.	GT	./.
chr1	6266586	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6266587	.	T	.	.	LowGQX	.	GT	./.
chr1	6266588	.	C	.	.	LowGQX	END=6266620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6266621	.	T	.	.	LowGQX	.	GT	./.
chr1	6266622	.	G	.	.	LowGQX	END=6266641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6266642	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6266643	.	T	.	.	LowGQX	.	GT	./.
chr1	6266644	.	G	.	.	LowGQX	END=6266652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6266653	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6266654	.	T	.	.	LowGQX	END=6266680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6266681	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6266682	.	C	.	.	LowGQX	.	GT	./.
chr1	6266683	.	G	.	.	LowGQX	END=6266689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6266690	.	A	.	.	LowGQX	.	GT	./.
chr1	6266691	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6266692	.	G	.	.	LowGQX	END=6266693	GT	./.
chr1	6266694	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6266695	.	C	.	.	LowGQX	.	GT	./.
chr1	6266696	.	G	.	.	LowGQX	END=6266699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6266700	.	G	.	.	LowGQX	.	GT	./.
chr1	6266701	.	T	.	.	LowGQX	END=6266705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6266706	.	T	.	.	LowGQX	.	GT	./.
chr1	6266707	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6266708	.	T	.	.	LowGQX	.	GT	./.
chr1	6266709	.	G	.	.	LowGQX	END=6266710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6266711	.	A	.	.	LowGQX	.	GT	./.
chr1	6266712	.	C	.	.	LowGQX	END=6266714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6266715	.	T	.	.	LowGQX	.	GT	./.
chr1	6266716	.	T	.	.	LowGQX	END=6266717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6266718	.	C	.	.	LowGQX	.	GT	./.
chr1	6266719	.	C	.	.	LowGQX	END=6266720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6266721	.	C	.	.	LowGQX	.	GT	./.
chr1	6266722	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6266723	.	A	.	.	LowGQX	.	GT	./.
chr1	6266724	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6266725	.	T	.	.	LowGQX	.	GT	./.
chr1	6266726	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6266727	.	C	.	.	LowGQX	.	GT	./.
chr1	6266728	.	T	.	.	LowGQX	END=6266733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6266734	.	G	.	.	LowGQX	.	GT	./.
chr1	6266735	.	G	.	.	LowGQX	END=6266736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6266737	.	T	.	.	LowGQX	.	GT	./.
chr1	6266738	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6266739	.	C	.	.	LowGQX	END=6266788	GT	./.
chr1	6267437	.	A	.	.	LowGQX	END=6267876	GT	./.
chr1	6267877	.	T	.	.	LowGQX	END=6267982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6268908	.	T	.	.	LowGQX	END=6268979	GT	./.
chr1	6268980	.	C	.	.	LowGQX	END=6269001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6269002	.	A	.	.	LowGQX	.	GT	./.
chr1	6269003	.	C	.	.	LowGQX	END=6269010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6269011	.	A	.	.	LowGQX	.	GT	./.
chr1	6269012	.	C	.	.	LowGQX	END=6269020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6269021	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	6269022	.	A	.	.	LowGQX	END=6269034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6269035	.	A	.	.	LowGQX	.	GT	./.
chr1	6269036	.	C	.	.	LowGQX	END=6269037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6269038	.	A	.	.	LowGQX	.	GT	./.
chr1	6269039	.	C	.	.	LowGQX	END=6269060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6269061	.	A	.	.	LowGQX	.	GT	./.
chr1	6269062	.	G	.	.	LowGQX	END=6269084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6269085	.	A	.	.	LowGQX	.	GT	./.
chr1	6269086	.	G	.	.	LowGQX	END=6269113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6269114	.	T	.	.	LowGQX	.	GT	./.
chr1	6269115	.	G	.	.	LowGQX	END=6269118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6269166	.	C	.	.	LowGQX	END=6269265	GT	./.
chr1	6269321	.	T	.	.	LowGQX	END=6269601	GT	./.
chr1	6269902	.	T	.	.	LowGQX	END=6270057	GT	./.
chr1	6270270	.	C	.	.	LowGQX	END=6270369	GT	./.
chr1	6270415	.	C	.	.	LowGQX	END=6270514	GT	./.
chr1	6270915	.	T	.	.	LowGQX	END=6271014	GT	./.
chr1	6271079	.	A	.	.	LowGQX	END=6271175	GT	./.
chr1	6271176	.	C	.	.	LowGQX	END=6271180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6271925	.	A	.	.	LowGQX	END=6271967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	6271968	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	6271969	.	C	.	.	LowGQX	END=6271982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6271983	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6271984	.	A	.	.	LowGQX	END=6271989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6271990	.	G	T	3.07	LowGQX;LowQD;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=1.54;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:30,0,30:60:3:0.500
chr1	6271991	.	A	.	.	LowGQX	END=6272032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6272033	.	A	.	.	LowGQX	END=6272115	GT	./.
chr1	6272289	.	A	.	.	LowGQX	END=6272290	GT	./.
chr1	6272291	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6272292	.	A	.	.	LowGQX	.	GT	./.
chr1	6272293	.	C	.	.	LowGQX	END=6272297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6272298	.	A	.	.	LowGQX	.	GT	./.
chr1	6272299	.	G	.	.	LowGQX	END=6272301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6272302	.	A	.	.	LowGQX	.	GT	./.
chr1	6272303	.	G	.	.	LowGQX	END=6272305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6272306	.	A	.	.	LowGQX	END=6272308	GT	./.
chr1	6272309	.	C	.	.	LowGQX	END=6272318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6272319	.	A	.	.	LowGQX	.	GT	./.
chr1	6272320	.	G	.	.	LowGQX	END=6272322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6272323	.	C	.	.	LowGQX	END=6272325	GT	./.
chr1	6272326	.	G	.	.	LowGQX	END=6272328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6272329	.	A	.	.	LowGQX	.	GT	./.
chr1	6272330	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6272331	.	A	.	.	LowGQX	.	GT	./.
chr1	6272332	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6272333	.	G	.	.	LowGQX	.	GT	./.
chr1	6272334	.	A	.	.	LowGQX	END=6272347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6272348	.	C	.	.	LowGQX	END=6272478	GT	./.
chr1	6272718	.	C	.	.	LowGQX	END=6272817	GT	./.
chr1	6273124	.	A	.	.	LowGQX	END=6273245	GT	./.
chr1	6278340	.	C	.	.	LowGQX	END=6278439	GT	./.
chr1	6279294	.	A	.	.	LowGQX	END=6279344	GT	./.
chr1	6279345	.	A	.	.	LowGQX	END=6279385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6279386	.	T	.	.	LowGQX	.	GT	./.
chr1	6279387	.	C	.	.	LowGQX	END=6279457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6279458	.	C	A	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	6279459	.	C	.	.	LowGQX	END=6279469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6285138	.	C	.	.	LowGQX	END=6285142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6285143	.	C	.	.	LowGQX	.	GT	./.
chr1	6285144	.	A	.	.	LowGQX	END=6285145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6285146	.	G	.	.	LowGQX	END=6285147	GT	./.
chr1	6285148	.	C	.	.	LowGQX	END=6285149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6285150	.	A	.	.	LowGQX	.	GT	./.
chr1	6285151	.	C	.	.	LowGQX	END=6285167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6285168	.	A	.	.	LowGQX	END=6285169	GT	./.
chr1	6285170	.	A	.	.	LowGQX	END=6285173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6285174	.	A	.	.	LowGQX	.	GT	./.
chr1	6285175	.	G	.	.	LowGQX	END=6285180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6285181	.	T	.	.	LowGQX	.	GT	./.
chr1	6285182	.	G	.	.	LowGQX	END=6285206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6285207	.	T	.	.	LowGQX	.	GT	./.
chr1	6285208	.	A	.	.	LowGQX	END=6285209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6285210	.	T	.	.	LowGQX	.	GT	./.
chr1	6285211	.	C	.	.	LowGQX	END=6285214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6285215	.	T	.	.	LowGQX	.	GT	./.
chr1	6285216	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6285217	.	C	.	.	LowGQX	.	GT	./.
chr1	6285218	.	A	.	.	LowGQX	END=6285223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6285224	.	G	.	.	LowGQX	END=6285225	GT	./.
chr1	6285226	.	G	.	.	LowGQX	END=6285227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6285228	.	A	.	.	LowGQX	END=6285229	GT	./.
chr1	6285230	.	T	.	.	LowGQX	END=6285232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6285233	.	T	.	.	LowGQX	.	GT	./.
chr1	6285234	.	G	.	.	LowGQX	END=6285242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6285243	.	T	.	.	LowGQX	.	GT	./.
chr1	6285244	.	C	.	.	LowGQX	END=6285245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6285246	.	T	.	.	LowGQX	.	GT	./.
chr1	6285247	.	C	.	.	LowGQX	END=6285251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6285252	.	G	.	.	LowGQX	END=6285253	GT	./.
chr1	6285254	.	T	.	.	LowGQX	END=6285255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6285256	.	G	.	.	LowGQX	.	GT	./.
chr1	6285257	.	A	.	.	LowGQX	END=6285265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6285266	.	G	.	.	LowGQX	.	GT	./.
chr1	6285267	.	A	.	.	LowGQX	END=6285324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6291960	.	A	.	.	LowGQX	END=6292181	GT	./.
chr1	6293532	.	A	.	.	LowGQX	END=6293560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6293561	.	A	.	.	LowGQX	.	GT	./.
chr1	6293562	.	C	.	.	LowGQX	END=6293564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6293565	.	T	.	.	LowGQX	.	GT	./.
chr1	6293566	.	A	.	.	LowGQX	END=6293570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6293571	.	A	.	.	LowGQX	.	GT	./.
chr1	6293572	.	G	.	.	LowGQX	END=6293575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6293576	.	A	.	.	LowGQX	END=6293577	GT	./.
chr1	6293578	.	A	.	.	LowGQX	END=6293579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6293580	.	A	.	.	LowGQX	.	GT	./.
chr1	6293581	.	G	.	.	LowGQX	END=6293593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6293594	.	A	.	.	LowGQX	END=6293595	GT	./.
chr1	6293596	.	T	.	.	LowGQX	END=6293598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6293599	.	A	.	.	LowGQX	.	GT	./.
chr1	6293600	.	G	.	.	LowGQX	END=6293602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6293603	.	T	.	.	LowGQX	.	GT	./.
chr1	6293604	.	G	.	.	LowGQX	END=6293612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6293613	.	G	.	.	LowGQX	.	GT	./.
chr1	6293614	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6293615	.	G	.	.	LowGQX	END=6293616	GT	./.
chr1	6293617	.	A	.	.	LowGQX	END=6293622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6293623	.	T	.	.	LowGQX	END=6293642	GT	./.
chr1	6293643	.	A	.	.	LowGQX	END=6293648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6293649	.	G	.	.	LowGQX	.	GT	./.
chr1	6293650	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6293651	.	C	.	.	LowGQX	END=6293652	GT	./.
chr1	6293653	.	G	.	.	LowGQX	END=6293654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6293655	.	T	.	.	LowGQX	.	GT	./.
chr1	6293656	.	G	.	.	LowGQX	END=6293658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6293659	.	A	.	.	LowGQX	END=6293660	GT	./.
chr1	6293661	.	C	.	.	LowGQX	END=6293676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6293677	.	T	.	.	LowGQX	.	GT	./.
chr1	6293678	.	G	.	.	LowGQX	END=6293691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6293692	.	G	.	.	LowGQX	.	GT	./.
chr1	6293693	.	A	.	.	LowGQX	END=6293694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6293695	.	C	.	.	LowGQX	.	GT	./.
chr1	6293696	.	A	.	.	LowGQX	END=6293697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6293698	.	A	.	.	LowGQX	.	GT	./.
chr1	6293699	.	T	.	.	LowGQX	END=6293705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6294488	.	A	.	.	LowGQX	END=6294504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6294505	.	T	.	.	LowGQX	.	GT	./.
chr1	6294506	.	C	.	.	LowGQX	END=6294544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6294545	.	T	.	.	LowGQX	END=6294587	GT	./.
chr1	6294941	.	C	.	.	LowGQX	END=6295040	GT	./.
chr1	6295764	.	C	.	.	LowGQX	END=6295973	GT	./.
chr1	6304417	.	A	.	.	LowGQX	END=6304516	GT	./.
chr1	6304599	.	G	.	.	LowGQX	END=6304687	GT	./.
chr1	6304688	.	A	.	.	LowGQX	END=6304698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6305157	.	C	.	.	LowGQX	END=6305190	GT	./.
chr1	6305191	.	G	.	.	LowGQX	END=6305193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6305194	.	C	.	.	LowGQX	.	GT	./.
chr1	6305195	.	C	.	.	LowGQX	END=6305289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6305290	.	T	.	.	LowGQX	END=6305292	GT	./.
chr1	6305293	.	C	.	.	LowGQX	END=6305297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6305298	.	A	.	.	LowGQX	.	GT	./.
chr1	6305299	.	G	.	.	LowGQX	END=6305302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6305303	.	C	.	.	LowGQX	.	GT	./.
chr1	6305304	.	G	.	.	LowGQX	END=6305312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6305313	.	A	.	.	LowGQX	.	GT	./.
chr1	6305314	.	C	.	.	LowGQX	END=6305315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6305316	.	A	.	.	LowGQX	.	GT	./.
chr1	6305317	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6305318	.	G	.	.	LowGQX	.	GT	./.
chr1	6305319	.	G	.	.	LowGQX	END=6305321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6305322	.	A	.	.	LowGQX	.	GT	./.
chr1	6305323	.	G	.	.	LowGQX	END=6305331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6305332	.	T	.	.	LowGQX	.	GT	./.
chr1	6305333	.	G	.	.	LowGQX	END=6305336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6305337	.	C	.	.	LowGQX	.	GT	./.
chr1	6305338	.	A	.	.	LowGQX	END=6305340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6305341	.	A	.	.	LowGQX	END=6305394	GT	./.
chr1	6305395	.	C	.	.	LowGQX	END=6305433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6305434	.	T	.	.	LowGQX	.	GT	./.
chr1	6305435	.	C	.	.	LowGQX	END=6305569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6305570	.	G	.	.	LowGQX	END=6305576	GT	./.
chr1	6309396	.	T	.	.	LowGQX	END=6310074	GT	./.
chr1	6310498	.	A	.	.	LowGQX	END=6310529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6310530	.	G	.	.	LowGQX	END=6310686	GT	./.
chr1	6311396	.	A	.	.	LowGQX	END=6311406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311407	.	A	.	.	LowGQX	.	GT	./.
chr1	6311408	.	C	.	.	LowGQX	END=6311423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311424	.	A	.	.	LowGQX	.	GT	./.
chr1	6311425	.	T	.	.	LowGQX	END=6311433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311434	.	T	.	.	LowGQX	.	GT	./.
chr1	6311435	.	G	.	.	LowGQX	END=6311443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311444	.	C	.	.	LowGQX	.	GT	./.
chr1	6311445	.	C	.	.	LowGQX	END=6311450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311451	.	G	.	.	LowGQX	END=6311531	GT	./.
chr1	6311532	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311533	.	C	.	.	LowGQX	.	GT	./.
chr1	6311534	.	G	.	.	LowGQX	END=6311535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311536	.	A	.	.	LowGQX	.	GT	./.
chr1	6311537	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311538	.	A	.	.	LowGQX	.	GT	./.
chr1	6311539	.	G	.	.	LowGQX	END=6311540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311541	.	G	.	.	LowGQX	.	GT	./.
chr1	6311542	.	C	.	.	LowGQX	END=6311545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311546	.	C	.	.	LowGQX	END=6311547	GT	./.
chr1	6311548	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311549	.	G	.	.	LowGQX	.	GT	./.
chr1	6311550	.	G	.	.	LowGQX	END=6311551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311552	.	C	.	.	LowGQX	.	GT	./.
chr1	6311553	.	G	.	.	LowGQX	END=6311557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311558	.	G	.	.	LowGQX	END=6311559	GT	./.
chr1	6311560	.	C	.	.	LowGQX	END=6311561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311562	.	T	.	.	LowGQX	.	GT	./.
chr1	6311563	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311564	.	G	.	.	LowGQX	.	GT	./.
chr1	6311565	.	G	.	.	LowGQX	END=6311566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311567	.	C	.	.	LowGQX	.	GT	./.
chr1	6311568	.	C	.	.	LowGQX	END=6311574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311575	.	T	.	.	LowGQX	.	GT	./.
chr1	6311576	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311577	.	C	.	.	LowGQX	.	GT	./.
chr1	6311578	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311579	.	G	.	.	LowGQX	.	GT	./.
chr1	6311580	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311581	.	A	.	.	LowGQX	.	GT	./.
chr1	6311582	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311583	.	C	.	.	LowGQX	.	GT	./.
chr1	6311584	.	T	.	.	LowGQX	END=6311590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6311591	.	C	.	.	LowGQX	.	GT	./.
chr1	6311592	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6313776	.	A	.	.	LowGQX	END=6314209	GT	./.
chr1	6314608	.	A	.	.	LowGQX	END=6314642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6314643	.	C	.	.	LowGQX	END=6314967	GT	./.
chr1	6324655	.	G	.	.	LowGQX	END=6324757	GT	./.
chr1	6341132	.	G	.	.	LowGQX	END=6341348	GT	./.
chr1	6342771	.	A	.	.	LowGQX	END=6342870	GT	./.
chr1	6342897	.	A	.	.	LowGQX	END=6342996	GT	./.
chr1	6354922	.	A	.	.	LowGQX	END=6354958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6354959	.	A	.	.	LowGQX	.	GT	./.
chr1	6354960	.	C	.	.	LowGQX	END=6354965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6354966	.	C	.	.	LowGQX	END=6354989	GT	./.
chr1	6354990	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6354991	.	G	.	.	LowGQX	END=6354992	GT	./.
chr1	6354993	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6354994	.	T	.	.	LowGQX	.	GT	./.
chr1	6354995	.	G	.	.	LowGQX	END=6355008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6355009	.	G	.	.	LowGQX	END=6355010	GT	./.
chr1	6355011	.	C	.	.	LowGQX	END=6355017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6355018	.	A	.	.	LowGQX	END=6355019	GT	./.
chr1	6355020	.	C	.	.	LowGQX	END=6355023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6355024	.	G	.	.	LowGQX	.	GT	./.
chr1	6355025	.	A	.	.	LowGQX	END=6355027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6355028	.	T	.	.	LowGQX	.	GT	./.
chr1	6355029	.	T	.	.	LowGQX	END=6355030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6355031	.	A	.	.	LowGQX	.	GT	./.
chr1	6355032	.	T	.	.	LowGQX	END=6355042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6366883	.	C	.	.	LowGQX	END=6366886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6366887	.	A	.	.	LowGQX	.	GT	./.
chr1	6366888	.	T	.	.	LowGQX	END=6366890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6366891	.	G	.	.	LowGQX	.	GT	./.
chr1	6366892	.	A	.	.	LowGQX	END=6366982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6378546	.	T	.	.	PASS	END=6378564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	6378565	.	G	.	.	PASS	END=6378579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	6378580	.	G	.	.	PASS	END=6378645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	6387357	.	A	.	.	LowGQX	END=6387359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6387360	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6387361	.	G	.	.	LowGQX	END=6387369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6387370	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6387371	.	C	.	.	LowGQX	END=6387383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6387384	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6387385	.	T	.	.	LowGQX	END=6387390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6387391	.	T	.	.	LowGQX	END=6387412	GT	./.
chr1	6387413	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6387414	.	C	.	.	LowGQX	END=6387418	GT	./.
chr1	6387419	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6387420	.	C	.	.	LowGQX	.	GT	./.
chr1	6387421	.	T	.	.	LowGQX	END=6387423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6387424	.	T	.	.	LowGQX	.	GT	./.
chr1	6387425	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6387426	.	G	.	.	LowGQX	END=6387427	GT	./.
chr1	6387428	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6387429	.	T	.	.	LowGQX	.	GT	./.
chr1	6387430	.	T	.	.	LowGQX	END=6387435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6387436	.	C	.	.	LowGQX	.	GT	./.
chr1	6387437	.	G	.	.	LowGQX	END=6387441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6387442	.	C	.	.	LowGQX	.	GT	./.
chr1	6387443	.	G	.	.	LowGQX	END=6387446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6387447	.	C	.	.	LowGQX	.	GT	./.
chr1	6387448	.	T	.	.	LowGQX	END=6387452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6387453	.	C	.	.	LowGQX	.	GT	./.
chr1	6387454	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6387455	.	C	.	.	LowGQX	END=6387456	GT	./.
chr1	6387457	.	T	.	.	LowGQX	END=6387465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6387466	.	C	.	.	LowGQX	.	GT	./.
chr1	6387467	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6387468	.	G	.	.	LowGQX	.	GT	./.
chr1	6387469	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6387470	.	A	.	.	LowGQX	END=6387472	GT	./.
chr1	6387473	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6387474	.	C	.	.	LowGQX	.	GT	./.
chr1	6387475	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6393533	.	T	.	.	PASS	END=6393553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	6393554	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:63:60
chr1	6393555	.	G	.	.	PASS	END=6393604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:80:60
chr1	6393605	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:70:60
chr1	6393606	.	C	.	.	PASS	END=6393632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	6399461	.	G	.	.	PASS	END=6399465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	6399466	.	A	.	.	PASS	END=6399539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	6399540	.	T	.	.	PASS	END=6399549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	6399550	.	T	.	.	LowGQX	END=6399560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	6399561	.	T	.	.	LowGQX	END=6399588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	6399589	.	T	.	.	LowGQX	END=6399617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	6399618	.	T	.	.	LowGQX	END=6399634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	6399635	.	G	.	.	LowGQX	END=6399651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6409807	.	A	.	.	LowGQX	END=6409926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6409927	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	6409928	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	6418846	.	G	.	.	LowGQX	END=6418918	GT	./.
chr1	6418919	.	T	.	.	LowGQX	END=6418922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6418923	.	A	.	.	LowGQX	.	GT	./.
chr1	6418924	.	G	.	.	LowGQX	END=6418942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6418943	.	G	.	.	LowGQX	.	GT	./.
chr1	6418944	.	C	.	.	LowGQX	END=6418945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6420622	.	C	.	.	LowGQX	END=6420721	GT	./.
chr1	6445552	.	A	.	.	LowGQX	END=6445728	GT	./.
chr1	6453284	.	G	.	.	LowGQX	END=6453461	GT	./.
chr1	6473248	.	G	.	.	LowGQX	END=6473400	GT	./.
chr1	6478920	.	A	.	.	LowGQX	END=6479219	GT	./.
chr1	6479299	.	A	.	.	LowGQX	END=6479402	GT	./.
chr1	6479605	.	C	.	.	LowGQX	END=6479908	GT	./.
chr1	6484965	.	G	.	.	PASS	END=6484981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:60
chr1	6484982	.	C	.	.	PASS	END=6485008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	6485009	.	C	.	.	PASS	END=6485012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	6485013	.	A	.	75.14	PASS	DP=23;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:18:23:45.15:60:45
chr1	6485014	.	C	.	.	PASS	END=6485018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	6485019	.	G	.	.	PASS	END=6485021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	6485022	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:24:60
chr1	6485023	.	T	.	.	PASS	END=6485045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	6485046	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:21:60
chr1	6485047	.	G	.	.	PASS	END=6485059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr1	6485060	.	G	.	.	PASS	END=6485078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:63:60
chr1	6485079	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:45:60
chr1	6485080	.	A	.	.	PASS	END=6485112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	6485113	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:69:60
chr1	6485114	.	C	.	.	PASS	END=6485119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	6485120	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:57:60
chr1	6485121	.	G	.	.	PASS	END=6485131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	6485132	.	C	.	.	PASS	END=6485156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	6485157	.	A	.	.	PASS	END=6485223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	6485224	.	G	.	.	PASS	END=6485263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	6485264	.	C	.	.	PASS	END=6485360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	6488235	.	G	.	.	PASS	END=6488271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	6488272	.	C	.	.	PASS	END=6488310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	6488311	.	T	.	.	PASS	END=6488382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	6488383	.	C	.	.	PASS	END=6488420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	6488421	.	T	.	.	PASS	END=6488435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	6488436	.	G	.	.	PASS	END=6488459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:91:60
chr1	6488460	.	C	.	.	PASS	END=6488470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	6488471	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:38:60
chr1	6488472	.	T	.	.	PASS	END=6488485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	6488486	.	T	.	.	PASS	END=6488495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	6488496	.	T	.	.	PASS	END=6488497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	6488498	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chr1	6488499	.	G	.	.	PASS	END=6488502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	6488503	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:45:60
chr1	6488504	.	C	.	.	PASS	END=6488505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	6488506	.	T	.	.	PASS	END=6488507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	6488508	.	T	.	.	PASS	END=6488511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	6488512	.	T	.	.	PASS	END=6488513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	6488514	.	G	.	.	PASS	END=6488515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	6488516	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	6488517	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:21:60
chr1	6488518	.	G	.	.	PASS	END=6488519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	6488520	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	6488521	.	C	.	.	PASS	END=6488529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	6488530	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	6500263	.	T	.	.	PASS	END=6500274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	6500275	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:69:60
chr1	6500276	.	G	.	.	PASS	END=6500283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	6500284	.	A	.	.	PASS	END=6500285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	6500286	.	G	.	.	PASS	END=6500289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	6500290	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:57:60
chr1	6500291	.	C	.	.	PASS	END=6500307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	6500308	.	C	.	.	PASS	END=6500339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	6500340	.	G	.	.	PASS	END=6500375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	6500376	.	A	.	.	PASS	END=6500464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	6500465	.	G	.	.	PASS	END=6500494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	6500495	.	T	.	.	PASS	END=6500504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr1	6500505	.	G	.	.	PASS	END=6500522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	6500523	.	G	.	.	PASS	END=6500531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	6500532	.	A	.	.	PASS	END=6500541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:59
chr1	6500542	.	G	.	.	PASS	END=6500549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:59
chr1	6500550	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:59
chr1	6500551	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:66:59
chr1	6500635	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:45:59
chr1	6500636	.	G	.	.	PASS	END=6500641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:59
chr1	6500642	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:57:59
chr1	6500643	.	G	.	.	PASS	END=6500649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:59
chr1	6500650	.	A	C	9.55	LowGQX;LowQD;SB	BaseQRankSum=-0.071;DP=31;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=15.3547;MQ=60;MQ0=0;MQRankSum=-1.205;QD=0.31;ReadPosRankSum=-0.780;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:24,7:31:39.03:39,0,191:60:10:0.226
chr1	6500651	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:45:60
chr1	6500652	.	C	.	.	PASS	END=6500656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	6500657	.	G	C	96.59	SB	BaseQRankSum=0.508;DP=32;Dels=0.00;FS=17.433;HRun=6;HaplotypeScore=17.1981;MQ=60;MQ0=0;MQRankSum=-1.403;QD=3.02;ReadPosRankSum=-4.249;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:22,10:32:99:127,0,388:60:97:0.313
chr1	6500658	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:66:60
chr1	6500659	.	C	.	.	PASS	END=6500663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	6500664	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:2:60
chr1	6500665	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:60:60
chr1	6500666	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:27:60
chr1	6500667	.	C	.	.	PASS	END=6500670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	6500671	.	G	.	.	PASS	END=6500675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	6500676	.	T	.	60.09	PASS	DP=20;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:16:20:30.09:60:30
chr1	6500677	.	C	.	.	PASS	END=6500683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	6500684	.	A	.	.	PASS	END=6500685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	6500686	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:57:60
chr1	6500687	.	T	.	.	PASS	END=6500689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chr1	6500690	.	G	.	.	PASS	END=6500691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	6500692	.	T	.	.	PASS	END=6500693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	6500694	.	C	.	.	PASS	END=6500695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	6500696	.	C	.	.	PASS	END=6500701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	6500702	.	T	.	.	PASS	END=6500704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	6500705	.	G	.	.	PASS	END=6500709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	6500710	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:45:60
chr1	6500711	.	C	.	.	PASS	END=6500717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	6500718	.	G	.	.	PASS	END=6500734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	6500735	.	C	.	.	PASS	END=6500737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	6500738	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr1	6500739	.	C	.	.	PASS	END=6500746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	6500747	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:60
chr1	6500748	.	C	.	.	PASS	END=6500816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	6500817	.	C	.	.	PASS	END=6500896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:58
chr1	6500897	.	C	.	.	PASS	END=6500901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:93:59
chr1	6500902	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:72:60
chr1	6500903	.	C	.	.	PASS	END=6500919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	6500943	.	G	.	.	PASS	END=6500965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	6500966	.	G	.	.	PASS	END=6500972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	6500973	.	C	.	.	PASS	END=6501001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	6501002	.	G	.	.	PASS	END=6501049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	6501050	.	G	.	.	PASS	END=6501142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	6501143	.	C	.	.	PASS	END=6501176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	6504490	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:99:60
chr1	6504491	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:75:60
chr1	6504492	.	C	.	.	PASS	END=6504528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:84:60
chr1	6504529	.	C	.	.	PASS	END=6504543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	6504544	.	G	.	.	PASS	END=6504586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	6504587	.	A	.	.	PASS	END=6504693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	6504694	.	T	.	.	PASS	END=6504732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	6504733	.	C	.	.	PASS	END=6504753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	6504754	.	C	.	.	PASS	END=6504774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	6504775	.	G	.	.	PASS	END=6504793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	6505673	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:99:60
chr1	6505674	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:71:60
chr1	6505675	.	C	.	.	PASS	END=6505746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:91:60
chr1	6505747	.	G	.	.	PASS	END=6505815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:58
chr1	6505816	.	A	.	.	PASS	END=6505817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:78:58
chr1	6505818	.	A	C	32.21	LowQD;SB	BaseQRankSum=-2.394;DP=48;Dels=0.00;FS=27.711;HRun=5;HaplotypeScore=23.6730;MQ=58;MQ0=0;MQRankSum=-0.721;QD=0.67;ReadPosRankSum=-3.085;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,20:48:62.20:62,0,565:58:32:0.417
chr1	6505819	.	C	.	.	PASS	END=6505823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:57
chr1	6505824	.	A	.	63.10	PASS	DP=25;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:20:25:33.10:59:33
chr1	6505825	.	C	.	.	PASS	END=6505826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:59
chr1	6505827	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:24:59
chr1	6505828	.	C	.	.	PASS	END=6505831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:59
chr1	6505832	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:59
chr1	6505833	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:59
chr1	6505834	.	C	.	.	PASS	END=6505838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:59
chr1	6505839	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:42:59
chr1	6505840	.	T	.	36	LowGQX	DP=17;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:13:17:6.01:59:6
chr1	6505841	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:24:59
chr1	6505842	.	C	.	.	PASS	END=6505850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:59
chr1	6505851	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:21:59
chr1	6505852	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:48:59
chr1	6505853	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:30:59
chr1	6505854	.	C	.	.	PASS	END=6505861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:56
chr1	6505862	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:57:56
chr1	6505863	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:36:56
chr1	6505864	.	G	.	15.06	LowGQX	DP=23;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:16:23:0.13:56:0
chr1	6505865	.	G	.	.	PASS	END=6505869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:54
chr1	6505870	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:27:54
chr1	6505871	.	A	.	.	PASS	END=6505872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:54:54
chr1	6505873	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:78:54
chr1	6505874	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:48:54
chr1	6505875	.	G	.	.	PASS	END=6505879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:53
chr1	6505880	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:99:53
chr1	6505881	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:74:53
chr1	6505882	.	C	.	.	PASS	END=6505896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:53
chr1	6505897	.	C	.	.	PASS	END=6505912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:54
chr1	6505913	.	C	.	.	PASS	END=6505936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:53
chr1	6505937	.	T	.	.	PASS	END=6506042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:53
chr1	6506043	.	T	.	.	PASS	END=6506046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:56
chr1	6508590	.	C	.	.	PASS	END=6508633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:84:60
chr1	6508634	.	G	.	.	PASS	END=6508670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	6508671	.	C	.	.	PASS	END=6508771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	6508772	.	G	.	.	PASS	END=6508783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	6508784	.	G	.	.	PASS	END=6508808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:96:60
chr1	6508809	.	C	.	.	PASS	END=6508831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	6508832	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:96:60
chr1	6508833	.	G	.	.	PASS	END=6508834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:46:60
chr1	6508835	.	A	.	.	PASS	END=6508855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	6508856	.	C	.	.	PASS	END=6508861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	6508862	.	G	.	.	PASS	END=6508863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	6508864	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	6508865	.	G	.	.	PASS	END=6508867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	6508868	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	6508869	.	G	.	.	PASS	END=6508871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	6508872	.	C	.	.	LowGQX	END=6508879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	6508880	.	C	.	.	LowGQX	END=6508898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	6508899	.	C	.	.	LowGQX	END=6508903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	6508904	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	6508905	.	G	.	.	LowGQX	END=6508920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	6508921	.	G	.	.	LowGQX	END=6508922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	6508923	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	6508924	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	6508925	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:9:60
chr1	6508926	.	C	.	.	LowGQX	END=6508940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	6508941	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:60
chr1	6508942	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr1	6508943	.	T	.	.	LowGQX	END=6508945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:15:60
chr1	6508946	.	C	.	.	LowGQX	END=6508950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	6508951	.	A	.	.	LowGQX	END=6508955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:60
chr1	6508956	.	G	.	.	LowGQX	END=6508979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	6508980	.	C	.	.	PASS	END=6508982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	6508983	.	A	.	.	LowGQX	END=6508991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:60
chr1	6508992	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	6508993	.	C	.	.	LowGQX	END=6508994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:60
chr1	6508995	.	G	.	.	PASS	END=6508996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	6508997	.	G	.	.	LowGQX	END=6508999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	6509000	.	C	.	.	PASS	END=6509004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	6509005	.	A	.	.	LowGQX	END=6509006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:60
chr1	6509007	.	G	.	.	PASS	END=6509034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	6509035	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:42:60
chr1	6509036	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:27:60
chr1	6509037	.	C	.	.	PASS	END=6509054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	6509055	.	C	.	.	PASS	END=6509060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	6509061	.	G	.	.	PASS	END=6509074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	6509075	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:39:60
chr1	6509076	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:6:60
chr1	6509077	.	C	.	.	PASS	END=6509100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	6509101	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:36:60
chr1	6509102	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:51:60
chr1	6509103	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chr1	6509104	.	G	.	.	PASS	END=6509107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	6509108	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:42:60
chr1	6509109	.	G	.	.	PASS	END=6509124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	6509125	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:45:60
chr1	6509126	.	G	.	.	PASS	END=6509132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	6509133	.	T	.	.	PASS	END=6509176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr1	6509177	.	T	.	.	PASS	END=6509188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	6509189	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:60
chr1	6509190	.	G	.	.	PASS	END=6509202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	6511612	.	C	.	.	PASS	END=6511621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	6511622	.	G	.	.	PASS	END=6511639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	6511640	.	C	.	.	PASS	END=6511760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	6511761	.	A	.	.	PASS	END=6511777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	6511778	.	G	.	.	PASS	END=6511794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	6511795	.	A	.	.	PASS	END=6511834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	6511835	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:63:60
chr1	6511836	.	C	.	.	PASS	END=6511849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	6511850	.	C	.	.	PASS	END=6511878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	6511879	.	G	.	.	PASS	END=6511908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	6511909	.	C	.	.	PASS	END=6511940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	6511941	.	A	.	.	PASS	END=6512037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	6512038	.	T	.	.	PASS	END=6512072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	6512073	.	C	.	.	PASS	END=6512088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:93:60
chr1	6512089	.	G	.	.	PASS	END=6512116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr1	6512117	.	G	.	.	PASS	END=6512140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	6512141	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:99:60
chr1	6512142	.	G	.	.	PASS	END=6512144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:63:60
chr1	6512145	.	C	.	.	PASS	END=6512154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	6512155	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:69:60
chr1	6512156	.	G	.	.	PASS	END=6512157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:93:60
chr1	6512158	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:45:60
chr1	6512159	.	G	.	.	PASS	END=6512161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	6512162	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:1:60
chr1	6512163	.	G	.	.	PASS	END=6512171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:59
chr1	6512172	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:54:59
chr1	6512173	.	G	.	.	PASS	END=6512180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:59
chr1	6512181	.	A	.	.	PASS	END=6512185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:59
chr1	6512186	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:51:59
chr1	6512187	.	G	.	.	PASS	END=6512190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:59
chr1	6512191	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:59
chr1	6512192	.	C	.	.	PASS	END=6512195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:59
chr1	6512196	.	A	.	.	PASS	END=6512197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:59
chr1	6512198	.	C	.	.	PASS	END=6512201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:59
chr1	6512202	.	A	.	.	PASS	END=6512203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:30:59
chr1	6512204	.	G	.	.	PASS	END=6512207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:59
chr1	6517193	.	C	.	.	LowGQX	END=6517194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	6517195	.	C	.	.	PASS	END=6517208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	6517209	.	C	.	.	PASS	END=6517216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	6517217	.	C	.	.	PASS	END=6517250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	6517251	.	A	.	.	PASS	END=6517280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	6517281	.	C	.	.	PASS	END=6517294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	6517295	.	C	.	.	PASS	END=6517323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr1	6517324	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:61:60
chr1	6517325	.	T	.	.	PASS	END=6517392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:79:60
chr1	6517393	.	A	.	.	PASS	END=6517444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	6517445	.	C	.	.	PASS	END=6517475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	6517476	.	C	.	.	PASS	END=6517483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	6520008	.	G	.	.	PASS	END=6520031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	6520032	.	G	.	.	PASS	END=6520057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	6520058	.	G	.	.	PASS	END=6520130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	6520131	.	G	.	.	PASS	END=6520183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	6520184	.	A	.	.	PASS	END=6520208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	6520209	.	G	.	.	PASS	END=6520227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	6520228	.	A	.	.	PASS	END=6520248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	6520249	.	C	.	.	PASS	END=6520257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	6521192	.	C	.	.	LowGQX	END=6521194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6521195	.	A	.	.	LowGQX	.	GT	./.
chr1	6521196	.	A	.	.	LowGQX	END=6521200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6521201	.	C	.	.	LowGQX	END=6521202	GT	./.
chr1	6521203	.	A	.	.	LowGQX	END=6521207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6521208	.	C	.	.	LowGQX	.	GT	./.
chr1	6521209	.	C	.	.	LowGQX	END=6521211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6521212	.	T	.	.	LowGQX	.	GT	./.
chr1	6521213	.	T	.	.	LowGQX	END=6521221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6521222	.	T	.	.	LowGQX	.	GT	./.
chr1	6521223	.	T	.	.	LowGQX	END=6521235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6521236	.	A	.	.	LowGQX	END=6521238	GT	./.
chr1	6521239	.	G	.	.	LowGQX	END=6521291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6521492	.	T	.	.	PASS	END=6521518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	6521519	.	C	.	.	PASS	END=6521538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	6521539	.	G	.	.	PASS	END=6521553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	6521554	.	C	.	.	PASS	END=6521595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	6521596	.	C	.	.	PASS	END=6521703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	6521704	.	C	.	.	PASS	END=6521780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	6521781	.	C	.	.	PASS	END=6521824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	6522052	.	A	.	.	PASS	END=6522071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	6522072	.	A	.	.	PASS	END=6522158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	6522159	.	C	.	.	PASS	END=6522209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	6522210	.	T	.	.	PASS	END=6522236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	6522658	.	G	.	.	PASS	END=6522676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	6522677	.	T	.	.	PASS	END=6522757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:253:99:60
chr1	6522921	.	A	.	.	PASS	END=6522956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	6522957	.	G	.	.	PASS	END=6522974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	6522975	.	G	.	.	PASS	END=6523046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	6523047	.	G	.	.	PASS	END=6523170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	6523171	.	A	.	.	PASS	END=6523197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	6523198	.	C	.	.	PASS	END=6523209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	6524423	.	G	.	.	PASS	END=6524470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	6524471	.	A	.	.	PASS	END=6524522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:288:99:60
chr1	6524610	.	A	.	.	PASS	END=6524699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	6524700	.	G	.	.	PASS	END=6524759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr1	6524760	.	C	.	.	PASS	END=6524781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:275:99:60
chr1	6525146	.	A	.	.	PASS	END=6525278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:267:99:60
chr1	6525279	.	T	.	.	PASS	END=6525284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:60
chr1	6525498	.	A	.	.	PASS	END=6525605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	6525606	.	C	.	.	PASS	END=6525622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	6526039	.	G	.	.	PASS	END=6526111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	6526112	.	C	.	.	PASS	END=6526139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	6526140	.	C	.	.	PASS	END=6526169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	6526170	.	C	.	.	PASS	END=6526190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	6526191	.	G	.	.	PASS	END=6526198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	6527508	.	C	.	.	PASS	END=6527596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:291:99:60
chr1	6527597	.	T	.	.	PASS	END=6527658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	6527659	.	C	.	.	PASS	END=6527725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	6527834	.	C	.	.	PASS	END=6528002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	6528003	.	A	.	.	PASS	END=6528029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	6528030	.	T	.	.	PASS	END=6528074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	6528075	.	G	.	.	PASS	END=6528252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	6528253	.	G	.	.	PASS	END=6528291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	6528292	.	G	.	.	PASS	END=6528340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	6528341	.	G	.	.	PASS	END=6528383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	6528384	.	C	.	.	PASS	END=6528494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	6528495	.	C	.	.	PASS	END=6528581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	6528582	.	A	.	.	PASS	END=6528605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	6528606	.	C	.	.	PASS	END=6528619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	6528620	.	A	.	.	PASS	END=6528635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	6528636	.	C	.	.	PASS	END=6528655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:94:60
chr1	6528656	.	C	.	.	PASS	END=6528675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	6528676	.	G	.	.	PASS	END=6528693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr1	6528694	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:60:60
chr1	6528695	.	C	.	.	PASS	END=6528697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	6529051	.	C	.	.	PASS	END=6529076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	6529077	.	G	.	.	PASS	END=6529094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	6529095	.	G	.	.	PASS	END=6529112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	6529113	.	G	.	.	PASS	END=6529265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	6529266	.	T	.	.	PASS	END=6529374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	6529375	.	A	.	.	PASS	END=6529568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	6529569	.	C	.	.	PASS	END=6529589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	6529590	.	C	.	.	PASS	END=6529651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:278:99:60
chr1	6529652	.	G	.	.	PASS	END=6529728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:298:99:60
chr1	6529729	.	A	.	.	PASS	END=6529740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr1	6529741	.	A	.	.	PASS	END=6529758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	6529759	.	G	.	.	PASS	END=6529786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	6529787	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:137:99:60
chr1	6530245	.	G	.	.	PASS	END=6530271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	6530272	.	G	.	.	PASS	END=6530293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	6530294	.	A	.	.	PASS	END=6530429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	6530430	.	C	.	.	PASS	END=6530454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	6530455	.	T	.	.	PASS	END=6530466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	6530515	.	C	.	.	PASS	END=6530558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	6530559	.	C	.	.	PASS	END=6530621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	6530622	.	C	.	.	PASS	END=6530783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	6530784	.	A	.	.	PASS	END=6530941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	6530942	.	C	.	.	PASS	END=6530965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	6530965	.	C	CG	6671.17	PASS	DP=191;FS=0.000;HRun=5;HaplotypeScore=1064.0512;MQ=60;MQ0=0;QD=34.93;SB=-2451.36	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:29,160:191:99:6671,523,0:60:99:0.847
chr1	6530966	.	G	.	.	PASS	END=6530992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	6530993	.	G	.	.	PASS	END=6530995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	6530999	.	G	.	.	PASS	END=6531036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	6531037	.	C	.	.	PASS	END=6531094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	6531095	.	C	.	.	PASS	END=6531149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	6531150	.	A	.	.	PASS	END=6531182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	6531183	.	C	.	.	PASS	END=6531204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	6531205	.	C	.	.	PASS	END=6531211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	6531497	.	G	.	.	PASS	END=6531512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	6531513	.	T	.	.	PASS	END=6531534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:84:60
chr1	6531535	.	G	.	.	PASS	END=6531595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	6531596	.	G	.	.	PASS	END=6531631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	6531632	.	A	.	.	PASS	END=6531693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	6531694	.	C	.	.	PASS	END=6531725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	6531726	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:111:55:60
chr1	6531727	.	C	.	.	PASS	END=6531748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	6531767	.	C	.	.	PASS	END=6531853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	6531854	.	G	.	.	PASS	END=6531895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	6531896	.	G	.	.	PASS	END=6531919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	6532536	.	C	.	.	PASS	END=6532551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	6532552	.	G	.	.	PASS	END=6532568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	6532569	.	A	.	.	PASS	END=6532580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	6532581	.	A	.	.	PASS	END=6532700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	6532701	.	G	.	.	PASS	END=6532723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	6532724	.	A	.	.	PASS	END=6532733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	6532995	.	G	.	.	PASS	END=6533020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	6533021	.	G	.	.	PASS	END=6533032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	6533033	.	G	.	.	PASS	END=6533044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	6533045	.	C	.	.	PASS	END=6533106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	6533107	.	T	.	.	PASS	END=6533175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	6533176	.	A	.	.	PASS	END=6533214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	6533215	.	T	.	.	PASS	END=6533369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	6533370	.	C	.	.	PASS	END=6533500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	6533501	.	C	.	.	PASS	END=6533532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	6533533	.	T	.	.	PASS	END=6533562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:90:60
chr1	6533563	.	G	.	.	PASS	END=6533565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	6534022	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:73:99:59
chr1	6534023	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:72:36:59
chr1	6534024	.	G	.	.	PASS	END=6534034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:59
chr1	6534035	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:27:60
chr1	6534036	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:48:60
chr1	6534037	.	C	.	.	PASS	END=6534046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	6534047	.	C	.	.	PASS	END=6534056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	6534057	.	A	.	.	PASS	END=6534061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	6534062	.	C	.	.	PASS	END=6534077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	6534078	.	T	.	.	PASS	END=6534114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	6534115	.	C	.	.	PASS	END=6534202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	6534203	.	T	.	.	PASS	END=6534225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	6534226	.	T	.	.	PASS	END=6534264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	6534265	.	T	.	.	PASS	END=6534275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	6534460	.	A	.	.	PASS	END=6534501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	6534502	.	G	.	.	PASS	END=6534668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr1	6534669	.	T	.	.	PASS	END=6534698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:61
chr1	6535056	.	G	.	.	PASS	END=6535061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:94:60
chr1	6535062	.	C	.	.	PASS	END=6535082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	6535083	.	A	.	.	PASS	END=6535120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	6535121	.	C	.	.	PASS	END=6535204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	6535205	.	G	.	.	PASS	END=6535216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	6535217	.	T	.	144.23	PASS	DP=88;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:61:88:99:60:99
chr1	6535218	.	G	.	.	PASS	END=6535247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	6535248	.	A	.	.	PASS	END=6535249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	6535471	.	G	.	.	PASS	END=6535473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	6535474	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:55:60
chr1	6535475	.	G	.	.	PASS	END=6535479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	6535480	.	C	.	.	PASS	END=6535496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	6535497	.	C	.	.	PASS	END=6535515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	6535516	.	C	.	.	PASS	END=6535615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	6535616	.	T	.	.	PASS	END=6535633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	6535940	.	C	.	.	PASS	END=6535990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	6535991	.	C	.	.	PASS	END=6536044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	6536045	.	C	.	.	PASS	END=6536091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	6536092	.	A	.	.	PASS	END=6536114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	6536115	.	A	.	.	PASS	END=6536130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	6536131	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr1	6536132	.	G	.	.	PASS	END=6536145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	6536146	.	T	.	.	PASS	END=6536147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	6537538	.	C	.	.	PASS	END=6537575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	6537576	.	C	.	.	PASS	END=6537604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	6537605	.	G	.	.	PASS	END=6537699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	6537700	.	A	.	.	PASS	END=6537736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	6537737	.	C	.	.	PASS	END=6537755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	6537756	.	A	.	.	PASS	END=6537769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:92:60
chr1	6545342	.	C	.	.	LowGQX	END=6545503	GT	./.
chr1	6556442	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:45:60
chr1	6556443	.	A	.	60.09	PASS	DP=15;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:12:15:30.10:60:30
chr1	6556444	.	G	.	.	PASS	END=6556450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	6556451	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:11:60
chr1	6556452	.	C	.	.	PASS	END=6556454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	6556455	.	G	.	.	PASS	END=6556462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	6556463	.	T	.	.	PASS	END=6556472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	6556473	.	G	.	.	PASS	END=6556483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	6556484	.	G	.	.	PASS	END=6556496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	6556497	.	G	.	.	PASS	END=6556527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	6556528	.	T	.	.	PASS	END=6556538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:60
chr1	6556539	.	T	.	.	PASS	END=6556541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	6556542	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:65:60
chr1	6556543	.	G	.	.	PASS	END=6556606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	6556607	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:63:60
chr1	6556608	.	T	.	.	PASS	END=6556612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	6556613	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:57:60
chr1	6556614	.	G	.	.	PASS	END=6556649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	6556650	.	G	.	.	PASS	END=6556656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:66:60
chr1	6556657	.	T	.	.	PASS	END=6556658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:57:60
chr1	6556659	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:38:60
chr1	6556660	.	G	.	.	PASS	END=6556662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	6556663	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:30:60
chr1	6556664	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:69:60
chr1	6556665	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:30:60
chr1	6556666	.	C	.	.	PASS	END=6556673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr1	6556674	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:30:60
chr1	6556675	.	T	.	.	PASS	END=6556680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	6556945	.	A	.	.	LowGQX	END=6556946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	6556947	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	6556948	.	C	.	.	LowGQX	END=6556953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	6556954	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	6556955	.	G	.	.	LowGQX	END=6556959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	6556960	.	T	.	.	LowGQX	END=6556961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	6556962	.	C	.	.	LowGQX	END=6556966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	6556967	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	6556968	.	G	.	.	LowGQX	END=6556969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	6556970	.	G	.	.	LowGQX	END=6556971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	6556972	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:60
chr1	6556973	.	G	.	.	LowGQX	END=6556974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	6556975	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:6:60
chr1	6556976	.	G	.	.	LowGQX	END=6556988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	6556989	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	6556990	.	C	.	.	LowGQX	END=6556991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	6556992	.	A	.	.	LowGQX	END=6556993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	6556994	.	G	.	.	LowGQX	END=6556995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	6556996	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	6556997	.	C	.	.	LowGQX	END=6556999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	6557000	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	6557001	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	6557002	.	A	.	.	LowGQX	END=6557003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:60
chr1	6557004	.	C	.	.	LowGQX	END=6557006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	6557007	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	6557008	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	6557009	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	6557010	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:27:60
chr1	6557011	.	A	.	48.05	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:18.06:60:18
chr1	6557012	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:9:60
chr1	6557013	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	6557014	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	6557015	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	6557016	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:21:60
chr1	6557017	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	6557018	.	C	.	.	LowGQX	END=6557022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	6557023	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	6557024	.	G	.	.	LowGQX	END=6557025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr1	6557026	.	A	.	.	LowGQX	END=6557027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:60
chr1	6557028	.	C	.	.	LowGQX	END=6557030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	6557031	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	6557032	.	C	.	.	LowGQX	END=6557033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	6557034	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	6557035	.	T	.	.	LowGQX	END=6557036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	6557037	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	6557038	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	6557039	.	G	.	.	PASS	END=6557041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	6557042	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	6557043	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	6557044	.	A	.	.	LowGQX	END=6557051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	6557052	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	6557053	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	6557054	.	C	.	.	PASS	END=6557055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	6557056	.	G	.	.	LowGQX	END=6557059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	6557060	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	6557061	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	6557062	.	C	.	.	PASS	END=6557064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	6557065	.	G	.	.	LowGQX	END=6557067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	6557068	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	6557069	.	G	.	.	LowGQX	END=6557070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	6557071	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	6557072	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	6557073	.	C	.	.	PASS	END=6557076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	6557077	.	T	.	.	LowGQX	END=6557078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	6557079	.	C	.	.	PASS	END=6557081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	6557082	.	C	.	.	LowGQX	END=6557083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	6557084	.	A	.	.	PASS	END=6557085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	6557086	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	6557087	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	6557088	.	T	.	.	LowGQX	END=6557091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	6557092	.	C	.	.	LowGQX	END=6557096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	6557097	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	6557098	.	C	.	.	LowGQX	END=6557104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	6557242	.	A	.	.	PASS	END=6557269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:72:60
chr1	6557270	.	G	.	.	PASS	END=6557312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	6557313	.	A	.	.	PASS	END=6557323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	6557324	.	C	.	.	PASS	END=6557356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	6557357	.	G	.	.	PASS	END=6557380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	6557381	.	C	.	.	PASS	END=6557387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	6557388	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	6557389	.	A	.	.	LowGQX	END=6557393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	6557394	.	C	.	.	LowGQX	END=6557396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	6557397	.	T	.	.	LowGQX	END=6557399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	6557400	.	C	.	.	LowGQX	END=6557401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6579448	.	T	.	.	PASS	END=6579555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	6579556	.	T	.	.	PASS	END=6579572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	6579573	.	C	.	.	PASS	END=6579586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	6579587	.	T	.	.	PASS	END=6579595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	6579596	.	C	.	.	PASS	END=6579606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	6579607	.	C	T	1374.59	PASS	DP=41;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=33.53;SB=-226.34	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,41:41:99:1408,108,0:60:99:1.000
chr1	6579608	.	T	.	.	PASS	END=6579622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	6585912	.	C	.	.	LowGQX	END=6586065	GT	./.
chr1	6586754	.	A	.	.	LowGQX	END=6586839	GT	./.
chr1	6586840	.	G	.	.	LowGQX	END=6586891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6589052	.	A	.	.	LowGQX	END=6589233	GT	./.
chr1	6592026	.	A	.	.	LowGQX	END=6592141	GT	./.
chr1	6592521	.	A	.	.	LowGQX	END=6592522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592523	.	C	.	.	LowGQX	END=6592524	GT	./.
chr1	6592525	.	A	.	.	LowGQX	END=6592528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592529	.	C	.	.	LowGQX	END=6592530	GT	./.
chr1	6592531	.	T	.	.	LowGQX	END=6592540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592541	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	6592542	.	T	.	.	LowGQX	END=6592555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592556	.	G	.	.	LowGQX	.	GT	./.
chr1	6592557	.	T	.	.	LowGQX	END=6592564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592565	.	C	.	.	LowGQX	.	GT	./.
chr1	6592566	.	C	.	.	LowGQX	END=6592570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592571	.	A	.	.	LowGQX	.	GT	./.
chr1	6592572	.	G	.	.	LowGQX	END=6592576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592577	.	T	.	.	LowGQX	.	GT	./.
chr1	6592578	.	G	.	.	LowGQX	END=6592580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592581	.	C	.	.	LowGQX	.	GT	./.
chr1	6592582	.	A	.	.	LowGQX	END=6592586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592587	.	A	.	.	LowGQX	.	GT	./.
chr1	6592588	.	C	.	.	LowGQX	END=6592607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592608	.	C	.	.	LowGQX	.	GT	./.
chr1	6592609	.	T	.	.	LowGQX	END=6592613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592614	.	C	.	.	LowGQX	.	GT	./.
chr1	6592615	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592616	.	G	.	.	LowGQX	.	GT	./.
chr1	6592617	.	C	.	.	LowGQX	END=6592620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592621	.	T	.	.	LowGQX	END=6592622	GT	./.
chr1	6592623	.	C	.	.	LowGQX	END=6592627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592628	.	G	.	.	LowGQX	.	GT	./.
chr1	6592629	.	C	.	.	LowGQX	END=6592633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592634	.	G	.	.	LowGQX	END=6592635	GT	./.
chr1	6592636	.	A	.	.	LowGQX	END=6592640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592641	.	C	.	.	LowGQX	.	GT	./.
chr1	6592642	.	T	.	.	LowGQX	END=6592643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592644	.	C	.	.	LowGQX	END=6592645	GT	./.
chr1	6592646	.	A	.	.	LowGQX	END=6592647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592648	.	T	.	.	LowGQX	.	GT	./.
chr1	6592649	.	C	.	.	LowGQX	END=6592654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592655	.	C	.	.	LowGQX	END=6592656	GT	./.
chr1	6592657	.	T	.	.	LowGQX	END=6592660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592661	.	T	.	.	LowGQX	END=6592671	GT	./.
chr1	6592672	.	G	.	.	LowGQX	END=6592695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592696	.	A	.	.	LowGQX	.	GT	./.
chr1	6592697	.	T	.	.	LowGQX	END=6592720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592721	.	G	.	.	LowGQX	.	GT	./.
chr1	6592722	.	T	.	.	LowGQX	END=6592725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592726	.	G	.	.	LowGQX	.	GT	./.
chr1	6592727	.	T	.	.	LowGQX	END=6592731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592732	.	C	.	.	LowGQX	.	GT	./.
chr1	6592733	.	A	.	.	LowGQX	END=6592740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6592741	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6592742	.	C	.	.	LowGQX	END=6592745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6592746	.	G	.	.	LowGQX	.	GT	./.
chr1	6592747	.	G	.	.	LowGQX	END=6592748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	6592749	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6592750	.	A	.	.	LowGQX	END=6592753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6592754	.	C	.	.	LowGQX	.	GT	./.
chr1	6592755	.	G	.	.	LowGQX	END=6592758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6592759	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6592760	.	T	.	.	LowGQX	END=6592773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6592774	.	G	.	.	LowGQX	.	GT	./.
chr1	6592775	.	G	.	.	LowGQX	END=6592778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6592779	.	A	.	.	LowGQX	.	GT	./.
chr1	6592780	.	C	.	.	LowGQX	END=6592784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6592785	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6592786	.	T	.	.	LowGQX	END=6592787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	6592788	.	G	.	.	LowGQX	.	GT	./.
chr1	6592789	.	G	.	.	LowGQX	END=6592795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6592796	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6592797	.	C	.	.	LowGQX	END=6592814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6592815	.	C	.	.	LowGQX	.	GT	./.
chr1	6592816	.	C	.	.	LowGQX	END=6592820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6592821	.	C	.	.	LowGQX	.	GT	./.
chr1	6592822	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6593338	.	A	.	.	LowGQX	END=6593503	GT	./.
chr1	6601888	.	A	.	.	LowGQX	END=6601970	GT	./.
chr1	6601971	.	A	.	.	LowGQX	END=6601989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6604884	.	A	.	.	LowGQX	END=6604984	GT	./.
chr1	6605103	.	A	.	.	LowGQX	END=6605242	GT	./.
chr1	6609629	.	A	.	.	LowGQX	END=6609760	GT	./.
chr1	6610454	.	A	.	.	LowGQX	END=6610677	GT	./.
chr1	6614154	.	G	.	.	LowGQX	END=6614573	GT	./.
chr1	6615432	.	G	.	.	PASS	END=6615438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	6615439	.	G	.	.	PASS	END=6615463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	6615464	.	C	.	.	PASS	END=6615587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr1	6615588	.	A	.	.	PASS	END=6615610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	6615611	.	A	.	.	PASS	END=6615625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	6615626	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:128:99:60
chr1	6630967	.	A	.	.	PASS	END=6630990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	6630991	.	G	.	.	PASS	END=6631119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	6631120	.	A	.	.	PASS	END=6631249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:86:60
chr1	6631250	.	T	.	.	PASS	END=6631275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	6631276	.	G	.	.	PASS	END=6631277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	6634689	.	A	.	.	PASS	END=6634721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	6634722	.	G	.	.	PASS	END=6634786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	6634787	.	A	.	.	PASS	END=6634897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	6634898	.	G	.	.	PASS	END=6634954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	6634955	.	A	.	.	PASS	END=6635006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	6635007	.	T	.	165.42	PASS	DP=112;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:79:112:99:60:99
chr1	6635008	.	T	.	.	PASS	END=6635015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	6635016	.	C	.	199.88	PASS	DP=114;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:83:114:99:60:99
chr1	6635017	.	C	.	.	PASS	END=6635147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	6635148	.	G	.	.	PASS	END=6635227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	6635228	.	A	.	.	PASS	END=6635230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	6635231	.	A	G	4449.28	PASS	DP=156;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=12.4551;MQ=60;MQ0=0;QD=28.52;SB=-2404.88	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,155:156:99:4449,337,0:60:99:1.000
chr1	6635232	.	A	.	.	PASS	END=6635386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	6635387	.	G	.	.	PASS	END=6635427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	6635428	.	C	.	.	PASS	END=6635446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	6635447	.	T	.	.	PASS	END=6635454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	6636473	.	A	.	.	PASS	END=6636538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	6636539	.	A	.	.	PASS	END=6636611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	6636612	.	C	.	.	PASS	END=6636689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	6637008	.	A	.	.	PASS	END=6637039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	6637040	.	C	.	.	PASS	END=6637113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	6637114	.	C	.	.	PASS	END=6637132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	6638711	.	A	.	.	PASS	END=6638780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	6638781	.	C	.	.	PASS	END=6638934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	6638935	.	T	.	.	PASS	END=6638984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	6638985	.	T	.	.	PASS	END=6639018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	6639019	.	G	.	.	PASS	END=6639145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	6639146	.	C	.	.	PASS	END=6639183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	6639184	.	C	.	.	PASS	END=6639338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	6639339	.	A	.	.	PASS	END=6639559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	6639560	.	G	.	.	PASS	END=6639617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	6639618	.	T	.	.	PASS	END=6639639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	6639640	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:67:60
chr1	6639641	.	C	.	.	PASS	END=6639646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	6640668	.	C	.	.	LowGQX	END=6641180	GT	./.
chr1	6641181	.	G	.	.	LowGQX	END=6641204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6641205	.	C	.	.	LowGQX	.	GT	./.
chr1	6641206	.	C	.	.	LowGQX	END=6641232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6641233	.	C	.	.	LowGQX	.	GT	./.
chr1	6641234	.	C	.	.	LowGQX	END=6641237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6641238	.	G	.	.	LowGQX	.	GT	./.
chr1	6641239	.	T	.	.	LowGQX	END=6641260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6641261	.	A	.	.	LowGQX	.	GT	./.
chr1	6641262	.	A	.	.	LowGQX	END=6641280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6641281	.	C	.	.	LowGQX	.	GT	./.
chr1	6641282	.	A	.	.	LowGQX	END=6641286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6641287	.	A	.	.	LowGQX	.	GT	./.
chr1	6641288	.	C	.	.	LowGQX	END=6641302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6641303	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	6641304	.	T	.	.	LowGQX	END=6641317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6641318	.	T	.	.	LowGQX	.	GT	./.
chr1	6641319	.	T	.	.	LowGQX	END=6641329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6641330	.	G	.	.	LowGQX	.	GT	./.
chr1	6641331	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6641332	.	T	.	.	LowGQX	END=6641361	GT	./.
chr1	6642116	.	A	.	.	LowGQX	END=6642243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6642244	.	G	.	.	LowGQX	END=6642289	GT	./.
chr1	6642290	.	C	.	.	LowGQX	END=6642292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6642293	.	T	.	.	LowGQX	.	GT	./.
chr1	6642294	.	G	.	.	LowGQX	END=6642297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6642298	.	G	.	.	LowGQX	.	GT	./.
chr1	6642299	.	T	.	.	LowGQX	END=6642314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6642315	.	T	.	.	LowGQX	END=6642316	GT	./.
chr1	6642317	.	A	.	.	LowGQX	END=6642322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6642323	.	A	.	.	LowGQX	.	GT	./.
chr1	6642324	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6642325	.	T	.	.	LowGQX	.	GT	./.
chr1	6642326	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6642327	.	C	.	.	LowGQX	.	GT	./.
chr1	6642328	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6642329	.	T	.	.	LowGQX	.	GT	./.
chr1	6642330	.	C	.	.	LowGQX	END=6642331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6642332	.	G	.	.	LowGQX	.	GT	./.
chr1	6642333	.	C	.	.	LowGQX	END=6642339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6642340	.	T	.	.	LowGQX	.	GT	./.
chr1	6642341	.	A	.	.	LowGQX	END=6642347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6642348	.	A	.	.	LowGQX	.	GT	./.
chr1	6642349	.	G	.	.	LowGQX	END=6642358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6642359	.	G	.	.	LowGQX	.	GT	./.
chr1	6642360	.	G	.	.	LowGQX	END=6642361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6645977	.	A	.	.	LowGQX	END=6646092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6646753	.	A	.	.	LowGQX	END=6646794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6646795	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	6646796	.	G	.	.	LowGQX	END=6646828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6646829	.	A	.	.	LowGQX	END=6647016	GT	./.
chr1	6647017	.	G	.	.	LowGQX	END=6647028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647029	.	A	.	.	LowGQX	.	GT	./.
chr1	6647030	.	C	.	.	LowGQX	END=6647035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647036	.	A	.	.	LowGQX	.	GT	./.
chr1	6647037	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647038	.	G	.	.	LowGQX	.	GT	./.
chr1	6647039	.	T	.	.	LowGQX	END=6647040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647041	.	C	.	.	LowGQX	END=6647042	GT	./.
chr1	6647043	.	T	.	.	LowGQX	END=6647052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647053	.	T	.	.	LowGQX	END=6647054	GT	./.
chr1	6647055	.	G	.	.	LowGQX	END=6647058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647059	.	C	.	.	LowGQX	.	GT	./.
chr1	6647060	.	T	.	.	LowGQX	END=6647082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647083	.	A	.	.	LowGQX	.	GT	./.
chr1	6647084	.	T	.	.	LowGQX	END=6647115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647116	.	T	.	.	LowGQX	.	GT	./.
chr1	6647117	.	T	.	.	LowGQX	END=6647118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647119	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	6647120	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647121	.	A	.	.	LowGQX	.	GT	./.
chr1	6647122	.	C	.	.	LowGQX	END=6647123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647124	.	A	.	.	LowGQX	.	GT	./.
chr1	6647125	.	T	.	.	LowGQX	END=6647128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647129	.	T	.	.	LowGQX	.	GT	./.
chr1	6647130	.	C	.	.	LowGQX	END=6647132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647133	.	A	.	.	LowGQX	.	GT	./.
chr1	6647134	.	C	.	.	LowGQX	END=6647152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647153	.	A	.	.	LowGQX	.	GT	./.
chr1	6647154	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647155	.	A	.	.	LowGQX	.	GT	./.
chr1	6647156	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647157	.	T	.	.	LowGQX	.	GT	./.
chr1	6647158	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647159	.	A	.	.	LowGQX	.	GT	./.
chr1	6647160	.	T	.	.	LowGQX	END=6647166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647167	.	G	.	.	LowGQX	END=6647201	GT	./.
chr1	6647259	.	T	.	.	LowGQX	END=6647358	GT	./.
chr1	6647536	.	A	.	.	LowGQX	.	GT	./.
chr1	6647537	.	G	.	.	LowGQX	END=6647543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647544	.	A	.	.	LowGQX	.	GT	./.
chr1	6647545	.	C	.	.	LowGQX	END=6647555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647556	.	T	.	.	LowGQX	END=6647613	GT	./.
chr1	6647614	.	A	.	.	LowGQX	END=6647618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647619	.	T	.	.	LowGQX	END=6647621	GT	./.
chr1	6647622	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647623	.	T	.	.	LowGQX	.	GT	./.
chr1	6647624	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647625	.	T	.	.	LowGQX	END=6647627	GT	./.
chr1	6647628	.	G	.	.	LowGQX	END=6647629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647630	.	G	.	.	LowGQX	.	GT	./.
chr1	6647631	.	G	.	.	LowGQX	END=6647633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647634	.	T	.	.	LowGQX	.	GT	./.
chr1	6647635	.	G	.	.	LowGQX	END=6647640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647641	.	A	.	.	LowGQX	END=6647642	GT	./.
chr1	6647643	.	C	.	.	LowGQX	END=6647648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647649	.	T	.	.	LowGQX	.	GT	./.
chr1	6647650	.	C	.	.	LowGQX	END=6647651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647652	.	A	.	.	LowGQX	.	GT	./.
chr1	6647653	.	G	.	.	LowGQX	END=6647654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647655	.	C	.	.	LowGQX	.	GT	./.
chr1	6647656	.	G	.	.	LowGQX	END=6647659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647660	.	T	.	.	LowGQX	.	GT	./.
chr1	6647661	.	G	.	.	LowGQX	END=6647674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647675	.	C	.	.	LowGQX	.	GT	./.
chr1	6647676	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647677	.	T	.	.	LowGQX	.	GT	./.
chr1	6647678	.	C	.	.	LowGQX	END=6647679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647680	.	A	.	.	LowGQX	.	GT	./.
chr1	6647681	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647682	.	G	.	.	LowGQX	.	GT	./.
chr1	6647683	.	C	.	.	LowGQX	END=6647690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6647691	.	A	.	.	LowGQX	.	GT	./.
chr1	6647692	.	G	.	.	LowGQX	END=6647694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6648118	.	A	.	.	LowGQX	END=6648126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	6648127	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	6648128	.	G	.	.	LowGQX	END=6648132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	6648133	.	C	.	.	PASS	END=6648148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	6648149	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	6648150	.	C	.	.	PASS	END=6648158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	6648159	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	6648160	.	T	.	.	PASS	END=6648162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	6648163	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	6648164	.	C	.	.	PASS	END=6648168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	6648169	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	6648170	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr1	6648171	.	G	.	14.90	LowGQX	DP=12;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:9:12:0.13:60:0
chr1	6648172	.	G	.	.	LowGQX	END=6648173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	6648174	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	6648175	.	A	.	.	LowGQX	END=6648177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	6648178	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	6648179	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	6648180	.	C	.	.	PASS	END=6648181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	6648182	.	A	.	.	LowGQX	END=6648183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr1	6648184	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	6648185	.	T	.	.	LowGQX	END=6648188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:60
chr1	6648189	.	C	.	.	PASS	END=6648191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	6648192	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	6648193	.	C	.	.	PASS	END=6648198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	6648199	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	6648200	.	A	.	.	PASS	END=6648202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	6648203	.	C	.	.	LowGQX	END=6648205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:60
chr1	6648206	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	6648207	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	6648208	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	6648209	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	6648210	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	6648211	.	A	.	.	LowGQX	END=6648212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:27:60
chr1	6648213	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	6648214	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr1	6648215	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	6648216	.	C	.	.	LowGQX	END=6648218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:27:60
chr1	6648219	.	C	.	.	PASS	END=6648222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	6648223	.	T	.	.	LowGQX	END=6648224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:24:60
chr1	6648225	.	C	.	.	PASS	END=6648226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	6648227	.	A	.	.	LowGQX	END=6648228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:24:60
chr1	6648229	.	C	.	.	PASS	END=6648230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	6648231	.	C	.	.	LowGQX	END=6648232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:27:60
chr1	6648233	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	6648234	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	6648235	.	G	.	.	PASS	END=6648236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	6648237	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	6648238	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	6648239	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	6648240	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	6648241	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	6648242	.	C	.	.	PASS	END=6648243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	6648244	.	T	.	.	LowGQX	END=6648258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:60
chr1	6648336	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	6648337	.	G	.	4.58	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.01:60:0
chr1	6648338	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	6648339	.	C	.	.	LowGQX	END=6648364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	6648365	.	A	.	.	LowGQX	END=6648366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6648367	.	A	.	.	LowGQX	.	GT	./.
chr1	6648368	.	C	.	.	LowGQX	END=6648374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	6648375	.	A	.	.	LowGQX	END=6648376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	6648377	.	G	.	.	LowGQX	END=6648380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	6648381	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	6648382	.	T	.	.	LowGQX	END=6648394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	6648395	.	T	.	32.98	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3:60:3
chr1	6648396	.	C	.	.	LowGQX	END=6648398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	6648399	.	T	.	.	LowGQX	.	GT	./.
chr1	6648400	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6648401	.	A	.	.	LowGQX	END=6648439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6648440	.	T	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	6648441	.	G	.	.	LowGQX	END=6648474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6648475	.	T	.	.	LowGQX	.	GT	./.
chr1	6648476	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6648477	.	C	.	.	LowGQX	.	GT	./.
chr1	6648478	.	C	.	.	LowGQX	END=6648504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6648811	.	T	.	.	LowGQX	END=6648910	GT	./.
chr1	6648974	.	A	.	.	LowGQX	END=6649274	GT	./.
chr1	6653423	.	G	.	.	LowGQX	END=6653720	GT	./.
chr1	6655424	.	A	.	.	LowGQX	END=6655445	GT	./.
chr1	6655446	.	C	.	.	LowGQX	END=6655475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6655476	.	A	.	.	LowGQX	.	GT	./.
chr1	6655477	.	C	.	.	LowGQX	END=6655478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6655479	.	A	.	.	LowGQX	.	GT	./.
chr1	6655480	.	T	.	.	LowGQX	END=6655481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6655482	.	A	.	.	LowGQX	.	GT	./.
chr1	6655483	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6655484	.	A	.	.	LowGQX	.	GT	./.
chr1	6655485	.	C	.	.	LowGQX	END=6655596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6655597	.	T	.	.	LowGQX	.	GT	./.
chr1	6655598	.	C	.	.	LowGQX	END=6655599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6655600	.	A	.	.	LowGQX	.	GT	./.
chr1	6655601	.	C	.	.	LowGQX	END=6655619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6659105	.	A	.	.	LowGQX	END=6659514	GT	./.
chr1	6661855	.	A	.	.	LowGQX	END=6662879	GT	./.
chr1	6674037	.	G	.	.	LowGQX	END=6674196	GT	./.
chr1	6676815	.	A	.	.	LowGQX	END=6676920	GT	./.
chr1	6679861	.	A	.	.	LowGQX	END=6680009	GT	./.
chr1	6680010	.	C	.	.	LowGQX	END=6680070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6680071	.	A	.	.	LowGQX	.	GT	./.
chr1	6680072	.	G	.	.	LowGQX	END=6680097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6680098	.	A	.	.	LowGQX	.	GT	./.
chr1	6680099	.	C	.	.	LowGQX	END=6680103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6680104	.	A	.	.	LowGQX	.	GT	./.
chr1	6680105	.	T	.	.	LowGQX	END=6680109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6680110	.	C	.	.	LowGQX	.	GT	./.
chr1	6680111	.	T	.	.	LowGQX	END=6680114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6680115	.	A	.	.	LowGQX	.	GT	./.
chr1	6680116	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6680117	.	A	.	.	LowGQX	.	GT	./.
chr1	6680118	.	G	.	.	LowGQX	END=6680121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6680122	.	G	.	.	LowGQX	.	GT	./.
chr1	6680123	.	G	.	.	LowGQX	END=6680142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6680143	.	A	.	.	LowGQX	.	GT	./.
chr1	6680144	.	G	.	.	LowGQX	END=6680148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6680149	.	A	.	.	LowGQX	END=6680150	GT	./.
chr1	6680151	.	G	.	.	LowGQX	END=6680157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6680158	.	A	.	.	LowGQX	.	GT	./.
chr1	6680159	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6680160	.	C	.	.	LowGQX	END=6680235	GT	./.
chr1	6680236	.	A	.	.	LowGQX	END=6680386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6680387	.	G	.	.	LowGQX	END=6680399	GT	./.
chr1	6681469	.	A	.	.	LowGQX	END=6681575	GT	./.
chr1	6681576	.	C	.	.	LowGQX	END=6681580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6681581	.	A	.	.	LowGQX	END=6681582	GT	./.
chr1	6681583	.	C	.	.	LowGQX	END=6681585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6681586	.	G	.	.	LowGQX	END=6681588	GT	./.
chr1	6681589	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6681590	.	T	.	.	LowGQX	.	GT	./.
chr1	6681591	.	C	.	.	LowGQX	END=6681593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6681594	.	A	.	.	LowGQX	END=6681595	GT	./.
chr1	6681596	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6681597	.	T	.	.	LowGQX	END=6681598	GT	./.
chr1	6681599	.	C	.	.	LowGQX	END=6681603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6681604	.	A	.	.	LowGQX	.	GT	./.
chr1	6681605	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6681606	.	T	.	.	LowGQX	.	GT	./.
chr1	6681607	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6681608	.	T	.	.	LowGQX	.	GT	./.
chr1	6681609	.	T	.	.	LowGQX	END=6681610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6681611	.	G	.	.	LowGQX	.	GT	./.
chr1	6681612	.	T	.	.	LowGQX	END=6681613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6681614	.	T	.	.	LowGQX	END=6681615	GT	./.
chr1	6681616	.	C	.	.	LowGQX	END=6681621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6681622	.	G	.	.	LowGQX	END=6681624	GT	./.
chr1	6681625	.	C	.	.	LowGQX	END=6681627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6681628	.	G	.	.	LowGQX	END=6681630	GT	./.
chr1	6681631	.	C	.	.	LowGQX	END=6681637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6681638	.	T	.	.	LowGQX	END=6681640	GT	./.
chr1	6681641	.	G	.	.	LowGQX	END=6681644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6681645	.	T	.	.	LowGQX	.	GT	./.
chr1	6681646	.	C	.	.	LowGQX	END=6681652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6681653	.	T	.	.	LowGQX	.	GT	./.
chr1	6681654	.	C	.	.	LowGQX	END=6681683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6681684	.	T	.	.	LowGQX	.	GT	./.
chr1	6681685	.	G	.	.	LowGQX	END=6681696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6681697	.	A	.	.	LowGQX	.	GT	./.
chr1	6681698	.	C	.	.	LowGQX	END=6681699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6685206	.	G	.	.	LowGQX	END=6685365	GT	./.
chr1	6688557	.	A	.	.	LowGQX	END=6688565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688566	.	T	.	.	LowGQX	.	GT	./.
chr1	6688567	.	T	.	.	LowGQX	END=6688591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688592	.	A	.	.	LowGQX	.	GT	./.
chr1	6688593	.	T	.	.	LowGQX	END=6688597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688598	.	G	.	.	LowGQX	.	GT	./.
chr1	6688599	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688600	.	T	.	.	LowGQX	.	GT	./.
chr1	6688601	.	G	.	.	LowGQX	END=6688604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688605	.	A	.	.	LowGQX	.	GT	./.
chr1	6688606	.	T	.	.	LowGQX	END=6688616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688617	.	A	.	.	LowGQX	.	GT	./.
chr1	6688618	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688619	.	C	.	.	LowGQX	.	GT	./.
chr1	6688620	.	T	.	.	LowGQX	END=6688623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688624	.	A	.	.	LowGQX	.	GT	./.
chr1	6688625	.	G	.	.	LowGQX	END=6688628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688629	.	A	.	.	LowGQX	.	GT	./.
chr1	6688630	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688631	.	G	.	.	LowGQX	.	GT	./.
chr1	6688632	.	C	.	.	LowGQX	END=6688639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688640	.	G	.	.	LowGQX	.	GT	./.
chr1	6688641	.	G	.	.	LowGQX	END=6688643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688644	.	A	.	.	LowGQX	.	GT	./.
chr1	6688645	.	T	.	.	LowGQX	END=6688647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688648	.	G	.	.	LowGQX	.	GT	./.
chr1	6688649	.	C	.	.	LowGQX	END=6688651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688652	.	C	.	.	LowGQX	.	GT	./.
chr1	6688653	.	G	.	.	LowGQX	END=6688658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688659	.	T	.	.	LowGQX	.	GT	./.
chr1	6688660	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688661	.	C	.	.	LowGQX	.	GT	./.
chr1	6688662	.	C	.	.	LowGQX	END=6688668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688669	.	A	.	.	LowGQX	.	GT	./.
chr1	6688670	.	G	.	.	LowGQX	END=6688679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688680	.	G	.	.	LowGQX	.	GT	./.
chr1	6688681	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688682	.	C	.	.	LowGQX	END=6688693	GT	./.
chr1	6688694	.	C	.	.	LowGQX	END=6688696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688697	.	G	.	.	LowGQX	.	GT	./.
chr1	6688698	.	A	.	.	LowGQX	END=6688703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688704	.	A	.	.	LowGQX	.	GT	./.
chr1	6688705	.	A	.	.	LowGQX	END=6688710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688711	.	A	.	.	LowGQX	.	GT	./.
chr1	6688712	.	T	.	.	LowGQX	END=6688716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688717	.	T	.	.	LowGQX	.	GT	./.
chr1	6688718	.	G	.	.	LowGQX	END=6688722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688723	.	C	.	.	LowGQX	END=6688724	GT	./.
chr1	6688725	.	G	.	.	LowGQX	END=6688731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688732	.	C	.	.	LowGQX	.	GT	./.
chr1	6688733	.	C	.	.	LowGQX	END=6688751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6688752	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	6688753	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6690331	.	G	.	.	LowGQX	END=6690339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6690340	.	T	.	.	LowGQX	END=6690430	GT	./.
chr1	6692428	.	A	.	.	LowGQX	END=6692557	GT	./.
chr1	6692855	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6692856	.	G	.	.	LowGQX	.	GT	./.
chr1	6692857	.	T	.	.	LowGQX	END=6692863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6692864	.	A	.	.	LowGQX	.	GT	./.
chr1	6692865	.	C	.	.	LowGQX	END=6692867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6692868	.	A	.	.	LowGQX	.	GT	./.
chr1	6692869	.	G	.	.	LowGQX	END=6692901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6692902	.	C	.	.	LowGQX	.	GT	./.
chr1	6692903	.	T	.	.	LowGQX	END=6692914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6692915	.	C	.	.	LowGQX	.	GT	./.
chr1	6692916	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6692917	.	T	.	.	LowGQX	.	GT	./.
chr1	6692918	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6692919	.	A	.	.	LowGQX	.	GT	./.
chr1	6692920	.	G	.	.	LowGQX	END=6692921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6692922	.	A	.	.	LowGQX	.	GT	./.
chr1	6692923	.	G	.	.	LowGQX	END=6692931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6692932	.	A	.	.	LowGQX	.	GT	./.
chr1	6692933	.	C	.	.	LowGQX	END=6692934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6692935	.	A	.	.	LowGQX	.	GT	./.
chr1	6692936	.	G	.	.	LowGQX	END=6692941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6692942	.	A	.	.	LowGQX	END=6693053	GT	./.
chr1	6693054	.	A	.	.	LowGQX	END=6693055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6693056	.	G	.	.	LowGQX	.	GT	./.
chr1	6693057	.	C	.	.	LowGQX	END=6693063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6693064	.	T	.	.	LowGQX	.	GT	./.
chr1	6693065	.	G	.	.	LowGQX	END=6693069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6693070	.	G	.	.	LowGQX	.	GT	./.
chr1	6693071	.	C	.	.	LowGQX	END=6693079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6693080	.	T	.	.	LowGQX	.	GT	./.
chr1	6693081	.	G	.	.	LowGQX	END=6693082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6693083	.	T	.	.	LowGQX	.	GT	./.
chr1	6693084	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6693085	.	G	.	.	LowGQX	.	GT	./.
chr1	6693086	.	C	.	.	LowGQX	END=6693090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6693091	.	G	.	.	LowGQX	.	GT	./.
chr1	6693092	.	G	.	.	LowGQX	END=6693102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6693103	.	T	.	.	LowGQX	.	GT	./.
chr1	6693104	.	C	.	.	LowGQX	END=6693107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6693108	.	G	.	.	LowGQX	.	GT	./.
chr1	6693109	.	C	.	.	LowGQX	END=6693116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6693117	.	G	.	.	LowGQX	.	GT	./.
chr1	6693118	.	G	.	.	LowGQX	END=6693119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6693120	.	C	.	.	LowGQX	.	GT	./.
chr1	6693121	.	C	.	.	LowGQX	END=6693137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6694065	.	C	.	.	LowGQX	END=6694164	GT	./.
chr1	6694585	.	C	.	.	LowGQX	END=6694753	GT	./.
chr1	6694754	.	G	.	.	LowGQX	END=6694844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6695698	.	T	.	.	LowGQX	END=6695700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6695701	.	T	.	.	LowGQX	END=6695702	GT	./.
chr1	6695703	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6695704	.	G	.	.	LowGQX	.	GT	./.
chr1	6695705	.	C	.	.	LowGQX	END=6695706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6695707	.	G	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	6695708	.	C	.	.	LowGQX	END=6695709	GT	./.
chr1	6695710	.	T	.	.	LowGQX	END=6695715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6695716	.	A	.	.	LowGQX	END=6695717	GT	./.
chr1	6695718	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6695719	.	T	.	.	LowGQX	.	GT	./.
chr1	6695720	.	C	.	.	LowGQX	END=6695721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6695722	.	G	.	.	LowGQX	.	GT	./.
chr1	6695723	.	G	.	.	LowGQX	END=6695725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6695726	.	C	.	.	LowGQX	END=6695727	GT	./.
chr1	6695728	.	T	.	.	LowGQX	END=6695730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6695731	.	C	.	.	LowGQX	END=6695733	GT	./.
chr1	6695734	.	T	.	.	LowGQX	END=6695736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6695737	.	A	.	.	LowGQX	.	GT	./.
chr1	6695738	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6695739	.	C	.	.	LowGQX	.	GT	./.
chr1	6695740	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6695741	.	A	.	.	LowGQX	END=6695743	GT	./.
chr1	6695744	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6695745	.	G	.	.	LowGQX	.	GT	./.
chr1	6695746	.	T	.	.	LowGQX	END=6695753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6695754	.	C	.	.	LowGQX	.	GT	./.
chr1	6695755	.	T	.	.	LowGQX	END=6695756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6695757	.	T	.	.	LowGQX	.	GT	./.
chr1	6695758	.	G	.	.	LowGQX	END=6695764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6695765	.	A	.	.	LowGQX	END=6695767	GT	./.
chr1	6695768	.	G	.	.	LowGQX	END=6695772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6695773	.	A	.	.	LowGQX	END=6695797	GT	./.
chr1	6696175	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6696176	.	C	.	.	LowGQX	END=6696209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6696210	.	G	.	.	LowGQX	.	GT	./.
chr1	6696211	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6696212	.	A	.	.	LowGQX	END=6696213	GT	./.
chr1	6696214	.	C	.	.	LowGQX	END=6696217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6696218	.	A	.	.	LowGQX	.	GT	./.
chr1	6696219	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6696220	.	C	.	.	LowGQX	.	GT	./.
chr1	6696221	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6696222	.	G	.	.	LowGQX	.	GT	./.
chr1	6696223	.	A	.	.	LowGQX	END=6696224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6696225	.	G	.	.	LowGQX	.	GT	./.
chr1	6696226	.	C	.	.	LowGQX	END=6696227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6696228	.	G	.	.	LowGQX	END=6696308	GT	./.
chr1	6697256	.	A	.	.	LowGQX	END=6697402	GT	./.
chr1	6697486	.	A	.	.	LowGQX	END=6697585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6698340	.	T	.	.	LowGQX	END=6698439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6699960	.	A	.	.	LowGQX	END=6700119	GT	./.
chr1	6704616	.	A	.	.	LowGQX	END=6704631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6704632	.	A	.	.	LowGQX	.	GT	./.
chr1	6704633	.	A	.	.	LowGQX	END=6704634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6704635	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	6704636	.	C	.	.	LowGQX	END=6704642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6704643	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	6704644	.	A	.	.	LowGQX	END=6704645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	6704646	.	C	.	.	LowGQX	.	GT	./.
chr1	6704647	.	T	.	.	LowGQX	END=6704654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6704655	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6704656	.	G	.	.	LowGQX	END=6704670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6704671	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	6704672	.	A	.	.	LowGQX	END=6704717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6704718	.	T	.	.	LowGQX	.	GT	./.
chr1	6704719	.	C	.	.	LowGQX	END=6704723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6704724	.	A	.	.	LowGQX	.	GT	./.
chr1	6704725	.	G	.	.	LowGQX	END=6704726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6704727	.	A	.	.	LowGQX	.	GT	./.
chr1	6704728	.	G	.	.	LowGQX	END=6704731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6704732	.	G	.	.	LowGQX	.	GT	./.
chr1	6704733	.	C	.	.	LowGQX	END=6704736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6705094	.	G	.	.	LowGQX	END=6705170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6705171	.	A	.	.	LowGQX	END=6705193	GT	./.
chr1	6705847	.	A	.	.	LowGQX	END=6705933	GT	./.
chr1	6705934	.	A	.	.	LowGQX	END=6706040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6711077	.	C	.	.	LowGQX	END=6711240	GT	./.
chr1	6711576	.	C	.	.	LowGQX	END=6711620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6711621	.	A	.	.	LowGQX	.	GT	./.
chr1	6711622	.	C	.	.	LowGQX	END=6711624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6711625	.	A	.	.	LowGQX	END=6711626	GT	./.
chr1	6711627	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6711628	.	A	.	.	LowGQX	.	GT	./.
chr1	6711629	.	A	.	.	LowGQX	END=6711634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6711635	.	C	.	.	LowGQX	END=6711636	GT	./.
chr1	6711637	.	T	.	.	LowGQX	END=6711638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6711639	.	T	.	.	LowGQX	.	GT	./.
chr1	6711640	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6711641	.	G	.	.	LowGQX	.	GT	./.
chr1	6711642	.	G	.	.	LowGQX	END=6711651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6711652	.	C	.	.	LowGQX	.	GT	./.
chr1	6711653	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6711654	.	A	.	.	LowGQX	.	GT	./.
chr1	6711655	.	A	.	.	LowGQX	END=6711664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6711665	.	G	.	.	LowGQX	END=6711666	GT	./.
chr1	6711667	.	T	.	.	LowGQX	END=6711675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6712887	.	A	.	.	LowGQX	END=6713013	GT	./.
chr1	6713969	.	A	.	.	LowGQX	END=6714101	GT	./.
chr1	6727767	.	A	.	.	LowGQX	END=6727872	GT	./.
chr1	6738381	.	G	.	.	LowGQX	END=6738540	GT	./.
chr1	6740966	.	A	.	.	LowGQX	END=6740969	GT	./.
chr1	6740970	.	T	.	.	LowGQX	END=6740974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6740975	.	A	.	.	LowGQX	.	GT	./.
chr1	6740976	.	G	.	.	LowGQX	END=6740995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6740996	.	C	.	.	LowGQX	.	GT	./.
chr1	6740997	.	A	.	.	LowGQX	END=6741012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6741013	.	A	.	.	LowGQX	END=6741014	GT	./.
chr1	6741015	.	T	.	.	LowGQX	END=6741039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6741040	.	C	.	.	LowGQX	.	GT	./.
chr1	6741041	.	T	.	.	LowGQX	END=6741062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6741063	.	C	.	.	LowGQX	.	GT	./.
chr1	6741064	.	T	.	.	LowGQX	END=6741065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6741066	.	C	.	.	LowGQX	.	GT	./.
chr1	6741067	.	G	.	.	LowGQX	END=6741073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6741074	.	A	.	.	LowGQX	.	GT	./.
chr1	6741075	.	G	.	.	LowGQX	END=6741099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6761717	.	C	.	.	LowGQX	END=6761775	GT	./.
chr1	6761776	.	C	.	.	LowGQX	END=6761784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6761785	.	T	.	.	LowGQX	.	GT	./.
chr1	6761786	.	C	.	.	LowGQX	END=6761794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6761795	.	G	.	.	LowGQX	.	GT	./.
chr1	6761796	.	C	.	.	LowGQX	END=6761801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6761802	.	T	.	.	LowGQX	.	GT	./.
chr1	6761803	.	T	.	.	LowGQX	END=6761811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6761812	.	A	.	.	LowGQX	.	GT	./.
chr1	6761813	.	G	.	.	LowGQX	END=6761822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6761823	.	T	.	.	LowGQX	.	GT	./.
chr1	6761824	.	C	.	.	LowGQX	END=6761843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6761844	.	C	.	.	LowGQX	.	GT	./.
chr1	6761845	.	T	.	.	LowGQX	END=6761874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6845504	.	G	.	.	LowGQX	.	GT	./.
chr1	6845505	.	G	.	.	LowGQX	END=6845563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6845564	.	G	A	9.30	LowGQX	BaseQRankSum=0.000;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-1.026;QD=2.32;ReadPosRankSum=1.026;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:38.75:39,0,39:60:9:0.500
chr1	6845565	.	G	.	.	LowGQX	END=6845650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	6845651	.	C	.	.	LowGQX	END=6845663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	6867042	.	G	.	.	LowGQX	END=6867127	GT	./.
chr1	6867128	.	C	.	.	LowGQX	END=6867148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	6880226	.	T	.	.	PASS	END=6880252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	6880253	.	A	.	.	PASS	END=6880303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	6880304	.	A	.	.	PASS	END=6880325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	6885150	.	A	.	.	PASS	END=6885166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	6885167	.	G	.	.	PASS	END=6885262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	6885263	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:68:58:60
chr1	6885264	.	T	.	.	PASS	END=6885272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	6931771	.	T	.	.	PASS	END=6931855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	6931856	.	A	.	.	PASS	END=6931870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	6946258	.	T	.	.	LowGQX	END=6946357	GT	./.
chr1	6947700	.	C	.	.	PASS	END=6947745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	6947746	.	A	.	.	PASS	END=6947774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	6947775	.	A	.	.	PASS	END=6947799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	7151292	.	A	.	.	PASS	END=7151352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	7151353	.	T	.	.	PASS	END=7151440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	7151441	.	C	.	.	PASS	END=7151447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	7202141	.	C	.	.	LowGQX	END=7202143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7202144	.	T	.	.	LowGQX	.	GT	./.
chr1	7202145	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7202146	.	C	.	.	LowGQX	END=7202150	GT	./.
chr1	7202151	.	T	.	.	LowGQX	END=7202153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7202154	.	C	.	.	LowGQX	.	GT	./.
chr1	7202155	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7202156	.	C	.	.	LowGQX	END=7202240	GT	./.
chr1	7309549	.	A	.	.	PASS	END=7309555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	7309556	.	A	.	.	PASS	END=7309566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:60
chr1	7309567	.	A	.	.	PASS	END=7309576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	7309577	.	A	.	.	PASS	END=7309610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	7309611	.	G	.	.	PASS	END=7309644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	7309645	.	A	.	.	PASS	END=7309688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	7527816	.	C	.	.	PASS	END=7527867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	7527868	.	C	.	.	PASS	END=7527888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	7527889	.	G	.	.	PASS	END=7527975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	7700458	.	A	.	.	PASS	END=7700478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	7700479	.	T	.	.	PASS	END=7700492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:78:60
chr1	7700493	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:70:60
chr1	7700494	.	T	.	.	PASS	END=7700587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	7700588	.	G	.	.	PASS	END=7700608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	7700609	.	C	.	.	PASS	END=7700615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	7721784	.	A	.	.	PASS	END=7721811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	7721812	.	A	.	.	PASS	END=7721928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	7723411	.	A	.	.	PASS	END=7723447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	7723448	.	G	.	.	PASS	END=7723602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	7723603	.	G	.	.	PASS	END=7723776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	7723777	.	G	.	.	PASS	END=7723953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	7723954	.	C	.	.	PASS	END=7723956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	7723957	.	G	A	2547.82	PASS	BaseQRankSum=3.411;DP=214;Dels=0.00;FS=0.525;HRun=0;HaplotypeScore=39.0846;MQ=60;MQ0=0;MQRankSum=0.103;QD=11.91;ReadPosRankSum=0.238;SB=-1321.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:116,98:214:99:2578,0,2712:60:99:0.458
chr1	7723958	.	G	.	.	PASS	END=7724039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	7724040	.	A	.	.	PASS	END=7724263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	7724264	.	G	.	.	PASS	END=7724403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	7724404	.	C	.	.	PASS	END=7724432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	7724433	.	A	.	.	PASS	END=7724490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	7724491	.	G	.	.	PASS	END=7724536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	7724537	.	A	.	.	PASS	END=7724618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	7724619	.	C	.	.	PASS	END=7724722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	7724723	.	A	.	.	PASS	END=7724827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	7724828	.	G	.	.	PASS	END=7724888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	7724889	.	G	.	.	PASS	END=7724976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	7724977	.	C	.	.	PASS	END=7725037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	7725038	.	C	.	.	PASS	END=7725104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	7725105	.	T	.	.	PASS	END=7725224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	7725225	.	T	.	.	PASS	END=7725255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	7725256	.	A	.	.	PASS	END=7725261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	7730969	.	A	.	.	PASS	END=7730984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	7730985	.	C	.	.	PASS	END=7731084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	7731085	.	T	.	.	PASS	END=7731099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	7732035	.	G	.	.	LowGQX	END=7732036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732037	.	C	.	.	LowGQX	.	GT	./.
chr1	7732038	.	T	.	.	LowGQX	END=7732039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732040	.	T	.	.	LowGQX	END=7732041	GT	./.
chr1	7732042	.	T	.	.	LowGQX	END=7732048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732049	.	C	.	.	LowGQX	.	GT	./.
chr1	7732050	.	T	.	.	LowGQX	END=7732060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732061	.	G	.	.	LowGQX	.	GT	./.
chr1	7732062	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732063	.	T	.	.	LowGQX	.	GT	./.
chr1	7732064	.	C	.	.	LowGQX	END=7732065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732066	.	T	.	.	LowGQX	.	GT	./.
chr1	7732067	.	G	.	.	LowGQX	END=7732080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732081	.	A	.	.	LowGQX	END=7732082	GT	./.
chr1	7732083	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732084	.	A	.	.	LowGQX	.	GT	./.
chr1	7732085	.	C	.	.	LowGQX	END=7732086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732087	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	7732088	.	C	.	.	LowGQX	END=7732094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732095	.	T	.	.	LowGQX	.	GT	./.
chr1	7732096	.	G	.	.	LowGQX	END=7732103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732104	.	T	.	.	LowGQX	.	GT	./.
chr1	7732105	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732106	.	A	.	.	LowGQX	.	GT	./.
chr1	7732107	.	T	.	.	LowGQX	END=7732110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732111	.	C	.	.	LowGQX	END=7732112	GT	./.
chr1	7732113	.	C	.	.	LowGQX	END=7732114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732115	.	A	.	.	LowGQX	END=7732116	GT	./.
chr1	7732117	.	C	.	.	LowGQX	END=7732119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732120	.	T	.	.	LowGQX	.	GT	./.
chr1	7732121	.	C	.	.	LowGQX	END=7732126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732127	.	G	.	.	LowGQX	.	GT	./.
chr1	7732128	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732129	.	C	.	.	LowGQX	.	GT	./.
chr1	7732130	.	C	.	.	LowGQX	END=7732137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732138	.	T	.	.	LowGQX	.	GT	./.
chr1	7732139	.	G	.	.	LowGQX	END=7732150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732151	.	T	.	.	LowGQX	.	GT	./.
chr1	7732152	.	A	.	.	LowGQX	END=7732155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732156	.	A	.	.	LowGQX	END=7732157	GT	./.
chr1	7732158	.	G	.	.	LowGQX	END=7732165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732166	.	T	.	.	LowGQX	.	GT	./.
chr1	7732167	.	A	.	.	LowGQX	END=7732179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7732180	.	T	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	7732181	.	G	.	.	LowGQX	END=7732194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7737657	.	A	.	.	PASS	END=7737704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	7737705	.	G	.	.	PASS	END=7737753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	7737754	.	A	.	.	PASS	END=7737787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	7737788	.	T	.	.	PASS	END=7737795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	7740145	.	G	.	.	LowGQX	END=7740304	GT	./.
chr1	7792485	.	C	.	.	PASS	END=7792500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	7792501	.	G	.	.	PASS	END=7792523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	7792524	.	G	.	.	PASS	END=7792641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	7792642	.	G	.	.	PASS	END=7792661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	7796402	.	A	.	.	PASS	END=7796410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	7796411	.	C	.	.	PASS	END=7796424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	7796425	.	T	.	.	PASS	END=7796459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	7796460	.	A	.	.	PASS	END=7796565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	7796566	.	T	.	.	PASS	END=7796581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	7796582	.	A	.	.	PASS	END=7796602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	7796981	.	T	.	.	PASS	END=7797002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	7797003	.	G	.	.	PASS	END=7797080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	7797313	.	A	.	.	PASS	END=7797333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	7797334	.	G	.	.	PASS	END=7797390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	7797391	.	C	.	.	PASS	END=7797509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:271:99:60
chr1	7797510	.	A	.	.	PASS	END=7797553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	7797554	.	G	.	.	PASS	END=7797615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	7797616	.	C	.	.	PASS	END=7797632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	7798017	.	A	.	.	PASS	END=7798049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	7798050	.	T	.	.	PASS	END=7798070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	7798071	.	C	.	.	PASS	END=7798125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	7798126	.	A	.	.	PASS	END=7798156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	7798157	.	G	.	.	PASS	END=7798209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	7798210	.	C	.	.	PASS	END=7798249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	7798250	.	G	.	.	PASS	END=7798332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	7798333	.	G	.	.	PASS	END=7798475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:264:99:60
chr1	7798476	.	A	.	.	PASS	END=7798493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	7798494	.	T	.	.	PASS	END=7798502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	7798503	.	A	.	.	PASS	END=7798538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	7798539	.	A	.	.	PASS	END=7798544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	7804893	.	A	.	.	PASS	END=7804919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	7804920	.	A	.	.	PASS	END=7805021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	7805022	.	T	.	.	PASS	END=7805067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	7805068	.	T	.	.	PASS	END=7805074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	7805075	.	C	.	.	PASS	END=7805084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	7805903	.	A	.	.	PASS	END=7805929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	7805930	.	C	.	.	PASS	END=7805981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr1	7805982	.	C	.	.	PASS	END=7806095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:257:99:60
chr1	7806096	.	A	.	.	PASS	END=7806123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	7806124	.	T	.	.	PASS	END=7806153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	7807756	.	A	.	.	PASS	END=7807779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	7807780	.	T	.	.	PASS	END=7807847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	7807848	.	C	.	.	PASS	END=7807855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	7809792	.	A	.	.	LowGQX	END=7809891	GT	./.
chr1	7810992	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:60
chr1	7810993	.	A	.	.	LowGQX	END=7810994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	7810995	.	T	.	.	LowGQX	END=7810999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	7811000	.	T	.	.	LowGQX	END=7811013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	7811014	.	G	A	85.91	LowGQ;LowGQX;SB	DP=3;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=28.64;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:9.03:118,9,0:60:9:1.000
chr1	7811015	.	A	.	.	LowGQX	END=7811040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	7811041	.	A	.	.	LowGQX	END=7811045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	7811046	.	T	.	.	LowGQX	END=7811055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	7811056	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	7811057	.	C	.	.	LowGQX	END=7811091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	7811257	.	A	.	.	PASS	END=7811291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	7811292	.	A	.	.	PASS	END=7811332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	7811333	.	A	.	.	PASS	END=7811406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	7811407	.	G	.	.	PASS	END=7811443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	7811444	.	G	.	.	PASS	END=7811454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	7812446	.	T	.	.	PASS	END=7812475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	7812476	.	T	.	.	PASS	END=7812595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	7812596	.	A	.	.	PASS	END=7812606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	7815664	.	T	.	.	PASS	END=7815681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	7815682	.	G	.	.	PASS	END=7815708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	7815709	.	A	.	.	PASS	END=7815763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	7826500	.	T	.	.	PASS	END=7826526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	7826527	.	A	.	.	PASS	END=7826577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	7826578	.	T	.	.	PASS	END=7826599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	7831335	.	G	.	.	LowGQX	END=7831494	GT	./.
chr1	7833487	.	C	.	.	LowGQX	END=7833586	GT	./.
chr1	7837218	.	A	.	.	LowGQX	END=7837380	GT	./.
chr1	7838154	.	A	.	.	LowGQX	END=7838187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7838188	.	T	.	.	LowGQX	.	GT	./.
chr1	7838189	.	C	.	.	LowGQX	END=7838240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7838241	.	T	.	.	LowGQX	END=7838253	GT	./.
chr1	7839646	.	G	.	.	LowGQX	END=7839745	GT	./.
chr1	7844905	.	C	.	.	PASS	END=7844923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	7844924	.	G	.	.	PASS	END=7844982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	7844983	.	G	.	.	PASS	END=7845056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	7845057	.	C	.	.	PASS	END=7845112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	7845113	.	C	.	.	PASS	END=7845115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	7845499	.	A	.	.	PASS	END=7845607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	7845608	.	C	.	.	PASS	END=7845622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	7845623	.	T	.	.	PASS	END=7845638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	7845639	.	C	.	.	PASS	END=7845648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	7846779	.	A	.	.	PASS	END=7846820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	7846821	.	A	.	.	PASS	END=7846840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	7846841	.	T	.	.	PASS	END=7846879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	7846880	.	A	.	.	PASS	END=7846898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:96:60
chr1	7847476	.	C	.	.	LowGQX	END=7847533	GT	./.
chr1	7847534	.	A	.	.	LowGQX	END=7847575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7848103	.	A	.	.	PASS	END=7848116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	7848117	.	G	.	.	PASS	END=7848293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	7848294	.	T	.	.	PASS	END=7848308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	7853994	.	T	.	.	PASS	END=7854020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr1	7854021	.	T	.	.	PASS	END=7854026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	7854027	.	G	.	.	PASS	END=7854093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	7858583	.	A	.	.	PASS	END=7858600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	7858601	.	A	.	.	PASS	END=7858634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	7858635	.	T	.	.	PASS	END=7858703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	7858704	.	T	.	.	PASS	END=7858735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	7861101	.	T	.	.	PASS	END=7861125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	7861126	.	T	.	.	PASS	END=7861153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	7861153	.	C	CT	1732.00	PASS	DP=45;FS=0.000;HRun=3;HaplotypeScore=78.5845;MQ=60;MQ0=0;QD=38.49;SB=-709.61	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,45:45:99:1774,135,0:60:99:1.000
chr1	7861154	.	T	.	.	PASS	END=7861205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	7861206	.	C	.	.	PASS	END=7861226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	7861227	.	G	.	.	PASS	END=7861262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	7863105	.	A	.	.	PASS	END=7863155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	7863156	.	A	.	.	PASS	END=7863215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	7863750	.	A	.	.	PASS	END=7863766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	7863767	.	G	.	.	PASS	END=7863911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	7863912	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:179:99:60
chr1	7868891	.	T	.	.	PASS	END=7868924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	7868925	.	A	.	.	PASS	END=7868944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:83:60
chr1	7868945	.	T	.	.	PASS	END=7868985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	7868986	.	A	.	.	PASS	END=7869055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	7869056	.	C	.	.	PASS	END=7869060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	7869951	.	A	.	.	PASS	END=7869977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	7869978	.	G	.	.	PASS	END=7870043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	7870044	.	C	.	.	PASS	END=7870047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	7870048	.	T	C	2528.23	PASS	DP=84;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;QD=30.10;SB=-928.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,84:84:99:2561,196,0:60:99:1.000
chr1	7870049	.	G	.	.	PASS	END=7870064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	7870065	.	A	.	.	PASS	END=7870083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	7870496	.	A	.	.	PASS	END=7870540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	7870541	.	A	.	.	PASS	END=7870615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	7870616	.	C	.	.	PASS	END=7870648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	7879343	.	A	.	.	PASS	END=7879482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr1	7880173	.	A	.	.	PASS	END=7880210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	7880211	.	A	.	.	PASS	END=7880301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	7880525	.	A	.	.	PASS	END=7880558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	7880559	.	G	.	.	PASS	END=7880662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	7880663	.	C	.	.	PASS	END=7880682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	7880683	.	T	G	3848.18	PASS	BaseQRankSum=2.238;DP=129;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=10.4689;MQ=60;MQ0=0;MQRankSum=-0.259;QD=29.83;ReadPosRankSum=-1.143;SB=-1687.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,126:129:99:3848,298,0:60:99:0.984
chr1	7880684	.	C	.	.	PASS	END=7880696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	7880697	.	A	.	.	PASS	END=7880702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	7886538	.	A	.	.	PASS	END=7886550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	7886551	.	A	.	.	PASS	END=7886564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	7886565	.	G	.	.	PASS	END=7886671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	7886672	.	A	.	.	PASS	END=7886772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	7887176	.	A	.	.	PASS	END=7887341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	7887342	.	T	.	.	PASS	END=7887492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	7887493	.	T	C	6502.45	PASS	DP=205;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=16.3931;MQ=60;MQ0=0;QD=31.72;SB=-2544.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,205:205:99:6502,503,0:60:99:1.000
chr1	7887494	.	G	.	.	PASS	END=7887538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	7887539	.	T	.	.	PASS	END=7887665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:60
chr1	7887666	.	T	.	.	PASS	END=7887700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	7887701	.	A	.	.	PASS	END=7887840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	7887841	.	A	.	.	PASS	END=7887877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	7889893	.	G	.	.	PASS	END=7889906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	7889907	.	G	.	.	PASS	END=7889923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	7889924	.	A	.	.	PASS	END=7889949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:59
chr1	7889950	.	G	.	.	PASS	END=7889983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:58
chr1	7889984	.	C	.	.	PASS	END=7889997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:57
chr1	7889998	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:93:6:57
chr1	7889999	.	G	.	.	PASS	END=7890009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:57
chr1	7890010	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:87:72:57
chr1	7890011	.	G	.	.	PASS	END=7890024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:90:56
chr1	7890025	.	G	.	120.27	PASS	DP=70;MQ=57;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:56:70:90.28:57:90
chr1	7890026	.	A	.	.	PASS	END=7890050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:92:54
chr1	7890051	.	G	.	.	PASS	END=7890052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:54
chr1	7890053	.	G	A	445.91	PASS	BaseQRankSum=2.101;DP=55;Dels=0.00;FS=15.850;HRun=0;HaplotypeScore=17.0445;MQ=54;MQ0=0;MQRankSum=-0.248;QD=8.11;ReadPosRankSum=-2.064;SB=-60.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,20:55:99:476,0,732:54:99:0.377
chr1	7890054	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:99:54
chr1	7890055	.	T	A	481.07	PASS	BaseQRankSum=2.342;DP=54;Dels=0.00;FS=21.504;HRun=0;HaplotypeScore=21.7791;MQ=54;MQ0=0;MQRankSum=-0.442;QD=8.91;ReadPosRankSum=-3.019;SB=-56.17	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:32,20:54:99:511,0,619:54:99:0.385
chr1	7890056	.	C	.	.	PASS	END=7890063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:54
chr1	7890064	.	A	G	296.42	SB	BaseQRankSum=-0.218;DP=68;Dels=0.00;FS=69.370;HRun=2;HaplotypeScore=25.6518;MQ=55;MQ0=0;MQRankSum=-1.138;QD=4.36;ReadPosRankSum=-3.849;SB=1.75	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:48,15:68:99:326,0,898:55:99:0.238
chr1	7890065	.	G	.	.	PASS	END=7890095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:55
chr1	7890096	.	C	.	.	PASS	END=7890106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:57
chr1	7890107	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:86:65:58
chr1	7890108	.	C	.	.	PASS	END=7890116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:58
chr1	7890117	.	T	C	2454.29	PASS	BaseQRankSum=-0.459;DP=94;Dels=0.00;FS=3.031;HRun=0;HaplotypeScore=43.7058;MQ=58;MQ0=0;MQRankSum=0.563;QD=26.11;ReadPosRankSum=1.297;SB=-1299.48	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,92:94:99:2487,132,0:58:99:0.979
chr1	7890118	.	G	.	.	PASS	END=7890140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:58
chr1	7890141	.	C	.	.	PASS	END=7890166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:59
chr1	7890167	.	T	.	.	PASS	END=7890203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	7890204	.	C	.	.	PASS	END=7890223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	7895820	.	A	.	.	PASS	END=7895836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	7895837	.	G	.	.	PASS	END=7895851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	7895852	.	G	.	.	PASS	END=7895974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr1	7895975	.	G	.	.	PASS	END=7895986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	7895987	.	C	.	.	PASS	END=7896001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	7896002	.	A	.	.	PASS	END=7896007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	7897057	.	A	.	.	PASS	END=7897074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	7897075	.	C	.	.	PASS	END=7897096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	7897097	.	T	.	.	PASS	END=7897132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	7897133	.	A	G	3196.92	PASS	BaseQRankSum=-0.353;DP=123;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=9.6699;MQ=60;MQ0=0;MQRankSum=-0.696;QD=25.99;ReadPosRankSum=0.413;SB=-1616.99	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,120:123:99:3230,205,0:60:99:0.984
chr1	7897134	.	T	.	.	PASS	END=7897172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	7897173	.	T	.	.	PASS	END=7897211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	7902724	.	T	.	.	PASS	END=7902799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	7902800	.	A	.	.	PASS	END=7902819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	7902820	.	C	.	.	PASS	END=7902823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	7903957	.	A	.	.	LowGQX	END=7903961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7903962	.	A	.	.	LowGQX	.	GT	./.
chr1	7903963	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7903964	.	T	.	.	LowGQX	END=7904056	GT	./.
chr1	7906410	.	A	.	.	LowGQX	END=7906509	GT	./.
chr1	7906739	.	A	.	.	LowGQX	END=7906838	GT	./.
chr1	7907824	.	C	.	.	PASS	END=7907854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:82:60
chr1	7907855	.	G	.	.	PASS	END=7907944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	7909618	.	C	.	.	PASS	END=7909644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	7909645	.	A	.	.	PASS	END=7909665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	7909666	.	T	.	.	PASS	END=7909688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	7909689	.	G	.	.	PASS	END=7909771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	7910870	.	A	.	.	PASS	END=7910922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	7910923	.	T	.	.	PASS	END=7910984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	7912959	.	A	.	.	PASS	END=7913049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	7913050	.	G	.	.	PASS	END=7913065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	7913315	.	G	.	.	PASS	END=7913328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	7913329	.	A	.	.	PASS	END=7913358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	7913359	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:64:75:60
chr1	7913360	.	A	.	.	PASS	END=7913389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	7913390	.	A	.	.	PASS	END=7913470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	7913471	.	A	.	.	PASS	END=7913493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	7980890	.	C	.	.	LowGQX	END=7980989	GT	./.
chr1	7993220	.	A	.	.	LowGQX	END=7993358	GT	./.
chr1	7995071	.	A	.	.	LowGQX	END=7995205	GT	./.
chr1	7997734	.	A	.	.	LowGQX	END=7997833	GT	./.
chr1	7998251	.	A	.	.	LowGQX	END=7998387	GT	./.
chr1	7998388	.	C	.	.	LowGQX	END=7998392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	7998779	.	A	.	.	LowGQX	END=7998890	GT	./.
chr1	7999953	.	A	.	.	LowGQX	END=8000056	GT	./.
chr1	8022795	.	G	.	.	PASS	END=8022800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	8022800	.	CT	C	35.98	LowQD	BaseQRankSum=1.187;DP=64;FS=3.432;HRun=19;HaplotypeScore=379.7563;MQ=60;MQ0=0;MQRankSum=-0.430;QD=0.56;ReadPosRankSum=0.822;SB=-32.47	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:46,9:64:75.01:75,0,383:60:36:0.164
chr1	8022801	.	T	.	.	LowQD	.	GT:DP:GQX:MQ	0:74:99:60
chr1	8022802	.	T	.	.	PASS	END=8022820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	8022821	.	A	.	.	PASS	END=8022823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:84:60
chr1	8022824	.	C	.	108.21	PASS	DP=67;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:44:67:78.22:60:78
chr1	8022825	.	T	.	.	PASS	END=8022831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	8022832	.	C	A	8.81	LowGQX;LowQD;SB	BaseQRankSum=-2.404;DP=75;Dels=0.00;FS=7.637;HRun=3;HaplotypeScore=65.3651;MQ=60;MQ0=0;MQRankSum=-0.828;QD=0.12;ReadPosRankSum=1.795;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:60,15:75:38.19:38,0,1151:60:9:0.200
chr1	8022833	.	A	.	.	PASS	END=8022838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	8022839	.	C	.	65.89	PASS	DP=74;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:58:74:35.90:60:36
chr1	8022840	.	A	.	.	PASS	END=8022906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	8022907	.	T	.	.	PASS	END=8022951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	8022952	.	T	.	.	PASS	END=8022986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	8025333	.	C	.	.	PASS	END=8025342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	8025343	.	A	.	.	PASS	END=8025346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	8025347	.	T	.	.	PASS	END=8025348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	8025349	.	C	.	.	PASS	END=8025351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	8025352	.	T	.	.	PASS	END=8025354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	8025355	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:25:60
chr1	8025356	.	C	.	.	PASS	END=8025357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr1	8025358	.	T	.	.	PASS	END=8025362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	8025363	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chr1	8025364	.	T	.	.	PASS	END=8025368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	8025369	.	A	.	.	PASS	END=8025372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:60
chr1	8025373	.	C	.	.	PASS	END=8025374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:60
chr1	8025375	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:26:60
chr1	8025376	.	T	.	.	PASS	END=8025392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	8025393	.	A	.	.	PASS	END=8025394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:39:60
chr1	8025395	.	C	.	.	PASS	END=8025406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	8025407	.	G	.	.	PASS	END=8025412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr1	8025413	.	A	.	.	PASS	END=8025418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:65:60
chr1	8025419	.	C	.	.	PASS	END=8025427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	8025428	.	G	.	.	PASS	END=8025536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	8029354	.	C	.	.	PASS	END=8029358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	8029359	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:63:60
chr1	8029360	.	T	.	.	PASS	END=8029416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	8029417	.	G	.	.	PASS	END=8029477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:85:60
chr1	8029478	.	C	.	.	PASS	END=8029499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	8029500	.	T	.	.	PASS	END=8029505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	8030903	.	G	.	.	PASS	END=8031023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	8031024	.	G	.	.	PASS	END=8031041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	8031042	.	C	.	.	PASS	END=8031051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	8031052	.	G	.	.	PASS	END=8031054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:54:60
chr1	8031055	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:45:60
chr1	8031056	.	C	.	.	PASS	END=8031061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	8031062	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:45:60
chr1	8031063	.	G	.	.	PASS	END=8031065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	8031066	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:36:60
chr1	8031067	.	G	.	.	PASS	END=8031074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	8037661	.	A	.	.	PASS	END=8037719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:96:60
chr1	8037720	.	G	.	.	PASS	END=8037752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	8037753	.	A	.	.	PASS	END=8037785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	8037786	.	A	.	.	PASS	END=8037811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	8037812	.	T	.	.	PASS	END=8037839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	8044903	.	T	.	.	PASS	END=8044916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	8044917	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:27:60
chr1	8044918	.	C	.	.	PASS	END=8044932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	8044933	.	T	.	.	PASS	END=8044954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	8044955	.	T	.	.	PASS	END=8044965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	8044966	.	A	.	.	PASS	END=8045015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	8045016	.	C	.	.	PASS	END=8045035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	8045036	.	T	.	.	PASS	END=8045062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	8045063	.	T	.	.	PASS	END=8045116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	8045117	.	C	.	.	PASS	END=8045165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	8073268	.	G	.	.	LowGQX	END=8074458	GT	./.
chr1	8075357	.	A	.	.	LowGQX	END=8075456	GT	./.
chr1	8075553	.	A	.	.	LowGQX	END=8075681	GT	./.
chr1	8378097	.	G	.	.	LowGQX	END=8378257	GT	./.
chr1	8384365	.	G	.	.	LowGQX	END=8384788	GT	./.
chr1	8385355	.	C	.	.	LowGQX	END=8385454	GT	./.
chr1	8385876	.	A	.	.	LowGQX	END=8386046	GT	./.
chr1	8386047	.	C	.	.	LowGQX	END=8386080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8386081	.	A	.	.	LowGQX	.	GT	./.
chr1	8386082	.	A	.	.	LowGQX	END=8386104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8390267	.	A	.	.	LowGQX	END=8390514	GT	./.
chr1	8390515	.	G	.	.	LowGQX	END=8390642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8390643	.	T	A	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	8390644	.	T	.	.	LowGQX	END=8390679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8390680	.	T	.	.	LowGQX	.	GT	./.
chr1	8390681	.	C	.	.	LowGQX	END=8390701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8390702	.	C	.	.	LowGQX	END=8390998	GT	./.
chr1	8395495	.	A	.	.	LowGQX	END=8395652	GT	./.
chr1	8397874	.	A	.	.	LowGQX	END=8397885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8397886	.	A	.	.	LowGQX	.	GT	./.
chr1	8397887	.	T	.	.	LowGQX	END=8397897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8397898	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	8397899	.	T	.	.	LowGQX	END=8397908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8397909	.	A	.	.	LowGQX	END=8397910	GT	./.
chr1	8397911	.	A	.	.	LowGQX	END=8397914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8397915	.	A	.	.	LowGQX	END=8397979	GT	./.
chr1	8397980	.	A	.	.	LowGQX	END=8398054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8399551	.	A	.	.	LowGQX	END=8399760	GT	./.
chr1	8403805	.	A	.	.	LowGQX	END=8404075	GT	./.
chr1	8415114	.	G	.	.	LowGQX	END=8415168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415169	.	T	.	.	LowGQX	.	GT	./.
chr1	8415170	.	T	.	.	LowGQX	END=8415213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415466	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8415467	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	8415468	.	C	.	.	LowGQX	END=8415476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8415477	.	A	.	30.88	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:1.82:60:2
chr1	8415478	.	C	.	.	LowGQX	END=8415486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8415487	.	A	.	.	LowGQX	.	GT	./.
chr1	8415488	.	T	.	.	LowGQX	END=8415490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415491	.	T	.	.	LowGQX	.	GT	./.
chr1	8415492	.	C	.	.	LowGQX	END=8415494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415495	.	G	.	.	LowGQX	END=8415496	GT	./.
chr1	8415497	.	C	.	.	LowGQX	END=8415498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415499	.	T	.	.	LowGQX	.	GT	./.
chr1	8415500	.	G	.	.	LowGQX	END=8415502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415503	.	A	.	.	LowGQX	.	GT	./.
chr1	8415504	.	G	.	.	LowGQX	END=8415505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415506	.	T	.	.	LowGQX	.	GT	./.
chr1	8415507	.	G	.	.	LowGQX	END=8415511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415512	.	C	.	.	LowGQX	.	GT	./.
chr1	8415513	.	C	.	.	LowGQX	END=8415518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415519	.	T	.	.	LowGQX	.	GT	./.
chr1	8415520	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415521	.	T	.	.	LowGQX	.	GT	./.
chr1	8415522	.	G	.	.	LowGQX	END=8415526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415527	.	T	.	.	LowGQX	.	GT	./.
chr1	8415528	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415529	.	T	.	.	LowGQX	.	GT	./.
chr1	8415530	.	C	.	.	LowGQX	END=8415568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415569	.	T	.	.	LowGQX	.	GT	./.
chr1	8415570	.	C	.	.	LowGQX	END=8415592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415593	.	T	.	.	LowGQX	.	GT	./.
chr1	8415594	.	G	.	.	LowGQX	END=8415598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415599	.	T	.	.	LowGQX	END=8415623	GT	./.
chr1	8415624	.	G	.	.	LowGQX	END=8415625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415626	.	A	.	.	LowGQX	.	GT	./.
chr1	8415627	.	T	.	.	LowGQX	END=8415633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415634	.	A	.	.	LowGQX	.	GT	./.
chr1	8415635	.	G	.	.	LowGQX	END=8415637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415638	.	A	.	.	LowGQX	.	GT	./.
chr1	8415639	.	G	.	.	LowGQX	END=8415650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415651	.	A	.	.	LowGQX	.	GT	./.
chr1	8415652	.	G	.	.	LowGQX	END=8415657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8415658	.	G	.	.	LowGQX	END=8415659	GT	./.
chr1	8415660	.	C	.	.	LowGQX	END=8415661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8416127	.	G	.	.	LowGQX	END=8416170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8416171	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	8416172	.	G	.	.	LowGQX	END=8416227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8416228	.	C	.	.	LowGQX	.	GT	./.
chr1	8416229	.	C	.	.	LowGQX	END=8416234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8416235	.	G	.	.	LowGQX	.	GT	./.
chr1	8416236	.	G	.	.	LowGQX	END=8416245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8416246	.	C	.	.	LowGQX	END=8416337	GT	./.
chr1	8418254	.	A	.	.	LowGQX	END=8418333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8418334	.	T	.	.	LowGQX	END=8418513	GT	./.
chr1	8418514	.	G	.	.	LowGQX	END=8418534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8418535	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	8418536	.	G	.	.	LowGQX	END=8418548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8418549	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	8418550	.	G	.	.	LowGQX	END=8418559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8418560	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	8418561	.	T	.	.	LowGQX	END=8418576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8418577	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	8418578	.	T	.	.	LowGQX	END=8418584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8418585	.	A	.	.	LowGQX	.	GT	./.
chr1	8418586	.	G	.	.	LowGQX	END=8418596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8418597	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	8418598	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8418599	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	8418600	.	G	.	.	LowGQX	END=8418629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8418630	.	C	.	.	LowGQX	END=8418798	GT	./.
chr1	8418799	.	A	.	.	LowGQX	END=8418854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8418855	.	C	.	.	LowGQX	.	GT	./.
chr1	8418856	.	C	.	.	LowGQX	END=8418871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8418872	.	A	.	.	LowGQX	END=8418873	GT	./.
chr1	8418874	.	C	.	.	LowGQX	END=8418891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8418892	.	G	.	.	LowGQX	.	GT	./.
chr1	8418893	.	T	.	.	LowGQX	END=8418895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8418896	.	C	.	.	LowGQX	.	GT	./.
chr1	8418897	.	T	.	.	LowGQX	END=8418910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8418911	.	C	.	.	LowGQX	.	GT	./.
chr1	8418912	.	A	.	.	LowGQX	END=8418922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8418923	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	8418924	.	C	.	.	LowGQX	END=8418938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8418939	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	8418940	.	C	.	.	LowGQX	END=8418955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8418956	.	A	.	.	LowGQX	.	GT	./.
chr1	8418957	.	T	.	.	LowGQX	END=8418961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8418962	.	T	.	.	LowGQX	.	GT	./.
chr1	8418963	.	G	.	.	LowGQX	END=8418969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8418970	.	A	.	.	LowGQX	.	GT	./.
chr1	8418971	.	C	.	.	LowGQX	END=8418972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8418973	.	C	.	.	LowGQX	.	GT	./.
chr1	8418974	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8418975	.	T	.	.	LowGQX	.	GT	./.
chr1	8418976	.	T	.	.	LowGQX	END=8418978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8419822	.	A	.	.	LowGQX	END=8420048	GT	./.
chr1	8420170	.	A	.	.	LowGQX	END=8421358	GT	./.
chr1	8421359	.	G	.	.	LowGQX	END=8421479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8421480	.	T	.	.	LowGQX	END=8421559	GT	./.
chr1	8421821	.	A	.	.	LowGQX	END=8421938	GT	./.
chr1	8422711	.	G	.	.	LowGQX	END=8422906	GT	./.
chr1	8424114	.	A	.	.	LowGQX	END=8424317	GT	./.
chr1	8424803	.	T	.	.	LowGQX	END=8424902	GT	./.
chr1	8425870	.	A	.	.	LowGQX	END=8426036	GT	./.
chr1	8440783	.	T	.	.	LowGQX	END=8440895	GT	./.
chr1	8440896	.	G	.	.	LowGQX	END=8441076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8441077	.	G	.	.	LowGQX	END=8441080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	8441081	.	C	.	.	LowGQX	END=8441105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8441106	.	G	T	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	8441107	.	T	.	.	LowGQX	END=8441145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8482778	.	T	.	.	LowGQX	END=8482877	GT	./.
chr1	8525721	.	T	.	.	LowGQX	END=8525726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8525727	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	8525728	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	8525729	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	8525730	.	A	.	.	LowGQX	END=8525734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8525735	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	8525736	.	A	.	.	LowGQX	END=8525742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8525743	.	C	.	.	LowGQX	.	GT	./.
chr1	8525744	.	C	.	.	LowGQX	END=8525751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8525752	.	C	.	.	LowGQX	END=8525753	GT	./.
chr1	8525754	.	A	.	.	LowGQX	END=8525757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8525758	.	A	.	.	LowGQX	.	GT	./.
chr1	8525759	.	A	.	.	LowGQX	END=8525762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8525763	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	8525764	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	8525765	.	A	.	.	LowGQX	END=8525774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8525775	.	C	.	.	LowGQX	.	GT	./.
chr1	8525776	.	C	.	.	LowGQX	END=8525780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8525781	.	T	.	.	LowGQX	.	GT	./.
chr1	8525782	.	C	.	.	LowGQX	END=8525783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8525784	.	A	.	.	LowGQX	END=8525785	GT	./.
chr1	8525786	.	G	.	.	LowGQX	END=8525787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8525788	.	A	.	.	LowGQX	END=8525789	GT	./.
chr1	8525790	.	C	.	.	LowGQX	END=8525795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8525796	.	C	.	.	LowGQX	END=8525797	GT	./.
chr1	8525798	.	T	.	.	LowGQX	END=8525804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8525805	.	A	.	.	LowGQX	.	GT	./.
chr1	8525806	.	T	.	.	LowGQX	END=8525808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8525809	.	A	.	.	LowGQX	.	GT	./.
chr1	8525810	.	G	.	.	LowGQX	END=8525840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8525841	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	8525842	.	C	.	.	LowGQX	END=8525859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8525860	.	C	.	.	LowGQX	.	GT	./.
chr1	8525861	.	T	.	.	LowGQX	END=8525863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8525864	.	C	.	.	LowGQX	.	GT	./.
chr1	8525865	.	A	.	.	LowGQX	END=8525874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8525875	.	A	.	.	LowGQX	.	GT	./.
chr1	8525876	.	T	.	.	LowGQX	END=8525902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8525903	.	C	.	.	LowGQX	.	GT	./.
chr1	8525904	.	C	.	.	LowGQX	END=8525909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8525910	.	A	.	.	LowGQX	.	GT	./.
chr1	8525911	.	G	.	.	LowGQX	END=8525912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8525913	.	A	.	.	LowGQX	.	GT	./.
chr1	8525914	.	G	.	.	LowGQX	END=8525937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8525938	.	G	.	.	LowGQX	.	GT	./.
chr1	8525939	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8525940	.	G	.	.	LowGQX	END=8525990	GT	./.
chr1	8525991	.	G	.	.	LowGQX	END=8525998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8525999	.	T	.	.	LowGQX	.	GT	./.
chr1	8526000	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8526001	.	C	.	.	LowGQX	END=8526002	GT	./.
chr1	8526003	.	G	.	.	LowGQX	END=8526012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8526013	.	A	.	.	LowGQX	.	GT	./.
chr1	8526014	.	T	.	.	LowGQX	END=8526015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8526016	.	A	.	.	LowGQX	.	GT	./.
chr1	8526017	.	G	.	.	LowGQX	END=8526019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8526020	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	8526021	.	G	.	.	LowGQX	END=8526026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8526027	.	A	.	.	LowGQX	.	GT	./.
chr1	8526028	.	G	.	.	LowGQX	END=8526030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8526031	.	T	.	.	LowGQX	.	GT	./.
chr1	8526032	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8526033	.	C	.	.	LowGQX	.	GT	./.
chr1	8526034	.	T	.	.	LowGQX	END=8526036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8526037	.	A	.	.	LowGQX	.	GT	./.
chr1	8526038	.	C	.	.	LowGQX	END=8526058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8526059	.	C	.	.	LowGQX	END=8526060	GT	./.
chr1	8526061	.	G	.	.	LowGQX	END=8526062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8526063	.	A	.	.	LowGQX	.	GT	./.
chr1	8526064	.	T	.	.	LowGQX	END=8526067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8526068	.	A	.	.	LowGQX	.	GT	./.
chr1	8526069	.	A	.	.	LowGQX	END=8526077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8526078	.	A	.	.	LowGQX	.	GT	./.
chr1	8526079	.	T	.	.	LowGQX	END=8526081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8526082	.	A	.	.	LowGQX	.	GT	./.
chr1	8526083	.	G	.	.	LowGQX	END=8526085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8555121	.	A	.	.	LowGQX	END=8555224	GT	./.
chr1	8557463	.	A	.	.	LowGQX	END=8557591	GT	./.
chr1	8568661	.	A	.	.	LowGQX	END=8568760	GT	./.
chr1	8585781	.	A	.	.	LowGQX	END=8585880	GT	./.
chr1	8601271	.	A	.	.	LowGQX	END=8601379	GT	./.
chr1	8616532	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8616533	.	C	.	.	LowGQX	END=8616534	GT	./.
chr1	8616535	.	T	.	.	LowGQX	END=8616538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8616539	.	G	.	.	LowGQX	.	GT	./.
chr1	8616540	.	G	.	.	LowGQX	END=8616554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8616555	.	G	.	.	LowGQX	.	GT	./.
chr1	8616556	.	T	.	.	LowGQX	END=8616560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8616561	.	A	.	.	LowGQX	.	GT	./.
chr1	8616562	.	C	.	.	LowGQX	END=8616569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8616570	.	G	.	.	LowGQX	.	GT	./.
chr1	8616571	.	A	.	.	LowGQX	END=8616583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8616584	.	T	.	.	LowGQX	.	GT	./.
chr1	8616585	.	C	.	.	LowGQX	END=8616586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8616587	.	G	.	.	LowGQX	END=8616632	GT	./.
chr1	8617475	.	A	.	.	LowGQX	END=8617602	GT	./.
chr1	8617603	.	G	.	.	LowGQX	END=8617634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8674618	.	A	.	.	LowGQX	END=8674747	GT	./.
chr1	8684355	.	T	.	.	LowGQX	END=8684454	GT	./.
chr1	8716030	.	A	.	.	LowGQX	END=8716037	GT	./.
chr1	8716038	.	G	.	.	LowGQX	END=8716148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8716149	.	C	.	.	LowGQX	END=8716358	GT	./.
chr1	8921404	.	T	.	.	PASS	END=8921418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	8921419	.	T	.	.	PASS	END=8921503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	8922926	.	T	.	.	PASS	END=8922955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	8922956	.	G	.	.	PASS	END=8923025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	8923261	.	T	.	.	PASS	END=8923300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	8923301	.	G	.	.	PASS	END=8923387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	8923388	.	T	.	.	PASS	END=8923404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	8923948	.	A	.	.	PASS	END=8923967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	8923968	.	A	.	.	PASS	END=8924009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	8924010	.	G	.	.	PASS	END=8924079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	8924080	.	T	.	.	PASS	END=8924128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	8924129	.	A	.	.	PASS	END=8924153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	8925342	.	A	.	.	PASS	END=8925363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	8925364	.	G	.	.	PASS	END=8925401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	8925402	.	C	.	.	PASS	END=8925513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	8925514	.	C	.	.	PASS	END=8925536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	8925537	.	C	.	.	PASS	END=8925543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	8926336	.	A	.	.	PASS	END=8926380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	8926381	.	C	.	.	PASS	END=8926452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	8926453	.	A	.	.	PASS	END=8926548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	8926549	.	G	.	.	PASS	END=8926562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	8927174	.	A	.	.	PASS	END=8927226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:77:60
chr1	8927227	.	G	.	.	PASS	END=8927311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	8928032	.	C	.	.	PASS	END=8928101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	8928102	.	T	.	.	PASS	END=8928131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	8930491	.	T	.	.	PASS	END=8930511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	8930512	.	T	.	.	PASS	END=8930590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	8931948	.	A	.	.	PASS	END=8931997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	8931998	.	C	.	.	PASS	END=8932025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr1	8932026	.	C	.	.	PASS	END=8932047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:307:99:60
chr1	8934879	.	A	.	.	PASS	END=8934932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	8934933	.	A	.	.	PASS	END=8934978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	8938639	.	C	.	.	LowGQX	END=8938679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	8938680	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	8938681	.	G	.	.	LowGQX	END=8938695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	8938696	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	8938697	.	T	.	.	LowGQX	END=8938704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	8938705	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	8938706	.	A	.	.	LowGQX	END=8938722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	8938723	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	8938724	.	G	.	.	LowGQX	END=8938791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8938792	.	A	.	.	LowGQX	END=8938793	GT	./.
chr1	8938794	.	C	.	.	LowGQX	END=8938823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8938824	.	A	.	.	LowGQX	.	GT	./.
chr1	8938825	.	G	.	.	LowGQX	END=8938836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	8938837	.	C	.	.	LowGQX	.	GT	./.
chr1	8938838	.	A	.	.	LowGQX	END=8938862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9005876	.	A	.	.	PASS	END=9005912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	9005913	.	C	.	.	PASS	END=9005935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	9005936	.	G	.	.	PASS	END=9006005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	9006006	.	T	.	.	PASS	END=9006035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	9009320	.	A	.	.	PASS	END=9009344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	9009345	.	T	.	.	PASS	END=9009405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	9009406	.	C	T	2494.69	PASS	BaseQRankSum=3.517;DP=255;Dels=0.00;FS=1.017;HRun=0;HaplotypeScore=16.1929;MQ=60;MQ0=0;MQRankSum=-0.078;QD=9.78;ReadPosRankSum=0.690;SB=-1405.51	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:144,110:255:99:2525,0,3303:60:99:0.433
chr1	9009407	.	G	.	.	PASS	END=9009443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:60
chr1	9009444	.	A	C	2358.85	PASS	BaseQRankSum=1.610;DP=240;Dels=0.00;FS=1.043;HRun=0;HaplotypeScore=21.0959;MQ=60;MQ0=0;MQRankSum=-0.911;QD=9.83;ReadPosRankSum=1.277;SB=-1309.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:137,103:240:99:2389,0,3237:60:99:0.429
chr1	9009445	.	T	.	.	PASS	END=9009486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	9009487	.	A	.	.	PASS	END=9009503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	9009504	.	A	.	.	PASS	END=9009519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	9011481	.	G	.	.	LowGQX	END=9011483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9011484	.	T	.	.	LowGQX	.	GT	./.
chr1	9011485	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9011486	.	G	.	.	LowGQX	.	GT	./.
chr1	9011487	.	C	.	.	LowGQX	END=9011490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9011491	.	C	.	.	LowGQX	.	GT	./.
chr1	9011492	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9011493	.	G	.	.	LowGQX	.	GT	./.
chr1	9011494	.	A	.	.	LowGQX	END=9011496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9011497	.	T	.	.	LowGQX	.	GT	./.
chr1	9011498	.	C	.	.	LowGQX	END=9011527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9011528	.	A	.	.	LowGQX	.	GT	./.
chr1	9011529	.	G	.	.	LowGQX	END=9011563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9011564	.	T	.	.	LowGQX	.	GT	./.
chr1	9011565	.	T	.	.	LowGQX	END=9011623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9011624	.	A	.	.	LowGQX	END=9011762	GT	./.
chr1	9017194	.	A	.	.	PASS	END=9017203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	9017204	.	A	G	323.03	PASS	BaseQRankSum=0.395;DP=28;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=5.6815;MQ=60;MQ0=0;MQRankSum=-0.255;QD=11.54;ReadPosRankSum=2.019;SB=-136.20	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:12,16:28:99:353,0,265:60:99:0.571
chr1	9017205	.	G	.	.	PASS	END=9017209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	9017210	.	C	.	.	PASS	END=9017216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	9017217	.	C	.	.	PASS	END=9017243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr1	9017244	.	C	.	.	PASS	END=9017346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:87:60
chr1	9018966	.	C	.	.	PASS	END=9019003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	9019004	.	C	.	.	PASS	END=9019065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	9022631	.	T	.	.	PASS	END=9022730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	9027716	.	A	.	.	PASS	END=9027734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	9027735	.	A	.	.	PASS	END=9027877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	9030924	.	A	.	.	PASS	END=9030970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	9030971	.	A	.	.	PASS	END=9031021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	9031022	.	T	.	.	PASS	END=9031042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	9034405	.	G	.	.	PASS	END=9034420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	9034421	.	G	A	842.83	PASS	BaseQRankSum=4.329;DP=72;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.4657;MQ=60;MQ0=0;MQRankSum=-0.386;QD=11.71;ReadPosRankSum=-0.628;SB=-444.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,33:72:99:873,0,904:60:99:0.465
chr1	9034422	.	G	.	.	PASS	END=9034504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	9034619	.	T	.	.	PASS	END=9034638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	9034639	.	G	.	.	PASS	END=9034701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	9034702	.	T	.	.	PASS	END=9034772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	9063357	.	C	.	.	LowGQX	END=9063579	GT	./.
chr1	9064809	.	A	.	.	LowGQX	END=9064857	GT	./.
chr1	9064858	.	G	.	.	LowGQX	END=9064871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9064872	.	A	.	.	LowGQX	.	GT	./.
chr1	9064873	.	C	.	.	LowGQX	END=9064911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9064912	.	C	.	.	LowGQX	.	GT	./.
chr1	9064913	.	G	.	.	LowGQX	END=9064940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9067357	.	G	.	.	LowGQX	END=9067456	GT	./.
chr1	9070200	.	A	.	.	LowGQX	END=9070305	GT	./.
chr1	9073582	.	A	.	.	LowGQX	END=9073696	GT	./.
chr1	9074728	.	C	.	.	LowGQX	END=9074906	GT	./.
chr1	9074907	.	G	.	.	LowGQX	END=9074929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9075133	.	C	.	.	LowGQX	END=9075149	GT	./.
chr1	9075150	.	T	.	.	LowGQX	END=9075152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9075153	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	9075154	.	A	.	.	LowGQX	END=9075208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9075209	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	9075210	.	C	.	.	LowGQX	END=9075293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9075294	.	C	.	.	LowGQX	END=9075303	GT	./.
chr1	9078280	.	A	.	.	LowGQX	END=9078423	GT	./.
chr1	9078424	.	G	.	.	LowGQX	END=9078436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9079266	.	A	.	.	LowGQX	END=9079346	GT	./.
chr1	9079347	.	G	.	.	LowGQX	END=9079349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9079350	.	G	.	.	LowGQX	.	GT	./.
chr1	9079351	.	G	.	.	LowGQX	END=9079358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9079359	.	G	.	.	LowGQX	.	GT	./.
chr1	9079360	.	G	.	.	LowGQX	END=9079362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9079363	.	A	.	.	LowGQX	.	GT	./.
chr1	9079364	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9079365	.	G	.	.	LowGQX	END=9079366	GT	./.
chr1	9079367	.	T	.	.	LowGQX	END=9079368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9079369	.	T	.	.	LowGQX	END=9079370	GT	./.
chr1	9079371	.	G	.	.	LowGQX	END=9079390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9079391	.	T	.	.	LowGQX	.	GT	./.
chr1	9079392	.	T	.	.	LowGQX	END=9079394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9082975	.	A	.	.	LowGQX	END=9083139	GT	./.
chr1	9085033	.	A	.	.	LowGQX	END=9085047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9085048	.	T	.	.	LowGQX	.	GT	./.
chr1	9085049	.	T	.	.	LowGQX	END=9085050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9085051	.	A	.	.	LowGQX	.	GT	./.
chr1	9085052	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9085053	.	C	.	.	LowGQX	.	GT	./.
chr1	9085054	.	A	.	.	LowGQX	END=9085062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9085063	.	T	.	.	LowGQX	.	GT	./.
chr1	9085064	.	T	.	.	LowGQX	END=9085068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9085069	.	C	.	.	LowGQX	.	GT	./.
chr1	9085070	.	C	.	.	LowGQX	END=9085086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9085087	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	9085088	.	C	.	.	LowGQX	END=9085108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9085109	.	C	.	.	LowGQX	.	GT	./.
chr1	9085110	.	C	.	.	LowGQX	END=9085120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9085121	.	T	.	.	LowGQX	.	GT	./.
chr1	9085122	.	C	.	.	LowGQX	END=9085125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9085126	.	T	.	.	LowGQX	.	GT	./.
chr1	9085127	.	G	.	.	LowGQX	END=9085135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9086270	.	C	.	.	LowGQX	END=9086296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9086297	.	A	.	.	LowGQX	END=9086429	GT	./.
chr1	9097643	.	A	.	.	LowGQX	END=9097850	GT	./.
chr1	9097954	.	A	.	.	LowGQX	END=9098085	GT	./.
chr1	9098478	.	T	.	.	LowGQX	END=9098529	GT	./.
chr1	9098530	.	G	.	.	LowGQX	END=9098577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9098885	.	A	.	.	LowGQX	END=9098990	GT	./.
chr1	9099609	.	A	.	.	LowGQX	END=9099723	GT	./.
chr1	9099857	.	A	.	.	LowGQX	END=9100048	GT	./.
chr1	9100121	.	A	.	.	LowGQX	END=9100282	GT	./.
chr1	9101679	.	G	.	.	LowGQX	END=9101697	GT	./.
chr1	9101698	.	G	.	.	LowGQX	END=9101714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9101715	.	A	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	9101716	.	C	.	.	LowGQX	END=9101735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9101736	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	9101737	.	C	.	.	LowGQX	END=9101749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9101750	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	9101751	.	G	.	.	LowGQX	END=9101758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9101759	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	9101760	.	T	.	.	LowGQX	END=9101776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9101777	.	A	.	.	LowGQX	.	GT	./.
chr1	9101778	.	A	.	.	LowGQX	END=9101785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9101786	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	9101787	.	G	.	.	LowGQX	END=9101812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9101813	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	9101814	.	G	.	.	LowGQX	END=9101819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9101820	.	G	T	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	9101821	.	C	.	.	LowGQX	END=9101886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9101887	.	C	.	.	LowGQX	END=9101960	GT	./.
chr1	9101961	.	C	.	.	LowGQX	END=9101998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9107667	.	A	.	.	LowGQX	END=9107795	GT	./.
chr1	9109158	.	C	.	.	LowGQX	END=9109274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9117505	.	A	.	.	LowGQX	END=9117578	GT	./.
chr1	9117579	.	G	.	.	LowGQX	END=9117585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9117586	.	A	.	.	LowGQX	.	GT	./.
chr1	9117587	.	C	.	.	LowGQX	END=9117694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9118209	.	A	.	.	LowGQX	END=9118311	GT	./.
chr1	9129530	.	C	.	.	LowGQX	END=9129629	GT	./.
chr1	9164476	.	G	.	.	LowGQX	END=9164507	GT	./.
chr1	9164508	.	T	.	.	LowGQX	END=9164532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9164533	.	T	.	.	LowGQX	.	GT	./.
chr1	9164534	.	T	.	.	LowGQX	END=9164536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9164537	.	A	.	.	LowGQX	.	GT	./.
chr1	9164538	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9164539	.	G	.	.	LowGQX	.	GT	./.
chr1	9164540	.	G	.	.	LowGQX	END=9164545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9164546	.	G	.	.	LowGQX	.	GT	./.
chr1	9164547	.	A	.	.	LowGQX	END=9164557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9164558	.	T	.	.	LowGQX	.	GT	./.
chr1	9164559	.	G	.	.	LowGQX	END=9164561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9164562	.	A	.	.	LowGQX	.	GT	./.
chr1	9164563	.	G	.	.	LowGQX	END=9164569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9164570	.	T	.	.	LowGQX	.	GT	./.
chr1	9164571	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9164572	.	T	.	.	LowGQX	.	GT	./.
chr1	9164573	.	T	.	.	LowGQX	END=9164575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9164576	.	T	.	.	LowGQX	.	GT	./.
chr1	9164577	.	G	.	.	LowGQX	END=9164582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9164583	.	C	.	.	LowGQX	END=9164584	GT	./.
chr1	9164585	.	G	.	.	LowGQX	END=9164592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9164593	.	C	.	.	LowGQX	.	GT	./.
chr1	9164594	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9164595	.	G	.	.	LowGQX	END=9164596	GT	./.
chr1	9164597	.	A	.	.	LowGQX	END=9164602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9164603	.	A	.	.	LowGQX	.	GT	./.
chr1	9164604	.	A	.	.	LowGQX	END=9164607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9164608	.	A	.	.	LowGQX	.	GT	./.
chr1	9164609	.	G	.	.	LowGQX	END=9164622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9164623	.	G	.	.	LowGQX	.	GT	./.
chr1	9164624	.	T	.	.	LowGQX	END=9164628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9164629	.	A	.	.	LowGQX	.	GT	./.
chr1	9164630	.	C	.	.	LowGQX	END=9164637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9164638	.	G	.	.	LowGQX	END=9164639	GT	./.
chr1	9164640	.	G	.	.	LowGQX	END=9164647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9164648	.	C	.	.	LowGQX	.	GT	./.
chr1	9164649	.	G	.	.	LowGQX	END=9164658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9164659	.	C	.	.	LowGQX	END=9164695	GT	./.
chr1	9165543	.	A	.	.	LowGQX	.	GT	./.
chr1	9165544	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165545	.	A	.	.	LowGQX	END=9165556	GT	./.
chr1	9165557	.	C	.	.	LowGQX	END=9165561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165562	.	C	.	.	LowGQX	.	GT	./.
chr1	9165563	.	C	.	.	LowGQX	END=9165565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165566	.	C	.	.	LowGQX	END=9165568	GT	./.
chr1	9165569	.	C	.	.	LowGQX	END=9165572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165573	.	A	.	.	LowGQX	END=9165575	GT	./.
chr1	9165576	.	G	.	.	LowGQX	END=9165578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165579	.	G	.	.	LowGQX	.	GT	./.
chr1	9165580	.	G	.	.	LowGQX	END=9165581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165582	.	G	.	.	LowGQX	END=9165621	GT	./.
chr1	9165622	.	C	.	.	LowGQX	END=9165626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165627	.	A	.	.	LowGQX	.	GT	./.
chr1	9165628	.	G	.	.	LowGQX	END=9165630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165631	.	C	.	.	LowGQX	.	GT	./.
chr1	9165632	.	G	.	.	LowGQX	END=9165636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165637	.	A	.	.	LowGQX	.	GT	./.
chr1	9165638	.	G	.	.	LowGQX	END=9165639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165640	.	T	.	.	LowGQX	.	GT	./.
chr1	9165641	.	G	.	.	LowGQX	END=9165643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165644	.	C	.	.	LowGQX	END=9165645	GT	./.
chr1	9165646	.	G	.	.	LowGQX	END=9165647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165648	.	A	.	.	LowGQX	.	GT	./.
chr1	9165649	.	T	.	.	LowGQX	END=9165655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165656	.	C	.	.	LowGQX	END=9165657	GT	./.
chr1	9165658	.	G	.	.	LowGQX	END=9165659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165660	.	T	.	.	LowGQX	END=9165661	GT	./.
chr1	9165662	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165663	.	T	.	.	LowGQX	.	GT	./.
chr1	9165664	.	T	.	.	LowGQX	END=9165665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165666	.	T	.	.	LowGQX	.	GT	./.
chr1	9165667	.	C	.	.	LowGQX	END=9165675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165676	.	A	.	.	LowGQX	.	GT	./.
chr1	9165677	.	G	.	.	LowGQX	END=9165678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165679	.	A	.	.	LowGQX	.	GT	./.
chr1	9165680	.	G	.	.	LowGQX	END=9165684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165685	.	G	.	.	LowGQX	.	GT	./.
chr1	9165686	.	C	.	.	LowGQX	END=9165692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165693	.	C	.	.	LowGQX	.	GT	./.
chr1	9165694	.	G	.	.	LowGQX	END=9165698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165699	.	T	.	.	LowGQX	END=9165702	GT	./.
chr1	9165703	.	G	.	.	LowGQX	END=9165707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165708	.	A	.	.	LowGQX	END=9165709	GT	./.
chr1	9165710	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165711	.	A	.	.	LowGQX	END=9165712	GT	./.
chr1	9165713	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165714	.	G	.	.	LowGQX	.	GT	./.
chr1	9165715	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165716	.	C	.	.	LowGQX	.	GT	./.
chr1	9165717	.	C	.	.	LowGQX	END=9165722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165723	.	T	.	.	LowGQX	END=9165724	GT	./.
chr1	9165725	.	A	.	.	LowGQX	END=9165728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165729	.	A	.	.	LowGQX	.	GT	./.
chr1	9165730	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	9165731	.	T	.	.	LowGQX	END=9165733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165734	.	C	.	.	LowGQX	.	GT	./.
chr1	9165735	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165736	.	T	.	.	LowGQX	.	GT	./.
chr1	9165737	.	G	.	.	LowGQX	END=9165740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9165741	.	T	.	.	LowGQX	.	GT	./.
chr1	9171215	.	T	.	.	LowGQX	END=9171550	GT	./.
chr1	9188323	.	T	.	.	LowGQX	END=9188389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9188390	.	G	.	.	LowGQX	END=9189253	GT	./.
chr1	9211697	.	C	.	.	LowGQX	END=9211894	GT	./.
chr1	9242066	.	C	.	.	LowGQX	END=9242068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9242069	.	G	.	.	LowGQX	.	GT	./.
chr1	9242070	.	G	.	.	LowGQX	END=9242077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9242078	.	T	.	.	LowGQX	.	GT	./.
chr1	9242079	.	G	.	.	LowGQX	END=9242082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9242083	.	C	.	.	LowGQX	.	GT	./.
chr1	9242084	.	G	.	.	LowGQX	END=9242092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9242093	.	A	.	.	LowGQX	.	GT	./.
chr1	9242094	.	G	.	.	LowGQX	END=9242098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9242099	.	T	.	.	LowGQX	.	GT	./.
chr1	9242100	.	G	.	.	LowGQX	END=9242120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9242121	.	G	.	.	LowGQX	.	GT	./.
chr1	9242122	.	C	.	.	LowGQX	END=9242124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9242125	.	C	.	.	LowGQX	END=9242345	GT	./.
chr1	9304943	.	G	.	.	PASS	END=9304964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	9304965	.	G	.	.	PASS	END=9304978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	9304978	.	CCCCAGGCA	C	3310.28	PASS	BaseQRankSum=1.889;DP=65;FS=4.406;HRun=0;HaplotypeScore=115.1986;MQ=60;MQ0=0;MQRankSum=0.586;QD=50.93;ReadPosRankSum=2.381;SB=-408.55	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,32:65:99:3310,0,2699:60:99:0.492
chr1	9304979	.	C	.	117.24	PASS	DP=65;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:32:32:87.24:60:87
chr1	9304980	.	C	.	120.24	PASS	DP=65;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:32:32:90.25:60:90
chr1	9304981	.	C	.	114.23	PASS	DP=65;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:32:32:84.24:60:84
chr1	9304982	.	A	.	111.25	PASS	DP=65;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:32:32:81.26:60:81
chr1	9304983	.	G	.	114.25	PASS	DP=65;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:32:32:84.26:60:84
chr1	9304984	.	G	.	120.26	PASS	DP=65;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:32:32:90.26:60:90
chr1	9304985	.	C	.	120.26	PASS	DP=65;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:33:33:90.27:60:90
chr1	9304986	.	A	C	.	LowQD;SiteConflict;LowGQX	BaseQRankSum=0.268;DP=69;Dels=0.46;FS=0.000;HRun=3;HaplotypeScore=256.1051;MQ=60;MQ0=0;MQRankSum=-0.597;QD=1.01;ReadPosRankSum=-1.463;SB=-0.01	GT:AD:DP:MQ	.:31,6:37:60
chr1	9304987	.	C	.	.	PASS	END=9304999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	9305000	.	A	.	.	PASS	END=9305020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	9305021	.	T	.	.	PASS	END=9305037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	9305038	.	C	.	.	PASS	END=9305067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	9305068	.	T	.	.	PASS	END=9305100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	9305101	.	C	.	.	PASS	END=9305130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:260:99:60
chr1	9305131	.	G	.	.	PASS	END=9305329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:341:99:60
chr1	9305330	.	A	.	.	PASS	END=9305372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:271:99:60
chr1	9305373	.	A	.	.	PASS	END=9305426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	9305427	.	C	.	.	PASS	END=9305488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	9305489	.	G	.	.	PASS	END=9305530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	9305531	.	C	.	.	PASS	END=9305557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	9305558	.	G	.	.	PASS	END=9305593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	9305594	.	C	.	.	PASS	END=9305608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	9305609	.	T	.	.	PASS	END=9305639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	9305640	.	C	.	.	PASS	END=9305648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr1	9305649	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr1	9305650	.	T	.	.	PASS	END=9305654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	9305655	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:42:60
chr1	9305656	.	G	.	.	PASS	END=9305666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	9305667	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:54:60
chr1	9305668	.	G	.	.	PASS	END=9305669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	9305670	.	T	.	.	PASS	END=9305671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	9306974	.	C	.	.	PASS	END=9306992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	9306993	.	C	.	.	PASS	END=9307020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	9307021	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:79:59:60
chr1	9307022	.	C	.	.	PASS	END=9307151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	9307152	.	T	.	.	PASS	END=9307177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:78:60
chr1	9307178	.	C	.	.	PASS	END=9307191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	9307192	.	T	.	.	PASS	END=9307193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:75:60
chr1	9322067	.	T	.	.	PASS	END=9322085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	9322086	.	A	.	.	PASS	END=9322108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	9322109	.	C	.	.	PASS	END=9322134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	9322135	.	G	.	.	PASS	END=9322156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	9322157	.	A	.	.	PASS	END=9322171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	9322172	.	A	.	.	PASS	END=9322203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	9322204	.	G	.	.	PASS	END=9322311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr1	9322312	.	C	.	.	PASS	END=9322337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	9322338	.	A	.	.	PASS	END=9322358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	9322359	.	C	.	.	PASS	END=9322380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	9322381	.	T	.	.	PASS	END=9322401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	9322402	.	T	.	.	PASS	END=9322420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	9322421	.	T	.	.	PASS	END=9322426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	9322427	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:72:60
chr1	9322428	.	T	.	.	PASS	END=9322438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr1	9323517	.	A	.	.	PASS	END=9323519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	9323520	.	G	.	.	PASS	END=9323532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	9323533	.	C	.	.	PASS	END=9323547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	9323548	.	C	.	.	PASS	END=9323570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	9323571	.	T	.	.	PASS	END=9323608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	9323609	.	C	.	.	PASS	END=9323654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	9323655	.	A	.	.	PASS	END=9323767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	9323768	.	G	.	.	PASS	END=9323796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr1	9323797	.	C	.	.	PASS	END=9323893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:310:99:60
chr1	9323894	.	G	.	.	PASS	END=9323909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:406:99:60
chr1	9323910	.	G	A	5905.62	PASS	BaseQRankSum=3.208;DP=491;Dels=0.00;FS=1.994;HRun=0;HaplotypeScore=54.3804;MQ=60;MQ0=0;MQRankSum=0.700;QD=12.03;ReadPosRankSum=0.815;SB=-2971.82	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:244,245:491:99:5906,0,6318:60:99:0.501
chr1	9323911	.	G	.	.	PASS	END=9324043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:402:99:60
chr1	9324044	.	C	.	.	PASS	END=9324063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:299:99:60
chr1	9324064	.	A	.	.	PASS	END=9324164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr1	9324165	.	C	.	.	PASS	END=9324202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	9324203	.	C	.	.	PASS	END=9324237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	9324238	.	G	.	.	PASS	END=9324329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	9324330	.	C	.	.	PASS	END=9324373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	9324374	.	G	.	.	PASS	END=9324486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	9324487	.	G	.	.	PASS	END=9324547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	9324548	.	G	.	.	PASS	END=9324570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	9324571	.	T	C	3944.83	PASS	BaseQRankSum=1.642;DP=115;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.6178;MQ=60;MQ0=0;MQRankSum=0.798;QD=34.30;ReadPosRankSum=-1.612;SB=-1552.19	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,114:115:99:3945,313,0:60:99:0.991
chr1	9324572	.	G	.	.	PASS	END=9324661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	9324662	.	C	.	.	PASS	END=9324669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	9324670	.	A	G	4502.47	PASS	DP=145;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=19.0920;MQ=60;MQ0=0;QD=31.05;SB=-1847.99	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,143:145:99:4502,352,0:60:99:1.000
chr1	9324671	.	C	.	.	PASS	END=9324729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	9324730	.	C	.	.	PASS	END=9324754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	9324755	.	C	.	.	PASS	END=9324890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr1	9324891	.	T	.	.	PASS	END=9324907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	9324908	.	T	.	.	PASS	END=9324931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	9324932	.	C	.	.	PASS	END=9324969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	9324970	.	T	.	.	PASS	END=9324979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	9415949	.	A	.	.	LowGQX	END=9416318	GT	./.
chr1	9416319	.	C	.	.	LowGQX	END=9416339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9416340	.	A	.	.	LowGQX	.	GT	./.
chr1	9416341	.	A	.	.	LowGQX	END=9416359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9416360	.	A	.	.	LowGQX	.	GT	./.
chr1	9416361	.	C	.	.	LowGQX	END=9416385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9416386	.	C	.	.	LowGQX	.	GT	./.
chr1	9416387	.	G	.	.	LowGQX	END=9416388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9416389	.	A	.	.	LowGQX	.	GT	./.
chr1	9416390	.	A	.	.	LowGQX	END=9416436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9416437	.	G	.	.	LowGQX	.	GT	./.
chr1	9416438	.	C	.	.	LowGQX	END=9416471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9416472	.	T	.	.	LowGQX	.	GT	./.
chr1	9416473	.	G	.	.	LowGQX	END=9416487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9416488	.	G	.	.	LowGQX	.	GT	./.
chr1	9416489	.	C	.	.	LowGQX	END=9416549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9416550	.	T	.	.	LowGQX	END=9416646	GT	./.
chr1	9427455	.	T	.	.	LowGQX	END=9427579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9427580	.	G	.	.	LowGQX	END=9427636	GT	./.
chr1	9599669	.	A	.	.	LowGQX	END=9599828	GT	./.
chr1	9613682	.	A	.	.	LowGQX	END=9613865	GT	./.
chr1	9627331	.	T	.	.	LowGQX	END=9627332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9627333	.	A	.	.	LowGQX	.	GT	./.
chr1	9627334	.	T	.	.	LowGQX	END=9627338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9627339	.	C	.	.	LowGQX	END=9627340	GT	./.
chr1	9627341	.	G	.	.	LowGQX	END=9627343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9627344	.	C	.	.	LowGQX	.	GT	./.
chr1	9627345	.	G	.	.	LowGQX	END=9627347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9627348	.	C	.	.	LowGQX	.	GT	./.
chr1	9627349	.	T	.	.	LowGQX	END=9627352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9627353	.	A	.	.	LowGQX	.	GT	./.
chr1	9627354	.	G	.	.	LowGQX	END=9627358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9627359	.	A	.	.	LowGQX	.	GT	./.
chr1	9627360	.	G	.	.	LowGQX	END=9627369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9627370	.	T	.	.	LowGQX	.	GT	./.
chr1	9627371	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9627372	.	A	.	.	LowGQX	END=9627373	GT	./.
chr1	9627374	.	T	.	.	LowGQX	END=9627380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9627381	.	A	.	.	LowGQX	.	GT	./.
chr1	9627382	.	G	.	.	LowGQX	END=9627383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9627384	.	C	.	.	LowGQX	.	GT	./.
chr1	9627385	.	T	.	.	LowGQX	END=9627410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9627411	.	A	.	.	LowGQX	.	GT	./.
chr1	9627412	.	C	.	.	LowGQX	END=9627413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9627414	.	A	.	.	LowGQX	END=9627415	GT	./.
chr1	9627416	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9627417	.	A	.	.	LowGQX	END=9627418	GT	./.
chr1	9627419	.	G	.	.	LowGQX	END=9627422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9627423	.	A	.	.	LowGQX	.	GT	./.
chr1	9627424	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9627425	.	C	.	.	LowGQX	END=9627426	GT	./.
chr1	9627427	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9627428	.	T	.	.	LowGQX	END=9627429	GT	./.
chr1	9627430	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9630314	.	A	.	.	LowGQX	END=9630365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9630366	.	T	.	.	LowGQX	END=9630418	GT	./.
chr1	9633388	.	T	.	.	LowGQX	END=9633487	GT	./.
chr1	9640010	.	A	.	.	LowGQX	END=9640294	GT	./.
chr1	9642355	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642356	.	G	.	.	LowGQX	.	GT	./.
chr1	9642357	.	A	.	.	LowGQX	END=9642360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642361	.	C	.	.	LowGQX	.	GT	./.
chr1	9642362	.	A	.	.	LowGQX	END=9642365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642366	.	G	.	.	LowGQX	.	GT	./.
chr1	9642367	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642368	.	A	.	.	LowGQX	.	GT	./.
chr1	9642369	.	C	.	.	LowGQX	END=9642370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642371	.	A	.	.	LowGQX	.	GT	./.
chr1	9642372	.	G	.	.	LowGQX	END=9642373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642374	.	C	.	.	LowGQX	END=9642375	GT	./.
chr1	9642376	.	C	.	.	LowGQX	END=9642377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642378	.	G	.	.	LowGQX	.	GT	./.
chr1	9642379	.	G	.	.	LowGQX	END=9642388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642389	.	A	.	.	LowGQX	.	GT	./.
chr1	9642390	.	C	.	.	LowGQX	END=9642391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642392	.	A	.	.	LowGQX	.	GT	./.
chr1	9642393	.	A	.	.	LowGQX	END=9642395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642396	.	A	.	.	LowGQX	.	GT	./.
chr1	9642397	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642398	.	A	.	.	LowGQX	END=9642399	GT	./.
chr1	9642400	.	G	.	.	LowGQX	END=9642404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642405	.	T	.	.	LowGQX	.	GT	./.
chr1	9642406	.	T	.	.	LowGQX	END=9642409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642410	.	C	.	.	LowGQX	.	GT	./.
chr1	9642411	.	A	.	.	LowGQX	END=9642412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642413	.	A	.	.	LowGQX	END=9642414	GT	./.
chr1	9642415	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642416	.	G	.	.	LowGQX	.	GT	./.
chr1	9642417	.	C	.	.	LowGQX	END=9642423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642424	.	G	.	.	LowGQX	.	GT	./.
chr1	9642425	.	G	.	.	LowGQX	END=9642426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642427	.	G	.	.	LowGQX	.	GT	./.
chr1	9642428	.	T	.	.	LowGQX	END=9642435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642436	.	A	.	.	LowGQX	.	GT	./.
chr1	9642437	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642438	.	A	.	.	LowGQX	.	GT	./.
chr1	9642439	.	A	.	.	LowGQX	END=9642448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642449	.	G	.	.	LowGQX	.	GT	./.
chr1	9642450	.	C	.	.	LowGQX	END=9642452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642453	.	T	.	.	LowGQX	.	GT	./.
chr1	9642454	.	T	.	.	LowGQX	END=9642467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642468	.	T	.	.	LowGQX	.	GT	./.
chr1	9642469	.	T	.	.	LowGQX	END=9642470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642471	.	C	.	.	LowGQX	.	GT	./.
chr1	9642472	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642473	.	C	.	.	LowGQX	.	GT	./.
chr1	9642474	.	A	.	.	LowGQX	END=9642476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642477	.	T	.	.	LowGQX	.	GT	./.
chr1	9642478	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642479	.	A	.	.	LowGQX	.	GT	./.
chr1	9642480	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642481	.	C	.	.	LowGQX	.	GT	./.
chr1	9642482	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642483	.	G	.	.	LowGQX	END=9642535	GT	./.
chr1	9642536	.	C	.	.	LowGQX	END=9642537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642538	.	G	.	.	LowGQX	.	GT	./.
chr1	9642539	.	T	.	.	LowGQX	END=9642547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642548	.	C	.	.	LowGQX	END=9642549	GT	./.
chr1	9642550	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9642551	.	A	.	.	LowGQX	.	GT	./.
chr1	9642552	.	C	.	.	LowGQX	END=9642561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9648936	.	C	.	.	LowGQX	END=9649103	GT	./.
chr1	9655946	.	A	.	.	LowGQX	END=9656070	GT	./.
chr1	9656915	.	A	.	.	LowGQX	.	GT	./.
chr1	9656916	.	G	.	.	LowGQX	END=9656967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9656968	.	C	.	.	LowGQX	END=9656991	GT	./.
chr1	9656992	.	C	.	.	LowGQX	END=9656998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9656999	.	A	.	.	LowGQX	.	GT	./.
chr1	9657000	.	C	.	.	LowGQX	END=9657005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9657006	.	G	.	.	LowGQX	.	GT	./.
chr1	9657007	.	C	.	.	LowGQX	END=9657022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9657023	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	9657024	.	G	.	.	LowGQX	END=9657113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9658505	.	A	.	.	LowGQX	END=9658627	GT	./.
chr1	9658628	.	C	.	.	LowGQX	END=9658685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661161	.	A	.	.	LowGQX	END=9661163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661164	.	A	.	.	LowGQX	.	GT	./.
chr1	9661165	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661166	.	T	.	.	LowGQX	END=9661167	GT	./.
chr1	9661168	.	C	.	.	LowGQX	END=9661173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661174	.	C	.	.	LowGQX	.	GT	./.
chr1	9661175	.	G	.	.	LowGQX	END=9661181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661182	.	A	.	.	LowGQX	.	GT	./.
chr1	9661183	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661184	.	T	.	.	LowGQX	.	GT	./.
chr1	9661185	.	C	.	.	LowGQX	END=9661186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661187	.	C	.	.	LowGQX	.	GT	./.
chr1	9661188	.	C	.	.	LowGQX	END=9661190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661191	.	T	.	.	LowGQX	END=9661193	GT	./.
chr1	9661194	.	A	.	.	LowGQX	END=9661196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661197	.	T	.	.	LowGQX	.	GT	./.
chr1	9661198	.	C	.	.	LowGQX	END=9661199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661200	.	T	.	.	LowGQX	.	GT	./.
chr1	9661201	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661202	.	C	.	.	LowGQX	.	GT	./.
chr1	9661203	.	T	.	.	LowGQX	END=9661206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661207	.	C	.	.	LowGQX	.	GT	./.
chr1	9661208	.	C	.	.	LowGQX	END=9661209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661210	.	T	.	.	LowGQX	.	GT	./.
chr1	9661211	.	G	.	.	LowGQX	END=9661214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661215	.	T	.	.	LowGQX	.	GT	./.
chr1	9661216	.	C	.	.	LowGQX	END=9661217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661218	.	C	.	.	LowGQX	.	GT	./.
chr1	9661219	.	C	.	.	LowGQX	END=9661228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661229	.	T	.	.	LowGQX	END=9661230	GT	./.
chr1	9661231	.	C	.	.	LowGQX	END=9661233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661234	.	C	.	.	LowGQX	.	GT	./.
chr1	9661235	.	T	.	.	LowGQX	END=9661238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661239	.	T	.	.	LowGQX	.	GT	./.
chr1	9661240	.	A	.	.	LowGQX	END=9661245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661246	.	C	.	.	LowGQX	END=9661247	GT	./.
chr1	9661248	.	C	.	.	LowGQX	END=9661266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661267	.	C	.	.	LowGQX	.	GT	./.
chr1	9661268	.	G	.	.	LowGQX	END=9661273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661274	.	T	.	.	LowGQX	.	GT	./.
chr1	9661275	.	T	.	.	LowGQX	END=9661276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661277	.	G	.	.	LowGQX	.	GT	./.
chr1	9661278	.	C	.	.	LowGQX	END=9661283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661284	.	G	.	.	LowGQX	END=9661285	GT	./.
chr1	9661286	.	A	.	.	LowGQX	END=9661289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661290	.	C	.	.	LowGQX	.	GT	./.
chr1	9661291	.	T	.	.	LowGQX	END=9661292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9661293	.	T	.	.	LowGQX	END=9661514	GT	./.
chr1	9662125	.	A	.	.	LowGQX	END=9662199	GT	./.
chr1	9662200	.	C	.	.	LowGQX	END=9662203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662204	.	A	.	.	LowGQX	.	GT	./.
chr1	9662205	.	G	.	.	LowGQX	END=9662227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662228	.	A	.	.	LowGQX	.	GT	./.
chr1	9662229	.	C	.	.	LowGQX	END=9662235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662236	.	A	.	.	LowGQX	.	GT	./.
chr1	9662237	.	A	.	.	LowGQX	END=9662244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662245	.	A	.	.	LowGQX	.	GT	./.
chr1	9662246	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662247	.	C	.	.	LowGQX	END=9662248	GT	./.
chr1	9662249	.	C	.	.	LowGQX	END=9662251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662252	.	C	.	.	LowGQX	.	GT	./.
chr1	9662253	.	T	.	.	LowGQX	END=9662267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662268	.	T	.	.	LowGQX	.	GT	./.
chr1	9662269	.	G	.	.	LowGQX	END=9662274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662275	.	A	.	.	LowGQX	.	GT	./.
chr1	9662276	.	C	.	.	LowGQX	END=9662288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662289	.	C	.	.	LowGQX	END=9662291	GT	./.
chr1	9662292	.	A	.	.	LowGQX	END=9662296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662297	.	A	.	.	LowGQX	.	GT	./.
chr1	9662298	.	G	.	.	LowGQX	END=9662307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662308	.	C	.	.	LowGQX	.	GT	./.
chr1	9662309	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662310	.	A	.	.	LowGQX	END=9662311	GT	./.
chr1	9662312	.	G	.	.	LowGQX	END=9662313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662314	.	A	.	.	LowGQX	.	GT	./.
chr1	9662315	.	G	.	.	LowGQX	END=9662317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662318	.	T	.	.	LowGQX	END=9662319	GT	./.
chr1	9662320	.	C	.	.	LowGQX	END=9662323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662324	.	C	.	.	LowGQX	END=9662326	GT	./.
chr1	9662327	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662328	.	A	.	.	LowGQX	END=9662329	GT	./.
chr1	9662330	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662331	.	G	.	.	LowGQX	END=9662332	GT	./.
chr1	9662333	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662334	.	A	.	.	LowGQX	.	GT	./.
chr1	9662335	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662336	.	A	.	.	LowGQX	.	GT	./.
chr1	9662337	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662338	.	A	.	.	LowGQX	END=9662339	GT	./.
chr1	9662340	.	G	.	.	LowGQX	END=9662341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662342	.	A	.	.	LowGQX	.	GT	./.
chr1	9662343	.	G	.	.	LowGQX	END=9662344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662345	.	C	.	.	LowGQX	END=9662347	GT	./.
chr1	9662348	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9662349	.	A	.	.	LowGQX	END=9662351	GT	./.
chr1	9667614	.	G	.	.	LowGQX	END=9667771	GT	./.
chr1	9667772	.	A	.	.	LowGQX	END=9667847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9669884	.	C	.	.	LowGQX	END=9669886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9669887	.	T	.	.	LowGQX	.	GT	./.
chr1	9669888	.	C	.	.	LowGQX	END=9669889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9669890	.	G	.	.	LowGQX	END=9669983	GT	./.
chr1	9670563	.	G	.	.	LowGQX	END=9670863	GT	./.
chr1	9671053	.	T	.	.	LowGQX	END=9671152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9671770	.	A	.	.	LowGQX	END=9671948	GT	./.
chr1	9673043	.	G	.	.	LowGQX	END=9673142	GT	./.
chr1	9713836	.	T	.	.	LowGQX	END=9713855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9713856	.	T	.	.	LowGQX	.	GT	./.
chr1	9713857	.	T	.	.	LowGQX	END=9713904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9713905	.	G	.	.	LowGQX	END=9714101	GT	./.
chr1	9714204	.	C	.	.	LowGQX	END=9714503	GT	./.
chr1	9770463	.	G	.	.	PASS	END=9770492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	9770493	.	T	.	.	PASS	END=9770506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr1	9770507	.	A	.	.	PASS	END=9770522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	9770523	.	G	.	.	PASS	END=9770624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	9770625	.	C	.	.	PASS	END=9770644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	9770645	.	C	.	.	PASS	END=9770660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	9770661	.	C	.	.	PASS	END=9770667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	9770668	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:46:15:60
chr1	9770669	.	C	.	.	PASS	END=9770673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	9770674	.	C	.	.	PASS	END=9770682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	9770683	.	T	.	.	PASS	END=9770686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	9770687	.	G	.	.	PASS	END=9770688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	9770689	.	T	.	.	PASS	END=9770690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	9770691	.	A	.	78.15	PASS	DP=26;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:20:20:48.16:60:48
chr1	9770692	.	G	.	87.17	PASS	DP=26;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:20:20:57.18:60:57
chr1	9770693	.	A	.	.	PASS	END=9770705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	9775548	.	C	.	.	PASS	END=9775550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	9775551	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:47:60
chr1	9775552	.	C	.	.	PASS	END=9775578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:60
chr1	9775579	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:74:60
chr1	9775580	.	C	.	.	PASS	END=9775608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	9775609	.	A	.	.	PASS	END=9775632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	9775633	.	T	.	.	PASS	END=9775769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	9775770	.	G	.	.	PASS	END=9775808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	9775809	.	A	.	.	PASS	END=9775875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	9775876	.	A	.	.	PASS	END=9775887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	9775888	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:66:60
chr1	9775889	.	G	.	.	PASS	END=9775920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	9775921	.	G	.	.	PASS	END=9775933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	9775934	.	A	.	.	PASS	END=9776001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	9776002	.	C	.	.	PASS	END=9776046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	9776047	.	C	.	.	PASS	END=9776081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	9776082	.	C	.	.	PASS	END=9776094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	9776095	.	A	.	.	PASS	END=9776129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	9776130	.	C	.	.	PASS	END=9776137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	9776138	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:75:60
chr1	9776139	.	G	.	.	PASS	END=9776148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	9776149	.	G	.	.	PASS	END=9776150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	9776151	.	G	.	.	PASS	END=9776153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr1	9776154	.	C	.	.	PASS	END=9776155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:59:60
chr1	9776156	.	G	.	.	PASS	END=9776168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	9776169	.	T	.	.	PASS	END=9776184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	9776185	.	A	.	.	PASS	END=9776187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	9776447	.	G	.	.	PASS	END=9776472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	9776473	.	G	.	.	PASS	END=9776497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	9776498	.	G	.	.	PASS	END=9776533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	9776534	.	C	.	.	PASS	END=9776647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	9776648	.	T	.	.	PASS	END=9776680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	9776681	.	A	.	.	PASS	END=9776704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	9776705	.	T	.	.	PASS	END=9776728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	9776966	.	G	.	.	PASS	END=9776997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	9776998	.	A	.	.	PASS	END=9777028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	9777029	.	T	.	.	PASS	END=9777166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr1	9777167	.	G	.	.	PASS	END=9777198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	9777199	.	C	.	.	PASS	END=9777217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	9777544	.	G	.	.	PASS	END=9777563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	9777564	.	G	.	.	PASS	END=9777675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	9777676	.	C	.	.	PASS	END=9777700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	9777701	.	A	.	.	PASS	END=9777711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	9777712	.	A	.	.	PASS	END=9777735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	9778156	.	C	.	.	LowGQX	.	GT	./.
chr1	9778157	.	A	.	.	LowGQX	END=9778164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9778165	.	G	.	.	LowGQX	.	GT	./.
chr1	9778166	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9778167	.	C	.	.	LowGQX	.	GT	./.
chr1	9778168	.	A	.	.	LowGQX	END=9778169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9778170	.	G	.	.	LowGQX	.	GT	./.
chr1	9778171	.	G	.	.	LowGQX	END=9778174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9778175	.	T	.	.	LowGQX	.	GT	./.
chr1	9778176	.	T	.	.	LowGQX	END=9778187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9778188	.	T	.	.	LowGQX	.	GT	./.
chr1	9778189	.	G	.	.	LowGQX	END=9778191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9778192	.	G	.	.	LowGQX	.	GT	./.
chr1	9778193	.	G	.	.	LowGQX	END=9778202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9778203	.	C	.	.	LowGQX	.	GT	./.
chr1	9778204	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9778205	.	G	.	.	LowGQX	.	GT	./.
chr1	9778206	.	A	.	.	LowGQX	END=9778207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9778208	.	T	.	.	LowGQX	END=9778209	GT	./.
chr1	9778210	.	C	.	.	LowGQX	END=9778213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9778214	.	G	.	.	LowGQX	.	GT	./.
chr1	9778215	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9778216	.	G	.	.	LowGQX	END=9778218	GT	./.
chr1	9778219	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9778220	.	G	.	.	LowGQX	.	GT	./.
chr1	9778221	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9778222	.	C	.	.	LowGQX	.	GT	./.
chr1	9778223	.	C	.	.	LowGQX	END=9778246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9778247	.	T	.	.	LowGQX	END=9778255	GT	./.
chr1	9778701	.	A	.	.	PASS	END=9778702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	9778703	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:16:60
chr1	9778704	.	G	.	.	PASS	END=9778721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	9778722	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr1	9778723	.	C	.	.	PASS	END=9778725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	9778726	.	A	.	54.06	LowGQX	DP=20;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:15:20:24.07:60:24
chr1	9778727	.	C	.	.	PASS	END=9778729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	9778730	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:60
chr1	9778731	.	T	.	.	PASS	END=9778732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	9778733	.	A	.	.	PASS	END=9778738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	9778739	.	G	.	.	PASS	END=9778740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	9778741	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:27:60
chr1	9778742	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:48:60
chr1	9778743	.	C	.	.	PASS	END=9778746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	9778747	.	T	.	.	PASS	END=9778749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	9778750	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:60
chr1	9778751	.	G	.	.	PASS	END=9778753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	9778754	.	G	.	.	PASS	END=9778757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	9778758	.	G	.	.	PASS	END=9778761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	9778762	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:66:60
chr1	9778763	.	G	.	.	PASS	END=9778764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	9778765	.	C	.	.	PASS	END=9778767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	9778768	.	G	.	.	PASS	END=9778769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	9778770	.	C	.	.	PASS	END=9778772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:63:60
chr1	9778773	.	T	.	.	PASS	END=9778776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:60
chr1	9778777	.	A	.	.	PASS	END=9778778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:60:60
chr1	9778779	.	G	.	.	PASS	END=9778792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:60
chr1	9778793	.	G	.	.	PASS	END=9778816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	9778817	.	G	.	.	PASS	END=9778850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	9778851	.	C	.	.	PASS	END=9778922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	9778923	.	A	.	.	PASS	END=9778969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	9778970	.	G	.	.	PASS	END=9778989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	9778990	.	G	.	.	PASS	END=9779023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	9779024	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:99:60
chr1	9779928	.	G	.	.	PASS	END=9779961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	9779962	.	G	.	.	PASS	END=9779995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	9779996	.	G	.	.	PASS	END=9780129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	9780130	.	C	.	.	PASS	END=9780168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	9780169	.	G	.	.	PASS	END=9780283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	9780284	.	A	.	.	PASS	END=9780303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	9780304	.	A	.	.	PASS	END=9780334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	9780335	.	C	.	.	PASS	END=9780351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	9780491	.	G	.	.	PASS	END=9780517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	9780518	.	T	.	.	PASS	END=9780524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	9780525	.	T	.	.	PASS	END=9780536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	9780537	.	C	.	.	PASS	END=9780548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	9780549	.	C	.	.	PASS	END=9780555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	9780556	.	A	.	.	PASS	END=9780584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	9780585	.	A	.	.	PASS	END=9780626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:59
chr1	9780627	.	G	.	.	PASS	END=9780686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	9780687	.	C	.	.	PASS	END=9780724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	9780725	.	T	.	.	PASS	END=9780754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	9780755	.	A	.	.	PASS	END=9780819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	9780820	.	C	.	.	PASS	END=9780867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	9780868	.	G	.	.	PASS	END=9780964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	9780965	.	C	.	.	PASS	END=9781005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	9781006	.	A	.	.	PASS	END=9781018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	9781134	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:66:58
chr1	9781135	.	C	.	.	PASS	END=9781138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:58
chr1	9781139	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:66:58
chr1	9781140	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:24:59
chr1	9781141	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:51:58
chr1	9781142	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:58
chr1	9781143	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:51:58
chr1	9781144	.	T	.	60.07	PASS	DP=17;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:12:17:30.08:59:30
chr1	9781145	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:51:59
chr1	9781146	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:33:59
chr1	9781147	.	C	.	.	PASS	END=9781154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:59
chr1	9781155	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:59
chr1	9781156	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:42:59
chr1	9781157	.	C	.	.	PASS	END=9781160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:59
chr1	9781161	.	A	.	.	PASS	END=9781163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	9781164	.	C	.	.	PASS	END=9781169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	9781170	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:36:60
chr1	9781171	.	T	.	.	PASS	END=9781174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	9781175	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:36:60
chr1	9781176	.	T	.	.	PASS	END=9781177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	9781178	.	C	.	.	PASS	END=9781184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr1	9781185	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:62:60
chr1	9781186	.	T	.	.	PASS	END=9781192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	9781193	.	C	.	.	PASS	END=9781203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	9781204	.	C	.	.	PASS	END=9781219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	9781220	.	C	.	.	PASS	END=9781241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	9781242	.	C	.	.	PASS	END=9781343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	9781344	.	G	.	.	PASS	END=9781357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	9781451	.	T	.	.	PASS	END=9781469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	9781470	.	G	.	.	PASS	END=9781514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	9781515	.	T	.	.	PASS	END=9781607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	9781608	.	A	.	.	PASS	END=9781676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	9781677	.	A	.	.	PASS	END=9781697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	9781768	.	G	.	.	PASS	END=9781789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	9781790	.	T	.	.	PASS	END=9781932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr1	9781933	.	C	.	.	PASS	END=9781969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	9781982	.	C	.	.	PASS	END=9782114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	9782115	.	A	.	.	PASS	END=9782156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	9782157	.	C	.	.	PASS	END=9782198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	9782199	.	T	.	.	PASS	END=9782308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	9782309	.	C	.	.	PASS	END=9782444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	9782445	.	G	.	.	PASS	END=9782465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	9782525	.	A	.	.	PASS	END=9782609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	9782610	.	T	.	.	PASS	END=9782636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	9782637	.	T	.	.	PASS	END=9782670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	9782671	.	A	.	.	PASS	END=9782687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	9782688	.	T	.	.	PASS	END=9782705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	9782706	.	C	.	.	PASS	END=9782715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	9783132	.	G	.	.	PASS	END=9783134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	9783135	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	9783136	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:51:60
chr1	9783137	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	9783138	.	G	.	.	PASS	END=9783144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	9783145	.	A	.	.	PASS	END=9783153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	9783154	.	T	.	.	PASS	END=9783159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	9783160	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:54:60
chr1	9783161	.	G	.	.	PASS	END=9783164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	9783165	.	C	.	.	PASS	END=9783167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	9783168	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:60:60
chr1	9783169	.	T	.	.	PASS	END=9783178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	9783179	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:72:60
chr1	9783180	.	T	.	.	PASS	END=9783186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	9783187	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:47:60
chr1	9783188	.	C	.	.	PASS	END=9783207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	9783208	.	A	.	.	PASS	END=9783226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:92:60
chr1	9783227	.	T	.	.	PASS	END=9783252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	9783253	.	A	.	.	PASS	END=9783364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	9783365	.	C	.	.	PASS	END=9783383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	9783384	.	C	.	.	PASS	END=9783401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	9783976	.	A	.	.	PASS	END=9784079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	9784080	.	G	.	.	PASS	END=9784143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr1	9784144	.	T	.	.	PASS	END=9784181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	9784182	.	G	.	.	PASS	END=9784201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	9784283	.	T	.	.	PASS	END=9784426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	9784427	.	T	.	.	PASS	END=9784471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	9784472	.	T	.	.	PASS	END=9784505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	9784506	.	G	.	.	PASS	END=9784530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	9784811	.	C	.	.	PASS	END=9784843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	9784844	.	T	.	.	PASS	END=9784862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	9784863	.	T	.	.	PASS	END=9784882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	9784883	.	G	.	.	PASS	END=9785004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	9785005	.	G	.	.	PASS	END=9785031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	9785032	.	T	.	.	PASS	END=9785033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	9785034	.	C	.	.	PASS	END=9785045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	9786916	.	G	.	.	PASS	END=9786931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	9786932	.	C	.	.	PASS	END=9786934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	9786935	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:75:60
chr1	9786936	.	T	.	.	PASS	END=9786954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	9786955	.	A	.	.	PASS	END=9786978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	9786979	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:74:69:60
chr1	9786980	.	T	.	.	PASS	END=9787081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	9787082	.	T	.	.	PASS	END=9787104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	9787105	.	T	.	.	PASS	END=9787120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:98:60
chr1	9787121	.	T	.	.	PASS	END=9787154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	9787155	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:87:60
chr1	9790564	.	G	.	.	LowGQX	END=9790765	GT	./.
chr1	9791180	.	C	.	.	LowGQX	END=9791300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9791301	.	T	C	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	9791302	.	C	.	.	LowGQX	END=9791335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9791336	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	9791337	.	T	.	.	LowGQX	END=9791340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	9791341	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	9791342	.	C	.	.	LowGQX	END=9791355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	9791356	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	9791357	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	9791358	.	G	.	.	LowGQX	END=9791381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	9791382	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	9791383	.	G	.	.	LowGQX	END=9791450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9791817	.	A	.	.	LowGQX	END=9791956	GT	./.
chr1	9793457	.	A	.	.	LowGQX	END=9793606	GT	./.
chr1	9794028	.	A	.	.	LowGQX	END=9794098	GT	./.
chr1	9794099	.	C	.	.	LowGQX	END=9794115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9794116	.	T	.	.	LowGQX	.	GT	./.
chr1	9794117	.	C	.	.	LowGQX	END=9794120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9794121	.	G	.	.	LowGQX	END=9794122	GT	./.
chr1	9794123	.	T	.	.	LowGQX	END=9794124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9794125	.	A	.	.	LowGQX	.	GT	./.
chr1	9794126	.	G	.	.	LowGQX	END=9794143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9794144	.	T	.	.	LowGQX	.	GT	./.
chr1	9794145	.	G	.	.	LowGQX	END=9794153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9794154	.	G	.	.	LowGQX	.	GT	./.
chr1	9794155	.	G	.	.	LowGQX	END=9794202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9795004	.	A	.	.	LowGQX	END=9795234	GT	./.
chr1	9795523	.	A	.	.	LowGQX	END=9795570	GT	./.
chr1	9795571	.	A	.	.	LowGQX	END=9795675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9795941	.	A	.	.	LowGQX	END=9796046	GT	./.
chr1	9796047	.	G	.	.	LowGQX	END=9796062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9796063	.	A	.	.	LowGQX	.	GT	./.
chr1	9796064	.	T	.	.	LowGQX	END=9796098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9796099	.	A	.	.	LowGQX	.	GT	./.
chr1	9796100	.	C	.	.	LowGQX	END=9796102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9797535	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9797536	.	T	.	.	LowGQX	.	GT	./.
chr1	9797537	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	9797538	.	G	.	.	LowGQX	END=9797542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9797543	.	A	.	.	LowGQX	.	GT	./.
chr1	9797544	.	A	.	.	LowGQX	END=9797545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9797546	.	A	.	.	LowGQX	.	GT	./.
chr1	9797547	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9797548	.	C	.	.	LowGQX	END=9797550	GT	./.
chr1	9797551	.	G	.	.	LowGQX	END=9797552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9797553	.	A	.	.	LowGQX	END=9797554	GT	./.
chr1	9797555	.	C	.	.	LowGQX	END=9797561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9797562	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	9797563	.	G	.	.	LowGQX	END=9797565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9797566	.	C	.	.	LowGQX	END=9797567	GT	./.
chr1	9797568	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9797569	.	A	.	.	LowGQX	.	GT	./.
chr1	9797570	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9797571	.	T	.	.	LowGQX	.	GT	./.
chr1	9797572	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9797573	.	A	.	.	LowGQX	.	GT	./.
chr1	9797574	.	C	.	.	LowGQX	END=9797577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9797578	.	C	.	.	LowGQX	END=9797634	GT	./.
chr1	9801150	.	A	.	.	LowGQX	END=9801305	GT	./.
chr1	9801306	.	A	.	.	LowGQX	END=9801316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9803940	.	A	.	.	LowGQX	END=9803950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9803951	.	C	.	.	LowGQX	.	GT	./.
chr1	9803952	.	T	.	.	LowGQX	END=9803964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9803965	.	C	.	.	LowGQX	.	GT	./.
chr1	9803966	.	T	.	.	LowGQX	END=9803972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9803973	.	C	.	.	LowGQX	.	GT	./.
chr1	9803974	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9803975	.	G	.	.	LowGQX	.	GT	./.
chr1	9803976	.	T	.	.	LowGQX	END=9803978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9803979	.	T	.	.	LowGQX	.	GT	./.
chr1	9803980	.	T	.	.	LowGQX	END=9803981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9803982	.	T	.	.	LowGQX	END=9804023	GT	./.
chr1	9804024	.	C	.	.	LowGQX	END=9804026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9804027	.	C	.	.	LowGQX	.	GT	./.
chr1	9804028	.	C	.	.	LowGQX	END=9804032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9804033	.	A	.	.	LowGQX	.	GT	./.
chr1	9804034	.	C	.	.	LowGQX	END=9804036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9804037	.	A	.	.	LowGQX	.	GT	./.
chr1	9804038	.	G	.	.	LowGQX	END=9804040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9804041	.	G	.	.	LowGQX	.	GT	./.
chr1	9804042	.	G	.	.	LowGQX	END=9804052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9804053	.	C	.	.	LowGQX	.	GT	./.
chr1	9804054	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9804055	.	G	.	.	LowGQX	.	GT	./.
chr1	9804056	.	A	.	.	LowGQX	END=9804060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9804061	.	T	.	.	LowGQX	.	GT	./.
chr1	9804062	.	A	.	.	LowGQX	END=9804065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9804451	.	A	.	.	LowGQX	END=9804634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9804635	.	A	.	.	LowGQX	END=9804703	GT	./.
chr1	9809517	.	A	.	.	LowGQX	END=9809521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9809522	.	A	.	.	LowGQX	END=9809706	GT	./.
chr1	9809820	.	A	.	.	LowGQX	END=9809827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9809828	.	A	.	.	LowGQX	.	GT	./.
chr1	9809829	.	C	.	.	LowGQX	END=9809842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9809843	.	T	.	.	LowGQX	.	GT	./.
chr1	9809844	.	G	.	.	LowGQX	END=9809847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9809848	.	T	.	.	LowGQX	END=9809849	GT	./.
chr1	9809850	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9809851	.	A	.	.	LowGQX	.	GT	./.
chr1	9809852	.	T	.	.	LowGQX	END=9809856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9809857	.	A	.	.	LowGQX	.	GT	./.
chr1	9809858	.	T	.	.	LowGQX	END=9809862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9809863	.	A	.	.	LowGQX	END=9809865	GT	./.
chr1	9809866	.	A	.	.	LowGQX	END=9809870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9809871	.	A	.	.	LowGQX	.	GT	./.
chr1	9809872	.	T	.	.	LowGQX	END=9809877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9809878	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	9809879	.	T	.	.	LowGQX	END=9809881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9809882	.	C	.	.	LowGQX	.	GT	./.
chr1	9809883	.	T	.	.	LowGQX	END=9809885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9809886	.	T	.	.	LowGQX	.	GT	./.
chr1	9809887	.	T	.	.	LowGQX	END=9809894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9809895	.	A	.	.	LowGQX	.	GT	./.
chr1	9809896	.	C	.	.	LowGQX	END=9809973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9811529	.	A	.	.	LowGQX	END=9811741	GT	./.
chr1	9815170	.	A	.	.	LowGQX	END=9815369	GT	./.
chr1	9816504	.	T	.	.	LowGQX	END=9816574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9816575	.	G	.	.	LowGQX	.	GT	./.
chr1	9816576	.	G	.	.	LowGQX	END=9816603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9833278	.	G	.	.	LowGQX	END=9833454	GT	./.
chr1	9883697	.	T	.	.	LowGQX	END=9883708	GT	./.
chr1	9883709	.	G	.	.	LowGQX	END=9883731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9883732	.	C	.	.	LowGQX	.	GT	./.
chr1	9883733	.	A	.	.	LowGQX	END=9883795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	9883796	.	A	.	.	LowGQX	END=9883847	GT	./.
chr1	9910756	.	G	.	.	LowGQX	END=9910855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9931241	.	T	.	.	LowGQX	END=9931392	GT	./.
chr1	9932025	.	A	.	.	LowGQX	END=9932124	GT	./.
chr1	9990437	.	T	.	.	LowGQX	END=9990536	GT	./.
chr1	9991940	.	G	.	.	LowGQX	END=9991945	GT	./.
chr1	9991946	.	C	.	.	LowGQX	END=9991968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9991969	.	T	.	.	LowGQX	.	GT	./.
chr1	9991970	.	C	.	.	LowGQX	END=9991972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9991973	.	A	.	.	LowGQX	.	GT	./.
chr1	9991974	.	C	.	.	LowGQX	END=9992031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9992032	.	T	.	.	LowGQX	.	GT	./.
chr1	9992033	.	A	.	.	LowGQX	END=9992036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9992037	.	A	.	.	LowGQX	.	GT	./.
chr1	9992038	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9992039	.	A	.	.	LowGQX	.	GT	./.
chr1	9992859	.	A	.	.	LowGQX	END=9992862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9992863	.	T	.	.	LowGQX	.	GT	./.
chr1	9992864	.	C	.	.	LowGQX	END=9992920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	9992921	.	T	.	.	LowGQX	END=9992958	GT	./.
chr1	9994818	.	A	.	.	LowGQX	END=9994920	GT	./.
chr1	9995548	.	A	.	.	LowGQX	END=9995687	GT	./.
chr1	9996575	.	A	.	.	LowGQX	END=9996583	GT	./.
chr1	9996584	.	C	.	.	LowGQX	END=9996685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10002716	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10002717	.	A	.	.	LowGQX	.	GT	./.
chr1	10002718	.	C	.	.	LowGQX	END=10002815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10032130	.	C	.	.	PASS	END=10032238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	10032239	.	T	.	.	PASS	END=10032248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	10035648	.	A	.	.	PASS	END=10035680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	10035681	.	T	.	.	PASS	END=10035724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	10035725	.	A	.	.	PASS	END=10035804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	10035805	.	G	.	.	PASS	END=10035834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	10035835	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:99:60
chr1	10041087	.	A	.	.	PASS	END=10041088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	10041089	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:69:60
chr1	10041090	.	C	.	.	PASS	END=10041125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	10041126	.	C	.	.	PASS	END=10041230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	10041286	.	A	.	.	PASS	END=10041288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:59
chr1	10041289	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:48:59
chr1	10041290	.	C	.	.	PASS	END=10041294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:59
chr1	10041295	.	T	.	.	PASS	END=10041296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:59
chr1	10041297	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:66:59
chr1	10041298	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:45:59
chr1	10041298	.	AT	A	40.56	LowQD;SB	BaseQRankSum=-1.967;DP=25;FS=0.000;HRun=13;HaplotypeScore=130.8988;MQ=59;MQ0=0;MQRankSum=0.514;QD=1.62;ReadPosRankSum=-0.938;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:16,5:25:79.59:80,0,352:59:41:0.238
chr1	10041299	.	T	.	75.11	LowQD	DP=26;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:19:19:45.11:58:45
chr1	10041300	.	T	.	.	PASS	END=10041302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:58
chr1	10041303	.	T	.	.	PASS	END=10041336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:58
chr1	10041337	.	G	.	.	PASS	END=10041355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:59
chr1	10041356	.	G	.	.	PASS	END=10041359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	10041360	.	T	.	.	PASS	END=10041366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	10041367	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	10041368	.	C	.	.	PASS	END=10041369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	10041370	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	10041371	.	C	.	.	PASS	END=10041372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	10041373	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	10041374	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	10041375	.	C	.	.	LowGQX	END=10041385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	10042357	.	A	.	.	PASS	END=10042388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	10042389	.	C	.	.	PASS	END=10042523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	10042524	.	T	.	.	PASS	END=10042579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	10042580	.	A	.	.	PASS	END=10042624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	10042625	.	A	.	.	PASS	END=10042702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	10042703	.	A	.	.	PASS	END=10042738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	10042739	.	A	.	.	PASS	END=10042755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	10042756	.	A	.	.	PASS	END=10042761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	10057245	.	C	.	.	LowGQX	END=10057403	GT	./.
chr1	10066954	.	T	.	.	LowGQX	END=10067239	GT	./.
chr1	10067626	.	A	.	.	LowGQX	END=10067808	GT	./.
chr1	10068229	.	A	.	.	LowGQX	END=10068230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10068231	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	10068232	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	10068233	.	T	.	.	LowGQX	END=10068241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10068242	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	10068243	.	T	.	.	LowGQX	END=10068259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10068260	.	C	.	.	LowGQX	END=10068334	GT	./.
chr1	10075816	.	T	.	.	LowGQX	END=10075915	GT	./.
chr1	10093691	.	A	.	.	LowGQX	END=10093790	GT	./.
chr1	10132084	.	A	.	.	LowGQX	END=10132283	GT	./.
chr1	10132508	.	A	.	.	LowGQX	END=10132607	GT	./.
chr1	10155517	.	A	.	.	LowGQX	END=10155656	GT	./.
chr1	10161160	.	T	.	.	LowGQX	END=10161259	GT	./.
chr1	10163004	.	A	.	.	LowGQX	END=10163036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10163037	.	A	.	.	LowGQX	END=10163152	GT	./.
chr1	10165572	.	A	.	.	LowGQX	END=10165804	GT	./.
chr1	10166253	.	A	.	.	LowGQX	END=10166532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10166533	.	T	.	.	LowGQX	END=10166643	GT	./.
chr1	10167250	.	T	.	.	LowGQX	END=10167381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10167382	.	T	.	.	LowGQX	END=10167432	GT	./.
chr1	10177465	.	C	.	.	LowGQX	END=10177660	GT	./.
chr1	10179569	.	A	.	.	LowGQX	END=10179573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10179574	.	T	.	.	LowGQX	.	GT	./.
chr1	10179575	.	G	.	.	LowGQX	END=10179576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10179577	.	A	.	.	LowGQX	.	GT	./.
chr1	10179578	.	G	.	.	LowGQX	END=10179581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10179582	.	G	.	.	LowGQX	END=10179583	GT	./.
chr1	10179584	.	C	.	.	LowGQX	END=10179589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10179590	.	T	.	.	LowGQX	.	GT	./.
chr1	10179591	.	C	.	.	LowGQX	END=10179597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10179598	.	C	.	.	LowGQX	.	GT	./.
chr1	10179599	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10179600	.	T	.	.	LowGQX	.	GT	./.
chr1	10179601	.	C	.	.	LowGQX	END=10179627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10179628	.	T	.	.	LowGQX	END=10179629	GT	./.
chr1	10179630	.	C	.	.	LowGQX	END=10179641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10179642	.	A	.	.	LowGQX	.	GT	./.
chr1	10179643	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10179644	.	T	.	.	LowGQX	.	GT	./.
chr1	10179645	.	A	.	.	LowGQX	END=10179650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10179651	.	A	.	.	LowGQX	.	GT	./.
chr1	10179652	.	G	.	.	LowGQX	END=10179658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10179659	.	T	.	.	LowGQX	.	GT	./.
chr1	10179660	.	A	.	.	LowGQX	END=10179673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10182018	.	A	.	.	LowGQX	END=10182136	GT	./.
chr1	10186844	.	T	.	.	LowGQX	END=10186943	GT	./.
chr1	10189429	.	T	.	.	LowGQX	END=10189528	GT	./.
chr1	10190556	.	A	.	.	LowGQX	END=10190676	GT	./.
chr1	10190771	.	A	.	.	LowGQX	END=10190873	GT	./.
chr1	10192425	.	A	.	.	LowGQX	END=10192542	GT	./.
chr1	10195044	.	A	.	.	LowGQX	END=10195109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10195110	.	T	.	.	LowGQX	END=10195246	GT	./.
chr1	10197123	.	A	.	.	LowGQX	END=10197265	GT	./.
chr1	10204996	.	A	.	.	LowGQX	END=10205099	GT	./.
chr1	10207019	.	A	.	.	LowGQX	END=10207150	GT	./.
chr1	10209240	.	A	.	.	LowGQX	END=10209248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10209249	.	C	.	.	LowGQX	.	GT	./.
chr1	10209250	.	T	.	.	LowGQX	END=10209342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10211382	.	A	.	.	LowGQX	END=10211594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10211595	.	C	.	.	LowGQX	.	GT	./.
chr1	10211596	.	C	.	.	LowGQX	END=10211617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10211618	.	A	.	.	LowGQX	.	GT	./.
chr1	10211619	.	G	.	.	LowGQX	END=10211621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10218412	.	A	.	.	LowGQX	END=10218416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10218417	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	10218418	.	T	.	.	LowGQX	END=10218429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10218430	.	A	.	.	LowGQX	.	GT	./.
chr1	10218431	.	G	.	.	LowGQX	END=10218438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10218439	.	T	.	5.68	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:2:0.01:60:0
chr1	10218440	.	G	.	.	LowGQX	END=10218442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10218443	.	T	.	.	LowGQX	.	GT	./.
chr1	10218444	.	T	.	.	LowGQX	END=10218454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10218455	.	T	.	.	LowGQX	.	GT	./.
chr1	10218456	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10218457	.	C	.	.	LowGQX	END=10218459	GT	./.
chr1	10218460	.	A	.	.	LowGQX	END=10218461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10218462	.	T	.	.	LowGQX	.	GT	./.
chr1	10218463	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10218464	.	C	.	.	LowGQX	.	GT	./.
chr1	10218465	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10218466	.	C	.	.	LowGQX	END=10218470	GT	./.
chr1	10218471	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10218472	.	T	.	.	LowGQX	END=10218474	GT	./.
chr1	10218475	.	T	.	.	LowGQX	END=10218476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10218477	.	G	.	.	LowGQX	.	GT	./.
chr1	10218478	.	C	.	.	LowGQX	END=10218479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10218480	.	C	.	.	LowGQX	.	GT	./.
chr1	10218481	.	C	.	.	LowGQX	END=10218501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10218502	.	A	.	.	LowGQX	.	GT	./.
chr1	10218503	.	A	.	.	LowGQX	END=10218522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10218523	.	C	.	.	LowGQX	END=10218542	GT	./.
chr1	10221198	.	A	.	.	LowGQX	END=10221346	GT	./.
chr1	10228192	.	A	.	.	LowGQX	END=10228330	GT	./.
chr1	10231194	.	A	.	.	LowGQX	END=10231329	GT	./.
chr1	10231330	.	G	.	.	LowGQX	END=10231353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10231354	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:3.01:60:3
chr1	10231355	.	G	.	.	LowGQX	END=10231389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	10238700	.	A	.	.	LowGQX	END=10238888	GT	./.
chr1	10239472	.	A	.	.	LowGQX	END=10239526	GT	./.
chr1	10239527	.	A	.	.	LowGQX	END=10239622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10239934	.	C	.	.	LowGQX	END=10240033	GT	./.
chr1	10292336	.	T	.	.	PASS	END=10292346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	10292347	.	A	.	.	PASS	END=10292357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	10292358	.	G	.	.	PASS	END=10292365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	10292366	.	A	.	.	PASS	END=10292476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	10292477	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:64:60
chr1	10292478	.	A	.	.	PASS	END=10292507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr1	10292508	.	T	.	.	PASS	END=10292512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	10292513	.	C	.	.	PASS	END=10292528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	10292529	.	A	.	.	PASS	END=10292543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	10316254	.	A	.	.	PASS	END=10316385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	10316386	.	G	.	.	PASS	END=10316402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	10316403	.	C	.	.	PASS	END=10316410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	10316411	.	G	.	.	PASS	END=10316432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	10318500	.	A	.	.	PASS	END=10318508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	10318509	.	T	.	.	PASS	END=10318521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:60
chr1	10318522	.	T	.	.	PASS	END=10318533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	10318534	.	C	.	.	PASS	END=10318539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	10318540	.	A	.	.	PASS	END=10318543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	10318544	.	T	.	.	PASS	END=10318554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	10318555	.	A	.	.	PASS	END=10318572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	10318573	.	C	.	.	PASS	END=10318593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	10318594	.	A	.	.	PASS	END=10318620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	10318621	.	C	.	.	PASS	END=10318651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	10318652	.	C	G	1241.92	PASS	BaseQRankSum=2.115;DP=82;Dels=0.00;FS=1.992;HRun=0;HaplotypeScore=2.8935;MQ=60;MQ0=0;MQRankSum=-0.056;QD=15.15;ReadPosRankSum=0.056;SB=-442.52	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:37,45:82:99:1272,0,852:60:99:0.549
chr1	10318653	.	T	.	.	PASS	END=10318725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	10318726	.	C	.	.	PASS	END=10318774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:97:60
chr1	10318775	.	T	.	.	PASS	END=10318781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	10321912	.	A	.	.	PASS	END=10321976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	10321977	.	T	.	.	PASS	END=10322048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	10322049	.	A	.	.	PASS	END=10322053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	10322054	.	G	A	1444.75	PASS	BaseQRankSum=0.262;DP=107;Dels=0.00;FS=1.611;HRun=0;HaplotypeScore=8.6278;MQ=60;MQ0=0;MQRankSum=-0.505;QD=13.50;ReadPosRankSum=-0.607;SB=-868.16	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:45,61:107:99:1475,0,1067:60:99:0.575
chr1	10322055	.	T	.	.	PASS	END=10322060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	10322061	.	C	.	.	PASS	END=10322079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	10327387	.	C	.	.	PASS	END=10327399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	10327400	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:70:60
chr1	10327401	.	T	.	.	PASS	END=10327406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	10327407	.	A	T	523.24	PASS	BaseQRankSum=0.575;DP=59;Dels=0.00;FS=2.481;HRun=0;HaplotypeScore=3.8932;MQ=60;MQ0=0;MQRankSum=-0.529;QD=8.87;ReadPosRankSum=1.327;SB=-211.83	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,25:59:99:553,0,698:60:99:0.424
chr1	10327408	.	C	.	.	PASS	END=10327442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	10327443	.	C	.	.	PASS	END=10327521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	10327522	.	C	.	.	PASS	END=10327544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	10327545	.	G	.	.	PASS	END=10327577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	10327578	.	A	.	.	PASS	END=10327580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	10327581	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:48:60
chr1	10327582	.	A	.	.	PASS	END=10327591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	10327592	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:63:60
chr1	10327593	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:36:60
chr1	10327594	.	A	.	.	PASS	END=10327598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	10327599	.	T	.	.	PASS	END=10327609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	10327610	.	A	.	.	PASS	END=10327612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr1	10327613	.	C	.	.	PASS	END=10327618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	10327619	.	A	.	.	PASS	END=10327622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	10327623	.	T	.	.	PASS	END=10327634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	10327635	.	T	.	.	PASS	END=10327639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	10327640	.	A	.	.	PASS	END=10327648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	10327649	.	T	.	.	PASS	END=10327655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	10327656	.	C	.	.	PASS	END=10327667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	10328159	.	A	.	.	PASS	END=10328168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	10328169	.	A	.	.	PASS	END=10328192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	10328193	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:57:60
chr1	10328194	.	C	.	.	PASS	END=10328209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	10328210	.	G	.	.	PASS	END=10328248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:83:60
chr1	10328249	.	T	.	.	PASS	END=10328328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	10328329	.	A	.	.	PASS	END=10328337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	10328338	.	C	T	589.63	PASS	BaseQRankSum=2.204;DP=63;Dels=0.00;FS=4.043;HRun=1;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=0.744;QD=9.36;ReadPosRankSum=-0.397;SB=-175.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,24:63:99:620,0,821:60:99:0.387
chr1	10328339	.	T	.	.	PASS	END=10328372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	10331509	.	C	.	.	PASS	END=10331602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	10331603	.	C	.	.	PASS	END=10331678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	10331679	.	C	.	.	PASS	END=10331688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	10332248	.	A	.	.	PASS	END=10332389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	10332390	.	G	.	.	PASS	END=10332400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	10332401	.	T	.	.	PASS	END=10332415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	10332462	.	C	.	.	PASS	END=10332506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	10332507	.	A	.	.	PASS	END=10332524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	10332525	.	A	.	.	PASS	END=10332554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	10332555	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:72:60
chr1	10332556	.	T	.	.	PASS	END=10332561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	10333031	.	C	.	.	LowGQX	END=10333035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10333036	.	G	.	.	LowGQX	.	GT	./.
chr1	10333037	.	T	.	.	LowGQX	END=10333072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10333073	.	A	.	.	LowGQX	.	GT	./.
chr1	10333074	.	T	.	.	LowGQX	END=10333077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10333078	.	T	.	.	LowGQX	END=10333089	GT	./.
chr1	10333090	.	G	.	.	LowGQX	END=10333130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10334928	.	G	.	.	LowGQX	END=10335017	GT	./.
chr1	10335018	.	G	.	.	LowGQX	END=10335027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10335435	.	A	.	.	PASS	END=10335572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	10335573	.	A	.	.	PASS	END=10335612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	10336328	.	A	.	.	PASS	END=10336402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	10336403	.	T	.	.	PASS	END=10336459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	10336460	.	A	.	.	PASS	END=10336497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	10336498	.	C	.	.	PASS	END=10336508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	10337993	.	G	.	.	PASS	END=10338012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	10338013	.	T	.	.	PASS	END=10338054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:83:60
chr1	10338055	.	G	.	.	PASS	END=10338151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	10338152	.	T	.	.	PASS	END=10338161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	10338162	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:72:60
chr1	10338163	.	A	.	.	PASS	END=10338192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	10338193	.	G	.	.	PASS	END=10338221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	10338222	.	T	.	.	PASS	END=10338237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	10339126	.	C	.	.	LowGQX	END=10339225	GT	./.
chr1	10342369	.	C	.	.	PASS	END=10342377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	10342378	.	A	.	.	PASS	END=10342390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	10342391	.	T	.	.	PASS	END=10342396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	10342397	.	A	.	.	PASS	END=10342398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	10342399	.	C	.	.	PASS	END=10342419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	10342420	.	A	.	.	PASS	END=10342443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr1	10342444	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:73:60
chr1	10342445	.	C	.	.	PASS	END=10342469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	10342470	.	C	.	.	PASS	END=10342484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	10342485	.	C	.	.	PASS	END=10342513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	10342514	.	G	.	.	PASS	END=10342583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	10342584	.	G	.	.	PASS	END=10342620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	10342621	.	T	.	.	PASS	END=10342628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	10342629	.	G	A	1862.62	PASS	DP=65;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=28.66;SB=-869.61	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,65:65:99:1896,144,0:60:99:1.000
chr1	10342630	.	T	.	.	PASS	END=10342633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	10342634	.	T	.	.	PASS	END=10342642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	10351089	.	T	.	.	PASS	END=10351111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	10351112	.	C	.	.	PASS	END=10351121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	10351122	.	G	.	.	PASS	END=10351160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	10351161	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:51:60
chr1	10351162	.	A	.	.	PASS	END=10351211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	10351212	.	A	.	.	PASS	END=10351229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	10351230	.	T	.	.	PASS	END=10351254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	10351255	.	T	.	.	PASS	END=10351263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	10351264	.	A	.	.	PASS	END=10351270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	10352053	.	A	.	.	PASS	END=10352078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	10352079	.	T	.	.	PASS	END=10352154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	10352155	.	C	.	.	PASS	END=10352231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	10355093	.	A	.	.	PASS	END=10355143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	10355144	.	A	.	.	PASS	END=10355199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	10355200	.	T	.	.	PASS	END=10355232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	10355233	.	T	.	.	PASS	END=10355257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	10355258	.	T	.	.	PASS	END=10355274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	10355667	.	A	.	.	PASS	END=10355758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	10355759	.	T	.	.	PASS	END=10355801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	10355802	.	T	.	.	PASS	END=10355833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	10355834	.	C	T	1050.08	PASS	BaseQRankSum=1.361;DP=98;Dels=0.00;FS=4.232;HRun=2;HaplotypeScore=8.5223;MQ=60;MQ0=0;MQRankSum=0.612;QD=10.72;ReadPosRankSum=-0.374;SB=-499.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:57,41:98:99:1080,0,1349:60:99:0.418
chr1	10355835	.	C	.	.	PASS	END=10355872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	10355873	.	T	.	.	PASS	END=10355875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	10356589	.	T	.	.	PASS	END=10356691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	10356692	.	G	.	.	PASS	END=10356711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	10356712	.	A	.	.	PASS	END=10356736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	10356737	.	A	.	.	PASS	END=10356763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	10356764	.	A	.	.	PASS	END=10356774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	10356904	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:59:60
chr1	10356905	.	T	.	.	PASS	END=10356928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	10356929	.	A	.	.	PASS	END=10356936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	10356937	.	T	.	.	PASS	END=10356957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	10356958	.	A	.	.	PASS	END=10356959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	10356960	.	C	.	.	PASS	END=10356964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:87:60
chr1	10356965	.	C	.	.	PASS	END=10356973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:74:60
chr1	10356974	.	T	.	.	PASS	END=10356989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	10356990	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr1	10356991	.	G	.	.	PASS	END=10357004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	10357005	.	G	.	.	PASS	END=10357035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	10357036	.	C	.	.	PASS	END=10357051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	10357052	.	C	.	.	PASS	END=10357203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	10357204	.	G	T	4.95	LowGQX;LowQD;SB	BaseQRankSum=-4.458;DP=98;Dels=0.00;FS=86.918;HRun=2;HaplotypeScore=91.3801;MQ=60;MQ0=0;MQRankSum=-0.122;QD=0.05;ReadPosRankSum=0.937;SB=0.88	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:73,25:98:33.26:33,0,1892:60:5:0.255
chr1	10357205	.	A	.	.	PASS	END=10357206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	10357206	.	AT	A	162.58	LowQD	BaseQRankSum=0.889;DP=103;FS=8.599;HRun=17;HaplotypeScore=663.9378;MQ=60;MQ0=0;MQRankSum=-1.933;QD=1.58;ReadPosRankSum=0.636;SB=-86.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:66,15:103:99:202,0,853:60:99:0.185
chr1	10357207	.	T	.	207.54	LowQD	DP=112;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:83:83:99:60:99
chr1	10357208	.	T	.	.	PASS	END=10357241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	10357242	.	A	.	.	PASS	END=10357309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	10357310	.	A	.	.	PASS	END=10357333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	10357334	.	G	.	.	PASS	END=10357355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	10363170	.	A	.	.	PASS	END=10363172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	10363173	.	T	.	.	PASS	END=10363175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	10363176	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	10363177	.	T	.	.	PASS	END=10363184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	10363185	.	A	.	.	PASS	END=10363186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	10363187	.	T	.	.	PASS	END=10363190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	10363191	.	G	.	.	LowGQX	END=10363192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	10363193	.	G	.	.	PASS	END=10363194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	10363195	.	C	.	.	LowGQX	END=10363197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	10363198	.	T	.	.	PASS	END=10363201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	10363202	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	10363203	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	10363204	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:27:60
chr1	10363205	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:1:60
chr1	10363206	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:27:60
chr1	10363207	.	T	.	.	PASS	END=10363220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	10363221	.	G	.	.	PASS	END=10363224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	10363225	.	C	.	.	PASS	END=10363226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	10363227	.	G	.	.	PASS	END=10363245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	10363246	.	A	.	.	PASS	END=10363250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	10363251	.	G	.	.	PASS	END=10363265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	10363266	.	G	.	.	PASS	END=10363296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	10363297	.	G	.	.	PASS	END=10363332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	10363333	.	T	.	.	PASS	END=10363348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	10363349	.	C	.	.	PASS	END=10363393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	10363394	.	A	.	.	PASS	END=10363515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr1	10363516	.	A	.	.	PASS	END=10363600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	10363601	.	G	.	.	PASS	END=10363686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	10363687	.	A	.	.	PASS	END=10363837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	10363838	.	A	.	.	PASS	END=10363968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	10363969	.	A	.	.	PASS	END=10364008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	10364009	.	G	.	.	PASS	END=10364041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	10364042	.	A	.	.	PASS	END=10364047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	10364048	.	G	.	198.53	PASS	DP=84;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:67:84:99:60:99
chr1	10364049	.	G	.	.	PASS	END=10364055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	10364056	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:82:54:60
chr1	10364057	.	A	.	.	PASS	END=10364072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	10364073	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:71:60:60
chr1	10364074	.	A	.	.	PASS	END=10364097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	10364098	.	C	.	.	PASS	END=10364160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	10364161	.	G	.	.	PASS	END=10364190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	10364191	.	A	.	.	PASS	END=10364285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	10364286	.	G	.	.	PASS	END=10364410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	10364411	.	T	.	.	PASS	END=10364454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	10364455	.	A	.	.	PASS	END=10364476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	10364477	.	T	.	.	PASS	END=10364488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	10364489	.	T	.	.	PASS	END=10364501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	10364502	.	T	.	.	PASS	END=10364529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	10364530	.	A	.	.	PASS	END=10364545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	10364546	.	T	.	.	PASS	END=10364557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	10364558	.	T	.	.	PASS	END=10364563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	10364564	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:39:60
chr1	10364565	.	C	.	.	PASS	END=10364567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	10364568	.	T	.	.	PASS	END=10364569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	10364570	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:38:60
chr1	10364571	.	G	.	.	PASS	END=10364573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	10364574	.	G	.	.	PASS	END=10364577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	10364578	.	A	.	.	PASS	END=10364580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	10364581	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:63:60
chr1	10364582	.	A	.	.	PASS	END=10364588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	10364589	.	T	.	.	PASS	END=10364597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	10364598	.	A	.	.	PASS	END=10364602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	10364603	.	G	.	.	PASS	END=10364604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	10364605	.	C	.	.	PASS	END=10364609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	10364610	.	A	.	.	PASS	END=10364622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	10364623	.	G	.	.	PASS	END=10364627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	10364628	.	C	.	.	PASS	END=10364630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	10364631	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr1	10364632	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:36:60
chr1	10364633	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	10364634	.	G	.	.	PASS	END=10364658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	10364659	.	A	.	.	LowGQX	END=10364662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	10364663	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	10364664	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	10364665	.	C	.	.	PASS	END=10364668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	10364669	.	A	.	.	LowGQX	END=10364675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	10364676	.	C	.	.	LowGQX	END=10364681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	10364682	.	G	.	.	LowGQX	END=10364684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	10364685	.	G	.	.	LowGQX	END=10364708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	10364709	.	A	.	.	LowGQX	END=10364756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	10380050	.	C	.	.	PASS	END=10380064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	10380065	.	C	.	.	PASS	END=10380067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	10380068	.	C	.	.	PASS	END=10380079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:59
chr1	10380080	.	A	.	.	PASS	END=10380102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:59
chr1	10380103	.	C	.	.	PASS	END=10380245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:84:60
chr1	10381716	.	T	.	.	PASS	END=10381724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	10381725	.	G	.	.	PASS	END=10381742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	10381743	.	A	.	.	PASS	END=10381780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr1	10381781	.	C	.	.	PASS	END=10381855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	10381856	.	T	.	.	PASS	END=10381880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	10381881	.	A	.	.	PASS	END=10381902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	10381903	.	A	.	.	PASS	END=10381921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	10381922	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:44:60
chr1	10381923	.	G	.	.	PASS	END=10381929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	10381930	.	G	.	.	PASS	END=10381942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	10381943	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:60
chr1	10381944	.	G	.	.	PASS	END=10381960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	10381961	.	T	.	.	PASS	END=10381966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	10383891	.	G	.	.	PASS	END=10383909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	10383910	.	C	.	.	PASS	END=10383972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:87:60
chr1	10383973	.	C	.	.	PASS	END=10384046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	10384047	.	C	.	.	PASS	END=10384059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	10384060	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:60
chr1	10384061	.	A	.	.	PASS	END=10384062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	10384063	.	T	.	.	PASS	END=10384100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	10384101	.	T	.	.	PASS	END=10384115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	10384116	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:15:60
chr1	10384117	.	T	.	.	PASS	END=10384122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	10384123	.	A	.	.	PASS	END=10384156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	10384157	.	A	.	.	PASS	END=10384171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	10384765	.	T	.	.	PASS	END=10384771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr1	10384772	.	A	.	.	PASS	END=10384776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr1	10384777	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:34:24:60
chr1	10384778	.	A	.	.	PASS	END=10384785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:60
chr1	10384786	.	A	.	.	PASS	END=10384803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	10384804	.	T	.	.	PASS	END=10384840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:86:60
chr1	10384841	.	A	.	.	PASS	END=10384927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	10384928	.	T	.	.	PASS	END=10384958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	10384959	.	T	.	.	PASS	END=10384990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr1	10384991	.	A	.	.	PASS	END=10384995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	10384996	.	T	.	.	PASS	END=10385004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	10386118	.	A	.	.	PASS	END=10386128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	10386129	.	C	.	.	PASS	END=10386150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	10386151	.	G	.	.	PASS	END=10386162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	10386163	.	G	.	.	PASS	END=10386174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	10386175	.	C	.	.	PASS	END=10386178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	10386179	.	T	.	.	PASS	END=10386186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	10386187	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:66:60
chr1	10386188	.	T	.	.	PASS	END=10386209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	10386210	.	A	.	.	PASS	END=10386225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	10386226	.	C	.	.	PASS	END=10386326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	10386327	.	C	.	.	PASS	END=10386352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	10386353	.	G	.	.	PASS	END=10386360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	10386361	.	C	.	.	PASS	END=10386362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:75:60
chr1	10386363	.	G	.	.	PASS	END=10386388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	10386389	.	C	.	.	PASS	END=10386407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	10386408	.	T	.	.	PASS	END=10386435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	10386436	.	A	.	.	PASS	END=10386461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	10386462	.	G	.	.	PASS	END=10386468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	10394527	.	T	.	.	PASS	END=10394535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	10394536	.	C	G	1095.27	PASS	BaseQRankSum=1.260;DP=104;Dels=0.00;FS=5.804;HRun=0;HaplotypeScore=3.8932;MQ=60;MQ0=0;MQRankSum=-0.628;QD=10.53;ReadPosRankSum=0.944;SB=-244.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:60,44:104:99:1125,0,1378:60:99:0.423
chr1	10394537	.	C	.	.	PASS	END=10394587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	10394588	.	T	.	.	PASS	END=10394686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	10394687	.	G	.	.	PASS	END=10394720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	10394721	.	G	.	.	PASS	END=10394747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	10396664	.	T	.	.	PASS	END=10396665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	10396666	.	C	.	.	PASS	END=10396670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	10396671	.	G	.	.	PASS	END=10396731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	10396732	.	G	.	.	PASS	END=10396817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	10396818	.	A	.	.	PASS	END=10396851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	10397081	.	A	.	.	PASS	END=10397084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	10397085	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:40:60
chr1	10397086	.	G	.	.	PASS	END=10397096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	10397097	.	A	.	.	PASS	END=10397146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:80:60
chr1	10397147	.	G	.	.	PASS	END=10397165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	10397166	.	G	.	.	PASS	END=10397169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:98:60
chr1	10397170	.	G	.	.	PASS	END=10397197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	10397198	.	G	.	.	PASS	END=10397312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	10397378	.	C	.	.	PASS	END=10397406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	10397407	.	G	.	.	PASS	END=10397453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	10397454	.	T	.	.	PASS	END=10397546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	10397547	.	C	.	.	PASS	END=10397565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	10397566	.	T	.	.	PASS	END=10397575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	10397576	.	T	.	.	PASS	END=10397606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	10397607	.	G	.	.	PASS	END=10397642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	10399776	.	A	.	.	PASS	END=10399795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	10399796	.	G	.	.	PASS	END=10399932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	10399933	.	C	.	.	PASS	END=10399968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	10402057	.	G	.	.	PASS	END=10402058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:48:60
chr1	10402059	.	A	.	.	PASS	END=10402064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	10402065	.	G	.	.	PASS	END=10402067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:57:60
chr1	10402068	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:87:60
chr1	10402069	.	A	.	.	PASS	END=10402072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr1	10402073	.	T	.	.	PASS	END=10402083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	10402084	.	T	.	.	PASS	END=10402088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	10402089	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:46:60
chr1	10402090	.	A	.	.	PASS	END=10402092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	10402093	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:56:60
chr1	10402094	.	T	.	.	PASS	END=10402142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	10402143	.	C	.	.	PASS	END=10402200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	10402201	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:68:69:60
chr1	10402202	.	A	.	.	PASS	END=10402230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	10402231	.	G	.	.	PASS	END=10402274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	10402275	.	A	.	.	PASS	END=10402277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	10403228	.	G	.	.	PASS	END=10403325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	10403326	.	C	.	.	PASS	END=10403348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	10403349	.	A	.	.	PASS	END=10403380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	10403381	.	T	.	.	PASS	END=10403396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	10405852	.	T	.	.	PASS	END=10405883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	10405884	.	C	.	.	PASS	END=10405953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	10405954	.	T	.	.	PASS	END=10405978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	10405979	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:69:60
chr1	10405980	.	T	.	.	PASS	END=10405994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	10405995	.	C	.	.	PASS	END=10406008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	10406009	.	A	.	.	PASS	END=10406018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	10406019	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:3:60
chr1	10406020	.	A	.	.	PASS	END=10406034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	10406035	.	T	.	.	PASS	END=10406039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	10406040	.	A	.	.	PASS	END=10406054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	10406055	.	A	.	.	PASS	END=10406056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	10406057	.	A	.	.	PASS	END=10406062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	10407762	.	C	.	.	PASS	END=10407851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	10407852	.	C	.	.	PASS	END=10407905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	10407906	.	C	.	.	PASS	END=10407922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	10407923	.	A	.	.	PASS	END=10407936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	10408656	.	A	.	.	PASS	END=10408700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	10408701	.	A	.	.	PASS	END=10408766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	10408767	.	A	.	.	PASS	END=10408807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:79:60
chr1	10408808	.	A	.	.	PASS	END=10408818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:87:60
chr1	10408819	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:63:60
chr1	10408820	.	A	.	.	PASS	END=10408823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	10408824	.	A	.	.	PASS	END=10408825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:57:60
chr1	10408826	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:81:60
chr1	10408827	.	A	.	.	PASS	END=10408829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:60:60
chr1	10408830	.	T	.	.	PASS	END=10408833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:63:60
chr1	10408834	.	G	.	.	PASS	END=10408837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:42:60
chr1	10408838	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:78:59
chr1	10408839	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:59
chr1	10408840	.	T	.	.	PASS	END=10408842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:59
chr1	10412638	.	G	.	.	PASS	END=10412660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	10412661	.	G	.	.	PASS	END=10412703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	10412704	.	A	.	.	PASS	END=10412779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	10412780	.	C	.	.	PASS	END=10412810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	10412811	.	A	.	.	PASS	END=10412820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	10412821	.	A	.	.	PASS	END=10412844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	10412845	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:69:60
chr1	10420936	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:57:60
chr1	10420937	.	C	T	185.02	PASS	BaseQRankSum=0.598;DP=23;Dels=0.00;FS=2.128;HRun=0;HaplotypeScore=2.8832;MQ=60;MQ0=0;MQRankSum=-0.787;QD=8.04;ReadPosRankSum=0.913;SB=-21.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:14,9:23:99:215,0,433:60:99:0.391
chr1	10420938	.	G	.	.	PASS	END=10420951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	10420952	.	T	.	.	PASS	END=10420961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	10420962	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:33:60
chr1	10420963	.	T	.	.	PASS	END=10420973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	10420974	.	T	.	.	PASS	END=10420998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	10420999	.	C	.	.	PASS	END=10421008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	10421009	.	G	.	.	PASS	END=10421035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	10421036	.	C	.	.	PASS	END=10421148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	10421149	.	A	.	.	PASS	END=10421152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	10421699	.	G	.	.	PASS	END=10421721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	10421722	.	C	.	.	PASS	END=10421782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	10421783	.	A	.	.	PASS	END=10421838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	10421839	.	T	.	.	PASS	END=10421857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	10421858	.	A	.	.	PASS	END=10421874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	10421875	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:62:60
chr1	10421876	.	C	.	.	PASS	END=10421923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	10421924	.	A	.	.	PASS	END=10421931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	10421932	.	A	.	.	PASS	END=10421934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	10423290	.	C	.	.	PASS	END=10423354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	10423355	.	G	.	.	PASS	END=10423400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	10423401	.	A	.	.	PASS	END=10423412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	10423413	.	G	.	.	PASS	END=10423437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	10423438	.	T	.	.	PASS	END=10423453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	10425107	.	T	.	.	PASS	END=10425117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:59
chr1	10425117	.	AT	A	754.99	PASS	BaseQRankSum=-0.669;DP=77;FS=3.275;HRun=8;HaplotypeScore=410.8805;MQ=59;MQ0=0;MQRankSum=0.797;QD=9.81;ReadPosRankSum=-0.332;SB=-301.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:48,28:77:99:794,0,1100:59:99:0.368
chr1	10425118	.	T	.	135.33	PASS	DP=76;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:46:48:99:59:99
chr1	10425119	.	T	.	.	PASS	END=10425125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:59
chr1	10425126	.	C	.	147.50	PASS	DP=71;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:48:71:99:59:99
chr1	10425127	.	T	.	.	PASS	END=10425249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:95:59
chr1	10425250	.	A	.	.	PASS	END=10425307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:84:60
chr1	10425308	.	C	.	.	PASS	END=10425349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	10425350	.	T	.	.	PASS	END=10425354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	10425416	.	A	.	.	PASS	END=10425439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	10425440	.	C	.	.	PASS	END=10425487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	10425488	.	T	.	.	PASS	END=10425504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	10425505	.	A	.	.	PASS	END=10425550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	10425551	.	A	.	.	PASS	END=10425655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	10425656	.	T	.	.	PASS	END=10425701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	10425702	.	C	.	.	PASS	END=10425727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	10425728	.	C	.	.	PASS	END=10425757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	10428471	.	C	.	.	PASS	END=10428537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	10428538	.	T	.	.	PASS	END=10428573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	10428574	.	A	.	.	PASS	END=10428578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr1	10428579	.	A	.	.	PASS	END=10428582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	10428583	.	T	.	.	PASS	END=10428584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:57:60
chr1	10428585	.	A	.	.	PASS	END=10428593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	10428594	.	A	.	.	PASS	END=10428597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	10428598	.	T	.	.	PASS	END=10428611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	10428612	.	G	.	.	PASS	END=10428638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	10428639	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	10428640	.	G	.	.	PASS	END=10428646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	10428647	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	10431148	.	A	.	.	PASS	END=10431157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	10431158	.	T	C	1143.08	PASS	BaseQRankSum=-0.365;DP=107;Dels=0.00;FS=3.794;HRun=0;HaplotypeScore=6.7237;MQ=60;MQ0=0;MQRankSum=-0.446;QD=10.68;ReadPosRankSum=-2.292;SB=-653.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:56,51:107:99:1173,0,1431:60:99:0.477
chr1	10431159	.	T	.	.	PASS	END=10431240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	10431241	.	A	.	.	PASS	END=10431275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	10431276	.	C	.	.	PASS	END=10431290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	10431291	.	A	.	.	PASS	END=10431305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	10431306	.	C	.	.	PASS	END=10431330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	10431331	.	A	.	.	PASS	END=10431371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	10434323	.	T	.	.	PASS	END=10434342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr1	10434343	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:60
chr1	10434344	.	C	.	.	PASS	END=10434353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	10434354	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:63:60
chr1	10434355	.	T	.	.	PASS	END=10434381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	10434382	.	A	.	.	PASS	END=10434396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr1	10434397	.	C	.	.	PASS	END=10434443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:97:60
chr1	10434444	.	G	.	.	PASS	END=10434536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	10434537	.	T	.	.	PASS	END=10434560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:94:60
chr1	10434561	.	A	.	.	PASS	END=10434574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	10434861	.	G	.	.	PASS	END=10434887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	10434888	.	C	.	.	PASS	END=10434922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	10434923	.	C	.	.	PASS	END=10434961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	10434962	.	G	.	.	PASS	END=10435010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	10435011	.	C	.	.	PASS	END=10435064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	10435065	.	A	.	.	PASS	END=10435077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	10435078	.	A	.	.	PASS	END=10435104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	10435105	.	G	.	.	PASS	END=10435135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	10435136	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:60
chr1	10435137	.	C	.	.	PASS	END=10435155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	10435262	.	C	.	.	PASS	END=10435323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	10435324	.	C	A	895.35	PASS	BaseQRankSum=0.626;DP=68;Dels=0.00;FS=0.938;HRun=0;HaplotypeScore=7.7336;MQ=60;MQ0=0;MQRankSum=-2.430;QD=13.17;ReadPosRankSum=0.626;SB=-523.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,35:68:99:925,0,897:60:99:0.515
chr1	10435325	.	T	.	.	PASS	END=10435401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	10435402	.	C	.	.	PASS	END=10435420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	10435421	.	G	.	.	PASS	END=10435482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	10436552	.	C	.	.	PASS	END=10436650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	10436651	.	T	.	.	PASS	END=10436687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	10436688	.	A	.	.	PASS	END=10436696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	10438379	.	C	.	.	LowGQX	END=10438478	GT	./.
chr1	10459069	.	A	.	.	PASS	END=10459078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	10459079	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:63:60
chr1	10459080	.	T	.	.	PASS	END=10459083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	10459084	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:69:60
chr1	10459085	.	G	.	.	PASS	END=10459135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	10459136	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:73:60
chr1	10459137	.	G	.	.	PASS	END=10459166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:84:60
chr1	10459167	.	C	.	.	PASS	END=10459212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:79:60
chr1	10459213	.	G	.	.	PASS	END=10459228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:78:60
chr1	10459674	.	C	.	.	PASS	END=10459681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	10459682	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:39:60
chr1	10459683	.	T	.	.	PASS	END=10459705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	10459706	.	G	.	.	PASS	END=10459773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	10460448	.	A	.	.	PASS	END=10460470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	10460471	.	G	.	.	PASS	END=10460484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	10460485	.	T	C	2587.26	PASS	BaseQRankSum=-0.488;DP=205;Dels=0.00;FS=10.317;HRun=0;HaplotypeScore=16.1499;MQ=60;MQ0=0;MQRankSum=-0.236;QD=12.62;ReadPosRankSum=2.070;SB=-1321.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:92,111:205:99:2617,0,2350:60:99:0.547
chr1	10460486	.	G	.	.	PASS	END=10460590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	10460591	.	A	.	.	PASS	END=10460611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	10460612	.	G	.	.	PASS	END=10460631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	10463111	.	C	.	.	PASS	END=10463127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	10463128	.	G	.	.	PASS	END=10463156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	10463157	.	C	.	.	PASS	END=10463200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	10463201	.	T	.	.	PASS	END=10463210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	10464216	.	A	.	.	PASS	END=10464272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	10464273	.	G	.	.	PASS	END=10464320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	10464321	.	G	.	.	PASS	END=10464338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:81:60
chr1	10468113	.	T	.	.	PASS	END=10468145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:59
chr1	10468146	.	C	.	.	PASS	END=10468212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	10471473	.	A	.	.	PASS	END=10471510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	10471511	.	G	.	.	PASS	END=10471527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	10471528	.	G	.	.	PASS	END=10471611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	10473117	.	A	.	.	PASS	END=10473142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	10473143	.	G	.	.	PASS	END=10473195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	10473196	.	C	T	1963.36	PASS	BaseQRankSum=3.849;DP=184;Dels=0.00;FS=3.520;HRun=0;HaplotypeScore=13.4963;MQ=60;MQ0=0;MQRankSum=-0.639;QD=10.67;ReadPosRankSum=-0.306;SB=-1085.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:97,86:184:99:1993,0,2278:60:99:0.470
chr1	10473197	.	A	.	.	PASS	END=10473264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	10473265	.	C	.	.	PASS	END=10473289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	10473290	.	G	.	.	PASS	END=10473310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	10477042	.	A	.	.	PASS	END=10477065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	10477066	.	C	.	.	PASS	END=10477156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	10477157	.	C	.	.	PASS	END=10477176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	10477431	.	A	.	.	PASS	END=10477469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	10477470	.	G	.	.	PASS	END=10477543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	10477544	.	A	.	.	PASS	END=10477568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	10478881	.	A	.	.	PASS	END=10478984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	10479472	.	A	.	.	PASS	END=10479509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	10479510	.	G	.	.	PASS	END=10479598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	10479685	.	A	.	.	PASS	END=10479717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:59
chr1	10479718	.	A	.	.	PASS	END=10479773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:59
chr1	10479774	.	G	.	.	PASS	END=10479790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	10479791	.	G	.	.	PASS	END=10479808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	10490491	.	C	.	.	LowGQX	END=10490502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10490503	.	A	.	.	LowGQX	END=10490505	GT	./.
chr1	10490506	.	A	.	.	LowGQX	END=10490510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10490511	.	A	.	.	LowGQX	.	GT	./.
chr1	10490512	.	C	.	.	LowGQX	END=10490550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10490551	.	T	.	.	LowGQX	.	GT	./.
chr1	10490552	.	T	.	.	LowGQX	END=10490561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10490562	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	10490563	.	C	.	.	LowGQX	END=10490572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10490573	.	T	.	.	LowGQX	END=10490574	GT	./.
chr1	10490575	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10490576	.	T	.	.	LowGQX	.	GT	./.
chr1	10490577	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10490578	.	G	.	.	LowGQX	END=10490579	GT	./.
chr1	10490580	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10490581	.	G	.	.	LowGQX	.	GT	./.
chr1	10490582	.	A	.	.	LowGQX	END=10490589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10490590	.	G	.	.	LowGQX	.	GT	./.
chr1	10490591	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10490592	.	G	.	.	LowGQX	.	GT	./.
chr1	10490593	.	A	.	.	LowGQX	END=10490598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10490599	.	G	.	.	LowGQX	.	GT	./.
chr1	10490600	.	A	.	.	LowGQX	END=10490603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10490604	.	G	.	.	LowGQX	.	GT	./.
chr1	10490605	.	C	.	.	LowGQX	END=10490610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10490611	.	T	.	.	LowGQX	.	GT	./.
chr1	10490612	.	T	.	.	LowGQX	END=10490616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10490617	.	T	.	.	LowGQX	.	GT	./.
chr1	10490618	.	A	.	.	LowGQX	END=10490631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10490632	.	G	.	.	LowGQX	.	GT	./.
chr1	10490633	.	A	.	.	LowGQX	END=10490635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10490636	.	A	.	.	LowGQX	.	GT	./.
chr1	10490637	.	C	.	.	LowGQX	END=10490642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10490643	.	T	.	.	LowGQX	.	GT	./.
chr1	10490644	.	C	.	.	LowGQX	END=10490648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10490649	.	T	.	.	LowGQX	.	GT	./.
chr1	10490650	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10491346	.	A	.	.	LowGQX	END=10491458	GT	./.
chr1	10493897	.	A	.	.	LowGQX	END=10494024	GT	./.
chr1	10494622	.	G	.	.	LowGQX	END=10494780	GT	./.
chr1	10500388	.	T	.	.	LowGQX	END=10500487	GT	./.
chr1	10502280	.	A	.	.	LowGQX	END=10502464	GT	./.
chr1	10510129	.	A	.	.	LowGQX	END=10510381	GT	./.
chr1	10511432	.	A	.	.	LowGQX	END=10511592	GT	./.
chr1	10511593	.	C	.	.	LowGQX	END=10511631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10511632	.	A	.	.	LowGQX	.	GT	./.
chr1	10511633	.	C	.	.	LowGQX	END=10511654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10521545	.	T	.	.	LowGQX	END=10521761	GT	./.
chr1	10523089	.	G	.	.	LowGQX	END=10523268	GT	./.
chr1	10523486	.	A	.	.	LowGQX	END=10523679	GT	./.
chr1	10527245	.	A	.	.	LowGQX	END=10527391	GT	./.
chr1	10529232	.	A	.	.	LowGQX	END=10529397	GT	./.
chr1	10532378	.	A	.	.	LowGQX	END=10532517	GT	./.
chr1	10534973	.	G	.	.	PASS	END=10535012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	10535013	.	G	.	.	PASS	END=10535075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	10535076	.	T	.	.	PASS	END=10535099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	10535100	.	C	.	.	PASS	END=10535110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	10555265	.	C	.	.	PASS	END=10555348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	10555349	.	A	.	.	PASS	END=10555389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	10555390	.	A	.	.	PASS	END=10555429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:80:60
chr1	10596219	.	A	.	.	PASS	END=10596238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	10596239	.	G	.	.	PASS	END=10596282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	10596283	.	T	.	.	PASS	END=10596324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	10596325	.	C	.	.	PASS	END=10596369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	10596370	.	G	.	.	PASS	END=10596376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	10596377	.	C	.	.	PASS	END=10596387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	10596388	.	A	G	1319.27	PASS	DP=44;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=29.98;SB=-250.13	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,44:44:99:1352,105,0:60:99:1.000
chr1	10596389	.	C	.	.	PASS	END=10596403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	10596404	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:66:60
chr1	10596405	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:87:60
chr1	10659244	.	A	.	.	PASS	END=10659270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	10659271	.	G	.	.	PASS	END=10659302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	10659303	.	G	.	.	PASS	END=10659387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	10659388	.	C	.	.	PASS	END=10659414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:79:60
chr1	10659415	.	A	.	.	PASS	END=10659417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	10659418	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:71:60
chr1	10659419	.	A	.	.	PASS	END=10659451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	10659452	.	A	.	.	PASS	END=10659464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	10659465	.	T	.	.	PASS	END=10659466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:54:60
chr1	10659467	.	C	.	.	PASS	END=10659474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	10678338	.	A	.	.	PASS	END=10678366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	10678367	.	C	.	.	PASS	END=10678415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	10678416	.	A	.	.	PASS	END=10678447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	10678448	.	G	.	.	PASS	END=10678482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	10678483	.	C	.	.	PASS	END=10678518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	10678519	.	T	.	.	PASS	END=10678525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	10683025	.	A	.	.	PASS	END=10683031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	10683032	.	C	.	.	PASS	END=10683039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	10683040	.	C	.	.	PASS	END=10683046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	10683047	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:30:60
chr1	10683048	.	A	.	.	PASS	END=10683059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	10683060	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:61:60
chr1	10683061	.	T	.	.	PASS	END=10683080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	10683081	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:72:60
chr1	10683082	.	C	.	.	PASS	END=10683093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:78:60
chr1	10683094	.	A	.	.	PASS	END=10683135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	10683136	.	G	.	.	PASS	END=10683188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	10683189	.	A	.	.	PASS	END=10683221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	10683222	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:73:60
chr1	10683223	.	C	.	.	PASS	END=10683233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr1	10684346	.	A	.	.	PASS	END=10684350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	10684351	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:63:60
chr1	10684352	.	T	.	.	PASS	END=10684367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	10684368	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:61:60
chr1	10684369	.	C	.	.	PASS	END=10684403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:83:60
chr1	10684404	.	G	.	.	PASS	END=10684498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	10684499	.	C	.	.	PASS	END=10684528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	10684529	.	C	.	.	PASS	END=10684536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	10684537	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:56:60
chr1	10684538	.	C	.	.	PASS	END=10684545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	10687278	.	C	.	.	PASS	END=10687287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	10687288	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:63:60
chr1	10687289	.	C	.	.	PASS	END=10687298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	10687299	.	G	.	.	PASS	END=10687308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	10687309	.	T	.	.	PASS	END=10687357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	10687358	.	G	.	.	PASS	END=10687441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	10687442	.	C	.	.	PASS	END=10687454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	10687455	.	G	.	.	PASS	END=10687471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	10689537	.	G	.	.	PASS	END=10689588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	10689589	.	A	.	.	PASS	END=10689641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:87:60
chr1	10689642	.	A	.	.	PASS	END=10689672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	10689673	.	G	.	.	PASS	END=10689708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	10689709	.	G	.	.	PASS	END=10689775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	10689776	.	C	.	.	PASS	END=10689867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	10689868	.	A	.	.	PASS	END=10689907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	10689908	.	A	.	.	PASS	END=10689923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	10689924	.	C	T	1128.52	PASS	BaseQRankSum=-0.403;DP=110;Dels=0.00;FS=2.434;HRun=0;HaplotypeScore=19.9380;MQ=60;MQ0=0;MQRankSum=0.555;QD=10.26;ReadPosRankSum=-1.840;SB=-266.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:53,56:110:99:1159,0,1307:60:99:0.514
chr1	10689925	.	G	.	.	PASS	END=10689941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	10689942	.	G	T	741.84	PASS	BaseQRankSum=-1.425;DP=90;Dels=0.00;FS=2.862;HRun=0;HaplotypeScore=16.0976;MQ=60;MQ0=0;MQRankSum=-0.093;QD=8.24;ReadPosRankSum=-0.206;SB=-196.43	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,46:90:99:772,0,1064:60:99:0.511
chr1	10689943	.	G	.	.	PASS	END=10689971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	10689972	.	T	.	.	PASS	END=10690006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:60
chr1	10690007	.	G	.	.	PASS	END=10690047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	10690048	.	T	.	.	PASS	END=10690052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	10690053	.	C	.	.	PASS	END=10690054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	10690055	.	G	.	.	PASS	END=10690074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr1	10690075	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:54:60
chr1	10690076	.	G	.	.	PASS	END=10690084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	10690085	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:51:60
chr1	10690086	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:69:60
chr1	10690087	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:39:60
chr1	10690088	.	G	.	.	PASS	END=10690092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	10690093	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:60
chr1	10690094	.	G	.	.	PASS	END=10690095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	10698986	.	C	.	.	LowGQX	END=10699644	GT	./.
chr1	10699645	.	G	.	.	LowGQX	END=10699931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10699932	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	10699933	.	T	.	.	LowGQX	END=10699966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10699967	.	C	.	.	LowGQX	END=10700118	GT	./.
chr1	10702914	.	A	.	.	LowGQX	END=10703059	GT	./.
chr1	10703215	.	A	.	.	LowGQX	END=10703370	GT	./.
chr1	10704972	.	A	.	.	LowGQX	END=10705147	GT	./.
chr1	10706183	.	A	.	.	LowGQX	END=10706385	GT	./.
chr1	10707841	.	C	.	.	LowGQX	END=10708198	GT	./.
chr1	10709125	.	A	.	.	LowGQX	END=10709251	GT	./.
chr1	10709338	.	A	.	.	LowGQX	END=10709496	GT	./.
chr1	10710731	.	G	.	.	LowGQX	END=10710830	GT	./.
chr1	10710946	.	A	.	.	LowGQX	END=10711049	GT	./.
chr1	10711050	.	G	.	.	LowGQX	END=10711071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10711072	.	A	.	.	LowGQX	.	GT	./.
chr1	10711073	.	C	.	.	LowGQX	END=10711085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10711086	.	T	.	.	LowGQX	.	GT	./.
chr1	10711087	.	C	.	.	LowGQX	END=10711088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10711089	.	C	.	.	LowGQX	.	GT	./.
chr1	10711090	.	T	.	.	LowGQX	END=10711102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10711103	.	A	.	.	LowGQX	END=10711104	GT	./.
chr1	10711105	.	C	.	.	LowGQX	END=10711110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10711111	.	T	.	.	LowGQX	.	GT	./.
chr1	10711112	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10711113	.	G	.	.	LowGQX	.	GT	./.
chr1	10711114	.	G	.	.	LowGQX	END=10711119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10711120	.	C	.	.	LowGQX	END=10711122	GT	./.
chr1	10711123	.	C	.	.	LowGQX	END=10711129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10711130	.	C	.	.	LowGQX	.	GT	./.
chr1	10711131	.	T	.	.	LowGQX	END=10711132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10711133	.	C	.	.	LowGQX	.	GT	./.
chr1	10711134	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10711135	.	T	.	.	LowGQX	.	GT	./.
chr1	10711136	.	G	.	.	LowGQX	END=10711137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10711138	.	A	.	.	LowGQX	.	GT	./.
chr1	10711139	.	G	.	.	LowGQX	END=10711147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10711148	.	T	.	.	LowGQX	.	GT	./.
chr1	10711149	.	G	.	.	LowGQX	END=10711150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10711151	.	G	.	.	LowGQX	END=10711155	GT	./.
chr1	10711156	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10711157	.	G	.	.	LowGQX	.	GT	./.
chr1	10711158	.	C	.	.	LowGQX	END=10711161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10711162	.	A	.	.	LowGQX	.	GT	./.
chr1	10711163	.	G	.	.	LowGQX	END=10711169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10711170	.	T	.	.	LowGQX	.	GT	./.
chr1	10711171	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10711172	.	A	.	.	LowGQX	.	GT	./.
chr1	10711173	.	A	.	.	LowGQX	END=10711174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10713093	.	T	.	.	LowGQX	END=10713292	GT	./.
chr1	10713293	.	G	.	.	LowGQX	END=10713378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10713379	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	10713380	.	G	.	.	LowGQX	END=10713387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10713388	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	10713389	.	A	.	.	LowGQX	END=10713429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10713430	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	10713431	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	10713432	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	10713433	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	10713434	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	10713435	.	T	.	.	LowGQX	END=10713462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10713463	.	G	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.66;ReadPosRankSum=-0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.30:33,0,33:60:5:0.667
chr1	10713464	.	C	.	.	LowGQX	END=10713553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10713554	.	A	.	.	LowGQX	.	GT	./.
chr1	10713555	.	G	.	.	LowGQX	END=10713605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10713606	.	T	.	.	LowGQX	END=10713912	GT	./.
chr1	10713913	.	T	.	.	LowGQX	END=10713955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10713956	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	10713957	.	C	.	.	LowGQX	END=10713987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10713988	.	A	.	.	LowGQX	.	GT	./.
chr1	10713989	.	G	.	.	LowGQX	END=10714025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10714026	.	G	.	.	LowGQX	.	GT	./.
chr1	10714027	.	T	.	.	LowGQX	END=10714032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10714033	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	10714034	.	G	.	.	LowGQX	END=10714060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10714061	.	T	.	.	LowGQX	.	GT	./.
chr1	10714062	.	C	.	.	LowGQX	END=10714069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10714070	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	10714071	.	G	.	.	LowGQX	END=10714075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10714076	.	T	.	.	LowGQX	.	GT	./.
chr1	10714077	.	G	.	.	LowGQX	END=10714081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10714082	.	T	.	.	LowGQX	.	GT	./.
chr1	10714083	.	G	.	.	LowGQX	END=10714225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10714226	.	G	.	.	LowGQX	.	GT	./.
chr1	10714227	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10714228	.	T	.	.	LowGQX	.	GT	./.
chr1	10714229	.	T	.	.	LowGQX	END=10714245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10714246	.	T	.	.	LowGQX	END=10714277	GT	./.
chr1	10714474	.	A	.	.	LowGQX	END=10714503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10714504	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	10714505	.	G	.	.	LowGQX	END=10714644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10714645	.	C	.	.	LowGQX	.	GT	./.
chr1	10714646	.	C	.	.	LowGQX	END=10714650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10715704	.	A	.	.	LowGQX	END=10715872	GT	./.
chr1	10716699	.	G	.	.	LowGQX	END=10716776	GT	./.
chr1	10716777	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10716778	.	C	.	.	LowGQX	.	GT	./.
chr1	10716779	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10716780	.	G	.	.	LowGQX	END=10716781	GT	./.
chr1	10716782	.	C	.	.	LowGQX	END=10716786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10716787	.	C	.	.	LowGQX	.	GT	./.
chr1	10716788	.	G	.	.	LowGQX	END=10716789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10716790	.	G	.	.	LowGQX	.	GT	./.
chr1	10716791	.	A	.	.	LowGQX	END=10716793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10716794	.	C	.	.	LowGQX	.	GT	./.
chr1	10716795	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10716796	.	G	.	.	LowGQX	.	GT	./.
chr1	10716797	.	G	.	.	LowGQX	END=10716798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10718549	.	C	.	.	LowGQX	END=10718648	GT	./.
chr1	10719757	.	A	.	.	LowGQX	END=10719801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10719802	.	A	.	.	LowGQX	.	GT	./.
chr1	10719803	.	G	.	.	LowGQX	END=10719820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10719821	.	C	.	.	LowGQX	.	GT	./.
chr1	10719822	.	T	.	.	LowGQX	END=10719833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10719834	.	A	.	.	LowGQX	.	GT	./.
chr1	10719835	.	A	.	.	LowGQX	END=10719885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10719886	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	10719887	.	G	.	.	LowGQX	END=10719894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10719895	.	T	.	10.70	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.05:60:0
chr1	10719896	.	G	.	.	LowGQX	END=10719899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10719900	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	10719901	.	G	.	.	LowGQX	END=10719904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	10719905	.	T	.	10.70	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.05:60:0
chr1	10719906	.	G	.	.	LowGQX	END=10719910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10719911	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	10719912	.	G	.	.	LowGQX	END=10719914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	10719915	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	10719916	.	G	.	.	LowGQX	END=10719918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	10719919	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	10719920	.	G	.	.	LowGQX	END=10719950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10719951	.	T	.	.	LowGQX	.	GT	./.
chr1	10719952	.	T	.	.	LowGQX	END=10719999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10720000	.	T	.	.	LowGQX	.	GT	./.
chr1	10720001	.	C	.	.	LowGQX	END=10720030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10720031	.	G	.	.	LowGQX	END=10720290	GT	./.
chr1	10720291	.	C	.	.	LowGQX	END=10720296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10720297	.	C	.	.	LowGQX	.	GT	./.
chr1	10720298	.	C	.	.	LowGQX	END=10720300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10720301	.	G	.	.	LowGQX	.	GT	./.
chr1	10720302	.	C	.	.	LowGQX	END=10720303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10720304	.	C	.	.	LowGQX	.	GT	./.
chr1	10720305	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10720306	.	C	.	.	LowGQX	END=10720307	GT	./.
chr1	10720308	.	C	.	.	LowGQX	END=10720310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10720311	.	T	.	.	LowGQX	.	GT	./.
chr1	10720312	.	C	.	.	LowGQX	END=10720323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10720324	.	T	.	.	LowGQX	.	GT	./.
chr1	10720325	.	G	.	.	LowGQX	END=10720326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10720327	.	T	.	.	LowGQX	.	GT	./.
chr1	10720328	.	G	.	.	LowGQX	END=10720392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10720393	.	A	.	.	LowGQX	.	GT	./.
chr1	10720394	.	C	.	.	LowGQX	END=10720403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10720404	.	T	.	.	LowGQX	.	GT	./.
chr1	10720405	.	T	.	.	LowGQX	END=10720413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10720414	.	T	.	.	LowGQX	.	GT	./.
chr1	10720415	.	A	.	.	LowGQX	END=10720440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10720441	.	A	.	.	LowGQX	END=10720475	GT	./.
chr1	10720476	.	T	.	.	LowGQX	END=10720507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10720508	.	C	.	.	LowGQX	.	GT	./.
chr1	10720509	.	C	.	.	LowGQX	END=10720573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	10720574	.	C	.	.	LowGQX	.	GT	./.
chr1	10720575	.	C	.	.	LowGQX	END=10720629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10720630	.	G	.	.	LowGQX	.	GT	./.
chr1	10720631	.	G	.	.	LowGQX	END=10720633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10720634	.	T	.	.	LowGQX	END=10720675	GT	./.
chr1	10725138	.	A	.	.	LowGQX	END=10725630	GT	./.
chr1	10753840	.	C	.	.	LowGQX	END=10753883	GT	./.
chr1	10753884	.	C	.	.	LowGQX	END=10753893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10753894	.	G	.	.	LowGQX	.	GT	./.
chr1	10753895	.	T	.	.	LowGQX	END=10753897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10753898	.	A	.	.	LowGQX	.	GT	./.
chr1	10753899	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10753900	.	G	.	.	LowGQX	.	GT	./.
chr1	10753901	.	A	.	.	LowGQX	END=10753903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10753904	.	C	.	.	LowGQX	.	GT	./.
chr1	10753905	.	G	.	.	LowGQX	END=10753908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10753909	.	C	.	.	LowGQX	.	GT	./.
chr1	10753910	.	T	.	.	LowGQX	END=10753913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10753914	.	T	.	.	LowGQX	END=10753915	GT	./.
chr1	10753916	.	C	.	.	LowGQX	END=10753922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10753923	.	G	.	.	LowGQX	.	GT	./.
chr1	10753924	.	C	.	.	LowGQX	END=10753944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10753945	.	A	.	.	LowGQX	.	GT	./.
chr1	10753946	.	T	.	.	LowGQX	END=10753957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10753958	.	T	.	.	LowGQX	END=10753959	GT	./.
chr1	10753960	.	G	.	.	LowGQX	END=10753999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	10754329	.	T	.	.	LowGQX	END=10754428	GT	./.
chr1	11007718	.	G	.	.	LowGQX	END=11008888	GT	./.
chr1	11008889	.	G	.	.	LowGQX	END=11008898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11008899	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11008900	.	T	.	.	LowGQX	END=11008903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11009667	.	A	.	.	LowGQX	END=11009873	GT	./.
chr1	11014074	.	A	.	.	LowGQX	END=11014077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11014078	.	A	.	.	LowGQX	END=11014201	GT	./.
chr1	11015045	.	A	.	.	LowGQX	END=11015171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11015172	.	A	.	.	LowGQX	END=11015245	GT	./.
chr1	11017072	.	G	.	.	LowGQX	END=11017171	GT	./.
chr1	11017640	.	A	.	.	LowGQX	END=11017812	GT	./.
chr1	11018681	.	A	.	.	LowGQX	END=11018840	GT	./.
chr1	11024183	.	A	.	.	LowGQX	END=11024185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11024186	.	T	.	.	LowGQX	END=11024328	GT	./.
chr1	11026414	.	C	.	.	LowGQX	END=11026415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11026416	.	T	.	.	LowGQX	END=11026418	GT	./.
chr1	11026419	.	T	.	.	LowGQX	END=11026428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11026429	.	A	.	.	LowGQX	.	GT	./.
chr1	11026430	.	G	.	.	LowGQX	END=11026431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11026432	.	A	.	.	LowGQX	.	GT	./.
chr1	11026433	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11026434	.	G	.	.	LowGQX	.	GT	./.
chr1	11026435	.	C	.	.	LowGQX	END=11026440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11026441	.	A	.	.	LowGQX	.	GT	./.
chr1	11026442	.	T	.	.	LowGQX	END=11026447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11026448	.	T	.	.	LowGQX	END=11026449	GT	./.
chr1	11026450	.	G	.	.	LowGQX	END=11026451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11026452	.	A	.	.	LowGQX	.	GT	./.
chr1	11026453	.	A	.	.	LowGQX	END=11026460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11026461	.	T	.	.	LowGQX	.	GT	./.
chr1	11026462	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11026463	.	A	.	.	LowGQX	.	GT	./.
chr1	11026464	.	C	.	.	LowGQX	END=11026466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11026467	.	T	.	.	LowGQX	.	GT	./.
chr1	11026468	.	C	.	.	LowGQX	END=11026471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11026472	.	A	.	.	LowGQX	END=11026473	GT	./.
chr1	11026474	.	C	.	.	LowGQX	END=11026478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11026479	.	T	.	.	LowGQX	.	GT	./.
chr1	11026480	.	G	.	.	LowGQX	END=11026483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11026484	.	G	.	.	LowGQX	.	GT	./.
chr1	11026485	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11026486	.	A	.	.	LowGQX	.	GT	./.
chr1	11026487	.	G	.	.	LowGQX	END=11026491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11026492	.	C	.	.	LowGQX	END=11026539	GT	./.
chr1	11030026	.	C	.	.	LowGQX	END=11030101	GT	./.
chr1	11030102	.	A	.	.	LowGQX	END=11030105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11030106	.	T	.	.	LowGQX	.	GT	./.
chr1	11030107	.	G	.	.	LowGQX	END=11030111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11030112	.	G	.	.	LowGQX	.	GT	./.
chr1	11030113	.	C	.	.	LowGQX	END=11030119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11030120	.	C	.	.	LowGQX	.	GT	./.
chr1	11030121	.	T	.	.	LowGQX	END=11030122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11030123	.	T	.	.	LowGQX	END=11030124	GT	./.
chr1	11030125	.	T	.	.	LowGQX	END=11030143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11030144	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11030145	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11030146	.	T	.	.	LowGQX	.	GT	./.
chr1	11036212	.	C	.	.	LowGQX	END=11036313	GT	./.
chr1	11042032	.	A	.	.	LowGQX	END=11042131	GT	./.
chr1	11073734	.	G	.	.	PASS	END=11073809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:96:60
chr1	11073810	.	A	.	.	PASS	END=11073840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	11073841	.	A	.	.	PASS	END=11073909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	11073910	.	C	.	.	PASS	END=11073980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	11073981	.	C	.	.	PASS	END=11074012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	11074013	.	T	.	.	PASS	END=11074047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	11074048	.	T	.	.	PASS	END=11074068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	11074069	.	T	.	.	PASS	END=11074073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	11076850	.	A	.	.	PASS	END=11076872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	11076873	.	C	.	.	PASS	END=11076876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	11076877	.	A	.	.	PASS	END=11076886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	11076887	.	C	.	.	PASS	END=11076888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:66:60
chr1	11076889	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:45:60
chr1	11076890	.	G	.	.	PASS	END=11076909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	11076910	.	G	.	.	PASS	END=11076927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	11076928	.	A	.	.	PASS	END=11076964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	11076965	.	G	.	.	PASS	END=11077005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	11077006	.	C	.	.	PASS	END=11077110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	11077111	.	T	.	.	PASS	END=11077115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	11078739	.	G	.	.	PASS	END=11078742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	11078743	.	G	.	.	PASS	END=11078791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	11078792	.	C	.	.	PASS	END=11078862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	11078863	.	T	.	.	PASS	END=11078893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	11078894	.	T	.	.	PASS	END=11078939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	11078940	.	T	.	.	PASS	END=11078964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	11078965	.	C	.	.	PASS	END=11078981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	11080435	.	C	.	.	PASS	END=11080510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	11080511	.	G	.	.	PASS	END=11080543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	11080544	.	A	.	.	PASS	END=11080587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	11080588	.	G	.	.	PASS	END=11080591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	11080592	.	T	.	.	PASS	END=11080659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	11080660	.	T	.	.	PASS	END=11080674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	11080675	.	A	.	.	PASS	END=11080682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	11080683	.	C	.	.	PASS	END=11080686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	11080687	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:45:61
chr1	11080688	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:9:61
chr1	11080689	.	G	.	.	PASS	END=11080692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:61
chr1	11080693	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:61
chr1	11080694	.	G	.	.	PASS	END=11080695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:61
chr1	11080696	.	T	.	.	PASS	END=11080699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:61
chr1	11080700	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:61
chr1	11080701	.	C	.	.	PASS	END=11080705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:61
chr1	11080706	.	T	.	.	PASS	END=11080707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	11082130	.	A	.	.	PASS	END=11082192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	11082193	.	C	.	.	PASS	END=11082234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	11082235	.	A	.	.	PASS	END=11082273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	11082274	.	T	.	.	PASS	END=11082424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:314:99:60
chr1	11082425	.	C	.	.	PASS	END=11082643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:247:99:60
chr1	11082644	.	C	.	.	PASS	END=11082721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	11082722	.	T	.	.	PASS	END=11082742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	11082743	.	G	.	.	PASS	END=11082762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	11083228	.	A	.	.	LowGQX	END=11083230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11083231	.	C	.	.	LowGQX	END=11083327	GT	./.
chr1	11086940	.	A	.	.	PASS	END=11086977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	11086978	.	A	.	.	PASS	END=11087179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	11087180	.	G	.	.	PASS	END=11087286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr1	11087287	.	T	.	.	PASS	END=11087447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:265:99:60
chr1	11087448	.	T	.	.	PASS	END=11087523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:253:99:60
chr1	11087524	.	G	A	8296.86	PASS	DP=272;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=19.9805;MQ=60;MQ0=0;QD=30.50;SB=-4332.88	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,270:272:99:8297,629,0:60:99:1.000
chr1	11087525	.	G	.	.	PASS	END=11087614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:273:99:60
chr1	11087615	.	A	.	.	PASS	END=11087671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	11087672	.	C	.	.	PASS	END=11087682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	11087683	.	T	.	.	PASS	END=11087691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	11087692	.	T	.	.	PASS	END=11087707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	11090221	.	T	.	.	PASS	END=11090264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	11090265	.	T	.	.	PASS	END=11090307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	11090308	.	C	.	.	PASS	END=11090320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	11090803	.	A	.	.	PASS	END=11090879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	11090880	.	G	.	.	PASS	END=11090915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	11090916	.	C	A	4842.44	PASS	DP=172;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=17.1976;MQ=60;MQ0=0;QD=28.15;SB=-3080.88	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,172:172:99:4842,358,0:60:99:1.000
chr1	11090917	.	A	.	.	PASS	END=11090941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	11094875	.	A	.	.	PASS	END=11094878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	11094879	.	C	.	.	PASS	END=11094899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	11094900	.	T	.	.	PASS	END=11094954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	11094955	.	C	.	.	PASS	END=11094974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	11097748	.	A	.	.	PASS	END=11097758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	11097759	.	C	.	.	PASS	END=11097778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	11097779	.	A	.	.	PASS	END=11097869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	11097870	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:75:60
chr1	11102930	.	A	.	.	PASS	END=11102967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	11102968	.	C	.	.	PASS	END=11103037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	11103038	.	C	.	.	PASS	END=11103081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	11103394	.	A	.	.	PASS	END=11103420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr1	11103421	.	G	.	.	PASS	END=11103549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr1	11103550	.	A	.	.	PASS	END=11103569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	11103570	.	G	.	.	PASS	END=11103593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	11103594	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:143:99:60
chr1	11104894	.	G	.	.	PASS	END=11104900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	11104901	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:57:60
chr1	11104902	.	G	.	.	PASS	END=11104914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	11104915	.	C	.	.	PASS	END=11104928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	11104929	.	C	.	.	PASS	END=11104946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	11104947	.	G	.	.	PASS	END=11104970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	11104971	.	T	.	.	PASS	END=11104995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	11104996	.	G	.	.	PASS	END=11105053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	11105265	.	C	.	.	PASS	END=11105289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	11105290	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:48:60
chr1	11105291	.	T	.	.	PASS	END=11105324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	11105325	.	G	.	.	PASS	END=11105350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	11105351	.	C	.	.	PASS	END=11105369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	11105370	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr1	11105371	.	G	.	.	PASS	END=11105394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr1	11105395	.	C	.	.	PASS	END=11105410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	11105411	.	G	.	.	PASS	END=11105436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	11105437	.	G	.	.	PASS	END=11105517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	11105518	.	T	.	.	PASS	END=11105553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	11105554	.	C	.	.	PASS	END=11105591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	11105592	.	A	.	.	PASS	END=11105598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	11106557	.	T	.	.	PASS	END=11106582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	11106583	.	T	.	.	PASS	END=11106599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	11106600	.	C	.	.	PASS	END=11106610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	11106611	.	A	.	.	PASS	END=11106642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:292:99:60
chr1	11106643	.	T	.	.	PASS	END=11106758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:349:99:60
chr1	11106759	.	A	.	.	PASS	END=11106779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr1	11106780	.	C	.	.	PASS	END=11106792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	11106946	.	A	.	.	PASS	END=11107034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	11107035	.	C	.	.	PASS	END=11107165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	11107166	.	G	.	.	PASS	END=11107178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	11107213	.	G	.	.	PASS	END=11107238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	11107239	.	A	.	.	PASS	END=11107266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	11107267	.	T	.	.	PASS	END=11107300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	11107301	.	C	.	.	PASS	END=11107308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	11107309	.	T	.	.	PASS	END=11107310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	11107311	.	G	.	.	PASS	END=11107312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:71:60
chr1	11114823	.	A	.	.	LowGQX	END=11115143	GT	./.
chr1	11115796	.	C	.	.	LowGQX	END=11115985	GT	./.
chr1	11116060	.	T	.	.	LowGQX	END=11116063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116064	.	T	.	.	LowGQX	END=11116066	GT	./.
chr1	11116067	.	C	.	.	LowGQX	END=11116069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116070	.	T	.	.	LowGQX	END=11116071	GT	./.
chr1	11116072	.	G	.	.	LowGQX	END=11116073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116074	.	A	.	.	LowGQX	END=11116075	GT	./.
chr1	11116076	.	C	.	.	LowGQX	END=11116077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116078	.	G	.	.	LowGQX	END=11116079	GT	./.
chr1	11116080	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116081	.	G	.	.	LowGQX	END=11116084	GT	./.
chr1	11116085	.	C	.	.	LowGQX	END=11116086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116087	.	A	.	.	LowGQX	END=11116090	GT	./.
chr1	11116091	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116092	.	C	.	.	LowGQX	.	GT	./.
chr1	11116093	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116094	.	T	.	.	LowGQX	END=11116096	GT	./.
chr1	11116097	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116098	.	G	.	.	LowGQX	END=11116100	GT	./.
chr1	11116101	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116102	.	T	.	.	LowGQX	.	GT	./.
chr1	11116103	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116104	.	T	.	.	LowGQX	END=11116106	GT	./.
chr1	11116107	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116108	.	C	.	.	LowGQX	.	GT	./.
chr1	11116109	.	A	.	.	LowGQX	END=11116111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116112	.	A	.	.	LowGQX	END=11116113	GT	./.
chr1	11116114	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116115	.	T	.	.	LowGQX	END=11116116	GT	./.
chr1	11116117	.	G	.	.	LowGQX	END=11116118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116119	.	A	.	.	LowGQX	.	GT	./.
chr1	11116120	.	A	.	.	LowGQX	END=11116122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116123	.	G	.	.	LowGQX	.	GT	./.
chr1	11116124	.	G	.	.	LowGQX	END=11116126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116127	.	T	.	.	LowGQX	END=11116130	GT	./.
chr1	11116131	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116132	.	G	.	.	LowGQX	END=11116137	GT	./.
chr1	11116138	.	A	.	.	LowGQX	END=11116139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116140	.	T	.	.	LowGQX	END=11116141	GT	./.
chr1	11116142	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116143	.	C	.	.	LowGQX	.	GT	./.
chr1	11116144	.	G	.	.	LowGQX	END=11116145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11116146	.	C	.	.	LowGQX	END=11116159	GT	./.
chr1	11116659	.	A	.	.	LowGQX	END=11116816	GT	./.
chr1	11118854	.	C	.	.	LowGQX	END=11118892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11118893	.	G	.	.	LowGQX	END=11118953	GT	./.
chr1	11119280	.	A	.	.	LowGQX	END=11119404	GT	./.
chr1	11119811	.	G	.	.	LowGQX	END=11120002	GT	./.
chr1	11126741	.	C	.	.	LowGQX	END=11126742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11126743	.	T	.	.	LowGQX	.	GT	./.
chr1	11126744	.	C	.	.	LowGQX	END=11126747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11126748	.	T	.	.	LowGQX	END=11126751	GT	./.
chr1	11126752	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11126753	.	A	.	.	LowGQX	.	GT	./.
chr1	11126754	.	G	.	.	LowGQX	END=11126758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11126759	.	C	.	.	LowGQX	.	GT	./.
chr1	11126760	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11126761	.	C	.	.	LowGQX	.	GT	./.
chr1	11126762	.	G	.	.	LowGQX	END=11126764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11126765	.	T	.	.	LowGQX	END=11126766	GT	./.
chr1	11126767	.	T	.	.	LowGQX	END=11126776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11126777	.	A	.	.	LowGQX	END=11126778	GT	./.
chr1	11126779	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11126780	.	T	.	.	LowGQX	.	GT	./.
chr1	11126781	.	C	.	.	LowGQX	END=11126786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11126787	.	C	.	.	LowGQX	.	GT	./.
chr1	11126788	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11126789	.	A	.	.	LowGQX	.	GT	./.
chr1	11126790	.	G	.	.	LowGQX	END=11126795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11126796	.	C	.	.	LowGQX	.	GT	./.
chr1	11126797	.	C	.	.	LowGQX	END=11126800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11126801	.	A	.	.	LowGQX	.	GT	./.
chr1	11126802	.	G	.	.	LowGQX	END=11126809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11126810	.	A	.	.	LowGQX	.	GT	./.
chr1	11126811	.	G	.	.	LowGQX	END=11126815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11126816	.	T	.	.	LowGQX	.	GT	./.
chr1	11126817	.	A	.	.	LowGQX	END=11126820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11126821	.	A	.	.	LowGQX	.	GT	./.
chr1	11126822	.	A	.	.	LowGQX	END=11126829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11126830	.	T	.	.	LowGQX	.	GT	./.
chr1	11126831	.	T	.	.	LowGQX	END=11126840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11128054	.	C	.	.	LowGQX	END=11128153	GT	./.
chr1	11128683	.	C	.	.	LowGQX	END=11128782	GT	./.
chr1	11129614	.	A	.	.	LowGQX	END=11129789	GT	./.
chr1	11130944	.	A	.	.	LowGQX	END=11130956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11130957	.	C	.	.	LowGQX	.	GT	./.
chr1	11130958	.	A	.	.	LowGQX	END=11130960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11130961	.	A	.	.	LowGQX	.	GT	./.
chr1	11130962	.	C	.	.	LowGQX	END=11130963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11130964	.	T	.	.	LowGQX	.	GT	./.
chr1	11130965	.	G	.	.	LowGQX	END=11130966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11130967	.	T	.	.	LowGQX	.	GT	./.
chr1	11130968	.	G	.	.	LowGQX	END=11130978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11130979	.	A	.	.	LowGQX	.	GT	./.
chr1	11130980	.	T	.	.	LowGQX	END=11130983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11130984	.	C	.	.	LowGQX	.	GT	./.
chr1	11130985	.	T	.	.	LowGQX	END=11131003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11131004	.	A	.	.	LowGQX	.	GT	./.
chr1	11131005	.	C	.	.	LowGQX	END=11131012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11131013	.	T	.	.	LowGQX	.	GT	./.
chr1	11131014	.	T	.	.	LowGQX	END=11131016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11131017	.	C	.	.	LowGQX	END=11131043	GT	./.
chr1	11132137	.	G	.	.	LowGQX	END=11132236	GT	./.
chr1	11133979	.	A	.	.	LowGQX	END=11134078	GT	./.
chr1	11134286	.	A	.	.	LowGQX	END=11134385	GT	./.
chr1	11136897	.	A	.	.	LowGQX	END=11137007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11137417	.	T	.	.	LowGQX	END=11137710	GT	./.
chr1	11139766	.	A	.	.	LowGQX	END=11139792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11139793	.	T	.	.	LowGQX	END=11139881	GT	./.
chr1	11140532	.	A	.	.	LowGQX	END=11140631	GT	./.
chr1	11140787	.	G	.	.	LowGQX	END=11140842	GT	./.
chr1	11140843	.	G	.	.	LowGQX	END=11140971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11141137	.	A	.	.	LowGQX	END=11141297	GT	./.
chr1	11142743	.	A	.	.	LowGQX	END=11142937	GT	./.
chr1	11147503	.	A	.	.	LowGQX	END=11147620	GT	./.
chr1	11147621	.	G	.	.	LowGQX	END=11147650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11147855	.	A	.	.	LowGQX	END=11147940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11147941	.	T	.	.	LowGQX	.	GT	./.
chr1	11147942	.	G	.	.	LowGQX	END=11147958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11147959	.	T	.	.	LowGQX	.	GT	./.
chr1	11147960	.	C	.	.	LowGQX	END=11147969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11148168	.	C	.	.	LowGQX	END=11148267	GT	./.
chr1	11150539	.	C	.	.	LowGQX	END=11150727	GT	./.
chr1	11151069	.	A	.	.	LowGQX	END=11151238	GT	./.
chr1	11151548	.	A	.	.	LowGQX	END=11151656	GT	./.
chr1	11155813	.	A	.	.	LowGQX	END=11155925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11155926	.	T	.	.	LowGQX	END=11155940	GT	./.
chr1	11158075	.	A	.	.	LowGQX	END=11158215	GT	./.
chr1	11159776	.	A	.	.	LowGQX	END=11159890	GT	./.
chr1	11166996	.	C	.	.	LowGQX	END=11167136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11167137	.	T	.	.	LowGQX	END=11167181	GT	./.
chr1	11167500	.	A	.	.	LowGQX	END=11167599	GT	./.
chr1	11168236	.	A	.	.	LowGQX	END=11168345	GT	./.
chr1	11169338	.	C	.	.	LowGQX	END=11169343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11169344	.	C	.	.	LowGQX	END=11169414	GT	./.
chr1	11169415	.	A	.	.	LowGQX	END=11169437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11169697	.	T	.	.	LowGQX	END=11169796	GT	./.
chr1	11171137	.	C	.	.	LowGQX	END=11171193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11171194	.	A	.	.	LowGQX	.	GT	./.
chr1	11171195	.	C	.	.	LowGQX	END=11171232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11171233	.	A	.	.	LowGQX	.	GT	./.
chr1	11171234	.	A	.	.	LowGQX	END=11171236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11172837	.	G	.	.	LowGQX	END=11172991	GT	./.
chr1	11174373	.	A	.	.	LowGQX	END=11174374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11174375	.	T	.	.	LowGQX	END=11174512	GT	./.
chr1	11174858	.	A	.	.	LowGQX	END=11174926	GT	./.
chr1	11174927	.	C	.	.	LowGQX	END=11174953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11174954	.	A	.	.	LowGQX	.	GT	./.
chr1	11174955	.	A	.	.	LowGQX	END=11174956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11174957	.	A	.	.	LowGQX	.	GT	./.
chr1	11175440	.	A	.	.	LowGQX	END=11175539	GT	./.
chr1	11177053	.	T	.	.	LowGQX	END=11177152	GT	./.
chr1	11181301	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11181302	.	C	.	.	LowGQX	.	GT	./.
chr1	11181303	.	C	.	.	LowGQX	END=11181311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11181312	.	G	.	.	LowGQX	.	GT	./.
chr1	11181313	.	G	.	.	LowGQX	END=11181324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11181325	.	C	.	.	LowGQX	.	GT	./.
chr1	11181326	.	A	.	.	LowGQX	END=11181334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11181335	.	T	.	.	LowGQX	.	GT	./.
chr1	11181336	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11181337	.	G	.	.	LowGQX	.	GT	./.
chr1	11181338	.	C	.	.	LowGQX	END=11181368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11181369	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11181370	.	T	.	.	LowGQX	END=11181416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11181417	.	C	.	.	LowGQX	.	GT	./.
chr1	11181418	.	G	.	.	LowGQX	END=11181421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11181422	.	C	.	.	LowGQX	.	GT	./.
chr1	11181423	.	C	.	.	LowGQX	END=11181427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11182034	.	A	.	.	LowGQX	END=11182118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11182119	.	A	.	.	LowGQX	END=11182185	GT	./.
chr1	11184553	.	A	.	.	LowGQX	END=11184692	GT	./.
chr1	11186677	.	A	.	.	LowGQX	END=11186855	GT	./.
chr1	11187065	.	A	.	.	LowGQX	END=11187203	GT	./.
chr1	11187679	.	A	.	.	LowGQX	END=11187865	GT	./.
chr1	11188059	.	A	.	.	LowGQX	END=11188185	GT	./.
chr1	11188509	.	A	.	.	LowGQX	END=11188568	GT	./.
chr1	11188569	.	G	.	.	LowGQX	END=11188611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11188910	.	A	.	.	LowGQX	END=11188942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11188943	.	A	.	.	LowGQX	.	GT	./.
chr1	11188944	.	C	.	.	LowGQX	END=11188966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11188967	.	A	.	.	LowGQX	.	GT	./.
chr1	11188968	.	C	.	.	LowGQX	END=11188980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11188981	.	A	.	.	LowGQX	.	GT	./.
chr1	11188982	.	C	.	.	LowGQX	END=11189010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11189793	.	A	.	.	LowGQX	END=11189845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11189846	.	A	.	.	LowGQX	.	GT	./.
chr1	11189847	.	A	.	.	LowGQX	END=11189897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11190584	.	A	.	.	LowGQX	END=11190590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11190591	.	T	.	.	LowGQX	END=11190826	GT	./.
chr1	11190827	.	T	.	.	LowGQX	END=11190836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11193135	.	A	.	.	LowGQX	END=11193256	GT	./.
chr1	11194406	.	A	.	.	LowGQX	END=11194525	GT	./.
chr1	11199359	.	A	.	.	LowGQX	END=11199416	GT	./.
chr1	11199417	.	C	.	.	LowGQX	END=11199422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11199423	.	G	.	.	LowGQX	END=11199424	GT	./.
chr1	11199425	.	A	.	.	LowGQX	END=11199427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11199428	.	G	.	.	LowGQX	.	GT	./.
chr1	11199429	.	G	.	.	LowGQX	END=11199441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11199442	.	C	.	.	LowGQX	.	GT	./.
chr1	11199443	.	C	.	.	LowGQX	END=11199447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11199448	.	C	.	.	LowGQX	END=11199450	GT	./.
chr1	11199451	.	A	.	.	LowGQX	END=11199457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11199458	.	C	.	.	LowGQX	END=11199460	GT	./.
chr1	11199461	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11199462	.	G	.	.	LowGQX	.	GT	./.
chr1	11199463	.	G	.	.	LowGQX	END=11199470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11199471	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11199472	.	T	.	.	LowGQX	END=11199475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11199476	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11199477	.	T	.	.	LowGQX	END=11199482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11199483	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11199484	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11199485	.	G	.	.	LowGQX	.	GT	./.
chr1	11199486	.	C	.	.	LowGQX	END=11199519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11199520	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11199521	.	A	.	.	LowGQX	END=11199532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11199533	.	A	.	.	LowGQX	.	GT	./.
chr1	11199534	.	G	.	.	LowGQX	END=11199538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11199588	.	A	.	.	LowGQX	END=11199717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11204703	.	A	.	.	LowGQX	END=11204814	GT	./.
chr1	11205014	.	T	.	.	LowGQX	END=11205113	GT	./.
chr1	11206731	.	A	.	.	LowGQX	END=11206850	GT	./.
chr1	11210181	.	A	.	.	LowGQX	END=11210195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11210196	.	A	.	.	LowGQX	.	GT	./.
chr1	11210197	.	G	.	.	LowGQX	END=11210214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11210215	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	11210216	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11210217	.	C	.	.	LowGQX	.	GT	./.
chr1	11210218	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11210219	.	T	.	.	LowGQX	.	GT	./.
chr1	11210220	.	C	.	.	LowGQX	END=11210223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11210224	.	G	.	.	LowGQX	.	GT	./.
chr1	11210225	.	C	.	.	LowGQX	END=11210228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11210229	.	G	.	.	LowGQX	.	GT	./.
chr1	11210230	.	G	.	.	LowGQX	END=11210238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11210239	.	T	.	.	LowGQX	END=11210240	GT	./.
chr1	11210241	.	A	.	.	LowGQX	END=11210242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11210243	.	C	.	.	LowGQX	.	GT	./.
chr1	11210244	.	C	.	.	LowGQX	END=11210247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11210248	.	G	.	.	LowGQX	END=11210249	GT	./.
chr1	11210250	.	C	.	.	LowGQX	END=11210255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11210256	.	T	.	.	LowGQX	.	GT	./.
chr1	11210257	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11210258	.	C	.	.	LowGQX	.	GT	./.
chr1	11210259	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11210260	.	C	.	.	LowGQX	.	GT	./.
chr1	11210261	.	A	.	.	LowGQX	END=11210264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11210265	.	C	.	.	LowGQX	END=11210267	GT	./.
chr1	11210268	.	C	.	.	LowGQX	END=11210271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11210272	.	T	.	.	LowGQX	.	GT	./.
chr1	11210273	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11210274	.	G	.	.	LowGQX	.	GT	./.
chr1	11210275	.	A	.	.	LowGQX	END=11210280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11210281	.	C	.	.	LowGQX	.	GT	./.
chr1	11210282	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11210283	.	C	.	.	LowGQX	END=11210284	GT	./.
chr1	11210285	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11217207	.	A	.	.	LowGQX	END=11217350	GT	./.
chr1	11227487	.	T	.	.	LowGQX	END=11227586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11249635	.	A	.	.	LowGQX	END=11249924	GT	./.
chr1	11249925	.	G	.	.	LowGQX	END=11250014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11252325	.	A	.	.	LowGQX	END=11252429	GT	./.
chr1	11253635	.	A	.	.	LowGQX	END=11253637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11253638	.	T	.	.	LowGQX	.	GT	./.
chr1	11253639	.	G	.	.	LowGQX	END=11253742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11253743	.	T	.	.	LowGQX	.	GT	./.
chr1	11253744	.	T	.	.	LowGQX	END=11253749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11253750	.	C	.	.	LowGQX	.	GT	./.
chr1	11253751	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11253752	.	T	.	.	LowGQX	.	GT	./.
chr1	11253753	.	C	.	.	LowGQX	END=11253764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11253765	.	C	.	.	LowGQX	.	GT	./.
chr1	11253766	.	T	.	.	LowGQX	END=11253795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11253796	.	T	.	.	LowGQX	.	GT	./.
chr1	11253797	.	C	.	.	LowGQX	END=11253801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11253802	.	C	.	.	LowGQX	.	GT	./.
chr1	11253803	.	A	.	.	LowGQX	END=11253809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11253810	.	C	.	.	LowGQX	END=11253811	GT	./.
chr1	11253812	.	G	.	.	LowGQX	END=11253814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11253815	.	T	.	.	LowGQX	.	GT	./.
chr1	11253816	.	G	.	.	LowGQX	END=11253840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11254516	.	A	.	.	LowGQX	END=11254718	GT	./.
chr1	11254909	.	A	.	.	LowGQX	END=11254974	GT	./.
chr1	11254975	.	G	.	.	LowGQX	END=11255082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11259313	.	A	.	.	LowGQX	END=11259462	GT	./.
chr1	11259596	.	A	.	.	LowGQX	END=11259762	GT	./.
chr1	11264616	.	A	.	.	LowGQX	END=11264752	GT	./.
chr1	11264753	.	C	.	.	LowGQX	END=11264762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11269367	.	G	.	.	LowGQX	END=11269517	GT	./.
chr1	11270868	.	C	.	.	LowGQX	END=11270896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11270897	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11270898	.	A	.	.	LowGQX	END=11270902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11270903	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11270904	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11270905	.	T	.	.	LowGQX	.	GT	./.
chr1	11270906	.	G	.	.	LowGQX	END=11270907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11270908	.	T	.	.	LowGQX	END=11270909	GT	./.
chr1	11270910	.	A	.	.	LowGQX	END=11270917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11270918	.	G	.	.	LowGQX	.	GT	./.
chr1	11270919	.	G	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	11270920	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11270921	.	G	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	11270922	.	T	.	.	LowGQX	END=11270923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11270924	.	G	.	.	LowGQX	END=11270925	GT	./.
chr1	11270926	.	A	.	.	LowGQX	END=11270927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11270928	.	C	.	.	LowGQX	END=11270930	GT	./.
chr1	11270931	.	A	.	.	LowGQX	END=11270937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11270938	.	T	.	.	LowGQX	.	GT	./.
chr1	11270939	.	T	.	.	LowGQX	END=11270941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11270942	.	C	.	.	LowGQX	END=11270943	GT	./.
chr1	11270944	.	A	.	.	LowGQX	END=11270945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11270946	.	T	.	.	LowGQX	.	GT	./.
chr1	11270947	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11270948	.	G	.	.	LowGQX	.	GT	./.
chr1	11270949	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11270950	.	A	.	.	LowGQX	END=11270951	GT	./.
chr1	11270952	.	G	.	.	LowGQX	END=11270959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11270960	.	G	.	.	LowGQX	END=11270961	GT	./.
chr1	11270962	.	T	.	.	LowGQX	END=11270967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11272367	.	A	.	.	LowGQX	END=11272443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11272444	.	T	.	.	LowGQX	END=11272533	GT	./.
chr1	11272851	.	A	.	.	LowGQX	END=11272883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11272884	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	11272885	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11272886	.	A	.	.	LowGQX	.	GT	./.
chr1	11272887	.	A	.	.	LowGQX	END=11272967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11273454	.	A	.	.	LowGQX	END=11273473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11273474	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11273475	.	C	.	.	LowGQX	END=11273534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11273535	.	A	.	.	LowGQX	END=11273543	GT	./.
chr1	11273544	.	T	.	.	LowGQX	END=11273548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11273549	.	C	.	.	LowGQX	.	GT	./.
chr1	11273550	.	C	.	.	LowGQX	END=11273554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11273555	.	A	.	.	LowGQX	.	GT	./.
chr1	11273556	.	G	.	.	LowGQX	END=11273559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11273560	.	C	.	.	LowGQX	END=11273561	GT	./.
chr1	11273562	.	A	.	.	LowGQX	END=11273566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11273567	.	T	.	.	LowGQX	.	GT	./.
chr1	11273568	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11273569	.	G	.	.	LowGQX	END=11273570	GT	./.
chr1	11273571	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11273572	.	C	.	.	LowGQX	.	GT	./.
chr1	11273573	.	A	.	.	LowGQX	END=11273574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11273575	.	T	.	.	LowGQX	.	GT	./.
chr1	11273576	.	G	.	.	LowGQX	END=11273614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11273615	.	C	.	.	LowGQX	.	GT	./.
chr1	11273616	.	C	.	.	LowGQX	END=11273625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11276199	.	A	.	.	LowGQX	END=11276298	GT	./.
chr1	11288723	.	A	.	.	LowGQX	END=11288934	GT	./.
chr1	11288935	.	G	.	.	LowGQX	END=11288977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11290980	.	A	.	.	LowGQX	END=11291113	GT	./.
chr1	11291355	.	A	.	.	LowGQX	END=11291493	GT	./.
chr1	11292490	.	C	.	.	LowGQX	END=11292556	GT	./.
chr1	11292557	.	A	.	.	LowGQX	END=11292589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11293450	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11293451	.	T	.	.	LowGQX	END=11293453	GT	./.
chr1	11293454	.	C	.	.	LowGQX	END=11293455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11293456	.	T	.	.	LowGQX	.	GT	./.
chr1	11293457	.	G	.	.	LowGQX	END=11293461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11293462	.	A	.	.	LowGQX	.	GT	./.
chr1	11293463	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11293464	.	T	.	.	LowGQX	.	GT	./.
chr1	11293465	.	T	.	.	LowGQX	END=11293466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11293467	.	T	.	.	LowGQX	.	GT	./.
chr1	11293468	.	C	.	.	LowGQX	END=11293469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11293470	.	T	.	.	LowGQX	END=11293472	GT	./.
chr1	11293473	.	T	.	.	LowGQX	END=11293481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11293482	.	G	.	.	LowGQX	.	GT	./.
chr1	11293483	.	A	.	.	LowGQX	END=11293499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11293500	.	T	.	.	LowGQX	END=11293501	GT	./.
chr1	11293502	.	G	.	.	LowGQX	END=11293503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11293504	.	T	.	.	LowGQX	END=11293506	GT	./.
chr1	11293507	.	G	.	.	LowGQX	END=11293509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11293510	.	T	.	.	LowGQX	.	GT	./.
chr1	11293511	.	C	.	.	LowGQX	END=11293515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11293516	.	T	.	.	LowGQX	.	GT	./.
chr1	11293517	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11293518	.	T	.	.	LowGQX	.	GT	./.
chr1	11293519	.	G	.	.	LowGQX	END=11293521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11293522	.	T	.	.	LowGQX	END=11293549	GT	./.
chr1	11294148	.	A	.	.	LowGQX	END=11294158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11294159	.	A	.	.	LowGQX	.	GT	./.
chr1	11294160	.	C	.	.	LowGQX	END=11294245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11294246	.	G	.	.	LowGQX	.	GT	./.
chr1	11294247	.	A	.	.	LowGQX	END=11294264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11294265	.	T	.	.	LowGQX	.	GT	./.
chr1	11294266	.	G	.	.	LowGQX	END=11294273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11294274	.	T	.	.	LowGQX	.	GT	./.
chr1	11294275	.	C	.	.	LowGQX	END=11294324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11297898	.	A	.	.	LowGQX	END=11298107	GT	./.
chr1	11298457	.	A	.	.	LowGQX	END=11298546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11298547	.	A	.	.	LowGQX	END=11298676	GT	./.
chr1	11300358	.	A	.	.	LowGQX	END=11300606	GT	./.
chr1	11301608	.	A	.	.	LowGQX	END=11301740	GT	./.
chr1	11303159	.	A	.	.	LowGQX	END=11303359	GT	./.
chr1	11307680	.	A	.	.	LowGQX	END=11307792	GT	./.
chr1	11307874	.	A	.	.	LowGQX	END=11308153	GT	./.
chr1	11313894	.	A	.	.	LowGQX	.	GT	./.
chr1	11313895	.	C	.	.	LowGQX	END=11314003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11314004	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11314005	.	C	.	.	LowGQX	END=11314012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11314013	.	T	.	.	LowGQX	.	GT	./.
chr1	11314014	.	G	.	.	LowGQX	END=11314032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11316047	.	A	.	.	LowGQX	END=11316055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11316056	.	C	.	.	LowGQX	END=11316127	GT	./.
chr1	11316128	.	G	.	.	LowGQX	END=11316229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11316230	.	A	.	.	LowGQX	END=11316251	GT	./.
chr1	11316988	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11316989	.	C	.	.	LowGQX	END=11316990	GT	./.
chr1	11316991	.	G	.	.	LowGQX	END=11316995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11316996	.	A	.	.	LowGQX	.	GT	./.
chr1	11316997	.	T	.	.	LowGQX	END=11317001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317002	.	C	.	.	LowGQX	.	GT	./.
chr1	11317003	.	C	.	.	LowGQX	END=11317007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317008	.	C	.	.	LowGQX	END=11317011	GT	./.
chr1	11317012	.	T	.	.	LowGQX	END=11317023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317024	.	C	.	.	LowGQX	.	GT	./.
chr1	11317025	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317026	.	C	.	.	LowGQX	.	GT	./.
chr1	11317027	.	A	.	.	LowGQX	END=11317031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317032	.	T	.	.	LowGQX	.	GT	./.
chr1	11317033	.	T	.	.	LowGQX	END=11317036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317037	.	G	.	.	LowGQX	.	GT	./.
chr1	11317038	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317039	.	G	.	.	LowGQX	.	GT	./.
chr1	11317040	.	C	.	.	LowGQX	END=11317042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317043	.	G	.	.	LowGQX	END=11317045	GT	./.
chr1	11317046	.	T	.	.	LowGQX	END=11317049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317050	.	C	.	.	LowGQX	END=11317051	GT	./.
chr1	11317052	.	C	.	.	LowGQX	END=11317057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317058	.	C	.	.	LowGQX	.	GT	./.
chr1	11317059	.	C	.	.	LowGQX	END=11317063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317064	.	A	.	.	LowGQX	.	GT	./.
chr1	11317065	.	C	.	.	LowGQX	END=11317086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317087	.	G	.	.	LowGQX	.	GT	./.
chr1	11317088	.	C	.	.	LowGQX	END=11317092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11317093	.	G	.	.	LowGQX	.	GT	./.
chr1	11317094	.	C	.	.	LowGQX	END=11317101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11317102	.	C	.	.	LowGQX	.	GT	./.
chr1	11317103	.	C	.	.	LowGQX	END=11317117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11317118	.	C	.	.	LowGQX	.	GT	./.
chr1	11317119	.	C	.	.	LowGQX	END=11317124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11317125	.	C	.	.	LowGQX	.	GT	./.
chr1	11317126	.	A	.	.	LowGQX	END=11317131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317132	.	A	.	.	LowGQX	.	GT	./.
chr1	11317133	.	C	.	.	LowGQX	END=11317144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317145	.	A	.	.	LowGQX	.	GT	./.
chr1	11317146	.	G	.	.	LowGQX	END=11317147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317148	.	G	.	.	LowGQX	.	GT	./.
chr1	11317149	.	G	.	.	LowGQX	END=11317150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317151	.	G	.	.	LowGQX	.	GT	./.
chr1	11317152	.	G	.	.	LowGQX	END=11317156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317157	.	T	.	.	LowGQX	.	GT	./.
chr1	11317158	.	C	.	.	LowGQX	END=11317159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317160	.	G	.	.	LowGQX	.	GT	./.
chr1	11317161	.	A	.	.	LowGQX	END=11317162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317163	.	G	.	.	LowGQX	.	GT	./.
chr1	11317164	.	A	.	.	LowGQX	END=11317166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317167	.	G	.	.	LowGQX	.	GT	./.
chr1	11317168	.	T	.	.	LowGQX	END=11317171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317172	.	C	.	.	LowGQX	END=11317173	GT	./.
chr1	11317174	.	A	.	.	LowGQX	END=11317177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317178	.	T	.	.	LowGQX	.	GT	./.
chr1	11317179	.	G	.	.	LowGQX	END=11317181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317182	.	A	.	.	LowGQX	.	GT	./.
chr1	11317183	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317184	.	T	.	.	LowGQX	.	GT	./.
chr1	11317185	.	T	.	.	LowGQX	END=11317186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317187	.	G	.	.	LowGQX	.	GT	./.
chr1	11317188	.	G	.	.	LowGQX	END=11317189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317190	.	T	.	.	LowGQX	.	GT	./.
chr1	11317191	.	G	.	.	LowGQX	END=11317192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317193	.	C	.	.	LowGQX	.	GT	./.
chr1	11317194	.	A	.	.	LowGQX	END=11317196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317197	.	C	.	.	LowGQX	.	GT	./.
chr1	11317198	.	C	.	.	LowGQX	END=11317199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317200	.	A	.	.	LowGQX	.	GT	./.
chr1	11317201	.	C	.	.	LowGQX	END=11317210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317211	.	C	.	.	LowGQX	.	GT	./.
chr1	11317212	.	T	.	.	LowGQX	END=11317222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11317223	.	C	.	.	LowGQX	.	GT	./.
chr1	11317224	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11318540	.	A	.	.	LowGQX	END=11318652	GT	./.
chr1	11319282	.	C	.	.	LowGQX	END=11319468	GT	./.
chr1	11333538	.	T	.	.	LowGQX	END=11333542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	11333543	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	11333544	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	11333545	.	G	.	.	LowGQX	END=11333552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	11333553	.	C	.	.	LowGQX	END=11333556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	11333557	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	11333558	.	T	.	.	LowGQX	END=11333564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	11333565	.	T	.	.	LowGQX	END=11333566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	11333567	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	11333568	.	C	.	.	LowGQX	END=11333570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	11333571	.	C	.	.	LowGQX	END=11333572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	11333573	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	11333574	.	C	.	.	LowGQX	END=11333580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	11333581	.	G	.	.	LowGQX	END=11333584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	11333585	.	T	.	.	LowGQX	END=11333586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	11333587	.	C	.	.	LowGQX	END=11333589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	11333590	.	T	.	.	LowGQX	END=11333593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	11333594	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	11333595	.	G	.	.	LowGQX	END=11333597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	11333598	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	11333599	.	C	.	.	LowGQX	END=11333600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	11333601	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	11333602	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	11333603	.	G	.	.	PASS	END=11333649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	11333650	.	C	.	.	PASS	END=11333652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	11333653	.	G	.	.	PASS	END=11333661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	11333662	.	A	.	.	PASS	END=11333666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	11333667	.	C	.	.	PASS	END=11333685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	11333686	.	A	.	.	PASS	END=11333698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	11333699	.	C	.	.	PASS	END=11333717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	11333718	.	C	.	.	PASS	END=11333771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	11333772	.	C	.	.	PASS	END=11333788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	11333789	.	G	.	.	PASS	END=11333820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	11333821	.	T	.	.	PASS	END=11333858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	11333859	.	G	.	.	PASS	END=11333969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	11333970	.	C	.	.	PASS	END=11334009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	11334010	.	T	.	.	PASS	END=11334037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	11334038	.	C	.	.	PASS	END=11334080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	11334081	.	T	.	.	PASS	END=11334092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	11334093	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:75:60
chr1	11334094	.	C	.	.	PASS	END=11334128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	11334129	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:48:60
chr1	11334130	.	C	.	.	PASS	END=11334135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	11334136	.	T	.	.	PASS	END=11334140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	11334141	.	G	.	.	PASS	END=11334146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	11334147	.	G	.	.	PASS	END=11334154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	11334155	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	11334156	.	C	.	.	PASS	END=11334158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	11334159	.	G	.	.	LowGQX	END=11334163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	11334164	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:1:60
chr1	11334165	.	T	.	.	LowGQX	END=11334168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	11345650	.	T	.	.	LowGQX	END=11345665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	11345666	.	G	.	.	LowGQX	END=11345677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	11345678	.	C	.	4.57	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.01:60:0
chr1	11345679	.	T	.	.	LowGQX	END=11345681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	11345682	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	11345683	.	T	.	.	LowGQX	END=11345701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	11345702	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	11345703	.	A	.	.	LowGQX	END=11345720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	11345721	.	G	.	.	LowGQX	END=11345734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	11345735	.	C	.	7.21	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:0.02:60:0
chr1	11345736	.	A	.	.	LowGQX	END=11345737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	11345738	.	C	.	.	LowGQX	END=11345748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	11345749	.	C	.	.	LowGQX	END=11345755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	11345756	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	11345757	.	C	.	.	LowGQX	END=11345770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	11345771	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:1:60
chr1	11345772	.	T	.	.	LowGQX	END=11345776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	11345777	.	C	.	.	LowGQX	END=11345783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	11345784	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	11345785	.	T	.	.	LowGQX	END=11345792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	11345793	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	11345794	.	G	.	.	LowGQX	END=11345797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	11345798	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	11345799	.	C	.	.	LowGQX	END=11345801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	11345802	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	11345803	.	C	.	.	LowGQX	END=11345804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	11345805	.	A	.	.	PASS	END=11345806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	11345807	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	11345808	.	T	.	.	PASS	END=11345810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	11345811	.	C	.	.	LowGQX	END=11345813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	11345814	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	11345815	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	11345816	.	G	.	.	PASS	END=11345838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	11345839	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	11345840	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chr1	11345841	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	11345842	.	G	.	.	PASS	END=11345863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	11345864	.	C	.	.	PASS	END=11345876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	11345877	.	G	.	.	PASS	END=11345896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	11345897	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:36:60
chr1	11345898	.	G	.	.	PASS	END=11345909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	11345910	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:30:60
chr1	11345911	.	C	.	.	PASS	END=11345928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	11345929	.	G	.	.	PASS	END=11345940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:39:60
chr1	11345941	.	C	.	.	PASS	END=11345951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	11345952	.	T	.	.	PASS	END=11345956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	11345957	.	C	.	.	PASS	END=11345959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:60
chr1	11345960	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chr1	11345961	.	C	.	.	PASS	END=11345964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr1	11345965	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:39:60
chr1	11345966	.	C	.	.	PASS	END=11346014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	11346015	.	A	.	.	PASS	END=11346020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	11346021	.	G	.	.	PASS	END=11346030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	11346031	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	11346032	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:24:60
chr1	11346033	.	C	.	.	PASS	END=11346046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	11346047	.	G	.	.	PASS	END=11346048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	11346049	.	C	.	.	PASS	END=11346069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	11346070	.	T	.	.	PASS	END=11346085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	11346086	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:2:60
chr1	11346087	.	A	.	.	PASS	END=11346100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	11346101	.	G	.	.	PASS	END=11346104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	11346105	.	A	.	.	LowGQX	END=11346110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	11346111	.	A	.	.	LowGQX	END=11346113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	11346114	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr1	11346115	.	T	.	.	LowGQX	END=11346117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	11346118	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	11346119	.	C	.	.	LowGQX	END=11346121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	11346122	.	C	.	.	LowGQX	END=11346127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	11346128	.	G	.	42.03	LowGQX	DP=7;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:7:12.04:60:12
chr1	11346129	.	G	.	.	LowGQX	END=11346137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	11346138	.	T	.	.	LowGQX	END=11346139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	11346140	.	T	.	.	LowGQX	END=11346142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	11346143	.	C	.	42.03	LowGQX	DP=7;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:7:12.04:60:12
chr1	11346144	.	T	.	.	LowGQX	END=11346145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	11346146	.	T	.	.	LowGQX	END=11346149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	11346150	.	A	.	.	LowGQX	END=11346151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	11346152	.	C	.	.	LowGQX	END=11346154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	11346155	.	T	.	.	LowGQX	END=11346157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	11346158	.	G	.	.	LowGQX	END=11346159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	11346160	.	C	.	.	LowGQX	END=11346161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:60
chr1	11346162	.	C	.	.	LowGQX	END=11346170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	11346171	.	A	.	.	LowGQX	END=11346172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	11346173	.	T	.	.	LowGQX	END=11346174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:60
chr1	11346175	.	T	.	.	LowGQX	END=11346179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	11346180	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	11346181	.	A	.	.	LowGQX	END=11346187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	11346188	.	A	.	.	LowGQX	END=11346191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	11346192	.	G	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	11346193	.	A	.	.	LowGQX	END=11346200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	11346201	.	C	.	.	LowGQX	END=11346202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	11346203	.	C	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	11346204	.	C	.	.	LowGQX	END=11346205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	11346206	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	11346207	.	C	.	.	LowGQX	END=11346210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	11346211	.	G	.	.	LowGQX	END=11346216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	11346217	.	T	.	.	LowGQX	.	GT	./.
chr1	11346218	.	C	.	.	LowGQX	END=11346219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	11346220	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	11346221	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	11346222	.	C	.	10.70	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.05:60:0
chr1	11346223	.	T	.	.	LowGQX	END=11346225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	11346226	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	11346227	.	T	.	.	LowGQX	END=11346233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	11346234	.	A	.	.	LowGQX	END=11346239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11354885	.	C	.	.	LowGQX	END=11354984	GT	./.
chr1	11561037	.	T	.	.	LowGQX	END=11561102	GT	./.
chr1	11561103	.	G	.	.	LowGQX	END=11561280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11561281	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	11561282	.	T	.	.	LowGQX	END=11561311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11561312	.	T	.	.	LowGQX	END=11561874	GT	./.
chr1	11561875	.	G	.	.	LowGQX	END=11561880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11561881	.	A	.	.	LowGQX	.	GT	./.
chr1	11561882	.	T	.	.	LowGQX	END=11562010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11562011	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	11562012	.	G	.	.	LowGQX	END=11562133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	11562134	.	C	A	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.66;ReadPosRankSum=-0.736;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr1	11562135	.	G	.	.	LowGQX	END=11562147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	11562733	.	A	.	.	LowGQX	END=11562956	GT	./.
chr1	11574445	.	A	.	.	LowGQX	END=11574457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11574458	.	T	.	.	LowGQX	.	GT	./.
chr1	11574459	.	T	.	.	LowGQX	END=11574460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11574461	.	T	.	.	LowGQX	END=11574462	GT	./.
chr1	11574463	.	T	.	.	LowGQX	END=11574471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11574472	.	A	.	.	LowGQX	.	GT	./.
chr1	11574473	.	C	.	.	LowGQX	END=11574483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11574484	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11574485	.	A	.	.	LowGQX	END=11574524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11574525	.	G	.	.	LowGQX	.	GT	./.
chr1	11574526	.	G	.	.	LowGQX	END=11574553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11574554	.	C	.	.	LowGQX	.	GT	./.
chr1	11574555	.	C	.	.	LowGQX	END=11574566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11574567	.	C	.	.	LowGQX	.	GT	./.
chr1	11574568	.	C	.	.	LowGQX	END=11574574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11574575	.	C	.	.	LowGQX	.	GT	./.
chr1	11574576	.	C	.	.	LowGQX	END=11574577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11574578	.	G	.	.	LowGQX	.	GT	./.
chr1	11574579	.	C	.	.	LowGQX	END=11574581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11574582	.	A	.	.	LowGQX	END=11574584	GT	./.
chr1	11574585	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11575393	.	C	.	.	LowGQX	END=11575562	GT	./.
chr1	11576056	.	A	.	.	LowGQX	END=11576220	GT	./.
chr1	11577518	.	A	.	.	LowGQX	END=11577661	GT	./.
chr1	11579410	.	A	.	.	LowGQX	END=11579562	GT	./.
chr1	11579774	.	A	.	.	LowGQX	END=11579803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11579804	.	G	.	.	LowGQX	.	GT	./.
chr1	11579805	.	G	.	.	LowGQX	END=11579833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11579834	.	A	.	.	LowGQX	.	GT	./.
chr1	11579835	.	G	.	.	LowGQX	END=11579836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11579837	.	C	.	.	LowGQX	.	GT	./.
chr1	11579838	.	T	.	.	LowGQX	END=11579840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11579841	.	A	.	.	LowGQX	END=11579842	GT	./.
chr1	11579843	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11579844	.	A	.	.	LowGQX	.	GT	./.
chr1	11579845	.	C	.	.	LowGQX	END=11579864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11579865	.	A	.	.	LowGQX	.	GT	./.
chr1	11579866	.	T	.	.	LowGQX	END=11579871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11579872	.	A	.	.	LowGQX	.	GT	./.
chr1	11579873	.	G	.	.	LowGQX	END=11579889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11579890	.	A	.	.	LowGQX	END=11579892	GT	./.
chr1	11579893	.	A	.	.	LowGQX	END=11579900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11579901	.	C	.	.	LowGQX	.	GT	./.
chr1	11579902	.	T	.	.	LowGQX	END=11579903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11579904	.	T	.	.	LowGQX	.	GT	./.
chr1	11579905	.	G	.	.	LowGQX	END=11579907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11579908	.	C	.	.	LowGQX	END=11579909	GT	./.
chr1	11579910	.	G	.	.	LowGQX	END=11579913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11579914	.	T	.	.	LowGQX	.	GT	./.
chr1	11579915	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11579916	.	A	.	.	LowGQX	END=11579939	GT	./.
chr1	11580742	.	A	.	.	LowGQX	END=11580752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11580753	.	T	.	.	LowGQX	.	GT	./.
chr1	11580754	.	C	.	.	LowGQX	END=11580757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11580758	.	A	.	.	LowGQX	.	GT	./.
chr1	11580759	.	T	.	.	LowGQX	END=11580798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11580799	.	C	.	.	LowGQX	.	GT	./.
chr1	11580800	.	G	.	.	LowGQX	END=11580802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11580803	.	A	.	.	LowGQX	.	GT	./.
chr1	11580804	.	G	.	.	LowGQX	END=11580806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11580807	.	G	.	.	LowGQX	.	GT	./.
chr1	11580808	.	G	.	.	LowGQX	END=11580825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11580826	.	G	.	.	LowGQX	.	GT	./.
chr1	11580827	.	C	.	.	LowGQX	END=11580830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11580831	.	A	.	.	LowGQX	.	GT	./.
chr1	11580832	.	T	.	.	LowGQX	END=11580854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11580855	.	A	.	.	LowGQX	.	GT	./.
chr1	11580856	.	C	.	.	LowGQX	END=11580860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11580861	.	A	.	.	LowGQX	.	GT	./.
chr1	11580862	.	G	.	.	LowGQX	END=11580873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11580874	.	C	.	.	LowGQX	END=11580907	GT	./.
chr1	11583997	.	A	.	.	LowGQX	END=11584114	GT	./.
chr1	11585231	.	A	.	.	LowGQX	END=11585258	GT	./.
chr1	11585259	.	A	.	.	LowGQX	END=11585371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11586706	.	A	.	.	LowGQX	END=11586837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11586838	.	G	.	.	LowGQX	.	GT	./.
chr1	11586839	.	C	.	.	LowGQX	END=11586862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11586863	.	C	.	.	LowGQX	.	GT	./.
chr1	11586864	.	G	.	.	LowGQX	END=11586866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11586867	.	G	.	.	LowGQX	.	GT	./.
chr1	11586868	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11586869	.	C	.	.	LowGQX	.	GT	./.
chr1	11586870	.	A	.	.	LowGQX	END=11586872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11586873	.	A	.	.	LowGQX	.	GT	./.
chr1	11586874	.	A	.	.	LowGQX	END=11586888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11586889	.	C	.	.	LowGQX	.	GT	./.
chr1	11586890	.	C	.	.	LowGQX	END=11586896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11589611	.	A	.	.	LowGQX	END=11589745	GT	./.
chr1	11589842	.	A	.	.	LowGQX	END=11590018	GT	./.
chr1	11590962	.	A	.	.	LowGQX	END=11591092	GT	./.
chr1	11591580	.	T	.	.	LowGQX	END=11591688	GT	./.
chr1	11591689	.	G	.	.	LowGQX	END=11591769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11593818	.	T	.	.	LowGQX	END=11593917	GT	./.
chr1	11594415	.	C	.	.	LowGQX	END=11594599	GT	./.
chr1	11594879	.	G	.	.	LowGQX	END=11594978	GT	./.
chr1	11595066	.	A	.	.	LowGQX	END=11595183	GT	./.
chr1	11595533	.	A	.	.	LowGQX	END=11595552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11595553	.	T	.	.	LowGQX	END=11595703	GT	./.
chr1	11596379	.	A	.	.	LowGQX	END=11596471	GT	./.
chr1	11596472	.	C	.	.	LowGQX	END=11596497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11596498	.	A	.	.	LowGQX	END=11596500	GT	./.
chr1	11596501	.	G	.	.	LowGQX	END=11596520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11596521	.	C	.	.	LowGQX	.	GT	./.
chr1	11596522	.	A	.	.	LowGQX	END=11596537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11596538	.	A	.	.	LowGQX	.	GT	./.
chr1	11596539	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11596540	.	A	.	.	LowGQX	.	GT	./.
chr1	11596541	.	C	.	.	LowGQX	END=11596553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11596554	.	C	.	.	LowGQX	.	GT	./.
chr1	11596555	.	C	.	.	LowGQX	END=11596561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11596562	.	C	.	.	LowGQX	.	GT	./.
chr1	11596563	.	G	.	.	LowGQX	END=11596564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11596565	.	T	.	.	LowGQX	.	GT	./.
chr1	11596566	.	G	.	.	LowGQX	END=11596575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11596576	.	A	.	.	LowGQX	END=11596577	GT	./.
chr1	11596578	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11596579	.	G	.	.	LowGQX	.	GT	./.
chr1	11596580	.	C	.	.	LowGQX	END=11596583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11596584	.	G	.	.	LowGQX	.	GT	./.
chr1	11596585	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11596586	.	T	.	.	LowGQX	.	GT	./.
chr1	11596587	.	G	.	.	LowGQX	END=11596599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11596600	.	C	.	.	LowGQX	.	GT	./.
chr1	11596601	.	C	.	.	LowGQX	END=11596602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11596603	.	A	.	.	LowGQX	.	GT	./.
chr1	11596604	.	G	.	.	LowGQX	END=11596605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11596606	.	T	.	.	LowGQX	.	GT	./.
chr1	11596607	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11596608	.	T	.	.	LowGQX	.	GT	./.
chr1	11596609	.	T	.	.	LowGQX	END=11596614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11596615	.	C	.	.	LowGQX	.	GT	./.
chr1	11596616	.	G	.	.	LowGQX	END=11596621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11596622	.	G	.	.	LowGQX	END=11596684	GT	./.
chr1	11596685	.	G	.	.	LowGQX	END=11596745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11708749	.	G	.	.	LowGQX	END=11708752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11708753	.	A	.	.	LowGQX	END=11708754	GT	./.
chr1	11708755	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11708756	.	G	.	.	LowGQX	.	GT	./.
chr1	11708757	.	T	.	.	LowGQX	END=11708759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11708760	.	T	.	.	LowGQX	.	GT	./.
chr1	11708761	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11708762	.	C	.	.	LowGQX	.	GT	./.
chr1	11708763	.	C	.	.	LowGQX	END=11708773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11708774	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11708775	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	11708776	.	T	.	.	LowGQX	.	GT	./.
chr1	11708777	.	T	.	.	LowGQX	END=11708793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11708794	.	A	.	.	LowGQX	.	GT	./.
chr1	11708795	.	A	.	.	LowGQX	END=11708801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11708802	.	C	.	.	LowGQX	END=11708803	GT	./.
chr1	11708804	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11708805	.	C	.	.	LowGQX	.	GT	./.
chr1	11708806	.	C	.	.	LowGQX	END=11708808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11708809	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11708810	.	A	.	.	LowGQX	END=11708818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11708819	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11708820	.	C	.	.	LowGQX	END=11708822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11708823	.	C	.	.	LowGQX	.	GT	./.
chr1	11708824	.	C	.	.	LowGQX	END=11708829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11708830	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11708831	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11708832	.	C	.	.	LowGQX	END=11708833	GT	./.
chr1	11708834	.	C	.	.	LowGQX	END=11708835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11708836	.	A	.	.	LowGQX	.	GT	./.
chr1	11708837	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11708838	.	G	.	.	LowGQX	.	GT	./.
chr1	11708839	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	11708840	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11708841	.	G	.	.	LowGQX	END=11708850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11708851	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	11708852	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	11708853	.	G	.	.	LowGQX	END=11708859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	11708860	.	C	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:4:3.01:60:3
chr1	11708861	.	C	.	.	LowGQX	END=11708878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	11708879	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	11708880	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	11708881	.	G	.	.	LowGQX	END=11708887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	11709142	.	A	.	.	LowGQX	END=11709284	GT	./.
chr1	11709829	.	C	.	.	LowGQX	END=11709831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709832	.	T	.	.	LowGQX	END=11709833	GT	./.
chr1	11709834	.	A	.	.	LowGQX	END=11709835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709836	.	C	.	.	LowGQX	.	GT	./.
chr1	11709837	.	A	.	.	LowGQX	END=11709839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709840	.	C	.	.	LowGQX	END=11709841	GT	./.
chr1	11709842	.	T	.	.	LowGQX	END=11709846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709847	.	C	.	.	LowGQX	.	GT	./.
chr1	11709848	.	A	.	.	LowGQX	END=11709849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709850	.	G	.	.	LowGQX	END=11709851	GT	./.
chr1	11709852	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709853	.	G	.	.	LowGQX	END=11709854	GT	./.
chr1	11709855	.	C	.	.	LowGQX	END=11709862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709863	.	G	.	.	LowGQX	.	GT	./.
chr1	11709864	.	T	.	.	LowGQX	END=11709869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709870	.	C	.	.	LowGQX	.	GT	./.
chr1	11709871	.	C	.	.	LowGQX	END=11709872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709873	.	G	.	.	LowGQX	.	GT	./.
chr1	11709874	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709875	.	A	.	.	LowGQX	END=11709876	GT	./.
chr1	11709877	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709878	.	T	.	.	LowGQX	.	GT	./.
chr1	11709879	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709880	.	C	.	.	LowGQX	.	GT	./.
chr1	11709881	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709882	.	C	.	.	LowGQX	.	GT	./.
chr1	11709883	.	C	.	.	LowGQX	END=11709884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709885	.	A	.	.	LowGQX	.	GT	./.
chr1	11709886	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709887	.	T	.	.	LowGQX	.	GT	./.
chr1	11709888	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709889	.	G	.	.	LowGQX	END=11709892	GT	./.
chr1	11709893	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709894	.	C	.	.	LowGQX	.	GT	./.
chr1	11709895	.	A	.	.	LowGQX	END=11709897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709898	.	C	.	.	LowGQX	END=11709900	GT	./.
chr1	11709901	.	C	.	.	LowGQX	END=11709903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709904	.	G	.	.	LowGQX	.	GT	./.
chr1	11709905	.	T	.	.	LowGQX	END=11709908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709909	.	T	.	.	LowGQX	END=11709910	GT	./.
chr1	11709911	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709912	.	C	.	.	LowGQX	END=11709915	GT	./.
chr1	11709916	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709917	.	G	.	.	LowGQX	END=11709919	GT	./.
chr1	11709920	.	T	.	.	LowGQX	END=11709921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709922	.	G	.	.	LowGQX	.	GT	./.
chr1	11709923	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709924	.	G	.	.	LowGQX	.	GT	./.
chr1	11709925	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709926	.	C	.	.	LowGQX	END=11709930	GT	./.
chr1	11709931	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	11709932	.	C	.	.	LowGQX	END=11709933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709934	.	G	.	.	LowGQX	END=11709937	GT	./.
chr1	11709938	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11709939	.	A	.	.	LowGQX	.	GT	./.
chr1	11709940	.	A	.	.	LowGQX	END=11709946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11710000	.	A	.	.	LowGQX	END=11710005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11710006	.	A	.	.	LowGQX	.	GT	./.
chr1	11710007	.	G	.	.	LowGQX	END=11710022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11710023	.	T	.	.	LowGQX	.	GT	./.
chr1	11710024	.	T	.	.	LowGQX	END=11710037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11710038	.	T	.	.	LowGQX	.	GT	./.
chr1	11710039	.	C	.	.	LowGQX	END=11710040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11710041	.	T	.	.	LowGQX	.	GT	./.
chr1	11710042	.	G	.	.	LowGQX	END=11710044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11710045	.	T	.	.	LowGQX	.	GT	./.
chr1	11710046	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11710047	.	A	.	.	LowGQX	.	GT	./.
chr1	11710048	.	A	.	.	LowGQX	END=11710052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11710053	.	A	.	.	LowGQX	.	GT	./.
chr1	11710054	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11710055	.	C	.	.	LowGQX	.	GT	./.
chr1	11710056	.	C	.	.	LowGQX	END=11710063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11710064	.	T	.	.	LowGQX	.	GT	./.
chr1	11710065	.	C	.	.	LowGQX	END=11710069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11710070	.	C	.	.	LowGQX	.	GT	./.
chr1	11710071	.	A	.	.	LowGQX	END=11710079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11710080	.	A	.	.	LowGQX	END=11710081	GT	./.
chr1	11710082	.	C	.	.	LowGQX	END=11710084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11710085	.	C	.	.	LowGQX	.	GT	./.
chr1	11710086	.	C	.	.	LowGQX	END=11710091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11710092	.	T	.	.	LowGQX	END=11710133	GT	./.
chr1	11710510	.	G	.	.	LowGQX	END=11710899	GT	./.
chr1	11714277	.	C	.	.	LowGQX	END=11714436	GT	./.
chr1	11715891	.	C	.	.	LowGQX	END=11716159	GT	./.
chr1	11718272	.	A	.	.	LowGQX	END=11718386	GT	./.
chr1	11718387	.	C	.	.	LowGQX	END=11718394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718395	.	C	.	.	LowGQX	.	GT	./.
chr1	11718396	.	A	.	.	LowGQX	END=11718398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718399	.	G	.	.	LowGQX	.	GT	./.
chr1	11718400	.	G	.	.	LowGQX	END=11718402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718403	.	G	.	.	LowGQX	.	GT	./.
chr1	11718404	.	G	.	.	LowGQX	END=11718408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718409	.	C	.	.	LowGQX	.	GT	./.
chr1	11718410	.	C	.	.	LowGQX	END=11718417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718418	.	C	.	.	LowGQX	END=11718419	GT	./.
chr1	11718420	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718421	.	G	.	.	LowGQX	.	GT	./.
chr1	11718422	.	G	.	.	LowGQX	END=11718435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718436	.	C	.	.	LowGQX	END=11718437	GT	./.
chr1	11718438	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718439	.	T	.	.	LowGQX	.	GT	./.
chr1	11718440	.	A	.	.	LowGQX	END=11718445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718446	.	T	.	.	LowGQX	.	GT	./.
chr1	11718447	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718448	.	T	.	.	LowGQX	END=11718450	GT	./.
chr1	11718451	.	G	.	.	LowGQX	END=11718453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718454	.	A	.	.	LowGQX	END=11718455	GT	./.
chr1	11718456	.	A	.	.	LowGQX	END=11718459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718460	.	G	.	.	LowGQX	.	GT	./.
chr1	11718461	.	G	.	.	LowGQX	END=11718462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718463	.	G	.	.	LowGQX	.	GT	./.
chr1	11718464	.	A	.	.	LowGQX	END=11718467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718468	.	G	.	.	LowGQX	.	GT	./.
chr1	11718469	.	G	.	.	LowGQX	END=11718470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718471	.	G	.	.	LowGQX	.	GT	./.
chr1	11718472	.	T	.	.	LowGQX	END=11718474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718475	.	G	.	.	LowGQX	.	GT	./.
chr1	11718476	.	G	.	.	LowGQX	END=11718479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718480	.	A	.	.	LowGQX	END=11718481	GT	./.
chr1	11718482	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718483	.	C	.	.	LowGQX	.	GT	./.
chr1	11718484	.	C	.	.	LowGQX	END=11718487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718488	.	T	.	.	LowGQX	END=11718489	GT	./.
chr1	11718490	.	A	.	.	LowGQX	END=11718491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718492	.	T	.	.	LowGQX	.	GT	./.
chr1	11718493	.	T	.	.	LowGQX	END=11718497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718498	.	C	.	.	LowGQX	END=11718499	GT	./.
chr1	11718500	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718588	.	A	.	.	LowGQX	.	GT	./.
chr1	11718589	.	G	.	.	LowGQX	END=11718602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718603	.	T	.	.	LowGQX	END=11718605	GT	./.
chr1	11718606	.	C	.	.	LowGQX	END=11718608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718609	.	G	.	.	LowGQX	.	GT	./.
chr1	11718610	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718611	.	G	.	.	LowGQX	.	GT	./.
chr1	11718612	.	G	.	.	LowGQX	END=11718613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718614	.	G	.	.	LowGQX	END=11718615	GT	./.
chr1	11718616	.	A	.	.	LowGQX	END=11718622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718623	.	G	.	.	LowGQX	.	GT	./.
chr1	11718624	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718625	.	C	.	.	LowGQX	.	GT	./.
chr1	11718626	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718627	.	G	.	.	LowGQX	END=11718630	GT	./.
chr1	11718631	.	G	.	.	LowGQX	END=11718640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718641	.	G	.	.	LowGQX	END=11718643	GT	./.
chr1	11718644	.	G	.	.	LowGQX	END=11718649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718650	.	G	.	.	LowGQX	.	GT	./.
chr1	11718651	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718652	.	A	.	.	LowGQX	.	GT	./.
chr1	11718653	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718654	.	A	.	.	LowGQX	END=11718655	GT	./.
chr1	11718656	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718657	.	A	.	.	LowGQX	.	GT	./.
chr1	11718658	.	C	.	.	LowGQX	END=11718660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718661	.	G	.	.	LowGQX	END=11718662	GT	./.
chr1	11718663	.	C	.	.	LowGQX	END=11718668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718669	.	A	.	.	LowGQX	.	GT	./.
chr1	11718670	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718671	.	C	.	.	LowGQX	.	GT	./.
chr1	11718672	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718673	.	A	.	.	LowGQX	.	GT	./.
chr1	11718674	.	G	.	.	LowGQX	END=11718681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718682	.	A	.	.	LowGQX	.	GT	./.
chr1	11718683	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718684	.	T	.	.	LowGQX	.	GT	./.
chr1	11718685	.	G	.	.	LowGQX	END=11718687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11718791	.	A	.	.	LowGQX	END=11718930	GT	./.
chr1	11721185	.	A	.	.	LowGQX	END=11721270	GT	./.
chr1	11721271	.	G	.	.	LowGQX	END=11721329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11721330	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11721331	.	C	.	.	LowGQX	END=11721339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11721340	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11721341	.	G	.	.	LowGQX	END=11721346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11721347	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11721348	.	T	.	.	LowGQX	END=11721352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11721353	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11721354	.	G	.	.	LowGQX	END=11721361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11721362	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11721363	.	C	.	.	LowGQX	END=11721364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11728714	.	C	.	.	LowGQX	END=11729003	GT	./.
chr1	11731321	.	A	.	.	LowGQX	END=11731451	GT	./.
chr1	11731923	.	G	.	.	LowGQX	END=11732069	GT	./.
chr1	11732070	.	G	.	.	LowGQX	END=11732082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11733332	.	A	.	.	LowGQX	END=11733471	GT	./.
chr1	11733670	.	A	.	.	LowGQX	END=11733910	GT	./.
chr1	11734803	.	T	.	.	LowGQX	END=11734902	GT	./.
chr1	11735136	.	C	.	.	LowGQX	END=11735235	GT	./.
chr1	11735702	.	C	.	.	LowGQX	END=11735801	GT	./.
chr1	11735926	.	G	.	.	LowGQX	END=11736199	GT	./.
chr1	11736865	.	C	.	.	LowGQX	END=11737044	GT	./.
chr1	11737512	.	T	.	.	LowGQX	END=11737519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	11737520	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	11737521	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	11737522	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	11737523	.	C	.	.	LowGQX	END=11737572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11737573	.	T	.	.	LowGQX	END=11737688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	11737689	.	C	.	.	LowGQX	END=11737701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11740408	.	A	.	.	LowGQX	END=11740572	GT	./.
chr1	11740573	.	G	.	.	LowGQX	END=11740660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11766314	.	C	.	.	LowGQX	END=11766349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11766350	.	T	.	.	LowGQX	END=11766665	GT	./.
chr1	11766666	.	G	.	.	LowGQX	END=11766673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11766674	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11766675	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11766676	.	G	.	.	LowGQX	.	GT	./.
chr1	11766677	.	A	.	.	LowGQX	END=11766679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11766680	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11766681	.	G	.	.	LowGQX	END=11766683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11766684	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11766685	.	A	.	.	LowGQX	END=11766693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11766694	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11766695	.	C	.	.	LowGQX	END=11766703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11766704	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11766705	.	G	.	.	LowGQX	END=11766707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11766708	.	G	.	.	LowGQX	.	GT	./.
chr1	11766709	.	A	.	.	LowGQX	END=11766711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11766712	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11766713	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11766714	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11766715	.	A	.	.	LowGQX	END=11766728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11766729	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11766730	.	C	.	.	LowGQX	END=11766735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11766736	.	A	.	.	LowGQX	.	GT	./.
chr1	11766737	.	G	.	.	LowGQX	END=11766741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11766742	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11766743	.	G	.	.	LowGQX	END=11766744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11766745	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11766746	.	A	.	.	LowGQX	END=11766747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11766748	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11766749	.	G	.	.	LowGQX	END=11766756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11766757	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11766758	.	T	.	.	LowGQX	END=11766768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11769330	.	A	.	.	LowGQX	END=11769370	GT	./.
chr1	11769371	.	A	.	.	LowGQX	END=11769384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11769385	.	G	.	.	LowGQX	END=11769386	GT	./.
chr1	11769387	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11769388	.	G	.	.	LowGQX	.	GT	./.
chr1	11769389	.	C	.	.	LowGQX	END=11769400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11769401	.	A	.	.	LowGQX	.	GT	./.
chr1	11769402	.	T	.	.	LowGQX	END=11769403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11769404	.	C	.	.	LowGQX	.	GT	./.
chr1	11769405	.	A	.	.	LowGQX	END=11769414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11769415	.	G	.	.	LowGQX	END=11769416	GT	./.
chr1	11769417	.	A	.	.	LowGQX	END=11769419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11769420	.	C	.	.	LowGQX	.	GT	./.
chr1	11769421	.	T	.	.	LowGQX	END=11769426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11769427	.	A	.	.	LowGQX	.	GT	./.
chr1	11769428	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11769429	.	C	.	.	LowGQX	.	GT	./.
chr1	11769430	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11769431	.	T	.	.	LowGQX	.	GT	./.
chr1	11769432	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11769433	.	G	.	.	LowGQX	END=11769434	GT	./.
chr1	11769435	.	G	.	.	LowGQX	END=11769436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11769437	.	C	.	.	LowGQX	.	GT	./.
chr1	11769438	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11769439	.	A	.	.	LowGQX	.	GT	./.
chr1	11769440	.	C	.	.	LowGQX	END=11769444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11769445	.	T	.	.	LowGQX	.	GT	./.
chr1	11769446	.	T	.	.	LowGQX	END=11769447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11769448	.	T	.	.	LowGQX	END=11769449	GT	./.
chr1	11769450	.	T	.	.	LowGQX	END=11769485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11769486	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11769487	.	T	.	.	LowGQX	END=11769498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11769499	.	C	.	.	LowGQX	END=11769500	GT	./.
chr1	11769501	.	C	.	.	LowGQX	END=11769505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11769506	.	C	.	.	LowGQX	.	GT	./.
chr1	11769507	.	C	.	.	LowGQX	END=11769512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11769513	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11769514	.	C	.	.	LowGQX	.	GT	./.
chr1	11769515	.	G	.	.	LowGQX	END=11769519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11769520	.	C	.	.	LowGQX	.	GT	./.
chr1	11769521	.	A	.	.	LowGQX	END=11769522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11769523	.	G	.	.	LowGQX	.	GT	./.
chr1	11769524	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11771906	.	A	.	.	LowGQX	END=11771964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11771965	.	G	.	.	LowGQX	.	GT	./.
chr1	11771966	.	A	.	.	LowGQX	END=11772006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11772007	.	T	.	.	LowGQX	.	GT	./.
chr1	11772008	.	C	.	.	LowGQX	END=11772024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11772392	.	C	.	.	LowGQX	END=11772491	GT	./.
chr1	11775171	.	G	.	.	LowGQX	END=11775270	GT	./.
chr1	11779639	.	A	.	.	LowGQX	END=11779755	GT	./.
chr1	11796170	.	G	.	.	LowGQX	END=11796214	GT	./.
chr1	11796215	.	G	.	.	LowGQX	END=11796225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11796226	.	C	.	.	LowGQX	.	GT	./.
chr1	11796227	.	C	.	.	LowGQX	END=11796240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11796241	.	G	.	.	LowGQX	.	GT	./.
chr1	11796242	.	C	.	.	LowGQX	END=11796252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11796253	.	G	.	.	LowGQX	.	GT	./.
chr1	11796254	.	G	.	.	LowGQX	END=11796318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11796319	.	C	.	.	LowGQX	.	GT	./.
chr1	11796320	.	C	.	.	LowGQX	END=11796329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11804558	.	A	.	.	LowGQX	END=11804657	GT	./.
chr1	11805828	.	A	.	.	LowGQX	END=11805921	GT	./.
chr1	11805922	.	G	.	.	LowGQX	END=11805927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11806045	.	G	.	.	LowGQX	END=11806083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11806084	.	C	.	.	LowGQX	.	GT	./.
chr1	11806085	.	G	.	.	LowGQX	END=11806125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11806126	.	T	.	.	LowGQX	END=11806171	GT	./.
chr1	11806182	.	A	.	.	LowGQX	END=11806264	GT	./.
chr1	11806265	.	G	.	.	LowGQX	END=11806282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11807495	.	A	.	.	LowGQX	END=11807572	GT	./.
chr1	11807573	.	C	.	.	LowGQX	END=11807604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11808470	.	A	.	.	LowGQX	END=11808669	GT	./.
chr1	11810132	.	A	.	.	LowGQX	END=11810160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11810161	.	G	.	.	LowGQX	.	GT	./.
chr1	11810162	.	T	.	.	LowGQX	END=11810207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11810208	.	G	.	.	LowGQX	.	GT	./.
chr1	11810209	.	C	.	.	LowGQX	END=11810227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11810228	.	T	.	.	LowGQX	.	GT	./.
chr1	11810229	.	C	.	.	LowGQX	END=11810284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11810285	.	T	.	.	LowGQX	.	GT	./.
chr1	11810286	.	T	.	.	LowGQX	END=11810343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11821843	.	C	.	.	PASS	END=11821907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	11821908	.	C	.	.	PASS	END=11821941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	11821942	.	T	.	.	PASS	END=11821955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	11821956	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:72:60
chr1	11821957	.	G	.	.	PASS	END=11821960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	11821961	.	C	.	.	PASS	END=11821962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:66:60
chr1	11821963	.	C	.	.	PASS	END=11821981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	11821982	.	G	.	.	PASS	END=11821993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	11821994	.	C	.	.	PASS	END=11822000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	11822001	.	A	.	.	PASS	END=11822007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	11822008	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:36:60
chr1	11822009	.	C	.	.	PASS	END=11822012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	11822013	.	T	.	.	PASS	END=11822019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	11822020	.	A	.	.	PASS	END=11822029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	11822030	.	C	.	.	PASS	END=11822038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	11822039	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:11:60
chr1	11822040	.	T	.	.	PASS	END=11822047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	11822048	.	G	.	.	PASS	END=11822062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	11822063	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:48:60
chr1	11822064	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:60
chr1	11822065	.	G	.	.	PASS	END=11822066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	11822067	.	A	.	.	PASS	END=11822072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	11822073	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:2:60
chr1	11822074	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	11822075	.	C	.	.	PASS	END=11822087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	11822088	.	T	.	.	PASS	END=11822092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	11822093	.	A	.	.	PASS	END=11822098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	11822099	.	A	.	.	PASS	END=11822101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	11822102	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	11822103	.	C	.	.	PASS	END=11822105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	11822106	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:1:60
chr1	11822107	.	C	.	.	PASS	END=11822111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	11822112	.	T	.	.	LowGQX	END=11822113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr1	11822114	.	C	.	.	PASS	END=11822116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	11822117	.	G	.	.	LowGQX	END=11822118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	11822119	.	G	.	.	PASS	END=11822125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	11822126	.	T	.	.	LowGQX	END=11822127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	11822128	.	G	.	.	PASS	END=11822131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	11822132	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	11822133	.	G	.	.	PASS	END=11822134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	11822135	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	11822136	.	A	.	.	PASS	END=11822137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	11822138	.	C	.	.	LowGQX	END=11822141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	11822142	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	11822143	.	G	.	.	LowGQX	END=11822146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	11822147	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	11822148	.	G	.	.	LowGQX	END=11822156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	11822157	.	G	.	.	LowGQX	END=11822158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	11822159	.	A	.	.	LowGQX	END=11822164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	11822165	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr1	11822166	.	A	.	.	LowGQX	END=11822183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	11822184	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	11822185	.	C	.	.	LowGQX	END=11822187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr1	11822188	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	11822189	.	G	.	.	LowGQX	END=11822203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	11822204	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	11822205	.	C	.	.	LowGQX	END=11822210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	11822211	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	11822212	.	G	.	.	LowGQX	END=11822227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	11822228	.	G	.	.	LowGQX	END=11822232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	11822233	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	11822234	.	G	.	.	LowGQX	END=11822235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	11822236	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	11822237	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	11822238	.	G	.	.	LowGQX	END=11822239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	11822240	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	11822241	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	11822242	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	11822243	.	G	.	.	LowGQX	END=11822244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	11822245	.	T	.	8.19	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.02:60:0
chr1	11822246	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	11822247	.	T	.	.	LowGQX	END=11822248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	11822249	.	C	.	.	LowGQX	END=11822250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	11822251	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	11822252	.	C	.	.	LowGQX	END=11822253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	11822254	.	T	.	.	LowGQX	END=11822255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	11822256	.	C	.	.	LowGQX	END=11822292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	11822293	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	11822294	.	A	.	.	LowGQX	END=11822295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	11822296	.	C	.	.	LowGQX	END=11822298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	11822299	.	T	.	5.79	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:0.01:60:0
chr1	11822300	.	C	.	.	LowGQX	END=11822310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	11822311	.	T	.	2.30	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0:60:0
chr1	11822312	.	C	.	.	LowGQX	END=11822331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11824387	.	G	.	.	LowGQX	END=11824396	GT	./.
chr1	11824397	.	G	.	.	LowGQX	END=11824452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11824453	.	A	.	.	LowGQX	.	GT	./.
chr1	11824454	.	G	.	.	LowGQX	END=11824510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11824511	.	A	.	.	LowGQX	.	GT	./.
chr1	11824512	.	G	.	.	LowGQX	END=11824539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11825913	.	G	.	.	LowGQX	END=11825934	GT	./.
chr1	11825935	.	G	.	.	LowGQX	END=11825980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11825981	.	G	T	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	11825982	.	T	.	.	LowGQX	END=11826087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11826088	.	T	.	.	LowGQX	END=11826237	GT	./.
chr1	11826238	.	G	.	.	LowGQX	END=11826243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11826244	.	A	.	.	LowGQX	.	GT	./.
chr1	11826245	.	C	.	.	LowGQX	END=11826255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11826256	.	A	.	.	LowGQX	.	GT	./.
chr1	11826257	.	G	.	.	LowGQX	END=11826279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11826280	.	A	.	.	LowGQX	.	GT	./.
chr1	11826281	.	C	.	.	LowGQX	END=11826381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11826382	.	A	.	.	LowGQX	.	GT	./.
chr1	11826383	.	C	.	.	LowGQX	END=11826386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11826387	.	A	.	.	LowGQX	.	GT	./.
chr1	11826388	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11826389	.	G	.	.	LowGQX	END=11826396	GT	./.
chr1	11826397	.	A	.	.	LowGQX	END=11826401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11826402	.	T	.	.	LowGQX	.	GT	./.
chr1	11826403	.	T	.	.	LowGQX	END=11826448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11826449	.	T	.	.	LowGQX	.	GT	./.
chr1	11826450	.	G	.	.	LowGQX	END=11826546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11826547	.	C	.	.	LowGQX	END=11826633	GT	./.
chr1	11826747	.	C	.	.	LowGQX	END=11826846	GT	./.
chr1	11826970	.	G	.	.	LowGQX	END=11827088	GT	./.
chr1	11827089	.	G	.	.	LowGQX	END=11827095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11827096	.	C	.	.	LowGQX	.	GT	./.
chr1	11827097	.	A	.	.	LowGQX	END=11827100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11827101	.	T	.	.	LowGQX	END=11827102	GT	./.
chr1	11827103	.	C	.	.	LowGQX	END=11827124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11827125	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	11827126	.	C	.	.	LowGQX	.	GT	./.
chr1	11827127	.	G	.	.	LowGQX	END=11827132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11827133	.	T	.	.	LowGQX	.	GT	./.
chr1	11827134	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11827135	.	C	.	.	LowGQX	END=11827137	GT	./.
chr1	11827138	.	C	.	.	LowGQX	END=11827141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11827142	.	G	.	.	LowGQX	.	GT	./.
chr1	11827250	.	A	.	.	LowGQX	END=11827349	GT	./.
chr1	11828133	.	G	.	.	LowGQX	END=11828376	GT	./.
chr1	11831580	.	G	.	.	LowGQX	END=11831590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11831591	.	C	.	.	LowGQX	.	GT	./.
chr1	11831592	.	T	.	.	LowGQX	END=11831612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11831613	.	A	.	.	LowGQX	.	GT	./.
chr1	11831614	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11831615	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	11831616	.	G	.	.	LowGQX	END=11831617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11831618	.	C	.	.	LowGQX	END=11831619	GT	./.
chr1	11831620	.	T	.	.	LowGQX	END=11831629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11831630	.	C	.	.	LowGQX	.	GT	./.
chr1	11831631	.	C	.	.	LowGQX	END=11831638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11831639	.	A	.	.	LowGQX	.	GT	./.
chr1	11831640	.	G	.	.	LowGQX	END=11831647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11831648	.	A	.	.	LowGQX	.	GT	./.
chr1	11831649	.	G	.	.	LowGQX	END=11831650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11831651	.	A	.	.	LowGQX	.	GT	./.
chr1	11831652	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11831653	.	A	.	.	LowGQX	.	GT	./.
chr1	11831654	.	C	.	.	LowGQX	END=11831664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11831665	.	C	.	.	LowGQX	.	GT	./.
chr1	11831666	.	C	.	.	LowGQX	END=11831668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11831669	.	A	.	.	LowGQX	.	GT	./.
chr1	11831670	.	T	.	.	LowGQX	END=11831671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11831672	.	C	.	.	LowGQX	END=11831693	GT	./.
chr1	11832138	.	G	.	.	LowGQX	END=11832316	GT	./.
chr1	11835491	.	G	.	.	LowGQX	END=11835667	GT	./.
chr1	11836509	.	A	.	.	LowGQX	END=11836513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11836514	.	T	.	.	LowGQX	.	GT	./.
chr1	11836515	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11836516	.	C	.	.	LowGQX	END=11836555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11836556	.	T	.	.	LowGQX	END=11836557	GT	./.
chr1	11836558	.	T	.	.	LowGQX	END=11836564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11836565	.	G	.	.	LowGQX	.	GT	./.
chr1	11836566	.	G	.	.	LowGQX	END=11836585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11836586	.	G	.	.	LowGQX	END=11836587	GT	./.
chr1	11836588	.	G	.	.	LowGQX	END=11836589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11836590	.	A	.	.	LowGQX	.	GT	./.
chr1	11836591	.	G	.	.	LowGQX	END=11836592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11836593	.	A	.	.	LowGQX	.	GT	./.
chr1	11836594	.	G	.	.	LowGQX	END=11836621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11836622	.	G	.	.	LowGQX	.	GT	./.
chr1	11836623	.	C	.	.	LowGQX	END=11836627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11836628	.	T	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	11836629	.	G	.	.	LowGQX	END=11836635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11836636	.	G	.	.	LowGQX	.	GT	./.
chr1	11836637	.	G	.	.	LowGQX	END=11836638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11836639	.	C	.	.	LowGQX	.	GT	./.
chr1	11836640	.	C	.	.	LowGQX	END=11836644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11836645	.	C	.	.	LowGQX	.	GT	./.
chr1	11836646	.	T	.	.	LowGQX	END=11836648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11836649	.	G	.	.	LowGQX	.	GT	./.
chr1	11836650	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11836651	.	G	.	.	LowGQX	END=11836652	GT	./.
chr1	11836653	.	T	.	.	LowGQX	END=11836660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11836661	.	T	.	.	LowGQX	.	GT	./.
chr1	11836662	.	G	.	.	LowGQX	END=11836664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11836665	.	A	.	.	LowGQX	.	GT	./.
chr1	11836666	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11836667	.	A	.	.	LowGQX	.	GT	./.
chr1	11836668	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11836669	.	G	.	.	LowGQX	.	GT	./.
chr1	11836670	.	C	.	.	LowGQX	END=11836671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11836672	.	G	.	.	LowGQX	.	GT	./.
chr1	11836673	.	C	.	.	LowGQX	END=11836674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11836675	.	T	.	.	LowGQX	.	GT	./.
chr1	11836676	.	T	.	.	LowGQX	END=11836681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11836682	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	11836683	.	G	.	.	LowGQX	END=11836695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11838716	.	G	.	.	LowGQX	END=11838850	GT	./.
chr1	11838851	.	C	.	.	LowGQX	END=11838873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11838961	.	G	.	.	LowGQX	END=11838966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11838967	.	A	.	.	LowGQX	.	GT	./.
chr1	11838968	.	C	.	.	LowGQX	END=11838986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11838987	.	C	.	.	LowGQX	.	GT	./.
chr1	11838988	.	C	.	.	LowGQX	END=11839038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11839039	.	T	.	.	LowGQX	.	GT	./.
chr1	11839040	.	G	.	.	LowGQX	END=11839065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11839066	.	T	.	.	LowGQX	.	GT	./.
chr1	11839067	.	C	.	.	LowGQX	END=11839070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11839071	.	T	.	.	LowGQX	.	GT	./.
chr1	11839072	.	C	.	.	LowGQX	END=11839137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11839858	.	G	.	.	LowGQX	END=11840003	GT	./.
chr1	11840004	.	G	.	.	LowGQX	END=11840010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11840011	.	A	.	.	LowGQX	.	GT	./.
chr1	11840012	.	G	.	.	LowGQX	END=11840017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11840018	.	C	.	.	LowGQX	.	GT	./.
chr1	11840019	.	T	.	.	LowGQX	END=11840021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11840022	.	C	.	.	LowGQX	.	GT	./.
chr1	11840023	.	G	.	.	LowGQX	END=11840027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11840028	.	G	.	.	LowGQX	.	GT	./.
chr1	11840029	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11840030	.	A	.	.	LowGQX	.	GT	./.
chr1	11840031	.	C	.	.	LowGQX	END=11840032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11840033	.	A	.	.	LowGQX	.	GT	./.
chr1	11840034	.	G	.	.	LowGQX	END=11840039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11840040	.	C	.	.	LowGQX	.	GT	./.
chr1	11840041	.	T	.	.	LowGQX	END=11840044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11840045	.	C	.	.	LowGQX	.	GT	./.
chr1	11840046	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11840047	.	A	.	.	LowGQX	END=11840048	GT	./.
chr1	11840049	.	T	.	.	LowGQX	END=11840056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11840057	.	C	.	.	LowGQX	END=11840058	GT	./.
chr1	11840059	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11840060	.	T	.	.	LowGQX	.	GT	./.
chr1	11840061	.	T	.	.	LowGQX	END=11840063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11840064	.	C	.	.	LowGQX	.	GT	./.
chr1	11840065	.	A	.	.	LowGQX	END=11840066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11840067	.	G	.	.	LowGQX	.	GT	./.
chr1	11842245	.	G	.	.	LowGQX	END=11842300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11842301	.	C	.	.	LowGQX	END=11842390	GT	./.
chr1	11844230	.	G	.	.	LowGQX	END=11844270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11844271	.	G	.	.	LowGQX	END=11844363	GT	./.
chr1	11844364	.	G	.	.	LowGQX	END=11844372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11844373	.	G	.	.	LowGQX	.	GT	./.
chr1	11844374	.	C	.	.	LowGQX	END=11844386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11844387	.	T	.	.	LowGQX	.	GT	./.
chr1	11844388	.	G	.	.	LowGQX	END=11844411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11844412	.	T	.	.	LowGQX	.	GT	./.
chr1	11844413	.	G	.	.	LowGQX	END=11844417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11844418	.	A	.	.	LowGQX	.	GT	./.
chr1	11844419	.	G	.	.	LowGQX	END=11844420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11844421	.	T	.	.	LowGQX	.	GT	./.
chr1	11844422	.	G	.	.	LowGQX	END=11844431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11844432	.	A	.	.	LowGQX	.	GT	./.
chr1	11844433	.	G	.	.	LowGQX	END=11844442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11844443	.	A	.	.	LowGQX	.	GT	./.
chr1	11844444	.	T	.	.	LowGQX	END=11844510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11844511	.	C	.	.	LowGQX	END=11844650	GT	./.
chr1	11845204	.	G	.	.	LowGQX	END=11845244	GT	./.
chr1	11845245	.	G	.	.	LowGQX	END=11845323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11845324	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	11845325	.	G	.	.	LowGQX	END=11845346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11847444	.	G	.	.	LowGQX	END=11847536	GT	./.
chr1	11847537	.	G	.	.	LowGQX	END=11847550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11847929	.	G	.	.	LowGQX	END=11848056	GT	./.
chr1	11848057	.	G	.	.	LowGQX	END=11848104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11848205	.	G	.	.	LowGQX	END=11848208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11848209	.	T	.	.	LowGQX	.	GT	./.
chr1	11848210	.	C	.	.	LowGQX	END=11848213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11848214	.	C	.	.	LowGQX	END=11848435	GT	./.
chr1	11848706	.	A	.	.	LowGQX	END=11848805	GT	./.
chr1	11849326	.	G	.	.	LowGQX	END=11849336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11849337	.	A	.	.	LowGQX	.	GT	./.
chr1	11849338	.	G	.	.	LowGQX	END=11849345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11849346	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	11849347	.	A	.	.	LowGQX	.	GT	./.
chr1	11849348	.	C	.	.	LowGQX	END=11849367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	11849368	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	11849369	.	A	.	.	LowGQX	END=11849371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	11849372	.	A	.	.	LowGQX	.	GT	./.
chr1	11849373	.	G	.	.	LowGQX	END=11849416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11849417	.	A	.	.	LowGQX	.	GT	./.
chr1	11849418	.	A	.	.	LowGQX	END=11849427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11849428	.	G	.	.	LowGQX	.	GT	./.
chr1	11849429	.	A	.	.	LowGQX	END=11849430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11849431	.	T	.	.	LowGQX	.	GT	./.
chr1	11849432	.	G	.	.	LowGQX	END=11849433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11849434	.	A	.	.	LowGQX	.	GT	./.
chr1	11849435	.	C	.	.	LowGQX	END=11849446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11849447	.	A	.	2.30	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:2:0:60:0
chr1	11849448	.	G	.	.	LowGQX	END=11849455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11849456	.	C	.	.	LowGQX	.	GT	./.
chr1	11849457	.	G	.	.	LowGQX	END=11849460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11849461	.	T	.	.	LowGQX	.	GT	./.
chr1	11849462	.	T	.	.	LowGQX	END=11849485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11849486	.	G	.	.	LowGQX	END=11849516	GT	./.
chr1	11850686	.	G	.	.	PASS	END=11850700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	11850701	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:75:60
chr1	11850702	.	G	.	.	PASS	END=11850723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	11850724	.	T	.	.	PASS	END=11850735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	11850736	.	G	.	.	PASS	END=11850763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	11850764	.	C	.	.	PASS	END=11850884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	11850885	.	A	.	.	PASS	END=11850896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	11850897	.	G	.	.	PASS	END=11850920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	11850921	.	C	.	.	PASS	END=11850925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	11850926	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:69:60
chr1	11850927	.	C	.	.	PASS	END=11850941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	11850942	.	G	.	.	PASS	END=11850948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	11850949	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:54:60
chr1	11850950	.	C	.	.	PASS	END=11850972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	11850973	.	C	.	.	PASS	END=11850984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	11850985	.	C	.	.	PASS	END=11850987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	11850988	.	A	.	.	PASS	END=11850993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	11850994	.	A	.	.	PASS	END=11851001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	11851002	.	A	.	.	LowGQX	END=11851006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	11851213	.	T	.	.	PASS	END=11851256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	11851257	.	C	.	.	PASS	END=11851364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	11851365	.	C	.	.	PASS	END=11851411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:96:60
chr1	11851412	.	C	.	.	PASS	END=11851434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr1	11852284	.	T	.	.	PASS	END=11852316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	11852317	.	C	.	.	PASS	END=11852354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	11852355	.	A	.	.	PASS	END=11852415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	11852416	.	A	.	.	PASS	END=11852466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	11852467	.	C	.	.	PASS	END=11852487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	11853913	.	C	.	.	PASS	END=11853942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	11853943	.	C	.	.	PASS	END=11853959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	11853960	.	A	.	.	PASS	END=11854096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	11854097	.	A	.	.	PASS	END=11854125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	11854126	.	G	.	.	PASS	END=11854186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	11854187	.	T	.	.	PASS	END=11854197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	11854364	.	T	.	.	PASS	END=11854398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	11854399	.	C	.	.	PASS	END=11854456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	11854457	.	G	A	5005.23	PASS	DP=167;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=4.7346;MQ=60;MQ0=0;QD=29.97;SB=-2736.71	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,167:167:99:5005,370,0:60:99:1.000
chr1	11854458	.	A	.	.	PASS	END=11854532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	11854533	.	C	.	.	PASS	END=11854564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	11854565	.	C	.	.	PASS	END=11854595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	11854596	.	C	.	.	PASS	END=11854646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	11854735	.	C	.	.	PASS	END=11854754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	11854755	.	G	A	2923.34	PASS	DP=95;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=6.6812;MQ=60;MQ0=0;QD=30.77;SB=-1414.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,95:95:99:2956,223,0:60:99:1.000
chr1	11854756	.	T	.	.	PASS	END=11854818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	11854819	.	G	.	.	PASS	END=11854874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	11854875	.	C	.	.	PASS	END=11854917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	11854918	.	C	.	.	PASS	END=11854967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	11854968	.	G	.	.	PASS	END=11854971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	11855104	.	C	.	.	PASS	END=11855111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	11855112	.	C	.	.	PASS	END=11855123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	11855124	.	C	.	.	PASS	END=11855132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:90:60
chr1	11855133	.	A	.	.	PASS	END=11855134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	11855135	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:35:27:60
chr1	11855136	.	T	.	.	PASS	END=11855143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr1	11855144	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:72:60
chr1	11855145	.	C	.	.	PASS	END=11855176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	11855177	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:72:60
chr1	11855178	.	C	.	.	PASS	END=11855186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	11855187	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:72:60
chr1	11855188	.	A	.	.	PASS	END=11855203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	11855204	.	C	.	.	PASS	END=11855225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	11855226	.	G	.	.	PASS	END=11855263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	11855264	.	C	.	.	PASS	END=11855373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	11855374	.	A	.	.	PASS	END=11855412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	11855413	.	A	.	.	PASS	END=11855423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	11855424	.	G	.	.	PASS	END=11855442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	11855443	.	A	.	.	PASS	END=11855446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	11855447	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:40:60
chr1	11855448	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:84:60
chr1	11855449	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:63:60
chr1	11855450	.	C	.	.	PASS	END=11855456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	11856212	.	T	.	.	PASS	END=11856225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	11856226	.	G	.	.	PASS	END=11856246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	11856247	.	C	.	.	PASS	END=11856265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	11856266	.	G	.	.	PASS	END=11856306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	11856307	.	T	.	.	PASS	END=11856332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	11856333	.	A	.	.	PASS	END=11856415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	11856416	.	A	.	.	PASS	END=11856462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	11856463	.	A	.	.	PASS	END=11856482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	11856483	.	A	.	.	PASS	END=11856506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	11856507	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:99:60
chr1	11860218	.	T	.	.	PASS	END=11860230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	11860231	.	A	.	.	PASS	END=11860270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	11860271	.	G	.	.	PASS	END=11860353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	11860354	.	C	.	.	PASS	END=11860377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	11860378	.	G	.	.	PASS	END=11860399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr1	11860400	.	A	.	.	PASS	END=11860404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	11860405	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:72:60
chr1	11860406	.	A	.	.	PASS	END=11860421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	11860422	.	C	.	.	PASS	END=11860425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	11860426	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:62:60
chr1	11860427	.	A	.	.	PASS	END=11860430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	11861167	.	G	.	.	PASS	END=11861176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	11861177	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:3:60
chr1	11861178	.	A	.	.	PASS	END=11861185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	11861186	.	A	.	.	PASS	END=11861187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	11861188	.	C	.	.	PASS	END=11861192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	11861193	.	G	.	.	PASS	END=11861214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	11861215	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:87:60
chr1	11861216	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:66:60
chr1	11861217	.	C	.	.	PASS	END=11861234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	11861235	.	A	.	.	PASS	END=11861273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	11861274	.	C	.	.	PASS	END=11861306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	11861307	.	G	.	.	PASS	END=11861338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	11861339	.	G	.	.	PASS	END=11861419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	11861420	.	T	.	.	PASS	END=11861429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	11861430	.	G	.	.	PASS	END=11861464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	11861465	.	G	.	.	PASS	END=11861486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	11861487	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr1	11861488	.	C	.	.	PASS	END=11861498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	11861499	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:60
chr1	11861500	.	C	.	.	PASS	END=11861503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:96:60
chr1	11861504	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:60:60
chr1	11861505	.	G	.	.	PASS	END=11861507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	11862887	.	T	.	.	PASS	END=11862902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:84:60
chr1	11862903	.	C	.	.	PASS	END=11862915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	11862916	.	C	.	.	PASS	END=11862941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	11862942	.	A	.	.	PASS	END=11862970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	11862971	.	C	.	.	PASS	END=11863042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	11863043	.	C	.	.	PASS	END=11863105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	11863106	.	C	.	.	PASS	END=11863133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	11863134	.	A	.	.	PASS	END=11863175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	11863176	.	C	.	.	PASS	END=11863196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	11863197	.	T	.	.	PASS	END=11863202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	11863203	.	A	.	.	PASS	END=11863208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	11863209	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:75:60
chr1	11863210	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:99:60
chr1	11863211	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:72:60
chr1	11863212	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:99:60
chr1	11863213	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:65:60
chr1	11863214	.	G	.	.	PASS	END=11863238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:80:60
chr1	11863239	.	A	.	.	PASS	END=11863248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	11863249	.	A	.	.	PASS	END=11863256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	11863257	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:54:60
chr1	11863401	.	G	.	.	LowGQX	END=11863412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	11863413	.	C	.	.	LowGQX	END=11863423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	11863424	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	11863425	.	C	.	.	LowGQX	END=11863442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	11863443	.	G	.	.	LowGQX	END=11863445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	11863446	.	C	.	4.58	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.01:60:0
chr1	11863447	.	C	.	.	LowGQX	END=11863451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	11863452	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	11863453	.	G	.	.	LowGQX	END=11863470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	11863471	.	G	.	.	LowGQX	END=11863533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11863534	.	T	.	.	LowGQX	END=11863619	GT	./.
chr1	11866257	.	A	.	.	LowGQX	END=11866420	GT	./.
chr1	11866421	.	G	.	.	LowGQX	END=11866423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11866424	.	T	.	.	LowGQX	.	GT	./.
chr1	11866425	.	C	.	.	LowGQX	END=11866461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11866462	.	A	.	.	LowGQX	.	GT	./.
chr1	11866463	.	G	.	.	LowGQX	END=11866467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11867168	.	C	.	.	LowGQX	END=11867267	GT	./.
chr1	11875901	.	A	.	.	LowGQX	END=11875920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11875921	.	T	.	.	LowGQX	.	GT	./.
chr1	11875922	.	G	.	.	LowGQX	END=11875932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11875933	.	C	.	.	LowGQX	.	GT	./.
chr1	11875934	.	C	.	.	LowGQX	END=11875941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11875942	.	G	.	.	LowGQX	.	GT	./.
chr1	11875943	.	A	.	.	LowGQX	END=11875952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11875953	.	G	.	.	LowGQX	END=11875954	GT	./.
chr1	11875955	.	C	.	.	LowGQX	END=11875956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11875957	.	A	.	.	LowGQX	.	GT	./.
chr1	11875958	.	T	.	.	LowGQX	END=11875975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11875976	.	T	.	.	LowGQX	.	GT	./.
chr1	11875977	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11875978	.	A	.	.	LowGQX	.	GT	./.
chr1	11875979	.	C	.	.	LowGQX	END=11875983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11875984	.	C	.	.	LowGQX	.	GT	./.
chr1	11875985	.	T	.	.	LowGQX	END=11875989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11875990	.	C	.	.	LowGQX	.	GT	./.
chr1	11875991	.	T	.	.	LowGQX	END=11875996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11875997	.	G	.	.	LowGQX	END=11875998	GT	./.
chr1	11875999	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11876000	.	C	.	.	LowGQX	END=11876002	GT	./.
chr1	11876003	.	A	.	.	LowGQX	END=11876004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11876005	.	C	.	.	LowGQX	.	GT	./.
chr1	11876006	.	A	.	.	LowGQX	END=11876007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11876008	.	T	.	.	LowGQX	END=11876011	GT	./.
chr1	11876012	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11876013	.	A	.	.	LowGQX	.	GT	./.
chr1	11876600	.	G	.	.	LowGQX	END=11876754	GT	./.
chr1	11879529	.	C	.	.	LowGQX	END=11879628	GT	./.
chr1	11880380	.	G	.	.	LowGQX	END=11880464	GT	./.
chr1	11880465	.	G	.	.	LowGQX	END=11880479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11882750	.	A	.	.	LowGQX	END=11882860	GT	./.
chr1	11883762	.	A	.	.	LowGQX	END=11883892	GT	./.
chr1	11884527	.	T	.	.	LowGQX	END=11884614	GT	./.
chr1	11884615	.	G	.	.	LowGQX	END=11884619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11884620	.	G	.	.	LowGQX	.	GT	./.
chr1	11884621	.	C	.	.	LowGQX	END=11884626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11886198	.	T	.	.	LowGQX	END=11886297	GT	./.
chr1	11887104	.	G	.	.	LowGQX	END=11887275	GT	./.
chr1	11887276	.	G	.	.	LowGQX	END=11887280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11888161	.	A	.	.	LowGQX	END=11888213	GT	./.
chr1	11888214	.	A	.	.	LowGQX	END=11888278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11888483	.	T	.	.	LowGQX	END=11888522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11888523	.	C	.	.	LowGQX	END=11888683	GT	./.
chr1	11889251	.	A	.	.	LowGQX	END=11889262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11889263	.	A	.	.	LowGQX	.	GT	./.
chr1	11889264	.	G	.	.	LowGQX	END=11889290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11889291	.	T	.	.	LowGQX	.	GT	./.
chr1	11889292	.	G	.	.	LowGQX	END=11889311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11889312	.	T	.	.	LowGQX	.	GT	./.
chr1	11889313	.	G	.	.	LowGQX	END=11889314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11889315	.	T	.	.	LowGQX	END=11889348	GT	./.
chr1	11889349	.	T	.	.	LowGQX	END=11889381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11893570	.	A	.	.	LowGQX	END=11893697	GT	./.
chr1	11893932	.	A	.	.	LowGQX	END=11893937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11893938	.	T	.	.	LowGQX	.	GT	./.
chr1	11893939	.	T	.	.	LowGQX	END=11893945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11893946	.	C	.	.	LowGQX	.	GT	./.
chr1	11893947	.	C	.	.	LowGQX	END=11893988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11893989	.	A	.	.	LowGQX	.	GT	./.
chr1	11893990	.	T	.	.	LowGQX	END=11893991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	11893992	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	11893993	.	T	.	.	LowGQX	END=11894007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11894008	.	T	.	.	LowGQX	.	GT	./.
chr1	11894009	.	C	.	.	LowGQX	END=11894018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11894019	.	T	.	.	LowGQX	.	GT	./.
chr1	11894020	.	G	.	.	LowGQX	END=11894021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11894022	.	C	.	.	LowGQX	.	GT	./.
chr1	11894023	.	C	.	.	LowGQX	END=11894034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11894035	.	T	.	.	LowGQX	.	GT	./.
chr1	11894036	.	C	.	.	LowGQX	END=11894041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11894042	.	T	.	.	LowGQX	.	GT	./.
chr1	11894043	.	G	.	.	LowGQX	END=11894048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11894049	.	A	.	.	LowGQX	.	GT	./.
chr1	11894050	.	G	.	.	LowGQX	END=11894051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11894052	.	T	.	.	LowGQX	.	GT	./.
chr1	11894053	.	G	.	.	LowGQX	END=11894070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11894071	.	G	.	.	LowGQX	.	GT	./.
chr1	11894072	.	C	.	.	LowGQX	END=11894085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11894086	.	A	.	.	LowGQX	END=11894121	GT	./.
chr1	11894291	.	A	.	.	LowGQX	END=11894353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11894354	.	T	.	.	LowGQX	END=11894454	GT	./.
chr1	11894539	.	A	.	.	LowGQX	END=11894646	GT	./.
chr1	11894647	.	A	.	.	LowGQX	END=11894649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11896022	.	A	.	.	LowGQX	END=11896212	GT	./.
chr1	11897054	.	A	.	.	LowGQX	END=11897215	GT	./.
chr1	11897398	.	A	.	.	LowGQX	END=11897426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11897427	.	T	.	.	LowGQX	END=11897558	GT	./.
chr1	11898340	.	C	.	.	LowGQX	END=11898501	GT	./.
chr1	11898590	.	A	.	.	LowGQX	END=11899050	GT	./.
chr1	11900191	.	T	.	.	LowGQX	END=11900290	GT	./.
chr1	11906015	.	T	.	.	PASS	END=11906036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:96:60
chr1	11906037	.	G	.	.	PASS	END=11906068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	11906069	.	G	.	.	PASS	END=11906138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	11907119	.	G	.	.	PASS	END=11907121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	11907122	.	T	.	.	PASS	END=11907142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	11907143	.	C	.	.	PASS	END=11907178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	11907179	.	G	.	.	PASS	END=11907206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	11907207	.	A	.	.	PASS	END=11907493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	11907494	.	A	.	.	PASS	END=11907547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr1	11907568	.	A	.	.	PASS	END=11907595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	11907596	.	T	.	.	PASS	END=11907674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	11907675	.	T	.	.	PASS	END=11907736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	11907737	.	C	.	.	PASS	END=11907779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	11907780	.	T	.	.	PASS	END=11907792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	11917671	.	T	.	.	PASS	END=11917751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	11917752	.	A	.	.	PASS	END=11917770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	11918269	.	A	.	.	PASS	END=11918339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	11918340	.	C	.	.	PASS	END=11918377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	11918378	.	A	.	.	PASS	END=11918453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	11918454	.	C	.	.	PASS	END=11918528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	11918717	.	A	.	.	PASS	END=11918732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:78:60
chr1	11918733	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:69:60
chr1	11918734	.	C	.	.	PASS	END=11918745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	11918746	.	C	.	.	PASS	END=11918761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	11918762	.	T	.	.	PASS	END=11918830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	11918831	.	A	.	.	PASS	END=11918885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	11918886	.	T	.	.	PASS	END=11918892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	11980331	.	T	.	.	LowGQX	END=11980384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11980385	.	T	.	.	LowGQX	.	GT	./.
chr1	11980386	.	C	.	.	LowGQX	END=11980430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11982575	.	A	.	.	LowGQX	END=11982926	GT	./.
chr1	11982927	.	G	.	.	LowGQX	END=11982928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11982929	.	T	.	.	LowGQX	.	GT	./.
chr1	11982930	.	G	.	.	LowGQX	END=11982934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11982935	.	G	.	.	LowGQX	.	GT	./.
chr1	11982936	.	T	.	.	LowGQX	END=11982937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11982938	.	T	.	.	LowGQX	.	GT	./.
chr1	11982939	.	C	.	.	LowGQX	END=11982944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11982945	.	G	.	.	LowGQX	.	GT	./.
chr1	11982946	.	A	.	.	LowGQX	END=11982947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11982948	.	C	.	.	LowGQX	.	GT	./.
chr1	11982949	.	G	.	.	LowGQX	END=11982958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11982959	.	G	.	.	LowGQX	.	GT	./.
chr1	11982960	.	G	.	.	LowGQX	END=11982966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11982967	.	G	.	.	LowGQX	.	GT	./.
chr1	11982968	.	G	.	.	LowGQX	END=11982971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11982972	.	C	.	.	LowGQX	.	GT	./.
chr1	11982973	.	G	.	.	LowGQX	END=11982975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11982976	.	G	.	.	LowGQX	.	GT	./.
chr1	11982977	.	T	.	.	LowGQX	END=11982980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11982981	.	C	.	.	LowGQX	.	GT	./.
chr1	11982982	.	T	.	.	LowGQX	END=11982987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11982988	.	G	.	.	LowGQX	.	GT	./.
chr1	11982989	.	G	.	.	LowGQX	END=11982994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11982995	.	C	.	.	LowGQX	.	GT	./.
chr1	11982996	.	C	.	.	LowGQX	END=11982997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11982998	.	G	.	.	LowGQX	.	GT	./.
chr1	11982999	.	G	.	.	LowGQX	END=11983007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11983008	.	C	.	.	LowGQX	.	GT	./.
chr1	11983009	.	T	.	.	LowGQX	END=11983012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11983013	.	A	.	.	LowGQX	END=11983014	GT	./.
chr1	11983015	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11983016	.	C	.	.	LowGQX	.	GT	./.
chr1	11983017	.	A	.	.	LowGQX	END=11983024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11983025	.	T	.	.	LowGQX	END=11983026	GT	./.
chr1	11983027	.	A	.	.	LowGQX	END=11983028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11983029	.	A	.	.	LowGQX	.	GT	./.
chr1	11983030	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11983031	.	G	.	.	LowGQX	.	GT	./.
chr1	11983032	.	C	.	.	LowGQX	END=11983034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11983035	.	G	.	.	LowGQX	.	GT	./.
chr1	11983036	.	C	.	.	LowGQX	END=11983049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	11983050	.	G	.	.	LowGQX	.	GT	./.
chr1	11983051	.	G	.	.	LowGQX	END=11983066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:54
chr1	11983067	.	G	.	.	LowGQX	.	GT	./.
chr1	11983068	.	C	.	.	LowGQX	END=11983071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:54
chr1	11983072	.	C	.	.	LowGQX	.	GT	./.
chr1	11983073	.	C	.	.	LowGQX	END=11983076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:54
chr1	11983077	.	G	.	.	LowGQX	END=11983078	GT	./.
chr1	11983079	.	C	.	.	LowGQX	END=11983087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11983088	.	G	.	.	LowGQX	.	GT	./.
chr1	11983089	.	C	.	.	LowGQX	END=11983106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11983107	.	G	.	.	LowGQX	.	GT	./.
chr1	11983108	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11983109	.	C	.	.	LowGQX	.	GT	./.
chr1	11983110	.	G	.	.	LowGQX	END=11983113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11983114	.	T	.	.	LowGQX	.	GT	./.
chr1	11983115	.	T	.	.	LowGQX	END=11983119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11983120	.	C	.	.	LowGQX	.	GT	./.
chr1	11983121	.	G	.	.	LowGQX	END=11983123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11983124	.	T	.	.	LowGQX	END=11983125	GT	./.
chr1	11983126	.	C	.	.	LowGQX	END=11983128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11983129	.	T	.	.	LowGQX	.	GT	./.
chr1	11983130	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11983131	.	C	.	.	LowGQX	.	GT	./.
chr1	11983132	.	A	.	.	LowGQX	END=11983135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11983136	.	C	.	.	LowGQX	.	GT	./.
chr1	11983137	.	A	.	.	LowGQX	END=11983149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11983150	.	A	.	.	LowGQX	.	GT	./.
chr1	11983151	.	G	.	.	LowGQX	END=11983164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11983165	.	G	.	.	LowGQX	.	GT	./.
chr1	11983166	.	C	.	.	LowGQX	END=11983182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11983183	.	T	.	.	LowGQX	END=11983184	GT	./.
chr1	11983185	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11983186	.	T	.	.	LowGQX	.	GT	./.
chr1	11983187	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11983188	.	T	.	.	LowGQX	END=11983284	GT	./.
chr1	11983285	.	A	.	.	LowGQX	END=11983286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	11983287	.	C	.	.	LowGQX	.	GT	./.
chr1	11983288	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr1	11983289	.	T	.	.	LowGQX	END=11983290	GT	./.
chr1	11983291	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr1	11983292	.	A	.	.	LowGQX	.	GT	./.
chr1	11983293	.	C	.	.	LowGQX	END=11983327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	11983328	.	A	.	.	LowGQX	.	GT	./.
chr1	11983329	.	C	.	.	LowGQX	END=11983342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	11983343	.	A	.	.	LowGQX	.	GT	./.
chr1	11983344	.	C	.	.	LowGQX	END=11983377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	11983378	.	A	.	33	LowGQX	DP=2;MQ=53;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:53:3
chr1	11983379	.	A	.	.	LowGQX	END=11983381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:53
chr1	11983382	.	A	.	33	LowGQX	DP=2;MQ=53;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:53:3
chr1	11983383	.	G	.	.	LowGQX	END=11983398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:53
chr1	11983399	.	A	.	33.01	LowGQX	DP=3;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:56:3
chr1	11983400	.	G	.	.	LowGQX	END=11983405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:56
chr1	11983406	.	A	.	33.01	LowGQX	DP=3;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:56:3
chr1	11983407	.	C	.	.	LowGQX	END=11983408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:56
chr1	11983409	.	C	.	33.01	LowGQX	DP=3;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:56:3
chr1	11983410	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:56
chr1	11983411	.	A	.	33.01	LowGQX	DP=3;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:56:3
chr1	11983412	.	T	.	.	LowGQX	END=11983538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:56
chr1	11983539	.	T	.	.	LowGQX	END=11983548	GT	./.
chr1	11985260	.	A	.	.	LowGQX	END=11985440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	11985441	.	A	.	.	LowGQX	END=11986302	GT	./.
chr1	11994786	.	C	.	.	PASS	END=11994793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	11994794	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:0:60
chr1	11994795	.	C	.	.	PASS	END=11994796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	11994797	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr1	11994798	.	G	.	.	PASS	END=11994800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	11994801	.	C	.	.	PASS	END=11994808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	11994809	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	11994810	.	C	.	.	PASS	END=11994815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	11994816	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:1:60
chr1	11994817	.	T	.	.	PASS	END=11994818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	11994819	.	G	.	.	PASS	END=11994822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	11994823	.	C	.	.	PASS	END=11994825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	11994826	.	A	.	.	PASS	END=11994828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:60
chr1	11994829	.	C	.	.	PASS	END=11994837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	11994838	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:48:60
chr1	11994839	.	G	.	.	PASS	END=11994858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	11994859	.	C	.	.	PASS	END=11994903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	11994904	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:56:60
chr1	11994905	.	G	.	.	PASS	END=11994906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	11994907	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:42:60
chr1	11994908	.	G	.	.	PASS	END=11994913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	11994914	.	T	.	.	PASS	END=11994916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	11994917	.	G	.	.	PASS	END=11994919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	11994920	.	A	.	.	PASS	END=11994925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	11994926	.	G	.	.	PASS	END=11994929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	11994930	.	G	.	.	PASS	END=11994934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	11994935	.	C	.	.	PASS	END=11994946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	11994947	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:60
chr1	11994948	.	C	.	.	PASS	END=11994949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	11994950	.	G	.	.	PASS	END=11994956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	11994957	.	A	.	.	PASS	END=11994958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:57:60
chr1	11994959	.	G	.	.	PASS	END=11994961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	11994962	.	T	.	.	PASS	END=11994963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr1	12004547	.	A	.	.	LowGQX	END=12004719	GT	./.
chr1	12007982	.	T	.	.	PASS	END=12007985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	12007986	.	C	.	.	PASS	END=12007988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	12007989	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:48:60
chr1	12007990	.	C	.	.	PASS	END=12008010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	12008011	.	C	.	.	PASS	END=12008016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	12008017	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:47:60
chr1	12008018	.	C	.	.	PASS	END=12008067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:90:60
chr1	12008068	.	A	.	.	PASS	END=12008143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	12008144	.	A	.	.	PASS	END=12008175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:96:60
chr1	12009779	.	G	.	.	PASS	END=12009805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	12009806	.	G	.	.	PASS	END=12009836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	12009837	.	G	.	.	PASS	END=12009878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:95:60
chr1	12009879	.	G	.	.	PASS	END=12009939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	12009940	.	T	.	.	PASS	END=12009954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr1	12009955	.	C	T	1482.94	PASS	DP=55;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=2.8408;MQ=60;MQ0=0;QD=26.96;SB=-693.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,54:55:99:1516,111,0:60:99:1.000
chr1	12009956	.	G	.	.	PASS	END=12009981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	12009982	.	C	.	.	PASS	END=12009988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	12009989	.	T	.	.	PASS	END=12010004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	12010005	.	A	.	.	PASS	END=12010014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	12010363	.	G	.	.	PASS	END=12010369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	12010370	.	G	.	.	PASS	END=12010373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	12010374	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:42:60
chr1	12010375	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:63:60
chr1	12010376	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:24:60
chr1	12010377	.	C	.	.	PASS	END=12010394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	12010395	.	C	.	.	PASS	END=12010401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	12010402	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:60:60
chr1	12010403	.	T	.	.	PASS	END=12010412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	12010413	.	G	.	.	PASS	END=12010449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	12010450	.	C	.	.	PASS	END=12010492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	12010493	.	G	.	.	PASS	END=12010563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	12010564	.	C	.	.	PASS	END=12010600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	12010601	.	C	.	.	PASS	END=12010616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	12010617	.	G	.	.	PASS	END=12010628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	12012629	.	G	.	.	PASS	END=12012649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	12012650	.	G	.	.	PASS	END=12012673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	12012674	.	C	.	.	PASS	END=12012788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	12012789	.	G	.	.	PASS	END=12012806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	12012807	.	G	.	.	PASS	END=12012819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	12012820	.	A	.	.	PASS	END=12012832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	12012833	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:75:60
chr1	12012834	.	C	.	.	PASS	END=12012843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	12014591	.	G	.	.	LowGQX	END=12014596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	12014597	.	T	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	12014598	.	G	.	.	LowGQX	END=12014599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	12014600	.	T	.	.	LowGQX	END=12014603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	12014604	.	T	.	.	LowGQX	END=12014608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	12014609	.	T	.	.	LowGQX	END=12014610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	12014611	.	A	.	.	LowGQX	END=12014617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	12014618	.	G	.	.	LowGQX	END=12014620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	12014621	.	A	.	.	LowGQX	END=12014622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	12014623	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	12014624	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	12014625	.	T	.	.	LowGQX	END=12014626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	12014627	.	G	.	.	LowGQX	END=12014633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	12014634	.	A	.	.	LowGQX	END=12014635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	12014636	.	C	.	.	LowGQX	END=12014647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	12014648	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	12014649	.	T	.	.	LowGQX	END=12014651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	12014652	.	A	.	.	LowGQX	END=12014653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	12014654	.	T	.	.	LowGQX	END=12014657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	12014658	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	12014659	.	C	.	.	LowGQX	END=12014661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	12014662	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	12014663	.	T	.	.	LowGQX	END=12014664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	12014665	.	C	.	.	PASS	END=12014667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	12014668	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	12014669	.	G	.	.	PASS	END=12014670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	12014671	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	12014672	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	12014673	.	C	.	.	LowGQX	END=12014676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	12014677	.	T	.	48.05	LowGQX	DP=10;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:18.06:60:18
chr1	12014678	.	T	.	54.07	LowGQX	DP=10;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:24.08:60:24
chr1	12014679	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	12014680	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	12014681	.	C	.	.	LowGQX	END=12014682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	12014683	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	12014684	.	T	.	.	LowGQX	END=12014686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	12014687	.	G	.	.	PASS	END=12014688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	12014689	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	12014690	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	12014836	.	G	.	.	PASS	END=12014857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	12014858	.	G	.	.	PASS	END=12014968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	12014969	.	G	.	.	PASS	END=12014987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	12014988	.	G	.	.	PASS	END=12015001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	12016923	.	G	.	.	PASS	END=12016950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	12016951	.	G	.	.	PASS	END=12017037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	12017038	.	C	.	.	PASS	END=12017058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	12017059	.	C	.	.	PASS	END=12017079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	12017080	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:69:60
chr1	12017081	.	C	.	.	PASS	END=12017091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:60
chr1	12017092	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:54:60
chr1	12017093	.	G	.	.	PASS	END=12017097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	12017098	.	T	.	.	PASS	END=12017099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	12017100	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:60
chr1	12017101	.	G	.	.	PASS	END=12017122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	12017147	.	T	.	.	PASS	END=12017151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	12017152	.	C	.	.	PASS	END=12017161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	12017162	.	A	.	.	PASS	END=12017183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	12017184	.	C	.	.	PASS	END=12017197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	12017198	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	12017199	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	12017200	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	12017201	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	12017202	.	T	.	.	PASS	END=12017203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	12017204	.	T	.	.	LowGQX	END=12017208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	12017209	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	12017210	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	12017211	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	12017212	.	T	.	.	LowGQX	END=12017214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	12017215	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:1:60
chr1	12017216	.	A	.	.	LowGQX	END=12017218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	12017219	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	12017220	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:1:60
chr1	12017221	.	A	.	.	LowGQX	END=12017224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	12017225	.	T	.	.	LowGQX	END=12017229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	12017230	.	C	.	.	LowGQX	END=12017232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	12017233	.	T	.	.	LowGQX	END=12017238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	12017239	.	C	.	.	LowGQX	END=12017241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	12017242	.	G	.	.	LowGQX	END=12017243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	12017244	.	T	.	.	LowGQX	END=12017245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	12017246	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	12017247	.	G	.	.	LowGQX	END=12017248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	12017249	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	12017250	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	12017848	.	A	.	.	PASS	END=12017882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	12017883	.	C	.	.	PASS	END=12017972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	12017973	.	A	.	.	PASS	END=12018019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	12018020	.	T	.	.	PASS	END=12018051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:94:60
chr1	12018522	.	A	.	.	PASS	END=12018535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	12018536	.	A	.	.	PASS	END=12018538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	12018539	.	C	.	.	PASS	END=12018549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	12018550	.	T	.	.	PASS	END=12018556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	12018557	.	G	.	.	PASS	END=12018566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	12018567	.	G	.	.	PASS	END=12018583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr1	12018584	.	G	.	.	PASS	END=12018609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:87:60
chr1	12018610	.	T	.	.	PASS	END=12018635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	12018636	.	C	.	.	PASS	END=12018713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	12018714	.	A	.	.	PASS	END=12018731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	12018732	.	T	.	.	PASS	END=12018739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	12018740	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:75:60
chr1	12018741	.	T	.	.	PASS	END=12018755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	12020652	.	G	.	.	PASS	END=12020668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	12020669	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:36:60
chr1	12020670	.	C	.	.	PASS	END=12020674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	12020675	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:33:60
chr1	12020676	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:60:60
chr1	12020677	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:60
chr1	12020678	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:24:60
chr1	12020679	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:42:60
chr1	12020680	.	C	.	.	PASS	END=12020682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	12020683	.	T	.	49.44	LowGQX	DP=27;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:21:27:19.45:60:19
chr1	12020684	.	T	.	.	PASS	END=12020688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	12020689	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:15:60
chr1	12020690	.	T	.	.	PASS	END=12020691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr1	12020692	.	C	.	.	PASS	END=12020695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	12020696	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:48:60
chr1	12020697	.	C	.	.	PASS	END=12020705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr1	12020706	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:37:1:60
chr1	12020707	.	A	.	.	PASS	END=12020721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	12020722	.	A	.	.	PASS	END=12020822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	12020823	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:67:60
chr1	12020824	.	C	.	.	PASS	END=12020837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	12020838	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:62:60
chr1	12020839	.	A	.	.	PASS	END=12020849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	12020850	.	C	.	.	PASS	END=12020855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	12020856	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:27:60
chr1	12020857	.	A	.	.	PASS	END=12020872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	12020873	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:9:60
chr1	12020874	.	T	.	.	PASS	END=12020875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	12023538	.	A	.	.	PASS	END=12023539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	12023540	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:24:60
chr1	12023541	.	A	.	.	PASS	END=12023564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	12023565	.	G	.	.	PASS	END=12023573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	12023574	.	T	.	.	PASS	END=12023589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	12023590	.	G	.	.	PASS	END=12023619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:93:60
chr1	12023620	.	T	.	.	PASS	END=12023708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	12023709	.	C	.	.	PASS	END=12023720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:84:60
chr1	12023721	.	C	.	.	PASS	END=12023730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:72:60
chr1	12023731	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:87:60
chr1	12023732	.	T	.	.	PASS	END=12023742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	12023743	.	T	.	.	PASS	END=12023744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	12024181	.	T	.	.	PASS	END=12024203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	12024204	.	C	.	.	PASS	END=12024234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	12024235	.	C	T	4808.81	PASS	BaseQRankSum=1.558;DP=190;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=20.8826;MQ=60;MQ0=0;MQRankSum=0.524;QD=25.31;ReadPosRankSum=0.860;SB=-3087.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,188:190:99:4809,310,0:60:99:0.989
chr1	12024236	.	G	.	.	PASS	END=12024300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	12024301	.	A	.	.	PASS	END=12024328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	12024329	.	T	.	.	PASS	END=12024338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	12024339	.	T	.	.	PASS	END=12024349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	12024350	.	C	.	.	PASS	END=12024356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	12024357	.	T	.	.	PASS	END=12024362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	12024363	.	T	.	.	PASS	END=12024369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	12024370	.	A	.	.	PASS	END=12024373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	12024374	.	T	.	.	PASS	END=12024376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	12024377	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	12024378	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	12024379	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	12024380	.	T	.	.	LowGQX	END=12024382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	12024383	.	G	.	.	LowGQX	END=12024384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	12024385	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	12024386	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	12024387	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:0:60
chr1	12024388	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:30:60
chr1	12024389	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:42:60
chr1	12024390	.	A	.	.	PASS	END=12024393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	12024394	.	C	.	.	PASS	END=12024395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	12024396	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:57:60
chr1	12024397	.	C	.	.	PASS	END=12024405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	12024406	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:51:60
chr1	12024407	.	C	.	.	PASS	END=12024408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	12024650	.	C	.	.	PASS	END=12024651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr1	12024652	.	T	.	.	PASS	END=12024659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	12024660	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:60:60
chr1	12024661	.	C	.	.	PASS	END=12024665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	12024666	.	C	.	.	PASS	END=12024683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	12024684	.	T	.	.	PASS	END=12024691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	12024692	.	C	.	.	PASS	END=12024704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	12024705	.	G	.	.	PASS	END=12024722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	12024723	.	A	.	.	PASS	END=12024745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	12024746	.	G	.	.	PASS	END=12024775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:60
chr1	12024776	.	C	.	.	PASS	END=12024857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:247:99:60
chr1	12024858	.	G	.	.	PASS	END=12024879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	12024880	.	T	.	.	PASS	END=12024893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	12025486	.	G	.	.	PASS	END=12025495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	12025496	.	G	.	.	PASS	END=12025504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	12025505	.	A	.	.	PASS	END=12025530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	12025531	.	C	.	.	PASS	END=12025666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	12025667	.	C	.	.	PASS	END=12025684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	12025685	.	A	.	.	PASS	END=12025701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	12026251	.	C	.	.	PASS	END=12026339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	12026340	.	C	.	.	PASS	END=12026374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr1	12026375	.	T	.	.	PASS	END=12026388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	12026389	.	A	.	.	PASS	END=12026400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	12026401	.	C	.	.	PASS	END=12026413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	12026414	.	T	.	.	PASS	END=12026423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	12026424	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:42:60
chr1	12026993	.	A	.	.	PASS	END=12027008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	12027009	.	G	.	.	PASS	END=12027033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	12027034	.	C	.	.	PASS	END=12027071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	12027072	.	T	.	.	PASS	END=12027137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	12027138	.	G	.	.	PASS	END=12027163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:93:60
chr1	12027164	.	C	.	.	PASS	END=12027183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr1	12027184	.	G	.	.	PASS	END=12027193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	12027194	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:63:60
chr1	12027195	.	C	.	.	PASS	END=12027199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	12030676	.	C	.	.	PASS	END=12030699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	12030700	.	C	.	.	PASS	END=12030719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	12030720	.	C	.	.	PASS	END=12030755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	12030756	.	C	.	.	PASS	END=12030835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	12030836	.	C	.	.	PASS	END=12030869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	12030870	.	C	.	.	PASS	END=12030889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr1	12030890	.	C	.	.	PASS	END=12030907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:77:60
chr1	12030908	.	A	.	.	PASS	END=12030916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	12030917	.	T	.	.	PASS	END=12030919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	12030920	.	G	.	.	PASS	END=12030923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	12030924	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:42:60
chr1	12032878	.	T	.	.	PASS	END=12032891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	12032892	.	C	.	.	PASS	END=12032914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	12032915	.	C	.	.	PASS	END=12032942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:96:60
chr1	12032943	.	G	.	.	PASS	END=12032987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:91:60
chr1	12032988	.	G	.	.	PASS	END=12033055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	12033056	.	T	.	.	PASS	END=12033083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:78:60
chr1	12033084	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:66:60
chr1	12033085	.	C	.	.	PASS	END=12033105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:96:60
chr1	12034659	.	G	.	.	PASS	END=12034672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	12034673	.	C	.	.	PASS	END=12034675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	12034676	.	T	.	156.54	PASS	DP=66;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:50:66:99:60:99
chr1	12034677	.	G	.	.	PASS	END=12034732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	12034733	.	C	.	.	PASS	END=12034801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	12034802	.	C	.	.	PASS	END=12034822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	12034823	.	C	.	.	PASS	END=12034834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:89:60
chr1	12034835	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:75:60
chr1	12034836	.	T	.	.	PASS	END=12034857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	12034858	.	A	.	.	PASS	END=12034880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	12034881	.	C	.	.	PASS	END=12034890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	12034891	.	C	.	.	PASS	END=12034907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	12034908	.	A	.	.	PASS	END=12034916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	12049175	.	C	.	.	PASS	END=12049203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr1	12049204	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:69:60
chr1	12049205	.	G	.	.	PASS	END=12049227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	12049228	.	G	.	.	PASS	END=12049233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	12049234	.	G	.	.	PASS	END=12049258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	12049259	.	G	.	.	PASS	END=12049378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	12049379	.	G	.	.	PASS	END=12049386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	12049387	.	C	.	.	PASS	END=12049401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	12049402	.	T	.	.	PASS	END=12049421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	12049422	.	C	.	.	PASS	END=12049432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	12049433	.	T	.	.	PASS	END=12049440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	12049441	.	T	.	.	PASS	END=12049451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	12052561	.	T	.	.	PASS	END=12052612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:90:60
chr1	12052613	.	C	.	.	PASS	END=12052645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	12052646	.	C	.	.	PASS	END=12052707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	12052708	.	T	.	.	PASS	END=12052725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	12052726	.	T	.	.	PASS	END=12052744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	12052745	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:73:60
chr1	12052746	.	C	.	.	PASS	END=12052761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	12052762	.	C	.	.	PASS	END=12052787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	12052788	.	A	.	.	PASS	END=12052792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	12052793	.	G	.	.	PASS	END=12052798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	12056162	.	A	.	.	PASS	END=12056195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	12056196	.	C	.	.	PASS	END=12056281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	12056282	.	C	.	.	PASS	END=12056348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	12056349	.	G	.	.	PASS	END=12056378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	12056379	.	A	.	.	PASS	END=12056389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	12056390	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:46:60
chr1	12056391	.	T	.	.	PASS	END=12056394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	12056395	.	T	.	.	PASS	END=12056397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	12056398	.	C	.	.	PASS	END=12056413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	12056414	.	G	.	.	PASS	END=12056426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	12057303	.	C	.	.	PASS	END=12057324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	12057325	.	G	.	.	PASS	END=12057369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:97:60
chr1	12057370	.	C	.	.	PASS	END=12057455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	12057456	.	G	.	.	PASS	END=12057487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	12057488	.	A	.	.	PASS	END=12057529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	12058776	.	A	.	.	PASS	END=12058819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	12058820	.	C	.	.	PASS	END=12058906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	12058907	.	C	.	.	PASS	END=12058982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	12058983	.	G	.	.	PASS	END=12058986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	12058994	.	G	.	.	PASS	END=12059083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	12059084	.	C	.	.	PASS	END=12059123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	12059124	.	C	.	.	PASS	END=12059145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	12059146	.	G	.	.	PASS	END=12059153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	12059154	.	T	.	.	PASS	END=12059158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	12059159	.	G	.	.	PASS	END=12059173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	12059174	.	T	.	.	PASS	END=12059182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	12059183	.	T	.	.	PASS	END=12059185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	12059186	.	A	.	.	PASS	END=12059203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	12061407	.	G	.	.	PASS	END=12061418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	12061419	.	C	.	.	PASS	END=12061420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:42:60
chr1	12061421	.	C	.	.	PASS	END=12061430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	12061431	.	C	.	.	PASS	END=12061448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	12061449	.	G	.	.	PASS	END=12061469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	12061470	.	C	.	.	PASS	END=12061511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	12061512	.	G	.	.	PASS	END=12061557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	12061558	.	C	.	.	PASS	END=12061621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	12061622	.	G	.	.	PASS	END=12061662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	12061775	.	T	.	.	PASS	END=12061805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	12061806	.	A	.	.	PASS	END=12061818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	12061819	.	C	.	.	PASS	END=12061888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	12061889	.	T	.	.	PASS	END=12061944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	12061988	.	T	.	.	PASS	END=12062124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	12062125	.	C	.	.	PASS	END=12062145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	12062146	.	G	.	.	PASS	END=12062204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	12062205	.	A	G	2436.27	PASS	DP=84;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=9.5840;MQ=60;MQ0=0;QD=29.00;SB=-836.86	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,84:84:99:2469,190,0:60:99:1.000
chr1	12062206	.	A	.	.	PASS	END=12062211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	12063998	.	T	.	.	PASS	END=12064035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr1	12064036	.	A	.	.	PASS	END=12064087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	12064088	.	A	.	.	PASS	END=12064179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	12064180	.	G	.	.	PASS	END=12064199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	12064200	.	T	.	.	PASS	END=12064223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	12064224	.	A	.	.	PASS	END=12064226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	12064515	.	G	.	.	PASS	END=12064517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	12064518	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:62:60
chr1	12064519	.	A	.	.	PASS	END=12064534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	12064535	.	A	.	.	PASS	END=12064564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	12064565	.	G	.	.	PASS	END=12064599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	12064600	.	T	.	.	PASS	END=12064632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	12064633	.	T	.	.	PASS	END=12064721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	12064831	.	A	.	.	PASS	END=12064931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	12064932	.	C	.	.	PASS	END=12064955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	12064956	.	C	.	.	PASS	END=12064972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	12064973	.	A	.	.	PASS	END=12064992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	12064993	.	C	.	.	PASS	END=12065018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	12065019	.	C	.	.	PASS	END=12065035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	12065717	.	G	.	.	PASS	END=12065763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	12065764	.	A	.	.	PASS	END=12065766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	12065767	.	G	.	.	PASS	END=12065780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	12065781	.	C	.	.	PASS	END=12065801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:79:60
chr1	12065802	.	G	.	.	PASS	END=12065821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	12065822	.	T	.	.	PASS	END=12065863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	12065864	.	A	.	.	PASS	END=12065956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	12065957	.	G	.	.	PASS	END=12065996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	12065997	.	A	.	.	PASS	END=12066027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	12066028	.	C	.	.	PASS	END=12066038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	12066039	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:99:60
chr1	12066544	.	A	.	.	PASS	END=12066551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr1	12066552	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:66:60
chr1	12066553	.	C	.	.	PASS	END=12066554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	12066555	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:69:60
chr1	12066556	.	A	.	.	PASS	END=12066569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	12066570	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:50:60
chr1	12066571	.	C	.	.	PASS	END=12066577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	12066578	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:75:60
chr1	12066579	.	A	.	.	PASS	END=12066603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	12066604	.	C	.	.	PASS	END=12066625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	12066626	.	A	.	.	PASS	END=12066739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	12066740	.	T	.	.	PASS	END=12066765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	12066766	.	T	.	.	PASS	END=12066794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:78:60
chr1	12066795	.	T	.	.	PASS	END=12066799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	12066800	.	G	.	.	PASS	END=12066801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	12067059	.	G	.	.	PASS	END=12067063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	12067064	.	T	.	.	PASS	END=12067065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	12067066	.	G	.	.	PASS	END=12067071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	12067072	.	A	.	.	PASS	END=12067077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	12067078	.	G	.	.	PASS	END=12067083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	12067084	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:18:60
chr1	12067085	.	T	.	.	PASS	END=12067093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	12067094	.	A	.	.	PASS	END=12067098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	12067099	.	G	.	.	PASS	END=12067106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	12067107	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:21:60
chr1	12067108	.	A	.	.	PASS	END=12067119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	12067120	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:33:60
chr1	12067121	.	A	.	.	PASS	END=12067146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	12067147	.	C	.	.	PASS	END=12067164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	12067165	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr1	12067166	.	C	.	.	PASS	END=12067172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	12067173	.	G	.	.	PASS	END=12067196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	12067197	.	A	.	.	PASS	END=12067223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	12067224	.	C	.	.	PASS	END=12067316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	12067317	.	C	.	.	PASS	END=12067336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	12067337	.	A	.	.	PASS	END=12067354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	12067355	.	C	.	.	PASS	END=12067357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	12069598	.	T	.	.	PASS	END=12069609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:59
chr1	12069610	.	C	.	.	PASS	END=12069617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:86:60
chr1	12069618	.	C	.	.	PASS	END=12069650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	12069651	.	A	.	.	PASS	END=12069670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	12069671	.	C	.	.	PASS	END=12069767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	12069768	.	A	.	.	PASS	END=12069794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	12069795	.	C	.	.	PASS	END=12069821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:96:60
chr1	12069822	.	G	.	.	PASS	END=12069834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	12071502	.	A	.	.	PASS	END=12071598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	12071599	.	C	.	.	PASS	END=12071622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	12071623	.	T	.	.	PASS	END=12071647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	12071648	.	G	.	.	PASS	END=12071657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	12071658	.	G	.	.	PASS	END=12071673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	12073362	.	G	.	.	LowGQX	END=12073467	GT	./.
chr1	12081731	.	T	.	.	PASS	END=12081816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:285:99:60
chr1	12081817	.	C	.	.	PASS	END=12081863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	12081864	.	T	.	.	PASS	END=12081899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	12082145	.	T	.	.	PASS	END=12082349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr1	12082350	.	T	.	.	PASS	END=12082451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:278:99:60
chr1	12082452	.	G	.	.	PASS	END=12082487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	12082488	.	A	.	.	PASS	END=12082501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	12082883	.	T	.	.	PASS	END=12082913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	12082914	.	T	.	.	PASS	END=12082925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	12082926	.	A	G	1748.56	PASS	BaseQRankSum=0.430;DP=122;Dels=0.00;FS=1.477;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=1.714;QD=14.33;ReadPosRankSum=0.250;SB=-1057.91	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:54,68:122:99:1779,0,1299:60:99:0.557
chr1	12082927	.	A	.	.	PASS	END=12082964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	12082965	.	T	.	.	PASS	END=12082982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	12089088	.	A	.	.	PASS	END=12089200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	12089260	.	C	.	.	PASS	END=12089343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	12089344	.	T	.	.	PASS	END=12089359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	12089820	.	A	.	.	PASS	END=12089833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	12089834	.	A	.	.	PASS	END=12089953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	12090083	.	A	.	.	PASS	END=12090112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	12090113	.	C	.	.	PASS	END=12090183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	12091321	.	A	.	.	PASS	END=12091384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	12091385	.	C	.	.	PASS	END=12091441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	12091442	.	C	.	.	PASS	END=12091462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	12091715	.	T	.	.	PASS	END=12091717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	12091718	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:74:60
chr1	12091719	.	A	.	.	PASS	END=12091728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	12091729	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:74:60
chr1	12091730	.	C	.	.	PASS	END=12091750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	12091751	.	C	.	.	PASS	END=12091772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:87:60
chr1	12091773	.	A	.	.	PASS	END=12091805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	12091806	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:114:66:60
chr1	12091807	.	C	.	.	PASS	END=12091831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	12091832	.	C	.	.	PASS	END=12091874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	12123578	.	C	.	.	LowGQX	END=12123737	GT	./.
chr1	12144515	.	T	.	.	LowGQX	END=12144524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12144525	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	12144526	.	A	.	.	LowGQX	END=12144534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12144535	.	G	.	.	LowGQX	.	GT	./.
chr1	12144536	.	G	.	.	LowGQX	END=12144548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12144549	.	G	.	.	LowGQX	.	GT	./.
chr1	12144550	.	A	.	.	LowGQX	END=12144554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12144555	.	C	.	.	LowGQX	END=12144556	GT	./.
chr1	12144557	.	A	.	.	LowGQX	END=12144565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12144566	.	T	.	.	LowGQX	.	GT	./.
chr1	12144567	.	A	.	.	LowGQX	END=12144572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12144573	.	A	.	.	LowGQX	END=12144574	GT	./.
chr1	12144575	.	G	.	.	LowGQX	END=12144583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12144584	.	A	.	.	LowGQX	.	GT	./.
chr1	12144585	.	G	.	.	LowGQX	END=12144595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12144596	.	C	.	.	LowGQX	.	GT	./.
chr1	12144597	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12144598	.	C	.	.	LowGQX	.	GT	./.
chr1	12144599	.	T	.	.	LowGQX	END=12144603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12144604	.	C	.	.	LowGQX	.	GT	./.
chr1	12144605	.	A	.	.	LowGQX	END=12144607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12144608	.	G	.	.	LowGQX	.	GT	./.
chr1	12144609	.	G	.	.	LowGQX	END=12144614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12157156	.	A	.	.	LowGQX	END=12157196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12157197	.	A	.	.	LowGQX	END=12157276	GT	./.
chr1	12164434	.	A	.	.	LowGQX	END=12164590	GT	./.
chr1	12169619	.	G	.	.	LowGQX	END=12169624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12169625	.	A	.	.	LowGQX	.	GT	./.
chr1	12169626	.	C	.	.	LowGQX	END=12169633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12169634	.	A	.	.	LowGQX	.	GT	./.
chr1	12169635	.	A	.	.	LowGQX	END=12169636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12169637	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	12169638	.	A	.	.	LowGQX	END=12169639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12169640	.	A	.	.	LowGQX	.	GT	./.
chr1	12169641	.	C	.	.	LowGQX	END=12169662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12169663	.	A	.	.	LowGQX	.	GT	./.
chr1	12169664	.	G	.	.	LowGQX	END=12169668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12169669	.	C	.	.	LowGQX	.	GT	./.
chr1	12169670	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12169671	.	G	.	.	LowGQX	END=12169672	GT	./.
chr1	12169673	.	C	.	.	LowGQX	END=12169684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12169685	.	A	.	.	LowGQX	.	GT	./.
chr1	12169686	.	G	.	.	LowGQX	END=12169691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12169692	.	A	.	.	LowGQX	.	GT	./.
chr1	12169693	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12169694	.	A	.	.	LowGQX	.	GT	./.
chr1	12169695	.	A	.	.	LowGQX	END=12169699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12169700	.	A	.	.	LowGQX	.	GT	./.
chr1	12169701	.	A	.	.	LowGQX	END=12169703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12169704	.	A	.	.	LowGQX	.	GT	./.
chr1	12169705	.	A	.	.	LowGQX	END=12169706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12169707	.	C	.	.	LowGQX	END=12169718	GT	./.
chr1	12170066	.	A	.	.	LowGQX	END=12170263	GT	./.
chr1	12171903	.	G	.	.	LowGQX	END=12171945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12171946	.	T	.	.	LowGQX	.	GT	./.
chr1	12171947	.	T	.	.	LowGQX	END=12171993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12171994	.	A	.	.	LowGQX	END=12172073	GT	./.
chr1	12175582	.	C	.	.	LowGQX	END=12175788	GT	./.
chr1	12183338	.	C	.	.	LowGQX	END=12183353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12183354	.	G	.	.	LowGQX	.	GT	./.
chr1	12183355	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12183356	.	A	.	.	LowGQX	.	GT	./.
chr1	12183357	.	C	.	.	LowGQX	END=12183380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12183381	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	12183382	.	G	.	.	LowGQX	END=12183437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12183770	.	A	.	.	LowGQX	END=12183886	GT	./.
chr1	12186006	.	A	.	.	LowGQX	END=12186111	GT	./.
chr1	12186217	.	C	.	.	LowGQX	END=12186316	GT	./.
chr1	12195608	.	G	.	.	LowGQX	END=12195707	GT	./.
chr1	12198284	.	A	.	.	LowGQX	END=12198296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198297	.	T	.	.	LowGQX	END=12198298	GT	./.
chr1	12198299	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198300	.	T	.	.	LowGQX	.	GT	./.
chr1	12198301	.	G	.	.	LowGQX	END=12198303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198304	.	T	.	.	LowGQX	.	GT	./.
chr1	12198305	.	C	.	.	LowGQX	END=12198310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198311	.	C	.	.	LowGQX	.	GT	./.
chr1	12198312	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198313	.	G	.	.	LowGQX	.	GT	./.
chr1	12198314	.	A	.	.	LowGQX	END=12198319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198320	.	T	.	.	LowGQX	END=12198321	GT	./.
chr1	12198322	.	G	.	.	LowGQX	END=12198328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198329	.	A	.	.	LowGQX	END=12198330	GT	./.
chr1	12198331	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198332	.	G	.	.	LowGQX	.	GT	./.
chr1	12198333	.	A	.	.	LowGQX	END=12198335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198336	.	G	.	.	LowGQX	END=12198337	GT	./.
chr1	12198338	.	T	.	.	LowGQX	END=12198346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198347	.	A	.	.	LowGQX	END=12198348	GT	./.
chr1	12198349	.	C	.	.	LowGQX	END=12198350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198351	.	A	.	.	LowGQX	END=12198352	GT	./.
chr1	12198353	.	T	.	.	LowGQX	END=12198354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198355	.	A	.	.	LowGQX	END=12198356	GT	./.
chr1	12198357	.	G	.	.	LowGQX	END=12198359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198360	.	G	.	.	LowGQX	END=12198361	GT	./.
chr1	12198362	.	C	.	.	LowGQX	END=12198363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198364	.	T	.	.	LowGQX	.	GT	./.
chr1	12198365	.	G	.	.	LowGQX	END=12198367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198368	.	A	.	.	LowGQX	.	GT	./.
chr1	12198369	.	C	.	.	LowGQX	END=12198373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198374	.	T	.	.	LowGQX	END=12198376	GT	./.
chr1	12198377	.	G	.	.	LowGQX	END=12198380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198381	.	A	.	.	LowGQX	.	GT	./.
chr1	12198382	.	G	.	.	LowGQX	END=12198385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198386	.	A	.	.	LowGQX	.	GT	./.
chr1	12198387	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198388	.	C	.	.	LowGQX	.	GT	./.
chr1	12198389	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198390	.	G	.	.	LowGQX	.	GT	./.
chr1	12198391	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198392	.	A	.	.	LowGQX	END=12198393	GT	./.
chr1	12198394	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198395	.	G	.	.	LowGQX	.	GT	./.
chr1	12198396	.	C	.	.	LowGQX	END=12198406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198407	.	A	.	.	LowGQX	.	GT	./.
chr1	12198408	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198409	.	G	.	.	LowGQX	END=12198410	GT	./.
chr1	12198411	.	T	.	.	LowGQX	END=12198414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198415	.	A	.	.	LowGQX	.	GT	./.
chr1	12198416	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198417	.	C	.	.	LowGQX	.	GT	./.
chr1	12198418	.	C	.	.	LowGQX	END=12198419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198420	.	G	.	.	LowGQX	END=12198421	GT	./.
chr1	12198422	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198423	.	C	.	.	LowGQX	.	GT	./.
chr1	12198424	.	G	.	.	LowGQX	END=12198426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198427	.	G	.	.	LowGQX	END=12198428	GT	./.
chr1	12198429	.	C	.	.	LowGQX	END=12198430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198431	.	C	.	.	LowGQX	.	GT	./.
chr1	12198432	.	C	.	.	LowGQX	END=12198437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198438	.	C	.	.	LowGQX	.	GT	./.
chr1	12198439	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198440	.	C	.	.	LowGQX	.	GT	./.
chr1	12198441	.	C	.	.	LowGQX	END=12198443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12198444	.	G	.	.	LowGQX	END=12198495	GT	./.
chr1	12202342	.	A	.	.	LowGQX	END=12202466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12202467	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	12202468	.	T	.	.	LowGQX	END=12202472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12202473	.	C	.	.	LowGQX	.	GT	./.
chr1	12202474	.	C	.	.	LowGQX	END=12202498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12202499	.	C	.	.	LowGQX	.	GT	./.
chr1	12202500	.	C	.	.	LowGQX	END=12202520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12202521	.	A	.	.	LowGQX	.	GT	./.
chr1	12202522	.	T	.	.	LowGQX	END=12202528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12202529	.	C	.	.	LowGQX	.	GT	./.
chr1	12202530	.	T	.	.	LowGQX	END=12202531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12202532	.	T	.	.	LowGQX	END=12202535	GT	./.
chr1	12202536	.	T	.	.	LowGQX	END=12202537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12202538	.	G	.	.	LowGQX	.	GT	./.
chr1	12202539	.	A	.	.	LowGQX	END=12202548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12202549	.	G	.	.	LowGQX	.	GT	./.
chr1	12202550	.	A	.	.	LowGQX	END=12202566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12202567	.	C	.	.	LowGQX	.	GT	./.
chr1	12202568	.	A	.	.	LowGQX	END=12202570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12202571	.	G	.	.	LowGQX	.	GT	./.
chr1	12202572	.	C	.	.	LowGQX	END=12202576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12202577	.	T	.	.	LowGQX	.	GT	./.
chr1	12202578	.	C	.	.	LowGQX	END=12202580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12202581	.	G	.	.	LowGQX	.	GT	./.
chr1	12202582	.	A	.	.	LowGQX	END=12202590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12227086	.	G	.	.	PASS	END=12227095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	12227096	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:39:60
chr1	12227097	.	G	.	.	PASS	END=12227120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	12227121	.	A	.	.	PASS	END=12227131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	12227132	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:2:60
chr1	12227133	.	G	.	.	PASS	END=12227138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	12227139	.	G	.	.	PASS	END=12227176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	12227177	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	12227178	.	G	.	.	PASS	END=12227191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	12227192	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:3:60
chr1	12227193	.	G	.	.	PASS	END=12227201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	12227202	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	12227203	.	G	.	.	PASS	END=12227214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	12227215	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	12227216	.	T	.	.	PASS	END=12227219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	12227220	.	C	.	.	LowGQX	END=12227225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	12227226	.	G	.	.	LowGQX	END=12227231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	12227232	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	12227233	.	G	.	.	LowGQX	END=12227238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	12227464	.	T	.	.	LowGQX	END=12227623	GT	./.
chr1	12248851	.	A	.	.	PASS	END=12248954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	12251012	.	A	.	.	PASS	END=12251046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	12251047	.	C	.	.	PASS	END=12251140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	12251141	.	T	.	.	PASS	END=12251144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	12251799	.	C	.	.	PASS	END=12251807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:60
chr1	12251808	.	T	G	3346.89	PASS	BaseQRankSum=2.970;DP=290;Dels=0.00;FS=5.031;HRun=0;HaplotypeScore=30.5021;MQ=60;MQ0=0;MQRankSum=-1.672;QD=11.54;ReadPosRankSum=-0.691;SB=-1843.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:151,139:290:99:3347,0,3447:60:99:0.479
chr1	12251809	.	T	.	.	PASS	END=12251915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:284:99:60
chr1	12251916	.	G	.	.	PASS	END=12251941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	12251942	.	T	.	.	PASS	END=12251974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	12251975	.	G	.	.	PASS	END=12251982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	12252360	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:2:60
chr1	12252361	.	G	.	.	PASS	END=12252367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	12252368	.	G	.	.	PASS	END=12252370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	12252371	.	T	.	.	PASS	END=12252372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	12252373	.	G	.	.	PASS	END=12252375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	12252376	.	G	.	.	PASS	END=12252385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	12252386	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:45:60
chr1	12252387	.	G	.	.	PASS	END=12252398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	12252399	.	C	.	.	PASS	END=12252404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	12252405	.	A	.	.	PASS	END=12252408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	12252409	.	C	.	.	PASS	END=12252431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	12252432	.	C	.	.	PASS	END=12252450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	12252451	.	G	.	.	PASS	END=12252459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	12252485	.	A	.	.	PASS	END=12252516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	12252517	.	C	.	.	PASS	END=12252582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	12252583	.	T	.	.	PASS	END=12252584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	12252918	.	A	.	.	PASS	END=12253111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	12253112	.	C	.	.	PASS	END=12253157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	12253167	.	G	.	.	PASS	END=12253205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	12253206	.	C	.	.	PASS	END=12253224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	12253225	.	T	.	.	PASS	END=12253253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	12253254	.	G	.	.	PASS	END=12253266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	12254001	.	T	.	.	PASS	END=12254013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	12254014	.	C	.	.	PASS	END=12254031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	12254032	.	G	.	.	PASS	END=12254100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	12254609	.	A	.	.	PASS	END=12254636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	12254637	.	A	.	.	PASS	END=12254708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	12262022	.	A	.	.	PASS	END=12262048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	12262049	.	G	.	.	PASS	END=12262161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	12262162	.	C	.	.	PASS	END=12262199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	12262200	.	G	.	.	PASS	END=12262217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	12262218	.	C	.	.	PASS	END=12262230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	12266795	.	A	.	.	PASS	END=12266824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	12266825	.	G	.	.	PASS	END=12266857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	12266858	.	C	.	.	PASS	END=12266959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	12266960	.	C	.	.	PASS	END=12267051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	12267052	.	C	.	.	PASS	END=12267079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	12294322	.	T	.	.	LowGQX	END=12294422	GT	./.
chr1	12302559	.	T	.	.	LowGQX	END=12302658	GT	./.
chr1	12304301	.	A	.	.	LowGQX	END=12304495	GT	./.
chr1	12304585	.	T	.	.	LowGQX	END=12304684	GT	./.
chr1	12309278	.	A	.	.	LowGQX	END=12309398	GT	./.
chr1	12313777	.	A	.	.	LowGQX	END=12313834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12313835	.	G	.	.	LowGQX	.	GT	./.
chr1	12313836	.	G	.	.	LowGQX	END=12313847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12313848	.	A	.	.	LowGQX	.	GT	./.
chr1	12313849	.	C	.	.	LowGQX	END=12313862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12313863	.	T	.	.	LowGQX	END=12313885	GT	./.
chr1	12316388	.	A	.	.	LowGQX	END=12316562	GT	./.
chr1	12317042	.	A	.	.	LowGQX	END=12317146	GT	./.
chr1	12317990	.	A	.	.	LowGQX	END=12318162	GT	./.
chr1	12320748	.	A	.	.	LowGQX	END=12320853	GT	./.
chr1	12321003	.	A	.	.	LowGQX	END=12321208	GT	./.
chr1	12321956	.	A	.	.	LowGQX	END=12322139	GT	./.
chr1	12326936	.	A	.	.	LowGQX	END=12327070	GT	./.
chr1	12327830	.	A	.	.	LowGQX	END=12327989	GT	./.
chr1	12328761	.	A	.	.	LowGQX	END=12328935	GT	./.
chr1	12331049	.	A	.	.	LowGQX	END=12331183	GT	./.
chr1	12333058	.	A	.	.	LowGQX	END=12333194	GT	./.
chr1	12335880	.	A	.	.	LowGQX	END=12335987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12335988	.	C	.	.	LowGQX	END=12337961	GT	./.
chr1	12337962	.	G	.	.	LowGQX	END=12337971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12337972	.	G	.	.	LowGQX	.	GT	./.
chr1	12337973	.	A	.	.	LowGQX	END=12337977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12337978	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	12337979	.	T	.	.	LowGQX	END=12337996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12337997	.	G	.	.	LowGQX	.	GT	./.
chr1	12337998	.	G	.	.	LowGQX	END=12338023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12338024	.	G	.	.	LowGQX	.	GT	./.
chr1	12338025	.	C	.	.	LowGQX	END=12338083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12338084	.	A	.	.	LowGQX	.	GT	./.
chr1	12338085	.	T	.	.	LowGQX	END=12338097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12339554	.	A	.	.	LowGQX	END=12339709	GT	./.
chr1	12342760	.	A	.	.	LowGQX	END=12342975	GT	./.
chr1	12342976	.	C	.	.	LowGQX	END=12343096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12343097	.	G	.	.	LowGQX	END=12343098	GT	./.
chr1	12343099	.	T	.	.	LowGQX	END=12343117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12343118	.	A	.	.	LowGQX	.	GT	./.
chr1	12343119	.	T	.	.	LowGQX	END=12343126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12343127	.	A	.	.	LowGQX	END=12343160	GT	./.
chr1	12343161	.	C	.	.	LowGQX	END=12343178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12343179	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	12343180	.	A	.	.	LowGQX	END=12343207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12343208	.	T	.	.	LowGQX	.	GT	./.
chr1	12343209	.	A	.	.	LowGQX	END=12343234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12343235	.	A	.	.	LowGQX	.	GT	./.
chr1	12343236	.	G	.	.	LowGQX	END=12343261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12343262	.	A	.	.	LowGQX	.	GT	./.
chr1	12343263	.	C	.	.	LowGQX	END=12343311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12343312	.	A	.	.	LowGQX	END=12343795	GT	./.
chr1	12348276	.	C	.	.	LowGQX	END=12348375	GT	./.
chr1	12351053	.	A	.	.	LowGQX	END=12351183	GT	./.
chr1	12353579	.	A	.	.	LowGQX	END=12353763	GT	./.
chr1	12359257	.	A	.	.	LowGQX	END=12359443	GT	./.
chr1	12364561	.	A	.	.	LowGQX	END=12364562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12364563	.	G	.	.	LowGQX	.	GT	./.
chr1	12364564	.	A	.	.	LowGQX	END=12364567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12364568	.	T	.	.	LowGQX	.	GT	./.
chr1	12364569	.	G	.	.	LowGQX	END=12364573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12364574	.	T	.	.	LowGQX	.	GT	./.
chr1	12364575	.	T	.	.	LowGQX	END=12364580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12364581	.	T	.	.	LowGQX	.	GT	./.
chr1	12364582	.	C	.	.	LowGQX	END=12364593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12364594	.	T	.	.	LowGQX	.	GT	./.
chr1	12364595	.	T	.	.	LowGQX	END=12364606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12364607	.	T	.	.	LowGQX	.	GT	./.
chr1	12364608	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12364609	.	T	.	.	LowGQX	END=12364610	GT	./.
chr1	12364611	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12364612	.	G	.	.	LowGQX	.	GT	./.
chr1	12364613	.	G	.	.	LowGQX	END=12364625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12364626	.	A	.	.	LowGQX	.	GT	./.
chr1	12364627	.	C	.	.	LowGQX	END=12364642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12364643	.	A	.	.	LowGQX	END=12364746	GT	./.
chr1	12364747	.	A	.	.	LowGQX	END=12364770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12364771	.	A	.	.	LowGQX	.	GT	./.
chr1	12364772	.	G	.	.	LowGQX	END=12364787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12368486	.	A	.	.	LowGQX	END=12368700	GT	./.
chr1	12371509	.	A	.	.	LowGQX	END=12371684	GT	./.
chr1	12371868	.	A	.	.	LowGQX	END=12371984	GT	./.
chr1	12374170	.	A	.	.	LowGQX	END=12374386	GT	./.
chr1	12378127	.	A	.	.	LowGQX	.	GT	./.
chr1	12378128	.	G	.	.	LowGQX	END=12378146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12378147	.	C	.	.	LowGQX	.	GT	./.
chr1	12378148	.	T	.	.	LowGQX	END=12378157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12378158	.	T	.	.	LowGQX	.	GT	./.
chr1	12378159	.	A	.	.	LowGQX	END=12378164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12378165	.	C	.	.	LowGQX	.	GT	./.
chr1	12378166	.	A	.	.	LowGQX	END=12378171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12378172	.	C	.	.	LowGQX	.	GT	./.
chr1	12378173	.	T	.	.	LowGQX	END=12378182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12378183	.	T	.	.	LowGQX	END=12378216	GT	./.
chr1	12378217	.	T	.	.	LowGQX	END=12378221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12378222	.	C	.	.	LowGQX	.	GT	./.
chr1	12378223	.	C	.	.	LowGQX	END=12378229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12378230	.	C	.	.	LowGQX	.	GT	./.
chr1	12378231	.	C	.	.	LowGQX	END=12378236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12378237	.	T	.	.	LowGQX	.	GT	./.
chr1	12378238	.	A	.	.	LowGQX	END=12378249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12378250	.	A	.	.	LowGQX	.	GT	./.
chr1	12378251	.	A	.	.	LowGQX	END=12378263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12378264	.	T	.	.	LowGQX	.	GT	./.
chr1	12378265	.	T	.	.	LowGQX	END=12378268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12378269	.	G	.	.	LowGQX	.	GT	./.
chr1	12378270	.	C	.	.	LowGQX	END=12378271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12378272	.	A	.	.	LowGQX	.	GT	./.
chr1	12378273	.	C	.	.	LowGQX	END=12378302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12378303	.	T	.	.	LowGQX	.	GT	./.
chr1	12378304	.	C	.	.	LowGQX	END=12378313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12378314	.	T	.	.	LowGQX	.	GT	./.
chr1	12378315	.	G	.	.	LowGQX	END=12378330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12378331	.	A	.	.	LowGQX	.	GT	./.
chr1	12378332	.	C	.	.	LowGQX	END=12378334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12378335	.	A	.	.	LowGQX	.	GT	./.
chr1	12378336	.	G	.	.	LowGQX	END=12378367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12378368	.	A	.	.	LowGQX	END=12378396	GT	./.
chr1	12379552	.	A	.	.	LowGQX	END=12379689	GT	./.
chr1	12381864	.	A	.	.	LowGQX	END=12382053	GT	./.
chr1	12382591	.	A	.	.	LowGQX	END=12382643	GT	./.
chr1	12382644	.	T	.	.	LowGQX	END=12382675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12382676	.	A	.	.	LowGQX	.	GT	./.
chr1	12382677	.	G	.	.	LowGQX	END=12382805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12383691	.	T	.	.	LowGQX	END=12383798	GT	./.
chr1	12383799	.	G	.	.	LowGQX	END=12383850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12387703	.	A	.	.	LowGQX	END=12387771	GT	./.
chr1	12387772	.	C	.	.	LowGQX	END=12387786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12387787	.	T	.	.	LowGQX	.	GT	./.
chr1	12387788	.	A	.	.	LowGQX	END=12387805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12387806	.	G	.	.	LowGQX	.	GT	./.
chr1	12387807	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12387808	.	G	.	.	LowGQX	.	GT	./.
chr1	12387809	.	C	.	.	LowGQX	END=12387843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12387844	.	T	.	.	LowGQX	.	GT	./.
chr1	12387845	.	G	.	.	LowGQX	END=12387884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12387885	.	T	.	.	LowGQX	.	GT	./.
chr1	12387886	.	T	.	.	LowGQX	END=12387913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12389881	.	T	.	.	LowGQX	END=12389980	GT	./.
chr1	12393281	.	A	.	.	LowGQX	END=12393393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12393394	.	T	.	.	LowGQX	END=12393425	GT	./.
chr1	12395760	.	A	.	.	LowGQX	END=12395949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12398276	.	C	.	.	LowGQX	END=12398302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12398303	.	A	.	.	LowGQX	.	GT	./.
chr1	12398304	.	C	.	.	LowGQX	END=12398309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12398310	.	A	.	.	LowGQX	END=12398311	GT	./.
chr1	12398312	.	C	.	.	LowGQX	END=12398318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12398319	.	T	.	.	LowGQX	.	GT	./.
chr1	12398320	.	A	.	.	LowGQX	END=12398331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12398332	.	A	.	.	LowGQX	.	GT	./.
chr1	12398333	.	C	.	.	LowGQX	END=12398341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12398342	.	A	.	.	LowGQX	.	GT	./.
chr1	12398343	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12398344	.	C	.	.	LowGQX	.	GT	./.
chr1	12398345	.	A	.	.	LowGQX	END=12398357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12398358	.	T	.	.	LowGQX	.	GT	./.
chr1	12398359	.	A	.	.	LowGQX	END=12398375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12401835	.	A	.	.	LowGQX	END=12401944	GT	./.
chr1	12402954	.	A	.	.	LowGQX	END=12403110	GT	./.
chr1	12405429	.	A	.	.	LowGQX	END=12405568	GT	./.
chr1	12406636	.	A	.	.	LowGQX	END=12406735	GT	./.
chr1	12408878	.	A	.	.	LowGQX	END=12409032	GT	./.
chr1	12409219	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12409220	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	12409221	.	A	.	.	LowGQX	END=12409415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12409416	.	A	.	.	LowGQX	END=12409433	GT	./.
chr1	12414029	.	A	.	.	LowGQX	END=12414240	GT	./.
chr1	12414241	.	T	.	.	LowGQX	END=12414280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12415954	.	A	.	.	LowGQX	END=12415957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12415958	.	G	.	.	LowGQX	.	GT	./.
chr1	12415959	.	T	.	.	LowGQX	END=12415984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12415985	.	A	.	.	LowGQX	.	GT	./.
chr1	12415986	.	A	.	.	LowGQX	END=12416000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12416001	.	C	.	.	LowGQX	END=12416002	GT	./.
chr1	12416003	.	C	.	.	LowGQX	END=12416018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12416019	.	A	.	.	LowGQX	.	GT	./.
chr1	12416020	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12416021	.	A	.	.	LowGQX	.	GT	./.
chr1	12416022	.	T	.	.	LowGQX	END=12416038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12416039	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	12416040	.	A	.	.	LowGQX	END=12416047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12416048	.	A	.	.	LowGQX	.	GT	./.
chr1	12416049	.	A	.	.	LowGQX	END=12416054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12416055	.	G	.	.	LowGQX	.	GT	./.
chr1	12416056	.	G	.	.	LowGQX	END=12416090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12416091	.	C	.	.	LowGQX	.	GT	./.
chr1	12416092	.	A	.	.	LowGQX	END=12416149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12416453	.	A	.	.	LowGQX	END=12416583	GT	./.
chr1	12418513	.	A	.	.	LowGQX	END=12418563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12418564	.	T	.	.	LowGQX	.	GT	./.
chr1	12418565	.	G	.	.	LowGQX	END=12418568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12418569	.	T	.	.	LowGQX	.	GT	./.
chr1	12418570	.	C	.	.	LowGQX	END=12418587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12418588	.	G	.	.	LowGQX	END=12418659	GT	./.
chr1	12422774	.	A	.	.	LowGQX	END=12422908	GT	./.
chr1	12423126	.	A	.	.	LowGQX	END=12423305	GT	./.
chr1	12428521	.	A	.	.	LowGQX	END=12428526	GT	./.
chr1	12428527	.	A	.	.	LowGQX	END=12428530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428531	.	T	.	.	LowGQX	.	GT	./.
chr1	12428532	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428533	.	G	.	.	LowGQX	END=12428534	GT	./.
chr1	12428535	.	A	.	.	LowGQX	END=12428536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428537	.	A	.	.	LowGQX	.	GT	./.
chr1	12428538	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428539	.	T	.	.	LowGQX	.	GT	./.
chr1	12428540	.	G	.	.	LowGQX	END=12428541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428542	.	T	.	.	LowGQX	.	GT	./.
chr1	12428543	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428544	.	C	.	.	LowGQX	.	GT	./.
chr1	12428545	.	T	.	.	LowGQX	END=12428551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428552	.	G	.	.	LowGQX	.	GT	./.
chr1	12428553	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428554	.	G	.	.	LowGQX	.	GT	./.
chr1	12428555	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428556	.	G	.	.	LowGQX	.	GT	./.
chr1	12428557	.	G	.	.	LowGQX	END=12428560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428561	.	T	.	.	LowGQX	.	GT	./.
chr1	12428562	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428563	.	A	.	.	LowGQX	.	GT	./.
chr1	12428564	.	C	.	.	LowGQX	END=12428584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428585	.	G	.	.	LowGQX	.	GT	./.
chr1	12428586	.	G	.	.	LowGQX	END=12428587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428588	.	T	.	.	LowGQX	.	GT	./.
chr1	12428589	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428590	.	T	.	.	LowGQX	.	GT	./.
chr1	12428591	.	C	.	.	LowGQX	END=12428597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428598	.	T	.	.	LowGQX	.	GT	./.
chr1	12428599	.	G	.	.	LowGQX	END=12428600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428601	.	C	.	.	LowGQX	.	GT	./.
chr1	12428602	.	A	.	.	LowGQX	END=12428603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428604	.	A	.	.	LowGQX	.	GT	./.
chr1	12428605	.	G	.	.	LowGQX	END=12428610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428611	.	T	.	.	LowGQX	.	GT	./.
chr1	12428612	.	T	.	.	LowGQX	END=12428614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428615	.	C	.	.	LowGQX	END=12428616	GT	./.
chr1	12428617	.	C	.	.	LowGQX	END=12428619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428620	.	C	.	.	LowGQX	.	GT	./.
chr1	12428621	.	C	.	.	LowGQX	END=12428630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428631	.	T	.	.	LowGQX	END=12428632	GT	./.
chr1	12428633	.	A	.	.	LowGQX	END=12428635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12428636	.	A	.	.	LowGQX	.	GT	./.
chr1	12428637	.	C	.	.	LowGQX	END=12428648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12429520	.	A	.	.	LowGQX	END=12429759	GT	./.
chr1	12433803	.	A	.	.	LowGQX	END=12433840	GT	./.
chr1	12433841	.	C	.	.	LowGQX	END=12433843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12433844	.	G	.	.	LowGQX	.	GT	./.
chr1	12433845	.	G	.	.	LowGQX	END=12433855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12433856	.	T	.	.	LowGQX	.	GT	./.
chr1	12433857	.	G	.	.	LowGQX	END=12433859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12433860	.	G	.	.	LowGQX	.	GT	./.
chr1	12433861	.	A	.	.	LowGQX	END=12433862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12433863	.	C	.	.	LowGQX	.	GT	./.
chr1	12433864	.	T	.	.	LowGQX	END=12433869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12433870	.	T	.	.	LowGQX	END=12433873	GT	./.
chr1	12433874	.	T	.	.	LowGQX	END=12433875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12433876	.	T	.	.	LowGQX	.	GT	./.
chr1	12433877	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12433878	.	T	.	.	LowGQX	END=12433881	GT	./.
chr1	12433882	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12433883	.	C	.	.	LowGQX	.	GT	./.
chr1	12433884	.	A	.	.	LowGQX	END=12433887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12433888	.	C	.	.	LowGQX	END=12433889	GT	./.
chr1	12433890	.	C	.	.	LowGQX	END=12433896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12433897	.	T	.	.	LowGQX	.	GT	./.
chr1	12433898	.	C	.	.	LowGQX	END=12433901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12433902	.	T	.	.	LowGQX	.	GT	./.
chr1	12433903	.	T	.	.	LowGQX	END=12433908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12433909	.	A	.	.	LowGQX	END=12433910	GT	./.
chr1	12433911	.	A	.	.	LowGQX	END=12433912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12433913	.	G	.	.	LowGQX	.	GT	./.
chr1	12433914	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12433915	.	T	.	.	LowGQX	.	GT	./.
chr1	12433916	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12433917	.	A	.	.	LowGQX	END=12433918	GT	./.
chr1	12433919	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12433920	.	G	.	.	LowGQX	END=12433921	GT	./.
chr1	12433922	.	G	.	.	LowGQX	END=12433929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12433930	.	T	.	.	LowGQX	.	GT	./.
chr1	12433931	.	C	.	.	LowGQX	END=12433932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12433933	.	G	.	.	LowGQX	END=12433934	GT	./.
chr1	12433935	.	G	.	.	LowGQX	END=12433954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12433955	.	A	.	.	LowGQX	END=12433956	GT	./.
chr1	12433957	.	C	.	.	LowGQX	END=12433961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12438480	.	A	.	.	LowGQX	END=12438647	GT	./.
chr1	12439540	.	A	.	.	LowGQX	END=12439652	GT	./.
chr1	12443033	.	A	.	.	LowGQX	END=12443207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12443208	.	A	.	.	LowGQX	END=12443216	GT	./.
chr1	12445317	.	A	.	.	LowGQX	END=12445434	GT	./.
chr1	12446242	.	A	.	.	LowGQX	END=12446383	GT	./.
chr1	12446384	.	G	.	.	LowGQX	END=12446395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12460236	.	A	.	.	LowGQX	END=12460389	GT	./.
chr1	12461659	.	A	.	.	LowGQX	END=12461759	GT	./.
chr1	12463876	.	A	.	.	LowGQX	END=12463934	GT	./.
chr1	12463935	.	C	.	.	LowGQX	END=12463945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12463946	.	T	.	.	LowGQX	END=12463947	GT	./.
chr1	12463948	.	C	.	.	LowGQX	END=12463969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12463970	.	A	.	.	LowGQX	.	GT	./.
chr1	12463971	.	T	.	.	LowGQX	END=12464003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12464004	.	A	.	.	LowGQX	.	GT	./.
chr1	12464005	.	C	.	.	LowGQX	END=12464028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12469886	.	A	.	.	LowGQX	END=12469985	GT	./.
chr1	12475138	.	A	.	.	LowGQX	END=12475276	GT	./.
chr1	12476711	.	A	.	.	LowGQX	END=12476882	GT	./.
chr1	12516052	.	A	.	.	LowGQX	END=12516188	GT	./.
chr1	12520254	.	A	.	.	LowGQX	END=12520453	GT	./.
chr1	12538842	.	T	.	.	LowGQX	END=12538941	GT	./.
chr1	12557552	.	A	.	.	LowGQX	END=12557559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12557560	.	A	.	.	LowGQX	.	GT	./.
chr1	12557561	.	G	.	.	LowGQX	END=12557573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12557574	.	G	.	.	LowGQX	.	GT	./.
chr1	12557575	.	G	.	.	LowGQX	END=12557576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12557577	.	A	.	.	LowGQX	.	GT	./.
chr1	12557578	.	A	.	.	LowGQX	END=12557600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12557601	.	A	.	.	LowGQX	.	GT	./.
chr1	12557602	.	G	.	.	LowGQX	END=12557665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12557666	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	12557667	.	A	.	.	LowGQX	END=12557670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12557671	.	C	.	.	LowGQX	.	GT	./.
chr1	12557672	.	A	.	.	LowGQX	END=12557687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12566905	.	A	.	.	LowGQX	END=12567140	GT	./.
chr1	12567141	.	G	.	.	LowGQX	END=12567149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12567300	.	G	.	.	LowGQX	END=12567331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12567332	.	T	.	.	LowGQX	.	GT	./.
chr1	12567333	.	C	.	.	LowGQX	END=12567349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12567350	.	T	.	.	LowGQX	END=12567451	GT	./.
chr1	12568945	.	A	.	.	LowGQX	END=12569080	GT	./.
chr1	12628362	.	C	.	.	LowGQX	END=12628449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12628450	.	T	.	.	LowGQX	END=12628461	GT	./.
chr1	12632684	.	C	.	.	LowGQX	END=12632697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12632698	.	C	.	.	LowGQX	.	GT	./.
chr1	12632699	.	T	.	.	LowGQX	END=12632706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12632707	.	C	A	7.08	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=3.54;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,1:2:3.01:36,3,0:60:3:0.500
chr1	12632708	.	A	.	.	LowGQX	.	GT	./.
chr1	12632709	.	C	.	.	LowGQX	END=12632713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632714	.	G	.	.	LowGQX	.	GT	./.
chr1	12632715	.	T	.	.	LowGQX	END=12632716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632717	.	C	.	.	LowGQX	END=12632719	GT	./.
chr1	12632720	.	T	.	.	LowGQX	END=12632721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632722	.	C	.	.	LowGQX	.	GT	./.
chr1	12632723	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632724	.	C	.	.	LowGQX	.	GT	./.
chr1	12632725	.	T	.	.	LowGQX	END=12632726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632727	.	A	.	.	LowGQX	.	GT	./.
chr1	12632728	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632729	.	C	.	.	LowGQX	END=12632730	GT	./.
chr1	12632731	.	A	.	.	LowGQX	END=12632732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632733	.	A	.	.	LowGQX	.	GT	./.
chr1	12632734	.	G	.	.	LowGQX	END=12632738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632739	.	C	.	.	LowGQX	.	GT	./.
chr1	12632740	.	T	.	.	LowGQX	END=12632743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632744	.	C	.	.	LowGQX	END=12632746	GT	./.
chr1	12632747	.	G	.	.	LowGQX	END=12632748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632749	.	C	.	.	LowGQX	END=12632751	GT	./.
chr1	12632752	.	A	.	.	LowGQX	END=12632755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632756	.	C	.	.	LowGQX	END=12632757	GT	./.
chr1	12632758	.	T	.	.	LowGQX	END=12632762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632763	.	A	.	.	LowGQX	.	GT	./.
chr1	12632764	.	G	.	.	LowGQX	END=12632766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632767	.	A	.	.	LowGQX	END=12632769	GT	./.
chr1	12632770	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632771	.	A	.	.	LowGQX	.	GT	./.
chr1	12632772	.	G	.	.	LowGQX	END=12632773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632774	.	G	.	.	LowGQX	END=12632775	GT	./.
chr1	12632776	.	A	.	.	LowGQX	END=12632777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632778	.	G	.	.	LowGQX	END=12632779	GT	./.
chr1	12632780	.	A	.	.	LowGQX	END=12632785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632786	.	C	.	.	LowGQX	END=12632788	GT	./.
chr1	12632789	.	G	.	.	LowGQX	END=12632790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632791	.	G	.	.	LowGQX	.	GT	./.
chr1	12632792	.	A	.	.	LowGQX	END=12632795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632796	.	G	.	.	LowGQX	.	GT	./.
chr1	12632797	.	G	.	.	LowGQX	END=12632798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632799	.	G	.	.	LowGQX	.	GT	./.
chr1	12632800	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12632801	.	A	.	.	LowGQX	END=12632883	GT	./.
chr1	12638744	.	A	.	.	LowGQX	END=12638843	GT	./.
chr1	12638844	.	C	.	.	LowGQX	END=12638932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12638933	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	12638934	.	G	.	.	LowGQX	END=12638986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	12639171	.	C	.	.	LowGQX	END=12639346	GT	./.
chr1	12639347	.	G	.	.	LowGQX	END=12639442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12640386	.	C	.	.	LowGQX	END=12640682	GT	./.
chr1	12640683	.	C	.	.	LowGQX	END=12640696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12677147	.	A	.	.	LowGQX	END=12677355	GT	./.
chr1	12704564	.	A	.	.	LowGQX	END=12704735	GT	./.
chr1	12711140	.	A	.	.	LowGQX	END=12711360	GT	./.
chr1	12721730	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12721731	.	T	.	.	LowGQX	.	GT	./.
chr1	12721732	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12721733	.	C	.	.	LowGQX	END=12721735	GT	./.
chr1	12721736	.	G	.	.	LowGQX	END=12721741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12721742	.	G	.	.	LowGQX	END=12721743	GT	./.
chr1	12721744	.	G	.	.	LowGQX	END=12721750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12721751	.	T	.	.	LowGQX	END=12721755	GT	./.
chr1	12721756	.	T	.	.	LowGQX	END=12721757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12721758	.	G	.	.	LowGQX	END=12721759	GT	./.
chr1	12721760	.	T	.	.	LowGQX	END=12721762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12721763	.	T	.	.	LowGQX	.	GT	./.
chr1	12721764	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12721765	.	C	.	.	LowGQX	.	GT	./.
chr1	12721766	.	T	.	.	LowGQX	END=12721770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12721771	.	C	.	.	LowGQX	END=12721773	GT	./.
chr1	12721774	.	T	.	.	LowGQX	END=12721776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12721777	.	T	.	.	LowGQX	END=12721778	GT	./.
chr1	12721779	.	C	.	.	LowGQX	END=12721781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12721782	.	T	.	.	LowGQX	END=12721783	GT	./.
chr1	12721784	.	A	.	.	LowGQX	END=12721786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12721787	.	G	.	.	LowGQX	.	GT	./.
chr1	12721788	.	T	.	.	LowGQX	END=12721790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12721791	.	T	.	.	LowGQX	END=12721792	GT	./.
chr1	12721793	.	G	.	.	LowGQX	END=12721794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12721795	.	C	.	.	LowGQX	END=12721797	GT	./.
chr1	12721798	.	G	.	.	LowGQX	END=12721800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12721801	.	G	.	.	LowGQX	.	GT	./.
chr1	12721802	.	A	.	.	LowGQX	END=12721805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12721806	.	T	.	.	LowGQX	.	GT	./.
chr1	12721807	.	T	.	.	LowGQX	END=12721823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12721824	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	12721825	.	T	.	.	LowGQX	END=12721835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12721836	.	G	.	.	LowGQX	.	GT	./.
chr1	12721837	.	G	.	.	LowGQX	END=12721860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12721861	.	A	.	.	LowGQX	.	GT	./.
chr1	12721862	.	T	.	.	LowGQX	END=12721868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12721869	.	A	.	.	LowGQX	.	GT	./.
chr1	12721870	.	G	.	.	LowGQX	END=12721881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12721882	.	A	.	.	LowGQX	.	GT	./.
chr1	12721883	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12725970	.	A	.	.	LowGQX	END=12726304	GT	./.
chr1	12726305	.	C	.	.	LowGQX	END=12726377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12726378	.	A	.	.	LowGQX	.	GT	./.
chr1	12726379	.	G	.	.	LowGQX	END=12726418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12726419	.	C	A	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	12726420	.	C	.	.	LowGQX	END=12726421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12726422	.	A	.	.	LowGQX	.	GT	./.
chr1	12726423	.	C	.	.	LowGQX	END=12726534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12726535	.	A	.	.	LowGQX	END=12726748	GT	./.
chr1	12776296	.	C	.	.	LowGQX	END=12776395	GT	./.
chr1	12779478	.	G	.	.	LowGQX	END=12779695	GT	./.
chr1	12780867	.	A	.	.	LowGQX	END=12780966	GT	./.
chr1	12785187	.	A	.	.	LowGQX	END=12785955	GT	./.
chr1	12785956	.	G	.	.	LowGQX	END=12785965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12806377	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12806378	.	C	.	.	LowGQX	.	GT	./.
chr1	12806379	.	A	.	.	LowGQX	END=12806384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12806385	.	T	.	.	LowGQX	.	GT	./.
chr1	12806386	.	T	.	.	LowGQX	END=12806387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12806388	.	A	.	.	LowGQX	.	GT	./.
chr1	12806389	.	C	.	.	LowGQX	END=12806399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12806400	.	C	.	.	LowGQX	.	GT	./.
chr1	12806401	.	C	.	.	LowGQX	END=12806406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12806407	.	C	.	.	LowGQX	.	GT	./.
chr1	12806408	.	A	.	.	LowGQX	END=12806413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12806414	.	T	.	.	LowGQX	.	GT	./.
chr1	12806415	.	A	.	.	LowGQX	END=12806422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12806423	.	C	.	.	LowGQX	.	GT	./.
chr1	12806424	.	T	.	.	LowGQX	END=12806442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12806443	.	A	.	.	LowGQX	.	GT	./.
chr1	12806444	.	T	.	.	LowGQX	END=12806445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12806446	.	C	.	.	LowGQX	.	GT	./.
chr1	12806447	.	A	.	.	LowGQX	END=12806451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12806452	.	A	.	.	LowGQX	.	GT	./.
chr1	12806453	.	A	.	.	LowGQX	END=12806454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12806455	.	T	.	.	LowGQX	.	GT	./.
chr1	12806456	.	G	.	.	LowGQX	END=12806472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12806473	.	T	.	.	LowGQX	.	GT	./.
chr1	12806474	.	G	.	.	LowGQX	END=12806479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12806480	.	G	.	.	LowGQX	.	GT	./.
chr1	12806481	.	A	.	.	LowGQX	END=12806491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12815598	.	A	.	.	LowGQX	END=12815765	GT	./.
chr1	12819241	.	A	.	.	LowGQX	END=12819551	GT	./.
chr1	12820701	.	A	.	.	LowGQX	END=12820780	GT	./.
chr1	12820781	.	C	.	.	LowGQX	END=12820790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12820791	.	A	.	.	LowGQX	.	GT	./.
chr1	12820792	.	T	.	.	LowGQX	END=12820855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12820856	.	A	.	.	LowGQX	.	GT	./.
chr1	12820857	.	T	.	.	LowGQX	END=12820869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12820870	.	T	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	12820871	.	T	.	.	LowGQX	END=12820874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12820875	.	A	.	.	LowGQX	.	GT	./.
chr1	12820876	.	C	.	.	LowGQX	END=12820883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12820884	.	A	.	.	LowGQX	.	GT	./.
chr1	12820885	.	G	.	.	LowGQX	END=12820886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12835009	.	G	.	.	LowGQX	END=12835299	GT	./.
chr1	12835684	.	A	.	.	LowGQX	END=12836136	GT	./.
chr1	12836137	.	C	.	.	LowGQX	END=12836249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12836250	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	12836251	.	C	.	.	LowGQX	END=12836263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	12837152	.	A	.	.	LowGQX	END=12837156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12837157	.	T	.	.	LowGQX	.	GT	./.
chr1	12837158	.	C	.	.	LowGQX	END=12837175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12837176	.	A	.	.	LowGQX	END=12837744	GT	./.
chr1	12853375	.	G	.	.	LowGQX	.	GT	./.
chr1	12853376	.	G	.	.	LowGQX	END=12853377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	12853378	.	T	.	.	LowGQX	.	GT	./.
chr1	12853379	.	G	.	.	LowGQX	END=12853387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	12853388	.	G	.	.	LowGQX	.	GT	./.
chr1	12853389	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr1	12853390	.	C	.	.	LowGQX	.	GT	./.
chr1	12853391	.	C	.	.	LowGQX	END=12853402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	12853403	.	A	.	3.20	LowGQX	DP=1;MQ=25;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:25:0
chr1	12853404	.	C	.	.	LowGQX	.	GT	./.
chr1	12853405	.	T	.	.	LowGQX	END=12853414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	12853415	.	A	.	3.20	LowGQX	DP=1;MQ=25;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:25:0
chr1	12853416	.	G	.	.	LowGQX	END=12853422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	12853423	.	G	.	.	LowGQX	.	GT	./.
chr1	12853424	.	C	.	.	LowGQX	END=12853428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	12853429	.	T	.	.	LowGQX	.	GT	./.
chr1	12853430	.	G	.	.	LowGQX	END=12853455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	12853456	.	C	.	.	LowGQX	.	GT	./.
chr1	12853457	.	C	.	.	LowGQX	END=12853458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	12853459	.	T	.	.	LowGQX	.	GT	./.
chr1	12853460	.	G	.	.	LowGQX	END=12853477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	12853478	.	G	.	.	LowGQX	END=12853665	GT	./.
chr1	12854062	.	A	.	.	LowGQX	END=12854644	GT	./.
chr1	12854987	.	T	.	.	LowGQX	END=12855019	GT	./.
chr1	12855020	.	A	.	.	LowGQX	END=12855030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12855031	.	G	.	.	LowGQX	.	GT	./.
chr1	12855032	.	A	.	.	LowGQX	END=12855036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12855037	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	12855038	.	T	.	.	LowGQX	END=12855040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12855041	.	C	.	.	LowGQX	.	GT	./.
chr1	12855042	.	C	.	.	LowGQX	END=12855054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12855055	.	T	.	.	LowGQX	.	GT	./.
chr1	12855056	.	G	.	.	LowGQX	END=12855058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12855059	.	C	.	.	LowGQX	.	GT	./.
chr1	12855060	.	A	.	.	LowGQX	END=12855068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12855069	.	C	.	.	LowGQX	.	GT	./.
chr1	12855070	.	C	.	.	LowGQX	END=12855072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12855073	.	T	.	.	LowGQX	.	GT	./.
chr1	12855074	.	C	.	.	LowGQX	END=12855088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12855089	.	T	.	.	LowGQX	.	GT	./.
chr1	12855090	.	G	.	.	LowGQX	END=12855097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12855098	.	T	.	.	LowGQX	.	GT	./.
chr1	12855099	.	T	.	.	LowGQX	END=12855118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12855585	.	A	.	.	LowGQX	END=12856156	GT	./.
chr1	12884799	.	T	.	.	LowGQX	END=12884932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12884933	.	T	.	.	LowGQX	END=12885361	GT	./.
chr1	12887107	.	C	.	.	LowGQX	END=12887689	GT	./.
chr1	12888356	.	C	.	.	LowGQX	END=12888677	GT	./.
chr1	12907259	.	G	.	.	LowGQX	END=12908144	GT	./.
chr1	12918863	.	G	.	.	LowGQX	END=12919153	GT	./.
chr1	12919546	.	A	.	.	LowGQX	END=12919572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12919573	.	T	.	.	LowGQX	.	GT	./.
chr1	12919574	.	T	.	.	LowGQX	END=12919622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12919623	.	C	.	.	LowGQX	END=12920053	GT	./.
chr1	12920054	.	G	.	.	LowGQX	END=12920110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12920111	.	T	.	.	LowGQX	.	GT	./.
chr1	12920112	.	G	.	.	LowGQX	END=12920128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12921074	.	A	.	.	LowGQX	END=12921099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12921100	.	C	.	.	LowGQX	.	GT	./.
chr1	12921101	.	T	.	.	LowGQX	END=12921103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12921104	.	G	.	.	LowGQX	.	GT	./.
chr1	12921105	.	A	.	.	LowGQX	END=12921126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12921127	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	12921128	.	G	.	.	LowGQX	END=12921180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12921181	.	T	.	.	LowGQX	.	GT	./.
chr1	12921182	.	C	.	.	LowGQX	END=12921199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12921200	.	C	.	.	LowGQX	.	GT	./.
chr1	12921201	.	T	.	.	LowGQX	END=12921236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12921237	.	T	.	.	LowGQX	END=12921636	GT	./.
chr1	12939363	.	A	.	.	LowGQX	END=12939585	GT	./.
chr1	12939586	.	T	.	.	LowGQX	END=12939593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:44
chr1	12939594	.	T	.	.	LowGQX	.	GT	./.
chr1	12939595	.	G	.	.	LowGQX	END=12939600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:44
chr1	12939601	.	G	.	.	LowGQX	.	GT	./.
chr1	12939602	.	C	.	.	LowGQX	END=12939607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:44
chr1	12939608	.	C	.	.	LowGQX	.	GT	./.
chr1	12939609	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:44
chr1	12939610	.	C	.	.	LowGQX	END=12939611	GT	./.
chr1	12939612	.	A	.	.	LowGQX	END=12939613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:44
chr1	12939614	.	G	.	.	LowGQX	END=12939615	GT	./.
chr1	12939616	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:44
chr1	12939617	.	G	.	.	LowGQX	END=12939619	GT	./.
chr1	12939620	.	C	.	.	LowGQX	END=12939622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:44
chr1	12939623	.	G	.	.	LowGQX	.	GT	./.
chr1	12939624	.	C	.	.	LowGQX	END=12939628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:44
chr1	12939629	.	G	.	.	LowGQX	.	GT	./.
chr1	12939630	.	G	.	.	LowGQX	END=12939645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:44
chr1	12939646	.	T	.	.	LowGQX	.	GT	./.
chr1	12939647	.	G	.	.	LowGQX	END=12939650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:44
chr1	12939651	.	G	.	.	LowGQX	.	GT	./.
chr1	12939652	.	T	.	.	LowGQX	END=12939654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:44
chr1	12939655	.	T	.	.	LowGQX	.	GT	./.
chr1	12939656	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:44
chr1	12939657	.	A	.	.	LowGQX	END=12939658	GT	./.
chr1	12939659	.	C	.	.	LowGQX	END=12939692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:44
chr1	12939693	.	T	.	.	LowGQX	.	GT	./.
chr1	12939694	.	T	.	.	LowGQX	END=12939705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:44
chr1	12939706	.	C	.	.	LowGQX	.	GT	./.
chr1	12939707	.	T	.	.	LowGQX	END=12939715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:44
chr1	12939716	.	A	.	.	LowGQX	.	GT	./.
chr1	12939717	.	C	.	.	LowGQX	END=12939744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	12939745	.	T	.	.	LowGQX	.	GT	./.
chr1	12939746	.	G	.	.	LowGQX	END=12939764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	12939765	.	A	.	.	LowGQX	.	GT	./.
chr1	12939766	.	G	.	.	LowGQX	END=12939767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	12939768	.	A	.	.	LowGQX	.	GT	./.
chr1	12939769	.	T	.	.	LowGQX	END=12939772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	12939773	.	G	.	.	LowGQX	.	GT	./.
chr1	12939774	.	A	.	.	LowGQX	END=12939795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	12939796	.	T	.	.	LowGQX	END=12939798	GT	./.
chr1	12939799	.	G	.	.	LowGQX	END=12939802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	12939803	.	G	.	.	LowGQX	.	GT	./.
chr1	12939804	.	A	.	.	LowGQX	END=12939806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	12939807	.	C	.	.	LowGQX	END=12939931	GT	./.
chr1	12941673	.	A	.	.	LowGQX	END=12941745	GT	./.
chr1	12941746	.	C	.	.	LowGQX	END=12941747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12941748	.	T	.	.	LowGQX	.	GT	./.
chr1	12941749	.	G	.	.	LowGQX	END=12941777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	12941778	.	T	.	.	LowGQX	.	GT	./.
chr1	12941779	.	C	.	.	LowGQX	END=12941896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:49
chr1	12941897	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:42
chr1	12941898	.	A	.	.	LowGQX	.	GT	./.
chr1	12941899	.	C	.	.	LowGQX	END=12941928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:35
chr1	12941929	.	G	.	.	LowGQX	END=12941952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:32
chr1	12941953	.	G	.	.	LowGQX;LowMQ	END=12941971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:13
chr1	12941972	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	12941973	.	G	.	.	LowGQX;LowMQ	END=12942024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:13
chr1	12942025	.	C	.	.	LowGQX;LowMQ	END=12942039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:18
chr1	12942040	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	12942041	.	A	.	.	LowGQX;LowMQ	END=12942051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:18
chr1	12942052	.	G	.	32.99	LowGQX;LowMQ	DP=3;MQ=18;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3:18:3
chr1	12942053	.	A	.	.	LowGQX;LowMQ	END=12942055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:18
chr1	12942056	.	T	.	.	LowGQX	END=12942072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:22
chr1	12942073	.	G	.	.	LowGQX	.	GT	./.
chr1	12942074	.	T	.	.	LowGQX	END=12942079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:22
chr1	12942080	.	A	.	32.99	LowGQX	DP=2;MQ=35;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:35:3
chr1	12942081	.	G	.	.	LowGQX	END=12942091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:35
chr1	12942092	.	A	.	32.99	LowGQX	DP=2;MQ=35;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:35:3
chr1	12942093	.	C	.	.	LowGQX	END=12942133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:35
chr1	12942134	.	T	.	.	LowGQX	.	GT	./.
chr1	12942135	.	C	.	.	LowGQX	END=12942144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	12942145	.	T	.	.	LowGQX	.	GT	./.
chr1	12942146	.	T	.	.	LowGQX	END=12942151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	12942152	.	T	.	.	LowGQX	.	GT	./.
chr1	12942153	.	T	.	.	LowGQX	END=12942158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	12942159	.	T	.	.	LowGQX	END=12942160	GT	./.
chr1	12942161	.	G	.	.	LowGQX	END=12942178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	12942179	.	T	.	.	LowGQX	END=12942180	GT	./.
chr1	12942181	.	G	.	.	LowGQX	END=12942190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	12942191	.	T	.	.	LowGQX	.	GT	./.
chr1	12942192	.	C	.	.	LowGQX	END=12942230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	12942231	.	A	.	.	LowGQX	END=12942258	GT	./.
chr1	12942921	.	A	.	.	LowGQX	END=12943217	GT	./.
chr1	12952675	.	G	.	.	LowGQX	END=12952811	GT	./.
chr1	12952812	.	G	.	.	LowGQX;LowMQ	END=12952950	GT	./.
chr1	12952951	.	T	.	.	LowGQX	END=12953156	GT	./.
chr1	12953157	.	G	.	.	LowGQX	END=12953302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:46
chr1	12953303	.	T	.	.	LowGQX	END=12953374	GT	./.
chr1	12954404	.	C	.	.	LowGQX	END=12954792	GT	./.
chr1	12954793	.	G	.	.	LowGQX	END=12955003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	12955390	.	A	.	.	LowGQX	END=12955680	GT	./.
chr1	12977500	.	C	.	.	LowGQX	END=12977809	GT	./.
chr1	12978169	.	C	.	.	LowGQX;LowMQ	END=12978226	GT	./.
chr1	12978227	.	C	.	.	LowGQX	END=12978541	GT	./.
chr1	12978542	.	G	.	.	LowGQX;LowMQ	END=12978722	GT	./.
chr1	12978723	.	T	.	.	LowGQX	END=12978768	GT	./.
chr1	12979659	.	T	.	.	LowGQX	END=12979662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:40
chr1	12979663	.	C	.	.	LowGQX	.	GT	./.
chr1	12979664	.	T	.	.	LowGQX	END=12979666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:40
chr1	12979667	.	C	.	32.97	LowGQX	DP=3;MQ=40;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:2.99:40:3
chr1	12979668	.	C	.	.	LowGQX	END=12979684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:40
chr1	12979685	.	T	.	32.97	LowGQX	DP=3;MQ=40;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:2.99:40:3
chr1	12979686	.	C	.	.	LowGQX	END=12979697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:40
chr1	12979698	.	T	.	.	LowGQX	.	GT	./.
chr1	12979699	.	C	.	.	LowGQX	END=12979708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:40
chr1	12979709	.	G	.	35.99	LowGQX	DP=3;MQ=40;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6:40:6
chr1	12979710	.	A	.	.	LowGQX	END=12979726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:38
chr1	12979727	.	T	.	.	LowGQX	.	GT	./.
chr1	12979728	.	C	.	.	LowGQX	END=12979774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:38
chr1	12979775	.	G	.	32.97	LowGQX	DP=2;MQ=38;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:2.99:38:3
chr1	12979776	.	A	.	.	LowGQX	END=12979799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:38
chr1	12979800	.	T	.	.	LowGQX	END=12979821	GT	./.
chr1	12979822	.	C	.	.	LowGQX;LowMQ	END=12980030	GT	./.
chr1	12980031	.	T	.	.	LowGQX	END=12980238	GT	./.
chr1	12998433	.	C	.	.	LowGQX	END=12998461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	12998462	.	C	.	.	LowGQX	.	GT	./.
chr1	12998463	.	C	.	.	LowGQX	END=12998471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	12998472	.	G	.	.	LowGQX	.	GT	./.
chr1	12998473	.	C	.	.	LowGQX	END=12998474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	12998475	.	T	.	.	LowGQX	.	GT	./.
chr1	12998476	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr1	12998477	.	T	.	.	LowGQX	.	GT	./.
chr1	12998478	.	G	.	.	LowGQX	END=12998479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	12998480	.	C	.	.	LowGQX	.	GT	./.
chr1	12998481	.	A	.	.	LowGQX	END=12998506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	12998507	.	A	.	.	LowGQX	.	GT	./.
chr1	12998508	.	A	.	.	LowGQX	END=12998531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	12998532	.	G	.	.	LowGQX	.	GT	./.
chr1	12998533	.	T	.	.	LowGQX	END=12998583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	12998584	.	A	.	.	LowGQX	.	GT	./.
chr1	12998585	.	T	.	.	LowGQX	END=12998587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	12998588	.	T	.	.	LowGQX	.	GT	./.
chr1	12998589	.	C	.	.	LowGQX	END=12998604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	12998605	.	T	.	.	LowGQX	END=12998613	GT	./.
chr1	12998614	.	C	.	.	LowGQX;LowMQ	END=12998779	GT	./.
chr1	12998780	.	A	.	.	LowGQX	END=12999132	GT	./.
chr1	13000801	.	C	.	.	LowGQX	END=13001271	GT	./.
chr1	13001272	.	G	.	.	LowGQX	END=13001400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr1	13002049	.	T	.	.	LowGQX;LowMQ	END=13002259	GT	./.
chr1	13002260	.	T	.	.	LowGQX	END=13002358	GT	./.
chr1	13035530	.	T	.	.	LowGQX;LowMQ	END=13035581	GT	./.
chr1	13035582	.	C	.	.	LowGQX	END=13035839	GT	./.
chr1	13036209	.	A	.	.	LowGQX	END=13036808	GT	./.
chr1	13037795	.	T	.	.	LowGQX;LowMQ	END=13037981	GT	./.
chr1	13037982	.	T	.	.	LowGQX	END=13038107	GT	./.
chr1	13038108	.	G	.	.	LowGQX;LowMQ	END=13038370	GT	./.
chr1	13038371	.	G	.	.	LowGQX	END=13038384	GT	./.
chr1	13052725	.	T	.	.	LowGQX	END=13052750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	13052751	.	A	.	.	LowGQX	.	GT	./.
chr1	13052752	.	G	.	.	LowGQX	END=13052764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	13052765	.	C	.	.	LowGQX	END=13052774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13052775	.	C	.	.	LowGQX	.	GT	./.
chr1	13052776	.	A	.	.	LowGQX	END=13052777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13052778	.	T	.	.	LowGQX	.	GT	./.
chr1	13052779	.	C	.	.	LowGQX	END=13052788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13052789	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	13052790	.	T	.	.	LowGQX	.	GT	./.
chr1	13052791	.	C	.	.	LowGQX	END=13052816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13052817	.	T	.	.	LowGQX	.	GT	./.
chr1	13052818	.	G	.	.	LowGQX	END=13052837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13052838	.	T	.	.	LowGQX	.	GT	./.
chr1	13052839	.	T	.	.	LowGQX	END=13052870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13052871	.	C	.	.	LowGQX	.	GT	./.
chr1	13052872	.	T	.	.	LowGQX	END=13052906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13052907	.	T	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	13052908	.	G	.	.	LowGQX	END=13052911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13052912	.	G	.	.	LowGQX	END=13052998	GT	./.
chr1	13108826	.	A	.	.	LowGQX	END=13109148	GT	./.
chr1	13109149	.	G	.	.	LowGQX;LowMQ	END=13109341	GT	./.
chr1	13109342	.	T	.	.	LowGQX	END=13109405	GT	./.
chr1	13111134	.	A	.	.	LowGQX	END=13111733	GT	./.
chr1	13112382	.	G	.	.	LowGQX	END=13112681	GT	./.
chr1	13182990	.	C	.	.	LowGQX	END=13183093	GT	./.
chr1	13183094	.	T	.	.	LowGQX	END=13183129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:53
chr1	13183130	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=53;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:53:3:1.000
chr1	13183131	.	C	.	.	LowGQX	END=13183145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:53
chr1	13183146	.	C	.	.	LowGQX	END=13183664	GT	./.
chr1	13183665	.	C	.	.	LowGQX	END=13183872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	13216676	.	A	.	.	LowGQX	END=13216779	GT	./.
chr1	13216780	.	G	.	.	LowGQX;LowMQ	END=13217021	GT	./.
chr1	13217022	.	T	.	.	LowGQX	END=13217255	GT	./.
chr1	13218999	.	C	.	.	LowGQX	END=13219330	GT	./.
chr1	13219331	.	G	.	.	LowGQX	END=13219363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13219364	.	G	.	.	LowGQX	.	GT	./.
chr1	13219365	.	A	.	.	LowGQX	END=13219366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13219367	.	G	.	.	LowGQX	.	GT	./.
chr1	13219368	.	G	.	.	LowGQX	END=13219379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13219380	.	G	.	.	LowGQX	END=13219381	GT	./.
chr1	13219382	.	G	.	.	LowGQX	END=13219452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:53
chr1	13219453	.	G	.	33	LowGQX	DP=2;MQ=53;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:53:3
chr1	13219454	.	G	.	.	LowGQX	END=13219467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:52
chr1	13219468	.	G	.	36.01	LowGQX	DP=3;MQ=52;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:52:6
chr1	13219469	.	G	.	.	LowGQX	END=13219480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:52
chr1	13219481	.	T	.	36.01	LowGQX	DP=3;MQ=52;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:52:6
chr1	13219482	.	C	.	.	LowGQX	END=13219564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	13219565	.	C	.	.	LowGQX	.	GT	./.
chr1	13219566	.	T	.	.	LowGQX	END=13219574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	13219575	.	C	.	.	LowGQX	.	GT	./.
chr1	13219576	.	C	.	.	LowGQX	END=13219578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	13219579	.	C	.	.	LowGQX	.	GT	./.
chr1	13219580	.	T	.	.	LowGQX	END=13219581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	13328820	.	T	.	.	LowGQX	END=13329408	GT	./.
chr1	13330401	.	C	.	.	LowGQX	END=13330858	GT	./.
chr1	13330859	.	T	.	.	LowGQX;LowMQ	END=13331000	GT	./.
chr1	13331366	.	T	.	.	LowGQX;LowMQ	END=13331371	GT	./.
chr1	13331372	.	A	.	.	LowGQX	END=13331675	GT	./.
chr1	13364878	.	C	.	.	LowGQX	END=13364969	GT	./.
chr1	13364970	.	C	.	.	LowGQX;LowMQ	END=13365131	GT	./.
chr1	13365132	.	T	.	.	LowGQX	END=13365187	GT	./.
chr1	13365831	.	T	.	.	LowGQX	END=13366430	GT	./.
chr1	13368159	.	T	.	.	LowGQX	END=13368738	GT	./.
chr1	13386969	.	T	.	.	LowGQX	END=13387548	GT	./.
chr1	13388445	.	C	.	.	LowGQX	END=13389044	GT	./.
chr1	13389403	.	T	.	.	LowGQX	END=13389712	GT	./.
chr1	13423990	.	T	.	.	LowGQX	END=13424299	GT	./.
chr1	13424954	.	T	.	.	LowGQX	END=13425081	GT	./.
chr1	13425082	.	G	.	.	LowGQX;LowMQ	END=13425229	GT	./.
chr1	13425230	.	A	.	.	LowGQX	END=13425352	GT	./.
chr1	13425353	.	C	.	.	LowGQX;LowMQ	END=13425553	GT	./.
chr1	13427285	.	T	.	.	LowGQX	END=13427864	GT	./.
chr1	13448037	.	A	.	.	LowGQX	END=13448299	GT	./.
chr1	13448300	.	C	.	.	LowGQX;LowMQ	END=13448512	GT	./.
chr1	13448513	.	T	.	.	LowGQX	END=13448613	GT	./.
chr1	13449547	.	G	.	.	LowGQX	END=13449800	GT	./.
chr1	13449801	.	G	.	.	LowGQX;LowMQ	END=13449990	GT	./.
chr1	13449991	.	C	.	.	LowGQX	END=13450146	GT	./.
chr1	13450537	.	T	.	.	LowGQX;LowMQ	END=13450763	GT	./.
chr1	13450764	.	T	.	.	LowGQX	END=13450846	GT	./.
chr1	13474676	.	T	.	.	LowGQX	END=13475264	GT	./.
chr1	13476258	.	C	.	.	LowGQX	END=13476715	GT	./.
chr1	13476716	.	T	.	.	LowGQX;LowMQ	END=13476857	GT	./.
chr1	13477223	.	T	.	.	LowGQX	END=13477532	GT	./.
chr1	13495271	.	G	.	.	LowGQX;LowMQ	END=13495457	GT	./.
chr1	13495458	.	T	.	.	LowGQX	END=13495580	GT	./.
chr1	13495954	.	A	.	.	LowGQX	END=13496553	GT	./.
chr1	13497557	.	T	.	.	LowGQX	END=13498136	GT	./.
chr1	13521901	.	T	.	.	LowGQX	END=13522246	GT	./.
chr1	13522247	.	G	.	.	LowGQX;LowMQ	END=13522330	GT	./.
chr1	13523724	.	T	.	.	LowGQX;LowMQ	END=13523804	GT	./.
chr1	13523805	.	C	.	.	LowGQX	END=13524323	GT	./.
chr1	13526299	.	T	.	.	LowGQX	END=13526344	GT	./.
chr1	13526345	.	A	.	.	LowGQX;LowMQ	END=13526542	GT	./.
chr1	13526543	.	C	.	.	LowGQX	END=13526626	GT	./.
chr1	13526627	.	G	.	.	LowGQX;LowMQ	END=13526806	GT	./.
chr1	13526807	.	C	.	.	LowGQX	END=13526878	GT	./.
chr1	13607755	.	G	.	.	LowGQX	END=13607926	GT	./.
chr1	13607927	.	C	.	.	LowGQX;LowMQ	END=13608115	GT	./.
chr1	13608116	.	C	.	.	LowGQX	END=13608334	GT	./.
chr1	13609231	.	A	.	.	LowGQX;LowMQ	END=13609384	GT	./.
chr1	13609385	.	G	.	.	LowGQX	END=13609820	GT	./.
chr1	13610189	.	G	.	.	LowGQX	END=13610488	GT	./.
chr1	13644788	.	C	.	.	LowGQX	END=13645097	GT	./.
chr1	13645752	.	A	.	.	LowGQX	END=13646351	GT	./.
chr1	13648083	.	C	.	.	LowGQX;LowMQ	END=13648102	GT	./.
chr1	13648103	.	A	.	.	LowGQX	END=13648134	GT	./.
chr1	13648135	.	T	.	.	LowGQX;LowMQ	END=13648285	GT	./.
chr1	13648286	.	A	.	.	LowGQX	END=13648662	GT	./.
chr1	13668892	.	A	.	.	LowGQX	END=13669154	GT	./.
chr1	13669155	.	C	.	.	LowGQX;LowMQ	END=13669401	GT	./.
chr1	13669402	.	T	.	.	LowGQX	END=13669441	GT	./.
chr1	13669442	.	C	.	.	LowGQX;LowMQ	END=13669471	GT	./.
chr1	13670403	.	A	.	.	LowGQX	END=13670663	GT	./.
chr1	13670664	.	C	.	.	LowGQX;LowMQ	END=13670868	GT	./.
chr1	13670869	.	A	.	.	LowGQX	END=13671002	GT	./.
chr1	13671392	.	T	.	.	LowGQX	END=13671701	GT	./.
chr1	13695512	.	T	.	.	LowGQX;LowMQ	END=13695535	GT	./.
chr1	13695536	.	T	.	.	LowGQX	END=13696042	GT	./.
chr1	13696043	.	C	.	.	LowGQX;LowMQ	END=13696100	GT	./.
chr1	13697094	.	C	.	.	LowGQX	END=13697603	GT	./.
chr1	13697604	.	G	.	.	LowGQX;LowMQ	END=13697693	GT	./.
chr1	13698059	.	T	.	.	LowGQX	END=13698358	GT	./.
chr1	13716105	.	G	.	.	LowGQX	END=13716282	GT	./.
chr1	13716283	.	G	.	.	LowGQX;LowMQ	END=13716414	GT	./.
chr1	13716788	.	A	.	.	LowGQX	END=13717114	GT	./.
chr1	13717115	.	G	.	.	LowGQX;LowMQ	END=13717293	GT	./.
chr1	13717294	.	T	.	.	LowGQX	END=13717387	GT	./.
chr1	13718391	.	T	.	.	LowGQX	END=13718970	GT	./.
chr1	13742799	.	C	.	.	LowGQX	END=13743108	GT	./.
chr1	13744584	.	T	.	.	LowGQX	END=13745183	GT	./.
chr1	13747159	.	T	.	.	LowGQX	END=13747738	GT	./.
chr1	13802313	.	C	.	.	LowGQX	END=13802567	GT	./.
chr1	13839457	.	C	.	.	LowGQX	END=13839522	GT	./.
chr1	13839523	.	A	.	.	LowGQX	END=13839544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13839545	.	G	.	.	LowGQX	.	GT	./.
chr1	13839546	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13839547	.	A	.	.	LowGQX	.	GT	./.
chr1	13839548	.	G	.	.	LowGQX	END=13839601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13839602	.	T	.	.	LowGQX	.	GT	./.
chr1	13839603	.	G	.	.	LowGQX	END=13839612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13839613	.	A	.	.	LowGQX	.	GT	./.
chr1	13839614	.	G	.	.	LowGQX	END=13839621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13839622	.	A	.	.	LowGQX	.	GT	./.
chr1	13839623	.	C	.	.	LowGQX	END=13839626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13839627	.	C	.	.	LowGQX	.	GT	./.
chr1	13839628	.	A	.	.	LowGQX	END=13839645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13839646	.	A	.	.	LowGQX	.	GT	./.
chr1	13839647	.	A	.	.	LowGQX	END=13839648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13839649	.	G	.	.	LowGQX	.	GT	./.
chr1	13839650	.	C	.	.	LowGQX	END=13839666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13839667	.	A	.	.	LowGQX	.	GT	./.
chr1	13839668	.	C	.	.	LowGQX	END=13839673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13839674	.	T	.	.	LowGQX	END=13839687	GT	./.
chr1	13839688	.	C	.	.	LowGQX	END=13839691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13839692	.	G	.	.	LowGQX	.	GT	./.
chr1	13839693	.	C	.	.	LowGQX	END=13839694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13839695	.	T	.	.	LowGQX	.	GT	./.
chr1	13839696	.	C	.	.	LowGQX	END=13839706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13839707	.	C	.	.	LowGQX	.	GT	./.
chr1	13839708	.	G	.	.	LowGQX	END=13839715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13839716	.	G	.	.	LowGQX	.	GT	./.
chr1	13839717	.	G	.	.	LowGQX	END=13839719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13839720	.	G	.	.	LowGQX	.	GT	./.
chr1	13839721	.	G	.	.	LowGQX	END=13839725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13839726	.	G	.	.	LowGQX	.	GT	./.
chr1	13839727	.	G	.	.	LowGQX	END=13839838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	13839839	.	A	.	.	LowGQX	END=13840091	GT	./.
chr1	13910299	.	A	.	.	LowGQX	END=13910597	GT	./.
chr1	13910608	.	G	.	.	LowGQX	END=13910707	GT	./.
chr1	13912052	.	A	.	.	LowGQX	END=13912151	GT	./.
chr1	13922278	.	C	.	.	LowGQX	END=13922377	GT	./.
chr1	13933666	.	A	.	.	LowGQX	END=13933803	GT	./.
chr1	13936880	.	A	.	.	LowGQX	END=13937013	GT	./.
chr1	13940100	.	G	.	.	LowGQX	END=13940251	GT	./.
chr1	13940793	.	A	.	.	LowGQX	END=13940908	GT	./.
chr1	13941252	.	A	.	.	LowGQX	END=13941411	GT	./.
chr1	13942354	.	C	.	.	LowGQX	END=13942453	GT	./.
chr1	14042056	.	T	.	.	PASS	END=14042110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	14042111	.	T	.	.	PASS	END=14042153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	14042154	.	T	.	.	PASS	END=14042155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	14049294	.	A	.	.	LowGQX	END=14049393	GT	./.
chr1	14057493	.	A	.	.	PASS	END=14057494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	14057495	.	A	.	.	PASS	END=14057498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	14057499	.	C	.	.	PASS	END=14057510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	14057511	.	T	.	.	PASS	END=14057532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	14057533	.	T	.	.	PASS	END=14057550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	14057551	.	G	.	.	PASS	END=14057598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	14057599	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:76:60
chr1	14057600	.	A	.	.	PASS	END=14057614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	14059272	.	A	.	.	PASS	END=14059358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	14059359	.	T	.	.	PASS	END=14059371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	14059372	.	T	.	.	PASS	END=14059418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	14059419	.	A	.	.	PASS	END=14059431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	14068498	.	A	.	.	PASS	END=14068518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	14068519	.	G	.	.	PASS	END=14068585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	14068586	.	C	.	.	PASS	END=14068654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	14075804	.	C	.	.	PASS	END=14075805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	14075806	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:0:60
chr1	14075807	.	A	.	.	PASS	END=14075808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chr1	14075809	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:27:60
chr1	14075810	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:33:60
chr1	14075811	.	C	.	.	PASS	END=14075812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	14075813	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:1:60
chr1	14075814	.	C	.	.	PASS	END=14075815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	14075816	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:30:60
chr1	14075817	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:51:60
chr1	14075818	.	T	.	.	LowGQX	END=14075820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:21:60
chr1	14075821	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:42:60
chr1	14075822	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:27:60
chr1	14075823	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:30:60
chr1	14075824	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:57:60
chr1	14075825	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:33:60
chr1	14075826	.	G	.	.	PASS	END=14075827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	14075828	.	C	.	.	PASS	END=14075829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	14075830	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:30:60
chr1	14075831	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:54:60
chr1	14075832	.	C	.	.	PASS	END=14075834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr1	14075835	.	T	.	51.06	LowGQX	DP=21;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:16:21:21.07:60:21
chr1	14075836	.	T	.	.	PASS	END=14075838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:36:60
chr1	14075839	.	C	.	.	PASS	END=14075840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:30:60
chr1	14075841	.	C	.	.	PASS	END=14075842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:42:60
chr1	14075843	.	T	.	.	PASS	END=14075847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:45:60
chr1	14075848	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:42:60
chr1	14075849	.	C	.	.	PASS	END=14075857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:51:60
chr1	14075858	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:39:60
chr1	14075859	.	A	.	.	PASS	END=14075877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:60
chr1	14075878	.	T	.	.	PASS	END=14075882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:48:60
chr1	14075883	.	G	.	.	PASS	END=14075886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:57:60
chr1	14075887	.	G	.	.	PASS	END=14075897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:63:60
chr1	14075898	.	G	.	.	PASS	END=14075953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:72:60
chr1	14075954	.	C	.	.	PASS	END=14075974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr1	14075975	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:30:60
chr1	14075976	.	C	.	.	PASS	END=14075991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	14075992	.	C	.	.	PASS	END=14075999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	14076000	.	C	.	.	PASS	END=14076021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	14076022	.	C	.	.	PASS	END=14076023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	14096772	.	G	.	.	LowGQX	END=14096831	GT	./.
chr1	14096832	.	G	.	.	LowGQX	END=14096871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	14099571	.	A	.	.	PASS	END=14099579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	14099580	.	A	.	.	PASS	END=14099685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	14104911	.	A	.	.	PASS	END=14104968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	14104969	.	C	.	.	PASS	END=14105156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	14105157	.	G	.	.	PASS	END=14105280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	14105281	.	C	.	.	PASS	END=14105339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	14105340	.	C	.	.	PASS	END=14105477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	14105478	.	G	.	.	PASS	END=14105537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	14105538	.	A	.	.	PASS	END=14105668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:256:99:60
chr1	14105669	.	C	.	.	PASS	END=14105778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:320:99:60
chr1	14105779	.	A	.	.	PASS	END=14105836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:327:99:60
chr1	14105837	.	G	.	.	PASS	END=14106044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:263:99:60
chr1	14106045	.	G	.	.	PASS	END=14106195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:280:99:60
chr1	14106196	.	G	.	.	PASS	END=14106295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	14106296	.	T	.	.	PASS	END=14106389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	14106390	.	A	.	.	PASS	END=14106465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	14106466	.	T	.	.	PASS	END=14106616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	14106617	.	A	.	.	PASS	END=14106777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr1	14106778	.	G	.	.	PASS	END=14107052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:282:99:60
chr1	14107053	.	T	.	.	PASS	END=14107135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	14107136	.	C	.	.	PASS	END=14107186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	14107187	.	T	.	.	PASS	END=14107210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	14107211	.	C	.	.	PASS	END=14107234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	14107235	.	T	.	.	PASS	END=14107302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	14107303	.	C	.	.	PASS	END=14107379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	14107380	.	T	.	.	PASS	END=14107557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	14107558	.	A	.	.	PASS	END=14107907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	14107908	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:124:0:60
chr1	14107909	.	C	.	.	PASS	END=14107911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	14107912	.	C	G	117.25	LowQD;SB	BaseQRankSum=0.015;DP=120;Dels=0.00;FS=23.431;HRun=1;HaplotypeScore=15.2029;MQ=60;MQ0=0;MQRankSum=-0.912;QD=0.98;ReadPosRankSum=3.702;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:101,17:120:99:147,0,2789:60:99:0.144
chr1	14107913	.	A	T	70.75	LowQD;SB	BaseQRankSum=-0.004;DP=115;Dels=0.00;FS=21.447;HRun=0;HaplotypeScore=15.2029;MQ=60;MQ0=0;MQRankSum=-0.214;QD=0.62;ReadPosRankSum=3.681;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:99,16:115:99:101,0,2780:60:71:0.139
chr1	14107914	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:119:99:60
chr1	14107915	.	C	G	162.57	LowQD;SB	BaseQRankSum=1.356;DP=111;Dels=0.00;FS=27.807;HRun=1;HaplotypeScore=13.2569;MQ=60;MQ0=0;MQRankSum=-0.232;QD=1.46;ReadPosRankSum=3.440;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:93,17:111:99:193,0,2682:60:99:0.155
chr1	14107916	.	A	.	.	PASS	END=14107928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	14107929	.	C	A	280.52	SB	BaseQRankSum=0.587;DP=96;Dels=0.00;FS=45.699;HRun=0;HaplotypeScore=14.4045;MQ=60;MQ0=0;MQRankSum=0.934;QD=2.92;ReadPosRankSum=1.967;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:78,18:96:99:311,0,2075:60:99:0.188
chr1	14107930	.	C	.	.	PASS	END=14107995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	14107996	.	G	.	.	PASS	END=14108018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	14108019	.	G	.	.	PASS	END=14108062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	14108063	.	A	.	.	PASS	END=14108216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	14108217	.	C	.	.	PASS	END=14108369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr1	14108370	.	C	.	.	PASS	END=14108463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	14108464	.	A	.	.	PASS	END=14108571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	14108572	.	C	.	.	PASS	END=14108721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	14108722	.	T	.	.	PASS	END=14108776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	14108777	.	A	.	.	PASS	END=14108839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	14108840	.	C	.	.	PASS	END=14108983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	14108984	.	C	.	.	PASS	END=14109053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	14109054	.	G	.	.	PASS	END=14109140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	14109141	.	A	.	.	PASS	END=14109271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	14109272	.	T	.	.	PASS	END=14109328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	14109332	.	C	.	.	PASS	END=14109340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	14109341	.	T	.	.	PASS	END=14109374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:96:60
chr1	14109375	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:51:60
chr1	14109376	.	C	.	.	PASS	END=14109381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr1	14109382	.	T	.	.	PASS	END=14109385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:63:60
chr1	14109386	.	G	.	.	PASS	END=14109387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	14109388	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:45:60
chr1	14109389	.	G	.	.	PASS	END=14109390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	14109391	.	T	.	.	PASS	END=14109395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	14109396	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:45:60
chr1	14109397	.	G	.	.	PASS	END=14109398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:60:60
chr1	14109399	.	T	.	.	PASS	END=14109400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	14109401	.	C	.	26.96	LowGQX	DP=35;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:23:35:1.75:60:2
chr1	14109402	.	T	.	.	PASS	END=14109403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	14109404	.	G	.	69.07	PASS	DP=35;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:28:35:39.08:60:39
chr1	14109405	.	T	.	.	PASS	END=14109406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	14109407	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:54:60
chr1	14109408	.	C	.	17.47	LowGQX	DP=36;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:27:34:0.23:60:0
chr1	14109409	.	T	.	96.16	PASS	DP=41;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:31:33:66.16:59:66
chr1	14109410	.	T	.	.	PASS	END=14109426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:59
chr1	14109427	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:42:18:59
chr1	14109428	.	C	.	.	PASS	END=14109443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:59
chr1	14109444	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:53:60
chr1	14109445	.	T	.	.	PASS	END=14109458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	14109459	.	A	.	.	PASS	END=14109462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	14109463	.	C	.	.	PASS	END=14109469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	14109470	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:15:60
chr1	14109471	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:57:60
chr1	14109472	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:33:60
chr1	14109473	.	C	.	.	PASS	END=14109485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	14109645	.	C	.	.	LowGQX	END=14109663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	14109664	.	T	.	.	LowGQX	END=14109709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	14109710	.	G	.	.	LowGQX	END=14109744	GT	./.
chr1	14112967	.	T	.	.	PASS	END=14113037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	14113038	.	A	.	.	PASS	END=14113066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	14142920	.	A	.	.	PASS	END=14142955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	14142956	.	C	.	.	PASS	END=14142981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	14142982	.	G	.	.	PASS	END=14143002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	14143003	.	A	G	3091.22	PASS	DP=121;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=10.4357;MQ=60;MQ0=0;QD=25.55;SB=-1925.82	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,121:121:99:3124,232,0:60:99:1.000
chr1	14143004	.	G	.	.	PASS	END=14143065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	14149617	.	C	.	.	PASS	END=14149621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	14149622	.	T	C	3868.69	PASS	DP=148;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=7.5754;MQ=60;MQ0=0;QD=26.14;SB=-1974.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,147:148:99:3869,289,0:60:99:1.000
chr1	14149623	.	G	.	.	PASS	END=14149716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	14220130	.	C	.	.	LowGQX	END=14220251	GT	./.
chr1	14506929	.	G	.	.	LowGQX	END=14507087	GT	./.
chr1	14925422	.	C	.	.	LowGQX	END=14925735	GT	./.
chr1	15250788	.	G	.	.	LowGQX	END=15251137	GT	./.
chr1	15287168	.	C	.	.	LowGQX	END=15287363	GT	./.
chr1	15287364	.	C	.	.	LowGQX	END=15287373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15361243	.	A	.	.	LowGQX	END=15361245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15361246	.	C	.	.	LowGQX	.	GT	./.
chr1	15361247	.	A	.	.	LowGQX	END=15361249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15361250	.	A	.	.	LowGQX	.	GT	./.
chr1	15361251	.	A	.	.	LowGQX	END=15361252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15361253	.	G	.	.	LowGQX	.	GT	./.
chr1	15361254	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15361255	.	T	.	.	LowGQX	END=15361256	GT	./.
chr1	15361257	.	A	.	.	LowGQX	END=15361267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15361268	.	T	.	.	LowGQX	.	GT	./.
chr1	15361269	.	T	.	.	LowGQX	END=15361288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15361289	.	C	.	.	LowGQX	.	GT	./.
chr1	15361290	.	T	.	.	LowGQX	END=15361294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15361295	.	A	.	.	LowGQX	END=15361296	GT	./.
chr1	15361297	.	C	.	.	LowGQX	END=15361299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15361300	.	G	.	.	LowGQX	.	GT	./.
chr1	15361301	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15361302	.	T	.	.	LowGQX	.	GT	./.
chr1	15361303	.	G	.	.	LowGQX	END=15361316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15361317	.	C	.	.	LowGQX	END=15361318	GT	./.
chr1	15361319	.	A	.	.	LowGQX	END=15361323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15361324	.	G	.	.	LowGQX	.	GT	./.
chr1	15361325	.	G	.	.	LowGQX	END=15361328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15361329	.	G	.	.	LowGQX	END=15361330	GT	./.
chr1	15361331	.	C	.	.	LowGQX	END=15361332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15361333	.	C	.	.	LowGQX	.	GT	./.
chr1	15361334	.	G	.	.	LowGQX	END=15361339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15361340	.	C	.	.	LowGQX	.	GT	./.
chr1	15361341	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15361342	.	G	.	.	LowGQX	.	GT	./.
chr1	15361343	.	C	.	.	LowGQX	END=15361378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15361379	.	A	.	.	LowGQX	.	GT	./.
chr1	15361380	.	A	.	.	LowGQX	END=15361383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15370483	.	A	.	.	LowGQX	END=15370657	GT	./.
chr1	15382585	.	A	.	.	LowGQX	END=15382778	GT	./.
chr1	15386666	.	A	.	.	LowGQX	END=15386800	GT	./.
chr1	15390044	.	C	.	.	LowGQX	END=15390143	GT	./.
chr1	15392124	.	A	.	.	LowGQX	END=15392295	GT	./.
chr1	15420675	.	G	.	.	LowGQX	END=15420780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15420781	.	T	.	.	LowGQX	END=15420881	GT	./.
chr1	15421310	.	G	.	.	LowGQX	END=15421429	GT	./.
chr1	15428038	.	G	.	.	LowGQX	END=15428099	GT	./.
chr1	15428100	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15428101	.	G	.	.	LowGQX	.	GT	./.
chr1	15428102	.	C	.	.	LowGQX	END=15428103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15428104	.	T	.	.	LowGQX	.	GT	./.
chr1	15428105	.	G	.	.	LowGQX	END=15428107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15428108	.	C	.	.	LowGQX	.	GT	./.
chr1	15428109	.	C	.	.	LowGQX	END=15428124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15428125	.	T	.	.	LowGQX	.	GT	./.
chr1	15428126	.	T	.	.	LowGQX	END=15428132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15428133	.	C	.	.	LowGQX	.	GT	./.
chr1	15428134	.	A	.	.	LowGQX	END=15428139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15428140	.	T	.	.	LowGQX	END=15428141	GT	./.
chr1	15428142	.	G	.	.	LowGQX	END=15428164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15428165	.	G	.	.	LowGQX	.	GT	./.
chr1	15428166	.	A	.	.	LowGQX	END=15428195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15428196	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	15428197	.	T	.	.	LowGQX	END=15428200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15428201	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	15428202	.	A	.	.	LowGQX	END=15428203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15428204	.	G	.	.	LowGQX	.	GT	./.
chr1	15428205	.	A	.	.	LowGQX	END=15428209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15428210	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	15428211	.	C	.	.	LowGQX	END=15428217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15428218	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	15428219	.	C	.	.	LowGQX	END=15428254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15428255	.	G	.	.	LowGQX	.	GT	./.
chr1	15428256	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15428257	.	A	.	.	LowGQX	.	GT	./.
chr1	15428258	.	C	.	.	LowGQX	END=15428265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15428266	.	G	.	.	LowGQX	.	GT	./.
chr1	15428267	.	G	.	.	LowGQX	END=15428268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15428269	.	A	.	.	LowGQX	.	GT	./.
chr1	15428270	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15429854	.	G	.	.	LowGQX	END=15429956	GT	./.
chr1	15430518	.	G	.	.	LowGQX	END=15430655	GT	./.
chr1	15430656	.	G	.	.	LowGQX	END=15430685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15438922	.	G	.	.	LowGQX	END=15439037	GT	./.
chr1	15440966	.	G	.	.	LowGQX	END=15441131	GT	./.
chr1	15490839	.	T	.	.	LowGQX	END=15490957	GT	./.
chr1	15494990	.	A	.	.	LowGQX	END=15495191	GT	./.
chr1	15495192	.	G	.	.	LowGQX	END=15495273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15497676	.	C	.	.	LowGQX	END=15497678	GT	./.
chr1	15497679	.	G	.	.	LowGQX	END=15497726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15497727	.	T	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	15497728	.	C	.	.	LowGQX	END=15497775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15541582	.	A	.	.	LowGQX	.	GT	./.
chr1	15541583	.	C	.	.	LowGQX	END=15541585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15541586	.	G	.	.	LowGQX	.	GT	./.
chr1	15541587	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15541588	.	T	.	.	LowGQX	END=15541590	GT	./.
chr1	15541591	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15541592	.	C	.	.	LowGQX	.	GT	./.
chr1	15541593	.	C	.	.	LowGQX	END=15541601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15541602	.	G	.	.	LowGQX	.	GT	./.
chr1	15541603	.	C	.	.	LowGQX	END=15541608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15541609	.	G	.	.	LowGQX	END=15541617	GT	./.
chr1	15541618	.	A	.	.	LowGQX	END=15541678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15541679	.	C	.	.	LowGQX	.	GT	./.
chr1	15541680	.	C	.	.	LowGQX	END=15541735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15541736	.	C	.	.	LowGQX	END=15541779	GT	./.
chr1	15541780	.	C	.	.	LowGQX	END=15541803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15541804	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	15541805	.	G	.	.	LowGQX	END=15541806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15541807	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	15541808	.	G	.	.	LowGQX	END=15541818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15541819	.	T	.	.	LowGQX	.	GT	./.
chr1	15541820	.	T	.	.	LowGQX	END=15541823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15541824	.	A	.	.	LowGQX	.	GT	./.
chr1	15541825	.	T	.	.	LowGQX	END=15541838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15541839	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	15541840	.	G	.	.	LowGQX	END=15541843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15541844	.	T	.	.	LowGQX	.	GT	./.
chr1	15541845	.	A	.	.	LowGQX	END=15541847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15541848	.	A	.	.	LowGQX	.	GT	./.
chr1	15541849	.	G	.	.	LowGQX	END=15541851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15541852	.	A	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	15541853	.	G	.	.	LowGQX	END=15541854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15541855	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	15541856	.	G	.	.	LowGQX	END=15541869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15541870	.	A	.	.	LowGQX	.	GT	./.
chr1	15541871	.	C	.	.	LowGQX	END=15541887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15541888	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	15541889	.	C	.	.	LowGQX	END=15541908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15541909	.	A	.	.	LowGQX	.	GT	./.
chr1	15541910	.	C	.	.	LowGQX	END=15541929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15545820	.	A	.	.	LowGQX	END=15546241	GT	./.
chr1	15573776	.	G	.	.	LowGQX	END=15573934	GT	./.
chr1	15578267	.	G	.	.	LowGQX	END=15578373	GT	./.
chr1	15598818	.	G	.	.	LowGQX	END=15599025	GT	./.
chr1	15615894	.	G	.	.	LowGQX	END=15616031	GT	./.
chr1	15616032	.	G	.	.	LowGQX	END=15616039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15616040	.	C	.	.	LowGQX	END=15616041	GT	./.
chr1	15616042	.	C	.	.	LowGQX	END=15616043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15616044	.	G	.	.	LowGQX	END=15616046	GT	./.
chr1	15616047	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15616048	.	T	.	.	LowGQX	.	GT	./.
chr1	15616049	.	T	.	.	LowGQX	END=15616051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15616052	.	C	.	.	LowGQX	.	GT	./.
chr1	15616053	.	C	.	.	LowGQX	END=15616058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15616059	.	C	.	.	LowGQX	.	GT	./.
chr1	15616060	.	A	.	.	LowGQX	END=15616068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15616069	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	15616070	.	T	.	.	LowGQX	END=15616078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15616079	.	C	.	.	LowGQX	.	GT	./.
chr1	15616080	.	C	.	.	LowGQX	END=15616086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15616087	.	C	.	.	LowGQX	.	GT	./.
chr1	15616088	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15616089	.	G	.	.	LowGQX	.	GT	./.
chr1	15616090	.	C	.	.	LowGQX	END=15616093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15616094	.	T	.	.	LowGQX	.	GT	./.
chr1	15616095	.	G	.	.	LowGQX	END=15616096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15616097	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	15616098	.	C	.	.	LowGQX	.	GT	./.
chr1	15616099	.	G	.	.	LowGQX	END=15616100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15616101	.	C	.	.	LowGQX	.	GT	./.
chr1	15616102	.	A	.	.	LowGQX	END=15616117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15616118	.	C	.	.	LowGQX	.	GT	./.
chr1	15616119	.	G	.	.	LowGQX	END=15616126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15616127	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	15616128	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15616129	.	G	.	.	LowGQX	.	GT	./.
chr1	15616130	.	A	.	.	LowGQX	END=15616132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15616133	.	A	.	.	LowGQX	.	GT	./.
chr1	15616134	.	C	.	.	LowGQX	END=15616138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15616139	.	G	A	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	15616140	.	C	.	.	LowGQX	END=15616162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15623095	.	A	.	.	LowGQX	END=15623289	GT	./.
chr1	15627700	.	G	.	.	LowGQX	END=15627937	GT	./.
chr1	15632177	.	G	.	.	LowGQX	END=15632212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15632213	.	G	.	.	LowGQX	.	GT	./.
chr1	15632214	.	T	.	.	LowGQX	END=15632233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15632234	.	G	.	.	LowGQX	END=15632235	GT	./.
chr1	15632236	.	A	.	.	LowGQX	END=15632245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15632246	.	G	.	.	LowGQX	.	GT	./.
chr1	15632247	.	C	.	.	LowGQX	END=15632278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15632279	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	15632280	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	15632281	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	15632282	.	C	.	.	LowGQX	END=15632304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15632305	.	C	.	.	LowGQX	.	GT	./.
chr1	15632306	.	A	.	.	LowGQX	END=15632322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15632323	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	15632324	.	A	.	.	LowGQX	END=15632336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15635108	.	G	.	.	LowGQX	END=15635152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15635153	.	C	.	.	LowGQX	END=15635232	GT	./.
chr1	15639552	.	G	.	.	LowGQX	END=15639560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15639561	.	T	.	.	LowGQX	.	GT	./.
chr1	15639562	.	C	.	.	LowGQX	END=15639616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15639617	.	A	.	.	LowGQX	END=15639683	GT	./.
chr1	15642869	.	C	.	.	LowGQX	END=15642968	GT	./.
chr1	15644319	.	G	.	.	LowGQX	END=15644424	GT	./.
chr1	15650947	.	G	.	.	LowGQX	END=15650968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15650969	.	G	T	9.30	LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:30.11:39,0,30:60:9:0.667
chr1	15650970	.	A	.	.	LowGQX	END=15651055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	15653547	.	T	.	.	LowGQX	END=15653646	GT	./.
chr1	15654772	.	G	.	.	LowGQX	END=15654925	GT	./.
chr1	15655841	.	G	.	.	LowGQX	END=15656072	GT	./.
chr1	15665963	.	T	.	.	LowGQX	END=15666062	GT	./.
chr1	15668231	.	G	.	.	LowGQX	END=15668266	GT	./.
chr1	15668267	.	T	.	.	LowGQX	END=15668270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15668271	.	C	.	.	LowGQX	.	GT	./.
chr1	15668272	.	T	.	.	LowGQX	END=15668274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15668275	.	A	.	.	LowGQX	.	GT	./.
chr1	15668276	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15668277	.	G	.	.	LowGQX	.	GT	./.
chr1	15668278	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15668279	.	A	.	.	LowGQX	.	GT	./.
chr1	15668280	.	A	.	.	LowGQX	END=15668285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15668286	.	C	.	.	LowGQX	.	GT	./.
chr1	15668287	.	G	.	.	LowGQX	END=15668291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15668292	.	C	.	.	LowGQX	.	GT	./.
chr1	15668293	.	A	.	.	LowGQX	END=15668316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15668317	.	A	.	.	LowGQX	.	GT	./.
chr1	15668318	.	C	.	.	LowGQX	END=15668366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15668367	.	C	.	.	LowGQX	.	GT	./.
chr1	15668368	.	T	.	.	LowGQX	END=15668389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15671578	.	G	.	.	LowGQX	END=15671686	GT	./.
chr1	15671911	.	G	.	.	LowGQX	END=15672019	GT	./.
chr1	15675537	.	G	.	.	LowGQX	END=15675640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15675641	.	A	.	.	LowGQX	.	GT	./.
chr1	15675642	.	G	.	.	LowGQX	END=15675645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15679372	.	G	.	.	LowGQX	END=15679480	GT	./.
chr1	15684605	.	G	.	.	LowGQX	END=15684794	GT	./.
chr1	15686973	.	G	.	.	LowGQX	END=15687199	GT	./.
chr1	15689130	.	T	.	.	LowGQX	END=15689229	GT	./.
chr1	15690218	.	T	.	.	LowGQX	END=15690317	GT	./.
chr1	15692322	.	G	.	.	LowGQX	END=15692429	GT	./.
chr1	15693958	.	G	.	.	LowGQX	END=15694118	GT	./.
chr1	15695865	.	G	.	.	LowGQX	END=15695998	GT	./.
chr1	15700997	.	G	.	.	LowGQX	END=15701127	GT	./.
chr1	15702098	.	G	.	.	LowGQX	END=15702226	GT	./.
chr1	15707195	.	A	.	.	LowGQX	END=15707269	GT	./.
chr1	15707270	.	C	.	.	LowGQX	END=15707279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15707280	.	C	.	.	LowGQX	.	GT	./.
chr1	15707281	.	A	.	.	LowGQX	END=15707294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15707726	.	G	.	.	LowGQX	END=15707947	GT	./.
chr1	15708523	.	G	.	.	LowGQX	END=15708689	GT	./.
chr1	15709604	.	A	.	.	LowGQX	END=15709703	GT	./.
chr1	15710302	.	G	.	.	LowGQX	END=15710409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15710410	.	T	.	.	LowGQX	END=15710426	GT	./.
chr1	15714537	.	T	.	.	LowGQX	END=15714636	GT	./.
chr1	15714749	.	C	.	.	LowGQX	END=15714908	GT	./.
chr1	15717683	.	T	.	.	LowGQX	END=15717782	GT	./.
chr1	15723792	.	G	.	.	LowGQX	END=15723902	GT	./.
chr1	15723903	.	G	.	.	LowGQX	END=15723909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15736466	.	C	.	.	LowGQX	END=15736472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15736473	.	C	.	.	LowGQX	END=15736474	GT	./.
chr1	15736475	.	C	.	.	LowGQX	END=15736479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15736480	.	G	.	.	LowGQX	.	GT	./.
chr1	15736481	.	A	.	.	LowGQX	END=15736482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15736483	.	C	.	.	LowGQX	.	GT	./.
chr1	15736484	.	T	.	.	LowGQX	END=15736532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15736533	.	C	.	.	LowGQX	.	GT	./.
chr1	15736534	.	G	.	.	LowGQX	END=15736539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15736540	.	C	.	.	LowGQX	END=15736541	GT	./.
chr1	15736542	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15736543	.	G	.	.	LowGQX	.	GT	./.
chr1	15736544	.	A	.	.	LowGQX	END=15736548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15736549	.	C	.	.	LowGQX	.	GT	./.
chr1	15736550	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15736551	.	C	.	.	LowGQX	.	GT	./.
chr1	15736552	.	G	.	.	LowGQX	END=15736554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15736555	.	C	.	.	LowGQX	END=15736557	GT	./.
chr1	15736558	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15736559	.	A	.	.	LowGQX	.	GT	./.
chr1	15736560	.	C	.	.	LowGQX	END=15736561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15736562	.	G	.	.	LowGQX	END=15736564	GT	./.
chr1	15736565	.	C	.	.	LowGQX	END=15736570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15736571	.	C	.	.	LowGQX	.	GT	./.
chr1	15736572	.	G	.	.	LowGQX	END=15736573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15736574	.	C	.	.	LowGQX	.	GT	./.
chr1	15736575	.	G	.	.	LowGQX	END=15736597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15736598	.	C	.	.	LowGQX	END=15736785	GT	./.
chr1	15752335	.	T	.	.	LowGQX	END=15752516	GT	./.
chr1	15753644	.	A	.	.	LowGQX	END=15753782	GT	./.
chr1	15754393	.	G	.	.	LowGQX	END=15754505	GT	./.
chr1	15755087	.	A	.	.	LowGQX	END=15755159	GT	./.
chr1	15755160	.	G	.	.	LowGQX	END=15755208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15755209	.	A	.	.	LowGQX	END=15755210	GT	./.
chr1	15755211	.	C	.	.	LowGQX	END=15755222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15764891	.	A	.	.	PASS	END=15764904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	15764905	.	G	.	.	PASS	END=15764992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	15764993	.	G	.	.	PASS	END=15765019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	15765020	.	T	.	.	PASS	END=15765045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	15765046	.	C	.	.	PASS	END=15765051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	15766745	.	C	.	.	PASS	END=15766756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	15766757	.	G	.	.	PASS	END=15766779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	15766780	.	C	.	.	PASS	END=15766801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	15766802	.	G	.	.	PASS	END=15766962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	15766963	.	A	.	.	PASS	END=15767035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	15767036	.	C	T	1975.66	PASS	BaseQRankSum=-0.067;DP=172;Dels=0.00;FS=2.032;HRun=0;HaplotypeScore=17.2013;MQ=60;MQ0=0;MQRankSum=2.044;QD=11.49;ReadPosRankSum=-1.134;SB=-1126.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:78,92:172:99:2006,0,2000:60:99:0.541
chr1	15767037	.	G	.	.	PASS	END=15767089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	15767090	.	T	.	.	PASS	END=15767121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	15767122	.	T	.	.	PASS	END=15767137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	15768892	.	G	.	.	PASS	END=15768907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	15768908	.	G	.	.	PASS	END=15768919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	15768920	.	C	.	.	PASS	END=15768945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	15768946	.	C	.	.	PASS	END=15768959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	15768960	.	G	.	.	PASS	END=15768994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	15768995	.	G	.	.	PASS	END=15769069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	15769070	.	T	.	.	PASS	END=15769091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	15769092	.	A	.	.	PASS	END=15769106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	15769107	.	A	.	.	PASS	END=15769117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	15769118	.	A	.	.	PASS	END=15769119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	15769863	.	T	.	.	PASS	END=15769876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	15769876	.	G	GC	3031.39	PASS	DP=77;FS=0.000;HRun=2;HaplotypeScore=105.0775;MQ=60;MQ0=0;QD=39.37;SB=-1284.64	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,76:77:99:3073,229,0:60:99:0.987
chr1	15769877	.	C	.	.	PASS	END=15769900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	15769901	.	C	.	.	PASS	END=15769945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	15769946	.	A	.	.	PASS	END=15769973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	15769974	.	G	.	.	PASS	END=15770012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	15770013	.	C	.	.	PASS	END=15770032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	15770033	.	G	.	.	PASS	END=15770068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	15770069	.	A	.	.	PASS	END=15770072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	15770073	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:60:60
chr1	15770074	.	C	.	.	PASS	END=15770095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	15770096	.	C	.	.	PASS	END=15770101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	15771050	.	T	.	.	PASS	END=15771086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:60
chr1	15771087	.	C	.	.	PASS	END=15771234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:276:99:60
chr1	15771235	.	T	.	.	PASS	END=15771280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	15771281	.	C	.	.	PASS	END=15771297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	15772041	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:51:60
chr1	15772042	.	C	.	.	PASS	END=15772047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	15772048	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:42:60
chr1	15772049	.	T	.	.	PASS	END=15772065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	15772066	.	G	.	.	PASS	END=15772077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	15772078	.	C	.	.	PASS	END=15772092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	15772093	.	G	.	.	PASS	END=15772131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	15772132	.	G	.	.	PASS	END=15772215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	15772216	.	T	.	.	PASS	END=15772229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	15772230	.	G	.	.	PASS	END=15772245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	15772246	.	T	.	.	PASS	END=15772263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	15772264	.	C	.	.	PASS	END=15772266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	15772267	.	T	.	.	PASS	END=15772270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	15772271	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:21:60
chr1	15772272	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:63:60
chr1	15772273	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:21:60
chr1	15772274	.	A	.	.	PASS	END=15772280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	15772281	.	A	.	.	PASS	END=15772295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	15773019	.	C	.	.	PASS	END=15773022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:93:60
chr1	15773023	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:63:60
chr1	15773024	.	A	.	.	PASS	END=15773030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	15773031	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:71:60
chr1	15773032	.	C	.	.	PASS	END=15773042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:77:60
chr1	15773043	.	C	.	.	PASS	END=15773063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	15773064	.	C	.	.	PASS	END=15773167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	15773168	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:93:99:60
chr1	15783219	.	C	.	.	LowGQX	END=15783318	GT	./.
chr1	15783576	.	C	.	.	LowGQX	END=15783675	GT	./.
chr1	15788054	.	A	.	.	LowGQX	END=15788155	GT	./.
chr1	15788251	.	C	.	.	LowGQX	END=15788350	GT	./.
chr1	15788612	.	A	.	.	LowGQX	END=15788711	GT	./.
chr1	15789226	.	A	.	.	LowGQX	END=15789237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15789238	.	A	.	.	LowGQX	.	GT	./.
chr1	15789239	.	C	.	.	LowGQX	END=15789262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15789263	.	A	.	.	LowGQX	.	GT	./.
chr1	15789264	.	C	.	.	LowGQX	END=15789322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15789323	.	A	.	.	LowGQX	.	GT	./.
chr1	15789324	.	C	.	.	LowGQX	END=15789344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15789345	.	A	.	.	LowGQX	.	GT	./.
chr1	15789346	.	A	.	.	LowGQX	END=15789358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15789879	.	A	.	.	LowGQX	END=15790019	GT	./.
chr1	15792492	.	A	.	.	LowGQX	END=15792576	GT	./.
chr1	15792577	.	G	.	.	LowGQX	END=15792586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15792587	.	T	.	.	LowGQX	END=15792589	GT	./.
chr1	15792590	.	A	.	.	LowGQX	END=15792610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15792611	.	G	.	.	LowGQX	.	GT	./.
chr1	15792612	.	G	.	.	LowGQX	END=15792639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15792640	.	G	.	.	LowGQX	.	GT	./.
chr1	15792641	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15793849	.	C	.	.	LowGQX	END=15794035	GT	./.
chr1	15798444	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15798445	.	C	.	.	LowGQX	.	GT	./.
chr1	15798446	.	G	.	.	LowGQX	END=15798451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15798452	.	G	.	.	LowGQX	END=15798453	GT	./.
chr1	15798454	.	G	.	.	LowGQX	END=15798473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15798474	.	G	.	.	LowGQX	.	GT	./.
chr1	15798475	.	T	.	.	LowGQX	END=15798486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15798487	.	G	.	.	LowGQX	.	GT	./.
chr1	15798488	.	A	.	.	LowGQX	END=15798490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15798491	.	G	.	.	LowGQX	.	GT	./.
chr1	15798492	.	C	.	.	LowGQX	END=15798493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15798494	.	A	.	.	LowGQX	.	GT	./.
chr1	15798495	.	A	.	.	LowGQX	END=15798513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15798514	.	C	.	.	LowGQX	END=15798543	GT	./.
chr1	15802591	.	C	.	.	LowGQX	END=15802615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15802616	.	A	.	.	LowGQX	END=15802690	GT	./.
chr1	15802947	.	C	.	.	LowGQX	END=15803046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15807591	.	A	.	.	LowGQX	END=15807592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15807593	.	G	.	.	LowGQX	.	GT	./.
chr1	15807594	.	T	.	.	LowGQX	END=15807600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15807601	.	G	.	.	LowGQX	END=15807602	GT	./.
chr1	15807603	.	A	.	.	LowGQX	END=15807616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15807617	.	G	.	.	LowGQX	.	GT	./.
chr1	15807618	.	G	.	.	LowGQX	END=15807621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15807622	.	G	.	.	LowGQX	END=15807624	GT	./.
chr1	15807625	.	G	.	.	LowGQX	END=15807626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15807627	.	A	.	.	LowGQX	.	GT	./.
chr1	15807628	.	C	.	.	LowGQX	END=15807665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15807666	.	T	.	.	LowGQX	.	GT	./.
chr1	15807667	.	C	.	.	LowGQX	END=15807672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15807673	.	G	.	.	LowGQX	END=15807674	GT	./.
chr1	15807675	.	C	.	.	LowGQX	END=15807677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15807678	.	C	.	.	LowGQX	.	GT	./.
chr1	15807679	.	C	.	.	LowGQX	END=15807684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15807685	.	C	.	.	LowGQX	.	GT	./.
chr1	15807686	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15807687	.	T	.	.	LowGQX	.	GT	./.
chr1	15807688	.	C	.	.	LowGQX	END=15807692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15808132	.	A	.	.	LowGQX	END=15808202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15808203	.	C	.	.	LowGQX	END=15808204	GT	./.
chr1	15808205	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15808206	.	C	.	.	LowGQX	.	GT	./.
chr1	15808207	.	T	.	.	LowGQX	END=15808208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15808209	.	C	.	.	LowGQX	.	GT	./.
chr1	15808210	.	T	.	.	LowGQX	END=15808212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15808213	.	T	.	.	LowGQX	.	GT	./.
chr1	15808214	.	C	.	.	LowGQX	END=15808215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15808216	.	C	.	.	LowGQX	.	GT	./.
chr1	15808217	.	A	.	.	LowGQX	END=15808225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15808226	.	T	.	.	LowGQX	.	GT	./.
chr1	15808227	.	C	.	.	LowGQX	END=15808236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15808237	.	T	.	.	LowGQX	.	GT	./.
chr1	15808238	.	C	.	.	LowGQX	END=15808240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15808241	.	C	.	.	LowGQX	.	GT	./.
chr1	15808242	.	C	.	.	LowGQX	END=15808244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15808758	.	A	.	.	LowGQX	END=15808890	GT	./.
chr1	15809757	.	A	.	.	LowGQX	END=15809857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15809858	.	C	.	.	LowGQX	END=15809897	GT	./.
chr1	15812394	.	A	.	.	LowGQX	END=15812543	GT	./.
chr1	15813778	.	A	.	.	LowGQX	END=15813934	GT	./.
chr1	15817749	.	T	.	.	LowGQX	END=15817826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15817827	.	C	.	.	LowGQX	END=15817848	GT	./.
chr1	15819435	.	G	.	.	PASS	END=15819534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	15820278	.	T	.	.	PASS	END=15820286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	15820287	.	G	.	.	PASS	END=15820292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	15820293	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:27:61
chr1	15820294	.	G	.	.	PASS	END=15820306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	15820307	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:36:60
chr1	15820307	.	A	AC	301.75	PASS	BaseQRankSum=1.754;DP=23;FS=0.000;HRun=4;HaplotypeScore=121.0768;MQ=60;MQ0=0;MQRankSum=1.016;QD=13.12;ReadPosRankSum=-2.308;SB=-31.40	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:12,11:23:99:341,0,358:60:99:0.478
chr1	15820308	.	C	.	.	PASS	END=15820311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:61
chr1	15820312	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:21:61
chr1	15820313	.	A	.	.	PASS	END=15820318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:61
chr1	15820319	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:81:61
chr1	15820320	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:45:61
chr1	15820321	.	G	.	.	PASS	END=15820330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:61
chr1	15820331	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:93:61
chr1	15820332	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:61
chr1	15820333	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:87:61
chr1	15820334	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:60:61
chr1	15820335	.	C	.	.	PASS	END=15820337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:61
chr1	15820338	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:69:61
chr1	15820339	.	G	.	.	PASS	END=15820345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:61
chr1	15820346	.	A	.	.	PASS	END=15820347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:66:61
chr1	15820348	.	C	.	.	PASS	END=15820359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:61
chr1	15820360	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:66:61
chr1	15820361	.	C	.	.	PASS	END=15820373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:61
chr1	15820374	.	A	.	.	PASS	END=15820385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	15820386	.	C	.	.	PASS	END=15820409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	15820410	.	C	.	.	PASS	END=15820498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	15821746	.	C	.	.	PASS	END=15821770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	15821771	.	G	.	.	PASS	END=15821916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	15821917	.	G	.	.	PASS	END=15821943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	15821944	.	T	.	.	PASS	END=15821949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	15831104	.	A	.	.	PASS	END=15831224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	15831225	.	A	.	.	PASS	END=15831255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	15832480	.	C	.	.	PASS	END=15832520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	15832521	.	G	.	.	PASS	END=15832542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	15832543	.	T	C	1718.49	PASS	BaseQRankSum=-1.272;DP=129;Dels=0.00;FS=3.324;HRun=1;HaplotypeScore=8.5223;MQ=60;MQ0=0;MQRankSum=-0.261;QD=13.32;ReadPosRankSum=-0.987;SB=-1103.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:53,75:129:99:1748,0,1299:60:99:0.586
chr1	15832544	.	G	.	.	PASS	END=15832579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	15833392	.	A	.	.	PASS	END=15833418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	15833419	.	T	.	.	PASS	END=15833471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	15833472	.	G	.	.	PASS	END=15833536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:252:99:60
chr1	15833537	.	A	.	.	PASS	END=15833565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	15833566	.	T	.	.	PASS	END=15833572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	15833575	.	C	.	.	PASS	END=15833612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	15833613	.	C	.	.	PASS	END=15833625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	15833626	.	A	.	.	PASS	END=15833635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	15833636	.	G	.	.	PASS	END=15833672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	15833673	.	A	.	.	PASS	END=15833674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	15834336	.	G	.	.	PASS	END=15834427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	15834428	.	C	.	.	PASS	END=15834435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	15844603	.	A	.	.	PASS	END=15844614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	15844615	.	A	G	1524.50	PASS	BaseQRankSum=0.816;DP=124;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.4251;MQ=60;MQ0=0;MQRankSum=0.153;QD=12.29;ReadPosRankSum=-0.213;SB=-236.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:68,56:124:99:1554,0,2027:60:99:0.452
chr1	15844616	.	A	.	.	PASS	END=15844632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	15844633	.	G	.	.	PASS	END=15844664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	15844665	.	C	.	.	PASS	END=15844781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	15844782	.	C	.	.	PASS	END=15844796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	15844797	.	A	.	.	PASS	END=15844841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	15844842	.	C	.	.	PASS	END=15844859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	15844860	.	C	.	.	PASS	END=15844892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	15850522	.	G	.	.	PASS	END=15850552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	15850553	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:66:60
chr1	15850553	.	C	CGGGGGCG	1043.28	SB	BaseQRankSum=3.841;DP=37;FS=11.907;HRun=0;HaplotypeScore=163.8700;MQ=60;MQ0=0;MQRankSum=0.939;QD=28.20;ReadPosRankSum=1.587;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:25,11:37:99:1082,0,1831:60:99:0.306
chr1	15850554	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:96:61
chr1	15850555	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:69:61
chr1	15850556	.	G	.	.	PASS	END=15850569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	15850570	.	G	.	.	PASS	END=15850585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	15850586	.	G	.	.	PASS	END=15850602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	15850603	.	G	A	1125.48	PASS	BaseQRankSum=-1.911;DP=95;Dels=0.00;FS=0.868;HRun=0;HaplotypeScore=15.3286;MQ=60;MQ0=0;MQRankSum=1.447;QD=11.85;ReadPosRankSum=-1.061;SB=-494.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,51:95:99:1155,0,1148:60:99:0.548
chr1	15850604	.	C	.	.	PASS	END=15850612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	15850613	.	G	A	1167.85	PASS	BaseQRankSum=-1.610;DP=99;Dels=0.00;FS=3.095;HRun=0;HaplotypeScore=13.3418;MQ=60;MQ0=0;MQRankSum=-0.125;QD=11.80;ReadPosRankSum=-1.421;SB=-505.57	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,50:99:99:1198,0,1185:60:99:0.532
chr1	15850614	.	C	.	.	PASS	END=15850615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	15850616	.	T	.	.	PASS	END=15850741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	15855599	.	A	.	.	LowGQX	END=15855769	GT	./.
chr1	15860716	.	C	.	.	LowGQX	END=15860815	GT	./.
chr1	15862968	.	A	.	.	LowGQX	END=15863311	GT	./.
chr1	15870892	.	A	.	.	LowGQX	END=15870942	GT	./.
chr1	15870943	.	T	.	.	LowGQX	END=15871080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15873260	.	A	.	.	LowGQX	END=15873368	GT	./.
chr1	15874763	.	A	.	.	LowGQX	END=15874792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15874793	.	T	.	.	LowGQX	.	GT	./.
chr1	15874794	.	A	.	.	LowGQX	END=15874803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15874804	.	T	.	.	LowGQX	.	GT	./.
chr1	15874805	.	A	.	.	LowGQX	END=15874869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15874870	.	C	.	.	LowGQX	END=15874925	GT	./.
chr1	15886019	.	A	.	.	LowGQX	END=15886153	GT	./.
chr1	15888635	.	A	.	.	LowGQX	END=15888711	GT	./.
chr1	15888712	.	G	.	.	LowGQX	END=15888822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15890422	.	A	.	.	LowGQX	END=15890608	GT	./.
chr1	15890767	.	T	.	.	LowGQX	END=15890866	GT	./.
chr1	15892405	.	T	.	.	LowGQX	END=15892504	GT	./.
chr1	15892575	.	A	.	.	LowGQX	END=15892685	GT	./.
chr1	15893592	.	A	.	.	LowGQX	END=15893618	GT	./.
chr1	15893619	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15893620	.	A	.	.	LowGQX	.	GT	./.
chr1	15893621	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15893622	.	G	.	.	LowGQX	.	GT	./.
chr1	15893623	.	T	.	.	LowGQX	END=15893625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15893626	.	C	.	.	LowGQX	.	GT	./.
chr1	15893627	.	T	.	.	LowGQX	END=15893633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15893634	.	A	.	.	LowGQX	.	GT	./.
chr1	15893635	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	15893636	.	A	.	.	LowGQX	END=15893657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15893658	.	T	.	.	LowGQX	.	GT	./.
chr1	15893659	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	15893660	.	G	.	.	LowGQX	END=15893663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15893664	.	C	.	.	LowGQX	.	GT	./.
chr1	15893665	.	G	.	.	LowGQX	END=15893677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15893678	.	C	.	.	LowGQX	.	GT	./.
chr1	15893679	.	C	.	.	LowGQX	END=15893685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15893686	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	15893687	.	T	.	.	LowGQX	END=15893695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15893696	.	C	.	.	LowGQX	.	GT	./.
chr1	15893697	.	A	.	.	LowGQX	END=15893701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15893702	.	G	.	.	LowGQX	.	GT	./.
chr1	15893703	.	T	.	.	LowGQX	END=15893719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15893720	.	C	.	.	LowGQX	.	GT	./.
chr1	15893721	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15893722	.	G	.	.	LowGQX	.	GT	./.
chr1	15893723	.	C	.	.	LowGQX	END=15893732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15893733	.	A	.	.	LowGQX	.	GT	./.
chr1	15893734	.	A	.	.	LowGQX	END=15893737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15893738	.	T	.	.	LowGQX	END=15893739	GT	./.
chr1	15893740	.	C	.	.	LowGQX	END=15893759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15893760	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	15893761	.	C	.	.	LowGQX	END=15893766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15894271	.	A	.	.	LowGQX	END=15894674	GT	./.
chr1	15900133	.	A	.	.	LowGQX	END=15900232	GT	./.
chr1	15901245	.	T	.	.	LowGQX	END=15901344	GT	./.
chr1	15904178	.	A	.	.	LowGQX	END=15904298	GT	./.
chr1	15904299	.	C	.	.	LowGQX	END=15904303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15904304	.	A	.	.	LowGQX	.	GT	./.
chr1	15904305	.	T	.	.	LowGQX	END=15904307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15904308	.	G	.	.	LowGQX	.	GT	./.
chr1	15904309	.	A	.	.	LowGQX	END=15904315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15904316	.	A	.	.	LowGQX	END=15904319	GT	./.
chr1	15904320	.	A	.	.	LowGQX	END=15904328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15904329	.	A	.	.	LowGQX	.	GT	./.
chr1	15904330	.	G	.	.	LowGQX	END=15904332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15904333	.	G	.	.	LowGQX	END=15904334	GT	./.
chr1	15904335	.	C	.	.	LowGQX	END=15904344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15904345	.	G	.	.	LowGQX	.	GT	./.
chr1	15904346	.	A	.	.	LowGQX	END=15904353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15904354	.	G	.	.	LowGQX	.	GT	./.
chr1	15904355	.	A	.	.	LowGQX	END=15904361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15905352	.	A	.	.	LowGQX	END=15905551	GT	./.
chr1	15906507	.	T	.	.	LowGQX	END=15906512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15906513	.	C	.	.	LowGQX	END=15906663	GT	./.
chr1	15909686	.	A	.	.	LowGQX	END=15909830	GT	./.
chr1	15909831	.	G	.	.	LowGQX	END=15909849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15909850	.	C	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	15909851	.	A	.	.	LowGQX	END=15909860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15909861	.	G	.	.	LowGQX	.	GT	./.
chr1	15909862	.	A	.	.	LowGQX	END=15909874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15909875	.	G	.	.	LowGQX	.	GT	./.
chr1	15909876	.	C	.	.	LowGQX	END=15909892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15911178	.	C	.	.	LowGQX	END=15911467	GT	./.
chr1	15944164	.	C	.	.	LowGQX	END=15944305	GT	./.
chr1	15953162	.	A	.	.	LowGQX	END=15953295	GT	./.
chr1	15956818	.	A	.	.	LowGQX	END=15957058	GT	./.
chr1	15959932	.	A	.	.	LowGQX	END=15960064	GT	./.
chr1	15960248	.	A	.	.	LowGQX	END=15960347	GT	./.
chr1	15964750	.	T	.	.	LowGQX	END=15964852	GT	./.
chr1	15964853	.	A	.	.	LowGQX	END=15964931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15970015	.	A	.	.	LowGQX	END=15970024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15970025	.	A	.	.	LowGQX	END=15970147	GT	./.
chr1	15976213	.	A	.	.	LowGQX	END=15976320	GT	./.
chr1	15978199	.	A	.	.	LowGQX	END=15978392	GT	./.
chr1	15983071	.	T	.	.	LowGQX	END=15983170	GT	./.
chr1	15986362	.	G	.	.	LowGQX	END=15986509	GT	./.
chr1	15986510	.	A	.	.	LowGQX	END=15986543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15986544	.	G	.	.	LowGQX	.	GT	./.
chr1	15986545	.	A	.	.	LowGQX	END=15986554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15986555	.	A	.	.	LowGQX	.	GT	./.
chr1	15986556	.	A	.	.	LowGQX	END=15986585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15986586	.	C	.	.	LowGQX	.	GT	./.
chr1	15986587	.	A	.	.	LowGQX	END=15986590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15986591	.	T	.	.	LowGQX	.	GT	./.
chr1	15986592	.	C	.	.	LowGQX	END=15986596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15986597	.	T	.	.	LowGQX	END=15986598	GT	./.
chr1	15986599	.	A	.	.	LowGQX	END=15986600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15986601	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	15986602	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15986603	.	T	.	.	LowGQX	.	GT	./.
chr1	15986604	.	G	.	.	LowGQX	END=15986607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15986608	.	C	.	.	LowGQX	.	GT	./.
chr1	15986609	.	C	.	.	LowGQX	END=15986611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15986612	.	A	.	.	LowGQX	.	GT	./.
chr1	15986613	.	G	.	.	LowGQX	END=15986618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15986619	.	C	.	.	LowGQX	.	GT	./.
chr1	15986620	.	A	.	.	LowGQX	END=15986629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	15986630	.	A	.	.	LowGQX	END=15987379	GT	./.
chr1	15987380	.	G	.	.	LowGQX	END=15987531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15987532	.	C	.	.	LowGQX	.	GT	./.
chr1	15987533	.	C	.	.	LowGQX	END=15987593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15987594	.	T	.	.	LowGQX	.	GT	./.
chr1	15987595	.	G	.	.	LowGQX	END=15987627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15987628	.	T	.	.	LowGQX	.	GT	./.
chr1	15987629	.	A	.	.	LowGQX	END=15987681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	15987682	.	C	.	.	LowGQX	END=15988219	GT	./.
chr1	16007999	.	C	.	.	LowGQX	END=16008098	GT	./.
chr1	16010779	.	C	.	.	LowGQX	END=16011118	GT	./.
chr1	16042731	.	G	.	.	LowGQX	END=16042838	GT	./.
chr1	16043201	.	G	.	.	LowGQX	END=16043311	GT	./.
chr1	16044387	.	G	.	.	LowGQX	END=16044388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16044389	.	C	.	.	LowGQX	.	GT	./.
chr1	16044390	.	C	.	.	LowGQX	END=16044429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16044430	.	A	.	.	LowGQX	END=16044487	GT	./.
chr1	16045027	.	T	.	.	LowGQX	END=16045126	GT	./.
chr1	16046228	.	G	.	.	LowGQX	END=16046415	GT	./.
chr1	16047804	.	T	.	.	LowGQX	END=16047903	GT	./.
chr1	16051811	.	G	.	.	LowGQX	END=16051836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16051837	.	T	.	.	LowGQX	END=16051842	GT	./.
chr1	16051843	.	C	.	.	LowGQX	END=16052005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16052006	.	C	.	.	LowGQX	END=16052040	GT	./.
chr1	16053508	.	G	.	.	LowGQX	END=16054120	GT	./.
chr1	16054121	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054122	.	G	.	.	LowGQX	END=16054123	GT	./.
chr1	16054124	.	T	.	.	LowGQX	END=16054129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054130	.	G	.	.	LowGQX	.	GT	./.
chr1	16054131	.	A	.	.	LowGQX	END=16054134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054135	.	A	.	.	LowGQX	.	GT	./.
chr1	16054136	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054137	.	G	.	.	LowGQX	.	GT	./.
chr1	16054138	.	C	.	.	LowGQX	END=16054146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054147	.	T	.	.	LowGQX	.	GT	./.
chr1	16054148	.	G	.	.	LowGQX	END=16054150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054151	.	G	.	.	LowGQX	END=16054152	GT	./.
chr1	16054153	.	C	.	.	LowGQX	END=16054156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054157	.	G	.	.	LowGQX	.	GT	./.
chr1	16054158	.	C	.	.	LowGQX	END=16054166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054167	.	G	.	.	LowGQX	.	GT	./.
chr1	16054168	.	T	.	.	LowGQX	END=16054170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054171	.	G	.	.	LowGQX	.	GT	./.
chr1	16054172	.	G	.	.	LowGQX	END=16054182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054183	.	T	.	.	LowGQX	.	GT	./.
chr1	16054184	.	G	.	.	LowGQX	END=16054193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054194	.	G	.	.	LowGQX	.	GT	./.
chr1	16054195	.	A	.	.	LowGQX	END=16054200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054201	.	G	.	.	LowGQX	.	GT	./.
chr1	16054202	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054203	.	A	.	.	LowGQX	.	GT	./.
chr1	16054204	.	C	.	.	LowGQX	END=16054212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054213	.	T	.	.	LowGQX	.	GT	./.
chr1	16054214	.	T	.	.	LowGQX	END=16054226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054227	.	A	.	.	LowGQX	.	GT	./.
chr1	16054228	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054229	.	G	.	.	LowGQX	.	GT	./.
chr1	16054230	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054231	.	G	.	.	LowGQX	.	GT	./.
chr1	16054232	.	A	.	.	LowGQX	END=16054240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054241	.	C	.	.	LowGQX	END=16054242	GT	./.
chr1	16054243	.	G	.	.	LowGQX	END=16054273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054274	.	G	.	.	LowGQX	.	GT	./.
chr1	16054275	.	G	.	.	LowGQX	END=16054295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16054296	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16054297	.	C	.	.	LowGQX	END=16054324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16054325	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16054326	.	A	.	.	LowGQX	END=16054327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16054559	.	A	.	.	LowGQX	END=16054658	GT	./.
chr1	16054757	.	C	.	.	LowGQX	END=16054856	GT	./.
chr1	16055146	.	T	.	.	LowGQX	END=16055165	GT	./.
chr1	16055166	.	G	.	.	LowGQX	END=16055245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16055591	.	T	.	.	LowGQX	END=16055607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16055608	.	C	.	.	LowGQX	.	GT	./.
chr1	16055609	.	C	.	.	LowGQX	END=16055625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16055626	.	G	.	.	LowGQX	.	GT	./.
chr1	16055627	.	G	.	.	LowGQX	END=16055631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16055632	.	C	.	.	LowGQX	.	GT	./.
chr1	16055633	.	A	.	.	LowGQX	END=16055636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16055637	.	A	.	.	LowGQX	.	GT	./.
chr1	16055638	.	C	.	.	LowGQX	END=16055690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16056291	.	G	.	.	LowGQX	END=16056424	GT	./.
chr1	16057026	.	G	.	.	LowGQX	END=16057217	GT	./.
chr1	16057670	.	G	.	.	LowGQX	END=16057769	GT	./.
chr1	16058383	.	G	.	.	LowGQX	END=16058430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16058431	.	C	.	.	LowGQX	END=16058543	GT	./.
chr1	16058844	.	G	.	.	LowGQX	END=16058847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16058848	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16058849	.	T	.	.	LowGQX	END=16058855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16058856	.	G	.	.	LowGQX	.	GT	./.
chr1	16058857	.	G	.	.	LowGQX	END=16058866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16058867	.	C	.	.	LowGQX	.	GT	./.
chr1	16058868	.	C	.	.	LowGQX	END=16058884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16058885	.	G	.	.	LowGQX	.	GT	./.
chr1	16058886	.	C	.	.	LowGQX	END=16058893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16058894	.	T	.	.	LowGQX	.	GT	./.
chr1	16058895	.	C	.	.	LowGQX	END=16058901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16058902	.	G	.	.	LowGQX	.	GT	./.
chr1	16058903	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16058904	.	T	.	.	LowGQX	.	GT	./.
chr1	16058905	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16058906	.	A	.	.	LowGQX	.	GT	./.
chr1	16058907	.	C	.	.	LowGQX	END=16058924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16058925	.	T	.	.	LowGQX	.	GT	./.
chr1	16058926	.	G	.	.	LowGQX	END=16058930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16058931	.	T	.	.	LowGQX	.	GT	./.
chr1	16058932	.	T	.	.	LowGQX	END=16058973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16058974	.	G	.	.	LowGQX	END=16059011	GT	./.
chr1	16059012	.	G	.	.	LowGQX	END=16059020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16059021	.	C	.	.	LowGQX	.	GT	./.
chr1	16059022	.	T	.	.	LowGQX	END=16059024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16059106	.	G	.	.	LowGQX	END=16059140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16059141	.	C	.	.	LowGQX	.	GT	./.
chr1	16059142	.	C	.	.	LowGQX	END=16059153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16059154	.	C	.	.	LowGQX	.	GT	./.
chr1	16059155	.	C	.	.	LowGQX	END=16059157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16059158	.	A	.	.	LowGQX	.	GT	./.
chr1	16059159	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16059160	.	C	.	.	LowGQX	END=16059223	GT	./.
chr1	16060291	.	G	.	.	LowGQX	END=16060429	GT	./.
chr1	16062979	.	C	.	.	LowGQX	END=16063213	GT	./.
chr1	16063214	.	G	.	.	LowGQX	END=16063218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16063219	.	A	.	.	LowGQX	.	GT	./.
chr1	16063220	.	A	.	.	LowGQX	END=16063223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16063224	.	C	.	.	LowGQX	END=16063225	GT	./.
chr1	16063226	.	C	.	.	LowGQX	END=16063237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16063238	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16063239	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16063240	.	G	.	.	LowGQX	END=16063241	GT	./.
chr1	16063242	.	T	.	.	LowGQX	END=16063253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16063254	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16063255	.	G	.	.	LowGQX	END=16063275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16063276	.	T	.	.	LowGQX	.	GT	./.
chr1	16063277	.	C	.	.	LowGQX	END=16063280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16063281	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16063282	.	A	.	.	LowGQX	END=16063287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16063288	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16063289	.	A	.	.	LowGQX	END=16063295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16063296	.	A	.	.	LowGQX	.	GT	./.
chr1	16063297	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16063298	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16063299	.	G	.	.	LowGQX	.	GT	./.
chr1	16063300	.	T	.	.	LowGQX	END=16063326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16063327	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	16063328	.	G	.	.	LowGQX	END=16063334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	16063335	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	16063336	.	T	.	.	LowGQX	END=16063346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	16063347	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	16063348	.	C	.	.	LowGQX	END=16063360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	16064407	.	C	.	.	LowGQX	END=16064506	GT	./.
chr1	16064586	.	A	.	.	LowGQX	END=16064766	GT	./.
chr1	16065047	.	A	.	.	LowGQX	END=16065158	GT	./.
chr1	16065159	.	T	.	.	LowGQX	END=16065167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16065168	.	C	.	.	LowGQX	.	GT	./.
chr1	16065169	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16065170	.	T	.	.	LowGQX	.	GT	./.
chr1	16065171	.	T	.	.	LowGQX	END=16065184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16065185	.	A	.	.	LowGQX	.	GT	./.
chr1	16065186	.	C	.	.	LowGQX	END=16065219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16065220	.	C	.	.	LowGQX	.	GT	./.
chr1	16065221	.	A	.	.	LowGQX	END=16065225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16065697	.	C	.	.	LowGQX	END=16065903	GT	./.
chr1	16069049	.	G	.	.	LowGQX	END=16069201	GT	./.
chr1	16069317	.	C	.	.	LowGQX	END=16069416	GT	./.
chr1	16069513	.	A	.	.	LowGQX	END=16069664	GT	./.
chr1	16069665	.	G	.	.	LowGQX	END=16069689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16069690	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16069691	.	T	.	.	LowGQX	END=16069699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16069700	.	C	.	.	LowGQX	.	GT	./.
chr1	16069701	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16069702	.	G	.	.	LowGQX	.	GT	./.
chr1	16069703	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16070653	.	A	.	.	LowGQX	END=16070941	GT	./.
chr1	16070942	.	G	.	.	LowGQX	END=16071077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16073360	.	A	.	.	LowGQX	END=16073424	GT	./.
chr1	16073425	.	G	.	.	LowGQX	END=16073525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16073526	.	C	T	58.30	LowGQ;LowGQX	DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=14.57;SB=-75.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,4:4:6.02:90,6,0:60:6:1.000
chr1	16073527	.	T	G	58.29	LowGQ;LowGQX	DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=14.57;SB=-72.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,4:4:6.02:90,6,0:60:6:1.000
chr1	16073528	.	G	.	.	LowGQX	END=16073551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	16074035	.	C	.	.	LowGQX	END=16074134	GT	./.
chr1	16091477	.	C	.	.	PASS	END=16091514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	16091515	.	G	.	.	PASS	END=16091609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	16091610	.	G	.	.	PASS	END=16091651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	16091652	.	G	.	.	PASS	END=16091689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	16091690	.	C	.	.	PASS	END=16091715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	16091716	.	C	.	.	PASS	END=16091730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	16093858	.	T	.	.	PASS	END=16093864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	16093865	.	T	.	.	PASS	END=16093937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	16093938	.	C	.	.	PASS	END=16093988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	16093989	.	T	.	.	PASS	END=16094007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	16094008	.	A	.	.	PASS	END=16094023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	16094024	.	A	.	.	PASS	END=16094031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	16094032	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:75:60
chr1	16094033	.	T	.	.	PASS	END=16094034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	16094035	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:66:60
chr1	16094036	.	C	.	.	PASS	END=16094039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	16094040	.	G	.	.	PASS	END=16094043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	16094044	.	C	.	.	PASS	END=16094059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	16094060	.	T	.	.	PASS	END=16094063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	16094064	.	G	.	.	PASS	END=16094077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	16094078	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:36:60
chr1	16095021	.	A	.	.	PASS	END=16095022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	16095023	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:76:60
chr1	16095024	.	C	.	.	PASS	END=16095057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	16095058	.	C	.	.	PASS	END=16095127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:85:60
chr1	16096902	.	A	.	.	PASS	END=16096933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	16096934	.	C	T	3018.91	PASS	BaseQRankSum=1.591;DP=272;Dels=0.00;FS=11.678;HRun=1;HaplotypeScore=25.6518;MQ=60;MQ0=0;MQRankSum=-1.106;QD=11.10;ReadPosRankSum=0.353;SB=-749.99	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:149,121:272:99:3049,0,3512:60:99:0.448
chr1	16096935	.	C	.	.	PASS	END=16097069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr1	16097070	.	C	.	.	PASS	END=16097075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	16101111	.	A	.	.	PASS	END=16101123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	16101124	.	G	.	.	PASS	END=16101159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	16101160	.	C	.	.	PASS	END=16101184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:289:99:60
chr1	16101185	.	T	.	.	PASS	END=16101274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:359:99:60
chr1	16101275	.	C	.	.	PASS	END=16101320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:277:99:60
chr1	16101321	.	G	.	.	PASS	END=16101330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	16101331	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:195:99:60
chr1	16101332	.	G	A	2476.14	PASS	BaseQRankSum=2.935;DP=195;Dels=0.00;FS=1.399;HRun=1;HaplotypeScore=21.0427;MQ=60;MQ0=0;MQRankSum=0.189;QD=12.70;ReadPosRankSum=1.717;SB=-592.66	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:99,96:195:99:2506,0,2573:60:99:0.492
chr1	16101333	.	G	.	.	PASS	END=16101346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	16101347	.	A	.	.	PASS	END=16101358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	16101359	.	C	.	.	PASS	END=16101377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	16101378	.	G	.	.	PASS	END=16101409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	16101410	.	T	.	.	PASS	END=16101429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	16101430	.	T	.	.	PASS	END=16101443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:59
chr1	16101444	.	T	.	.	PASS	END=16101445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:59
chr1	16101446	.	G	.	.	PASS	END=16101447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:59
chr1	16101448	.	T	.	.	PASS	END=16101454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:59
chr1	16101455	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:57:59
chr1	16101456	.	G	.	.	PASS	END=16101462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:59
chr1	16101463	.	C	.	.	PASS	END=16101481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:58
chr1	16101482	.	G	.	.	PASS	END=16101487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:58
chr1	16101488	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:58
chr1	16101489	.	G	.	.	PASS	END=16101491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:58
chr1	16101492	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:58
chr1	16101493	.	C	.	.	PASS	END=16101499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:58
chr1	16101500	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:58
chr1	16101501	.	C	.	.	PASS	END=16101507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:58
chr1	16101508	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:59
chr1	16101509	.	C	.	.	PASS	END=16101526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:59
chr1	16103663	.	A	.	.	PASS	END=16103673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	16103674	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:51:60
chr1	16103675	.	C	.	.	PASS	END=16103708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	16103709	.	C	.	.	PASS	END=16103783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr1	16103784	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:96:60
chr1	16111041	.	A	.	.	PASS	END=16111075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	16111076	.	G	.	.	PASS	END=16111145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	16111146	.	G	.	.	PASS	END=16111158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	16133868	.	T	.	.	LowGQX	END=16134144	GT	./.
chr1	16174501	.	C	.	.	LowGQX	END=16174654	GT	./.
chr1	16199309	.	A	.	.	LowGQX	END=16199633	GT	./.
chr1	16200609	.	T	.	.	LowGQX	END=16200890	GT	./.
chr1	16202695	.	A	.	.	LowGQX	END=16202773	GT	./.
chr1	16202774	.	G	.	.	LowGQX	END=16202945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16202946	.	T	.	.	LowGQX	END=16203175	GT	./.
chr1	16235814	.	A	.	.	LowGQX	END=16235978	GT	./.
chr1	16237594	.	A	.	.	LowGQX	END=16237602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16237603	.	C	.	.	LowGQX	.	GT	./.
chr1	16237604	.	C	.	.	LowGQX	END=16237613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16237614	.	G	.	.	LowGQX	END=16237615	GT	./.
chr1	16237616	.	C	.	.	LowGQX	END=16237621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16237622	.	C	.	.	LowGQX	.	GT	./.
chr1	16237623	.	A	.	.	LowGQX	END=16237635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16237636	.	A	.	.	LowGQX	END=16237637	GT	./.
chr1	16237638	.	T	.	.	LowGQX	END=16237659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16237660	.	G	.	.	LowGQX	.	GT	./.
chr1	16237661	.	A	.	.	LowGQX	END=16237682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16237683	.	G	.	.	LowGQX	.	GT	./.
chr1	16237684	.	G	.	.	LowGQX	END=16237788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16237789	.	A	.	.	LowGQX	END=16237798	GT	./.
chr1	16242621	.	A	.	.	LowGQX	END=16242776	GT	./.
chr1	16245419	.	A	.	.	LowGQX	END=16245548	GT	./.
chr1	16245897	.	A	.	.	LowGQX	END=16246014	GT	./.
chr1	16247363	.	A	.	.	LowGQX	END=16247480	GT	./.
chr1	16248692	.	T	.	.	LowGQX	END=16248846	GT	./.
chr1	16254584	.	A	.	.	LowGQX	END=16254675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16254676	.	G	.	.	LowGQX	.	GT	./.
chr1	16254677	.	C	.	.	LowGQX	END=16254687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16254688	.	A	.	.	LowGQX	END=16254941	GT	./.
chr1	16254942	.	G	.	.	LowGQX	END=16255053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255054	.	A	.	.	LowGQX	.	GT	./.
chr1	16255055	.	T	.	.	LowGQX	END=16255062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255063	.	A	.	.	LowGQX	.	GT	./.
chr1	16255064	.	C	.	.	LowGQX	END=16255068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255069	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16255070	.	A	.	.	LowGQX	END=16255081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16255082	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16255083	.	A	.	.	LowGQX	END=16255091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16255092	.	C	.	.	LowGQX	.	GT	./.
chr1	16255093	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255094	.	A	.	.	LowGQX	.	GT	./.
chr1	16255095	.	A	.	.	LowGQX	END=16255102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255103	.	A	.	.	LowGQX	.	GT	./.
chr1	16255104	.	A	.	.	LowGQX	END=16255106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255107	.	C	.	.	LowGQX	.	GT	./.
chr1	16255108	.	A	.	.	LowGQX	END=16255110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255111	.	T	.	.	LowGQX	.	GT	./.
chr1	16255112	.	A	.	.	LowGQX	END=16255113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255114	.	A	.	.	LowGQX	.	GT	./.
chr1	16255115	.	G	.	.	LowGQX	END=16255117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255118	.	C	.	.	LowGQX	.	GT	./.
chr1	16255119	.	G	.	.	LowGQX	END=16255121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255122	.	C	.	.	LowGQX	.	GT	./.
chr1	16255123	.	T	.	.	LowGQX	END=16255131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255132	.	G	.	.	LowGQX	.	GT	./.
chr1	16255133	.	G	.	.	LowGQX	END=16255134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255135	.	G	.	.	LowGQX	.	GT	./.
chr1	16255136	.	A	.	.	LowGQX	END=16255140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255141	.	G	.	.	LowGQX	END=16255142	GT	./.
chr1	16255143	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255144	.	G	.	.	LowGQX	.	GT	./.
chr1	16255145	.	A	.	.	LowGQX	END=16255154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255155	.	G	.	.	LowGQX	END=16255156	GT	./.
chr1	16255157	.	T	.	.	LowGQX	END=16255160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255161	.	T	.	.	LowGQX	.	GT	./.
chr1	16255162	.	A	.	.	LowGQX	END=16255163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255164	.	G	.	.	LowGQX	END=16255165	GT	./.
chr1	16255166	.	A	.	.	LowGQX	END=16255169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255170	.	A	.	.	LowGQX	.	GT	./.
chr1	16255171	.	A	.	.	LowGQX	END=16255174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255175	.	G	.	.	LowGQX	.	GT	./.
chr1	16255176	.	T	.	.	LowGQX	END=16255179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255180	.	A	.	.	LowGQX	.	GT	./.
chr1	16255181	.	A	.	.	LowGQX	END=16255183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255184	.	G	.	.	LowGQX	.	GT	./.
chr1	16255185	.	A	.	.	LowGQX	END=16255196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255197	.	A	.	.	LowGQX	.	GT	./.
chr1	16255198	.	G	.	.	LowGQX	END=16255203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255204	.	A	.	.	LowGQX	.	GT	./.
chr1	16255205	.	C	.	.	LowGQX	END=16255210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255211	.	G	.	.	LowGQX	END=16255212	GT	./.
chr1	16255213	.	A	.	.	LowGQX	END=16255219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255220	.	C	.	.	LowGQX	END=16255650	GT	./.
chr1	16255651	.	G	.	.	LowGQX	END=16255653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255654	.	A	.	.	LowGQX	.	GT	./.
chr1	16255655	.	A	.	.	LowGQX	END=16255792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255793	.	C	.	.	LowGQX	.	GT	./.
chr1	16255794	.	C	.	.	LowGQX	END=16255801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16255802	.	T	.	.	LowGQX	.	GT	./.
chr1	16255803	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255804	.	C	.	.	LowGQX	.	GT	./.
chr1	16255805	.	T	.	.	LowGQX	END=16255806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255807	.	T	.	.	LowGQX	.	GT	./.
chr1	16255808	.	A	.	.	LowGQX	END=16255816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255817	.	A	.	.	LowGQX	.	GT	./.
chr1	16255818	.	T	.	.	LowGQX	END=16255819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255820	.	C	.	.	LowGQX	.	GT	./.
chr1	16255821	.	T	.	.	LowGQX	END=16255833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255834	.	A	.	.	LowGQX	.	GT	./.
chr1	16255835	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16255836	.	A	.	.	LowGQX	END=16255976	GT	./.
chr1	16255977	.	G	.	.	LowGQX	END=16256102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16256103	.	G	.	.	LowGQX	.	GT	./.
chr1	16256104	.	A	.	.	LowGQX	END=16256139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16256140	.	T	.	.	LowGQX	END=16256345	GT	./.
chr1	16256346	.	G	.	.	LowGQX	END=16256438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16256439	.	T	.	.	LowGQX	.	GT	./.
chr1	16256440	.	T	.	.	LowGQX	END=16256523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16256524	.	T	.	.	LowGQX	END=16257887	GT	./.
chr1	16257888	.	G	.	.	LowGQX	END=16257942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16257943	.	A	.	.	LowGQX	.	GT	./.
chr1	16257944	.	A	.	.	LowGQX	END=16257949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16257950	.	G	.	.	LowGQX	.	GT	./.
chr1	16257951	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16257952	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16257953	.	G	.	.	LowGQX	END=16257955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16257956	.	T	.	.	LowGQX	.	GT	./.
chr1	16257957	.	C	.	.	LowGQX	END=16257973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16257974	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16257975	.	G	.	.	LowGQX	END=16257999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258000	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16258001	.	A	.	.	LowGQX	END=16258026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258027	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16258028	.	A	.	.	LowGQX	END=16258043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258044	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16258045	.	T	.	.	LowGQX	END=16258052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258053	.	A	.	.	LowGQX	.	GT	./.
chr1	16258054	.	G	.	.	LowGQX	END=16258056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258057	.	C	.	.	LowGQX	END=16258058	GT	./.
chr1	16258059	.	A	.	.	LowGQX	END=16258061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258062	.	A	.	.	LowGQX	END=16258063	GT	./.
chr1	16258064	.	C	.	.	LowGQX	END=16258065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258066	.	A	.	.	LowGQX	END=16258068	GT	./.
chr1	16258069	.	C	.	.	LowGQX	END=16258079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258080	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16258081	.	T	.	.	LowGQX	END=16258099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258100	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16258101	.	A	.	.	LowGQX	END=16258103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258104	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16258105	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16258106	.	G	.	.	LowGQX	END=16258109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258110	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16258111	.	A	.	.	LowGQX	END=16258184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258185	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16258186	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258187	.	C	.	.	LowGQX	END=16258192	GT	./.
chr1	16258193	.	A	.	.	LowGQX	END=16258194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258195	.	A	.	.	LowGQX	.	GT	./.
chr1	16258196	.	A	.	.	LowGQX	END=16258201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258202	.	C	.	.	LowGQX	.	GT	./.
chr1	16258203	.	G	.	.	LowGQX	END=16258205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258206	.	C	.	.	LowGQX	.	GT	./.
chr1	16258207	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258208	.	A	.	.	LowGQX	END=16258209	GT	./.
chr1	16258210	.	G	.	.	LowGQX	END=16258211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258212	.	C	.	.	LowGQX	.	GT	./.
chr1	16258213	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258214	.	C	.	.	LowGQX	END=16258215	GT	./.
chr1	16258216	.	T	.	.	LowGQX	END=16258217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258218	.	T	.	.	LowGQX	.	GT	./.
chr1	16258219	.	T	.	.	LowGQX	END=16258220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258221	.	A	.	.	LowGQX	.	GT	./.
chr1	16258222	.	G	.	.	LowGQX	END=16258223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258224	.	C	.	.	LowGQX	END=16258647	GT	./.
chr1	16258648	.	T	.	.	LowGQX	END=16258652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258653	.	A	.	.	LowGQX	.	GT	./.
chr1	16258654	.	A	.	.	LowGQX	END=16258659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258660	.	C	.	.	LowGQX	.	GT	./.
chr1	16258661	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258662	.	A	.	.	LowGQX	END=16258665	GT	./.
chr1	16258666	.	A	.	.	LowGQX	END=16258668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258669	.	T	.	.	LowGQX	END=16258670	GT	./.
chr1	16258671	.	A	.	.	LowGQX	END=16258672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258673	.	G	.	.	LowGQX	.	GT	./.
chr1	16258674	.	G	.	.	LowGQX	END=16258677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258678	.	G	.	.	LowGQX	END=16258681	GT	./.
chr1	16258682	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258683	.	C	.	.	LowGQX	END=16258684	GT	./.
chr1	16258685	.	C	.	.	LowGQX	END=16258689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258690	.	G	.	.	LowGQX	.	GT	./.
chr1	16258691	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258692	.	C	.	.	LowGQX	.	GT	./.
chr1	16258693	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258694	.	C	.	.	LowGQX	.	GT	./.
chr1	16258695	.	A	.	.	LowGQX	END=16258699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258700	.	A	.	.	LowGQX	.	GT	./.
chr1	16258701	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16258702	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258703	.	G	.	.	LowGQX	END=16258704	GT	./.
chr1	16258705	.	A	.	.	LowGQX	END=16258708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258709	.	G	.	.	LowGQX	.	GT	./.
chr1	16258710	.	G	.	.	LowGQX	END=16258712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258713	.	G	.	.	LowGQX	.	GT	./.
chr1	16258714	.	T	.	.	LowGQX	END=16258720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258721	.	C	.	.	LowGQX	.	GT	./.
chr1	16258722	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16258723	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258724	.	G	.	.	LowGQX	.	GT	./.
chr1	16258725	.	G	.	.	LowGQX	END=16258745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258746	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16258747	.	G	.	.	LowGQX	.	GT	./.
chr1	16258748	.	A	.	.	LowGQX	END=16258750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258751	.	G	.	.	LowGQX	.	GT	./.
chr1	16258752	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258753	.	G	.	.	LowGQX	END=16258754	GT	./.
chr1	16258755	.	A	.	.	LowGQX	END=16258763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258764	.	G	.	.	LowGQX	.	GT	./.
chr1	16258765	.	T	.	.	LowGQX	END=16258768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258769	.	G	.	.	LowGQX	.	GT	./.
chr1	16258770	.	A	.	.	LowGQX	END=16258771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258772	.	G	.	.	LowGQX	.	GT	./.
chr1	16258773	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258774	.	C	.	.	LowGQX	.	GT	./.
chr1	16258775	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258776	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16258777	.	C	.	.	LowGQX	END=16258778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258779	.	C	.	.	LowGQX	.	GT	./.
chr1	16258780	.	T	.	.	LowGQX	END=16258782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258783	.	G	.	.	LowGQX	.	GT	./.
chr1	16258784	.	G	.	.	LowGQX	END=16258788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258789	.	C	.	.	LowGQX	.	GT	./.
chr1	16258790	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258791	.	C	.	.	LowGQX	END=16258792	GT	./.
chr1	16258793	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16258794	.	A	.	.	LowGQX	END=16258798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16258799	.	G	.	.	LowGQX	.	GT	./.
chr1	16258800	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258801	.	C	.	.	LowGQX	.	GT	./.
chr1	16258802	.	G	.	.	LowGQX	END=16258807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258808	.	G	.	.	LowGQX	.	GT	./.
chr1	16258809	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258810	.	G	.	.	LowGQX	END=16258812	GT	./.
chr1	16258813	.	C	.	.	LowGQX	END=16258814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258815	.	C	.	.	LowGQX	.	GT	./.
chr1	16258816	.	C	.	.	LowGQX	END=16258818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258819	.	G	.	.	LowGQX	END=16258820	GT	./.
chr1	16258821	.	A	.	.	LowGQX	END=16258827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16258828	.	G	.	.	LowGQX	END=16259566	GT	./.
chr1	16259567	.	G	.	.	LowGQX	END=16259581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16259582	.	A	.	.	LowGQX	.	GT	./.
chr1	16259583	.	G	.	.	LowGQX	END=16259616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16259617	.	C	.	.	LowGQX	.	GT	./.
chr1	16259618	.	C	.	.	LowGQX	END=16259645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16259646	.	A	.	.	LowGQX	.	GT	./.
chr1	16259647	.	T	.	.	LowGQX	END=16259701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16259702	.	G	.	.	LowGQX	.	GT	./.
chr1	16259703	.	T	.	.	LowGQX	END=16259746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16259747	.	T	.	.	LowGQX	.	GT	./.
chr1	16259748	.	C	.	.	LowGQX	END=16259755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16259756	.	A	.	.	LowGQX	.	GT	./.
chr1	16259757	.	A	.	.	LowGQX	END=16259768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16259769	.	A	.	.	LowGQX	.	GT	./.
chr1	16259770	.	C	.	.	LowGQX	END=16259772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16259773	.	G	.	.	LowGQX	.	GT	./.
chr1	16259774	.	A	.	.	LowGQX	END=16259780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16259781	.	T	.	.	LowGQX	.	GT	./.
chr1	16259782	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16259783	.	G	.	.	LowGQX	.	GT	./.
chr1	16259784	.	C	.	.	LowGQX	END=16259822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16259823	.	A	.	.	LowGQX	.	GT	./.
chr1	16259824	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16259825	.	G	.	.	LowGQX	.	GT	./.
chr1	16259826	.	G	.	.	LowGQX	END=16259863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16259864	.	C	.	.	LowGQX	END=16259930	GT	./.
chr1	16259931	.	C	.	.	LowGQX	END=16260018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16260019	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	16260020	.	C	.	.	LowGQX	END=16260023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	16260024	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:3.01:60:3
chr1	16260025	.	C	.	.	LowGQX	END=16260036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	16260037	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16260038	.	C	.	.	LowGQX	END=16260074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260075	.	G	.	.	LowGQX	.	GT	./.
chr1	16260076	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260077	.	T	.	.	LowGQX	.	GT	./.
chr1	16260078	.	T	.	.	LowGQX	END=16260083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260084	.	T	.	.	LowGQX	.	GT	./.
chr1	16260085	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260086	.	C	.	.	LowGQX	END=16260088	GT	./.
chr1	16260089	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260090	.	C	.	.	LowGQX	.	GT	./.
chr1	16260091	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260092	.	A	.	.	LowGQX	END=16260097	GT	./.
chr1	16260098	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260099	.	A	.	.	LowGQX	END=16260100	GT	./.
chr1	16260101	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260102	.	G	.	.	LowGQX	.	GT	./.
chr1	16260103	.	T	.	.	LowGQX	END=16260104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260105	.	A	.	.	LowGQX	.	GT	./.
chr1	16260106	.	C	.	.	LowGQX	END=16260107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260108	.	C	.	.	LowGQX	END=16260109	GT	./.
chr1	16260110	.	G	.	.	LowGQX	END=16260117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260118	.	A	.	.	LowGQX	.	GT	./.
chr1	16260119	.	C	.	.	LowGQX	END=16260121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260122	.	A	.	.	LowGQX	END=16260123	GT	./.
chr1	16260124	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260125	.	G	.	.	LowGQX	END=16260126	GT	./.
chr1	16260127	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260128	.	C	.	.	LowGQX	.	GT	./.
chr1	16260129	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260130	.	A	.	.	LowGQX	.	GT	./.
chr1	16260131	.	A	.	.	LowGQX	END=16260133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260134	.	A	.	.	LowGQX	END=16260136	GT	./.
chr1	16260137	.	C	.	.	LowGQX	END=16260139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260140	.	A	.	.	LowGQX	END=16260141	GT	./.
chr1	16260142	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260143	.	C	.	.	LowGQX	END=16260145	GT	./.
chr1	16260146	.	A	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	16260147	.	C	.	.	LowGQX	END=16260148	GT	./.
chr1	16260149	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260150	.	T	.	.	LowGQX	END=16260152	GT	./.
chr1	16260153	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260154	.	T	.	.	LowGQX	END=16260155	GT	./.
chr1	16260156	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260157	.	T	.	.	LowGQX	END=16260159	GT	./.
chr1	16260160	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260161	.	A	.	.	LowGQX	END=16260308	GT	./.
chr1	16260309	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260310	.	T	.	.	LowGQX	.	GT	./.
chr1	16260311	.	G	.	.	LowGQX	END=16260313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260314	.	G	.	.	LowGQX	END=16260316	GT	./.
chr1	16260317	.	G	.	.	LowGQX	END=16260319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260320	.	A	.	.	LowGQX	.	GT	./.
chr1	16260321	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260322	.	C	.	.	LowGQX	.	GT	./.
chr1	16260323	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260324	.	G	.	.	LowGQX	.	GT	./.
chr1	16260325	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260326	.	T	.	.	LowGQX	.	GT	./.
chr1	16260327	.	C	.	.	LowGQX	END=16260329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260330	.	G	.	.	LowGQX	.	GT	./.
chr1	16260331	.	C	.	.	LowGQX	END=16260333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260334	.	C	.	.	LowGQX	.	GT	./.
chr1	16260335	.	C	.	.	LowGQX	END=16260336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260337	.	G	.	.	LowGQX	.	GT	./.
chr1	16260338	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260339	.	G	.	.	LowGQX	END=16260340	GT	./.
chr1	16260341	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260342	.	A	.	.	LowGQX	END=16260345	GT	./.
chr1	16260346	.	T	.	.	LowGQX	END=16260350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260351	.	T	.	.	LowGQX	.	GT	./.
chr1	16260352	.	G	.	.	LowGQX	END=16260361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260362	.	T	.	.	LowGQX	END=16260363	GT	./.
chr1	16260364	.	T	.	.	LowGQX	END=16260366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260367	.	G	.	.	LowGQX	END=16260368	GT	./.
chr1	16260369	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260370	.	T	.	.	LowGQX	.	GT	./.
chr1	16260371	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260372	.	C	.	.	LowGQX	END=16260375	GT	./.
chr1	16260376	.	A	.	.	LowGQX	END=16260378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260379	.	T	.	.	LowGQX	.	GT	./.
chr1	16260380	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260381	.	T	.	.	LowGQX	END=16260382	GT	./.
chr1	16260383	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260384	.	C	.	.	LowGQX	.	GT	./.
chr1	16260385	.	T	.	.	LowGQX	END=16260386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260387	.	C	.	.	LowGQX	.	GT	./.
chr1	16260388	.	C	.	.	LowGQX	END=16260393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260394	.	T	.	.	LowGQX	.	GT	./.
chr1	16260395	.	G	.	.	LowGQX	END=16260406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260407	.	A	.	.	LowGQX	END=16260408	GT	./.
chr1	16260409	.	T	.	.	LowGQX	END=16260417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260418	.	T	.	.	LowGQX	.	GT	./.
chr1	16260419	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260420	.	T	.	.	LowGQX	.	GT	./.
chr1	16260421	.	C	.	.	LowGQX	END=16260423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260424	.	T	.	.	LowGQX	.	GT	./.
chr1	16260425	.	G	.	.	LowGQX	END=16260444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260445	.	G	.	.	LowGQX	.	GT	./.
chr1	16260446	.	G	.	.	LowGQX	END=16260453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16260454	.	C	.	.	LowGQX	END=16260857	GT	./.
chr1	16260858	.	C	.	.	LowGQX	END=16261042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16261043	.	T	.	.	LowGQX	.	GT	./.
chr1	16261044	.	C	.	.	LowGQX	END=16261045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16261046	.	A	.	.	LowGQX	.	GT	./.
chr1	16261047	.	C	.	.	LowGQX	END=16261107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16261108	.	T	.	.	LowGQX	END=16261725	GT	./.
chr1	16261726	.	A	.	.	LowGQX	END=16261814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16261815	.	G	.	.	LowGQX	.	GT	./.
chr1	16261816	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16261817	.	C	.	.	LowGQX	.	GT	./.
chr1	16261818	.	C	.	.	LowGQX	END=16261824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16261825	.	A	.	.	LowGQX	.	GT	./.
chr1	16261826	.	C	.	.	LowGQX	END=16261833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16261834	.	A	.	.	LowGQX	.	GT	./.
chr1	16261835	.	T	.	.	LowGQX	END=16261848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16261849	.	G	.	.	LowGQX	.	GT	./.
chr1	16261850	.	G	.	.	LowGQX	END=16261861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16261862	.	A	.	.	LowGQX	.	GT	./.
chr1	16261863	.	G	.	.	LowGQX	END=16261874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16261875	.	C	.	.	LowGQX	END=16261955	GT	./.
chr1	16261956	.	A	.	.	LowGQX	END=16261960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16261961	.	T	.	.	LowGQX	.	GT	./.
chr1	16261962	.	C	.	.	LowGQX	END=16261993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16261994	.	A	.	.	LowGQX	.	GT	./.
chr1	16261995	.	C	.	.	LowGQX	END=16262011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16262012	.	C	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	16262013	.	T	.	.	LowGQX	END=16262026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16262027	.	G	.	.	LowGQX	.	GT	./.
chr1	16262028	.	T	.	.	LowGQX	END=16262105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16262106	.	T	.	.	LowGQX	END=16262763	GT	./.
chr1	16263656	.	A	.	.	LowGQX	END=16263740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16263741	.	G	.	.	LowGQX	.	GT	./.
chr1	16263742	.	C	.	.	LowGQX	END=16263751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16263752	.	T	.	.	LowGQX	.	GT	./.
chr1	16263753	.	C	.	.	LowGQX	END=16263755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16263756	.	T	.	.	LowGQX	.	GT	./.
chr1	16263757	.	C	.	.	LowGQX	END=16263759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16263760	.	C	.	.	LowGQX	.	GT	./.
chr1	16263761	.	C	.	.	LowGQX	END=16263767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16263768	.	G	.	.	LowGQX	END=16263769	GT	./.
chr1	16263770	.	C	.	.	LowGQX	END=16263773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16263774	.	A	.	.	LowGQX	END=16263775	GT	./.
chr1	16263776	.	G	.	.	LowGQX	END=16263782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16263783	.	G	.	.	LowGQX	.	GT	./.
chr1	16263784	.	A	.	.	LowGQX	END=16263793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16263794	.	T	.	.	LowGQX	END=16263796	GT	./.
chr1	16263797	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16263798	.	C	.	.	LowGQX	.	GT	./.
chr1	16263799	.	C	.	.	LowGQX	END=16263804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16263805	.	G	.	.	LowGQX	.	GT	./.
chr1	16263806	.	C	.	.	LowGQX	END=16263853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16263854	.	C	.	.	LowGQX	END=16264142	GT	./.
chr1	16264295	.	C	.	.	LowGQX	END=16264503	GT	./.
chr1	16265211	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16265212	.	G	.	.	LowGQX	.	GT	./.
chr1	16265213	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16265214	.	T	.	.	LowGQX	.	GT	./.
chr1	16265215	.	G	.	.	LowGQX	END=16265217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16265218	.	G	.	.	LowGQX	.	GT	./.
chr1	16265219	.	A	.	.	LowGQX	END=16265221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16265222	.	G	.	.	LowGQX	.	GT	./.
chr1	16265223	.	A	.	.	LowGQX	END=16265225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16265226	.	A	.	.	LowGQX	.	GT	./.
chr1	16265227	.	C	.	.	LowGQX	END=16265228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16265229	.	G	.	.	LowGQX	END=16265231	GT	./.
chr1	16265232	.	T	.	.	LowGQX	END=16265234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16265235	.	T	.	.	LowGQX	.	GT	./.
chr1	16265236	.	G	.	.	LowGQX	END=16265242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16265243	.	C	.	.	LowGQX	END=16265244	GT	./.
chr1	16265245	.	G	.	.	LowGQX	END=16265246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16265247	.	C	.	.	LowGQX	.	GT	./.
chr1	16265248	.	C	.	.	LowGQX	END=16265249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16265250	.	G	.	.	LowGQX	END=16265251	GT	./.
chr1	16265252	.	G	.	.	LowGQX	END=16265256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16265257	.	T	.	.	LowGQX	END=16265258	GT	./.
chr1	16265259	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16265260	.	C	.	.	LowGQX	.	GT	./.
chr1	16265261	.	C	.	.	LowGQX	END=16265270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16265271	.	T	.	.	LowGQX	.	GT	./.
chr1	16265272	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16265273	.	G	.	.	LowGQX	END=16265274	GT	./.
chr1	16265275	.	G	.	.	LowGQX	END=16265286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16265287	.	G	.	.	LowGQX	END=16265288	GT	./.
chr1	16265289	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16265290	.	C	.	.	LowGQX	.	GT	./.
chr1	16265291	.	C	.	.	LowGQX	END=16265308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16265309	.	A	.	.	LowGQX	END=16265355	GT	./.
chr1	16265356	.	C	.	.	LowGQX	END=16265373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16265789	.	A	.	.	LowGQX	END=16265924	GT	./.
chr1	16268462	.	G	.	.	LowGQX	END=16268506	GT	./.
chr1	16268507	.	T	.	.	LowGQX	END=16268508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16268509	.	T	.	.	LowGQX	END=16268510	GT	./.
chr1	16268511	.	C	.	.	LowGQX	END=16268514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16268515	.	T	.	.	LowGQX	.	GT	./.
chr1	16268516	.	G	.	.	LowGQX	END=16268518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16268519	.	G	.	.	LowGQX	.	GT	./.
chr1	16268520	.	G	.	.	LowGQX	END=16268521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16268522	.	T	.	.	LowGQX	.	GT	./.
chr1	16268523	.	G	.	.	LowGQX	END=16268536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16268537	.	T	.	.	LowGQX	.	GT	./.
chr1	16268538	.	C	.	.	LowGQX	END=16268542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16268543	.	G	.	.	LowGQX	.	GT	./.
chr1	16268544	.	G	.	.	LowGQX	END=16268548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16268549	.	A	.	.	LowGQX	.	GT	./.
chr1	16268550	.	A	.	.	LowGQX	END=16268570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16268571	.	G	.	.	LowGQX	.	GT	./.
chr1	16268572	.	C	.	.	LowGQX	END=16268611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16268612	.	T	.	.	LowGQX	.	GT	./.
chr1	16268613	.	G	.	.	LowGQX	END=16268618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16268619	.	A	.	.	LowGQX	.	GT	./.
chr1	16268620	.	G	.	.	LowGQX	END=16268622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16268623	.	C	.	.	LowGQX	.	GT	./.
chr1	16268624	.	G	.	.	LowGQX	END=16268655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16268656	.	T	.	.	LowGQX	END=16268749	GT	./.
chr1	16268824	.	A	.	.	LowGQX	END=16268936	GT	./.
chr1	16269022	.	A	.	.	LowGQX	END=16269043	GT	./.
chr1	16269044	.	G	.	.	LowGQX	END=16269158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16269159	.	T	.	.	LowGQX	.	GT	./.
chr1	16269160	.	C	.	.	LowGQX	END=16269173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16269174	.	G	.	.	LowGQX	.	GT	./.
chr1	16269175	.	C	.	.	LowGQX	END=16269177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16269178	.	G	.	.	LowGQX	.	GT	./.
chr1	16269179	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16269180	.	T	.	.	LowGQX	.	GT	./.
chr1	16269181	.	G	.	.	LowGQX	END=16269197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16269198	.	C	.	.	LowGQX	END=16269199	GT	./.
chr1	16269200	.	C	.	.	LowGQX	END=16269202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16269203	.	C	.	.	LowGQX	.	GT	./.
chr1	16269204	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16269205	.	A	.	.	LowGQX	.	GT	./.
chr1	16269206	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16269207	.	A	.	.	LowGQX	END=16269230	GT	./.
chr1	16269231	.	C	.	.	LowGQX	END=16269233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16269234	.	C	.	.	LowGQX	.	GT	./.
chr1	16269235	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16269557	.	A	.	.	LowGQX	END=16269691	GT	./.
chr1	16269892	.	A	.	.	LowGQX	END=16270016	GT	./.
chr1	16270092	.	A	.	.	LowGQX	END=16270212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16270297	.	C	.	.	LowGQX	END=16270305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16270306	.	A	.	.	LowGQX	END=16270396	GT	./.
chr1	16270446	.	C	.	.	LowGQX	END=16270607	GT	./.
chr1	16270608	.	G	.	.	LowGQX	END=16270685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16270686	.	A	.	.	LowGQX	.	GT	./.
chr1	16270687	.	G	.	.	LowGQX	END=16270723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16270724	.	A	.	.	LowGQX	.	GT	./.
chr1	16270725	.	C	.	.	LowGQX	END=16270737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16270738	.	A	.	.	LowGQX	.	GT	./.
chr1	16270739	.	T	.	.	LowGQX	END=16270741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16270742	.	G	.	.	LowGQX	.	GT	./.
chr1	16270743	.	G	.	.	LowGQX	END=16270758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16270759	.	G	.	.	LowGQX	END=16270885	GT	./.
chr1	16270886	.	A	.	.	LowGQX	END=16270900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16270901	.	T	.	.	LowGQX	.	GT	./.
chr1	16270902	.	A	.	.	LowGQX	END=16270903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16270904	.	T	.	.	LowGQX	.	GT	./.
chr1	16270905	.	C	.	.	LowGQX	END=16270909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16270910	.	T	.	.	LowGQX	.	GT	./.
chr1	16270911	.	G	.	.	LowGQX	END=16270917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16270918	.	C	.	.	LowGQX	.	GT	./.
chr1	16270919	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16270920	.	T	.	.	LowGQX	.	GT	./.
chr1	16270921	.	C	.	.	LowGQX	END=16270930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16270931	.	T	.	.	LowGQX	.	GT	./.
chr1	16270932	.	G	.	.	LowGQX	END=16270936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16270937	.	A	.	.	LowGQX	.	GT	./.
chr1	16270938	.	G	.	.	LowGQX	END=16270946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16270947	.	G	.	.	LowGQX	.	GT	./.
chr1	16270948	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16270949	.	T	.	.	LowGQX	END=16270950	GT	./.
chr1	16270951	.	G	.	.	LowGQX	END=16270967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16270968	.	T	.	.	LowGQX	.	GT	./.
chr1	16270969	.	G	.	.	LowGQX	END=16270976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16270977	.	T	.	.	LowGQX	.	GT	./.
chr1	16270978	.	G	.	.	LowGQX	END=16270996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16270997	.	T	.	.	LowGQX	.	GT	./.
chr1	16270998	.	A	.	.	LowGQX	END=16271026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16271027	.	T	.	.	LowGQX	.	GT	./.
chr1	16271028	.	G	.	.	LowGQX	END=16271032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16271033	.	T	.	.	LowGQX	.	GT	./.
chr1	16271034	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16271035	.	C	.	.	LowGQX	END=16271061	GT	./.
chr1	16271062	.	C	.	.	LowGQX	END=16271171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16271172	.	A	.	.	LowGQX	.	GT	./.
chr1	16271173	.	G	.	.	LowGQX	END=16271180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16271181	.	T	.	.	LowGQX	.	GT	./.
chr1	16271182	.	G	.	.	LowGQX	END=16271189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16271190	.	A	.	.	LowGQX	.	GT	./.
chr1	16271191	.	C	.	.	LowGQX	END=16271198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16271199	.	T	.	.	LowGQX	END=16271200	GT	./.
chr1	16271201	.	T	.	.	LowGQX	END=16271209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16271210	.	G	.	.	LowGQX	.	GT	./.
chr1	16271211	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16271212	.	C	.	.	LowGQX	END=16271215	GT	./.
chr1	16271216	.	C	.	.	LowGQX	END=16271227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16271228	.	T	.	.	LowGQX	.	GT	./.
chr1	16271229	.	C	.	.	LowGQX	END=16271240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16271241	.	T	.	.	LowGQX	.	GT	./.
chr1	16271242	.	G	.	.	LowGQX	END=16271263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16271264	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	16271265	.	G	.	.	LowGQX	END=16271267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16271268	.	T	.	.	LowGQX	.	GT	./.
chr1	16271269	.	C	.	.	LowGQX	END=16271302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16271303	.	T	.	.	LowGQX	.	GT	./.
chr1	16271304	.	T	.	.	LowGQX	END=16271336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16271430	.	A	.	.	LowGQX	END=16271699	GT	./.
chr1	16272168	.	G	.	.	LowGQX	END=16272339	GT	./.
chr1	16272458	.	C	.	.	LowGQX	END=16272495	GT	./.
chr1	16272496	.	C	.	.	LowGQX	END=16272541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16272542	.	A	.	.	LowGQX	.	GT	./.
chr1	16272543	.	G	.	.	LowGQX	END=16272678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16272679	.	G	.	.	LowGQX	.	GT	./.
chr1	16272680	.	C	.	.	LowGQX	END=16272681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16272682	.	C	.	.	LowGQX	.	GT	./.
chr1	16272683	.	C	.	.	LowGQX	END=16272684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16272685	.	C	.	.	LowGQX	.	GT	./.
chr1	16272686	.	C	.	.	LowGQX	END=16272691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16272692	.	G	.	.	LowGQX	.	GT	./.
chr1	16272693	.	T	.	.	LowGQX	END=16272708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16272709	.	T	.	.	LowGQX	.	GT	./.
chr1	16272710	.	G	.	.	LowGQX	END=16272717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16272718	.	T	.	.	LowGQX	.	GT	./.
chr1	16272719	.	G	.	.	LowGQX	END=16272722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16272723	.	C	.	.	LowGQX	.	GT	./.
chr1	16272724	.	C	.	.	LowGQX	END=16272751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16272752	.	G	.	.	LowGQX	.	GT	./.
chr1	16272753	.	G	.	.	LowGQX	END=16272756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16272757	.	C	.	.	LowGQX	END=16272758	GT	./.
chr1	16272759	.	A	.	.	LowGQX	END=16272769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16272770	.	T	.	.	LowGQX	.	GT	./.
chr1	16272771	.	T	.	.	LowGQX	END=16272778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16272779	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	16272780	.	T	.	.	LowGQX	END=16272798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16272799	.	G	.	.	LowGQX	.	GT	./.
chr1	16272800	.	A	.	.	LowGQX	END=16272811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16273428	.	A	.	.	LowGQX	END=16273620	GT	./.
chr1	16274649	.	T	.	.	LowGQX	END=16274800	GT	./.
chr1	16274801	.	T	.	.	LowGQX	END=16274949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16274950	.	A	.	.	LowGQX	.	GT	./.
chr1	16274951	.	G	.	.	LowGQX	END=16274963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16274964	.	A	.	.	LowGQX	.	GT	./.
chr1	16274965	.	T	.	.	LowGQX	END=16274971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16274972	.	T	.	.	LowGQX	.	GT	./.
chr1	16274973	.	G	.	.	LowGQX	END=16274992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16302432	.	C	.	.	LowGQX	END=16302436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16302437	.	T	.	.	LowGQX	.	GT	./.
chr1	16302438	.	C	.	.	LowGQX	END=16302443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16302444	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16302445	.	C	.	.	LowGQX	END=16302471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16302472	.	A	.	.	LowGQX	.	GT	./.
chr1	16302473	.	C	.	.	LowGQX	END=16302506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16302507	.	G	.	.	LowGQX	END=16302531	GT	./.
chr1	16330790	.	A	.	.	LowGQX	END=16330889	GT	./.
chr1	16332412	.	A	.	.	LowGQX	END=16332487	GT	./.
chr1	16332488	.	A	.	.	LowGQX	END=16332537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16332538	.	C	.	.	LowGQX	END=16332843	GT	./.
chr1	16342062	.	A	.	.	PASS	END=16342101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	16342102	.	C	.	.	PASS	END=16342178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	16342179	.	C	.	.	PASS	END=16342248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	16342249	.	C	.	.	PASS	END=16342256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	16343567	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:39:60
chr1	16343568	.	C	.	.	PASS	END=16343581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	16343582	.	A	.	.	PASS	END=16343583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:57:60
chr1	16343584	.	C	.	.	PASS	END=16343596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	16343597	.	T	.	.	PASS	END=16343651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:60
chr1	16343652	.	A	.	.	PASS	END=16343691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:60
chr1	16343692	.	A	.	.	PASS	END=16343694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:57:60
chr1	16343695	.	G	.	.	PASS	END=16343699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	16343700	.	G	.	.	PASS	END=16343706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:60
chr1	16343707	.	G	.	.	PASS	END=16343710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	16343711	.	T	.	.	PASS	END=16343717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	16344241	.	C	.	.	PASS	END=16344273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	16344274	.	G	.	.	PASS	END=16344325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	16344326	.	G	.	.	PASS	END=16344440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	16344441	.	A	.	.	PASS	END=16344465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	16344466	.	C	T	1742.23	PASS	BaseQRankSum=0.833;DP=157;Dels=0.00;FS=8.622;HRun=0;HaplotypeScore=23.7252;MQ=60;MQ0=0;MQRankSum=-1.994;QD=11.10;ReadPosRankSum=-0.722;SB=-549.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:75,77:157:99:1772,0,2275:60:99:0.507
chr1	16344467	.	G	.	.	PASS	END=16344502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	16344503	.	A	.	.	PASS	END=16344517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	16344518	.	C	.	.	PASS	END=16344531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	16344532	.	C	.	.	PASS	END=16344537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	16344538	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:66:60
chr1	16344539	.	G	.	.	PASS	END=16344570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	16344571	.	C	.	.	PASS	END=16344573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	16344574	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:60:60
chr1	16344575	.	T	.	.	PASS	END=16344576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:96:60
chr1	16344577	.	T	.	.	PASS	END=16344579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	16344580	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:60:60
chr1	16344581	.	T	.	.	PASS	END=16344585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:90:60
chr1	16344586	.	T	.	.	PASS	END=16344587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	16344588	.	G	.	.	PASS	END=16344594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	16344595	.	G	.	.	PASS	END=16344600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	16344601	.	T	.	.	PASS	END=16344602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:75:60
chr1	16344603	.	T	.	.	PASS	END=16344612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	16344613	.	A	.	.	PASS	END=16344621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	16344622	.	C	.	.	PASS	END=16344630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	16344631	.	G	.	.	PASS	END=16344632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	16344633	.	C	.	.	PASS	END=16344634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	16344635	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:36:60
chr1	16344636	.	A	.	.	PASS	END=16344644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	16344645	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:45:60
chr1	16344646	.	G	.	.	PASS	END=16344650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	16344651	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:42:60
chr1	16344652	.	C	.	.	PASS	END=16344660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	16344661	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:33:60
chr1	16344662	.	G	.	.	PASS	END=16344674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	16344675	.	T	.	.	PASS	END=16344680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	16344681	.	C	.	.	PASS	END=16344683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	16344684	.	G	A	363.01	SB	BaseQRankSum=0.348;DP=24;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=1.159;QD=15.13;ReadPosRankSum=-0.058;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:11,13:24:99:393,0,357:60:99:0.542
chr1	16344685	.	A	.	.	PASS	END=16344702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	16344703	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:24:60
chr1	16344704	.	T	.	.	PASS	END=16344729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	16344730	.	T	C	293.41	SB	BaseQRankSum=-1.373;DP=21;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-0.246;QD=13.97;ReadPosRankSum=-0.528;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:10,11:21:99:323,0,327:60:99:0.524
chr1	16345628	.	C	.	.	LowGQX	END=16345673	GT	./.
chr1	16345674	.	C	.	.	LowGQX	END=16345713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16345714	.	C	.	.	LowGQX	.	GT	./.
chr1	16345715	.	C	.	.	LowGQX	END=16345738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16345739	.	C	.	.	LowGQX	.	GT	./.
chr1	16345740	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16345741	.	A	.	.	LowGQX	.	GT	./.
chr1	16345742	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16345743	.	A	.	.	LowGQX	.	GT	./.
chr1	16345744	.	T	.	.	LowGQX	END=16345754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16345755	.	G	.	.	LowGQX	.	GT	./.
chr1	16345756	.	C	.	.	LowGQX	END=16345781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16345782	.	A	.	.	LowGQX	.	GT	./.
chr1	16345783	.	C	.	.	LowGQX	END=16345794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16345795	.	A	.	.	LowGQX	.	GT	./.
chr1	16345796	.	C	.	.	LowGQX	END=16345802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16345803	.	C	.	.	LowGQX	.	GT	./.
chr1	16345804	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16345805	.	A	.	.	LowGQX	.	GT	./.
chr1	16345806	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16345807	.	A	.	.	LowGQX	END=16345808	GT	./.
chr1	16345809	.	C	.	.	LowGQX	END=16345815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16345816	.	A	.	.	LowGQX	.	GT	./.
chr1	16345817	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16345818	.	A	.	.	LowGQX	.	GT	./.
chr1	16345819	.	T	.	.	LowGQX	END=16345823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16345824	.	C	.	.	LowGQX	END=16345882	GT	./.
chr1	16345883	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16345884	.	T	.	.	LowGQX	.	GT	./.
chr1	16345885	.	G	.	.	LowGQX	END=16345886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16345887	.	T	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	16345888	.	G	.	.	LowGQX	END=16345916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16345917	.	A	.	.	LowGQX	.	GT	./.
chr1	16345918	.	T	.	.	LowGQX	END=16345919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16345920	.	C	.	.	LowGQX	END=16345922	GT	./.
chr1	16345923	.	C	.	.	LowGQX	END=16345924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16345925	.	G	.	.	LowGQX	.	GT	./.
chr1	16345926	.	G	.	.	LowGQX	END=16345934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16345935	.	A	.	.	LowGQX	.	GT	./.
chr1	16345936	.	C	.	.	LowGQX	END=16345964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16349064	.	G	.	.	PASS	END=16349089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	16349090	.	C	.	.	PASS	END=16349182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	16349183	.	C	.	.	PASS	END=16349198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:78:60
chr1	16349199	.	C	.	.	PASS	END=16349222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	16349223	.	C	.	.	PASS	END=16349236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	16349237	.	T	.	.	PASS	END=16349250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	16349251	.	C	.	.	PASS	END=16349255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	16349256	.	A	.	.	PASS	END=16349261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	16349262	.	T	.	.	PASS	END=16349265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	16350244	.	G	.	.	PASS	END=16350274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	16350275	.	A	.	.	PASS	END=16350287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	16350288	.	G	.	.	PASS	END=16350338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	16350339	.	G	.	.	PASS	END=16350398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	16350399	.	T	.	.	PASS	END=16350444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	16350445	.	C	.	.	PASS	END=16350460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	16350461	.	G	.	.	PASS	END=16350474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:96:60
chr1	16351207	.	C	.	.	PASS	END=16351234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	16351235	.	C	.	.	PASS	END=16351319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	16351320	.	G	.	.	PASS	END=16351348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	16351349	.	C	.	.	PASS	END=16351372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	16351373	.	G	.	.	PASS	END=16351387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	16351388	.	T	.	.	PASS	END=16351410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	16351411	.	T	.	.	PASS	END=16351435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr1	16351436	.	T	.	.	PASS	END=16351437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	16352552	.	A	.	.	PASS	END=16352564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	16352565	.	A	.	.	PASS	END=16352595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	16352596	.	G	.	.	PASS	END=16352693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	16352694	.	C	.	.	PASS	END=16352707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	16352708	.	T	.	.	PASS	END=16352746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	16352747	.	G	.	.	PASS	END=16352761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	16352762	.	C	.	.	PASS	END=16352764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	16352765	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:60:60
chr1	16352766	.	C	.	.	PASS	END=16352778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	16352779	.	C	.	.	PASS	END=16352789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	16352790	.	T	.	.	PASS	END=16352793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	16352980	.	G	.	.	PASS	END=16352982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	16352983	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	16352984	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:36:60
chr1	16352985	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	16352986	.	G	.	.	PASS	END=16352987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	16352988	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	16352989	.	T	.	.	PASS	END=16352997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	16352998	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	16352999	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr1	16353000	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	16353001	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:39:60
chr1	16353002	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	16353003	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:36:60
chr1	16353004	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:48:60
chr1	16353005	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	16353006	.	C	.	.	PASS	END=16353014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	16353015	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:21:60
chr1	16353016	.	C	.	.	PASS	END=16353018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	16353019	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr1	16353020	.	T	.	.	PASS	END=16353024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	16353025	.	C	.	.	PASS	END=16353037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	16353038	.	T	.	.	PASS	END=16353043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:59
chr1	16353044	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:63:59
chr1	16353045	.	C	.	.	PASS	END=16353051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:59
chr1	16353052	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:69:59
chr1	16353053	.	T	.	.	PASS	END=16353076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:53
chr1	16353077	.	G	.	.	PASS	END=16353108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:81:45
chr1	16353109	.	G	.	.	PASS	END=16353152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:42
chr1	16353153	.	G	.	.	PASS	END=16353228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:40
chr1	16353229	.	C	.	.	PASS	END=16353269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:93:45
chr1	16353270	.	G	.	.	PASS	END=16353271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:93:54
chr1	16353272	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:57:55
chr1	16353273	.	G	.	.	PASS	END=16353290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:55
chr1	16353291	.	C	.	.	PASS	END=16353301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	16353302	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:45:60
chr1	16353303	.	C	.	.	PASS	END=16353321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	16353754	.	G	.	.	PASS	END=16353766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	16353767	.	G	.	.	PASS	END=16353786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	16353787	.	C	.	.	PASS	END=16353832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	16353833	.	T	.	.	PASS	END=16353913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	16353914	.	C	.	.	PASS	END=16353945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	16353946	.	T	.	.	PASS	END=16353960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	16353961	.	C	.	.	PASS	END=16353981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr1	16354256	.	G	.	.	PASS	END=16354278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:32
chr1	16354279	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:60:32
chr1	16354280	.	G	C	459.79	PASS	BaseQRankSum=0.922;DP=44;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.8408;MQ=32;MQ0=11;MQRankSum=-0.994;QD=10.45;ReadPosRankSum=-0.850;SB=-120.68	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:23,21:44:99:490,0,399:32:99:0.477
chr1	16354281	.	C	.	.	PASS	END=16354303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:69:32
chr1	16354304	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:90:32
chr1	16354305	.	T	.	.	PASS	END=16354306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:69:32
chr1	16354307	.	C	.	.	PASS	END=16354317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:32
chr1	16354318	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:51:24:32
chr1	16354319	.	C	.	.	PASS	END=16354327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:81:31
chr1	16354328	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:68:30
chr1	16354329	.	C	.	.	PASS	END=16354364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:81:30
chr1	16354365	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:66:35
chr1	16354366	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:99:35
chr1	16354367	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:59:35
chr1	16354368	.	C	.	.	PASS	END=16354403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:78:36
chr1	16354404	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:42:41
chr1	16354405	.	G	.	.	PASS	END=16354409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:75:41
chr1	16354410	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:66:42
chr1	16354411	.	G	.	.	PASS	END=16354451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:42
chr1	16354462	.	G	.	.	PASS	END=16354482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:55
chr1	16354483	.	G	.	.	PASS	END=16354525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:59
chr1	16354526	.	G	.	.	PASS	END=16354589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	16354590	.	A	T	1505.84	PASS	BaseQRankSum=2.216;DP=121;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=16.1924;MQ=60;MQ0=0;MQRankSum=1.168;QD=12.44;ReadPosRankSum=2.603;SB=-911.41	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:52,68:121:99:1536,0,1286:60:99:0.567
chr1	16354591	.	C	.	.	PASS	END=16354627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	16354628	.	T	.	.	PASS	END=16354650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	16354651	.	A	.	.	PASS	END=16354665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	16355100	.	A	.	.	PASS	END=16355102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	16355103	.	T	.	.	PASS	END=16355129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	16355130	.	C	.	.	PASS	END=16355149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	16355150	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:15:60
chr1	16355151	.	C	.	.	PASS	END=16355155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	16355156	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:15:60
chr1	16355157	.	G	.	.	PASS	END=16355162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	16355163	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:60:60
chr1	16355164	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:36:60
chr1	16355165	.	G	.	.	PASS	END=16355167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	16355168	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:26:60
chr1	16355169	.	T	.	.	PASS	END=16355175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	16355176	.	G	.	.	PASS	END=16355181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr1	16355182	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:60
chr1	16355183	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:30:60
chr1	16355184	.	C	.	.	PASS	END=16355191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:63:60
chr1	16355192	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:50:60
chr1	16355193	.	C	.	.	PASS	END=16355212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	16355213	.	A	.	.	PASS	END=16355221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	16355222	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:53:60
chr1	16355223	.	G	.	.	PASS	END=16355228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:75:60
chr1	16355229	.	G	.	.	PASS	END=16355244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	16355245	.	A	.	.	PASS	END=16355262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	16355263	.	G	.	.	PASS	END=16355370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	16355371	.	T	.	.	PASS	END=16355391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:92:60
chr1	16355548	.	G	.	.	PASS	END=16355571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:59
chr1	16355572	.	G	.	.	PASS	END=16355586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:54
chr1	16355587	.	C	.	.	PASS	END=16355632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:94:51
chr1	16355633	.	C	.	.	PASS	END=16355710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:49
chr1	16355711	.	C	.	.	PASS	END=16355748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:51
chr1	16355749	.	G	.	.	PASS	END=16355782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:53
chr1	16355783	.	C	.	.	PASS	END=16355795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:57
chr1	16355796	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:72:59
chr1	16355797	.	G	.	.	PASS	END=16355807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:59
chr1	16355808	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:75:60
chr1	16355809	.	C	.	.	PASS	END=16355815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	16355816	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:72:60
chr1	16355817	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:99:60
chr1	16355818	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:72:60
chr1	16355819	.	G	.	.	PASS	END=16355825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	16355826	.	G	.	.	PASS	END=16355831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	16355832	.	A	.	.	PASS	END=16355837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	16355838	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	16355839	.	C	.	.	PASS	END=16355842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	16355843	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:42:60
chr1	16355844	.	G	.	.	PASS	END=16355854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	16356175	.	C	.	.	PASS	END=16356211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	16356212	.	C	.	.	PASS	END=16356254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:59
chr1	16356255	.	C	.	.	PASS	END=16356309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	16356310	.	C	.	.	PASS	END=16356346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	16356409	.	C	.	.	PASS	END=16356441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	16356442	.	C	.	.	PASS	END=16356557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	16356558	.	T	.	.	PASS	END=16356590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	16356591	.	C	.	.	PASS	END=16356610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	16356611	.	G	.	.	PASS	END=16356621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:59
chr1	16356905	.	C	.	.	PASS	END=16356935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	16356936	.	G	.	.	PASS	END=16356974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	16356975	.	G	.	.	PASS	END=16357028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:59
chr1	16357029	.	G	.	.	PASS	END=16357110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:55
chr1	16357111	.	G	.	.	PASS	END=16357140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:53
chr1	16357141	.	C	.	.	PASS	END=16357182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:52
chr1	16357183	.	A	.	.	PASS	END=16357201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:54
chr1	16357202	.	G	.	.	PASS	END=16357204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:57
chr1	16357205	.	T	.	183.45	PASS	DP=105;MQ=57;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:83:105:99:57:99
chr1	16357206	.	C	.	.	PASS	END=16357220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:57
chr1	16358154	.	G	.	.	PASS	END=16358190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:87:60
chr1	16358191	.	C	.	.	PASS	END=16358245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	16358246	.	T	.	.	PASS	END=16358331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	16358332	.	A	.	.	PASS	END=16358372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	16358373	.	A	.	.	PASS	END=16358389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	16358647	.	G	.	.	PASS	END=16358680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	16358681	.	C	.	.	PASS	END=16358684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	16358685	.	C	G	1586.53	PASS	BaseQRankSum=0.789;DP=150;Dels=0.00;FS=0.644;HRun=0;HaplotypeScore=17.2555;MQ=60;MQ0=0;MQRankSum=-0.421;QD=10.58;ReadPosRankSum=0.247;SB=-664.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:85,65:150:99:1617,0,2062:60:99:0.433
chr1	16358686	.	T	.	.	PASS	END=16358746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	16358747	.	C	.	.	PASS	END=16358783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	16358784	.	C	.	.	PASS	END=16358804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	16358805	.	C	.	.	PASS	END=16358837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:59
chr1	16358887	.	A	.	.	PASS	END=16358912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	16358913	.	A	.	.	PASS	END=16358931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	16358932	.	T	C	1791.66	PASS	BaseQRankSum=0.872;DP=179;Dels=0.00;FS=1.890;HRun=3;HaplotypeScore=17.9915;MQ=60;MQ0=0;MQRankSum=-0.402;QD=10.01;ReadPosRankSum=0.769;SB=-1061.51	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:101,77:179:99:1822,0,2594:60:99:0.433
chr1	16358933	.	C	.	.	PASS	END=16359022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	16359023	.	T	.	.	PASS	END=16359042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	16359043	.	G	.	.	PASS	END=16359051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	16359052	.	A	G	858.77	PASS	BaseQRankSum=0.465;DP=88;Dels=0.00;FS=0.927;HRun=1;HaplotypeScore=16.1597;MQ=60;MQ0=0;MQRankSum=-1.043;QD=9.76;ReadPosRankSum=-0.289;SB=-351.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:48,40:88:99:889,0,1160:60:99:0.455
chr1	16359053	.	G	.	.	PASS	END=16359068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	16359069	.	A	.	.	PASS	END=16359072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	16359614	.	T	.	.	PASS	END=16359707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	16359708	.	T	.	.	PASS	END=16359731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	16359732	.	G	.	.	PASS	END=16359746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	16359747	.	T	.	.	PASS	END=16359760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	16359761	.	T	.	.	PASS	END=16359770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	16359771	.	A	.	.	PASS	END=16359777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	16359778	.	A	.	.	PASS	END=16359780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	16359781	.	A	.	.	PASS	END=16359789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	16359790	.	A	.	.	PASS	END=16359795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	16359796	.	G	.	.	PASS	END=16359802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	16360055	.	C	.	.	PASS	END=16360060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:55
chr1	16360061	.	C	.	.	PASS	END=16360064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:55
chr1	16360065	.	T	.	.	PASS	END=16360067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:55
chr1	16360068	.	A	.	.	PASS	END=16360070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:54
chr1	16360071	.	T	.	.	PASS	END=16360072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:54
chr1	16360073	.	C	.	.	PASS	END=16360080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:55
chr1	16360081	.	C	.	.	PASS	END=16360093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:53
chr1	16360094	.	T	.	.	PASS	END=16360098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:52
chr1	16360099	.	G	.	.	PASS	END=16360171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:47
chr1	16360172	.	A	.	.	PASS	END=16360201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:60:43
chr1	16360202	.	G	.	.	PASS	END=16360203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:57:43
chr1	16360204	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:39:42
chr1	16370937	.	G	.	.	PASS	END=16370976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	16370977	.	C	.	.	PASS	END=16371048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	16371049	.	T	.	.	PASS	END=16371076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	16371077	.	A	.	.	PASS	END=16371111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	16371112	.	C	.	.	PASS	END=16371123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	16371124	.	C	.	.	PASS	END=16371132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	16371133	.	A	.	.	PASS	END=16371138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	16372002	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:72:60
chr1	16372003	.	G	.	.	PASS	END=16372015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	16372016	.	G	.	.	PASS	END=16372046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:91:60
chr1	16372047	.	C	.	.	PASS	END=16372144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	16372145	.	T	.	.	PASS	END=16372166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	16372167	.	A	.	.	PASS	END=16372176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	16372177	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:75:60
chr1	16372178	.	C	.	.	PASS	END=16372187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	16372188	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:66:60
chr1	16372189	.	C	.	.	PASS	END=16372203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	16372204	.	T	.	.	PASS	END=16372213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	16372214	.	C	.	.	PASS	END=16372232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	16372979	.	C	.	.	PASS	END=16373002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	16373003	.	G	.	.	PASS	END=16373101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	16373102	.	T	.	.	PASS	END=16373123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	16373124	.	A	G	2008.13	PASS	BaseQRankSum=1.379;DP=164;Dels=0.00;FS=6.062;HRun=2;HaplotypeScore=9.5117;MQ=60;MQ0=0;MQRankSum=0.387;QD=12.24;ReadPosRankSum=0.612;SB=-902.58	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:83,80:164:99:2038,0,1907:60:99:0.491
chr1	16373125	.	G	.	.	PASS	END=16373156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	16373157	.	A	.	.	PASS	END=16373171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	16373172	.	C	.	.	PASS	END=16373199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	16373199	.	CCTT	C	1573.34	PASS	BaseQRankSum=6.157;DP=71;FS=0.000;HRun=0;HaplotypeScore=190.1402;MQ=60;MQ0=0;MQRankSum=-0.105;QD=22.16;ReadPosRankSum=-0.056;SB=-482.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:40,30:71:99:1612,0,2060:60:99:0.429
chr1	16373200	.	C	.	123.27	PASS	DP=70;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:40:40:93.28:60:93
chr1	16373201	.	T	.	123.29	PASS	DP=68;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:38:38:93.30:60:93
chr1	16373202	.	T	.	120.28	PASS	DP=68;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:38:38:90.28:60:90
chr1	16373203	.	C	.	.	PASS	END=16373209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	16374349	.	A	.	.	PASS	END=16374361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	16374362	.	A	.	.	PASS	END=16374415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	16374416	.	G	.	.	PASS	END=16374489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	16374490	.	G	.	.	PASS	END=16374504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	16374505	.	T	.	.	PASS	END=16374527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:60
chr1	16374528	.	C	.	.	PASS	END=16374532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	16374533	.	G	C	310.14	PASS	BaseQRankSum=1.687;DP=40;Dels=0.00;FS=3.507;HRun=0;HaplotypeScore=5.7870;MQ=60;MQ0=0;MQRankSum=-0.978;QD=7.75;ReadPosRankSum=-1.404;SB=-153.75	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,14:40:99:340,0,763:60:99:0.350
chr1	16374534	.	A	.	.	PASS	END=16374552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	16374553	.	T	.	.	PASS	END=16374559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	16374560	.	A	.	.	PASS	END=16374563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	16374564	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:30:60
chr1	16374565	.	A	.	.	PASS	END=16374577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	16374578	.	A	.	.	PASS	END=16374582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	16374583	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:23:60
chr1	16374584	.	G	.	.	PASS	END=16374590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	16374787	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:30:60
chr1	16374788	.	C	.	.	PASS	END=16374793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	16374794	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:63:60
chr1	16374795	.	T	.	.	PASS	END=16374798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	16374799	.	G	.	.	PASS	END=16374803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	16374804	.	C	.	.	PASS	END=16374810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	16374811	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:99:60
chr1	16374812	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:66:60
chr1	16374813	.	C	.	.	PASS	END=16374820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	16374821	.	C	.	.	PASS	END=16374822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:57:60
chr1	16374823	.	C	.	.	PASS	END=16374855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	16374856	.	T	.	.	PASS	END=16374892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:96:54
chr1	16374893	.	C	.	.	PASS	END=16374897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:96:53
chr1	16374898	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:75:74:53
chr1	16374899	.	C	.	.	PASS	END=16374961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:86:46
chr1	16374962	.	G	.	.	PASS	END=16374993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:44
chr1	16374994	.	C	T	872.44	PASS	BaseQRankSum=0.764;DP=107;Dels=0.00;FS=3.234;HRun=0;HaplotypeScore=15.2029;MQ=45;MQ0=22;MQRankSum=-0.240;QD=8.15;ReadPosRankSum=0.167;SB=-314.10	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:64,42:107:99:902,0,1093:45:99:0.396
chr1	16374995	.	C	.	.	PASS	END=16375023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:45
chr1	16375024	.	T	.	.	PASS	END=16375026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:46
chr1	16375027	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:80:75:46
chr1	16375028	.	G	.	.	PASS	END=16375062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:46
chr1	16375063	.	C	G	689.84	PASS	BaseQRankSum=2.734;DP=68;Dels=0.00;FS=2.932;HRun=1;HaplotypeScore=18.0923;MQ=52;MQ0=7;MQRankSum=-1.204;QD=10.14;ReadPosRankSum=-0.104;SB=-113.22	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:39,28:68:99:720,0,817:52:99:0.418
chr1	16375064	.	A	C	756.54	PASS	BaseQRankSum=1.460;DP=67;Dels=0.00;FS=1.530;HRun=1;HaplotypeScore=18.1427;MQ=52;MQ0=7;MQRankSum=0.304;QD=11.29;ReadPosRankSum=-0.363;SB=-87.34	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,29:67:99:787,0,730:52:99:0.433
chr1	16375065	.	G	.	.	PASS	END=16375084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:81:52
chr1	16375085	.	C	.	.	PASS	END=16375101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:58
chr1	16375102	.	C	.	.	PASS	END=16375107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	16375108	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:72:60
chr1	16375109	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:96:60
chr1	16375110	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:59:60
chr1	16375111	.	C	.	.	PASS	END=16375113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	16375114	.	A	.	.	PASS	END=16375117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	16375118	.	T	.	.	PASS	END=16375120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:59
chr1	16375121	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:57:60
chr1	16375122	.	C	.	.	PASS	END=16375125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	16375126	.	T	.	.	PASS	END=16375127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	16375128	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:63:60
chr1	16375466	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:60:60
chr1	16375467	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:60
chr1	16375468	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:48:60
chr1	16375469	.	G	.	.	PASS	END=16375470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	16375471	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:33:60
chr1	16375472	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:75:60
chr1	16375473	.	T	.	.	PASS	END=16375475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	16375476	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:33:60
chr1	16375477	.	C	.	.	PASS	END=16375478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	16375479	.	C	.	.	PASS	END=16375485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	16375486	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:75:60
chr1	16375487	.	G	.	.	PASS	END=16375509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	16375510	.	G	A	470.08	PASS	BaseQRankSum=-1.986;DP=40;Dels=0.00;FS=3.144;HRun=1;HaplotypeScore=10.5216;MQ=60;MQ0=0;MQRankSum=-0.634;QD=11.75;ReadPosRankSum=-0.268;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:18,21:40:99:500,0,552:60:99:0.538
chr1	16375511	.	A	.	.	PASS	END=16375532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	16375533	.	G	.	.	PASS	END=16375571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	16375572	.	G	.	.	PASS	END=16375583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	16375584	.	A	.	.	PASS	END=16375597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	16375598	.	A	.	.	PASS	END=16375670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	16375671	.	A	.	.	PASS	END=16375715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	16375716	.	C	.	.	PASS	END=16375747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	16375748	.	C	.	.	PASS	END=16375765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	16375766	.	T	.	.	PASS	END=16375782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	16375783	.	C	.	.	PASS	END=16375791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	16376053	.	G	.	.	PASS	END=16376069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:45:31
chr1	16376070	.	G	.	.	PASS	END=16376072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:51:31
chr1	16376073	.	G	.	.	PASS	END=16376075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:45:31
chr1	16376076	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:36:14:31
chr1	16376077	.	G	.	.	PASS	END=16376081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:51:31
chr1	16376082	.	A	.	.	PASS	END=16376083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:45:31
chr1	16376084	.	C	.	.	PASS	END=16376098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:54:31
chr1	16376099	.	C	.	.	PASS	END=16376112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:51:27
chr1	16376113	.	A	.	.	PASS	END=16376114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:42:28
chr1	16376115	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:39:14:28
chr1	16376116	.	C	.	.	PASS	END=16376123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:54:28
chr1	16376124	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:48:28
chr1	16376125	.	C	.	.	PASS	END=16376136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:60:28
chr1	16376137	.	C	.	.	PASS	END=16376148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:54:28
chr1	16376149	.	T	.	.	PASS	END=16376154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:48:27
chr1	16376155	.	T	.	.	PASS	END=16376156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:45:27
chr1	16376157	.	C	.	.	PASS	END=16376163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:54:28
chr1	16376164	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:45:28
chr1	16376165	.	C	.	.	PASS	END=16376166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:57:28
chr1	16376167	.	T	.	.	PASS	END=16376168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:42:29
chr1	16376169	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:39:18:30
chr1	16376170	.	C	.	.	PASS	END=16376174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:57:30
chr1	16376175	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:43:29:34
chr1	16376176	.	T	.	.	PASS	END=16376182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:48:34
chr1	16376183	.	T	.	.	PASS	END=16376190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:51:37
chr1	16376191	.	C	T	220.11	PASS	BaseQRankSum=0.231;DP=38;Dels=0.00;FS=1.871;HRun=0;HaplotypeScore=5.7319;MQ=40;MQ0=11;MQRankSum=1.157;QD=5.79;ReadPosRankSum=-0.849;SB=-78.36	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:19,18:38:99:250,0,278:40:99:0.486
chr1	16376192	.	G	.	.	PASS	END=16376198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:57:40
chr1	16376199	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:48:42
chr1	16376200	.	G	.	.	PASS	END=16376202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:60:42
chr1	16376203	.	T	.	.	PASS	END=16376206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:51:42
chr1	16376207	.	T	.	.	PASS	END=16376208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:45:42
chr1	16376209	.	C	.	.	PASS	END=16376220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:57:43
chr1	16376221	.	G	.	.	PASS	END=16376230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:60:46
chr1	16376230	.	A	AT	575.92	PASS	BaseQRankSum=3.339;DP=37;FS=3.816;HRun=0;HaplotypeScore=290.2962;MQ=47;MQ0=8;MQRankSum=1.080;QD=15.57;ReadPosRankSum=-0.778;SB=-179.57	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:17,20:27:99:615,0,347:47:99:0.541
chr1	16376231	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:47
chr1	16376232	.	A	T	447.31	PASS	BaseQRankSum=2.225;DP=37;Dels=0.00;FS=2.315;HRun=0;HaplotypeScore=22.0282;MQ=47;MQ0=8;MQRankSum=1.910;QD=12.09;ReadPosRankSum=-0.607;SB=-165.96	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:17,20:37:72.24:477,0,72:47:72:0.541
chr1	16376233	.	G	.	.	PASS	END=16376238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:60:47
chr1	16376238	.	TC	T	575.08	PASS	BaseQRankSum=3.571;DP=42;FS=8.139;HRun=6;HaplotypeScore=332.3555;MQ=50;MQ0=8;MQRankSum=1.094;QD=13.69;ReadPosRankSum=-0.640;SB=-185.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:20,22:32:99:614,0,299:50:99:0.524
chr1	16376239	.	C	.	60.08	PASS	DP=42;MQ=50;MQ0=8	GT:AD:DP:GQ:MQ:GQX	0:19:20:30.09:50:30
chr1	16376240	.	C	.	.	PASS	END=16376246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:60:50
chr1	16376247	.	G	.	.	PASS	END=16376248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:75:51
chr1	16376259	.	G	.	.	PASS	END=16376277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:55
chr1	16376278	.	G	A	707.97	PASS	BaseQRankSum=1.213;DP=44;Dels=0.00;FS=1.328;HRun=0;HaplotypeScore=3.8399;MQ=59;MQ0=0;MQRankSum=0.099;QD=16.09;ReadPosRankSum=0.124;SB=-456.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:15,29:44:99:738,0,355:59:99:0.659
chr1	16376279	.	G	.	.	PASS	END=16376281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:59
chr1	16376282	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:75:59
chr1	16376283	.	C	.	.	PASS	END=16376303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:59
chr1	16376304	.	C	.	.	PASS	END=16376318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	16376319	.	T	C	788.81	PASS	BaseQRankSum=1.936;DP=66;Dels=0.00;FS=2.095;HRun=0;HaplotypeScore=5.7768;MQ=60;MQ0=0;MQRankSum=0.205;QD=11.95;ReadPosRankSum=2.103;SB=-440.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,33:66:99:819,0,915:60:99:0.500
chr1	16376320	.	G	.	.	PASS	END=16376449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	16376450	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:75:60
chr1	16376451	.	T	.	.	PASS	END=16376457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	16376458	.	T	C	221.42	PASS	BaseQRankSum=-0.044;DP=51;Dels=0.00;FS=0.000;HRun=6;HaplotypeScore=10.5211;MQ=60;MQ0=0;MQRankSum=0.730;QD=4.34;ReadPosRankSum=-0.553;SB=-76.92	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:37,13:51:99:251,0,872:60:99:0.260
chr1	16376459	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:99:60
chr1	16376460	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:63:60
chr1	16376461	.	C	.	.	PASS	END=16376462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	16376960	.	T	.	.	PASS	END=16376983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	16376984	.	G	.	.	PASS	END=16377017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	16377018	.	G	.	.	PASS	END=16377125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	16377126	.	G	.	.	PASS	END=16377146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	16377319	.	G	.	.	PASS	END=16377350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:56
chr1	16377351	.	C	.	.	PASS	END=16377474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:50
chr1	16377475	.	C	.	.	PASS	END=16377492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:52
chr1	16377493	.	C	.	.	PASS	END=16377514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:54
chr1	16377515	.	G	.	.	PASS	END=16377544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:57
chr1	16377545	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:57:59
chr1	16377546	.	G	.	.	PASS	END=16377556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:59
chr1	16377557	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:72:60
chr1	16377558	.	C	.	.	PASS	END=16377564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	16377565	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:60:60
chr1	16377566	.	G	.	.	PASS	END=16377571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	16377572	.	A	.	.	PASS	END=16377576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	16377577	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:42:60
chr1	16377578	.	G	.	.	PASS	END=16377586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	16377587	.	T	.	.	PASS	END=16377594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	16377922	.	C	.	.	PASS	END=16377958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:87:60
chr1	16377959	.	C	.	.	PASS	END=16377981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	16377982	.	C	.	.	PASS	END=16378051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	16378052	.	G	.	.	PASS	END=16378093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	16378154	.	C	.	.	PASS	END=16378186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	16378187	.	C	.	.	PASS	END=16378313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	16378314	.	A	.	.	PASS	END=16378331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	16378332	.	C	.	.	PASS	END=16378366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:59
chr1	16378642	.	C	.	.	PASS	END=16378648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	16378649	.	C	G	1063.03	PASS	BaseQRankSum=1.483;DP=107;Dels=0.00;FS=0.911;HRun=2;HaplotypeScore=15.2562;MQ=60;MQ0=0;MQRankSum=-0.593;QD=9.93;ReadPosRankSum=-0.458;SB=-270.33	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:66,41:107:99:1093,0,1861:60:99:0.383
chr1	16378650	.	T	.	.	PASS	END=16378672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	16378673	.	G	.	.	PASS	END=16378726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	16378727	.	C	.	.	PASS	END=16378868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:54
chr1	16378869	.	C	.	.	PASS	END=16378922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:53
chr1	16378923	.	T	.	.	PASS	END=16378943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:56
chr1	16378944	.	A	.	.	PASS	END=16378957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:58
chr1	16380083	.	G	.	.	PASS	END=16380086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	16380087	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:70:60
chr1	16380088	.	T	.	.	PASS	END=16380119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:96:60
chr1	16380120	.	C	.	.	PASS	END=16380195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:55
chr1	16380196	.	T	C	2008.40	PASS	DP=72;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=55;MQ0=0;QD=27.89;SB=-999.60	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,72:72:99:2041,156,0:55:99:1.000
chr1	16380197	.	G	.	.	PASS	END=16380237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:53
chr1	16380238	.	T	.	.	PASS	END=16380242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:96:51
chr1	16380243	.	A	G	1539.44	PASS	DP=55;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=51;MQ0=0;QD=27.99;SB=-905.73	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,55:55:99:1572,117,0:51:99:1.000
chr1	16380244	.	A	.	.	PASS	END=16380250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:51
chr1	16380251	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:73:51
chr1	16380252	.	C	T	1503.18	PASS	DP=54;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=4.7346;MQ=51;MQ0=0;QD=27.84;SB=-813.47	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,54:54:99:1536,114,0:51:99:1.000
chr1	16380253	.	T	.	.	PASS	END=16380288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:46
chr1	16380289	.	G	.	.	PASS	END=16380303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:45
chr1	16380304	.	G	.	.	PASS	END=16380307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:45
chr1	16380308	.	T	.	.	PASS	END=16380313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:45
chr1	16380314	.	C	.	.	PASS	END=16380315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:46
chr1	16380316	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:33:46
chr1	16380317	.	C	.	.	PASS	END=16380318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:46
chr1	16381879	.	T	.	.	PASS	END=16381888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	16381889	.	C	.	.	PASS	END=16381994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	16381995	.	C	.	.	PASS	END=16382026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	16382027	.	T	.	.	PASS	END=16382034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	16382035	.	G	.	.	PASS	END=16382053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	16382054	.	G	.	.	PASS	END=16382060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	16382061	.	C	.	.	PASS	END=16382069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	16382119	.	A	.	.	PASS	END=16382169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	16382170	.	C	.	.	PASS	END=16382272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	16382273	.	A	.	.	PASS	END=16382296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	16382297	.	T	.	.	PASS	END=16382304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	16382866	.	G	.	.	PASS	END=16382876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	16382877	.	A	G	1240.87	PASS	BaseQRankSum=1.546;DP=112;Dels=0.00;FS=3.991;HRun=0;HaplotypeScore=20.0333;MQ=60;MQ0=0;MQRankSum=0.313;QD=11.08;ReadPosRankSum=0.764;SB=-733.52	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:49,61:112:99:1271,0,921:60:99:0.555
chr1	16382878	.	C	.	.	PASS	END=16382973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	16382974	.	A	.	.	PASS	END=16382985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	16382986	.	T	.	.	PASS	END=16382999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	16383000	.	G	.	.	PASS	END=16383012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	16383013	.	T	.	.	PASS	END=16383022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	16383023	.	A	.	.	PASS	END=16383031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	16383032	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:18:60
chr1	16383033	.	A	.	.	PASS	END=16383037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	16383038	.	A	.	.	PASS	END=16383041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	16383042	.	A	.	.	PASS	END=16383049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	16383050	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	16383051	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	16383052	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	16383053	.	G	.	.	PASS	END=16383054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	16383313	.	C	.	.	PASS	END=16383316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:56
chr1	16383317	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:56
chr1	16383318	.	C	.	.	PASS	END=16383324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:55
chr1	16383325	.	T	.	.	PASS	END=16383326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:55
chr1	16383327	.	C	.	.	PASS	END=16383328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:55
chr1	16383329	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:36:55
chr1	16383329	.	T	TC	56.26	SB	BaseQRankSum=3.026;DP=20;FS=0.000;HRun=6;HaplotypeScore=92.4480;MQ=55;MQ0=1;MQRankSum=-0.745;QD=2.81;ReadPosRankSum=0.658;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:14,5:19:95.29:95,0,393:55:56:0.263
chr1	16383330	.	C	.	.	PASS	END=16383335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:51
chr1	16383336	.	G	C	156.18	PASS	BaseQRankSum=1.014;DP=26;Dels=0.04;FS=0.000;HRun=6;HaplotypeScore=4.7873;MQ=51;MQ0=2;MQRankSum=-2.504;QD=6.01;ReadPosRankSum=-1.193;SB=-19.68	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:15,10:25:99:186,0,338:51:99:0.400
chr1	16383337	.	C	.	.	PASS	END=16383338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:52
chr1	16383339	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:24:50
chr1	16383340	.	C	.	.	PASS	END=16383346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:49
chr1	16383347	.	C	.	.	PASS	END=16383354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:48
chr1	16383355	.	C	.	.	PASS	END=16383356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:48
chr1	16383357	.	G	.	.	PASS	END=16383421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:84:46
chr1	16383422	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:61:46
chr1	16383423	.	A	.	.	PASS	END=16383436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:84:44
chr1	16383437	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:58:44
chr1	16383438	.	A	.	.	PASS	END=16383442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:93:44
chr1	16383443	.	A	.	.	PASS	END=16383447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:75:44
chr1	16383448	.	A	C	1218.00	PASS	DP=51;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=10.4689;MQ=44;MQ0=2;QD=23.88;SB=-733.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,50:51:96.30:1251,96,0:44:96:1.000
chr1	16383449	.	C	.	.	PASS	END=16383461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:75:43
chr1	16383462	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:60:43
chr1	16383681	.	G	.	.	LowGQX	END=16383689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:36
chr1	16383690	.	A	.	.	LowGQX	END=16383691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:39
chr1	16383692	.	T	.	.	LowGQX	END=16383693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:41
chr1	16383694	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:41
chr1	16383695	.	T	.	.	LowGQX	END=16383697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:41
chr1	16383698	.	A	.	.	LowGQX	END=16383704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:41
chr1	16383705	.	G	.	.	LowGQX	END=16383708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:41
chr1	16383709	.	G	.	.	LowGQX	END=16383713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:41
chr1	16383714	.	A	.	.	LowGQX	END=16383718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:41
chr1	16383719	.	G	.	.	LowGQX	END=16383725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:43
chr1	16383726	.	A	.	.	LowGQX	END=16383733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:51
chr1	16383734	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16383735	.	A	.	.	LowGQX	END=16383741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16383742	.	C	G	9.80	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=4.90;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,1:2:3.01:39,3,0:60:3:0.500
chr1	16383743	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16383744	.	T	.	.	LowGQX	END=16383748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16383749	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16383750	.	G	.	.	LowGQX	END=16383754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16383755	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16383756	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16383757	.	T	.	.	LowGQX	END=16383772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16383773	.	G	.	.	LowGQX	.	GT	./.
chr1	16383774	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16383775	.	T	.	.	LowGQX	END=16383776	GT	./.
chr1	16383777	.	C	.	.	LowGQX	END=16383778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16383779	.	G	.	.	LowGQX	END=16383780	GT	./.
chr1	16384919	.	C	.	.	LowGQX	END=16384929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	16384930	.	C	.	.	LowGQX	.	GT	./.
chr1	16384931	.	C	.	.	LowGQX	END=16384936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	16384937	.	T	.	.	LowGQX	.	GT	./.
chr1	16384938	.	A	.	.	LowGQX	END=16384946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	16384947	.	C	.	.	LowGQX	.	GT	./.
chr1	16384948	.	T	.	.	LowGQX	END=16384954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	16384955	.	C	.	.	LowGQX	.	GT	./.
chr1	16384956	.	C	.	.	LowGQX	END=16384976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	16384977	.	C	.	.	LowGQX	.	GT	./.
chr1	16384978	.	A	.	.	LowGQX	END=16384979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	16384980	.	G	.	.	LowGQX	.	GT	./.
chr1	16384981	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:21
chr1	16384982	.	A	.	.	LowGQX	.	GT	./.
chr1	16384983	.	G	.	.	LowGQX	END=16384992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	16384993	.	C	.	.	LowGQX	END=16385020	GT	./.
chr1	16385021	.	C	.	.	LowGQX	END=16385031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	16385032	.	G	.	.	LowGQX	.	GT	./.
chr1	16385033	.	G	.	.	LowGQX	END=16385041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	16385042	.	G	.	.	LowGQX	.	GT	./.
chr1	16385043	.	C	.	.	LowGQX	END=16385044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	16385045	.	G	.	.	LowGQX	.	GT	./.
chr1	16385046	.	A	.	.	LowGQX	END=16385069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	16385070	.	C	.	.	LowGQX	.	GT	./.
chr1	16385071	.	T	.	.	LowGQX	END=16385084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	16385085	.	G	.	.	LowGQX	.	GT	./.
chr1	16385086	.	G	.	.	LowGQX	END=16385087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	16385088	.	G	.	.	LowGQX	.	GT	./.
chr1	16385089	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:21
chr1	16385090	.	T	.	.	LowGQX	.	GT	./.
chr1	16385091	.	G	.	.	LowGQX	END=16385113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	16385114	.	A	.	.	LowGQX	.	GT	./.
chr1	16385115	.	G	.	.	LowGQX	END=16385130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	16385131	.	C	.	5.68	LowGQX	DP=1;MQ=21;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:21:0
chr1	16385132	.	T	.	.	LowGQX	END=16385168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	16385169	.	G	.	.	LowGQX	END=16385218	GT	./.
chr1	16385987	.	A	.	.	LowGQX	END=16386101	GT	./.
chr1	16386351	.	C	.	.	LowGQX	END=16386548	GT	./.
chr1	16388531	.	A	.	.	LowGQX	END=16388690	GT	./.
chr1	16388962	.	C	.	.	LowGQX	END=16388980	GT	./.
chr1	16388981	.	C	.	.	LowGQX	END=16389061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16389973	.	A	.	.	LowGQX	END=16390133	GT	./.
chr1	16399817	.	G	.	.	LowGQX	END=16399976	GT	./.
chr1	16451659	.	T	.	.	PASS	END=16451689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	16451690	.	G	.	.	PASS	END=16451719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	16451720	.	A	.	.	PASS	END=16451781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	16451782	.	G	.	.	PASS	END=16451823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	16451824	.	C	.	.	PASS	END=16451843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	16451844	.	T	.	.	PASS	END=16451855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	16451856	.	G	.	.	PASS	END=16451862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	16451863	.	A	.	.	PASS	END=16451866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	16455878	.	T	.	.	PASS	END=16455908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:93:60
chr1	16455909	.	C	.	.	PASS	END=16455932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	16455933	.	T	.	.	PASS	END=16455968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	16455969	.	C	.	.	PASS	END=16456083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	16456084	.	G	.	.	PASS	END=16456114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	16456115	.	T	.	.	PASS	END=16456135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	16456660	.	T	.	.	PASS	END=16456693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	16456694	.	A	.	.	PASS	END=16456725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	16456726	.	G	.	.	PASS	END=16456825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	16456826	.	T	.	.	PASS	END=16456875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	16456876	.	T	.	.	PASS	END=16456892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	16456893	.	C	.	.	PASS	END=16456931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	16456932	.	T	.	84.15	PASS	DP=48;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:35:48:54.16:60:54
chr1	16456933	.	C	.	.	PASS	END=16456943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	16456944	.	T	.	.	PASS	END=16456946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	16456947	.	C	.	.	PASS	END=16456951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	16456952	.	A	.	.	PASS	END=16456953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:69:60
chr1	16456954	.	C	.	.	PASS	END=16456965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	16458165	.	A	.	.	PASS	END=16458189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	16458190	.	G	.	.	PASS	END=16458213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	16458214	.	A	.	.	PASS	END=16458234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	16458235	.	C	.	.	PASS	END=16458254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	16458255	.	G	.	.	PASS	END=16458384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	16458385	.	A	.	.	PASS	END=16458400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	16458401	.	T	.	.	PASS	END=16458416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	16458508	.	C	.	.	PASS	END=16458578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:81:60
chr1	16458579	.	C	.	.	PASS	END=16458595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:85:60
chr1	16458596	.	A	.	.	PASS	END=16458629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	16458630	.	C	.	.	PASS	END=16458739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	16458740	.	T	.	.	PASS	END=16458819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	16458822	.	C	.	.	PASS	END=16458884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	16458885	.	G	.	.	PASS	END=16458926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	16458927	.	G	.	.	PASS	END=16458950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	16458951	.	A	.	.	PASS	END=16458972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	16458973	.	C	.	.	PASS	END=16458985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:93:60
chr1	16459624	.	C	.	.	PASS	END=16459640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	16459641	.	T	.	.	PASS	END=16459650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	16459651	.	G	.	.	PASS	END=16459685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	16459686	.	A	.	.	PASS	END=16459699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	16459700	.	G	.	.	PASS	END=16459769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	16459770	.	G	.	.	PASS	END=16459835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	16459836	.	A	.	.	PASS	END=16459853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	16459854	.	C	.	.	PASS	END=16459914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	16459925	.	G	.	.	PASS	END=16459967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	16459968	.	A	.	.	PASS	END=16460065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	16460066	.	G	.	.	PASS	END=16460095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	16460096	.	G	.	.	PASS	END=16460152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	16460304	.	G	.	.	PASS	END=16460322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	16460323	.	G	.	.	PASS	END=16460370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	16460371	.	A	.	.	PASS	END=16460454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	16460455	.	G	.	.	PASS	END=16460461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	16460912	.	C	.	.	PASS	END=16460921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	16460922	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:74:60
chr1	16460923	.	C	.	.	PASS	END=16460949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:82:60
chr1	16460950	.	G	.	.	PASS	END=16461012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	16461013	.	A	.	.	PASS	END=16461072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	16461073	.	A	.	.	PASS	END=16461110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	16461111	.	A	.	.	PASS	END=16461113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	16461480	.	T	.	.	PASS	END=16461492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	16461493	.	G	.	.	PASS	END=16461509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	16461510	.	G	.	.	PASS	END=16461525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	16461526	.	C	.	.	PASS	END=16461654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	16461655	.	G	.	.	PASS	END=16461671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	16461672	.	T	.	.	PASS	END=16461683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	16461684	.	C	.	.	PASS	END=16461719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	16461720	.	A	.	.	PASS	END=16461735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	16462067	.	G	.	.	PASS	END=16462094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	16462095	.	G	.	.	PASS	END=16462122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	16462123	.	A	.	.	PASS	END=16462218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	16462219	.	G	.	.	PASS	END=16462239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	16462240	.	G	.	.	PASS	END=16462256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	16462257	.	T	.	.	PASS	END=16462271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:90:60
chr1	16462272	.	A	.	.	PASS	END=16462282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	16462283	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:63:60
chr1	16462284	.	G	.	.	PASS	END=16462287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	16462288	.	G	.	.	PASS	END=16462290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	16462291	.	G	.	.	PASS	END=16462295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	16462296	.	T	.	.	PASS	END=16462303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	16462304	.	T	.	.	PASS	END=16462305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	16462306	.	C	.	.	PASS	END=16462313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	16462314	.	C	.	.	PASS	END=16462316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	16464297	.	G	.	.	PASS	END=16464299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:84:60
chr1	16464300	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:45:60
chr1	16464301	.	C	.	.	PASS	END=16464311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	16464312	.	G	.	.	PASS	END=16464327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr1	16464328	.	C	.	.	PASS	END=16464329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	16464330	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:75:60
chr1	16464331	.	C	.	.	PASS	END=16464332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:87:60
chr1	16464333	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:75:60
chr1	16464334	.	C	.	.	PASS	END=16464364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	16464365	.	A	.	.	PASS	END=16464394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	16464395	.	A	.	.	PASS	END=16464449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	16464450	.	G	.	.	PASS	END=16464495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	16464496	.	A	.	.	PASS	END=16464530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	16464531	.	C	.	.	PASS	END=16464579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:87:60
chr1	16464580	.	A	.	.	PASS	END=16464660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	16464661	.	G	.	.	PASS	END=16464672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	16464673	.	G	A	946.24	PASS	BaseQRankSum=1.412;DP=68;Dels=0.00;FS=2.931;HRun=1;HaplotypeScore=8.6805;MQ=60;MQ0=0;MQRankSum=-0.584;QD=13.92;ReadPosRankSum=-0.370;SB=-113.21	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,32:68:99:976,0,997:60:99:0.478
chr1	16464674	.	G	.	.	PASS	END=16464702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:98:60
chr1	16464703	.	T	.	.	PASS	END=16464729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	16464730	.	C	.	.	PASS	END=16464746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	16464747	.	C	.	.	PASS	END=16464778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	16464779	.	G	.	.	PASS	END=16464885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	16464886	.	C	.	.	PASS	END=16464919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	16464920	.	A	.	.	PASS	END=16464941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	16464942	.	A	.	.	PASS	END=16464957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	16464958	.	C	.	.	PASS	END=16464976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	16474822	.	G	.	.	LowGQX	END=16474826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16474827	.	T	.	.	LowGQX	.	GT	./.
chr1	16474828	.	G	.	.	LowGQX	END=16474839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16474840	.	C	.	.	LowGQX	.	GT	./.
chr1	16474841	.	C	.	.	LowGQX	END=16474847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16474848	.	C	G	7.08	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=3.54;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,1:2:3.01:36,3,0:60:3:0.500
chr1	16474849	.	C	.	.	LowGQX	END=16474854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	16474855	.	C	.	.	LowGQX	END=16474857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	16474858	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	16474859	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	16474860	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	16474861	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr1	16474862	.	C	.	.	LowGQX	END=16474870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	16474871	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	16474872	.	C	.	.	LowGQX	END=16474878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	16474879	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:60
chr1	16474880	.	G	.	.	LowGQX	END=16474882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	16474883	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	16474884	.	T	.	.	LowGQX	END=16474885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	16474886	.	C	.	.	LowGQX	END=16474904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	16474905	.	G	.	.	PASS	END=16474911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	16474912	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:2:60
chr1	16474913	.	C	.	.	PASS	END=16474926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	16474927	.	T	.	.	PASS	END=16474931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	16474932	.	A	.	.	PASS	END=16474933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:33:60
chr1	16474934	.	C	.	.	PASS	END=16474935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr1	16474936	.	G	.	.	PASS	END=16474942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	16474943	.	G	.	.	PASS	END=16474945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	16474946	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:21:60
chr1	16474947	.	T	.	.	PASS	END=16474956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	16474957	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:50:60
chr1	16474958	.	G	.	.	PASS	END=16474969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	16474970	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:69:60
chr1	16474971	.	T	.	.	PASS	END=16474978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	16474979	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr1	16474980	.	C	.	.	PASS	END=16475110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	16475111	.	A	.	.	PASS	END=16475122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	16475123	.	C	T	561.35	PASS	BaseQRankSum=1.169;DP=48;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=0.052;QD=11.69;ReadPosRankSum=0.962;SB=-190.22	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,22:48:99:591,0,703:60:99:0.458
chr1	16475124	.	A	.	.	PASS	END=16475125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	16475126	.	C	T	593.77	PASS	BaseQRankSum=1.611;DP=51;Dels=0.00;FS=1.413;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=0.424;QD=11.64;ReadPosRankSum=0.104;SB=-198.04	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,25:51:99:624,0,663:60:99:0.490
chr1	16475127	.	G	.	.	PASS	END=16475182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	16475183	.	C	.	.	PASS	END=16475211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	16475212	.	T	.	.	PASS	END=16475319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	16475320	.	A	.	.	PASS	END=16475420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	16475421	.	T	.	.	PASS	END=16475439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	16475440	.	C	.	.	PASS	END=16475470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr1	16475471	.	G	.	.	PASS	END=16475495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	16475496	.	T	.	.	PASS	END=16475504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr1	16475505	.	A	.	.	PASS	END=16475523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	16475524	.	T	.	.	PASS	END=16475537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	16475538	.	T	.	.	PASS	END=16475562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	16475563	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	16475564	.	T	.	.	PASS	END=16475568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	16475569	.	T	.	.	LowGQX	END=16475576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	16475577	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	16475578	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	16475579	.	C	.	.	LowGQX	END=16475580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	16475581	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	16475582	.	G	.	.	LowGQX	END=16475590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	16475591	.	G	.	.	LowGQX	END=16475593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	16477340	.	G	.	.	PASS	END=16477346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:60
chr1	16477347	.	C	.	.	PASS	END=16477349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	16477350	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:45:60
chr1	16477351	.	C	.	.	PASS	END=16477397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	16477398	.	C	.	.	PASS	END=16477474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	16477475	.	A	.	.	PASS	END=16477494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	16477495	.	T	.	.	PASS	END=16477509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	16482232	.	C	.	.	PASS	END=16482237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	16482238	.	T	.	.	PASS	END=16482242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	16482243	.	G	.	.	PASS	END=16482252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	16482253	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr1	16482254	.	G	.	.	PASS	END=16482255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	16482256	.	T	.	.	PASS	END=16482257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:69:60
chr1	16482258	.	C	.	.	PASS	END=16482272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:78:60
chr1	16482273	.	T	.	93.20	PASS	DP=50;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:40:50:63.20:60:63
chr1	16482274	.	C	.	.	PASS	END=16482278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr1	16482279	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:69:60
chr1	16482280	.	G	.	.	PASS	END=16482298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:84:60
chr1	16482299	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:50:60
chr1	16482300	.	C	.	.	PASS	END=16482314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	16482315	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:58:60
chr1	16482316	.	A	.	.	PASS	END=16482382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	16482383	.	G	.	.	PASS	END=16482444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	16482445	.	C	.	.	PASS	END=16482478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	16525080	.	C	.	.	LowGQX	END=16525115	GT	./.
chr1	16525116	.	C	.	.	LowGQX	END=16525241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16525643	.	A	.	.	LowGQX	END=16525751	GT	./.
chr1	16528267	.	G	.	.	LowGQX	END=16528366	GT	./.
chr1	16528909	.	A	.	.	LowGQX	END=16528937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16528938	.	T	.	.	LowGQX	.	GT	./.
chr1	16528939	.	G	.	.	LowGQX	END=16528991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16528992	.	C	.	.	LowGQX	END=16529071	GT	./.
chr1	16531252	.	A	.	.	LowGQX	END=16531416	GT	./.
chr1	16531577	.	C	.	.	LowGQX	END=16531579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16531580	.	A	.	.	LowGQX	END=16531633	GT	./.
chr1	16531634	.	T	.	.	LowGQX	END=16531656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16531657	.	G	.	.	LowGQX	.	GT	./.
chr1	16531658	.	C	.	.	LowGQX	END=16531676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16531774	.	C	.	.	LowGQX	END=16531784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16531785	.	A	.	.	LowGQX	END=16531886	GT	./.
chr1	16531887	.	C	.	.	LowGQX	END=16531933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16531991	.	T	.	.	LowGQX	END=16532007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16532008	.	A	.	.	LowGQX	.	GT	./.
chr1	16532009	.	C	.	.	LowGQX	END=16532049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16532050	.	G	.	.	LowGQX	.	GT	./.
chr1	16532051	.	G	.	.	LowGQX	END=16532133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16532134	.	G	.	.	LowGQX	.	GT	./.
chr1	16532135	.	G	.	.	LowGQX	END=16532137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16532138	.	G	.	.	LowGQX	END=16532139	GT	./.
chr1	16532140	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16532141	.	A	.	.	LowGQX	END=16532143	GT	./.
chr1	16532144	.	G	.	.	LowGQX	END=16532149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16532150	.	G	.	.	LowGQX	.	GT	./.
chr1	16532151	.	G	.	.	LowGQX	END=16532153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16532154	.	T	.	.	LowGQX	.	GT	./.
chr1	16532155	.	T	.	.	LowGQX	END=16532161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16532162	.	G	.	.	LowGQX	.	GT	./.
chr1	16532163	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16532164	.	T	.	.	LowGQX	.	GT	./.
chr1	16532424	.	A	.	.	LowGQX	END=16532580	GT	./.
chr1	16532673	.	A	.	.	LowGQX	END=16532831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16532832	.	T	.	.	LowGQX	END=16533038	GT	./.
chr1	16533430	.	C	.	.	LowGQX	END=16533709	GT	./.
chr1	16534006	.	C	.	.	LowGQX	END=16534105	GT	./.
chr1	16534168	.	A	.	.	LowGQX	END=16534274	GT	./.
chr1	16534437	.	A	.	.	LowGQX	END=16534722	GT	./.
chr1	16535126	.	A	.	.	LowGQX	END=16535227	GT	./.
chr1	16535228	.	C	.	.	LowGQX	END=16535279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16535280	.	G	.	.	LowGQX	END=16535413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	16535414	.	C	.	.	LowGQX	END=16535429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16535430	.	C	.	.	LowGQX	.	GT	./.
chr1	16535431	.	A	.	.	LowGQX	END=16535442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16535443	.	T	.	.	LowGQX	.	GT	./.
chr1	16535444	.	C	.	.	LowGQX	END=16535486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16535487	.	G	C	7.08	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=3.54;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:36,3,0:60:3:1.000
chr1	16535488	.	T	.	.	LowGQX	.	GT	./.
chr1	16535489	.	G	.	.	LowGQX	END=16535494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16535495	.	T	.	.	LowGQX	.	GT	./.
chr1	16535496	.	G	.	.	LowGQX	END=16535514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16535515	.	T	.	.	LowGQX	.	GT	./.
chr1	16535516	.	G	.	.	LowGQX	END=16535555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16542377	.	C	.	.	LowGQX	END=16542556	GT	./.
chr1	16542963	.	C	.	.	LowGQX	END=16542966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	16542967	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	16542968	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	16542969	.	T	.	.	LowGQX	END=16542981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	16542982	.	G	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.9461;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr1	16542983	.	T	.	.	LowGQX	END=16542988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	16542989	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	16542990	.	G	.	.	LowGQX	END=16542991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	16542992	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	16542993	.	G	.	.	LowGQX	END=16543020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16543021	.	C	.	.	LowGQX	.	GT	./.
chr1	16543022	.	G	.	.	LowGQX	END=16543066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16543067	.	A	.	.	LowGQX	.	GT	./.
chr1	16543068	.	G	.	.	LowGQX	END=16543072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16543073	.	T	.	.	LowGQX	END=16543074	GT	./.
chr1	16543075	.	G	.	.	LowGQX	END=16543104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16543589	.	C	.	.	LowGQX	END=16543626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16543627	.	A	.	.	LowGQX	.	GT	./.
chr1	16543628	.	G	.	.	LowGQX	END=16543639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16543640	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16543641	.	C	.	.	LowGQX	END=16543660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16543661	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16543662	.	A	.	.	LowGQX	END=16543663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16543664	.	C	.	.	LowGQX	.	GT	./.
chr1	16543665	.	A	.	.	LowGQX	END=16543673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16543674	.	T	.	.	LowGQX	.	GT	./.
chr1	16543675	.	A	.	.	LowGQX	END=16543681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16543682	.	G	.	.	LowGQX	.	GT	./.
chr1	16543683	.	G	.	.	LowGQX	END=16543688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16555367	.	A	.	.	LowGQX	END=16555558	GT	./.
chr1	16555958	.	C	.	.	LowGQX	END=16556057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16558541	.	A	.	.	LowGQX	END=16558620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16558621	.	G	.	.	LowGQX	.	GT	./.
chr1	16558622	.	C	.	.	LowGQX	END=16558636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16558637	.	G	.	.	LowGQX	.	GT	./.
chr1	16558638	.	C	.	.	LowGQX	END=16558696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16558697	.	G	.	.	LowGQX	.	GT	./.
chr1	16558698	.	G	.	.	LowGQX	END=16558726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16558727	.	T	.	.	LowGQX	.	GT	./.
chr1	16558728	.	C	.	.	LowGQX	END=16558742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16558743	.	A	.	.	LowGQX	.	GT	./.
chr1	16558744	.	G	.	.	LowGQX	END=16558753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16558754	.	T	.	.	LowGQX	END=16558794	GT	./.
chr1	16559003	.	A	.	.	LowGQX	END=16559143	GT	./.
chr1	16559386	.	A	.	.	LowGQX	END=16559450	GT	./.
chr1	16559451	.	C	.	.	LowGQX	END=16559514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16560105	.	A	.	.	LowGQX	END=16560261	GT	./.
chr1	16563124	.	A	.	.	LowGQX	END=16563175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16563176	.	C	.	.	LowGQX	.	GT	./.
chr1	16563177	.	C	.	.	LowGQX	END=16563213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16563214	.	A	.	.	LowGQX	.	GT	./.
chr1	16563215	.	C	.	.	LowGQX	END=16563216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16563217	.	G	.	.	LowGQX	.	GT	./.
chr1	16563218	.	G	.	.	LowGQX	END=16563219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16563220	.	C	.	.	LowGQX	.	GT	./.
chr1	16563221	.	A	.	.	LowGQX	END=16563223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16563224	.	G	.	.	LowGQX	.	GT	./.
chr1	16563225	.	G	.	.	LowGQX	END=16563239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16577163	.	C	.	.	LowGQX	END=16578226	GT	./.
chr1	16578227	.	G	.	.	LowGQX	END=16578260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16578261	.	A	.	.	LowGQX	.	GT	./.
chr1	16578262	.	C	.	.	LowGQX	END=16578266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16578267	.	A	.	.	LowGQX	.	GT	./.
chr1	16578268	.	C	.	.	LowGQX	END=16578282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16578781	.	A	.	.	LowGQX	END=16578901	GT	./.
chr1	16579578	.	A	.	.	LowGQX	END=16579677	GT	./.
chr1	16580128	.	A	.	.	LowGQX	END=16580228	GT	./.
chr1	16582204	.	A	.	.	LowGQX	END=16582276	GT	./.
chr1	16582277	.	C	.	.	LowGQX	END=16582318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16583099	.	A	.	.	LowGQX	END=16583256	GT	./.
chr1	16621267	.	T	.	.	LowGQX	END=16621296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16621297	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	16621298	.	C	.	.	LowGQX	END=16621299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16621300	.	C	.	.	LowGQX	.	GT	./.
chr1	16621301	.	T	.	.	LowGQX	END=16621314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16621315	.	G	.	.	LowGQX	.	GT	./.
chr1	16621316	.	T	.	.	LowGQX	END=16621338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16621339	.	A	.	.	LowGQX	.	GT	./.
chr1	16621340	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16621341	.	C	.	.	LowGQX	END=16621342	GT	./.
chr1	16621343	.	G	.	.	LowGQX	END=16621351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16621352	.	C	.	.	LowGQX	.	GT	./.
chr1	16621353	.	T	.	.	LowGQX	END=16621360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16621361	.	G	.	.	LowGQX	.	GT	./.
chr1	16621362	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16621363	.	A	.	.	LowGQX	.	GT	./.
chr1	16621364	.	C	.	.	LowGQX	END=16621366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16621367	.	C	.	.	LowGQX	.	GT	./.
chr1	16621368	.	C	.	.	LowGQX	END=16621387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16621388	.	T	.	.	LowGQX	END=16621414	GT	./.
chr1	16632296	.	A	.	.	LowGQX	END=16632416	GT	./.
chr1	16641662	.	A	.	.	LowGQX	END=16641915	GT	./.
chr1	16693669	.	T	.	.	LowGQX	END=16693770	GT	./.
chr1	16693771	.	G	.	.	LowGQX	END=16693797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16693798	.	A	.	.	LowGQX	.	GT	./.
chr1	16693799	.	G	.	.	LowGQX	END=16693805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16693806	.	A	.	.	LowGQX	.	GT	./.
chr1	16693807	.	A	.	.	LowGQX	END=16693822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16693823	.	C	.	.	LowGQX	.	GT	./.
chr1	16693824	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16693825	.	A	.	.	LowGQX	.	GT	./.
chr1	16693826	.	T	.	.	LowGQX	END=16693828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16713745	.	C	.	.	LowGQX	END=16713844	GT	./.
chr1	16713997	.	A	.	.	LowGQX	END=16714092	GT	./.
chr1	16714093	.	T	.	.	LowGQX	END=16714191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16714192	.	G	.	.	LowGQX	END=16714204	GT	./.
chr1	16717845	.	T	.	.	LowGQX	END=16717846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16717847	.	T	.	.	LowGQX	.	GT	./.
chr1	16717848	.	T	.	.	LowGQX	END=16717863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16717864	.	C	.	.	LowGQX	.	GT	./.
chr1	16717865	.	T	.	.	LowGQX	END=16717868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	16717869	.	G	.	.	LowGQX	.	GT	./.
chr1	16717870	.	G	.	.	LowGQX	END=16717897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16717898	.	T	.	.	LowGQX	.	GT	./.
chr1	16717899	.	G	.	.	LowGQX	END=16717900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16717901	.	A	.	.	LowGQX	.	GT	./.
chr1	16717902	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16717903	.	A	.	.	LowGQX	.	GT	./.
chr1	16717904	.	T	.	.	LowGQX	END=16717906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16717907	.	C	.	.	LowGQX	.	GT	./.
chr1	16717908	.	A	.	.	LowGQX	END=16717914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16717915	.	G	.	.	LowGQX	END=16717916	GT	./.
chr1	16717917	.	G	.	.	LowGQX	END=16717921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16717922	.	A	.	.	LowGQX	.	GT	./.
chr1	16717923	.	A	.	.	LowGQX	END=16717928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16717929	.	C	.	.	LowGQX	END=16717930	GT	./.
chr1	16717931	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16717932	.	T	.	.	LowGQX	.	GT	./.
chr1	16717933	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16717934	.	T	.	.	LowGQX	.	GT	./.
chr1	16717935	.	G	.	.	LowGQX	END=16717944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719721	.	A	.	.	LowGQX	END=16719754	GT	./.
chr1	16719755	.	T	.	.	LowGQX	END=16719773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719774	.	C	.	.	LowGQX	.	GT	./.
chr1	16719775	.	C	.	.	LowGQX	END=16719800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719801	.	C	.	.	LowGQX	.	GT	./.
chr1	16719802	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719803	.	G	.	.	LowGQX	.	GT	./.
chr1	16719804	.	C	.	.	LowGQX	END=16719812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719813	.	G	.	.	LowGQX	.	GT	./.
chr1	16719814	.	A	.	.	LowGQX	END=16719816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719817	.	C	.	.	LowGQX	.	GT	./.
chr1	16719818	.	C	.	.	LowGQX	END=16719819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719820	.	A	.	.	LowGQX	.	GT	./.
chr1	16719821	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719822	.	C	.	.	LowGQX	.	GT	./.
chr1	16719823	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719824	.	G	.	.	LowGQX	.	GT	./.
chr1	16719825	.	C	.	.	LowGQX	END=16719826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719827	.	A	.	.	LowGQX	END=16719828	GT	./.
chr1	16719829	.	G	.	.	LowGQX	END=16719831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719832	.	G	.	.	LowGQX	.	GT	./.
chr1	16719833	.	T	.	.	LowGQX	END=16719838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719839	.	G	.	.	LowGQX	.	GT	./.
chr1	16719840	.	C	.	.	LowGQX	END=16719851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719852	.	C	.	.	LowGQX	.	GT	./.
chr1	16719853	.	A	.	.	LowGQX	END=16719862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719863	.	C	.	.	LowGQX	.	GT	./.
chr1	16719864	.	C	.	.	LowGQX	END=16719866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719867	.	C	.	.	LowGQX	.	GT	./.
chr1	16719868	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719869	.	T	.	.	LowGQX	END=16719870	GT	./.
chr1	16719871	.	C	.	.	LowGQX	END=16719872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719873	.	A	.	.	LowGQX	.	GT	./.
chr1	16719874	.	G	.	.	LowGQX	END=16719878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719879	.	G	.	.	LowGQX	END=16719880	GT	./.
chr1	16719881	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719882	.	C	.	.	LowGQX	.	GT	./.
chr1	16719883	.	C	.	.	LowGQX	END=16719890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719891	.	G	.	.	LowGQX	.	GT	./.
chr1	16719892	.	C	.	.	LowGQX	END=16719895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719896	.	A	.	.	LowGQX	.	GT	./.
chr1	16719897	.	G	.	.	LowGQX	END=16719899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719900	.	C	.	.	LowGQX	END=16719901	GT	./.
chr1	16719902	.	A	.	.	LowGQX	END=16719904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719905	.	A	.	.	LowGQX	END=16719928	GT	./.
chr1	16719929	.	T	.	.	LowGQX	END=16719939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719940	.	A	.	.	LowGQX	.	GT	./.
chr1	16719941	.	G	.	.	LowGQX	END=16719942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719943	.	C	.	.	LowGQX	END=16719944	GT	./.
chr1	16719945	.	C	.	.	LowGQX	END=16719948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719949	.	G	.	.	LowGQX	.	GT	./.
chr1	16719950	.	A	.	.	LowGQX	END=16719951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719952	.	G	.	.	LowGQX	END=16719954	GT	./.
chr1	16719955	.	C	.	.	LowGQX	END=16719960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719961	.	A	.	.	LowGQX	.	GT	./.
chr1	16719962	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719963	.	A	.	.	LowGQX	.	GT	./.
chr1	16719964	.	C	.	.	LowGQX	END=16719968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719969	.	C	.	.	LowGQX	.	GT	./.
chr1	16719970	.	C	.	.	LowGQX	END=16719975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16719976	.	A	.	.	LowGQX	.	GT	./.
chr1	16719977	.	G	.	.	LowGQX	END=16719979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16721531	.	A	.	.	LowGQX	END=16721763	GT	./.
chr1	16725179	.	A	.	.	PASS	END=16725192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	16725193	.	G	.	.	PASS	END=16725222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:87:60
chr1	16725223	.	G	.	.	PASS	END=16725271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	16725272	.	A	.	.	PASS	END=16725336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	16725337	.	A	.	.	PASS	END=16725338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	16725837	.	A	.	.	PASS	END=16725904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	16725905	.	C	.	.	PASS	END=16725985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	16725986	.	A	.	.	PASS	END=16726018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	16727213	.	A	.	.	PASS	END=16727238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	16727239	.	T	.	.	PASS	END=16727260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	16727261	.	T	.	.	PASS	END=16727312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	16727313	.	A	.	.	PASS	END=16727362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:247:99:60
chr1	16727363	.	T	.	.	PASS	END=16727389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr1	16730170	.	A	.	.	PASS	END=16730176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:51:60
chr1	16730177	.	C	.	.	PASS	END=16730182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	16730183	.	G	.	.	PASS	END=16730204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	16730205	.	C	.	.	PASS	END=16730232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:96:60
chr1	16730233	.	C	.	.	PASS	END=16730261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	16730262	.	T	.	.	PASS	END=16730341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	16730449	.	T	.	.	PASS	END=16730501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	16730502	.	C	.	.	PASS	END=16730535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	16730536	.	T	.	.	PASS	END=16730548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	16731460	.	A	.	.	PASS	END=16731477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	16731478	.	C	.	.	PASS	END=16731509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	16731510	.	C	G	1343.10	PASS	BaseQRankSum=1.565;DP=122;Dels=0.00;FS=2.414;HRun=0;HaplotypeScore=5.6815;MQ=60;MQ0=0;MQRankSum=-0.008;QD=11.01;ReadPosRankSum=-0.607;SB=-744.64	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:62,60:122:99:1373,0,1394:60:99:0.492
chr1	16731511	.	A	.	.	PASS	END=16731564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	16731565	.	A	.	.	PASS	END=16731607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	16731608	.	A	.	.	PASS	END=16731624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	16731625	.	A	.	.	PASS	END=16731634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	16731635	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr1	16731636	.	T	.	.	PASS	END=16731639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	16735606	.	C	.	.	PASS	END=16735659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	16735660	.	T	.	.	PASS	END=16735705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	16736094	.	A	.	.	PASS	END=16736192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	16736193	.	A	.	.	PASS	END=16736233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	16736234	.	T	.	.	PASS	END=16736259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	16736260	.	C	.	.	PASS	END=16736354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	16736355	.	C	.	.	PASS	END=16736361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	16736362	.	G	.	.	PASS	END=16736405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	16736406	.	C	.	.	PASS	END=16736492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	16736493	.	G	.	.	PASS	END=16736536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	16736537	.	T	.	.	PASS	END=16736540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	16737201	.	C	.	.	LowGQX	.	GT	./.
chr1	16737202	.	G	.	.	LowGQX	END=16737359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16747979	.	C	.	.	PASS	END=16747981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	16747982	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr1	16747983	.	T	.	.	PASS	END=16748023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	16748024	.	G	.	.	PASS	END=16748048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:80:60
chr1	16748049	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:66:60
chr1	16748050	.	C	.	.	PASS	END=16748063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	16748064	.	A	.	.	PASS	END=16748066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:75:60
chr1	16748067	.	A	.	.	PASS	END=16748073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr1	16748074	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:53:60
chr1	16748075	.	G	.	.	PASS	END=16748078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	16748387	.	G	.	.	PASS	END=16748486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	16751591	.	T	.	.	LowGQX	END=16751749	GT	./.
chr1	16752018	.	C	.	.	LowGQX	END=16752226	GT	./.
chr1	16754358	.	C	.	.	LowGQX	END=16754510	GT	./.
chr1	16757737	.	C	.	.	PASS	END=16757760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	16757761	.	G	.	.	PASS	END=16757775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	16757776	.	T	.	.	PASS	END=16757826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	16757827	.	T	.	.	PASS	END=16757852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	16757853	.	T	.	.	PASS	END=16757868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	16767253	.	C	.	.	LowGQX	END=16767352	GT	./.
chr1	16770125	.	A	.	.	LowGQX	END=16770165	GT	./.
chr1	16770166	.	C	.	.	LowGQX	END=16770176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16770177	.	T	.	.	LowGQX	.	GT	./.
chr1	16770178	.	C	.	.	LowGQX	END=16770194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16770195	.	T	.	.	LowGQX	.	GT	./.
chr1	16770196	.	G	.	.	LowGQX	END=16770221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16770222	.	C	.	.	LowGQX	.	GT	./.
chr1	16770223	.	G	.	.	LowGQX	END=16770229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16774363	.	A	.	.	LowGQX	END=16774471	GT	./.
chr1	16774546	.	G	.	.	LowGQX	END=16774645	GT	./.
chr1	16775586	.	A	.	.	LowGQX	END=16775698	GT	./.
chr1	16776617	.	A	.	.	LowGQX	END=16776716	GT	./.
chr1	16778320	.	C	.	.	LowGQX	END=16778321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16778322	.	T	.	.	LowGQX	.	GT	./.
chr1	16778323	.	C	.	.	LowGQX	END=16778325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16778326	.	T	.	.	LowGQX	.	GT	./.
chr1	16778327	.	C	.	.	LowGQX	END=16778329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16778330	.	T	.	.	LowGQX	END=16778331	GT	./.
chr1	16778332	.	G	.	.	LowGQX	END=16778335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16778336	.	A	.	.	LowGQX	.	GT	./.
chr1	16778337	.	T	.	.	LowGQX	END=16778338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16778339	.	A	.	.	LowGQX	.	GT	./.
chr1	16778340	.	A	.	.	LowGQX	END=16778343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16778344	.	G	.	.	LowGQX	.	GT	./.
chr1	16778345	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16778346	.	A	.	.	LowGQX	.	GT	./.
chr1	16778347	.	G	.	.	LowGQX	END=16778349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16778350	.	A	.	.	LowGQX	.	GT	./.
chr1	16778351	.	G	.	.	LowGQX	END=16778358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16778359	.	T	.	.	LowGQX	.	GT	./.
chr1	16778360	.	G	.	.	LowGQX	END=16778363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16778364	.	A	.	.	LowGQX	.	GT	./.
chr1	16778365	.	T	.	.	LowGQX	END=16778372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16778373	.	T	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	16778374	.	C	.	.	LowGQX	END=16778379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16778380	.	T	.	.	LowGQX	.	GT	./.
chr1	16778381	.	G	.	.	LowGQX	END=16778391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16778392	.	A	.	.	LowGQX	.	GT	./.
chr1	16778393	.	G	.	.	LowGQX	END=16778396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16778397	.	T	.	.	LowGQX	.	GT	./.
chr1	16778398	.	G	.	.	LowGQX	END=16778438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16778439	.	T	.	.	LowGQX	END=16778512	GT	./.
chr1	16782289	.	G	.	.	LowGQX	END=16782390	GT	./.
chr1	16785265	.	A	.	.	LowGQX	END=16785491	GT	./.
chr1	16862279	.	G	.	.	LowGQX	END=16862619	GT	./.
chr1	16863273	.	C	.	.	LowGQX	END=16863372	GT	./.
chr1	16890437	.	C	.	.	PASS	END=16890440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:59
chr1	16890441	.	C	T	210.26	LowQD	BaseQRankSum=3.933;DP=142;Dels=0.00;FS=0.980;HRun=1;HaplotypeScore=13.3096;MQ=59;MQ0=0;MQRankSum=-2.855;QD=1.48;ReadPosRankSum=-0.339;SB=-85.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:118,19:142:99:240,0,3078:59:99:0.139
chr1	16890442	.	T	.	.	PASS	END=16890483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:59
chr1	16890484	.	G	C	111.50	LowQD	BaseQRankSum=3.468;DP=147;Dels=0.00;FS=1.076;HRun=0;HaplotypeScore=5.6815;MQ=60;MQ0=0;MQRankSum=-0.036;QD=0.76;ReadPosRankSum=1.184;SB=-31.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:133,14:147:99:141,0,3320:60:99:0.095
chr1	16890485	.	T	.	.	PASS	END=16890548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:57
chr1	16890549	.	T	.	.	PASS	END=16890576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:56
chr1	16890577	.	A	.	.	PASS	END=16890597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:54
chr1	16890598	.	T	A	1528.03	PASS	BaseQRankSum=2.180;DP=63;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=20.6073;MQ=54;MQ0=0;MQRankSum=-0.682;QD=24.25;ReadPosRankSum=0.547;SB=-193.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:14,48:63:99:1558,0,268:54:99:0.774
chr1	16890599	.	A	.	.	PASS	END=16890601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:54
chr1	16890602	.	T	G	293.27	PASS	BaseQRankSum=-0.260;DP=61;Dels=0.00;FS=1.767;HRun=0;HaplotypeScore=17.7143;MQ=54;MQ0=0;MQRankSum=2.286;QD=4.81;ReadPosRankSum=-1.901;SB=-15.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:46,15:61:99:323,0,1467:54:99:0.246
chr1	16890603	.	T	.	.	PASS	END=16890638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:52
chr1	16890639	.	C	T	556.38	PASS	BaseQRankSum=0.951;DP=52;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=10.7287;MQ=52;MQ0=0;MQRankSum=-5.091;QD=10.70;ReadPosRankSum=-0.466;SB=-86.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:31,21:52:99:586,0,900:52:99:0.404
chr1	16890640	.	A	.	.	PASS	END=16890643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:52
chr1	16890644	.	C	T	695.58	PASS	BaseQRankSum=1.425;DP=51;Dels=0.00;FS=1.448;HRun=2;HaplotypeScore=9.7818;MQ=52;MQ0=0;MQRankSum=3.633;QD=13.64;ReadPosRankSum=-0.123;SB=-166.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:27,24:51:99:726,0,781:52:99:0.471
chr1	16890645	.	T	.	.	PASS	END=16890670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:52
chr1	16890671	.	T	C	1185.28	PASS	BaseQRankSum=1.059;DP=44;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=52;MQ0=0;MQRankSum=-2.567;QD=26.94;ReadPosRankSum=-0.674;SB=-244.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:7,37:44:99:1215,0,110:52:99:0.841
chr1	16890672	.	G	A	1031.09	PASS	BaseQRankSum=1.193;DP=40;Dels=0.00;FS=2.491;HRun=0;HaplotypeScore=0.0000;MQ=52;MQ0=0;MQRankSum=-1.913;QD=25.78;ReadPosRankSum=-1.307;SB=-220.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:6,34:40:99:1061,0,109:52:99:0.850
chr1	16890673	.	C	.	.	PASS	END=16890681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:52
chr1	16891301	.	C	.	.	PASS	END=16891326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:53
chr1	16891327	.	C	.	.	PASS	END=16891364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:54
chr1	16891365	.	G	A	97.01	LowQD	BaseQRankSum=2.014;DP=261;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=105.2340;MQ=56;MQ0=3;MQRankSum=1.845;QD=0.37;ReadPosRankSum=0.129;SB=-30.91	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:215,25:261:99:127,0,3886:56:97:0.104
chr1	16891366	.	T	.	.	PASS	END=16891413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:53
chr1	16892127	.	C	.	.	PASS	END=16892149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:39
chr1	16892150	.	A	.	.	PASS	END=16892215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:44
chr1	16892216	.	A	.	.	PASS	END=16892253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:50
chr1	16892254	.	C	.	.	PASS	END=16892255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:53
chr1	16892256	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:43:15:53
chr1	16892257	.	G	.	.	PASS	END=16892276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:53
chr1	16892277	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:66:55
chr1	16892278	.	C	.	.	PASS	END=16892280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:55
chr1	16892281	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:48:56
chr1	16892282	.	C	A	84.75	PASS	BaseQRankSum=2.217;DP=33;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.9980;MQ=56;MQ0=0;MQRankSum=-0.070;QD=2.57;ReadPosRankSum=2.310;SB=-27.29	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:27,6:33:99:115,0,854:56:85:0.182
chr1	16892283	.	A	.	.	PASS	END=16892295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:55
chr1	16892296	.	T	.	.	PASS	END=16892297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:55
chr1	16892298	.	A	.	.	PASS	END=16892300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:55
chr1	16892301	.	C	.	.	LowGQX	END=16892307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:52
chr1	16892308	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:45
chr1	16892381	.	T	.	.	LowGQX	END=16892401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16892402	.	A	.	.	LowGQX	.	GT	./.
chr1	16892403	.	A	.	.	LowGQX	END=16892453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	16892454	.	G	.	.	LowGQX	END=16892455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	16892456	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	16892457	.	C	.	.	LowGQX	END=16892462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	16892463	.	C	.	36	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:4:6.01:60:6
chr1	16892464	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	16892465	.	G	.	.	LowGQX	END=16892480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	16892517	.	A	.	.	LowGQX	END=16892519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:51
chr1	16892520	.	G	.	.	LowGQX	END=16892521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:6:51
chr1	16892522	.	A	.	.	LowGQX	END=16892548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:50
chr1	16892549	.	G	.	.	LowGQX	END=16892550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:50
chr1	16892551	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:50
chr1	16892552	.	A	.	.	LowGQX	END=16892554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:9:50
chr1	16892555	.	C	.	.	LowGQX	END=16892556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:50
chr1	16892557	.	C	.	.	LowGQX	END=16892560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:49
chr1	16892561	.	C	T	257.45	LowGQ;LowGQX	DP=11;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8935;MQ=49;MQ0=0;QD=23.40;SB=-75.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,11:11:24.06:290,24,0:49:24:1.000
chr1	16892562	.	G	.	.	LowGQX	END=16892566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:48
chr1	16892567	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:48
chr1	16892568	.	G	.	.	LowGQX	END=16892578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:47
chr1	16892579	.	C	.	45.04	LowGQX	DP=9;MQ=47;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:7:15.05:47:15
chr1	16892580	.	T	.	45.04	LowGQX	DP=9;MQ=47;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:7:15.05:47:15
chr1	16892581	.	C	.	.	LowGQX	END=16892582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:47
chr1	16892583	.	G	.	.	LowGQX	END=16892602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:47
chr1	16892603	.	C	.	.	PASS	END=16892607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:49
chr1	16892608	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:50
chr1	16892609	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:50
chr1	16892610	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:50
chr1	16892611	.	A	.	.	PASS	END=16892613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:50
chr1	16892614	.	G	.	.	LowGQX	END=16892616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:49
chr1	16892657	.	C	.	.	LowGQX	END=16892658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:52
chr1	16892659	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:52
chr1	16892660	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:52
chr1	16892661	.	A	.	.	PASS	END=16892662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:52
chr1	16892663	.	A	.	.	LowGQX	END=16892664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:52
chr1	16892665	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:52
chr1	16892666	.	C	.	.	LowGQX	END=16892669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:52
chr1	16892670	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:54
chr1	16892671	.	C	.	.	LowGQX	END=16892672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:54
chr1	16892673	.	G	.	.	PASS	END=16892674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:54
chr1	16892675	.	T	.	.	LowGQX	END=16892676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:54
chr1	16892677	.	C	.	.	PASS	END=16892683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:53
chr1	16892684	.	G	.	.	PASS	END=16892694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:54
chr1	16892695	.	A	.	.	PASS	END=16892705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:54
chr1	16892706	.	A	.	.	PASS	END=16892727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:56
chr1	16892728	.	G	.	.	PASS	END=16892752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:57
chr1	16892753	.	C	.	.	PASS	END=16892756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:56
chr1	16892848	.	C	.	.	PASS	END=16892874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:81:37
chr1	16892875	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:65:37
chr1	16892876	.	T	.	.	PASS	END=16892940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:78:32
chr1	16892941	.	G	.	.	PASS	END=16892954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:33
chr1	16893673	.	C	.	.	PASS	END=16893700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:57
chr1	16893701	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:88:13:57
chr1	16893702	.	C	.	.	PASS	END=16893720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:55
chr1	16893721	.	A	C	52.16	LowQD;SB	BaseQRankSum=1.049;DP=96;Dels=0.00;FS=4.855;HRun=0;HaplotypeScore=6.6709;MQ=55;MQ0=0;MQRankSum=0.726;QD=0.54;ReadPosRankSum=0.654;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:86,10:96:82.15:82,0,2213:55:52:0.104
chr1	16893722	.	A	.	.	PASS	END=16893815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:51
chr1	16893816	.	C	.	.	PASS	END=16893840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:49
chr1	16893841	.	C	T	142.63	PASS	BaseQRankSum=2.579;DP=62;Dels=0.00;FS=3.236;HRun=1;HaplotypeScore=0.0000;MQ=49;MQ0=2;MQRankSum=1.165;QD=2.30;ReadPosRankSum=-0.019;SB=-95.51	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:51,11:62:99:173,0,1381:49:99:0.177
chr1	16893842	.	T	.	.	PASS	END=16893846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:49
chr1	16894450	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:34
chr1	16894451	.	T	.	.	PASS	END=16894452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:34
chr1	16894453	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:21:34
chr1	16894454	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:34
chr1	16894455	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:34
chr1	16894456	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:34
chr1	16894457	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:34
chr1	16894458	.	A	.	.	PASS	END=16894467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:33
chr1	16894468	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:33
chr1	16894469	.	C	.	.	PASS	END=16894472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:33
chr1	16894473	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:33
chr1	16894474	.	C	.	.	PASS	END=16894497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:33
chr1	16894498	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:24:37
chr1	16894499	.	C	.	.	PASS	END=16894528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:36
chr1	16894529	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:36
chr1	16894530	.	A	.	.	PASS	END=16894546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:36
chr1	16894547	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:38
chr1	16894548	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:38
chr1	16894549	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:38
chr1	16895567	.	C	.	.	PASS	END=16895585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:36
chr1	16895586	.	T	C	134.29	PASS	BaseQRankSum=-2.027;DP=50;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7346;MQ=36;MQ0=1;MQRankSum=-2.978;QD=2.69;ReadPosRankSum=-0.102;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:37,13:50:99:164,0,873:36:99:0.260
chr1	16895587	.	G	.	.	PASS	END=16895633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:33
chr1	16895634	.	T	G	828.19	PASS	BaseQRankSum=-2.030;DP=60;Dels=0.00;FS=4.628;HRun=1;HaplotypeScore=3.7877;MQ=34;MQ0=3;MQRankSum=-4.922;QD=13.80;ReadPosRankSum=1.307;SB=-452.78	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:14,46:60:99:858,0,283:34:99:0.767
chr1	16895635	.	G	.	.	PASS	END=16895671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:87:31
chr1	16895672	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:69:31
chr1	16895673	.	A	.	.	PASS	END=16895711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:96:29
chr1	16895712	.	C	.	.	PASS	END=16895731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:28
chr1	16899553	.	T	.	.	LowMQ	END=16899557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:36:13
chr1	16899558	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:49:33:13
chr1	16899559	.	T	.	.	LowMQ	END=16899565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:36:13
chr1	16899566	.	C	.	.	LowMQ	END=16899571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:33:13
chr1	16899572	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:48:30:12
chr1	16899573	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:48:27:12
chr1	16899574	.	C	.	.	LowMQ	END=16899575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:30:11
chr1	16899576	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:54:27:11
chr1	16899577	.	T	.	.	LowMQ	END=16899585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:30:11
chr1	16899586	.	A	.	.	LowGQX;LowMQ	END=16899587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:24:11
chr1	16899588	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:55:30:11
chr1	16899589	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:58:24:11
chr1	16899590	.	T	.	.	LowMQ	END=16899591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:30:11
chr1	16899592	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:59:27:11
chr1	16899593	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:59:30:11
chr1	16899594	.	G	.	.	LowGQX;LowMQ	END=16899595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:24:11
chr1	16899596	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:59:30:12
chr1	16899597	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:59:27:12
chr1	16899598	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:61:30:11
chr1	16899599	.	C	.	.	LowGQX;LowMQ	END=16899604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:18:11
chr1	16899605	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:62:24:12
chr1	16899606	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:65:30:13
chr1	16899607	.	A	.	.	LowGQX;LowMQ	END=16899619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:21:12
chr1	16899620	.	C	.	.	LowMQ	END=16899624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:30:12
chr1	16899625	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:77:27:12
chr1	16899626	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:77:30:12
chr1	16899627	.	A	.	.	LowGQX;LowMQ	END=16899629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:24:12
chr1	16899630	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:86:3:12
chr1	16899631	.	C	.	.	LowMQ	END=16899636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:33:12
chr1	16899637	.	C	.	.	LowMQ	END=16899643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:42:13
chr1	16899644	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:93:39:13
chr1	16899645	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:93:51:13
chr1	16899646	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:93:39:13
chr1	16899647	.	C	.	.	LowMQ	END=16899652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:57:14
chr1	16899653	.	C	.	.	LowMQ	END=16899656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:42:15
chr1	16899657	.	T	.	.	LowMQ	END=16899665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:54:14
chr1	16899666	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:90:48:14
chr1	16899667	.	T	.	.	LowMQ	END=16899668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:54:14
chr1	16899669	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:89:0:14
chr1	16899670	.	T	.	.	LowMQ	END=16899675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:48:14
chr1	16899676	.	T	.	.	LowMQ	END=16899680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:54:14
chr1	16899681	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:93:48:15
chr1	16899682	.	T	.	.	LowMQ	END=16899712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:57:15
chr1	16900981	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:27:28
chr1	16900982	.	C	.	.	PASS	END=16901001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:28
chr1	16901002	.	T	.	.	PASS	END=16901015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:36:29
chr1	16901016	.	A	.	.	PASS	END=16901020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:29
chr1	16901021	.	A	G	14.13	LowGQX;LowQD	BaseQRankSum=-1.009;DP=25;Dels=0.00;FS=6.597;HRun=2;HaplotypeScore=3.7877;MQ=29;MQ0=7;MQRankSum=-2.177;QD=0.57;ReadPosRankSum=-0.053;SB=-18.19	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:17,8:25:43.96:44,0,436:29:14:0.320
chr1	16901022	.	G	.	.	PASS	END=16901023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:36:29
chr1	16901024	.	A	.	.	PASS	END=16901025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:29
chr1	16901026	.	G	.	.	PASS	END=16901035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:36:29
chr1	16901036	.	G	.	.	PASS	END=16901046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:39:29
chr1	16901047	.	A	.	.	PASS	END=16901053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:48:32
chr1	16901054	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:39:32
chr1	16901055	.	T	.	.	PASS	END=16901091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:45:32
chr1	16901092	.	T	.	.	PASS	END=16901105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:39:34
chr1	16901106	.	G	.	.	PASS	END=16901155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:45:36
chr1	16901156	.	G	.	.	PASS	END=16901187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:42:38
chr1	16901638	.	G	.	.	PASS	END=16901649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:36:40
chr1	16901650	.	A	.	.	PASS	END=16901655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:45:38
chr1	16901656	.	G	.	.	PASS	END=16901662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:39:37
chr1	16901663	.	C	.	.	PASS	END=16901667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:45:37
chr1	16901668	.	T	C	111.03	PASS	BaseQRankSum=-0.895;DP=31;Dels=0.00;FS=4.561;HRun=1;HaplotypeScore=1.8938;MQ=37;MQ0=9;MQRankSum=-1.285;QD=3.58;ReadPosRankSum=0.195;SB=-37.88	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:24,6:31:99:141,0,379:37:99:0.200
chr1	16901669	.	C	.	.	PASS	END=16901709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:42:36
chr1	16901710	.	C	.	81.15	PASS	DP=34;MQ=36;MQ0=9	GT:AD:DP:GQ:MQ:GQX	0/0:27:34:51.16:36:51
chr1	16901711	.	A	.	.	PASS	END=16901713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:48:36
chr1	16901714	.	G	A	198.00	PASS	BaseQRankSum=0.575;DP=34;Dels=0.00;FS=7.282;HRun=0;HaplotypeScore=5.7538;MQ=36;MQ0=9;MQRankSum=-1.998;QD=5.82;ReadPosRankSum=0.027;SB=-91.84	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:19,15:34:99:228,0,370:36:99:0.441
chr1	16901715	.	T	.	.	PASS	END=16901737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:42:32
chr1	16902761	.	C	.	.	PASS	END=16902779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:42
chr1	16902780	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:45:42
chr1	16902781	.	A	.	.	PASS	END=16902822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:84:40
chr1	16902823	.	G	C	6.31	LowGQX;LowQD;SB	BaseQRankSum=0.542;DP=74;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=8.5669;MQ=40;MQ0=8;MQRankSum=-1.532;QD=0.09;ReadPosRankSum=-0.467;SB=-0.26	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:64,10:74:35.15:35,0,1278:40:6:0.135
chr1	16902824	.	A	.	.	PASS	END=16902883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:39
chr1	16902884	.	T	C	150.74	PASS	BaseQRankSum=0.709;DP=69;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=14.8885;MQ=40;MQ0=6;MQRankSum=-1.006;QD=2.18;ReadPosRankSum=0.656;SB=-104.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:57,12:69:99:181,0,1110:40:99:0.174
chr1	16902885	.	T	.	.	PASS	END=16902893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:39
chr1	16902894	.	A	G	1042.22	PASS	BaseQRankSum=-2.043;DP=65;Dels=0.00;FS=7.075;HRun=2;HaplotypeScore=12.8819;MQ=39;MQ0=6;MQRankSum=-4.717;QD=16.03;ReadPosRankSum=1.177;SB=-477.59	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:12,53:65:99:1072,0,266:39:99:0.815
chr1	16902895	.	G	.	.	PASS	END=16902966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:33
chr1	16902967	.	T	.	.	PASS	END=16902976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:33
chr1	16903811	.	C	.	.	PASS	END=16903813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:43
chr1	16903814	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:46:1:43
chr1	16903815	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:66:43
chr1	16903816	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:87:43
chr1	16903817	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:52:42
chr1	16903818	.	T	.	.	PASS	END=16903839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:69:41
chr1	16903840	.	C	.	.	PASS	END=16903847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:87:40
chr1	16903848	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:58:7:40
chr1	16903849	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:93:40
chr1	16903850	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:59:40
chr1	16903851	.	T	.	.	PASS	END=16903904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:37
chr1	16903905	.	T	.	.	PASS	END=16903911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:36
chr1	16903912	.	T	A	573.61	PASS	BaseQRankSum=1.028;DP=39;Dels=0.00;FS=12.217;HRun=0;HaplotypeScore=5.7240;MQ=37;MQ0=4;MQRankSum=-4.253;QD=14.71;ReadPosRankSum=-0.461;SB=-14.58	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,25:39:99:604,0,273:37:99:0.658
chr1	16903913	.	T	.	.	PASS	END=16903914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:37
chr1	16905687	.	C	.	.	LowGQX;LowMQ	END=16905704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:3:9
chr1	16905705	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	16905706	.	T	.	.	LowGQX;LowMQ	END=16905717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:3:9
chr1	16905718	.	A	C	7.08	LowGQ;LowGQX;LowMQ;LowQD;SB	DP=22;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=9;MQ0=21;QD=0.32;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:18,4:22:3.01:36,3,0:9:3:0.182
chr1	16905719	.	G	.	.	LowGQX;LowMQ	END=16905732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:3:8
chr1	16905733	.	C	.	.	LowGQX;LowMQ	END=16905752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:3:9
chr1	16905753	.	T	.	.	LowGQX;LowMQ	END=16905787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:3:7
chr1	16905788	.	A	G	9.80	LowGQ;LowGQX;LowMQ;LowQD;SB	DP=31;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=0.0000;MQ=7;MQ0=30;QD=0.32;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:29,2:31:3.01:39,3,0:7:3:0.065
chr1	16905789	.	T	C	9.80	LowGQ;LowGQX;LowMQ;LowQD;SB	DP=31;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=7;MQ0=30;QD=0.32;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:29,2:31:3.01:39,3,0:7:3:0.065
chr1	16905790	.	G	.	.	LowGQX;LowMQ	END=16905799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:3:7
chr1	16905800	.	G	A	9.80	LowGQ;LowGQX;LowMQ;LowQD;SB	DP=30;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=7;MQ0=29;QD=0.33;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:28,2:30:3.01:39,3,0:7:3:0.067
chr1	16905801	.	T	.	.	LowGQX;LowMQ	END=16905802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:3:7
chr1	16905803	.	G	C	9.80	LowGQ;LowGQX;LowMQ;LowQD;SB	DP=30;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=7;MQ0=29;QD=0.33;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:28,2:30:3.01:39,3,0:7:3:0.067
chr1	16905804	.	A	.	.	LowGQX;LowMQ	END=16905813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:3:7
chr1	16905814	.	T	.	.	LowGQX;LowMQ	END=16905897	GT	./.
chr1	16907239	.	C	.	.	PASS	END=16907307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:48
chr1	16907308	.	T	.	.	PASS	END=16907327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:46
chr1	16907328	.	G	T	3067.49	PASS	BaseQRankSum=3.480;DP=197;Dels=0.00;FS=0.589;HRun=0;HaplotypeScore=16.1401;MQ=46;MQ0=5;MQRankSum=-1.538;QD=15.57;ReadPosRankSum=0.563;SB=-1919.79	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:68,127:197:99:3097,0,1272:46:99:0.651
chr1	16907329	.	G	.	.	PASS	END=16907447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:40
chr1	16907448	.	C	.	.	PASS	END=16907451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:39
chr1	16907901	.	G	.	.	PASS	END=16907927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:51
chr1	16907928	.	A	.	.	PASS	END=16907967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:63:53
chr1	16907968	.	A	.	.	PASS	END=16908000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:52
chr1	16909038	.	C	.	.	LowGQX	END=16909051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:21:34
chr1	16909052	.	C	T	244.54	LowGQ;LowGQX	DP=18;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=34;MQ0=9;QD=13.59;SB=-114.57	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,17:18:21.07:277,21,0:34:21:0.944
chr1	16909053	.	T	.	.	LowGQX	END=16909071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:15:28
chr1	16909072	.	G	.	.	LowGQX	END=16909081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:15:21
chr1	16909082	.	C	.	.	LowGQX	END=16909094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:18:24
chr1	16909095	.	T	.	.	LowGQX	END=16909109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:21:23
chr1	16909110	.	C	.	.	LowGQX	END=16909119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:21:21
chr1	16909120	.	T	.	.	LowGQX;LowMQ	END=16909128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:21:19
chr1	16909129	.	T	.	19.56	LowGQX;LowMQ	DP=34;MQ=18;MQ0=27	GT:AD:DP:GQ:MQ:GQX	0/0:24:34:0.37:18:0
chr1	16909130	.	A	.	.	LowGQX;LowMQ	END=16909133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:18:18
chr1	16909134	.	G	.	.	LowGQX;LowMQ	END=16909150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:21:18
chr1	16909151	.	G	.	.	LowMQ	END=16909152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:30:19
chr1	16909153	.	G	.	.	LowGQX;LowMQ	END=16909162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:21:17
chr1	16909163	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:43:30:19
chr1	16909164	.	A	.	.	LowGQX;LowMQ	END=16909169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:27:19
chr1	16909170	.	C	.	.	LowMQ	END=16909171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:30:19
chr1	16909172	.	G	.	.	LowGQX;LowMQ	END=16909173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:27:19
chr1	16909174	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:44:30:19
chr1	16909175	.	G	.	.	LowGQX;LowMQ	END=16909176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:27:19
chr1	16909177	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:44:30:19
chr1	16909178	.	A	.	.	LowGQX;LowMQ	END=16909219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:21:17
chr1	16909220	.	T	C	60.87	LowMQ;LowQD;SB	BaseQRankSum=1.001;DP=45;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9997;MQ=17;MQ0=36;MQRankSum=0.573;QD=1.35;ReadPosRankSum=-2.054;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,7:45:90.86:91,0,198:17:61:0.156
chr1	16909221	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:43:0:18
chr1	16909222	.	G	.	.	LowGQX;LowMQ	END=16909232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:21:17
chr1	16909233	.	T	.	.	LowGQX;LowMQ	END=16909243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:18:16
chr1	16909244	.	T	.	.	LowGQX;LowMQ	END=16909245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:15:16
chr1	16909246	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:37:0:17
chr1	16909247	.	A	.	.	LowGQX;LowMQ	END=16909250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:18:17
chr1	16909251	.	T	.	.	LowGQX;LowMQ	END=16909253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:15:17
chr1	16910088	.	C	.	.	PASS	END=16910095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:63:37
chr1	16910096	.	C	.	.	PASS	END=16910123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:72:34
chr1	16910124	.	C	.	.	PASS	END=16910191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:78:29
chr1	16911983	.	C	.	.	LowGQX;LowMQ	END=16912001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:9:17
chr1	16912002	.	T	.	.	LowGQX;LowMQ	END=16912013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:12:18
chr1	16912014	.	A	.	42.02	LowGQX;LowMQ	DP=21;MQ=18;MQ0=16	GT:AD:DP:GQ:MQ:GQX	0/0:13:21:12.03:18:12
chr1	16912015	.	G	.	.	LowGQX;LowMQ	END=16912044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:12:17
chr1	16912045	.	G	.	.	LowGQX;LowMQ	END=16912056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:9:16
chr1	16912057	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:21:3:16
chr1	16912058	.	T	.	.	LowGQX;LowMQ	END=16912074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:9:15
chr1	16912075	.	C	.	.	LowGQX;LowMQ	END=16912076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:6:15
chr1	16912077	.	G	.	.	LowGQX;LowMQ	END=16912087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:9:14
chr1	16912088	.	A	.	.	LowGQX;LowMQ	END=16912114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:6:14
chr1	16912115	.	A	.	.	LowGQX;LowMQ	END=16912119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:9:15
chr1	16912120	.	T	.	.	LowGQX;LowMQ	END=16912137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:6:15
chr1	16912138	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:15:3:16
chr1	16912139	.	G	.	.	LowGQX;LowMQ	END=16912152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:6:16
chr1	16912153	.	C	.	.	LowGQX;LowMQ	END=16912170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:3:12
chr1	16912171	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	16912172	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:13:3:13
chr1	16912173	.	C	.	.	LowGQX	END=16912193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:6:20
chr1	16913544	.	C	.	.	PASS	END=16913583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:60:31
chr1	16913584	.	A	C	202.85	PASS	BaseQRankSum=-0.156;DP=38;Dels=0.00;FS=3.975;HRun=0;HaplotypeScore=0.0000;MQ=31;MQ0=3;MQRankSum=1.616;QD=5.34;ReadPosRankSum=0.851;SB=-111.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,12:38:99:233,0,445:31:99:0.316
chr1	16913585	.	G	.	.	PASS	END=16913611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:60:30
chr1	16913612	.	G	A	244.67	PASS	BaseQRankSum=1.328;DP=42;Dels=0.00;FS=5.402;HRun=1;HaplotypeScore=3.5058;MQ=31;MQ0=2;MQRankSum=1.848;QD=5.83;ReadPosRankSum=0.635;SB=-141.71	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:29,13:42:99:275,0,473:31:99:0.310
chr1	16913613	.	T	.	.	PASS	END=16913653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:60:29
chr1	16913654	.	A	.	.	PASS	END=16913657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:29
chr1	16913658	.	T	.	.	PASS	END=16913666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:29
chr1	16913667	.	T	.	.	PASS	END=16913675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:30:26
chr1	16913676	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:24:24
chr1	16913677	.	T	C	191.71	LowGQ;LowGQX;SB	DP=17;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=22;MQ0=7;QD=11.28;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,15:17:21.04:225,21,0:22:21:1.000
chr1	16913678	.	G	.	.	LowGQX	END=16913684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:21:21
chr1	16913685	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:18:21
chr1	16913686	.	T	.	.	LowGQX	END=16913703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:21:20
chr1	16913704	.	A	.	.	PASS	END=16913705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:30:21
chr1	16913706	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:27:21
chr1	16913707	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:33:21
chr1	16913708	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:27:21
chr1	16913709	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:33:21
chr1	16913710	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:24:21
chr1	16913711	.	C	.	.	PASS	END=16913717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:21
chr1	16913718	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:22
chr1	16913719	.	C	.	.	PASS	END=16913720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:22
chr1	16913721	.	T	.	.	LowGQX	END=16913724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:24:22
chr1	16913725	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:22
chr1	16913726	.	G	.	.	LowGQX	END=16913727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:24:22
chr1	16913728	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:22
chr1	16913729	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:22
chr1	16913730	.	T	.	.	PASS	END=16913733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:22
chr1	16913734	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:22
chr1	16913735	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:22
chr1	16913736	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:22
chr1	16913737	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:22
chr1	16913738	.	T	.	.	LowGQX	END=16913742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:24:22
chr1	16913743	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:30:21
chr1	16913744	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:24:22
chr1	16913745	.	T	.	.	PASS	END=16913746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:22
chr1	16913747	.	C	.	.	LowGQX	END=16913749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:24:22
chr1	16913750	.	C	.	.	PASS	END=16913756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:22
chr1	16914206	.	G	.	.	PASS	END=16914212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:48
chr1	16914213	.	G	.	.	PASS	END=16914251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:50
chr1	16914252	.	C	T	104.58	PASS	BaseQRankSum=0.827;DP=31;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.8938;MQ=51;MQ0=0;MQRankSum=1.205;QD=3.37;ReadPosRankSum=-0.874;SB=-75.82	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:24,7:31:99:135,0,551:51:99:0.226
chr1	16914253	.	T	.	.	PASS	END=16914293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:51
chr1	16914294	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:31:52
chr1	16914295	.	G	.	.	PASS	END=16914305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:52
chr1	16915308	.	G	.	.	LowGQX;LowMQ	END=16915315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:3:16
chr1	16915316	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	16915317	.	G	.	.	LowGQX;LowMQ	END=16915330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:3:14
chr1	16915331	.	A	.	.	LowGQX;LowMQ	END=16915340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:3:13
chr1	16915341	.	T	.	.	LowGQX;LowMQ	END=16915352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:6:13
chr1	16915353	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:20:3:13
chr1	16915354	.	C	.	.	LowGQX;LowMQ	END=16915356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:6:13
chr1	16915357	.	C	T	31.86	LowGQ;LowGQX;LowMQ;LowQD;SB	DP=20;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=13;MQ0=16;QD=1.59;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:4,16:20:6.01:63,6,0:13:6:0.800
chr1	16915358	.	T	.	.	LowGQX;LowMQ	END=16915362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:3:13
chr1	16915363	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:20:9:13
chr1	16915364	.	A	.	.	LowGQX;LowMQ	END=16915367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:3:13
chr1	16915368	.	G	.	.	LowGQX;LowMQ	END=16915370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:0:12
chr1	16915371	.	G	.	.	LowGQX;LowMQ	END=16915376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:6:12
chr1	16915377	.	G	.	.	LowGQX;LowMQ	END=16915378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:9:12
chr1	16915379	.	C	.	.	LowGQX;LowMQ	END=16915380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:15:13
chr1	16915381	.	A	.	.	LowGQX;LowMQ	END=16915383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:9:11
chr1	16915384	.	C	.	.	LowGQX;LowMQ	END=16915404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:12:9
chr1	16915405	.	G	.	13.57	LowGQX;LowMQ	DP=31;MQ=9;MQ0=27	GT:AD:DP:GQ:MQ:GQX	0/0:22:31:0.09:9:0
chr1	16915406	.	A	.	.	LowGQX;LowMQ	END=16915424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:12:9
chr1	16915425	.	T	.	.	LowGQX;LowMQ	END=16915433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:15:11
chr1	16915434	.	T	C	34.95	LowMQ;LowQD;SB	BaseQRankSum=0.550;DP=41;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.9920;MQ=11;MQ0=34;MQRankSum=-1.754;QD=0.85;ReadPosRankSum=0.000;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,15:41:64.94:65,0,84:11:35:0.366
chr1	16915435	.	A	.	.	LowGQX;LowMQ	END=16915438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:15:11
chr1	16915439	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:40:0:11
chr1	16915440	.	G	.	.	LowGQX;LowMQ	END=16915442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:18:11
chr1	16915443	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:40:0:11
chr1	16915444	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:44:18:10
chr1	16915445	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:44:9:10
chr1	16915446	.	G	.	.	LowGQX;LowMQ	END=16915448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:15:10
chr1	16915449	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:44:12:10
chr1	16915450	.	G	.	.	LowGQX;LowMQ	END=16915452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:21:10
chr1	16915453	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:48:15:11
chr1	16915454	.	T	.	.	LowGQX;LowMQ	END=16915459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:21:11
chr1	16915460	.	T	.	.	LowGQX;LowMQ	END=16915463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:18:11
chr1	16915464	.	G	.	.	LowGQX;LowMQ	END=16915465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:21:10
chr1	16915466	.	T	.	.	LowGQX;LowMQ	END=16915468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:18:10
chr1	16915469	.	A	.	.	LowGQX;LowMQ	END=16915480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:21:10
chr1	16915481	.	G	.	.	LowMQ	END=16915482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:30:11
chr1	16915483	.	A	.	.	LowGQX;LowMQ	END=16915486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:24:11
chr1	16915487	.	C	.	.	LowMQ	END=16915489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:30:11
chr1	16915490	.	C	.	.	LowGQX;LowMQ	END=16915497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:21:11
chr1	16915498	.	T	.	.	LowGQX;LowMQ	END=16915500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:18:11
chr1	16915501	.	C	.	.	LowGQX;LowMQ	END=16915506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:24:10
chr1	16915507	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:52:15:10
chr1	16915508	.	C	.	.	LowGQX;LowMQ	END=16915519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:21:10
chr1	16915520	.	A	.	.	LowGQX;LowMQ	END=16915521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:18:10
chr1	16915522	.	C	.	.	LowGQX;LowMQ	END=16915523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:24:11
chr1	16915524	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:49:18:10
chr1	16915525	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:49:2:10
chr1	16915526	.	C	.	.	LowGQX;LowMQ	END=16915527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:18:11
chr1	16915528	.	T	.	.	LowGQX;LowMQ	END=16915529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:15:10
chr1	16915530	.	C	.	.	LowGQX;LowMQ	END=16915537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:12:9
chr1	16915538	.	T	.	.	LowGQX;LowMQ	END=16915540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:15:9
chr1	16915541	.	A	.	.	LowGQX;LowMQ	END=16915544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:12:9
chr1	16915545	.	G	.	.	LowGQX;LowMQ	END=16915547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:9:10
chr1	16915548	.	C	.	.	LowGQX;LowMQ	END=16915549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:15:10
chr1	16915550	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:42:12:10
chr1	16915551	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:42:0:10
chr1	16915552	.	A	.	.	LowGQX;LowMQ	END=16915557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:15:9
chr1	16915558	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:38:12:10
chr1	16916393	.	C	.	.	PASS	END=16916416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:37
chr1	16916417	.	C	.	.	PASS	END=16916496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:93:33
chr1	16918341	.	C	.	.	PASS	END=16918366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:54
chr1	16918367	.	G	.	.	PASS	END=16918413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:54
chr1	16918414	.	A	.	.	PASS	END=16918423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:56
chr1	16918424	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:0:56
chr1	16918425	.	T	.	.	PASS	END=16918446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:55
chr1	16918447	.	A	.	.	PASS	END=16918453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:55
chr1	16918454	.	G	A	8.44	LowGQX;LowQD;SB	BaseQRankSum=-1.211;DP=16;Dels=0.00;FS=3.136;HRun=0;HaplotypeScore=0.9469;MQ=55;MQ0=0;MQRankSum=-1.883;QD=0.53;ReadPosRankSum=-0.673;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,3:16:37.76:38,0,332:55:8:0.188
chr1	16918455	.	T	.	.	PASS	END=16918456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:55
chr1	16918457	.	G	C	44.07	PASS	BaseQRankSum=0.269;DP=16;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.9443;MQ=55;MQ0=0;MQRankSum=-1.883;QD=2.75;ReadPosRankSum=-0.404;SB=-10.49	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,3:16:74.07:74,0,325:55:44:0.188
chr1	16918458	.	A	.	.	PASS	END=16918463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:55
chr1	16918464	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:55
chr1	16918465	.	A	G	91.84	PASS	BaseQRankSum=0.061;DP=15;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.9947;MQ=55;MQ0=0;MQRankSum=-3.123;QD=6.12;ReadPosRankSum=-0.674;SB=-44.84	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:10,5:15:99:122,0,258:55:92:0.333
chr1	16918466	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:55
chr1	16918467	.	A	.	.	PASS	END=16918472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:54
chr1	16918473	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:0:54
chr1	16918474	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:54
chr1	16918475	.	C	.	.	LowGQX	END=16918492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:55
chr1	16918493	.	C	.	.	LowGQX	END=16918497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:56
chr1	16918498	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:56
chr1	16918499	.	G	.	.	LowGQX	END=16918501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:55
chr1	16918502	.	A	G	173.67	SB	BaseQRankSum=-0.572;DP=8;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9997;MQ=55;MQ0=0;MQRankSum=-1.067;QD=21.71;ReadPosRankSum=0.000;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,6:8:54.55:204,0,55:55:55:0.750
chr1	16918503	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:53
chr1	16918504	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:53
chr1	16918505	.	T	.	.	PASS	END=16918506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:53
chr1	16918507	.	A	.	.	LowGQX	END=16918516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:51
chr1	16999486	.	G	.	.	LowGQX;LowMQ	END=16999637	GT	./.
chr1	16999638	.	T	.	.	LowGQX	END=16999693	GT	./.
chr1	16999694	.	G	.	.	LowGQX;LowMQ	END=17000015	GT	./.
chr1	17017703	.	G	.	.	PASS	END=17017716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	17017717	.	C	T	494.90	PASS	BaseQRankSum=1.568;DP=116;Dels=0.00;FS=4.124;HRun=2;HaplotypeScore=22.0213;MQ=60;MQ0=0;MQRankSum=0.518;QD=4.27;ReadPosRankSum=-0.184;SB=-240.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:86,29:116:99:525,0,2265:60:99:0.252
chr1	17017718	.	T	.	.	PASS	END=17017733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	17017734	.	C	T	497.27	PASS	BaseQRankSum=2.325;DP=102;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.6281;MQ=60;MQ0=0;MQRankSum=0.508;QD=4.88;ReadPosRankSum=0.090;SB=-218.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:76,25:102:99:527,0,1754:60:99:0.248
chr1	17017735	.	G	.	.	PASS	END=17017750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	17017751	.	C	.	.	PASS	END=17017802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	17022926	.	T	.	.	PASS	END=17022934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:81:60
chr1	17022935	.	C	.	.	PASS	END=17022951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	17022952	.	C	A	2619.98	PASS	DP=95;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=18.0862;MQ=60;MQ0=0;QD=27.58;SB=-333.33	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,95:95:99:2653,208,0:60:99:1.000
chr1	17022953	.	C	.	.	PASS	END=17022980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	17022981	.	A	.	.	PASS	END=17022998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	17022999	.	G	.	.	PASS	END=17023019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	17023020	.	T	.	.	PASS	END=17023067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	17023068	.	G	.	.	PASS	END=17023109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr1	17023110	.	G	A	677.29	PASS	BaseQRankSum=2.947;DP=242;Dels=0.00;FS=3.167;HRun=0;HaplotypeScore=14.4045;MQ=60;MQ0=0;MQRankSum=0.065;QD=2.80;ReadPosRankSum=0.557;SB=-403.58	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:200,41:242:99:707,0,5719:60:99:0.170
chr1	17023111	.	G	.	.	PASS	END=17023142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:60
chr1	17023143	.	C	T	3369.90	PASS	BaseQRankSum=1.752;DP=235;Dels=0.00;FS=0.501;HRun=0;HaplotypeScore=16.2026;MQ=60;MQ0=0;MQRankSum=-2.077;QD=14.34;ReadPosRankSum=0.167;SB=-1676.61	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:102,132:235:99:3370,0,2568:60:99:0.564
chr1	17023144	.	G	.	.	PASS	END=17023160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	17023161	.	G	.	.	PASS	END=17023181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	17023182	.	C	G	2991.03	PASS	BaseQRankSum=1.931;DP=154;Dels=0.00;FS=3.414;HRun=0;HaplotypeScore=19.3014;MQ=60;MQ0=0;MQRankSum=-1.010;QD=19.42;ReadPosRankSum=0.362;SB=-1406.59	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:41,110:154:99:3021,0,901:60:99:0.728
chr1	17023183	.	A	.	.	PASS	END=17023189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	17023274	.	C	.	.	PASS	END=17023304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	17023305	.	A	.	.	PASS	END=17023353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	17023354	.	C	.	.	PASS	END=17023375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr1	17023376	.	C	T	3637.40	PASS	BaseQRankSum=2.045;DP=247;Dels=0.00;FS=1.072;HRun=0;HaplotypeScore=20.0207;MQ=60;MQ0=0;MQRankSum=-0.286;QD=14.73;ReadPosRankSum=0.570;SB=-1678.60	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:101,145:247:99:3637,0,2551:60:99:0.589
chr1	17023377	.	G	.	.	PASS	END=17023402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr1	17023403	.	G	A	655.30	PASS	BaseQRankSum=3.493;DP=239;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=43.7016;MQ=60;MQ0=0;MQRankSum=-0.775;QD=2.74;ReadPosRankSum=0.455;SB=-254.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:196,41:239:99:685,0,5186:60:99:0.173
chr1	17023404	.	T	.	.	PASS	END=17023419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	17025910	.	C	.	.	LowGQX	END=17025911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:12:58
chr1	17025912	.	C	.	.	LowGQX	END=17025916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:15:58
chr1	17025917	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:12:58
chr1	17025918	.	C	.	.	LowGQX	END=17025920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:15:58
chr1	17025921	.	T	.	.	LowGQX	END=17025923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:12:58
chr1	17025924	.	C	.	.	LowGQX	END=17025926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:15:58
chr1	17025927	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:9:60
chr1	17025928	.	G	.	.	LowGQX	END=17025932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	17025933	.	A	.	45.04	LowGQX	DP=10;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:15.05:60:15
chr1	17025934	.	G	.	.	LowGQX	END=17025938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	17025939	.	A	.	.	LowGQX	END=17025940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:12:60
chr1	17025941	.	C	.	.	LowGQX	END=17025946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	17025947	.	T	.	.	LowGQX	END=17025949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	17025950	.	C	.	.	LowGQX	END=17025954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	17025955	.	G	.	.	LowGQX	END=17025966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	17025967	.	G	.	.	PASS	END=17025968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	17025969	.	C	.	.	LowGQX	END=17025974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	17025975	.	G	.	.	PASS	END=17025991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	17025992	.	G	A	74.78	PASS	BaseQRankSum=1.256;DP=13;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.696;QD=5.75;ReadPosRankSum=-0.978;SB=-63.41	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:8,5:13:99:105,0,178:60:75:0.385
chr1	17025993	.	G	.	.	PASS	END=17025995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	17025996	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	17025997	.	C	.	.	PASS	END=17026001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	17026002	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	17026003	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	17026004	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:0:60
chr1	17026005	.	T	.	.	PASS	END=17026009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	17026010	.	G	.	.	PASS	END=17026043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:60
chr1	17026043	.	G	GGCA	583.58	PASS	BaseQRankSum=3.023;DP=25;FS=0.000;HRun=0;HaplotypeScore=79.2189;MQ=61;MQ0=0;MQRankSum=0.361;QD=23.34;ReadPosRankSum=1.304;SB=-290.34	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:10,6:25:99:623,0,470:61:99:0.375
chr1	17026044	.	G	.	.	PASS	END=17026086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:42:61
chr1	17026087	.	G	A	336.03	PASS	BaseQRankSum=0.542;DP=34;Dels=0.00;FS=3.473;HRun=0;HaplotypeScore=0.0000;MQ=61;MQ0=0;MQRankSum=0.087;QD=9.88;ReadPosRankSum=-0.332;SB=-181.24	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:14,20:34:99:366,0,251:61:99:0.588
chr1	17026088	.	T	.	.	PASS	END=17026116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:48:61
chr1	17026354	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:60:60
chr1	17026355	.	T	.	.	PASS	END=17026369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:96:59
chr1	17026370	.	A	.	.	PASS	END=17026392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:59
chr1	17026393	.	C	.	.	PASS	END=17026407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:59
chr1	17026408	.	G	.	.	PASS	END=17026419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:59
chr1	17026420	.	G	.	.	PASS	END=17026427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:59
chr1	17026428	.	C	.	.	PASS	END=17026434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:59
chr1	17026435	.	G	.	.	PASS	END=17026543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	17029196	.	C	.	.	PASS	END=17029260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:57
chr1	17029261	.	C	.	.	PASS	END=17029290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:57
chr1	17029291	.	A	.	.	PASS	END=17029302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:57
chr1	17029303	.	G	.	.	PASS	END=17029316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:56
chr1	17029317	.	A	.	.	PASS	END=17029335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:57
chr1	17029336	.	G	.	.	PASS	END=17029349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:93:58
chr1	17029350	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:57:27:59
chr1	17029351	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:30:59
chr1	17029352	.	G	.	.	PASS	END=17029367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:90:59
chr1	17029368	.	G	.	.	PASS	END=17029373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:59
chr1	17029374	.	A	.	.	PASS	END=17029380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:59
chr1	17029381	.	T	.	.	PASS	END=17029444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:59
chr1	17029445	.	T	.	.	PASS	END=17029461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	17029462	.	A	G	401.70	PASS	BaseQRankSum=0.682;DP=138;Dels=0.00;FS=0.833;HRun=2;HaplotypeScore=32.1952;MQ=60;MQ0=0;MQRankSum=-0.398;QD=2.91;ReadPosRankSum=-0.786;SB=-285.03	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:109,27:138:99:432,0,2672:60:99:0.199
chr1	17029463	.	A	.	.	PASS	END=17029467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	17030438	.	C	.	.	PASS	END=17030467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	17030468	.	A	.	.	PASS	END=17030493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	17030494	.	T	.	.	PASS	END=17030503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	17030504	.	T	A	714.51	PASS	BaseQRankSum=2.410;DP=227;Dels=0.00;FS=7.008;HRun=0;HaplotypeScore=17.1295;MQ=60;MQ0=0;MQRankSum=-0.559;QD=3.15;ReadPosRankSum=0.968;SB=-304.78	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:186,38:227:99:745,0,4267:60:99:0.170
chr1	17030505	.	G	.	.	PASS	END=17030514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	17030515	.	G	A	567.75	PASS	BaseQRankSum=0.912;DP=229;Dels=0.00;FS=7.341;HRun=1;HaplotypeScore=21.8744;MQ=60;MQ0=0;MQRankSum=-1.623;QD=2.48;ReadPosRankSum=1.367;SB=-173.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:190,38:229:99:598,0,4628:60:99:0.167
chr1	17030516	.	A	.	.	PASS	END=17030517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr1	17030518	.	C	T	576.24	PASS	BaseQRankSum=1.754;DP=231;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=20.9275;MQ=60;MQ0=0;MQRankSum=-0.012;QD=2.49;ReadPosRankSum=1.890;SB=-315.70	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:193,38:231:99:606,0,4565:60:99:0.165
chr1	17030519	.	T	G	691.09	PASS	BaseQRankSum=1.413;DP=232;Dels=0.00;FS=1.452;HRun=1;HaplotypeScore=20.9275;MQ=60;MQ0=0;MQRankSum=-1.407;QD=2.98;ReadPosRankSum=1.625;SB=-359.47	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:192,40:232:99:721,0,4065:60:99:0.172
chr1	17030520	.	G	.	.	PASS	END=17030589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	17030590	.	G	A	645.64	PASS	BaseQRankSum=3.206;DP=200;Dels=0.00;FS=2.421;HRun=0;HaplotypeScore=25.7222;MQ=60;MQ0=0;MQRankSum=-0.166;QD=3.23;ReadPosRankSum=0.780;SB=-245.29	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:163,35:200:99:676,0,4135:60:99:0.177
chr1	17030591	.	C	.	.	PASS	END=17030631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	17030632	.	T	.	.	PASS	END=17030639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	17033783	.	C	.	.	PASS	END=17033804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:465:99:59
chr1	17033805	.	C	T	1654.53	PASS	BaseQRankSum=0.484;DP=547;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=39.9265;MQ=59;MQ0=0;MQRankSum=-4.614;QD=3.02;ReadPosRankSum=0.332;SB=-997.92	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:434,111:547:99:1685,0,11099:59:99:0.204
chr1	17033806	.	A	.	.	PASS	END=17033853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:513:99:59
chr1	17033854	.	C	T	7797.31	PASS	BaseQRankSum=4.190;DP=557;Dels=0.00;FS=5.007;HRun=0;HaplotypeScore=76.1596;MQ=59;MQ0=0;MQRankSum=-2.309;QD=14.00;ReadPosRankSum=1.018;SB=-4736.21	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:213,341:557:99:7797,0,4767:59:99:0.616
chr1	17033855	.	G	.	.	PASS	END=17033914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:448:99:59
chr1	17033915	.	C	.	.	PASS	END=17033934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:331:99:60
chr1	17033935	.	G	.	.	PASS	END=17033947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:249:99:60
chr1	17033948	.	C	.	.	PASS	END=17033980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	17033981	.	C	.	.	PASS	END=17034005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:59
chr1	17034006	.	A	.	.	PASS	END=17034035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:58
chr1	17034036	.	T	.	.	PASS	END=17034040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:57
chr1	17034041	.	T	C	2566.83	PASS	DP=82;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=19.0761;MQ=57;MQ0=1;QD=31.30;SB=-993.92	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,82:82:99:2600,202,0:57:99:1.000
chr1	17034042	.	C	.	.	PASS	END=17034072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:57
chr1	17034073	.	C	.	.	PASS	END=17034111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:54
chr1	17034112	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:53:0:55
chr1	17034113	.	T	.	.	PASS	END=17034139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:55
chr1	17034140	.	C	G	205.05	PASS	BaseQRankSum=2.248;DP=54;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=11.3630;MQ=56;MQ0=1;MQRankSum=-1.634;QD=3.80;ReadPosRankSum=-1.963;SB=-30.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,12:54:99:235,0,1149:56:99:0.222
chr1	17034141	.	T	.	.	PASS	END=17034166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:56
chr1	17034167	.	G	A	131.49	PASS	BaseQRankSum=0.987;DP=48;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=57;MQ0=1;MQRankSum=-0.933;QD=2.74;ReadPosRankSum=0.689;SB=-30.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,10:48:99:161,0,1098:57:99:0.208
chr1	17034168	.	T	.	.	PASS	END=17034197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:57
chr1	17034198	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:59
chr1	17034199	.	C	.	.	PASS	END=17034205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:59
chr1	17034206	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:56:59
chr1	17034207	.	C	.	.	PASS	END=17034220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:59
chr1	17034221	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:60:59
chr1	17034222	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:99:59
chr1	17034387	.	C	.	.	PASS	END=17034403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	17034404	.	G	.	.	PASS	END=17034431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	17034432	.	C	.	.	PASS	END=17034531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:59
chr1	17034532	.	T	.	.	PASS	END=17034554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:59
chr1	17034555	.	G	.	.	PASS	END=17034573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:58
chr1	17046449	.	G	.	.	PASS	END=17046455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	17046456	.	T	C	982.29	PASS	BaseQRankSum=-0.434;DP=58;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=16.1499;MQ=60;MQ0=0;MQRankSum=-0.107;QD=16.94;ReadPosRankSum=-1.467;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:22,35:58:99:1012,0,655:60:99:0.614
chr1	17046457	.	A	.	.	PASS	END=17046480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	17046481	.	G	.	.	PASS	END=17046507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	17046508	.	C	.	.	PASS	END=17046517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	17046518	.	G	.	.	PASS	END=17046544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	17046545	.	G	.	.	PASS	END=17046548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr1	17083726	.	C	.	.	LowGQX	END=17083729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:31
chr1	17083730	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:18:31
chr1	17083731	.	C	.	.	LowGQX	END=17083736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:31
chr1	17083737	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:32
chr1	17083738	.	T	.	.	LowGQX	END=17083739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:27:31
chr1	17083740	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:31
chr1	17083741	.	T	.	.	LowGQX	END=17083742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:27:31
chr1	17083743	.	A	.	.	PASS	END=17083746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:31
chr1	17083747	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:30
chr1	17083748	.	G	.	.	PASS	END=17083749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:30
chr1	17083750	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:30
chr1	17083751	.	A	.	.	PASS	END=17083753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:30
chr1	17083754	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:2:30
chr1	17083755	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:30:30
chr1	17083756	.	A	.	.	LowGQX	END=17083757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:24:30
chr1	17083758	.	T	.	.	PASS	END=17083764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:28
chr1	17083765	.	A	.	.	LowGQX	END=17083767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:24:28
chr1	17083768	.	C	.	.	PASS	END=17083770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:28
chr1	17083771	.	A	.	.	LowGQX	END=17083772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:21:28
chr1	17083773	.	A	.	.	PASS	END=17083775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:27
chr1	17083776	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:5:26
chr1	17083777	.	G	.	.	PASS	END=17083781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:26
chr1	17083782	.	A	.	.	PASS	END=17083786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:27
chr1	17083787	.	G	.	.	PASS	END=17083788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:33:27
chr1	17083789	.	C	.	.	PASS	END=17083794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:26
chr1	17083795	.	A	.	.	PASS	END=17083797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:33:25
chr1	17083798	.	G	.	.	PASS	END=17083800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:39:25
chr1	17083801	.	A	.	.	PASS	END=17083805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:45:26
chr1	17083806	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:60:26
chr1	17083807	.	T	C	536.20	PASS	DP=32;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=10.4689;MQ=26;MQ0=8;QD=16.76;SB=-283.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,31:32:48.14:569,48,0:26:48:1.000
chr1	17083808	.	G	A	11.02	LowGQX;LowQD;SB	BaseQRankSum=1.167;DP=32;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=10.4689;MQ=26;MQ0=8;MQRankSum=-2.833;QD=0.34;ReadPosRankSum=-2.500;SB=-1.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:25,7:32:40.66:41,0,407:26:11:0.219
chr1	17083809	.	C	.	.	PASS	END=17083815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:48:26
chr1	17083816	.	G	A	43.96	LowQD	BaseQRankSum=1.102;DP=32;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=10.4689;MQ=26;MQ0=8;MQRankSum=-2.038;QD=1.37;ReadPosRankSum=-2.038;SB=-18.26	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:23,8:32:73.96:74,0,436:26:44:0.258
chr1	17083817	.	G	.	.	PASS	END=17083820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:42:26
chr1	17083821	.	G	.	.	PASS	END=17083828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:45:26
chr1	17083829	.	A	.	.	PASS	END=17083838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:51:27
chr1	17083839	.	A	.	.	PASS	END=17083862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:57:27
chr1	17083863	.	C	.	.	PASS	END=17083867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:60:27
chr1	17083868	.	A	.	.	PASS	END=17083881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:57:27
chr1	17083882	.	A	.	.	PASS	END=17083885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:63:28
chr1	17083886	.	A	.	.	PASS	END=17083887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:54:27
chr1	17083888	.	C	T	131.31	PASS	BaseQRankSum=1.129;DP=39;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.3630;MQ=27;MQ0=9;MQRankSum=-1.929;QD=3.37;ReadPosRankSum=0.706;SB=-69.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:22,15:39:99:161,0,330:27:99:0.405
chr1	17084012	.	C	.	.	PASS	END=17084039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:39
chr1	17084040	.	T	.	.	PASS	END=17084099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:41
chr1	17084100	.	G	.	.	PASS	END=17084135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:42
chr1	17084136	.	T	.	.	PASS	END=17084152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:43
chr1	17084248	.	C	.	.	PASS	END=17084300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:54
chr1	17084301	.	A	.	.	PASS	END=17084355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:56
chr1	17084436	.	C	.	.	PASS	END=17084509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:42
chr1	17084510	.	G	A	492.52	PASS	BaseQRankSum=0.645;DP=193;Dels=0.00;FS=19.106;HRun=1;HaplotypeScore=13.7802;MQ=42;MQ0=13;MQRankSum=2.030;QD=2.55;ReadPosRankSum=-0.539;SB=-29.51	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:157,36:193:99:523,0,3637:42:99:0.187
chr1	17084511	.	G	.	.	PASS	END=17084536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:41
chr1	17084537	.	G	.	.	PASS	END=17084566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:37
chr1	17084567	.	C	.	.	PASS	END=17084583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:35
chr1	17084700	.	G	.	.	PASS	END=17084754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:42
chr1	17084755	.	T	C	1192.38	PASS	BaseQRankSum=-0.620;DP=145;Dels=0.00;FS=1.690;HRun=0;HaplotypeScore=7.7210;MQ=42;MQ0=33;MQRankSum=-8.807;QD=8.22;ReadPosRankSum=-0.806;SB=-505.49	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:56,89:145:99:1222,0,1432:42:99:0.614
chr1	17084756	.	A	.	.	PASS	END=17084799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:35
chr1	17084960	.	C	.	.	PASS	END=17084967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:48
chr1	17084968	.	G	C	1757.45	PASS	BaseQRankSum=-0.574;DP=242;Dels=0.00;FS=1.790;HRun=2;HaplotypeScore=25.0923;MQ=48;MQ0=9;MQRankSum=-3.204;QD=7.26;ReadPosRankSum=1.164;SB=-805.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:139,103:242:99:1787,0,3230:48:99:0.426
chr1	17084969	.	C	.	.	PASS	END=17085062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:45
chr1	17085063	.	T	.	.	PASS	END=17085081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:43
chr1	17085139	.	G	.	.	PASS	END=17085164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:24
chr1	17085165	.	G	C	1918.73	PASS	DP=117;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=4.5216;MQ=24;MQ0=43;QD=16.40;SB=-475.74	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,117:117:99:1952,174,0:24:99:1.000
chr1	17085166	.	T	.	.	PASS	END=17085167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:24
chr1	17085168	.	A	T	40.89	LowQD;SB	BaseQRankSum=0.545;DP=125;Dels=0.00;FS=7.819;HRun=0;HaplotypeScore=3.5747;MQ=25;MQ0=45;MQRankSum=-0.461;QD=0.33;ReadPosRankSum=1.355;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:107,18:125:70.88:71,0,1452:25:41:0.144
chr1	17085169	.	C	.	.	PASS	END=17085236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:23
chr1	17085237	.	A	.	.	PASS	END=17085238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:23
chr1	17085297	.	C	.	.	PASS	END=17085321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:25
chr1	17085322	.	C	.	.	PASS	END=17085344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:33
chr1	17085345	.	G	.	.	PASS	END=17085379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:308:99:41
chr1	17085380	.	G	.	.	PASS	END=17085411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:402:99:42
chr1	17085412	.	C	T	4926.24	PASS	BaseQRankSum=2.625;DP=432;Dels=0.00;FS=15.976;HRun=0;HaplotypeScore=62.6359;MQ=43;MQ0=50;MQRankSum=-10.536;QD=11.40;ReadPosRankSum=0.264;SB=-960.93	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:188,242:432:99:4926,0,3778:43:99:0.563
chr1	17085413	.	G	.	.	PASS	END=17085426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:433:99:43
chr1	17085427	.	T	C	5241.63	PASS	BaseQRankSum=2.234;DP=443;Dels=0.00;FS=8.696;HRun=0;HaplotypeScore=49.4258;MQ=44;MQ0=42;MQRankSum=-13.378;QD=11.83;ReadPosRankSum=1.446;SB=-1378.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:154,285:443:99:5242,0,3601:44:99:0.649
chr1	17085428	.	G	.	.	PASS	END=17085501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:358:99:42
chr1	17085502	.	T	C	3149.91	PASS	BaseQRankSum=2.900;DP=374;Dels=0.00;FS=17.755;HRun=1;HaplotypeScore=40.1865;MQ=42;MQ0=26;MQRankSum=-0.608;QD=8.42;ReadPosRankSum=1.165;SB=-974.58	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:235,137:374:99:3180,0,4585:42:99:0.368
chr1	17085503	.	C	.	.	PASS	END=17085530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:341:99:41
chr1	17085560	.	C	.	.	PASS	END=17085563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:451:99:40
chr1	17085564	.	A	G	5918.91	PASS	BaseQRankSum=1.327;DP=453;Dels=0.00;FS=9.783;HRun=1;HaplotypeScore=36.9241;MQ=40;MQ0=53;MQRankSum=-13.762;QD=13.07;ReadPosRankSum=-0.202;SB=-2957.99	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:142,309:453:99:5919,0,3525:40:99:0.685
chr1	17085565	.	G	.	.	PASS	END=17085663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:433:99:40
chr1	17085763	.	C	.	.	PASS	END=17085794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:262:99:45
chr1	17085795	.	G	T	705.44	SB	BaseQRankSum=1.190;DP=265;Dels=0.00;FS=21.919;HRun=0;HaplotypeScore=64.0713;MQ=47;MQ0=19;MQRankSum=-4.734;QD=2.66;ReadPosRankSum=1.648;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:212,53:265:99:735,0,5035:47:99:0.200
chr1	17085796	.	A	.	.	PASS	END=17085833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:250:99:47
chr1	17085834	.	G	T	3929.84	PASS	BaseQRankSum=3.845;DP=251;Dels=0.00;FS=29.365;HRun=0;HaplotypeScore=28.6704;MQ=49;MQ0=19;MQRankSum=-7.136;QD=15.66;ReadPosRankSum=-2.497;SB=-883.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:81,170:251:99:3930,0,1755:49:99:0.677
chr1	17085835	.	G	.	.	PASS	END=17085844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:50
chr1	17085845	.	A	.	.	PASS	END=17085864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:52
chr1	17085865	.	A	.	.	PASS	END=17085894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:56
chr1	17085970	.	C	.	.	PASS	END=17085991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:36
chr1	17085992	.	C	.	.	PASS	END=17085994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:37
chr1	17085995	.	G	.	204.43	PASS	DP=162;MQ=37;MQ0=10	GT:AD:DP:GQ:MQ:GQX	0/0:123:162:99:37:99
chr1	17085996	.	C	.	.	PASS	END=17086002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:37
chr1	17086003	.	G	.	.	PASS	END=17086013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:41
chr1	17086014	.	T	.	.	PASS	END=17086037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:40
chr1	17086038	.	A	.	.	PASS	END=17086051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:38
chr1	17086052	.	T	C	4027.93	PASS	DP=185;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=23.3540;MQ=38;MQ0=4;QD=21.77;SB=-1519.58	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,181:185:99:4028,316,0:38:99:1.000
chr1	17086053	.	G	.	.	PASS	END=17086086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:38
chr1	17086087	.	C	.	.	PASS	END=17086116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:37
chr1	17086117	.	G	.	.	PASS	END=17086181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:318:99:37
chr1	17086342	.	A	.	.	PASS	END=17086362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:25
chr1	17086363	.	G	.	.	PASS	END=17086438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:22
chr1	17086439	.	C	T	735.27	PASS	BaseQRankSum=-0.336;DP=261;Dels=0.00;FS=8.725;HRun=0;HaplotypeScore=13.2569;MQ=22;MQ0=107;MQRankSum=-0.301;QD=2.82;ReadPosRankSum=-1.463;SB=-187.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:172,86:261:99:765,0,1939:22:99:0.333
chr1	17086440	.	C	.	.	PASS	END=17086449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:20
chr1	17086450	.	C	G	950.32	PASS	BaseQRankSum=0.550;DP=240;Dels=0.00;FS=0.865;HRun=2;HaplotypeScore=8.0964;MQ=20;MQ0=110;MQRankSum=-3.000;QD=3.96;ReadPosRankSum=-1.526;SB=-417.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:121,118:240:99:980,0,1317:20:99:0.494
chr1	17086451	.	G	.	.	PASS	END=17086452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:20
chr1	17086453	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:239:99:19
chr1	17086454	.	G	.	.	PASS	END=17086455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:20
chr1	17086456	.	C	.	.	LowMQ	END=17086463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:19
chr1	17086464	.	T	C	856.97	LowMQ	BaseQRankSum=-0.423;DP=223;Dels=0.00;FS=5.183;HRun=0;HaplotypeScore=15.5013;MQ=19;MQ0=107;MQRankSum=-2.424;QD=3.84;ReadPosRankSum=-0.911;SB=-358.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:111,109:223:99:887,0,1148:19:99:0.495
chr1	17086465	.	T	.	.	LowMQ	END=17086484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:19
chr1	17086485	.	A	.	.	PASS	END=17086489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:20
chr1	17086490	.	T	.	.	LowMQ	END=17086502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:19
chr1	17086605	.	C	.	.	LowMQ	END=17086643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:14
chr1	17086644	.	T	.	.	LowMQ	END=17086672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:299:99:14
chr1	17086673	.	C	.	.	LowMQ	END=17086726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:364:99:16
chr1	17086727	.	C	.	.	PASS	END=17086737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:324:99:20
chr1	17086738	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:334:99:19
chr1	17086739	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:333:99:20
chr1	17086740	.	T	.	.	LowMQ	END=17086741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:332:99:19
chr1	17086742	.	C	.	.	PASS	END=17086767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:256:99:20
chr1	17086848	.	C	.	.	PASS	END=17086869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:23
chr1	17086870	.	T	C	1672.05	PASS	DP=118;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=8.5648;MQ=23;MQ0=41;QD=14.17;SB=-473.26	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,116:118:99:1705,150,0:23:99:1.000
chr1	17086871	.	G	.	.	PASS	END=17086882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:22
chr1	17086883	.	G	.	.	PASS	END=17086898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:23
chr1	17086899	.	G	.	.	PASS	END=17086940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:24
chr1	17086941	.	C	T	1007.87	PASS	BaseQRankSum=1.329;DP=221;Dels=0.00;FS=2.561;HRun=0;HaplotypeScore=18.0764;MQ=27;MQ0=108;MQRankSum=0.978;QD=4.56;ReadPosRankSum=2.029;SB=-91.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:159,61:221:99:1038,0,1671:27:99:0.277
chr1	17086942	.	G	.	.	PASS	END=17086976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:27
chr1	17086977	.	G	.	.	PASS	END=17086985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:286:99:33
chr1	17087063	.	C	.	.	PASS	END=17087064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:545:99:47
chr1	17087065	.	T	G	144.80	LowQD;SB	BaseQRankSum=1.360;DP=544;Dels=0.00;FS=73.754;HRun=1;HaplotypeScore=55.4055;MQ=47;MQ0=119;MQRankSum=-9.554;QD=0.27;ReadPosRankSum=0.209;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:377,165:544:99:175,0,9739:47:99:0.304
chr1	17087066	.	G	.	.	PASS	END=17087071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:533:99:47
chr1	17087072	.	G	.	297.77	PASS	DP=540;MQ=47;MQ0=129	GT:AD:DP:GQ:MQ:GQX	0/0:423:540:99:47:99
chr1	17087073	.	T	.	.	PASS	END=17087152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:523:99:41
chr1	17087153	.	G	.	.	PASS	END=17087178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:379:99:39
chr1	17087245	.	C	.	.	PASS	END=17087261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:374:99:47
chr1	17087262	.	C	T	5244.59	PASS	BaseQRankSum=4.138;DP=384;Dels=0.00;FS=27.085;HRun=1;HaplotypeScore=129.4999;MQ=49;MQ0=54;MQRankSum=-5.245;QD=13.66;ReadPosRankSum=-0.495;SB=-2948.04	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:131,250:384:99:5245,0,2612:49:99:0.656
chr1	17087263	.	C	.	.	PASS	END=17087291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:383:99:49
chr1	17087292	.	A	G	1831.50	PASS	BaseQRankSum=-0.700;DP=439;Dels=0.00;FS=45.585;HRun=0;HaplotypeScore=72.9030;MQ=52;MQ0=32;MQRankSum=-14.825;QD=4.17;ReadPosRankSum=-3.023;SB=-605.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:290,143:439:99:1861,0,7386:52:99:0.330
chr1	17087293	.	C	.	.	PASS	END=17087298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:437:99:52
chr1	17087299	.	T	C	2094.36	PASS	BaseQRankSum=1.975;DP=468;Dels=0.00;FS=25.420;HRun=0;HaplotypeScore=75.8482;MQ=53;MQ0=32;MQRankSum=-14.563;QD=4.48;ReadPosRankSum=-1.097;SB=-688.85	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:315,150:468:99:2124,0,8431:53:99:0.323
chr1	17087300	.	G	.	.	PASS	END=17087304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:471:99:53
chr1	17087305	.	G	C	2284.37	PASS	BaseQRankSum=0.149;DP=485;Dels=0.00;FS=16.392;HRun=0;HaplotypeScore=74.7343;MQ=53;MQ0=32;MQRankSum=-12.924;QD=4.71;ReadPosRankSum=-0.454;SB=-860.19	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:324,160:485:99:2314,0,8700:53:99:0.331
chr1	17087306	.	G	.	.	PASS	END=17087364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:485:99:53
chr1	17087365	.	C	G	12444.53	PASS	BaseQRankSum=1.051;DP=461;Dels=0.00;FS=1.662;HRun=1;HaplotypeScore=47.9066;MQ=55;MQ0=8;MQRankSum=0.443;QD=26.99;ReadPosRankSum=1.775;SB=-7184.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:5,454:461:99:12445,846,0:55:99:0.989
chr1	17087366	.	G	.	.	PASS	END=17087368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:463:99:55
chr1	17087449	.	C	.	.	PASS	END=17087464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:417:99:55
chr1	17087465	.	G	A	3917.37	PASS	BaseQRankSum=3.880;DP=426;Dels=0.00;FS=13.763;HRun=0;HaplotypeScore=76.3724;MQ=55;MQ0=6;MQRankSum=0.604;QD=9.20;ReadPosRankSum=-0.060;SB=-1648.49	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:247,174:426:99:3917,0,5717:55:99:0.413
chr1	17087466	.	G	.	.	PASS	END=17087520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:429:99:52
chr1	17087521	.	G	A	3550.49	PASS	BaseQRankSum=2.657;DP=486;Dels=0.00;FS=0.386;HRun=0;HaplotypeScore=52.0914;MQ=52;MQ0=23;MQRankSum=-4.038;QD=7.31;ReadPosRankSum=-0.857;SB=-1494.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:307,173:486:99:3550,0,7165:52:99:0.360
chr1	17087522	.	G	.	.	PASS	END=17087541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:409:99:50
chr1	17087541	.	GGTGCT	G	8888.85	PASS	BaseQRankSum=3.117;DP=410;FS=1.873;HRun=0;HaplotypeScore=1852.7061;MQ=50;MQ0=23;MQRankSum=-6.864;QD=21.68;ReadPosRankSum=2.817;SB=-3537.68	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:277,127:382:99:8889,0,18163:50:99:0.314
chr1	17087542	.	G	.	568.69	PASS	DP=404;MQ=50;MQ0=23	GT:AD:DP:GQ:MQ:GQX	0:273:276:99:50:99
chr1	17087543	.	T	.	547.63	PASS	DP=404;MQ=50;MQ0=23	GT:AD:DP:GQ:MQ:GQX	0:274:276:99:50:99
chr1	17087544	.	G	.	541.59	PASS	DP=392;MQ=50;MQ0=23	GT:AD:DP:GQ:MQ:GQX	0:263:264:99:50:99
chr1	17087545	.	C	.	556.66	PASS	DP=392;MQ=50;MQ0=23	GT:AD:DP:GQ:MQ:GQX	0:264:264:99:50:99
chr1	17087546	.	T	.	532.57	PASS	DP=391;MQ=49;MQ0=23	GT:AD:DP:GQ:MQ:GQX	0:264:264:99:49:99
chr1	17087547	.	G	.	.	PASS	END=17087576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:324:99:49
chr1	17087577	.	C	.	.	PASS	END=17087581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:297:99:48
chr1	17087582	.	G	A	5173.71	PASS	BaseQRankSum=2.947;DP=294;Dels=0.00;FS=1.113;HRun=1;HaplotypeScore=30.3136;MQ=48;MQ0=8;MQRankSum=-12.789;QD=17.60;ReadPosRankSum=-0.751;SB=-2175.46	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:80,213:294:99:5174,0,1799:48:99:0.727
chr1	17087583	.	A	.	.	PASS	END=17087597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:272:99:48
chr1	17090838	.	T	.	.	LowGQX;LowMQ	END=17090858	GT	./.
chr1	17090859	.	A	.	.	LowGQX	END=17090873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:27
chr1	17090874	.	G	.	33.01	LowGQX	DP=4;MQ=33;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:33:3
chr1	17090875	.	G	.	.	LowGQX	END=17090883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:33
chr1	17090884	.	C	.	33	LowGQX	DP=4;MQ=33;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:33:3
chr1	17090885	.	C	.	.	LowGQX	END=17090886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:33
chr1	17090887	.	G	.	.	LowGQX	.	GT	./.
chr1	17090888	.	A	.	.	LowGQX	END=17090892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:33
chr1	17090893	.	T	.	.	LowGQX	.	GT	./.
chr1	17090894	.	T	.	.	LowGQX	END=17090895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:33
chr1	17090896	.	C	.	.	LowGQX	.	GT	./.
chr1	17090897	.	T	.	.	LowGQX	END=17090906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:33
chr1	17090907	.	A	.	.	LowGQX	.	GT	./.
chr1	17090908	.	C	.	.	LowGQX	END=17090932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:33
chr1	17090933	.	A	.	.	LowGQX	END=17090947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:47
chr1	17090948	.	C	.	33	LowGQX	DP=2;MQ=47;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:47:3
chr1	17090949	.	C	.	.	LowGQX	END=17090953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:47
chr1	17090954	.	G	.	.	LowGQX	.	GT	./.
chr1	17090955	.	G	.	.	LowGQX	END=17090963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:47
chr1	17090964	.	G	.	.	LowGQX	.	GT	./.
chr1	17090965	.	G	.	.	LowGQX	END=17090991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:47
chr1	17197551	.	T	.	.	LowGQX	END=17197554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:57
chr1	17197555	.	C	T	3.07	LowGQ;LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=57;MQ0=0;MQRankSum=-0.736;QD=1.02;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:25.53:30,0,26:57:3:0.333
chr1	17197556	.	T	.	.	LowGQX	END=17197562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:57
chr1	17197563	.	G	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=57;MQ0=0;MQRankSum=-0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:57:5:0.333
chr1	17197564	.	C	.	.	LowGQX	END=17197570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:56
chr1	17197571	.	G	A	45.06	LowGQ;LowGQX	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=56;MQ0=0;MQRankSum=-0.727;QD=11.27;ReadPosRankSum=-0.727;SB=-31.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,3:4:27.10:75,0,27:56:27:0.750
chr1	17197572	.	C	.	.	LowGQX	END=17197594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:54
chr1	17197595	.	A	C	50.52	LowGQ;LowGQX	BaseQRankSum=0.731;DP=5;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=54;MQ0=0;MQRankSum=-0.731;QD=10.10;ReadPosRankSum=-0.731;SB=-70.86	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,4:5:27.10:81,0,27:54:27:0.800
chr1	17197596	.	C	.	.	LowGQX	END=17197608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:51
chr1	17197609	.	T	C	83.63	LowGQ;LowGQX	BaseQRankSum=-0.736;DP=6;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=3.9436;MQ=51;MQ0=0;MQRankSum=-0.736;QD=13.94;ReadPosRankSum=-0.736;SB=-67.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,5:6:27.28:114,0,27:51:27:0.833
chr1	17197610	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:51
chr1	17197611	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:51
chr1	17197612	.	C	A	4.59	LowGQX;LowQD	BaseQRankSum=0.720;DP=6;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.9436;MQ=51;MQ0=0;MQRankSum=-0.720;QD=0.77;ReadPosRankSum=0.720;SB=-27.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:4,2:6:32.73:33,0,108:51:5:0.333
chr1	17197613	.	A	.	.	LowGQX	END=17197614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:51
chr1	17197615	.	C	A	93.63	LowGQ;LowGQX	BaseQRankSum=0.736;DP=6;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=3.9436;MQ=51;MQ0=0;MQRankSum=-0.736;QD=15.61;ReadPosRankSum=-0.736;SB=-72.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,5:6:9.03:126,9,0:51:9:0.833
chr1	17197616	.	A	.	.	LowGQX	END=17197618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:51
chr1	17197619	.	A	G	79.06	LowGQ;LowGQX	BaseQRankSum=-0.736;DP=6;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=3.9436;MQ=51;MQ0=0;MQRankSum=-0.736;QD=13.18;ReadPosRankSum=-0.736;SB=-78.64	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,5:6:27.28:109,0,27:51:27:0.833
chr1	17197620	.	G	.	.	LowGQX	END=17197636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:51
chr1	17197637	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:51
chr1	17197638	.	C	.	.	LowGQX	END=17197650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:51
chr1	17198292	.	A	.	.	LowGQX	END=17198643	GT	./.
chr1	17248434	.	C	.	.	LowGQX	END=17248593	GT	./.
chr1	17249156	.	A	.	.	LowGQX	END=17249295	GT	./.
chr1	17250818	.	A	.	.	LowGQX	END=17250828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17250829	.	C	.	.	LowGQX	.	GT	./.
chr1	17250830	.	G	.	.	LowGQX	END=17250840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17250841	.	T	.	.	LowGQX	.	GT	./.
chr1	17250842	.	G	.	.	LowGQX	END=17250898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17250899	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	17250900	.	G	.	.	LowGQX	END=17250915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17250916	.	C	A	3.07	LowGQX;LowQD;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=1.53;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:30,0,33:60:3:0.500
chr1	17250917	.	C	.	.	LowGQX	END=17250929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17250930	.	G	.	.	LowGQX	.	GT	./.
chr1	17250931	.	A	.	.	LowGQX	END=17250934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17250935	.	C	.	.	LowGQX	.	GT	./.
chr1	17250936	.	G	.	.	LowGQX	END=17250939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17250940	.	A	.	.	LowGQX	.	GT	./.
chr1	17250941	.	G	.	.	LowGQX	END=17250963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17250964	.	T	.	.	LowGQX	.	GT	./.
chr1	17250965	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17250966	.	A	.	.	LowGQX	.	GT	./.
chr1	17250967	.	G	.	.	LowGQX	END=17250976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17256339	.	A	.	.	LowGQX	END=17256352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17256353	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	17256354	.	T	.	.	LowGQX	END=17256397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17256398	.	C	.	.	LowGQX	END=17256399	GT	./.
chr1	17256400	.	G	.	.	LowGQX	END=17256401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17256402	.	T	.	.	LowGQX	.	GT	./.
chr1	17256403	.	A	.	.	LowGQX	END=17256413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17256414	.	T	.	.	LowGQX	.	GT	./.
chr1	17256415	.	G	.	.	LowGQX	END=17256418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17256419	.	T	.	.	LowGQX	.	GT	./.
chr1	17256420	.	T	.	.	LowGQX	END=17256424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17256425	.	A	.	.	LowGQX	.	GT	./.
chr1	17256426	.	G	.	.	LowGQX	END=17256437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17256438	.	A	.	.	LowGQX	.	GT	./.
chr1	17256439	.	G	.	.	LowGQX	END=17256465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17256466	.	G	.	.	LowGQX	END=17256528	GT	./.
chr1	17256611	.	A	.	.	LowGQX	END=17256710	GT	./.
chr1	17256762	.	T	.	.	LowGQX	END=17256861	GT	./.
chr1	17256922	.	A	.	.	LowGQX	END=17257091	GT	./.
chr1	17257784	.	A	.	.	LowGQX	END=17257870	GT	./.
chr1	17257871	.	A	.	.	LowGQX	END=17257894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17263130	.	A	.	.	LowGQX	END=17263370	GT	./.
chr1	17264134	.	A	.	.	LowGQX	END=17264234	GT	./.
chr1	17264887	.	C	.	.	LowGQX	END=17264916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17264917	.	A	.	.	LowGQX	END=17264986	GT	./.
chr1	17265332	.	G	.	.	LowGQX	END=17265701	GT	./.
chr1	17266387	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17266388	.	G	.	.	LowGQX	.	GT	./.
chr1	17266389	.	G	.	.	LowGQX	END=17266390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17266391	.	C	.	.	LowGQX	.	GT	./.
chr1	17266392	.	A	.	.	LowGQX	END=17266404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17266405	.	A	.	.	LowGQX	.	GT	./.
chr1	17266406	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17266407	.	G	.	.	LowGQX	.	GT	./.
chr1	17266408	.	A	.	.	LowGQX	END=17266411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17266412	.	A	.	.	LowGQX	.	GT	./.
chr1	17266413	.	A	.	.	LowGQX	END=17266414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17266415	.	C	.	.	LowGQX	END=17266417	GT	./.
chr1	17266418	.	G	.	.	LowGQX	END=17266420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17266421	.	C	.	.	LowGQX	.	GT	./.
chr1	17266422	.	C	.	.	LowGQX	END=17266432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17266433	.	C	.	.	LowGQX	.	GT	./.
chr1	17266434	.	C	.	.	LowGQX	END=17266437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17266438	.	G	.	.	LowGQX	.	GT	./.
chr1	17266439	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17266440	.	A	.	.	LowGQX	.	GT	./.
chr1	17266441	.	A	.	.	LowGQX	END=17266450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17266451	.	C	.	.	LowGQX	.	GT	./.
chr1	17266452	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17266453	.	A	.	.	LowGQX	END=17266577	GT	./.
chr1	17266578	.	C	.	.	LowGQX	END=17266588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17266589	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	17266590	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17267267	.	G	.	.	LowGQX	END=17267351	GT	./.
chr1	17267352	.	C	.	.	LowGQX	END=17267388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17267389	.	T	.	.	LowGQX	END=17267486	GT	./.
chr1	17270593	.	A	.	.	LowGQX	END=17270779	GT	./.
chr1	17271924	.	A	.	.	LowGQX	END=17272103	GT	./.
chr1	17272752	.	A	.	.	LowGQX	END=17272833	GT	./.
chr1	17272834	.	C	.	.	LowGQX	END=17272838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17272839	.	T	.	.	LowGQX	.	GT	./.
chr1	17272840	.	G	.	.	LowGQX	END=17272842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17272843	.	C	.	.	LowGQX	.	GT	./.
chr1	17272844	.	G	.	.	LowGQX	END=17272845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17272846	.	C	.	.	LowGQX	.	GT	./.
chr1	17272847	.	C	.	.	LowGQX	END=17272856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17272857	.	G	.	.	LowGQX	.	GT	./.
chr1	17272858	.	C	.	.	LowGQX	END=17272889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17272890	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	17272891	.	T	.	.	LowGQX	END=17272902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	17273254	.	A	.	.	LowGQX	END=17273258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17273259	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	17273260	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17273261	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	17273262	.	G	.	.	LowGQX	END=17273273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17273274	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	17273275	.	C	.	.	LowGQX	END=17273278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17273279	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	17273280	.	C	.	.	LowGQX	END=17273312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17273313	.	A	.	.	LowGQX	.	GT	./.
chr1	17273314	.	C	.	.	LowGQX	END=17273320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17273321	.	G	.	.	LowGQX	.	GT	./.
chr1	17273322	.	C	.	.	LowGQX	END=17273340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17273341	.	T	.	.	LowGQX	END=17273342	GT	./.
chr1	17273343	.	G	.	.	LowGQX	END=17273346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17273347	.	A	.	.	LowGQX	END=17273488	GT	./.
chr1	17274824	.	A	.	.	LowGQX	END=17274868	GT	./.
chr1	17274869	.	C	.	.	LowGQX	END=17274971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17274972	.	T	.	.	LowGQX	END=17274994	GT	./.
chr1	17274995	.	T	.	.	LowGQX	END=17275021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17275292	.	A	.	.	LowGQX	END=17275331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17275332	.	T	.	.	LowGQX	END=17275423	GT	./.
chr1	17277446	.	A	.	.	LowGQX	END=17277619	GT	./.
chr1	17279795	.	A	.	.	LowGQX	END=17279978	GT	./.
chr1	17280716	.	A	.	.	LowGQX	END=17280854	GT	./.
chr1	17281227	.	A	.	.	LowGQX	END=17281374	GT	./.
chr1	17281777	.	C	.	.	LowGQX	END=17281848	GT	./.
chr1	17281849	.	C	.	.	LowGQX	END=17281858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17281859	.	T	.	.	LowGQX	.	GT	./.
chr1	17281860	.	G	.	.	LowGQX	END=17281873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17281874	.	T	.	.	LowGQX	.	GT	./.
chr1	17281875	.	G	.	.	LowGQX	END=17281887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17281888	.	A	.	.	LowGQX	.	GT	./.
chr1	17281889	.	A	.	.	LowGQX	END=17281895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17281896	.	T	.	.	LowGQX	.	GT	./.
chr1	17281897	.	G	.	.	LowGQX	END=17281918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17281919	.	T	.	.	LowGQX	.	GT	./.
chr1	17281920	.	G	.	.	LowGQX	END=17281964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17281965	.	T	.	.	LowGQX	.	GT	./.
chr1	17281966	.	G	.	.	LowGQX	END=17281999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17282000	.	A	.	.	LowGQX	END=17282047	GT	./.
chr1	17282460	.	C	.	.	LowGQX	END=17282653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17285056	.	T	.	.	LowGQX	END=17285229	GT	./.
chr1	17285230	.	G	.	.	LowGQX	END=17285247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17287242	.	C	.	.	LowGQX	END=17287279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17287280	.	G	.	.	LowGQX	.	GT	./.
chr1	17287281	.	A	.	.	LowGQX	END=17287334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17287335	.	A	.	.	LowGQX	END=17287635	GT	./.
chr1	17292216	.	A	.	.	LowGQX	END=17292389	GT	./.
chr1	17292492	.	A	.	.	LowGQX	.	GT	./.
chr1	17292493	.	G	.	.	LowGQX	END=17292495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292496	.	C	.	.	LowGQX	END=17292497	GT	./.
chr1	17292498	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292499	.	A	.	.	LowGQX	.	GT	./.
chr1	17292500	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292501	.	T	.	.	LowGQX	.	GT	./.
chr1	17292502	.	T	.	.	LowGQX	END=17292504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292505	.	G	.	.	LowGQX	END=17292506	GT	./.
chr1	17292507	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292508	.	C	.	.	LowGQX	END=17292509	GT	./.
chr1	17292510	.	A	.	.	LowGQX	END=17292515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292516	.	G	.	.	LowGQX	.	GT	./.
chr1	17292517	.	T	.	.	LowGQX	END=17292521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292522	.	T	.	.	LowGQX	END=17292523	GT	./.
chr1	17292524	.	A	.	.	LowGQX	END=17292527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292528	.	G	.	.	LowGQX	END=17292529	GT	./.
chr1	17292530	.	C	.	.	LowGQX	END=17292532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292533	.	C	.	.	LowGQX	END=17292534	GT	./.
chr1	17292535	.	G	.	.	LowGQX	END=17292539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292540	.	A	.	.	LowGQX	END=17292542	GT	./.
chr1	17292543	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292544	.	G	.	.	LowGQX	.	GT	./.
chr1	17292545	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292546	.	A	.	.	LowGQX	.	GT	./.
chr1	17292547	.	G	.	.	LowGQX	END=17292549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292550	.	T	.	.	LowGQX	END=17292565	GT	./.
chr1	17292566	.	A	.	.	LowGQX	END=17292567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292568	.	C	.	.	LowGQX	END=17292569	GT	./.
chr1	17292570	.	C	.	.	LowGQX	END=17292573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292574	.	G	.	.	LowGQX	.	GT	./.
chr1	17292575	.	G	.	.	LowGQX	END=17292577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292578	.	A	.	.	LowGQX	.	GT	./.
chr1	17292579	.	G	.	.	LowGQX	END=17292583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292584	.	C	.	.	LowGQX	END=17292585	GT	./.
chr1	17292586	.	G	.	.	LowGQX	END=17292591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292592	.	G	.	.	LowGQX	END=17292593	GT	./.
chr1	17292594	.	C	.	.	LowGQX	END=17292595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292596	.	G	.	.	LowGQX	END=17292597	GT	./.
chr1	17292598	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292599	.	G	.	.	LowGQX	.	GT	./.
chr1	17292600	.	C	.	.	LowGQX	END=17292601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292602	.	G	.	.	LowGQX	END=17292603	GT	./.
chr1	17292604	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292605	.	A	.	.	LowGQX	.	GT	./.
chr1	17292606	.	G	.	.	LowGQX	END=17292607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292608	.	G	.	.	LowGQX	.	GT	./.
chr1	17292609	.	A	.	.	LowGQX	END=17292610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292611	.	G	.	.	LowGQX	END=17292612	GT	./.
chr1	17292613	.	A	.	.	LowGQX	END=17292615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17292616	.	T	.	.	LowGQX	.	GT	./.
chr1	17292901	.	A	.	.	LowGQX	END=17293068	GT	./.
chr1	17294661	.	A	.	.	LowGQX	END=17294915	GT	./.
chr1	17295517	.	T	.	.	LowGQX	END=17295846	GT	./.
chr1	17296248	.	C	.	.	LowGQX	END=17296249	GT	./.
chr1	17296250	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296251	.	G	.	.	LowGQX	.	GT	./.
chr1	17296252	.	C	.	.	LowGQX	END=17296253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296254	.	A	.	.	LowGQX	.	GT	./.
chr1	17296255	.	G	.	.	LowGQX	END=17296258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296259	.	C	.	.	LowGQX	.	GT	./.
chr1	17296260	.	C	.	.	LowGQX	END=17296263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296264	.	A	.	.	LowGQX	END=17296265	GT	./.
chr1	17296266	.	C	.	.	LowGQX	END=17296268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296269	.	C	.	.	LowGQX	.	GT	./.
chr1	17296270	.	T	.	.	LowGQX	END=17296282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296283	.	C	.	.	LowGQX	.	GT	./.
chr1	17296284	.	G	.	.	LowGQX	END=17296289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296290	.	A	.	.	LowGQX	.	GT	./.
chr1	17296291	.	T	.	.	LowGQX	END=17296296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296297	.	C	.	.	LowGQX	END=17296298	GT	./.
chr1	17296299	.	G	.	.	LowGQX	END=17296301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296302	.	A	.	.	LowGQX	.	GT	./.
chr1	17296303	.	G	.	.	LowGQX	END=17296307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296308	.	T	.	.	LowGQX	END=17296311	GT	./.
chr1	17296312	.	T	.	.	LowGQX	END=17296319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296320	.	G	.	.	LowGQX	END=17296321	GT	./.
chr1	17296322	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296323	.	A	.	.	LowGQX	.	GT	./.
chr1	17296324	.	G	.	.	LowGQX	END=17296329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296330	.	C	.	.	LowGQX	.	GT	./.
chr1	17296331	.	A	.	.	LowGQX	END=17296337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296338	.	T	.	.	LowGQX	.	GT	./.
chr1	17296339	.	G	.	.	LowGQX	END=17296356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296357	.	G	.	.	LowGQX	.	GT	./.
chr1	17296358	.	T	.	.	LowGQX	END=17296361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296362	.	G	.	.	LowGQX	.	GT	./.
chr1	17296363	.	A	.	.	LowGQX	END=17296365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296366	.	C	.	.	LowGQX	.	GT	./.
chr1	17296367	.	G	.	.	LowGQX	END=17296369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296370	.	G	.	.	LowGQX	.	GT	./.
chr1	17296371	.	T	.	.	LowGQX	END=17296374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296375	.	T	.	.	LowGQX	.	GT	./.
chr1	17296376	.	G	.	.	LowGQX	END=17296378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296379	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	17296380	.	T	.	.	LowGQX	END=17296397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17296398	.	A	.	.	LowGQX	END=17296431	GT	./.
chr1	17296746	.	A	.	.	LowGQX	END=17296821	GT	./.
chr1	17296822	.	G	.	.	LowGQX	END=17296950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17297129	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17297130	.	G	.	.	LowGQX	.	GT	./.
chr1	17297131	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17297132	.	T	.	.	LowGQX	.	GT	./.
chr1	17297133	.	G	.	.	LowGQX	END=17297143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17297144	.	A	.	.	LowGQX	.	GT	./.
chr1	17297145	.	G	.	.	LowGQX	END=17297146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17297147	.	T	.	.	LowGQX	.	GT	./.
chr1	17297148	.	T	.	.	LowGQX	END=17297165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17297166	.	A	.	.	LowGQX	END=17297264	GT	./.
chr1	17297938	.	G	.	.	LowGQX	END=17298144	GT	./.
chr1	17298793	.	C	.	.	LowGQX	END=17298948	GT	./.
chr1	17301413	.	C	.	.	LowGQX	END=17301454	GT	./.
chr1	17301455	.	G	.	.	LowGQX	END=17301481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17301482	.	A	.	.	LowGQX	.	GT	./.
chr1	17301483	.	C	.	.	LowGQX	END=17301485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17301486	.	C	.	.	LowGQX	.	GT	./.
chr1	17301487	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17301488	.	C	.	.	LowGQX	END=17301489	GT	./.
chr1	17301490	.	T	.	.	LowGQX	END=17301494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17301495	.	A	.	.	LowGQX	.	GT	./.
chr1	17301496	.	G	.	.	LowGQX	END=17301520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17301751	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17301752	.	T	.	.	LowGQX	.	GT	./.
chr1	17301753	.	G	.	.	LowGQX	END=17301757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17301758	.	T	.	.	LowGQX	.	GT	./.
chr1	17301759	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17301760	.	C	.	.	LowGQX	.	GT	./.
chr1	17301761	.	T	.	.	LowGQX	END=17301764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17301765	.	T	.	.	LowGQX	.	GT	./.
chr1	17301766	.	C	.	.	LowGQX	END=17301779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17301780	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	17301781	.	T	.	.	LowGQX	END=17301783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17301784	.	G	.	.	LowGQX	.	GT	./.
chr1	17301785	.	C	.	.	LowGQX	END=17301803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17301804	.	G	.	.	LowGQX	.	GT	./.
chr1	17301805	.	A	.	.	LowGQX	END=17301837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17301838	.	C	.	.	LowGQX	.	GT	./.
chr1	17301839	.	T	.	.	LowGQX	END=17301850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17302076	.	C	.	.	LowGQX	END=17302231	GT	./.
chr1	17302969	.	T	.	.	LowGQX	END=17303068	GT	./.
chr1	17303197	.	G	.	.	LowGQX	END=17303296	GT	./.
chr1	17303356	.	C	.	.	LowGQX	END=17303455	GT	./.
chr1	17303599	.	C	.	.	LowGQX	END=17303698	GT	./.
chr1	17304701	.	G	.	.	LowGQX	END=17304800	GT	./.
chr1	17312479	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	17312480	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	17312481	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	17312482	.	A	.	.	LowGQX	END=17312484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	17312485	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	17312486	.	T	.	.	LowGQX	END=17312487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	17312488	.	A	.	.	PASS	END=17312491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	17312492	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	17312493	.	A	.	.	PASS	END=17312498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	17312499	.	G	.	.	PASS	END=17312506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	17312507	.	C	.	.	PASS	END=17312519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	17312520	.	C	.	.	PASS	END=17312522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	17312523	.	C	.	.	PASS	END=17312534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	17312535	.	G	.	.	PASS	END=17312541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	17312542	.	G	.	.	PASS	END=17312563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	17312564	.	T	.	.	PASS	END=17312585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	17312586	.	G	.	.	PASS	END=17312593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	17312594	.	A	.	.	PASS	END=17312611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	17312612	.	C	.	.	PASS	END=17312665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	17312666	.	G	.	.	PASS	END=17312742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	17312743	.	C	T	2054.57	PASS	BaseQRankSum=-2.546;DP=193;Dels=0.00;FS=9.351;HRun=0;HaplotypeScore=27.5559;MQ=60;MQ0=0;MQRankSum=-0.072;QD=10.65;ReadPosRankSum=-0.185;SB=-784.59	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:88,99:193:99:2085,0,2302:60:99:0.529
chr1	17312744	.	G	.	.	PASS	END=17312796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	17312797	.	G	.	.	PASS	END=17312850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	17312851	.	G	.	.	PASS	END=17312898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	17312899	.	G	.	.	PASS	END=17312904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	17312907	.	G	.	.	PASS	END=17312933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	17312934	.	G	.	.	PASS	END=17312962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	17312963	.	G	.	.	PASS	END=17313062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	17313063	.	G	.	.	PASS	END=17313092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	17313093	.	G	.	.	PASS	END=17313112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	17313113	.	C	.	.	PASS	END=17313140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:93:60
chr1	17313141	.	A	.	.	PASS	END=17313156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	17313157	.	G	A	440.62	PASS	BaseQRankSum=-0.041;DP=59;Dels=0.00;FS=15.160;HRun=1;HaplotypeScore=10.5733;MQ=60;MQ0=0;MQRankSum=1.196;QD=7.47;ReadPosRankSum=1.163;SB=-74.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,23:59:99:471,0,989:60:99:0.404
chr1	17313158	.	C	.	.	PASS	END=17313172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	17313173	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:68:60
chr1	17313174	.	C	.	.	PASS	END=17313176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	17313177	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:68:60
chr1	17313178	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:99:60
chr1	17313249	.	G	.	69.11	PASS	DP=50;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:18:19:39.11:60:39
chr1	17313250	.	G	.	78.14	PASS	DP=50;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:18:19:48.15:60:48
chr1	17313251	.	G	.	78.15	PASS	DP=50;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:19:19:48.15:60:48
chr1	17313252	.	C	.	78.15	PASS	DP=50;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:19:19:48.15:60:48
chr1	17313253	.	T	.	66.11	PASS	DP=48;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:17:17:36.12:60:36
chr1	17313254	.	C	.	75.13	PASS	DP=50;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:19:19:45.14:60:45
chr1	17313255	.	C	.	75.14	PASS	DP=49;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:17:18:45.15:60:45
chr1	17313256	.	T	.	75.14	PASS	DP=49;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:18:18:45.14:60:45
chr1	17313257	.	C	.	.	PASS	END=17313272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	17313273	.	A	.	.	PASS	END=17313288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	17313289	.	C	.	.	PASS	END=17313304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	17313305	.	G	.	.	PASS	END=17313342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	17313343	.	G	A	1121.41	PASS	BaseQRankSum=0.393;DP=136;Dels=0.00;FS=1.513;HRun=0;HaplotypeScore=32.3330;MQ=60;MQ0=0;MQRankSum=-0.739;QD=8.25;ReadPosRankSum=1.655;SB=-653.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:81,54:136:99:1151,0,1990:60:99:0.400
chr1	17313344	.	G	.	.	PASS	END=17313439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	17313440	.	A	.	.	PASS	END=17313453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	17313454	.	G	A	1570.22	PASS	BaseQRankSum=1.376;DP=94;Dels=0.00;FS=4.407;HRun=0;HaplotypeScore=20.9275;MQ=60;MQ0=0;MQRankSum=0.289;QD=16.70;ReadPosRankSum=-0.432;SB=-661.71	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,58:94:99:1600,0,941:60:99:0.624
chr1	17313455	.	G	.	.	PASS	END=17313466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	17313467	.	T	.	.	PASS	END=17313512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	17313513	.	G	.	.	PASS	END=17313534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	17313535	.	A	.	.	PASS	END=17313587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	17313588	.	C	.	.	PASS	END=17313653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	17313654	.	C	T	2242.49	PASS	BaseQRankSum=1.484;DP=191;Dels=0.00;FS=2.596;HRun=0;HaplotypeScore=26.9277;MQ=60;MQ0=0;MQRankSum=2.376;QD=11.74;ReadPosRankSum=0.774;SB=-1337.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:94,96:191:99:2272,0,2386:60:99:0.505
chr1	17313655	.	A	.	.	PASS	END=17313706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	17313707	.	T	.	.	PASS	END=17313750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	17313751	.	A	.	.	PASS	END=17313765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	17313766	.	T	.	.	PASS	END=17313799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	17313800	.	G	.	.	PASS	END=17313815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	17314582	.	C	.	.	PASS	END=17314601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	17314602	.	G	.	.	PASS	END=17314631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	17314632	.	C	.	.	PASS	END=17314666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	17314667	.	A	.	.	PASS	END=17314701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	17314702	.	C	T	2418.85	PASS	BaseQRankSum=4.729;DP=209;Dels=0.00;FS=0.571;HRun=0;HaplotypeScore=16.2003;MQ=60;MQ0=0;MQRankSum=0.250;QD=11.57;ReadPosRankSum=-0.043;SB=-825.71	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:117,92:209:99:2449,0,2963:60:99:0.440
chr1	17314703	.	G	.	.	PASS	END=17314859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	17314860	.	T	.	.	PASS	END=17314933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	17314934	.	T	.	.	PASS	END=17314941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	17314942	.	G	A	2178.19	PASS	BaseQRankSum=1.878;DP=157;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=21.0432;MQ=60;MQ0=0;MQRankSum=0.116;QD=13.87;ReadPosRankSum=0.459;SB=-545.40	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:68,88:157:99:2208,0,1707:60:99:0.564
chr1	17314943	.	C	.	.	PASS	END=17314964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	17314965	.	A	.	.	PASS	END=17314985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	17314986	.	A	.	.	PASS	END=17314990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	17314991	.	T	.	.	PASS	END=17314997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	17314998	.	T	.	.	PASS	END=17315015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	17315016	.	C	.	.	PASS	END=17315017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:87:60
chr1	17315018	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:36:60
chr1	17315019	.	C	.	.	PASS	END=17315020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	17316135	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:96:60
chr1	17316136	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:69:60
chr1	17316137	.	A	.	.	PASS	END=17316147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	17316148	.	C	.	.	PASS	END=17316164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	17316165	.	C	.	.	PASS	END=17316190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	17316191	.	C	.	.	PASS	END=17316298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	17316299	.	C	.	.	PASS	END=17316316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	17316331	.	A	.	.	PASS	END=17316352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	17316353	.	G	.	.	PASS	END=17316388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	17316389	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:99:60
chr1	17316390	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:66:60
chr1	17316391	.	C	.	.	PASS	END=17316485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	17316486	.	C	.	.	PASS	END=17316490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	17316491	.	T	.	.	PASS	END=17316512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	17316513	.	A	.	.	PASS	END=17316525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	17316526	.	T	.	.	PASS	END=17316536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	17316537	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:29:60
chr1	17316538	.	C	.	.	PASS	END=17316547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	17316548	.	T	.	.	PASS	END=17316549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	17316571	.	A	.	.	PASS	END=17316575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	17316576	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:42:60
chr1	17316577	.	G	.	.	PASS	END=17316580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	17316581	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:48:60
chr1	17316582	.	C	.	.	PASS	END=17316599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	17316600	.	T	.	.	PASS	END=17316606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	17316607	.	C	.	.	PASS	END=17316611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	17316612	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:54:60
chr1	17316613	.	T	.	.	PASS	END=17316619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	17316620	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:57:60
chr1	17316621	.	C	.	.	PASS	END=17316637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	17316638	.	G	.	.	PASS	END=17316680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	17316681	.	G	.	.	PASS	END=17316775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	17316776	.	T	.	.	PASS	END=17316816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	17316817	.	T	.	.	PASS	END=17316833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	17318178	.	G	.	.	PASS	END=17318190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	17318191	.	T	.	.	PASS	END=17318202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	17318203	.	G	.	.	PASS	END=17318205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	17318206	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:63:60
chr1	17318207	.	G	.	.	PASS	END=17318212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	17318213	.	C	.	.	PASS	END=17318219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	17318220	.	C	.	.	PASS	END=17318240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	17318241	.	C	.	.	PASS	END=17318301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	17318302	.	G	.	.	PASS	END=17318404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	17318453	.	A	.	.	PASS	END=17318563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	17318564	.	G	.	.	PASS	END=17318615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	17318616	.	C	.	.	PASS	END=17318653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	17318654	.	G	.	.	PASS	END=17318675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	17318687	.	C	.	.	PASS	END=17318811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	17318812	.	G	.	.	PASS	END=17318878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	17318879	.	C	.	.	PASS	END=17318943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	17318944	.	C	.	.	PASS	END=17319010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	17319011	.	G	A	2225.08	PASS	BaseQRankSum=2.168;DP=212;Dels=0.00;FS=0.539;HRun=0;HaplotypeScore=34.1395;MQ=60;MQ0=0;MQRankSum=-1.098;QD=10.50;ReadPosRankSum=1.117;SB=-1118.90	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:119,90:212:99:2255,0,3029:60:99:0.431
chr1	17319012	.	G	.	.	PASS	END=17319092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	17319093	.	G	.	.	PASS	END=17319104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	17319105	.	C	.	.	PASS	END=17319127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	17320073	.	G	.	.	PASS	END=17320108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	17320109	.	G	.	.	PASS	END=17320218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	17320219	.	G	.	.	PASS	END=17320259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	17320260	.	G	.	.	PASS	END=17320288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	17320289	.	C	.	.	PASS	END=17320308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	17320309	.	C	.	.	PASS	END=17320310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	17320311	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:63:60
chr1	17320312	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:60
chr1	17320313	.	C	.	.	PASS	END=17320323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	17320324	.	T	.	.	PASS	END=17320344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	17320345	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:33:60
chr1	17320346	.	G	.	.	PASS	END=17320348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	17320349	.	T	.	.	PASS	END=17320350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	17320351	.	G	.	.	PASS	END=17320359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	17320360	.	T	.	.	PASS	END=17320363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	17320364	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	17320365	.	C	.	.	PASS	END=17320371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	17320372	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	17320373	.	G	.	.	LowGQX	END=17320374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	17320375	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	17320376	.	G	.	.	LowGQX	END=17320381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	17322354	.	C	.	.	PASS	END=17322358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	17322359	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:30:60
chr1	17322360	.	A	.	.	PASS	END=17322363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	17322364	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:36:60
chr1	17322365	.	C	.	.	PASS	END=17322372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	17322373	.	C	.	.	PASS	END=17322390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	17322391	.	G	.	.	PASS	END=17322393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	17322394	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:65:60
chr1	17322395	.	A	.	.	PASS	END=17322396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	17322397	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:63:60
chr1	17322398	.	G	.	.	PASS	END=17322408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	17322409	.	G	.	.	PASS	END=17322422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	17322423	.	G	.	.	PASS	END=17322440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	17322441	.	C	.	.	PASS	END=17322502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	17322503	.	C	.	.	PASS	END=17322569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	17322570	.	C	.	.	PASS	END=17322666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	17322667	.	G	.	.	PASS	END=17322707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	17322708	.	G	.	.	PASS	END=17322728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	17322729	.	A	C	93.13	LowQD;SB	BaseQRankSum=-3.758;DP=119;Dels=0.02;FS=68.581;HRun=6;HaplotypeScore=79.7084;MQ=60;MQ0=0;MQRankSum=0.336;QD=0.78;ReadPosRankSum=-2.820;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:84,33:117:99:123,0,1560:60:93:0.282
chr1	17322730	.	C	.	.	PASS	END=17322733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	17322734	.	A	C	34.36	LowQD;SB	BaseQRankSum=-4.968;DP=119;Dels=0.00;FS=87.249;HRun=5;HaplotypeScore=73.3072;MQ=60;MQ0=0;MQRankSum=0.283;QD=0.29;ReadPosRankSum=-3.295;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:77,41:119:64.35:64,0,1603:60:34:0.347
chr1	17322735	.	C	.	.	PASS	END=17322773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	17322774	.	C	.	.	PASS	END=17322882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	17322883	.	A	.	.	PASS	END=17322948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	17322949	.	T	.	.	PASS	END=17323010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	17323011	.	C	.	.	PASS	END=17323033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	17323034	.	A	.	.	PASS	END=17323042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	17323464	.	C	.	.	PASS	END=17323488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	17323489	.	C	.	.	PASS	END=17323510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:88:60
chr1	17323511	.	A	.	.	PASS	END=17323535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	17323536	.	G	.	.	PASS	END=17323565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	17323566	.	G	.	.	PASS	END=17323626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	17323627	.	C	.	.	PASS	END=17323655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	17323656	.	C	.	.	PASS	END=17323695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:94:60
chr1	17323696	.	C	.	.	PASS	END=17323706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	17323707	.	C	.	.	PASS	END=17323716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	17323717	.	A	.	.	PASS	END=17323721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	17326435	.	C	.	.	PASS	END=17326452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	17326453	.	G	.	.	PASS	END=17326484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	17326485	.	G	.	.	PASS	END=17326507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	17326508	.	G	.	.	PASS	END=17326537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	17326538	.	C	.	.	PASS	END=17326568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	17326569	.	G	.	.	PASS	END=17326596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	17326597	.	G	.	.	PASS	END=17326682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr1	17326683	.	A	.	.	PASS	END=17326686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	17326687	.	A	.	.	PASS	END=17326688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	17326690	.	C	.	.	PASS	END=17326725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	17326726	.	G	.	.	PASS	END=17326762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	17326763	.	C	.	.	PASS	END=17326812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	17326813	.	G	.	.	PASS	END=17326939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr1	17326940	.	G	.	.	PASS	END=17326964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	17326965	.	T	.	.	PASS	END=17326989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	17326990	.	C	.	.	PASS	END=17327014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	17327015	.	G	.	.	PASS	END=17327036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	17327037	.	A	.	.	PASS	END=17327067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:87:60
chr1	17327068	.	C	.	.	PASS	END=17327080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	17328472	.	G	.	.	PASS	END=17328526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	17328527	.	A	.	.	PASS	END=17328649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	17328740	.	A	.	.	PASS	END=17328867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	17328868	.	G	.	.	PASS	END=17328879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	17328880	.	T	.	144.23	PASS	DP=123;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:93:123:99:60:99
chr1	17328881	.	G	.	.	PASS	END=17328903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	17328904	.	G	.	.	PASS	END=17328919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	17330776	.	A	.	.	PASS	END=17330801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	17330802	.	G	.	.	PASS	END=17330848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	17330849	.	G	.	.	PASS	END=17330912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	17330913	.	G	.	.	PASS	END=17330940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	17330941	.	T	.	.	PASS	END=17330957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	17331136	.	A	.	.	PASS	END=17331173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	17331174	.	T	.	.	PASS	END=17331227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	17331228	.	C	.	.	PASS	END=17331281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	17331282	.	C	.	.	PASS	END=17331331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	17331332	.	A	.	.	PASS	END=17331367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	17331458	.	G	.	.	PASS	END=17331463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	17331464	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:57:60
chr1	17331465	.	A	.	.	PASS	END=17331473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	17331474	.	G	.	.	PASS	END=17331488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	17331489	.	G	.	.	PASS	END=17331593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	17331594	.	C	.	.	PASS	END=17331615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	17331616	.	C	.	.	PASS	END=17331618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	17331818	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:57:60
chr1	17331819	.	C	.	.	PASS	END=17331823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr1	17331824	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:57:60
chr1	17331825	.	C	.	.	PASS	END=17331844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	17331845	.	C	.	.	PASS	END=17331860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	17331861	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:68:60
chr1	17331862	.	C	.	.	PASS	END=17331887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	17331888	.	A	.	.	PASS	END=17331941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:81:60
chr1	17331942	.	C	.	.	PASS	END=17332038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	17332039	.	A	.	.	PASS	END=17332079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	17332080	.	T	.	.	PASS	END=17332102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	17332128	.	C	.	.	PASS	END=17332244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	17332245	.	G	.	.	PASS	END=17332265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	17332266	.	G	.	.	PASS	END=17332308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	17332309	.	C	.	.	PASS	END=17332324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	17338089	.	C	.	.	LowGQX	END=17338090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	17338091	.	A	.	.	LowGQX	END=17338092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	17338093	.	C	.	.	LowGQX	END=17338117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	17338118	.	A	.	.	LowGQX	END=17338135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	17338136	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	17338137	.	C	.	.	LowGQX	END=17338154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	17338155	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	17338156	.	A	.	.	LowGQX	END=17338157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:9:60
chr1	17338158	.	G	.	.	LowGQX	END=17338160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	17338161	.	T	.	42.03	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:12.04:60:12
chr1	17338162	.	G	.	.	LowGQX	END=17338168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	17338169	.	A	.	.	LowGQX	END=17338172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:60
chr1	17338173	.	G	.	.	LowGQX	END=17338212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	17338213	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	17338214	.	C	.	.	LowGQX	END=17338229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	17338230	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	17338231	.	C	.	.	LowGQX	END=17338248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	17338249	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	17338250	.	C	.	.	LowGQX	END=17338272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	17338273	.	C	.	.	LowGQX	END=17338275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	17338276	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	17338277	.	C	.	.	LowGQX	END=17338281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	17338282	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	17338283	.	G	.	.	LowGQX	END=17338293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	17338294	.	T	.	.	LowGQX	END=17338305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	17338306	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17345325	.	A	.	.	PASS	END=17345335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	17345336	.	G	.	.	PASS	END=17345387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	17345388	.	T	.	.	PASS	END=17345395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	17345396	.	C	.	.	PASS	END=17345504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	17349052	.	T	.	.	PASS	END=17349070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	17349071	.	A	.	.	PASS	END=17349072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr1	17349073	.	G	.	.	PASS	END=17349094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	17349095	.	C	.	.	PASS	END=17349101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr1	17349102	.	C	.	.	PASS	END=17349124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	17349125	.	T	.	.	PASS	END=17349143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	17349144	.	G	.	.	PASS	END=17349256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:96:60
chr1	17349257	.	C	.	.	PASS	END=17349276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	17350417	.	T	.	.	PASS	END=17350522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	17350523	.	C	.	.	PASS	END=17350537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	17350538	.	C	.	.	PASS	END=17350563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	17350564	.	C	.	.	PASS	END=17350572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	17350573	.	T	.	.	PASS	END=17350577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	17350578	.	G	.	.	PASS	END=17350589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	17350590	.	G	.	.	PASS	END=17350620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	17354193	.	C	.	.	PASS	END=17354264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	17354265	.	G	.	.	PASS	END=17354311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	17354312	.	T	.	.	PASS	END=17354347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	17354348	.	A	.	.	PASS	END=17354401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:93:60
chr1	17355044	.	C	.	.	PASS	END=17355113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	17355114	.	A	.	.	PASS	END=17355187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	17355188	.	A	.	.	PASS	END=17355221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	17355222	.	C	.	.	PASS	END=17355255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	17355256	.	A	.	.	PASS	END=17355264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	17355265	.	C	.	.	PASS	END=17355272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	17355273	.	G	.	.	PASS	END=17355279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr1	17355280	.	T	.	.	PASS	END=17355282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	17359504	.	C	.	.	PASS	END=17359522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:97:60
chr1	17359523	.	T	.	.	PASS	END=17359555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	17359556	.	T	.	.	PASS	END=17359584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	17359585	.	T	.	.	PASS	END=17359635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	17359636	.	C	.	.	PASS	END=17359664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	17359665	.	T	.	.	PASS	END=17359675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	17359676	.	C	A	1725.26	PASS	DP=57;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=30.27;SB=-894.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,57:57:99:1758,129,0:60:99:1.000
chr1	17359677	.	G	.	.	PASS	END=17359691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	17371205	.	A	.	.	PASS	END=17371280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	17371281	.	G	.	.	PASS	END=17371361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	17371362	.	C	.	.	PASS	END=17371379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	17371380	.	A	.	.	PASS	END=17371431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	17371432	.	A	.	.	PASS	END=17371434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	17380389	.	A	.	.	PASS	END=17380391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	17380392	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:70:60
chr1	17380393	.	A	.	.	PASS	END=17380469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:96:60
chr1	17380470	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:76:60
chr1	17380471	.	G	.	.	PASS	END=17380496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	17380497	.	G	T	1349.12	PASS	DP=52;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=25.94;SB=-844.43	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,52:52:99:1382,102,0:60:99:1.000
chr1	17380498	.	G	.	.	PASS	END=17380518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	17380519	.	G	.	.	PASS	END=17380535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	17380536	.	C	.	.	PASS	END=17380537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	17380538	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:33:60
chr1	17380539	.	C	.	.	PASS	END=17380543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	17380544	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:38:60
chr1	17380545	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:51:60
chr1	17380546	.	C	.	.	PASS	END=17380550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	17380551	.	A	.	.	PASS	END=17380553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	17380554	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:45:60
chr1	17380555	.	C	.	.	PASS	END=17380557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	17380558	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:48:60
chr1	17380559	.	C	.	.	PASS	END=17380565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	17395537	.	G	.	.	LowGQX	END=17395652	GT	./.
chr1	17395653	.	T	.	.	LowGQX	END=17395656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17395657	.	A	.	.	LowGQX	.	GT	./.
chr1	17395658	.	G	.	.	LowGQX	END=17395679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17395680	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	17395681	.	C	.	.	LowGQX	END=17395774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17396581	.	A	.	.	LowGQX	END=17396661	GT	./.
chr1	17396662	.	G	.	.	LowGQX	END=17396712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17396713	.	T	.	.	LowGQX	.	GT	./.
chr1	17397894	.	C	.	.	LowGQX	END=17397993	GT	./.
chr1	17401348	.	C	.	.	LowGQX	END=17401447	GT	./.
chr1	17402172	.	A	.	.	LowGQX	END=17402351	GT	./.
chr1	17405754	.	C	.	.	LowGQX	END=17405850	GT	./.
chr1	17405851	.	G	.	.	LowGQX	END=17405912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17408984	.	T	.	.	LowGQX	END=17409087	GT	./.
chr1	17409088	.	G	.	.	LowGQX	END=17409149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17410219	.	A	.	.	LowGQX	END=17410325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17410326	.	C	.	.	LowGQX	END=17410334	GT	./.
chr1	17411092	.	A	.	.	LowGQX	END=17411199	GT	./.
chr1	17413014	.	A	.	.	LowGQX	END=17413065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	17413066	.	A	.	.	LowGQX	END=17413070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17413071	.	T	.	.	LowGQX	.	GT	./.
chr1	17413072	.	C	.	.	LowGQX	END=17413088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17413089	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	17413090	.	C	.	.	LowGQX	END=17413103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17413104	.	A	.	.	LowGQX	.	GT	./.
chr1	17413105	.	G	.	.	LowGQX	END=17413120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17413121	.	A	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	17413122	.	C	.	.	LowGQX	END=17413137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17413138	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	17413139	.	A	.	.	LowGQX	END=17413196	GT	./.
chr1	17418901	.	A	.	.	LowGQX	END=17419030	GT	./.
chr1	17420060	.	A	.	.	LowGQX	END=17420173	GT	./.
chr1	17420174	.	G	.	.	LowGQX	END=17420181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17422385	.	T	.	.	LowGQX	END=17422425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17422426	.	A	.	.	LowGQX	.	GT	./.
chr1	17422427	.	C	.	.	LowGQX	END=17422484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17429469	.	C	.	.	LowGQX	END=17429568	GT	./.
chr1	17431371	.	A	.	.	LowGQX	END=17431558	GT	./.
chr1	17445771	.	T	.	.	LowGQX	END=17445788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17445789	.	C	.	.	LowGQX	.	GT	./.
chr1	17445790	.	C	.	.	LowGQX	END=17445815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17445816	.	C	.	.	LowGQX	END=17445922	GT	./.
chr1	17531709	.	C	.	.	LowGQX	END=17531808	GT	./.
chr1	17548783	.	A	.	.	LowGQX	END=17548863	GT	./.
chr1	17548864	.	C	.	.	LowGQX	END=17548967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17550103	.	C	.	.	LowGQX	END=17550202	GT	./.
chr1	17550843	.	C	.	.	LowGQX	END=17550857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17550858	.	G	.	.	LowGQX	END=17550864	GT	./.
chr1	17550865	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17550866	.	T	.	.	LowGQX	END=17550867	GT	./.
chr1	17550868	.	C	.	.	LowGQX	END=17550874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17550875	.	G	.	.	LowGQX	.	GT	./.
chr1	17550876	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17550877	.	T	.	.	LowGQX	END=17550878	GT	./.
chr1	17550879	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17550880	.	A	.	.	LowGQX	.	GT	./.
chr1	17550881	.	C	.	.	LowGQX	END=17550885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17550886	.	G	.	.	LowGQX	.	GT	./.
chr1	17550887	.	C	.	.	LowGQX	END=17550900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17550901	.	T	.	.	LowGQX	.	GT	./.
chr1	17550902	.	G	.	.	LowGQX	END=17550906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17550907	.	G	.	.	LowGQX	END=17550908	GT	./.
chr1	17550909	.	A	.	.	LowGQX	END=17550923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17550924	.	G	.	.	LowGQX	.	GT	./.
chr1	17550925	.	T	.	.	LowGQX	END=17550926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17550927	.	A	.	.	LowGQX	.	GT	./.
chr1	17550928	.	G	.	.	LowGQX	END=17550942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17552304	.	A	.	.	LowGQX	END=17552425	GT	./.
chr1	17552526	.	A	.	.	LowGQX	.	GT	./.
chr1	17552527	.	G	.	.	LowGQX	END=17552531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17552532	.	G	.	.	LowGQX	.	GT	./.
chr1	17552533	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17552534	.	A	.	.	LowGQX	.	GT	./.
chr1	17552535	.	G	.	.	LowGQX	END=17552537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17552538	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	17552539	.	A	.	.	LowGQX	END=17552585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17552586	.	C	.	.	LowGQX	.	GT	./.
chr1	17552587	.	A	.	.	LowGQX	END=17552604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17552605	.	A	.	.	LowGQX	.	GT	./.
chr1	17552606	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17552607	.	C	.	.	LowGQX	END=17552608	GT	./.
chr1	17552609	.	T	.	.	LowGQX	END=17552610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17552611	.	C	.	.	LowGQX	.	GT	./.
chr1	17552612	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17552613	.	C	.	.	LowGQX	.	GT	./.
chr1	17552614	.	T	.	.	LowGQX	END=17552637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17552638	.	G	.	.	LowGQX	END=17552639	GT	./.
chr1	17552640	.	C	.	.	LowGQX	END=17552641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17552642	.	T	.	.	LowGQX	.	GT	./.
chr1	17552643	.	C	.	.	LowGQX	END=17552655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17555098	.	C	.	.	LowGQX	END=17555112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17555113	.	T	.	.	LowGQX	END=17555294	GT	./.
chr1	17555385	.	G	.	.	LowGQX	END=17555548	GT	./.
chr1	17556578	.	A	.	.	LowGQX	END=17556676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17556677	.	G	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr1	17556678	.	A	.	.	LowGQX	END=17556705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	17557065	.	A	.	.	LowGQX	END=17557202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17557203	.	C	.	.	LowGQX	END=17557224	GT	./.
chr1	17559312	.	A	.	.	LowGQX	END=17559421	GT	./.
chr1	17559422	.	G	.	.	LowGQX	END=17559467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17563807	.	A	.	.	LowGQX	END=17563955	GT	./.
chr1	17565108	.	C	.	.	LowGQX	END=17565207	GT	./.
chr1	17566189	.	C	.	.	LowGQX	END=17566257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17566258	.	A	.	.	LowGQX	.	GT	./.
chr1	17566259	.	G	.	.	LowGQX	END=17566288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17567128	.	A	.	.	LowGQX	END=17567257	GT	./.
chr1	17570503	.	A	.	.	LowGQX	END=17570531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570532	.	C	.	.	LowGQX	END=17570545	GT	./.
chr1	17570546	.	G	.	.	LowGQX	END=17570547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570548	.	C	.	.	LowGQX	.	GT	./.
chr1	17570549	.	C	.	.	LowGQX	END=17570555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570556	.	C	.	.	LowGQX	.	GT	./.
chr1	17570557	.	C	.	.	LowGQX	END=17570564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570565	.	A	.	.	LowGQX	END=17570566	GT	./.
chr1	17570567	.	T	.	.	LowGQX	END=17570570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570571	.	C	.	.	LowGQX	.	GT	./.
chr1	17570572	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570573	.	C	.	.	LowGQX	END=17570574	GT	./.
chr1	17570575	.	G	.	.	LowGQX	END=17570583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570584	.	A	.	.	LowGQX	.	GT	./.
chr1	17570585	.	G	.	.	LowGQX	END=17570588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570589	.	A	.	.	LowGQX	.	GT	./.
chr1	17570590	.	A	.	.	LowGQX	END=17570592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570593	.	T	.	.	LowGQX	.	GT	./.
chr1	17570594	.	G	.	.	LowGQX	END=17570596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570597	.	G	.	.	LowGQX	END=17570600	GT	./.
chr1	17570601	.	C	.	.	LowGQX	END=17570604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570605	.	T	.	.	LowGQX	.	GT	./.
chr1	17570606	.	G	.	.	LowGQX	END=17570607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570608	.	A	.	.	LowGQX	.	GT	./.
chr1	17570609	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570610	.	C	.	.	LowGQX	.	GT	./.
chr1	17570611	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570612	.	T	.	.	LowGQX	END=17570614	GT	./.
chr1	17570615	.	G	.	.	LowGQX	END=17570618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570619	.	C	.	.	LowGQX	END=17570620	GT	./.
chr1	17570621	.	G	.	.	LowGQX	END=17570624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570625	.	T	.	.	LowGQX	END=17570630	GT	./.
chr1	17570631	.	T	.	.	LowGQX	END=17570633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570634	.	A	.	.	LowGQX	.	GT	./.
chr1	17570635	.	T	.	.	LowGQX	END=17570638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570639	.	T	.	.	LowGQX	END=17570644	GT	./.
chr1	17570645	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570646	.	T	.	.	LowGQX	END=17570647	GT	./.
chr1	17570648	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570649	.	T	.	.	LowGQX	.	GT	./.
chr1	17570650	.	C	.	.	LowGQX	END=17570651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570652	.	T	.	.	LowGQX	END=17570663	GT	./.
chr1	17570664	.	C	.	.	LowGQX	END=17570665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570666	.	G	.	.	LowGQX	END=17570667	GT	./.
chr1	17570668	.	G	.	.	LowGQX	END=17570669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570670	.	G	.	.	LowGQX	.	GT	./.
chr1	17570671	.	A	.	.	LowGQX	END=17570672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570673	.	A	.	.	LowGQX	.	GT	./.
chr1	17570674	.	T	.	.	LowGQX	END=17570676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570677	.	A	.	.	LowGQX	END=17570679	GT	./.
chr1	17570680	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570681	.	T	.	.	LowGQX	.	GT	./.
chr1	17570682	.	G	.	.	LowGQX	END=17570684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570685	.	A	.	.	LowGQX	END=17570686	GT	./.
chr1	17570687	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570688	.	A	.	.	LowGQX	END=17570689	GT	./.
chr1	17570690	.	C	.	.	LowGQX	END=17570691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570692	.	T	.	.	LowGQX	END=17570693	GT	./.
chr1	17570694	.	C	.	.	LowGQX	END=17570695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570696	.	C	.	.	LowGQX	END=17570878	GT	./.
chr1	17570879	.	A	.	.	LowGQX	END=17570887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570888	.	T	.	.	LowGQX	.	GT	./.
chr1	17570889	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570890	.	G	.	.	LowGQX	.	GT	./.
chr1	17570891	.	A	.	.	LowGQX	END=17570892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570893	.	A	.	.	LowGQX	.	GT	./.
chr1	17570894	.	C	.	.	LowGQX	END=17570896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570897	.	C	.	.	LowGQX	.	GT	./.
chr1	17570898	.	C	.	.	LowGQX	END=17570938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17570939	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	17570940	.	G	.	.	LowGQX	END=17571006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	17575629	.	C	.	.	LowGQX	END=17575728	GT	./.
chr1	17586071	.	A	.	.	LowGQX	.	GT	./.
chr1	17586072	.	G	.	.	LowGQX	END=17586080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17586081	.	C	.	.	LowGQX	.	GT	./.
chr1	17586082	.	T	.	.	LowGQX	END=17586255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17588556	.	C	.	.	LowGQX	END=17588714	GT	./.
chr1	17592135	.	C	.	.	LowGQX	END=17592234	GT	./.
chr1	17593212	.	A	.	.	LowGQX	END=17593315	GT	./.
chr1	17593316	.	G	.	.	LowGQX	END=17593333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17594330	.	A	.	.	LowGQX	END=17594391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17594392	.	A	.	.	LowGQX	END=17594459	GT	./.
chr1	17596726	.	A	.	.	LowGQX	END=17596805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17596806	.	G	.	.	LowGQX	END=17596870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	17596871	.	T	.	.	LowGQX	END=17596908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17597372	.	A	.	.	LowGQX	END=17597479	GT	./.
chr1	17597560	.	A	.	.	LowGQX	END=17597582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17597583	.	T	.	.	LowGQX	.	GT	./.
chr1	17597584	.	G	.	.	LowGQX	END=17597639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17597640	.	A	.	.	LowGQX	END=17597642	GT	./.
chr1	17597643	.	G	.	.	LowGQX	END=17597649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17597650	.	A	.	.	LowGQX	END=17597651	GT	./.
chr1	17597652	.	C	.	.	LowGQX	END=17597658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17597659	.	G	.	.	LowGQX	END=17597660	GT	./.
chr1	17597661	.	C	.	.	LowGQX	END=17597673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17597674	.	G	.	.	LowGQX	.	GT	./.
chr1	17597675	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17599833	.	A	.	.	LowGQX	END=17599944	GT	./.
chr1	17601128	.	A	.	.	LowGQX	END=17601164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17601165	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	17601166	.	G	.	.	LowGQX	END=17601179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17601180	.	T	.	.	LowGQX	END=17601283	GT	./.
chr1	17602942	.	A	.	.	LowGQX	END=17603160	GT	./.
chr1	17603217	.	A	.	.	LowGQX	END=17603269	GT	./.
chr1	17603270	.	G	.	.	LowGQX	END=17603331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17603332	.	T	.	.	LowGQX	.	GT	./.
chr1	17603333	.	G	.	.	LowGQX	END=17603373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17606835	.	T	.	.	LowGQX	END=17606934	GT	./.
chr1	17607164	.	A	.	.	LowGQX	END=17607218	GT	./.
chr1	17607219	.	G	.	.	LowGQX	END=17607234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17607235	.	A	.	.	LowGQX	.	GT	./.
chr1	17607236	.	T	.	.	LowGQX	END=17607293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17609339	.	A	.	.	LowGQX	END=17609407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17609408	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	17609409	.	C	.	.	LowGQX	END=17609428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17609429	.	T	.	.	LowGQX	END=17609576	GT	./.
chr1	17634714	.	G	.	.	LowGQX	END=17634813	GT	./.
chr1	17657462	.	A	.	.	LowGQX	END=17657661	GT	./.
chr1	17660422	.	A	.	.	LowGQX	END=17660521	GT	./.
chr1	17660793	.	T	.	.	LowGQX	END=17661173	GT	./.
chr1	17662638	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	17662639	.	T	C	135.68	LowGQ;LowGQX	DP=6;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=22.61;SB=-114.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,6:6:12.04:168,12,0:60:12:1.000
chr1	17662640	.	T	.	.	LowGQX	END=17662661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	17662662	.	T	C	141.12	LowGQ;LowGQX	DP=7;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=20.16;SB=-103.82	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,7:7:12.04:174,12,0:60:12:1.000
chr1	17662663	.	T	.	.	LowGQX	END=17662737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	17664531	.	A	.	.	LowGQX	END=17664652	GT	./.
chr1	17666181	.	A	.	.	LowGQX	END=17666228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17666229	.	G	.	.	LowGQX	.	GT	./.
chr1	17666230	.	G	.	.	LowGQX	END=17666233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17666234	.	T	.	.	LowGQX	.	GT	./.
chr1	17666235	.	C	.	.	LowGQX	END=17666251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17666252	.	T	.	.	LowGQX	END=17666310	GT	./.
chr1	17668436	.	A	.	.	LowGQX	END=17668618	GT	./.
chr1	17668792	.	A	.	.	LowGQX	END=17668797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17668798	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	17668799	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	17668800	.	C	.	.	LowGQX	END=17668823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17668824	.	A	.	.	LowGQX	END=17668899	GT	./.
chr1	17672521	.	A	.	.	LowGQX	END=17672636	GT	./.
chr1	17674434	.	A	.	.	LowGQX	END=17674503	GT	./.
chr1	17674504	.	G	.	.	LowGQX	END=17674612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17680996	.	C	.	.	LowGQX	END=17681184	GT	./.
chr1	17682436	.	G	.	.	LowGQX	END=17682624	GT	./.
chr1	17682850	.	A	.	.	LowGQX	END=17682956	GT	./.
chr1	17685261	.	C	.	.	LowGQX	END=17685416	GT	./.
chr1	17685417	.	T	.	.	LowGQX	END=17685418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17685773	.	A	.	.	LowGQX	END=17685774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17685775	.	A	.	.	LowGQX	END=17685905	GT	./.
chr1	17690015	.	A	.	.	LowGQX	.	GT	./.
chr1	17690016	.	G	.	.	LowGQX	END=17690018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17690019	.	G	.	.	LowGQX	.	GT	./.
chr1	17690020	.	A	.	.	LowGQX	END=17690038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17690039	.	A	.	.	LowGQX	.	GT	./.
chr1	17690040	.	G	.	.	LowGQX	END=17690042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17690043	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	17690044	.	C	.	.	LowGQX	END=17690055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17690056	.	A	.	.	LowGQX	END=17690057	GT	./.
chr1	17690058	.	G	.	.	LowGQX	END=17690059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17690060	.	C	.	.	LowGQX	END=17690062	GT	./.
chr1	17690063	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17690064	.	C	.	.	LowGQX	.	GT	./.
chr1	17690065	.	G	.	.	LowGQX	END=17690069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17690070	.	C	.	.	LowGQX	.	GT	./.
chr1	17690071	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17690072	.	T	.	.	LowGQX	.	GT	./.
chr1	17690073	.	C	.	.	LowGQX	END=17690077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17690078	.	A	.	.	LowGQX	.	GT	./.
chr1	17690079	.	C	.	.	LowGQX	END=17690092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17690093	.	T	.	.	LowGQX	END=17690094	GT	./.
chr1	17690095	.	G	.	.	LowGQX	END=17690104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17690105	.	T	.	.	LowGQX	.	GT	./.
chr1	17690106	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17690107	.	T	.	.	LowGQX	.	GT	./.
chr1	17690108	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17690109	.	T	.	.	LowGQX	END=17690110	GT	./.
chr1	17690111	.	C	.	.	LowGQX	END=17690116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17690117	.	T	.	.	LowGQX	.	GT	./.
chr1	17690118	.	G	.	.	LowGQX	END=17690120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17690121	.	G	.	.	LowGQX	.	GT	./.
chr1	17690122	.	C	.	.	LowGQX	END=17690138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17690139	.	C	.	.	LowGQX	.	GT	./.
chr1	17690140	.	A	.	.	LowGQX	END=17690143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17690144	.	T	.	.	LowGQX	.	GT	./.
chr1	17690145	.	C	.	.	LowGQX	END=17690146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17690147	.	T	.	.	LowGQX	.	GT	./.
chr1	17690148	.	C	.	.	LowGQX	END=17690166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17690167	.	C	.	.	LowGQX	.	GT	./.
chr1	17690168	.	A	.	.	LowGQX	END=17690169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17690170	.	A	.	.	LowGQX	END=17690252	GT	./.
chr1	17698740	.	G	.	.	LowGQX	END=17698856	GT	./.
chr1	17699550	.	G	.	.	LowGQX	END=17699728	GT	./.
chr1	17701908	.	T	.	.	LowGQX	END=17701912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17701913	.	T	.	.	LowGQX	.	GT	./.
chr1	17701914	.	C	.	.	LowGQX	END=17701922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17701923	.	T	.	.	LowGQX	.	GT	./.
chr1	17701924	.	C	.	.	LowGQX	END=17701926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17701927	.	G	.	.	LowGQX	.	GT	./.
chr1	17701928	.	G	.	.	LowGQX	END=17701938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17701939	.	T	.	.	LowGQX	.	GT	./.
chr1	17701940	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17701941	.	G	.	.	LowGQX	END=17702007	GT	./.
chr1	17706399	.	T	.	.	LowGQX	END=17706498	GT	./.
chr1	17707541	.	G	.	.	LowGQX	END=17707659	GT	./.
chr1	17708411	.	A	.	.	LowGQX	END=17708413	GT	./.
chr1	17708414	.	G	.	.	LowGQX	END=17708587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17714875	.	G	.	.	LowGQX	END=17714902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17714903	.	T	.	.	LowGQX	.	GT	./.
chr1	17714904	.	G	.	.	LowGQX	END=17714948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17714949	.	C	.	.	LowGQX	END=17715053	GT	./.
chr1	17715054	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17715271	.	G	.	.	LowGQX	END=17715294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17715295	.	C	.	.	LowGQX	.	GT	./.
chr1	17715296	.	A	.	.	LowGQX	END=17715313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17715314	.	C	.	.	LowGQX	.	GT	./.
chr1	17715315	.	G	.	.	LowGQX	END=17715320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17715321	.	C	.	.	LowGQX	END=17715375	GT	./.
chr1	17718608	.	G	.	.	LowGQX	END=17718721	GT	./.
chr1	17720470	.	G	.	.	LowGQX	END=17720515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17720516	.	T	.	.	LowGQX	.	GT	./.
chr1	17720517	.	C	.	.	LowGQX	END=17720529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17720530	.	C	.	.	LowGQX	.	GT	./.
chr1	17720531	.	A	.	.	LowGQX	END=17720578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17720795	.	G	.	.	LowGQX	END=17720950	GT	./.
chr1	17721446	.	G	.	.	LowGQX	END=17721603	GT	./.
chr1	17722035	.	G	.	.	LowGQX	END=17722159	GT	./.
chr1	17723552	.	C	.	.	LowGQX	END=17723651	GT	./.
chr1	17725181	.	G	.	.	LowGQX	END=17725343	GT	./.
chr1	17727700	.	G	.	.	LowGQX	END=17727934	GT	./.
chr1	17735584	.	C	.	.	LowGQX	END=17735686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17735687	.	C	.	.	LowGQX	END=17735692	GT	./.
chr1	17736459	.	C	.	.	LowGQX	END=17736473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17736474	.	T	.	.	LowGQX	.	GT	./.
chr1	17736475	.	C	.	.	LowGQX	END=17736558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17738546	.	G	.	.	LowGQX	END=17738704	GT	./.
chr1	17739567	.	A	.	.	LowGQX	END=17739676	GT	./.
chr1	17740011	.	C	.	.	LowGQX	END=17740215	GT	./.
chr1	17742974	.	A	.	.	LowGQX	END=17743144	GT	./.
chr1	17747208	.	A	.	.	LowGQX	END=17747326	GT	./.
chr1	17748694	.	G	.	.	LowGQX	END=17748718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17748719	.	C	.	.	LowGQX	END=17748793	GT	./.
chr1	17749199	.	A	.	.	LowGQX	END=17749200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17749201	.	C	.	.	LowGQX	END=17749378	GT	./.
chr1	17752035	.	A	.	.	LowGQX	END=17752182	GT	./.
chr1	17755599	.	T	.	.	LowGQX	END=17755698	GT	./.
chr1	17764713	.	G	.	.	LowGQX	END=17765012	GT	./.
chr1	17907060	.	G	.	.	LowGQX	END=17907159	GT	./.
chr1	17913953	.	A	.	.	LowGQX	END=17914142	GT	./.
chr1	17914908	.	C	.	.	LowGQX	END=17915007	GT	./.
chr1	17928618	.	G	.	.	LowGQX	END=17928768	GT	./.
chr1	17929995	.	C	.	.	LowGQX	END=17930094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17934284	.	G	.	.	LowGQX	END=17934291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17934292	.	A	.	.	LowGQX	.	GT	./.
chr1	17934293	.	G	.	.	LowGQX	END=17934294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17934295	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	17934296	.	G	.	.	LowGQX	END=17934300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17934301	.	A	.	.	LowGQX	END=17934302	GT	./.
chr1	17934303	.	A	.	.	LowGQX	END=17934304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17934305	.	A	.	.	LowGQX	.	GT	./.
chr1	17934306	.	G	.	.	LowGQX	END=17934307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	17934308	.	A	.	2.30	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0:60:0
chr1	17934309	.	A	.	.	LowGQX	.	GT	./.
chr1	17934310	.	C	.	.	LowGQX	END=17934311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	17934312	.	T	.	.	LowGQX	.	GT	./.
chr1	17934313	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	17934314	.	C	.	.	LowGQX	.	GT	./.
chr1	17934315	.	T	.	.	LowGQX	END=17934329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17934330	.	A	.	.	LowGQX	.	GT	./.
chr1	17934331	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17934332	.	C	.	.	LowGQX	END=17934333	GT	./.
chr1	17934334	.	G	.	.	LowGQX	END=17934338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17934339	.	G	.	.	LowGQX	.	GT	./.
chr1	17934340	.	G	.	.	LowGQX	END=17934351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17934352	.	G	.	.	LowGQX	.	GT	./.
chr1	17934353	.	G	.	.	LowGQX	END=17934354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17934355	.	G	.	.	LowGQX	.	GT	./.
chr1	17934356	.	G	.	.	LowGQX	END=17934359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17934360	.	A	.	.	LowGQX	.	GT	./.
chr1	17934361	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17934362	.	C	.	.	LowGQX	END=17934386	GT	./.
chr1	17934387	.	A	.	.	LowGQX	END=17934411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17934412	.	G	.	.	LowGQX	.	GT	./.
chr1	17934413	.	G	.	.	LowGQX	END=17934414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17934415	.	G	.	.	LowGQX	.	GT	./.
chr1	17934416	.	G	.	.	LowGQX	END=17934434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17934435	.	T	.	.	LowGQX	.	GT	./.
chr1	17934436	.	C	.	.	LowGQX	END=17934437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17934438	.	A	.	.	LowGQX	.	GT	./.
chr1	17934439	.	G	.	.	LowGQX	END=17934446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17934447	.	A	.	.	LowGQX	.	GT	./.
chr1	17934448	.	G	.	.	LowGQX	END=17934457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17934458	.	T	.	.	LowGQX	.	GT	./.
chr1	17934459	.	C	.	.	LowGQX	END=17934473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17934474	.	T	.	.	LowGQX	.	GT	./.
chr1	17934475	.	G	.	.	LowGQX	END=17934478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17934479	.	G	.	.	LowGQX	.	GT	./.
chr1	17934480	.	G	.	.	LowGQX	END=17934483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17934484	.	G	.	.	LowGQX	.	GT	./.
chr1	17934485	.	G	.	.	LowGQX	END=17934494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17939551	.	A	.	.	LowGQX	END=17939670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17939671	.	T	.	.	LowGQX	.	GT	./.
chr1	17942565	.	A	.	.	LowGQX	END=17942571	GT	./.
chr1	17942572	.	T	.	.	LowGQX	END=17942592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17942593	.	C	.	.	LowGQX	.	GT	./.
chr1	17942594	.	C	.	.	LowGQX	END=17942595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17942596	.	A	.	.	LowGQX	.	GT	./.
chr1	17942597	.	G	.	.	LowGQX	END=17942613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17942614	.	A	.	.	LowGQX	.	GT	./.
chr1	17942615	.	G	.	.	LowGQX	END=17942644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17942645	.	A	.	.	LowGQX	.	GT	./.
chr1	17942646	.	C	.	.	LowGQX	END=17942651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17942652	.	G	.	.	LowGQX	.	GT	./.
chr1	17942653	.	C	.	.	LowGQX	END=17942671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17942672	.	C	.	.	LowGQX	.	GT	./.
chr1	17942673	.	T	.	.	LowGQX	END=17942677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17942678	.	G	.	.	LowGQX	.	GT	./.
chr1	17942679	.	C	.	.	LowGQX	END=17942688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17942689	.	A	.	.	LowGQX	.	GT	./.
chr1	17942690	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17942691	.	G	.	.	LowGQX	.	GT	./.
chr1	17942692	.	T	.	.	LowGQX	END=17942699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17944827	.	G	.	.	LowGQX	END=17944839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	17944840	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	17944841	.	G	.	.	LowGQX	END=17944879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17944880	.	A	.	.	LowGQX	.	GT	./.
chr1	17944881	.	G	.	.	LowGQX	END=17944882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17944883	.	T	.	.	LowGQX	.	GT	./.
chr1	17944884	.	G	.	.	LowGQX	END=17944894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17944895	.	T	.	.	LowGQX	.	GT	./.
chr1	17944896	.	G	.	.	LowGQX	END=17944903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17944904	.	T	.	.	LowGQX	.	GT	./.
chr1	17944905	.	G	.	.	LowGQX	END=17944924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17944925	.	T	.	.	LowGQX	.	GT	./.
chr1	17944926	.	G	.	.	LowGQX	END=17944946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17944947	.	T	.	.	LowGQX	.	GT	./.
chr1	17944948	.	C	.	.	LowGQX	END=17944950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17944951	.	C	.	.	LowGQX	.	GT	./.
chr1	17944952	.	A	.	.	LowGQX	END=17944953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17944954	.	C	.	.	LowGQX	END=17945017	GT	./.
chr1	17945782	.	A	.	.	LowGQX	END=17945790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17945791	.	T	.	.	LowGQX	.	GT	./.
chr1	17945792	.	G	.	.	LowGQX	END=17945817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17945818	.	C	.	.	LowGQX	.	GT	./.
chr1	17945819	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17945820	.	A	.	.	LowGQX	END=17945821	GT	./.
chr1	17945822	.	C	.	.	LowGQX	END=17945824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17945825	.	A	.	.	LowGQX	.	GT	./.
chr1	17945826	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17945827	.	T	.	.	LowGQX	.	GT	./.
chr1	17945828	.	T	.	.	LowGQX	END=17945838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17945839	.	T	.	.	LowGQX	END=17945896	GT	./.
chr1	17945897	.	C	.	.	LowGQX	END=17945941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17945942	.	T	.	.	LowGQX	.	GT	./.
chr1	17948348	.	G	.	.	LowGQX	END=17948447	GT	./.
chr1	17949489	.	A	.	.	LowGQX	END=17949672	GT	./.
chr1	17950880	.	A	.	.	LowGQX	END=17950897	GT	./.
chr1	17950898	.	T	.	.	LowGQX	END=17951000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17952448	.	C	.	.	LowGQX	END=17952452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	17952453	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	17952454	.	C	.	.	LowGQX	END=17952466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	17952467	.	G	.	.	LowGQX	END=17952480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	17952481	.	A	.	.	LowGQX	END=17952484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	17952485	.	T	.	.	LowGQX	END=17952500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	17952501	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	17952502	.	A	.	.	LowGQX	END=17952507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	17952508	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	17952509	.	T	.	.	LowGQX	END=17952513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	17952514	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	17952515	.	G	.	.	LowGQX	END=17952521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	17952522	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	17952523	.	C	.	.	LowGQX	END=17952528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	17952529	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	17952530	.	T	.	.	LowGQX	END=17952538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	17952539	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	17952540	.	T	.	.	LowGQX	END=17952547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	17953823	.	A	.	.	LowGQX	END=17954000	GT	./.
chr1	17958814	.	A	.	.	LowGQX	END=17958868	GT	./.
chr1	17958869	.	C	.	.	LowGQX	END=17958876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17958877	.	G	.	.	LowGQX	.	GT	./.
chr1	17958878	.	T	.	.	LowGQX	END=17958963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17960941	.	C	.	.	LowGQX	END=17961046	GT	./.
chr1	17961047	.	G	.	.	LowGQX	END=17961053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17961054	.	A	.	.	LowGQX	.	GT	./.
chr1	17961055	.	C	.	.	LowGQX	END=17961061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17961062	.	G	.	.	LowGQX	END=17961063	GT	./.
chr1	17961064	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17961065	.	G	.	.	LowGQX	.	GT	./.
chr1	17961066	.	T	.	.	LowGQX	END=17961068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17961069	.	A	.	.	LowGQX	END=17961071	GT	./.
chr1	17961072	.	G	.	.	LowGQX	END=17961078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17961079	.	G	.	.	LowGQX	.	GT	./.
chr1	17961080	.	G	.	.	LowGQX	END=17961084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17961085	.	C	.	.	LowGQX	.	GT	./.
chr1	17961086	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17961087	.	G	.	.	LowGQX	.	GT	./.
chr1	17961088	.	G	.	.	LowGQX	END=17961089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17961090	.	G	.	.	LowGQX	END=17961092	GT	./.
chr1	17961093	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17961094	.	T	.	.	LowGQX	.	GT	./.
chr1	17961095	.	G	.	.	LowGQX	END=17961099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17961100	.	T	.	.	LowGQX	.	GT	./.
chr1	17961328	.	A	.	.	LowGQX	END=17961412	GT	./.
chr1	17961413	.	T	.	.	LowGQX	END=17961474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17961475	.	G	.	.	LowGQX	END=17961486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	17961487	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	17961488	.	C	.	.	LowGQX	END=17961505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	17961506	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:60
chr1	17961507	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	17961508	.	C	.	.	LowGQX	END=17961515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	17961516	.	G	.	.	LowGQX	END=17961517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	17961518	.	A	.	.	LowGQX	END=17961527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	17964381	.	A	.	.	LowGQX	END=17964395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17964396	.	C	.	.	LowGQX	.	GT	./.
chr1	17964397	.	G	.	.	LowGQX	END=17964471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17964472	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	17964473	.	T	.	.	LowGQX	END=17964500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	17965055	.	A	.	.	LowGQX	END=17965186	GT	./.
chr1	17966288	.	C	.	.	LowGQX	END=17966387	GT	./.
chr1	17966695	.	A	.	.	LowGQX	END=17966799	GT	./.
chr1	17975047	.	A	.	.	LowGQX	END=17975055	GT	./.
chr1	17975056	.	G	.	.	LowGQX	END=17975071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17975072	.	C	.	.	LowGQX	.	GT	./.
chr1	17975073	.	T	.	.	LowGQX	END=17975081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17975082	.	A	.	.	LowGQX	.	GT	./.
chr1	17975083	.	T	.	.	LowGQX	END=17975087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17975088	.	A	.	.	LowGQX	.	GT	./.
chr1	17975089	.	C	.	.	LowGQX	END=17975103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17975104	.	C	.	.	LowGQX	.	GT	./.
chr1	17975105	.	C	.	.	LowGQX	END=17975106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17975107	.	A	.	.	LowGQX	.	GT	./.
chr1	17975108	.	T	.	.	LowGQX	END=17975133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17975134	.	C	.	.	LowGQX	.	GT	./.
chr1	17975135	.	A	.	.	LowGQX	END=17975141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17975142	.	C	.	.	LowGQX	END=17975143	GT	./.
chr1	17975144	.	T	.	.	LowGQX	END=17975145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17975146	.	C	.	.	LowGQX	.	GT	./.
chr1	17975147	.	T	.	.	LowGQX	END=17975153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17975154	.	G	.	.	LowGQX	.	GT	./.
chr1	17975155	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17975156	.	G	.	.	LowGQX	.	GT	./.
chr1	17975157	.	C	.	.	LowGQX	END=17975158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17975159	.	C	.	.	LowGQX	.	GT	./.
chr1	17975160	.	T	.	.	LowGQX	END=17975166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17975167	.	G	.	.	LowGQX	END=17975168	GT	./.
chr1	17975169	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17975170	.	G	.	.	LowGQX	.	GT	./.
chr1	17975171	.	G	.	.	LowGQX	END=17975172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17981125	.	C	.	.	LowGQX	END=17981213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17981214	.	C	.	.	LowGQX	END=17981224	GT	./.
chr1	17982372	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982373	.	G	.	.	LowGQX	.	GT	./.
chr1	17982374	.	G	.	.	LowGQX	END=17982377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982378	.	G	.	.	LowGQX	.	GT	./.
chr1	17982379	.	G	.	.	LowGQX	END=17982387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982388	.	G	.	.	LowGQX	.	GT	./.
chr1	17982389	.	G	.	.	LowGQX	END=17982392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982393	.	G	.	.	LowGQX	END=17982394	GT	./.
chr1	17982395	.	G	.	.	LowGQX	END=17982399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982400	.	G	.	.	LowGQX	.	GT	./.
chr1	17982401	.	G	.	.	LowGQX	END=17982409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982410	.	G	.	.	LowGQX	.	GT	./.
chr1	17982411	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982412	.	A	.	.	LowGQX	.	GT	./.
chr1	17982413	.	A	.	.	LowGQX	END=17982415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982416	.	T	.	.	LowGQX	.	GT	./.
chr1	17982417	.	T	.	.	LowGQX	END=17982419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982420	.	C	.	.	LowGQX	.	GT	./.
chr1	17982421	.	C	.	.	LowGQX	END=17982425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982426	.	A	.	.	LowGQX	.	GT	./.
chr1	17982427	.	C	.	.	LowGQX	END=17982436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982437	.	C	.	.	LowGQX	.	GT	./.
chr1	17982438	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982439	.	C	.	.	LowGQX	END=17982440	GT	./.
chr1	17982441	.	G	.	.	LowGQX	END=17982444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982445	.	C	.	.	LowGQX	.	GT	./.
chr1	17982446	.	G	.	.	LowGQX	END=17982447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982448	.	C	.	.	LowGQX	.	GT	./.
chr1	17982449	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982450	.	A	.	.	LowGQX	END=17982451	GT	./.
chr1	17982452	.	T	.	.	LowGQX	END=17982458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982459	.	C	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	17982460	.	A	.	.	LowGQX	.	GT	./.
chr1	17982461	.	C	.	.	LowGQX	END=17982462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982463	.	G	.	.	LowGQX	END=17982464	GT	./.
chr1	17982465	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982466	.	A	.	.	LowGQX	.	GT	./.
chr1	17982467	.	G	.	.	LowGQX	END=17982468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982469	.	C	.	.	LowGQX	.	GT	./.
chr1	17982470	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982471	.	C	.	.	LowGQX	END=17982484	GT	./.
chr1	17982485	.	G	.	.	LowGQX	END=17982582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17982583	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	17982584	.	C	.	.	LowGQX	END=17982595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	17982596	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	17982597	.	G	.	.	LowGQX	END=17982598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	17982599	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	17983047	.	A	.	.	LowGQX	END=17983205	GT	./.
chr1	17990910	.	G	.	.	LowGQX	END=17990918	GT	./.
chr1	17990919	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17990920	.	T	.	.	LowGQX	.	GT	./.
chr1	17990921	.	G	.	.	LowGQX	END=17990923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17990924	.	T	.	.	LowGQX	.	GT	./.
chr1	17990925	.	C	.	.	LowGQX	END=17990927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17990928	.	C	.	.	LowGQX	END=17990929	GT	./.
chr1	17990930	.	C	.	.	LowGQX	END=17990936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17990937	.	T	.	.	LowGQX	.	GT	./.
chr1	17990938	.	G	.	.	LowGQX	END=17990944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17990945	.	G	.	.	LowGQX	.	GT	./.
chr1	17990946	.	T	.	.	LowGQX	END=17990947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17990948	.	T	.	.	LowGQX	END=17990950	GT	./.
chr1	17990951	.	T	.	.	LowGQX	END=17990952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17990953	.	T	.	.	LowGQX	.	GT	./.
chr1	17990954	.	G	.	.	LowGQX	END=17990959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17990960	.	T	.	.	LowGQX	.	GT	./.
chr1	17990961	.	G	.	.	LowGQX	END=17990969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17990970	.	T	.	.	LowGQX	.	GT	./.
chr1	17990971	.	C	.	.	LowGQX	END=17990974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17990975	.	T	.	.	LowGQX	.	GT	./.
chr1	17990976	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17990977	.	T	.	.	LowGQX	.	GT	./.
chr1	17990978	.	G	.	.	LowGQX	END=17990983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17990984	.	C	.	.	LowGQX	.	GT	./.
chr1	17990985	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17990986	.	G	.	.	LowGQX	.	GT	./.
chr1	17990987	.	T	.	.	LowGQX	END=17990989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17990990	.	G	.	.	LowGQX	.	GT	./.
chr1	17990991	.	G	.	.	LowGQX	END=17990998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17990999	.	C	.	.	LowGQX	END=17991000	GT	./.
chr1	17991001	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17991002	.	T	.	.	LowGQX	.	GT	./.
chr1	17991003	.	C	.	.	LowGQX	END=17991012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17991013	.	T	.	.	LowGQX	.	GT	./.
chr1	17991014	.	T	.	.	LowGQX	END=17991051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17991052	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	17991053	.	G	.	.	LowGQX	END=17991069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	17991070	.	G	.	.	LowGQX	END=17991092	GT	./.
chr1	18014046	.	C	.	.	LowGQX	END=18014244	GT	./.
chr1	18016233	.	C	.	.	LowGQX	END=18016345	GT	./.
chr1	18016346	.	G	.	.	LowGQX	END=18016369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18016370	.	T	.	.	LowGQX	.	GT	./.
chr1	18016371	.	G	.	.	LowGQX	END=18016390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18017582	.	T	.	.	LowGQX	END=18017681	GT	./.
chr1	18021397	.	A	.	.	LowGQX	END=18021400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18021401	.	A	.	.	LowGQX	END=18021403	GT	./.
chr1	18021404	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18021405	.	G	.	.	LowGQX	END=18021406	GT	./.
chr1	18021407	.	A	.	.	LowGQX	END=18021408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18021409	.	G	.	.	LowGQX	.	GT	./.
chr1	18021410	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18021411	.	C	.	.	LowGQX	.	GT	./.
chr1	18021412	.	A	.	.	LowGQX	END=18021414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18021415	.	C	.	.	LowGQX	.	GT	./.
chr1	18021416	.	C	.	.	LowGQX	END=18021420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18021421	.	T	.	.	LowGQX	.	GT	./.
chr1	18021422	.	T	.	.	LowGQX	END=18021426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18021427	.	A	.	.	LowGQX	END=18021777	GT	./.
chr1	18023341	.	A	.	.	LowGQX	END=18023769	GT	./.
chr1	18023770	.	G	.	.	LowGQX	END=18023781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18023782	.	C	.	.	LowGQX	.	GT	./.
chr1	18023783	.	T	.	.	LowGQX	END=18023876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18023877	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	18024093	.	G	.	.	LowGQX	END=18024270	GT	./.
chr1	18149502	.	C	.	.	LowGQX	END=18149594	GT	./.
chr1	18149595	.	A	.	.	LowGQX	END=18149596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149597	.	A	.	.	LowGQX	.	GT	./.
chr1	18149598	.	T	.	.	LowGQX	END=18149599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149600	.	G	.	.	LowGQX	.	GT	./.
chr1	18149601	.	T	.	.	LowGQX	END=18149602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149603	.	A	.	.	LowGQX	.	GT	./.
chr1	18149604	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149605	.	C	.	.	LowGQX	.	GT	./.
chr1	18149606	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149607	.	A	.	.	LowGQX	.	GT	./.
chr1	18149608	.	C	.	.	LowGQX	END=18149610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149611	.	A	.	.	LowGQX	.	GT	./.
chr1	18149612	.	C	.	.	LowGQX	END=18149613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149614	.	G	.	.	LowGQX	END=18149615	GT	./.
chr1	18149616	.	G	.	.	LowGQX	END=18149617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149618	.	A	.	.	LowGQX	.	GT	./.
chr1	18149619	.	A	.	.	LowGQX	END=18149621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149622	.	A	.	.	LowGQX	END=18149625	GT	./.
chr1	18149626	.	C	.	.	LowGQX	END=18149627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149628	.	C	.	.	LowGQX	.	GT	./.
chr1	18149629	.	T	.	.	LowGQX	END=18149636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149637	.	G	.	.	LowGQX	.	GT	./.
chr1	18149638	.	C	.	.	LowGQX	END=18149652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149653	.	T	.	.	LowGQX	.	GT	./.
chr1	18149654	.	G	.	.	LowGQX	END=18149655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149656	.	G	.	.	LowGQX	END=18149657	GT	./.
chr1	18149658	.	G	.	.	LowGQX	END=18149669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149670	.	A	.	.	LowGQX	.	GT	./.
chr1	18149671	.	C	.	.	LowGQX	END=18149675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149676	.	G	.	.	LowGQX	.	GT	./.
chr1	18149677	.	C	.	.	LowGQX	END=18149686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149687	.	A	.	.	LowGQX	.	GT	./.
chr1	18149688	.	C	.	.	LowGQX	END=18149691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149692	.	T	.	.	LowGQX	.	GT	./.
chr1	18149693	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149694	.	G	.	.	LowGQX	.	GT	./.
chr1	18149695	.	C	.	.	LowGQX	END=18149697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149698	.	C	.	.	LowGQX	.	GT	./.
chr1	18149699	.	C	.	.	LowGQX	END=18149700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149701	.	C	.	.	LowGQX	.	GT	./.
chr1	18149702	.	A	.	.	LowGQX	END=18149729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149730	.	A	.	.	LowGQX	.	GT	./.
chr1	18149731	.	G	.	.	LowGQX	END=18149733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149734	.	T	.	.	LowGQX	.	GT	./.
chr1	18149735	.	G	.	.	LowGQX	END=18149743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18149744	.	C	.	.	LowGQX	END=18149853	GT	./.
chr1	18152260	.	A	.	.	LowGQX	END=18152686	GT	./.
chr1	18152687	.	G	.	.	LowGQX	END=18152853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18152854	.	A	.	.	LowGQX	END=18153016	GT	./.
chr1	18434548	.	A	.	.	LowGQX	END=18434707	GT	./.
chr1	18554390	.	A	.	.	LowGQX	END=18554506	GT	./.
chr1	18605309	.	A	.	.	LowGQX	END=18605318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	18605319	.	G	.	.	LowGQX	.	GT	./.
chr1	18605320	.	G	.	.	LowGQX	END=18605335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18605336	.	C	.	.	LowGQX	.	GT	./.
chr1	18605337	.	A	.	.	LowGQX	END=18605358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18605359	.	A	.	.	LowGQX	.	GT	./.
chr1	18605360	.	T	.	.	LowGQX	END=18605367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18605368	.	G	.	.	LowGQX	.	GT	./.
chr1	18605369	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18605370	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	18605371	.	G	.	.	LowGQX	END=18605390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18605391	.	T	.	.	LowGQX	.	GT	./.
chr1	18605392	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18605393	.	G	.	.	LowGQX	END=18605408	GT	./.
chr1	18618358	.	A	.	.	LowGQX	END=18618483	GT	./.
chr1	18661384	.	A	.	.	LowGQX	END=18661506	GT	./.
chr1	18688607	.	A	.	.	LowGQX	END=18688726	GT	./.
chr1	18691715	.	A	.	.	LowGQX	END=18691959	GT	./.
chr1	18691960	.	A	.	.	LowGQX	END=18692038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	18692039	.	G	A	4.97	LowGQX;LowQD;SB	BaseQRankSum=-1.026;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.000;QD=1.24;ReadPosRankSum=-1.026;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:33.29:33,0,39:60:5:0.500
chr1	18692040	.	C	.	.	LowGQX	END=18692156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	18692157	.	T	.	.	LowGQX	END=18692193	GT	./.
chr1	18702797	.	C	.	.	LowGQX	END=18702896	GT	./.
chr1	18703292	.	A	.	.	LowGQX	END=18703488	GT	./.
chr1	18703805	.	A	.	.	LowGQX	END=18703821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	18703822	.	C	.	.	LowGQX	.	GT	./.
chr1	18703823	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	18703824	.	A	.	.	LowGQX	.	GT	./.
chr1	18703825	.	T	.	.	LowGQX	END=18703831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	18703832	.	C	.	.	LowGQX	.	GT	./.
chr1	18703833	.	C	.	.	LowGQX	END=18703878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	18703879	.	T	.	.	LowGQX	END=18703881	GT	./.
chr1	18703882	.	A	.	.	LowGQX	END=18703888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	18703889	.	A	.	.	LowGQX	.	GT	./.
chr1	18703890	.	A	.	.	LowGQX	END=18703891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	18703892	.	C	.	.	LowGQX	.	GT	./.
chr1	18703893	.	C	.	.	LowGQX	END=18703912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	18703913	.	G	.	.	LowGQX	.	GT	./.
chr1	18703914	.	A	.	.	LowGQX	END=18703917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	18703918	.	C	.	.	LowGQX	.	GT	./.
chr1	18703919	.	T	.	.	LowGQX	END=18703929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18703930	.	G	.	.	LowGQX	.	GT	./.
chr1	18703931	.	T	.	.	LowGQX	END=18703938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18703939	.	C	.	.	LowGQX	END=18703956	GT	./.
chr1	18704736	.	G	.	.	LowGQX	END=18704773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18704774	.	G	.	.	LowGQX	END=18704784	GT	./.
chr1	18704785	.	G	.	.	LowGQX	END=18704786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18704787	.	G	.	.	LowGQX	.	GT	./.
chr1	18704788	.	C	.	.	LowGQX	END=18704797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18704798	.	C	.	.	LowGQX	.	GT	./.
chr1	18704799	.	A	.	.	LowGQX	END=18704814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18704815	.	A	.	.	LowGQX	.	GT	./.
chr1	18704816	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18704817	.	G	.	.	LowGQX	.	GT	./.
chr1	18704818	.	T	.	.	LowGQX	END=18704820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18704821	.	A	.	.	LowGQX	.	GT	./.
chr1	18704822	.	G	.	.	LowGQX	END=18704824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18704825	.	A	.	.	LowGQX	END=18704826	GT	./.
chr1	18704827	.	C	.	.	LowGQX	END=18704835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18807474	.	G	.	.	LowGQX	END=18808076	GT	./.
chr1	18808077	.	A	.	.	LowGQX	END=18808082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18808083	.	A	.	.	LowGQX	.	GT	./.
chr1	18808084	.	A	.	.	LowGQX	END=18808132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18808133	.	A	.	.	LowGQX	END=18808134	GT	./.
chr1	18808135	.	C	.	.	LowGQX	END=18808291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18808292	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	18808293	.	A	.	.	LowGQX	END=18808303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18808304	.	A	.	.	LowGQX	END=18808378	GT	./.
chr1	18808379	.	T	.	.	LowGQX	END=18808464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18808465	.	T	A	58.29	LowGQ;LowGQX	DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=14.57;SB=-70.87	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,4:4:6.02:90,6,0:60:6:1.000
chr1	18808466	.	G	.	.	LowGQX	END=18808525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	18808526	.	A	C	58.28	LowGQ;LowGQX	DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=14.57;SB=-63.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,4:4:6.02:90,6,0:60:6:1.000
chr1	18808527	.	C	.	.	LowGQX	END=18808581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18808582	.	A	.	.	LowGQX	END=18809169	GT	./.
chr1	18809170	.	C	.	.	LowGQX	END=18809221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809222	.	C	.	.	LowGQX	.	GT	./.
chr1	18809223	.	G	.	.	LowGQX	END=18809252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809253	.	C	.	.	LowGQX	.	GT	./.
chr1	18809254	.	C	.	.	LowGQX	END=18809270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809271	.	T	.	.	LowGQX	.	GT	./.
chr1	18809272	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809273	.	A	.	.	LowGQX	.	GT	./.
chr1	18809274	.	A	.	.	LowGQX	END=18809300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809301	.	T	.	.	LowGQX	.	GT	./.
chr1	18809302	.	G	.	.	LowGQX	END=18809303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809304	.	A	.	.	LowGQX	.	GT	./.
chr1	18809305	.	C	.	.	LowGQX	END=18809309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809310	.	G	.	.	LowGQX	.	GT	./.
chr1	18809311	.	G	.	.	LowGQX	END=18809312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809313	.	A	.	.	LowGQX	.	GT	./.
chr1	18809314	.	C	.	.	LowGQX	END=18809315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809316	.	T	.	.	LowGQX	END=18809317	GT	./.
chr1	18809318	.	G	.	.	LowGQX	END=18809319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809320	.	C	.	.	LowGQX	END=18809404	GT	./.
chr1	18809405	.	C	.	.	LowGQX	END=18809407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809408	.	T	.	.	LowGQX	.	GT	./.
chr1	18809409	.	T	.	.	LowGQX	END=18809416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809417	.	T	.	.	LowGQX	.	GT	./.
chr1	18809418	.	T	.	.	LowGQX	END=18809430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809431	.	G	.	.	LowGQX	.	GT	./.
chr1	18809432	.	C	.	.	LowGQX	END=18809435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809436	.	A	.	.	LowGQX	.	GT	./.
chr1	18809437	.	G	.	.	LowGQX	END=18809455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809456	.	C	.	.	LowGQX	.	GT	./.
chr1	18809457	.	C	.	.	LowGQX	END=18809458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809459	.	A	.	.	LowGQX	.	GT	./.
chr1	18809460	.	C	.	.	LowGQX	END=18809465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809466	.	G	.	.	LowGQX	.	GT	./.
chr1	18809467	.	C	.	.	LowGQX	END=18809476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809477	.	C	.	.	LowGQX	.	GT	./.
chr1	18809478	.	G	.	.	LowGQX	END=18809497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809498	.	G	.	.	LowGQX	.	GT	./.
chr1	18809499	.	T	.	.	LowGQX	END=18809515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809516	.	C	.	.	LowGQX	.	GT	./.
chr1	18809517	.	G	.	.	LowGQX	END=18809554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809555	.	C	.	.	LowGQX	END=18809745	GT	./.
chr1	18809746	.	G	.	.	LowGQX	END=18809749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809750	.	A	.	.	LowGQX	.	GT	./.
chr1	18809751	.	C	.	.	LowGQX	END=18809797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18809798	.	A	.	.	LowGQX	.	GT	./.
chr1	18809799	.	C	.	.	LowGQX	END=18809811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	18810462	.	A	.	.	LowGQX	END=18810561	GT	./.
chr1	18958091	.	C	.	.	PASS	END=18958121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	18958122	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:46:60
chr1	18958123	.	C	.	.	PASS	END=18958128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	18958129	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:65:60
chr1	18958130	.	G	.	.	PASS	END=18958170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	18958171	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:69:60
chr1	18958172	.	C	.	.	PASS	END=18958176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	18958177	.	T	.	.	PASS	END=18958188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	18958189	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:54:60
chr1	18958190	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:84:60
chr1	18960795	.	A	.	.	PASS	END=18960844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	18960845	.	T	.	.	PASS	END=18961004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	18961005	.	T	.	.	PASS	END=18961033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	18961034	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:116:99:60
chr1	18961603	.	A	.	.	PASS	END=18961640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	18961641	.	G	.	.	PASS	END=18961709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	18961710	.	T	.	.	PASS	END=18961736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	18962729	.	A	.	.	PASS	END=18962837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	18962838	.	A	.	.	PASS	END=18962867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	19018246	.	A	.	.	PASS	END=19018305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	19018306	.	C	.	.	PASS	END=19018436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	19018437	.	C	.	.	PASS	END=19018449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	19027145	.	A	.	.	PASS	END=19027254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	19027255	.	A	.	.	PASS	END=19027268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	19027269	.	C	.	.	PASS	END=19027283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	19027284	.	C	.	.	PASS	END=19027305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	19027306	.	T	.	.	PASS	END=19027314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	19029586	.	A	.	.	PASS	END=19029596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	19029597	.	G	.	.	PASS	END=19029615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	19029616	.	G	.	.	PASS	END=19029626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	19029627	.	C	.	.	PASS	END=19029643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	19029644	.	G	.	.	PASS	END=19029685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	19029686	.	G	.	.	PASS	END=19029777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	19029778	.	C	.	.	PASS	END=19029792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	19062124	.	A	.	.	PASS	END=19062145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	19062146	.	C	.	.	PASS	END=19062181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:268:99:60
chr1	19062182	.	C	.	.	PASS	END=19062311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:321:99:60
chr1	19062312	.	A	.	.	PASS	END=19062360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	19062361	.	A	.	.	PASS	END=19062400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	19062401	.	C	.	.	PASS	END=19062495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	19062496	.	A	.	.	PASS	END=19062535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	19071256	.	A	.	.	PASS	END=19071279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:92:60
chr1	19071280	.	T	.	.	PASS	END=19071343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	19071344	.	C	.	.	PASS	END=19071384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr1	19071385	.	C	.	.	PASS	END=19071422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	19071423	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:142:99:60
chr1	19166080	.	C	.	.	PASS	END=19166089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	19166090	.	G	.	.	PASS	END=19166102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	19166103	.	C	.	.	PASS	END=19166108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	19166109	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:48:60
chr1	19166110	.	T	.	.	PASS	END=19166139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	19166140	.	C	.	.	PASS	END=19166171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	19166172	.	A	.	.	PASS	END=19166217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	19166218	.	T	.	.	PASS	END=19166236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	19166237	.	G	.	.	PASS	END=19166305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	19166306	.	A	.	.	PASS	END=19166359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	19166360	.	C	.	.	PASS	END=19166489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	19166490	.	G	.	.	PASS	END=19166519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	19166520	.	A	.	.	PASS	END=19166565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	19166566	.	C	.	.	PASS	END=19166589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	19166590	.	A	.	.	PASS	END=19166696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	19166697	.	A	.	.	PASS	END=19166774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	19166775	.	A	.	.	PASS	END=19166828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	19166829	.	A	G	640.11	PASS	BaseQRankSum=-0.063;DP=69;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=8.5750;MQ=60;MQ0=0;MQRankSum=0.577;QD=9.28;ReadPosRankSum=0.727;SB=-290.16	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:41,27:69:99:670,0,1186:60:99:0.397
chr1	19166830	.	T	.	.	PASS	END=19166997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	19166998	.	G	.	.	PASS	END=19167029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	19168221	.	A	.	.	PASS	END=19168343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	19168344	.	G	.	.	PASS	END=19168348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	19175833	.	A	.	.	PASS	END=19175845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	19175846	.	T	C	1886.25	PASS	BaseQRankSum=0.891;DP=150;Dels=0.00;FS=8.499;HRun=0;HaplotypeScore=43.8089;MQ=60;MQ0=0;MQRankSum=-0.413;QD=12.57;ReadPosRankSum=-1.699;SB=-596.93	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:75,75:150:99:1916,0,1754:60:99:0.500
chr1	19175847	.	G	.	.	PASS	END=19175871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	19175872	.	T	.	.	PASS	END=19175990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	19175991	.	G	.	.	PASS	END=19176033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	19176034	.	T	.	.	PASS	END=19176046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	19180705	.	A	.	.	PASS	END=19180727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	19180728	.	C	.	.	PASS	END=19180782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	19180783	.	G	.	.	PASS	END=19180819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:272:99:60
chr1	19180820	.	C	.	.	PASS	END=19180947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:330:99:60
chr1	19180948	.	C	.	.	PASS	END=19181014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:286:99:60
chr1	19181015	.	G	C	3893.17	PASS	BaseQRankSum=1.895;DP=321;Dels=0.00;FS=1.378;HRun=1;HaplotypeScore=44.8282;MQ=60;MQ0=0;MQRankSum=-1.508;QD=12.13;ReadPosRankSum=-0.141;SB=-2026.85	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:168,152:321:99:3893,0,4585:60:99:0.475
chr1	19181016	.	C	.	.	PASS	END=19181081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:320:99:60
chr1	19181082	.	A	C	3501.16	PASS	BaseQRankSum=0.747;DP=318;Dels=0.00;FS=3.877;HRun=2;HaplotypeScore=42.8699;MQ=60;MQ0=0;MQRankSum=1.705;QD=11.01;ReadPosRankSum=0.801;SB=-1960.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:171,146:318:99:3501,0,4364:60:99:0.461
chr1	19181083	.	G	.	.	PASS	END=19181170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:274:99:60
chr1	19181171	.	G	.	.	PASS	END=19181392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	19181393	.	T	C	2764.47	PASS	BaseQRankSum=2.597;DP=226;Dels=0.00;FS=2.746;HRun=0;HaplotypeScore=23.8835;MQ=60;MQ0=0;MQRankSum=-0.901;QD=12.23;ReadPosRankSum=-0.394;SB=-735.75	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:124,102:226:99:2794,0,3263:60:99:0.451
chr1	19181394	.	G	.	.	PASS	END=19181477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	19181478	.	G	.	.	PASS	END=19181482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	19183823	.	A	.	.	PASS	END=19183846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	19183847	.	A	.	.	PASS	END=19183874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	19183875	.	C	.	.	PASS	END=19183960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	19183961	.	G	.	.	PASS	END=19184005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	19184006	.	A	.	.	PASS	END=19184036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	19184037	.	C	.	.	PASS	END=19184076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	19184077	.	A	G	708.36	PASS	BaseQRankSum=0.052;DP=54;Dels=0.00;FS=1.194;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=0.278;QD=13.12;ReadPosRankSum=0.729;SB=-229.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:29,25:54:99:738,0,838:60:99:0.463
chr1	19184078	.	A	.	.	PASS	END=19184127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	19185971	.	A	.	.	PASS	END=19185995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	19185996	.	G	.	.	PASS	END=19186059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	19186060	.	T	.	.	PASS	END=19186121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	19186122	.	C	.	.	PASS	END=19186128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	19186129	.	G	C	2503.43	PASS	BaseQRankSum=1.611;DP=87;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=10.4689;MQ=60;MQ0=0;MQRankSum=-1.208;QD=28.78;ReadPosRankSum=0.645;SB=-819.84	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,85:87:99:2536,193,0:60:99:0.988
chr1	19186130	.	A	.	.	PASS	END=19186156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	19199288	.	G	.	.	PASS	END=19199335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	19199336	.	G	.	.	PASS	END=19199401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	19199402	.	C	.	.	PASS	END=19199425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	19199426	.	T	.	.	PASS	END=19199486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	19199487	.	A	G	700.74	PASS	BaseQRankSum=2.137;DP=64;Dels=0.00;FS=1.022;HRun=1;HaplotypeScore=4.7873;MQ=60;MQ0=0;MQRankSum=-0.118;QD=10.95;ReadPosRankSum=-0.574;SB=-287.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,28:64:99:731,0,947:60:99:0.444
chr1	19199488	.	T	.	.	PASS	END=19199502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	19200906	.	G	.	.	PASS	END=19200909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	19200910	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:6:60
chr1	19200911	.	T	.	.	PASS	END=19200924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	19200925	.	C	.	.	PASS	END=19200931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	19200932	.	C	.	.	PASS	END=19200946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	19200947	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:51:60
chr1	19200948	.	C	.	.	PASS	END=19200950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	19200951	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:38:60
chr1	19200952	.	C	.	.	PASS	END=19200988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr1	19200989	.	C	.	.	PASS	END=19201000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	19201001	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:51:60
chr1	19201002	.	C	.	.	PASS	END=19201064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	19201065	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:53:60
chr1	19201066	.	C	.	.	PASS	END=19201080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	19201081	.	A	.	.	PASS	END=19201089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	19201090	.	A	.	.	PASS	END=19201104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	19201105	.	A	.	.	PASS	END=19201117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	19201118	.	C	.	.	LowGQX	END=19201119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:1:60
chr1	19201120	.	C	.	.	PASS	END=19201126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	19201825	.	A	.	.	PASS	END=19201845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	19201846	.	C	.	.	PASS	END=19201955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	19201956	.	A	G	1420.62	PASS	BaseQRankSum=1.293;DP=124;Dels=0.00;FS=5.994;HRun=0;HaplotypeScore=10.4161;MQ=60;MQ0=0;MQRankSum=1.094;QD=11.46;ReadPosRankSum=1.074;SB=-723.22	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:67,56:124:99:1451,0,1675:60:99:0.455
chr1	19201957	.	T	.	.	PASS	END=19201987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	19201988	.	C	.	.	PASS	END=19202004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	19202005	.	A	.	.	PASS	END=19202043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	19202044	.	A	.	.	PASS	END=19202048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	19202758	.	G	.	.	PASS	END=19202769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	19202770	.	T	C	2079.98	PASS	DP=62;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.8905;MQ=60;MQ0=0;QD=33.55;SB=-229.52	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,60:62:99:2113,163,0:60:99:1.000
chr1	19202771	.	T	.	.	PASS	END=19202783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	19202784	.	A	.	.	PASS	END=19202816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	19202817	.	T	.	.	PASS	END=19202838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	19202839	.	G	.	.	PASS	END=19202893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	19202894	.	C	.	.	PASS	END=19202895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	19202896	.	G	A	1940.28	PASS	BaseQRankSum=-1.370;DP=203;Dels=0.00;FS=4.499;HRun=0;HaplotypeScore=24.7016;MQ=60;MQ0=0;MQRankSum=-0.142;QD=9.56;ReadPosRankSum=-1.735;SB=-937.04	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:108,93:203:99:1970,0,2385:60:99:0.463
chr1	19202897	.	G	.	.	PASS	END=19202916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	19202917	.	T	C	2124.15	PASS	BaseQRankSum=1.626;DP=188;Dels=0.00;FS=0.580;HRun=0;HaplotypeScore=33.1847;MQ=60;MQ0=0;MQRankSum=-1.682;QD=11.30;ReadPosRankSum=-0.200;SB=-1075.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:97,86:188:99:2154,0,2247:60:99:0.470
chr1	19202918	.	G	.	.	PASS	END=19202925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	19202926	.	T	C	2080.51	PASS	BaseQRankSum=1.239;DP=172;Dels=0.00;FS=2.972;HRun=0;HaplotypeScore=28.4076;MQ=60;MQ0=0;MQRankSum=-1.071;QD=12.10;ReadPosRankSum=0.043;SB=-1125.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:86,82:172:99:2111,0,1923:60:99:0.488
chr1	19202927	.	G	.	.	PASS	END=19202974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	19202975	.	G	.	.	PASS	END=19202994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	19202995	.	G	.	.	PASS	END=19203012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	19203651	.	C	.	.	PASS	END=19203658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:96:60
chr1	19203659	.	A	.	.	PASS	END=19203671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	19203672	.	A	.	142.22	PASS	DP=105;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:80:105:99:60:99
chr1	19203673	.	C	.	.	PASS	END=19203700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	19203701	.	C	.	.	PASS	END=19203800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	19203859	.	A	.	.	PASS	END=19203890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	19203891	.	G	.	.	PASS	END=19203937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	19203938	.	T	.	.	PASS	END=19203996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	19203997	.	C	G	5503.80	PASS	DP=190;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=8.5223;MQ=60;MQ0=0;QD=28.97;SB=-2823.20	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,190:190:99:5504,412,0:60:99:1.000
chr1	19203998	.	G	.	.	PASS	END=19204041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	19204042	.	C	.	.	PASS	END=19204077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	19204078	.	C	.	.	PASS	END=19204102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	19204103	.	C	.	.	PASS	END=19204113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	19204114	.	G	.	.	PASS	END=19204115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	19204116	.	T	.	.	PASS	END=19204122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	19204123	.	T	.	.	PASS	END=19204127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	19204128	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:42:60
chr1	19204129	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:60:60
chr1	19204130	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:90:59
chr1	19204131	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:60:59
chr1	19204132	.	G	.	.	PASS	END=19204137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:84:59
chr1	19204138	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:72:59
chr1	19204139	.	G	.	.	PASS	END=19204153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:93:59
chr1	19204154	.	G	A	2022.03	PASS	DP=68;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=18.9911;MQ=59;MQ0=0;QD=29.74;SB=-300.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,66:68:99:2055,162,0:59:99:1.000
chr1	19204155	.	G	.	.	PASS	END=19204157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:59
chr1	19205743	.	G	.	.	PASS	END=19205759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	19205760	.	G	.	.	PASS	END=19205764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	19205765	.	A	.	.	PASS	END=19205766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:59:60
chr1	19205767	.	G	.	.	PASS	END=19205783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	19205784	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:66:60
chr1	19205785	.	A	.	.	PASS	END=19205802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	19205803	.	G	.	.	PASS	END=19205904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	19205905	.	A	.	.	PASS	END=19205907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:79:60
chr1	19205908	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:42:60
chr1	19205909	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:72:60
chr1	19205910	.	A	.	.	PASS	END=19205918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr1	19208143	.	C	.	.	PASS	END=19208145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	19208145	.	G	GGGTTGCCT	5252.14	PASS	DP=48;FS=0.000;HRun=0;HaplotypeScore=115.7745;MQ=60;MQ0=0;QD=109.42;SB=-733.09	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:5,41:48:99:5252,144,0:60:99:0.891
chr1	19208146	.	G	.	.	PASS	END=19208163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:78:60
chr1	19208164	.	C	.	.	PASS	END=19208168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	19208169	.	G	.	.	PASS	END=19208186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	19208187	.	G	.	.	PASS	END=19208222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	19208223	.	G	.	.	PASS	END=19208250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	19208251	.	C	.	.	PASS	END=19208332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	19208333	.	A	.	.	PASS	END=19208371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	19208372	.	C	.	.	PASS	END=19208382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	19208383	.	T	.	.	PASS	END=19208393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	19208394	.	T	.	.	PASS	END=19208413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	19208414	.	A	.	.	PASS	END=19208432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	19209072	.	A	.	.	LowGQX	END=19209171	GT	./.
chr1	19209562	.	T	.	.	PASS	END=19209593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	19209594	.	G	.	.	PASS	END=19209682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	19209683	.	C	.	.	PASS	END=19209743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	19209744	.	C	.	.	PASS	END=19209772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	19209773	.	C	.	.	PASS	END=19209825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	19209826	.	G	.	.	PASS	END=19209921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	19209922	.	C	.	.	PASS	END=19209932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	19209933	.	G	.	.	PASS	END=19209965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	19209966	.	C	.	.	PASS	END=19209973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:96:60
chr1	19211916	.	C	.	.	PASS	END=19211918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:59
chr1	19211919	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:45:59
chr1	19211920	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:63:59
chr1	19211921	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:48:59
chr1	19211922	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:24:59
chr1	19211923	.	C	.	.	PASS	END=19211924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:59
chr1	19211925	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:58
chr1	19211926	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:59
chr1	19211927	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:59
chr1	19211928	.	C	.	.	PASS	END=19211929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:59
chr1	19211930	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:2:58
chr1	19211931	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:58
chr1	19211932	.	C	.	.	PASS	END=19211934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:58
chr1	19211935	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:1:58
chr1	19211936	.	C	.	.	PASS	END=19211942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:58
chr1	19211943	.	C	.	.	PASS	END=19211944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:59
chr1	19211945	.	C	.	.	PASS	END=19211948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	19211949	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	19211950	.	G	.	.	PASS	END=19211952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	19211953	.	C	.	.	PASS	END=19211957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	19211958	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:69:60
chr1	19211959	.	C	.	.	PASS	END=19211967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	19211968	.	T	.	.	PASS	END=19211979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:83:60
chr1	19211980	.	G	.	.	PASS	END=19211992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	19211993	.	T	.	.	PASS	END=19212014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	19212015	.	C	.	.	PASS	END=19212068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	19212069	.	G	.	.	PASS	END=19212129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	19212130	.	G	.	.	PASS	END=19212148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	19212149	.	C	.	.	PASS	END=19212167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	19212168	.	A	.	.	PASS	END=19212173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	19212907	.	G	.	.	PASS	END=19212938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	19212939	.	G	.	.	PASS	END=19212991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	19212992	.	C	.	.	PASS	END=19213050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	19213051	.	A	.	.	PASS	END=19213056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	19215805	.	A	.	.	PASS	END=19215808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	19215809	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:73:60
chr1	19215810	.	A	.	.	PASS	END=19215833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:93:60
chr1	19215834	.	T	C	773.94	PASS	BaseQRankSum=1.169;DP=65;Dels=0.00;FS=2.258;HRun=1;HaplotypeScore=10.6271;MQ=60;MQ0=0;MQRankSum=1.667;QD=11.91;ReadPosRankSum=-0.367;SB=-468.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,35:65:99:804,0,611:60:99:0.556
chr1	19215835	.	C	.	.	PASS	END=19215857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	19215858	.	A	.	.	PASS	END=19215944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	19215945	.	A	.	.	PASS	END=19215977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	19215978	.	C	.	.	PASS	END=19215994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr1	19215995	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:70:60
chr1	19215996	.	C	.	.	PASS	END=19215999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	19216455	.	G	.	.	PASS	END=19216467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	19216468	.	G	.	.	PASS	END=19216508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	19216509	.	T	.	.	PASS	END=19216532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	19216533	.	G	.	.	PASS	END=19216612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	19216613	.	G	.	.	PASS	END=19216650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	19223554	.	C	.	.	LowGQX	END=19223653	GT	./.
chr1	19228845	.	A	.	.	LowGQX	END=19228855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19228856	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	19228857	.	C	.	.	LowGQX	END=19228883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19228884	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	19228885	.	C	.	.	LowGQX	END=19228886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	19228887	.	C	.	.	LowGQX	END=19228908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	19228909	.	G	.	.	LowGQX	END=19228911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	19228912	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr1	19228913	.	C	.	.	LowGQX	END=19228914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	19228915	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	19228916	.	G	.	.	LowGQX	END=19228921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	19228922	.	C	.	.	LowGQX	END=19228923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	19228924	.	C	.	.	PASS	END=19228925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	19228926	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	19228927	.	G	.	.	PASS	END=19228928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	19228929	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	19228930	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	19228931	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	19228932	.	G	.	.	PASS	END=19228938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	19228939	.	G	.	.	PASS	END=19228943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	19228944	.	G	.	.	PASS	END=19228952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:81:60
chr1	19228953	.	C	.	.	PASS	END=19228964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	19228965	.	G	.	.	PASS	END=19229021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	19229022	.	G	.	.	PASS	END=19229068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:96:60
chr1	19235054	.	A	.	.	LowGQX	.	GT	./.
chr1	19235055	.	T	.	.	LowGQX	END=19235057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19235058	.	G	.	.	LowGQX	.	GT	./.
chr1	19235059	.	C	.	.	LowGQX	END=19235064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19235065	.	A	.	.	LowGQX	.	GT	./.
chr1	19235066	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19235067	.	G	.	.	LowGQX	END=19235068	GT	./.
chr1	19235069	.	G	.	.	LowGQX	END=19235073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19235074	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	19235075	.	C	.	.	LowGQX	END=19235076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19235077	.	T	.	.	LowGQX	.	GT	./.
chr1	19235078	.	C	.	.	LowGQX	END=19235082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19235083	.	T	.	.	LowGQX	.	GT	./.
chr1	19235084	.	C	.	.	LowGQX	END=19235092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19235093	.	A	.	.	LowGQX	.	GT	./.
chr1	19235094	.	C	.	.	LowGQX	END=19235095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19235096	.	C	.	.	LowGQX	END=19235098	GT	./.
chr1	19235099	.	C	.	.	LowGQX	END=19235102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19235103	.	G	.	.	LowGQX	END=19235104	GT	./.
chr1	19235105	.	T	.	.	LowGQX	END=19235108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19235109	.	A	.	.	LowGQX	.	GT	./.
chr1	19235110	.	T	.	.	LowGQX	END=19235111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19235112	.	T	.	.	LowGQX	END=19235114	GT	./.
chr1	19235115	.	A	.	.	LowGQX	END=19235119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19235120	.	C	.	.	LowGQX	END=19235121	GT	./.
chr1	19235122	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19235123	.	A	.	.	LowGQX	.	GT	./.
chr1	19235124	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19235125	.	T	.	.	LowGQX	END=19235126	GT	./.
chr1	19235127	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19235128	.	C	.	.	LowGQX	.	GT	./.
chr1	19235129	.	T	.	.	LowGQX	END=19235131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19235132	.	T	.	.	LowGQX	END=19235133	GT	./.
chr1	19235134	.	G	.	.	LowGQX	END=19235136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19235137	.	A	.	.	LowGQX	END=19235138	GT	./.
chr1	19235139	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19235140	.	G	.	.	LowGQX	.	GT	./.
chr1	19235141	.	A	.	.	LowGQX	END=19235142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19235143	.	C	.	.	LowGQX	END=19235160	GT	./.
chr1	19236835	.	C	.	.	LowGQX	END=19236880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19236881	.	A	.	.	LowGQX	.	GT	./.
chr1	19236882	.	C	.	.	LowGQX	END=19236966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19237874	.	T	.	.	LowGQX	END=19237885	GT	./.
chr1	19237886	.	G	.	.	LowGQX	END=19238026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19238456	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	19238457	.	C	.	.	LowGQX	END=19238459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19238460	.	G	.	.	LowGQX	END=19238461	GT	./.
chr1	19238462	.	C	.	.	LowGQX	END=19238464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19238465	.	G	.	.	LowGQX	.	GT	./.
chr1	19238466	.	C	.	.	LowGQX	END=19238468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19238469	.	G	.	.	LowGQX	.	GT	./.
chr1	19238470	.	T	.	.	LowGQX	END=19238477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19238478	.	C	.	.	LowGQX	END=19238479	GT	./.
chr1	19238480	.	G	.	.	LowGQX	END=19238490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19238491	.	G	.	.	LowGQX	.	GT	./.
chr1	19238492	.	T	.	.	LowGQX	END=19238494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19238495	.	A	.	.	LowGQX	.	GT	./.
chr1	19238496	.	A	.	.	LowGQX	END=19238497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19238498	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	19238499	.	C	.	.	LowGQX	END=19238501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19238502	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	19238503	.	C	.	5.68	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr1	19238504	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19238505	.	G	.	.	LowGQX	.	GT	./.
chr1	19238506	.	A	.	.	LowGQX	END=19238507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19238508	.	C	.	.	LowGQX	.	GT	./.
chr1	19238509	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19238510	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	19238511	.	C	.	.	LowGQX	END=19238524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19238525	.	T	.	.	LowGQX	.	GT	./.
chr1	19238526	.	C	.	.	LowGQX	END=19238529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19238530	.	T	.	.	LowGQX	.	GT	./.
chr1	19238531	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19238532	.	C	.	.	LowGQX	END=19238533	GT	./.
chr1	19238534	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19238535	.	C	.	.	LowGQX	.	GT	./.
chr1	19238536	.	G	.	.	LowGQX	END=19238539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19238540	.	G	.	.	LowGQX	.	GT	./.
chr1	19238541	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19238542	.	C	.	.	LowGQX	.	GT	./.
chr1	19238543	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19238544	.	G	.	.	LowGQX	.	GT	./.
chr1	19238545	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19238546	.	C	.	.	LowGQX	.	GT	./.
chr1	19238547	.	A	.	.	LowGQX	END=19238548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19238549	.	A	.	.	LowGQX	.	GT	./.
chr1	19238550	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19238551	.	T	.	.	LowGQX	END=19238553	GT	./.
chr1	19238554	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19238555	.	C	.	.	LowGQX	END=19238556	GT	./.
chr1	19238557	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19238558	.	C	.	.	LowGQX	END=19238560	GT	./.
chr1	19238561	.	A	.	.	LowGQX	END=19238565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19238566	.	A	.	.	LowGQX	.	GT	./.
chr1	19238567	.	A	.	.	LowGQX	END=19238569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19238570	.	T	.	.	LowGQX	END=19238571	GT	./.
chr1	19238572	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19238573	.	C	.	.	LowGQX	END=19238576	GT	./.
chr1	19238577	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19243396	.	C	.	.	LowGQX	END=19243536	GT	./.
chr1	19244855	.	C	.	.	LowGQX	END=19244996	GT	./.
chr1	19246170	.	A	.	.	LowGQX	END=19246184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19246185	.	C	.	.	LowGQX	END=19246269	GT	./.
chr1	19247535	.	G	.	.	LowGQX	END=19247634	GT	./.
chr1	19282150	.	G	.	.	LowGQX	END=19282826	GT	./.
chr1	19401309	.	C	.	.	LowGQX	END=19401408	GT	./.
chr1	19403191	.	T	.	.	LowGQX	END=19403339	GT	./.
chr1	19403340	.	G	.	.	LowGQX	END=19403398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19404260	.	C	.	.	LowGQX	END=19404359	GT	./.
chr1	19404466	.	T	.	.	LowGQX	END=19404565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19407841	.	A	.	.	LowGQX	.	GT	./.
chr1	19407842	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19407843	.	C	.	.	LowGQX	.	GT	./.
chr1	19407844	.	T	.	.	LowGQX	END=19407846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19407847	.	T	.	.	LowGQX	.	GT	./.
chr1	19407848	.	G	.	.	LowGQX	END=19407859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19407860	.	A	.	.	LowGQX	.	GT	./.
chr1	19407861	.	G	.	.	LowGQX	END=19407863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19407864	.	A	.	.	LowGQX	.	GT	./.
chr1	19407865	.	C	.	.	LowGQX	END=19407875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19407876	.	T	.	.	LowGQX	END=19407877	GT	./.
chr1	19407878	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19407879	.	G	.	.	LowGQX	.	GT	./.
chr1	19407880	.	A	.	.	LowGQX	END=19407884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19407885	.	A	.	.	LowGQX	.	GT	./.
chr1	19407886	.	C	.	.	LowGQX	END=19407895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19407896	.	C	.	.	LowGQX	.	GT	./.
chr1	19407897	.	C	.	.	LowGQX	END=19407910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19407911	.	A	.	.	LowGQX	.	GT	./.
chr1	19407912	.	C	.	.	LowGQX	END=19407939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19407940	.	G	.	.	LowGQX	.	GT	./.
chr1	19407941	.	G	.	.	LowGQX	END=19407943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19407944	.	G	.	.	LowGQX	END=19407945	GT	./.
chr1	19407946	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19407947	.	A	.	.	LowGQX	.	GT	./.
chr1	19407948	.	A	.	.	LowGQX	END=19407949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19407950	.	G	.	.	LowGQX	.	GT	./.
chr1	19407951	.	G	.	.	LowGQX	END=19407952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19407953	.	C	.	.	LowGQX	END=19407954	GT	./.
chr1	19407955	.	A	.	.	LowGQX	END=19407962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19407963	.	A	.	.	LowGQX	.	GT	./.
chr1	19407964	.	A	.	.	LowGQX	END=19407979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19407980	.	C	.	.	LowGQX	END=19407983	GT	./.
chr1	19407984	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19407985	.	C	.	.	LowGQX	END=19408135	GT	./.
chr1	19408136	.	A	.	.	LowGQX	END=19408137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408138	.	T	.	.	LowGQX	.	GT	./.
chr1	19408139	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408140	.	T	.	.	LowGQX	.	GT	./.
chr1	19408141	.	G	.	.	LowGQX	END=19408142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408143	.	T	.	.	LowGQX	.	GT	./.
chr1	19408144	.	C	.	.	LowGQX	END=19408147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408148	.	T	.	.	LowGQX	END=19408151	GT	./.
chr1	19408152	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408153	.	G	.	.	LowGQX	END=19408154	GT	./.
chr1	19408155	.	T	.	.	LowGQX	END=19408156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408157	.	T	.	.	LowGQX	.	GT	./.
chr1	19408158	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408159	.	T	.	.	LowGQX	END=19408160	GT	./.
chr1	19408161	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408162	.	T	.	.	LowGQX	END=19408163	GT	./.
chr1	19408164	.	A	.	.	LowGQX	END=19408166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408167	.	T	.	.	LowGQX	END=19408168	GT	./.
chr1	19408169	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408170	.	G	.	.	LowGQX	END=19408172	GT	./.
chr1	19408173	.	G	.	.	LowGQX	END=19408175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408176	.	C	.	.	LowGQX	.	GT	./.
chr1	19408177	.	G	.	.	LowGQX	END=19408181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408182	.	G	.	.	LowGQX	.	GT	./.
chr1	19408183	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408184	.	T	.	.	LowGQX	.	GT	./.
chr1	19408185	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408186	.	A	.	.	LowGQX	.	GT	./.
chr1	19408187	.	C	.	.	LowGQX	END=19408192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408193	.	A	.	.	LowGQX	.	GT	./.
chr1	19408194	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408195	.	T	.	.	LowGQX	.	GT	./.
chr1	19408196	.	C	.	.	LowGQX	END=19408197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408198	.	C	.	.	LowGQX	.	GT	./.
chr1	19408199	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408200	.	A	.	.	LowGQX	.	GT	./.
chr1	19408201	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408202	.	C	.	.	LowGQX	.	GT	./.
chr1	19408203	.	C	.	.	LowGQX	END=19408204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408205	.	T	.	.	LowGQX	.	GT	./.
chr1	19408206	.	C	.	.	LowGQX	END=19408221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408222	.	C	.	.	LowGQX	.	GT	./.
chr1	19408223	.	A	.	.	LowGQX	END=19408236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408237	.	T	.	.	LowGQX	.	GT	./.
chr1	19408238	.	C	.	.	LowGQX	END=19408246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408247	.	T	.	.	LowGQX	.	GT	./.
chr1	19408248	.	C	.	.	LowGQX	END=19408249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408250	.	T	.	.	LowGQX	.	GT	./.
chr1	19408251	.	C	.	.	LowGQX	END=19408255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408256	.	T	.	.	LowGQX	.	GT	./.
chr1	19408257	.	C	.	.	LowGQX	END=19408258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408259	.	A	.	.	LowGQX	.	GT	./.
chr1	19408260	.	G	.	.	LowGQX	END=19408284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19408285	.	T	.	.	LowGQX	END=19408300	GT	./.
chr1	19410996	.	A	.	.	LowGQX	END=19411194	GT	./.
chr1	19412637	.	A	.	.	LowGQX	END=19412766	GT	./.
chr1	19413171	.	A	.	.	LowGQX	END=19413317	GT	./.
chr1	19414308	.	A	.	.	LowGQX	END=19414425	GT	./.
chr1	19415251	.	A	.	.	LowGQX	END=19415473	GT	./.
chr1	19419311	.	A	.	.	LowGQX	END=19419414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19419805	.	A	.	.	LowGQX	END=19419982	GT	./.
chr1	19420441	.	A	.	.	LowGQX	END=19420566	GT	./.
chr1	19420567	.	A	.	.	LowGQX	END=19420571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19420572	.	C	.	.	LowGQX	END=19420573	GT	./.
chr1	19420574	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19420575	.	T	.	.	LowGQX	.	GT	./.
chr1	19420576	.	T	.	.	LowGQX	END=19420577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19420578	.	A	.	.	LowGQX	.	GT	./.
chr1	19420579	.	T	.	.	LowGQX	END=19420586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19420587	.	A	.	.	LowGQX	.	GT	./.
chr1	19420588	.	A	.	.	LowGQX	END=19420591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19420592	.	C	.	.	LowGQX	.	GT	./.
chr1	19420593	.	A	.	.	LowGQX	END=19420595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19420596	.	A	.	.	LowGQX	END=19420597	GT	./.
chr1	19420598	.	C	.	.	LowGQX	END=19420600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19420601	.	T	.	.	LowGQX	END=19420603	GT	./.
chr1	19420604	.	A	.	.	LowGQX	END=19420612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19420613	.	A	.	.	LowGQX	END=19420614	GT	./.
chr1	19420615	.	C	.	.	LowGQX	END=19420617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19420618	.	T	.	.	LowGQX	.	GT	./.
chr1	19420619	.	C	.	.	LowGQX	END=19420621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19420622	.	G	.	.	LowGQX	END=19420623	GT	./.
chr1	19420624	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19420625	.	G	.	.	LowGQX	END=19420626	GT	./.
chr1	19420627	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19420628	.	G	.	.	LowGQX	END=19420630	GT	./.
chr1	19420631	.	G	.	.	LowGQX	END=19420632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19420633	.	C	.	.	LowGQX	END=19420635	GT	./.
chr1	19421398	.	A	.	.	LowGQX	END=19421521	GT	./.
chr1	19422037	.	A	.	.	LowGQX	END=19422148	GT	./.
chr1	19423015	.	A	.	.	LowGQX	END=19423146	GT	./.
chr1	19423681	.	A	.	.	LowGQX	END=19423780	GT	./.
chr1	19426082	.	G	.	.	LowGQX	END=19426181	GT	./.
chr1	19426868	.	A	.	.	LowGQX	END=19427069	GT	./.
chr1	19428012	.	A	.	.	LowGQX	END=19428106	GT	./.
chr1	19428107	.	C	.	.	LowGQX	END=19428137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19430576	.	A	.	.	LowGQX	END=19430753	GT	./.
chr1	19431070	.	G	.	.	LowGQX	END=19431169	GT	./.
chr1	19431540	.	A	.	.	LowGQX	END=19431685	GT	./.
chr1	19432225	.	A	.	.	LowGQX	END=19432338	GT	./.
chr1	19433061	.	A	.	.	LowGQX	END=19433222	GT	./.
chr1	19433329	.	A	.	.	LowGQX	END=19433335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19433336	.	A	.	.	LowGQX	.	GT	./.
chr1	19433337	.	T	.	.	LowGQX	END=19433369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19433370	.	C	.	.	LowGQX	.	GT	./.
chr1	19433371	.	C	.	.	LowGQX	END=19433412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19433413	.	C	.	.	LowGQX	END=19433433	GT	./.
chr1	19433434	.	C	.	.	LowGQX	END=19433446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19433447	.	T	.	.	LowGQX	.	GT	./.
chr1	19433448	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19433449	.	A	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	19433450	.	A	.	.	LowGQX	END=19433453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19433454	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	19433455	.	G	.	.	LowGQX	END=19433462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19436588	.	A	.	.	LowGQX	END=19436719	GT	./.
chr1	19436867	.	A	.	.	LowGQX	END=19436966	GT	./.
chr1	19437172	.	T	.	.	LowGQX	END=19437331	GT	./.
chr1	19439016	.	A	.	.	LowGQX	END=19439363	GT	./.
chr1	19440191	.	A	.	.	LowGQX	END=19440323	GT	./.
chr1	19440372	.	C	.	.	LowGQX	END=19440566	GT	./.
chr1	19441303	.	A	.	.	LowGQX	END=19441338	GT	./.
chr1	19441339	.	A	.	.	LowGQX	END=19441426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19441427	.	C	.	10.71	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.05:60:0
chr1	19441428	.	A	.	.	LowGQX	END=19441445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	19441890	.	A	.	.	LowGQX	END=19442133	GT	./.
chr1	19443713	.	A	.	.	LowGQX	END=19443752	GT	./.
chr1	19443753	.	G	.	.	LowGQX	END=19443804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19443805	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	19443806	.	T	.	.	LowGQX	END=19443821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19443822	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	19443823	.	C	.	.	LowGQX	END=19443844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19443845	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	19443846	.	C	.	.	LowGQX	END=19443856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19443857	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	19443858	.	C	.	.	LowGQX	END=19443859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19443860	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	19443861	.	G	.	.	LowGQX	END=19443866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19443867	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	19443868	.	G	.	.	LowGQX	END=19443871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19443872	.	A	.	.	LowGQX	.	GT	./.
chr1	19443873	.	C	.	.	LowGQX	END=19443879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19443880	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	19443881	.	C	.	.	LowGQX	END=19443890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19443891	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	19443892	.	G	.	.	LowGQX	END=19443894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19443895	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	19443896	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19443897	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	19443898	.	A	.	.	LowGQX	END=19443902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19443903	.	G	.	.	LowGQX	END=19443907	GT	./.
chr1	19443908	.	A	.	.	LowGQX	END=19443909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19443910	.	T	.	.	LowGQX	.	GT	./.
chr1	19444311	.	A	.	.	LowGQX	END=19444410	GT	./.
chr1	19445359	.	A	.	.	LowGQX	END=19445458	GT	./.
chr1	19446049	.	A	.	.	LowGQX	END=19446133	GT	./.
chr1	19446134	.	G	.	.	LowGQX	END=19446197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19446672	.	A	.	.	LowGQX	END=19446680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19446681	.	T	.	.	LowGQX	END=19446844	GT	./.
chr1	19447681	.	A	.	.	LowGQX	END=19447728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19447729	.	A	.	.	LowGQX	.	GT	./.
chr1	19447730	.	G	.	.	LowGQX	END=19447736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	19447737	.	A	.	.	LowGQX	.	GT	./.
chr1	19447738	.	C	.	.	LowGQX	END=19447800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19447801	.	T	.	.	LowGQX	.	GT	./.
chr1	19447802	.	C	.	.	LowGQX	END=19447842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19447843	.	C	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	19447844	.	A	.	.	LowGQX	END=19447930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19448418	.	C	.	.	LowGQX	END=19448517	GT	./.
chr1	19449325	.	A	.	.	LowGQX	END=19449556	GT	./.
chr1	19451033	.	A	.	.	LowGQX	END=19451158	GT	./.
chr1	19451159	.	G	.	.	LowGQX	END=19451186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19452938	.	A	.	.	LowGQX	END=19453151	GT	./.
chr1	19454115	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19454116	.	C	.	.	LowGQX	.	GT	./.
chr1	19454117	.	C	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	19454118	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19454119	.	C	.	.	LowGQX	.	GT	./.
chr1	19454120	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19454121	.	C	.	.	LowGQX	END=19454122	GT	./.
chr1	19454123	.	T	.	.	LowGQX	END=19454126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19454127	.	G	.	.	LowGQX	.	GT	./.
chr1	19454128	.	A	.	.	LowGQX	END=19454129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19454130	.	G	.	.	LowGQX	.	GT	./.
chr1	19454131	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19454132	.	C	.	.	LowGQX	.	GT	./.
chr1	19454133	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19454134	.	T	.	.	LowGQX	END=19454135	GT	./.
chr1	19454136	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19454137	.	A	.	.	LowGQX	.	GT	./.
chr1	19454138	.	T	.	.	LowGQX	END=19454139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19454140	.	C	.	.	LowGQX	.	GT	./.
chr1	19454141	.	A	.	.	LowGQX	END=19454147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19454148	.	G	.	.	LowGQX	.	GT	./.
chr1	19454149	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19454150	.	G	.	.	LowGQX	END=19454234	GT	./.
chr1	19454235	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19454703	.	A	.	.	LowGQX	END=19454814	GT	./.
chr1	19455470	.	A	.	.	LowGQX	END=19455486	GT	./.
chr1	19455487	.	G	.	.	LowGQX	END=19455570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19464499	.	A	.	.	LowGQX	END=19464677	GT	./.
chr1	19465575	.	A	.	.	LowGQX	END=19465706	GT	./.
chr1	19465707	.	G	.	.	LowGQX	END=19465716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19467280	.	A	.	.	LowGQX	END=19467388	GT	./.
chr1	19467828	.	C	.	.	LowGQX	END=19467879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19467880	.	C	.	.	LowGQX	END=19468020	GT	./.
chr1	19468139	.	A	.	.	LowGQX	END=19468172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19468173	.	T	.	.	LowGQX	END=19468273	GT	./.
chr1	19470472	.	A	.	.	LowGQX	END=19470587	GT	./.
chr1	19471278	.	A	.	.	LowGQX	END=19471368	GT	./.
chr1	19471369	.	G	.	.	LowGQX	END=19471403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19472285	.	A	.	.	LowGQX	END=19472429	GT	./.
chr1	19472509	.	A	.	.	LowGQX	END=19472608	GT	./.
chr1	19473318	.	A	.	.	LowGQX	END=19473496	GT	./.
chr1	19474485	.	A	.	.	LowGQX	END=19474623	GT	./.
chr1	19475039	.	T	.	.	LowGQX	END=19475048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19475049	.	T	.	.	LowGQX	.	GT	./.
chr1	19475050	.	G	.	.	LowGQX	END=19475138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19476223	.	A	.	.	LowGQX	END=19476322	GT	./.
chr1	19477069	.	A	.	.	LowGQX	END=19477103	GT	./.
chr1	19477104	.	G	.	.	LowGQX	END=19477107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19477108	.	C	.	.	LowGQX	END=19477109	GT	./.
chr1	19477110	.	G	.	.	LowGQX	END=19477134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19477135	.	T	.	.	LowGQX	.	GT	./.
chr1	19477136	.	C	.	.	LowGQX	END=19477194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19477195	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	19477196	.	C	.	.	LowGQX	END=19477247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19477248	.	T	.	.	LowGQX	.	GT	./.
chr1	19477249	.	C	.	.	LowGQX	END=19477253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19477254	.	A	.	.	LowGQX	END=19477289	GT	./.
chr1	19477982	.	T	.	.	LowGQX	END=19478355	GT	./.
chr1	19478805	.	A	.	.	LowGQX	END=19478959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19478960	.	C	.	.	LowGQX	END=19478972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	19479793	.	A	.	.	LowGQX	END=19479998	GT	./.
chr1	19480260	.	A	.	.	LowGQX	END=19480263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480264	.	T	.	.	LowGQX	END=19480265	GT	./.
chr1	19480266	.	G	.	.	LowGQX	END=19480268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480269	.	T	.	.	LowGQX	.	GT	./.
chr1	19480270	.	T	.	.	LowGQX	END=19480275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480276	.	G	.	.	LowGQX	.	GT	./.
chr1	19480277	.	A	.	.	LowGQX	END=19480280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480281	.	G	.	.	LowGQX	.	GT	./.
chr1	19480282	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480283	.	C	.	.	LowGQX	.	GT	./.
chr1	19480284	.	T	.	.	LowGQX	END=19480285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480286	.	A	.	.	LowGQX	.	GT	./.
chr1	19480287	.	A	.	.	LowGQX	END=19480288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480289	.	C	.	.	LowGQX	.	GT	./.
chr1	19480290	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480291	.	C	.	.	LowGQX	.	GT	./.
chr1	19480292	.	C	.	.	LowGQX	END=19480297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480298	.	A	.	.	LowGQX	.	GT	./.
chr1	19480299	.	A	.	.	LowGQX	END=19480305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480306	.	T	.	.	LowGQX	.	GT	./.
chr1	19480307	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480308	.	T	.	.	LowGQX	.	GT	./.
chr1	19480309	.	C	.	.	LowGQX	END=19480313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480314	.	T	.	.	LowGQX	.	GT	./.
chr1	19480315	.	T	.	.	LowGQX	END=19480322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480323	.	A	.	.	LowGQX	.	GT	./.
chr1	19480324	.	C	.	.	LowGQX	END=19480325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480326	.	A	.	.	LowGQX	.	GT	./.
chr1	19480327	.	C	.	.	LowGQX	END=19480333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480334	.	C	.	.	LowGQX	.	GT	./.
chr1	19480335	.	A	.	.	LowGQX	END=19480338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480339	.	C	.	.	LowGQX	.	GT	./.
chr1	19480340	.	T	.	.	LowGQX	END=19480345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480346	.	T	.	.	LowGQX	.	GT	./.
chr1	19480347	.	T	.	.	LowGQX	END=19480348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480349	.	C	.	.	LowGQX	.	GT	./.
chr1	19480350	.	T	.	.	LowGQX	END=19480352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480353	.	A	.	.	LowGQX	.	GT	./.
chr1	19480354	.	C	.	.	LowGQX	END=19480355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480356	.	C	.	.	LowGQX	.	GT	./.
chr1	19480357	.	A	.	.	LowGQX	END=19480364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480365	.	A	.	.	LowGQX	.	GT	./.
chr1	19480366	.	A	.	.	LowGQX	END=19480369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480370	.	A	.	.	LowGQX	.	GT	./.
chr1	19480371	.	G	.	.	LowGQX	END=19480372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19480373	.	G	.	.	LowGQX	END=19480435	GT	./.
chr1	19481410	.	A	.	.	LowGQX	END=19481451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	19481452	.	T	.	.	LowGQX	END=19481545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19481546	.	G	.	.	LowGQX	END=19481572	GT	./.
chr1	19481933	.	A	.	.	LowGQX	END=19482017	GT	./.
chr1	19482018	.	G	.	.	LowGQX	END=19482088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19482089	.	A	.	.	LowGQX	END=19482152	GT	./.
chr1	19482153	.	G	.	.	LowGQX	END=19482164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19482763	.	A	.	.	LowGQX	END=19482855	GT	./.
chr1	19482856	.	G	.	.	LowGQX	END=19482919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19483259	.	A	.	.	LowGQX	END=19483421	GT	./.
chr1	19484307	.	A	.	.	LowGQX	END=19484348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19484349	.	C	.	.	LowGQX	.	GT	./.
chr1	19484350	.	C	.	.	LowGQX	END=19484354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19484355	.	G	.	.	LowGQX	.	GT	./.
chr1	19484356	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19484357	.	A	.	.	LowGQX	.	GT	./.
chr1	19484358	.	G	.	.	LowGQX	END=19484363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19484364	.	A	.	.	LowGQX	.	GT	./.
chr1	19484365	.	G	.	.	LowGQX	END=19484379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19484380	.	C	.	.	LowGQX	.	GT	./.
chr1	19484381	.	C	.	.	LowGQX	END=19484433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19484434	.	C	.	.	LowGQX	.	GT	./.
chr1	19484435	.	A	.	.	LowGQX	END=19484451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19484452	.	C	.	.	LowGQX	.	GT	./.
chr1	19484453	.	A	.	.	LowGQX	END=19484467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19484468	.	T	.	.	LowGQX	.	GT	./.
chr1	19484469	.	T	.	.	LowGQX	END=19484493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19486603	.	A	.	.	LowGQX	END=19486777	GT	./.
chr1	19487409	.	A	.	.	LowGQX	END=19487556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19487557	.	T	.	.	LowGQX	END=19487643	GT	./.
chr1	19488081	.	A	.	.	LowGQX	END=19488232	GT	./.
chr1	19488307	.	A	.	.	LowGQX	END=19488406	GT	./.
chr1	19488912	.	A	.	.	LowGQX	END=19489107	GT	./.
chr1	19490186	.	A	.	.	LowGQX	.	GT	./.
chr1	19490187	.	C	.	.	LowGQX	END=19490191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19490192	.	A	.	.	LowGQX	.	GT	./.
chr1	19490193	.	C	.	.	LowGQX	END=19490196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19490197	.	A	.	.	LowGQX	.	GT	./.
chr1	19490198	.	C	.	.	LowGQX	END=19490199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19490200	.	A	.	.	LowGQX	.	GT	./.
chr1	19490201	.	C	.	.	LowGQX	END=19490204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19490205	.	G	.	.	LowGQX	.	GT	./.
chr1	19490206	.	G	.	.	LowGQX	END=19490209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19490210	.	G	.	.	LowGQX	.	GT	./.
chr1	19490211	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19490212	.	A	.	.	LowGQX	.	GT	./.
chr1	19490213	.	T	.	.	LowGQX	END=19490214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19490215	.	A	.	.	LowGQX	END=19490217	GT	./.
chr1	19490218	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19490219	.	T	.	.	LowGQX	.	GT	./.
chr1	19490220	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19490221	.	C	.	.	LowGQX	END=19490339	GT	./.
chr1	19490745	.	A	.	.	LowGQX	END=19490937	GT	./.
chr1	19491291	.	A	.	.	LowGQX	END=19491493	GT	./.
chr1	19491741	.	A	.	.	LowGQX	END=19491845	GT	./.
chr1	19492148	.	A	.	.	LowGQX	END=19492253	GT	./.
chr1	19493514	.	A	.	.	LowGQX	END=19493727	GT	./.
chr1	19494519	.	A	.	.	LowGQX	END=19494680	GT	./.
chr1	19495927	.	A	.	.	LowGQX	.	GT	./.
chr1	19495928	.	C	.	.	LowGQX	END=19495942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19495943	.	T	.	.	LowGQX	.	GT	./.
chr1	19495944	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19495945	.	G	.	.	LowGQX	.	GT	./.
chr1	19495946	.	G	.	.	LowGQX	END=19495949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19495950	.	T	.	.	LowGQX	.	GT	./.
chr1	19495951	.	T	.	.	LowGQX	END=19495953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19495954	.	T	.	.	LowGQX	END=19495955	GT	./.
chr1	19495956	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19495957	.	G	.	.	LowGQX	END=19495959	GT	./.
chr1	19495960	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19495961	.	T	.	.	LowGQX	.	GT	./.
chr1	19495962	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19495963	.	A	.	.	LowGQX	END=19495964	GT	./.
chr1	19495965	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19495966	.	T	.	.	LowGQX	.	GT	./.
chr1	19495967	.	T	.	.	LowGQX	END=19495968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19495969	.	T	.	.	LowGQX	END=19495970	GT	./.
chr1	19495971	.	C	.	.	LowGQX	END=19495975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19495976	.	A	.	.	LowGQX	.	GT	./.
chr1	19495977	.	C	.	.	LowGQX	END=19495987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19495988	.	T	.	.	LowGQX	.	GT	./.
chr1	19495989	.	C	.	.	LowGQX	END=19495992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19495993	.	A	.	.	LowGQX	.	GT	./.
chr1	19495994	.	C	.	.	LowGQX	END=19495996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19495997	.	A	.	.	LowGQX	.	GT	./.
chr1	19495998	.	C	.	.	LowGQX	END=19496002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19496003	.	G	.	.	LowGQX	.	GT	./.
chr1	19496004	.	C	.	.	LowGQX	END=19496007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19496008	.	T	.	.	LowGQX	.	GT	./.
chr1	19496009	.	T	.	.	LowGQX	END=19496016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19496017	.	A	.	.	LowGQX	.	GT	./.
chr1	19496018	.	G	.	.	LowGQX	END=19496028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19497254	.	A	.	.	LowGQX	END=19497379	GT	./.
chr1	19499356	.	A	.	.	LowGQX	END=19499589	GT	./.
chr1	19499673	.	A	.	.	LowGQX	END=19499802	GT	./.
chr1	19499931	.	A	.	.	LowGQX	END=19500117	GT	./.
chr1	19500811	.	A	.	.	LowGQX	END=19500835	GT	./.
chr1	19500836	.	C	.	.	LowGQX	END=19500855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19500856	.	A	.	.	LowGQX	.	GT	./.
chr1	19500857	.	G	.	.	LowGQX	END=19500945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19500946	.	C	.	.	LowGQX	.	GT	./.
chr1	19500947	.	A	.	.	LowGQX	END=19500980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19501438	.	T	.	.	LowGQX	END=19501537	GT	./.
chr1	19503084	.	A	.	.	LowGQX	END=19503180	GT	./.
chr1	19503181	.	C	.	.	LowGQX	END=19503223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19503953	.	A	.	.	LowGQX	END=19504239	GT	./.
chr1	19505493	.	A	.	.	LowGQX	END=19505716	GT	./.
chr1	19510298	.	C	.	.	LowGQX	END=19510397	GT	./.
chr1	19510508	.	A	.	.	LowGQX	END=19510556	GT	./.
chr1	19510557	.	G	.	.	LowGQX	END=19510671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19511580	.	A	.	.	LowGQX	END=19511673	GT	./.
chr1	19511674	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511675	.	C	.	.	LowGQX	.	GT	./.
chr1	19511676	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511677	.	T	.	.	LowGQX	.	GT	./.
chr1	19511678	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511679	.	C	.	.	LowGQX	END=19511681	GT	./.
chr1	19511682	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511683	.	T	.	.	LowGQX	.	GT	./.
chr1	19511684	.	G	.	.	LowGQX	END=19511697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511698	.	A	.	.	LowGQX	.	GT	./.
chr1	19511699	.	G	.	.	LowGQX	END=19511703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511704	.	C	.	.	LowGQX	.	GT	./.
chr1	19511705	.	G	.	.	LowGQX	END=19511711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511712	.	C	.	.	LowGQX	END=19511713	GT	./.
chr1	19511714	.	G	.	.	LowGQX	END=19511715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511716	.	T	.	.	LowGQX	END=19511719	GT	./.
chr1	19511720	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511721	.	C	.	.	LowGQX	END=19511725	GT	./.
chr1	19511726	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511727	.	T	.	.	LowGQX	.	GT	./.
chr1	19511728	.	G	.	.	LowGQX	END=19511730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511731	.	A	.	.	LowGQX	.	GT	./.
chr1	19511732	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511733	.	A	.	.	LowGQX	END=19511737	GT	./.
chr1	19511738	.	G	.	.	LowGQX	END=19511740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511741	.	T	.	.	LowGQX	.	GT	./.
chr1	19511742	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511743	.	C	.	.	LowGQX	.	GT	./.
chr1	19511744	.	T	.	.	LowGQX	END=19511745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511746	.	A	.	.	LowGQX	END=19511749	GT	./.
chr1	19511750	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511751	.	A	.	.	LowGQX	.	GT	./.
chr1	19511752	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511753	.	T	.	.	LowGQX	.	GT	./.
chr1	19511754	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511755	.	C	.	.	LowGQX	END=19511756	GT	./.
chr1	19511757	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511758	.	C	.	.	LowGQX	END=19511763	GT	./.
chr1	19511764	.	A	.	.	LowGQX	END=19511767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511768	.	T	.	.	LowGQX	.	GT	./.
chr1	19511769	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511770	.	A	.	.	LowGQX	.	GT	./.
chr1	19511771	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511772	.	T	.	.	LowGQX	.	GT	./.
chr1	19511773	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511774	.	T	.	.	LowGQX	END=19511777	GT	./.
chr1	19511778	.	C	.	.	LowGQX	END=19511779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511780	.	T	.	.	LowGQX	.	GT	./.
chr1	19511781	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19511782	.	T	.	.	LowGQX	.	GT	./.
chr1	19513032	.	A	.	.	LowGQX	END=19513153	GT	./.
chr1	19513656	.	A	.	.	LowGQX	END=19513728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19513729	.	T	.	.	LowGQX	END=19513797	GT	./.
chr1	19513933	.	A	.	.	LowGQX	END=19514036	GT	./.
chr1	19518680	.	A	.	.	LowGQX	END=19518836	GT	./.
chr1	19518837	.	G	.	.	LowGQX	END=19518874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19518955	.	G	.	.	LowGQX	END=19518972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19518973	.	A	.	.	LowGQX	.	GT	./.
chr1	19518974	.	C	.	.	LowGQX	END=19518982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19518983	.	C	.	.	LowGQX	.	GT	./.
chr1	19518984	.	A	.	.	LowGQX	END=19518986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19518987	.	C	.	.	LowGQX	END=19519006	GT	./.
chr1	19519007	.	C	.	.	LowGQX	END=19519035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19519036	.	T	.	.	LowGQX	.	GT	./.
chr1	19519037	.	G	.	.	LowGQX	END=19519054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19519925	.	A	.	.	LowGQX	END=19520053	GT	./.
chr1	19523633	.	A	.	.	LowGQX	END=19523647	GT	./.
chr1	19523648	.	A	.	.	LowGQX	END=19523664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19523665	.	T	.	.	LowGQX	.	GT	./.
chr1	19523666	.	C	.	.	LowGQX	END=19523695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19523696	.	T	.	.	LowGQX	.	GT	./.
chr1	19523697	.	T	.	.	LowGQX	END=19523761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19524162	.	A	.	.	LowGQX	END=19524257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19524258	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	19524259	.	G	.	.	LowGQX	END=19524307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19524439	.	A	.	.	LowGQX	END=19524447	GT	./.
chr1	19524448	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19524449	.	T	.	.	LowGQX	END=19524450	GT	./.
chr1	19524451	.	A	.	.	LowGQX	END=19524457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19524458	.	G	.	.	LowGQX	.	GT	./.
chr1	19524459	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19524460	.	C	.	.	LowGQX	.	GT	./.
chr1	19524461	.	A	.	.	LowGQX	END=19524462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19524463	.	G	.	.	LowGQX	END=19524464	GT	./.
chr1	19524465	.	T	.	.	LowGQX	END=19524470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19524471	.	C	.	.	LowGQX	.	GT	./.
chr1	19524472	.	T	.	.	LowGQX	END=19524477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19524478	.	C	.	.	LowGQX	.	GT	./.
chr1	19524479	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19524480	.	C	.	.	LowGQX	END=19524483	GT	./.
chr1	19524484	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19524485	.	T	.	.	LowGQX	.	GT	./.
chr1	19524486	.	T	.	.	LowGQX	END=19524497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19524498	.	C	.	.	LowGQX	END=19524499	GT	./.
chr1	19524500	.	G	.	.	LowGQX	END=19524506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19524507	.	G	.	.	LowGQX	.	GT	./.
chr1	19524508	.	A	.	.	LowGQX	END=19524510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19524511	.	T	.	.	LowGQX	.	GT	./.
chr1	19524512	.	G	.	.	LowGQX	END=19524517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19524518	.	G	.	.	LowGQX	.	GT	./.
chr1	19524519	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19524520	.	C	.	.	LowGQX	.	GT	./.
chr1	19524521	.	T	.	.	LowGQX	END=19524528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19524529	.	A	.	.	LowGQX	END=19524530	GT	./.
chr1	19524531	.	T	.	.	LowGQX	END=19524536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19524537	.	C	.	.	LowGQX	.	GT	./.
chr1	19524538	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19524539	.	T	.	.	LowGQX	END=19524544	GT	./.
chr1	19524545	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19525033	.	A	.	.	LowGQX	END=19525035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19525036	.	A	.	.	LowGQX	END=19525037	GT	./.
chr1	19525038	.	A	.	.	LowGQX	END=19525047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19525048	.	C	.	.	LowGQX	.	GT	./.
chr1	19525049	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19525050	.	G	.	.	LowGQX	END=19525176	GT	./.
chr1	19525291	.	A	.	.	LowGQX	END=19525424	GT	./.
chr1	19526143	.	A	.	.	LowGQX	END=19526302	GT	./.
chr1	19528210	.	A	.	.	LowGQX	END=19528311	GT	./.
chr1	19536554	.	C	.	.	LowGQX	END=19536744	GT	./.
chr1	19545795	.	C	.	.	LowGQX	END=19545978	GT	./.
chr1	19546061	.	A	.	.	LowGQX	END=19546157	GT	./.
chr1	19546158	.	G	.	.	LowGQX	END=19546194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19547251	.	G	.	.	LowGQX	END=19547350	GT	./.
chr1	19549081	.	G	.	.	LowGQX	END=19549330	GT	./.
chr1	19549888	.	A	.	.	LowGQX	END=19549889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19549890	.	C	.	.	LowGQX	END=19549891	GT	./.
chr1	19549892	.	C	.	.	LowGQX	END=19549895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19549896	.	C	.	.	LowGQX	.	GT	./.
chr1	19549897	.	C	.	.	LowGQX	END=19549920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19549921	.	A	.	.	LowGQX	.	GT	./.
chr1	19549922	.	C	.	.	LowGQX	END=19549931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19549932	.	G	.	.	LowGQX	.	GT	./.
chr1	19549933	.	G	.	.	LowGQX	END=19549943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19549944	.	C	.	.	LowGQX	.	GT	./.
chr1	19549945	.	A	.	.	LowGQX	END=19549959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19549960	.	A	.	.	LowGQX	.	GT	./.
chr1	19549961	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19549962	.	A	.	.	LowGQX	END=19549963	GT	./.
chr1	19549964	.	G	.	.	LowGQX	END=19549966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19549967	.	C	.	.	LowGQX	.	GT	./.
chr1	19549968	.	A	.	.	LowGQX	END=19549970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19549971	.	G	.	.	LowGQX	.	GT	./.
chr1	19549972	.	A	.	.	LowGQX	END=19549987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19549988	.	A	.	.	LowGQX	.	GT	./.
chr1	19549989	.	G	.	.	LowGQX	END=19549990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19549991	.	T	.	.	LowGQX	.	GT	./.
chr1	19549992	.	G	.	.	LowGQX	END=19549993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19549994	.	C	.	.	LowGQX	.	GT	./.
chr1	19549995	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19549996	.	A	.	.	LowGQX	.	GT	./.
chr1	19549997	.	T	.	.	LowGQX	END=19549998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19549999	.	A	.	.	LowGQX	END=19550003	GT	./.
chr1	19550004	.	G	.	.	LowGQX	END=19550005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19550006	.	G	.	.	LowGQX	END=19550013	GT	./.
chr1	19550014	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19550015	.	G	.	.	LowGQX	.	GT	./.
chr1	19550016	.	C	.	.	LowGQX	END=19550018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19550019	.	G	.	.	LowGQX	END=19550020	GT	./.
chr1	19550021	.	C	.	.	LowGQX	END=19550022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19550023	.	G	.	.	LowGQX	END=19550024	GT	./.
chr1	19550025	.	G	.	.	LowGQX	END=19550033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19550034	.	C	.	.	LowGQX	.	GT	./.
chr1	19550035	.	A	.	.	LowGQX	END=19550040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19550041	.	G	.	.	LowGQX	.	GT	./.
chr1	19550042	.	C	.	.	LowGQX	END=19550044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19550045	.	G	.	.	LowGQX	.	GT	./.
chr1	19550046	.	C	.	.	LowGQX	END=19550048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19550049	.	G	.	.	LowGQX	.	GT	./.
chr1	19550050	.	T	.	.	LowGQX	END=19550052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19550053	.	G	.	.	LowGQX	.	GT	./.
chr1	19550054	.	G	.	.	LowGQX	END=19550055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19550056	.	T	.	.	LowGQX	END=19550057	GT	./.
chr1	19550058	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19550059	.	A	.	.	LowGQX	.	GT	./.
chr1	19550060	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19550061	.	G	.	.	LowGQX	.	GT	./.
chr1	19550062	.	C	.	.	LowGQX	END=19550065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19553805	.	A	.	.	LowGQX	END=19553933	GT	./.
chr1	19553934	.	G	.	.	LowGQX	END=19553946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19557336	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19557337	.	C	.	.	LowGQX	.	GT	./.
chr1	19557338	.	C	.	.	LowGQX	END=19557339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19557340	.	T	.	.	LowGQX	.	GT	./.
chr1	19557341	.	T	.	.	LowGQX	END=19557342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19557343	.	G	.	.	LowGQX	END=19557344	GT	./.
chr1	19557345	.	A	.	.	LowGQX	END=19557357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19557358	.	A	.	.	LowGQX	.	GT	./.
chr1	19557359	.	C	.	.	LowGQX	END=19557372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19557373	.	C	.	.	LowGQX	.	GT	./.
chr1	19557374	.	T	.	.	LowGQX	END=19557407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19557408	.	A	.	.	LowGQX	.	GT	./.
chr1	19557409	.	G	.	.	LowGQX	END=19557413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19557414	.	T	.	.	LowGQX	.	GT	./.
chr1	19557415	.	G	.	.	LowGQX	END=19557416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19557417	.	A	.	.	LowGQX	END=19557459	GT	./.
chr1	19557753	.	A	.	.	LowGQX	END=19557942	GT	./.
chr1	19559116	.	A	.	.	LowGQX	END=19559269	GT	./.
chr1	19559428	.	A	.	.	LowGQX	END=19559631	GT	./.
chr1	19561622	.	A	.	.	LowGQX	END=19561748	GT	./.
chr1	19563634	.	A	.	.	LowGQX	END=19563672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	19563673	.	C	A	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr1	19563674	.	T	.	.	LowGQX	END=19563734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	19564509	.	A	.	.	LowGQX	END=19564635	GT	./.
chr1	19565271	.	C	.	.	LowGQX	END=19565370	GT	./.
chr1	19565711	.	T	.	.	LowGQX	END=19565810	GT	./.
chr1	19566280	.	G	.	.	LowGQX	END=19566291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19566292	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	19566293	.	C	.	.	LowGQX	END=19566295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	19566296	.	T	C	52.84	LowGQ;LowGQX	DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=17.61;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:6.02:84,6,0:60:6:1.000
chr1	19566297	.	G	.	.	LowGQX	END=19566314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	19566315	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	19566316	.	G	.	.	LowGQX	END=19566403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19566404	.	G	.	.	LowGQX	.	GT	./.
chr1	19566405	.	G	.	.	LowGQX	END=19566418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19566419	.	G	.	.	LowGQX	.	GT	./.
chr1	19566420	.	G	.	.	LowGQX	END=19566438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19566439	.	A	.	.	LowGQX	.	GT	./.
chr1	19566440	.	C	.	.	LowGQX	END=19566443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19566444	.	G	.	.	LowGQX	.	GT	./.
chr1	19566445	.	G	.	.	LowGQX	END=19566447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19566448	.	T	.	.	LowGQX	.	GT	./.
chr1	19566449	.	G	.	.	LowGQX	END=19566454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19566455	.	C	.	.	LowGQX	END=19566456	GT	./.
chr1	19566457	.	C	.	.	LowGQX	END=19566460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19566461	.	C	.	.	LowGQX	END=19566462	GT	./.
chr1	19566463	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19566464	.	A	.	.	LowGQX	.	GT	./.
chr1	19566465	.	T	.	.	LowGQX	END=19566466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19566467	.	C	.	.	LowGQX	.	GT	./.
chr1	19566468	.	T	.	.	LowGQX	END=19566472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19566473	.	C	.	.	LowGQX	.	GT	./.
chr1	19566474	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19566475	.	A	.	.	LowGQX	.	GT	./.
chr1	19566476	.	G	.	.	LowGQX	END=19566477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19566478	.	G	.	.	LowGQX	.	GT	./.
chr1	19566479	.	A	.	.	LowGQX	END=19566481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19566789	.	A	.	.	LowGQX	END=19566863	GT	./.
chr1	19566864	.	G	.	.	LowGQX	END=19566880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19566881	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	19566882	.	T	.	.	LowGQX	END=19566887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19566888	.	A	.	.	LowGQX	.	GT	./.
chr1	19566889	.	C	.	.	LowGQX	END=19566942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19567508	.	A	.	.	LowGQX	END=19567638	GT	./.
chr1	19568837	.	A	.	.	LowGQX	.	GT	./.
chr1	19568838	.	C	.	.	LowGQX	END=19568852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19568853	.	T	.	.	LowGQX	.	GT	./.
chr1	19568854	.	T	.	.	LowGQX	END=19568868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19568869	.	T	.	.	LowGQX	.	GT	./.
chr1	19568870	.	G	.	.	LowGQX	END=19568969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19570105	.	T	.	.	LowGQX	END=19570204	GT	./.
chr1	19570427	.	G	.	.	LowGQX	END=19570526	GT	./.
chr1	19571391	.	T	.	.	LowGQX	END=19571526	GT	./.
chr1	19577907	.	A	.	.	LowGQX	END=19578006	GT	./.
chr1	19578294	.	G	.	.	LowGQX	END=19578393	GT	./.
chr1	19581196	.	T	.	.	LowGQX	END=19581201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19581202	.	A	.	.	LowGQX	.	GT	./.
chr1	19581203	.	G	.	.	LowGQX	END=19581204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19581205	.	G	.	.	LowGQX	.	GT	./.
chr1	19581206	.	G	.	.	LowGQX	END=19581216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19581217	.	A	.	.	LowGQX	END=19581235	GT	./.
chr1	19581236	.	A	.	.	LowGQX	END=19581240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19581241	.	T	.	.	LowGQX	END=19581242	GT	./.
chr1	19581243	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19581244	.	C	.	.	LowGQX	END=19581247	GT	./.
chr1	19581248	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19581249	.	C	.	.	LowGQX	END=19581254	GT	./.
chr1	19581255	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19581256	.	C	.	.	LowGQX	.	GT	./.
chr1	19581257	.	T	.	.	LowGQX	END=19581258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19581259	.	C	.	.	LowGQX	.	GT	./.
chr1	19581260	.	T	.	.	LowGQX	END=19581264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19581265	.	G	.	.	LowGQX	.	GT	./.
chr1	19581266	.	T	.	.	LowGQX	END=19581268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19581269	.	T	.	.	LowGQX	.	GT	./.
chr1	19581270	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19581271	.	A	.	.	LowGQX	.	GT	./.
chr1	19581272	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19581273	.	T	.	.	LowGQX	END=19581278	GT	./.
chr1	19581279	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19581280	.	C	.	.	LowGQX	END=19581281	GT	./.
chr1	19581282	.	T	.	.	LowGQX	END=19581311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19581312	.	T	.	.	LowGQX	.	GT	./.
chr1	19581313	.	G	.	.	LowGQX	END=19581355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19582440	.	A	.	.	LowGQX	END=19582547	GT	./.
chr1	19583549	.	G	.	.	LowGQX	END=19583648	GT	./.
chr1	19583932	.	C	.	.	LowGQX	END=19584031	GT	./.
chr1	19584325	.	A	.	.	LowGQX	END=19584480	GT	./.
chr1	19584960	.	C	.	.	LowGQX	END=19585059	GT	./.
chr1	19585173	.	A	.	.	LowGQX	END=19585326	GT	./.
chr1	19593792	.	G	.	.	PASS	END=19593813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	19593814	.	A	.	.	PASS	END=19593918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:57
chr1	19593919	.	T	.	.	PASS	END=19593947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:56
chr1	19593948	.	T	.	.	PASS	END=19593957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:55
chr1	19595064	.	A	.	.	PASS	END=19595136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	19595137	.	C	T	1649.43	PASS	BaseQRankSum=3.209;DP=144;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=19.1330;MQ=60;MQ0=0;MQRankSum=-1.016;QD=11.45;ReadPosRankSum=1.540;SB=-1079.74	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:66,76:144:99:1679,0,1615:60:99:0.535
chr1	19595138	.	G	.	.	PASS	END=19595195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	19595196	.	C	.	.	PASS	END=19595197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	19595765	.	C	.	.	PASS	END=19595780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	19595781	.	T	.	.	PASS	END=19595827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	19595828	.	C	.	.	PASS	END=19595864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:59
chr1	19595865	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:112:99:59
chr1	19596075	.	A	.	.	PASS	END=19596123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:59
chr1	19596124	.	C	T	1520.54	PASS	BaseQRankSum=3.246;DP=138;Dels=0.00;FS=6.903;HRun=0;HaplotypeScore=6.6709;MQ=59;MQ0=0;MQRankSum=1.505;QD=11.02;ReadPosRankSum=0.518;SB=-552.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:76,61:138:99:1551,0,1941:59:99:0.445
chr1	19596125	.	A	.	.	PASS	END=19596155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:59
chr1	19596156	.	G	T	1355.37	PASS	BaseQRankSum=1.433;DP=132;Dels=0.00;FS=5.887;HRun=1;HaplotypeScore=10.5108;MQ=59;MQ0=0;MQRankSum=1.590;QD=10.27;ReadPosRankSum=0.781;SB=-477.87	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:75,57:132:99:1385,0,1873:59:99:0.432
chr1	19596157	.	G	.	.	PASS	END=19596173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:59
chr1	19596174	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:101:99:60
chr1	19596943	.	A	.	.	PASS	END=19596964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	19596965	.	T	.	.	PASS	END=19597051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	19597240	.	A	.	.	PASS	END=19597317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:58
chr1	19597318	.	A	.	.	PASS	END=19597390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	19597391	.	A	.	.	PASS	END=19597429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	19600354	.	C	.	.	PASS	END=19600401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	19600402	.	G	.	.	PASS	END=19600405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	19600406	.	C	T	1697.43	PASS	BaseQRankSum=2.878;DP=216;Dels=0.00;FS=6.341;HRun=1;HaplotypeScore=16.3614;MQ=60;MQ0=0;MQRankSum=-0.084;QD=7.86;ReadPosRankSum=-1.441;SB=-678.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:139,77:216:99:1727,0,3169:60:99:0.356
chr1	19600407	.	G	.	.	PASS	END=19600474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:52
chr1	19600475	.	T	.	.	PASS	END=19600532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:44
chr1	19600533	.	C	.	.	PASS	END=19600568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:39
chr1	19609223	.	G	.	.	PASS	END=19609253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:95:58
chr1	19609254	.	T	C	830.93	PASS	BaseQRankSum=-0.052;DP=60;Dels=0.00;FS=7.729;HRun=0;HaplotypeScore=3.7877;MQ=58;MQ0=0;MQRankSum=0.067;QD=13.85;ReadPosRankSum=0.664;SB=-317.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,34:60:99:861,0,712:58:99:0.567
chr1	19609255	.	A	.	.	PASS	END=19609347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:81:51
chr1	19609348	.	G	.	.	PASS	END=19609372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:48
chr1	19609373	.	T	.	.	PASS	END=19609387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:47
chr1	19609388	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:75:46
chr1	19610488	.	A	.	.	PASS	END=19610540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	19610541	.	G	.	.	PASS	END=19610621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr1	19611178	.	A	.	.	PASS	END=19611194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:90:60
chr1	19611195	.	T	.	.	PASS	END=19611214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	19611215	.	G	.	.	PASS	END=19611240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	19611241	.	T	C	1131.10	PASS	BaseQRankSum=0.530;DP=104;Dels=0.00;FS=3.933;HRun=1;HaplotypeScore=5.6815;MQ=60;MQ0=0;MQRankSum=0.179;QD=10.88;ReadPosRankSum=0.342;SB=-688.96	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:54,50:104:99:1161,0,1368:60:99:0.481
chr1	19611242	.	C	.	.	PASS	END=19611281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	19611510	.	A	.	.	PASS	END=19611572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	19611573	.	C	.	.	PASS	END=19611609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	19611610	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:74:99:60
chr1	19612380	.	A	.	.	PASS	END=19612412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	19612413	.	C	.	.	PASS	END=19612476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:59
chr1	19612477	.	C	T	1336.88	PASS	BaseQRankSum=2.401;DP=127;Dels=0.00;FS=0.688;HRun=0;HaplotypeScore=16.2559;MQ=59;MQ0=0;MQRankSum=1.413;QD=10.53;ReadPosRankSum=-0.474;SB=-745.18	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:67,59:127:99:1367,0,1638:59:99:0.468
chr1	19612478	.	G	.	.	PASS	END=19612488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:59
chr1	19612677	.	A	.	.	PASS	END=19612850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:56
chr1	19612851	.	T	.	.	PASS	END=19612868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	19614988	.	A	.	.	PASS	END=19615017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	19615018	.	C	.	.	PASS	END=19615099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:57
chr1	19615100	.	A	.	.	PASS	END=19615120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:54
chr1	19615121	.	C	.	.	PASS	END=19615160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:49
chr1	19615161	.	C	.	.	PASS	END=19615167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:48
chr1	19615168	.	C	.	.	PASS	END=19615187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:90:42
chr1	19615188	.	A	.	.	PASS	END=19615205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:39
chr1	19630668	.	A	.	.	PASS	END=19630711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	19630712	.	G	.	.	PASS	END=19630807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	19630808	.	C	.	.	PASS	END=19630844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:59
chr1	19630845	.	G	.	.	PASS	END=19630858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:94:59
chr1	19630859	.	T	.	.	PASS	END=19630877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:58
chr1	19630878	.	A	.	.	PASS	END=19630889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:96:58
chr1	19630890	.	A	.	.	PASS	END=19630917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:57
chr1	19630918	.	T	.	.	PASS	END=19630925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:56
chr1	19630926	.	G	.	.	PASS	END=19630929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:56
chr1	19630930	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:36:57
chr1	19630931	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:6:57
chr1	19632461	.	C	.	.	PASS	END=19632492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	19632493	.	A	.	.	PASS	END=19632530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	19632531	.	T	.	.	PASS	END=19632631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	19632632	.	C	.	.	PASS	END=19632654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	19632655	.	A	.	.	PASS	END=19632676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	19632677	.	C	.	.	PASS	END=19632692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	19633445	.	A	.	.	PASS	END=19633458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	19633459	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:44:3:60
chr1	19633460	.	C	.	.	PASS	END=19633463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	19633464	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:53:3:60
chr1	19633465	.	G	.	.	PASS	END=19633482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:84:60
chr1	19633483	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:73:60
chr1	19633484	.	C	.	.	PASS	END=19633510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	19633511	.	T	.	.	PASS	END=19633613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	19633614	.	C	.	.	PASS	END=19633646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	19633757	.	C	.	.	PASS	END=19633786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	19633787	.	G	.	.	PASS	END=19633899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	19633900	.	A	.	.	PASS	END=19633915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	19633916	.	G	.	.	PASS	END=19633929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	19633930	.	A	.	.	PASS	END=19633942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	19633943	.	C	.	.	PASS	END=19633955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	19634566	.	G	.	.	PASS	END=19634567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	19634568	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:36:60
chr1	19634569	.	A	.	.	PASS	END=19634578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	19634579	.	G	.	.	PASS	END=19634588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	19634589	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:48:60
chr1	19634590	.	A	.	.	PASS	END=19634602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	19634603	.	G	.	.	PASS	END=19634613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	19634614	.	G	.	.	PASS	END=19634637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:94:60
chr1	19634638	.	G	.	.	PASS	END=19634650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	19634651	.	C	.	.	PASS	END=19634687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	19634688	.	G	.	.	PASS	END=19634711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	19634712	.	T	.	.	PASS	END=19634795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	19634796	.	A	.	.	PASS	END=19634807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	19634898	.	G	.	.	PASS	END=19634959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	19634960	.	G	.	.	PASS	END=19635037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	19635038	.	G	.	.	PASS	END=19635088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	19635089	.	G	.	.	PASS	END=19635155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	19635156	.	G	.	.	PASS	END=19635177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	19635178	.	A	.	.	PASS	END=19635187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	19638270	.	G	.	.	PASS	END=19638279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	19638280	.	G	.	.	PASS	END=19638301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	19638302	.	G	.	.	PASS	END=19638308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	19638309	.	A	G	3322.61	PASS	DP=107;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=6.6284;MQ=60;MQ0=0;QD=31.05;SB=-1221.74	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,107:107:99:3323,253,0:60:99:1.000
chr1	19638310	.	G	.	.	PASS	END=19638347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	19638348	.	G	.	.	PASS	END=19638430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	19638431	.	A	.	.	PASS	END=19638463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	19638464	.	T	.	.	PASS	END=19638488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	19638489	.	T	.	.	PASS	END=19638498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	19638499	.	C	.	.	PASS	END=19638513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	19638514	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:63:60
chr1	19638515	.	G	.	.	PASS	END=19638529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	19638530	.	A	.	.	PASS	END=19638537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	19638538	.	C	.	.	PASS	END=19638563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	19638564	.	G	.	.	PASS	END=19638567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	19638568	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	19638569	.	G	.	.	PASS	END=19638574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	19638575	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	19638576	.	G	.	.	PASS	END=19638578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	19638579	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:1:60
chr1	19638580	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:27:60
chr1	19638581	.	G	.	.	LowGQX	END=19638582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	19638583	.	G	.	.	LowGQX	END=19638596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19638597	.	C	.	.	LowGQX	.	GT	./.
chr1	19638598	.	G	.	.	LowGQX	END=19638601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19638602	.	G	.	.	LowGQX	.	GT	./.
chr1	19638603	.	A	.	.	LowGQX	END=19638621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19638622	.	A	.	.	LowGQX	END=19638669	GT	./.
chr1	19644170	.	C	.	.	LowGQX	END=19644329	GT	./.
chr1	19644330	.	C	.	.	LowGQX	END=19644337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19651125	.	A	.	.	LowGQX	END=19651258	GT	./.
chr1	19651983	.	T	.	.	LowGQX	END=19652082	GT	./.
chr1	19652737	.	A	.	.	LowGQX	END=19652883	GT	./.
chr1	19653022	.	C	.	.	LowGQX	END=19653121	GT	./.
chr1	19653708	.	C	.	.	LowGQX	END=19653877	GT	./.
chr1	19653878	.	G	.	.	LowGQX	END=19653908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19654039	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19654040	.	T	.	.	LowGQX	.	GT	./.
chr1	19654041	.	C	.	.	LowGQX	END=19654043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19654044	.	T	.	.	LowGQX	.	GT	./.
chr1	19654045	.	C	.	.	LowGQX	END=19654061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19654062	.	C	.	.	LowGQX	.	GT	./.
chr1	19654063	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19654064	.	G	.	.	LowGQX	.	GT	./.
chr1	19654065	.	T	.	.	LowGQX	END=19654116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19654117	.	T	.	.	LowGQX	END=19654126	GT	./.
chr1	19654127	.	C	.	.	LowGQX	END=19654138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19654992	.	C	.	.	LowGQX	END=19655136	GT	./.
chr1	19655137	.	A	.	.	LowGQX	END=19655151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19666018	.	A	.	.	LowGQX	END=19666117	GT	./.
chr1	19669255	.	C	.	.	LowGQX	END=19669358	GT	./.
chr1	19670841	.	T	.	.	LowGQX	END=19670940	GT	./.
chr1	19671664	.	G	.	.	LowGQX	END=19671763	GT	./.
chr1	19683077	.	T	.	.	LowGQX	END=19683203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19683204	.	G	.	.	LowGQX	.	GT	./.
chr1	19683205	.	G	.	.	LowGQX	END=19683207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19683208	.	G	.	.	LowGQX	END=19683247	GT	./.
chr1	19683914	.	A	.	.	LowGQX	END=19684059	GT	./.
chr1	19705032	.	A	.	.	LowGQX	END=19705130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19705131	.	T	.	.	LowGQX	.	GT	./.
chr1	19705132	.	G	.	.	LowGQX	END=19705149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19711997	.	A	.	.	LowGQX	END=19712016	GT	./.
chr1	19712017	.	C	.	.	LowGQX	END=19712026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19712027	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	19712028	.	A	.	.	LowGQX	END=19712047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19712048	.	C	.	.	LowGQX	.	GT	./.
chr1	19712049	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19712050	.	A	.	.	LowGQX	.	GT	./.
chr1	19712051	.	C	.	.	LowGQX	END=19712081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19712082	.	G	.	.	LowGQX	.	GT	./.
chr1	19712083	.	T	.	.	LowGQX	END=19712109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19712110	.	A	.	.	LowGQX	.	GT	./.
chr1	19712111	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19712112	.	A	.	.	LowGQX	END=19712113	GT	./.
chr1	19712114	.	T	.	.	LowGQX	END=19712118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19712119	.	A	.	.	LowGQX	.	GT	./.
chr1	19712120	.	C	.	.	LowGQX	END=19712122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19712170	.	A	.	.	LowGQX	END=19712198	GT	./.
chr1	19712199	.	A	.	.	LowGQX	END=19712204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19712205	.	T	.	.	LowGQX	END=19712206	GT	./.
chr1	19712207	.	G	.	.	LowGQX	END=19712223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19712224	.	C	.	.	LowGQX	.	GT	./.
chr1	19712225	.	T	.	.	LowGQX	END=19712229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19712230	.	C	.	.	LowGQX	.	GT	./.
chr1	19712231	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19712232	.	G	.	.	LowGQX	END=19712233	GT	./.
chr1	19712234	.	G	.	.	LowGQX	END=19712242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19712243	.	C	.	.	LowGQX	.	GT	./.
chr1	19712244	.	A	.	.	LowGQX	END=19712269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19746150	.	C	.	.	LowGQX	END=19746249	GT	./.
chr1	19775318	.	T	.	.	LowGQX	END=19775398	GT	./.
chr1	19775399	.	G	.	.	LowGQX	END=19775417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19810683	.	C	.	.	LowGQX	END=19810687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19810688	.	T	.	.	LowGQX	.	GT	./.
chr1	19810689	.	C	.	.	LowGQX	END=19810717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19810718	.	A	.	.	LowGQX	.	GT	./.
chr1	19810719	.	C	.	.	LowGQX	END=19810720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19810721	.	C	.	.	LowGQX	END=19810892	GT	./.
chr1	19811822	.	T	.	.	LowGQX	END=19811981	GT	./.
chr1	19923462	.	T	.	.	LowGQX	END=19923535	GT	./.
chr1	19923536	.	G	.	.	LowGQX	END=19923572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19923573	.	C	.	.	LowGQX	.	GT	./.
chr1	19923574	.	G	.	.	LowGQX	END=19923581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19923582	.	G	.	.	LowGQX	.	GT	./.
chr1	19923583	.	C	.	.	LowGQX	END=19923585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19923586	.	A	.	.	LowGQX	.	GT	./.
chr1	19923587	.	T	.	.	LowGQX	END=19923596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19923597	.	A	.	.	LowGQX	.	GT	./.
chr1	19923598	.	A	.	.	LowGQX	END=19923599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19923600	.	A	.	.	LowGQX	.	GT	./.
chr1	19923601	.	T	.	.	LowGQX	END=19923633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19923634	.	C	.	.	LowGQX	.	GT	./.
chr1	19923635	.	C	.	.	LowGQX	END=19923637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19923638	.	T	.	.	LowGQX	END=19923639	GT	./.
chr1	19923640	.	C	.	.	LowGQX	END=19923642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19923643	.	A	.	.	LowGQX	.	GT	./.
chr1	19923644	.	G	.	.	LowGQX	END=19923645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19923646	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	19923647	.	G	.	.	LowGQX	END=19923648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19923649	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	19923650	.	G	.	.	LowGQX	END=19923652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19923653	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	19923654	.	C	.	.	LowGQX	END=19923671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19923672	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	19923673	.	A	.	.	LowGQX	.	GT	./.
chr1	19923674	.	G	.	.	LowGQX	END=19923677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19927404	.	A	.	.	LowGQX	END=19927503	GT	./.
chr1	19934608	.	A	.	.	LowGQX	END=19935117	GT	./.
chr1	19948568	.	A	.	.	LowGQX	END=19948593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	19948594	.	G	A	9.30	LowGQX	BaseQRankSum=-1.026;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=1.026;QD=2.32;ReadPosRankSum=0.000;SB=-30.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:38.75:39,0,39:60:9:0.500
chr1	19948595	.	T	.	.	LowGQX	END=19948633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	19948634	.	C	G	9.30	LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr1	19948635	.	T	.	.	LowGQX	END=19948667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	19949966	.	A	.	.	LowGQX	END=19949982	GT	./.
chr1	19949983	.	T	.	.	LowGQX	END=19949993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19949994	.	T	.	.	LowGQX	.	GT	./.
chr1	19949995	.	C	.	.	LowGQX	END=19950008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19950009	.	G	.	.	LowGQX	.	GT	./.
chr1	19950010	.	G	.	.	LowGQX	END=19950079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19951885	.	G	.	.	LowGQX	END=19952086	GT	./.
chr1	19952839	.	T	.	.	LowGQX	END=19952938	GT	./.
chr1	19969799	.	A	.	.	LowGQX	END=19969822	GT	./.
chr1	19969823	.	G	.	.	LowGQX	END=19969898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19972436	.	G	.	.	LowGQX	END=19972535	GT	./.
chr1	19981503	.	A	.	.	LowGQX	END=19981695	GT	./.
chr1	19981815	.	A	.	.	LowGQX	END=19981930	GT	./.
chr1	19983357	.	A	.	.	LowGQX	END=19983361	GT	./.
chr1	19983362	.	A	.	.	LowGQX	END=19983408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19983409	.	G	.	.	LowGQX	.	GT	./.
chr1	19983410	.	G	.	.	LowGQX	END=19983454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	19983455	.	C	T	3.07	LowGQX;LowQD;SB	BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.02;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.11:30,0,39:60:3:0.333
chr1	19983456	.	C	.	.	LowGQX	END=19983469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19983470	.	C	.	.	LowGQX	.	GT	./.
chr1	19983471	.	T	.	.	LowGQX	END=19983501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19983502	.	G	.	.	LowGQX	.	GT	./.
chr1	19983503	.	G	.	.	LowGQX	END=19983509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	19983510	.	A	.	.	LowGQX	END=19983624	GT	./.
chr1	19992234	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	19992235	.	C	.	.	PASS	END=19992236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	19992237	.	C	.	.	LowGQX	END=19992238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	19992239	.	C	.	.	PASS	END=19992249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	19992250	.	G	.	.	PASS	END=19992256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	19992257	.	A	.	.	PASS	END=19992258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	19992259	.	C	.	.	PASS	END=19992266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	19992267	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	19992268	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:1:60
chr1	19992269	.	C	.	.	PASS	END=19992277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	19992278	.	G	.	.	PASS	END=19992292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	19992293	.	G	.	.	PASS	END=19992296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	19992297	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr1	19992298	.	G	.	.	PASS	END=19992305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	19992306	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:15:60
chr1	19992307	.	T	.	.	PASS	END=19992325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	19992326	.	G	.	.	PASS	END=19992334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	19992335	.	C	.	.	PASS	END=19992344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	19992345	.	G	.	.	PASS	END=19992371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:80:60
chr1	19992372	.	G	.	.	PASS	END=19992395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	19992396	.	C	.	.	PASS	END=19992419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	19992420	.	C	.	.	PASS	END=19992465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	19992466	.	A	.	.	PASS	END=19992512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	19992513	.	C	T	1581.23	PASS	BaseQRankSum=3.230;DP=138;Dels=0.00;FS=5.523;HRun=0;HaplotypeScore=5.8192;MQ=60;MQ0=0;MQRankSum=-0.644;QD=11.46;ReadPosRankSum=-0.747;SB=-557.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:76,62:138:99:1611,0,1907:60:99:0.449
chr1	19992514	.	G	.	.	PASS	END=19992606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	19992607	.	A	.	.	PASS	END=19992679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	19992680	.	C	.	.	PASS	END=19992772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	19992773	.	T	.	.	PASS	END=19992943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:266:99:60
chr1	19992944	.	C	.	.	PASS	END=19992962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:60
chr1	20005028	.	T	.	.	PASS	END=20005067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	20005068	.	G	.	.	PASS	END=20005087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	20005088	.	A	.	.	PASS	END=20005220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	20005410	.	A	.	.	PASS	END=20005430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	20005431	.	C	.	.	PASS	END=20005565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	20005566	.	A	.	.	PASS	END=20005651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	20005652	.	C	.	.	PASS	END=20005779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	20005780	.	C	.	.	PASS	END=20005858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	20005859	.	T	.	.	PASS	END=20005863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	20009115	.	C	.	.	LowGQX	END=20009214	GT	./.
chr1	20009519	.	G	.	.	LowGQX	END=20009535	GT	./.
chr1	20009536	.	G	.	.	LowGQX	END=20009607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	20009608	.	A	.	.	LowGQX	END=20009659	GT	./.
chr1	20009660	.	C	.	.	LowGQX	END=20009664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20009665	.	A	.	.	LowGQX	.	GT	./.
chr1	20009666	.	G	.	.	LowGQX	END=20009736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20009737	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	20009738	.	G	.	.	LowGQX	END=20009812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20009813	.	T	.	.	LowGQX	.	GT	./.
chr1	20009814	.	C	.	.	LowGQX	END=20009887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20009888	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	20009889	.	C	.	.	LowGQX	END=20009942	GT	./.
chr1	20020925	.	A	.	.	LowGQX	END=20021046	GT	./.
chr1	20027259	.	A	.	.	LowGQX	END=20027368	GT	./.
chr1	20027369	.	C	.	.	LowGQX	END=20027372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20027373	.	G	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	20027374	.	G	.	.	LowGQX	.	GT	./.
chr1	20027375	.	C	.	.	LowGQX	END=20027380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20063858	.	T	.	.	LowGQX	END=20063957	GT	./.
chr1	20066315	.	A	.	.	LowGQX	END=20066455	GT	./.
chr1	20067268	.	A	.	.	LowGQX	END=20067436	GT	./.
chr1	20071957	.	C	.	.	LowGQX	END=20072146	GT	./.
chr1	20072907	.	G	.	.	LowGQX	END=20073094	GT	./.
chr1	20073654	.	A	.	.	LowGQX	END=20073755	GT	./.
chr1	20082125	.	A	.	.	LowGQX	END=20082158	GT	./.
chr1	20082159	.	C	.	.	LowGQX	END=20082160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20082161	.	C	.	.	LowGQX	.	GT	./.
chr1	20082162	.	C	.	.	LowGQX	END=20082172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20082173	.	C	.	.	LowGQX	.	GT	./.
chr1	20082174	.	T	.	.	LowGQX	END=20082178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20082179	.	G	.	.	LowGQX	.	GT	./.
chr1	20082180	.	G	.	.	LowGQX	END=20082181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20082182	.	C	.	.	LowGQX	.	GT	./.
chr1	20082183	.	A	.	.	LowGQX	END=20082187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20082188	.	G	.	.	LowGQX	.	GT	./.
chr1	20082189	.	C	.	.	LowGQX	END=20082191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20082192	.	C	.	.	LowGQX	.	GT	./.
chr1	20082193	.	T	.	.	LowGQX	END=20082194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20082195	.	C	.	.	LowGQX	.	GT	./.
chr1	20082196	.	A	.	.	LowGQX	END=20082198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20082199	.	G	.	.	LowGQX	END=20082201	GT	./.
chr1	20082202	.	A	.	.	LowGQX	END=20082203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20082204	.	T	.	.	LowGQX	.	GT	./.
chr1	20082205	.	T	.	.	LowGQX	END=20082209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20082210	.	C	.	.	LowGQX	.	GT	./.
chr1	20082211	.	A	.	.	LowGQX	END=20082213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20082214	.	G	.	.	LowGQX	END=20082216	GT	./.
chr1	20082217	.	G	.	.	LowGQX	END=20082218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20082219	.	C	.	.	LowGQX	.	GT	./.
chr1	20082220	.	A	.	.	LowGQX	END=20082222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20082223	.	T	.	.	LowGQX	.	GT	./.
chr1	20082224	.	G	.	.	LowGQX	END=20082225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20082226	.	C	.	.	LowGQX	.	GT	./.
chr1	20082227	.	A	.	.	LowGQX	END=20082233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20082234	.	G	.	.	LowGQX	END=20082235	GT	./.
chr1	20082236	.	C	.	.	LowGQX	END=20082238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20082239	.	T	.	.	LowGQX	END=20082240	GT	./.
chr1	20082241	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20082242	.	C	.	.	LowGQX	END=20082244	GT	./.
chr1	20082245	.	G	.	.	LowGQX	END=20082246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20082247	.	G	.	.	LowGQX	END=20082248	GT	./.
chr1	20082249	.	G	.	.	LowGQX	END=20082256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20082257	.	G	.	.	LowGQX	END=20082258	GT	./.
chr1	20082259	.	C	.	.	LowGQX	END=20082261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:56
chr1	20096939	.	G	.	.	LowGQX	END=20097014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20097015	.	A	.	.	LowGQX	END=20097098	GT	./.
chr1	20097799	.	A	.	.	LowGQX	END=20097977	GT	./.
chr1	20107071	.	A	.	.	LowGQX	END=20107253	GT	./.
chr1	20140909	.	A	.	.	LowGQX	END=20140959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	20140960	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	20140961	.	T	.	.	LowGQX	END=20141012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20141013	.	G	.	.	LowGQX	.	GT	./.
chr1	20141014	.	G	.	.	LowGQX	END=20141017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20141018	.	A	.	.	LowGQX	.	GT	./.
chr1	20141019	.	C	.	.	LowGQX	END=20141020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20141021	.	T	.	.	LowGQX	END=20141596	GT	./.
chr1	20208934	.	C	.	.	LowGQX	END=20209293	GT	./.
chr1	20216876	.	A	.	.	LowGQX	END=20217028	GT	./.
chr1	20220859	.	A	.	.	LowGQX	END=20220975	GT	./.
chr1	20224031	.	A	.	.	LowGQX	END=20224157	GT	./.
chr1	20230758	.	A	.	.	LowGQX	END=20230864	GT	./.
chr1	20230865	.	A	.	.	LowGQX	END=20230893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20231382	.	A	.	.	LowGQX	END=20231482	GT	./.
chr1	20232923	.	A	.	.	LowGQX	END=20233007	GT	./.
chr1	20233008	.	A	.	.	LowGQX	END=20233013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20233014	.	G	.	.	LowGQX	.	GT	./.
chr1	20233015	.	G	.	.	LowGQX	END=20233022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20233023	.	G	.	.	LowGQX	.	GT	./.
chr1	20233024	.	G	.	.	LowGQX	END=20233028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20233029	.	A	.	.	LowGQX	END=20233030	GT	./.
chr1	20233031	.	T	.	.	LowGQX	END=20233041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20233042	.	C	.	.	LowGQX	.	GT	./.
chr1	20233043	.	C	.	.	LowGQX	END=20233046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20233047	.	A	.	.	LowGQX	END=20233049	GT	./.
chr1	20233050	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20233051	.	A	.	.	LowGQX	.	GT	./.
chr1	20233052	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20233053	.	A	.	.	LowGQX	.	GT	./.
chr1	20233054	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20233055	.	G	.	.	LowGQX	.	GT	./.
chr1	20233056	.	G	.	.	LowGQX	END=20233058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20233059	.	C	.	.	LowGQX	.	GT	./.
chr1	20233060	.	A	.	.	LowGQX	END=20233062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20233063	.	C	.	.	LowGQX	END=20233064	GT	./.
chr1	20233065	.	A	.	.	LowGQX	END=20233067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20233068	.	C	.	.	LowGQX	.	GT	./.
chr1	20233069	.	C	.	.	LowGQX	END=20233078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20233079	.	A	.	.	LowGQX	.	GT	./.
chr1	20233080	.	A	.	.	LowGQX	END=20233081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20233082	.	C	.	.	LowGQX	END=20233083	GT	./.
chr1	20233084	.	A	.	.	LowGQX	END=20233088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20233089	.	A	.	.	LowGQX	.	GT	./.
chr1	20233090	.	A	.	.	LowGQX	END=20233093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20233094	.	A	.	.	LowGQX	.	GT	./.
chr1	20233095	.	A	.	.	LowGQX	END=20233097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20233098	.	C	.	.	LowGQX	.	GT	./.
chr1	20233099	.	A	.	.	LowGQX	END=20233100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20233101	.	C	.	.	LowGQX	.	GT	./.
chr1	20233102	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20233103	.	C	.	.	LowGQX	END=20233104	GT	./.
chr1	20233105	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20233106	.	A	.	.	LowGQX	END=20233107	GT	./.
chr1	20233108	.	A	.	.	LowGQX	END=20233111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20234061	.	A	.	.	LowGQX	END=20234241	GT	./.
chr1	20246798	.	C	.	.	LowGQX	END=20246944	GT	./.
chr1	20248789	.	A	.	.	LowGQX	END=20248899	GT	./.
chr1	20249108	.	A	.	.	LowGQX	END=20249212	GT	./.
chr1	20249213	.	C	.	.	LowGQX	END=20249250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20249983	.	A	.	.	LowGQX	END=20250014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	20250015	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	20250016	.	G	.	.	LowGQX	END=20250071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	20250072	.	A	.	.	LowGQX	END=20250082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	20302143	.	T	.	.	PASS	END=20302160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	20302161	.	C	.	.	PASS	END=20302173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	20302174	.	G	.	.	PASS	END=20302230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	20302231	.	G	.	.	PASS	END=20302308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	20302309	.	A	.	.	PASS	END=20302347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	20302348	.	A	.	.	PASS	END=20302381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	20302382	.	T	.	.	PASS	END=20302387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	20304457	.	A	.	.	PASS	END=20304464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	20304465	.	C	.	.	PASS	END=20304494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	20304495	.	G	.	.	PASS	END=20304522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	20304523	.	T	.	.	PASS	END=20304603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	20304604	.	T	.	.	PASS	END=20304619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	20304620	.	A	.	.	PASS	END=20304644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	20304645	.	T	.	.	PASS	END=20304660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	20304661	.	G	.	.	PASS	END=20304665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	20304822	.	G	.	.	PASS	END=20304833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr1	20304834	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:63:60
chr1	20304835	.	C	.	.	PASS	END=20304843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:99:60
chr1	20304844	.	G	.	.	PASS	END=20304862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	20304863	.	G	.	.	PASS	END=20304894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	20304895	.	A	.	.	PASS	END=20304917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	20304918	.	T	.	.	PASS	END=20304943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	20304944	.	T	.	.	PASS	END=20305012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	20305013	.	T	.	.	PASS	END=20305060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	20305061	.	T	.	.	PASS	END=20305064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	20305065	.	C	T	618.52	PASS	BaseQRankSum=1.056;DP=72;Dels=0.00;FS=2.147;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=-1.056;QD=8.59;ReadPosRankSum=0.390;SB=-320.62	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:43,29:72:99:649,0,1247:60:99:0.403
chr1	20305066	.	G	.	.	PASS	END=20305068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	20305176	.	T	.	.	PASS	END=20305218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	20305219	.	G	.	.	PASS	END=20305317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:93:60
chr1	20395435	.	G	.	.	LowGQX	END=20395534	GT	./.
chr1	20411290	.	T	.	.	PASS	END=20411337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	20411338	.	C	.	.	PASS	END=20411371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	20411372	.	T	.	.	PASS	END=20411389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	20412574	.	A	.	.	PASS	END=20412588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	20412589	.	G	.	.	PASS	END=20412689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	20412690	.	G	.	.	PASS	END=20412714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	20412715	.	C	.	.	PASS	END=20412722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	20416226	.	G	.	.	PASS	END=20416239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	20416240	.	G	.	.	PASS	END=20416266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	20416267	.	C	.	.	PASS	END=20416304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	20416305	.	G	.	.	PASS	END=20416390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	20417059	.	A	.	.	PASS	END=20417085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	20417086	.	C	.	.	PASS	END=20417161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	20417162	.	T	.	.	PASS	END=20417187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	20440605	.	T	.	.	PASS	END=20440630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	20440631	.	G	.	.	PASS	END=20440671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	20440672	.	T	.	.	PASS	END=20440739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	20440740	.	C	.	.	PASS	END=20440754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	20441998	.	A	.	.	PASS	END=20442053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	20442054	.	T	C	2135.63	PASS	BaseQRankSum=0.136;DP=197;Dels=0.00;FS=1.840;HRun=1;HaplotypeScore=9.5639;MQ=60;MQ0=0;MQRankSum=-0.211;QD=10.84;ReadPosRankSum=-0.094;SB=-971.46	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:102,95:197:99:2166,0,2453:60:99:0.482
chr1	20442055	.	G	.	.	PASS	END=20442083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	20442084	.	A	.	.	PASS	END=20442106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	20442107	.	C	.	.	PASS	END=20442108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	20442824	.	A	.	.	PASS	END=20442873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	20442874	.	C	.	.	PASS	END=20442902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	20442903	.	C	.	.	PASS	END=20442943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	20442944	.	G	.	.	PASS	END=20442972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	20445922	.	T	.	.	PASS	END=20445938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:69:60
chr1	20445939	.	G	.	.	PASS	END=20445975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:78:60
chr1	20445976	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:54:60
chr1	20445977	.	C	.	.	PASS	END=20445997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	20445998	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:69:60
chr1	20445999	.	G	.	.	PASS	END=20446002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	20446003	.	A	.	.	PASS	END=20446013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr1	20446014	.	G	.	.	PASS	END=20446018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr1	20446019	.	A	.	.	PASS	END=20446021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr1	20465869	.	C	.	.	LowGQX	END=20466038	GT	./.
chr1	20466636	.	C	.	.	LowGQX	END=20466735	GT	./.
chr1	20469937	.	A	.	.	LowGQX	END=20470085	GT	./.
chr1	20471071	.	A	.	.	LowGQX	END=20471075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20471076	.	C	.	.	LowGQX	END=20471095	GT	./.
chr1	20471096	.	G	.	.	LowGQX	END=20471184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20474681	.	A	.	.	LowGQX	END=20474896	GT	./.
chr1	20490483	.	C	.	.	LowGQX	END=20490650	GT	./.
chr1	20499286	.	C	.	.	LowGQX	END=20499390	GT	./.
chr1	20501499	.	C	.	.	LowGQX	END=20501687	GT	./.
chr1	20503727	.	T	.	.	LowGQX	END=20503886	GT	./.
chr1	20517053	.	C	.	.	LowGQX	END=20517517	GT	./.
chr1	20517518	.	C	.	.	LowGQX	END=20517636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	20517637	.	C	.	.	LowGQX	END=20517899	GT	./.
chr1	20637094	.	G	.	.	LowGQX	END=20637233	GT	./.
chr1	20639328	.	G	.	.	LowGQX	END=20639481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20640814	.	G	.	.	LowGQX	END=20640915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20640916	.	C	.	.	LowGQX	.	GT	./.
chr1	20640917	.	T	.	.	LowGQX	END=20640928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20640929	.	C	.	.	LowGQX	END=20640981	GT	./.
chr1	20640982	.	C	.	.	LowGQX	END=20640988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20640989	.	G	.	.	LowGQX	.	GT	./.
chr1	20640990	.	C	.	.	LowGQX	END=20640991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20640992	.	G	.	.	LowGQX	.	GT	./.
chr1	20640993	.	G	.	.	LowGQX	END=20640995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20640996	.	T	.	.	LowGQX	.	GT	./.
chr1	20640997	.	G	.	.	LowGQX	END=20641003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20641004	.	T	.	.	LowGQX	.	GT	./.
chr1	20641005	.	C	.	.	LowGQX	END=20641041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20641042	.	T	.	.	LowGQX	.	GT	./.
chr1	20641043	.	T	.	.	LowGQX	END=20641079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20641080	.	C	.	.	LowGQX	.	GT	./.
chr1	20641081	.	C	.	.	LowGQX	END=20641085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20644022	.	G	.	.	LowGQX	END=20644168	GT	./.
chr1	20644917	.	G	.	.	LowGQX	END=20645214	GT	./.
chr1	20645874	.	G	.	.	LowGQX	END=20645999	GT	./.
chr1	20649848	.	G	.	.	LowGQX	END=20650025	GT	./.
chr1	20654382	.	G	.	.	LowGQX	END=20654493	GT	./.
chr1	20656672	.	G	.	.	LowGQX	END=20656756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20656757	.	G	.	.	LowGQX	.	GT	./.
chr1	20656758	.	T	.	.	LowGQX	END=20656763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20656764	.	G	.	.	LowGQX	.	GT	./.
chr1	20656765	.	G	.	.	LowGQX	END=20656767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20656768	.	G	.	.	LowGQX	.	GT	./.
chr1	20656769	.	C	.	.	LowGQX	END=20656779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20656780	.	A	.	.	LowGQX	.	GT	./.
chr1	20656781	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20656782	.	G	.	.	LowGQX	END=20656823	GT	./.
chr1	20656824	.	A	.	.	LowGQX	END=20656829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20656830	.	C	.	.	LowGQX	.	GT	./.
chr1	20656831	.	A	.	.	LowGQX	END=20656850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20656851	.	T	.	.	LowGQX	.	GT	./.
chr1	20656852	.	G	.	.	LowGQX	END=20656856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20656857	.	A	.	.	LowGQX	.	GT	./.
chr1	20656858	.	T	.	.	LowGQX	END=20656865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20656866	.	T	.	.	LowGQX	.	GT	./.
chr1	20656867	.	C	.	.	LowGQX	END=20656875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20657300	.	A	.	.	LowGQX	END=20657476	GT	./.
chr1	20659258	.	G	.	.	LowGQX	END=20659444	GT	./.
chr1	20662795	.	G	.	.	LowGQX	END=20662803	GT	./.
chr1	20662804	.	G	.	.	LowGQX	END=20662978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20662979	.	G	.	.	LowGQX	.	GT	./.
chr1	20664138	.	G	.	.	LowGQX	END=20664329	GT	./.
chr1	20664448	.	C	.	.	LowGQX	END=20664486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	20664487	.	C	A	9.30	LowGQX	BaseQRankSum=-1.026;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=1.026;QD=2.32;ReadPosRankSum=0.000;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:38.75:39,0,39:60:9:0.500
chr1	20664488	.	C	.	.	LowGQX	END=20664547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20668913	.	T	.	.	LowGQX	END=20669102	GT	./.
chr1	20669571	.	G	.	.	LowGQX	END=20669886	GT	./.
chr1	20671908	.	T	.	.	LowGQX	END=20671922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20671923	.	A	.	.	LowGQX	END=20671924	GT	./.
chr1	20671925	.	T	.	.	LowGQX	END=20671960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	20671961	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	20671962	.	C	.	.	LowGQX	END=20671971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	20671972	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	20671973	.	G	.	.	LowGQX	END=20672012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20672013	.	A	.	.	LowGQX	.	GT	./.
chr1	20672014	.	T	.	.	LowGQX	END=20672016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20672017	.	A	.	.	LowGQX	.	GT	./.
chr1	20672018	.	C	.	.	LowGQX	END=20672030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20672031	.	T	.	.	LowGQX	END=20672033	GT	./.
chr1	20672034	.	G	.	.	LowGQX	END=20672049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20672050	.	C	.	.	LowGQX	.	GT	./.
chr1	20672051	.	G	.	.	LowGQX	END=20672057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20672058	.	G	.	.	LowGQX	.	GT	./.
chr1	20672059	.	C	.	.	LowGQX	END=20672073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20672074	.	T	.	.	LowGQX	END=20672086	GT	./.
chr1	20674737	.	G	.	.	LowGQX	END=20674869	GT	./.
chr1	20675590	.	G	.	.	LowGQX	END=20675766	GT	./.
chr1	20676636	.	T	.	.	LowGQX	END=20676735	GT	./.
chr1	20677279	.	C	.	.	LowGQX	END=20677434	GT	./.
chr1	20678547	.	G	.	.	LowGQX	END=20678665	GT	./.
chr1	20680249	.	G	.	.	LowGQX	END=20680756	GT	./.
chr1	20810128	.	T	.	.	LowGQX	END=20810227	GT	./.
chr1	20811675	.	G	.	.	LowGQX	END=20811874	GT	./.
chr1	20827181	.	T	.	.	LowGQX	END=20827914	GT	./.
chr1	20828560	.	A	.	.	LowGQX	END=20828684	GT	./.
chr1	20829709	.	A	.	.	LowGQX	END=20829808	GT	./.
chr1	20834396	.	A	.	.	LowGQX	END=20834519	GT	./.
chr1	20879465	.	C	.	.	LowGQX	END=20879476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20879477	.	G	.	.	LowGQX	.	GT	./.
chr1	20879478	.	G	.	.	LowGQX	END=20879496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20879497	.	C	.	.	LowGQX	END=20879533	GT	./.
chr1	20879534	.	T	.	.	LowGQX	END=20879537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20879538	.	T	.	.	LowGQX	.	GT	./.
chr1	20879539	.	C	.	.	LowGQX	END=20879552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20879553	.	C	.	.	LowGQX	.	GT	./.
chr1	20879554	.	A	.	.	LowGQX	END=20879555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20879556	.	G	.	.	LowGQX	END=20879557	GT	./.
chr1	20879558	.	C	.	.	LowGQX	END=20879563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20879564	.	T	.	.	LowGQX	.	GT	./.
chr1	20879565	.	C	.	.	LowGQX	END=20879580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20879581	.	T	.	.	LowGQX	.	GT	./.
chr1	20879582	.	C	.	.	LowGQX	END=20879598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20879599	.	C	.	.	LowGQX	.	GT	./.
chr1	20879600	.	C	.	.	LowGQX	END=20879684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20879685	.	C	.	.	LowGQX	END=20880458	GT	./.
chr1	20915572	.	T	.	.	PASS	END=20915598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	20915599	.	C	.	.	PASS	END=20915654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	20915655	.	G	.	.	PASS	END=20915759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	20915760	.	G	.	.	PASS	END=20915790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	20915791	.	C	.	.	PASS	END=20915814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	20915815	.	C	.	.	PASS	END=20915827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	20931370	.	A	.	.	PASS	END=20931383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	20931384	.	C	.	.	PASS	END=20931395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	20931396	.	C	.	.	PASS	END=20931426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	20931427	.	A	.	.	PASS	END=20931454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	20931455	.	C	.	.	PASS	END=20931466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	20931467	.	A	.	.	PASS	END=20931489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	20931490	.	T	.	.	PASS	END=20931525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	20931526	.	T	.	.	PASS	END=20931583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	20940274	.	T	.	.	PASS	END=20940296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	20940297	.	G	.	.	PASS	END=20940379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	20940380	.	A	.	.	PASS	END=20940410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	20940411	.	T	.	.	PASS	END=20940439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	20940440	.	C	.	.	PASS	END=20940443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	20944894	.	A	.	.	PASS	END=20944911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	20944912	.	G	.	.	PASS	END=20945001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	20945002	.	A	.	.	PASS	END=20945048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	20945049	.	G	.	.	PASS	END=20945061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	20945062	.	C	.	.	PASS	END=20945089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr1	20945090	.	A	.	.	PASS	END=20945101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	20945102	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:59:60
chr1	20945103	.	A	.	.	PASS	END=20945112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	20959991	.	C	.	.	LowGQX	END=20960061	GT	./.
chr1	20960062	.	G	.	.	LowGQX	END=20960069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	20960070	.	G	.	.	LowGQX	END=20960074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	20960075	.	C	.	.	LowGQX	END=20960079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	20960080	.	G	.	.	LowGQX	END=20960089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	20960090	.	C	.	.	PASS	END=20960118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	20960119	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:2:60
chr1	20960120	.	C	.	.	PASS	END=20960130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	20960131	.	C	.	.	PASS	END=20960135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	20960136	.	G	.	.	PASS	END=20960139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	20960140	.	G	.	.	PASS	END=20960145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	20960146	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:9:60
chr1	20960147	.	C	.	.	PASS	END=20960159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	20960160	.	G	.	.	PASS	END=20960173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	20960174	.	C	.	.	PASS	END=20960187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	20960188	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:42:60
chr1	20960189	.	G	.	.	PASS	END=20960193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	20960194	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:38:27:60
chr1	20960195	.	C	.	.	PASS	END=20960204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	20960205	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:60:60
chr1	20960206	.	G	.	.	PASS	END=20960215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	20960216	.	G	.	.	PASS	END=20960229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	20960230	.	C	T	651.91	PASS	BaseQRankSum=0.074;DP=73;Dels=0.00;FS=3.584;HRun=1;HaplotypeScore=5.7343;MQ=60;MQ0=0;MQRankSum=-0.414;QD=8.93;ReadPosRankSum=0.857;SB=-198.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:45,28:73:99:682,0,1020:60:99:0.384
chr1	20960231	.	C	.	.	PASS	END=20960301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	20960302	.	G	.	.	PASS	END=20960375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	20960376	.	A	.	.	PASS	END=20960418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	20960419	.	G	.	.	PASS	END=20960445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	20960446	.	C	.	.	PASS	END=20960451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	20960452	.	C	.	.	PASS	END=20960468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	20960469	.	T	.	.	PASS	END=20960475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	20960476	.	G	.	.	PASS	END=20960479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	20964284	.	T	.	.	PASS	END=20964290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	20964291	.	T	.	.	PASS	END=20964302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	20964303	.	C	.	.	PASS	END=20964313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	20964314	.	T	.	.	PASS	END=20964327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	20964328	.	A	G	1060.87	PASS	DP=37;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=28.67;SB=-396.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,37:37:84.26:1094,84,0:60:84:1.000
chr1	20964329	.	T	.	.	PASS	END=20964344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	20964345	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:39:60
chr1	20964346	.	C	.	.	PASS	END=20964354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	20964355	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:56:60
chr1	20964356	.	A	.	.	PASS	END=20964372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:75:60
chr1	20964373	.	G	.	.	PASS	END=20964401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	20964402	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:72:60
chr1	20964403	.	G	.	.	PASS	END=20964433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:78:60
chr1	20964434	.	G	.	.	PASS	END=20964529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:92:60
chr1	20964530	.	G	.	.	PASS	END=20964540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	20964541	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:69:60
chr1	20964542	.	A	.	.	PASS	END=20964565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr1	20964566	.	C	.	.	PASS	END=20964569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	20964570	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:31:60
chr1	20964571	.	T	.	.	PASS	END=20964581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	20964582	.	C	.	.	PASS	END=20964591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	20964592	.	C	.	.	PASS	END=20964611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	20964612	.	G	.	.	PASS	END=20964616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	20964617	.	A	.	.	PASS	END=20964667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	20964668	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	20964669	.	C	.	.	PASS	END=20964673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	20966334	.	T	.	.	PASS	END=20966355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	20966356	.	T	.	.	PASS	END=20966470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	20966471	.	A	.	.	PASS	END=20966492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	20966493	.	C	.	.	PASS	END=20966507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	20966508	.	A	.	.	PASS	END=20966528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	20966529	.	A	.	.	PASS	END=20966536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	20970932	.	G	.	.	PASS	END=20970951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	20970952	.	C	.	.	PASS	END=20971061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	20971062	.	C	.	.	PASS	END=20971104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	20971105	.	C	.	.	PASS	END=20971125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	20971126	.	G	.	.	PASS	END=20971146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	20971147	.	T	.	.	PASS	END=20971169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	20971170	.	G	.	.	PASS	END=20971197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	20971198	.	T	.	.	PASS	END=20971212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	20971213	.	G	.	.	PASS	END=20971216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	20971984	.	A	.	.	LowGQX	END=20971985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:57
chr1	20971986	.	A	.	.	LowGQX	END=20971996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:57
chr1	20971997	.	A	.	.	LowGQX	END=20971998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:57
chr1	20971999	.	G	.	.	LowGQX	.	GT	./.
chr1	20972000	.	T	.	.	LowGQX	END=20972006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	20972007	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:3:60
chr1	20972008	.	G	.	33	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:60:3
chr1	20972009	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:3:60
chr1	20972010	.	C	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:5:6.02:60:6
chr1	20972011	.	G	.	.	LowGQX	END=20972013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	20972014	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	20972015	.	A	.	.	LowGQX	END=20972016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	20972017	.	G	.	.	LowGQX	END=20972019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	20972020	.	T	.	.	PASS	END=20972023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	20972024	.	A	.	.	LowGQX	END=20972025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	20972026	.	C	.	.	PASS	END=20972027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	20972028	.	A	.	.	LowGQX	END=20972031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:60
chr1	20972032	.	G	.	.	PASS	END=20972038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	20972039	.	C	.	.	PASS	END=20972047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	20972048	.	G	A	482.63	PASS	DP=18;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;QD=26.81;SB=-114.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,18:18:39.13:516,39,0:60:39:1.000
chr1	20972049	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:51:60
chr1	20972050	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:3:60
chr1	20972051	.	A	.	.	PASS	END=20972055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	20972056	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:84:60
chr1	20972057	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:51:60
chr1	20972058	.	C	.	.	PASS	END=20972090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	20972091	.	C	.	.	PASS	END=20972110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	20972111	.	G	A	848.76	PASS	BaseQRankSum=0.105;DP=73;Dels=0.00;FS=3.361;HRun=0;HaplotypeScore=4.7868;MQ=60;MQ0=0;MQRankSum=0.304;QD=11.63;ReadPosRankSum=0.216;SB=-504.95	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,39:73:99:879,0,798:60:99:0.534
chr1	20972112	.	C	.	.	PASS	END=20972137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	20972138	.	G	.	.	PASS	END=20972206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	20972207	.	C	.	.	PASS	END=20972244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	20972245	.	T	.	.	PASS	END=20972267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	20974947	.	T	.	.	PASS	END=20974977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	20974978	.	C	.	.	PASS	END=20975042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	20975043	.	C	.	.	PASS	END=20975093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	20975094	.	G	.	.	PASS	END=20975126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	20975127	.	T	.	.	PASS	END=20975139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	20975140	.	T	.	.	PASS	END=20975176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	20975437	.	A	.	.	PASS	END=20975456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:96:60
chr1	20975457	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:75:60
chr1	20975458	.	C	.	.	PASS	END=20975469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	20975470	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:73:60
chr1	20975471	.	C	.	.	PASS	END=20975489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	20975490	.	G	.	.	PASS	END=20975506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	20975507	.	G	.	.	PASS	END=20975528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	20975529	.	C	.	.	PASS	END=20975550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	20975551	.	G	.	.	PASS	END=20975656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	20975657	.	T	.	.	PASS	END=20975680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	20975681	.	T	.	.	PASS	END=20975709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	20975710	.	C	.	.	PASS	END=20975731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	20975732	.	T	.	.	PASS	END=20975737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	20975738	.	C	.	.	PASS	END=20975739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:75:60
chr1	20975740	.	G	.	.	PASS	END=20975752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	20975753	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:60:60
chr1	20975754	.	G	.	.	PASS	END=20975757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	20975758	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:60:60
chr1	20975759	.	G	.	.	PASS	END=20975775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	20976876	.	T	.	.	PASS	END=20976893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	20976894	.	A	.	.	PASS	END=20976929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	20976930	.	C	.	.	PASS	END=20976972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	20976973	.	G	.	.	PASS	END=20976998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	20976999	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:301:99:60
chr1	20977000	.	A	C	3559.41	PASS	BaseQRankSum=1.100;DP=303;Dels=0.00;FS=2.218;HRun=0;HaplotypeScore=16.1401;MQ=60;MQ0=0;MQRankSum=-0.702;QD=11.75;ReadPosRankSum=-0.031;SB=-1079.68	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:159,144:303:99:3559,0,3976:60:99:0.475
chr1	20977001	.	T	.	.	PASS	END=20977128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:285:99:60
chr1	20977129	.	G	.	.	PASS	END=20977158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	20977159	.	T	.	.	PASS	END=20977184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	20977185	.	T	.	.	PASS	END=20977200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	20977201	.	T	.	.	PASS	END=20977220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	20977221	.	A	T	2885.96	PASS	DP=89;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.7877;MQ=60;MQ0=0;QD=32.43;SB=-150.90	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,89:89:99:2919,226,0:60:99:1.000
chr1	20977222	.	T	.	.	PASS	END=20977235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	20978870	.	C	.	.	PASS	END=20978916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	20978917	.	G	.	.	PASS	END=20978997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	20978998	.	G	.	.	PASS	END=20979023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	20979112	.	A	.	.	PASS	END=20979125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	20979126	.	G	.	.	PASS	END=20979222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	20979342	.	A	.	.	PASS	END=20979462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	20979463	.	T	.	.	PASS	END=20979466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	20980118	.	A	.	.	PASS	END=20980144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	20980145	.	T	.	.	PASS	END=20980269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	20980714	.	A	.	.	PASS	END=20980811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	20980812	.	C	.	.	PASS	END=20980835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	20980836	.	A	.	.	PASS	END=20980865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr1	20980866	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:99:60
chr1	20981104	.	T	.	.	PASS	END=20981203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	20981931	.	A	.	.	PASS	END=20982030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	20982167	.	A	.	.	PASS	END=20982253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	20982254	.	A	.	.	PASS	END=20982274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	20982588	.	A	.	.	PASS	END=20982635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	20982636	.	C	.	.	PASS	END=20982687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	20987372	.	A	.	.	PASS	END=20987486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	20987688	.	A	.	.	PASS	END=20987746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	20987747	.	G	.	.	PASS	END=20987820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	20987821	.	C	.	.	PASS	END=20987864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	20987865	.	C	.	.	PASS	END=20987872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	20987873	.	G	C	4173.46	PASS	DP=136;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=16.0976;MQ=60;MQ0=0;QD=30.69;SB=-1382.58	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,136:136:99:4173,319,0:60:99:1.000
chr1	20987874	.	T	.	.	PASS	END=20987891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	20987892	.	C	.	.	PASS	END=20987896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	20991026	.	G	.	.	PASS	END=20991045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	20991046	.	C	.	.	PASS	END=20991131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	20991132	.	A	.	.	PASS	END=20991157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	20991158	.	G	.	.	PASS	END=20991171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	20991172	.	G	.	.	PASS	END=20991181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	20991182	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:68:60
chr1	20991183	.	G	.	.	PASS	END=20991186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	20991187	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:30:60
chr1	20991188	.	C	.	.	PASS	END=20991193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	20991194	.	G	.	.	PASS	END=20991196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	20991197	.	T	.	.	PASS	END=20991200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	20991201	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:42:60
chr1	20991202	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:57:60
chr1	20991203	.	G	.	.	PASS	END=20991235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	20991236	.	T	.	.	PASS	END=20991238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	20991239	.	T	.	.	PASS	END=20991240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	20991241	.	G	.	.	PASS	END=20991245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	20991246	.	T	.	.	PASS	END=20991247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	20991248	.	G	.	.	PASS	END=20991253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	20991254	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:66:60
chr1	20991255	.	G	.	.	PASS	END=20991258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	20991259	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:63:60
chr1	20991260	.	G	.	.	PASS	END=20991266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	20991267	.	A	.	.	PASS	END=20991272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	20991273	.	G	A	306.55	SB	BaseQRankSum=-1.244;DP=28;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=0.461;QD=10.95;ReadPosRankSum=-0.921;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:15,13:28:99:337,0,441:60:99:0.464
chr1	20991274	.	A	.	.	PASS	END=20991276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	20991277	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:39:60
chr1	20991278	.	G	.	.	PASS	END=20991294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	20991295	.	G	.	.	PASS	END=20991301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	20991302	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:24:60
chr1	20991303	.	G	.	.	PASS	END=20991306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	20992656	.	A	.	.	PASS	END=20992660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:54:60
chr1	20992661	.	T	.	.	PASS	END=20992666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	20992667	.	A	.	.	PASS	END=20992680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	20992681	.	G	.	.	PASS	END=20992700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	20992701	.	A	.	.	PASS	END=20992727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	20992728	.	T	.	.	PASS	END=20992818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	20992819	.	G	C	1123.38	PASS	BaseQRankSum=-1.299;DP=99;Dels=0.00;FS=2.699;HRun=1;HaplotypeScore=7.6808;MQ=60;MQ0=0;MQRankSum=0.046;QD=11.35;ReadPosRankSum=-0.968;SB=-749.09	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,55:99:99:1153,0,1091:60:99:0.556
chr1	20992820	.	T	.	.	PASS	END=20992855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	20992856	.	C	.	.	PASS	END=20992875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	20996863	.	G	.	.	PASS	END=20996885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:77:60
chr1	20996886	.	A	.	.	PASS	END=20996905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	20996906	.	G	.	.	PASS	END=20996947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	20996948	.	T	.	.	PASS	END=20996992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	20996993	.	A	.	.	PASS	END=20997029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	20997030	.	C	.	.	PASS	END=20997035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	20998380	.	G	.	.	PASS	END=20998393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	20998394	.	G	.	.	PASS	END=20998416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	20998417	.	G	.	.	PASS	END=20998445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	20998446	.	T	.	.	PASS	END=20998550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	20998551	.	T	.	.	PASS	END=20998594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	20998595	.	T	.	.	PASS	END=20998658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	20998659	.	G	.	.	PASS	END=20998676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr1	20998677	.	C	.	.	PASS	END=20998689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	20998690	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:75:60
chr1	20998691	.	T	.	.	PASS	END=20998722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	20998723	.	A	.	.	PASS	END=20998736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	20998737	.	T	.	.	PASS	END=20998740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	21009095	.	T	.	.	PASS	END=21009113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	21009114	.	G	.	.	PASS	END=21009132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	21009133	.	A	.	.	PASS	END=21009172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	21009173	.	G	.	.	PASS	END=21009202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	21009203	.	G	.	.	PASS	END=21009353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	21009354	.	A	.	.	PASS	END=21009376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	21009377	.	A	.	.	PASS	END=21009411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	21009412	.	A	.	.	PASS	END=21009428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	21011251	.	C	.	.	PASS	END=21011281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:90:60
chr1	21011282	.	C	.	.	PASS	END=21011333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	21011334	.	C	.	.	PASS	END=21011354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	21011355	.	T	C	1013.82	PASS	BaseQRankSum=-1.125;DP=105;Dels=0.00;FS=3.915;HRun=1;HaplotypeScore=13.3941;MQ=60;MQ0=0;MQRankSum=-1.150;QD=9.66;ReadPosRankSum=2.072;SB=-512.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:58,47:105:99:1044,0,1259:60:99:0.448
chr1	21011356	.	G	.	.	PASS	END=21011400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	21011401	.	G	.	.	PASS	END=21011430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:78:60
chr1	21011431	.	A	.	.	PASS	END=21011451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	21011452	.	C	.	.	PASS	END=21011483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	21011484	.	T	.	.	PASS	END=21011492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	21011493	.	T	.	.	PASS	END=21011508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	21011509	.	A	.	.	PASS	END=21011516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	21011517	.	A	.	.	PASS	END=21011518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	21011519	.	T	.	.	PASS	END=21011523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chr1	21011524	.	A	.	.	PASS	END=21011529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	21011530	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	21011531	.	C	.	.	PASS	END=21011533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	21011534	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	21011535	.	G	.	.	PASS	END=21011536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	21011537	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	21011538	.	G	.	.	PASS	END=21011542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	21011543	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:21:60
chr1	21011544	.	G	.	.	PASS	END=21011550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	21011551	.	C	.	.	PASS	END=21011580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	21011581	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	21011582	.	G	.	.	PASS	END=21011593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	21011594	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	21011595	.	A	.	.	PASS	END=21011603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	21011604	.	T	.	.	PASS	END=21011605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	21011606	.	C	.	.	PASS	END=21011613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	21011614	.	T	.	.	PASS	END=21011629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	21011630	.	C	.	.	LowGQX	END=21011631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	21011632	.	C	.	.	PASS	END=21011633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	21011634	.	T	.	.	LowGQX	END=21011635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	21011636	.	C	.	.	PASS	END=21011637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	21011638	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	21011639	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	21011640	.	T	.	.	LowGQX	END=21011649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	21011650	.	C	.	.	LowGQX	END=21011651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	21011652	.	G	.	.	LowGQX	END=21011654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	21011655	.	A	.	.	LowGQX	END=21011658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	21011659	.	A	.	.	LowGQX	END=21011660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	21011661	.	A	.	.	LowGQX	END=21011663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	21011664	.	C	.	.	LowGQX	END=21011672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	21011673	.	T	.	.	LowGQX	END=21011680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	21011681	.	T	.	.	LowGQX	END=21011682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	21011683	.	A	.	.	LowGQX	END=21011685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	21011686	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	21011687	.	C	.	.	LowGQX	END=21011690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	21011691	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	21011692	.	A	.	.	LowGQX	END=21011700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	21012488	.	G	.	.	PASS	END=21012503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	21012504	.	C	.	.	PASS	END=21012530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	21012531	.	G	.	.	PASS	END=21012574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	21012575	.	G	A	590.45	PASS	BaseQRankSum=1.182;DP=67;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.5754;MQ=60;MQ0=0;MQRankSum=-0.582;QD=8.81;ReadPosRankSum=-0.543;SB=-270.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:40,27:67:99:620,0,875:60:99:0.403
chr1	21012576	.	G	.	.	PASS	END=21012625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:84:60
chr1	21012626	.	G	.	.	PASS	END=21012660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	21012661	.	G	.	.	PASS	END=21012667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	21012668	.	A	.	.	PASS	END=21012669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:62:60
chr1	21012670	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:93:60
chr1	21013830	.	C	.	.	PASS	END=21013832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	21013833	.	G	.	.	PASS	END=21013846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	21013847	.	G	.	.	PASS	END=21013872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	21013873	.	T	.	.	PASS	END=21013902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	21013903	.	T	.	.	PASS	END=21013920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	21013921	.	G	.	.	PASS	END=21013978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	21013979	.	C	.	.	PASS	END=21014031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	21014032	.	A	.	.	PASS	END=21014091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	21014092	.	A	.	.	PASS	END=21014110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr1	21014111	.	C	.	.	PASS	END=21014168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:311:99:60
chr1	21014169	.	G	.	.	PASS	END=21014308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:363:99:60
chr1	21014309	.	T	.	.	PASS	END=21014341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:273:99:60
chr1	21014342	.	C	.	.	PASS	END=21014364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	21014365	.	T	.	.	PASS	END=21014388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	21014389	.	C	.	.	PASS	END=21014407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	21014408	.	T	.	.	PASS	END=21014417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	21014418	.	T	.	.	PASS	END=21014432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	21014433	.	A	.	.	PASS	END=21014474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	21014475	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:75:60
chr1	21014476	.	C	.	.	PASS	END=21014488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	21016630	.	A	.	.	PASS	END=21016637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	21016638	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:57:60
chr1	21016639	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:93:60
chr1	21016640	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:53:60
chr1	21016641	.	C	.	.	PASS	END=21016644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	21016645	.	C	.	.	PASS	END=21016706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:96:60
chr1	21016707	.	A	.	.	PASS	END=21016783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	21016784	.	G	.	.	PASS	END=21016796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	21016797	.	G	.	.	PASS	END=21016802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	21016803	.	A	.	.	PASS	END=21016804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	21016805	.	C	.	.	PASS	END=21016825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	21016826	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:48:60
chr1	21016827	.	T	.	.	PASS	END=21016829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	21016830	.	T	.	.	PASS	END=21016841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	21016842	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:60
chr1	21016843	.	G	.	.	PASS	END=21016845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	21016846	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:18:60
chr1	21016847	.	C	.	.	PASS	END=21016848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	21016849	.	A	.	.	PASS	END=21016851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:63:60
chr1	21016852	.	G	.	.	PASS	END=21016873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	21016874	.	A	.	.	PASS	END=21016879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	21024821	.	G	.	.	PASS	END=21024879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	21024880	.	T	.	.	PASS	END=21024900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	21024901	.	C	T	2879.95	PASS	DP=109;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=17.0445;MQ=60;MQ0=0;QD=26.42;SB=-1602.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,108:109:99:2913,220,0:60:99:1.000
chr1	21024902	.	G	.	.	PASS	END=21024954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	21024955	.	C	.	.	PASS	END=21024974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	21024975	.	A	.	.	PASS	END=21025002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	21025003	.	G	.	.	PASS	END=21025030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	21025031	.	C	.	.	PASS	END=21025032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	21030889	.	G	.	.	PASS	END=21030915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	21030916	.	G	A	250.81	SB	BaseQRankSum=-0.995;DP=38;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.8829;MQ=60;MQ0=0;MQRankSum=0.866;QD=6.60;ReadPosRankSum=1.251;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:21,15:38:99:281,0,610:60:99:0.417
chr1	21030917	.	C	.	.	PASS	END=21030934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	21030935	.	C	.	.	PASS	END=21030947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	21030948	.	C	.	.	PASS	END=21031002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	21031003	.	G	.	.	PASS	END=21031045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	21031046	.	C	T	1130.99	PASS	BaseQRankSum=0.695;DP=110;Dels=0.00;FS=0.751;HRun=0;HaplotypeScore=5.6815;MQ=60;MQ0=0;MQRankSum=-1.872;QD=10.28;ReadPosRankSum=2.230;SB=-672.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:57,52:110:99:1161,0,1402:60:99:0.477
chr1	21031047	.	G	.	.	PASS	END=21031097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	21031098	.	G	.	.	PASS	END=21031171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	21031172	.	C	.	.	PASS	END=21031203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	21031204	.	A	.	.	PASS	END=21031209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	21031210	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:75:60
chr1	21031211	.	G	.	.	PASS	END=21031212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	21031213	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:73:60
chr1	21031214	.	C	.	.	PASS	END=21031217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	21031218	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:75:60
chr1	21031219	.	A	.	.	PASS	END=21031224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	21031225	.	C	.	.	PASS	END=21031226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	21031227	.	T	.	.	PASS	END=21031250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	21031251	.	C	.	.	PASS	END=21031252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:90:60
chr1	21031253	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:45:60
chr1	21031254	.	A	.	.	PASS	END=21031256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	21031257	.	G	.	.	PASS	END=21031266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	21031267	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:66:60
chr1	21031268	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:30:60
chr1	21031269	.	A	.	.	PASS	END=21031271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	21031272	.	T	.	.	PASS	END=21031273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	21031274	.	G	.	.	PASS	END=21031286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	21031287	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	21031288	.	C	.	.	PASS	END=21031290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	21031291	.	T	.	.	PASS	END=21031298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	21031299	.	T	.	.	PASS	END=21031304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	21031305	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:66:60
chr1	21031306	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:39:60
chr1	21031307	.	G	.	.	PASS	END=21031314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	21031315	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:60
chr1	21031316	.	C	.	.	PASS	END=21031318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	21031319	.	G	.	.	PASS	END=21031320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	21031321	.	A	.	.	PASS	END=21031325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	21031326	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:18:60
chr1	21031327	.	G	.	.	PASS	END=21031329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	21031330	.	C	.	.	PASS	END=21031339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	21031340	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:12:60
chr1	21031341	.	A	.	.	PASS	END=21031343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr1	21031344	.	T	.	.	PASS	END=21031345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	21031346	.	C	.	.	PASS	END=21031352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	21031353	.	T	.	.	PASS	END=21031354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	21031355	.	C	.	.	PASS	END=21031359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	21031360	.	T	.	.	LowGQX	END=21031361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	21031362	.	C	.	.	PASS	END=21031373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	21031374	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr1	21031375	.	G	.	.	PASS	END=21031376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	21031377	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	21031378	.	C	.	.	PASS	END=21031388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	21031389	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	21031390	.	C	.	.	PASS	END=21031398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	21031399	.	A	.	.	LowGQX	END=21031400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr1	21031401	.	A	.	.	LowGQX	END=21031411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	21031412	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	21031413	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	21031414	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	21031415	.	G	.	.	LowGQX	END=21031424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	21031425	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	21031426	.	C	.	.	LowGQX	END=21031429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	21031430	.	T	.	.	LowGQX	END=21031435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	21031436	.	C	.	.	LowGQX	END=21031441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	21031442	.	A	.	.	LowGQX	END=21031443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	21036081	.	G	.	.	PASS	END=21036107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:96:60
chr1	21036108	.	G	.	.	PASS	END=21036119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	21036120	.	G	.	.	PASS	END=21036162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	21036163	.	G	.	.	PASS	END=21036254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	21036255	.	C	.	.	PASS	END=21036260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	21036261	.	T	.	.	PASS	END=21036270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	21036271	.	G	.	.	PASS	END=21036280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	21036281	.	A	.	.	PASS	END=21036310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	21036311	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:57:60
chr1	21036312	.	G	.	.	PASS	END=21036339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	21036340	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:60:60
chr1	21036341	.	C	.	.	PASS	END=21036368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr1	21036369	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:57:60
chr1	21036370	.	T	.	.	PASS	END=21036372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr1	21039896	.	G	.	.	PASS	END=21039897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	21039898	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:45:60
chr1	21039899	.	A	.	.	PASS	END=21039900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:30:60
chr1	21039901	.	C	.	.	PASS	END=21039903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	21039904	.	C	.	.	PASS	END=21039908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	21039909	.	C	.	.	PASS	END=21039913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:48:60
chr1	21039914	.	A	.	.	PASS	END=21039915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:45:60
chr1	21039916	.	C	.	.	PASS	END=21039919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:60
chr1	21039920	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:31:60
chr1	21039921	.	C	.	.	PASS	END=21039928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:60
chr1	21039929	.	C	.	.	PASS	END=21039933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:75:60
chr1	21039934	.	G	.	.	PASS	END=21039943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:77:60
chr1	21039944	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:64:60
chr1	21039945	.	A	.	.	PASS	END=21040016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:93:60
chr1	21040017	.	G	.	.	PASS	END=21040057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	21040058	.	G	.	.	PASS	END=21040070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr1	21040071	.	A	.	.	PASS	END=21040077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:72:60
chr1	21040078	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:99:60
chr1	21040079	.	C	A	1056.83	PASS	DP=48;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.5707;MQ=60;MQ0=0;QD=22.02;SB=-750.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,48:48:78.26:1090,78,0:60:78:1.000
chr1	21040080	.	T	.	.	PASS	END=21040087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:72:60
chr1	21040088	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:39:60
chr1	21040089	.	G	.	.	PASS	END=21040099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:72:60
chr1	21041935	.	T	.	.	PASS	END=21041959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	21041960	.	G	.	.	PASS	END=21041982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	21041983	.	T	.	.	PASS	END=21042093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	21042094	.	G	A	2352.86	PASS	BaseQRankSum=2.514;DP=233;Dels=0.00;FS=2.372;HRun=0;HaplotypeScore=18.9911;MQ=60;MQ0=0;MQRankSum=1.658;QD=10.10;ReadPosRankSum=-0.854;SB=-1209.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:130,102:233:99:2383,0,3174:60:99:0.440
chr1	21042095	.	T	.	.	PASS	END=21042123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	21042124	.	A	.	.	PASS	END=21042146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	21042147	.	G	.	.	PASS	END=21042156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	21042157	.	C	T	1278.62	PASS	BaseQRankSum=0.664;DP=115;Dels=0.00;FS=0.932;HRun=0;HaplotypeScore=8.6800;MQ=60;MQ0=0;MQRankSum=2.300;QD=11.12;ReadPosRankSum=-2.771;SB=-329.80	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:61,54:115:99:1309,0,1560:60:99:0.470
chr1	21042158	.	G	.	.	PASS	END=21042173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	21042174	.	G	.	.	PASS	END=21042183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	21043918	.	G	.	.	PASS	END=21043920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	21043921	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:21:60
chr1	21043922	.	G	.	.	PASS	END=21043925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	21043926	.	T	C	719.53	PASS	DP=21;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=34.26;SB=-107.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,21:21:60.19:753,60,0:60:60:1.000
chr1	21043927	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:60:60
chr1	21043928	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:42:60
chr1	21043929	.	T	.	.	PASS	END=21043942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	21043943	.	C	.	.	PASS	END=21043961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	21043962	.	C	.	.	PASS	END=21043963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	21043964	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:45:60
chr1	21043965	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:75:60
chr1	21043966	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:99:60
chr1	21043967	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:60
chr1	21043968	.	C	.	.	PASS	END=21043995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	21043996	.	G	.	.	PASS	END=21044032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	21044033	.	C	.	.	PASS	END=21044122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	21044123	.	G	.	.	PASS	END=21044160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:79:60
chr1	21044161	.	A	G	1645.53	PASS	DP=59;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=2.8408;MQ=60;MQ0=0;QD=27.89;SB=-829.40	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,59:59:99:1679,123,0:60:99:1.000
chr1	21044162	.	C	.	.	PASS	END=21044173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	21044174	.	A	.	.	PASS	END=21044175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:74:60
chr1	21044176	.	A	.	.	PASS	END=21044188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr1	21044189	.	T	.	.	PASS	END=21044197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	21044198	.	A	.	.	PASS	END=21044218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	21044219	.	A	C	814.82	PASS	DP=30;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=5.7240;MQ=60;MQ0=0;QD=27.16;SB=-280.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,30:30:63.21:848,63,0:60:63:1.000
chr1	21044220	.	C	.	.	PASS	END=21044222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr1	21044223	.	G	.	.	PASS	END=21044224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:48:60
chr1	21044225	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:34:60
chr1	21044226	.	C	.	.	PASS	END=21044228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:60
chr1	21044229	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:39:60
chr1	21044230	.	G	.	.	PASS	END=21044231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	21044232	.	T	.	.	PASS	END=21044233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:30:60
chr1	21044234	.	A	.	.	PASS	END=21044237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	21044238	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:6:60
chr1	21044239	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:45:60
chr1	21044240	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:60
chr1	21044241	.	C	.	.	PASS	END=21044249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	21044250	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:60
chr1	21048283	.	T	.	.	LowGQX	END=21048490	GT	./.
chr1	21049247	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21049248	.	C	.	.	LowGQX	.	GT	./.
chr1	21049249	.	C	.	.	LowGQX	END=21049252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21049253	.	A	.	.	LowGQX	.	GT	./.
chr1	21049254	.	A	.	.	LowGQX	END=21049257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21049258	.	G	.	.	LowGQX	END=21049259	GT	./.
chr1	21049260	.	A	.	.	LowGQX	END=21049261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21049262	.	C	.	.	LowGQX	.	GT	./.
chr1	21049263	.	G	.	.	LowGQX	END=21049270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21049271	.	T	.	.	LowGQX	END=21049272	GT	./.
chr1	21049273	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21049274	.	T	.	.	LowGQX	END=21049275	GT	./.
chr1	21049276	.	C	.	.	LowGQX	END=21049278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21049279	.	G	.	.	LowGQX	.	GT	./.
chr1	21049280	.	A	.	.	LowGQX	END=21049281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21049282	.	G	.	.	LowGQX	END=21049283	GT	./.
chr1	21049284	.	C	.	.	LowGQX	END=21049285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21049286	.	T	.	.	LowGQX	.	GT	./.
chr1	21049287	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21049288	.	G	.	.	LowGQX	END=21049289	GT	./.
chr1	21049290	.	G	.	.	LowGQX	END=21049306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21049307	.	T	.	.	LowGQX	END=21049410	GT	./.
chr1	21050117	.	A	.	.	LowGQX	END=21050222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21050223	.	A	.	.	LowGQX	END=21050229	GT	./.
chr1	21050574	.	A	.	.	LowGQX	END=21050746	GT	./.
chr1	21050887	.	A	.	.	LowGQX	END=21050957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21050958	.	C	T	52.84	LowGQ;LowGQX	DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=17.61;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:6.02:84,6,0:60:6:1.000
chr1	21050959	.	T	.	.	LowGQX	END=21051101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21051102	.	G	.	.	LowGQX	.	GT	./.
chr1	21051103	.	C	.	.	LowGQX	END=21051109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21051110	.	G	.	.	LowGQX	.	GT	./.
chr1	21051111	.	C	.	.	LowGQX	END=21051121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21051122	.	T	.	.	LowGQX	.	GT	./.
chr1	21051123	.	C	.	.	LowGQX	END=21051130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21052411	.	A	.	.	LowGQX	END=21052559	GT	./.
chr1	21053481	.	C	.	.	LowGQX	END=21053580	GT	./.
chr1	21053962	.	C	.	.	LowGQX	END=21054088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21054089	.	C	.	.	LowGQX	END=21054096	GT	./.
chr1	21054384	.	A	.	.	LowGQX	END=21054394	GT	./.
chr1	21054395	.	C	.	.	LowGQX	END=21054415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21054416	.	A	.	.	LowGQX	.	GT	./.
chr1	21054417	.	C	.	.	LowGQX	END=21054423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21054424	.	A	.	.	LowGQX	.	GT	./.
chr1	21054425	.	C	.	.	LowGQX	END=21054501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21054502	.	A	.	.	LowGQX	.	GT	./.
chr1	21054503	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21054504	.	A	.	.	LowGQX	.	GT	./.
chr1	21054505	.	G	.	.	LowGQX	END=21054509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21054510	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	21054511	.	G	.	.	LowGQX	END=21054519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21054520	.	A	.	.	LowGQX	.	GT	./.
chr1	21054521	.	G	.	.	LowGQX	END=21054530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21054531	.	T	.	.	LowGQX	.	GT	./.
chr1	21054532	.	C	.	.	LowGQX	END=21054543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21071288	.	A	.	.	LowGQX	END=21071586	GT	./.
chr1	21072034	.	A	.	.	LowGQX	END=21072151	GT	./.
chr1	21074035	.	A	.	.	LowGQX	END=21074150	GT	./.
chr1	21076214	.	A	.	.	LowGQX	END=21076377	GT	./.
chr1	21081821	.	G	.	.	LowGQX	END=21081872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21081873	.	T	.	.	LowGQX	END=21081920	GT	./.
chr1	21083655	.	T	.	.	LowGQX	END=21083806	GT	./.
chr1	21091868	.	A	.	.	LowGQX	END=21091869	GT	./.
chr1	21091870	.	C	.	.	LowGQX	END=21091872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21091873	.	A	.	.	LowGQX	.	GT	./.
chr1	21091874	.	T	.	.	LowGQX	END=21091875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21091876	.	T	.	.	LowGQX	.	GT	./.
chr1	21091877	.	C	.	.	LowGQX	END=21091883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21091884	.	A	.	.	LowGQX	.	GT	./.
chr1	21091885	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21091886	.	G	.	.	LowGQX	.	GT	./.
chr1	21091887	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21091888	.	T	.	.	LowGQX	.	GT	./.
chr1	21091889	.	T	.	.	LowGQX	END=21091904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21091905	.	C	.	.	LowGQX	.	GT	./.
chr1	21091906	.	A	.	.	LowGQX	END=21091920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21091921	.	A	.	.	LowGQX	END=21092057	GT	./.
chr1	21094015	.	G	.	.	LowGQX	END=21094167	GT	./.
chr1	21097421	.	A	.	.	LowGQX	END=21097600	GT	./.
chr1	21099942	.	G	.	.	LowGQX	END=21100047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21100048	.	A	.	.	LowGQX	END=21100105	GT	./.
chr1	21102423	.	C	.	.	LowGQX	END=21102522	GT	./.
chr1	21103088	.	A	.	.	LowGQX	END=21103245	GT	./.
chr1	21106303	.	A	.	.	LowGQX	END=21106406	GT	./.
chr1	21106836	.	A	.	.	LowGQX	END=21106935	GT	./.
chr1	21133810	.	T	.	.	LowGQX	END=21133995	GT	./.
chr1	21137229	.	A	.	.	LowGQX	END=21137233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21137234	.	C	.	.	LowGQX	.	GT	./.
chr1	21137235	.	A	.	.	LowGQX	END=21137239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21137240	.	G	.	.	LowGQX	.	GT	./.
chr1	21137241	.	A	.	.	LowGQX	END=21137244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21137245	.	A	.	.	LowGQX	END=21137246	GT	./.
chr1	21137247	.	T	.	.	LowGQX	END=21137250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21137251	.	A	.	.	LowGQX	.	GT	./.
chr1	21137252	.	C	.	.	LowGQX	END=21137258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21137259	.	T	.	.	LowGQX	END=21137260	GT	./.
chr1	21137261	.	C	.	.	LowGQX	END=21137282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21137283	.	C	.	.	LowGQX	.	GT	./.
chr1	21137284	.	A	.	.	LowGQX	END=21137290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21137291	.	T	.	.	LowGQX	.	GT	./.
chr1	21137292	.	C	.	.	LowGQX	END=21137314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21137315	.	T	.	.	LowGQX	END=21137379	GT	./.
chr1	21139642	.	G	.	.	LowGQX	END=21139741	GT	./.
chr1	21143883	.	A	.	.	LowGQX	END=21144033	GT	./.
chr1	21151591	.	A	.	.	LowGQX	END=21151693	GT	./.
chr1	21154101	.	A	.	.	LowGQX	END=21154200	GT	./.
chr1	21155638	.	A	.	.	LowGQX	END=21155736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21155737	.	C	.	.	LowGQX	.	GT	./.
chr1	21155738	.	A	.	.	LowGQX	END=21155767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21155768	.	G	.	.	LowGQX	END=21155807	GT	./.
chr1	21167347	.	A	.	.	LowGQX	END=21167523	GT	./.
chr1	21174258	.	T	.	.	LowGQX	END=21174357	GT	./.
chr1	21175906	.	A	.	.	LowGQX	END=21175914	GT	./.
chr1	21175915	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175916	.	C	.	.	LowGQX	.	GT	./.
chr1	21175917	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175918	.	T	.	.	LowGQX	.	GT	./.
chr1	21175919	.	T	.	.	LowGQX	END=21175922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175923	.	G	.	.	LowGQX	.	GT	./.
chr1	21175924	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175925	.	G	.	.	LowGQX	.	GT	./.
chr1	21175926	.	T	.	.	LowGQX	END=21175933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175934	.	C	.	.	LowGQX	.	GT	./.
chr1	21175935	.	A	.	.	LowGQX	END=21175942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175943	.	T	.	.	LowGQX	.	GT	./.
chr1	21175944	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175945	.	G	.	.	LowGQX	.	GT	./.
chr1	21175946	.	A	.	.	LowGQX	END=21175948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175949	.	T	.	.	LowGQX	END=21175951	GT	./.
chr1	21175952	.	A	.	.	LowGQX	END=21175953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175954	.	T	.	.	LowGQX	.	GT	./.
chr1	21175955	.	T	.	.	LowGQX	END=21175957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175958	.	T	.	.	LowGQX	.	GT	./.
chr1	21175959	.	C	.	.	LowGQX	END=21175960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175961	.	C	.	.	LowGQX	.	GT	./.
chr1	21175962	.	C	.	.	LowGQX	END=21175963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175964	.	G	.	.	LowGQX	END=21175968	GT	./.
chr1	21175969	.	T	.	.	LowGQX	END=21175970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175971	.	T	.	.	LowGQX	.	GT	./.
chr1	21175972	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175973	.	C	.	.	LowGQX	END=21175975	GT	./.
chr1	21175976	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175977	.	T	.	.	LowGQX	.	GT	./.
chr1	21175978	.	A	.	.	LowGQX	END=21175979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175980	.	T	.	.	LowGQX	END=21175982	GT	./.
chr1	21175983	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175984	.	G	.	.	LowGQX	END=21175985	GT	./.
chr1	21175986	.	C	.	.	LowGQX	END=21175988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175989	.	G	.	.	LowGQX	.	GT	./.
chr1	21175990	.	T	.	.	LowGQX	END=21175993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175994	.	G	.	.	LowGQX	.	GT	./.
chr1	21175995	.	A	.	.	LowGQX	END=21175997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21175998	.	T	.	.	LowGQX	.	GT	./.
chr1	21175999	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21176000	.	A	.	.	LowGQX	.	GT	./.
chr1	21176001	.	C	.	.	LowGQX	END=21176002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21176003	.	T	.	.	LowGQX	END=21176008	GT	./.
chr1	21176009	.	A	.	.	LowGQX	END=21176012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21176013	.	T	.	.	LowGQX	.	GT	./.
chr1	21176014	.	T	.	.	LowGQX	END=21176017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21176018	.	G	.	.	LowGQX	.	GT	./.
chr1	21176019	.	T	.	.	LowGQX	END=21176023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21176024	.	C	.	.	LowGQX	.	GT	./.
chr1	21176025	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21177749	.	A	.	.	LowGQX	END=21177973	GT	./.
chr1	21180051	.	A	.	.	LowGQX	END=21180055	GT	./.
chr1	21180056	.	G	.	.	LowGQX	END=21180172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21181468	.	T	.	.	LowGQX	END=21181567	GT	./.
chr1	21183894	.	A	.	.	LowGQX	END=21183993	GT	./.
chr1	21186876	.	A	.	.	LowGQX	END=21187012	GT	./.
chr1	21188719	.	A	.	.	LowGQX	END=21188827	GT	./.
chr1	21190967	.	A	.	.	LowGQX	END=21191207	GT	./.
chr1	21191607	.	A	.	.	LowGQX	END=21191757	GT	./.
chr1	21205814	.	A	.	.	LowGQX	END=21206015	GT	./.
chr1	21212692	.	A	.	.	LowGQX	END=21212866	GT	./.
chr1	21219057	.	G	.	.	LowGQX	END=21219222	GT	./.
chr1	21219979	.	A	.	.	LowGQX	END=21220032	GT	./.
chr1	21220033	.	T	.	.	LowGQX	END=21220054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21220055	.	G	.	.	LowGQX	.	GT	./.
chr1	21220056	.	G	.	.	LowGQX	END=21220076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21220077	.	C	.	.	LowGQX	.	GT	./.
chr1	21220078	.	G	.	.	LowGQX	END=21220080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21220081	.	G	.	.	LowGQX	.	GT	./.
chr1	21220082	.	C	.	.	LowGQX	END=21220086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21220087	.	T	.	.	LowGQX	.	GT	./.
chr1	21220088	.	T	.	.	LowGQX	END=21220121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21220122	.	T	.	.	LowGQX	.	GT	./.
chr1	21220123	.	G	.	.	LowGQX	END=21220131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21221859	.	A	.	.	LowGQX	END=21221996	GT	./.
chr1	21226188	.	A	.	.	LowGQX	END=21226219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21226220	.	C	.	.	LowGQX	.	GT	./.
chr1	21226221	.	A	.	.	LowGQX	END=21226229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21226230	.	T	.	.	LowGQX	.	GT	./.
chr1	21226231	.	G	.	.	LowGQX	END=21226251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21226252	.	A	.	.	LowGQX	END=21226438	GT	./.
chr1	21231371	.	C	.	.	LowGQX	END=21231470	GT	./.
chr1	21267751	.	C	.	.	LowGQX	END=21267888	GT	./.
chr1	21267982	.	A	.	.	LowGQX	END=21268825	GT	./.
chr1	21276433	.	C	.	.	LowGQX	END=21276606	GT	./.
chr1	21295965	.	A	.	.	LowGQX	END=21296091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21299493	.	A	.	.	LowGQX	END=21299589	GT	./.
chr1	21299590	.	T	.	.	LowGQX	END=21299600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21299601	.	T	.	.	LowGQX	.	GT	./.
chr1	21299602	.	T	.	.	LowGQX	END=21299604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21299605	.	A	.	.	LowGQX	.	GT	./.
chr1	21299606	.	A	.	.	LowGQX	END=21299620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21299621	.	A	.	.	LowGQX	.	GT	./.
chr1	21299622	.	T	.	.	LowGQX	END=21299626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21299627	.	T	.	.	LowGQX	.	GT	./.
chr1	21299628	.	T	.	.	LowGQX	END=21299636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21299637	.	A	.	.	LowGQX	.	GT	./.
chr1	21299638	.	A	.	.	LowGQX	END=21299640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21299641	.	A	.	.	LowGQX	.	GT	./.
chr1	21299642	.	C	.	.	LowGQX	END=21299652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21306765	.	C	.	.	LowGQX	END=21306805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21306806	.	G	.	.	LowGQX	END=21306807	GT	./.
chr1	21306808	.	C	.	.	LowGQX	END=21306840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21306841	.	A	.	.	LowGQX	END=21306993	GT	./.
chr1	21307539	.	A	.	.	LowGQX	END=21307635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21307636	.	T	.	.	LowGQX	.	GT	./.
chr1	21307637	.	G	.	.	LowGQX	END=21307648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21307649	.	A	.	.	LowGQX	.	GT	./.
chr1	21307650	.	C	.	.	LowGQX	END=21307666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21307667	.	A	.	.	LowGQX	.	GT	./.
chr1	21307668	.	C	.	.	LowGQX	END=21307670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21307671	.	C	.	.	LowGQX	.	GT	./.
chr1	21307672	.	T	.	.	LowGQX	END=21307705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21307706	.	A	.	.	LowGQX	.	GT	./.
chr1	21307707	.	G	.	.	LowGQX	END=21307737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21308841	.	T	.	.	LowGQX	END=21308940	GT	./.
chr1	21324000	.	A	.	.	LowGQX	END=21324019	GT	./.
chr1	21324020	.	T	.	.	LowGQX	END=21324025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21324026	.	G	.	.	LowGQX	.	GT	./.
chr1	21324027	.	A	.	.	LowGQX	END=21324031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21324032	.	G	.	.	LowGQX	END=21324033	GT	./.
chr1	21324034	.	A	.	.	LowGQX	END=21324050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21324051	.	T	.	.	LowGQX	.	GT	./.
chr1	21324052	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21324053	.	T	.	.	LowGQX	.	GT	./.
chr1	21324054	.	A	.	.	LowGQX	END=21324077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21324078	.	G	.	.	LowGQX	.	GT	./.
chr1	21324079	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21324080	.	C	.	.	LowGQX	.	GT	./.
chr1	21324081	.	A	.	.	LowGQX	END=21324108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21324109	.	T	.	.	LowGQX	.	GT	./.
chr1	21324110	.	C	.	.	LowGQX	END=21324139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21324140	.	G	.	.	LowGQX	.	GT	./.
chr1	21324141	.	G	.	.	LowGQX	END=21324156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21324157	.	G	.	.	LowGQX	.	GT	./.
chr1	21324158	.	G	.	.	LowGQX	END=21324159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21325287	.	T	.	.	LowGQX	END=21325386	GT	./.
chr1	21325798	.	G	.	.	LowGQX	END=21325874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21325875	.	A	.	.	LowGQX	.	GT	./.
chr1	21325876	.	C	.	.	LowGQX	END=21325897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21326170	.	A	.	.	LowGQX	END=21326269	GT	./.
chr1	21327692	.	A	.	.	LowGQX	END=21327805	GT	./.
chr1	21329201	.	C	.	.	LowGQX	END=21329301	GT	./.
chr1	21377298	.	A	.	.	LowGQX	END=21377536	GT	./.
chr1	21415619	.	T	.	.	LowGQX	END=21415718	GT	./.
chr1	21437796	.	T	.	.	LowGQX	END=21437895	GT	./.
chr1	21494488	.	C	.	.	LowGQX	END=21494587	GT	./.
chr1	21502656	.	T	.	.	LowGQX	END=21502851	GT	./.
chr1	21503154	.	G	.	.	LowGQX	END=21503372	GT	./.
chr1	21546397	.	C	.	.	PASS	END=21546409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	21546410	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:42:60
chr1	21546411	.	C	.	.	PASS	END=21546430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	21546431	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:58:60
chr1	21546432	.	T	.	.	PASS	END=21546436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	21546437	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:64:60
chr1	21546438	.	C	.	.	PASS	END=21546454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	21546455	.	A	.	.	PASS	END=21546563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:87:60
chr1	21546564	.	T	.	.	PASS	END=21546583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr1	21546584	.	C	.	.	PASS	END=21546603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	21546604	.	T	.	.	PASS	END=21546605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	21546606	.	T	.	.	PASS	END=21546608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	21546609	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:15:60
chr1	21546610	.	G	.	.	PASS	END=21546617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	21546618	.	A	.	.	PASS	END=21546622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	21546623	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:60
chr1	21546624	.	C	.	.	PASS	END=21546630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	21546631	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	21546632	.	G	.	.	PASS	END=21546643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	21546644	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:60
chr1	21546645	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:3:60
chr1	21546646	.	A	.	.	PASS	END=21546652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	21546653	.	G	.	.	PASS	END=21546654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	21546655	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr1	21546656	.	C	.	.	PASS	END=21546658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	21546659	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:21:60
chr1	21546660	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	21546661	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	21546662	.	G	.	.	LowGQX	END=21546665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	21546666	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	21546667	.	C	.	.	LowGQX	END=21546668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	21546669	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:60
chr1	21546670	.	C	.	.	LowGQX	END=21546675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	21548189	.	A	.	.	PASS	END=21548287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	21548288	.	G	.	.	PASS	END=21548322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	21548323	.	A	.	.	PASS	END=21548343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	21548344	.	A	.	.	PASS	END=21548351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	21548352	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:61:60
chr1	21548353	.	C	.	.	PASS	END=21548357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	21548358	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:63:60
chr1	21548359	.	T	.	.	PASS	END=21548369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	21548370	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:60:60
chr1	21548371	.	A	.	.	PASS	END=21548386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	21551692	.	T	.	.	LowGQX	END=21551693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	21551694	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	21551695	.	A	.	.	LowGQX	END=21551696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	21551697	.	G	.	.	PASS	END=21551698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	21551699	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	21551700	.	G	.	.	PASS	END=21551702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	21551703	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	21551704	.	G	.	.	PASS	END=21551705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	21551706	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	21551707	.	C	.	.	PASS	END=21551710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	21551711	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:39:60
chr1	21551712	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:19:60
chr1	21551713	.	C	.	.	PASS	END=21551714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	21551715	.	G	.	.	PASS	END=21551727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	21551728	.	G	.	.	PASS	END=21551740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	21551741	.	A	.	.	PASS	END=21551742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:54:60
chr1	21551743	.	C	.	.	PASS	END=21551759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	21551760	.	G	.	.	PASS	END=21551778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:66:60
chr1	21551779	.	G	.	.	PASS	END=21551795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	21551796	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:63:60
chr1	21551797	.	C	.	.	PASS	END=21551799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	21551800	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:57:60
chr1	21551801	.	C	.	.	PASS	END=21551830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	21551831	.	T	.	.	PASS	END=21551845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	21551846	.	A	.	.	PASS	END=21551934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	21551935	.	T	.	.	PASS	END=21551980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	21551981	.	A	.	.	PASS	END=21551984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	21553601	.	A	.	.	PASS	END=21553641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:88:60
chr1	21553642	.	G	.	.	PASS	END=21553763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:82:60
chr1	21553764	.	G	.	.	PASS	END=21553770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	21554373	.	G	.	.	PASS	END=21554406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	21554407	.	C	.	.	PASS	END=21554428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	21554429	.	T	.	.	PASS	END=21554448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	21554449	.	G	.	.	PASS	END=21554523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	21554524	.	T	.	.	PASS	END=21554567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	21554568	.	C	.	.	PASS	END=21554578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	21554579	.	G	.	.	PASS	END=21554585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	21559999	.	T	.	.	PASS	END=21560006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	21560007	.	G	.	.	PASS	END=21560025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	21560026	.	G	.	.	PASS	END=21560038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	21560039	.	G	.	.	PASS	END=21560065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	21560066	.	G	.	.	PASS	END=21560160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	21560161	.	A	.	.	PASS	END=21560190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	21560191	.	C	.	.	PASS	END=21560205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	21562292	.	T	.	.	PASS	END=21562331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	21562332	.	C	.	.	PASS	END=21562409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	21562410	.	A	.	.	PASS	END=21562426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	21562427	.	A	.	.	PASS	END=21562434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	21562435	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:80:27:60
chr1	21562436	.	A	.	.	PASS	END=21562463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	21562464	.	C	.	.	PASS	END=21562471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	21563188	.	T	.	.	PASS	END=21563202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	21563203	.	C	.	.	PASS	END=21563223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	21563224	.	C	.	.	PASS	END=21563335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	21563336	.	G	.	.	PASS	END=21563353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	21563354	.	C	.	.	PASS	END=21563366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	21563367	.	T	.	.	PASS	END=21563370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	21563371	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:64:60
chr1	21563372	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:99:60
chr1	21563373	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:75:60
chr1	21563374	.	A	.	.	PASS	END=21563388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	21564576	.	G	.	.	PASS	END=21564593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	21564594	.	C	.	.	PASS	END=21564624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	21564625	.	A	.	.	PASS	END=21564671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	21564672	.	G	.	.	PASS	END=21564738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	21564739	.	T	.	.	PASS	END=21564781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	21564782	.	T	.	.	PASS	END=21564788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	21571431	.	C	.	.	PASS	END=21571448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	21571449	.	C	.	.	PASS	END=21571463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	21571464	.	A	.	.	PASS	END=21571474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	21571475	.	G	A	1930.58	PASS	BaseQRankSum=1.588;DP=225;Dels=0.00;FS=5.948;HRun=1;HaplotypeScore=19.9885;MQ=60;MQ0=0;MQRankSum=-0.997;QD=8.58;ReadPosRankSum=-1.368;SB=-816.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:139,84:225:99:1961,0,3489:60:99:0.377
chr1	21571476	.	G	.	.	PASS	END=21571587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	21571588	.	T	.	.	PASS	END=21571607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	21571608	.	G	.	.	PASS	END=21571619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	21571620	.	G	.	.	PASS	END=21571639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	21571640	.	G	.	.	PASS	END=21571647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	21573663	.	A	.	.	PASS	END=21573674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	21573675	.	T	.	.	PASS	END=21573708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	21573709	.	C	.	.	PASS	END=21573738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	21573739	.	T	.	.	PASS	END=21573812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	21573813	.	A	.	.	PASS	END=21573844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	21573845	.	G	.	.	PASS	END=21573854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	21573855	.	G	A	653.81	PASS	BaseQRankSum=1.680;DP=78;Dels=0.00;FS=6.857;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=1.320;QD=8.38;ReadPosRankSum=0.196;SB=-149.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:52,26:78:99:684,0,1148:60:99:0.333
chr1	21573856	.	T	.	.	PASS	END=21573876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	21573877	.	G	.	.	PASS	END=21573883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	21573884	.	T	.	.	PASS	END=21573891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr1	21573892	.	T	.	.	PASS	END=21573898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	21573899	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:45:60
chr1	21573900	.	C	.	.	PASS	END=21573907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	21582389	.	C	.	.	PASS	END=21582415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	21582416	.	C	.	.	PASS	END=21582453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	21582454	.	C	.	.	PASS	END=21582488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	21582489	.	C	.	.	PASS	END=21582566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	21582567	.	T	.	.	PASS	END=21582614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	21582615	.	A	.	.	PASS	END=21582648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	21582649	.	C	.	.	PASS	END=21582679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	21582680	.	A	.	.	PASS	END=21582682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	21583967	.	G	.	.	PASS	END=21583991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	21583992	.	G	.	.	PASS	END=21584080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	21584081	.	C	.	.	PASS	END=21584114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	21584115	.	C	.	.	PASS	END=21584134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	21585135	.	G	.	.	PASS	END=21585158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	21585159	.	G	.	.	PASS	END=21585174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	21585175	.	A	.	.	PASS	END=21585224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	21585225	.	G	.	.	PASS	END=21585265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	21585266	.	T	.	.	PASS	END=21585320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	21585321	.	C	.	.	PASS	END=21585346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	21585347	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:69:60
chr1	21585348	.	G	.	.	PASS	END=21585352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	21585353	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:60:60
chr1	21585354	.	A	.	.	PASS	END=21585368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	21585369	.	T	.	.	PASS	END=21585376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	21585377	.	A	.	.	PASS	END=21585383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	21586713	.	G	.	.	PASS	END=21586732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	21586733	.	G	.	.	PASS	END=21586839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	21586840	.	A	.	.	PASS	END=21586844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	21586845	.	C	.	.	PASS	END=21586896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:78:60
chr1	21586897	.	G	.	.	PASS	END=21586935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	21586936	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:93:60
chr1	21599141	.	T	.	.	PASS	END=21599161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	21599162	.	C	.	.	PASS	END=21599198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	21599199	.	G	.	.	PASS	END=21599244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	21599245	.	C	.	.	PASS	END=21599340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	21599341	.	A	.	.	PASS	END=21599388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	21599389	.	C	.	.	PASS	END=21599411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	21599412	.	G	.	.	PASS	END=21599434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:60
chr1	21599435	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:60
chr1	21599436	.	G	.	.	PASS	END=21599448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	21599449	.	A	.	.	PASS	END=21599450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	21599451	.	A	.	.	PASS	END=21599454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	21599455	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:69:60
chr1	21605633	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:69:60
chr1	21605634	.	G	.	.	PASS	END=21605648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	21605649	.	G	.	.	PASS	END=21605657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	21605658	.	C	.	.	PASS	END=21605674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	21605675	.	G	.	.	PASS	END=21605732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	21605733	.	C	.	.	PASS	END=21605807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	21605808	.	G	.	.	PASS	END=21605822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	21605823	.	C	.	.	PASS	END=21605872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	21605873	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:72:60
chr1	21605874	.	C	.	.	PASS	END=21605895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:60
chr1	21605896	.	T	.	.	PASS	END=21605921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	21605922	.	A	.	.	PASS	END=21605927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	21616452	.	G	.	.	PASS	END=21616461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr1	21616462	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:75:60
chr1	21616463	.	G	.	.	PASS	END=21616492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	21616493	.	C	.	.	PASS	END=21616504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	21616505	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:28:60
chr1	21616506	.	G	.	.	PASS	END=21616511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	21616512	.	A	.	.	PASS	END=21616514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	21616515	.	C	.	.	PASS	END=21616533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	21616534	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:99:60
chr1	21616535	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:45:60
chr1	21616536	.	C	.	.	PASS	END=21616546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	21616547	.	A	.	.	PASS	END=21616577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	21616578	.	G	.	.	PASS	END=21616629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	21616630	.	G	.	.	PASS	END=21616695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	21616696	.	C	.	.	PASS	END=21616726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	21616727	.	C	.	.	PASS	END=21616740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	21616746	.	G	.	.	PASS	END=21616764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:94:60
chr1	21616765	.	A	.	.	PASS	END=21616779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	21616780	.	C	.	.	PASS	END=21616791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	21616792	.	C	.	.	PASS	END=21616796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	21616797	.	C	.	.	LowGQX	END=21616807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	21616808	.	G	.	.	LowGQX	END=21616812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	21616813	.	C	.	.	LowGQX	END=21616818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	21616819	.	G	.	.	LowGQX	END=21616821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21616822	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	21616823	.	C	.	.	LowGQX	END=21616825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21616826	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	21616827	.	C	.	.	LowGQX	END=21616835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21616836	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	21616837	.	C	.	.	LowGQX	END=21616838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	21616839	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	21616840	.	G	.	.	LowGQX	END=21616845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	21616846	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	21616847	.	C	.	.	LowGQX	END=21616860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21616861	.	A	.	.	LowGQX	.	GT	./.
chr1	21616862	.	G	.	.	LowGQX	END=21616867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21616868	.	A	.	.	LowGQX	.	GT	./.
chr1	21616869	.	C	.	.	LowGQX	END=21616891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	21616892	.	G	.	.	LowGQX	END=21616895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	21616896	.	C	.	.	LowGQX	END=21616912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	21616913	.	G	.	.	PASS	END=21616919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	21616920	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	21616921	.	C	.	.	PASS	END=21616923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	21616924	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	21616925	.	T	.	.	PASS	END=21616931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	21616932	.	G	T	147.39	PASS	BaseQRankSum=0.101;DP=13;Dels=0.00;FS=2.522;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=2.627;QD=11.34;ReadPosRankSum=0.555;SB=-102.73	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:6,7:13:99:177,0,172:60:99:0.538
chr1	21616933	.	C	.	.	PASS	END=21616945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	21616946	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	21616947	.	G	.	.	PASS	END=21616950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	21616951	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	21616952	.	G	.	.	PASS	END=21616958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	21625265	.	G	.	.	LowGQX	END=21625364	GT	./.
chr1	21671760	.	G	.	.	LowGQX	END=21671789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	21671790	.	G	.	.	LowGQX	END=21671811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	21671812	.	G	.	.	LowGQX	END=21671835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	21671836	.	G	.	.	LowGQX	END=21671837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	21671838	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr1	21671839	.	C	.	.	LowGQX	END=21671841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	21671842	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	21671843	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	21671844	.	C	.	.	PASS	END=21671845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	21671846	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	21671847	.	G	.	.	PASS	END=21671848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	21671849	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	21671850	.	C	.	.	PASS	END=21671876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	21671877	.	G	.	.	PASS	END=21671878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	21671879	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	21671880	.	T	.	.	PASS	END=21671895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	21671896	.	C	.	.	LowGQX	END=21671919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	21771538	.	C	.	.	LowGQX	END=21771587	GT	./.
chr1	21771588	.	G	.	.	LowGQX;LowMQ	END=21771627	GT	./.
chr1	21771628	.	C	.	.	LowGQX	END=21771714	GT	./.
chr1	21795179	.	A	.	.	LowGQX	END=21795191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	21795192	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	21795193	.	C	.	.	LowGQX	END=21795259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	21795260	.	G	.	.	LowGQX	END=21795287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21795288	.	C	T	44.20	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=22.10;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:75,6,0:60:6:1.000
chr1	21795289	.	G	.	.	LowGQX	END=21795302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21795303	.	G	.	5.79	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr1	21795304	.	A	.	.	LowGQX	END=21795316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21795317	.	G	.	.	LowGQX	END=21795382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	21795383	.	T	.	.	LowGQX	END=21795392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	21797067	.	G	.	.	LowGQX	END=21797229	GT	./.
chr1	21798060	.	A	.	.	LowGQX	END=21798064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	21798065	.	A	.	.	LowGQX	END=21798084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	21798085	.	C	.	.	LowGQX	END=21798106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	21798107	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	21798108	.	T	.	.	LowGQX	END=21798143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	21798144	.	C	T	83.81	PASS	BaseQRankSum=0.322;DP=8;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.322;QD=10.48;ReadPosRankSum=0.322;SB=-66.60	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,5:8:61.27:114,0,61:60:61:0.625
chr1	21798145	.	G	.	.	LowGQX	END=21798205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	21798206	.	A	.	.	LowGQX	END=21798248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	21798249	.	C	G	39.61	SB	BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=13.20;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:30.29:70,0,30:60:30:0.667
chr1	21798250	.	A	.	.	LowGQX	END=21798278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	21799263	.	G	.	.	LowGQX	END=21799422	GT	./.
chr1	21799871	.	A	.	.	LowGQX	END=21799872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	21799873	.	G	.	.	LowGQX	END=21799880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	21799881	.	A	.	.	LowGQX	END=21799884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	21799885	.	G	.	.	LowGQX	END=21799886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	21799887	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr1	21799888	.	T	.	.	LowGQX	END=21799890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	21799891	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	21799892	.	G	.	.	LowGQX	END=21799921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	21799922	.	G	.	.	LowGQX	END=21799965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	21799966	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	21799967	.	A	.	.	LowGQX	END=21799984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	21799985	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:60
chr1	21799986	.	C	.	.	LowGQX	END=21800008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	21800009	.	C	.	.	LowGQX	END=21800023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	21800024	.	C	.	.	LowGQX	END=21800043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	21800044	.	T	.	.	LowGQX	END=21800057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	21800058	.	A	.	.	LowGQX	END=21800069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	21800070	.	T	.	.	LowGQX	END=21800072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	21800073	.	T	.	.	LowGQX	END=21800080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21801369	.	C	.	.	PASS	END=21801457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	21801458	.	A	.	.	PASS	END=21801466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	21801467	.	T	.	.	PASS	END=21801468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	21804561	.	G	.	.	LowGQX	END=21804578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	21804579	.	G	.	.	LowGQX	END=21804600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	21804601	.	T	.	.	LowGQX	END=21804608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	21804609	.	G	.	.	LowGQX	END=21804618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	21804619	.	T	.	.	LowGQX	END=21804629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	21804630	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	21804631	.	C	.	.	LowGQX	END=21804648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	21804649	.	G	.	.	LowGQX	END=21804650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:60
chr1	21804651	.	C	.	.	LowGQX	END=21804678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	21804679	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:0:60
chr1	21804680	.	T	.	.	LowGQX	END=21804690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	21804691	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	21804692	.	G	.	.	LowGQX	END=21804701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	21804702	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	21804703	.	C	.	.	LowGQX	END=21804735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	21804736	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	21804737	.	T	.	.	LowGQX	END=21804739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	21804740	.	G	.	.	LowGQX	END=21804758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	21804759	.	C	.	.	LowGQX	END=21804768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	21804769	.	A	.	.	LowGQX	END=21804775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	21804776	.	G	.	4.58	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.01:60:0
chr1	21804777	.	T	.	.	LowGQX	END=21804778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	21804779	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	21804780	.	G	.	.	LowGQX	END=21804785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	21804786	.	C	.	39.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.02:60:9
chr1	21804787	.	T	.	.	LowGQX	END=21804802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	21805818	.	G	.	.	LowGQX	END=21805850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	21805851	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	21805852	.	T	.	.	LowGQX	END=21805916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21805917	.	G	T	9.30	LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr1	21806542	.	A	.	.	LowGQX	END=21806718	GT	./.
chr1	21807399	.	T	.	.	LowGQX	END=21807403	GT	./.
chr1	21807404	.	C	.	.	LowGQX	END=21807408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	21807409	.	T	.	2.30	LowGQX	DP=1;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:27:0
chr1	21807410	.	G	.	.	LowGQX	END=21807498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	21808077	.	T	.	.	LowGQX	END=21808158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	21808159	.	G	A	14.86	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=27;MQ0=0;QD=7.43;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:27:3:1.000
chr1	21808160	.	A	.	.	LowGQX	END=21808189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	21808190	.	T	.	.	LowGQX	.	GT	./.
chr1	21808191	.	C	.	.	LowGQX	END=21808206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	21808207	.	A	.	2.30	LowGQX	DP=1;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:27:0
chr1	21808208	.	A	.	.	LowGQX	END=21808222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	21808223	.	T	.	2.30	LowGQX	DP=1;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:27:0
chr1	21808224	.	T	.	.	LowGQX	END=21808270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	21808271	.	C	.	.	LowGQX	END=21808297	GT	./.
chr1	21808893	.	C	.	.	LowGQX;LowMQ	END=21808897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:3:7
chr1	21808898	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	21808899	.	G	.	.	LowGQX;LowMQ	END=21808909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:3:7
chr1	21808910	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	21808911	.	C	.	.	LowGQX;LowMQ	END=21808912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:7
chr1	21808913	.	G	.	.	LowGQX;LowMQ	END=21808914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:3:6
chr1	21808915	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	21808916	.	G	.	.	LowGQX;LowMQ	END=21808926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:3:5
chr1	21808927	.	G	.	.	LowGQX;LowMQ	END=21808933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:3:4
chr1	21808934	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	21808935	.	G	.	.	LowGQX;LowMQ	END=21808948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:3:4
chr1	21808949	.	T	.	.	LowGQX;LowMQ	END=21809052	GT	./.
chr1	21809623	.	T	.	.	LowGQX	END=21809881	GT	./.
chr1	21880524	.	C	.	.	PASS	END=21880530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	21880531	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:57:60
chr1	21880532	.	G	.	.	PASS	END=21880533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	21880534	.	A	.	.	PASS	END=21880535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	21880536	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:42:60
chr1	21880537	.	T	.	.	PASS	END=21880545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	21880546	.	C	.	.	PASS	END=21880559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	21880560	.	G	.	.	PASS	END=21880587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	21880588	.	T	.	.	PASS	END=21880616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	21880617	.	A	.	.	PASS	END=21880670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	21880671	.	T	.	.	PASS	END=21880686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	21887068	.	G	.	.	PASS	END=21887078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	21887079	.	A	.	.	PASS	END=21887102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	21887103	.	C	.	.	PASS	END=21887153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	21887154	.	G	.	.	PASS	END=21887229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	21887230	.	T	.	.	PASS	END=21887263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	21887264	.	G	.	.	PASS	END=21887289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	21887539	.	G	.	.	PASS	END=21887556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	21887557	.	A	.	.	PASS	END=21887583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	21887584	.	C	.	.	PASS	END=21887697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	21887698	.	T	.	.	PASS	END=21887707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	21887708	.	G	.	.	PASS	END=21887727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	21887728	.	G	.	.	PASS	END=21887747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	21887748	.	T	.	.	PASS	END=21887756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	21889552	.	C	.	.	PASS	END=21889572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	21889573	.	C	.	.	PASS	END=21889581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	21889582	.	A	.	.	PASS	END=21889605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	21889606	.	T	.	.	PASS	END=21889634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	21889635	.	T	C	5809.54	PASS	BaseQRankSum=-2.191;DP=237;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=15.3617;MQ=60;MQ0=0;MQRankSum=-0.161;QD=24.51;ReadPosRankSum=0.357;SB=-3783.87	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,235:237:99:5810,361,0:60:99:0.992
chr1	21889636	.	G	.	.	PASS	END=21889733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	21889734	.	G	.	.	PASS	END=21889756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	21889757	.	T	.	.	PASS	END=21889772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	21889773	.	C	.	.	PASS	END=21889793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	21889794	.	G	.	.	PASS	END=21889819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	21889820	.	C	.	.	PASS	END=21889828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	21890483	.	G	.	.	PASS	END=21890507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	21890508	.	C	.	.	PASS	END=21890538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	21890539	.	T	.	.	PASS	END=21890562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	21890563	.	A	.	.	PASS	END=21890701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr1	21890702	.	A	.	.	PASS	END=21890716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	21890717	.	C	.	.	PASS	END=21890735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	21890736	.	G	.	.	PASS	END=21890753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	21890754	.	C	.	.	PASS	END=21890760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	21894546	.	C	.	.	PASS	END=21894565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	21894566	.	C	.	.	PASS	END=21894607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	21894608	.	G	.	.	PASS	END=21894680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	21894681	.	A	.	.	PASS	END=21894710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	21894711	.	A	.	.	PASS	END=21894736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	21894737	.	C	.	.	PASS	END=21894757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	21894758	.	C	.	.	PASS	END=21894776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	21894777	.	C	.	.	PASS	END=21894788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	21894789	.	A	.	.	PASS	END=21894791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	21896731	.	C	.	.	PASS	END=21896754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:90:60
chr1	21896755	.	C	.	.	PASS	END=21896836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:88:60
chr1	21896837	.	C	.	.	PASS	END=21896878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:79:60
chr1	21896879	.	G	.	.	PASS	END=21896883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:75:60
chr1	21896884	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:46:60
chr1	21896885	.	A	.	.	PASS	END=21896897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	21896898	.	T	.	.	PASS	END=21896908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	21896909	.	C	.	.	PASS	END=21896912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	21896913	.	T	.	.	PASS	END=21896918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	21900107	.	T	.	.	PASS	END=21900138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	21900139	.	C	.	.	PASS	END=21900242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	21900243	.	C	.	.	PASS	END=21900272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	21900273	.	C	.	.	PASS	END=21900308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	21900309	.	T	.	.	PASS	END=21900343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	21902175	.	A	.	.	PASS	END=21902196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	21902197	.	C	.	.	PASS	END=21902219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	21902220	.	C	.	.	PASS	END=21902274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	21902275	.	G	.	.	PASS	END=21902382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	21902383	.	T	.	.	PASS	END=21902423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	21902424	.	G	.	.	PASS	END=21902453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	21902454	.	T	.	.	PASS	END=21902468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	21902964	.	C	.	.	PASS	END=21902987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	21902988	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:75:60
chr1	21902989	.	C	.	.	PASS	END=21902997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	21902998	.	A	.	58.29	LowGQX	DP=68;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:49:68:28.30:60:28
chr1	21902999	.	C	.	.	PASS	END=21903008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	21903009	.	G	.	.	PASS	END=21903035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	21903036	.	A	.	.	PASS	END=21903140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	21903141	.	C	.	.	PASS	END=21903156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	21903157	.	C	.	.	PASS	END=21903170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	21903171	.	G	.	.	PASS	END=21903179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	21903180	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:76:60
chr1	21903181	.	G	.	.	PASS	END=21903185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	21903825	.	C	.	.	PASS	END=21903849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	21903850	.	C	.	.	PASS	END=21903870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	21903871	.	C	.	.	PASS	END=21903891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	21903892	.	G	.	.	PASS	END=21903922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	21903923	.	A	.	.	PASS	END=21903980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	21903981	.	A	.	.	PASS	END=21904064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	21904065	.	C	.	.	PASS	END=21904112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	21904113	.	C	.	.	PASS	END=21904132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	21904133	.	C	.	.	PASS	END=21904146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	21904147	.	C	.	.	PASS	END=21904167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	21904168	.	C	.	.	PASS	END=21904171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	21904172	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:63:60
chr1	21904173	.	G	.	.	PASS	END=21904178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	21904179	.	T	.	.	PASS	END=21904180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	21904181	.	C	.	.	PASS	END=21904187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	21904188	.	C	.	.	PASS	END=21904190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:99:60
chr1	21904191	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:66:60
chr1	21904192	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:99:60
chr1	21924168	.	C	.	.	LowGQX	END=21924203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21924204	.	G	T	3.07	LowGQX;LowQD;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=1.53;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:30,0,33:60:3:0.500
chr1	21924205	.	T	.	.	LowGQX	END=21924227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21924228	.	A	.	.	LowGQX	.	GT	./.
chr1	21924229	.	C	.	.	LowGQX	END=21924250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21924251	.	T	.	.	LowGQX	.	GT	./.
chr1	21924252	.	G	.	.	LowGQX	END=21924266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21924267	.	G	.	.	LowGQX	.	GT	./.
chr1	21924396	.	A	.	.	LowGQX	END=21924515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21924516	.	C	.	.	LowGQX	END=21924559	GT	./.
chr1	21924891	.	A	.	.	LowGQX	END=21924980	GT	./.
chr1	21924981	.	G	.	.	LowGQX	END=21924996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21924997	.	T	.	.	LowGQX	.	GT	./.
chr1	21925985	.	A	.	.	LowGQX	END=21926112	GT	./.
chr1	21928175	.	A	.	.	LowGQX	END=21928292	GT	./.
chr1	21929295	.	A	.	.	LowGQX	END=21929408	GT	./.
chr1	21929983	.	G	.	.	LowGQX	END=21930120	GT	./.
chr1	21930121	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21930122	.	G	.	.	LowGQX	.	GT	./.
chr1	21930123	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21930124	.	G	.	.	LowGQX	.	GT	./.
chr1	21930125	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21930126	.	G	.	.	LowGQX	.	GT	./.
chr1	21930127	.	G	.	.	LowGQX	END=21930145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21930146	.	G	.	.	LowGQX	END=21930147	GT	./.
chr1	21930148	.	T	.	.	LowGQX	END=21930151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21930152	.	A	.	.	LowGQX	.	GT	./.
chr1	21930153	.	G	.	.	LowGQX	END=21930164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21930165	.	G	.	.	LowGQX	.	GT	./.
chr1	21930166	.	G	.	.	LowGQX	END=21930177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21930178	.	A	.	.	LowGQX	.	GT	./.
chr1	21930179	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21930180	.	C	.	.	LowGQX	.	GT	./.
chr1	21930181	.	G	.	.	LowGQX	END=21930184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21930185	.	C	.	.	LowGQX	.	GT	./.
chr1	21930186	.	T	.	.	LowGQX	END=21930189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21930190	.	G	.	.	LowGQX	.	GT	./.
chr1	21930191	.	C	.	.	LowGQX	END=21930195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21930196	.	C	.	.	LowGQX	.	GT	./.
chr1	21930197	.	C	.	.	LowGQX	END=21930211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21930212	.	G	.	.	LowGQX	END=21930213	GT	./.
chr1	21930214	.	G	.	.	LowGQX	END=21930218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21930219	.	G	.	.	LowGQX	.	GT	./.
chr1	21930220	.	T	.	.	LowGQX	END=21930225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21930226	.	G	.	.	LowGQX	.	GT	./.
chr1	21930227	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	21930228	.	G	.	.	LowGQX	END=21930234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	21930235	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	21930236	.	G	.	.	LowGQX	END=21930251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	21930252	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	21930253	.	G	.	.	LowGQX	END=21930339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21930340	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr1	21930341	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	21930342	.	C	.	.	LowGQX	END=21930346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	21930347	.	C	.	.	LowGQX	END=21930348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	21930349	.	T	.	.	LowGQX	END=21930358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	21930359	.	C	.	.	LowGQX	END=21930360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21930361	.	C	.	.	LowGQX	.	GT	./.
chr1	21930362	.	C	.	.	LowGQX	END=21930369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21930370	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	21930371	.	A	.	.	LowGQX	END=21930374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	21930375	.	T	.	.	LowGQX	.	GT	./.
chr1	21930376	.	A	.	.	LowGQX	END=21930379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	21930380	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	21930381	.	C	.	.	LowGQX	END=21930384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21930385	.	T	.	.	LowGQX	.	GT	./.
chr1	21930386	.	T	.	.	LowGQX	END=21930405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	21932557	.	A	.	.	LowGQX	END=21932692	GT	./.
chr1	21934704	.	A	.	.	LowGQX	END=21934845	GT	./.
chr1	21935337	.	C	.	.	LowGQX	END=21935373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21935374	.	C	.	.	LowGQX	END=21935436	GT	./.
chr1	21935996	.	G	.	.	LowGQX	END=21936153	GT	./.
chr1	21936611	.	A	.	.	LowGQX	END=21936770	GT	./.
chr1	21937943	.	A	.	.	LowGQX	END=21938076	GT	./.
chr1	21938207	.	A	.	.	LowGQX	END=21938311	GT	./.
chr1	21938511	.	G	.	.	LowGQX	END=21938584	GT	./.
chr1	21938585	.	G	.	.	LowGQX	END=21938610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21939632	.	C	.	.	LowGQX	END=21939731	GT	./.
chr1	21940111	.	G	.	.	LowGQX	END=21940210	GT	./.
chr1	21940477	.	A	.	.	LowGQX	END=21940584	GT	./.
chr1	21943797	.	A	.	.	LowGQX	END=21943986	GT	./.
chr1	21944397	.	A	.	.	LowGQX	END=21944496	GT	./.
chr1	21945492	.	G	.	.	LowGQX	END=21945591	GT	./.
chr1	21946475	.	G	.	.	LowGQX	END=21946574	GT	./.
chr1	21948760	.	C	.	.	LowGQX	END=21948918	GT	./.
chr1	21952794	.	T	.	.	LowGQX	END=21952822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21952823	.	A	.	.	LowGQX	END=21952893	GT	./.
chr1	21953385	.	T	.	.	LowGQX	END=21953484	GT	./.
chr1	21961214	.	T	.	.	LowGQX	END=21961218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21961219	.	A	.	.	LowGQX	.	GT	./.
chr1	21961220	.	G	.	.	LowGQX	END=21961223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21961224	.	A	.	.	LowGQX	.	GT	./.
chr1	21961225	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21961226	.	A	.	.	LowGQX	.	GT	./.
chr1	21961227	.	G	.	.	LowGQX	END=21961228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21961229	.	A	.	.	LowGQX	.	GT	./.
chr1	21961230	.	T	.	.	LowGQX	END=21961235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21961236	.	A	.	.	LowGQX	END=21961237	GT	./.
chr1	21961238	.	C	.	.	LowGQX	END=21961239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21961240	.	A	.	.	LowGQX	.	GT	./.
chr1	21961241	.	G	.	.	LowGQX	END=21961242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21961243	.	C	.	.	LowGQX	.	GT	./.
chr1	21961244	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21961245	.	A	.	.	LowGQX	END=21961313	GT	./.
chr1	21976222	.	C	.	.	LowGQX	END=21976321	GT	./.
chr1	21977884	.	C	.	.	LowGQX	END=21977911	GT	./.
chr1	21977912	.	C	.	.	LowGQX	END=21977920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21977921	.	A	.	.	LowGQX	.	GT	./.
chr1	21977922	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21977923	.	A	.	.	LowGQX	.	GT	./.
chr1	21977924	.	C	.	.	LowGQX	END=21977937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21977938	.	C	.	.	LowGQX	END=21977939	GT	./.
chr1	21977940	.	G	.	.	LowGQX	END=21977959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21977960	.	C	.	.	LowGQX	.	GT	./.
chr1	21977961	.	C	.	.	LowGQX	END=21977974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21977975	.	A	.	.	LowGQX	.	GT	./.
chr1	21977976	.	G	.	.	LowGQX	END=21978034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21978035	.	C	.	.	LowGQX	END=21978036	GT	./.
chr1	21978037	.	C	.	.	LowGQX	END=21978068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21978069	.	A	.	.	LowGQX	.	GT	./.
chr1	21978070	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21978071	.	A	.	.	LowGQX	.	GT	./.
chr1	21978072	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21978073	.	A	.	.	LowGQX	.	GT	./.
chr1	21978074	.	C	.	.	LowGQX	END=21978088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21978089	.	A	.	.	LowGQX	.	GT	./.
chr1	21978090	.	C	.	.	LowGQX	END=21978105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21978106	.	A	.	.	LowGQX	.	GT	./.
chr1	21978107	.	C	.	.	LowGQX	END=21978119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21978120	.	A	.	.	LowGQX	.	GT	./.
chr1	21978121	.	T	.	.	LowGQX	END=21978124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	21978125	.	C	.	.	LowGQX	END=21978162	GT	./.
chr1	21978184	.	A	.	.	LowGQX	END=21978343	GT	./.
chr1	21991704	.	C	.	.	LowGQX	END=21991810	GT	./.
chr1	21995665	.	C	.	.	LowGQX	END=21995824	GT	./.
chr1	22005818	.	A	.	.	LowGQX	END=22005971	GT	./.
chr1	22007209	.	A	.	.	LowGQX	END=22007364	GT	./.
chr1	22013644	.	A	.	.	LowGQX	END=22013726	GT	./.
chr1	22013727	.	A	.	.	LowGQX	END=22013732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22013733	.	C	.	.	LowGQX	.	GT	./.
chr1	22013734	.	T	.	.	LowGQX	END=22013743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22016465	.	A	.	.	LowGQX	END=22016594	GT	./.
chr1	22021557	.	A	.	.	LowGQX	END=22021716	GT	./.
chr1	22027989	.	A	.	.	LowGQX	END=22027994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22027995	.	T	.	.	LowGQX	.	GT	./.
chr1	22027996	.	T	.	.	LowGQX	END=22027998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22027999	.	A	.	.	LowGQX	.	GT	./.
chr1	22028000	.	A	.	.	LowGQX	END=22028015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22028016	.	C	.	.	LowGQX	.	GT	./.
chr1	22028017	.	C	.	.	LowGQX	END=22028055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22028056	.	A	.	.	LowGQX	END=22028057	GT	./.
chr1	22028058	.	C	.	.	LowGQX	END=22028061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22028062	.	T	.	.	LowGQX	.	GT	./.
chr1	22028063	.	C	.	.	LowGQX	END=22028072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22028073	.	T	.	.	LowGQX	.	GT	./.
chr1	22028074	.	C	.	.	LowGQX	END=22028075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22028076	.	G	.	.	LowGQX	.	GT	./.
chr1	22028077	.	G	.	.	LowGQX	END=22028082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22028083	.	A	.	.	LowGQX	.	GT	./.
chr1	22028084	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22028085	.	T	.	.	LowGQX	.	GT	./.
chr1	22028086	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22028087	.	C	.	.	LowGQX	END=22028088	GT	./.
chr1	22028089	.	T	.	.	LowGQX	END=22028092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22028093	.	C	.	.	LowGQX	.	GT	./.
chr1	22028094	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22028095	.	C	.	.	LowGQX	.	GT	./.
chr1	22028096	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22028097	.	T	.	.	LowGQX	.	GT	./.
chr1	22030003	.	A	.	.	LowGQX	END=22030113	GT	./.
chr1	22030753	.	A	.	.	LowGQX	END=22030887	GT	./.
chr1	22032218	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22032219	.	C	.	.	LowGQX	.	GT	./.
chr1	22032220	.	A	.	.	LowGQX	END=22032227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22032228	.	A	.	.	LowGQX	.	GT	./.
chr1	22032229	.	T	.	.	LowGQX	END=22032233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22032234	.	T	.	.	LowGQX	.	GT	./.
chr1	22032235	.	T	.	.	LowGQX	END=22032239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22032240	.	C	.	.	LowGQX	.	GT	./.
chr1	22032241	.	A	.	.	LowGQX	END=22032265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22032266	.	C	.	.	LowGQX	.	GT	./.
chr1	22032267	.	C	.	.	LowGQX	END=22032276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22032277	.	C	.	.	LowGQX	.	GT	./.
chr1	22032278	.	A	.	.	LowGQX	END=22032293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22032294	.	C	.	.	LowGQX	.	GT	./.
chr1	22032295	.	C	.	.	LowGQX	END=22032297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22032298	.	A	.	.	LowGQX	.	GT	./.
chr1	22032299	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22032300	.	T	.	.	LowGQX	END=22032332	GT	./.
chr1	22032600	.	A	.	.	LowGQX	END=22032686	GT	./.
chr1	22032687	.	C	.	.	LowGQX	END=22032699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22032958	.	A	.	.	LowGQX	END=22032995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22032996	.	C	.	.	LowGQX	END=22032997	GT	./.
chr1	22032998	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22032999	.	G	.	.	LowGQX	.	GT	./.
chr1	22033000	.	A	.	.	LowGQX	END=22033010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033011	.	G	.	.	LowGQX	.	GT	./.
chr1	22033012	.	A	.	.	LowGQX	END=22033014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033015	.	G	.	.	LowGQX	.	GT	./.
chr1	22033016	.	A	.	.	LowGQX	END=22033022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033023	.	T	.	.	LowGQX	.	GT	./.
chr1	22033024	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033025	.	G	.	.	LowGQX	.	GT	./.
chr1	22033026	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033027	.	T	.	.	LowGQX	.	GT	./.
chr1	22033028	.	C	.	.	LowGQX	END=22033029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033030	.	T	.	.	LowGQX	END=22033031	GT	./.
chr1	22033032	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033033	.	G	.	.	LowGQX	.	GT	./.
chr1	22033034	.	C	.	.	LowGQX	END=22033039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033040	.	T	.	.	LowGQX	.	GT	./.
chr1	22033041	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033042	.	T	.	.	LowGQX	END=22033043	GT	./.
chr1	22033044	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033045	.	T	.	.	LowGQX	.	GT	./.
chr1	22033046	.	G	.	.	LowGQX	END=22033049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033050	.	G	.	.	LowGQX	END=22033051	GT	./.
chr1	22033052	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033053	.	T	.	.	LowGQX	.	GT	./.
chr1	22033054	.	T	.	.	LowGQX	END=22033056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033057	.	T	.	.	LowGQX	.	GT	./.
chr1	22033058	.	T	.	.	LowGQX	END=22033060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033061	.	C	.	.	LowGQX	END=22033063	GT	./.
chr1	22033064	.	C	.	.	LowGQX	END=22033070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033071	.	T	.	.	LowGQX	.	GT	./.
chr1	22033072	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033073	.	T	.	.	LowGQX	.	GT	./.
chr1	22033074	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033075	.	T	.	.	LowGQX	END=22033076	GT	./.
chr1	22033077	.	T	.	.	LowGQX	END=22033078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033079	.	A	.	.	LowGQX	END=22033080	GT	./.
chr1	22033081	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033082	.	T	.	.	LowGQX	.	GT	./.
chr1	22033083	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033084	.	T	.	.	LowGQX	.	GT	./.
chr1	22033235	.	A	.	.	LowGQX	END=22033237	GT	./.
chr1	22033238	.	T	.	.	LowGQX	END=22033242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033243	.	C	.	.	LowGQX	.	GT	./.
chr1	22033244	.	T	.	.	LowGQX	END=22033246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033247	.	G	.	.	LowGQX	END=22033248	GT	./.
chr1	22033249	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033250	.	C	.	.	LowGQX	END=22033251	GT	./.
chr1	22033252	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22033253	.	C	.	.	LowGQX	END=22033400	GT	./.
chr1	22041810	.	A	.	.	LowGQX	END=22041841	GT	./.
chr1	22041842	.	A	.	.	LowGQX	END=22041861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22041862	.	C	.	.	LowGQX	.	GT	./.
chr1	22041863	.	A	.	.	LowGQX	END=22041881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22041882	.	C	.	.	LowGQX	.	GT	./.
chr1	22041883	.	A	.	.	LowGQX	END=22041889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22041890	.	C	.	.	LowGQX	.	GT	./.
chr1	22041891	.	A	.	.	LowGQX	END=22041905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22041906	.	T	.	.	LowGQX	.	GT	./.
chr1	22041907	.	A	.	.	LowGQX	END=22041912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22041913	.	T	.	.	LowGQX	.	GT	./.
chr1	22041914	.	A	.	.	LowGQX	END=22041924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22041925	.	T	.	.	LowGQX	.	GT	./.
chr1	22041926	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22041927	.	C	.	.	LowGQX	.	GT	./.
chr1	22041928	.	T	.	.	LowGQX	END=22041933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22041934	.	T	.	.	LowGQX	.	GT	./.
chr1	22041935	.	T	.	.	LowGQX	END=22041941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22041942	.	T	.	.	LowGQX	.	GT	./.
chr1	22041943	.	T	.	.	LowGQX	END=22041947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22041948	.	C	.	.	LowGQX	.	GT	./.
chr1	22041949	.	A	.	.	LowGQX	END=22041951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22041952	.	T	.	.	LowGQX	.	GT	./.
chr1	22041953	.	A	.	.	LowGQX	END=22041966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22047527	.	A	.	.	LowGQX	END=22047619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22047620	.	A	.	.	LowGQX	.	GT	./.
chr1	22047621	.	C	.	.	LowGQX	END=22047661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22048141	.	A	.	.	LowGQX	END=22048259	GT	./.
chr1	22050389	.	A	.	.	LowGQX	END=22050655	GT	./.
chr1	22055054	.	C	.	.	LowGQX	END=22055214	GT	./.
chr1	22056195	.	A	.	.	LowGQX	END=22056244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22056245	.	A	.	.	LowGQX	END=22056327	GT	./.
chr1	22059126	.	A	.	.	LowGQX	END=22059143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22059144	.	A	.	.	LowGQX	.	GT	./.
chr1	22059145	.	C	.	.	LowGQX	END=22059225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22062912	.	A	.	.	LowGQX	END=22062972	GT	./.
chr1	22062973	.	C	.	.	LowGQX	END=22063054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22063055	.	C	.	.	LowGQX	.	GT	./.
chr1	22063056	.	C	.	.	LowGQX	END=22063120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22073552	.	A	.	.	LowGQX	END=22073555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22073556	.	T	.	.	LowGQX	END=22073651	GT	./.
chr1	22074629	.	A	.	.	LowGQX	END=22074766	GT	./.
chr1	22077998	.	A	.	.	LowGQX	END=22078000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22078001	.	T	.	.	LowGQX	.	GT	./.
chr1	22078002	.	T	.	.	LowGQX	END=22078010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22078011	.	C	.	.	LowGQX	.	GT	./.
chr1	22078012	.	C	.	.	LowGQX	END=22078013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22078014	.	A	.	.	LowGQX	.	GT	./.
chr1	22078015	.	G	.	.	LowGQX	END=22078028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22078029	.	A	.	.	LowGQX	.	GT	./.
chr1	22078030	.	C	.	.	LowGQX	END=22078050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22078051	.	T	.	.	LowGQX	.	GT	./.
chr1	22078052	.	A	.	.	LowGQX	END=22078056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22078057	.	C	.	.	LowGQX	.	GT	./.
chr1	22078058	.	A	.	.	LowGQX	END=22078076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22078077	.	A	.	.	LowGQX	END=22078078	GT	./.
chr1	22078079	.	A	.	.	LowGQX	END=22078081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22078082	.	T	.	.	LowGQX	.	GT	./.
chr1	22078083	.	T	.	.	LowGQX	END=22078099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22078100	.	T	.	.	LowGQX	END=22078110	GT	./.
chr1	22078968	.	G	.	.	LowGQX	END=22079146	GT	./.
chr1	22079443	.	T	.	.	LowGQX	END=22079614	GT	./.
chr1	22082967	.	C	.	.	LowGQX	END=22083056	GT	./.
chr1	22083057	.	C	.	.	LowGQX	END=22083070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22083071	.	T	.	.	LowGQX	.	GT	./.
chr1	22083072	.	A	.	.	LowGQX	END=22083146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22083147	.	T	.	.	LowGQX	.	GT	./.
chr1	22083148	.	G	.	.	LowGQX	END=22083168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22083169	.	A	.	.	LowGQX	.	GT	./.
chr1	22083170	.	A	.	.	LowGQX	END=22083203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22083204	.	A	.	.	LowGQX	END=22083205	GT	./.
chr1	22083206	.	A	.	.	LowGQX	END=22083207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22083208	.	A	.	.	LowGQX	END=22083225	GT	./.
chr1	22084154	.	A	.	.	LowGQX	END=22084278	GT	./.
chr1	22109315	.	A	.	.	LowGQX	END=22109452	GT	./.
chr1	22138938	.	A	.	.	LowGQX	END=22139037	GT	./.
chr1	22140889	.	A	.	.	LowGQX	END=22141207	GT	./.
chr1	22141208	.	A	.	.	LowGQX	END=22141263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22141264	.	A	.	.	LowGQX	.	GT	./.
chr1	22141265	.	G	.	.	LowGQX	END=22141318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22142434	.	A	.	.	LowGQX	END=22142569	GT	./.
chr1	22147941	.	A	.	.	LowGQX	END=22148106	GT	./.
chr1	22148652	.	T	.	.	LowGQX	END=22148751	GT	./.
chr1	22149758	.	C	.	.	PASS	END=22149771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	22149772	.	G	.	.	PASS	END=22149777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	22149778	.	G	.	.	PASS	END=22149780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	22149781	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:20:60
chr1	22149782	.	G	.	.	PASS	END=22149789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	22149790	.	G	.	.	PASS	END=22149793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	22149794	.	G	.	.	PASS	END=22149802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	22149803	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:66:60
chr1	22149804	.	G	.	.	PASS	END=22149809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	22149810	.	T	.	.	PASS	END=22149822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	22149823	.	G	.	.	PASS	END=22149833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	22149834	.	G	.	.	PASS	END=22149858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	22149859	.	G	.	.	PASS	END=22149886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	22149887	.	G	.	.	PASS	END=22149934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	22149935	.	T	C	3849.36	PASS	DP=143;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=15.2459;MQ=60;MQ0=0;QD=26.92;SB=-1983.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,142:143:99:3849,289,0:60:99:1.000
chr1	22149936	.	G	.	.	PASS	END=22149981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	22149982	.	C	.	.	PASS	END=22150031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	22150032	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:83:99:60
chr1	22150058	.	C	.	.	PASS	END=22150117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	22150118	.	C	T	889.39	PASS	BaseQRankSum=-0.054;DP=79;Dels=0.00;FS=0.889;HRun=0;HaplotypeScore=12.4682;MQ=60;MQ0=0;MQRankSum=-0.505;QD=11.26;ReadPosRankSum=0.348;SB=-442.83	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:39,40:79:99:919,0,1091:60:99:0.506
chr1	22150119	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:79:99:60
chr1	22150120	.	C	T	937.88	PASS	BaseQRankSum=-0.250;DP=77;Dels=0.00;FS=3.185;HRun=1;HaplotypeScore=11.5213;MQ=60;MQ0=0;MQRankSum=0.146;QD=12.18;ReadPosRankSum=-0.448;SB=-526.19	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:41,35:77:99:968,0,1117:60:99:0.461
chr1	22150121	.	T	.	.	PASS	END=22150159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	22150160	.	G	T	885.17	PASS	BaseQRankSum=3.043;DP=77;Dels=0.00;FS=1.972;HRun=0;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=0.445;QD=11.50;ReadPosRankSum=0.097;SB=-491.52	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,35:77:99:915,0,1146:60:99:0.455
chr1	22150161	.	G	.	.	PASS	END=22150206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	22150207	.	C	.	.	PASS	END=22150224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:77:60
chr1	22150225	.	T	.	.	PASS	END=22150242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	22150243	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:59:60
chr1	22150244	.	C	.	.	PASS	END=22150255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	22150256	.	T	.	.	PASS	END=22150263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	22150563	.	C	.	.	PASS	END=22150580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:60
chr1	22150581	.	G	.	.	PASS	END=22150609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	22150610	.	T	.	.	PASS	END=22150646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	22150647	.	T	.	.	PASS	END=22150738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	22150739	.	C	.	.	PASS	END=22150746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	22150747	.	T	.	282.78	PASS	DP=157;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:125:157:99:60:99
chr1	22150748	.	G	.	.	PASS	END=22150866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	22150867	.	C	.	.	PASS	END=22150919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	22150920	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:118:99:60
chr1	22150979	.	C	.	.	PASS	END=22151018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	22151019	.	C	.	.	PASS	END=22151125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	22151126	.	G	.	.	PASS	END=22151207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	22151208	.	G	.	.	PASS	END=22151264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	22151265	.	A	.	.	PASS	END=22151281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	22151282	.	A	.	.	PASS	END=22151304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	22151305	.	C	.	.	PASS	END=22151323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	22154305	.	G	.	.	PASS	END=22154368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	22154369	.	G	.	.	PASS	END=22154404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	22154405	.	T	.	.	PASS	END=22154463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	22154472	.	C	.	.	PASS	END=22154580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr1	22154581	.	G	.	.	PASS	END=22154614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	22154615	.	C	.	.	PASS	END=22154644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	22154645	.	C	.	.	PASS	END=22154659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	22154660	.	A	.	.	PASS	END=22154669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	22154670	.	G	.	.	PASS	END=22154683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	22154684	.	G	.	.	PASS	END=22154696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	22154697	.	C	T	1751.50	PASS	BaseQRankSum=1.181;DP=120;Dels=0.00;FS=3.596;HRun=1;HaplotypeScore=17.0445;MQ=60;MQ0=0;MQRankSum=-1.621;QD=14.60;ReadPosRankSum=1.015;SB=-978.35	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:52,67:120:99:1781,0,1474:60:99:0.563
chr1	22154698	.	G	.	.	PASS	END=22154844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	22154845	.	A	G	4292.43	PASS	BaseQRankSum=-0.763;DP=137;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.7343;MQ=60;MQ0=0;MQRankSum=-1.355;QD=31.33;ReadPosRankSum=-1.391;SB=-2202.82	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,135:137:99:4292,261,0:60:99:0.985
chr1	22154846	.	T	.	.	PASS	END=22154870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	22154871	.	T	.	.	PASS	END=22154930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	22154931	.	G	.	.	PASS	END=22154970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	22155277	.	C	.	.	PASS	END=22155287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	22155288	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:34:60
chr1	22155289	.	C	.	.	PASS	END=22155308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	22155309	.	C	.	.	PASS	END=22155310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:63:60
chr1	22155311	.	G	.	.	PASS	END=22155329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	22155330	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:67:60
chr1	22155331	.	G	.	.	PASS	END=22155367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:84:60
chr1	22155368	.	G	.	.	PASS	END=22155403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	22155404	.	A	.	.	PASS	END=22155451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	22155452	.	G	.	.	PASS	END=22155540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	22155541	.	C	.	.	PASS	END=22155564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	22155565	.	G	.	.	PASS	END=22155600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	22155601	.	A	.	.	PASS	END=22155610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	22155611	.	A	.	.	PASS	END=22155623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	22155825	.	G	.	.	PASS	END=22155840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	22155841	.	T	C	454.78	PASS	BaseQRankSum=-1.767;DP=30;Dels=0.00;FS=2.218;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=-0.062;QD=15.16;ReadPosRankSum=1.684;SB=-102.73	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:14,16:30:99:485,0,393:60:99:0.533
chr1	22155842	.	G	.	.	PASS	END=22155849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	22155850	.	C	.	.	PASS	END=22155852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	22155853	.	C	T	497.63	PASS	BaseQRankSum=0.853;DP=32;Dels=0.00;FS=2.207;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=-0.020;QD=15.55;ReadPosRankSum=1.012;SB=-94.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:14,17:32:99:528,0,412:60:99:0.548
chr1	22155854	.	G	.	.	PASS	END=22155873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	22155874	.	A	.	.	PASS	END=22155903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	22155904	.	G	.	.	PASS	END=22155938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:96:60
chr1	22155939	.	C	.	.	PASS	END=22156026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	22156027	.	T	.	.	PASS	END=22156055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	22156056	.	A	.	.	PASS	END=22156064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	22156065	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:63:60
chr1	22156066	.	A	.	.	PASS	END=22156074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	22156075	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:68:60
chr1	22156076	.	G	.	.	PASS	END=22156091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	22156092	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:75:60
chr1	22156093	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:51:60
chr1	22156094	.	A	.	.	PASS	END=22156113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	22156114	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:57:60
chr1	22156115	.	C	.	.	PASS	END=22156126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	22156127	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:48:60
chr1	22156128	.	G	.	.	PASS	END=22156131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	22156132	.	A	.	.	PASS	END=22156133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	22156134	.	C	.	.	PASS	END=22156139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	22156140	.	C	.	.	PASS	END=22156148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	22156435	.	C	.	.	PASS	END=22156445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	22156446	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:69:60
chr1	22156447	.	C	.	.	PASS	END=22156495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr1	22156496	.	C	.	.	PASS	END=22156566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	22156567	.	C	.	.	PASS	END=22156592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	22156593	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:54:60
chr1	22156594	.	A	.	.	PASS	END=22156602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	22156603	.	A	.	.	PASS	END=22156609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	22156610	.	A	.	.	PASS	END=22156615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	22156616	.	G	.	.	PASS	END=22156620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	22156621	.	T	.	.	PASS	END=22156631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	22156632	.	G	.	.	PASS	END=22156633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	22156634	.	A	.	.	PASS	END=22156635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr1	22157424	.	A	.	.	PASS	END=22157466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	22157467	.	G	.	.	PASS	END=22157592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr1	22157593	.	A	.	.	PASS	END=22157634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	22157657	.	G	.	.	PASS	END=22157688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	22157689	.	G	A	4641.28	PASS	DP=156;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=22.8292;MQ=60;MQ0=0;QD=29.75;SB=-2023.18	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,155:156:99:4641,358,0:60:99:1.000
chr1	22157690	.	T	.	.	PASS	END=22157739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	22157740	.	G	.	.	PASS	END=22157823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	22157824	.	G	.	.	PASS	END=22157855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	22157856	.	G	.	.	PASS	END=22157868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	22157905	.	C	.	.	PASS	END=22157969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	22157970	.	C	.	.	PASS	END=22157984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	22157985	.	G	.	.	PASS	END=22158119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	22158120	.	G	T	1919.85	PASS	BaseQRankSum=-0.584;DP=157;Dels=0.00;FS=4.137;HRun=1;HaplotypeScore=18.0862;MQ=60;MQ0=0;MQRankSum=-0.972;QD=12.23;ReadPosRankSum=-0.046;SB=-1004.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:71,85:157:99:1950,0,1809:60:99:0.545
chr1	22158121	.	T	.	.	PASS	END=22158150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	22158151	.	G	.	.	PASS	END=22158251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	22158252	.	G	.	.	PASS	END=22158289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	22158290	.	C	.	.	PASS	END=22158318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	22158319	.	A	.	.	PASS	END=22158333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	22158334	.	T	.	.	PASS	END=22158337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:60
chr1	22158338	.	T	.	.	PASS	END=22158340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	22158937	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr1	22158938	.	C	.	.	PASS	END=22158965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	22158966	.	G	.	.	PASS	END=22159002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	22159003	.	C	.	.	PASS	END=22159007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	22159008	.	C	A	921.02	PASS	BaseQRankSum=1.044;DP=83;Dels=0.00;FS=7.928;HRun=1;HaplotypeScore=10.4161;MQ=60;MQ0=0;MQRankSum=1.221;QD=11.10;ReadPosRankSum=-0.829;SB=-429.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:37,45:83:99:951,0,911:60:99:0.549
chr1	22159009	.	A	.	.	PASS	END=22159073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	22159074	.	C	.	.	PASS	END=22159097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	22159098	.	C	.	.	PASS	END=22159122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	22159123	.	G	.	.	PASS	END=22159125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	22159126	.	C	.	.	PASS	END=22159136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	22159137	.	C	.	.	PASS	END=22159150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	22159710	.	A	.	.	PASS	END=22159724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	22159725	.	G	.	.	PASS	END=22159759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	22159760	.	C	.	.	PASS	END=22159814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	22159815	.	C	.	.	PASS	END=22159861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:298:99:60
chr1	22159862	.	T	.	.	PASS	END=22159916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:376:99:60
chr1	22159917	.	G	.	.	PASS	END=22160064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:405:99:60
chr1	22160065	.	T	.	.	PASS	END=22160110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:364:99:60
chr1	22160111	.	C	T	4533.64	PASS	BaseQRankSum=1.901;DP=372;Dels=0.00;FS=0.934;HRun=0;HaplotypeScore=29.4072;MQ=60;MQ0=0;MQRankSum=0.195;QD=12.19;ReadPosRankSum=0.683;SB=-1383.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:197,174:372:99:4534,0,5391:60:99:0.469
chr1	22160112	.	A	.	.	PASS	END=22160144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:287:99:60
chr1	22160145	.	C	.	.	PASS	END=22160158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:260:99:60
chr1	22160258	.	T	.	.	PASS	END=22160352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	22160353	.	A	.	.	PASS	END=22160408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	22160409	.	T	.	.	PASS	END=22160426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	22160427	.	C	.	.	PASS	END=22160444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:92:60
chr1	22160445	.	C	.	.	PASS	END=22160459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	22160460	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:60
chr1	22160461	.	A	.	.	PASS	END=22160469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	22161121	.	A	.	.	PASS	END=22161134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	22161135	.	T	.	.	PASS	END=22161163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	22161164	.	G	.	.	PASS	END=22161193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	22161194	.	G	.	.	PASS	END=22161216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	22161217	.	T	.	.	PASS	END=22161257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr1	22161258	.	A	.	.	PASS	END=22161274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:314:99:60
chr1	22161275	.	G	A	3078.85	PASS	BaseQRankSum=2.373;DP=318;Dels=0.00;FS=4.676;HRun=1;HaplotypeScore=42.0201;MQ=60;MQ0=0;MQRankSum=-0.543;QD=9.68;ReadPosRankSum=-1.214;SB=-1804.99	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:176,139:318:99:3109,0,4440:60:99:0.441
chr1	22161276	.	A	.	.	PASS	END=22161394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:292:99:60
chr1	22161395	.	G	.	.	PASS	END=22161408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	22161409	.	T	.	.	PASS	END=22161433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	22161434	.	C	.	.	PASS	END=22161455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	22161456	.	A	.	.	PASS	END=22161486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	22161487	.	T	.	.	PASS	END=22161505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	22161506	.	G	.	.	PASS	END=22161508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	22161509	.	T	.	.	PASS	END=22161522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	22161523	.	T	.	.	PASS	END=22161545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	22161546	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:99:60
chr1	22161547	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:54:60
chr1	22161982	.	T	.	.	PASS	END=22162010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	22162011	.	A	.	.	PASS	END=22162042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	22162043	.	C	.	.	PASS	END=22162056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	22162057	.	C	.	.	PASS	END=22162086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	22162087	.	G	.	.	PASS	END=22162176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	22162177	.	T	.	.	PASS	END=22162181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	22163244	.	G	.	.	PASS	END=22163266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	22163267	.	G	.	.	PASS	END=22163300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	22163301	.	A	.	.	PASS	END=22163315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	22163316	.	C	.	.	PASS	END=22163401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	22163402	.	G	A	1942.42	PASS	BaseQRankSum=-1.871;DP=202;Dels=0.00;FS=1.200;HRun=0;HaplotypeScore=22.9039;MQ=60;MQ0=0;MQRankSum=-0.622;QD=9.62;ReadPosRankSum=-1.085;SB=-938.51	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:100,101:202:99:1972,0,2413:60:99:0.502
chr1	22163403	.	C	.	.	PASS	END=22163456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	22163457	.	G	.	.	PASS	END=22163470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	22163471	.	G	.	.	PASS	END=22163505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	22163506	.	G	.	.	PASS	END=22163520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	22163521	.	T	.	.	PASS	END=22163536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	22163537	.	T	.	.	PASS	END=22163540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	22163541	.	T	.	.	PASS	END=22163542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	22163543	.	A	.	.	PASS	END=22163545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	22163546	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:66:60
chr1	22163547	.	C	.	.	PASS	END=22163550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:93:60
chr1	22165267	.	A	.	.	PASS	END=22165292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	22165293	.	T	.	.	PASS	END=22165309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	22165310	.	C	.	.	PASS	END=22165340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	22165341	.	G	.	.	PASS	END=22165385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	22165386	.	C	.	.	PASS	END=22165415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	22165416	.	T	.	.	PASS	END=22165536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	22165537	.	G	.	.	PASS	END=22165558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	22165559	.	C	.	.	PASS	END=22165579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	22165580	.	T	.	.	PASS	END=22165611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	22165612	.	A	.	.	PASS	END=22165629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	22165813	.	G	.	.	PASS	END=22165841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	22165842	.	C	.	.	PASS	END=22165869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	22165870	.	C	.	.	PASS	END=22165900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	22165901	.	A	G	1340.60	PASS	BaseQRankSum=1.461;DP=87;Dels=0.00;FS=1.928;HRun=1;HaplotypeScore=10.5193;MQ=60;MQ0=0;MQRankSum=-0.564;QD=15.41;ReadPosRankSum=1.116;SB=-589.79	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:36,51:87:99:1371,0,817:60:99:0.586
chr1	22165902	.	G	.	.	PASS	END=22165924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	22165925	.	G	.	.	PASS	END=22165986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	22165987	.	G	A	1799.07	PASS	BaseQRankSum=0.819;DP=125;Dels=0.00;FS=4.415;HRun=0;HaplotypeScore=24.8724;MQ=60;MQ0=0;MQRankSum=1.217;QD=14.39;ReadPosRankSum=-0.174;SB=-1038.34	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:50,75:125:99:1829,0,1187:60:99:0.600
chr1	22165988	.	C	.	.	PASS	END=22166028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	22166029	.	T	.	.	PASS	END=22166062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	22166063	.	A	.	.	PASS	END=22166087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	22166088	.	A	.	.	PASS	END=22166094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	22166264	.	C	.	.	PASS	END=22166279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	22166280	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:71:60
chr1	22166281	.	C	.	.	PASS	END=22166301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr1	22166302	.	C	.	.	PASS	END=22166316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	22166317	.	G	.	.	PASS	END=22166330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	22166331	.	C	.	.	PASS	END=22166404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	22166405	.	T	.	.	PASS	END=22166479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	22166480	.	T	.	.	PASS	END=22166561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	22167543	.	G	.	.	PASS	END=22167593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	22167594	.	C	.	.	PASS	END=22167829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr1	22167981	.	G	.	.	PASS	END=22167987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	22167988	.	G	T	1397.75	PASS	BaseQRankSum=0.018;DP=132;Dels=0.00;FS=11.420;HRun=0;HaplotypeScore=10.4586;MQ=60;MQ0=0;MQRankSum=-0.542;QD=10.59;ReadPosRankSum=1.226;SB=-501.75	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:69,63:132:99:1428,0,2016:60:99:0.477
chr1	22167989	.	G	.	.	PASS	END=22168054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	22168055	.	C	.	.	PASS	END=22168098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	22168099	.	A	.	.	PASS	END=22168133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	22168134	.	T	.	.	PASS	END=22168163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	22168164	.	T	.	.	PASS	END=22168195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	22168196	.	A	.	.	PASS	END=22168210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	22168211	.	C	.	.	PASS	END=22168215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	22168216	.	C	T	459.16	PASS	BaseQRankSum=0.875;DP=35;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=5.6815;MQ=60;MQ0=0;MQRankSum=-0.809;QD=13.12;ReadPosRankSum=0.182;SB=-130.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:18,17:35:99:489,0,503:60:99:0.486
chr1	22168217	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:93:60
chr1	22168444	.	C	.	.	PASS	END=22168453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	22168454	.	C	.	.	PASS	END=22168507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	22168508	.	G	.	.	PASS	END=22168670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	22168671	.	G	.	.	PASS	END=22168825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	22168826	.	T	.	.	PASS	END=22168854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	22168855	.	G	A	1606.99	PASS	BaseQRankSum=2.690;DP=149;Dels=0.00;FS=0.683;HRun=0;HaplotypeScore=17.0973;MQ=60;MQ0=0;MQRankSum=-1.235;QD=10.79;ReadPosRankSum=1.331;SB=-610.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:78,70:149:99:1637,0,2043:60:99:0.473
chr1	22168856	.	C	.	.	PASS	END=22168883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	22168884	.	A	.	.	PASS	END=22168924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	22169212	.	G	.	.	PASS	END=22169220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	22169221	.	A	.	.	PASS	END=22169246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	22169247	.	A	.	.	PASS	END=22169290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	22169291	.	C	.	.	PASS	END=22169397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	22169398	.	C	.	.	PASS	END=22169427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	22169428	.	G	.	.	PASS	END=22169441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	22169442	.	G	.	.	PASS	END=22169465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	22169739	.	A	.	.	PASS	END=22169743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:59
chr1	22169744	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:61:60
chr1	22169745	.	C	.	.	PASS	END=22169767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	22169768	.	C	.	.	PASS	END=22169781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	22169782	.	T	.	.	PASS	END=22169803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	22169804	.	G	.	.	PASS	END=22169924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	22169925	.	C	.	.	PASS	END=22169942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	22169943	.	G	.	.	PASS	END=22169963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	22169964	.	A	.	.	PASS	END=22169979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:95:60
chr1	22169980	.	A	.	.	PASS	END=22169982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	22170590	.	A	.	.	PASS	END=22170603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	22170604	.	T	.	.	PASS	END=22170643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	22170644	.	G	.	.	PASS	END=22170684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	22170685	.	C	.	.	PASS	END=22170758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	22170759	.	G	.	.	PASS	END=22170787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr1	22170788	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:69:60
chr1	22170789	.	G	.	.	PASS	END=22170793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	22170794	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:48:60
chr1	22170795	.	G	.	.	PASS	END=22170811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	22170812	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:57:60
chr1	22170813	.	C	.	.	PASS	END=22170820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	22170821	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:57:60
chr1	22170822	.	G	.	.	PASS	END=22170825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	22170826	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:54:60
chr1	22170827	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:75:60
chr1	22170828	.	C	G	300.74	PASS	BaseQRankSum=0.000;DP=28;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.8930;MQ=60;MQ0=0;MQRankSum=-0.461;QD=10.74;ReadPosRankSum=-0.737;SB=-92.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:15,13:28:99:331,0,374:60:99:0.464
chr1	22170829	.	C	.	.	PASS	END=22170832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	22170833	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:30:60
chr1	22170834	.	T	.	.	PASS	END=22170841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	22170842	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:42:60
chr1	22170843	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:63:60
chr1	22172550	.	T	.	.	PASS	END=22172574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	22172575	.	T	.	.	PASS	END=22172604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	22172605	.	G	.	.	PASS	END=22172629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	22172630	.	G	.	.	PASS	END=22172759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr1	22172760	.	A	.	.	PASS	END=22172779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	22172780	.	C	.	.	PASS	END=22172799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	22172890	.	C	.	.	PASS	END=22172963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:96:60
chr1	22172964	.	C	.	.	PASS	END=22173024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	22173025	.	C	.	.	PASS	END=22173058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	22173059	.	G	.	.	PASS	END=22173068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	22173069	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:60:60
chr1	22173070	.	G	.	.	PASS	END=22173093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	22173094	.	T	.	.	PASS	END=22173115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	22173116	.	T	.	.	PASS	END=22173125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	22173126	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:39:60
chr1	22173127	.	G	.	.	PASS	END=22173143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	22173796	.	C	.	.	PASS	END=22173804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	22173805	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:72:60
chr1	22173806	.	C	.	.	PASS	END=22173829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	22173830	.	T	.	.	PASS	END=22173869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:87:60
chr1	22173870	.	G	.	.	PASS	END=22173922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	22173923	.	G	.	.	PASS	END=22173991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	22173992	.	G	.	.	PASS	END=22174030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	22174031	.	G	.	.	PASS	END=22174036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	22174131	.	C	.	.	PASS	END=22174167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:83:60
chr1	22174168	.	G	.	.	PASS	END=22174204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	22174205	.	C	.	.	PASS	END=22174209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	22174210	.	C	.	.	PASS	END=22174251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	22174252	.	A	.	.	PASS	END=22174379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	22174380	.	T	C	1876.75	PASS	BaseQRankSum=0.989;DP=166;Dels=0.00;FS=6.503;HRun=0;HaplotypeScore=14.3088;MQ=60;MQ0=0;MQRankSum=0.504;QD=11.31;ReadPosRankSum=1.340;SB=-851.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:92,73:166:99:1907,0,2391:60:99:0.442
chr1	22174381	.	G	.	.	PASS	END=22174399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	22174400	.	C	.	.	PASS	END=22174425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	22174426	.	T	G	7191.89	PASS	BaseQRankSum=-0.502;DP=246;Dels=0.00;FS=4.253;HRun=1;HaplotypeScore=21.0324;MQ=60;MQ0=0;MQRankSum=-0.785;QD=29.24;ReadPosRankSum=0.940;SB=-3000.36	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,244:246:99:7192,514,0:60:99:0.996
chr1	22174427	.	A	.	.	PASS	END=22174473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr1	22174474	.	A	.	.	PASS	END=22174588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:273:99:60
chr1	22174589	.	G	.	.	PASS	END=22174599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:60
chr1	22174600	.	A	G	7547.50	PASS	DP=257;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=19.8853;MQ=60;MQ0=0;QD=29.37;SB=-2428.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,254:257:99:7547,575,0:60:99:1.000
chr1	22174601	.	T	.	.	PASS	END=22174629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	22174630	.	A	.	.	PASS	END=22174637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	22175085	.	T	.	.	PASS	END=22175127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:93:60
chr1	22175128	.	C	.	.	PASS	END=22175182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	22175183	.	T	.	.	PASS	END=22175277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	22175278	.	A	.	.	PASS	END=22175379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	22175380	.	A	.	.	PASS	END=22175473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	22175474	.	C	.	.	PASS	END=22175511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:90:60
chr1	22175512	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:99:60
chr1	22175513	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:76:60
chr1	22175514	.	G	.	.	PASS	END=22175530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	22175531	.	G	.	.	PASS	END=22175533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	22175534	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:66:60
chr1	22175535	.	C	.	.	PASS	END=22175553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	22175554	.	T	.	.	PASS	END=22175555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	22175556	.	A	.	.	PASS	END=22175560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	22175561	.	T	.	.	PASS	END=22175567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	22175568	.	T	.	.	PASS	END=22175573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	22175574	.	T	.	.	PASS	END=22175575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	22176483	.	T	.	.	PASS	END=22176493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	22176494	.	C	.	.	PASS	END=22176499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	22176500	.	G	T	1241.56	PASS	BaseQRankSum=2.154;DP=82;Dels=0.00;FS=3.005;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-0.752;QD=15.14;ReadPosRankSum=-0.229;SB=-127.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:36,46:82:99:1272,0,954:60:99:0.561
chr1	22176501	.	G	.	.	PASS	END=22176522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	22176523	.	C	.	.	PASS	END=22176575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	22176576	.	G	.	.	PASS	END=22176666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	22176667	.	G	.	.	PASS	END=22176736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	22176805	.	G	.	.	PASS	END=22176830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	22176831	.	C	T	1818.64	PASS	BaseQRankSum=-1.279;DP=123;Dels=0.00;FS=17.479;HRun=0;HaplotypeScore=20.9900;MQ=60;MQ0=0;MQRankSum=0.159;QD=14.79;ReadPosRankSum=0.265;SB=-859.70	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:45,77:123:99:1849,0,1374:60:99:0.631
chr1	22176832	.	C	.	.	PASS	END=22176940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	22176941	.	G	.	.	PASS	END=22176971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	22176972	.	C	.	.	PASS	END=22176991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	22176992	.	C	.	.	PASS	END=22177007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	22177008	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:75:60
chr1	22177009	.	G	.	.	PASS	END=22177019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	22177020	.	A	.	.	PASS	END=22177021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	22177022	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:56:60
chr1	22177023	.	C	.	.	PASS	END=22177030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	22177031	.	G	.	.	PASS	END=22177042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	22177988	.	A	.	.	PASS	END=22178013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	22178014	.	G	.	.	PASS	END=22178029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	22178030	.	G	.	.	PASS	END=22178074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	22178075	.	C	.	.	PASS	END=22178108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr1	22178109	.	A	.	.	PASS	END=22178222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:252:99:60
chr1	22178223	.	T	.	.	PASS	END=22178395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:322:99:60
chr1	22178396	.	G	.	.	PASS	END=22178435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:246:99:60
chr1	22178436	.	A	.	.	PASS	END=22178470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	22178530	.	T	.	.	PASS	END=22178643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	22178644	.	T	.	.	PASS	END=22178693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	22178694	.	A	.	.	PASS	END=22178713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	22178714	.	G	.	.	PASS	END=22178735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	22178736	.	T	.	.	PASS	END=22178759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	22178760	.	A	.	.	PASS	END=22178777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	22179142	.	C	.	.	PASS	END=22179177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	22179178	.	C	.	.	PASS	END=22179326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	22179327	.	T	.	.	PASS	END=22179354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	22179355	.	G	.	.	PASS	END=22179404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	22179405	.	G	.	.	PASS	END=22179504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	22179505	.	C	.	.	PASS	END=22179534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	22179535	.	G	.	.	PASS	END=22179553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	22179554	.	C	.	.	PASS	END=22179576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	22179577	.	G	.	.	PASS	END=22179596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	22179597	.	T	.	.	PASS	END=22179614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	22180065	.	T	.	.	LowGQX	END=22180067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22180068	.	C	.	.	LowGQX	.	GT	./.
chr1	22180069	.	T	.	.	LowGQX	END=22180090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22180091	.	T	.	.	LowGQX	.	GT	./.
chr1	22180092	.	A	.	.	LowGQX	END=22180151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22180152	.	A	.	.	LowGQX	.	GT	./.
chr1	22180153	.	T	.	.	LowGQX	END=22180164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22180275	.	A	.	.	LowGQX	END=22180374	GT	./.
chr1	22180635	.	C	.	.	PASS	END=22180642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	22180643	.	C	.	.	PASS	END=22180655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	22180656	.	G	.	.	PASS	END=22180667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	22180668	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:63:60
chr1	22180669	.	C	.	.	PASS	END=22180683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	22180684	.	A	.	.	PASS	END=22180685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:72:60
chr1	22180686	.	C	.	.	PASS	END=22180700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	22180701	.	G	.	.	PASS	END=22180727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	22180728	.	A	.	.	PASS	END=22180745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	22180746	.	C	.	.	PASS	END=22180829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	22180830	.	C	.	.	PASS	END=22180858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	22180859	.	T	.	.	PASS	END=22180881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	22180882	.	T	.	.	PASS	END=22180887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	22181053	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:54:60
chr1	22181054	.	C	.	.	PASS	END=22181067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	22181068	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:69:60
chr1	22181069	.	C	.	.	PASS	END=22181095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	22181096	.	C	.	.	PASS	END=22181125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	22181126	.	C	.	.	PASS	END=22181146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	22181147	.	A	.	.	PASS	END=22181167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	22181168	.	G	.	.	PASS	END=22181303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	22181304	.	T	.	.	PASS	END=22181365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	22181366	.	G	.	.	PASS	END=22181436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	22181437	.	G	.	.	PASS	END=22181467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	22181468	.	T	.	.	PASS	END=22181512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	22181513	.	A	.	.	PASS	END=22181527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	22181746	.	T	.	.	PASS	END=22181757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	22181758	.	C	.	.	PASS	END=22181787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr1	22181788	.	T	.	.	PASS	END=22181904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:261:99:60
chr1	22181905	.	C	.	.	PASS	END=22181930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	22181931	.	C	.	.	PASS	END=22181974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	22181975	.	T	.	.	PASS	END=22182010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	22182011	.	C	.	.	PASS	END=22182073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	22182074	.	C	.	.	PASS	END=22182174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	22182175	.	A	.	.	PASS	END=22182219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	22182229	.	C	.	.	PASS	END=22182296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	22182297	.	G	.	.	PASS	END=22182363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	22182364	.	G	.	.	PASS	END=22182402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	22182403	.	A	.	.	PASS	END=22182435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	22182436	.	A	.	.	PASS	END=22182446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	22182447	.	T	.	.	PASS	END=22182448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	22182449	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:63:60
chr1	22182450	.	C	.	.	PASS	END=22182453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	22182454	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:63:60
chr1	22182455	.	G	.	.	PASS	END=22182456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	22183457	.	G	.	.	PASS	END=22183469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	22183470	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:63:60
chr1	22183471	.	A	C	654.75	PASS	BaseQRankSum=1.261;DP=22;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=0.158;QD=29.76;ReadPosRankSum=-1.103;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,21:22:57.16:688,57,0:60:57:0.955
chr1	22183472	.	C	.	.	PASS	END=22183473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	22183474	.	G	.	.	PASS	END=22183480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	22183481	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:48:60
chr1	22183482	.	G	.	.	PASS	END=22183483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	22183484	.	A	.	.	PASS	END=22183485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	22183486	.	C	.	.	PASS	END=22183488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	22183489	.	G	.	.	PASS	END=22183498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	22183499	.	G	.	.	PASS	END=22183501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	22183502	.	G	.	.	PASS	END=22183513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	22183514	.	C	.	.	PASS	END=22183530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	22183531	.	C	.	.	PASS	END=22183556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	22183557	.	G	.	.	PASS	END=22183579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	22183580	.	C	.	.	PASS	END=22183760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	22183761	.	C	.	.	PASS	END=22183801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	22183802	.	G	.	.	PASS	END=22183887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	22183888	.	C	.	.	PASS	END=22183919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	22183920	.	G	.	.	PASS	END=22183929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	22186008	.	C	.	.	PASS	END=22186014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	22186015	.	G	.	.	PASS	END=22186043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	22186044	.	G	.	.	PASS	END=22186056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	22186057	.	A	.	.	PASS	END=22186084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	22186085	.	G	.	.	PASS	END=22186195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	22186196	.	T	.	.	PASS	END=22186220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	22186277	.	C	.	.	PASS	END=22186309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	22186310	.	G	.	.	PASS	END=22186408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	22186409	.	T	.	.	PASS	END=22186459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	22186460	.	C	.	.	PASS	END=22186528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	22186529	.	C	.	.	PASS	END=22186546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	22186619	.	G	.	.	PASS	END=22186717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	22186718	.	C	.	.	PASS	END=22186737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	22186738	.	G	.	.	PASS	END=22186779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	22188199	.	G	.	.	PASS	END=22188225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	22188226	.	C	.	.	PASS	END=22188257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	22188258	.	G	.	.	PASS	END=22188387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	22188430	.	A	.	.	PASS	END=22188468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	22188469	.	T	.	.	PASS	END=22188532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	22188533	.	T	.	.	PASS	END=22188565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	22188566	.	C	.	.	PASS	END=22188605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	22188606	.	T	.	.	PASS	END=22188624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	22188625	.	G	.	.	PASS	END=22188639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	22188640	.	A	.	.	PASS	END=22188644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	22188645	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:33:60
chr1	22188646	.	C	.	.	PASS	END=22188655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	22188656	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:30:60
chr1	22188657	.	A	.	.	PASS	END=22188659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	22190542	.	A	.	.	PASS	END=22190561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	22190562	.	A	.	.	PASS	END=22190593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	22190594	.	G	.	.	PASS	END=22190640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	22190641	.	T	.	.	PASS	END=22190712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	22190713	.	G	.	.	PASS	END=22190755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	22190756	.	C	.	.	PASS	END=22190757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	22191285	.	G	.	.	PASS	END=22191288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	22191289	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	22191290	.	T	.	.	PASS	END=22191292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	22191293	.	C	.	.	PASS	END=22191305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	22191306	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:33:60
chr1	22191307	.	A	.	.	PASS	END=22191316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	22191317	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:51:60
chr1	22191318	.	A	.	.	PASS	END=22191319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	22191320	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:45:60
chr1	22191321	.	T	.	.	PASS	END=22191325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	22191326	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:72:60
chr1	22191327	.	C	.	.	PASS	END=22191352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:77:60
chr1	22191353	.	T	.	.	PASS	END=22191374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	22191375	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:57:60
chr1	22191376	.	T	.	.	PASS	END=22191401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	22191402	.	G	.	.	PASS	END=22191435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	22191436	.	A	.	.	PASS	END=22191453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	22191454	.	G	A	996.86	PASS	BaseQRankSum=-0.515;DP=100;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=9.4692;MQ=60;MQ0=0;MQRankSum=-1.041;QD=9.97;ReadPosRankSum=0.494;SB=-576.17	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:48,50:100:99:1027,0,1191:60:99:0.510
chr1	22191455	.	C	.	.	PASS	END=22191522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	22191523	.	T	.	.	PASS	END=22191537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	22191538	.	G	.	.	PASS	END=22191555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:87:60
chr1	22191556	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:41:60
chr1	22191557	.	G	.	.	PASS	END=22191561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:90:60
chr1	22191562	.	A	.	.	PASS	END=22191563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:74:60
chr1	22191564	.	T	.	.	PASS	END=22191571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:81:60
chr1	22191572	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:72:60
chr1	22191573	.	T	.	111.24	PASS	DP=56;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:43:56:81.25:60:81
chr1	22191574	.	G	.	.	PASS	END=22191578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	22191579	.	T	G	35.10	LowQD;SB	BaseQRankSum=-1.964;DP=49;Dels=0.00;FS=32.048;HRun=5;HaplotypeScore=62.8513;MQ=60;MQ0=0;MQRankSum=-0.809;QD=0.72;ReadPosRankSum=0.725;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:32,17:49:65.10:65,0,576:60:35:0.347
chr1	22191580	.	G	.	.	PASS	END=22191583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:81:60
chr1	22191584	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:42:60
chr1	22191585	.	C	.	84.16	PASS	DP=50;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:37:50:54.17:60:54
chr1	22191586	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:99:60
chr1	22191587	.	T	G	47.67	LowQD;SB	BaseQRankSum=-2.499;DP=50;Dels=0.00;FS=21.256;HRun=3;HaplotypeScore=48.5468;MQ=60;MQ0=0;MQRankSum=-0.143;QD=0.95;ReadPosRankSum=1.270;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,17:50:77.66:78,0,554:60:48:0.340
chr1	22191588	.	G	.	.	PASS	END=22191590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	22191591	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:60:60
chr1	22191592	.	G	.	.	PASS	END=22191617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	22191727	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:66:60
chr1	22191728	.	G	.	.	PASS	END=22191733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	22191734	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:75:60
chr1	22191735	.	G	.	.	PASS	END=22191746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	22191747	.	G	.	.	PASS	END=22191783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	22191784	.	G	.	.	PASS	END=22191806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	22191807	.	T	.	.	PASS	END=22191909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	22192159	.	T	.	.	PASS	END=22192194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	22192195	.	T	.	.	PASS	END=22192237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	22192238	.	G	.	.	PASS	END=22192267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	22192268	.	A	.	.	PASS	END=22192326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:93:60
chr1	22192327	.	C	.	.	PASS	END=22192344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr1	22192345	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:75:60
chr1	22192346	.	G	.	.	PASS	END=22192353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	22198628	.	G	.	.	PASS	END=22198654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	22198655	.	C	.	.	PASS	END=22198693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	22198694	.	T	.	.	PASS	END=22198781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	22198782	.	A	.	.	PASS	END=22198826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	22198827	.	A	.	.	PASS	END=22198844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	22198845	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:63:60
chr1	22198846	.	C	.	.	PASS	END=22198849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	22198850	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:66:60
chr1	22198851	.	G	.	.	PASS	END=22198857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	22198858	.	A	.	.	PASS	END=22198859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	22198860	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:54:60
chr1	22198861	.	G	.	.	PASS	END=22198863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	22198864	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:45:60
chr1	22198865	.	G	.	.	PASS	END=22198867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	22198868	.	G	.	.	PASS	END=22198869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	22198870	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:48:60
chr1	22198871	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:63:60
chr1	22198872	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:48:60
chr1	22198873	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:66:60
chr1	22198874	.	G	.	.	PASS	END=22198875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	22198876	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:60
chr1	22198877	.	G	.	.	PASS	END=22198879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	22198880	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:60
chr1	22198881	.	A	.	.	PASS	END=22198884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	22198885	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:27:60
chr1	22198886	.	G	.	.	PASS	END=22198887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	22198888	.	A	.	57.07	LowGQX	DP=21;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:16:21:27.08:60:27
chr1	22198889	.	G	.	.	PASS	END=22198892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	22198893	.	G	.	.	PASS	END=22198894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	22198895	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:57:60
chr1	22198896	.	T	.	54.06	LowGQX	DP=21;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:13:21:24.07:60:24
chr1	22198897	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:60:60
chr1	22198898	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:33:60
chr1	22198899	.	G	.	.	PASS	END=22198900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	22198901	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:39:60
chr1	22198902	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:27:60
chr1	22198903	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:51:60
chr1	22198904	.	A	.	.	PASS	END=22198905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	22198906	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:57:60
chr1	22198907	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:42:60
chr1	22198908	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:60:60
chr1	22198909	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr1	22198910	.	G	.	.	PASS	END=22198913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	22198914	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:27:60
chr1	22198915	.	G	.	.	PASS	END=22198916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	22198917	.	C	.	.	PASS	END=22198919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	22198920	.	G	.	.	PASS	END=22198921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:66:60
chr1	22199062	.	A	.	.	PASS	END=22199080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:97:60
chr1	22199081	.	A	T	1843.26	PASS	BaseQRankSum=1.509;DP=62;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.5754;MQ=60;MQ0=0;MQRankSum=-0.224;QD=29.73;ReadPosRankSum=0.559;SB=-866.13	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,61:62:99:1876,141,0:60:99:0.984
chr1	22199082	.	C	.	.	PASS	END=22199142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	22199143	.	C	.	.	PASS	END=22199209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	22199210	.	T	.	.	PASS	END=22199244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	22199245	.	C	T	898.25	PASS	BaseQRankSum=1.419;DP=73;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.4583;MQ=60;MQ0=0;MQRankSum=0.171;QD=12.30;ReadPosRankSum=-0.524;SB=-504.49	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,35:73:99:928,0,955:60:99:0.479
chr1	22199246	.	A	.	.	PASS	END=22199278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	22199279	.	G	.	.	PASS	END=22199280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	22199281	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:60:60
chr1	22199282	.	A	.	.	PASS	END=22199304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	22199352	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:99:60
chr1	22199353	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:75:60
chr1	22199354	.	G	.	.	PASS	END=22199370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	22199371	.	C	.	.	PASS	END=22199391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	22199392	.	G	.	.	PASS	END=22199425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	22199426	.	T	.	.	PASS	END=22199459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	22199460	.	G	.	.	PASS	END=22199499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	22199500	.	C	.	.	PASS	END=22199561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	22199562	.	G	.	.	PASS	END=22199600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	22199601	.	C	.	.	PASS	END=22199634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	22199635	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:81:99:60
chr1	22199817	.	C	.	.	PASS	END=22199820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	22199821	.	G	A	647.74	PASS	BaseQRankSum=-0.300;DP=39;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.614;QD=16.61;ReadPosRankSum=-0.500;SB=-155.36	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:16,23:39:99:678,0,483:60:99:0.590
chr1	22199822	.	G	.	.	PASS	END=22199835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	22199836	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:30:60
chr1	22199837	.	C	.	.	PASS	END=22199842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr1	22199843	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr1	22199844	.	A	.	.	PASS	END=22199847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	22199848	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:75:60
chr1	22199849	.	C	.	.	PASS	END=22199865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	22199866	.	A	.	.	PASS	END=22199903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	22199904	.	A	.	.	PASS	END=22199968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	22200367	.	C	.	.	PASS	END=22200373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	22200374	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:76:60
chr1	22200375	.	C	.	.	PASS	END=22200394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:93:60
chr1	22200395	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:39:60
chr1	22200396	.	C	.	.	PASS	END=22200403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	22200404	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:32:60
chr1	22200405	.	C	.	.	PASS	END=22200429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	22200430	.	C	.	.	PASS	END=22200485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:59
chr1	22200486	.	A	.	.	PASS	END=22200555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	22200848	.	G	.	.	PASS	END=22200875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	22200876	.	G	.	.	PASS	END=22200885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	22200886	.	G	.	.	PASS	END=22200939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	22200940	.	G	.	.	PASS	END=22201083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	22201084	.	T	.	249.65	PASS	DP=171;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:135:171:99:60:99
chr1	22201085	.	G	.	.	PASS	END=22201173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	22201174	.	T	.	.	PASS	END=22201206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	22201207	.	A	.	.	PASS	END=22201238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	22201239	.	G	.	.	PASS	END=22201273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	22201333	.	G	.	.	PASS	END=22201370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	22201371	.	G	.	.	PASS	END=22201401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	22201402	.	G	.	.	PASS	END=22201502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	22201503	.	T	.	.	PASS	END=22201526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	22201527	.	G	.	.	PASS	END=22201546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	22202071	.	T	.	.	PASS	END=22202108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	22202109	.	C	T	3883.40	PASS	DP=122;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=13.4679;MQ=60;MQ0=0;QD=31.83;SB=-1201.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,122:122:99:3883,292,0:60:99:1.000
chr1	22202110	.	G	.	.	PASS	END=22202135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	22202136	.	C	.	.	PASS	END=22202228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	22202229	.	C	.	.	PASS	END=22202291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	22202305	.	A	.	.	PASS	END=22202435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	22202436	.	T	.	.	PASS	END=22202472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	22202473	.	T	.	.	PASS	END=22202493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	22202494	.	C	.	.	PASS	END=22202527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	22202528	.	G	.	.	PASS	END=22202542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	22202543	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:36:28:60
chr1	22202544	.	A	.	.	PASS	END=22202559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	22202560	.	T	.	.	PASS	END=22202565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	22202566	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:56:60
chr1	22202567	.	G	.	.	PASS	END=22202586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	22202671	.	G	.	.	PASS	END=22202713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	22202714	.	C	.	.	PASS	END=22202823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	22202824	.	G	.	.	PASS	END=22202864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	22202865	.	T	.	.	PASS	END=22202888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	22202889	.	C	.	.	PASS	END=22202949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	22202954	.	T	.	.	PASS	END=22202969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	22202970	.	C	.	.	PASS	END=22202992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	22202993	.	T	.	.	PASS	END=22203015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	22203016	.	T	.	.	PASS	END=22203035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	22203036	.	T	.	.	PASS	END=22203143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	22203144	.	T	.	.	PASS	END=22203166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	22203167	.	T	.	.	PASS	END=22203184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	22203185	.	A	.	.	PASS	END=22203196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	22204628	.	C	.	.	PASS	END=22204646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	22204647	.	G	.	.	PASS	END=22204743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	22204744	.	G	.	.	PASS	END=22204780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	22204781	.	G	.	.	PASS	END=22204795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	22204796	.	T	.	.	PASS	END=22204797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	22204832	.	G	.	.	PASS	END=22204834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	22204835	.	C	.	.	PASS	END=22204838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	22204839	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:54:60
chr1	22204840	.	G	.	.	PASS	END=22204841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	22204842	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:54:60
chr1	22204843	.	G	.	.	PASS	END=22204846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	22204847	.	C	.	.	PASS	END=22204848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:60
chr1	22204849	.	G	.	.	PASS	END=22204851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	22204852	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:54:60
chr1	22204853	.	G	.	.	PASS	END=22204854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr1	22204855	.	G	.	.	PASS	END=22204856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:57:60
chr1	22204857	.	G	.	.	PASS	END=22204859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	22204860	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:63:60
chr1	22204861	.	G	.	.	PASS	END=22204863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	22204864	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:69:60
chr1	22204865	.	G	.	.	PASS	END=22204866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	22204867	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr1	22204868	.	G	.	.	PASS	END=22204871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	22204872	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:60
chr1	22204873	.	G	.	.	PASS	END=22204876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	22204877	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:72:60
chr1	22204878	.	G	.	.	PASS	END=22204880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	22204881	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:72:60
chr1	22204882	.	G	.	.	PASS	END=22204885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	22204886	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:57:60
chr1	22204887	.	G	.	.	PASS	END=22204892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	22204893	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:63:60
chr1	22204894	.	G	.	.	PASS	END=22204896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	22204897	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:69:60
chr1	22204898	.	G	.	.	PASS	END=22204930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	22204931	.	G	.	.	PASS	END=22204995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	22204996	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:69:60
chr1	22204997	.	G	.	.	PASS	END=22205037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	22205038	.	C	.	.	PASS	END=22205087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	22205088	.	G	.	.	PASS	END=22205106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	22205107	.	C	.	.	PASS	END=22205192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	22205193	.	T	.	.	PASS	END=22205207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	22205436	.	C	.	.	PASS	END=22205457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	22205458	.	A	.	.	PASS	END=22205459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:69:60
chr1	22205460	.	C	.	.	PASS	END=22205465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	22205466	.	T	C	1369.36	PASS	DP=51;Dels=0.02;FS=0.000;HRun=7;HaplotypeScore=17.1691;MQ=60;MQ0=0;QD=26.85;SB=-753.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,50:50:99:1402,108,0:60:99:1.000
chr1	22205467	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:96:60
chr1	22205468	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:48:60
chr1	22205469	.	C	.	.	PASS	END=22205470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	22205471	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:69:60
chr1	22205472	.	G	.	.	PASS	END=22205547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:93:60
chr1	22205548	.	T	.	.	PASS	END=22205601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	22205602	.	T	.	.	PASS	END=22205645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	22205646	.	C	.	.	PASS	END=22205665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	22206549	.	C	.	.	PASS	END=22206585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	22206586	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:66:60
chr1	22206587	.	T	.	.	PASS	END=22206601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr1	22206602	.	G	.	.	PASS	END=22206608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	22206609	.	G	.	.	PASS	END=22206639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	22206640	.	C	.	.	PASS	END=22206648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	22206649	.	T	C	3211.10	PASS	DP=111;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;QD=28.93;SB=-1424.99	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,111:111:99:3244,241,0:60:99:1.000
chr1	22206650	.	T	.	.	PASS	END=22206758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	22206759	.	G	.	.	PASS	END=22206798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	22206805	.	C	.	.	PASS	END=22206860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	22206861	.	C	.	.	PASS	END=22206880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	22206881	.	G	.	.	PASS	END=22206941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	22206942	.	G	A	4851.46	PASS	DP=162;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=12.3622;MQ=60;MQ0=0;QD=29.95;SB=-2952.99	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,162:162:99:4851,364,0:60:99:1.000
chr1	22206943	.	G	.	.	PASS	END=22206998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	22206999	.	C	.	.	PASS	END=22207012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	22207013	.	C	.	.	PASS	END=22207031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	22207032	.	A	.	.	PASS	END=22207070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	22207071	.	G	.	.	PASS	END=22207129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	22207130	.	G	.	.	PASS	END=22207140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	22207141	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:68:68:60
chr1	22207142	.	C	.	.	PASS	END=22207155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	22207156	.	A	.	.	PASS	END=22207189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	22207190	.	G	.	.	PASS	END=22207234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	22207235	.	T	C	4589.02	PASS	DP=160;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=12.4029;MQ=60;MQ0=0;QD=28.68;SB=-2661.86	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,159:160:99:4589,346,0:60:99:1.000
chr1	22207236	.	G	.	.	PASS	END=22207305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	22207306	.	A	.	.	PASS	END=22207346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	22207347	.	T	.	.	PASS	END=22207378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	22207379	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:78:99:60
chr1	22207781	.	G	.	.	PASS	END=22207804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:90:61
chr1	22207804	.	ACCCAGGGTGGCAG	A	7976.17	PASS	DP=60;FS=0.000;HRun=0;HaplotypeScore=112.6670;MQ=61;MQ0=0;QD=132.94;SB=-2703.06	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:5,55:60:99:7976,163,0:61:99:0.917
chr1	22207805	.	C	.	.	LowGQX	DP=60;MQ=61;MQ0=0	GT:AD:DP:MQ	.:5:5:61
chr1	22207806	.	C	.	.	LowGQX	DP=59;MQ=61;MQ0=0	GT:AD:DP:MQ	.:4:4:61
chr1	22207807	.	C	.	.	LowGQX	DP=58;MQ=61;MQ0=0	GT:AD:DP:MQ	.:3:3:61
chr1	22207808	.	A	.	.	LowGQX	DP=58;MQ=61;MQ0=0	GT:AD:DP:MQ	.:3:3:61
chr1	22207809	.	G	.	.	LowGQX	DP=58;MQ=61;MQ0=0	GT:AD:DP:MQ	.:3:3:61
chr1	22207810	.	G	.	.	LowGQX	DP=58;MQ=61;MQ0=0	GT:AD:DP:MQ	.:3:3:61
chr1	22207811	.	G	.	.	LowGQX	END=22207817	GT	.
chr1	22207818	.	C	.	.	PASS	END=22207848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:97:60
chr1	22207849	.	G	.	.	PASS	END=22207929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	22207930	.	C	.	.	PASS	END=22207957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:92:60
chr1	22207958	.	T	.	.	PASS	END=22207980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	22207981	.	T	.	.	PASS	END=22207990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	22207991	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:36:60
chr1	22207992	.	A	.	.	PASS	END=22207997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	22207998	.	G	.	.	PASS	END=22208017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	22208018	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr1	22208019	.	G	.	.	PASS	END=22208029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	22208030	.	C	T	348.29	PASS	DP=15;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=23.22;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,15:15:30.09:381,30,0:60:30:1.000
chr1	22208031	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:45:60
chr1	22208032	.	T	.	.	PASS	END=22208037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	22208038	.	T	.	.	PASS	END=22208041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	22208042	.	T	.	.	LowGQX	END=22208043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	22208044	.	A	.	.	PASS	END=22208046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	22210970	.	A	.	.	PASS	END=22210988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:86:60
chr1	22210989	.	C	.	.	PASS	END=22211015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	22211016	.	C	.	.	PASS	END=22211038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	22211039	.	G	.	.	PASS	END=22211161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:60
chr1	22211162	.	A	.	.	PASS	END=22211221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	22211222	.	T	C	4142.14	PASS	BaseQRankSum=1.097;DP=235;Dels=0.00;FS=1.067;HRun=1;HaplotypeScore=37.3308;MQ=60;MQ0=0;MQRankSum=-0.015;QD=17.63;ReadPosRankSum=-0.256;SB=-1991.22	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:88,146:235:99:4142,0,2374:60:99:0.624
chr1	22211223	.	G	.	.	PASS	END=22211296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr1	22211297	.	G	.	.	PASS	END=22211417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:297:99:60
chr1	22211418	.	A	.	.	PASS	END=22211446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr1	22211447	.	T	.	.	PASS	END=22211477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	22211478	.	A	.	.	PASS	END=22211678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	22211679	.	T	.	336.96	PASS	DP=160;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:127:160:99:60:99
chr1	22211680	.	C	.	.	PASS	END=22211701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	22211762	.	C	.	.	PASS	END=22211885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:269:99:60
chr1	22211886	.	G	.	.	PASS	END=22211907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	22211908	.	T	.	.	PASS	END=22211917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	22211918	.	C	.	.	PASS	END=22211944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	22211945	.	C	.	.	PASS	END=22211977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	22211978	.	A	.	.	PASS	END=22211995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	22213657	.	A	.	.	PASS	END=22213670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:98:60
chr1	22213671	.	G	.	.	PASS	END=22213684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	22213685	.	C	.	.	PASS	END=22213714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	22213715	.	G	.	.	PASS	END=22213853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	22213854	.	C	.	.	PASS	END=22213904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	22213905	.	G	.	.	PASS	END=22213941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	22213942	.	C	.	.	PASS	END=22214126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	22214127	.	A	G	5560.58	PASS	BaseQRankSum=0.521;DP=191;Dels=0.00;FS=3.160;HRun=0;HaplotypeScore=20.2008;MQ=60;MQ0=0;MQRankSum=0.572;QD=29.11;ReadPosRankSum=-1.009;SB=-1884.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,189:191:99:5561,392,0:60:99:0.990
chr1	22214128	.	A	.	.	PASS	END=22214159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	22214160	.	T	.	.	PASS	END=22214185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	22214186	.	T	.	.	PASS	END=22214218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	22214380	.	C	.	.	PASS	END=22214416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:79:60
chr1	22214417	.	G	.	.	PASS	END=22214474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	22214475	.	T	.	.	PASS	END=22214511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	22214512	.	T	.	.	PASS	END=22214556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:83:60
chr1	22214557	.	G	.	.	PASS	END=22214563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr1	22214564	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:69:60
chr1	22214565	.	G	.	.	PASS	END=22214585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	22214586	.	A	.	.	PASS	END=22214587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	22214588	.	T	.	.	PASS	END=22214590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:69:60
chr1	22214591	.	G	.	.	PASS	END=22214596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	22214597	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:66:60
chr1	22214598	.	C	.	.	PASS	END=22214610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	22215138	.	C	.	.	LowGQX	END=22215237	GT	./.
chr1	22216375	.	A	.	.	PASS	END=22216387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	22216388	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:3:60
chr1	22216389	.	C	.	.	PASS	END=22216401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	22216402	.	C	.	.	PASS	END=22216412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	22216413	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	22216414	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:6:60
chr1	22216415	.	A	.	.	PASS	END=22216425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	22216426	.	A	.	.	PASS	END=22216427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	22216428	.	C	.	.	PASS	END=22216435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr1	22216436	.	T	.	.	PASS	END=22216455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	22216456	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr1	22216457	.	C	.	.	PASS	END=22216463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	22216464	.	A	.	.	PASS	END=22216484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	22216485	.	C	.	.	PASS	END=22216524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	22216525	.	C	.	.	PASS	END=22216565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr1	22216566	.	A	.	.	PASS	END=22216573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	22216574	.	C	A	976.11	PASS	BaseQRankSum=2.386;DP=78;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.5189;MQ=60;MQ0=0;MQRankSum=0.537;QD=12.51;ReadPosRankSum=-0.898;SB=-661.91	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,46:78:99:1006,0,627:60:99:0.605
chr1	22216575	.	C	.	.	PASS	END=22216603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	22216604	.	C	G	1090.48	PASS	BaseQRankSum=0.560;DP=80;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=14.2038;MQ=60;MQ0=0;MQRankSum=0.131;QD=13.63;ReadPosRankSum=0.141;SB=-605.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,46:80:99:1120,0,668:60:99:0.575
chr1	22216605	.	A	.	.	PASS	END=22216641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	22216642	.	T	.	.	PASS	END=22216677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:86:60
chr1	22216678	.	T	.	.	PASS	END=22216685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	22216869	.	C	.	.	PASS	END=22216873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	22216874	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:57:60
chr1	22216875	.	T	.	.	PASS	END=22216877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	22216878	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:57:60
chr1	22216879	.	C	.	.	PASS	END=22216882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	22216883	.	C	.	.	PASS	END=22216886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr1	22216887	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:60
chr1	22216888	.	C	.	.	PASS	END=22216891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	22216892	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:69:60
chr1	22216893	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:44:60
chr1	22216894	.	G	.	.	PASS	END=22216902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	22216903	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:72:60
chr1	22216904	.	G	.	.	PASS	END=22216931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:95:60
chr1	22216932	.	A	.	.	PASS	END=22217011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	22217012	.	G	.	.	PASS	END=22217097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	22217098	.	A	.	.	PASS	END=22217107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	22217108	.	G	A	2912.23	PASS	DP=105;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=29.5383;MQ=60;MQ0=0;QD=27.74;SB=-1668.24	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,105:105:99:2945,226,0:60:99:1.000
chr1	22217109	.	A	.	.	PASS	END=22217143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	22217144	.	G	.	.	PASS	END=22217238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	22222364	.	G	.	.	PASS	END=22222383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	22222384	.	G	.	.	PASS	END=22222402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	22222403	.	G	.	.	PASS	END=22222443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	22222444	.	C	.	.	PASS	END=22222510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	22222617	.	C	.	.	PASS	END=22222647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr1	22222648	.	G	.	.	PASS	END=22222669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	22222670	.	C	.	.	PASS	END=22222708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	22222709	.	A	.	.	PASS	END=22222778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	22222779	.	C	.	.	PASS	END=22222811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	22222812	.	A	.	.	PASS	END=22222836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	22222837	.	C	.	.	PASS	END=22222851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr1	22222852	.	A	.	.	PASS	END=22222854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	22263539	.	C	.	.	LowGQX	END=22263756	GT	./.
chr1	22303505	.	G	.	.	LowGQX	END=22303604	GT	./.
chr1	22304328	.	A	.	.	LowGQX	END=22304484	GT	./.
chr1	22304855	.	C	.	.	LowGQX	END=22304954	GT	./.
chr1	22307315	.	A	.	.	LowGQX	END=22307324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22307325	.	G	.	.	LowGQX	END=22307416	GT	./.
chr1	22307529	.	A	.	.	LowGQX	END=22307667	GT	./.
chr1	22310185	.	A	.	.	LowGQX	END=22310325	GT	./.
chr1	22310680	.	A	.	.	LowGQX	END=22310826	GT	./.
chr1	22313022	.	A	.	.	LowGQX	END=22313178	GT	./.
chr1	22315714	.	T	.	.	LowGQX	END=22315766	GT	./.
chr1	22315767	.	C	.	.	LowGQX;LowMQ	END=22315813	GT	./.
chr1	22324612	.	C	.	.	LowGQX	END=22324691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:50
chr1	22324692	.	G	.	.	LowGQX	.	GT	./.
chr1	22324693	.	T	.	.	LowGQX	END=22324704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22324705	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	22324706	.	G	.	.	LowGQX	END=22324711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22328140	.	G	.	.	LowGQX	END=22328239	GT	./.
chr1	22328962	.	A	.	.	LowGQX	END=22328964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	22328965	.	A	.	.	LowGQX	.	GT	./.
chr1	22328966	.	T	.	.	LowGQX	END=22328969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	22328970	.	C	.	.	LowGQX	END=22328981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:37
chr1	22328982	.	T	.	33	LowGQX	DP=2;MQ=37;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:37:3
chr1	22328983	.	A	.	.	LowGQX	END=22328991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:37
chr1	22328992	.	C	.	33	LowGQX	DP=2;MQ=37;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:37:3
chr1	22328993	.	T	.	.	LowGQX	END=22329014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:37
chr1	22329015	.	T	.	.	LowGQX	.	GT	./.
chr1	22329016	.	T	.	.	LowGQX	END=22329025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:34
chr1	22329026	.	A	.	33.01	LowGQX	DP=3;MQ=34;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:34:3
chr1	22329027	.	G	.	.	LowGQX	END=22329051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:34
chr1	22329052	.	T	.	33.01	LowGQX	DP=3;MQ=34;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:34:3
chr1	22329053	.	C	.	.	LowGQX	END=22329100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:34
chr1	22329101	.	A	.	.	LowGQX	END=22329108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	22329109	.	T	.	.	LowGQX	.	GT	./.
chr1	22329110	.	A	.	.	LowGQX	END=22329114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	22329115	.	T	.	.	LowGQX	.	GT	./.
chr1	22329116	.	G	.	.	LowGQX	END=22329118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	22329489	.	C	.	.	LowGQX	END=22329588	GT	./.
chr1	22331938	.	A	.	.	LowGQX	END=22332028	GT	./.
chr1	22332029	.	C	.	.	LowGQX	END=22332039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22332153	.	A	.	.	LowGQX	END=22332224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22332225	.	A	.	.	LowGQX	.	GT	./.
chr1	22332226	.	T	.	.	LowGQX	END=22332267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22332268	.	A	.	.	LowGQX	.	GT	./.
chr1	22332269	.	C	.	.	LowGQX	END=22332293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22333369	.	A	.	.	LowGQX	END=22333509	GT	./.
chr1	22333864	.	A	.	.	LowGQX	END=22333913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22333914	.	T	.	.	LowGQX	END=22333935	GT	./.
chr1	22333936	.	G	.	.	LowGQX	END=22333941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22333942	.	C	.	.	LowGQX	.	GT	./.
chr1	22333943	.	T	.	.	LowGQX	END=22333956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22333957	.	C	.	.	LowGQX	.	GT	./.
chr1	22333958	.	G	.	.	LowGQX	END=22333970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22333971	.	T	.	.	LowGQX	.	GT	./.
chr1	22333972	.	G	.	.	LowGQX	END=22334005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22334006	.	A	.	.	LowGQX	END=22334007	GT	./.
chr1	22334008	.	C	.	.	LowGQX	END=22334010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22336166	.	C	.	.	LowGQX	END=22336352	GT	./.
chr1	22336514	.	A	.	.	LowGQX	END=22336673	GT	./.
chr1	22338842	.	C	.	.	LowGQX	END=22338845	GT	./.
chr1	22338846	.	G	.	.	LowGQX;LowMQ	END=22339001	GT	./.
chr1	22404970	.	C	.	.	LowGQX	END=22404997	GT	./.
chr1	22404998	.	G	.	.	LowGQX	END=22405016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405017	.	A	.	.	LowGQX	.	GT	./.
chr1	22405018	.	A	.	.	LowGQX	END=22405020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405021	.	C	.	.	LowGQX	.	GT	./.
chr1	22405022	.	A	.	.	LowGQX	END=22405025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405026	.	C	.	.	LowGQX	.	GT	./.
chr1	22405027	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405028	.	C	.	.	LowGQX	.	GT	./.
chr1	22405029	.	C	.	.	LowGQX	END=22405033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405034	.	A	.	.	LowGQX	.	GT	./.
chr1	22405035	.	T	.	.	LowGQX	END=22405036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405037	.	C	.	.	LowGQX	.	GT	./.
chr1	22405038	.	T	.	.	LowGQX	END=22405042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405043	.	A	.	.	LowGQX	END=22405044	GT	./.
chr1	22405045	.	C	.	.	LowGQX	END=22405063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405064	.	A	.	.	LowGQX	.	GT	./.
chr1	22405065	.	T	.	.	LowGQX	END=22405069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405070	.	A	.	.	LowGQX	.	GT	./.
chr1	22405071	.	C	.	.	LowGQX	END=22405074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405075	.	C	.	.	LowGQX	END=22405076	GT	./.
chr1	22405077	.	G	.	.	LowGQX	END=22405078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405198	.	G	.	.	LowGQX	END=22405334	GT	./.
chr1	22405335	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405336	.	T	.	.	LowGQX	END=22405337	GT	./.
chr1	22405338	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405339	.	C	.	.	LowGQX	.	GT	./.
chr1	22405340	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405341	.	A	.	.	LowGQX	.	GT	./.
chr1	22405342	.	T	.	.	LowGQX	END=22405345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405346	.	G	.	.	LowGQX	END=22405353	GT	./.
chr1	22405354	.	T	.	.	LowGQX	END=22405358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405359	.	T	.	.	LowGQX	.	GT	./.
chr1	22405360	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405361	.	C	.	.	LowGQX	.	GT	./.
chr1	22405362	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405363	.	T	.	.	LowGQX	END=22405365	GT	./.
chr1	22405366	.	T	.	.	LowGQX	END=22405367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405368	.	G	.	.	LowGQX	END=22405369	GT	./.
chr1	22405370	.	A	.	.	LowGQX	END=22405371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22405372	.	G	.	.	LowGQX	END=22405374	GT	./.
chr1	22408202	.	T	.	.	LowGQX	END=22408301	GT	./.
chr1	22412930	.	A	.	.	LowGQX	END=22413043	GT	./.
chr1	22413160	.	A	.	.	LowGQX	END=22413347	GT	./.
chr1	22413348	.	G	.	.	LowGQX	END=22413361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22416431	.	T	.	.	LowGQX	END=22416530	GT	./.
chr1	22417916	.	T	.	.	LowGQX	END=22418015	GT	./.
chr1	22446492	.	C	.	.	PASS	END=22446504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	22446505	.	G	.	.	PASS	END=22446529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	22446530	.	G	.	.	PASS	END=22446554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	22446555	.	G	.	.	PASS	END=22446586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	22446587	.	A	.	.	PASS	END=22446624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	22446625	.	C	.	.	PASS	END=22446650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	22446651	.	G	.	.	PASS	END=22446695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr1	22446696	.	C	.	.	PASS	END=22446794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:281:99:60
chr1	22446795	.	C	.	.	PASS	END=22446826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	22446827	.	G	.	.	PASS	END=22446846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	22446847	.	G	.	.	PASS	END=22446858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	22446859	.	C	.	.	PASS	END=22446907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	22446908	.	C	.	.	PASS	END=22446951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	22446952	.	T	.	.	PASS	END=22446976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	22446977	.	A	.	.	PASS	END=22447006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	22447007	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:75:60
chr1	22447008	.	G	.	.	PASS	END=22447023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	22447024	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:60
chr1	22447025	.	G	.	.	PASS	END=22447029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	22447030	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:33:60
chr1	22447031	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:57:60
chr1	22447032	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:24:60
chr1	22447033	.	G	.	.	PASS	END=22447035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	22447036	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:48:60
chr1	22447037	.	C	.	.	PASS	END=22447039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	22447040	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:27:60
chr1	22447041	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:60:60
chr1	22447042	.	A	.	63.10	PASS	DP=24;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:19:24:33.10:60:33
chr1	22447043	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:72:60
chr1	22447044	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr1	22447045	.	A	.	60.09	PASS	DP=23;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:16:23:30.10:60:30
chr1	22447046	.	G	.	.	PASS	END=22447047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:39:60
chr1	22447048	.	T	.	57.07	LowGQX	DP=22;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:17:22:27.08:60:27
chr1	22447049	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:57:60
chr1	22447050	.	G	.	.	PASS	END=22447052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	22447053	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:21:60
chr1	22447054	.	G	.	.	PASS	END=22447055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	22447056	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:27:60
chr1	22447057	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:42:60
chr1	22447058	.	A	.	16.59	LowGQX	DP=20;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:12:20:0.19:60:0
chr1	22447059	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:63:60
chr1	22447060	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:60
chr1	22447061	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:54:60
chr1	22447653	.	C	.	.	PASS	END=22447658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:61
chr1	22447659	.	A	.	.	PASS	END=22447660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	22447661	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:72:60
chr1	22447662	.	C	.	.	PASS	END=22447681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	22447682	.	G	.	.	PASS	END=22447701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	22447702	.	A	.	.	PASS	END=22447740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	22447741	.	G	.	.	PASS	END=22447837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	22447838	.	A	.	.	PASS	END=22447883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	22447884	.	G	.	.	PASS	END=22447980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	22447981	.	C	.	.	PASS	END=22448077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	22448078	.	G	.	.	PASS	END=22448106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	22448107	.	G	.	.	PASS	END=22448120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:87:60
chr1	22453759	.	C	.	.	LowGQX	END=22453974	GT	./.
chr1	22456058	.	C	.	.	PASS	END=22456068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	22456069	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	22456070	.	C	.	.	PASS	END=22456078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	22456079	.	C	.	.	PASS	END=22456085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	22456086	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:57:60
chr1	22456087	.	G	.	.	PASS	END=22456093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	22456094	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:66:60
chr1	22456095	.	C	.	.	PASS	END=22456103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	22456104	.	C	.	.	PASS	END=22456147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	22456148	.	G	.	.	PASS	END=22456170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	22456171	.	T	.	.	PASS	END=22456201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	22456202	.	C	.	.	PASS	END=22456293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	22456294	.	C	.	.	PASS	END=22456323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	22456324	.	G	.	.	PASS	END=22456344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	22456345	.	C	.	.	PASS	END=22456352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	22456353	.	A	.	.	PASS	END=22456365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	22456366	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:49:60
chr1	22456367	.	T	.	.	PASS	END=22456374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	22456375	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:48:60
chr1	22456376	.	C	.	.	PASS	END=22456387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	22456388	.	T	.	.	PASS	END=22456395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	22469228	.	G	.	.	LowGQX	END=22469296	GT	./.
chr1	22469297	.	G	.	.	LowGQX	END=22469358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22469359	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	22469360	.	G	.	.	LowGQX	END=22469365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	22469366	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	22469367	.	C	.	.	LowGQX	END=22469390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	22469391	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	22469392	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	22469393	.	C	.	.	LowGQX	END=22469402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	22469403	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	22469404	.	G	.	.	LowGQX	END=22469409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22469410	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	22469411	.	C	.	.	LowGQX	END=22469449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22469450	.	C	.	.	LowGQX	END=22469466	GT	./.
chr1	22816391	.	C	.	.	PASS	END=22816392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:96:60
chr1	22816393	.	A	.	.	PASS	END=22816413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	22816414	.	G	.	.	PASS	END=22816436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	22816437	.	A	.	.	PASS	END=22816479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	22816480	.	G	.	.	PASS	END=22816486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	22816487	.	A	.	.	PASS	END=22816498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	22816499	.	G	.	.	PASS	END=22816541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:266:99:60
chr1	22816542	.	A	.	.	PASS	END=22816594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:345:99:60
chr1	22816595	.	C	.	.	PASS	END=22816755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:449:99:60
chr1	22816756	.	A	.	.	PASS	END=22816793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:365:99:60
chr1	22816794	.	A	.	.	PASS	END=22816810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:306:99:60
chr1	22816811	.	C	.	.	PASS	END=22816835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	22816836	.	C	.	.	PASS	END=22816847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	22816848	.	C	.	.	PASS	END=22816885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	22816886	.	C	.	.	PASS	END=22816909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	22816910	.	C	.	.	PASS	END=22816946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	22816947	.	G	.	.	PASS	END=22816965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	22816966	.	T	.	.	PASS	END=22816982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	22816983	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:34:21:60
chr1	22816984	.	A	.	.	PASS	END=22816988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	22816989	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:51:60
chr1	22816990	.	A	.	.	PASS	END=22817003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	22817004	.	T	.	.	PASS	END=22817005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	22817006	.	A	.	.	PASS	END=22817014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	22817015	.	A	.	.	PASS	END=22817025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	22817026	.	G	.	.	PASS	END=22817035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	22817036	.	A	.	.	PASS	END=22817037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	22817038	.	T	.	.	PASS	END=22817049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	22817050	.	A	.	.	LowGQX	END=22817051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	22817052	.	C	.	.	PASS	END=22817054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	22817055	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	22817056	.	G	.	.	PASS	END=22817058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	22817059	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	22817060	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	22817061	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:1:60
chr1	22817062	.	T	.	.	PASS	END=22817065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	22817066	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	22817067	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr1	22817068	.	A	.	.	LowGQX	END=22817069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	22817070	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	22817071	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	22817072	.	G	.	.	LowGQX	END=22817073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	22817074	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	22817075	.	G	.	.	LowGQX	END=22817080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	22817081	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	22817082	.	C	.	.	LowGQX	END=22817092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	22817093	.	G	.	.	LowGQX	END=22817096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	22817097	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	22817098	.	G	.	.	LowGQX	END=22817106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	22817107	.	T	.	.	LowGQX	END=22817111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	22817112	.	A	.	.	LowGQX	END=22817115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	22817116	.	A	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	22817117	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	22817118	.	A	.	.	LowGQX	END=22817119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	22817120	.	A	.	.	LowGQX	END=22817123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	22817124	.	C	.	.	LowGQX	END=22817125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	22817126	.	A	.	.	LowGQX	END=22817127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	22817128	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	22817129	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	22817130	.	C	.	.	LowGQX	END=22817135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	22817136	.	C	.	.	LowGQX	END=22817137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	22817138	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	22817139	.	G	.	.	LowGQX	END=22817145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	22817146	.	T	.	.	LowGQX	.	GT	./.
chr1	22817147	.	C	.	.	LowGQX	END=22817151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22817152	.	T	.	.	LowGQX	.	GT	./.
chr1	22817153	.	T	.	.	LowGQX	END=22817161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22817162	.	C	.	.	LowGQX	.	GT	./.
chr1	22817163	.	A	.	.	LowGQX	END=22817170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22817171	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	22817172	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22817173	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	22817174	.	T	.	.	LowGQX	END=22817189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22817842	.	T	.	.	PASS	END=22817953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	22817954	.	T	.	.	PASS	END=22818020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	22818021	.	A	.	.	PASS	END=22818040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	22818041	.	C	.	.	PASS	END=22818060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	22818061	.	T	.	.	PASS	END=22818069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	22818070	.	C	.	.	PASS	END=22818077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	22827934	.	A	.	.	PASS	END=22827945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	22827946	.	G	.	.	PASS	END=22827963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	22827964	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:50:60
chr1	22827965	.	T	.	.	PASS	END=22827980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	22827981	.	A	.	.	PASS	END=22828011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	22828012	.	G	.	.	PASS	END=22828045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	22828046	.	A	.	.	PASS	END=22828156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	22828157	.	T	.	.	PASS	END=22828169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	22828170	.	G	.	.	PASS	END=22828198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	22828199	.	T	.	.	PASS	END=22828209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	22828210	.	G	.	.	PASS	END=22828228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	22828741	.	T	.	.	PASS	END=22828854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	22828855	.	A	.	.	PASS	END=22828858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	22828859	.	T	.	.	PASS	END=22828864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	22828865	.	A	.	.	PASS	END=22828874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	22828875	.	C	.	.	PASS	END=22828894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	22828895	.	A	.	.	PASS	END=22828944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	22828945	.	C	.	.	PASS	END=22828950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	22828951	.	T	.	.	PASS	END=22828963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	22828964	.	C	.	.	PASS	END=22828984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	22828985	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:39:60
chr1	22832491	.	A	.	.	PASS	END=22832544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:85:59
chr1	22832545	.	A	.	.	PASS	END=22832638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	22832639	.	T	.	.	PASS	END=22832664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	22832665	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:71:60
chr1	22832666	.	C	.	.	PASS	END=22832677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	22832678	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:65:60
chr1	22832679	.	C	.	.	PASS	END=22832701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	22832702	.	T	.	.	PASS	END=22832713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	22832714	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:62:60
chr1	22832715	.	C	.	.	PASS	END=22832728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	22832729	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:45:60
chr1	22832730	.	C	.	.	PASS	END=22832742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	22832743	.	A	T	320.69	SB	BaseQRankSum=1.115;DP=25;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=0.190;QD=12.83;ReadPosRankSum=-0.734;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,12:25:99:351,0,411:60:99:0.480
chr1	22832744	.	A	.	.	PASS	END=22832757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	22832758	.	T	.	.	PASS	END=22832770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	22832771	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:12:60
chr1	22832772	.	T	.	.	PASS	END=22832773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr1	22832774	.	T	.	.	PASS	END=22832785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	22834443	.	G	.	.	PASS	END=22834492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	22834493	.	G	.	.	PASS	END=22834522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	22834523	.	G	.	.	PASS	END=22834648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	22834649	.	C	.	.	PASS	END=22834675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	22834676	.	A	.	.	PASS	END=22834681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	22834972	.	G	.	.	PASS	END=22834988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	22834989	.	T	.	.	PASS	END=22835008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	22835009	.	G	.	.	PASS	END=22835031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	22835032	.	A	.	.	PASS	END=22835085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	22835086	.	G	.	.	PASS	END=22835167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	22835168	.	A	.	.	PASS	END=22835196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	22835197	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:78:61:60
chr1	22835198	.	C	.	.	PASS	END=22835226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	22835227	.	A	.	.	PASS	END=22835238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	22835239	.	C	.	.	PASS	END=22835267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	22835268	.	T	.	.	PASS	END=22835275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	22835542	.	A	.	.	PASS	END=22835573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	22835574	.	T	.	.	PASS	END=22835598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:81:60
chr1	22835599	.	C	.	.	PASS	END=22835676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	22835677	.	A	G	870.05	PASS	BaseQRankSum=0.124;DP=83;Dels=0.00;FS=0.898;HRun=0;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=1.415;QD=10.48;ReadPosRankSum=0.243;SB=-427.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:46,37:83:99:900,0,1157:60:99:0.446
chr1	22835678	.	C	.	.	PASS	END=22835702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	22835703	.	C	.	.	PASS	END=22835715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:96:60
chr1	22835716	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:54:60
chr1	22835717	.	T	.	.	PASS	END=22835749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:60
chr1	22835750	.	A	.	.	PASS	END=22835777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	22837621	.	G	.	.	PASS	END=22837626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	22837627	.	C	.	227	PASS	DP=141;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:110:141:99:60:99
chr1	22837628	.	T	.	.	PASS	END=22837636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	22837637	.	T	.	.	PASS	END=22837789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	22837790	.	A	.	.	PASS	END=22837863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	22837864	.	G	.	.	PASS	END=22837881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	22837882	.	A	.	.	PASS	END=22837891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	22838118	.	C	.	.	PASS	END=22838135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	22838136	.	T	.	.	PASS	END=22838137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	22838138	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:51:60
chr1	22838139	.	G	.	.	PASS	END=22838144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	22838145	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:51:60
chr1	22838146	.	C	.	.	PASS	END=22838151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	22838152	.	A	.	.	PASS	END=22838153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:62:60
chr1	22838154	.	G	.	.	PASS	END=22838189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	22838190	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:57:60
chr1	22838191	.	A	.	.	PASS	END=22838237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	22838238	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:66:60
chr1	22838239	.	C	.	.	PASS	END=22838274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	22838275	.	C	.	.	PASS	END=22838294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:98:60
chr1	22838295	.	A	.	.	PASS	END=22838326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	22838327	.	C	.	.	PASS	END=22838348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	22838349	.	C	.	.	PASS	END=22838487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	22838488	.	C	.	.	PASS	END=22838518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	22838519	.	C	.	.	PASS	END=22838551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	22838552	.	G	.	.	PASS	END=22838607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	22838608	.	A	.	.	PASS	END=22838620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	22838621	.	G	.	.	PASS	END=22838634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	22838635	.	C	.	.	PASS	END=22838642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	22838643	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:63:60
chr1	22838644	.	A	.	.	PASS	END=22838666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:78:60
chr1	22838667	.	T	.	.	PASS	END=22838671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	22838672	.	T	.	.	PASS	END=22838678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	22839366	.	A	.	.	PASS	END=22839391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:87:60
chr1	22839392	.	C	.	.	PASS	END=22839418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	22839419	.	A	.	.	PASS	END=22839459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	22839460	.	T	.	.	PASS	END=22839546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	22839547	.	C	.	.	PASS	END=22839575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	22839576	.	C	.	.	PASS	END=22839600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	22839601	.	C	.	.	PASS	END=22839615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	22839616	.	C	.	.	PASS	END=22839623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	22839624	.	G	.	.	PASS	END=22839642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	22839643	.	A	.	.	PASS	END=22839663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	22839664	.	T	.	.	PASS	END=22839674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	22843742	.	A	.	.	PASS	END=22843817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	22843818	.	T	.	.	PASS	END=22843871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	22843872	.	C	.	.	PASS	END=22843892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	22843893	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:71:69:60
chr1	22843894	.	A	.	.	PASS	END=22843952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:82:60
chr1	22843953	.	T	.	.	PASS	END=22843965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	22843966	.	A	.	.	PASS	END=22843967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	22843968	.	A	.	.	PASS	END=22843975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	22843976	.	T	.	.	PASS	END=22844000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	22844001	.	C	.	.	PASS	END=22844008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	22846503	.	G	.	.	PASS	END=22846551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	22846552	.	A	.	.	PASS	END=22846657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	22846658	.	T	.	.	PASS	END=22846708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	22846709	.	G	A	2046.48	PASS	DP=73;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=14.2565;MQ=60;MQ0=0;QD=28.03;SB=-1146.60	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,73:73:99:2079,160,0:60:99:1.000
chr1	22846710	.	T	.	.	PASS	END=22846743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:98:60
chr1	22846744	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:75:60
chr1	22846745	.	G	.	.	PASS	END=22846769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	22846770	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:72:60
chr1	22846771	.	G	.	.	PASS	END=22846779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	22846780	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:72:60
chr1	22846781	.	G	.	.	PASS	END=22846787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	22846788	.	G	.	.	PASS	END=22846792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	22846793	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:66:60
chr1	22846794	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:39:60
chr1	22846795	.	T	.	.	PASS	END=22846811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	22846812	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:36:60
chr1	22846813	.	T	.	.	PASS	END=22846819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	22847938	.	T	.	.	PASS	END=22847955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	22847956	.	T	.	.	PASS	END=22847975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	22847976	.	A	.	.	PASS	END=22847985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	22847986	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:68:60
chr1	22847987	.	A	.	.	PASS	END=22848011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	22848012	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:69:60
chr1	22848013	.	A	.	.	PASS	END=22848049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	22848050	.	A	.	.	PASS	END=22848070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	22848071	.	C	.	.	PASS	END=22848097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	22848098	.	A	.	.	PASS	END=22848176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:79:60
chr1	22848177	.	G	.	.	PASS	END=22848202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	22848819	.	G	.	.	PASS	END=22848903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	22848904	.	G	.	.	PASS	END=22848922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	22848923	.	T	.	.	PASS	END=22848981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:82:60
chr1	22848982	.	T	.	.	PASS	END=22849002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	22849003	.	A	C	555.07	PASS	BaseQRankSum=3.318;DP=38;Dels=0.00;FS=1.528;HRun=0;HaplotypeScore=1.9886;MQ=60;MQ0=0;MQRankSum=-0.745;QD=14.61;ReadPosRankSum=1.447;SB=-123.83	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:18,20:38:99:585,0,446:60:99:0.526
chr1	22849004	.	T	.	.	PASS	END=22849007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	22850660	.	A	.	.	PASS	END=22850674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	22850675	.	C	.	.	PASS	END=22850678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:60
chr1	22850679	.	C	.	.	PASS	END=22850681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr1	22850682	.	C	.	.	PASS	END=22850693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	22850694	.	G	.	.	PASS	END=22850713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	22850714	.	C	.	.	PASS	END=22850727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	22850728	.	T	.	.	PASS	END=22850766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	22850767	.	T	.	.	PASS	END=22850787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	22850788	.	G	.	.	PASS	END=22850887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	22850888	.	C	.	.	PASS	END=22850925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	22850926	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:66:60
chr1	22850927	.	A	.	.	PASS	END=22850931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	22850932	.	G	.	.	PASS	END=22850948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:96:60
chr1	22850949	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:57:60
chr1	22850950	.	C	.	.	PASS	END=22850959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	22850960	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:42:60
chr1	22850961	.	A	.	.	PASS	END=22850988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	22852644	.	G	.	.	PASS	END=22852650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	22852651	.	C	.	.	PASS	END=22852661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	22852662	.	G	.	.	PASS	END=22852694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	22852695	.	G	.	.	PASS	END=22852714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	22852715	.	G	C	1692.02	PASS	BaseQRankSum=-0.022;DP=145;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=7.6803;MQ=60;MQ0=0;MQRankSum=-1.437;QD=11.67;ReadPosRankSum=-0.801;SB=-845.93	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:72,73:145:99:1722,0,1847:60:99:0.503
chr1	22852716	.	G	.	.	PASS	END=22852728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	22852729	.	A	.	.	PASS	END=22852842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	22852843	.	A	.	.	PASS	END=22852871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	22852872	.	T	.	.	PASS	END=22852882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	22852883	.	C	.	.	PASS	END=22852920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	22852921	.	T	.	.	PASS	END=22852940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	22890126	.	G	.	.	LowGQX	END=22890276	GT	./.
chr1	22895705	.	T	.	.	LowGQX	END=22895864	GT	./.
chr1	22902708	.	A	.	.	LowGQX	END=22903107	GT	./.
chr1	22903108	.	G	.	.	LowGQX	END=22903132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22903133	.	C	.	.	LowGQX	END=22903134	GT	./.
chr1	22903135	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22903136	.	T	.	.	LowGQX	.	GT	./.
chr1	22903137	.	C	.	.	LowGQX	END=22903145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22903146	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	22903147	.	C	.	.	LowGQX	END=22903165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22903166	.	G	.	.	LowGQX	.	GT	./.
chr1	22903167	.	C	.	.	LowGQX	END=22903168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22903169	.	A	.	.	LowGQX	.	GT	./.
chr1	22903170	.	T	.	.	LowGQX	END=22903182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22903183	.	G	.	10.71	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.05:60:0
chr1	22903184	.	G	.	.	LowGQX	END=22903204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	22903205	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	22903206	.	C	.	.	LowGQX	END=22903238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	22903239	.	G	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr1	22903240	.	G	.	.	LowGQX	END=22903256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	22903257	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	22903258	.	C	.	.	LowGQX	END=22903291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22903292	.	A	.	.	LowGQX	.	GT	./.
chr1	22903293	.	G	.	.	LowGQX	END=22903304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22903305	.	A	.	.	LowGQX	.	GT	./.
chr1	22903306	.	G	.	.	LowGQX	END=22903307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22903308	.	G	.	.	LowGQX	.	GT	./.
chr1	22903309	.	G	.	.	LowGQX	END=22903319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22903320	.	T	.	.	LowGQX	.	GT	./.
chr1	22903321	.	C	.	.	LowGQX	END=22903323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22903324	.	C	.	.	LowGQX	.	GT	./.
chr1	22903325	.	A	.	.	LowGQX	END=22903333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22903334	.	T	.	.	LowGQX	.	GT	./.
chr1	22903335	.	G	.	.	LowGQX	END=22903336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22903337	.	A	.	.	LowGQX	.	GT	./.
chr1	22903338	.	G	.	.	LowGQX	END=22903340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22903341	.	C	.	.	LowGQX	.	GT	./.
chr1	22903342	.	C	.	.	LowGQX	END=22903347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22903348	.	C	.	.	LowGQX	.	GT	./.
chr1	22903349	.	G	.	.	LowGQX	END=22903354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22903355	.	C	.	.	LowGQX	.	GT	./.
chr1	22903356	.	G	.	.	LowGQX	END=22903360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22903361	.	G	.	.	LowGQX	.	GT	./.
chr1	22903362	.	A	.	.	LowGQX	END=22903364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22903365	.	C	.	.	LowGQX	END=22903367	GT	./.
chr1	22903368	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22903369	.	T	.	.	LowGQX	.	GT	./.
chr1	22903370	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22903371	.	T	.	.	LowGQX	.	GT	./.
chr1	22903372	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22903373	.	G	.	.	LowGQX	.	GT	./.
chr1	22903374	.	G	.	.	LowGQX	END=22903375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22912971	.	A	.	.	LowGQX	END=22913130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22915362	.	A	.	.	LowGQX	END=22915379	GT	./.
chr1	22915380	.	A	.	.	LowGQX	END=22915394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22915395	.	C	.	.	LowGQX	.	GT	./.
chr1	22915396	.	A	.	.	LowGQX	END=22915408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22915409	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	22915410	.	A	.	.	LowGQX	END=22915417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22915418	.	C	.	.	LowGQX	.	GT	./.
chr1	22915419	.	T	.	.	LowGQX	END=22915423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22915424	.	A	.	.	LowGQX	.	GT	./.
chr1	22915425	.	G	.	.	LowGQX	END=22915438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22915439	.	T	.	.	LowGQX	.	GT	./.
chr1	22915440	.	G	.	.	LowGQX	END=22915449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22915450	.	G	.	.	LowGQX	.	GT	./.
chr1	22915451	.	G	.	.	LowGQX	END=22915460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22915461	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	22915462	.	A	.	.	LowGQX	END=22915485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22915486	.	C	.	.	LowGQX	.	GT	./.
chr1	22915487	.	G	.	.	LowGQX	END=22915508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22915509	.	C	.	.	LowGQX	.	GT	./.
chr1	22915510	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	22915511	.	G	.	.	LowGQX	END=22915517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22915518	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	22915519	.	T	.	.	LowGQX	END=22915522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	22915523	.	G	.	.	LowGQX	END=22915874	GT	./.
chr1	22919817	.	A	.	.	LowGQX	END=22919836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22919837	.	T	.	.	LowGQX	.	GT	./.
chr1	22919838	.	G	.	.	LowGQX	END=22919843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22919844	.	T	.	.	LowGQX	.	GT	./.
chr1	22919845	.	C	.	.	LowGQX	END=22919906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22919907	.	C	.	.	LowGQX	END=22919945	GT	./.
chr1	22920015	.	A	.	.	LowGQX	END=22920181	GT	./.
chr1	22921720	.	C	.	.	LowGQX	END=22921735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22921736	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	22921737	.	A	.	.	LowGQX	END=22921746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22921747	.	T	.	.	LowGQX	.	GT	./.
chr1	22921748	.	T	.	.	LowGQX	END=22921749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22921750	.	T	.	.	LowGQX	.	GT	./.
chr1	22921751	.	C	.	.	LowGQX	END=22921769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22921770	.	A	.	.	LowGQX	.	GT	./.
chr1	22921771	.	T	.	.	LowGQX	END=22921778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22921779	.	C	.	.	LowGQX	END=22921819	GT	./.
chr1	22922583	.	G	.	.	LowGQX	END=22922682	GT	./.
chr1	22923803	.	A	.	.	LowGQX	END=22923884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22923885	.	T	.	.	LowGQX	END=22923971	GT	./.
chr1	22924167	.	A	.	.	LowGQX	END=22924356	GT	./.
chr1	22924572	.	T	.	.	LowGQX	END=22924574	GT	./.
chr1	22924575	.	T	.	.	LowGQX	END=22924598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924599	.	C	.	.	LowGQX	.	GT	./.
chr1	22924600	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924601	.	G	.	.	LowGQX	.	GT	./.
chr1	22924602	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924603	.	G	.	.	LowGQX	END=22924604	GT	./.
chr1	22924605	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924606	.	C	.	.	LowGQX	.	GT	./.
chr1	22924607	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924608	.	A	.	.	LowGQX	.	GT	./.
chr1	22924609	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924610	.	A	.	.	LowGQX	.	GT	./.
chr1	22924611	.	C	.	.	LowGQX	END=22924619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924620	.	A	.	.	LowGQX	.	GT	./.
chr1	22924621	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924622	.	C	.	.	LowGQX	.	GT	./.
chr1	22924623	.	C	.	.	LowGQX	END=22924625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924626	.	T	.	.	LowGQX	.	GT	./.
chr1	22924627	.	C	.	.	LowGQX	END=22924628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924629	.	C	.	.	LowGQX	END=22924630	GT	./.
chr1	22924631	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924632	.	C	.	.	LowGQX	.	GT	./.
chr1	22924633	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924634	.	G	.	.	LowGQX	.	GT	./.
chr1	22924635	.	C	.	.	LowGQX	END=22924636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924637	.	C	.	.	LowGQX	END=22924638	GT	./.
chr1	22924639	.	C	.	.	LowGQX	END=22924642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924643	.	G	.	.	LowGQX	.	GT	./.
chr1	22924644	.	G	.	.	LowGQX	END=22924650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924651	.	G	.	.	LowGQX	.	GT	./.
chr1	22924652	.	G	.	.	LowGQX	END=22924655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924656	.	T	.	.	LowGQX	END=22924657	GT	./.
chr1	22924658	.	A	.	.	LowGQX	END=22924669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924670	.	T	.	.	LowGQX	.	GT	./.
chr1	22924671	.	A	.	.	LowGQX	END=22924674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924675	.	G	.	.	LowGQX	.	GT	./.
chr1	22924676	.	G	.	.	LowGQX	END=22924679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924680	.	A	.	.	LowGQX	.	GT	./.
chr1	22924681	.	C	.	.	LowGQX	END=22924682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924683	.	G	.	.	LowGQX	.	GT	./.
chr1	22924684	.	C	.	.	LowGQX	END=22924685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924686	.	C	.	.	LowGQX	.	GT	./.
chr1	22924687	.	T	.	.	LowGQX	END=22924689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924690	.	G	.	.	LowGQX	.	GT	./.
chr1	22924691	.	G	.	.	LowGQX	END=22924699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924700	.	C	.	.	LowGQX	.	GT	./.
chr1	22924701	.	T	.	.	LowGQX	END=22924713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924714	.	C	.	.	LowGQX	END=22924715	GT	./.
chr1	22924716	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924717	.	A	.	.	LowGQX	.	GT	./.
chr1	22924718	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924719	.	C	.	.	LowGQX	.	GT	./.
chr1	22924720	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924721	.	C	.	.	LowGQX	.	GT	./.
chr1	22924722	.	T	.	.	LowGQX	END=22924723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22924724	.	C	.	.	LowGQX	.	GT	./.
chr1	22925329	.	A	.	.	LowGQX	END=22925348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	22925349	.	A	.	.	LowGQX	END=22925359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	22925360	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	22925361	.	C	.	6.89	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.02:60:0
chr1	22925362	.	T	.	.	LowGQX	END=22925370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	22925371	.	T	.	.	LowGQX	END=22925372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	22925373	.	C	.	.	LowGQX	END=22925378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	22925379	.	G	.	.	LowGQX	END=22925380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	22925381	.	A	.	.	LowGQX	END=22925391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	22925392	.	G	.	.	LowGQX	END=22925393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	22925394	.	A	.	.	LowGQX	END=22925397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	22925398	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	22925399	.	C	.	.	LowGQX	END=22925413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	22925414	.	G	.	.	LowGQX	END=22925416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:60
chr1	22925417	.	C	.	.	PASS	END=22925421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	22925422	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr1	22925423	.	C	.	.	PASS	END=22925463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	22925464	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:30:60
chr1	22925465	.	C	.	.	PASS	END=22925523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	22925524	.	C	.	.	PASS	END=22925529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	22925530	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	22925531	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:1:60
chr1	22925532	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	22925533	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	22925534	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	22925535	.	A	.	.	LowGQX	END=22925541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	22925542	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	22927131	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	22927132	.	A	.	.	LowGQX	END=22927133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	22927134	.	C	.	.	LowGQX	END=22927140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	22927141	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	22927142	.	T	.	.	LowGQX	END=22927152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	22927153	.	G	.	.	LowGQX	END=22927157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	22927158	.	G	.	.	LowGQX	END=22927159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	22927160	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	22927161	.	A	.	.	LowGQX	END=22927168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	22927169	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	22927170	.	T	.	.	LowGQX	END=22927180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	22927181	.	G	.	.	LowGQX	END=22927187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	22927188	.	A	.	.	LowGQX	END=22927208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	22927209	.	T	.	.	LowGQX	END=22927221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	22927222	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	22927223	.	G	.	.	LowGQX	END=22927234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	22927235	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	22927236	.	T	.	.	LowGQX	END=22927237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:60
chr1	22927238	.	G	.	.	PASS	END=22927244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	22927245	.	T	.	.	LowGQX	END=22927246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	22927247	.	A	.	.	PASS	END=22927253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	22927254	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	22927255	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	22927256	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	22927257	.	T	.	.	PASS	END=22927258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	22927259	.	C	.	.	LowGQX	END=22927261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	22927262	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	22927263	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	22927264	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	22927265	.	T	.	.	LowGQX	END=22927268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	22927269	.	G	.	.	PASS	END=22927273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	22927274	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	22927275	.	G	.	.	PASS	END=22927277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	22927278	.	C	.	.	LowGQX	END=22927279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr1	22927280	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	22927281	.	A	.	.	LowGQX	END=22927282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr1	22927283	.	T	.	.	PASS	END=22927284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	22927285	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	22927286	.	A	.	.	PASS	END=22927289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	22927290	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	22927291	.	G	.	.	PASS	END=22927295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	22927296	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	22927297	.	C	.	.	PASS	END=22927298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	22927299	.	G	.	.	LowGQX	END=22927300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr1	22927301	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	22927302	.	A	.	.	LowGQX	END=22927304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:60
chr1	22927305	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	22927389	.	A	.	.	LowGQX	END=22927409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	22927410	.	A	.	.	LowGQX	END=22927425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	22927426	.	C	.	.	LowGQX	END=22927433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927434	.	T	.	.	LowGQX	END=22927435	GT	./.
chr1	22927436	.	G	.	.	LowGQX	END=22927438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927439	.	T	.	.	LowGQX	.	GT	./.
chr1	22927440	.	G	.	.	LowGQX	END=22927457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927458	.	A	.	.	LowGQX	END=22927583	GT	./.
chr1	22927780	.	C	.	.	LowGQX	END=22927786	GT	./.
chr1	22927787	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927788	.	C	.	.	LowGQX	.	GT	./.
chr1	22927789	.	T	.	.	LowGQX	END=22927799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927800	.	C	.	.	LowGQX	.	GT	./.
chr1	22927801	.	C	.	.	LowGQX	END=22927807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927808	.	C	.	.	LowGQX	.	GT	./.
chr1	22927809	.	T	.	.	LowGQX	END=22927815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927816	.	G	.	.	LowGQX	.	GT	./.
chr1	22927817	.	G	.	.	LowGQX	END=22927823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927824	.	T	.	.	LowGQX	END=22927825	GT	./.
chr1	22927826	.	T	.	.	LowGQX	END=22927829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927830	.	C	.	.	LowGQX	.	GT	./.
chr1	22927831	.	T	.	.	LowGQX	END=22927836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927837	.	G	.	.	LowGQX	.	GT	./.
chr1	22927838	.	G	.	.	LowGQX	END=22927850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927851	.	G	.	.	LowGQX	END=22927852	GT	./.
chr1	22927853	.	T	.	.	LowGQX	END=22927862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927863	.	A	.	.	LowGQX	.	GT	./.
chr1	22927864	.	C	.	.	LowGQX	END=22927866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927867	.	T	.	.	LowGQX	.	GT	./.
chr1	22927868	.	G	.	.	LowGQX	END=22927877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927878	.	C	.	.	LowGQX	END=22927879	GT	./.
chr1	22927880	.	G	.	.	LowGQX	END=22927881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927882	.	A	.	.	LowGQX	.	GT	./.
chr1	22927883	.	C	.	.	LowGQX	END=22927890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927891	.	G	.	.	LowGQX	END=22927892	GT	./.
chr1	22927893	.	A	.	.	LowGQX	END=22927894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927895	.	G	.	.	LowGQX	END=22927896	GT	./.
chr1	22927897	.	G	.	.	LowGQX	END=22927898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927899	.	C	.	.	LowGQX	.	GT	./.
chr1	22927900	.	G	.	.	LowGQX	END=22927901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927902	.	T	.	.	LowGQX	.	GT	./.
chr1	22927903	.	A	.	.	LowGQX	END=22927904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927905	.	C	.	.	LowGQX	.	GT	./.
chr1	22927906	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927907	.	A	.	.	LowGQX	.	GT	./.
chr1	22927908	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927909	.	A	.	.	LowGQX	.	GT	./.
chr1	22927910	.	C	.	.	LowGQX	END=22927912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927913	.	C	.	.	LowGQX	.	GT	./.
chr1	22927914	.	T	.	.	LowGQX	END=22927915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927916	.	C	.	.	LowGQX	.	GT	./.
chr1	22927917	.	G	.	.	LowGQX	END=22927920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927921	.	C	.	.	LowGQX	.	GT	./.
chr1	22927922	.	G	.	.	LowGQX	END=22927923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927924	.	G	.	.	LowGQX	END=22927925	GT	./.
chr1	22927926	.	G	.	.	LowGQX	END=22927930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927931	.	C	.	.	LowGQX	.	GT	./.
chr1	22927932	.	T	.	.	LowGQX	END=22927933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927934	.	C	.	.	LowGQX	.	GT	./.
chr1	22927935	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22927936	.	C	.	.	LowGQX	END=22927990	GT	./.
chr1	22928077	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22928078	.	G	.	.	LowGQX	.	GT	./.
chr1	22928079	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22928080	.	C	.	.	LowGQX	.	GT	./.
chr1	22928081	.	T	.	.	LowGQX	END=22928085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22928086	.	G	.	.	LowGQX	.	GT	./.
chr1	22928087	.	G	.	.	LowGQX	END=22928092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22928093	.	C	.	.	LowGQX	.	GT	./.
chr1	22928094	.	T	.	.	LowGQX	END=22928097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22928098	.	C	.	.	LowGQX	.	GT	./.
chr1	22928099	.	A	.	.	LowGQX	END=22928109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22928110	.	T	.	.	LowGQX	END=22928111	GT	./.
chr1	22928112	.	C	.	.	LowGQX	END=22928113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22928114	.	T	.	.	LowGQX	.	GT	./.
chr1	22928115	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22928116	.	A	.	.	LowGQX	.	GT	./.
chr1	22928117	.	C	.	.	LowGQX	END=22928120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22928121	.	G	.	.	LowGQX	.	GT	./.
chr1	22928122	.	A	.	.	LowGQX	END=22928129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22928130	.	G	.	.	LowGQX	.	GT	./.
chr1	22928131	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22928132	.	C	.	.	LowGQX	END=22928214	GT	./.
chr1	22928215	.	G	.	.	LowGQX	END=22928227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22928228	.	C	.	.	LowGQX	.	GT	./.
chr1	22928229	.	C	.	.	LowGQX	END=22928270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22928271	.	A	.	.	LowGQX	.	GT	./.
chr1	22928272	.	C	.	.	LowGQX	END=22928273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22928274	.	C	.	.	LowGQX	.	GT	./.
chr1	22928275	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22928276	.	A	.	.	LowGQX	.	GT	./.
chr1	22928277	.	G	.	.	LowGQX	END=22928287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	22964059	.	G	.	.	PASS	END=22964076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	22964077	.	G	.	.	PASS	END=22964083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	22964084	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:36:60
chr1	22964085	.	C	.	.	PASS	END=22964089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	22964090	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:39:60
chr1	22964091	.	G	.	.	PASS	END=22964102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	22964103	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:65:60
chr1	22964104	.	G	.	.	PASS	END=22964116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	22964117	.	G	.	.	PASS	END=22964142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:84:60
chr1	22964143	.	G	.	.	PASS	END=22964255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	22964256	.	G	.	.	PASS	END=22964276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	22964277	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:74:60
chr1	22964278	.	C	.	.	PASS	END=22964299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	22964300	.	C	.	.	PASS	END=22964308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	22964309	.	T	.	.	PASS	END=22964316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	22964317	.	A	.	.	PASS	END=22964323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	22965275	.	G	.	.	PASS	END=22965291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	22965292	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:72:60
chr1	22965293	.	C	.	.	PASS	END=22965335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	22965336	.	C	.	.	PASS	END=22965356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	22965357	.	C	.	.	PASS	END=22965403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	22965404	.	A	.	.	PASS	END=22965417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	22965418	.	G	.	.	PASS	END=22965449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	22965450	.	C	.	.	PASS	END=22965481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr1	22965482	.	G	.	.	PASS	END=22965640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:305:99:60
chr1	22965641	.	A	.	.	PASS	END=22965692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr1	22965693	.	C	.	.	PASS	END=22965720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	22965721	.	C	.	.	PASS	END=22965742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	22965743	.	A	.	.	PASS	END=22965761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	22965762	.	G	.	.	PASS	END=22965775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	22965776	.	T	.	.	PASS	END=22965807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	22965808	.	T	.	.	PASS	END=22965818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	22965819	.	A	.	.	PASS	END=22965831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:80:60
chr1	22965832	.	G	.	.	PASS	END=22965835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	22965836	.	A	.	.	PASS	END=22965845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	22965846	.	G	.	.	PASS	END=22965849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	22965850	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:48:60
chr1	22965851	.	C	.	.	PASS	END=22965864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	22965865	.	G	.	.	PASS	END=22965866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr1	22965867	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:33:60
chr1	22965868	.	T	.	.	PASS	END=22965869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	22965870	.	C	.	.	PASS	END=22965876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	22965877	.	T	.	.	PASS	END=22965878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:45:60
chr1	22965879	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:72:60
chr1	22965880	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:42:60
chr1	22965881	.	T	.	.	PASS	END=22965883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	22965884	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:54:60
chr1	22965885	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:75:60
chr1	22965886	.	T	.	.	PASS	END=22965887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr1	22965888	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:72:60
chr1	22965889	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:27:60
chr1	22965890	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:69:60
chr1	22965891	.	A	.	.	PASS	END=22965892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	22965893	.	C	.	.	PASS	END=22965897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	22965898	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:33:60
chr1	22965899	.	G	.	.	PASS	END=22965911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	22965912	.	A	.	.	PASS	END=22965917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	22965918	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	22965919	.	C	.	.	PASS	END=22965927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	22965928	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr1	22965929	.	C	.	.	PASS	END=22965930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	22965931	.	T	.	.	PASS	END=22965932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	22965933	.	T	.	.	PASS	END=22965935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	22965936	.	G	.	.	PASS	END=22965939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	22965940	.	T	.	.	PASS	END=22965941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	22965942	.	C	.	.	PASS	END=22965946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	22965947	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	22965948	.	C	.	.	PASS	END=22965952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	22965953	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	22965954	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	22965955	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	22965956	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	22965957	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	22965958	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	22965959	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr1	22965960	.	T	.	.	PASS	END=22965964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	22965965	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	22965966	.	C	.	.	PASS	END=22965975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	22965976	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:1:60
chr1	22965977	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	22965978	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	22965979	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	22965980	.	C	.	.	LowGQX	END=22965981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	22965982	.	G	.	.	PASS	END=22965991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	22965992	.	G	.	.	LowGQX	END=22965995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	22965996	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	22965997	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	22965998	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	22965999	.	G	.	.	LowGQX	END=22966000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	22966001	.	C	.	.	LowGQX	END=22966002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	22966003	.	C	.	.	LowGQX	END=22966006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	22970466	.	A	.	.	PASS	END=22970482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	22970483	.	G	.	.	PASS	END=22970498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:86:60
chr1	22970499	.	C	.	.	PASS	END=22970537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	22970538	.	C	.	.	PASS	END=22970596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	22970597	.	A	.	.	PASS	END=22970649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	22970650	.	C	.	.	PASS	END=22970683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	22970684	.	C	.	.	PASS	END=22970700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	22970701	.	A	.	.	PASS	END=22970711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	22970712	.	C	.	.	PASS	END=22970713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:69:60
chr1	22970714	.	G	.	.	PASS	END=22970715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	22970716	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr1	22970717	.	T	.	.	PASS	END=22970718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	22970719	.	G	.	.	PASS	END=22970723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	22970724	.	T	.	.	PASS	END=22970726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:54:60
chr1	22970727	.	G	.	.	PASS	END=22970729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	22970730	.	T	.	.	PASS	END=22970731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	22970732	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:57:60
chr1	22970733	.	G	.	.	PASS	END=22970736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr1	22970737	.	C	.	.	PASS	END=22970742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	22970743	.	T	.	.	PASS	END=22970745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	22970746	.	G	.	.	PASS	END=22970748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	22973669	.	T	.	.	PASS	END=22973679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	22973680	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:2:60
chr1	22973681	.	C	.	.	PASS	END=22973683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	22973684	.	A	.	14.85	LowGQX	DP=26;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:18:26:0.13:60:0
chr1	22973685	.	C	.	.	PASS	END=22973687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	22973688	.	T	.	.	PASS	END=22973690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	22973691	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:69:60
chr1	22973692	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:48:60
chr1	22973693	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:66:60
chr1	22973694	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:42:60
chr1	22973695	.	T	.	.	PASS	END=22973696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	22973697	.	C	.	.	PASS	END=22973705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	22973706	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:60:60
chr1	22973707	.	T	.	.	PASS	END=22973726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	22973727	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:22:60
chr1	22973728	.	G	.	.	PASS	END=22973739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	22973740	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:28:60
chr1	22973741	.	T	.	.	PASS	END=22973744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	22973745	.	A	.	.	PASS	END=22973746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	22973747	.	G	.	.	PASS	END=22973760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	22973761	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:66:60
chr1	22973762	.	A	.	.	PASS	END=22973767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	22973768	.	A	.	.	PASS	END=22973769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:54:60
chr1	22973770	.	C	.	.	PASS	END=22973778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	22973779	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:64:60
chr1	22973780	.	C	.	.	PASS	END=22973782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	22973783	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:71:60
chr1	22973784	.	C	.	.	PASS	END=22973785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	22973786	.	A	.	.	PASS	END=22973787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	22973788	.	C	.	.	PASS	END=22973812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	22973813	.	C	.	.	PASS	END=22973833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	22973834	.	C	.	.	PASS	END=22973848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	22973849	.	T	.	.	PASS	END=22973875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	22973876	.	G	.	.	PASS	END=22973901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	22973902	.	T	.	.	PASS	END=22973929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	22973930	.	C	.	.	PASS	END=22974065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	22974066	.	C	.	.	PASS	END=22974092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	22974093	.	C	.	.	PASS	END=22974121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	22974122	.	A	.	.	PASS	END=22974165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	22974166	.	A	.	.	PASS	END=22974188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	22974189	.	G	.	.	PASS	END=22974220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	22974221	.	T	.	.	PASS	END=22974240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr1	22974241	.	A	.	.	PASS	END=22974278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	22974279	.	C	.	.	PASS	END=22974291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	22974292	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:60:60
chr1	22974293	.	C	.	.	PASS	END=22974298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	22974299	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:48:60
chr1	22974300	.	C	.	.	PASS	END=22974307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	22974308	.	T	.	.	PASS	END=22974318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	22974319	.	T	.	.	PASS	END=22974327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	22985899	.	A	.	.	PASS	END=22985911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	22985912	.	C	.	.	PASS	END=22985937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	22985938	.	G	.	.	PASS	END=22985948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	22985949	.	T	.	.	PASS	END=22985977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	22985978	.	T	.	.	PASS	END=22986027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	22986028	.	G	.	.	PASS	END=22986095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	22986096	.	C	.	.	PASS	END=22986125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	22986126	.	A	.	.	PASS	END=22986153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	22986154	.	A	.	.	PASS	END=22986169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	22986170	.	T	.	.	PASS	END=22986187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	22987254	.	C	.	.	PASS	END=22987273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	22987274	.	G	.	.	PASS	END=22987307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	22987308	.	T	.	.	PASS	END=22987345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	22987346	.	A	.	.	PASS	END=22987380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	22987381	.	A	.	.	PASS	END=22987402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	22987403	.	G	.	.	PASS	END=22987425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	22987426	.	C	.	.	PASS	END=22987477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr1	22987478	.	A	.	.	PASS	END=22987617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:60
chr1	22987618	.	C	.	.	PASS	END=22987636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	22987637	.	G	.	.	PASS	END=22987674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	22987675	.	T	.	.	PASS	END=22987691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	22987692	.	A	.	.	PASS	END=22987714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	22987715	.	T	.	.	PASS	END=22987726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	22987727	.	A	.	.	PASS	END=22987743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	22987744	.	C	.	.	PASS	END=22987762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:93:60
chr1	22987763	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:78:60
chr1	22987764	.	T	.	.	PASS	END=22987765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	22987766	.	G	.	.	PASS	END=22987781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	22987782	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:45:60
chr1	22987783	.	C	.	.	PASS	END=22987793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr1	22987794	.	C	.	.	PASS	END=22987805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	22987806	.	A	.	.	PASS	END=22987819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	22987820	.	A	.	.	PASS	END=22987827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	22987828	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr1	22987829	.	G	.	.	PASS	END=22987838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	22987839	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	22987840	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	22987841	.	T	.	.	LowGQX	END=22987842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	22987843	.	T	.	.	PASS	END=22987845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	22987846	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	22987847	.	G	.	.	PASS	END=22987849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	22987850	.	T	.	54.07	LowGQX	DP=10;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:24.08:60:24
chr1	22987851	.	T	.	.	LowGQX	END=22987854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	22987855	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	22987856	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	22987857	.	T	.	51.05	LowGQX	DP=10;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:21.06:60:21
chr1	22987858	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	22987859	.	T	.	.	LowGQX	END=22987873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	22987874	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	22987875	.	C	.	.	LowGQX	END=22987879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	22987880	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	22987881	.	C	.	.	LowGQX	END=22987882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	22987883	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	22987884	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:60
chr1	22987885	.	G	.	.	LowGQX	END=22987886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	22987887	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	22987888	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	22987889	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	22987890	.	G	.	.	LowGQX	END=22987891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	22987892	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	22987893	.	T	.	.	LowGQX	END=22987896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	22987897	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	22987898	.	T	.	.	LowGQX	END=22987900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	22987901	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	22987902	.	C	.	.	LowGQX	END=22987903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	22987904	.	C	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	22987905	.	C	.	.	LowGQX	END=22987906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	22987907	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	22987908	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr1	22987909	.	T	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	22987910	.	C	.	.	LowGQX	END=22987914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	22987915	.	T	.	.	LowGQX	END=22987916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	22987917	.	C	.	.	LowGQX	END=22987930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	23037396	.	C	.	.	LowGQX	END=23037555	GT	./.
chr1	23101666	.	A	.	.	LowGQX	END=23101765	GT	./.
chr1	23107863	.	G	.	.	PASS	END=23107864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:51:60
chr1	23107865	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:69:60
chr1	23107866	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:48:60
chr1	23107867	.	G	.	.	PASS	END=23107872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	23107873	.	G	.	.	PASS	END=23107878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:75:60
chr1	23107879	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:63:60
chr1	23107880	.	G	.	.	PASS	END=23107883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	23107884	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:63:60
chr1	23107885	.	G	.	.	PASS	END=23107888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	23107889	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:63:60
chr1	23107890	.	G	.	.	PASS	END=23107891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	23107892	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:63:60
chr1	23107893	.	G	.	.	PASS	END=23107928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr1	23107929	.	C	.	.	PASS	END=23107990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	23107991	.	T	.	.	PASS	END=23108010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:90:60
chr1	23108011	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:55:60
chr1	23108012	.	C	.	.	PASS	END=23108024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	23108025	.	A	.	.	PASS	END=23108029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:72:60
chr1	23110834	.	G	.	.	LowGQX	END=23110845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	23110846	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	23110847	.	G	.	.	LowGQX	END=23110860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	23110861	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:9:60
chr1	23110862	.	C	.	.	LowGQX	END=23110878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	23110879	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr1	23110880	.	C	.	.	LowGQX	END=23110881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	23110882	.	C	.	.	PASS	END=23110903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	23110904	.	A	.	.	PASS	END=23110913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	23110914	.	C	.	.	PASS	END=23110923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	23110924	.	A	.	.	PASS	END=23110929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	23110930	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:42:60
chr1	23110931	.	C	.	.	PASS	END=23110938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	23110939	.	G	.	.	PASS	END=23110945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	23110946	.	A	.	.	PASS	END=23110947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	23110948	.	G	.	.	PASS	END=23110964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	23110965	.	G	.	.	PASS	END=23110966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	23110967	.	A	.	.	PASS	END=23110970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	23110971	.	C	.	.	PASS	END=23110975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:84:60
chr1	23110976	.	T	.	.	PASS	END=23110980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	23110981	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:41:60
chr1	23110982	.	C	.	.	PASS	END=23111006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	23111007	.	C	.	.	PASS	END=23111011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	23111012	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:64:60
chr1	23111013	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:99:60
chr1	23111014	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:72:60
chr1	23111015	.	T	.	.	PASS	END=23111048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	23111049	.	C	.	.	PASS	END=23111085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:82:60
chr1	23111086	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:66:60
chr1	23111087	.	C	.	.	PASS	END=23111096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	23111097	.	C	.	.	PASS	END=23111247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	23111248	.	C	.	.	PASS	END=23111307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	23111308	.	T	.	.	PASS	END=23111328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	23111329	.	C	.	.	PASS	END=23111355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	23111356	.	A	.	.	PASS	END=23111385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	23111386	.	A	.	.	PASS	END=23111432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	23111433	.	C	.	.	PASS	END=23111531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr1	23111532	.	A	.	.	PASS	END=23111577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	23111578	.	C	.	.	PASS	END=23111589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	23111590	.	C	.	.	PASS	END=23111613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	23111614	.	T	.	.	PASS	END=23111620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	23189479	.	C	.	.	PASS	END=23189493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	23189494	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:42:60
chr1	23189495	.	A	.	.	PASS	END=23189499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	23189500	.	C	.	.	PASS	END=23189522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	23189523	.	C	.	.	PASS	END=23189548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:90:60
chr1	23189549	.	C	.	.	PASS	END=23189644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	23189645	.	C	.	.	PASS	END=23189663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	23189664	.	C	.	.	PASS	END=23189698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:84:60
chr1	23189699	.	C	.	.	PASS	END=23189719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	23189720	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:51:60
chr1	23189721	.	C	.	.	PASS	END=23189725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:87:60
chr1	23189726	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:54:60
chr1	23189727	.	C	.	.	PASS	END=23189736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	23191319	.	G	.	.	PASS	END=23191331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:89:59
chr1	23191332	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:42:59
chr1	23191333	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:99:59
chr1	23191334	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:33:59
chr1	23191335	.	G	.	.	PASS	END=23191341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:78:58
chr1	23191342	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:45:58
chr1	23191343	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:87:58
chr1	23191344	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:63:58
chr1	23191345	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:99:59
chr1	23191346	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:59
chr1	23191347	.	C	.	.	PASS	END=23191352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:59
chr1	23191353	.	C	.	.	PASS	END=23191361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:59
chr1	23191362	.	C	.	.	PASS	END=23191370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:59
chr1	23191371	.	C	.	.	PASS	END=23191389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	23191390	.	G	.	.	PASS	END=23191397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	23191398	.	T	.	.	PASS	END=23191408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	23191409	.	A	.	.	PASS	END=23191456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr1	23191457	.	G	.	.	PASS	END=23191550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:287:99:60
chr1	23191551	.	A	.	.	PASS	END=23191684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	23191685	.	A	.	.	PASS	END=23191710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	23191711	.	T	.	.	PASS	END=23191742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	23191743	.	C	.	.	PASS	END=23191745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	23191746	.	G	T	1341.07	PASS	BaseQRankSum=0.440;DP=111;Dels=0.00;FS=3.033;HRun=0;HaplotypeScore=19.1988;MQ=60;MQ0=0;MQRankSum=0.044;QD=12.08;ReadPosRankSum=0.115;SB=-420.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:57,54:111:99:1371,0,1515:60:99:0.486
chr1	23191747	.	C	.	.	PASS	END=23191756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	23208801	.	G	.	.	PASS	END=23208854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	23208855	.	C	.	.	PASS	END=23208898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	23208899	.	A	.	.	PASS	END=23208917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:94:60
chr1	23208918	.	C	.	.	PASS	END=23208931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	23208932	.	C	.	.	PASS	END=23208952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr1	23208953	.	T	.	.	PASS	END=23208974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	23208975	.	A	.	.	PASS	END=23208979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	23208980	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:30:60
chr1	23208981	.	C	.	.	PASS	END=23209004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	23209005	.	C	.	.	PASS	END=23209014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	23209015	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:9:60
chr1	23209016	.	C	.	.	PASS	END=23209027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	23217582	.	A	.	.	LowGQX	END=23217681	GT	./.
chr1	23219263	.	C	.	.	PASS	END=23219272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	23219273	.	T	.	.	PASS	END=23219288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	23219289	.	C	.	.	PASS	END=23219294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	23219295	.	C	.	.	PASS	END=23219313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	23219314	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:37:60
chr1	23219315	.	A	.	.	PASS	END=23219328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	23219329	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:69:60
chr1	23219330	.	C	.	.	PASS	END=23219331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	23219332	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:67:60
chr1	23219333	.	T	.	.	PASS	END=23219381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	23219382	.	C	.	.	PASS	END=23219404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	23219405	.	T	.	.	PASS	END=23219472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	23219473	.	C	.	.	PASS	END=23219492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	23219493	.	T	C	1852.95	PASS	DP=63;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.6178;MQ=60;MQ0=0;QD=29.41;SB=-811.48	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,63:63:99:1886,141,0:60:99:1.000
chr1	23219494	.	T	.	.	PASS	END=23219528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	23219529	.	C	.	.	PASS	END=23219537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	23219538	.	A	.	.	PASS	END=23219547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	23219548	.	A	.	.	PASS	END=23219555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	23219556	.	G	.	.	PASS	END=23219568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	23219569	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:6:60
chr1	23219570	.	C	.	.	PASS	END=23219577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	23219578	.	C	.	.	PASS	END=23219585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	23219586	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	23219587	.	G	.	.	LowGQX	END=23219588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	23219589	.	A	.	.	PASS	END=23219590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	23221914	.	T	.	.	PASS	END=23221927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	23221928	.	G	.	.	PASS	END=23221958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	23221959	.	C	.	.	PASS	END=23222071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	23222072	.	A	.	.	PASS	END=23222103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	23222104	.	T	.	.	PASS	END=23222124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	23222853	.	C	.	.	PASS	END=23222912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	23222913	.	G	.	.	PASS	END=23222960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	23222961	.	C	.	.	PASS	END=23222979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	23222980	.	A	.	.	PASS	END=23223006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	23223007	.	C	.	.	PASS	END=23223008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:39:60
chr1	23223009	.	C	.	.	PASS	END=23223018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	23223019	.	G	.	.	PASS	END=23223022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:51:60
chr1	23232429	.	T	.	.	PASS	END=23232481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	23232482	.	A	.	.	PASS	END=23232532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	23232533	.	G	.	.	PASS	END=23232571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	23232572	.	T	.	.	PASS	END=23232601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	23232602	.	G	.	.	PASS	END=23232622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	23232623	.	C	.	.	PASS	END=23232631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	23232632	.	T	.	.	PASS	END=23232642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	23232643	.	A	.	.	PASS	END=23232650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	23232651	.	T	.	.	PASS	END=23232652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	23232653	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:75:60
chr1	23233152	.	C	.	.	PASS	END=23233181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	23233182	.	G	.	.	PASS	END=23233215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	23233216	.	G	.	.	PASS	END=23233251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	23233252	.	A	.	.	PASS	END=23233366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	23233367	.	C	.	.	PASS	END=23233405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	23233406	.	A	.	.	PASS	END=23233432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	23233433	.	C	.	.	PASS	END=23233448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	23233449	.	G	.	.	PASS	END=23233495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	23233496	.	A	.	.	PASS	END=23233501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	23234395	.	T	.	.	PASS	END=23234420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	23234421	.	T	.	.	PASS	END=23234428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	23234429	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:56:60
chr1	23234430	.	C	.	.	PASS	END=23234450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	23234451	.	C	.	.	PASS	END=23234475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	23234476	.	C	.	.	PASS	END=23234503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	23234504	.	C	.	.	PASS	END=23234601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	23234602	.	T	.	.	PASS	END=23234633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	23234634	.	C	.	.	PASS	END=23234641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	23234642	.	C	.	.	PASS	END=23234654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	23234655	.	T	.	.	PASS	END=23234664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	23234665	.	A	.	.	PASS	END=23234670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	23234671	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:13:60
chr1	23234672	.	G	.	.	PASS	END=23234684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	23234685	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:2:60
chr1	23234686	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:36:60
chr1	23234687	.	A	.	.	LowGQX	END=23234688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	23234689	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	23234690	.	C	.	.	LowGQX	END=23234693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	23234694	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	23234695	.	A	.	.	LowGQX	END=23234702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	23234703	.	A	.	.	LowGQX	END=23234704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	23234705	.	G	.	.	LowGQX	END=23234712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	23235464	.	G	.	.	PASS	END=23235497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	23235498	.	C	.	.	PASS	END=23235686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:280:99:60
chr1	23235687	.	A	.	.	PASS	END=23235715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:252:99:60
chr1	23236824	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	23236825	.	A	.	12.19	LowGQX	DP=12;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:9:12:0.07:60:0
chr1	23236826	.	C	T	130.29	SB	BaseQRankSum=0.000;DP=12;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=8.6273;MQ=60;MQ0=0;MQRankSum=1.378;QD=10.86;ReadPosRankSum=0.779;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:6,6:12:99:160,0,193:60:99:0.500
chr1	23236827	.	G	.	.	PASS	END=23236828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	23236829	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	23236830	.	C	.	.	PASS	END=23236831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	23236832	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:1:60
chr1	23236833	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	23236834	.	G	.	.	PASS	END=23236841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	23236842	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	23236843	.	C	.	.	PASS	END=23236844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	23236845	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	23236846	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:45:60
chr1	23236847	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr1	23236848	.	C	.	.	PASS	END=23236854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	23236855	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	23236856	.	C	.	.	PASS	END=23236857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	23236858	.	C	.	.	PASS	END=23236867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	23236868	.	G	.	.	PASS	END=23236895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	23236896	.	G	.	.	PASS	END=23236909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	23236910	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:74:60
chr1	23236911	.	C	.	.	PASS	END=23236913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	23236914	.	C	.	.	PASS	END=23236936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	23236937	.	G	.	.	PASS	END=23236953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	23236954	.	A	.	.	PASS	END=23237064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	23237065	.	C	.	.	PASS	END=23237082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	23237083	.	T	.	.	PASS	END=23237095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	23237096	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:73:60
chr1	23237097	.	C	.	.	PASS	END=23237109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	23237110	.	C	.	.	PASS	END=23237119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	23238886	.	T	.	.	PASS	END=23238925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	23238926	.	C	.	.	PASS	END=23238964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	23238965	.	A	.	.	PASS	END=23239086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	23239087	.	G	.	.	PASS	END=23239119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	23239120	.	A	.	.	PASS	END=23239144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	23239904	.	A	.	.	PASS	END=23239912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	23239913	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:63:60
chr1	23239914	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:18:60
chr1	23239915	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:45:60
chr1	23239916	.	C	.	.	PASS	END=23239920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	23239921	.	A	.	.	PASS	END=23239930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	23239931	.	A	.	.	PASS	END=23239968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	23239969	.	T	.	.	PASS	END=23239988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:75:60
chr1	23239989	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:45:60
chr1	23239990	.	A	.	.	PASS	END=23240003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:75:60
chr1	23240004	.	C	.	.	PASS	END=23240034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	23240035	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:72:60
chr1	23240036	.	G	.	.	PASS	END=23240090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	23240091	.	C	.	.	PASS	END=23240114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	23240150	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:42:60
chr1	23240151	.	G	.	.	PASS	END=23240154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	23240155	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:60
chr1	23240156	.	G	.	.	PASS	END=23240158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	23240159	.	A	.	.	LowGQX	END=23240160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	23240161	.	T	.	57.07	LowGQX	DP=13;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:10:13:27.07:60:27
chr1	23240162	.	C	.	.	LowGQX	END=23240172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	23240173	.	C	.	.	LowGQX	END=23240174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	23240175	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr1	23240176	.	G	.	.	LowGQX	END=23240186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	23240187	.	A	.	.	LowGQX	END=23240193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	23240194	.	A	.	.	LowGQX	END=23240195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	23240196	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	23240197	.	G	.	.	LowGQX	END=23240211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	23240212	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	23240213	.	C	.	.	LowGQX	END=23240229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	23240230	.	G	.	.	LowGQX	.	GT	./.
chr1	23240231	.	C	.	.	LowGQX	END=23240250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	23240251	.	A	.	.	LowGQX	END=23240345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	23240346	.	T	.	.	LowGQX	END=23240363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23280238	.	C	.	.	LowGQX	END=23280517	GT	./.
chr1	23281813	.	C	.	.	LowGQX	END=23281919	GT	./.
chr1	23285177	.	C	.	.	LowGQX	END=23285195	GT	./.
chr1	23285196	.	T	.	.	LowGQX	END=23285413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23286434	.	C	.	.	LowGQX	END=23286592	GT	./.
chr1	23289599	.	C	.	.	LowGQX	END=23289757	GT	./.
chr1	23291680	.	T	.	.	LowGQX	END=23291839	GT	./.
chr1	23337393	.	A	.	.	LowGQX	END=23337693	GT	./.
chr1	23340375	.	C	.	.	LowGQX	END=23340538	GT	./.
chr1	23342216	.	A	.	.	LowGQX	END=23342282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	23342283	.	T	.	.	LowGQX	.	GT	./.
chr1	23342284	.	C	.	.	LowGQX	END=23342315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	23346077	.	C	.	.	LowGQX	END=23346446	GT	./.
chr1	23356960	.	A	.	.	LowGQX	END=23357129	GT	./.
chr1	23370840	.	C	.	.	LowGQX	END=23370999	GT	./.
chr1	23376878	.	A	.	.	LowGQX	END=23377015	GT	./.
chr1	23380244	.	T	.	.	LowGQX	END=23380343	GT	./.
chr1	23381559	.	T	.	.	LowGQX	END=23381658	GT	./.
chr1	23382423	.	A	.	.	LowGQX	END=23382442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23382443	.	T	.	.	LowGQX	END=23382533	GT	./.
chr1	23383968	.	C	.	.	LowGQX	END=23384067	GT	./.
chr1	23385564	.	A	.	.	LowGQX	END=23385663	GT	./.
chr1	23385796	.	A	.	.	LowGQX	END=23385895	GT	./.
chr1	23392509	.	T	.	.	LowGQX	END=23392608	GT	./.
chr1	23395030	.	A	.	.	LowGQX	END=23395176	GT	./.
chr1	23395550	.	T	.	.	LowGQX	END=23395594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23395595	.	G	.	.	LowGQX	.	GT	./.
chr1	23395596	.	G	.	.	LowGQX	END=23395619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23395620	.	A	.	.	LowGQX	.	GT	./.
chr1	23395621	.	G	.	.	LowGQX	END=23395630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23395631	.	A	.	.	LowGQX	.	GT	./.
chr1	23395632	.	A	.	.	LowGQX	END=23395645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23395646	.	T	.	.	LowGQX	.	GT	./.
chr1	23395647	.	G	.	.	LowGQX	END=23395648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23395649	.	A	.	.	LowGQX	.	GT	./.
chr1	23397716	.	A	.	.	LowGQX	END=23397771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23397772	.	T	.	.	LowGQX	.	GT	./.
chr1	23397773	.	C	.	.	LowGQX	END=23397784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23397785	.	C	.	.	LowGQX	END=23397854	GT	./.
chr1	23398604	.	T	.	.	LowGQX	END=23398703	GT	./.
chr1	23399783	.	A	.	.	LowGQX	END=23399898	GT	./.
chr1	23403719	.	A	.	.	LowGQX	END=23403855	GT	./.
chr1	23405481	.	A	.	.	LowGQX	END=23405672	GT	./.
chr1	23406044	.	A	.	.	LowGQX	END=23406162	GT	./.
chr1	23407937	.	A	.	.	LowGQX	END=23408068	GT	./.
chr1	23408711	.	A	.	.	LowGQX	END=23408861	GT	./.
chr1	23409670	.	A	.	.	LowGQX	END=23409859	GT	./.
chr1	23415386	.	G	.	.	LowGQX	END=23415548	GT	./.
chr1	23417337	.	C	.	.	LowGQX	END=23417436	GT	./.
chr1	23417681	.	A	.	.	LowGQX	END=23418111	GT	./.
chr1	23418112	.	G	.	.	LowGQX	END=23418123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23418124	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	23418125	.	C	.	.	LowGQX	END=23418275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23418276	.	C	.	.	LowGQX	END=23420681	GT	./.
chr1	23420682	.	G	.	.	LowGQX	END=23420756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	23519577	.	G	.	.	LowGQX	END=23520714	GT	./.
chr1	23636945	.	G	.	.	LowGQX	END=23637561	GT	./.
chr1	23637692	.	A	.	.	LowGQX	END=23637817	GT	./.
chr1	23640044	.	A	.	.	LowGQX	END=23640243	GT	./.
chr1	23644974	.	A	.	.	LowGQX	END=23645190	GT	./.
chr1	23648019	.	A	.	.	LowGQX	END=23648158	GT	./.
chr1	23650047	.	A	.	.	LowGQX	END=23650246	GT	./.
chr1	23660009	.	A	.	.	LowGQX	END=23660126	GT	./.
chr1	23664245	.	A	.	.	LowGQX	END=23664246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23664247	.	C	.	.	LowGQX	.	GT	./.
chr1	23664248	.	T	.	.	LowGQX	END=23664264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23664265	.	A	.	.	LowGQX	.	GT	./.
chr1	23664266	.	G	.	.	LowGQX	END=23664267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23664268	.	T	.	.	LowGQX	.	GT	./.
chr1	23664269	.	C	.	.	LowGQX	END=23664276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23664277	.	G	.	.	LowGQX	END=23664278	GT	./.
chr1	23664279	.	A	.	.	LowGQX	END=23664280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23664281	.	T	.	.	LowGQX	.	GT	./.
chr1	23664282	.	C	.	.	LowGQX	END=23664286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23664287	.	A	.	.	LowGQX	.	GT	./.
chr1	23664288	.	C	.	.	LowGQX	END=23664294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23664295	.	C	.	.	LowGQX	.	GT	./.
chr1	23664296	.	C	.	.	LowGQX	END=23664317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23664318	.	A	.	.	LowGQX	.	GT	./.
chr1	23664319	.	G	.	.	LowGQX	END=23664320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23664321	.	T	.	.	LowGQX	END=23664356	GT	./.
chr1	23664981	.	A	.	.	LowGQX	END=23665103	GT	./.
chr1	23667343	.	A	.	.	LowGQX	END=23667503	GT	./.
chr1	23688460	.	G	.	.	LowGQX	END=23688528	GT	./.
chr1	23688529	.	G	.	.	LowGQX	END=23688550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688551	.	C	.	.	LowGQX	.	GT	./.
chr1	23688552	.	C	.	.	LowGQX	END=23688558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688559	.	A	.	.	LowGQX	.	GT	./.
chr1	23688560	.	C	.	.	LowGQX	END=23688563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688564	.	T	.	.	LowGQX	.	GT	./.
chr1	23688565	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688566	.	G	.	.	LowGQX	.	GT	./.
chr1	23688567	.	A	.	.	LowGQX	END=23688568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688569	.	G	.	.	LowGQX	.	GT	./.
chr1	23688570	.	T	.	.	LowGQX	END=23688578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688579	.	G	.	.	LowGQX	.	GT	./.
chr1	23688580	.	T	.	.	LowGQX	END=23688581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688582	.	G	.	.	LowGQX	.	GT	./.
chr1	23688583	.	G	.	.	LowGQX	END=23688584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688585	.	G	.	.	LowGQX	.	GT	./.
chr1	23688586	.	C	.	.	LowGQX	END=23688591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688592	.	G	.	.	LowGQX	.	GT	./.
chr1	23688593	.	T	.	.	LowGQX	END=23688596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688597	.	A	.	.	LowGQX	.	GT	./.
chr1	23688598	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688599	.	C	.	.	LowGQX	END=23688600	GT	./.
chr1	23688601	.	T	.	.	LowGQX	END=23688604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688605	.	C	.	.	LowGQX	.	GT	./.
chr1	23688606	.	A	.	.	LowGQX	END=23688607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688608	.	A	.	.	LowGQX	.	GT	./.
chr1	23688609	.	C	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	23688610	.	T	.	.	LowGQX	END=23688616	GT	./.
chr1	23688617	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688618	.	C	.	.	LowGQX	.	GT	./.
chr1	23688619	.	T	.	.	LowGQX	END=23688620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688621	.	G	.	.	LowGQX	.	GT	./.
chr1	23688622	.	T	.	.	LowGQX	END=23688623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688624	.	G	.	.	LowGQX	.	GT	./.
chr1	23688625	.	G	.	.	LowGQX	END=23688627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688628	.	T	.	.	LowGQX	.	GT	./.
chr1	23688629	.	T	.	.	LowGQX	END=23688632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688633	.	C	.	.	LowGQX	.	GT	./.
chr1	23688634	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688635	.	C	.	.	LowGQX	END=23688696	GT	./.
chr1	23688697	.	T	.	.	LowGQX	END=23688701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688702	.	C	.	.	LowGQX	.	GT	./.
chr1	23688703	.	T	.	.	LowGQX	END=23688710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688711	.	C	.	.	LowGQX	.	GT	./.
chr1	23688712	.	T	.	.	LowGQX	END=23688731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688732	.	C	.	.	LowGQX	.	GT	./.
chr1	23688733	.	T	.	.	LowGQX	END=23688734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688735	.	G	.	.	LowGQX	.	GT	./.
chr1	23688736	.	T	.	.	LowGQX	END=23688745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688746	.	G	.	.	LowGQX	END=23688747	GT	./.
chr1	23688748	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688749	.	G	.	.	LowGQX	END=23688750	GT	./.
chr1	23688751	.	G	.	.	LowGQX	END=23688753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688754	.	C	.	.	LowGQX	.	GT	./.
chr1	23688755	.	T	.	.	LowGQX	END=23688756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688757	.	C	.	.	LowGQX	.	GT	./.
chr1	23688758	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688759	.	G	.	.	LowGQX	.	GT	./.
chr1	23688760	.	C	.	.	LowGQX	END=23688770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688771	.	C	.	.	LowGQX	END=23688773	GT	./.
chr1	23688774	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688775	.	C	.	.	LowGQX	.	GT	./.
chr1	23688776	.	A	.	.	LowGQX	END=23688783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688784	.	C	.	.	LowGQX	.	GT	./.
chr1	23688785	.	A	.	.	LowGQX	END=23688896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23688897	.	T	.	.	LowGQX	END=23689121	GT	./.
chr1	23689122	.	C	.	.	LowGQX	END=23689175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23689176	.	A	.	.	LowGQX	.	GT	./.
chr1	23689177	.	C	.	.	LowGQX	END=23689396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23689397	.	G	.	.	LowGQX	END=23689716	GT	./.
chr1	23693533	.	A	.	.	LowGQX	END=23693663	GT	./.
chr1	23694433	.	G	.	.	LowGQX	END=23694532	GT	./.
chr1	23695789	.	G	.	.	LowGQX	END=23695916	GT	./.
chr1	23695917	.	C	.	.	LowGQX	END=23695947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23695948	.	C	.	.	LowGQX	.	GT	./.
chr1	23695949	.	T	.	.	LowGQX	END=23695955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23695956	.	C	.	.	LowGQX	.	GT	./.
chr1	23695957	.	A	.	.	LowGQX	END=23695998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23695999	.	A	.	.	LowGQX	.	GT	./.
chr1	23696000	.	C	.	.	LowGQX	END=23696017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23696018	.	A	.	.	LowGQX	.	GT	./.
chr1	23696019	.	T	.	.	LowGQX	END=23696035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23696036	.	G	.	.	LowGQX	END=23696037	GT	./.
chr1	23696038	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23696039	.	G	.	.	LowGQX	END=23696042	GT	./.
chr1	23696043	.	A	.	.	LowGQX	END=23696046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23696047	.	A	.	.	LowGQX	.	GT	./.
chr1	23696048	.	T	.	.	LowGQX	END=23696062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23696063	.	A	.	.	LowGQX	.	GT	./.
chr1	23696064	.	A	.	.	LowGQX	END=23696066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23696067	.	A	.	.	LowGQX	END=23696100	GT	./.
chr1	23696101	.	C	.	.	LowGQX	END=23696113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23696114	.	G	.	.	LowGQX	.	GT	./.
chr1	23696115	.	G	.	.	LowGQX	END=23696122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23696123	.	G	.	.	LowGQX	.	GT	./.
chr1	23696124	.	C	.	.	LowGQX	END=23696136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23696137	.	C	.	.	LowGQX	.	GT	./.
chr1	23696138	.	C	.	.	LowGQX	END=23696150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23696151	.	C	.	.	LowGQX	.	GT	./.
chr1	23696152	.	G	.	.	LowGQX	END=23696173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23697619	.	T	.	.	LowGQX	END=23697718	GT	./.
chr1	23697933	.	T	.	.	LowGQX	END=23698060	GT	./.
chr1	23707913	.	G	.	.	LowGQX	END=23708012	GT	./.
chr1	23710782	.	T	.	.	LowGQX	END=23710910	GT	./.
chr1	23713765	.	C	.	.	LowGQX	END=23713896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	23713897	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	23713898	.	A	.	.	LowGQX	END=23713912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23720371	.	C	.	.	LowGQX	END=23720488	GT	./.
chr1	23720489	.	G	.	.	LowGQX	END=23720526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23724015	.	G	.	.	LowGQX	END=23724114	GT	./.
chr1	23724254	.	C	.	.	LowGQX	END=23724493	GT	./.
chr1	23730593	.	G	.	.	LowGQX	END=23730692	GT	./.
chr1	23735138	.	A	.	.	LowGQX	END=23735148	GT	./.
chr1	23735149	.	T	.	.	LowGQX	END=23735160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23735161	.	C	.	.	LowGQX	.	GT	./.
chr1	23735162	.	C	.	.	LowGQX	END=23735182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23735183	.	G	.	.	LowGQX	.	GT	./.
chr1	23735184	.	G	.	.	LowGQX	END=23735197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23735198	.	C	.	.	LowGQX	.	GT	./.
chr1	23735199	.	T	.	.	LowGQX	END=23735205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23735206	.	C	.	.	LowGQX	.	GT	./.
chr1	23735207	.	C	.	.	LowGQX	END=23735237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23743741	.	C	.	.	LowGQX	END=23743771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	23743772	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	23743773	.	G	.	.	LowGQX	END=23743774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	23743775	.	G	.	.	LowGQX	.	GT	./.
chr1	23743776	.	G	.	.	LowGQX	END=23743811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	23743812	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	23743813	.	A	.	.	LowGQX	END=23743815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	23743816	.	C	.	.	LowGQX	.	GT	./.
chr1	23743817	.	C	.	.	LowGQX	END=23743821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23743822	.	T	.	.	LowGQX	.	GT	./.
chr1	23743823	.	T	.	.	LowGQX	END=23743826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23743827	.	T	.	.	LowGQX	.	GT	./.
chr1	23743828	.	C	.	.	LowGQX	END=23743837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23743838	.	T	.	.	LowGQX	.	GT	./.
chr1	23743839	.	T	.	.	LowGQX	END=23743851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23743852	.	T	.	.	LowGQX	.	GT	./.
chr1	23743853	.	C	.	.	LowGQX	END=23743868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23743869	.	G	.	.	LowGQX	.	GT	./.
chr1	23743870	.	G	.	.	LowGQX	END=23743875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23743876	.	A	.	.	LowGQX	.	GT	./.
chr1	23743877	.	G	.	.	LowGQX	END=23743880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23743881	.	A	.	.	LowGQX	END=23743883	GT	./.
chr1	23744396	.	C	.	.	LowGQX	END=23744502	GT	./.
chr1	23745499	.	C	.	.	LowGQX	END=23745501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23745502	.	G	.	.	LowGQX	END=23745503	GT	./.
chr1	23745504	.	G	.	.	LowGQX	END=23745507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23745508	.	T	.	.	LowGQX	.	GT	./.
chr1	23745509	.	T	.	.	LowGQX	END=23745517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23745518	.	C	.	.	LowGQX	.	GT	./.
chr1	23745519	.	C	.	.	LowGQX	END=23745531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23745532	.	C	.	.	LowGQX	.	GT	./.
chr1	23745533	.	C	.	.	LowGQX	END=23745561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23745562	.	C	.	.	LowGQX	.	GT	./.
chr1	23745563	.	G	.	.	LowGQX	END=23745568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23745569	.	C	.	.	LowGQX	.	GT	./.
chr1	23745570	.	C	.	.	LowGQX	END=23745594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23745595	.	C	.	.	LowGQX	.	GT	./.
chr1	23745596	.	A	.	.	LowGQX	END=23745606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23745607	.	T	.	.	LowGQX	END=23745650	GT	./.
chr1	23750256	.	C	.	.	LowGQX	END=23750415	GT	./.
chr1	23751042	.	A	.	.	LowGQX	END=23751067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23751068	.	C	.	.	LowGQX	END=23751141	GT	./.
chr1	23756337	.	G	.	.	LowGQX	END=23756378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23756379	.	T	.	.	LowGQX	.	GT	./.
chr1	23756380	.	G	.	.	LowGQX	END=23756436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23757524	.	C	.	.	LowGQX	END=23757674	GT	./.
chr1	23758116	.	A	.	.	LowGQX	END=23758133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23758134	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	23758135	.	T	.	.	LowGQX	END=23758264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23758265	.	C	.	.	LowGQX	END=23758372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	23758373	.	C	.	.	LowGQX	END=23758461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23758462	.	T	.	.	LowGQX	END=23758475	GT	./.
chr1	23759558	.	A	.	.	LowGQX	END=23759767	GT	./.
chr1	23759855	.	C	.	.	LowGQX	END=23760027	GT	./.
chr1	23760103	.	C	.	.	LowGQX	END=23760202	GT	./.
chr1	23760745	.	A	.	.	LowGQX	END=23760864	GT	./.
chr1	23761019	.	C	.	.	LowGQX	END=23761118	GT	./.
chr1	23762305	.	G	.	.	LowGQX	END=23762312	GT	./.
chr1	23762313	.	G	.	.	LowGQX	END=23762315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762316	.	T	.	.	LowGQX	.	GT	./.
chr1	23762317	.	A	.	.	LowGQX	END=23762323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762324	.	G	.	.	LowGQX	.	GT	./.
chr1	23762325	.	C	.	.	LowGQX	END=23762326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762327	.	C	.	.	LowGQX	.	GT	./.
chr1	23762328	.	T	.	.	LowGQX	END=23762341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762342	.	A	.	.	LowGQX	END=23762343	GT	./.
chr1	23762344	.	C	.	.	LowGQX	END=23762362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762363	.	A	.	.	LowGQX	.	GT	./.
chr1	23762364	.	G	.	.	LowGQX	END=23762376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762377	.	G	.	.	LowGQX	END=23762378	GT	./.
chr1	23762379	.	C	.	.	LowGQX	END=23762383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762384	.	C	.	.	LowGQX	.	GT	./.
chr1	23762385	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762386	.	A	.	.	LowGQX	.	GT	./.
chr1	23762387	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762388	.	T	.	.	LowGQX	END=23762389	GT	./.
chr1	23762390	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762391	.	C	.	.	LowGQX	.	GT	./.
chr1	23762392	.	A	.	.	LowGQX	END=23762399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762400	.	C	.	.	LowGQX	.	GT	./.
chr1	23762401	.	C	.	.	LowGQX	END=23762402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762403	.	G	.	.	LowGQX	END=23762405	GT	./.
chr1	23762406	.	C	.	.	LowGQX	END=23762407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762408	.	G	.	.	LowGQX	.	GT	./.
chr1	23762409	.	A	.	.	LowGQX	END=23762411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762412	.	G	.	.	LowGQX	.	GT	./.
chr1	23762413	.	G	.	.	LowGQX	END=23762414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762415	.	G	.	.	LowGQX	END=23762417	GT	./.
chr1	23762418	.	C	.	.	LowGQX	END=23762419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762420	.	C	.	.	LowGQX	END=23762422	GT	./.
chr1	23762423	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762424	.	T	.	.	LowGQX	.	GT	./.
chr1	23762425	.	G	.	.	LowGQX	END=23762430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762431	.	G	.	.	LowGQX	END=23762432	GT	./.
chr1	23762433	.	C	.	.	LowGQX	END=23762455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	23762456	.	G	.	.	LowGQX	.	GT	./.
chr1	23762457	.	G	.	.	LowGQX	END=23762469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762470	.	T	.	.	LowGQX	.	GT	./.
chr1	23762471	.	G	.	.	LowGQX	END=23762475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762476	.	C	.	.	LowGQX	.	GT	./.
chr1	23762477	.	C	.	.	LowGQX	END=23762492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762493	.	T	.	.	LowGQX	.	GT	./.
chr1	23762494	.	G	.	.	LowGQX	END=23762500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762501	.	A	.	.	LowGQX	.	GT	./.
chr1	23762502	.	T	.	.	LowGQX	END=23762506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23762507	.	T	.	.	LowGQX	.	GT	./.
chr1	23762508	.	C	.	.	LowGQX	END=23762523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23763051	.	A	.	.	LowGQX	END=23763150	GT	./.
chr1	23763402	.	A	.	.	LowGQX	.	GT	./.
chr1	23763403	.	C	.	.	LowGQX	END=23763414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	23763415	.	A	.	.	LowGQX	.	GT	./.
chr1	23763416	.	G	.	.	LowGQX	END=23763422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	23763423	.	A	.	.	LowGQX	.	GT	./.
chr1	23763424	.	G	.	.	LowGQX	END=23763432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	23763433	.	A	.	.	LowGQX	.	GT	./.
chr1	23763434	.	G	.	.	LowGQX	END=23763435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	23763436	.	T	.	.	LowGQX	.	GT	./.
chr1	23763437	.	G	.	.	LowGQX	END=23763479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	23763480	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	23763481	.	C	.	.	LowGQX	END=23763489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	23763490	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	23763491	.	C	.	.	LowGQX	END=23763503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23763504	.	A	.	.	LowGQX	END=23763539	GT	./.
chr1	23763621	.	A	.	.	LowGQX	END=23763815	GT	./.
chr1	23763892	.	C	.	.	LowGQX	END=23763991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23765234	.	A	.	.	LowGQX	END=23765333	GT	./.
chr1	23765639	.	A	.	.	LowGQX	END=23765738	GT	./.
chr1	23767593	.	A	.	.	LowGQX	END=23767706	GT	./.
chr1	23767874	.	G	.	.	LowGQX	END=23767973	GT	./.
chr1	23768136	.	G	.	.	LowGQX	END=23768140	GT	./.
chr1	23768141	.	A	.	.	LowGQX	END=23768235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23768672	.	T	.	.	LowGQX	END=23768771	GT	./.
chr1	23768992	.	A	.	.	LowGQX	END=23769128	GT	./.
chr1	23777947	.	A	.	.	LowGQX	END=23778046	GT	./.
chr1	23779178	.	A	.	.	LowGQX	END=23779277	GT	./.
chr1	23782372	.	A	.	.	LowGQX	END=23782521	GT	./.
chr1	23782602	.	G	.	.	LowGQX	END=23782701	GT	./.
chr1	23810465	.	G	.	.	LowGQX	END=23810628	GT	./.
chr1	23836370	.	A	.	.	LowGQX	END=23836642	GT	./.
chr1	23842814	.	A	.	.	LowGQX	END=23843034	GT	./.
chr1	23845506	.	A	.	.	LowGQX	END=23845624	GT	./.
chr1	23847403	.	A	.	.	LowGQX	END=23847565	GT	./.
chr1	23848327	.	A	.	.	LowGQX	END=23848550	GT	./.
chr1	23850873	.	A	.	.	LowGQX	END=23850982	GT	./.
chr1	23857032	.	A	.	.	LowGQX	END=23857287	GT	./.
chr1	23885431	.	G	.	.	PASS	END=23885444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	23885445	.	G	.	.	PASS	END=23885497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	23885498	.	T	C	3695.12	PASS	DP=127;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=8.5727;MQ=60;MQ0=0;QD=29.10;SB=-1534.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,127:127:99:3695,280,0:60:99:1.000
chr1	23885499	.	G	.	.	PASS	END=23885530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	23885616	.	A	.	.	PASS	END=23885638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	23885639	.	A	.	.	PASS	END=23885668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	23885669	.	G	.	.	PASS	END=23885722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr1	23885723	.	G	.	.	PASS	END=23885787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:285:99:60
chr1	23885788	.	T	.	.	PASS	END=23885867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:290:99:60
chr1	23885868	.	A	.	.	PASS	END=23885911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr1	23885912	.	C	.	.	PASS	END=23885919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	23907985	.	G	.	.	LowGQX	END=23908168	GT	./.
chr1	23918972	.	T	.	.	LowGQX	END=23919302	GT	./.
chr1	23953215	.	C	.	.	LowGQX	END=23953225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23953226	.	G	.	.	LowGQX	.	GT	./.
chr1	23953227	.	G	.	.	LowGQX	END=23953232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23953233	.	C	.	.	LowGQX	END=23953235	GT	./.
chr1	23953236	.	T	.	.	LowGQX	END=23953249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23953250	.	G	.	.	LowGQX	.	GT	./.
chr1	23953251	.	G	.	.	LowGQX	END=23953260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23953261	.	C	.	.	LowGQX	END=23953262	GT	./.
chr1	23953263	.	T	.	.	LowGQX	END=23953270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23953271	.	G	.	.	LowGQX	.	GT	./.
chr1	23953272	.	C	.	.	LowGQX	END=23953282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23953283	.	C	.	.	LowGQX	END=23953818	GT	./.
chr1	23953819	.	C	.	.	LowGQX	END=23953989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23953990	.	A	.	.	LowGQX	END=23954019	GT	./.
chr1	23954020	.	G	.	.	LowGQX	END=23954027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	23954271	.	C	.	.	LowGQX	END=23954314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23954315	.	T	.	.	LowGQX	.	GT	./.
chr1	23954316	.	C	.	.	LowGQX	END=23954326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23954327	.	C	.	.	LowGQX	.	GT	./.
chr1	23954328	.	A	.	.	LowGQX	END=23954358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23954359	.	T	.	.	LowGQX	.	GT	./.
chr1	23954360	.	C	.	.	LowGQX	END=23954372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23954373	.	C	.	.	LowGQX	END=23954488	GT	./.
chr1	23954926	.	T	.	.	LowGQX	END=23955092	GT	./.
chr1	23955960	.	T	.	.	LowGQX	END=23955973	GT	./.
chr1	23955974	.	G	.	.	LowGQX	END=23956059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23965598	.	G	.	.	LowGQX	END=23965625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23965626	.	A	.	.	LowGQX	.	GT	./.
chr1	23965627	.	C	.	.	LowGQX	END=23965630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23965631	.	G	.	.	LowGQX	.	GT	./.
chr1	23965632	.	A	.	.	LowGQX	END=23965634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23965635	.	G	.	.	LowGQX	.	GT	./.
chr1	23965636	.	C	.	.	LowGQX	END=23965650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23965651	.	G	.	.	LowGQX	.	GT	./.
chr1	23965652	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23965653	.	G	.	.	LowGQX	END=23965696	GT	./.
chr1	23965697	.	T	.	.	LowGQX	END=23965700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23965701	.	G	.	.	LowGQX	.	GT	./.
chr1	23965702	.	T	.	.	LowGQX	END=23965704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23965705	.	A	.	.	LowGQX	.	GT	./.
chr1	23965706	.	T	.	.	LowGQX	END=23965716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23965717	.	T	.	.	LowGQX	.	GT	./.
chr1	23965718	.	T	.	.	LowGQX	END=23965741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	23966169	.	G	.	.	LowGQX	END=23966285	GT	./.
chr1	23966878	.	G	.	.	LowGQX	END=23967058	GT	./.
chr1	24018263	.	G	.	.	PASS	END=24018276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	24018277	.	C	G	1906.83	PASS	BaseQRankSum=1.435;DP=70;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=-1.138;QD=27.24;ReadPosRankSum=0.891;SB=-823.03	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,69:70:99:1940,147,0:60:99:0.986
chr1	24018278	.	G	.	.	PASS	END=24018376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	24019048	.	C	.	.	PASS	END=24019054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	24019055	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:66:60
chr1	24019056	.	C	.	.	PASS	END=24019066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	24019067	.	A	.	.	PASS	END=24019119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	24019120	.	A	.	.	PASS	END=24019185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	24019186	.	A	.	.	PASS	END=24019209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	24019210	.	T	.	.	PASS	END=24019226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	24019227	.	G	.	.	PASS	END=24019231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	24019232	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:60
chr1	24019233	.	C	.	.	PASS	END=24019248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	24019249	.	G	.	.	PASS	END=24019265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	24019266	.	A	.	.	PASS	END=24019273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	24019274	.	G	.	.	PASS	END=24019290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	24019291	.	C	.	.	PASS	END=24019300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	24020246	.	G	.	.	PASS	END=24020265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	24020266	.	C	.	.	PASS	END=24020296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	24020297	.	C	.	.	PASS	END=24020367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	24020368	.	G	.	.	PASS	END=24020404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	24020405	.	T	.	.	PASS	END=24020424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:95:60
chr1	24020425	.	A	.	.	PASS	END=24020437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	24020438	.	A	.	.	PASS	END=24020444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	24020445	.	C	.	.	PASS	END=24020450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	24020451	.	T	.	.	PASS	END=24020454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	24021099	.	G	.	.	PASS	END=24021129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	24021130	.	T	.	.	PASS	END=24021178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	24021179	.	C	.	.	PASS	END=24021242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	24021243	.	G	.	.	PASS	END=24021265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	24021266	.	C	.	.	PASS	END=24021282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	24021283	.	T	.	.	PASS	END=24021314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	24021315	.	T	.	.	PASS	END=24021328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	24021329	.	A	.	.	PASS	END=24021332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	24022237	.	C	.	.	PASS	END=24022241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	24022242	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:12:60
chr1	24022243	.	T	.	.	PASS	END=24022264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr1	24022265	.	A	.	.	PASS	END=24022276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr1	24022277	.	T	.	.	PASS	END=24022287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	24022288	.	G	.	.	PASS	END=24022301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	24022302	.	A	.	.	PASS	END=24022348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	24022349	.	C	.	.	PASS	END=24022357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:65:60
chr1	24022358	.	G	.	.	PASS	END=24022378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	24022379	.	T	.	.	PASS	END=24022405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	24022406	.	T	.	.	PASS	END=24022428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	24022429	.	G	.	.	PASS	END=24022437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	24022438	.	T	.	.	PASS	END=24022439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	24022440	.	T	.	.	PASS	END=24022441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	24022442	.	G	.	.	PASS	END=24022443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	24022444	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr1	24022445	.	G	.	.	PASS	END=24022446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	24022447	.	A	.	.	PASS	END=24022448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chr1	24022449	.	G	.	.	PASS	END=24022453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	24022454	.	T	.	.	PASS	END=24022458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	24022759	.	T	.	.	PASS	END=24022784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	24022785	.	C	.	.	PASS	END=24022824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	24022825	.	C	.	.	PASS	END=24022884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	24022885	.	A	.	.	PASS	END=24022914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	24069885	.	G	.	.	LowGQX	END=24069933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24069934	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	24069935	.	G	.	.	LowGQX	END=24069989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24069990	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	24069991	.	G	.	.	LowGQX	END=24069997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24069998	.	C	.	.	LowGQX	END=24070070	GT	./.
chr1	24075490	.	T	.	.	LowGQX	END=24075589	GT	./.
chr1	24076330	.	A	.	.	LowGQX	END=24076440	GT	./.
chr1	24077333	.	A	.	.	LowGQX	END=24077666	GT	./.
chr1	24077667	.	T	.	.	LowGQX	END=24077668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077669	.	G	.	.	LowGQX	END=24077670	GT	./.
chr1	24077671	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077672	.	C	.	.	LowGQX	.	GT	./.
chr1	24077673	.	A	.	.	LowGQX	END=24077676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077677	.	C	.	.	LowGQX	.	GT	./.
chr1	24077678	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077679	.	G	.	.	LowGQX	.	GT	./.
chr1	24077680	.	A	.	.	LowGQX	END=24077681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077682	.	C	.	.	LowGQX	.	GT	./.
chr1	24077683	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077684	.	C	.	.	LowGQX	END=24077686	GT	./.
chr1	24077687	.	G	.	.	LowGQX	END=24077691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077692	.	G	.	.	LowGQX	END=24077693	GT	./.
chr1	24077694	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077695	.	C	.	.	LowGQX	END=24077696	GT	./.
chr1	24077697	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077698	.	G	.	.	LowGQX	.	GT	./.
chr1	24077699	.	G	.	.	LowGQX	END=24077700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077701	.	G	.	.	LowGQX	.	GT	./.
chr1	24077702	.	C	.	.	LowGQX	END=24077707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077708	.	G	.	.	LowGQX	.	GT	./.
chr1	24077709	.	T	.	.	LowGQX	END=24077711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077712	.	C	.	.	LowGQX	END=24077713	GT	./.
chr1	24077714	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	24077715	.	A	.	.	LowGQX	.	GT	./.
chr1	24077716	.	C	.	.	LowGQX	END=24077718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077719	.	G	.	.	LowGQX	END=24077720	GT	./.
chr1	24077721	.	A	.	.	LowGQX	END=24077723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077724	.	C	.	.	LowGQX	.	GT	./.
chr1	24077725	.	T	.	.	LowGQX	END=24077726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077727	.	G	.	.	LowGQX	.	GT	./.
chr1	24077728	.	G	.	.	LowGQX	END=24077729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077730	.	A	.	.	LowGQX	.	GT	./.
chr1	24077731	.	A	.	.	LowGQX	END=24077732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077733	.	G	.	.	LowGQX	.	GT	./.
chr1	24077734	.	C	.	.	LowGQX	END=24077735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077736	.	A	.	.	LowGQX	.	GT	./.
chr1	24077737	.	C	.	.	LowGQX	END=24077738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077739	.	G	.	.	LowGQX	.	GT	./.
chr1	24077740	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077741	.	A	.	.	LowGQX	.	GT	./.
chr1	24077742	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077743	.	T	.	.	LowGQX	END=24077744	GT	./.
chr1	24077745	.	C	.	.	LowGQX	END=24077747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077748	.	T	.	.	LowGQX	.	GT	./.
chr1	24077749	.	T	.	.	LowGQX	END=24077754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24077755	.	C	.	.	LowGQX	.	GT	./.
chr1	24077756	.	A	.	.	LowGQX	END=24077760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24077761	.	C	.	.	LowGQX	END=24077763	GT	./.
chr1	24077764	.	G	.	.	LowGQX	END=24077766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24077767	.	C	.	.	LowGQX	.	GT	./.
chr1	24077768	.	A	.	.	LowGQX	END=24077776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24077777	.	C	.	.	LowGQX	.	GT	./.
chr1	24077778	.	G	.	.	LowGQX	END=24077782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24077783	.	C	.	.	LowGQX	.	GT	./.
chr1	24077784	.	T	.	.	LowGQX	END=24077785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24077786	.	G	.	.	LowGQX	.	GT	./.
chr1	24077787	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24077788	.	T	.	.	LowGQX	END=24077789	GT	./.
chr1	24077790	.	A	.	.	LowGQX	END=24077792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24077793	.	C	.	.	LowGQX	.	GT	./.
chr1	24077794	.	C	.	.	LowGQX	END=24077796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24077797	.	T	.	.	LowGQX	END=24077799	GT	./.
chr1	24077800	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24077801	.	A	.	.	LowGQX	.	GT	./.
chr1	24077802	.	A	.	.	LowGQX	END=24077805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24077806	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	24077807	.	G	.	.	LowGQX	END=24077808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24077809	.	T	.	.	LowGQX	.	GT	./.
chr1	24077810	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	24077811	.	T	.	.	LowGQX	END=24077814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24077815	.	T	.	.	LowGQX	.	GT	./.
chr1	24077816	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	24077817	.	A	.	.	LowGQX	END=24077820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077821	.	C	.	.	LowGQX	END=24077822	GT	./.
chr1	24077823	.	A	.	.	LowGQX	END=24077824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077825	.	G	.	.	LowGQX	END=24077826	GT	./.
chr1	24077827	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077828	.	C	.	.	LowGQX	END=24077831	GT	./.
chr1	24077832	.	A	.	.	LowGQX	END=24077838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077839	.	C	.	.	LowGQX	END=24077840	GT	./.
chr1	24077841	.	A	.	.	LowGQX	END=24077843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077844	.	A	.	.	LowGQX	.	GT	./.
chr1	24077845	.	G	.	.	LowGQX	END=24077848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077849	.	A	.	.	LowGQX	.	GT	./.
chr1	24077850	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077851	.	A	.	.	LowGQX	.	GT	./.
chr1	24077852	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077853	.	G	.	.	LowGQX	END=24077856	GT	./.
chr1	24077857	.	C	.	.	LowGQX	END=24077859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077860	.	G	.	.	LowGQX	.	GT	./.
chr1	24077861	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077862	.	A	.	.	LowGQX	.	GT	./.
chr1	24077863	.	T	.	.	LowGQX	END=24077865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077866	.	C	.	.	LowGQX	END=24077867	GT	./.
chr1	24077868	.	A	.	.	LowGQX	END=24077874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077875	.	T	.	.	LowGQX	END=24077876	GT	./.
chr1	24077877	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077878	.	G	.	.	LowGQX	.	GT	./.
chr1	24077879	.	A	.	.	LowGQX	END=24077881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077882	.	G	.	.	LowGQX	.	GT	./.
chr1	24077883	.	C	.	.	LowGQX	END=24077884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077885	.	T	.	.	LowGQX	END=24077887	GT	./.
chr1	24077888	.	G	.	.	LowGQX	END=24077890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077891	.	G	.	.	LowGQX	END=24077892	GT	./.
chr1	24077893	.	G	.	.	LowGQX	END=24077894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24077895	.	G	.	.	LowGQX	END=24078522	GT	./.
chr1	24078895	.	A	.	.	LowGQX	END=24079010	GT	./.
chr1	24080588	.	A	.	.	LowGQX	END=24080747	GT	./.
chr1	24080851	.	A	.	.	LowGQX	END=24080952	GT	./.
chr1	24082331	.	A	.	.	LowGQX	END=24082413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24082414	.	T	.	.	LowGQX	END=24082515	GT	./.
chr1	24082762	.	A	.	.	LowGQX	END=24082921	GT	./.
chr1	24083441	.	A	.	.	LowGQX	END=24083519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24083520	.	A	.	.	LowGQX	END=24083617	GT	./.
chr1	24085983	.	C	.	.	LowGQX	END=24086082	GT	./.
chr1	24104933	.	G	.	.	LowGQX	END=24105092	GT	./.
chr1	24105093	.	G	.	.	LowGQX	END=24105097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105098	.	G	.	.	LowGQX	.	GT	./.
chr1	24105099	.	T	.	.	LowGQX	END=24105100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105101	.	C	.	.	LowGQX	.	GT	./.
chr1	24105102	.	C	.	.	LowGQX	END=24105132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105133	.	T	.	.	LowGQX	.	GT	./.
chr1	24105134	.	T	.	.	LowGQX	END=24105137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105138	.	G	.	.	LowGQX	.	GT	./.
chr1	24105139	.	A	.	.	LowGQX	END=24105149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105150	.	G	.	.	LowGQX	.	GT	./.
chr1	24105151	.	G	.	.	LowGQX	END=24105153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105154	.	G	.	.	LowGQX	.	GT	./.
chr1	24105155	.	C	.	.	LowGQX	END=24105161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105162	.	G	.	.	LowGQX	.	GT	./.
chr1	24105163	.	G	.	.	LowGQX	END=24105181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105182	.	G	.	.	LowGQX	.	GT	./.
chr1	24105183	.	G	.	.	LowGQX	END=24105206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105207	.	G	.	.	LowGQX	.	GT	./.
chr1	24105208	.	G	.	.	LowGQX	END=24105212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105213	.	C	.	.	LowGQX	.	GT	./.
chr1	24105214	.	T	.	.	LowGQX	END=24105220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105221	.	T	.	.	LowGQX	.	GT	./.
chr1	24105222	.	G	.	.	LowGQX	END=24105223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105224	.	G	.	.	LowGQX	.	GT	./.
chr1	24105225	.	G	.	.	LowGQX	END=24105243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105244	.	T	.	.	LowGQX	END=24105245	GT	./.
chr1	24105246	.	T	.	.	LowGQX	END=24105249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105250	.	G	.	.	LowGQX	.	GT	./.
chr1	24105251	.	C	.	.	LowGQX	END=24105252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105253	.	T	.	.	LowGQX	END=24105254	GT	./.
chr1	24105255	.	G	.	.	LowGQX	END=24105256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105257	.	G	.	.	LowGQX	.	GT	./.
chr1	24105258	.	C	.	.	LowGQX	END=24105259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105260	.	G	.	.	LowGQX	END=24105261	GT	./.
chr1	24105262	.	C	.	.	LowGQX	END=24105263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105264	.	G	.	.	LowGQX	.	GT	./.
chr1	24105265	.	T	.	.	LowGQX	END=24105268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105269	.	C	.	.	LowGQX	.	GT	./.
chr1	24105270	.	T	.	.	LowGQX	END=24105272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24105900	.	T	.	.	LowGQX	END=24105999	GT	./.
chr1	24106343	.	C	.	.	LowGQX	END=24106442	GT	./.
chr1	24112163	.	A	.	.	LowGQX	END=24112216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24112217	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	24112218	.	A	.	.	LowGQX	END=24112234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24112235	.	C	.	.	LowGQX	.	GT	./.
chr1	24112236	.	G	.	.	LowGQX	END=24112249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24112250	.	G	.	.	LowGQX	.	GT	./.
chr1	24112251	.	A	.	.	LowGQX	END=24112270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24112271	.	T	.	.	LowGQX	.	GT	./.
chr1	24112803	.	A	.	.	LowGQX	END=24112915	GT	./.
chr1	24113763	.	A	.	.	LowGQX	END=24113820	GT	./.
chr1	24113821	.	C	.	.	LowGQX	END=24113822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24113823	.	A	.	.	LowGQX	.	GT	./.
chr1	24113824	.	T	.	.	LowGQX	END=24113837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24113838	.	T	.	.	LowGQX	.	GT	./.
chr1	24113839	.	T	.	.	LowGQX	END=24113853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24113854	.	C	.	.	LowGQX	.	GT	./.
chr1	24113855	.	T	.	.	LowGQX	END=24113868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24119162	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24119163	.	C	.	.	LowGQX	END=24119261	GT	./.
chr1	24119464	.	C	.	.	LowGQX	END=24119563	GT	./.
chr1	24119624	.	T	.	.	LowGQX	END=24119723	GT	./.
chr1	24120169	.	T	.	.	LowGQX	END=24120268	GT	./.
chr1	24120336	.	C	.	.	LowGQX	END=24120435	GT	./.
chr1	24120540	.	C	.	.	LowGQX	END=24120639	GT	./.
chr1	24120712	.	A	.	.	LowGQX	END=24120887	GT	./.
chr1	24120915	.	A	.	.	LowGQX	END=24121082	GT	./.
chr1	24121083	.	G	.	.	LowGQX	END=24121092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24121148	.	G	.	.	LowGQX	END=24121247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24122388	.	C	.	.	PASS	END=24122434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	24122435	.	G	.	.	PASS	END=24122534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	24122535	.	G	.	.	PASS	END=24122548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	24122590	.	T	.	.	PASS	END=24122641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	24122642	.	C	.	.	PASS	END=24122783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	24122784	.	G	.	.	PASS	END=24122806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	24122948	.	G	.	.	PASS	END=24122950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	24122951	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:53:60
chr1	24122952	.	G	.	.	PASS	END=24122958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	24122959	.	G	.	.	PASS	END=24122969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	24122970	.	G	.	.	PASS	END=24122978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	24122979	.	G	.	.	PASS	END=24122985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	24122986	.	C	T	1456.58	SB	BaseQRankSum=2.000;DP=44;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.7632;MQ=60;MQ0=0;MQRankSum=-0.423;QD=33.10;ReadPosRankSum=1.549;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,42:44:99:1490,117,0:60:99:0.955
chr1	24122987	.	G	.	.	PASS	END=24122993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	24122994	.	C	.	.	PASS	END=24123003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	24123004	.	T	.	.	PASS	END=24123022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	24123023	.	A	.	.	PASS	END=24123067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	24123068	.	G	.	.	PASS	END=24123111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	24123112	.	G	.	.	PASS	END=24123127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	24123136	.	T	.	.	PASS	END=24123212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:264:99:60
chr1	24123213	.	T	.	.	PASS	END=24123281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:312:99:60
chr1	24123282	.	A	.	.	PASS	END=24123318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:60
chr1	24123319	.	T	.	.	PASS	END=24123390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	24123391	.	A	.	.	PASS	END=24123506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	24123507	.	C	.	.	PASS	END=24123566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	24123567	.	T	.	.	PASS	END=24123610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	24123611	.	A	.	.	PASS	END=24123637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	24123638	.	C	.	.	PASS	END=24123659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	24123660	.	T	.	.	PASS	END=24123686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	24123687	.	C	.	.	PASS	END=24123688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	24124134	.	T	.	.	PASS	END=24124153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	24124154	.	G	.	.	PASS	END=24124177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	24124178	.	C	.	.	PASS	END=24124273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	24124274	.	C	.	.	PASS	END=24124299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	24124300	.	T	.	.	PASS	END=24124313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	24124314	.	G	.	.	PASS	END=24124342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	24124343	.	C	.	.	PASS	END=24124378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	24124379	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:99:60
chr1	24124380	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:72:60
chr1	24124381	.	A	.	.	PASS	END=24124412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:83:60
chr1	24124556	.	G	.	.	PASS	END=24124571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:86:60
chr1	24124572	.	C	.	.	PASS	END=24124585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	24124586	.	G	.	.	PASS	END=24124637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	24124638	.	A	.	.	PASS	END=24124721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	24124722	.	T	.	.	PASS	END=24124745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	24124746	.	T	.	.	PASS	END=24124777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:91:60
chr1	24124991	.	T	.	.	PASS	END=24124997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	24124998	.	G	.	.	PASS	END=24125036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	24125037	.	C	.	.	PASS	END=24125073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	24125074	.	G	.	.	PASS	END=24125085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	24125086	.	G	.	.	PASS	END=24125116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	24125117	.	A	.	.	PASS	END=24125236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	24125237	.	A	.	.	PASS	END=24125269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	24125270	.	C	.	.	PASS	END=24125271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	24125326	.	T	.	.	PASS	END=24125412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	24125413	.	G	.	.	PASS	END=24125453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	24125454	.	C	.	.	PASS	END=24125489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	24125490	.	T	.	.	PASS	END=24125514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	24125515	.	A	.	.	PASS	END=24125526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	24125527	.	A	.	.	PASS	END=24125529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	24125530	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:60
chr1	24125531	.	G	.	.	PASS	END=24125539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	24125540	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:69:60
chr1	24125541	.	G	.	.	PASS	END=24125548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	24128902	.	T	.	.	PASS	END=24128924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	24128925	.	T	.	.	PASS	END=24128941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	24128942	.	G	.	.	PASS	END=24129075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	24129076	.	A	.	.	PASS	END=24129093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	24129094	.	T	.	.	PASS	END=24129105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	24130813	.	C	.	.	PASS	END=24130817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	24130818	.	C	.	.	PASS	END=24130820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	24130821	.	C	.	.	PASS	END=24130826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	24130827	.	T	.	.	PASS	END=24130830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr1	24130831	.	C	.	.	PASS	END=24130843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	24130844	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:24:60
chr1	24130845	.	C	.	.	PASS	END=24130850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr1	24130851	.	A	.	.	PASS	END=24130854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	24130855	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:57:60
chr1	24130856	.	G	.	.	PASS	END=24130877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	24130878	.	G	.	.	PASS	END=24130904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	24130905	.	G	.	.	PASS	END=24130927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	24130928	.	C	.	.	PASS	END=24130995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	24130996	.	T	.	.	PASS	END=24130997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	24130998	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:73:60
chr1	24130999	.	A	.	.	PASS	END=24131038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:60
chr1	24131039	.	C	.	.	PASS	END=24131052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	24131053	.	G	.	.	PASS	END=24131064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	24131065	.	C	.	.	PASS	END=24131066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	24133475	.	G	.	.	LowGQX	END=24133574	GT	./.
chr1	24133644	.	C	.	.	LowGQX	END=24133775	GT	./.
chr1	24134574	.	C	.	.	PASS	END=24134595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	24134596	.	T	.	.	PASS	END=24134634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	24134635	.	A	.	.	PASS	END=24134687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	24134688	.	G	.	.	PASS	END=24134720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:291:99:60
chr1	24134721	.	T	C	8415.92	PASS	DP=294;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=27.6166;MQ=60;MQ0=0;QD=28.63;SB=-5046.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,294:294:99:8416,626,0:60:99:1.000
chr1	24134722	.	A	.	.	PASS	END=24134761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:258:99:60
chr1	24134762	.	T	.	.	PASS	END=24134791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	24134792	.	T	.	.	PASS	END=24134817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	24134818	.	G	.	.	PASS	END=24134849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	24134850	.	C	.	.	PASS	END=24134864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	24137175	.	G	.	.	PASS	END=24137222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:98:60
chr1	24137223	.	C	.	.	PASS	END=24137340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	24140629	.	C	.	.	PASS	END=24140639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	24140640	.	A	.	.	PASS	END=24140641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	24140642	.	C	T	496.73	PASS	BaseQRankSum=0.681;DP=31;Dels=0.00;FS=2.034;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.929;QD=16.02;ReadPosRankSum=-0.310;SB=-120.33	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:11,20:31:99:527,0,323:60:99:0.645
chr1	24140643	.	G	.	.	PASS	END=24140655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	24140656	.	G	.	.	PASS	END=24140667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	24140668	.	G	.	.	PASS	END=24140692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	24140693	.	T	.	.	PASS	END=24140763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	24140764	.	T	.	.	PASS	END=24140812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	24140813	.	T	.	.	PASS	END=24140859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:97:60
chr1	24140860	.	C	.	.	PASS	END=24140879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	24143114	.	A	.	.	PASS	END=24143117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	24143118	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:61:60
chr1	24143119	.	C	.	.	PASS	END=24143125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:89:60
chr1	24143126	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:72:60
chr1	24143127	.	T	.	.	PASS	END=24143158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	24143159	.	T	.	.	PASS	END=24143200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	24143201	.	T	.	.	PASS	END=24143280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	24143281	.	T	.	.	PASS	END=24143311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	24143915	.	C	.	.	PASS	END=24143931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	24143932	.	A	G	1967.72	PASS	DP=70;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.8408;MQ=60;MQ0=0;QD=28.11;SB=-663.18	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,70:70:99:2001,150,0:60:99:1.000
chr1	24143933	.	G	.	.	PASS	END=24144079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:84:60
chr1	24144080	.	T	.	.	PASS	END=24144113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	24144114	.	A	.	.	PASS	END=24144124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	24146949	.	T	.	.	PASS	END=24147050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	24147051	.	C	.	.	PASS	END=24147065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	24147066	.	C	.	.	PASS	END=24147086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	24147087	.	T	.	.	PASS	END=24147098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	24147099	.	G	.	.	PASS	END=24147134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	24151795	.	G	.	.	PASS	END=24151903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	24151904	.	A	.	.	PASS	END=24151933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	24151934	.	A	.	.	PASS	END=24151943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	24151944	.	C	.	.	PASS	END=24151956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	24164558	.	G	.	.	LowGQX	END=24164688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24164689	.	G	T	14.90	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.45;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	24164690	.	C	.	.	LowGQX	END=24164708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24164709	.	T	.	.	LowGQX	.	GT	./.
chr1	24164710	.	G	.	.	LowGQX	END=24164718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24164719	.	T	.	.	LowGQX	.	GT	./.
chr1	24164720	.	C	.	.	LowGQX	END=24164721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24164722	.	C	.	.	LowGQX	.	GT	./.
chr1	24164723	.	G	.	.	LowGQX	END=24164726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24164727	.	T	.	.	LowGQX	.	GT	./.
chr1	24164728	.	G	.	.	LowGQX	END=24164733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24164734	.	T	.	.	LowGQX	.	GT	./.
chr1	24164735	.	G	.	.	LowGQX	END=24164779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24164780	.	T	.	.	LowGQX	.	GT	./.
chr1	24164781	.	T	.	.	LowGQX	END=24164788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24172154	.	C	.	.	PASS	END=24172170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	24172171	.	T	.	.	PASS	END=24172198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	24172199	.	A	.	.	PASS	END=24172240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	24172241	.	C	.	.	PASS	END=24172257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	24172258	.	A	.	.	PASS	END=24172349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	24172350	.	A	.	.	PASS	END=24172391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	24172392	.	A	.	.	PASS	END=24172396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	24172513	.	G	.	.	PASS	END=24172551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	24172552	.	A	.	.	PASS	END=24172579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	24172580	.	G	.	.	PASS	END=24172629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	24172630	.	A	.	.	PASS	END=24172692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	24172693	.	A	.	.	PASS	END=24172709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	24172710	.	C	.	.	PASS	END=24172714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:60
chr1	24175088	.	T	.	.	PASS	END=24175097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	24175098	.	G	.	.	PASS	END=24175103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	24175104	.	T	.	.	PASS	END=24175118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	24175119	.	C	.	.	PASS	END=24175121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	24175122	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:42:60
chr1	24175123	.	A	.	.	PASS	END=24175139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	24175140	.	A	.	.	PASS	END=24175151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	24175152	.	T	.	.	PASS	END=24175171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	24175172	.	C	.	.	PASS	END=24175186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:91:60
chr1	24175187	.	G	.	.	PASS	END=24175230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	24175231	.	A	.	.	PASS	END=24175310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	24175311	.	T	.	.	PASS	END=24175335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	24175336	.	A	.	.	PASS	END=24175380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	24180809	.	A	.	.	PASS	END=24180819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:58
chr1	24180820	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:2:59
chr1	24180821	.	A	.	.	PASS	END=24180825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:59
chr1	24180826	.	C	.	34.05	LowGQX	DP=20;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:16:20:4.06:59:4
chr1	24180827	.	A	.	.	PASS	END=24180832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:59
chr1	24180833	.	C	.	.	PASS	END=24180834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr1	24180835	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:27:60
chr1	24180836	.	A	.	.	PASS	END=24180839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	24180840	.	G	.	.	PASS	END=24180841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr1	24180842	.	G	.	.	PASS	END=24180844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	24180845	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:0:60
chr1	24180846	.	T	.	.	PASS	END=24180852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:60
chr1	24180853	.	A	.	.	PASS	END=24180855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:54:60
chr1	24180856	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:51:60
chr1	24180857	.	A	.	.	PASS	END=24180866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:60
chr1	24180867	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:41:60
chr1	24180868	.	T	.	.	PASS	END=24180873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	24180874	.	A	.	.	PASS	END=24180904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	24180905	.	C	.	.	PASS	END=24180925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	24180926	.	C	.	.	PASS	END=24181004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	24181005	.	G	.	.	PASS	END=24181027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	24181028	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:72:60
chr1	24181029	.	G	.	.	PASS	END=24181056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	24181057	.	A	.	.	PASS	END=24181079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	24181080	.	G	.	.	PASS	END=24181087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	24181088	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:24:60
chr1	24181089	.	C	.	.	PASS	END=24181099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	24181100	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:21:60
chr1	24181101	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:63:60
chr1	24186237	.	T	.	.	PASS	END=24186278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	24186279	.	A	.	.	PASS	END=24186303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	24186304	.	T	.	.	PASS	END=24186357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	24186358	.	C	.	.	PASS	END=24186420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	24186421	.	T	.	.	PASS	END=24186437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	24186438	.	T	.	.	PASS	END=24186444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:86:60
chr1	24189573	.	C	.	.	PASS	END=24189597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	24189598	.	A	.	.	PASS	END=24189616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	24189617	.	G	.	.	PASS	END=24189712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	24189713	.	T	.	.	PASS	END=24189733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	24189734	.	T	.	.	PASS	END=24189748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	24189749	.	A	.	.	PASS	END=24189767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	24189768	.	C	.	.	PASS	END=24189783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	24189784	.	C	.	.	PASS	END=24189793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	24189794	.	T	.	.	PASS	END=24189801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:54:60
chr1	24189802	.	G	.	.	PASS	END=24189812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	24191930	.	T	.	.	PASS	END=24191935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	24191936	.	G	.	.	PASS	END=24191960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	24191961	.	A	.	.	PASS	END=24191965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	24191966	.	T	.	.	PASS	END=24191975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	24191976	.	C	.	.	PASS	END=24192019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	24192020	.	C	.	.	PASS	END=24192093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	24192094	.	C	.	.	PASS	END=24192100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	24192101	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:69:60
chr1	24192102	.	T	.	.	PASS	END=24192121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	24192122	.	A	.	.	PASS	END=24192130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr1	24192131	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:39:60
chr1	24192132	.	C	.	.	PASS	END=24192156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	24192157	.	G	.	.	PASS	END=24192166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	24194337	.	T	.	.	PASS	END=24194349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	24194350	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr1	24194351	.	G	.	.	PASS	END=24194369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	24194370	.	C	.	.	PASS	END=24194376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:75:60
chr1	24194377	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:51:60
chr1	24194378	.	C	.	.	PASS	END=24194381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	24194382	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:60:60
chr1	24194383	.	C	.	.	PASS	END=24194399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr1	24194400	.	G	.	.	PASS	END=24194440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:60
chr1	24194441	.	C	.	.	PASS	END=24194495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	24194496	.	C	.	.	PASS	END=24194515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	24194516	.	C	.	.	PASS	END=24194582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	24194583	.	C	.	.	PASS	END=24194665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	24194666	.	G	.	.	PASS	END=24194685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	24194686	.	C	.	.	PASS	END=24194692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	24194693	.	C	.	.	PASS	END=24194715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	24194716	.	A	.	.	PASS	END=24194734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	24194735	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:72:60
chr1	24194736	.	G	.	.	PASS	END=24194746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	24194747	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:69:60
chr1	24194748	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:99:60
chr1	24194749	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:72:60
chr1	24194750	.	C	.	.	PASS	END=24194759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	24194760	.	A	.	.	PASS	END=24194761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:74:60
chr1	24194762	.	C	.	.	PASS	END=24194775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	24194776	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:63:60
chr1	24194777	.	C	.	.	PASS	END=24194788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	24194789	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:60:60
chr1	24194790	.	C	.	.	PASS	END=24194791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	24194792	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:30:60
chr1	24194793	.	C	.	.	PASS	END=24194802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	24194803	.	T	.	.	PASS	END=24194805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	24194806	.	T	.	.	PASS	END=24194807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:33:60
chr1	24194808	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:45:60
chr1	24194809	.	C	.	.	PASS	END=24194810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	24194811	.	C	.	.	PASS	END=24194813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	24194814	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:6:60
chr1	24194815	.	G	.	.	PASS	END=24194816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	24194817	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:0:60
chr1	24194818	.	G	.	.	PASS	END=24194827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	24201023	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	24201024	.	A	.	.	PASS	END=24201028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	24201029	.	C	.	.	LowGQX	END=24201030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	24201031	.	A	.	.	PASS	END=24201037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	24201038	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:60
chr1	24201039	.	G	.	.	PASS	END=24201041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	24201042	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:33:60
chr1	24201043	.	T	.	.	PASS	END=24201062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	24201063	.	A	.	.	PASS	END=24201064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:60
chr1	24201065	.	G	.	.	PASS	END=24201068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	24201069	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:30:60
chr1	24201070	.	G	.	.	PASS	END=24201078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	24201079	.	A	.	.	PASS	END=24201082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chr1	24201083	.	G	.	.	PASS	END=24201085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	24201086	.	T	.	.	PASS	END=24201088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	24201089	.	G	.	.	PASS	END=24201093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	24201094	.	G	C	469.37	PASS	DP=18;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.8938;MQ=60;MQ0=0;QD=26.08;SB=-193.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,18:18:39.12:502,39,0:60:39:1.000
chr1	24201095	.	G	.	.	PASS	END=24201108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	24201109	.	C	T	487.16	PASS	DP=19;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=25.64;SB=-267.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,19:19:39.13:520,39,0:60:39:1.000
chr1	24201110	.	G	.	.	PASS	END=24201131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	24201132	.	A	.	.	PASS	END=24201145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	24201146	.	A	.	.	PASS	END=24201148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	24201149	.	C	.	.	PASS	END=24201150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	24201151	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:9:60
chr1	24201152	.	T	.	.	PASS	END=24201168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	24201169	.	G	.	.	PASS	END=24201191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	24201192	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	24201193	.	C	.	.	PASS	END=24201222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	24201223	.	G	.	.	PASS	END=24201234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	24201235	.	G	.	.	PASS	END=24201250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	24201251	.	A	.	.	PASS	END=24201253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	24201254	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:65:60
chr1	24201255	.	A	.	.	PASS	END=24201261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	24201262	.	A	G	1095.67	PASS	DP=35;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.8408;MQ=60;MQ0=0;QD=31.30;SB=-591.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,35:35:87.28:1129,87,0:60:87:1.000
chr1	24201263	.	G	.	.	PASS	END=24201312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	24201313	.	C	.	.	PASS	END=24201332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	24201333	.	A	.	.	PASS	END=24201337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	24201338	.	C	.	.	PASS	END=24201356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	24201357	.	A	G	992.47	PASS	DP=31;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=32.02;SB=-559.67	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,31:31:81.24:1025,81,0:60:81:1.000
chr1	24201358	.	C	.	.	PASS	END=24201371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	24201372	.	T	.	.	PASS	END=24201379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	24201380	.	A	.	.	PASS	END=24201381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	24201382	.	C	.	.	PASS	END=24201393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	24201394	.	C	.	.	PASS	END=24201400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	24201401	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:15:60
chr1	24201402	.	G	.	.	PASS	END=24201420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	24201421	.	C	.	.	PASS	END=24201447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	24201448	.	C	T	819.14	PASS	DP=28;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=29.26;SB=-451.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,28:28:66.21:852,66,0:60:66:1.000
chr1	24201449	.	A	.	.	PASS	END=24201475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	24201476	.	T	.	.	PASS	END=24201479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	24201480	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:51:60
chr1	24201481	.	A	.	.	PASS	END=24201494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	24201495	.	T	.	.	PASS	END=24201525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	24201526	.	C	.	.	PASS	END=24201551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	24201552	.	T	.	.	PASS	END=24201554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr1	24201555	.	G	.	.	PASS	END=24201583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	24201584	.	C	.	.	PASS	END=24201620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	24201621	.	G	.	.	PASS	END=24201642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	24201643	.	G	A	949.36	PASS	DP=32;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=29.67;SB=-566.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,32:32:75.23:982,75,0:60:75:1.000
chr1	24201644	.	C	.	.	PASS	END=24201653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	24201654	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:45:60
chr1	24201655	.	C	.	.	PASS	END=24201663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	24201664	.	T	.	.	PASS	END=24201731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	24201732	.	G	.	.	PASS	END=24201752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	24201753	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:66:60
chr1	24201754	.	T	.	.	PASS	END=24201769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	24201770	.	A	.	.	PASS	END=24201793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	24201794	.	A	.	.	PASS	END=24201796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	24201797	.	G	.	.	PASS	END=24201808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	24201809	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:66:60
chr1	24201810	.	C	.	.	PASS	END=24201843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	24201844	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:42:60
chr1	24201845	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:87:60
chr1	24201846	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:54:60
chr1	24201847	.	A	.	.	PASS	END=24201873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:80:60
chr1	24201874	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:69:60
chr1	24201875	.	C	.	.	PASS	END=24201918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	24201919	.	T	C	1263.81	PASS	BaseQRankSum=0.766;DP=43;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=0.927;QD=29.39;ReadPosRankSum=-0.363;SB=-742.49	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,42:43:69.20:1297,69,0:60:69:0.977
chr1	24201920	.	T	C	1178.78	PASS	BaseQRankSum=0.040;DP=43;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=1.571;QD=27.41;ReadPosRankSum=-0.363;SB=-647.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,42:43:59.99:1212,60,0:60:60:0.977
chr1	24201921	.	G	.	.	PASS	END=24201965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	24201966	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:73:60
chr1	24201967	.	A	.	.	PASS	END=24202109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr1	24287946	.	A	.	.	LowGQX	END=24288369	GT	./.
chr1	24294134	.	T	.	.	LowGQX	END=24294233	GT	./.
chr1	24294381	.	A	.	.	LowGQX	END=24294480	GT	./.
chr1	24297630	.	T	.	.	LowGQX	END=24297645	GT	./.
chr1	24297646	.	A	.	.	LowGQX	END=24297794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24297795	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	24297796	.	A	.	.	LowGQX	END=24297833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24297834	.	C	.	.	LowGQX	END=24297931	GT	./.
chr1	24298040	.	T	.	.	LowGQX	END=24298190	GT	./.
chr1	24298308	.	A	.	.	LowGQX	END=24298504	GT	./.
chr1	24301462	.	A	.	.	LowGQX	END=24301569	GT	./.
chr1	24305195	.	A	.	.	LowGQX	END=24305309	GT	./.
chr1	24306604	.	G	.	.	LowGQX	END=24306763	GT	./.
chr1	24383852	.	T	.	.	LowGQX	END=24383856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24383857	.	C	.	.	LowGQX	.	GT	./.
chr1	24383858	.	A	.	.	LowGQX	END=24383867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24383868	.	G	.	.	LowGQX	.	GT	./.
chr1	24383869	.	C	.	.	LowGQX	END=24383870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24383871	.	C	.	.	LowGQX	.	GT	./.
chr1	24383872	.	C	.	.	LowGQX	END=24383879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24383880	.	C	.	.	LowGQX	.	GT	./.
chr1	24383881	.	G	.	.	LowGQX	END=24383890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24383891	.	T	.	.	LowGQX	.	GT	./.
chr1	24383892	.	T	.	.	LowGQX	END=24383893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24383894	.	A	.	.	LowGQX	.	GT	./.
chr1	24383895	.	A	.	.	LowGQX	END=24383918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24383919	.	T	.	.	LowGQX	.	GT	./.
chr1	24383920	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24383921	.	T	.	.	LowGQX	.	GT	./.
chr1	24383922	.	C	.	.	LowGQX	END=24383923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24383924	.	G	.	.	LowGQX	.	GT	./.
chr1	24383925	.	A	.	.	LowGQX	END=24383939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24383940	.	T	.	.	LowGQX	.	GT	./.
chr1	24383941	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24383942	.	A	.	.	LowGQX	.	GT	./.
chr1	24383943	.	C	.	.	LowGQX	END=24383949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24383950	.	G	.	.	LowGQX	.	GT	./.
chr1	24383951	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24383952	.	C	.	.	LowGQX	.	GT	./.
chr1	24383953	.	G	.	.	LowGQX	END=24383956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24383957	.	C	.	.	LowGQX	.	GT	./.
chr1	24383958	.	G	.	.	LowGQX	END=24383963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24383964	.	T	.	.	LowGQX	END=24383965	GT	./.
chr1	24383966	.	T	.	.	LowGQX	END=24384050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24384051	.	G	.	.	LowGQX	.	GT	./.
chr1	24384052	.	G	.	.	LowGQX	END=24384056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24384057	.	T	.	.	LowGQX	.	GT	./.
chr1	24384058	.	C	.	.	LowGQX	END=24384073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24384074	.	T	.	.	LowGQX	.	GT	./.
chr1	24384075	.	C	.	.	LowGQX	END=24384078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24384079	.	G	.	.	LowGQX	END=24384080	GT	./.
chr1	24384081	.	T	.	.	LowGQX	END=24384093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24384094	.	G	.	.	LowGQX	.	GT	./.
chr1	24384095	.	A	.	.	LowGQX	END=24384098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24384099	.	T	.	.	LowGQX	.	GT	./.
chr1	24384100	.	G	.	.	LowGQX	END=24384107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24384108	.	A	.	.	LowGQX	.	GT	./.
chr1	24384109	.	G	.	.	LowGQX	END=24384119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24385392	.	G	.	.	LowGQX	END=24385491	GT	./.
chr1	24387512	.	T	.	.	LowGQX	END=24387611	GT	./.
chr1	24387697	.	A	.	.	LowGQX	END=24387770	GT	./.
chr1	24387771	.	C	.	.	LowGQX	END=24387831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24388434	.	A	.	.	LowGQX	END=24388601	GT	./.
chr1	24389614	.	A	.	.	LowGQX	END=24389726	GT	./.
chr1	24389952	.	C	.	.	LowGQX	END=24390051	GT	./.
chr1	24390556	.	T	.	.	LowGQX	END=24390655	GT	./.
chr1	24392275	.	A	.	.	LowGQX	END=24392279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392280	.	C	.	.	LowGQX	END=24392281	GT	./.
chr1	24392282	.	T	.	.	LowGQX	END=24392287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392288	.	C	.	.	LowGQX	.	GT	./.
chr1	24392289	.	G	.	.	LowGQX	END=24392293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392294	.	T	.	.	LowGQX	.	GT	./.
chr1	24392295	.	G	.	.	LowGQX	END=24392296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392297	.	C	.	.	LowGQX	END=24392298	GT	./.
chr1	24392299	.	T	.	.	LowGQX	END=24392306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392307	.	A	.	.	LowGQX	.	GT	./.
chr1	24392308	.	G	.	.	LowGQX	END=24392312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392313	.	G	.	.	LowGQX	.	GT	./.
chr1	24392314	.	A	.	.	LowGQX	END=24392321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392322	.	G	.	.	LowGQX	END=24392323	GT	./.
chr1	24392324	.	C	.	.	LowGQX	END=24392325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392326	.	T	.	.	LowGQX	END=24392327	GT	./.
chr1	24392328	.	C	.	.	LowGQX	END=24392332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392333	.	C	.	.	LowGQX	.	GT	./.
chr1	24392334	.	T	.	.	LowGQX	END=24392335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392336	.	G	.	.	LowGQX	END=24392337	GT	./.
chr1	24392338	.	A	.	.	LowGQX	END=24392343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392344	.	A	.	.	LowGQX	.	GT	./.
chr1	24392345	.	G	.	.	LowGQX	END=24392348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392349	.	A	.	.	LowGQX	END=24392350	GT	./.
chr1	24392351	.	A	.	.	LowGQX	END=24392354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392355	.	A	.	.	LowGQX	END=24392356	GT	./.
chr1	24392357	.	C	.	.	LowGQX	END=24392359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392360	.	T	.	.	LowGQX	.	GT	./.
chr1	24392361	.	G	.	.	LowGQX	END=24392364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392365	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	24392366	.	T	.	.	LowGQX	END=24392368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392369	.	A	.	.	LowGQX	.	GT	./.
chr1	24392370	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392371	.	C	.	.	LowGQX	.	GT	./.
chr1	24392372	.	C	.	.	LowGQX	END=24392387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392388	.	A	.	.	LowGQX	.	GT	./.
chr1	24392389	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392390	.	G	.	.	LowGQX	.	GT	./.
chr1	24392391	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392392	.	A	.	.	LowGQX	END=24392493	GT	./.
chr1	24392503	.	G	.	.	LowGQX	END=24392595	GT	./.
chr1	24392596	.	C	.	.	LowGQX	END=24392619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392620	.	T	.	.	LowGQX	.	GT	./.
chr1	24392621	.	G	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	24392622	.	G	.	.	LowGQX	END=24392624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392625	.	T	.	.	LowGQX	.	GT	./.
chr1	24392626	.	C	.	.	LowGQX	END=24392669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392670	.	C	.	.	LowGQX	.	GT	./.
chr1	24392671	.	T	.	.	LowGQX	END=24392690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392691	.	A	.	.	LowGQX	.	GT	./.
chr1	24392692	.	T	.	.	LowGQX	END=24392694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24392695	.	C	.	.	LowGQX	.	GT	./.
chr1	24392696	.	C	.	.	LowGQX	END=24392698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24393496	.	C	.	.	LowGQX	END=24393577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24393578	.	C	.	.	LowGQX	END=24393595	GT	./.
chr1	24394440	.	T	.	.	LowGQX	END=24394479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24394480	.	C	.	.	LowGQX	END=24394539	GT	./.
chr1	24394711	.	A	.	.	LowGQX	END=24394777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24394778	.	G	.	.	LowGQX	END=24394813	GT	./.
chr1	24394814	.	A	.	.	LowGQX	END=24394819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24394820	.	A	.	.	LowGQX	.	GT	./.
chr1	24394821	.	C	.	.	LowGQX	END=24394838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24394839	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	24394840	.	A	.	.	LowGQX	END=24394859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24397605	.	A	.	.	LowGQX	END=24397745	GT	./.
chr1	24398432	.	G	.	.	LowGQX	END=24398527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24398528	.	A	.	.	LowGQX	.	GT	./.
chr1	24398529	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24398530	.	A	.	.	LowGQX	.	GT	./.
chr1	24398531	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24400648	.	A	.	.	LowGQX	END=24400761	GT	./.
chr1	24401777	.	T	.	.	LowGQX	END=24401967	GT	./.
chr1	24402647	.	A	.	.	LowGQX	END=24402765	GT	./.
chr1	24406504	.	A	.	.	LowGQX	END=24406686	GT	./.
chr1	24407818	.	A	.	.	LowGQX	END=24407948	GT	./.
chr1	24408489	.	A	.	.	LowGQX	END=24408500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24408501	.	C	.	.	LowGQX	END=24408680	GT	./.
chr1	24409081	.	A	.	.	LowGQX	END=24409206	GT	./.
chr1	24410801	.	T	.	.	LowGQX	END=24410931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24410932	.	A	.	.	LowGQX	END=24410977	GT	./.
chr1	24410978	.	G	.	.	LowGQX	END=24411083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24411084	.	T	.	.	LowGQX	END=24411131	GT	./.
chr1	24413132	.	A	.	.	LowGQX	END=24413319	GT	./.
chr1	24416026	.	A	.	.	LowGQX	END=24416157	GT	./.
chr1	24416532	.	G	.	.	LowGQX	END=24416631	GT	./.
chr1	24417285	.	A	.	.	LowGQX	END=24417488	GT	./.
chr1	24418631	.	C	.	.	LowGQX	END=24418692	GT	./.
chr1	24418693	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418694	.	C	.	.	LowGQX	.	GT	./.
chr1	24418695	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418696	.	C	.	.	LowGQX	.	GT	./.
chr1	24418697	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418698	.	G	.	.	LowGQX	.	GT	./.
chr1	24418699	.	G	.	.	LowGQX	END=24418700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418701	.	T	.	.	LowGQX	END=24418702	GT	./.
chr1	24418703	.	T	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	24418704	.	C	.	.	LowGQX	END=24418705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418706	.	C	.	.	LowGQX	END=24418707	GT	./.
chr1	24418708	.	G	.	.	LowGQX	END=24418713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418714	.	G	.	.	LowGQX	.	GT	./.
chr1	24418715	.	G	.	.	LowGQX	END=24418716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418717	.	C	.	.	LowGQX	.	GT	./.
chr1	24418718	.	C	.	.	LowGQX	END=24418719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418720	.	A	.	.	LowGQX	.	GT	./.
chr1	24418721	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418722	.	T	.	.	LowGQX	.	GT	./.
chr1	24418723	.	C	.	.	LowGQX	END=24418733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418734	.	A	.	.	LowGQX	.	GT	./.
chr1	24418735	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418736	.	T	.	.	LowGQX	.	GT	./.
chr1	24418737	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418738	.	T	.	.	LowGQX	.	GT	./.
chr1	24418739	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418740	.	T	.	.	LowGQX	.	GT	./.
chr1	24418741	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418742	.	T	.	.	LowGQX	END=24418743	GT	./.
chr1	24418744	.	C	.	.	LowGQX	END=24418763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418764	.	T	.	.	LowGQX	.	GT	./.
chr1	24418765	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418766	.	A	.	.	LowGQX	.	GT	./.
chr1	24418767	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418768	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	24418769	.	G	.	.	LowGQX	END=24418776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418777	.	T	.	.	LowGQX	.	GT	./.
chr1	24418778	.	G	.	.	LowGQX	END=24418781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418782	.	C	.	.	LowGQX	END=24418784	GT	./.
chr1	24418785	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418786	.	G	.	.	LowGQX	.	GT	./.
chr1	24418787	.	G	.	.	LowGQX	END=24418790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418791	.	T	.	.	LowGQX	.	GT	./.
chr1	24418792	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418793	.	T	.	.	LowGQX	.	GT	./.
chr1	24418794	.	C	.	.	LowGQX	END=24418798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418799	.	T	.	.	LowGQX	.	GT	./.
chr1	24418800	.	C	.	.	LowGQX	END=24418802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418803	.	C	.	.	LowGQX	.	GT	./.
chr1	24418804	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418805	.	T	.	.	LowGQX	.	GT	./.
chr1	24418806	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418807	.	T	.	.	LowGQX	END=24418808	GT	./.
chr1	24418809	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418810	.	A	.	.	LowGQX	.	GT	./.
chr1	24418811	.	A	.	.	LowGQX	END=24418813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418814	.	C	.	.	LowGQX	.	GT	./.
chr1	24418815	.	G	.	.	LowGQX	END=24418818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418819	.	G	.	.	LowGQX	END=24418820	GT	./.
chr1	24418821	.	G	.	.	LowGQX	END=24418832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24418833	.	C	.	.	LowGQX	END=24418834	GT	./.
chr1	24418835	.	T	.	.	LowGQX	END=24418841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24419435	.	A	.	.	LowGQX	END=24419454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24419455	.	T	.	.	LowGQX	.	GT	./.
chr1	24419456	.	G	.	.	LowGQX	END=24419464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24419465	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	24419466	.	C	.	.	LowGQX	END=24419495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24419496	.	A	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	24419497	.	T	.	.	LowGQX	END=24419574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24419575	.	G	.	.	LowGQX	END=24419624	GT	./.
chr1	24421341	.	A	.	.	LowGQX	END=24421343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24421344	.	A	.	.	LowGQX	.	GT	./.
chr1	24421345	.	T	.	.	LowGQX	END=24421349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24421350	.	G	.	.	LowGQX	.	GT	./.
chr1	24421351	.	A	.	.	LowGQX	END=24421356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24421357	.	T	.	.	LowGQX	.	GT	./.
chr1	24421358	.	G	.	.	LowGQX	END=24421363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24421364	.	T	.	.	LowGQX	.	GT	./.
chr1	24421365	.	C	.	.	LowGQX	END=24421372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24421373	.	C	.	.	LowGQX	.	GT	./.
chr1	24421374	.	T	.	.	LowGQX	END=24421380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24421381	.	T	.	.	LowGQX	.	GT	./.
chr1	24421382	.	C	.	.	LowGQX	END=24421384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24421385	.	C	.	.	LowGQX	.	GT	./.
chr1	24421386	.	C	.	.	LowGQX	END=24421389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24421390	.	A	.	.	LowGQX	END=24421391	GT	./.
chr1	24421392	.	C	.	.	LowGQX	END=24421394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24421395	.	G	.	.	LowGQX	.	GT	./.
chr1	24421396	.	C	.	.	LowGQX	END=24421399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24421400	.	A	.	.	LowGQX	.	GT	./.
chr1	24421401	.	C	.	.	LowGQX	END=24421405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24421406	.	A	.	.	LowGQX	END=24421407	GT	./.
chr1	24421408	.	A	.	.	LowGQX	END=24421412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24421413	.	T	.	.	LowGQX	.	GT	./.
chr1	24421414	.	T	.	.	LowGQX	END=24421437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24421438	.	T	.	.	LowGQX	END=24421439	GT	./.
chr1	24421440	.	C	.	.	LowGQX	END=24421445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24421446	.	C	.	.	LowGQX	END=24421482	GT	./.
chr1	24421905	.	G	.	.	LowGQX	END=24422004	GT	./.
chr1	24424408	.	C	.	.	LowGQX	END=24424507	GT	./.
chr1	24426168	.	A	.	.	LowGQX	END=24426267	GT	./.
chr1	24432408	.	A	.	.	LowGQX	END=24432553	GT	./.
chr1	24432554	.	A	.	.	LowGQX	END=24432555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24432556	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	24432557	.	T	.	.	LowGQX	END=24432569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24433561	.	A	.	.	LowGQX	END=24433582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24433583	.	A	.	.	LowGQX	.	GT	./.
chr1	24433584	.	G	.	.	LowGQX	END=24433602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24433603	.	A	.	.	LowGQX	.	GT	./.
chr1	24433604	.	G	.	.	LowGQX	END=24433607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24433608	.	G	.	.	LowGQX	.	GT	./.
chr1	24433609	.	T	.	.	LowGQX	END=24433612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24433613	.	T	.	.	LowGQX	.	GT	./.
chr1	24433614	.	C	.	.	LowGQX	END=24433627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24433628	.	T	.	.	LowGQX	.	GT	./.
chr1	24433629	.	C	.	.	LowGQX	END=24433637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24433638	.	C	.	.	LowGQX	.	GT	./.
chr1	24433639	.	T	.	.	LowGQX	END=24433642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24433643	.	A	.	.	LowGQX	.	GT	./.
chr1	24433644	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24433645	.	T	.	.	LowGQX	.	GT	./.
chr1	24433646	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24433647	.	A	.	.	LowGQX	END=24433648	GT	./.
chr1	24433649	.	T	.	.	LowGQX	END=24433653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24433654	.	A	.	.	LowGQX	.	GT	./.
chr1	24433655	.	A	.	.	LowGQX	END=24433656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24433657	.	C	.	.	LowGQX	END=24433703	GT	./.
chr1	24433704	.	G	.	.	LowGQX	END=24433708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24433709	.	T	.	.	LowGQX	.	GT	./.
chr1	24433710	.	C	.	.	LowGQX	END=24433724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24434474	.	C	.	.	LowGQX	END=24434568	GT	./.
chr1	24434569	.	C	.	.	LowGQX	END=24434572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24434573	.	G	.	.	LowGQX	.	GT	./.
chr1	24434943	.	G	.	.	LowGQX	END=24435067	GT	./.
chr1	24435068	.	T	.	.	LowGQX	END=24435153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24447293	.	C	.	.	LowGQX	END=24448010	GT	./.
chr1	24448011	.	G	.	.	LowGQX	END=24448100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24448101	.	A	.	.	LowGQX	.	GT	./.
chr1	24448102	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24448103	.	A	.	.	LowGQX	.	GT	./.
chr1	24448104	.	C	.	.	LowGQX	END=24448106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24448107	.	T	.	.	LowGQX	.	GT	./.
chr1	24448108	.	G	.	.	LowGQX	END=24448109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24448110	.	T	.	.	LowGQX	.	GT	./.
chr1	24448111	.	C	.	.	LowGQX	END=24448115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24448116	.	A	.	.	LowGQX	.	GT	./.
chr1	24448117	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24448118	.	T	.	.	LowGQX	.	GT	./.
chr1	24448119	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24448120	.	C	.	.	LowGQX	END=24448121	GT	./.
chr1	24448122	.	G	.	.	LowGQX	END=24448127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24448128	.	G	.	.	LowGQX	.	GT	./.
chr1	24448129	.	C	.	.	LowGQX	END=24448133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24448134	.	C	.	.	LowGQX	END=24448135	GT	./.
chr1	24448136	.	A	.	.	LowGQX	END=24448137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24448138	.	A	.	.	LowGQX	.	GT	./.
chr1	24448139	.	C	.	.	LowGQX	END=24448151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24448152	.	T	.	.	LowGQX	.	GT	./.
chr1	24448153	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24448154	.	A	.	.	LowGQX	END=24448155	GT	./.
chr1	24448156	.	G	.	.	LowGQX	END=24448157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24448158	.	C	.	.	LowGQX	END=24448229	GT	./.
chr1	24449790	.	A	.	.	LowGQX	END=24450033	GT	./.
chr1	24454629	.	A	.	.	LowGQX	END=24454827	GT	./.
chr1	24460688	.	A	.	.	LowGQX	END=24460699	GT	./.
chr1	24460700	.	C	.	.	LowGQX	END=24460723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24460724	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	24460725	.	G	.	.	LowGQX	END=24460796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24460797	.	T	.	.	LowGQX	.	GT	./.
chr1	24460798	.	G	.	.	LowGQX	END=24460799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24460800	.	C	.	.	LowGQX	.	GT	./.
chr1	24460801	.	G	.	.	LowGQX	END=24460812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24460813	.	T	.	.	LowGQX	END=24460878	GT	./.
chr1	24463619	.	A	.	.	LowGQX	END=24463630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24463631	.	A	.	.	LowGQX	.	GT	./.
chr1	24463632	.	G	.	.	LowGQX	END=24463745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24463746	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	24463747	.	T	.	.	LowGQX	END=24463785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24463786	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	24463787	.	C	.	.	LowGQX	END=24463793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24463794	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	24463795	.	C	.	.	LowGQX	END=24463800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24463801	.	T	.	.	LowGQX	.	GT	./.
chr1	24465070	.	A	.	.	LowGQX	END=24465206	GT	./.
chr1	24469502	.	T	.	.	LowGQX	END=24469601	GT	./.
chr1	24483618	.	G	.	.	LowGQX	END=24483856	GT	./.
chr1	24483857	.	T	.	.	LowGQX	END=24483989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24483990	.	C	.	.	LowGQX	END=24484156	GT	./.
chr1	24484157	.	G	.	.	LowGQX	END=24484277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24484278	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	24484279	.	C	.	.	LowGQX	END=24484361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24484362	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	24484363	.	G	.	.	LowGQX	END=24484383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	24485535	.	G	.	.	LowGQX	END=24485674	GT	./.
chr1	24485962	.	A	.	.	LowGQX	END=24486003	GT	./.
chr1	24486004	.	G	.	.	LowGQX	END=24486041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24486042	.	C	.	.	LowGQX	.	GT	./.
chr1	24486043	.	A	.	.	LowGQX	END=24486049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24486050	.	C	.	.	LowGQX	.	GT	./.
chr1	24486051	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24486052	.	G	.	.	LowGQX	.	GT	./.
chr1	24486053	.	T	.	.	LowGQX	END=24486054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24486055	.	G	.	.	LowGQX	END=24486057	GT	./.
chr1	24486058	.	T	.	.	LowGQX	END=24486060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24486061	.	G	.	.	LowGQX	END=24486062	GT	./.
chr1	24486063	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24486064	.	G	.	.	LowGQX	END=24486065	GT	./.
chr1	24486066	.	C	.	.	LowGQX	END=24486084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24486085	.	C	.	.	LowGQX	.	GT	./.
chr1	24486086	.	T	.	.	LowGQX	END=24486103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24486104	.	G	.	.	LowGQX	.	GT	./.
chr1	24486105	.	G	.	.	LowGQX	END=24486125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24487905	.	G	.	.	LowGQX	END=24488176	GT	./.
chr1	24495905	.	A	.	.	LowGQX	END=24496093	GT	./.
chr1	24507219	.	A	.	.	LowGQX	END=24507342	GT	./.
chr1	24507343	.	C	.	.	LowGQX	END=24507346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24513600	.	A	.	.	LowGQX	END=24513759	GT	./.
chr1	24646000	.	G	.	.	LowGQX	END=24646099	GT	./.
chr1	24649542	.	A	.	.	LowGQX	END=24649641	GT	./.
chr1	24657914	.	A	.	.	LowGQX	END=24657940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24657941	.	A	.	.	LowGQX	.	GT	./.
chr1	24657942	.	A	.	.	LowGQX	END=24657944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24657945	.	A	.	.	LowGQX	.	GT	./.
chr1	24657946	.	C	.	.	LowGQX	END=24657963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24657964	.	A	.	.	LowGQX	.	GT	./.
chr1	24657965	.	T	.	.	LowGQX	END=24657993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24657994	.	G	.	.	LowGQX	.	GT	./.
chr1	24657995	.	A	.	.	LowGQX	END=24657997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24657998	.	A	.	.	LowGQX	.	GT	./.
chr1	24657999	.	C	.	.	LowGQX	END=24658009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24658010	.	A	.	.	LowGQX	.	GT	./.
chr1	24658011	.	A	.	.	LowGQX	END=24658018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24658019	.	A	.	.	LowGQX	.	GT	./.
chr1	24658020	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24658021	.	A	.	.	LowGQX	.	GT	./.
chr1	24658022	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24658023	.	C	.	.	LowGQX	.	GT	./.
chr1	24658024	.	T	.	.	LowGQX	END=24658031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24658032	.	A	.	.	LowGQX	.	GT	./.
chr1	24658033	.	G	.	.	LowGQX	END=24658036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24658037	.	A	.	.	LowGQX	.	GT	./.
chr1	24658038	.	T	.	.	LowGQX	END=24658040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24658041	.	T	.	.	LowGQX	.	GT	./.
chr1	24658042	.	G	.	.	LowGQX	END=24658053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24658054	.	A	.	.	LowGQX	.	GT	./.
chr1	24658055	.	G	.	.	LowGQX	END=24658059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24658060	.	T	.	.	LowGQX	.	GT	./.
chr1	24658061	.	G	.	.	LowGQX	END=24658062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24658063	.	C	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	24658064	.	A	.	.	LowGQX	END=24658065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24658066	.	T	.	.	LowGQX	.	GT	./.
chr1	24658067	.	G	.	.	LowGQX	END=24658068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24658069	.	T	.	.	LowGQX	.	GT	./.
chr1	24658070	.	G	.	.	LowGQX	END=24658073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24658074	.	C	.	.	LowGQX	END=24658075	GT	./.
chr1	24658076	.	T	.	.	LowGQX	END=24658094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24658095	.	A	.	.	LowGQX	.	GT	./.
chr1	24658096	.	C	.	.	LowGQX	END=24658097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24658098	.	A	.	.	LowGQX	.	GT	./.
chr1	24658099	.	C	.	.	LowGQX	END=24658104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24661116	.	T	.	.	LowGQX	END=24661215	GT	./.
chr1	24662970	.	A	.	.	LowGQX	END=24663319	GT	./.
chr1	24663555	.	T	.	.	LowGQX	END=24663654	GT	./.
chr1	24664124	.	A	.	.	LowGQX	END=24664158	GT	./.
chr1	24664159	.	C	.	.	LowGQX	END=24664222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664223	.	A	.	.	LowGQX	.	GT	./.
chr1	24664224	.	C	.	.	LowGQX	END=24664281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664480	.	A	.	.	LowGQX	END=24664482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664483	.	G	.	.	LowGQX	END=24664484	GT	./.
chr1	24664485	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664486	.	T	.	.	LowGQX	.	GT	./.
chr1	24664487	.	G	.	.	LowGQX	END=24664489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664490	.	G	.	.	LowGQX	.	GT	./.
chr1	24664491	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664492	.	T	.	.	LowGQX	END=24664495	GT	./.
chr1	24664496	.	T	.	.	LowGQX	END=24664502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664503	.	G	.	.	LowGQX	.	GT	./.
chr1	24664504	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664505	.	C	.	.	LowGQX	.	GT	./.
chr1	24664506	.	A	.	.	LowGQX	END=24664508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664509	.	G	.	.	LowGQX	.	GT	./.
chr1	24664510	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664511	.	G	.	.	LowGQX	.	GT	./.
chr1	24664512	.	A	.	.	LowGQX	END=24664514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664515	.	G	.	.	LowGQX	.	GT	./.
chr1	24664516	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664517	.	C	.	.	LowGQX	END=24664519	GT	./.
chr1	24664520	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664521	.	G	.	.	LowGQX	END=24664522	GT	./.
chr1	24664523	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664524	.	G	.	.	LowGQX	.	GT	./.
chr1	24664525	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664526	.	G	.	.	LowGQX	.	GT	./.
chr1	24664527	.	C	.	.	LowGQX	END=24664528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664529	.	G	.	.	LowGQX	END=24664530	GT	./.
chr1	24664531	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664532	.	G	.	.	LowGQX	END=24664534	GT	./.
chr1	24664535	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664536	.	T	.	.	LowGQX	.	GT	./.
chr1	24664537	.	T	.	.	LowGQX	END=24664539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664540	.	G	.	.	LowGQX	END=24664541	GT	./.
chr1	24664542	.	A	.	.	LowGQX	END=24664543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664544	.	G	.	.	LowGQX	.	GT	./.
chr1	24664545	.	C	.	.	LowGQX	END=24664549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664550	.	G	.	.	LowGQX	END=24664552	GT	./.
chr1	24664553	.	T	.	.	LowGQX	END=24664555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664556	.	C	.	.	LowGQX	END=24664559	GT	./.
chr1	24664560	.	C	.	.	LowGQX	END=24664563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664564	.	C	.	.	LowGQX	END=24664565	GT	./.
chr1	24664566	.	A	.	.	LowGQX	END=24664567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664568	.	T	.	.	LowGQX	END=24664569	GT	./.
chr1	24664570	.	C	.	.	LowGQX	END=24664573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24664574	.	G	.	.	LowGQX	END=24664595	GT	./.
chr1	24666156	.	A	.	.	LowGQX	END=24666255	GT	./.
chr1	24668603	.	A	.	.	LowGQX	END=24668711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24668712	.	T	.	.	LowGQX	END=24668765	GT	./.
chr1	24669174	.	T	.	.	LowGQX	END=24669260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24669261	.	T	.	.	LowGQX	END=24669273	GT	./.
chr1	24669380	.	A	.	.	LowGQX	.	GT	./.
chr1	24669381	.	G	.	.	LowGQX	END=24669384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24669385	.	T	.	2.30	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0:60:0
chr1	24669386	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24669387	.	A	.	.	LowGQX	END=24669388	GT	./.
chr1	24669389	.	G	.	.	LowGQX	END=24669396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24669397	.	T	.	.	LowGQX	.	GT	./.
chr1	24669398	.	G	.	.	LowGQX	END=24669401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24669402	.	T	.	.	LowGQX	.	GT	./.
chr1	24669403	.	C	.	.	LowGQX	END=24669408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24669409	.	T	.	.	LowGQX	.	GT	./.
chr1	24669410	.	C	.	.	LowGQX	END=24669411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24669412	.	G	.	.	LowGQX	.	GT	./.
chr1	24669413	.	G	.	.	LowGQX	END=24669450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24669451	.	T	.	.	LowGQX	.	GT	./.
chr1	24669452	.	G	.	.	LowGQX	END=24669457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24669458	.	G	.	.	LowGQX	.	GT	./.
chr1	24669459	.	C	.	.	LowGQX	END=24669470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24669471	.	T	.	.	LowGQX	END=24669517	GT	./.
chr1	24671355	.	T	.	.	LowGQX	END=24671454	GT	./.
chr1	24673038	.	C	.	.	LowGQX	END=24673137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24673951	.	T	.	.	LowGQX	END=24674050	GT	./.
chr1	24676531	.	C	.	.	LowGQX	END=24676630	GT	./.
chr1	24680862	.	A	.	.	LowGQX	END=24680914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24680915	.	C	T	9.30	LowGQX	BaseQRankSum=-1.026;DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-1.026;SB=-30.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:38.75:39,0,39:60:9:0.500
chr1	24680916	.	G	.	.	LowGQX	END=24680980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24684661	.	T	.	.	LowGQX	END=24684894	GT	./.
chr1	24684895	.	G	.	.	LowGQX	END=24684906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24684907	.	T	.	.	LowGQX	END=24684908	GT	./.
chr1	24684909	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24684910	.	T	.	.	LowGQX	.	GT	./.
chr1	24684911	.	A	.	.	LowGQX	END=24684916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24684917	.	A	.	.	LowGQX	END=24684918	GT	./.
chr1	24684919	.	C	.	.	LowGQX	END=24684931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24684932	.	A	.	.	LowGQX	END=24684933	GT	./.
chr1	24684934	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24684935	.	T	.	.	LowGQX	END=24684936	GT	./.
chr1	24684937	.	C	.	.	LowGQX	END=24684938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24684939	.	A	.	.	LowGQX	.	GT	./.
chr1	24684940	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24684941	.	A	.	.	LowGQX	END=24684943	GT	./.
chr1	24684944	.	C	.	.	LowGQX	END=24684946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24684947	.	G	.	.	LowGQX	.	GT	./.
chr1	24684948	.	A	.	.	LowGQX	END=24684954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24684955	.	T	.	.	LowGQX	END=24684958	GT	./.
chr1	24684959	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24684960	.	C	.	.	LowGQX	.	GT	./.
chr1	24684961	.	T	.	.	LowGQX	END=24684963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24684964	.	G	.	.	LowGQX	END=24684965	GT	./.
chr1	24684966	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24684967	.	A	.	.	LowGQX	.	GT	./.
chr1	24684968	.	T	.	.	LowGQX	END=24684979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24684980	.	G	.	.	LowGQX	.	GT	./.
chr1	24684981	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24684982	.	T	.	.	LowGQX	.	GT	./.
chr1	24684983	.	G	.	.	LowGQX	END=24684988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24684989	.	G	.	.	LowGQX	.	GT	./.
chr1	24684990	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24684991	.	T	.	.	LowGQX	END=24684992	GT	./.
chr1	24684993	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24684994	.	G	.	.	LowGQX	.	GT	./.
chr1	24684995	.	C	.	.	LowGQX	END=24684996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24684997	.	G	.	.	LowGQX	END=24684999	GT	./.
chr1	24685000	.	G	.	.	LowGQX	END=24685005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24685006	.	A	.	.	LowGQX	END=24685007	GT	./.
chr1	24685008	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24685009	.	T	.	.	LowGQX	END=24685010	GT	./.
chr1	24685011	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24685012	.	C	.	.	LowGQX	.	GT	./.
chr1	24685013	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24685014	.	T	.	.	LowGQX	.	GT	./.
chr1	24685015	.	T	.	.	LowGQX	END=24685016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24685017	.	A	.	.	LowGQX	.	GT	./.
chr1	24685018	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24685019	.	C	.	.	LowGQX	.	GT	./.
chr1	24685020	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24685021	.	T	.	.	LowGQX	.	GT	./.
chr1	24685022	.	G	.	.	LowGQX	END=24685023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24685024	.	G	.	.	LowGQX	.	GT	./.
chr1	24685025	.	T	.	.	LowGQX	END=24685028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24685029	.	A	.	.	LowGQX	.	GT	./.
chr1	24685030	.	T	.	.	LowGQX	END=24685038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24685039	.	A	.	.	LowGQX	.	GT	./.
chr1	24685040	.	A	.	.	LowGQX	END=24685042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24685043	.	G	.	.	LowGQX	.	GT	./.
chr1	24685044	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24685045	.	G	.	.	LowGQX	END=24685111	GT	./.
chr1	24687339	.	A	.	.	LowGQX	END=24687533	GT	./.
chr1	24690674	.	G	.	.	LowGQX	END=24690861	GT	./.
chr1	24695817	.	A	.	.	LowGQX	END=24695916	GT	./.
chr1	24696160	.	T	.	.	LowGQX	END=24696331	GT	./.
chr1	24700190	.	A	.	.	LowGQX	END=24700302	GT	./.
chr1	24706104	.	A	.	.	LowGQX	END=24706315	GT	./.
chr1	24710390	.	A	.	.	LowGQX	END=24710446	GT	./.
chr1	24710447	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24710448	.	G	.	.	LowGQX	.	GT	./.
chr1	24710449	.	T	.	.	LowGQX	END=24710453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24710454	.	G	.	.	LowGQX	.	GT	./.
chr1	24710455	.	G	.	.	LowGQX	END=24710466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24710467	.	G	.	.	LowGQX	.	GT	./.
chr1	24710468	.	T	.	.	LowGQX	END=24710469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24710470	.	G	.	.	LowGQX	.	GT	./.
chr1	24710471	.	A	.	.	LowGQX	END=24710472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24710473	.	C	.	.	LowGQX	.	GT	./.
chr1	24710474	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24710475	.	C	.	.	LowGQX	.	GT	./.
chr1	24710476	.	A	.	.	LowGQX	END=24710482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24710483	.	G	.	.	LowGQX	END=24710484	GT	./.
chr1	24710485	.	G	.	.	LowGQX	END=24710489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24710490	.	C	.	.	LowGQX	.	GT	./.
chr1	24710491	.	A	.	.	LowGQX	END=24710495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24718050	.	C	.	.	LowGQX	END=24718169	GT	./.
chr1	24727793	.	G	.	.	LowGQX	END=24727892	GT	./.
chr1	24746035	.	A	.	.	LowGQX	END=24746054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24746055	.	C	.	.	LowGQX	.	GT	./.
chr1	24746056	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24746057	.	C	.	.	LowGQX	.	GT	./.
chr1	24746058	.	A	.	.	LowGQX	END=24746069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24746070	.	G	.	.	LowGQX	.	GT	./.
chr1	24746071	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24746072	.	A	.	.	LowGQX	END=24746073	GT	./.
chr1	24746074	.	C	.	.	LowGQX	END=24746134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24766647	.	G	.	.	LowGQX	END=24766746	GT	./.
chr1	24768543	.	A	.	.	LowGQX	END=24768554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24768555	.	A	.	.	LowGQX	.	GT	./.
chr1	24768556	.	C	.	.	LowGQX	END=24768588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24768589	.	C	.	.	LowGQX	.	GT	./.
chr1	24768590	.	T	.	.	LowGQX	END=24768623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24768624	.	T	.	.	LowGQX	.	GT	./.
chr1	24768625	.	C	.	.	LowGQX	END=24768641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24768642	.	A	.	.	LowGQX	.	GT	./.
chr1	24768643	.	G	.	.	LowGQX	END=24768653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24768654	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	24768655	.	C	.	.	LowGQX	END=24768704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24768705	.	T	.	.	LowGQX	END=24768706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	24768707	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	24768708	.	C	.	.	LowGQX	END=24768718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	24771655	.	C	.	.	LowGQX	END=24771754	GT	./.
chr1	24775969	.	A	.	.	LowGQX	END=24776118	GT	./.
chr1	24779896	.	A	.	.	LowGQX	END=24779996	GT	./.
chr1	24780456	.	G	.	.	LowGQX	END=24780496	GT	./.
chr1	24780497	.	G	.	.	LowGQX	END=24780511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24780512	.	T	.	.	LowGQX	END=24780513	GT	./.
chr1	24780514	.	A	.	.	LowGQX	END=24780517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24780518	.	T	.	.	LowGQX	.	GT	./.
chr1	24780519	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24780520	.	C	.	.	LowGQX	.	GT	./.
chr1	24780521	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24780522	.	T	.	.	LowGQX	.	GT	./.
chr1	24780523	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24780524	.	T	.	.	LowGQX	END=24780526	GT	./.
chr1	24780527	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24780528	.	T	.	.	LowGQX	.	GT	./.
chr1	24780529	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24780530	.	T	.	.	LowGQX	.	GT	./.
chr1	24780531	.	T	.	.	LowGQX	END=24780536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24780537	.	G	.	.	LowGQX	END=24780588	GT	./.
chr1	24780589	.	T	.	.	LowGQX	END=24780593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24780594	.	G	.	.	LowGQX	END=24780595	GT	./.
chr1	24780596	.	A	.	.	LowGQX	END=24780597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24780598	.	C	.	.	LowGQX	END=24780599	GT	./.
chr1	24780600	.	T	.	.	LowGQX	END=24780601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24780602	.	G	.	.	LowGQX	END=24780605	GT	./.
chr1	24780606	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24780607	.	C	.	.	LowGQX	END=24780608	GT	./.
chr1	24780609	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24780610	.	G	.	.	LowGQX	END=24780613	GT	./.
chr1	24780614	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24780615	.	C	.	.	LowGQX	.	GT	./.
chr1	24782626	.	A	.	.	LowGQX	END=24782642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24782643	.	T	.	.	LowGQX	END=24782727	GT	./.
chr1	24782728	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24782729	.	G	.	.	LowGQX	.	GT	./.
chr1	24782730	.	T	.	.	LowGQX	END=24782742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24782743	.	A	.	.	LowGQX	.	GT	./.
chr1	24782744	.	A	.	.	LowGQX	END=24782765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24784224	.	C	.	.	LowGQX	END=24784323	GT	./.
chr1	24785373	.	T	.	.	LowGQX	END=24785472	GT	./.
chr1	24786899	.	A	.	.	LowGQX	END=24787052	GT	./.
chr1	24790514	.	A	.	.	LowGQX	END=24790613	GT	./.
chr1	24792487	.	T	.	.	LowGQX	END=24792586	GT	./.
chr1	24795474	.	A	.	.	LowGQX	END=24795677	GT	./.
chr1	24840861	.	T	.	.	LowGQX	END=24841059	GT	./.
chr1	24857706	.	A	.	.	LowGQX	END=24857778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24857779	.	A	.	.	LowGQX	END=24857883	GT	./.
chr1	24859571	.	A	.	.	LowGQX	END=24859581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24859582	.	T	.	.	LowGQX	.	GT	./.
chr1	24859583	.	C	.	.	LowGQX	END=24859591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24859592	.	T	.	.	LowGQX	.	GT	./.
chr1	24859593	.	G	.	.	LowGQX	END=24859599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24859600	.	A	.	.	LowGQX	END=24859746	GT	./.
chr1	24861531	.	C	.	.	LowGQX	END=24861769	GT	./.
chr1	24921913	.	A	.	.	LowGQX	END=24922012	GT	./.
chr1	24927424	.	T	.	.	LowGQX	END=24927523	GT	./.
chr1	24932095	.	A	.	.	LowGQX	END=24932096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932097	.	G	.	.	LowGQX	END=24932098	GT	./.
chr1	24932099	.	A	.	.	LowGQX	END=24932102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932103	.	G	.	.	LowGQX	.	GT	./.
chr1	24932104	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932105	.	G	.	.	LowGQX	END=24932106	GT	./.
chr1	24932107	.	A	.	.	LowGQX	END=24932108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932109	.	G	.	.	LowGQX	END=24932112	GT	./.
chr1	24932113	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932114	.	G	.	.	LowGQX	END=24932115	GT	./.
chr1	24932116	.	G	.	.	LowGQX	END=24932117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24932118	.	A	.	.	LowGQX	.	GT	./.
chr1	24932119	.	C	.	.	LowGQX	END=24932121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24932122	.	G	.	.	LowGQX	.	GT	./.
chr1	24932123	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24932124	.	G	.	.	LowGQX	END=24932125	GT	./.
chr1	24932126	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	24932127	.	C	.	.	LowGQX	.	GT	./.
chr1	24932128	.	A	.	.	LowGQX	END=24932129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24932130	.	G	.	.	LowGQX	END=24932132	GT	./.
chr1	24932133	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24932134	.	C	.	.	LowGQX	.	GT	./.
chr1	24932135	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24932136	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	24932137	.	A	.	.	LowGQX	END=24932138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24932139	.	G	.	.	LowGQX	END=24932140	GT	./.
chr1	24932141	.	C	.	.	LowGQX	END=24932145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24932146	.	G	.	.	LowGQX	.	GT	./.
chr1	24932147	.	C	.	.	LowGQX	END=24932151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24932152	.	T	.	.	LowGQX	.	GT	./.
chr1	24932153	.	C	.	.	LowGQX	END=24932156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24932157	.	C	.	.	LowGQX	.	GT	./.
chr1	24932158	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24932159	.	T	.	.	LowGQX	.	GT	./.
chr1	24932160	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24932161	.	G	.	.	LowGQX	END=24932163	GT	./.
chr1	24932164	.	C	.	.	LowGQX	END=24932168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24932169	.	C	.	.	LowGQX	END=24932170	GT	./.
chr1	24932171	.	G	.	.	LowGQX	END=24932174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932175	.	C	.	.	LowGQX	.	GT	./.
chr1	24932176	.	G	.	.	LowGQX	END=24932180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932181	.	C	.	.	LowGQX	.	GT	./.
chr1	24932182	.	C	.	.	LowGQX	END=24932183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932184	.	A	.	.	LowGQX	.	GT	./.
chr1	24932185	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932186	.	A	.	.	LowGQX	.	GT	./.
chr1	24932187	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932188	.	C	.	.	LowGQX	.	GT	./.
chr1	24932189	.	C	.	.	LowGQX	END=24932190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932191	.	G	.	.	LowGQX	.	GT	./.
chr1	24932192	.	C	.	.	LowGQX	END=24932194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932195	.	C	.	.	LowGQX	.	GT	./.
chr1	24932196	.	T	.	.	LowGQX	END=24932199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932200	.	A	.	.	LowGQX	.	GT	./.
chr1	24932201	.	C	.	.	LowGQX	END=24932207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932208	.	T	.	.	LowGQX	.	GT	./.
chr1	24932209	.	C	.	.	LowGQX	END=24932210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932211	.	T	.	.	LowGQX	.	GT	./.
chr1	24932212	.	G	.	.	LowGQX	END=24932216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932217	.	C	.	.	LowGQX	.	GT	./.
chr1	24932218	.	G	.	.	LowGQX	END=24932222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932223	.	G	.	.	LowGQX	.	GT	./.
chr1	24932224	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932225	.	T	.	.	LowGQX	.	GT	./.
chr1	24932226	.	G	.	.	LowGQX	END=24932231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932232	.	G	.	.	LowGQX	.	GT	./.
chr1	24932233	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932234	.	G	.	.	LowGQX	END=24932235	GT	./.
chr1	24932236	.	T	.	.	LowGQX	END=24932239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24932240	.	C	.	.	LowGQX	.	GT	./.
chr1	24969719	.	G	.	.	LowGQX	END=24969873	GT	./.
chr1	24969874	.	G	.	.	LowGQX	END=24969878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24972470	.	T	.	.	LowGQX	END=24972477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24972478	.	A	.	.	LowGQX	END=24972479	GT	./.
chr1	24972480	.	A	.	.	LowGQX	END=24972484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24972485	.	C	.	.	LowGQX	END=24972569	GT	./.
chr1	24973156	.	A	.	.	LowGQX	END=24973282	GT	./.
chr1	24975348	.	A	.	.	LowGQX	END=24975537	GT	./.
chr1	24976460	.	A	.	.	LowGQX	END=24976579	GT	./.
chr1	24977898	.	A	.	.	LowGQX	END=24978105	GT	./.
chr1	24978923	.	A	.	.	LowGQX	END=24978959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24978960	.	C	.	.	LowGQX	END=24979121	GT	./.
chr1	24979402	.	A	.	.	LowGQX	END=24979525	GT	./.
chr1	24980766	.	T	.	.	LowGQX	END=24980865	GT	./.
chr1	24981344	.	A	.	.	LowGQX	END=24981622	GT	./.
chr1	24987201	.	C	.	.	LowGQX	END=24987300	GT	./.
chr1	24987795	.	T	.	.	LowGQX	END=24987894	GT	./.
chr1	24989149	.	A	.	.	LowGQX	END=24989297	GT	./.
chr1	24989645	.	T	.	.	LowGQX	END=24989744	GT	./.
chr1	24993252	.	T	.	.	LowGQX	END=24993418	GT	./.
chr1	24995612	.	A	.	.	LowGQX	END=24995665	GT	./.
chr1	24995666	.	C	.	.	LowGQX	END=24995697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24995698	.	A	.	.	LowGQX	.	GT	./.
chr1	24995699	.	C	.	.	LowGQX	END=24995723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24995724	.	C	.	.	LowGQX	.	GT	./.
chr1	24995725	.	T	.	.	LowGQX	END=24995751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24995752	.	A	.	.	LowGQX	.	GT	./.
chr1	24995753	.	C	.	.	LowGQX	END=24995771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24995772	.	G	.	.	LowGQX	.	GT	./.
chr1	24995773	.	G	.	.	LowGQX	END=24995806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24995807	.	A	.	.	LowGQX	.	GT	./.
chr1	24995808	.	G	.	.	LowGQX	END=24995815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	24995816	.	G	.	.	LowGQX	.	GT	./.
chr1	24995817	.	T	.	.	LowGQX	END=24995863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24995864	.	T	.	.	LowGQX	.	GT	./.
chr1	24995865	.	C	.	.	LowGQX	END=24995931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24995932	.	A	.	.	LowGQX	END=24995944	GT	./.
chr1	24995945	.	C	.	.	LowGQX	END=24996080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996609	.	A	.	.	LowGQX	END=24996649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996650	.	A	.	.	LowGQX	.	GT	./.
chr1	24996651	.	T	.	.	LowGQX	END=24996678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996679	.	A	.	.	LowGQX	.	GT	./.
chr1	24996680	.	G	.	.	LowGQX	END=24996691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996692	.	A	.	.	LowGQX	.	GT	./.
chr1	24996693	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996694	.	A	.	.	LowGQX	.	GT	./.
chr1	24996695	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996696	.	C	.	.	LowGQX	END=24996697	GT	./.
chr1	24996698	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996699	.	C	.	.	LowGQX	.	GT	./.
chr1	24996700	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996701	.	A	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	24996702	.	G	.	.	LowGQX	END=24996703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996704	.	A	.	.	LowGQX	.	GT	./.
chr1	24996705	.	C	.	.	LowGQX	END=24996706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996707	.	T	.	.	LowGQX	.	GT	./.
chr1	24996708	.	C	.	.	LowGQX	END=24996709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996710	.	A	.	.	LowGQX	.	GT	./.
chr1	24996711	.	T	.	.	LowGQX	END=24996720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996721	.	A	.	.	LowGQX	END=24996723	GT	./.
chr1	24996724	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996725	.	T	.	.	LowGQX	.	GT	./.
chr1	24996726	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996727	.	A	.	.	LowGQX	.	GT	./.
chr1	24996728	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996729	.	T	.	.	LowGQX	.	GT	./.
chr1	24996730	.	C	.	.	LowGQX	END=24996732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996733	.	C	.	.	LowGQX	.	GT	./.
chr1	24996734	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996735	.	T	.	.	LowGQX	.	GT	./.
chr1	24996736	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996737	.	T	.	.	LowGQX	.	GT	./.
chr1	24996738	.	A	.	.	LowGQX	END=24996739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996740	.	A	.	.	LowGQX	.	GT	./.
chr1	24996741	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	24996742	.	A	.	.	LowGQX	END=24996745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996746	.	G	.	.	LowGQX	END=24996747	GT	./.
chr1	24996748	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996749	.	A	.	.	LowGQX	.	GT	./.
chr1	24996750	.	C	.	.	LowGQX	END=24996751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996752	.	A	.	.	LowGQX	.	GT	./.
chr1	24996753	.	G	.	.	LowGQX	END=24996754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996755	.	T	.	.	LowGQX	.	GT	./.
chr1	24996756	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996757	.	T	.	.	LowGQX	END=24996758	GT	./.
chr1	24996759	.	C	.	.	LowGQX	END=24996760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996761	.	G	.	.	LowGQX	END=24996762	GT	./.
chr1	24996763	.	T	.	.	LowGQX	END=24996764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996765	.	A	.	.	LowGQX	.	GT	./.
chr1	24996766	.	A	.	.	LowGQX	END=24996767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24996768	.	A	.	.	LowGQX	END=24996777	GT	./.
chr1	24996778	.	G	.	.	LowGQX	END=24996808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	24997875	.	A	.	.	LowGQX	END=24998088	GT	./.
chr1	24998671	.	A	.	.	LowGQX	END=24998722	GT	./.
chr1	24998723	.	G	.	.	LowGQX	END=24998779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25072031	.	C	.	.	LowGQX	END=25072088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25072089	.	A	.	.	LowGQX	.	GT	./.
chr1	25072090	.	G	.	.	LowGQX	END=25072107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25072108	.	T	.	.	LowGQX	.	GT	./.
chr1	25072109	.	T	.	.	LowGQX	END=25072119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25072120	.	A	.	.	LowGQX	.	GT	./.
chr1	25072121	.	G	.	.	LowGQX	END=25072127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25072128	.	C	.	.	LowGQX	END=25072130	GT	./.
chr1	25098292	.	T	.	.	LowGQX	END=25098300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25098301	.	G	.	.	LowGQX	.	GT	./.
chr1	25098302	.	A	.	.	LowGQX	END=25098324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25098325	.	A	.	.	LowGQX	.	GT	./.
chr1	25098326	.	G	.	.	LowGQX	END=25098335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25098336	.	A	.	.	LowGQX	.	GT	./.
chr1	25098337	.	A	.	.	LowGQX	END=25098340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25098341	.	C	.	5.68	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr1	25098342	.	T	.	.	LowGQX	END=25098344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25098345	.	G	.	.	LowGQX	END=25098346	GT	./.
chr1	25098347	.	G	.	.	LowGQX	END=25098353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25098354	.	A	.	.	LowGQX	.	GT	./.
chr1	25098355	.	A	.	.	LowGQX	END=25098366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25098367	.	C	.	.	LowGQX	.	GT	./.
chr1	25098368	.	C	.	.	LowGQX	END=25098382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25098383	.	G	.	.	LowGQX	.	GT	./.
chr1	25098384	.	G	.	.	LowGQX	END=25098390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25098391	.	T	.	.	LowGQX	.	GT	./.
chr1	25124231	.	A	.	.	LowGQX	END=25124390	GT	./.
chr1	25140523	.	A	.	.	LowGQX	END=25140712	GT	./.
chr1	25153499	.	A	.	.	LowGQX	END=25153528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25153529	.	G	.	.	LowGQX	END=25153537	GT	./.
chr1	25153538	.	A	.	.	LowGQX	END=25153539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25153540	.	T	.	.	LowGQX	.	GT	./.
chr1	25153541	.	G	.	.	LowGQX	END=25153553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25153554	.	T	.	.	LowGQX	.	GT	./.
chr1	25153555	.	C	.	.	LowGQX	END=25153569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25153570	.	T	.	.	LowGQX	.	GT	./.
chr1	25153571	.	G	.	.	LowGQX	END=25153609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25166349	.	A	.	.	LowGQX	END=25166534	GT	./.
chr1	25167262	.	A	.	.	LowGQX	END=25167382	GT	./.
chr1	25167383	.	G	.	.	LowGQX	END=25167415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25167416	.	A	.	.	LowGQX	.	GT	./.
chr1	25167417	.	C	.	.	LowGQX	END=25167430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25228611	.	G	.	.	PASS	END=25228631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	25228632	.	G	.	.	PASS	END=25228683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	25228684	.	T	.	.	PASS	END=25228726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	25228727	.	G	.	.	PASS	END=25228877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	25228878	.	G	.	.	PASS	END=25229138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	25229139	.	G	.	.	PASS	END=25229159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	25233748	.	A	.	.	PASS	END=25233774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	25233775	.	G	.	.	PASS	END=25233894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	25233895	.	C	.	.	PASS	END=25233910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	25245669	.	G	.	.	PASS	END=25245674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	25245675	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:63:60
chr1	25245676	.	C	.	.	PASS	END=25245686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	25245687	.	C	.	.	PASS	END=25245688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:66:60
chr1	25245689	.	T	.	.	PASS	END=25245690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	25245691	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:72:60
chr1	25245692	.	T	.	.	PASS	END=25245828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:79:60
chr1	25245829	.	C	.	.	PASS	END=25245865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:60
chr1	25245866	.	T	.	.	PASS	END=25245867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:72:60
chr1	25245868	.	G	.	.	PASS	END=25245872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	25245873	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:46:60
chr1	25245874	.	T	.	.	PASS	END=25245878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	25245879	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:48:60
chr1	25245880	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:66:60
chr1	25245881	.	T	.	.	PASS	END=25245887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	25254063	.	A	.	.	PASS	END=25254193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	25254194	.	C	.	.	PASS	END=25254204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	25254205	.	T	.	.	PASS	END=25254223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	25255496	.	C	.	.	LowGQX	END=25255510	GT	./.
chr1	25255511	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25255512	.	T	.	.	LowGQX	.	GT	./.
chr1	25255513	.	C	.	.	LowGQX	END=25255519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25255520	.	T	.	.	LowGQX	.	GT	./.
chr1	25255521	.	C	.	.	LowGQX	END=25255532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25255533	.	T	.	.	LowGQX	.	GT	./.
chr1	25255534	.	T	.	.	LowGQX	END=25255536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25255537	.	G	.	.	LowGQX	.	GT	./.
chr1	25255538	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25255539	.	A	.	.	LowGQX	.	GT	./.
chr1	25255540	.	C	.	.	LowGQX	END=25255573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25255574	.	G	.	.	LowGQX	END=25255575	GT	./.
chr1	25255576	.	G	.	.	LowGQX	END=25255592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25255593	.	G	.	.	LowGQX	.	GT	./.
chr1	25255594	.	C	.	.	LowGQX	END=25255598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25255599	.	T	.	.	LowGQX	.	GT	./.
chr1	25255600	.	C	.	.	LowGQX	END=25255609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25255610	.	T	.	.	LowGQX	.	GT	./.
chr1	25255611	.	T	.	.	LowGQX	END=25255612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25255613	.	G	.	.	LowGQX	.	GT	./.
chr1	25255614	.	G	.	.	LowGQX	END=25255660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25255661	.	G	.	.	LowGQX	END=25255679	GT	./.
chr1	25255680	.	G	.	.	LowGQX	END=25255687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25255688	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	25255689	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25255690	.	T	.	.	LowGQX	.	GT	./.
chr1	25255691	.	T	.	.	LowGQX	END=25255707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25255708	.	A	.	.	LowGQX	.	GT	./.
chr1	25255709	.	C	.	.	LowGQX	END=25255710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25255711	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	25255712	.	G	.	.	LowGQX	END=25255728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25255729	.	G	.	.	LowGQX	END=25255738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	25255739	.	C	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	25255740	.	C	.	.	LowGQX	END=25255747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	25255748	.	C	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	25255749	.	G	.	.	LowGQX	END=25255753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	25255754	.	C	.	.	LowGQX	END=25255757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	25255758	.	A	.	.	LowGQX	END=25255759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	25255760	.	G	.	.	LowGQX	END=25255762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	25255763	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	25255764	.	G	.	.	PASS	END=25255765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	25255766	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	25255767	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	25255768	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	25255769	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	25255770	.	G	.	.	LowGQX	END=25255772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	25255773	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	25255774	.	G	.	.	LowGQX	END=25255775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	25255776	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	25255777	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	25255778	.	C	.	.	PASS	END=25255793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	25255794	.	A	.	.	LowGQX	END=25255796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	25255797	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:15:60
chr1	25255798	.	C	.	.	PASS	END=25255809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	25255810	.	A	.	.	LowGQX	END=25255811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	25255812	.	T	.	.	PASS	END=25255814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	25255815	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:5:60
chr1	25255816	.	G	.	.	PASS	END=25255817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	25255818	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	25255819	.	C	.	.	PASS	END=25255820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	25255821	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr1	25255822	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	25255823	.	C	.	.	PASS	END=25255827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	25255828	.	C	.	.	PASS	END=25255830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	25255831	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:3:60
chr1	25255832	.	G	.	.	PASS	END=25255837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	25255838	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:3:60
chr1	25255839	.	G	.	.	PASS	END=25255845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	25255846	.	A	.	.	PASS	END=25255847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	25255848	.	C	.	.	PASS	END=25255864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	25255865	.	A	.	.	LowGQX	END=25255866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:21:60
chr1	25255867	.	C	.	.	PASS	END=25255871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	25255872	.	T	.	.	PASS	END=25255873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	25255874	.	A	.	.	PASS	END=25255880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	25255881	.	A	.	.	PASS	END=25255882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	25255883	.	T	.	.	PASS	END=25255895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	25255896	.	A	.	.	PASS	END=25255899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	25255900	.	A	.	.	PASS	END=25255902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	25255903	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:1:60
chr1	25255904	.	C	.	.	PASS	END=25255913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	25255914	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	25255915	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	25255916	.	G	.	.	PASS	END=25255922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	25255923	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	25255924	.	G	.	.	PASS	END=25255927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	25255928	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	25255929	.	G	.	.	PASS	END=25255935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	25255936	.	G	.	.	PASS	END=25255940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:60
chr1	25255941	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:36:60
chr1	25255942	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:12:60
chr1	25255943	.	T	.	.	PASS	END=25255971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	25255972	.	G	.	.	PASS	END=25255978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	25255979	.	G	.	.	PASS	END=25255980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	25255981	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:45:60
chr1	25255982	.	C	.	.	PASS	END=25255983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	25255984	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr1	25255985	.	C	.	.	PASS	END=25255987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	25255988	.	A	.	.	PASS	END=25255989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:69:60
chr1	25255990	.	C	.	.	PASS	END=25256036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	25256037	.	C	.	.	PASS	END=25256119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	25256120	.	G	.	.	PASS	END=25256138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:59
chr1	25256139	.	A	.	.	PASS	END=25256164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:59
chr1	25256165	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:69:60
chr1	25256166	.	T	.	.	PASS	END=25256179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	25256180	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr1	25256181	.	G	.	.	PASS	END=25256187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	25256188	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:67:60
chr1	25256189	.	G	.	.	PASS	END=25256212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	25256213	.	C	.	.	PASS	END=25256223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	25256224	.	C	.	.	PASS	END=25256225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:69:60
chr1	25256226	.	C	.	.	PASS	END=25256231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	25256232	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:74:60
chr1	25256233	.	C	.	.	PASS	END=25256284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	25256285	.	G	.	.	PASS	END=25256317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	25256318	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:63:60
chr1	25256319	.	G	.	.	PASS	END=25256330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	25256331	.	C	.	.	PASS	END=25256342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	25256343	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr1	25256344	.	C	.	.	PASS	END=25256356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	25256357	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:12:60
chr1	25256358	.	A	.	.	PASS	END=25256362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	25290984	.	C	.	.	PASS	END=25291059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	25291060	.	C	.	.	PASS	END=25291076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	25291077	.	A	.	.	PASS	END=25291083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	25549755	.	G	.	.	LowGQX	END=25549924	GT	./.
chr1	25551491	.	A	.	.	LowGQX	END=25551593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25553928	.	C	.	.	LowGQX	END=25553930	GT	./.
chr1	25553931	.	A	.	.	LowGQX	END=25553934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25553935	.	T	.	.	LowGQX	END=25554027	GT	./.
chr1	25554607	.	A	.	.	LowGQX	END=25554728	GT	./.
chr1	25555487	.	A	.	.	LowGQX	END=25555616	GT	./.
chr1	25558502	.	T	.	.	LowGQX	END=25558592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25558593	.	A	.	.	LowGQX	.	GT	./.
chr1	25558594	.	C	.	.	LowGQX	END=25558598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25558599	.	A	.	.	LowGQX	.	GT	./.
chr1	25558600	.	T	.	.	LowGQX	END=25558637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25558638	.	C	.	.	LowGQX	.	GT	./.
chr1	25558639	.	G	.	.	LowGQX	END=25558650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25558651	.	C	.	.	LowGQX	.	GT	./.
chr1	25558652	.	C	.	.	LowGQX	END=25558689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25558690	.	T	.	.	LowGQX	.	GT	./.
chr1	25558691	.	G	.	.	LowGQX	END=25558704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25558897	.	A	.	.	LowGQX	END=25558912	GT	./.
chr1	25558913	.	G	.	.	LowGQX	END=25558972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25558973	.	C	.	.	LowGQX	.	GT	./.
chr1	25558974	.	T	.	.	LowGQX	END=25558975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25558976	.	C	.	.	LowGQX	.	GT	./.
chr1	25558977	.	C	.	.	LowGQX	END=25558996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25569078	.	T	.	.	LowGQX	END=25569198	GT	./.
chr1	25570033	.	A	.	.	LowGQX	END=25570132	GT	./.
chr1	25570663	.	T	.	.	LowGQX	END=25570762	GT	./.
chr1	25570891	.	G	.	.	LowGQX	END=25571021	GT	./.
chr1	25571022	.	C	.	.	LowGQX	END=25571034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25571583	.	A	.	.	LowGQX	END=25571794	GT	./.
chr1	25572933	.	A	.	.	LowGQX	END=25573040	GT	./.
chr1	25573041	.	G	.	.	LowGQX	END=25573048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25573049	.	C	.	.	LowGQX	.	GT	./.
chr1	25573050	.	C	.	.	LowGQX	END=25573096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25573097	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	25573098	.	C	.	.	LowGQX	END=25573099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25573100	.	A	.	.	LowGQX	.	GT	./.
chr1	25573101	.	C	.	.	LowGQX	END=25573112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25573113	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	25573114	.	C	.	.	LowGQX	END=25573130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25573131	.	A	.	.	LowGQX	.	GT	./.
chr1	25573132	.	G	.	.	LowGQX	END=25573160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25573161	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	25573162	.	T	.	.	LowGQX	END=25573168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25573169	.	T	.	.	LowGQX	END=25573456	GT	./.
chr1	25598988	.	G	.	.	PASS	END=25599005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:42
chr1	25599006	.	C	.	.	PASS	END=25599028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:42
chr1	25599029	.	C	.	.	PASS	END=25599056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:43
chr1	25599057	.	C	.	.	PASS	END=25599144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:43
chr1	25599145	.	C	.	.	PASS	END=25599156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:45
chr1	25599157	.	A	.	.	PASS	END=25599179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:45
chr1	25599180	.	T	.	.	PASS	END=25599187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:46
chr1	25599188	.	T	.	.	PASS	END=25599203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:90:47
chr1	25599204	.	A	C	280.01	SB	BaseQRankSum=0.186;DP=50;Dels=0.00;FS=8.144;HRun=0;HaplotypeScore=10.4689;MQ=49;MQ0=2;MQRankSum=-5.500;QD=5.60;ReadPosRankSum=-3.773;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:32,18:50:99:310,0,835:49:99:0.360
chr1	25599205	.	A	.	.	PASS	END=25599212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:49
chr1	25599213	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:45:50
chr1	25599214	.	A	.	.	PASS	END=25599215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:50
chr1	25599216	.	G	.	.	PASS	END=25599217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:54:51
chr1	25599218	.	G	.	.	PASS	END=25599223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:51
chr1	25599224	.	A	.	.	PASS	END=25599226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:50
chr1	25599227	.	A	.	.	PASS	END=25599228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:52
chr1	25599229	.	G	.	.	PASS	END=25599230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:52
chr1	25599231	.	G	.	.	PASS	END=25599232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:39:53
chr1	25599233	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:2:54
chr1	25599234	.	G	.	.	PASS	END=25599237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:54
chr1	25611013	.	A	.	.	PASS	END=25611046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:82:55
chr1	25611047	.	A	.	.	PASS	END=25611072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	25611073	.	A	.	.	PASS	END=25611103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	25611104	.	C	.	.	PASS	END=25611222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:52
chr1	25611223	.	C	.	.	PASS	END=25611253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:49
chr1	25611254	.	T	.	.	PASS	END=25611281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:45
chr1	25611282	.	T	.	.	PASS	END=25611292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:45
chr1	25611293	.	A	.	.	PASS	END=25611301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:44
chr1	25617081	.	T	.	.	PASS	END=25617095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	25617096	.	C	.	.	PASS	END=25617112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	25617113	.	C	.	.	PASS	END=25617130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	25617131	.	G	.	.	PASS	END=25617148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	25617149	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:51:60
chr1	25617150	.	G	.	.	PASS	END=25617159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	25617160	.	T	.	.	PASS	END=25617174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:60
chr1	25617175	.	G	.	.	PASS	END=25617283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:58
chr1	25617284	.	T	.	.	PASS	END=25617301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:58
chr1	25617302	.	G	.	.	PASS	END=25617308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:72:58
chr1	25617309	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:33:58
chr1	25617310	.	C	.	.	PASS	END=25617333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:58
chr1	25627386	.	C	.	.	PASS	END=25627439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	25627440	.	G	.	.	PASS	END=25627462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	25627463	.	C	.	.	PASS	END=25627558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	25627559	.	G	.	.	PASS	END=25627594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	25627595	.	G	.	.	PASS	END=25627601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	25627602	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:75:60
chr1	25627603	.	G	.	.	PASS	END=25627613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	25627614	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:99:60
chr1	25627615	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:69:60
chr1	25627616	.	C	.	.	PASS	END=25627632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr1	25627633	.	G	.	.	PASS	END=25627635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	25627960	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:75:47
chr1	25627961	.	C	.	.	PASS	END=25627990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:96:48
chr1	25627991	.	C	.	.	PASS	END=25628002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:52
chr1	25628003	.	G	.	.	PASS	END=25628046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:54
chr1	25628047	.	A	.	.	PASS	END=25628103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:58
chr1	25628104	.	A	.	.	PASS	END=25628176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:59
chr1	25628177	.	G	.	.	PASS	END=25628205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:58
chr1	25628206	.	C	.	.	PASS	END=25628228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:57
chr1	25629762	.	G	.	.	LowGQX	END=25629764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:39
chr1	25629765	.	G	.	.	LowGQX	END=25629775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:35
chr1	25629776	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:36
chr1	25629777	.	C	.	.	LowGQX	END=25629784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:36
chr1	25629785	.	C	.	.	LowGQX	END=25629794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:37
chr1	25629795	.	C	.	.	LowGQX	END=25629798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:40
chr1	25629799	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:41
chr1	25629800	.	T	.	.	LowGQX	END=25629801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:41
chr1	25629802	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:41
chr1	25629803	.	T	.	.	LowGQX	END=25629805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:41
chr1	25629806	.	T	.	.	PASS	END=25629807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:41
chr1	25629808	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:41
chr1	25629809	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:41
chr1	25629810	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:41
chr1	25629811	.	A	.	.	PASS	END=25629812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:41
chr1	25629813	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:43
chr1	25629814	.	C	.	.	PASS	END=25629815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:44
chr1	25629816	.	T	.	.	PASS	END=25629825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:49
chr1	25629826	.	G	.	.	PASS	END=25629849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:77:52
chr1	25629850	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:60:54
chr1	25629851	.	T	.	.	PASS	END=25629884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:54
chr1	25629885	.	T	.	.	PASS	END=25629966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:98:57
chr1	25629967	.	C	.	.	PASS	END=25629974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	25629975	.	C	.	.	PASS	END=25630001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	25633036	.	G	.	.	PASS	END=25633062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	25633063	.	G	.	.	PASS	END=25633078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	25633079	.	G	.	.	PASS	END=25633190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	25633191	.	G	.	.	PASS	END=25633217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	25633218	.	C	.	.	PASS	END=25633234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	25633235	.	T	.	.	PASS	END=25633256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:59
chr1	25633257	.	T	.	.	PASS	END=25633258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:59
chr1	25633259	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:51:59
chr1	25633260	.	C	.	.	PASS	END=25633263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:59
chr1	25633264	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:48:59
chr1	25633265	.	A	.	.	PASS	END=25633292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:58
chr1	25633293	.	T	.	.	PASS	END=25633297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:58
chr1	25633298	.	T	.	.	PASS	END=25633304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:57
chr1	25633305	.	T	.	.	PASS	END=25633311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:56
chr1	25633312	.	T	.	.	PASS	END=25633317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:56
chr1	25633318	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:6:56
chr1	25633319	.	C	.	.	PASS	END=25633325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:56
chr1	25633326	.	T	.	.	PASS	END=25633327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:56
chr1	25633328	.	A	.	.	PASS	END=25633334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:55
chr1	25633335	.	T	.	.	LowGQX	END=25633340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:54
chr1	25633341	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:54
chr1	25633342	.	A	.	.	LowGQX	END=25633349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:52
chr1	25633350	.	T	.	.	LowGQX	END=25633352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:51
chr1	25633353	.	G	.	.	LowGQX	END=25633362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:51
chr1	25633363	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:51
chr1	25634137	.	G	.	.	LowGQX	END=25634325	GT	./.
chr1	25643409	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:41:6:8
chr1	25643410	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	25643411	.	T	.	.	LowGQX;LowMQ	END=25643421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:3:8
chr1	25643422	.	G	.	.	LowGQX;LowMQ	END=25643433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:6:9
chr1	25643434	.	C	.	.	LowGQX;LowMQ	END=25643437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:9:10
chr1	25643438	.	A	.	.	LowGQX;LowMQ	END=25643442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:6:10
chr1	25643443	.	C	.	.	LowGQX;LowMQ	END=25643450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:9:10
chr1	25643451	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:36:6:11
chr1	25643452	.	C	.	.	LowGQX;LowMQ	END=25643466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:9:11
chr1	25643467	.	C	.	.	LowGQX;LowMQ	END=25643475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:12:13
chr1	25643476	.	C	.	.	LowGQX;LowMQ	END=25643477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:9:13
chr1	25643478	.	T	.	.	LowGQX;LowMQ	END=25643479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:12:11
chr1	25643480	.	G	.	.	LowGQX;LowMQ	END=25643491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:9:11
chr1	25643492	.	A	.	.	LowGQX;LowMQ	END=25643498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:6:9
chr1	25643499	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:26:3:9
chr1	25643500	.	C	.	.	LowGQX;LowMQ	END=25643513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:6:9
chr1	25643514	.	G	.	.	LowGQX;LowMQ	END=25643525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:6:11
chr1	25643526	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:15:3:12
chr1	25643527	.	C	.	.	LowGQX;LowMQ	END=25643536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:6:12
chr1	25643537	.	A	.	.	LowGQX;LowMQ	END=25643546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:6:14
chr1	25643547	.	C	.	.	LowGQX;LowMQ	END=25643549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:18
chr1	25643550	.	T	.	.	LowGQX	END=25643552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:23
chr1	25643553	.	T	C	24.11	LowGQ;LowGQX;SB	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=4.771;HRun=0;HaplotypeScore=2.8408;MQ=23;MQ0=0;MQRankSum=0.727;QD=6.03;ReadPosRankSum=0.727;SB=-1.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,3:4:22.53:54,0,23:23:23:0.750
chr1	25643554	.	G	.	36.01	LowGQX	DP=4;MQ=23;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.01:23:6
chr1	25643555	.	T	.	33	LowGQX	DP=4;MQ=23;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:23:3
chr1	25643556	.	C	.	.	LowGQX	END=25643559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:23
chr1	25643560	.	T	.	36.01	LowGQX	DP=4;MQ=23;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.01:23:6
chr1	25643561	.	C	.	.	LowGQX	END=25643562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:21
chr1	25643563	.	C	.	.	LowGQX;LowMQ	END=25643566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:6:13
chr1	25643567	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:14:3:13
chr1	25643568	.	C	.	.	LowGQX;LowMQ	END=25643570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:9:11
chr1	25643571	.	G	.	.	LowGQX;LowMQ	END=25643574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:6:8
chr1	25643575	.	G	.	.	LowGQX;LowMQ	END=25643577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:3:7
chr1	25643578	.	T	.	.	LowGQX;LowMQ	END=25643579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:9:9
chr1	25643580	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:28:3:9
chr1	25643581	.	G	.	.	LowGQX;LowMQ	END=25643585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:6:7
chr1	25643586	.	C	.	.	LowGQX;LowMQ	END=25643621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:3:5
chr1	25648329	.	T	.	.	PASS	END=25648348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	25648349	.	T	C	1023.20	PASS	DP=32;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=4.7346;MQ=60;MQ0=0;QD=31.97;SB=-150.90	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,32:32:84.26:1056,84,0:60:84:1.000
chr1	25648350	.	C	.	.	PASS	END=25648368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	25648369	.	C	.	.	PASS	END=25648373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	25648374	.	A	.	.	PASS	END=25648425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:59
chr1	25648426	.	A	.	.	PASS	END=25648517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:54
chr1	25648518	.	A	.	.	PASS	END=25648523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:52
chr1	25648524	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:72:52
chr1	25655310	.	T	.	.	PASS	END=25655321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:75:31
chr1	25655322	.	C	.	.	PASS	END=25655332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:87:29
chr1	25655333	.	G	.	.	PASS	END=25655335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:75:29
chr1	25655336	.	A	.	.	PASS	END=25655361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:90:27
chr1	25655362	.	A	.	.	PASS	END=25655407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:93:26
chr1	25655408	.	G	.	.	PASS	END=25655466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:34
chr1	25655467	.	C	.	.	PASS	END=25655507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:45
chr1	25655508	.	A	.	.	PASS	END=25655573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:57
chr1	25655574	.	C	.	.	PASS	END=25655585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:56
chr1	25655586	.	A	.	.	PASS	END=25655617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:87:54
chr1	25655618	.	A	.	.	PASS	END=25655622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:72:52
chr1	25655623	.	A	.	.	PASS	END=25655642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:49
chr1	25655643	.	C	.	.	PASS	END=25655650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:44
chr1	25655651	.	A	.	.	PASS	END=25655653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:42
chr1	25655654	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:40
chr1	25655655	.	T	.	.	PASS	END=25655658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:40
chr1	25655659	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:40
chr1	25655660	.	G	.	.	PASS	END=25655672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:40
chr1	25655673	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:40
chr1	25655674	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:40
chr1	25655675	.	C	.	.	LowGQX	END=25655682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:40
chr1	25655683	.	A	.	.	LowGQX	END=25655684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:40
chr1	25655685	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:40
chr1	25666975	.	A	.	.	LowGQX	END=25667074	GT	./.
chr1	25669450	.	A	.	.	LowGQX	END=25669566	GT	./.
chr1	25678101	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25678102	.	A	.	.	LowGQX	.	GT	./.
chr1	25678103	.	T	.	.	LowGQX	END=25678105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25678106	.	T	.	.	LowGQX	END=25678107	GT	./.
chr1	25678108	.	T	.	.	LowGQX	END=25678109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25678110	.	C	.	.	LowGQX	.	GT	./.
chr1	25678111	.	A	.	.	LowGQX	END=25678113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25678114	.	C	.	.	LowGQX	END=25678115	GT	./.
chr1	25678116	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25678117	.	G	.	.	LowGQX	END=25678118	GT	./.
chr1	25678119	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25678120	.	T	.	.	LowGQX	END=25678121	GT	./.
chr1	25678122	.	A	.	.	LowGQX	END=25678125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25678126	.	A	.	.	LowGQX	.	GT	./.
chr1	25678127	.	G	.	.	LowGQX	END=25678129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25678130	.	T	.	.	LowGQX	END=25678132	GT	./.
chr1	25678133	.	A	.	.	LowGQX	END=25678139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25678140	.	A	.	.	LowGQX	.	GT	./.
chr1	25678141	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25678142	.	G	.	.	LowGQX	END=25678143	GT	./.
chr1	25678144	.	C	.	.	LowGQX	END=25678149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25678150	.	T	.	.	LowGQX	.	GT	./.
chr1	25678151	.	G	.	.	LowGQX	END=25678152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25678153	.	T	.	.	LowGQX	.	GT	./.
chr1	25678154	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25678155	.	G	.	.	LowGQX	.	GT	./.
chr1	25678156	.	T	.	.	LowGQX	END=25678167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25678168	.	T	.	.	LowGQX	END=25678169	GT	./.
chr1	25678170	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25678171	.	T	.	.	LowGQX	.	GT	./.
chr1	25678172	.	C	.	.	LowGQX	END=25678176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25678177	.	T	.	.	LowGQX	.	GT	./.
chr1	25678178	.	C	.	.	LowGQX	END=25678184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25678185	.	G	.	.	LowGQX	.	GT	./.
chr1	25678186	.	T	.	.	LowGQX	END=25678193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25678194	.	T	.	.	LowGQX	.	GT	./.
chr1	25678195	.	G	.	.	LowGQX	END=25678196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25678197	.	A	.	.	LowGQX	.	GT	./.
chr1	25678198	.	A	.	.	LowGQX	END=25678200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25679370	.	A	.	.	LowGQX	END=25679469	GT	./.
chr1	25683212	.	G	.	.	LowGQX	END=25683364	GT	./.
chr1	25687124	.	A	.	.	LowGQX	END=25687223	GT	./.
chr1	25688922	.	T	.	.	PASS	END=25688935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:50
chr1	25688936	.	T	.	.	PASS	END=25688964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:40
chr1	25688965	.	A	.	.	PASS	END=25688996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:37
chr1	25688997	.	G	.	.	PASS	END=25689056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:29
chr1	25689057	.	A	.	.	PASS	END=25689090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:28
chr1	25689091	.	T	.	.	PASS	END=25689097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:30
chr1	25696907	.	T	.	.	PASS	END=25697001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:54
chr1	25697002	.	C	.	.	PASS	END=25697037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	25697038	.	A	.	.	PASS	END=25697042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:59
chr1	25697043	.	C	.	.	PASS	END=25697061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:59
chr1	25697062	.	A	.	.	PASS	END=25697082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:59
chr1	25701789	.	C	.	.	PASS	END=25701815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:34
chr1	25701816	.	G	.	.	PASS	END=25701838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:36
chr1	25701839	.	C	.	.	PASS	END=25701951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:304:99:34
chr1	25701952	.	G	.	.	PASS	END=25701970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:246:99:30
chr1	25712151	.	C	.	.	PASS	END=25712165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:58
chr1	25712166	.	G	.	.	PASS	END=25712187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:59
chr1	25712188	.	G	.	.	PASS	END=25712208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	25712209	.	T	.	.	PASS	END=25712222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	25712223	.	G	.	.	PASS	END=25712240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	25712241	.	A	.	.	PASS	END=25712359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	25712360	.	A	.	.	PASS	END=25712383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	25712384	.	C	.	.	PASS	END=25712386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	25715416	.	T	.	.	PASS	END=25715442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	25715443	.	A	.	.	PASS	END=25715453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	25715454	.	T	.	.	PASS	END=25715538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:57
chr1	25715539	.	A	.	.	PASS	END=25715586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:53
chr1	25715587	.	C	.	.	PASS	END=25715601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:51
chr1	25715602	.	A	.	.	PASS	END=25715603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:44
chr1	25715604	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:39:40
chr1	25715605	.	C	.	.	PASS	END=25715622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:36
chr1	25715623	.	T	.	.	PASS	END=25715633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:33
chr1	25715634	.	A	.	.	PASS	END=25715640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:33
chr1	25715641	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:35
chr1	25715642	.	A	.	.	PASS	END=25715647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:35
chr1	25715648	.	A	.	.	LowGQX	END=25715652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:37
chr1	25715653	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:38
chr1	25715654	.	C	.	.	LowGQX	END=25715655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:38
chr1	25717189	.	G	.	.	PASS	END=25717219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:58
chr1	25717220	.	A	.	.	PASS	END=25717250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:59
chr1	25717251	.	T	.	.	PASS	END=25717364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:58
chr1	25717365	.	C	G	1904.42	PASS	BaseQRankSum=0.670;DP=162;Dels=0.00;FS=1.276;HRun=1;HaplotypeScore=14.3592;MQ=58;MQ0=0;MQRankSum=1.897;QD=11.76;ReadPosRankSum=1.816;SB=-1056.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:79,83:162:99:1934,0,2093:58:99:0.512
chr1	25717366	.	A	.	.	PASS	END=25717396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:57
chr1	25717397	.	A	.	.	PASS	END=25717434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:54
chr1	25717435	.	A	.	.	PASS	END=25717445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:52
chr1	25717446	.	T	.	.	PASS	END=25717457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:50
chr1	25718434	.	G	.	.	PASS	END=25718437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	25718438	.	T	.	.	PASS	END=25718452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	25718453	.	G	.	.	PASS	END=25718471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	25718472	.	A	.	.	PASS	END=25718516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	25718517	.	C	.	.	PASS	END=25718568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	25718569	.	C	.	.	PASS	END=25718618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	25718619	.	A	.	.	PASS	END=25718661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	25718662	.	T	.	.	PASS	END=25718683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	25729036	.	G	.	.	PASS	END=25729070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:56
chr1	25729071	.	C	.	.	PASS	END=25729172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:57
chr1	25729173	.	C	.	.	PASS	END=25729216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:57
chr1	25729217	.	C	.	.	PASS	END=25729230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	25729231	.	C	.	.	PASS	END=25729250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	25729251	.	G	.	.	PASS	END=25729288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	25735123	.	G	.	.	PASS	END=25735134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:45
chr1	25735135	.	C	.	.	PASS	END=25735161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:45
chr1	25735162	.	C	.	.	PASS	END=25735180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:45
chr1	25735181	.	G	.	.	PASS	END=25735320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:50
chr1	25735321	.	C	.	.	PASS	END=25735342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	25735343	.	C	.	.	PASS	END=25735361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	25735362	.	T	.	.	PASS	END=25735386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:59
chr1	25735387	.	G	.	.	PASS	END=25735411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:54
chr1	25737830	.	C	.	.	LowGQX	END=25737903	GT	./.
chr1	25737904	.	A	.	.	LowGQX	END=25737930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25747079	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:81:47
chr1	25747080	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:62:47
chr1	25747081	.	C	.	.	PASS	END=25747082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:47
chr1	25747083	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:54:46
chr1	25747084	.	G	.	.	PASS	END=25747088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:44
chr1	25747089	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:45:44
chr1	25747090	.	G	.	.	PASS	END=25747091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:44
chr1	25747092	.	T	.	.	PASS	END=25747094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:54:44
chr1	25747095	.	T	.	.	PASS	END=25747097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:43
chr1	25747098	.	C	.	.	PASS	END=25747100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:48:43
chr1	25747101	.	C	.	.	PASS	END=25747103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:42
chr1	25747104	.	T	.	.	PASS	END=25747105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:42
chr1	25747106	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:54:42
chr1	25747107	.	C	.	.	PASS	END=25747109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:42
chr1	25747110	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:53:42
chr1	25747111	.	T	.	.	PASS	END=25747116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:72:40
chr1	25747117	.	A	.	.	PASS	END=25747120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:40
chr1	25747121	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:41:40
chr1	25747122	.	A	.	.	PASS	END=25747127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:39
chr1	25747128	.	A	.	.	PASS	END=25747129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:51:39
chr1	25747130	.	C	.	.	PASS	END=25747144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:37
chr1	25747145	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:66:37
chr1	25747146	.	G	.	.	PASS	END=25747149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:75:37
chr1	25747150	.	C	.	.	PASS	END=25747194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:87:35
chr1	25747195	.	A	.	.	PASS	END=25747228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:33
chr1	25747229	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:99:33
chr1	25747230	.	G	C	1367.81	PASS	BaseQRankSum=1.114;DP=55;Dels=0.00;FS=2.675;HRun=1;HaplotypeScore=1.8938;MQ=33;MQ0=4;MQRankSum=-2.401;QD=24.87;ReadPosRankSum=-0.718;SB=-387.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,52:55:84.56:1401,85,0:33:85:0.963
chr1	25747231	.	C	.	.	PASS	END=25747273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:31
chr1	25747274	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:66:30
chr1	25747275	.	C	.	.	PASS	END=25747287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:30
chr1	25747288	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:66:32
chr1	25747289	.	C	.	.	PASS	END=25747293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:31
chr1	25747294	.	T	.	.	PASS	END=25747301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:75:31
chr1	25747302	.	T	.	.	PASS	END=25747303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:60:34
chr1	25747304	.	C	.	.	PASS	END=25747306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:81:34
chr1	25747307	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:65:34
chr1	25747308	.	C	.	.	PASS	END=25747319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:75:34
chr1	25747320	.	T	.	.	PASS	END=25747328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:72:36
chr1	25757520	.	G	.	.	LowGQX	END=25757679	GT	./.
chr1	25773251	.	A	.	.	LowGQX	END=25773396	GT	./.
chr1	25775297	.	A	.	.	LowGQX	END=25775406	GT	./.
chr1	25775407	.	C	.	.	LowGQX	END=25775427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25780748	.	A	.	.	LowGQX	END=25780875	GT	./.
chr1	25783122	.	G	.	.	LowGQX	END=25783137	GT	./.
chr1	25783138	.	T	.	.	LowGQX	END=25783148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25783149	.	G	.	.	LowGQX	.	GT	./.
chr1	25783150	.	G	.	.	LowGQX	END=25783167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25783168	.	G	.	.	LowGQX	.	GT	./.
chr1	25783169	.	G	.	.	LowGQX	END=25783204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25783205	.	C	.	.	LowGQX	.	GT	./.
chr1	25783206	.	G	.	.	LowGQX	END=25783207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25783208	.	T	.	.	LowGQX	.	GT	./.
chr1	25783209	.	T	.	.	LowGQX	END=25783232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25783233	.	A	.	.	LowGQX	.	GT	./.
chr1	25783234	.	A	.	.	LowGQX	END=25783288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25783289	.	A	.	.	LowGQX	END=25783324	GT	./.
chr1	25784880	.	A	.	.	LowGQX	END=25785375	GT	./.
chr1	25785376	.	C	.	.	LowGQX	END=25785385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	25810605	.	A	.	.	LowGQX	END=25810767	GT	./.
chr1	25812102	.	A	.	.	LowGQX	END=25812288	GT	./.
chr1	25815662	.	A	.	.	LowGQX	END=25815786	GT	./.
chr1	25817899	.	A	.	.	LowGQX	END=25818077	GT	./.
chr1	25824753	.	A	.	.	LowGQX	END=25824959	GT	./.
chr1	25870139	.	T	.	.	LowGQX	END=25870185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	25870186	.	G	.	.	LowGQX	END=25870248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	25870249	.	G	.	.	LowGQX	END=25870293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	25870294	.	C	.	.	LowGQX	END=25870321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	25870322	.	G	.	.	LowGQX	END=25870328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	25880362	.	G	.	.	PASS	END=25880368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	25880369	.	G	.	.	PASS	END=25880373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	25880374	.	G	.	.	PASS	END=25880382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	25880383	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:75:60
chr1	25880384	.	G	.	.	PASS	END=25880390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	25880391	.	G	.	.	PASS	END=25880395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	25880396	.	A	.	.	PASS	END=25880407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	25880408	.	C	.	.	PASS	END=25880434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	25880435	.	C	.	.	PASS	END=25880511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	25880512	.	G	.	.	PASS	END=25880541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	25880542	.	G	.	.	PASS	END=25880556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	25880557	.	T	.	.	PASS	END=25880584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	25880585	.	A	.	.	PASS	END=25880606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	25881300	.	T	.	.	PASS	END=25881319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	25881320	.	C	.	.	PASS	END=25881332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:78:60
chr1	25881333	.	C	.	.	PASS	END=25881357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	25881358	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:86:48:60
chr1	25881359	.	C	.	.	PASS	END=25881449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	25881450	.	G	.	.	PASS	END=25881466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	25881467	.	C	.	.	PASS	END=25881481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	25881482	.	T	.	.	PASS	END=25881486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	25881487	.	C	.	.	PASS	END=25881503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	25881504	.	G	.	.	PASS	END=25881514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	25883593	.	G	.	.	PASS	END=25883648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	25883649	.	C	.	.	PASS	END=25883709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	25883710	.	C	.	.	PASS	END=25883724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	25883725	.	G	.	.	PASS	END=25883744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	25883745	.	C	.	.	PASS	END=25883754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr1	25883755	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr1	25883756	.	A	.	.	PASS	END=25883768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	25883769	.	A	.	.	PASS	END=25883770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	25883771	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:63:60
chr1	25883772	.	G	.	.	PASS	END=25883773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	25883774	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:57:60
chr1	25883775	.	G	.	.	PASS	END=25883778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	25883779	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:69:60
chr1	25883780	.	G	.	.	PASS	END=25883803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	25883804	.	C	.	.	PASS	END=25883809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	25889084	.	T	.	.	PASS	END=25889093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	25889094	.	C	.	.	PASS	END=25889134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	25889135	.	G	.	.	PASS	END=25889159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	25889160	.	C	.	.	PASS	END=25889227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	25889228	.	T	.	.	PASS	END=25889246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	25889247	.	G	.	.	PASS	END=25889258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	25889500	.	G	.	.	PASS	END=25889513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	25889514	.	G	.	.	PASS	END=25889533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	25889534	.	C	.	.	PASS	END=25889546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	25889547	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:69:60
chr1	25889548	.	C	.	.	PASS	END=25889631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	25889632	.	T	C	629.32	PASS	BaseQRankSum=0.758;DP=57;Dels=0.00;FS=3.917;HRun=5;HaplotypeScore=13.2569;MQ=60;MQ0=0;MQRankSum=0.200;QD=11.04;ReadPosRankSum=0.279;SB=-294.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,29:57:99:659,0,639:60:99:0.509
chr1	25889633	.	C	.	.	PASS	END=25889649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:84:60
chr1	25889650	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:72:60
chr1	25889651	.	C	.	.	PASS	END=25889672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	25889673	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:60
chr1	25889674	.	C	.	.	PASS	END=25889680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	25889681	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:39:60
chr1	25889682	.	G	.	.	PASS	END=25889683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	25889684	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:57:60
chr1	25889685	.	G	.	.	PASS	END=25889688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	25889689	.	T	.	.	PASS	END=25889690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:36:60
chr1	25889691	.	G	.	.	PASS	END=25889694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	25889695	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr1	25890101	.	A	.	.	PASS	END=25890129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:92:60
chr1	25890130	.	A	.	.	PASS	END=25890147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	25890148	.	A	.	.	PASS	END=25890188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	25890189	.	A	G	971.14	PASS	BaseQRankSum=-0.729;DP=96;Dels=0.00;FS=0.836;HRun=1;HaplotypeScore=15.2534;MQ=60;MQ0=0;MQRankSum=-0.253;QD=10.12;ReadPosRankSum=-1.052;SB=-566.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:48,48:96:99:1001,0,1031:60:99:0.500
chr1	25890190	.	G	.	.	PASS	END=25890230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	25890231	.	C	.	.	PASS	END=25890275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	25890276	.	T	.	.	PASS	END=25890298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	25890299	.	C	.	.	PASS	END=25890310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	25890311	.	T	.	.	PASS	END=25890333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	25891613	.	G	.	.	PASS	END=25891723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	25891724	.	A	.	.	PASS	END=25891738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	25891739	.	C	.	.	PASS	END=25891749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	25893288	.	G	.	.	PASS	END=25893314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	25893315	.	G	.	.	PASS	END=25893347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:60
chr1	25893348	.	G	.	.	PASS	END=25893392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:321:99:60
chr1	25893393	.	G	.	.	PASS	END=25893479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:332:99:60
chr1	25893480	.	C	.	.	PASS	END=25893516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr1	25893517	.	A	.	.	PASS	END=25893534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	25944277	.	G	.	.	LowGQX	END=25944702	GT	./.
chr1	25944703	.	G	.	.	LowGQX	END=25944836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26012929	.	A	.	.	LowGQX	END=26013029	GT	./.
chr1	26073107	.	G	.	.	LowGQX	END=26073110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26073111	.	A	.	.	LowGQX	.	GT	./.
chr1	26073112	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26073113	.	G	.	.	LowGQX	.	GT	./.
chr1	26073114	.	A	.	.	LowGQX	END=26073121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26073122	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26073123	.	G	.	.	LowGQX	END=26073125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26073126	.	C	.	.	LowGQX	.	GT	./.
chr1	26073127	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26073128	.	G	.	.	LowGQX	.	GT	./.
chr1	26073129	.	G	.	.	LowGQX	END=26073141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26073142	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26073143	.	T	.	.	LowGQX	END=26073145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26073146	.	T	.	.	LowGQX	.	GT	./.
chr1	26073147	.	C	.	.	LowGQX	END=26073150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26073151	.	G	.	.	LowGQX	.	GT	./.
chr1	26073152	.	C	.	.	LowGQX	END=26073170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26073171	.	G	.	.	LowGQX	END=26073173	GT	./.
chr1	26073174	.	C	.	.	LowGQX	END=26073178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26073179	.	G	.	.	LowGQX	.	GT	./.
chr1	26073180	.	T	.	.	LowGQX	END=26073186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26073187	.	C	.	.	LowGQX	.	GT	./.
chr1	26073188	.	T	.	.	LowGQX	END=26073189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26073190	.	C	.	.	LowGQX	.	GT	./.
chr1	26073191	.	C	.	.	LowGQX	END=26073193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26073194	.	G	.	.	LowGQX	.	GT	./.
chr1	26073195	.	A	.	.	LowGQX	END=26073198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26073199	.	C	.	.	LowGQX	.	GT	./.
chr1	26073200	.	C	.	.	LowGQX	END=26073210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26073211	.	G	.	.	LowGQX	.	GT	./.
chr1	26073212	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26073213	.	A	.	.	LowGQX	END=26073276	GT	./.
chr1	26075737	.	G	.	.	LowGQX	END=26075836	GT	./.
chr1	26079973	.	A	.	.	LowGQX	END=26080072	GT	./.
chr1	26085081	.	A	.	.	LowGQX	END=26085202	GT	./.
chr1	26090362	.	C	.	.	LowGQX	END=26090461	GT	./.
chr1	26098146	.	A	.	.	LowGQX	END=26098265	GT	./.
chr1	26104594	.	A	.	.	LowGQX	END=26104595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26104596	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26104597	.	C	.	.	LowGQX	END=26104612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26104613	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26104614	.	C	.	.	LowGQX	END=26104631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26104632	.	G	.	.	LowGQX	.	GT	./.
chr1	26104633	.	G	.	.	LowGQX	END=26104704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26104705	.	G	.	.	LowGQX	END=26104817	GT	./.
chr1	26107429	.	A	.	.	LowGQX	END=26107605	GT	./.
chr1	26109074	.	A	.	.	LowGQX	END=26109193	GT	./.
chr1	26110152	.	A	.	.	LowGQX	END=26110239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	26110240	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	26110241	.	C	.	.	LowGQX	END=26110282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26126671	.	G	.	.	LowGQX	END=26126896	GT	./.
chr1	26126897	.	C	.	.	LowGQX	END=26126920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26126921	.	G	.	.	LowGQX	.	GT	./.
chr1	26126922	.	C	.	.	LowGQX	END=26126955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26127483	.	A	.	.	PASS	END=26127524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	26127525	.	C	.	.	PASS	END=26127561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	26127562	.	A	.	.	PASS	END=26127661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	26127662	.	A	.	.	PASS	END=26127692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	26127693	.	C	.	.	PASS	END=26127702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	26128468	.	T	.	.	PASS	END=26128483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	26128484	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:57:60
chr1	26128485	.	T	.	84.16	PASS	DP=34;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:27:27:54.17:60:54
chr1	26128486	.	T	.	.	PASS	END=26128487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:59
chr1	26128488	.	T	.	.	PASS	END=26128499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:59
chr1	26128500	.	G	.	.	PASS	END=26128507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:57:59
chr1	26128508	.	G	.	.	PASS	END=26128526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:59
chr1	26128527	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:44:60
chr1	26128528	.	C	.	.	PASS	END=26128549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	26128550	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:46:60
chr1	26128551	.	A	.	.	PASS	END=26128626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	26131582	.	G	.	.	PASS	END=26131588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	26131589	.	C	.	.	PASS	END=26131594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	26131595	.	C	.	.	PASS	END=26131621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	26131622	.	G	.	.	PASS	END=26131642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	26131643	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:51:60
chr1	26131644	.	G	.	.	PASS	END=26131653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	26131654	.	G	A	1322.50	PASS	DP=49;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=26.99;SB=-658.80	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,49:49:99:1356,99,0:60:99:1.000
chr1	26131655	.	C	.	.	PASS	END=26131696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	26131697	.	C	.	.	PASS	END=26131768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	26131769	.	G	.	.	PASS	END=26131774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	26131775	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:64:60
chr1	26131776	.	G	.	.	PASS	END=26131796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	26131797	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:75:60
chr1	26131798	.	C	.	.	PASS	END=26131812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	26131813	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:56:60
chr1	26131814	.	G	.	.	PASS	END=26131817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:60
chr1	26135020	.	C	.	.	PASS	END=26135058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	26135059	.	C	.	.	PASS	END=26135077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	26135078	.	G	.	.	PASS	END=26135114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	26135115	.	C	.	.	PASS	END=26135235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	26135236	.	C	.	.	PASS	END=26135276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	26135277	.	G	.	.	PASS	END=26135318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	26135319	.	C	.	.	PASS	END=26135331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	26135466	.	C	.	.	PASS	END=26135482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	26135483	.	C	.	.	PASS	END=26135613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	26135614	.	G	.	.	PASS	END=26135629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	26135630	.	T	.	.	PASS	END=26135644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:59
chr1	26135645	.	A	.	.	PASS	END=26135650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:59
chr1	26135651	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:57:59
chr1	26135652	.	C	.	.	PASS	END=26135656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:59
chr1	26135657	.	T	.	.	PASS	END=26135658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:59:59
chr1	26135659	.	G	.	.	PASS	END=26135670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:59
chr1	26135671	.	C	.	.	PASS	END=26135692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	26136123	.	T	.	.	PASS	END=26136142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	26136143	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:84:60
chr1	26136144	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:53:60
chr1	26136145	.	T	.	.	PASS	END=26136154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	26136155	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:49:60
chr1	26136156	.	A	.	.	PASS	END=26136169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	26136170	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr1	26136171	.	C	.	.	PASS	END=26136181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr1	26136182	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:60:60
chr1	26136183	.	C	.	.	PASS	END=26136229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	26136230	.	C	.	.	PASS	END=26136296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	26136297	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:70:60
chr1	26136298	.	G	.	.	PASS	END=26136324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	26136325	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:48:60
chr1	26136326	.	C	.	.	PASS	END=26136331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	26136332	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:40:60
chr1	26136333	.	A	.	.	PASS	END=26136350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	26136351	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:50:60
chr1	26136352	.	A	.	.	PASS	END=26136354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	26136355	.	T	.	.	PASS	END=26136362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	26137894	.	A	.	.	PASS	END=26137923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	26137924	.	A	.	.	PASS	END=26137951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	26137952	.	A	.	.	PASS	END=26138039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	26138040	.	A	.	.	PASS	END=26138077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	26138131	.	G	.	.	PASS	END=26138135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	26138136	.	C	A	388.72	PASS	BaseQRankSum=-0.938;DP=39;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=8.5750;MQ=60;MQ0=0;MQRankSum=1.111;QD=9.97;ReadPosRankSum=-0.563;SB=-140.48	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:24,15:39:99:419,0,709:60:99:0.385
chr1	26138137	.	T	.	.	PASS	END=26138176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	26138177	.	C	.	.	PASS	END=26138203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	26138204	.	C	.	.	PASS	END=26138252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	26138253	.	C	.	.	PASS	END=26138261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	26138262	.	T	C	2848.82	PASS	DP=98;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=4.7346;MQ=60;MQ0=0;QD=29.07;SB=-1818.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,98:98:99:2882,217,0:60:99:1.000
chr1	26138263	.	T	.	.	PASS	END=26138334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	26138335	.	C	.	.	PASS	END=26138358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	26138359	.	C	.	.	PASS	END=26138399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	26138400	.	T	.	.	PASS	END=26138405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	26138406	.	T	.	.	PASS	END=26138420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	26138421	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr1	26139127	.	G	.	.	PASS	END=26139136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr1	26139137	.	C	T	1303.80	PASS	DP=53;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=6.6709;MQ=60;MQ0=0;QD=24.60;SB=-426.59	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,53:53:99:1337,99,0:60:99:1.000
chr1	26139138	.	G	.	.	PASS	END=26139159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:93:60
chr1	26139160	.	G	.	.	PASS	END=26139193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	26139194	.	T	.	.	PASS	END=26139252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	26139253	.	T	.	.	PASS	END=26139300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:94:60
chr1	26139301	.	A	.	.	PASS	END=26139316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	26139317	.	G	.	.	PASS	END=26139334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	26140077	.	G	.	.	LowGQX	END=26140091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26140092	.	C	.	.	LowGQX	.	GT	./.
chr1	26140093	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26140094	.	G	.	.	LowGQX	END=26140125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	26140126	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	26140127	.	G	.	.	LowGQX	END=26140132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	26140133	.	G	.	.	LowGQX	END=26140147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	26140148	.	G	.	.	LowGQX	END=26140158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	26140159	.	A	.	.	LowGQX	END=26140160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:60
chr1	26140161	.	C	.	.	LowGQX	END=26140163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	26140164	.	C	.	.	PASS	END=26140165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	26140166	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	26140167	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:12:60
chr1	26140168	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	26140169	.	C	.	.	PASS	END=26140172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	26140173	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	26140174	.	T	.	.	PASS	END=26140176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	26140321	.	T	.	.	PASS	END=26140323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	26140324	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:60:60
chr1	26140325	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:99:60
chr1	26140326	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr1	26140327	.	C	.	.	PASS	END=26140347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	26140348	.	T	.	.	PASS	END=26140349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	26140350	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:75:60
chr1	26140351	.	C	.	.	PASS	END=26140374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	26140375	.	C	.	.	PASS	END=26140387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	26140388	.	C	.	.	PASS	END=26140416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	26140417	.	T	.	.	PASS	END=26140572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	26140573	.	C	A	3578.08	PASS	BaseQRankSum=0.727;DP=131;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=4.7868;MQ=60;MQ0=0;MQRankSum=0.172;QD=27.31;ReadPosRankSum=0.066;SB=-1983.86	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,130:131:99:3578,241,0:60:99:0.992
chr1	26140574	.	C	.	.	PASS	END=26140673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	26140674	.	G	.	.	PASS	END=26140689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	26140690	.	C	.	.	PASS	END=26140705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	26140706	.	A	.	.	PASS	END=26140720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	26141988	.	A	.	.	PASS	END=26142015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:83:60
chr1	26142016	.	G	.	.	PASS	END=26142041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	26142042	.	C	.	.	PASS	END=26142148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	26142149	.	C	.	.	PASS	END=26142186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	26142187	.	G	.	.	PASS	END=26142205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	26142206	.	C	.	.	PASS	END=26142232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	26142233	.	A	.	.	PASS	END=26142239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	26142240	.	C	.	.	PASS	END=26142244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr1	26142245	.	G	.	.	PASS	END=26142252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	26142253	.	G	.	.	PASS	END=26142259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	26142260	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:51:60
chr1	26146673	.	C	.	.	LowGQX	END=26146808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26146809	.	T	.	.	LowGQX	.	GT	./.
chr1	26146810	.	G	.	.	LowGQX	END=26146818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26146819	.	T	.	.	LowGQX	.	GT	./.
chr1	26146820	.	C	.	.	LowGQX	END=26146822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26146823	.	A	.	.	LowGQX	END=26146824	GT	./.
chr1	26146825	.	G	.	.	LowGQX	END=26146826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26146827	.	T	.	.	LowGQX	END=26146828	GT	./.
chr1	26146829	.	C	.	.	LowGQX	END=26146836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26146837	.	T	.	.	LowGQX	.	GT	./.
chr1	26146838	.	C	.	.	LowGQX	END=26146841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26146842	.	T	.	.	LowGQX	.	GT	./.
chr1	26146843	.	C	.	.	LowGQX	END=26146847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26146848	.	T	.	.	LowGQX	.	GT	./.
chr1	26146849	.	C	.	.	LowGQX	END=26146850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26146851	.	T	.	.	LowGQX	.	GT	./.
chr1	26146852	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26146853	.	T	.	.	LowGQX	.	GT	./.
chr1	26146854	.	G	.	.	LowGQX	END=26146855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26146856	.	G	.	.	LowGQX	END=26146857	GT	./.
chr1	26146858	.	C	.	.	LowGQX	END=26146859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26146860	.	A	.	.	LowGQX	.	GT	./.
chr1	26146861	.	A	.	.	LowGQX	END=26146868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26146869	.	T	.	.	LowGQX	.	GT	./.
chr1	26146870	.	G	.	.	LowGQX	END=26146883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26146884	.	C	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	26146885	.	A	.	.	LowGQX	END=26146911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26146912	.	T	.	.	LowGQX	.	GT	./.
chr1	26146913	.	C	.	.	LowGQX	END=26146914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26146915	.	T	.	.	LowGQX	.	GT	./.
chr1	26146916	.	C	.	.	LowGQX	END=26146942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26146943	.	T	.	.	LowGQX	END=26147312	GT	./.
chr1	26149464	.	A	.	.	LowGQX	END=26149621	GT	./.
chr1	26149722	.	T	.	.	LowGQX	END=26149821	GT	./.
chr1	26149834	.	C	.	.	LowGQX	END=26149933	GT	./.
chr1	26150112	.	C	.	.	LowGQX	END=26150241	GT	./.
chr1	26152791	.	A	.	.	LowGQX	END=26152838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26152839	.	T	.	.	LowGQX	END=26152904	GT	./.
chr1	26153104	.	A	.	.	LowGQX	END=26153125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26153126	.	G	.	.	LowGQX	.	GT	./.
chr1	26153127	.	G	.	.	LowGQX	END=26153138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26153139	.	A	.	.	LowGQX	.	GT	./.
chr1	26153140	.	C	.	.	LowGQX	END=26153182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26153183	.	A	.	.	LowGQX	.	GT	./.
chr1	26153184	.	C	.	.	LowGQX	END=26153185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26153186	.	T	.	.	LowGQX	.	GT	./.
chr1	26153187	.	G	.	.	LowGQX	END=26153204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	26153205	.	G	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr1	26153206	.	C	.	.	LowGQX	END=26153319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	26155998	.	A	.	.	LowGQX	END=26156176	GT	./.
chr1	26156177	.	G	.	.	LowGQX	END=26156323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26158410	.	A	.	.	LowGQX	END=26158519	GT	./.
chr1	26158564	.	C	.	.	LowGQX	END=26158663	GT	./.
chr1	26161482	.	A	.	.	LowGQX	END=26162339	GT	./.
chr1	26163902	.	A	.	.	LowGQX	END=26164047	GT	./.
chr1	26185709	.	C	.	.	LowGQX	END=26185755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26185756	.	C	.	.	LowGQX	.	GT	./.
chr1	26185757	.	C	.	.	LowGQX	END=26185797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26185798	.	C	.	.	LowGQX	.	GT	./.
chr1	26185799	.	G	.	.	LowGQX	END=26185845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26185846	.	C	.	.	LowGQX	END=26185859	GT	./.
chr1	26189288	.	C	.	.	LowGQX	END=26189423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26189424	.	T	.	.	LowGQX	END=26189632	GT	./.
chr1	26189633	.	G	.	.	LowGQX	END=26189661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26189662	.	A	.	.	LowGQX	.	GT	./.
chr1	26189663	.	T	.	.	LowGQX	END=26189712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26189713	.	C	.	.	LowGQX	.	GT	./.
chr1	26189714	.	T	.	.	LowGQX	END=26189722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26189723	.	C	.	.	LowGQX	.	GT	./.
chr1	26189724	.	G	.	.	LowGQX	END=26189776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26189777	.	G	.	.	LowGQX	.	GT	./.
chr1	26189778	.	A	.	.	LowGQX	END=26189782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26189783	.	C	.	.	LowGQX	END=26189877	GT	./.
chr1	26189878	.	A	.	.	LowGQX	END=26189880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26189881	.	C	.	.	LowGQX	.	GT	./.
chr1	26189882	.	T	.	.	LowGQX	END=26190022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26190023	.	T	.	.	LowGQX	.	GT	./.
chr1	26190024	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26190025	.	T	.	.	LowGQX	.	GT	./.
chr1	26190026	.	G	.	.	LowGQX	END=26190027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26190028	.	G	.	.	LowGQX	END=26190332	GT	./.
chr1	26212213	.	C	.	.	PASS	END=26212272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	26212273	.	G	.	.	PASS	END=26212324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	26212325	.	T	.	.	PASS	END=26212355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	26212356	.	T	.	.	PASS	END=26212360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	26227493	.	G	.	.	PASS	END=26227541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	26227542	.	A	.	.	PASS	END=26227579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	26227580	.	T	.	.	PASS	END=26227586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr1	26227587	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:75:60
chr1	26227588	.	A	.	.	PASS	END=26227590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:78:60
chr1	26227591	.	G	.	.	PASS	END=26227592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:69:60
chr1	26227980	.	A	.	.	PASS	END=26228010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	26228011	.	C	.	.	PASS	END=26228058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	26228059	.	G	.	.	PASS	END=26228158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	26228159	.	C	.	.	PASS	END=26228175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	26230110	.	T	.	.	PASS	END=26230129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	26230130	.	A	.	.	PASS	END=26230249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	26230250	.	A	.	.	PASS	END=26230280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	26230281	.	T	.	.	PASS	END=26230297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	26230298	.	T	.	.	PASS	END=26230306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	26231112	.	A	.	.	PASS	END=26231200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	26231201	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:72:76:60
chr1	26231202	.	T	.	.	PASS	END=26231211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	26288478	.	G	.	.	LowGQX	END=26288577	GT	./.
chr1	26299047	.	A	.	.	LowGQX	END=26299205	GT	./.
chr1	26300969	.	A	.	.	LowGQX	END=26301143	GT	./.
chr1	26303169	.	T	.	.	LowGQX	END=26303268	GT	./.
chr1	26308853	.	A	.	.	LowGQX	END=26308970	GT	./.
chr1	26310435	.	A	.	.	LowGQX	END=26310593	GT	./.
chr1	26310936	.	C	.	.	LowGQX	END=26311035	GT	./.
chr1	26314720	.	A	.	.	LowGQX	END=26314879	GT	./.
chr1	26315937	.	A	.	.	LowGQX	END=26316094	GT	./.
chr1	26317213	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317214	.	T	.	.	LowGQX	.	GT	./.
chr1	26317215	.	T	.	.	LowGQX	END=26317224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317225	.	T	.	.	LowGQX	END=26317227	GT	./.
chr1	26317228	.	T	.	.	LowGQX	END=26317230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317231	.	C	.	.	LowGQX	.	GT	./.
chr1	26317232	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317233	.	C	.	.	LowGQX	.	GT	./.
chr1	26317234	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317235	.	C	.	.	LowGQX	.	GT	./.
chr1	26317236	.	C	.	.	LowGQX	END=26317239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317240	.	A	.	.	LowGQX	.	GT	./.
chr1	26317241	.	C	.	.	LowGQX	END=26317244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317245	.	C	.	.	LowGQX	.	GT	./.
chr1	26317246	.	C	.	.	LowGQX	END=26317248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317249	.	C	.	.	LowGQX	.	GT	./.
chr1	26317250	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317251	.	G	.	.	LowGQX	END=26317252	GT	./.
chr1	26317253	.	C	.	.	LowGQX	END=26317258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317259	.	G	.	.	LowGQX	.	GT	./.
chr1	26317260	.	G	.	.	LowGQX	END=26317264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317265	.	G	.	.	LowGQX	.	GT	./.
chr1	26317266	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317267	.	C	.	.	LowGQX	.	GT	./.
chr1	26317268	.	C	.	.	LowGQX	END=26317272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317273	.	A	.	.	LowGQX	.	GT	./.
chr1	26317274	.	C	.	.	LowGQX	END=26317276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317277	.	G	.	.	LowGQX	.	GT	./.
chr1	26317278	.	T	.	.	LowGQX	END=26317283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317284	.	G	.	.	LowGQX	.	GT	./.
chr1	26317285	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317286	.	C	.	.	LowGQX	.	GT	./.
chr1	26317287	.	C	.	.	LowGQX	END=26317290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317291	.	G	.	.	LowGQX	.	GT	./.
chr1	26317292	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317293	.	C	.	.	LowGQX	.	GT	./.
chr1	26317294	.	T	.	.	LowGQX	END=26317297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317298	.	T	.	.	LowGQX	.	GT	./.
chr1	26317299	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317300	.	A	.	.	LowGQX	.	GT	./.
chr1	26317301	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317302	.	C	.	.	LowGQX	END=26317303	GT	./.
chr1	26317304	.	C	.	.	LowGQX	END=26317309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26317310	.	C	.	.	LowGQX	.	GT	./.
chr1	26317311	.	A	.	.	LowGQX	END=26317312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26349136	.	A	T	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	26349137	.	C	.	.	LowGQX	END=26349151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26349152	.	G	.	.	LowGQX	END=26349195	GT	./.
chr1	26349196	.	T	.	.	LowGQX	END=26349382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26349383	.	G	.	.	LowGQX	.	GT	./.
chr1	26349384	.	G	.	.	LowGQX	END=26349392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26349393	.	T	.	.	LowGQX	.	GT	./.
chr1	26349394	.	T	.	.	LowGQX	END=26349447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26349448	.	T	.	.	LowGQX	.	GT	./.
chr1	26349449	.	T	.	.	LowGQX	END=26349492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26349493	.	A	.	.	LowGQX	END=26349918	GT	./.
chr1	26355681	.	T	.	.	LowGQX	END=26355780	GT	./.
chr1	26356089	.	A	.	.	LowGQX	END=26356200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26356965	.	A	.	.	LowGQX	END=26357008	GT	./.
chr1	26357009	.	G	.	.	LowGQX	END=26357088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26357581	.	C	.	.	LowGQX	END=26357667	GT	./.
chr1	26357668	.	C	.	.	LowGQX	END=26357757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26357949	.	A	.	.	LowGQX	END=26358059	GT	./.
chr1	26358882	.	T	.	.	LowGQX	END=26358954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26358955	.	A	.	.	LowGQX	END=26358981	GT	./.
chr1	26359714	.	C	.	.	LowGQX	END=26359813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26360185	.	A	.	.	LowGQX	END=26360349	GT	./.
chr1	26361325	.	A	.	.	LowGQX	END=26361497	GT	./.
chr1	26361654	.	A	.	.	LowGQX	END=26361840	GT	./.
chr1	26365649	.	A	.	.	PASS	END=26365699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	26365700	.	T	.	.	PASS	END=26365783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	26365784	.	T	.	.	PASS	END=26365798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	26366266	.	A	.	.	PASS	END=26366317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:81:60
chr1	26366318	.	A	.	.	PASS	END=26366404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	26368189	.	A	.	.	PASS	END=26368224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	26368225	.	G	.	.	PASS	END=26368283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	26368284	.	A	.	.	PASS	END=26368298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	26369038	.	A	.	.	PASS	END=26369068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	26369069	.	G	.	.	PASS	END=26369113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:273:99:60
chr1	26369114	.	C	.	.	PASS	END=26369162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:276:99:60
chr1	26369163	.	G	.	.	PASS	END=26369195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	26369196	.	C	.	.	PASS	END=26369201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	26369887	.	A	.	.	PASS	END=26369944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	26369945	.	T	.	.	PASS	END=26370021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	26370022	.	A	.	.	PASS	END=26370024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	26370025	.	C	.	.	PASS	END=26370044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	26370787	.	A	.	.	PASS	END=26370821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	26370822	.	T	.	.	PASS	END=26370850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	26370851	.	A	.	.	PASS	END=26370902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	26370903	.	T	.	.	PASS	END=26370935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	26370936	.	C	.	.	PASS	END=26370937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	26371486	.	A	.	.	PASS	END=26371590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	26371591	.	C	.	.	PASS	END=26371682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	26371683	.	C	.	.	PASS	END=26371710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	26372253	.	A	.	.	PASS	END=26372263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:48:60
chr1	26372264	.	C	.	.	PASS	END=26372285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr1	26372286	.	G	.	.	PASS	END=26372289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	26372290	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:48:60
chr1	26372291	.	G	.	.	PASS	END=26372318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	26372319	.	C	.	.	PASS	END=26372366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	26372367	.	C	.	.	PASS	END=26372394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	26372395	.	C	.	.	PASS	END=26372412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr1	26378260	.	G	.	.	LowGQX	END=26378419	GT	./.
chr1	26380312	.	A	.	.	LowGQX	END=26380469	GT	./.
chr1	26383692	.	A	.	.	LowGQX	END=26383741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26383742	.	C	.	.	LowGQX	.	GT	./.
chr1	26383743	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26383744	.	A	.	.	LowGQX	END=26383820	GT	./.
chr1	26384081	.	C	.	.	LowGQX	END=26384100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26384101	.	C	.	.	LowGQX	.	GT	./.
chr1	26384102	.	T	.	.	LowGQX	END=26384110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26384111	.	A	.	.	LowGQX	.	GT	./.
chr1	26384112	.	C	.	.	LowGQX	END=26384180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26384879	.	A	.	.	LowGQX	END=26384998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26384999	.	T	.	.	LowGQX	END=26385021	GT	./.
chr1	26385022	.	C	.	.	LowGQX	END=26385023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26385024	.	G	.	.	LowGQX	.	GT	./.
chr1	26385025	.	C	.	.	LowGQX	END=26385073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26385074	.	A	.	.	LowGQX	.	GT	./.
chr1	26385075	.	A	.	.	LowGQX	END=26385110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26385111	.	T	.	.	LowGQX	.	GT	./.
chr1	26385112	.	C	.	.	LowGQX	END=26385116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26386755	.	A	.	.	LowGQX	END=26386785	GT	./.
chr1	26386786	.	G	.	.	LowGQX	END=26386804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26386805	.	A	.	.	LowGQX	.	GT	./.
chr1	26386806	.	C	.	.	LowGQX	END=26386854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26387655	.	A	.	.	LowGQX	END=26387672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	26387673	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26387674	.	C	.	.	LowGQX	END=26387690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26387691	.	A	.	.	LowGQX	.	GT	./.
chr1	26387692	.	C	.	.	LowGQX	END=26387827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26392746	.	C	.	.	LowGQX	END=26392785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26392786	.	A	.	.	LowGQX	.	GT	./.
chr1	26392787	.	T	.	.	LowGQX	END=26392797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26392798	.	A	.	.	LowGQX	.	GT	./.
chr1	26392799	.	C	.	.	LowGQX	END=26392800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26392801	.	A	.	.	LowGQX	.	GT	./.
chr1	26392802	.	G	.	.	LowGQX	END=26392861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26392862	.	T	.	.	LowGQX	.	GT	./.
chr1	26392863	.	G	.	.	LowGQX	END=26392874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26392875	.	A	.	.	LowGQX	.	GT	./.
chr1	26392876	.	C	.	.	LowGQX	END=26392900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26392901	.	T	.	.	LowGQX	.	GT	./.
chr1	26392902	.	G	.	.	LowGQX	END=26392933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26393825	.	A	.	.	LowGQX	END=26393987	GT	./.
chr1	26440798	.	A	.	.	LowGQX	END=26441086	GT	./.
chr1	26448326	.	A	.	.	LowGQX	END=26448464	GT	./.
chr1	26448465	.	C	.	.	LowGQX	END=26448499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26448500	.	C	.	.	LowGQX	.	GT	./.
chr1	26448501	.	T	.	.	LowGQX	END=26448631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26448632	.	G	.	.	LowGQX	.	GT	./.
chr1	26448633	.	T	.	.	LowGQX	END=26448676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26448677	.	A	.	.	LowGQX	END=26449070	GT	./.
chr1	26487781	.	A	.	.	LowGQX	END=26487926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26487927	.	C	.	.	LowGQX	END=26488607	GT	./.
chr1	26496473	.	C	.	.	LowGQX	END=26496676	GT	./.
chr1	26496907	.	A	.	.	LowGQX	END=26496922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26496923	.	A	.	.	LowGQX	.	GT	./.
chr1	26496924	.	T	.	.	LowGQX	END=26496927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26496928	.	A	.	.	LowGQX	.	GT	./.
chr1	26496929	.	C	.	.	LowGQX	END=26496950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26496951	.	A	.	.	LowGQX	.	GT	./.
chr1	26496952	.	T	.	.	LowGQX	END=26496958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26496959	.	A	.	.	LowGQX	.	GT	./.
chr1	26496960	.	C	.	.	LowGQX	END=26497005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26497006	.	T	.	.	LowGQX	.	GT	./.
chr1	26497007	.	G	.	.	LowGQX	END=26497019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26497020	.	G	.	.	LowGQX	.	GT	./.
chr1	26497021	.	G	.	.	LowGQX	END=26497053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26497054	.	T	.	.	LowGQX	.	GT	./.
chr1	26497055	.	C	.	.	LowGQX	END=26497209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26503966	.	T	.	.	PASS	END=26504056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	26504057	.	T	.	.	PASS	END=26504072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	26504073	.	T	.	.	PASS	END=26504088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr1	26504089	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr1	26504090	.	G	.	.	PASS	END=26504091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	26504092	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:60:60
chr1	26504093	.	G	.	.	PASS	END=26504095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	26504096	.	T	.	93.18	PASS	DP=46;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:34:46:63.18:60:63
chr1	26504097	.	G	.	.	PASS	END=26504100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	26504101	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:63:60
chr1	26504102	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:39:60
chr1	26504103	.	G	.	.	PASS	END=26504111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	26504112	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:63:60
chr1	26504113	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:48:60
chr1	26504114	.	G	.	.	PASS	END=26504118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	26504119	.	T	.	.	PASS	END=26504132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	26504133	.	T	.	.	PASS	END=26504134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	26504135	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:42:60
chr1	26504136	.	G	.	.	PASS	END=26504137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	26504138	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:48:60
chr1	26504139	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:66:60
chr1	26504140	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:39:60
chr1	26504141	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:54:60
chr1	26506893	.	A	.	.	PASS	END=26506902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	26506903	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:68:60
chr1	26506904	.	C	.	.	PASS	END=26506906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	26506907	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:70:60
chr1	26506908	.	T	.	.	PASS	END=26506919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	26506920	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:71:60
chr1	26506921	.	G	.	.	PASS	END=26506936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	26506937	.	C	.	.	PASS	END=26506957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	26506958	.	C	.	.	PASS	END=26507092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	26507093	.	C	.	.	PASS	END=26507108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	26507109	.	A	.	.	PASS	END=26507139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	26507140	.	A	.	.	PASS	END=26507152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	26507155	.	A	.	.	PASS	END=26507190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	26507191	.	C	.	.	PASS	END=26507292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	26507293	.	T	.	.	PASS	END=26507304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	26507305	.	T	.	.	PASS	END=26507336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	26507337	.	A	.	.	PASS	END=26507346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	26507347	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:57:60
chr1	26507348	.	T	.	.	PASS	END=26507379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	26507380	.	C	.	.	PASS	END=26507390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	26507391	.	C	.	.	PASS	END=26507396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	26507397	.	T	.	.	PASS	END=26507398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr1	26507399	.	G	.	.	PASS	END=26507409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	26507410	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:36:60
chr1	26507411	.	G	.	.	PASS	END=26507415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	26507416	.	A	.	.	PASS	END=26507428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	26507429	.	T	.	.	PASS	END=26507438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	26508297	.	T	.	.	PASS	END=26508316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	26508317	.	C	.	.	PASS	END=26508422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	26508423	.	C	.	.	PASS	END=26508453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	26508454	.	C	.	.	PASS	END=26508464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	26508465	.	C	.	.	PASS	END=26508477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	26508478	.	G	.	.	PASS	END=26508483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	26508801	.	C	.	.	PASS	END=26508818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	26508819	.	G	.	.	PASS	END=26508881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	26508882	.	G	.	.	PASS	END=26508921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	26508922	.	G	.	.	PASS	END=26509062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	26509063	.	G	.	.	PASS	END=26509076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	26509077	.	T	.	.	PASS	END=26509103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	26509104	.	C	.	.	PASS	END=26509126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:98:60
chr1	26509637	.	T	.	.	PASS	END=26509671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	26509672	.	G	.	.	PASS	END=26509817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	26509818	.	G	.	.	PASS	END=26509908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	26509909	.	C	.	.	PASS	END=26509942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	26509943	.	T	.	.	PASS	END=26509965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	26510169	.	C	.	.	PASS	END=26510230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	26510231	.	C	.	.	PASS	END=26510289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	26510290	.	A	.	.	PASS	END=26510302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	26510303	.	A	.	.	PASS	END=26510309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	26510310	.	A	.	.	PASS	END=26510316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	26510317	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:24:60
chr1	26510318	.	A	.	.	PASS	END=26510319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	26510320	.	A	.	.	PASS	END=26510321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:60
chr1	26510322	.	G	.	.	PASS	END=26510327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	26510328	.	T	.	.	PASS	END=26510332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	26510333	.	T	.	.	PASS	END=26510341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	26510342	.	C	.	.	PASS	END=26510344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	26510345	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	26510346	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	26510347	.	C	.	.	LowGQX	END=26510349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	26510350	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	26510351	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	26510352	.	T	.	.	LowGQX	END=26510355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	26510356	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	26510357	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	26510358	.	C	.	.	PASS	END=26510359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	26510360	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	26510361	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	26510362	.	C	.	.	LowGQX	END=26510363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	26510364	.	C	.	.	PASS	END=26510365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	26510366	.	T	.	51.06	LowGQX	DP=10;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:21.07:60:21
chr1	26510367	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	26510368	.	C	.	.	LowGQX	END=26510370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	26510371	.	A	.	.	LowGQX	END=26510372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	26510386	.	C	.	.	LowGQX	END=26510387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	26510388	.	A	.	.	LowGQX	END=26510393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26510394	.	A	.	.	LowGQX	.	GT	./.
chr1	26510395	.	C	.	.	LowGQX	END=26510404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26510405	.	C	.	.	LowGQX	END=26510406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	26510407	.	G	.	.	LowGQX	END=26510410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:56
chr1	26510411	.	C	.	.	LowGQX	END=26510416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:56
chr1	26510417	.	A	.	39.01	LowGQX	DP=7;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:6:9.02:56:9
chr1	26510418	.	A	.	.	LowGQX	END=26510419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:56
chr1	26510420	.	A	.	.	LowGQX	END=26510422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:56
chr1	26510423	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:56
chr1	26510424	.	A	.	.	LowGQX	END=26510428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:56
chr1	26510429	.	C	.	.	LowGQX	END=26510435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:56
chr1	26510436	.	T	.	.	LowGQX	END=26510438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	26510439	.	G	A	147.02	LowGQ;LowGQX;SB	DP=5;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=29.40;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,5:5:15.04:180,15,0:60:15:1.000
chr1	26510440	.	C	.	.	LowGQX	END=26510444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:58
chr1	26510445	.	C	.	.	LowGQX	END=26510451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:56
chr1	26510452	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:55
chr1	26510453	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:21:55
chr1	26510454	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:55
chr1	26510455	.	T	.	.	LowGQX	END=26510456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:56
chr1	26510457	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:56
chr1	26510458	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:56
chr1	26510459	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:57
chr1	26510460	.	C	.	.	PASS	END=26510462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:56
chr1	26510463	.	C	.	.	PASS	END=26510470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:58
chr1	26510471	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:63:59
chr1	26510472	.	T	.	.	PASS	END=26510476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:59
chr1	26510477	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:36:59
chr1	26510478	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:63:59
chr1	26510479	.	T	.	.	PASS	END=26510482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:59
chr1	26510483	.	G	.	.	PASS	END=26510484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	26510485	.	T	.	.	PASS	END=26510486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:36:60
chr1	26510487	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:51:60
chr1	26510488	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:36:60
chr1	26510489	.	C	.	.	PASS	END=26510492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:59
chr1	26510493	.	T	.	.	PASS	END=26510494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:48:59
chr1	26510495	.	C	.	.	PASS	END=26510498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:59
chr1	26510499	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:48:59
chr1	26510500	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:63:59
chr1	26510501	.	T	.	.	PASS	END=26510502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:39:59
chr1	26510503	.	G	.	.	PASS	END=26510505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:59
chr1	26510506	.	C	.	.	PASS	END=26510509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:59
chr1	26510510	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:44:60
chr1	26510511	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:72:60
chr1	26510512	.	C	.	.	PASS	END=26510523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	26510524	.	C	.	.	PASS	END=26510530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	26510531	.	C	.	.	PASS	END=26510542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	26510543	.	G	.	.	PASS	END=26510573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	26510574	.	G	.	.	PASS	END=26510603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	26510604	.	T	.	.	PASS	END=26510644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	26510645	.	G	.	.	PASS	END=26510795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	26510796	.	T	.	.	PASS	END=26510829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	26510841	.	G	.	.	PASS	END=26510888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	26510889	.	C	.	.	PASS	END=26510960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	26510961	.	T	.	.	PASS	END=26511039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	26511040	.	C	.	.	PASS	END=26511115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	26511116	.	C	.	.	PASS	END=26511137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	26511138	.	T	.	.	PASS	END=26511154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	26511454	.	G	.	.	PASS	END=26511471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	26511472	.	C	.	.	PASS	END=26511483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	26511484	.	G	.	.	PASS	END=26511497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	26511498	.	G	.	.	PASS	END=26511530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	26511531	.	C	.	.	PASS	END=26511639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	26511640	.	T	.	.	PASS	END=26511654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	26511655	.	T	.	.	PASS	END=26511666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	26511667	.	G	.	.	PASS	END=26511689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	26511690	.	A	.	.	PASS	END=26511699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	26511700	.	A	G	2120.18	PASS	BaseQRankSum=-1.386;DP=71;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=13.3600;MQ=60;MQ0=0;MQRankSum=-1.188;QD=29.86;ReadPosRankSum=-0.396;SB=-469.20	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,69:71:99:2153,135,0:60:99:0.986
chr1	26511701	.	G	.	.	PASS	END=26511728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	26513608	.	C	.	.	PASS	END=26513623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	26513624	.	G	.	.	PASS	END=26513652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:92:60
chr1	26513653	.	C	.	.	PASS	END=26513685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	26513686	.	G	.	.	PASS	END=26513783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	26513851	.	G	.	.	PASS	END=26513923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	26513924	.	G	.	.	PASS	END=26513976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	26513977	.	A	.	.	PASS	END=26514002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	26514003	.	T	.	.	PASS	END=26514019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:82:60
chr1	26514020	.	T	.	.	PASS	END=26514024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	26514674	.	A	.	.	PASS	END=26514716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	26514717	.	C	.	.	PASS	END=26514807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	26514808	.	T	.	.	PASS	END=26514849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	26514882	.	C	.	.	PASS	END=26514978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	26514979	.	G	.	.	PASS	END=26515143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	26515144	.	C	.	.	PASS	END=26515274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:300:99:60
chr1	26515275	.	A	.	.	PASS	END=26515380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:363:99:60
chr1	26515381	.	C	.	.	PASS	END=26515416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:291:99:60
chr1	26515417	.	T	.	.	PASS	END=26515430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	26515431	.	A	.	.	PASS	END=26515440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	26515441	.	C	.	.	PASS	END=26515465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	26515466	.	A	.	.	PASS	END=26515482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	26515483	.	T	.	.	PASS	END=26515495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	26515719	.	T	.	.	PASS	END=26515723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	26515724	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:54:60
chr1	26515725	.	C	.	.	PASS	END=26515744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	26515745	.	C	.	.	PASS	END=26515762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:86:60
chr1	26515763	.	C	.	.	PASS	END=26515797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	26515798	.	A	.	.	PASS	END=26515832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	26515833	.	A	.	.	PASS	END=26515869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	26515870	.	A	.	.	PASS	END=26515956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	26515957	.	A	.	156.54	PASS	DP=130;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:103:130:99:60:99
chr1	26515958	.	C	.	.	PASS	END=26515980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	26515981	.	A	.	.	PASS	END=26516004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	26516005	.	C	.	.	PASS	END=26516135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	26516136	.	A	.	.	PASS	END=26516166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	26516167	.	T	.	.	PASS	END=26516182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	26516183	.	C	.	.	PASS	END=26516215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	26516216	.	G	.	.	PASS	END=26516265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	26516266	.	C	.	.	PASS	END=26516281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	26516282	.	C	.	.	PASS	END=26516297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	26516298	.	C	.	.	PASS	END=26516306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	26516307	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:75:60
chr1	26516308	.	C	.	.	PASS	END=26516313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	26516314	.	A	.	.	PASS	END=26516318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	26516319	.	T	.	.	PASS	END=26516320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	26516321	.	C	.	.	PASS	END=26516329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	26516330	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:45:60
chr1	26516331	.	C	.	.	PASS	END=26516335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	26516336	.	G	.	.	PASS	END=26516340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	26516341	.	A	.	.	PASS	END=26516345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	26516346	.	C	.	.	PASS	END=26516352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	26516353	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:42:60
chr1	26516354	.	A	.	.	PASS	END=26516369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	26516370	.	T	.	.	PASS	END=26516375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	26517068	.	A	.	.	PASS	END=26517080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	26517081	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:59:60
chr1	26517082	.	G	.	.	PASS	END=26517088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	26517089	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:59:60
chr1	26517090	.	T	.	.	PASS	END=26517125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	26517126	.	A	.	.	PASS	END=26517135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	26517136	.	G	.	.	PASS	END=26517188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	26517189	.	C	.	.	PASS	END=26517245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	26517246	.	C	.	.	PASS	END=26517280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	26517281	.	C	.	.	PASS	END=26517343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	26517344	.	C	.	.	PASS	END=26517358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:79:60
chr1	26517359	.	C	.	.	PASS	END=26517364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	26517365	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:75:60
chr1	26517366	.	T	.	.	PASS	END=26517374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	26517375	.	G	.	.	PASS	END=26517376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:39:60
chr1	26517377	.	T	.	.	PASS	END=26517382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	26517727	.	G	.	.	PASS	END=26517731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	26517732	.	T	.	.	PASS	END=26517736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:51:60
chr1	26517737	.	A	.	.	PASS	END=26517745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	26517746	.	C	.	.	PASS	END=26517767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	26517768	.	C	.	.	PASS	END=26517770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	26517771	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:39:60
chr1	26517772	.	T	.	.	PASS	END=26517779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	26517780	.	C	.	.	PASS	END=26517807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	26517808	.	C	.	.	PASS	END=26517914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:97:60
chr1	26517915	.	G	.	.	PASS	END=26517917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	26517918	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:67:60
chr1	26517919	.	C	.	.	PASS	END=26517939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	26517940	.	C	.	.	PASS	END=26517955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	26517956	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:42:60
chr1	26517957	.	T	.	.	PASS	END=26517960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	26517961	.	G	.	.	PASS	END=26517962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	26517963	.	G	.	.	PASS	END=26517972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	26520227	.	C	.	.	PASS	END=26520277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	26520278	.	A	.	.	PASS	END=26520349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	26520350	.	T	.	.	PASS	END=26520402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	26520403	.	C	.	.	PASS	END=26520418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	26520419	.	A	.	.	PASS	END=26520430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	26524126	.	C	.	.	PASS	END=26524139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	26524140	.	G	.	.	PASS	END=26524165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	26524166	.	C	.	.	PASS	END=26524195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	26524196	.	A	.	.	PASS	END=26524265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	26524266	.	C	.	.	PASS	END=26524289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	26524290	.	T	.	.	PASS	END=26524307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	26524308	.	C	.	.	PASS	END=26524321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	26524322	.	G	.	.	PASS	END=26524325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	26524397	.	G	.	.	PASS	END=26524400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr1	26524401	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:51:60
chr1	26524402	.	G	.	.	PASS	END=26524406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	26524407	.	T	.	26.89	LowGQX	DP=52;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:38:52:1.73:60:2
chr1	26524408	.	G	.	.	PASS	END=26524411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	26524412	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:30:60
chr1	26524413	.	G	.	.	PASS	END=26524489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	26524490	.	C	.	.	PASS	END=26524619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	26524726	.	A	.	.	PASS	END=26524797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	26524798	.	A	.	.	PASS	END=26524856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	26524857	.	C	.	.	PASS	END=26524879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	26524880	.	A	.	.	PASS	END=26524899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	26524900	.	A	.	.	PASS	END=26524911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	26524912	.	T	.	.	PASS	END=26524929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	26524930	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:57:60
chr1	26524931	.	C	.	.	PASS	END=26524947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	26524948	.	T	.	.	PASS	END=26524953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	26524954	.	A	.	.	PASS	END=26524961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	26526324	.	T	.	.	PASS	END=26526366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:78:60
chr1	26526367	.	A	.	.	PASS	END=26526397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	26526398	.	T	.	.	PASS	END=26526490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	26526491	.	T	.	.	PASS	END=26526519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	26526520	.	G	.	.	PASS	END=26526539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	26526540	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:75:60
chr1	26526541	.	T	.	.	PASS	END=26526560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	26526561	.	G	.	.	PASS	END=26526575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:72:60
chr1	26526576	.	G	.	.	PASS	END=26526589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	26526590	.	T	.	.	PASS	END=26526597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	26526598	.	A	.	.	PASS	END=26526600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	26527270	.	G	.	.	PASS	END=26527279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	26527280	.	G	.	.	PASS	END=26527286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	26527287	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:44:60
chr1	26527288	.	T	.	.	PASS	END=26527295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	26527296	.	C	.	.	PASS	END=26527307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	26527308	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:57:60
chr1	26527309	.	C	.	.	PASS	END=26527332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	26527333	.	G	.	.	PASS	END=26527360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:84:60
chr1	26527361	.	T	.	.	PASS	END=26527400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	26527401	.	C	.	.	PASS	END=26527489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	26527490	.	A	.	.	PASS	END=26527511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	26527512	.	G	.	.	PASS	END=26527551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	26527552	.	C	.	.	PASS	END=26527578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	26527579	.	T	.	.	PASS	END=26527583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	26527794	.	T	.	.	PASS	END=26527829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	26527830	.	C	.	.	PASS	END=26527848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	26527849	.	G	.	.	PASS	END=26527914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr1	26527915	.	T	.	.	PASS	END=26527990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr1	26527991	.	C	.	.	PASS	END=26528007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	26528008	.	A	.	.	PASS	END=26528031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	26528032	.	C	.	.	PASS	END=26528046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	26528047	.	C	.	.	PASS	END=26528053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	26528054	.	T	.	.	PASS	END=26528063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	26528064	.	C	.	.	PASS	END=26528075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:82:60
chr1	26528076	.	G	.	.	PASS	END=26528077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	26528078	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:69:60
chr1	26528079	.	C	.	.	PASS	END=26528086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	26528087	.	C	.	.	PASS	END=26528092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:59
chr1	26528093	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:57:59
chr1	26528094	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:34:59
chr1	26528095	.	A	.	.	PASS	END=26528098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:59
chr1	26528099	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:48:59
chr1	26528100	.	T	.	.	PASS	END=26528102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:59
chr1	26528929	.	T	.	.	PASS	END=26528971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	26528972	.	G	.	.	PASS	END=26529029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	26529030	.	C	.	.	PASS	END=26529057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	26529058	.	C	.	.	PASS	END=26529074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	26529075	.	A	.	.	PASS	END=26529084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	26566253	.	T	.	.	LowGQX	END=26566285	GT	./.
chr1	26566286	.	G	.	.	LowGQX	END=26566324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26566325	.	A	.	.	LowGQX	.	GT	./.
chr1	26566326	.	C	.	.	LowGQX	END=26566352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26570655	.	A	.	.	LowGQX	END=26570811	GT	./.
chr1	26581660	.	A	.	.	LowGQX	END=26582226	GT	./.
chr1	26582227	.	C	.	.	LowGQX	END=26582231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26582232	.	A	.	.	LowGQX	.	GT	./.
chr1	26582233	.	G	.	.	LowGQX	END=26582282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26582283	.	G	.	.	LowGQX	.	GT	./.
chr1	26582284	.	A	.	.	LowGQX	END=26582285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26582286	.	A	.	.	LowGQX	.	GT	./.
chr1	26582287	.	G	.	.	LowGQX	END=26582297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26582298	.	A	.	.	LowGQX	.	GT	./.
chr1	26582299	.	A	.	.	LowGQX	END=26582302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26582303	.	A	.	.	LowGQX	.	GT	./.
chr1	26582304	.	G	.	.	LowGQX	END=26582341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26582342	.	A	.	.	LowGQX	.	GT	./.
chr1	26582343	.	T	.	.	LowGQX	END=26582358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26584086	.	A	.	.	LowGQX	END=26584223	GT	./.
chr1	26584632	.	A	.	.	LowGQX	END=26584650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26584651	.	C	.	.	LowGQX	.	GT	./.
chr1	26584652	.	T	.	.	LowGQX	END=26584660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26584661	.	G	.	.	LowGQX	.	GT	./.
chr1	26584662	.	C	.	.	LowGQX	END=26584671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26584672	.	G	.	.	LowGQX	.	GT	./.
chr1	26584673	.	A	.	.	LowGQX	END=26584690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26584691	.	C	.	.	LowGQX	.	GT	./.
chr1	26584692	.	C	.	.	LowGQX	END=26584716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26584717	.	C	.	.	LowGQX	END=26584718	GT	./.
chr1	26584719	.	C	.	.	LowGQX	END=26584729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26584730	.	T	.	.	LowGQX	END=26584753	GT	./.
chr1	26586106	.	A	.	.	LowGQX	END=26586146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26586147	.	G	.	.	LowGQX	END=26586295	GT	./.
chr1	26594912	.	G	.	.	LowGQX	END=26595025	GT	./.
chr1	26595026	.	A	.	.	LowGQX	END=26595038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26595039	.	C	.	.	LowGQX	.	GT	./.
chr1	26595040	.	C	.	.	LowGQX	END=26595045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26595046	.	A	.	.	LowGQX	.	GT	./.
chr1	26595047	.	A	.	.	LowGQX	END=26595069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26595070	.	G	.	.	LowGQX	.	GT	./.
chr1	26595071	.	A	.	.	LowGQX	END=26595074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26595075	.	C	.	.	LowGQX	.	GT	./.
chr1	26595076	.	T	.	.	LowGQX	END=26595078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26595079	.	C	.	.	LowGQX	.	GT	./.
chr1	26595080	.	T	.	.	LowGQX	END=26595094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26595095	.	C	.	.	LowGQX	.	GT	./.
chr1	26595096	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26595097	.	C	.	.	LowGQX	.	GT	./.
chr1	26595098	.	T	.	.	LowGQX	END=26595103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26595104	.	A	.	.	LowGQX	.	GT	./.
chr1	26595105	.	C	.	.	LowGQX	END=26595117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26595118	.	A	.	.	LowGQX	.	GT	./.
chr1	26595119	.	G	.	.	LowGQX	END=26595128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26595949	.	A	.	.	LowGQX	END=26595973	GT	./.
chr1	26595974	.	C	.	.	LowGQX	END=26596009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26596010	.	T	.	.	LowGQX	.	GT	./.
chr1	26596011	.	T	.	.	LowGQX	END=26596058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26596059	.	G	.	.	LowGQX	.	GT	./.
chr1	26596060	.	A	.	.	LowGQX	END=26596104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26596105	.	G	.	.	LowGQX	.	GT	./.
chr1	26596106	.	G	.	.	LowGQX	END=26596107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26597502	.	C	.	.	LowGQX	END=26597601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26598488	.	T	.	.	LowGQX	END=26598496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26598497	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26598498	.	A	.	.	LowGQX	END=26598502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26598503	.	G	.	.	LowGQX	.	GT	./.
chr1	26598504	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26598505	.	C	.	.	LowGQX	.	GT	./.
chr1	26598506	.	T	.	.	LowGQX	END=26598517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26598518	.	G	.	.	LowGQX	.	GT	./.
chr1	26598519	.	A	.	.	LowGQX	END=26598544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26598545	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26598546	.	T	.	.	LowGQX	END=26598547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26598548	.	C	.	.	LowGQX	.	GT	./.
chr1	26598549	.	G	.	.	LowGQX	END=26598569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26598570	.	G	.	.	LowGQX	.	GT	./.
chr1	26598571	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26598572	.	A	.	.	LowGQX	.	GT	./.
chr1	26598573	.	A	.	.	LowGQX	END=26598575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26598576	.	C	.	.	LowGQX	.	GT	./.
chr1	26598577	.	T	.	.	LowGQX	END=26598582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26598583	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26598584	.	A	.	.	LowGQX	END=26598587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26601453	.	A	.	.	LowGQX	END=26601564	GT	./.
chr1	26603024	.	A	.	.	LowGQX	END=26603077	GT	./.
chr1	26603078	.	A	.	.	LowGQX	END=26603214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26603215	.	C	.	.	LowGQX	END=26603253	GT	./.
chr1	26603622	.	A	.	.	LowGQX	END=26603678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26603679	.	G	.	.	LowGQX	END=26603786	GT	./.
chr1	26606239	.	G	.	.	LowGQX	END=26606561	GT	./.
chr1	26606562	.	G	.	.	LowGQX	END=26606696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26607254	.	A	.	.	LowGQX	END=26607474	GT	./.
chr1	26607532	.	C	.	.	LowGQX	END=26607631	GT	./.
chr1	26608774	.	T	.	.	LowGQX	.	GT	./.
chr1	26608775	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26608776	.	A	.	.	LowGQX	.	GT	./.
chr1	26608777	.	G	.	.	LowGQX	END=26608781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26608782	.	C	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	26608783	.	G	.	.	LowGQX	END=26608787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26608788	.	C	.	.	LowGQX	END=26608789	GT	./.
chr1	26608790	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26608791	.	T	.	.	LowGQX	.	GT	./.
chr1	26608792	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26608793	.	T	.	.	LowGQX	END=26608794	GT	./.
chr1	26608795	.	G	.	.	LowGQX	END=26608804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26608805	.	A	.	.	LowGQX	END=26608807	GT	./.
chr1	26608808	.	G	.	.	LowGQX	END=26608810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26608811	.	T	.	.	LowGQX	.	GT	./.
chr1	26608812	.	C	.	.	LowGQX	END=26608813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26608814	.	A	.	.	LowGQX	END=26608865	GT	./.
chr1	26608866	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26608867	.	C	.	.	LowGQX	.	GT	./.
chr1	26608868	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26608869	.	G	.	.	LowGQX	END=26608873	GT	./.
chr1	26608874	.	G	.	.	LowGQX	END=26608878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26608879	.	C	.	.	LowGQX	.	GT	./.
chr1	26608880	.	G	.	.	LowGQX	END=26608882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26608883	.	A	G	3.07	LowGQX;LowQD;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=1.53;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:30,0,33:60:3:0.500
chr1	26608884	.	C	.	.	LowGQX	END=26608965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26608966	.	G	T	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	26608967	.	C	.	.	LowGQX	END=26609034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26609035	.	T	.	.	LowGQX	.	GT	./.
chr1	26609036	.	C	.	.	LowGQX	END=26609062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26609138	.	A	.	.	LowGQX	END=26609282	GT	./.
chr1	26609342	.	A	.	.	LowGQX	END=26609441	GT	./.
chr1	26610631	.	A	.	.	LowGQX	END=26610738	GT	./.
chr1	26610801	.	G	.	.	LowGQX	END=26610975	GT	./.
chr1	26611831	.	A	.	.	LowGQX	END=26611973	GT	./.
chr1	26611974	.	G	.	.	LowGQX	END=26611976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26611977	.	T	.	.	LowGQX	.	GT	./.
chr1	26611978	.	A	.	.	LowGQX	END=26611986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26611987	.	G	.	.	LowGQX	.	GT	./.
chr1	26611988	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26611989	.	A	.	.	LowGQX	.	GT	./.
chr1	26611990	.	G	.	.	LowGQX	END=26611992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26611993	.	C	.	.	LowGQX	.	GT	./.
chr1	26611994	.	T	.	.	LowGQX	END=26611996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26611997	.	G	.	.	LowGQX	.	GT	./.
chr1	26611998	.	G	.	.	LowGQX	END=26612034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26612312	.	A	.	.	LowGQX	END=26612314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26612315	.	T	.	.	LowGQX	.	GT	./.
chr1	26612316	.	G	.	.	LowGQX	END=26612326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26612327	.	T	.	.	LowGQX	.	GT	./.
chr1	26612328	.	C	.	.	LowGQX	END=26612331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26612332	.	G	.	.	LowGQX	.	GT	./.
chr1	26612333	.	A	.	.	LowGQX	END=26612338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26612339	.	T	.	.	LowGQX	.	GT	./.
chr1	26612340	.	G	.	.	LowGQX	END=26612345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26612346	.	G	.	.	LowGQX	.	GT	./.
chr1	26612347	.	C	.	.	LowGQX	END=26612394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26612395	.	C	.	.	LowGQX	END=26612408	GT	./.
chr1	26612409	.	G	.	.	LowGQX	END=26612459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26612460	.	G	A	7.08	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=3.54;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:36,3,0:60:3:1.000
chr1	26612461	.	C	.	.	LowGQX	END=26612503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26612504	.	A	.	.	LowGQX	.	GT	./.
chr1	26612505	.	C	.	.	LowGQX	END=26612528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26612529	.	C	A	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	26612530	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26620683	.	C	.	.	LowGQX	END=26620824	GT	./.
chr1	26623399	.	A	.	.	LowGQX	END=26623498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26623896	.	C	.	.	LowGQX	END=26623995	GT	./.
chr1	26624451	.	A	.	.	LowGQX	END=26624471	GT	./.
chr1	26624472	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26624473	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26624474	.	C	.	.	LowGQX	END=26624555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26627415	.	A	.	.	LowGQX	END=26627517	GT	./.
chr1	26628150	.	G	.	.	LowGQX	END=26628249	GT	./.
chr1	26629290	.	G	.	.	LowGQX	END=26629389	GT	./.
chr1	26644486	.	A	.	.	LowGQX	END=26644585	GT	./.
chr1	26646600	.	G	.	.	LowGQX	END=26646795	GT	./.
chr1	26648454	.	A	.	.	LowGQX	END=26648553	GT	./.
chr1	26648653	.	A	.	.	LowGQX	END=26648816	GT	./.
chr1	26650641	.	A	.	.	LowGQX	END=26650803	GT	./.
chr1	26654698	.	A	.	.	LowGQX	END=26654825	GT	./.
chr1	26655223	.	A	.	.	LowGQX	END=26655256	GT	./.
chr1	26655257	.	G	.	.	LowGQX	END=26655402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26657978	.	A	.	.	LowGQX	END=26657981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26657982	.	G	.	.	LowGQX	END=26657983	GT	./.
chr1	26657984	.	G	.	.	LowGQX	END=26658005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26658006	.	G	.	.	LowGQX	.	GT	./.
chr1	26658007	.	G	.	.	LowGQX	END=26658016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26658017	.	G	.	.	LowGQX	.	GT	./.
chr1	26658018	.	C	.	.	LowGQX	END=26658039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26658040	.	A	.	.	LowGQX	END=26658111	GT	./.
chr1	26662584	.	A	.	.	LowGQX	END=26662743	GT	./.
chr1	26662796	.	G	.	.	LowGQX	END=26663288	GT	./.
chr1	26663330	.	A	.	.	LowGQX	END=26663473	GT	./.
chr1	26663742	.	A	.	.	LowGQX	END=26663850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26663851	.	C	.	.	LowGQX	END=26663863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	26663864	.	C	.	.	LowGQX	END=26663872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26664027	.	A	.	.	LowGQX	END=26664101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26664102	.	T	.	.	LowGQX	END=26664167	GT	./.
chr1	26664471	.	G	.	.	LowGQX	END=26664570	GT	./.
chr1	26664840	.	A	.	.	LowGQX	END=26664857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26664858	.	A	.	.	LowGQX	.	GT	./.
chr1	26664859	.	G	.	.	LowGQX	END=26664866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26664867	.	A	.	.	LowGQX	.	GT	./.
chr1	26664868	.	C	.	.	LowGQX	END=26664891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26664892	.	C	.	.	LowGQX	.	GT	./.
chr1	26664893	.	C	.	.	LowGQX	END=26664908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26664909	.	T	.	.	LowGQX	.	GT	./.
chr1	26664910	.	C	.	.	LowGQX	END=26664919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26664920	.	C	.	.	LowGQX	.	GT	./.
chr1	26664921	.	A	.	.	LowGQX	END=26664924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26664925	.	T	.	.	LowGQX	.	GT	./.
chr1	26664926	.	G	.	.	LowGQX	END=26664937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26664938	.	T	.	.	LowGQX	.	GT	./.
chr1	26664939	.	T	.	.	LowGQX	END=26664964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26664965	.	C	.	.	LowGQX	END=26664970	GT	./.
chr1	26665779	.	A	.	.	LowGQX	END=26665967	GT	./.
chr1	26669243	.	A	.	.	LowGQX	END=26669374	GT	./.
chr1	26669537	.	C	.	.	LowGQX	END=26669650	GT	./.
chr1	26669711	.	C	.	.	LowGQX	END=26669810	GT	./.
chr1	26670235	.	C	.	.	LowGQX	END=26670475	GT	./.
chr1	26670476	.	T	.	.	LowGQX	END=26670482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26670483	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26670484	.	C	.	.	LowGQX	END=26670602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26670603	.	T	.	.	LowGQX	.	GT	./.
chr1	26670604	.	G	.	.	LowGQX	END=26670608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26670609	.	C	.	.	LowGQX	.	GT	./.
chr1	26670610	.	G	.	.	LowGQX	END=26670611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26670612	.	T	.	.	LowGQX	.	GT	./.
chr1	26670613	.	G	.	.	LowGQX	END=26670614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26670615	.	A	.	.	LowGQX	.	GT	./.
chr1	26670616	.	G	.	.	LowGQX	END=26670618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26670619	.	T	.	.	LowGQX	.	GT	./.
chr1	26670620	.	C	.	.	LowGQX	END=26670622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26670623	.	A	.	.	LowGQX	.	GT	./.
chr1	26670624	.	T	.	.	LowGQX	END=26670630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26670631	.	T	.	.	LowGQX	.	GT	./.
chr1	26670632	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26670633	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26670634	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26670635	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26670636	.	T	.	.	LowGQX	END=26670649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26670650	.	T	.	.	LowGQX	END=26670651	GT	./.
chr1	26670652	.	C	.	.	LowGQX	END=26670655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26670656	.	C	.	.	LowGQX	.	GT	./.
chr1	26670657	.	T	.	.	LowGQX	END=26670677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26670678	.	T	.	.	LowGQX	.	GT	./.
chr1	26670679	.	C	.	.	LowGQX	END=26670710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26670711	.	A	.	.	LowGQX	.	GT	./.
chr1	26670712	.	G	.	.	LowGQX	END=26670713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26670714	.	A	.	.	LowGQX	.	GT	./.
chr1	26670715	.	C	.	.	LowGQX	END=26670717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26670718	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26670719	.	T	.	.	LowGQX	END=26670732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26670733	.	C	.	.	LowGQX	.	GT	./.
chr1	26670734	.	C	.	.	LowGQX	END=26670753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26670754	.	T	.	.	LowGQX	.	GT	./.
chr1	26670755	.	G	.	.	LowGQX	END=26670767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26670768	.	A	.	.	LowGQX	END=26671163	GT	./.
chr1	26671164	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26671165	.	C	.	.	LowGQX	.	GT	./.
chr1	26671166	.	C	.	.	LowGQX	END=26671169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26671170	.	G	.	.	LowGQX	.	GT	./.
chr1	26671171	.	T	.	.	LowGQX	END=26671185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26671186	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26671187	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26671188	.	C	.	.	LowGQX	END=26671189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26671190	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26671191	.	C	.	.	LowGQX	END=26671232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26671233	.	C	A	4.99	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.50;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:19.67:33,0,20:60:5:0.500
chr1	26671234	.	C	.	.	LowGQX	END=26671254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26671255	.	C	.	.	LowGQX	END=26671260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	26671261	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	26671262	.	C	.	.	LowGQX	END=26671267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	26671268	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	26671269	.	G	.	.	LowGQX	END=26671275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	26671276	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	26671277	.	A	.	.	LowGQX	END=26671285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	26671286	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	26671287	.	C	.	.	LowGQX	END=26671310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:54
chr1	26671311	.	T	.	.	LowGQX	END=26671312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:52
chr1	26671313	.	G	.	.	LowGQX	END=26671318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:52
chr1	26671319	.	A	.	.	LowGQX	.	GT	./.
chr1	26671320	.	G	.	.	LowGQX	END=26671325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:53
chr1	26671326	.	G	.	33	LowGQX	DP=3;MQ=50;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:50:3
chr1	26671327	.	C	.	.	LowGQX	END=26671333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:50
chr1	26671334	.	A	.	33	LowGQX	DP=3;MQ=50;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:50:3
chr1	26671335	.	G	.	.	LowGQX	END=26671338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:50
chr1	26671339	.	A	.	.	LowGQX	.	GT	./.
chr1	26671340	.	G	.	33	LowGQX	DP=3;MQ=50;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:50:3
chr1	26671341	.	G	.	.	LowGQX	END=26671362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:50
chr1	26671363	.	G	.	.	LowGQX	END=26671379	GT	./.
chr1	26671380	.	G	.	.	LowGQX	END=26671386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26671387	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	26671388	.	A	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.30:33,0,33:60:5:0.333
chr1	26671389	.	C	.	.	LowGQX	END=26671398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	26671399	.	T	.	8.18	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.02:60:0
chr1	26671400	.	C	.	.	LowGQX	END=26671402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	26671403	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	26671404	.	A	.	.	LowGQX	END=26671408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	26671409	.	T	.	.	LowGQX	END=26671410	GT	./.
chr1	26671411	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	26671412	.	T	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr1	26671413	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	26671414	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:3.01:60:3
chr1	26671415	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	26671416	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	26671417	.	T	.	.	LowGQX	END=26671419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	26671420	.	T	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	26671421	.	G	.	.	LowGQX	END=26671422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	26671423	.	A	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	26671424	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	26671425	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	26671426	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	26671427	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	26671428	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	26671429	.	C	.	.	LowGQX	END=26671434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	26671435	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	26671436	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	26671437	.	G	.	.	LowGQX	END=26671438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	26671439	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	26671440	.	C	.	39.02	LowGQX	DP=5;MQ=55;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:55:9
chr1	26671441	.	C	.	.	LowGQX	END=26671443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:55
chr1	26671444	.	A	.	42.03	LowGQX	DP=5;MQ=55;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:55:12
chr1	26671445	.	C	.	.	LowGQX	END=26671447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:51
chr1	26671448	.	C	.	.	LowGQX	END=26671453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:51
chr1	26671454	.	C	.	.	LowGQX	END=26671456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:51
chr1	26671457	.	C	.	.	LowGQX	END=26671458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:51
chr1	26671459	.	C	.	.	LowGQX	END=26671461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:51
chr1	26671462	.	T	.	.	LowGQX	END=26671463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:51
chr1	26671464	.	T	.	36.01	LowGQX	DP=5;MQ=55;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:5:6.02:55:6
chr1	26671465	.	G	.	36.01	LowGQX	DP=5;MQ=55;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:55:6
chr1	26671466	.	G	.	.	LowGQX	END=26671468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:55
chr1	26671469	.	G	.	.	LowGQX	END=26671470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:55
chr1	26671471	.	G	.	39.02	LowGQX	DP=5;MQ=55;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:55:9
chr1	26671472	.	G	C	3.07	LowGQ;LowGQX;LowQD;SB	BaseQRankSum=0.358;DP=5;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.6815;MQ=55;MQ0=0;MQRankSum=-1.231;QD=0.61;ReadPosRankSum=-0.358;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,2:5:25.53:30,0,26:55:3:0.400
chr1	26671473	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:55
chr1	26671474	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:55
chr1	26671475	.	T	.	39.02	LowGQX	DP=5;MQ=55;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:55:9
chr1	26671476	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:55
chr1	26671477	.	A	.	39.02	LowGQX	DP=5;MQ=55;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:55:9
chr1	26671478	.	G	.	.	LowGQX	END=26671482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:55
chr1	26671483	.	C	.	42.03	LowGQX	DP=5;MQ=55;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:55:12
chr1	26671484	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:55
chr1	26671485	.	G	.	39.02	LowGQX	DP=5;MQ=55;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:5:9.03:55:9
chr1	26671486	.	G	.	.	LowGQX	END=26671489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:55
chr1	26671490	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:55
chr1	26671491	.	C	.	.	LowGQX	END=26671492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:55
chr1	26671493	.	A	.	39.02	LowGQX	DP=5;MQ=55;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:5:9.03:55:9
chr1	26671494	.	G	.	.	LowGQX	END=26671497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:55
chr1	26671498	.	C	.	39.02	LowGQX	DP=5;MQ=55;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:55:9
chr1	26671499	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:55
chr1	26671500	.	T	.	36.01	LowGQX	DP=5;MQ=55;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:55:6
chr1	26671501	.	T	.	.	LowGQX	END=26671504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:54
chr1	26671505	.	A	.	36.01	LowGQX	DP=4;MQ=54;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:54:6
chr1	26671506	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:54
chr1	26671507	.	C	.	.	LowGQX	END=26671510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:52
chr1	26671511	.	T	.	.	LowGQX	END=26671522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	26671523	.	A	.	.	LowGQX	END=26671568	GT	./.
chr1	26671569	.	G	.	.	LowGQX;LowMQ	END=26671616	GT	./.
chr1	26671617	.	T	.	.	LowGQX	END=26671622	GT	./.
chr1	26671623	.	G	.	.	LowGQX	END=26671624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:35
chr1	26671625	.	A	.	.	LowGQX	END=26671626	GT	./.
chr1	26671627	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:35
chr1	26671628	.	T	.	.	LowGQX	.	GT	./.
chr1	26671629	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:35
chr1	26671630	.	A	.	.	LowGQX	END=26671631	GT	./.
chr1	26671632	.	G	.	.	LowGQX	END=26671633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:35
chr1	26671634	.	A	.	.	LowGQX	.	GT	./.
chr1	26671635	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:35
chr1	26671636	.	C	.	.	LowGQX	END=26671637	GT	./.
chr1	26671638	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:35
chr1	26671639	.	G	.	.	LowGQX	END=26671641	GT	./.
chr1	26671642	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:35
chr1	26671643	.	A	.	.	LowGQX	END=26671645	GT	./.
chr1	26671646	.	A	.	33	LowGQX	DP=2;MQ=42;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:42:3
chr1	26671647	.	G	.	.	LowGQX	.	GT	./.
chr1	26671648	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26671649	.	G	.	.	LowGQX	.	GT	./.
chr1	26671650	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26671651	.	C	.	.	LowGQX	END=26671652	GT	./.
chr1	26671653	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26671654	.	T	.	.	LowGQX	END=26671657	GT	./.
chr1	26671658	.	G	.	.	LowGQX	END=26671660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26671661	.	C	.	.	LowGQX	.	GT	./.
chr1	26671662	.	T	.	.	LowGQX	END=26671666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26671667	.	C	.	.	LowGQX	END=26671668	GT	./.
chr1	26671669	.	A	.	.	LowGQX	END=26671689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26671690	.	A	.	.	LowGQX	END=26671697	GT	./.
chr1	26671698	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:49
chr1	26671699	.	A	.	.	LowGQX	.	GT	./.
chr1	26671700	.	C	.	.	LowGQX	END=26671713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:41
chr1	26671714	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:37
chr1	26671715	.	C	.	9.43	LowGQX	DP=7;MQ=37;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:7:0.03:37:0
chr1	26671716	.	T	.	.	LowGQX	END=26671718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:37
chr1	26671719	.	C	T	25.27	LowGQ;LowGQX	BaseQRankSum=0.720;DP=7;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.2232;MQ=37;MQ0=0;MQRankSum=0.720;QD=3.61;ReadPosRankSum=0.720;SB=-25.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,4:7:27.11:55,0,27:37:25:0.667
chr1	26671720	.	G	.	.	LowGQX	END=26671726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:37
chr1	26671727	.	A	.	39.02	LowGQX	DP=6;MQ=37;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:6:9.03:37:9
chr1	26671728	.	G	.	.	LowGQX	END=26671736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:37
chr1	26671737	.	G	.	.	LowGQX	END=26671746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:46
chr1	26671747	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:6:48
chr1	26671748	.	G	.	.	LowGQX	END=26671759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:48
chr1	26671760	.	G	.	45.04	LowGQX	DP=9;MQ=49;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:15.05:49:15
chr1	26671761	.	A	.	.	LowGQX	END=26671766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:49
chr1	26671767	.	C	.	45.04	LowGQX	DP=9;MQ=49;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:15.05:49:15
chr1	26671768	.	T	.	.	LowGQX	END=26671776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:49
chr1	26671777	.	A	.	.	LowGQX	END=26671782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:57
chr1	26671783	.	G	.	39.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.02:60:9
chr1	26671784	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	26671785	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	26671786	.	C	.	.	LowGQX	END=26671790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	26671791	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	26671792	.	C	.	.	LowGQX	END=26671795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	26671796	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	26671797	.	T	.	.	LowGQX	END=26671802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	26671803	.	T	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	26671804	.	T	.	.	LowGQX	END=26671807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	26671808	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	26671809	.	A	.	.	LowGQX	END=26671870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	26671871	.	T	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	26671872	.	C	.	.	LowGQX	END=26671894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	26671895	.	T	.	.	LowGQX	END=26671906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	26671907	.	T	.	.	LowGQX	END=26671955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26671956	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26671957	.	C	.	.	LowGQX	END=26671969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26671970	.	C	.	.	LowGQX	.	GT	./.
chr1	26671971	.	T	.	.	LowGQX	END=26671978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26671979	.	A	.	.	LowGQX	.	GT	./.
chr1	26671980	.	G	.	.	LowGQX	END=26671986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26671987	.	G	.	.	LowGQX	.	GT	./.
chr1	26671988	.	A	.	.	LowGQX	END=26672214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26672215	.	A	.	.	LowGQX	END=26672657	GT	./.
chr1	26672658	.	C	.	.	LowGQX	END=26672774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26672775	.	C	.	.	LowGQX	.	GT	./.
chr1	26672776	.	G	.	.	LowGQX	END=26672782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26672783	.	A	.	.	LowGQX	END=26672784	GT	./.
chr1	26672785	.	C	.	.	LowGQX	END=26672794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26672795	.	C	.	.	LowGQX	.	GT	./.
chr1	26672796	.	A	.	.	LowGQX	END=26672797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26672798	.	A	.	.	LowGQX	.	GT	./.
chr1	26672799	.	G	.	.	LowGQX	END=26672807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26672808	.	A	.	.	LowGQX	END=26672840	GT	./.
chr1	26672841	.	G	.	.	LowGQX	END=26672894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26672895	.	G	.	13.53	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.09:60:0
chr1	26672896	.	C	.	.	LowGQX	END=26672999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	26673000	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	26673001	.	G	.	.	LowGQX	END=26673015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	26673016	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	26673017	.	C	.	.	LowGQX	END=26673025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	26673026	.	C	.	.	LowGQX	END=26673033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26673034	.	C	.	.	LowGQX	END=26673035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	26673036	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	26673037	.	T	.	.	LowGQX	END=26673045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	26673046	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26673047	.	A	.	.	LowGQX	END=26673087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	26673088	.	T	.	.	LowGQX	END=26673089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	26673090	.	A	.	.	LowGQX	END=26673102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	26673103	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	26673104	.	C	.	.	LowGQX	END=26673105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	26673106	.	C	.	.	LowGQX	END=26673130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	26673131	.	C	.	.	LowGQX	END=26673148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	26688141	.	T	.	.	LowGQX	END=26688175	GT	./.
chr1	26688176	.	G	.	.	LowGQX	END=26688219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26688220	.	T	.	.	LowGQX	END=26688513	GT	./.
chr1	26688587	.	T	.	.	LowGQX	END=26688604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26688605	.	A	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	26688606	.	C	.	.	LowGQX	END=26688649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26688650	.	C	.	.	LowGQX	.	GT	./.
chr1	26688651	.	C	.	.	LowGQX	END=26688686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26689516	.	C	.	.	LowGQX	END=26689645	GT	./.
chr1	26691022	.	C	.	.	LowGQX	END=26691136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26691137	.	C	.	.	LowGQX	.	GT	./.
chr1	26691138	.	A	.	.	LowGQX	END=26691139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26691140	.	T	.	.	LowGQX	.	GT	./.
chr1	26691141	.	G	.	.	LowGQX	END=26691165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26691166	.	T	.	.	LowGQX	.	GT	./.
chr1	26691167	.	G	.	.	LowGQX	END=26691173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26691174	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	26691175	.	G	.	.	LowGQX	END=26691196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26691197	.	T	.	.	LowGQX	.	GT	./.
chr1	26691198	.	G	.	.	LowGQX	END=26691270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26691271	.	A	.	.	LowGQX	END=26691717	GT	./.
chr1	26694083	.	C	.	.	LowGQX	END=26694288	GT	./.
chr1	26694948	.	C	.	.	LowGQX	END=26695073	GT	./.
chr1	26698983	.	A	.	.	LowGQX	END=26699082	GT	./.
chr1	26700726	.	A	.	.	LowGQX	END=26700825	GT	./.
chr1	26737289	.	G	.	.	PASS	END=26737388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	26737389	.	T	.	.	PASS	END=26737419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	26737420	.	G	.	.	PASS	END=26737448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	26737865	.	C	.	.	PASS	END=26737885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	26737886	.	C	.	.	PASS	END=26737953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	26737954	.	C	.	.	PASS	END=26737998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	26737999	.	G	.	.	PASS	END=26738070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	26738071	.	C	.	.	PASS	END=26738084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	26751792	.	A	.	.	PASS	END=26751836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	26751837	.	A	.	.	PASS	END=26751849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	26751850	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:69:60
chr1	26751851	.	A	.	.	PASS	END=26751940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	26751941	.	G	.	.	PASS	END=26751970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	26751971	.	G	.	.	PASS	END=26751975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	26751976	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:30:60
chr1	26751977	.	A	.	.	PASS	END=26751980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	26752731	.	A	.	.	PASS	END=26752743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	26752744	.	G	.	.	PASS	END=26752766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	26752767	.	A	.	.	PASS	END=26752781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	26752782	.	C	.	.	PASS	END=26752907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	26752908	.	G	.	.	PASS	END=26752926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	26752927	.	T	.	.	PASS	END=26752951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	26759386	.	C	.	.	PASS	END=26759393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chr1	26759394	.	G	.	.	PASS	END=26759413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	26759414	.	G	.	.	PASS	END=26759452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	26759453	.	A	.	.	PASS	END=26759486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	26759487	.	C	.	.	PASS	END=26759510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	26759511	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:24:60
chr1	26759512	.	C	.	.	PASS	END=26759515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	26759516	.	A	.	.	PASS	END=26759517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	26759518	.	C	.	.	PASS	END=26759536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	26759537	.	C	.	.	PASS	END=26759550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	26764608	.	T	.	.	PASS	END=26764625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	26764626	.	G	.	.	PASS	END=26764649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	26764650	.	A	.	.	PASS	END=26764721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	26764722	.	T	.	.	PASS	END=26764752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:87:60
chr1	26764753	.	A	.	.	PASS	END=26764777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	26764778	.	G	.	.	PASS	END=26764790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	26764791	.	A	.	.	PASS	END=26764801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	26764802	.	T	.	.	PASS	END=26764805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	26764806	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:15:60
chr1	26764807	.	A	.	.	PASS	END=26764810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	26764811	.	T	.	.	PASS	END=26764817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	26764818	.	A	.	.	PASS	END=26764826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	26769161	.	T	.	.	PASS	END=26769178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	26769179	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:9:60
chr1	26769180	.	A	.	.	PASS	END=26769191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	26769192	.	A	.	.	PASS	END=26769205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	26769206	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:40:60
chr1	26769207	.	C	.	.	PASS	END=26769213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	26769214	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:33:60
chr1	26769215	.	C	.	.	PASS	END=26769240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	26769241	.	A	.	.	PASS	END=26769249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	26769250	.	T	.	.	PASS	END=26769267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	26769268	.	A	.	.	PASS	END=26769332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr1	26769333	.	C	.	.	PASS	END=26769373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	26769374	.	T	.	.	PASS	END=26769393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	26769394	.	T	.	.	PASS	END=26769397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	26769398	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:30:60
chr1	26769399	.	C	.	.	PASS	END=26769404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	26769405	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:12:60
chr1	26769406	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:51:60
chr1	26769407	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:28:60
chr1	26769408	.	C	.	.	PASS	END=26769415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	26772756	.	C	.	.	PASS	END=26772777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	26772778	.	T	.	.	PASS	END=26772864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	26772865	.	C	.	.	PASS	END=26772906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	26772907	.	A	.	.	PASS	END=26772947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	26772948	.	G	.	.	PASS	END=26772974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	26773999	.	T	.	.	PASS	END=26774035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	26774036	.	T	.	.	PASS	END=26774114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	26774115	.	T	.	.	PASS	END=26774137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	26774138	.	C	.	.	PASS	END=26774157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	26774158	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:51:60
chr1	26774159	.	G	.	.	PASS	END=26774186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	26774187	.	A	.	.	PASS	END=26774201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	26774202	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:36:60
chr1	26774203	.	A	.	.	PASS	END=26774227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	26774228	.	C	.	.	PASS	END=26774231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	26774232	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:20:60
chr1	26774233	.	A	.	.	PASS	END=26774240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	26774241	.	A	.	.	PASS	END=26774245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	26774764	.	A	.	.	LowGQX	END=26774923	GT	./.
chr1	26784231	.	G	.	.	PASS	END=26784262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	26784263	.	C	.	.	PASS	END=26784316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	26784317	.	A	.	.	PASS	END=26784387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	26784388	.	C	.	.	PASS	END=26784436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	26784437	.	A	.	.	PASS	END=26784447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	26786477	.	G	.	.	PASS	END=26786508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	26786509	.	T	.	.	PASS	END=26786563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:60
chr1	26786564	.	T	.	.	PASS	END=26786592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	26786593	.	C	.	.	PASS	END=26786654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	26786655	.	T	.	.	PASS	END=26786686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	26793780	.	G	.	.	LowGQX	END=26793879	GT	./.
chr1	26795332	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	26795333	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	26795334	.	A	.	45.04	LowGQX	DP=13;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:9:13:15.05:60:15
chr1	26795335	.	C	.	.	PASS	END=26795337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	26795338	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	26795339	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:39:60
chr1	26795340	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	26795341	.	C	.	.	PASS	END=26795342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	26795343	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	26795344	.	A	.	.	PASS	END=26795350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	26795351	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:21:60
chr1	26795352	.	T	.	.	PASS	END=26795357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	26795358	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:45:60
chr1	26795359	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:60
chr1	26795360	.	C	.	.	PASS	END=26795370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	26795371	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:14:60
chr1	26795372	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:54:60
chr1	26795373	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr1	26795374	.	T	.	.	PASS	END=26795378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	26795379	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:9:60
chr1	26795380	.	T	.	.	PASS	END=26795385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	26795386	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:45:60
chr1	26795387	.	A	.	.	PASS	END=26795390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	26795391	.	C	.	.	PASS	END=26795396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	26795397	.	C	.	.	PASS	END=26795401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	26795402	.	A	.	.	PASS	END=26795436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:60
chr1	26795437	.	G	.	.	PASS	END=26795452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	26795453	.	C	.	.	PASS	END=26795487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	26795488	.	G	.	.	PASS	END=26795563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	26795564	.	A	.	.	PASS	END=26795601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	26795602	.	C	.	.	PASS	END=26795619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:90:60
chr1	26795620	.	T	.	.	PASS	END=26795655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	26795656	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr1	26795657	.	C	.	.	PASS	END=26795671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	26795672	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:63:60
chr1	26795673	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:99:60
chr1	26799002	.	G	.	.	LowGQX	END=26799161	GT	./.
chr1	26799947	.	G	.	.	LowGQX	END=26800046	GT	./.
chr1	26800159	.	T	.	.	LowGQX	END=26800258	GT	./.
chr1	26800552	.	T	.	.	LowGQX	END=26800651	GT	./.
chr1	26801061	.	A	.	.	LowGQX	END=26801160	GT	./.
chr1	26801572	.	C	.	.	LowGQX	END=26801671	GT	./.
chr1	26856334	.	A	.	.	LowGQX	END=26856493	GT	./.
chr1	26857236	.	A	.	.	LowGQX	END=26857340	GT	./.
chr1	26863389	.	T	.	.	LowGQX	END=26863414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26863415	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	26863416	.	A	.	.	LowGQX	END=26863488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26869633	.	T	.	.	LowGQX	END=26869732	GT	./.
chr1	26870566	.	G	.	.	LowGQX	END=26870669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26872350	.	C	.	.	LowGQX	END=26872569	GT	./.
chr1	26873356	.	A	.	.	LowGQX	END=26873476	GT	./.
chr1	26873671	.	C	.	.	LowGQX	END=26873770	GT	./.
chr1	26877879	.	T	.	.	LowGQX	END=26877884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26877885	.	C	.	.	LowGQX	END=26877955	GT	./.
chr1	26877956	.	A	.	.	LowGQX	END=26877967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26877968	.	G	.	.	LowGQX	.	GT	./.
chr1	26877969	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26877970	.	T	.	.	LowGQX	.	GT	./.
chr1	26877971	.	A	.	.	LowGQX	END=26877978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26878125	.	C	.	.	LowGQX	END=26878146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26878147	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26878148	.	G	.	.	LowGQX	END=26878224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26879299	.	G	.	.	LowGQX	END=26879398	GT	./.
chr1	26879880	.	A	.	.	LowGQX	END=26879990	GT	./.
chr1	26880674	.	A	.	.	LowGQX	END=26880773	GT	./.
chr1	26881085	.	A	.	.	LowGQX	END=26881086	GT	./.
chr1	26881087	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26881088	.	C	.	.	LowGQX	END=26881091	GT	./.
chr1	26881092	.	G	.	.	LowGQX	END=26881095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26881096	.	T	.	.	LowGQX	END=26881098	GT	./.
chr1	26881099	.	G	.	.	LowGQX	END=26881110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26881111	.	T	.	.	LowGQX	END=26881112	GT	./.
chr1	26881113	.	G	.	.	LowGQX	END=26881116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26881117	.	A	.	.	LowGQX	.	GT	./.
chr1	26881118	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26881119	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26881120	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26881121	.	G	.	.	LowGQX	.	GT	./.
chr1	26881122	.	A	.	.	LowGQX	END=26881124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26881125	.	A	.	.	LowGQX	.	GT	./.
chr1	26881126	.	A	.	.	LowGQX	END=26881128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26881129	.	C	.	.	LowGQX	.	GT	./.
chr1	26881130	.	C	.	.	LowGQX	END=26881131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26881132	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26881133	.	T	.	.	LowGQX	END=26881140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26881141	.	G	.	.	LowGQX	.	GT	./.
chr1	26881142	.	C	.	.	LowGQX	END=26881143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26881144	.	G	T	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	26881145	.	G	.	.	LowGQX	.	GT	./.
chr1	26881146	.	A	.	.	LowGQX	END=26881151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26881152	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26881153	.	A	.	.	LowGQX	END=26881157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26881158	.	A	.	.	LowGQX	.	GT	./.
chr1	26881159	.	T	.	.	LowGQX	END=26881160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26881161	.	G	.	.	LowGQX	.	GT	./.
chr1	26881162	.	C	.	.	LowGQX	END=26881168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26881169	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26881170	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26881171	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26881172	.	C	.	.	LowGQX	END=26881173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26881174	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26881175	.	C	.	.	LowGQX	.	GT	./.
chr1	26881176	.	A	.	.	LowGQX	END=26881180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26881181	.	C	.	.	LowGQX	.	GT	./.
chr1	26881182	.	C	.	.	LowGQX	END=26881183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26881184	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26881185	.	G	.	.	LowGQX	END=26881188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26881189	.	A	.	.	LowGQX	.	GT	./.
chr1	26881190	.	C	.	.	LowGQX	END=26881195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26881196	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26881197	.	A	.	.	LowGQX	.	GT	./.
chr1	26881198	.	G	.	.	LowGQX	END=26881200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26881201	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26881202	.	G	.	.	LowGQX	.	GT	./.
chr1	26881203	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26881204	.	A	.	.	LowGQX	.	GT	./.
chr1	26881205	.	C	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	26881206	.	T	.	.	LowGQX	END=26881207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26881208	.	G	.	.	LowGQX	.	GT	./.
chr1	26881209	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26881210	.	G	.	.	LowGQX	END=26881211	GT	./.
chr1	26881212	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26881213	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26881214	.	C	.	.	LowGQX	END=26881231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26881628	.	C	.	.	LowGQX	END=26881727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26882023	.	T	.	.	LowGQX	END=26882122	GT	./.
chr1	26883128	.	C	.	.	LowGQX	END=26883227	GT	./.
chr1	26883487	.	A	.	.	LowGQX	END=26883593	GT	./.
chr1	26885296	.	A	.	.	LowGQX	END=26885430	GT	./.
chr1	26887215	.	A	.	.	LowGQX	END=26887226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26887227	.	G	.	.	LowGQX	.	GT	./.
chr1	26887228	.	G	.	.	LowGQX	END=26887236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26887237	.	G	.	.	LowGQX	.	GT	./.
chr1	26887238	.	G	.	.	LowGQX	END=26887243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26887244	.	A	.	.	LowGQX	.	GT	./.
chr1	26887245	.	G	.	.	LowGQX	END=26887248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26887249	.	C	.	.	LowGQX	.	GT	./.
chr1	26887250	.	G	.	.	LowGQX	END=26887262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26887263	.	A	.	.	LowGQX	.	GT	./.
chr1	26887264	.	G	.	.	LowGQX	END=26887275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26887276	.	T	.	.	LowGQX	.	GT	./.
chr1	26887277	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	26887278	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	26887279	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26887280	.	G	.	.	LowGQX	.	GT	./.
chr1	26887281	.	G	.	.	LowGQX	END=26887282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26887283	.	T	.	.	LowGQX	.	GT	./.
chr1	26887284	.	C	.	.	LowGQX	END=26887294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26887295	.	T	.	.	LowGQX	.	GT	./.
chr1	26887296	.	G	.	.	LowGQX	END=26887297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26887298	.	A	.	.	LowGQX	END=26887299	GT	./.
chr1	26887300	.	G	.	.	LowGQX	END=26887305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26887306	.	T	.	.	LowGQX	.	GT	./.
chr1	26887307	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26887308	.	T	.	.	LowGQX	.	GT	./.
chr1	26887309	.	C	.	.	LowGQX	END=26887313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26887314	.	A	.	.	LowGQX	.	GT	./.
chr1	26887315	.	G	.	.	LowGQX	END=26887324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26887325	.	A	.	.	LowGQX	END=26887326	GT	./.
chr1	26887327	.	G	.	.	LowGQX	END=26887331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26887332	.	A	.	.	LowGQX	.	GT	./.
chr1	26887333	.	T	.	.	LowGQX	END=26887340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26887341	.	A	.	.	LowGQX	.	GT	./.
chr1	26887342	.	G	.	.	LowGQX	END=26887344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26887531	.	T	.	.	LowGQX	END=26887630	GT	./.
chr1	26887973	.	C	.	.	LowGQX	END=26888156	GT	./.
chr1	26897938	.	A	.	.	LowGQX	END=26898070	GT	./.
chr1	26898071	.	T	.	.	LowGQX	END=26898089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26898090	.	G	.	.	LowGQX	.	GT	./.
chr1	26898091	.	T	.	.	LowGQX	END=26898103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26898330	.	C	.	.	LowGQX	END=26898402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	26898403	.	A	.	.	LowGQX	END=26898429	GT	./.
chr1	26898665	.	A	.	.	LowGQX	END=26898786	GT	./.
chr1	26899713	.	A	.	.	LowGQX	END=26899854	GT	./.
chr1	26900568	.	A	.	.	LowGQX	END=26900694	GT	./.
chr1	26900852	.	C	.	.	LowGQX	END=26900951	GT	./.
chr1	27022882	.	G	.	.	LowGQX	END=27022899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	27022900	.	C	.	.	LowGQX	END=27022931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	27022932	.	T	.	.	LowGQX	END=27022960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	27022961	.	G	.	.	LowGQX	END=27022980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	27022981	.	G	.	.	LowGQX	END=27022994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	27022995	.	A	.	.	LowGQX	END=27022997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	27022998	.	C	.	42.03	LowGQX	DP=8;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:8:12.04:60:12
chr1	27022999	.	G	.	.	LowGQX	END=27023040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	27023041	.	A	.	.	LowGQX	END=27023045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	27023046	.	A	.	8.19	LowGQX	DP=6;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:6:0.02:60:0
chr1	27023047	.	G	.	.	LowGQX	END=27023054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	27023055	.	C	.	.	LowGQX	END=27023116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	27023117	.	G	.	.	LowGQX	END=27023127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	27023128	.	G	.	.	LowGQX	END=27023129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	27023130	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	27023131	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	27023132	.	A	.	.	PASS	END=27023133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	27023134	.	T	.	.	LowGQX	END=27023135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	27023136	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	27023137	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	27023138	.	G	.	.	PASS	END=27023139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	27023140	.	T	.	.	LowGQX	END=27023154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	27023155	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	27023156	.	G	.	.	LowGQX	END=27023161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	27023162	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	27023163	.	G	.	.	LowGQX	END=27023184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	27023185	.	G	.	.	LowGQX	END=27023189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	27023190	.	A	.	45.03	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:15.04:60:15
chr1	27023191	.	C	.	.	LowGQX	END=27023197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	27023198	.	A	.	.	LowGQX	END=27023199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	27023200	.	C	.	.	LowGQX	END=27023204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	27023205	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	27023206	.	C	.	.	LowGQX	END=27023210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	27023211	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:12:60
chr1	27023212	.	C	.	.	LowGQX	END=27023215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	27023216	.	G	.	.	PASS	END=27023217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	27023218	.	C	.	.	PASS	END=27023227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	27023228	.	G	.	.	PASS	END=27023248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	27023249	.	G	.	.	PASS	END=27023285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	27023286	.	G	.	.	PASS	END=27023298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:60
chr1	27023299	.	T	.	.	PASS	END=27023332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	27023333	.	G	.	.	PASS	END=27023357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	27023358	.	G	.	.	PASS	END=27023402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	27023403	.	A	.	.	PASS	END=27023545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	27023546	.	A	.	.	PASS	END=27023595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	27023596	.	G	.	.	PASS	END=27023729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	27023730	.	C	.	.	PASS	END=27023805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	27023806	.	G	.	.	PASS	END=27023824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	27023825	.	T	.	.	PASS	END=27023832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	27023833	.	G	.	.	PASS	END=27023844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	27023845	.	T	.	.	PASS	END=27023848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	27023849	.	G	.	.	PASS	END=27023862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	27023863	.	G	.	.	PASS	END=27023868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	27023869	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:9:60
chr1	27023870	.	G	.	.	PASS	END=27023893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	27023894	.	T	.	.	PASS	END=27023902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	27023903	.	T	.	.	PASS	END=27023907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	27023908	.	G	.	.	LowGQX	END=27023910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	27023911	.	T	.	.	LowGQX	END=27023941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	27023942	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	27023943	.	C	.	.	LowGQX	END=27023949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	27023950	.	G	.	.	LowGQX	END=27023959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	27023960	.	A	.	.	LowGQX	END=27023963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	27023964	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	27023965	.	C	.	.	LowGQX	END=27023966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	27023967	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	27023968	.	C	.	.	LowGQX	END=27023978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	27023979	.	T	.	.	LowGQX	END=27023980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	27023981	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	27023982	.	G	.	.	LowGQX	END=27024014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	27024015	.	T	.	.	LowGQX	END=27024041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27056140	.	A	.	.	PASS	END=27056176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	27056177	.	A	.	.	PASS	END=27056273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	27056274	.	T	.	.	PASS	END=27056329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	27056330	.	G	.	.	PASS	END=27056347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	27056348	.	A	.	.	PASS	END=27056356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	27057641	.	A	.	.	PASS	END=27057689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	27057690	.	C	.	.	PASS	END=27057751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	27057752	.	A	.	.	PASS	END=27057853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	27057854	.	A	.	.	PASS	END=27057880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	27057881	.	C	.	.	PASS	END=27057893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	27057894	.	C	.	.	PASS	END=27057902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	27057903	.	G	.	.	PASS	END=27057905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	27057906	.	G	.	.	PASS	END=27057907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:69:60
chr1	27057908	.	C	.	.	PASS	END=27057943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:84:60
chr1	27057944	.	A	.	.	PASS	END=27057993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	27057994	.	C	.	.	PASS	END=27058039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	27058040	.	A	.	.	PASS	END=27058093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	27058094	.	A	.	.	PASS	END=27058097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	27059165	.	A	.	.	PASS	END=27059235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	27059236	.	C	.	.	PASS	END=27059257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	27059258	.	T	.	.	PASS	END=27059277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	27059278	.	T	.	.	PASS	END=27059285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	27087345	.	A	.	.	PASS	END=27087398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	27087399	.	G	.	.	PASS	END=27087523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	27087524	.	G	.	.	PASS	END=27087563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	27087564	.	C	.	.	PASS	END=27087589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	27087870	.	A	.	.	PASS	END=27087954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	27087955	.	C	.	.	PASS	END=27087969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	27088641	.	A	.	.	PASS	END=27088657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	27088658	.	A	.	194.01	PASS	DP=188;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:141:188:99:60:99
chr1	27088659	.	C	.	.	PASS	END=27088665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	27088666	.	A	.	246.63	PASS	DP=179;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:132:179:99:60:99
chr1	27088667	.	T	.	.	PASS	END=27088674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	27088675	.	T	.	.	PASS	END=27088800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	27088801	.	G	.	.	PASS	END=27088812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	27089462	.	A	.	.	PASS	END=27089485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	27089486	.	C	.	.	PASS	END=27089516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	27089517	.	A	.	.	PASS	END=27089583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	27089584	.	T	.	.	PASS	END=27089618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:275:99:60
chr1	27089619	.	A	.	.	PASS	END=27089774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:351:99:60
chr1	27089775	.	A	.	.	PASS	END=27089778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:333:99:60
chr1	27092710	.	A	.	.	PASS	END=27092763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	27092764	.	C	.	.	PASS	END=27092839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	27092840	.	T	.	.	PASS	END=27092859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	27092946	.	A	.	.	PASS	END=27093059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	27094279	.	A	.	.	PASS	END=27094403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	27094404	.	A	.	.	PASS	END=27094462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	27094463	.	T	.	.	PASS	END=27094492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	27097608	.	A	.	.	PASS	END=27097661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	27097662	.	C	.	.	PASS	END=27097819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr1	27098989	.	A	.	.	PASS	END=27099011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	27099012	.	G	.	.	PASS	END=27099125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	27099301	.	A	.	.	PASS	END=27099331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	27099332	.	C	.	.	PASS	END=27099465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	27099466	.	A	.	.	PASS	END=27099480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	27099835	.	A	.	.	PASS	END=27099865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	27099866	.	G	.	.	PASS	END=27099966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	27099967	.	A	.	.	PASS	END=27099989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	27100069	.	A	.	.	PASS	END=27100121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	27100122	.	G	.	.	PASS	END=27100210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	27100291	.	A	.	.	PASS	END=27100372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	27100373	.	A	.	.	PASS	END=27100391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	27100818	.	A	.	.	PASS	END=27100879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	27100880	.	A	.	.	PASS	END=27100936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	27100937	.	C	.	.	PASS	END=27101016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:79:60
chr1	27101017	.	T	.	.	PASS	END=27101183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:268:99:60
chr1	27101184	.	C	.	.	PASS	END=27101322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:313:99:60
chr1	27101323	.	A	.	.	PASS	END=27101365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr1	27101366	.	A	.	.	PASS	END=27101374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	27101375	.	C	.	.	PASS	END=27101385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	27101386	.	T	.	.	PASS	END=27101412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	27101413	.	A	.	.	PASS	END=27101441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	27101442	.	C	.	.	PASS	END=27101467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	27101468	.	C	.	.	PASS	END=27101515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	27101516	.	T	.	.	PASS	END=27101575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	27101576	.	G	.	.	PASS	END=27101700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	27101701	.	G	.	.	PASS	END=27101713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	27102066	.	A	.	.	PASS	END=27102124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	27102125	.	G	.	.	PASS	END=27102162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	27102163	.	G	.	.	PASS	END=27102200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	27102299	.	C	.	.	PASS	END=27102315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	27102316	.	C	.	.	PASS	END=27102321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr1	27102322	.	A	.	.	PASS	END=27102334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	27102335	.	C	.	.	PASS	END=27102343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	27102344	.	T	.	.	PASS	END=27102347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	27102348	.	C	.	.	LowGQX	END=27102355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	27102356	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	27102357	.	A	.	.	LowGQX	END=27102381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	27102382	.	G	.	.	LowGQX	END=27102389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	27102390	.	G	.	.	LowGQX	END=27102398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	27105512	.	A	.	.	PASS	END=27105587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	27105588	.	G	.	.	PASS	END=27105608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	27105609	.	A	.	.	PASS	END=27105634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	27105635	.	G	.	.	PASS	END=27105638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	27105639	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:42:60
chr1	27105640	.	A	.	.	PASS	END=27105660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	27105661	.	C	.	.	PASS	END=27105688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	27105689	.	A	.	.	PASS	END=27105690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	27105691	.	C	.	.	PASS	END=27105727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	27105728	.	A	.	.	PASS	END=27105742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	27105743	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:45:60
chr1	27105744	.	T	.	.	PASS	END=27105871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	27105872	.	C	.	.	PASS	END=27105917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	27105918	.	C	.	.	PASS	END=27105942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	27105943	.	A	.	.	PASS	END=27105989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	27105990	.	T	.	.	PASS	END=27106003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	27106004	.	C	.	.	PASS	END=27106042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	27106043	.	C	.	.	PASS	END=27106065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	27106066	.	G	.	.	PASS	END=27106122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	27106123	.	G	.	.	PASS	END=27106148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr1	27106149	.	C	.	.	PASS	END=27106289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:262:99:60
chr1	27106290	.	G	.	.	PASS	END=27106447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:284:99:60
chr1	27106448	.	A	.	.	PASS	END=27106579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr1	27106580	.	T	.	.	PASS	END=27106623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	27106624	.	A	.	.	PASS	END=27106659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	27106660	.	T	.	.	PASS	END=27106748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	27106749	.	A	.	.	PASS	END=27106801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	27106802	.	C	.	.	PASS	END=27106859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	27106860	.	C	.	.	PASS	END=27107022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:92:60
chr1	27107023	.	C	.	.	PASS	END=27107047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	27107048	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:63:60
chr1	27107049	.	C	.	.	PASS	END=27107091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:80:60
chr1	27107092	.	G	.	.	PASS	END=27107119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	27107120	.	T	.	.	PASS	END=27107147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	27107148	.	G	.	.	PASS	END=27107244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	27107245	.	T	.	.	PASS	END=27107249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	27117256	.	G	.	.	PASS	END=27117298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	27117299	.	G	.	.	PASS	END=27117391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	27117392	.	T	.	.	PASS	END=27117412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	27117413	.	T	.	.	PASS	END=27117435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	27120553	.	T	.	.	PASS	END=27120585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	27120586	.	T	.	.	PASS	END=27120588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	27120589	.	T	.	.	PASS	END=27120597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	27120598	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:27:60
chr1	27120599	.	C	.	.	PASS	END=27120603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	27120604	.	G	.	.	PASS	END=27120613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	27120614	.	A	.	.	PASS	END=27120616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	27120617	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:66:60
chr1	27120618	.	C	.	.	PASS	END=27120636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	27120637	.	G	.	.	PASS	END=27120658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	27120659	.	G	.	.	PASS	END=27120686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	27120687	.	A	.	.	PASS	END=27120711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	27120712	.	C	.	.	PASS	END=27120735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	27120736	.	T	.	.	PASS	END=27120814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	27120815	.	T	.	.	PASS	END=27120847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:249:99:60
chr1	27120848	.	T	.	.	PASS	END=27120955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:322:99:60
chr1	27120956	.	G	.	.	PASS	END=27121107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:357:99:60
chr1	27121108	.	C	.	.	PASS	END=27121240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:300:99:60
chr1	27121241	.	C	.	.	PASS	END=27121284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	27121285	.	C	.	.	PASS	END=27121301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	27121302	.	C	.	.	PASS	END=27121406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	27121407	.	T	.	.	PASS	END=27121534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	27121535	.	T	.	.	PASS	END=27121573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	27121574	.	C	.	.	PASS	END=27121591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	27121592	.	T	.	.	PASS	END=27121629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	27121630	.	A	.	.	PASS	END=27121662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	27121663	.	T	.	.	PASS	END=27121683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	27121684	.	G	.	.	PASS	END=27121687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr1	27121688	.	T	.	.	PASS	END=27121690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	27121691	.	T	.	.	PASS	END=27121693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	27121694	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:48:60
chr1	27121695	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:63:60
chr1	27121696	.	C	.	.	PASS	END=27121699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	27121700	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:42:60
chr1	27121701	.	T	.	.	PASS	END=27121706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	27121707	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:33:60
chr1	27121708	.	C	.	.	PASS	END=27121718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	27121719	.	T	.	.	PASS	END=27121721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	27121722	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:36:60
chr1	27121723	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:3:60
chr1	27121724	.	A	.	.	PASS	END=27121725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	27121726	.	G	.	.	PASS	END=27121736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	27121737	.	T	.	.	PASS	END=27121740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	27121741	.	G	.	.	PASS	END=27121754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	27121755	.	T	.	.	LowGQX	END=27121763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	27121764	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:60
chr1	27121765	.	G	.	.	LowGQX	END=27121770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	27121771	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	27121772	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	27121773	.	C	.	.	LowGQX	END=27121774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	27121775	.	C	.	.	LowGQX	END=27121776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	27124003	.	G	.	.	PASS	END=27124014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	27124015	.	C	.	.	PASS	END=27124058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	27124059	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:27:60
chr1	27124060	.	A	.	.	PASS	END=27124061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	27124062	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:21:60
chr1	27124063	.	A	.	.	PASS	END=27124077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	27124078	.	T	.	.	PASS	END=27124080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	27124081	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:54:60
chr1	27124082	.	C	.	.	PASS	END=27124092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	27124093	.	T	.	.	PASS	END=27124121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	27124122	.	T	.	.	PASS	END=27124128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	27124129	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:69:60
chr1	27124130	.	C	.	.	PASS	END=27124146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	27124147	.	A	.	.	PASS	END=27124171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	27124172	.	C	.	.	PASS	END=27124205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	27124206	.	A	.	.	PASS	END=27124261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	27124262	.	A	.	.	PASS	END=27124291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	27124292	.	T	.	.	PASS	END=27124311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	27124312	.	T	.	.	PASS	END=27124331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	27124332	.	A	.	.	PASS	END=27124342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	27124343	.	T	.	.	PASS	END=27124353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	27124354	.	A	.	.	PASS	END=27124364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	27124365	.	C	.	.	PASS	END=27124382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	27124383	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	27124384	.	G	.	.	PASS	END=27124385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	27124386	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	27153283	.	C	.	.	LowGQX	END=27153632	GT	./.
chr1	27158936	.	A	.	.	LowGQX	END=27158948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27158949	.	T	.	.	LowGQX	END=27159018	GT	./.
chr1	27159019	.	G	.	.	LowGQX	END=27159099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27159100	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	27175097	.	A	.	.	LowGQX	END=27175117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	27175118	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	27175119	.	T	.	.	LowGQX	END=27175203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27175204	.	G	.	.	LowGQX	END=27175205	GT	./.
chr1	27175206	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27175207	.	C	.	.	LowGQX	END=27175208	GT	./.
chr1	27175209	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27175210	.	C	.	.	LowGQX	END=27175211	GT	./.
chr1	27175212	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27175213	.	G	.	.	LowGQX	.	GT	./.
chr1	27175214	.	A	.	.	LowGQX	END=27175220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27175221	.	C	.	.	LowGQX	END=27175223	GT	./.
chr1	27175224	.	T	.	.	LowGQX	END=27175227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27175228	.	G	.	.	LowGQX	.	GT	./.
chr1	27175229	.	T	.	.	LowGQX	END=27175231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27175232	.	C	.	.	LowGQX	.	GT	./.
chr1	27175233	.	T	.	.	LowGQX	END=27175234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27175235	.	C	.	.	LowGQX	END=27175250	GT	./.
chr1	27176790	.	A	.	.	LowGQX	END=27176931	GT	./.
chr1	27177024	.	T	.	.	LowGQX	END=27177123	GT	./.
chr1	27177618	.	A	.	.	LowGQX	END=27177724	GT	./.
chr1	27179242	.	A	.	.	LowGQX	END=27179274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27179275	.	G	.	.	LowGQX	END=27179344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	27179345	.	C	A	9.30	LowGQX	BaseQRankSum=-1.026;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-1.026;QD=2.32;ReadPosRankSum=0.000;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:38.75:39,0,39:60:9:0.500
chr1	27179346	.	C	.	.	LowGQX	END=27179358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	27180215	.	A	.	.	LowGQX	END=27180336	GT	./.
chr1	27182646	.	A	.	.	LowGQX	END=27182745	GT	./.
chr1	27189702	.	C	.	.	LowGQX	END=27189765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27189766	.	C	.	.	LowGQX	END=27190302	GT	./.
chr1	27190303	.	G	.	.	LowGQX	END=27190447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27190448	.	T	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	27190449	.	G	.	.	LowGQX	END=27190452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	27206155	.	G	.	.	LowGQX	END=27206175	GT	./.
chr1	27206176	.	G	.	.	LowGQX	END=27206254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27210649	.	A	.	.	LowGQX	END=27210783	GT	./.
chr1	27212462	.	A	.	.	LowGQX	END=27212477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	27212478	.	G	T	3.07	LowGQ;LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.02;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:25.53:30,0,26:60:3:0.333
chr1	27212479	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	27212480	.	A	.	.	LowGQX	END=27212488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27212489	.	A	.	.	LowGQX	.	GT	./.
chr1	27212490	.	C	.	.	LowGQX	END=27212491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27212492	.	A	.	.	LowGQX	.	GT	./.
chr1	27212493	.	G	.	.	LowGQX	END=27212499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27212500	.	G	.	.	LowGQX	.	GT	./.
chr1	27212501	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27212502	.	C	.	.	LowGQX	.	GT	./.
chr1	27212503	.	T	.	.	LowGQX	END=27212523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27212524	.	C	.	.	LowGQX	.	GT	./.
chr1	27212525	.	T	.	.	LowGQX	END=27212550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27212551	.	G	.	.	LowGQX	.	GT	./.
chr1	27212552	.	A	.	.	LowGQX	END=27212558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27212559	.	C	.	.	LowGQX	.	GT	./.
chr1	27212560	.	A	.	.	LowGQX	END=27212580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27212581	.	G	.	.	LowGQX	.	GT	./.
chr1	27212582	.	T	.	.	LowGQX	END=27212584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27212585	.	G	.	.	LowGQX	.	GT	./.
chr1	27212586	.	A	.	.	LowGQX	END=27212592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27212593	.	C	.	.	LowGQX	.	GT	./.
chr1	27212594	.	A	.	.	LowGQX	END=27212611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27212612	.	T	.	.	LowGQX	END=27212626	GT	./.
chr1	27212873	.	A	.	.	LowGQX	END=27213032	GT	./.
chr1	27215458	.	A	.	.	LowGQX	END=27215618	GT	./.
chr1	27216175	.	A	.	.	LowGQX	END=27216180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27216181	.	A	.	.	LowGQX	END=27216589	GT	./.
chr1	27217269	.	A	.	.	LowGQX	END=27217368	GT	./.
chr1	27217499	.	G	.	.	LowGQX	END=27217719	GT	./.
chr1	27218900	.	A	.	.	LowGQX	END=27219031	GT	./.
chr1	27219159	.	A	.	.	LowGQX	END=27219244	GT	./.
chr1	27219245	.	C	.	.	LowGQX	END=27219275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27219276	.	C	.	.	LowGQX	.	GT	./.
chr1	27219277	.	C	.	.	LowGQX	END=27219284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27219860	.	T	.	.	LowGQX	END=27219959	GT	./.
chr1	27220725	.	A	.	.	LowGQX	END=27220903	GT	./.
chr1	27223790	.	A	.	.	LowGQX	END=27224218	GT	./.
chr1	27226481	.	A	.	.	LowGQX	END=27226935	GT	./.
chr1	27237571	.	C	.	.	LowGQX	END=27237730	GT	./.
chr1	27238285	.	A	.	.	PASS	END=27238307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	27238308	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:41:60
chr1	27238309	.	C	.	.	PASS	END=27238334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	27238335	.	G	.	.	PASS	END=27238442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:79:60
chr1	27238443	.	T	.	.	PASS	END=27238482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	27238483	.	T	.	.	PASS	END=27238498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	27238499	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:69:60
chr1	27238500	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:39:60
chr1	27238501	.	C	.	.	PASS	END=27238516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	27238517	.	A	.	.	PASS	END=27238528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	27238529	.	T	.	.	PASS	END=27238532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	27238533	.	G	.	.	PASS	END=27238534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	27238535	.	T	.	.	PASS	END=27238540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	27238541	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:48:60
chr1	27238542	.	G	.	.	PASS	END=27238559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	27238560	.	C	.	.	PASS	END=27238562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	27238563	.	G	.	.	PASS	END=27238575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	27238576	.	A	.	.	PASS	END=27238580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	27238581	.	T	.	.	PASS	END=27238584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	27238585	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:18:60
chr1	27238586	.	A	.	.	PASS	END=27238594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	27238595	.	G	.	.	PASS	END=27238596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	27238597	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:13:60
chr1	27238598	.	G	.	.	PASS	END=27238600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	27238601	.	G	.	.	PASS	END=27238603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	27238604	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:21:60
chr1	27238605	.	G	.	.	PASS	END=27238606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	27238607	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr1	27238608	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	27238609	.	A	.	.	PASS	END=27238621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	27238622	.	C	.	.	LowGQX	END=27238623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	27238624	.	G	.	.	LowGQX	END=27238628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	27239849	.	C	.	.	PASS	END=27239868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	27239869	.	G	.	.	PASS	END=27239875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	27239876	.	A	.	.	PASS	END=27239934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	27239935	.	T	.	.	PASS	END=27239980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	27239981	.	A	.	.	PASS	END=27240140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	27240141	.	C	.	.	PASS	END=27240232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	27240233	.	C	.	.	PASS	END=27240303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	27240304	.	T	.	.	PASS	END=27240328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	27240329	.	G	.	.	PASS	END=27240348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	27240349	.	C	.	.	PASS	END=27240384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	27240385	.	C	.	.	PASS	END=27240391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	27240392	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:54:60
chr1	27240393	.	T	.	.	PASS	END=27240406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	27240407	.	A	.	.	PASS	END=27240413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	27240414	.	T	.	.	PASS	END=27240417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	27240418	.	T	.	.	PASS	END=27240420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	27240421	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:15:60
chr1	27240422	.	T	.	.	PASS	END=27240440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	27240441	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:42:60
chr1	27240442	.	C	.	.	PASS	END=27240454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	27240455	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:12:60
chr1	27240456	.	A	.	.	PASS	END=27240473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	27240474	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:36:60
chr1	27240475	.	C	.	.	PASS	END=27240477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	27240478	.	C	.	.	PASS	END=27240482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	27248289	.	G	.	.	PASS	END=27248300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	27248301	.	A	.	.	PASS	END=27248427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:96:60
chr1	27248428	.	C	.	.	PASS	END=27248444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	27248445	.	C	.	.	PASS	END=27248446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:65:60
chr1	27248447	.	C	.	.	PASS	END=27248455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	27248456	.	C	.	.	PASS	END=27248460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	27248461	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:81:60
chr1	27248462	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:39:60
chr1	27248463	.	A	.	.	PASS	END=27248471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	27250529	.	A	.	.	PASS	END=27250555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	27250556	.	T	.	.	PASS	END=27250645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	27250646	.	A	.	.	PASS	END=27250670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	27250671	.	A	.	.	PASS	END=27250674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	27250675	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:42:60
chr1	27250676	.	T	.	.	PASS	END=27250688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	27250689	.	G	.	.	PASS	END=27250702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	27250703	.	G	.	.	PASS	END=27250708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	27256152	.	T	.	.	LowGQX	END=27256251	GT	./.
chr1	27267897	.	T	.	.	PASS	END=27267900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	27267901	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:57:60
chr1	27267902	.	C	.	.	PASS	END=27267907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	27267908	.	C	.	.	PASS	END=27267941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	27267942	.	C	.	.	PASS	END=27267974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	27267975	.	A	.	.	PASS	END=27268019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	27268020	.	G	.	.	PASS	END=27268129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	27268130	.	G	.	.	PASS	END=27268301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	27268302	.	G	.	.	PASS	END=27268328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	27268329	.	C	.	.	PASS	END=27268337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	27268338	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:71:60
chr1	27268339	.	G	.	.	PASS	END=27268340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	27268341	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:48:60
chr1	27268342	.	A	.	.	PASS	END=27268349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	27268350	.	G	.	.	PASS	END=27268360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	27269100	.	T	.	.	PASS	END=27269123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	27269124	.	T	.	.	PASS	END=27269149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	27269150	.	G	.	.	PASS	END=27269233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	27269234	.	T	.	.	PASS	END=27269252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	27269253	.	C	.	.	PASS	END=27269275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	27269276	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:66:60
chr1	27269277	.	A	.	.	PASS	END=27269299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	27269300	.	G	.	.	PASS	END=27269302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	27269303	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:69:60
chr1	27269304	.	C	.	.	PASS	END=27269353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	27269354	.	C	.	.	PASS	END=27269398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	27269399	.	G	.	.	PASS	END=27269424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	27269425	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:69:60
chr1	27269426	.	G	.	.	PASS	END=27269467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:85:60
chr1	27269468	.	T	.	.	PASS	END=27269540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:96:60
chr1	27269541	.	T	.	.	PASS	END=27269565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	27269566	.	G	.	.	PASS	END=27269582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	27269583	.	T	.	.	PASS	END=27269607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	27271830	.	C	.	.	PASS	END=27271836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	27271837	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:19:60
chr1	27271838	.	A	.	.	PASS	END=27271841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	27271842	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:57:60
chr1	27271843	.	G	.	.	PASS	END=27271850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr1	27271851	.	C	.	.	PASS	END=27271861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	27271862	.	C	.	.	PASS	END=27271909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	27271910	.	G	.	.	PASS	END=27272038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:87:60
chr1	27272039	.	C	.	.	PASS	END=27272132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	27272133	.	G	.	.	PASS	END=27272148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	27272149	.	G	.	.	PASS	END=27272152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	27272153	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:90:60
chr1	27272154	.	G	.	.	PASS	END=27272161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	27272162	.	A	.	.	PASS	END=27272176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	27272177	.	A	.	.	PASS	END=27272179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:54:60
chr1	27272180	.	G	.	.	PASS	END=27272188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	27272189	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:60:60
chr1	27272190	.	G	.	.	PASS	END=27272192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	27272193	.	A	.	.	PASS	END=27272194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr1	27272195	.	G	.	.	PASS	END=27272198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	27272199	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:51:60
chr1	27272200	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:39:60
chr1	27272201	.	G	.	.	PASS	END=27272204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	27272205	.	G	.	.	PASS	END=27272206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:42:60
chr1	27272207	.	C	.	.	PASS	END=27272209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	27272210	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:36:60
chr1	27272211	.	G	.	.	PASS	END=27272213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	27272214	.	T	.	.	PASS	END=27272215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:45:60
chr1	27272216	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:60:60
chr1	27272217	.	C	.	.	PASS	END=27272218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:33:60
chr1	27272219	.	G	.	.	PASS	END=27272228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	27272570	.	C	.	.	PASS	END=27272597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	27272598	.	T	.	.	PASS	END=27272704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:58
chr1	27272705	.	T	.	.	PASS	END=27272723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:57
chr1	27276552	.	G	.	.	LowGQX	END=27276651	GT	./.
chr1	27277161	.	T	.	.	LowGQX	END=27277260	GT	./.
chr1	27277831	.	A	.	.	LowGQX	END=27278873	GT	./.
chr1	27320265	.	T	.	.	LowGQX	END=27320964	GT	./.
chr1	27332433	.	A	.	.	LowGQX	END=27332456	GT	./.
chr1	27332457	.	G	.	.	LowGQX	END=27332478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27332479	.	G	.	.	LowGQX	.	GT	./.
chr1	27332480	.	T	.	.	LowGQX	END=27332594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27332595	.	G	T	9.30	LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr1	27332596	.	C	.	.	LowGQX	END=27332637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27332638	.	T	.	.	LowGQX	.	GT	./.
chr1	27332639	.	C	.	.	LowGQX	END=27332680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27332681	.	C	.	.	LowGQX	END=27333016	GT	./.
chr1	27333017	.	G	.	.	LowGQX	END=27333072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27333073	.	A	.	.	LowGQX	.	GT	./.
chr1	27333074	.	T	.	.	LowGQX	END=27333113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27333114	.	A	.	.	LowGQX	.	GT	./.
chr1	27333115	.	C	.	.	LowGQX	END=27333211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27333212	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	27333213	.	A	.	.	LowGQX	END=27333297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27333298	.	A	.	.	LowGQX	END=27333450	GT	./.
chr1	27338826	.	A	.	.	LowGQX	END=27338928	GT	./.
chr1	27338929	.	G	.	.	LowGQX	END=27338932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27338933	.	G	.	.	LowGQX	END=27338934	GT	./.
chr1	27338935	.	A	.	.	LowGQX	END=27338937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27338938	.	T	.	.	LowGQX	.	GT	./.
chr1	27338939	.	T	.	.	LowGQX	END=27338942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27338943	.	G	.	.	LowGQX	.	GT	./.
chr1	27338944	.	C	.	.	LowGQX	END=27338948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27338949	.	G	.	.	LowGQX	.	GT	./.
chr1	27338950	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27338951	.	G	.	.	LowGQX	.	GT	./.
chr1	27338952	.	A	.	.	LowGQX	END=27338956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27338957	.	G	.	.	LowGQX	.	GT	./.
chr1	27338958	.	A	.	.	LowGQX	END=27338980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27338981	.	C	.	.	LowGQX	END=27339165	GT	./.
chr1	27426796	.	T	.	.	LowGQX	END=27426800	GT	./.
chr1	27426801	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426802	.	T	.	.	LowGQX	END=27426803	GT	./.
chr1	27426804	.	C	.	.	LowGQX	END=27426805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426806	.	C	.	.	LowGQX	END=27426807	GT	./.
chr1	27426808	.	T	.	.	LowGQX	END=27426810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426811	.	G	.	.	LowGQX	.	GT	./.
chr1	27426812	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426813	.	G	.	.	LowGQX	.	GT	./.
chr1	27426814	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426815	.	A	.	.	LowGQX	END=27426818	GT	./.
chr1	27426819	.	C	.	.	LowGQX	END=27426820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426821	.	G	.	.	LowGQX	END=27426823	GT	./.
chr1	27426824	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426825	.	T	.	.	LowGQX	.	GT	./.
chr1	27426826	.	C	.	.	LowGQX	END=27426828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426829	.	T	.	.	LowGQX	.	GT	./.
chr1	27426830	.	C	.	.	LowGQX	END=27426832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426833	.	C	.	.	LowGQX	END=27426835	GT	./.
chr1	27426836	.	G	.	.	LowGQX	END=27426839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426840	.	A	.	.	LowGQX	.	GT	./.
chr1	27426841	.	G	.	.	LowGQX	END=27426843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426844	.	T	.	.	LowGQX	END=27426846	GT	./.
chr1	27426847	.	G	.	.	LowGQX	END=27426848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426849	.	G	.	.	LowGQX	.	GT	./.
chr1	27426850	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426851	.	C	.	.	LowGQX	END=27426853	GT	./.
chr1	27426854	.	G	.	.	LowGQX	END=27426855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426856	.	T	.	.	LowGQX	.	GT	./.
chr1	27426857	.	C	.	.	LowGQX	END=27426860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426861	.	G	.	.	LowGQX	END=27426862	GT	./.
chr1	27426863	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426864	.	G	.	.	LowGQX	.	GT	./.
chr1	27426865	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426866	.	A	.	.	LowGQX	.	GT	./.
chr1	27426867	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426868	.	C	.	.	LowGQX	.	GT	./.
chr1	27426869	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426870	.	C	.	.	LowGQX	END=27426873	GT	./.
chr1	27426874	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426875	.	T	.	.	LowGQX	.	GT	./.
chr1	27426876	.	C	.	.	LowGQX	END=27426877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426878	.	T	.	.	LowGQX	.	GT	./.
chr1	27426879	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426880	.	T	.	.	LowGQX	.	GT	./.
chr1	27426881	.	G	.	.	LowGQX	END=27426882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426883	.	G	.	.	LowGQX	.	GT	./.
chr1	27426884	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426885	.	G	.	.	LowGQX	END=27426889	GT	./.
chr1	27426890	.	G	.	.	LowGQX	END=27426891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426892	.	C	.	.	LowGQX	.	GT	./.
chr1	27426893	.	T	.	.	LowGQX	END=27426894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426895	.	T	.	.	LowGQX	.	GT	./.
chr1	27426896	.	C	.	.	LowGQX	END=27426897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426898	.	C	.	.	LowGQX	.	GT	./.
chr1	27426899	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426900	.	G	.	.	LowGQX	.	GT	./.
chr1	27426901	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426902	.	G	.	.	LowGQX	END=27426904	GT	./.
chr1	27426905	.	C	.	.	LowGQX	END=27426906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426907	.	G	.	.	LowGQX	.	GT	./.
chr1	27426908	.	G	.	.	LowGQX	END=27426910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426911	.	T	.	.	LowGQX	.	GT	./.
chr1	27426912	.	G	.	.	LowGQX	END=27426920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426921	.	G	.	.	LowGQX	END=27426923	GT	./.
chr1	27426924	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426925	.	G	.	.	LowGQX	.	GT	./.
chr1	27426926	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426927	.	T	.	.	LowGQX	.	GT	./.
chr1	27426928	.	C	.	.	LowGQX	END=27426929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426930	.	T	.	.	LowGQX	END=27426933	GT	./.
chr1	27426934	.	G	.	.	LowGQX	END=27426939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426940	.	G	.	.	LowGQX	.	GT	./.
chr1	27426941	.	T	.	.	LowGQX	END=27426949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426950	.	T	.	.	LowGQX	.	GT	./.
chr1	27426951	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27426952	.	C	.	.	LowGQX	END=27427137	GT	./.
chr1	27427681	.	G	.	.	LowGQX	END=27427713	GT	./.
chr1	27427714	.	G	.	.	LowGQX	END=27427780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27428214	.	A	.	.	LowGQX	END=27428319	GT	./.
chr1	27428505	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	27428506	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27428507	.	C	.	.	LowGQX	.	GT	./.
chr1	27428508	.	C	.	.	LowGQX	END=27428510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27428511	.	T	.	.	LowGQX	.	GT	./.
chr1	27428512	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27428513	.	C	.	.	LowGQX	.	GT	./.
chr1	27428514	.	C	.	.	LowGQX	END=27428516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27428517	.	G	.	.	LowGQX	.	GT	./.
chr1	27428518	.	T	.	.	LowGQX	END=27428523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27428524	.	G	.	.	LowGQX	.	GT	./.
chr1	27428525	.	C	.	.	LowGQX	END=27428530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27428531	.	G	.	.	LowGQX	END=27428532	GT	./.
chr1	27428533	.	T	.	.	LowGQX	END=27428535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27428536	.	T	.	.	LowGQX	END=27428537	GT	./.
chr1	27428538	.	A	.	.	LowGQX	END=27428540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27428541	.	A	.	.	LowGQX	.	GT	./.
chr1	27428542	.	T	.	.	LowGQX	END=27428546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27428547	.	C	.	.	LowGQX	END=27428548	GT	./.
chr1	27428549	.	G	.	.	LowGQX	END=27428557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27428558	.	C	.	.	LowGQX	.	GT	./.
chr1	27428559	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27428560	.	C	.	.	LowGQX	.	GT	./.
chr1	27428561	.	C	.	.	LowGQX	END=27428565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27428566	.	C	.	.	LowGQX	END=27428568	GT	./.
chr1	27428569	.	T	.	.	LowGQX	END=27428577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27428578	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	27428579	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	27428580	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	27428581	.	G	.	.	LowGQX	END=27428585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27428586	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	27428587	.	T	.	.	LowGQX	END=27428588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27428589	.	C	.	31.25	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:2.04:60:2
chr1	27428590	.	G	.	.	LowGQX	END=27428596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27428597	.	A	.	.	LowGQX	.	GT	./.
chr1	27428598	.	G	.	.	LowGQX	END=27428603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27428604	.	G	.	.	LowGQX	END=27428605	GT	./.
chr1	27428606	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27428607	.	T	.	.	LowGQX	.	GT	./.
chr1	27428608	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27428609	.	G	.	.	LowGQX	.	GT	./.
chr1	27428610	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27428611	.	G	.	.	LowGQX	.	GT	./.
chr1	27428612	.	G	.	.	LowGQX	END=27428613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27428614	.	G	.	.	LowGQX	.	GT	./.
chr1	27428615	.	G	.	.	LowGQX	END=27428616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27428617	.	T	.	.	LowGQX	.	GT	./.
chr1	27428618	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27428619	.	T	.	.	LowGQX	.	GT	./.
chr1	27428620	.	T	.	.	LowGQX	END=27428621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27428622	.	C	.	.	LowGQX	.	GT	./.
chr1	27428623	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27428874	.	A	.	.	LowGQX	END=27429051	GT	./.
chr1	27429150	.	G	.	.	LowGQX	END=27429166	GT	./.
chr1	27429167	.	T	.	.	LowGQX	END=27429172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429173	.	C	.	.	LowGQX	.	GT	./.
chr1	27429174	.	A	.	.	LowGQX	END=27429181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429182	.	T	.	.	LowGQX	.	GT	./.
chr1	27429183	.	G	.	.	LowGQX	END=27429188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429189	.	A	.	.	LowGQX	.	GT	./.
chr1	27429190	.	G	.	.	LowGQX	END=27429197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429198	.	A	.	.	LowGQX	.	GT	./.
chr1	27429199	.	G	.	.	LowGQX	END=27429209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429210	.	T	.	.	LowGQX	END=27429212	GT	./.
chr1	27429213	.	C	.	.	LowGQX	END=27429214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429215	.	G	.	.	LowGQX	.	GT	./.
chr1	27429216	.	T	.	.	LowGQX	END=27429226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429227	.	T	.	.	LowGQX	.	GT	./.
chr1	27429228	.	C	.	.	LowGQX	END=27429232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429233	.	A	.	.	LowGQX	.	GT	./.
chr1	27429234	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429235	.	C	.	.	LowGQX	.	GT	./.
chr1	27429236	.	T	.	.	LowGQX	END=27429242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429243	.	G	.	.	LowGQX	.	GT	./.
chr1	27429244	.	G	.	.	LowGQX	END=27429247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429248	.	A	.	.	LowGQX	.	GT	./.
chr1	27429249	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429709	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429710	.	G	.	.	LowGQX	.	GT	./.
chr1	27429711	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429712	.	A	.	.	LowGQX	END=27429713	GT	./.
chr1	27429714	.	C	.	.	LowGQX	END=27429720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429721	.	T	.	.	LowGQX	.	GT	./.
chr1	27429722	.	G	.	.	LowGQX	END=27429732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429733	.	T	.	.	LowGQX	.	GT	./.
chr1	27429734	.	T	.	.	LowGQX	END=27429759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429760	.	T	.	.	LowGQX	.	GT	./.
chr1	27429761	.	T	.	.	LowGQX	END=27429766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429767	.	C	.	.	LowGQX	.	GT	./.
chr1	27429768	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429769	.	G	.	.	LowGQX	.	GT	./.
chr1	27429770	.	C	.	.	LowGQX	END=27429783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27429784	.	A	.	.	LowGQX	.	GT	./.
chr1	27429785	.	G	.	.	LowGQX	END=27429808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27432192	.	C	.	.	LowGQX	END=27432467	GT	./.
chr1	27432468	.	G	.	.	LowGQX	END=27432580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27434137	.	A	.	.	LowGQX	END=27434358	GT	./.
chr1	27436016	.	A	.	.	LowGQX	END=27436070	GT	./.
chr1	27436071	.	G	.	.	LowGQX	END=27436098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27436099	.	A	.	.	LowGQX	.	GT	./.
chr1	27436100	.	C	.	.	LowGQX	END=27436157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27436158	.	C	A	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	27436159	.	A	.	.	LowGQX	END=27436188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27436189	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	27436190	.	A	.	.	LowGQX	END=27436262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27436263	.	C	.	.	LowGQX	END=27436270	GT	./.
chr1	27440315	.	A	.	.	LowGQX	END=27440779	GT	./.
chr1	27480472	.	A	.	.	LowGQX	END=27480640	GT	./.
chr1	27480641	.	G	.	.	LowGQX	END=27480739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27480740	.	A	.	.	LowGQX	.	GT	./.
chr1	27480741	.	G	.	.	LowGQX	END=27480804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27480805	.	G	.	.	LowGQX	.	GT	./.
chr1	27480806	.	A	.	.	LowGQX	END=27480814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27480815	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	27480816	.	G	.	.	LowGQX	END=27480827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	27587520	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587521	.	C	.	.	LowGQX	END=27587522	GT	./.
chr1	27587523	.	T	.	.	LowGQX	END=27587524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587525	.	C	.	.	LowGQX	END=27587526	GT	./.
chr1	27587527	.	G	.	.	LowGQX	END=27587531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587532	.	A	.	.	LowGQX	.	GT	./.
chr1	27587533	.	C	.	.	LowGQX	END=27587535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587536	.	T	.	.	LowGQX	.	GT	./.
chr1	27587537	.	T	.	.	LowGQX	END=27587538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587539	.	A	.	.	LowGQX	.	GT	./.
chr1	27587540	.	G	.	.	LowGQX	END=27587541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587542	.	A	.	.	LowGQX	.	GT	./.
chr1	27587543	.	A	.	.	LowGQX	END=27587545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587546	.	A	.	.	LowGQX	END=27587547	GT	./.
chr1	27587548	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587549	.	G	.	.	LowGQX	END=27587550	GT	./.
chr1	27587551	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587552	.	A	.	.	LowGQX	.	GT	./.
chr1	27587553	.	A	.	.	LowGQX	END=27587558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587559	.	A	.	.	LowGQX	END=27587561	GT	./.
chr1	27587562	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587563	.	A	.	.	LowGQX	.	GT	./.
chr1	27587564	.	A	.	.	LowGQX	END=27587566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587567	.	A	.	.	LowGQX	END=27587568	GT	./.
chr1	27587569	.	A	.	.	LowGQX	END=27587570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587571	.	A	.	.	LowGQX	.	GT	./.
chr1	27587572	.	C	.	.	LowGQX	END=27587573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587574	.	T	.	.	LowGQX	.	GT	./.
chr1	27587575	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587576	.	A	.	.	LowGQX	END=27587577	GT	./.
chr1	27587578	.	C	.	.	LowGQX	END=27587579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587580	.	G	.	.	LowGQX	END=27587584	GT	./.
chr1	27587585	.	C	.	.	LowGQX	END=27587586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587587	.	G	.	.	LowGQX	END=27587589	GT	./.
chr1	27587590	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587591	.	A	.	.	LowGQX	.	GT	./.
chr1	27587592	.	A	.	.	LowGQX	END=27587596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587597	.	A	.	.	LowGQX	.	GT	./.
chr1	27587598	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587599	.	C	.	.	LowGQX	END=27587600	GT	./.
chr1	27587601	.	G	.	.	LowGQX	END=27587602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587603	.	C	.	.	LowGQX	END=27587605	GT	./.
chr1	27587606	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587607	.	A	.	.	LowGQX	.	GT	./.
chr1	27587608	.	C	.	.	LowGQX	END=27587609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27587610	.	T	.	.	LowGQX	END=27587619	GT	./.
chr1	27589575	.	A	.	.	LowGQX	END=27589734	GT	./.
chr1	27608704	.	T	.	.	LowGQX	END=27608717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27608718	.	T	.	.	LowGQX	.	GT	./.
chr1	27608719	.	T	.	.	LowGQX	END=27608738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27608739	.	G	.	.	LowGQX	.	GT	./.
chr1	27608740	.	G	.	.	LowGQX	END=27608769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27608770	.	A	.	.	LowGQX	END=27608803	GT	./.
chr1	27609827	.	A	.	.	LowGQX	END=27609942	GT	./.
chr1	27614163	.	A	.	.	LowGQX	END=27614320	GT	./.
chr1	27614321	.	T	.	.	LowGQX	END=27614354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27618704	.	A	.	.	LowGQX	END=27618890	GT	./.
chr1	27620511	.	A	.	.	LowGQX	END=27620517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27620518	.	G	.	.	LowGQX	.	GT	./.
chr1	27620519	.	C	.	.	LowGQX	END=27620520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27620521	.	T	.	.	LowGQX	.	GT	./.
chr1	27620522	.	G	.	.	LowGQX	END=27620526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27620527	.	A	.	.	LowGQX	END=27620610	GT	./.
chr1	27621003	.	A	.	.	LowGQX	END=27621014	GT	./.
chr1	27621015	.	A	.	.	LowGQX	END=27621074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27621075	.	C	.	.	LowGQX	.	GT	./.
chr1	27621076	.	A	.	.	LowGQX	END=27621122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27622805	.	C	.	.	LowGQX	END=27622810	GT	./.
chr1	27622811	.	C	.	.	LowGQX	END=27622900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27622901	.	T	.	.	LowGQX	END=27622904	GT	./.
chr1	27623538	.	G	.	.	LowGQX	END=27623649	GT	./.
chr1	27624427	.	A	.	.	LowGQX	.	GT	./.
chr1	27624428	.	G	.	.	LowGQX	END=27624431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27624432	.	C	.	.	LowGQX	.	GT	./.
chr1	27624433	.	C	.	.	LowGQX	END=27624434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27624435	.	A	.	.	LowGQX	.	GT	./.
chr1	27624436	.	G	.	.	LowGQX	END=27624440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27624441	.	G	.	.	LowGQX	.	GT	./.
chr1	27624442	.	C	.	.	LowGQX	END=27624446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27624447	.	A	.	2.30	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0:60:0
chr1	27624448	.	C	.	.	LowGQX	END=27624451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27624452	.	A	.	30.88	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:1.82:60:2
chr1	27624453	.	C	.	.	LowGQX	END=27624459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27624460	.	C	.	.	LowGQX	.	GT	./.
chr1	27624461	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27624462	.	T	.	.	LowGQX	.	GT	./.
chr1	27624463	.	G	.	.	LowGQX	END=27624464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27624465	.	G	.	.	LowGQX	.	GT	./.
chr1	27624466	.	A	.	.	LowGQX	END=27624470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27624471	.	G	.	.	LowGQX	.	GT	./.
chr1	27624472	.	C	.	.	LowGQX	END=27624473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27624474	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	27624475	.	G	.	.	LowGQX	END=27624479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27624480	.	T	.	5.68	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:2:0.01:60:0
chr1	27624481	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27624482	.	A	.	.	LowGQX	.	GT	./.
chr1	27624483	.	G	.	.	LowGQX	END=27624487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27624488	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	27624489	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27624490	.	G	.	.	LowGQX	.	GT	./.
chr1	27624491	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27624492	.	C	.	.	LowGQX	END=27624493	GT	./.
chr1	27624494	.	G	.	.	LowGQX	END=27624496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27624497	.	A	.	.	LowGQX	.	GT	./.
chr1	27624498	.	G	.	.	LowGQX	END=27624504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27624505	.	A	.	.	LowGQX	END=27624507	GT	./.
chr1	27624508	.	C	.	.	LowGQX	END=27624515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27624516	.	T	.	.	LowGQX	END=27624518	GT	./.
chr1	27624519	.	G	.	.	LowGQX	END=27624521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27624522	.	T	.	.	LowGQX	END=27624526	GT	./.
chr1	27624527	.	G	.	.	LowGQX	END=27624528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27624529	.	A	.	.	LowGQX	END=27624531	GT	./.
chr1	27624532	.	G	.	.	LowGQX	END=27624570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27624571	.	A	.	10.70	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.05:60:0
chr1	27624572	.	A	.	.	LowGQX	END=27624604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27627715	.	A	.	.	LowGQX	END=27627954	GT	./.
chr1	27630110	.	A	.	.	LowGQX	END=27630309	GT	./.
chr1	27631490	.	A	.	.	LowGQX	END=27631686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27632675	.	A	.	.	LowGQX	END=27632876	GT	./.
chr1	27648687	.	G	.	.	LowGQX	END=27648884	GT	./.
chr1	27657204	.	C	.	.	LowGQX	END=27657303	GT	./.
chr1	27657444	.	T	.	.	LowGQX	END=27657543	GT	./.
chr1	27658527	.	T	.	.	LowGQX	END=27658617	GT	./.
chr1	27658618	.	G	.	.	LowGQX	END=27658626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27658902	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27658903	.	A	.	.	LowGQX	.	GT	./.
chr1	27658904	.	G	.	.	LowGQX	END=27658907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27658908	.	G	.	.	LowGQX	.	GT	./.
chr1	27658909	.	G	.	.	LowGQX	END=27658915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27658916	.	A	.	.	LowGQX	.	GT	./.
chr1	27658917	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27658918	.	C	.	.	LowGQX	END=27659001	GT	./.
chr1	27659839	.	A	.	.	LowGQX	END=27659938	GT	./.
chr1	27660447	.	A	.	.	LowGQX	END=27660547	GT	./.
chr1	27660640	.	A	.	.	LowGQX	END=27660774	GT	./.
chr1	27661119	.	A	.	.	LowGQX	END=27661218	GT	./.
chr1	27661864	.	T	.	.	LowGQX	END=27661879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27661880	.	T	.	.	LowGQX	.	GT	./.
chr1	27661881	.	T	.	.	LowGQX	END=27661898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27661899	.	C	.	.	LowGQX	.	GT	./.
chr1	27661900	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27661901	.	T	.	.	LowGQX	.	GT	./.
chr1	27661902	.	T	.	.	LowGQX	END=27661906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27661907	.	C	.	.	LowGQX	END=27661908	GT	./.
chr1	27661909	.	T	.	.	LowGQX	END=27661927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27661928	.	A	.	.	LowGQX	.	GT	./.
chr1	27661929	.	C	.	.	LowGQX	END=27661942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27661943	.	T	.	.	LowGQX	.	GT	./.
chr1	27661944	.	T	.	.	LowGQX	END=27661950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27661951	.	C	.	.	LowGQX	.	GT	./.
chr1	27661952	.	C	.	.	LowGQX	END=27661957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27661958	.	T	.	.	LowGQX	.	GT	./.
chr1	27661959	.	G	.	.	LowGQX	END=27661963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27671824	.	T	.	.	LowGQX	END=27672018	GT	./.
chr1	27673889	.	C	.	.	LowGQX	END=27674062	GT	./.
chr1	27674286	.	C	.	.	LowGQX	END=27674304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	27674305	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	27674306	.	G	.	.	LowGQX	END=27674313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	27674314	.	G	.	.	LowGQX	.	GT	./.
chr1	27674315	.	C	.	.	LowGQX	END=27674321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27674322	.	A	.	.	LowGQX	.	GT	./.
chr1	27674323	.	G	.	.	LowGQX	END=27674325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27674326	.	A	.	.	LowGQX	.	GT	./.
chr1	27674327	.	G	.	.	LowGQX	END=27674328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27674329	.	C	.	.	LowGQX	.	GT	./.
chr1	27674330	.	T	.	.	LowGQX	END=27674331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27674332	.	A	.	.	LowGQX	.	GT	./.
chr1	27674333	.	G	.	.	LowGQX	END=27674334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27674335	.	C	.	.	LowGQX	.	GT	./.
chr1	27674336	.	T	.	.	LowGQX	END=27674347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27674348	.	G	.	.	LowGQX	END=27674349	GT	./.
chr1	27674350	.	A	.	.	LowGQX	END=27674353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27674354	.	A	.	.	LowGQX	.	GT	./.
chr1	27674355	.	G	.	.	LowGQX	END=27674372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27674373	.	T	.	.	LowGQX	.	GT	./.
chr1	27674374	.	G	.	.	LowGQX	END=27674385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27674431	.	C	.	.	LowGQX	END=27674530	GT	./.
chr1	27675558	.	T	.	.	LowGQX	END=27675608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27675609	.	T	.	.	LowGQX	END=27675657	GT	./.
chr1	27675887	.	A	.	.	LowGQX	END=27675950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27675951	.	T	.	.	LowGQX	.	GT	./.
chr1	27675952	.	C	.	.	LowGQX	END=27675972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27675973	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	27675974	.	G	.	.	LowGQX	END=27676004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27676005	.	C	.	.	LowGQX	.	GT	./.
chr1	27676006	.	C	.	.	LowGQX	END=27676011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27676012	.	T	.	.	LowGQX	.	GT	./.
chr1	27676013	.	G	.	.	LowGQX	END=27676016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27676017	.	T	.	.	LowGQX	END=27676451	GT	./.
chr1	27676452	.	C	.	.	LowGQX	END=27676511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27676512	.	T	.	.	LowGQX	END=27676625	GT	./.
chr1	27676712	.	A	.	.	LowGQX	END=27676978	GT	./.
chr1	27677283	.	A	.	.	LowGQX	END=27677342	GT	./.
chr1	27677343	.	G	.	.	LowGQX	END=27677445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27677686	.	A	.	.	LowGQX	END=27677688	GT	./.
chr1	27677689	.	C	.	.	LowGQX	END=27677694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27677695	.	T	.	.	LowGQX	.	GT	./.
chr1	27677696	.	C	.	.	LowGQX	END=27677697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27677698	.	T	.	.	LowGQX	END=27677701	GT	./.
chr1	27677702	.	G	.	.	LowGQX	END=27677706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27677707	.	T	.	.	LowGQX	END=27677708	GT	./.
chr1	27677709	.	T	.	.	LowGQX	END=27677710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27677711	.	C	.	.	LowGQX	END=27677712	GT	./.
chr1	27677713	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27677714	.	T	.	.	LowGQX	END=27677715	GT	./.
chr1	27677716	.	G	.	.	LowGQX	END=27677720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27677721	.	T	.	.	LowGQX	.	GT	./.
chr1	27677722	.	G	.	.	LowGQX	END=27677723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27677724	.	T	.	.	LowGQX	.	GT	./.
chr1	27677725	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27677726	.	C	.	.	LowGQX	.	GT	./.
chr1	27677727	.	A	.	.	LowGQX	END=27677729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27677730	.	A	.	.	LowGQX	END=27677734	GT	./.
chr1	27677735	.	C	.	.	LowGQX	END=27677740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27677741	.	T	.	.	LowGQX	.	GT	./.
chr1	27677742	.	C	.	.	LowGQX	END=27677746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27677747	.	A	.	.	LowGQX	.	GT	./.
chr1	27677748	.	G	.	.	LowGQX	END=27677749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27677750	.	T	.	.	LowGQX	.	GT	./.
chr1	27677751	.	C	.	.	LowGQX	END=27677759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27677760	.	T	.	.	LowGQX	.	GT	./.
chr1	27677761	.	C	.	.	LowGQX	END=27677774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27677775	.	G	.	.	LowGQX	END=27677777	GT	./.
chr1	27677778	.	C	.	.	LowGQX	END=27677805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27677806	.	T	.	.	LowGQX	END=27677838	GT	./.
chr1	27677945	.	A	.	.	LowGQX	END=27678050	GT	./.
chr1	27679772	.	A	.	.	LowGQX	END=27679962	GT	./.
chr1	27679963	.	C	.	.	LowGQX	END=27679966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27679967	.	A	.	.	LowGQX	.	GT	./.
chr1	27679968	.	G	.	.	LowGQX	END=27679981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27680202	.	A	.	.	LowGQX	END=27680291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27680292	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	27680293	.	T	.	.	LowGQX	END=27680310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27680311	.	C	.	.	LowGQX	.	GT	./.
chr1	27680312	.	C	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	27680313	.	C	.	.	LowGQX	END=27680345	GT	./.
chr1	27681777	.	C	.	.	LowGQX	END=27681966	GT	./.
chr1	27682149	.	C	.	.	LowGQX	END=27682209	GT	./.
chr1	27682210	.	G	.	.	LowGQX	END=27682248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27682504	.	C	.	.	LowGQX	END=27682547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27682548	.	T	.	.	LowGQX	.	GT	./.
chr1	27682549	.	C	.	.	LowGQX	END=27682588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27682589	.	A	.	.	LowGQX	END=27682603	GT	./.
chr1	27682877	.	A	.	.	LowGQX	END=27682993	GT	./.
chr1	27683049	.	C	.	.	LowGQX	END=27683053	GT	./.
chr1	27683054	.	G	.	.	LowGQX	END=27683164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27683165	.	T	.	.	LowGQX	.	GT	./.
chr1	27683166	.	G	.	.	LowGQX	END=27683202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27683203	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	27683204	.	T	.	.	LowGQX	END=27683210	GT	./.
chr1	27683211	.	A	.	.	LowGQX	END=27683232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27683233	.	C	.	.	LowGQX	.	GT	./.
chr1	27683234	.	T	.	.	LowGQX	END=27683242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27683498	.	A	.	.	LowGQX	END=27683545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27683546	.	T	.	.	LowGQX	END=27683607	GT	./.
chr1	27683889	.	A	.	.	LowGQX	END=27684069	GT	./.
chr1	27684200	.	A	.	.	LowGQX	END=27684369	GT	./.
chr1	27684637	.	G	.	.	LowGQX	END=27684662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27684663	.	T	.	.	LowGQX	.	GT	./.
chr1	27684664	.	G	.	.	LowGQX	END=27684684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27684685	.	T	.	.	LowGQX	END=27684724	GT	./.
chr1	27684725	.	G	.	.	LowGQX	END=27684737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27684738	.	G	.	.	LowGQX	END=27684847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	27684897	.	C	.	.	LowGQX	END=27685117	GT	./.
chr1	27685177	.	G	.	.	LowGQX	END=27685359	GT	./.
chr1	27685906	.	A	.	.	LowGQX	END=27685921	GT	./.
chr1	27685922	.	G	.	.	LowGQX	END=27686015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27686347	.	A	.	.	LowGQX	END=27686392	GT	./.
chr1	27686393	.	G	.	.	LowGQX	END=27686487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27686730	.	A	.	.	LowGQX	END=27686861	GT	./.
chr1	27687194	.	A	.	.	LowGQX	END=27687331	GT	./.
chr1	27687406	.	C	.	.	LowGQX	END=27687505	GT	./.
chr1	27687646	.	A	.	.	LowGQX	END=27687745	GT	./.
chr1	27687812	.	A	.	.	LowGQX	END=27687905	GT	./.
chr1	27687906	.	G	.	.	LowGQX	END=27687911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27688009	.	A	.	.	LowGQX	END=27688120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27688194	.	A	.	.	LowGQX	END=27688240	GT	./.
chr1	27688241	.	G	.	.	LowGQX	END=27688360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27688580	.	A	.	.	LowGQX	END=27688706	GT	./.
chr1	27688707	.	G	.	.	LowGQX	END=27688743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27689130	.	A	.	.	LowGQX	END=27689215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27689216	.	T	.	.	LowGQX	END=27689246	GT	./.
chr1	27689340	.	A	.	.	LowGQX	END=27689514	GT	./.
chr1	27689931	.	A	.	.	LowGQX	END=27689997	GT	./.
chr1	27689998	.	G	.	.	LowGQX	END=27690041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	27690406	.	A	.	.	LowGQX	END=27690578	GT	./.
chr1	27690693	.	A	.	.	LowGQX	END=27690712	GT	./.
chr1	27690713	.	G	.	.	LowGQX	END=27690807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27690808	.	A	.	.	LowGQX	.	GT	./.
chr1	27690809	.	A	.	.	LowGQX	END=27690834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27690835	.	A	.	.	LowGQX	.	GT	./.
chr1	27690836	.	C	.	.	LowGQX	END=27690847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27690848	.	A	.	.	LowGQX	.	GT	./.
chr1	27690849	.	C	.	.	LowGQX	END=27690850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27690851	.	A	.	.	LowGQX	.	GT	./.
chr1	27690852	.	C	.	.	LowGQX	END=27690863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27690864	.	G	.	.	LowGQX	END=27690887	GT	./.
chr1	27691114	.	C	.	.	LowGQX	END=27691130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27691131	.	T	.	.	LowGQX	.	GT	./.
chr1	27691132	.	G	.	.	LowGQX	END=27691137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27691138	.	T	.	.	LowGQX	.	GT	./.
chr1	27691139	.	G	.	.	LowGQX	END=27691142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27691143	.	T	.	.	LowGQX	.	GT	./.
chr1	27691144	.	C	.	.	LowGQX	END=27691155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27691156	.	T	.	.	LowGQX	.	GT	./.
chr1	27691157	.	T	.	.	LowGQX	END=27691176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27691177	.	T	.	.	LowGQX	.	GT	./.
chr1	27691178	.	G	.	.	LowGQX	END=27691191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27691192	.	G	.	.	LowGQX	END=27691193	GT	./.
chr1	27691194	.	C	.	.	LowGQX	END=27691200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27691201	.	T	.	.	LowGQX	END=27691213	GT	./.
chr1	27691262	.	A	.	.	LowGQX	END=27691348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27691349	.	T	.	.	LowGQX	.	GT	./.
chr1	27691350	.	G	.	.	LowGQX	END=27691405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27692736	.	C	.	.	LowGQX	END=27693090	GT	./.
chr1	27695725	.	C	.	.	PASS	END=27695751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	27695752	.	C	.	.	PASS	END=27695787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	27695788	.	T	.	.	PASS	END=27695952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	27695953	.	A	.	.	PASS	END=27695970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	27697078	.	C	.	.	PASS	END=27697104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	27697105	.	A	.	.	PASS	END=27697137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	27697138	.	C	.	.	PASS	END=27697200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	27697201	.	C	.	.	PASS	END=27697223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	27697332	.	A	.	.	PASS	END=27697428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	27697429	.	A	.	.	PASS	END=27697459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	27697460	.	A	.	.	PASS	END=27697465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	27699625	.	A	.	.	PASS	END=27699733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	27699734	.	G	.	.	PASS	END=27699756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	27699946	.	C	.	.	PASS	END=27700045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	27700429	.	G	.	.	PASS	END=27700468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	27700469	.	G	.	.	PASS	END=27700528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	27700845	.	A	.	.	PASS	END=27700898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	27700899	.	A	.	.	PASS	END=27700944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	27701147	.	G	.	.	PASS	END=27701176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	27701177	.	A	.	.	PASS	END=27701215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr1	27701216	.	C	.	.	PASS	END=27701306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:91:60
chr1	27701307	.	C	.	.	PASS	END=27701352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:60
chr1	27701353	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:49:60
chr1	27701354	.	C	.	.	PASS	END=27701361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	27701362	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:72:60
chr1	27701363	.	G	.	.	PASS	END=27701365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	27705946	.	C	.	.	LowGQX	END=27706045	GT	./.
chr1	27706535	.	A	.	.	LowGQX	END=27706687	GT	./.
chr1	27708243	.	A	.	.	LowGQX	END=27708342	GT	./.
chr1	27708629	.	A	.	.	LowGQX	END=27708814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27708815	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	27708816	.	A	.	.	LowGQX	END=27708883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27708884	.	A	.	.	LowGQX	END=27708891	GT	./.
chr1	27708988	.	A	.	.	LowGQX	END=27709159	GT	./.
chr1	27709636	.	A	.	.	LowGQX	END=27709735	GT	./.
chr1	27720301	.	C	.	.	LowGQX	END=27720354	GT	./.
chr1	27720355	.	A	.	.	LowGQX	END=27720365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27720366	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	27720367	.	G	.	.	LowGQX	END=27720368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27720369	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	27720370	.	G	.	.	LowGQX	END=27720372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27720373	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	27720374	.	G	.	.	LowGQX	END=27720443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27720444	.	T	.	.	LowGQX	END=27721297	GT	./.
chr1	27734681	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:59
chr1	27734682	.	G	.	.	LowGQX	.	GT	./.
chr1	27734683	.	T	.	.	LowGQX	END=27734696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:59
chr1	27734697	.	C	.	.	LowGQX	.	GT	./.
chr1	27734698	.	G	.	.	LowGQX	END=27734704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:59
chr1	27734705	.	T	.	33	LowGQX	DP=2;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:59:3
chr1	27734706	.	C	.	33	LowGQX	DP=2;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:59:3
chr1	27734707	.	A	.	.	LowGQX	END=27734710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:59
chr1	27734711	.	T	.	33	LowGQX	DP=2;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:59:3
chr1	27734712	.	C	.	33	LowGQX	DP=2;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:59:3
chr1	27734713	.	A	.	.	LowGQX	END=27734716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:59
chr1	27734717	.	G	.	.	LowGQX	.	GT	./.
chr1	27734718	.	A	.	.	LowGQX	END=27734740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr1	27734741	.	T	.	.	LowGQX	END=27734842	GT	./.
chr1	27736184	.	A	.	.	LowGQX	END=27736332	GT	./.
chr1	27736333	.	G	.	.	LowGQX	END=27736357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736358	.	T	.	.	LowGQX	.	GT	./.
chr1	27736359	.	C	.	.	LowGQX	END=27736373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736374	.	G	.	.	LowGQX	.	GT	./.
chr1	27736375	.	A	.	.	LowGQX	END=27736382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736383	.	G	.	.	LowGQX	.	GT	./.
chr1	27736384	.	G	.	.	LowGQX	END=27736390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736391	.	C	.	.	LowGQX	.	GT	./.
chr1	27736392	.	A	.	.	LowGQX	END=27736395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736396	.	T	.	.	LowGQX	.	GT	./.
chr1	27736397	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736398	.	G	.	.	LowGQX	.	GT	./.
chr1	27736399	.	G	.	.	LowGQX	END=27736400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736401	.	T	.	.	LowGQX	.	GT	./.
chr1	27736402	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736403	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	27736404	.	T	.	.	LowGQX	END=27736405	GT	./.
chr1	27736406	.	A	.	.	LowGQX	END=27736408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736409	.	T	.	.	LowGQX	.	GT	./.
chr1	27736410	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736411	.	C	.	.	LowGQX	.	GT	./.
chr1	27736412	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736413	.	G	.	.	LowGQX	END=27736415	GT	./.
chr1	27736416	.	G	.	.	LowGQX	END=27736423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736424	.	A	.	.	LowGQX	.	GT	./.
chr1	27736425	.	G	.	.	LowGQX	END=27736434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736435	.	G	.	.	LowGQX	END=27736437	GT	./.
chr1	27736438	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736439	.	A	.	.	LowGQX	END=27736440	GT	./.
chr1	27736441	.	C	.	.	LowGQX	END=27736442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736443	.	A	.	.	LowGQX	END=27736445	GT	./.
chr1	27736446	.	T	.	.	LowGQX	END=27736448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736449	.	G	.	.	LowGQX	END=27736450	GT	./.
chr1	27736451	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736452	.	T	.	.	LowGQX	.	GT	./.
chr1	27736453	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736454	.	A	.	.	LowGQX	.	GT	./.
chr1	27736455	.	G	.	.	LowGQX	END=27736459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736460	.	G	.	.	LowGQX	.	GT	./.
chr1	27736461	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736462	.	A	.	.	LowGQX	END=27736465	GT	./.
chr1	27736466	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736467	.	G	.	.	LowGQX	.	GT	./.
chr1	27736468	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736469	.	G	.	.	LowGQX	.	GT	./.
chr1	27736470	.	G	.	.	LowGQX	END=27736471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736472	.	T	.	.	LowGQX	END=27736474	GT	./.
chr1	27736475	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736476	.	G	.	.	LowGQX	.	GT	./.
chr1	27736477	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736478	.	T	.	.	LowGQX	.	GT	./.
chr1	27736479	.	G	.	.	LowGQX	END=27736483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736484	.	A	.	.	LowGQX	END=27736493	GT	./.
chr1	27736494	.	G	.	.	LowGQX	END=27736495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736496	.	A	.	.	LowGQX	END=27736499	GT	./.
chr1	27736500	.	C	.	.	LowGQX	END=27736501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736502	.	A	.	.	LowGQX	.	GT	./.
chr1	27736503	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736504	.	A	.	.	LowGQX	END=27736505	GT	./.
chr1	27736506	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736507	.	C	.	.	LowGQX	.	GT	./.
chr1	27736508	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736509	.	A	.	.	LowGQX	.	GT	./.
chr1	27736510	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736511	.	A	.	.	LowGQX	.	GT	./.
chr1	27736512	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736513	.	G	.	.	LowGQX	END=27736514	GT	./.
chr1	27736515	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736516	.	G	.	.	LowGQX	END=27736517	GT	./.
chr1	27736518	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736519	.	G	.	.	LowGQX	.	GT	./.
chr1	27736520	.	T	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	27736521	.	G	.	.	LowGQX	END=27736523	GT	./.
chr1	27736524	.	G	.	.	LowGQX	END=27736525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736526	.	T	.	.	LowGQX	.	GT	./.
chr1	27736527	.	G	.	.	LowGQX	END=27736528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736529	.	G	.	.	LowGQX	.	GT	./.
chr1	27736530	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736531	.	T	.	.	LowGQX	END=27736532	GT	./.
chr1	27736533	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736534	.	C	.	.	LowGQX	.	GT	./.
chr1	27736535	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736536	.	A	.	.	LowGQX	END=27736537	GT	./.
chr1	27736538	.	C	.	.	LowGQX	END=27736540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736541	.	T	.	.	LowGQX	.	GT	./.
chr1	27736542	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736543	.	G	.	.	LowGQX	END=27736544	GT	./.
chr1	27736545	.	G	.	.	LowGQX	END=27736546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736547	.	C	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	27736548	.	G	.	.	LowGQX	END=27736549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736550	.	A	.	.	LowGQX	.	GT	./.
chr1	27736551	.	G	.	.	LowGQX	END=27736552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736553	.	T	.	.	LowGQX	.	GT	./.
chr1	27736554	.	G	.	.	LowGQX	END=27736555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736556	.	C	.	.	LowGQX	.	GT	./.
chr1	27736557	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736558	.	G	.	.	LowGQX	END=27736559	GT	./.
chr1	27736560	.	G	.	.	LowGQX	END=27736561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736562	.	G	.	.	LowGQX	.	GT	./.
chr1	27736563	.	G	.	.	LowGQX	END=27736567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736568	.	T	.	.	LowGQX	.	GT	./.
chr1	27736569	.	G	.	.	LowGQX	END=27736580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736581	.	C	.	.	LowGQX	END=27736582	GT	./.
chr1	27736583	.	G	.	.	LowGQX	END=27736640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27736641	.	A	.	.	LowGQX	.	GT	./.
chr1	27736642	.	C	.	.	LowGQX	END=27736702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27739064	.	A	.	.	LowGQX	END=27739223	GT	./.
chr1	27741325	.	A	.	.	LowGQX	END=27741459	GT	./.
chr1	27742477	.	A	.	.	LowGQX	END=27742556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27742557	.	A	.	.	LowGQX	.	GT	./.
chr1	27742558	.	G	.	.	LowGQX	END=27742580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27742581	.	C	.	.	LowGQX	.	GT	./.
chr1	27742582	.	T	.	.	LowGQX	END=27742598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27744768	.	A	.	.	LowGQX	END=27744925	GT	./.
chr1	27745453	.	A	.	.	LowGQX	END=27745591	GT	./.
chr1	27755269	.	A	.	.	LowGQX	END=27755402	GT	./.
chr1	27873803	.	C	.	.	LowGQX	END=27873893	GT	./.
chr1	27873894	.	C	.	.	LowGQX	END=27873918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27873919	.	T	.	.	LowGQX	.	GT	./.
chr1	27873920	.	A	.	.	LowGQX	END=27874088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27874089	.	T	.	.	LowGQX	.	GT	./.
chr1	27874090	.	T	.	.	LowGQX	END=27874102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27874103	.	T	.	.	LowGQX	.	GT	./.
chr1	27874104	.	G	.	.	LowGQX	END=27874158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27874159	.	C	.	5.79	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr1	27874160	.	A	.	.	LowGQX	END=27874182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27874183	.	T	.	.	LowGQX	.	GT	./.
chr1	27874184	.	G	.	.	LowGQX	END=27874186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27874187	.	T	.	.	LowGQX	.	GT	./.
chr1	27874188	.	T	.	.	LowGQX	END=27874191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27874192	.	A	.	.	LowGQX	.	GT	./.
chr1	27874193	.	G	.	.	LowGQX	END=27874202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27874203	.	C	.	.	LowGQX	.	GT	./.
chr1	27874204	.	G	.	.	LowGQX	END=27874234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27874235	.	T	.	.	LowGQX	.	GT	./.
chr1	27874236	.	G	.	.	LowGQX	END=27874256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27874257	.	T	.	.	LowGQX	.	GT	./.
chr1	27874258	.	C	.	.	LowGQX	END=27874259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27874260	.	T	.	.	LowGQX	.	GT	./.
chr1	27874261	.	A	.	.	LowGQX	END=27874262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27874263	.	T	.	.	LowGQX	.	GT	./.
chr1	27874264	.	G	.	.	LowGQX	END=27874265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27874266	.	G	.	.	LowGQX	.	GT	./.
chr1	27874267	.	G	.	.	LowGQX	END=27874300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27874301	.	G	.	.	LowGQX	END=27876213	GT	./.
chr1	27876214	.	C	.	.	LowGQX	END=27876322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27876323	.	C	.	.	LowGQX	.	GT	./.
chr1	27876324	.	C	.	.	LowGQX	END=27876355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27876356	.	A	.	.	LowGQX	END=27877058	GT	./.
chr1	27877059	.	A	.	.	LowGQX	END=27877086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27877087	.	A	.	.	LowGQX	.	GT	./.
chr1	27877088	.	C	.	.	LowGQX	END=27877247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27877248	.	A	.	.	LowGQX	END=27878628	GT	./.
chr1	27939423	.	G	.	.	PASS	END=27939454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	27939455	.	T	.	.	PASS	END=27939536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	27939537	.	T	.	.	PASS	END=27939559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	27939560	.	T	.	.	PASS	END=27939570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	27939571	.	C	.	.	PASS	END=27939585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	27939586	.	T	.	.	PASS	END=27939596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:90:60
chr1	27939597	.	T	.	.	PASS	END=27939612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	27939613	.	A	.	.	PASS	END=27939632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	27939633	.	C	.	.	PASS	END=27939635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	27939728	.	A	.	.	PASS	END=27939789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	27939790	.	C	.	.	PASS	END=27939801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	27939802	.	T	.	.	PASS	END=27939818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	27939819	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:48:60
chr1	27939820	.	G	.	.	PASS	END=27939823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	27939824	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr1	27939825	.	G	.	.	PASS	END=27939835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	27939836	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:27:60
chr1	27939837	.	G	.	.	PASS	END=27939846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	27939847	.	T	.	.	PASS	END=27939852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	27939853	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	27939854	.	C	.	.	PASS	END=27939855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	27939856	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	27939857	.	G	.	.	PASS	END=27939858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	27939859	.	A	.	.	LowGQX	END=27939860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	27939861	.	C	.	.	PASS	END=27939862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	27939863	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr1	27940939	.	A	.	.	LowGQX	END=27941096	GT	./.
chr1	27941350	.	G	.	.	LowGQX	END=27941449	GT	./.
chr1	27941943	.	A	.	.	LowGQX	END=27941980	GT	./.
chr1	27941981	.	C	.	.	LowGQX	END=27942006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942007	.	A	.	.	LowGQX	.	GT	./.
chr1	27942008	.	C	.	.	LowGQX	END=27942024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942025	.	A	.	.	LowGQX	.	GT	./.
chr1	27942026	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942027	.	C	.	.	LowGQX	.	GT	./.
chr1	27942028	.	A	.	.	LowGQX	END=27942032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942033	.	C	.	.	LowGQX	.	GT	./.
chr1	27942034	.	A	.	.	LowGQX	END=27942035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942036	.	G	.	.	LowGQX	END=27942037	GT	./.
chr1	27942038	.	C	.	.	LowGQX	END=27942055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942056	.	A	.	.	LowGQX	.	GT	./.
chr1	27942057	.	G	.	.	LowGQX	END=27942082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942083	.	T	.	.	LowGQX	.	GT	./.
chr1	27942084	.	C	.	.	LowGQX	END=27942090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942091	.	T	.	.	LowGQX	.	GT	./.
chr1	27942092	.	T	.	.	LowGQX	END=27942093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942094	.	A	.	.	LowGQX	.	GT	./.
chr1	27942095	.	C	.	.	LowGQX	END=27942096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942097	.	G	.	.	LowGQX	.	GT	./.
chr1	27942098	.	C	.	.	LowGQX	END=27942099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942100	.	A	.	.	LowGQX	.	GT	./.
chr1	27942101	.	C	.	.	LowGQX	END=27942102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942103	.	T	.	.	LowGQX	.	GT	./.
chr1	27942104	.	T	.	.	LowGQX	END=27942118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942119	.	A	.	.	LowGQX	.	GT	./.
chr1	27942120	.	C	.	.	LowGQX	END=27942123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942124	.	C	.	.	LowGQX	.	GT	./.
chr1	27942125	.	C	.	.	LowGQX	END=27942126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942198	.	A	.	.	LowGQX	END=27942274	GT	./.
chr1	27942275	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942276	.	G	.	.	LowGQX	.	GT	./.
chr1	27942277	.	T	.	.	LowGQX	END=27942280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942281	.	T	.	.	LowGQX	END=27942282	GT	./.
chr1	27942283	.	G	.	.	LowGQX	END=27942295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942296	.	T	.	.	LowGQX	.	GT	./.
chr1	27942297	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942298	.	T	.	.	LowGQX	.	GT	./.
chr1	27942299	.	G	.	.	LowGQX	END=27942301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942302	.	G	.	.	LowGQX	.	GT	./.
chr1	27942303	.	C	.	.	LowGQX	END=27942313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942314	.	T	.	.	LowGQX	.	GT	./.
chr1	27942315	.	G	.	.	LowGQX	END=27942317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942318	.	G	.	.	LowGQX	.	GT	./.
chr1	27942319	.	G	.	.	LowGQX	END=27942334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27942335	.	T	.	.	LowGQX	END=27942336	GT	./.
chr1	27942337	.	C	.	.	LowGQX	END=27942357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27943366	.	A	.	.	LowGQX	END=27943519	GT	./.
chr1	27943702	.	A	.	.	LowGQX	END=27943809	GT	./.
chr1	27948068	.	A	.	.	LowGQX	END=27948084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27948085	.	G	.	.	LowGQX	END=27948170	GT	./.
chr1	27949551	.	A	.	.	LowGQX	END=27949657	GT	./.
chr1	27950062	.	T	.	.	LowGQX	END=27950084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27950085	.	G	.	.	LowGQX	END=27950429	GT	./.
chr1	27992890	.	G	.	.	LowGQX	END=27992989	GT	./.
chr1	27994735	.	A	.	.	LowGQX	END=27994760	GT	./.
chr1	27994761	.	G	.	.	LowGQX	END=27994888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	27994958	.	T	.	.	LowGQX	END=27994989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27994990	.	T	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	27994991	.	C	.	.	LowGQX	END=27995003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	27995004	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	27995005	.	A	.	.	LowGQX	END=27995057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	27995729	.	T	.	.	LowGQX	END=27995828	GT	./.
chr1	28052529	.	T	.	.	LowGQX	END=28052682	GT	./.
chr1	28053911	.	A	.	.	LowGQX	END=28053912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28053913	.	G	.	.	LowGQX	.	GT	./.
chr1	28053914	.	T	.	.	LowGQX	END=28053917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28053918	.	C	.	.	LowGQX	.	GT	./.
chr1	28053919	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28053920	.	T	.	.	LowGQX	END=28053921	GT	./.
chr1	28053922	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28053923	.	T	.	.	LowGQX	.	GT	./.
chr1	28053924	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28053925	.	C	.	.	LowGQX	.	GT	./.
chr1	28053926	.	T	.	.	LowGQX	END=28053932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28053933	.	T	.	.	LowGQX	.	GT	./.
chr1	28053934	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28053935	.	T	.	.	LowGQX	.	GT	./.
chr1	28053936	.	T	.	.	LowGQX	END=28053937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28053938	.	C	.	.	LowGQX	END=28053940	GT	./.
chr1	28053941	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28053942	.	T	.	.	LowGQX	.	GT	./.
chr1	28053943	.	T	.	.	LowGQX	END=28053945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28053946	.	G	.	.	LowGQX	.	GT	./.
chr1	28053947	.	A	.	.	LowGQX	END=28053952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28053953	.	T	.	.	LowGQX	END=28053954	GT	./.
chr1	28053955	.	T	.	.	LowGQX	END=28053958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28053959	.	A	.	.	LowGQX	END=28053960	GT	./.
chr1	28053961	.	T	.	.	LowGQX	END=28053963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28053964	.	T	.	.	LowGQX	END=28053965	GT	./.
chr1	28053966	.	T	.	.	LowGQX	END=28053971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28053972	.	T	.	.	LowGQX	.	GT	./.
chr1	28053973	.	T	.	.	LowGQX	END=28053977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28053978	.	T	.	.	LowGQX	.	GT	./.
chr1	28053979	.	T	.	.	LowGQX	END=28053980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28053981	.	A	.	.	LowGQX	END=28054034	GT	./.
chr1	28054035	.	A	.	.	LowGQX	END=28054036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28054037	.	C	.	.	LowGQX	END=28054038	GT	./.
chr1	28054039	.	G	.	.	LowGQX	END=28054054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28054055	.	T	.	.	LowGQX	.	GT	./.
chr1	28054056	.	T	.	.	LowGQX	END=28054065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28056691	.	T	.	.	LowGQX	END=28056724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28056725	.	T	.	.	LowGQX	END=28056844	GT	./.
chr1	28059092	.	G	.	.	LowGQX	END=28059116	GT	./.
chr1	28059117	.	A	.	.	LowGQX	END=28059191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28060510	.	A	.	.	LowGQX	END=28060513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28060514	.	T	.	.	LowGQX	.	GT	./.
chr1	28060515	.	T	.	.	LowGQX	END=28060528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28060529	.	T	.	.	LowGQX	.	GT	./.
chr1	28060530	.	T	.	.	LowGQX	END=28060536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28060537	.	T	.	.	LowGQX	.	GT	./.
chr1	28060538	.	T	.	.	LowGQX	END=28060564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28060565	.	C	.	.	LowGQX	END=28060696	GT	./.
chr1	28071163	.	A	.	.	LowGQX	END=28071324	GT	./.
chr1	28075573	.	T	.	.	LowGQX	END=28075672	GT	./.
chr1	28081704	.	A	.	.	LowGQX	END=28081843	GT	./.
chr1	28086035	.	A	.	.	LowGQX	END=28086168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28086407	.	T	.	.	LowGQX	END=28086428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	28086429	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	28086430	.	C	.	.	LowGQX	END=28086438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	28086439	.	C	.	32.98	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3:60:3
chr1	28086440	.	C	.	.	LowGQX	END=28086464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	28086465	.	G	.	5.79	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.01:60:0
chr1	28086466	.	T	.	.	LowGQX	END=28086490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	28086491	.	C	.	.	LowGQX	.	GT	./.
chr1	28086492	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	28086493	.	G	.	.	LowGQX	.	GT	./.
chr1	28086494	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	28086495	.	G	.	.	LowGQX	.	GT	./.
chr1	28086496	.	C	.	.	LowGQX	END=28086544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28086545	.	A	.	.	LowGQX	.	GT	./.
chr1	28086546	.	A	.	.	LowGQX	END=28086551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28086552	.	A	.	.	LowGQX	.	GT	./.
chr1	28086553	.	G	.	.	LowGQX	END=28086560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28086561	.	G	.	.	LowGQX	.	GT	./.
chr1	28086562	.	G	.	.	LowGQX	END=28086566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28087000	.	C	.	.	LowGQX	END=28087099	GT	./.
chr1	28099817	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28099818	.	C	.	.	LowGQX	.	GT	./.
chr1	28099819	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28099820	.	T	.	.	LowGQX	.	GT	./.
chr1	28099821	.	G	.	.	LowGQX	END=28099822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28099823	.	C	.	.	LowGQX	.	GT	./.
chr1	28099824	.	A	.	.	LowGQX	END=28099832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28099833	.	C	.	.	LowGQX	.	GT	./.
chr1	28099834	.	T	.	.	LowGQX	END=28099838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28099839	.	C	.	.	LowGQX	.	GT	./.
chr1	28099840	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28099841	.	T	.	.	LowGQX	.	GT	./.
chr1	28099842	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28099843	.	T	.	.	LowGQX	.	GT	./.
chr1	28099844	.	A	.	.	LowGQX	END=28099848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28099849	.	A	.	.	LowGQX	.	GT	./.
chr1	28099850	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28099851	.	C	.	.	LowGQX	END=28099938	GT	./.
chr1	28116058	.	T	.	.	LowGQX	END=28116157	GT	./.
chr1	28120042	.	A	.	.	LowGQX	END=28120145	GT	./.
chr1	28128187	.	A	.	.	LowGQX	END=28128366	GT	./.
chr1	28136729	.	A	.	.	LowGQX	END=28136799	GT	./.
chr1	28136800	.	G	.	.	LowGQX	END=28136828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28138488	.	T	.	.	LowGQX	END=28138587	GT	./.
chr1	28138672	.	A	.	.	LowGQX	END=28138781	GT	./.
chr1	28144349	.	T	.	.	LowGQX	END=28144448	GT	./.
chr1	28146153	.	T	.	.	LowGQX	END=28146172	GT	./.
chr1	28146173	.	C	.	.	LowGQX	END=28146180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28146181	.	G	.	.	LowGQX	.	GT	./.
chr1	28146182	.	A	.	.	LowGQX	END=28146186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28146187	.	T	.	.	LowGQX	.	GT	./.
chr1	28146188	.	C	.	.	LowGQX	END=28146192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28146193	.	G	.	.	LowGQX	.	GT	./.
chr1	28146194	.	T	.	.	LowGQX	END=28146220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28146221	.	T	.	.	LowGQX	.	GT	./.
chr1	28146222	.	A	.	.	LowGQX	END=28146252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28148740	.	A	.	.	LowGQX	END=28148842	GT	./.
chr1	28157265	.	G	.	.	LowGQX	END=28157281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	28157282	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	28157283	.	C	.	.	LowGQX	END=28157337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	28157338	.	A	.	.	LowGQX	.	GT	./.
chr1	28157339	.	G	.	.	LowGQX	END=28157342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	28157343	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	28157344	.	A	.	.	LowGQX	END=28157354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	28157355	.	A	.	.	LowGQX	.	GT	./.
chr1	28157356	.	G	.	.	LowGQX	END=28157404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	28157405	.	G	.	.	LowGQX	.	GT	./.
chr1	28157406	.	A	.	.	LowGQX	END=28157409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	28157410	.	G	.	10.70	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.05:60:0
chr1	28157411	.	C	.	.	LowGQX	END=28157413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28157414	.	G	.	.	LowGQX	END=28157424	GT	./.
chr1	28159248	.	T	.	.	LowGQX	END=28159347	GT	./.
chr1	28160912	.	C	.	.	LowGQX	.	GT	./.
chr1	28160913	.	A	.	.	LowGQX	END=28160914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28160915	.	C	.	.	LowGQX	.	GT	./.
chr1	28160916	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28160917	.	C	.	.	LowGQX	END=28161077	GT	./.
chr1	28165208	.	A	.	.	LowGQX	END=28165365	GT	./.
chr1	28167523	.	A	.	.	LowGQX	END=28167530	GT	./.
chr1	28167531	.	G	.	.	LowGQX	END=28167545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28167546	.	A	.	.	LowGQX	.	GT	./.
chr1	28167547	.	C	.	.	LowGQX	END=28167592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28167593	.	A	.	.	LowGQX	.	GT	./.
chr1	28167594	.	C	.	.	LowGQX	END=28167635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	28167636	.	A	.	.	LowGQX	.	GT	./.
chr1	28167637	.	G	.	.	LowGQX	END=28167684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28167685	.	T	.	.	LowGQX	.	GT	./.
chr1	28167686	.	G	.	.	LowGQX	END=28167747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28169695	.	A	.	.	LowGQX	END=28169884	GT	./.
chr1	28173522	.	C	.	.	LowGQX	END=28173621	GT	./.
chr1	28176602	.	A	.	.	LowGQX	END=28176661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28176662	.	T	.	.	LowGQX	.	GT	./.
chr1	28176663	.	G	.	.	LowGQX	END=28176676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28176677	.	T	.	.	LowGQX	END=28176959	GT	./.
chr1	28178050	.	G	.	.	LowGQX	END=28178163	GT	./.
chr1	28199020	.	C	.	.	LowGQX	END=28199179	GT	./.
chr1	28203097	.	A	.	.	LowGQX	END=28203103	GT	./.
chr1	28203104	.	A	.	.	LowGQX	END=28203129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28203130	.	C	.	.	LowGQX	.	GT	./.
chr1	28203131	.	T	.	.	LowGQX	END=28203146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28203147	.	A	.	.	LowGQX	.	GT	./.
chr1	28203148	.	C	.	.	LowGQX	END=28203158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28203159	.	T	.	.	LowGQX	.	GT	./.
chr1	28203160	.	C	.	.	LowGQX	END=28203200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28203201	.	A	.	.	LowGQX	.	GT	./.
chr1	28203202	.	G	.	.	LowGQX	END=28203210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28203211	.	G	.	.	LowGQX	.	GT	./.
chr1	28203212	.	A	.	.	LowGQX	END=28203241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28206153	.	A	.	.	LowGQX	END=28206154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28206155	.	G	.	.	LowGQX	END=28206156	GT	./.
chr1	28206157	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28206158	.	A	.	.	LowGQX	END=28206160	GT	./.
chr1	28206161	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28206162	.	C	.	.	LowGQX	.	GT	./.
chr1	28206163	.	A	.	.	LowGQX	END=28206174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28206175	.	A	.	.	LowGQX	.	GT	./.
chr1	28206176	.	C	.	.	LowGQX	END=28206179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28206180	.	A	.	.	LowGQX	.	GT	./.
chr1	28206181	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28206182	.	A	.	.	LowGQX	END=28206184	GT	./.
chr1	28206185	.	G	.	.	LowGQX	END=28206186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28206187	.	T	.	.	LowGQX	.	GT	./.
chr1	28206188	.	A	.	.	LowGQX	END=28206189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28206190	.	G	.	.	LowGQX	.	GT	./.
chr1	28206191	.	A	.	.	LowGQX	END=28206203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28206204	.	G	.	.	LowGQX	.	GT	./.
chr1	28206205	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28206206	.	T	.	.	LowGQX	.	GT	./.
chr1	28206207	.	G	.	.	LowGQX	END=28206209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28206210	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	28206211	.	T	.	.	LowGQX	.	GT	./.
chr1	28206212	.	C	.	.	LowGQX	END=28206221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28206222	.	T	.	.	LowGQX	.	GT	./.
chr1	28206223	.	C	.	.	LowGQX	END=28206224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28206225	.	G	.	.	LowGQX	.	GT	./.
chr1	28206226	.	A	.	.	LowGQX	END=28206238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28206239	.	T	.	.	LowGQX	END=28206240	GT	./.
chr1	28206241	.	C	.	.	LowGQX	END=28206245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28206246	.	T	.	.	LowGQX	.	GT	./.
chr1	28206247	.	T	.	.	LowGQX	END=28206253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28206254	.	T	.	.	LowGQX	END=28206567	GT	./.
chr1	28208480	.	A	.	.	LowGQX	END=28208762	GT	./.
chr1	28208763	.	G	.	.	LowGQX	END=28209001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28209002	.	C	.	.	LowGQX	END=28209111	GT	./.
chr1	28209112	.	T	.	.	LowGQX	END=28209232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	28209233	.	T	.	.	LowGQX	END=28209556	GT	./.
chr1	28211804	.	A	.	.	LowGQX	END=28211964	GT	./.
chr1	28212356	.	A	.	.	LowGQX	END=28212455	GT	./.
chr1	28218667	.	G	.	.	LowGQX	END=28218716	GT	./.
chr1	28218717	.	G	.	.	LowGQX	END=28218766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28220521	.	A	.	.	LowGQX	END=28220620	GT	./.
chr1	28220799	.	A	.	.	LowGQX	END=28220910	GT	./.
chr1	28223514	.	A	.	.	LowGQX	END=28223634	GT	./.
chr1	28224132	.	T	.	.	LowGQX	END=28224231	GT	./.
chr1	28233437	.	A	.	.	LowGQX	END=28233554	GT	./.
chr1	28233690	.	A	.	.	LowGQX	END=28233795	GT	./.
chr1	28240572	.	A	.	.	LowGQX	END=28240956	GT	./.
chr1	28241105	.	C	.	.	LowGQX	END=28241160	GT	./.
chr1	28241161	.	C	.	.	LowGQX	END=28241204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28261676	.	G	.	.	LowGQX	END=28261775	GT	./.
chr1	28268781	.	T	.	.	LowGQX	END=28268855	GT	./.
chr1	28268856	.	G	.	.	LowGQX	END=28268869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28268870	.	A	.	.	LowGQX	.	GT	./.
chr1	28268871	.	A	.	.	LowGQX	END=28268877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28268878	.	G	.	.	LowGQX	.	GT	./.
chr1	28268879	.	A	.	.	LowGQX	END=28268880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28271741	.	A	.	.	LowGQX	END=28271958	GT	./.
chr1	28275471	.	A	.	.	LowGQX	END=28275570	GT	./.
chr1	28275574	.	A	.	.	LowGQX	END=28275583	GT	./.
chr1	28275584	.	C	.	.	LowGQX	END=28275596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	28275597	.	C	.	.	LowGQX	.	GT	./.
chr1	28275598	.	G	.	.	LowGQX	END=28275675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	28279724	.	A	.	.	LowGQX	END=28279871	GT	./.
chr1	28280863	.	A	.	.	LowGQX	END=28281039	GT	./.
chr1	28282193	.	A	.	.	LowGQX	END=28282291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28282292	.	T	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	28282293	.	C	.	.	LowGQX	END=28282376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28282377	.	T	.	.	LowGQX	.	GT	./.
chr1	28282458	.	A	.	.	LowGQX	END=28282667	GT	./.
chr1	28282668	.	G	.	.	LowGQX	END=28282712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	28284985	.	A	.	.	LowGQX	END=28285160	GT	./.
chr1	28285161	.	G	.	.	LowGQX	END=28285351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28286579	.	C	.	.	LowGQX	END=28286875	GT	./.
chr1	28290006	.	A	.	.	LowGQX	END=28290206	GT	./.
chr1	28293012	.	A	.	.	LowGQX	END=28293055	GT	./.
chr1	28293056	.	T	.	.	LowGQX	END=28293066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293067	.	C	.	.	LowGQX	END=28293068	GT	./.
chr1	28293069	.	C	.	.	LowGQX	END=28293071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293072	.	G	.	.	LowGQX	.	GT	./.
chr1	28293073	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293074	.	C	.	.	LowGQX	END=28293075	GT	./.
chr1	28293076	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293077	.	T	.	.	LowGQX	END=28293078	GT	./.
chr1	28293079	.	C	.	.	LowGQX	END=28293081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293082	.	A	.	.	LowGQX	.	GT	./.
chr1	28293083	.	C	.	.	LowGQX	END=28293087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293088	.	C	.	.	LowGQX	.	GT	./.
chr1	28293089	.	T	.	.	LowGQX	END=28293091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293092	.	C	.	.	LowGQX	.	GT	./.
chr1	28293093	.	C	.	.	LowGQX	END=28293094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293095	.	C	.	.	LowGQX	.	GT	./.
chr1	28293096	.	C	.	.	LowGQX	END=28293098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293099	.	G	.	.	LowGQX	.	GT	./.
chr1	28293100	.	C	.	.	LowGQX	END=28293103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293104	.	T	.	.	LowGQX	.	GT	./.
chr1	28293105	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293106	.	C	.	.	LowGQX	.	GT	./.
chr1	28293107	.	T	.	.	LowGQX	END=28293112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293113	.	T	.	.	LowGQX	.	GT	./.
chr1	28293114	.	G	.	.	LowGQX	END=28293117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293118	.	T	.	.	LowGQX	END=28293119	GT	./.
chr1	28293120	.	C	.	.	LowGQX	END=28293128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293129	.	C	.	.	LowGQX	.	GT	./.
chr1	28293130	.	T	.	.	LowGQX	END=28293133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293134	.	T	.	.	LowGQX	.	GT	./.
chr1	28293135	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293136	.	C	.	.	LowGQX	.	GT	./.
chr1	28293137	.	T	.	.	LowGQX	END=28293147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293148	.	C	.	.	LowGQX	.	GT	./.
chr1	28293149	.	T	.	.	LowGQX	END=28293153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293154	.	C	.	.	LowGQX	.	GT	./.
chr1	28293155	.	T	.	.	LowGQX	END=28293156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293157	.	T	.	.	LowGQX	.	GT	./.
chr1	28293158	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293159	.	G	.	.	LowGQX	END=28293161	GT	./.
chr1	28293162	.	C	.	.	LowGQX	END=28293170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293171	.	G	.	.	LowGQX	.	GT	./.
chr1	28293172	.	G	.	.	LowGQX	END=28293182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293183	.	G	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	28293184	.	T	.	.	LowGQX	END=28293204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28293205	.	T	.	.	LowGQX	END=28293713	GT	./.
chr1	28300968	.	T	.	.	LowGQX	END=28301067	GT	./.
chr1	28303792	.	C	.	.	LowGQX	END=28303900	GT	./.
chr1	28304883	.	A	.	.	LowGQX	END=28304987	GT	./.
chr1	28315044	.	A	.	.	LowGQX	END=28315213	GT	./.
chr1	28316206	.	A	.	.	LowGQX	END=28316304	GT	./.
chr1	28316305	.	T	.	.	LowGQX	END=28316324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28319869	.	A	.	.	LowGQX	END=28320073	GT	./.
chr1	28323811	.	A	.	.	LowGQX	END=28323910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28326466	.	C	.	.	LowGQX	END=28326476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28326477	.	G	.	.	LowGQX	.	GT	./.
chr1	28326478	.	T	.	.	LowGQX	END=28326504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28326505	.	A	.	.	LowGQX	END=28326565	GT	./.
chr1	28330839	.	C	.	.	LowGQX	END=28330938	GT	./.
chr1	28337456	.	A	.	.	LowGQX	END=28337599	GT	./.
chr1	28339620	.	A	.	.	LowGQX	END=28339807	GT	./.
chr1	28343658	.	A	.	.	LowGQX	END=28343757	GT	./.
chr1	28354298	.	A	.	.	LowGQX	END=28354439	GT	./.
chr1	28362053	.	A	.	.	LowGQX	END=28362193	GT	./.
chr1	28365334	.	T	.	.	LowGQX	END=28365433	GT	./.
chr1	28369072	.	T	.	.	LowGQX	END=28369171	GT	./.
chr1	28374866	.	C	.	.	LowGQX	END=28374965	GT	./.
chr1	28384472	.	A	.	.	LowGQX	END=28384571	GT	./.
chr1	28422253	.	C	.	.	LowGQX;LowMQ	END=28422332	GT	./.
chr1	28422333	.	C	.	.	LowGQX	END=28422644	GT	./.
chr1	28422645	.	C	.	.	LowGQX	END=28422649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28422650	.	G	.	.	LowGQX	.	GT	./.
chr1	28422651	.	C	.	.	LowGQX	END=28422710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28422711	.	C	.	.	LowGQX	.	GT	./.
chr1	28422712	.	A	.	.	LowGQX	END=28422724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28422725	.	T	.	.	LowGQX	.	GT	./.
chr1	28422726	.	C	.	.	LowGQX	END=28422729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28422730	.	A	.	.	LowGQX	.	GT	./.
chr1	28422731	.	A	.	.	LowGQX	END=28422793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28422794	.	T	.	.	LowGQX	.	GT	./.
chr1	28422795	.	T	.	.	LowGQX	END=28422806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28422807	.	C	.	.	LowGQX	.	GT	./.
chr1	28422808	.	A	.	.	LowGQX	END=28422812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28422813	.	T	.	.	LowGQX	.	GT	./.
chr1	28422814	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28422815	.	T	.	.	LowGQX	.	GT	./.
chr1	28422816	.	T	.	.	LowGQX	END=28422820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28422821	.	T	.	.	LowGQX	.	GT	./.
chr1	28422822	.	T	.	.	LowGQX	END=28422825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28422826	.	C	.	.	LowGQX	.	GT	./.
chr1	28422827	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28422828	.	A	.	.	LowGQX	.	GT	./.
chr1	28422829	.	C	.	.	LowGQX	END=28422837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28422838	.	A	.	.	LowGQX	END=28422839	GT	./.
chr1	28422840	.	G	.	.	LowGQX	END=28422843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28422844	.	A	.	.	LowGQX	.	GT	./.
chr1	28422845	.	C	.	.	LowGQX	END=28422846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28422847	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	28422848	.	C	.	.	LowGQX	END=28422850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28422851	.	G	.	.	LowGQX	.	GT	./.
chr1	28422852	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28422853	.	C	.	.	LowGQX	.	GT	./.
chr1	28422854	.	C	.	.	LowGQX	END=28422876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28422877	.	C	.	.	LowGQX	.	GT	./.
chr1	28422878	.	C	.	.	LowGQX	END=28422881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28422882	.	T	.	.	LowGQX	.	GT	./.
chr1	28422883	.	A	.	.	LowGQX	END=28422884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28422885	.	A	.	.	LowGQX	END=28422933	GT	./.
chr1	28476502	.	G	.	.	PASS	END=28476509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	28476510	.	T	.	.	PASS	END=28476523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	28476524	.	C	.	.	PASS	END=28476531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	28476532	.	T	.	.	PASS	END=28476562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	28476563	.	T	.	.	PASS	END=28476594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	28476595	.	C	.	.	PASS	END=28476612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	28476613	.	T	.	.	PASS	END=28476653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	28476654	.	G	.	.	PASS	END=28476674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	28476675	.	A	.	.	PASS	END=28476693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	28476694	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:30:60
chr1	28476695	.	A	.	.	PASS	END=28476726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	28476727	.	T	.	.	PASS	END=28476731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	28476732	.	G	.	.	PASS	END=28476745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	28476746	.	G	.	.	PASS	END=28476770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	28476771	.	G	.	.	PASS	END=28476773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	28476774	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:46:60
chr1	28476775	.	A	.	.	PASS	END=28476779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	28476780	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:63:60
chr1	28476781	.	A	.	.	PASS	END=28476801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	28476802	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:63:60
chr1	28476803	.	A	.	.	PASS	END=28476812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	28476813	.	C	.	.	PASS	END=28476822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	28476823	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:68:60
chr1	28476824	.	C	.	.	PASS	END=28476875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	28476876	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:62:60
chr1	28476877	.	T	.	.	PASS	END=28476902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	28476903	.	G	.	.	PASS	END=28477052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	28477053	.	T	.	.	PASS	END=28477120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	28477121	.	A	.	.	PASS	END=28477158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	28477159	.	G	.	.	PASS	END=28477288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	28477289	.	T	.	.	PASS	END=28477459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	28477460	.	T	.	.	PASS	END=28477501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	28477502	.	A	.	.	PASS	END=28477526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	28477527	.	C	.	.	PASS	END=28477534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	28526972	.	T	.	.	LowGQX	END=28527016	GT	./.
chr1	28527017	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	28527018	.	C	.	.	LowGQX	END=28527071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28527079	.	A	.	.	LowGQX	END=28527105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28527106	.	A	.	.	LowGQX	.	GT	./.
chr1	28527107	.	C	.	.	LowGQX	END=28527167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28527168	.	G	.	.	LowGQX	END=28527178	GT	./.
chr1	28527757	.	G	.	.	LowGQX	END=28527883	GT	./.
chr1	28530246	.	T	.	.	LowGQX	END=28530345	GT	./.
chr1	28531765	.	G	.	.	LowGQX	END=28531851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28531852	.	T	.	.	LowGQX	END=28531864	GT	./.
chr1	28534839	.	T	.	.	LowGQX	END=28534938	GT	./.
chr1	28536481	.	A	.	.	LowGQX	END=28536580	GT	./.
chr1	28537066	.	G	.	.	LowGQX	.	GT	./.
chr1	28537067	.	T	.	.	LowGQX	END=28537084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28537085	.	C	.	.	LowGQX	.	GT	./.
chr1	28537086	.	A	.	.	LowGQX	END=28537093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28537094	.	T	.	.	LowGQX	.	GT	./.
chr1	28537095	.	T	.	.	LowGQX	END=28537099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28537100	.	C	.	.	LowGQX	.	GT	./.
chr1	28537101	.	T	.	.	LowGQX	END=28537110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28537111	.	T	.	.	LowGQX	END=28537112	GT	./.
chr1	28537113	.	A	.	.	LowGQX	END=28537121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28537122	.	T	.	.	LowGQX	.	GT	./.
chr1	28537123	.	T	.	.	LowGQX	END=28537124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28537125	.	G	.	.	LowGQX	.	GT	./.
chr1	28537126	.	T	.	.	LowGQX	END=28537137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28537138	.	A	.	.	LowGQX	.	GT	./.
chr1	28537139	.	A	.	.	LowGQX	END=28537142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28537143	.	G	.	.	LowGQX	.	GT	./.
chr1	28537144	.	G	.	.	LowGQX	END=28537148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28537149	.	C	.	.	LowGQX	END=28537150	GT	./.
chr1	28537151	.	A	.	.	LowGQX	END=28537159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28537160	.	G	.	.	LowGQX	END=28537165	GT	./.
chr1	28541430	.	A	.	.	LowGQX	END=28541529	GT	./.
chr1	28555431	.	A	.	.	LowGQX	END=28555536	GT	./.
chr1	28559421	.	T	.	.	LowGQX	END=28559520	GT	./.
chr1	28562689	.	G	.	.	LowGQX	END=28562788	GT	./.
chr1	28562869	.	C	.	.	LowGQX	END=28563056	GT	./.
chr1	28564241	.	C	.	.	LowGQX	END=28564340	GT	./.
chr1	28564346	.	A	.	.	LowGQX	END=28564491	GT	./.
chr1	28573014	.	G	.	.	LowGQX	END=28573173	GT	./.
chr1	28586354	.	G	.	.	PASS	END=28586445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:80:60
chr1	28586446	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:75:60
chr1	28586447	.	A	.	.	PASS	END=28586462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	28586463	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:60:60
chr1	28586464	.	G	.	.	PASS	END=28586490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	28586491	.	A	.	.	PASS	END=28586495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	28586496	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:36:60
chr1	28586497	.	G	.	.	PASS	END=28586505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	28595677	.	C	.	.	PASS	END=28595766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	28595767	.	T	.	.	PASS	END=28595776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	28598183	.	A	.	.	PASS	END=28598194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	28598195	.	A	.	.	PASS	END=28598226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	28598227	.	C	.	.	PASS	END=28598277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	28598278	.	G	.	.	PASS	END=28598346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	28598347	.	T	.	.	PASS	END=28598378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	28598379	.	C	.	.	PASS	END=28598384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	28598793	.	A	.	.	PASS	END=28598820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	28598821	.	C	.	.	PASS	END=28598961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr1	28598962	.	C	.	.	PASS	END=28598979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	28599090	.	A	.	.	PASS	END=28599120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	28599121	.	G	.	.	PASS	END=28599185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	28599186	.	T	.	.	PASS	END=28599226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	28599227	.	A	.	.	PASS	END=28599243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	28599244	.	A	.	.	PASS	END=28599263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	28599264	.	A	.	.	PASS	END=28599306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	28599867	.	A	.	.	PASS	END=28599919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	28599920	.	C	.	.	PASS	END=28600012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	28600013	.	C	.	.	PASS	END=28600021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	28600549	.	A	.	.	PASS	END=28600589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	28600590	.	G	.	.	PASS	END=28600671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	28601334	.	A	.	.	PASS	END=28601490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:249:99:60
chr1	28601491	.	C	.	.	PASS	END=28601528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	28605606	.	A	.	.	PASS	END=28605630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	28605631	.	A	.	.	PASS	END=28605666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	28605667	.	A	.	.	PASS	END=28605730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	28605731	.	G	.	.	PASS	END=28605754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	28607221	.	C	.	.	PASS	END=28607309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	28607310	.	C	.	.	PASS	END=28607320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	28657102	.	T	.	.	LowGQX	END=28657260	GT	./.
chr1	28660907	.	T	.	.	LowGQX	END=28660912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	28660913	.	T	.	.	LowGQX	END=28661086	GT	./.
chr1	28661087	.	G	.	.	LowGQX	END=28661122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28661123	.	A	.	.	LowGQX	.	GT	./.
chr1	28661124	.	G	.	.	LowGQX	END=28661137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28661138	.	A	.	.	LowGQX	.	GT	./.
chr1	28661139	.	C	.	.	LowGQX	END=28661190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28661191	.	A	.	.	LowGQX	.	GT	./.
chr1	28661192	.	A	.	.	LowGQX	END=28661197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28661198	.	C	.	.	LowGQX	.	GT	./.
chr1	28661199	.	C	.	.	LowGQX	END=28661200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28661201	.	A	.	.	LowGQX	.	GT	./.
chr1	28661202	.	C	.	.	LowGQX	END=28661203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28661204	.	T	.	.	LowGQX	.	GT	./.
chr1	28661205	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28661206	.	T	.	.	LowGQX	.	GT	./.
chr1	28661207	.	T	.	.	LowGQX	END=28661237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28661238	.	G	.	.	LowGQX	END=28661259	GT	./.
chr1	28661260	.	T	.	.	LowGQX	END=28661272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28661273	.	T	.	.	LowGQX	.	GT	./.
chr1	28661274	.	C	.	.	LowGQX	END=28661287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28661288	.	T	.	.	LowGQX	.	GT	./.
chr1	28661289	.	G	.	.	LowGQX	END=28661410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28661411	.	T	.	.	LowGQX	END=28661483	GT	./.
chr1	28696189	.	A	.	.	LowGQX	END=28696399	GT	./.
chr1	28733917	.	T	.	.	LowGQX	END=28734016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28764869	.	T	.	.	LowGQX	END=28764968	GT	./.
chr1	28783775	.	T	.	.	LowGQX	END=28783874	GT	./.
chr1	28785592	.	A	.	.	LowGQX	END=28785771	GT	./.
chr1	28786714	.	T	.	.	LowGQX	END=28786813	GT	./.
chr1	28792194	.	A	.	.	LowGQX	END=28792362	GT	./.
chr1	28792891	.	A	.	.	LowGQX	END=28793226	GT	./.
chr1	28793227	.	G	.	.	LowGQX	END=28793287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	28800064	.	A	.	.	LowGQX	END=28800665	GT	./.
chr1	28802617	.	A	.	.	LowGQX	.	GT	./.
chr1	28802618	.	G	.	.	LowGQX	END=28802663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28802664	.	C	.	.	LowGQX	.	GT	./.
chr1	28802665	.	A	.	.	LowGQX	END=28802691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28802692	.	A	.	.	LowGQX	.	GT	./.
chr1	28802693	.	T	.	.	LowGQX	END=28802699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28802700	.	A	.	.	LowGQX	.	GT	./.
chr1	28802701	.	T	.	.	LowGQX	END=28802713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28802714	.	T	.	.	LowGQX	.	GT	./.
chr1	28802715	.	A	.	.	LowGQX	END=28802719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28802720	.	A	.	.	LowGQX	END=28802805	GT	./.
chr1	28806961	.	A	.	.	LowGQX	END=28807081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28807082	.	G	.	.	LowGQX	END=28807084	GT	./.
chr1	28807085	.	A	.	.	LowGQX	END=28807118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28815660	.	C	.	.	LowGQX	END=28815741	GT	./.
chr1	28815742	.	G	.	.	LowGQX	END=28815759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	28816285	.	G	.	.	LowGQX	END=28816407	GT	./.
chr1	28817444	.	T	.	.	LowGQX	END=28817543	GT	./.
chr1	28818090	.	T	.	.	LowGQX	END=28818301	GT	./.
chr1	28819516	.	C	.	.	LowGQX	END=28819615	GT	./.
chr1	28823004	.	G	.	.	LowGQX	END=28823103	GT	./.
chr1	28832471	.	A	.	.	LowGQX	END=28832596	GT	./.
chr1	28832676	.	C	.	.	LowGQX	END=28832677	GT	./.
chr1	28832678	.	T	.	.	LowGQX	END=28832684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28832685	.	G	.	.	LowGQX	.	GT	./.
chr1	28832686	.	A	.	.	LowGQX	END=28832714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28832715	.	T	.	.	LowGQX	.	GT	./.
chr1	28832716	.	T	.	.	LowGQX	END=28832726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28832727	.	T	.	.	LowGQX	END=28832729	GT	./.
chr1	28832730	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28832731	.	G	.	.	LowGQX	END=28832734	GT	./.
chr1	28832735	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28832736	.	A	.	.	LowGQX	END=28832739	GT	./.
chr1	28832740	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28832741	.	G	.	.	LowGQX	END=28832742	GT	./.
chr1	28832743	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28832744	.	T	.	.	LowGQX	END=28832746	GT	./.
chr1	28832747	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28832748	.	A	.	.	LowGQX	END=28832751	GT	./.
chr1	28832752	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28832753	.	G	.	.	LowGQX	END=28832754	GT	./.
chr1	28832755	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28832756	.	T	.	.	LowGQX	END=28832757	GT	./.
chr1	28832758	.	G	.	.	LowGQX	END=28832759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28832760	.	C	.	.	LowGQX	END=28832767	GT	./.
chr1	28832768	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28832769	.	T	.	.	LowGQX	END=28832774	GT	./.
chr1	28832775	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28832776	.	A	.	.	LowGQX	END=28832781	GT	./.
chr1	28832782	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28832783	.	G	.	.	LowGQX	END=28832788	GT	./.
chr1	28832789	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28832790	.	G	.	.	LowGQX	.	GT	./.
chr1	28832791	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28832792	.	G	.	.	LowGQX	END=28832796	GT	./.
chr1	28832797	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28832798	.	G	.	.	LowGQX	END=28832800	GT	./.
chr1	28832801	.	A	.	.	LowGQX	END=28832802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28832803	.	T	.	.	LowGQX	END=28832839	GT	./.
chr1	28833877	.	T	.	.	LowGQX	END=28834083	GT	./.
chr1	28834607	.	G	.	.	LowGQX	END=28834671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28834672	.	G	.	.	LowGQX	END=28834706	GT	./.
chr1	28835070	.	T	.	.	LowGQX	END=28835211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28835212	.	T	.	.	LowGQX	.	GT	./.
chr1	28835213	.	C	.	.	LowGQX	END=28835227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28835228	.	A	.	.	LowGQX	.	GT	./.
chr1	28835229	.	G	.	.	LowGQX	END=28835233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28835234	.	G	.	.	LowGQX	.	GT	./.
chr1	28835235	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28835236	.	G	.	.	LowGQX	.	GT	./.
chr1	28835237	.	G	.	.	LowGQX	END=28835245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28835246	.	T	.	.	LowGQX	.	GT	./.
chr1	28835247	.	G	.	.	LowGQX	END=28835252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28835253	.	A	.	.	LowGQX	.	GT	./.
chr1	28835254	.	C	.	.	LowGQX	END=28835274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28835342	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28835343	.	A	.	.	LowGQX	.	GT	./.
chr1	28835344	.	G	.	.	LowGQX	END=28835350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28835351	.	C	.	.	LowGQX	.	GT	./.
chr1	28835352	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28835353	.	A	.	.	LowGQX	.	GT	./.
chr1	28835354	.	T	.	.	LowGQX	END=28835357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28835358	.	C	.	.	LowGQX	.	GT	./.
chr1	28835359	.	A	.	.	LowGQX	END=28835365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28835366	.	A	.	.	LowGQX	.	GT	./.
chr1	28835367	.	T	.	.	LowGQX	END=28835394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28835395	.	C	.	.	LowGQX	.	GT	./.
chr1	28835396	.	C	.	.	LowGQX	END=28835408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28835409	.	G	.	.	LowGQX	END=28835485	GT	./.
chr1	28843309	.	A	.	.	LowGQX	END=28843388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	28843389	.	C	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr1	28843390	.	C	.	.	LowGQX	END=28843408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28856362	.	A	.	.	LowGQX	END=28856461	GT	./.
chr1	28857032	.	C	.	.	LowGQX	END=28857131	GT	./.
chr1	28858313	.	A	.	.	LowGQX	END=28858504	GT	./.
chr1	28858681	.	A	.	.	LowGQX	END=28858864	GT	./.
chr1	28859178	.	C	.	.	LowGQX	END=28859189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28859190	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	28859191	.	C	.	.	LowGQX	END=28859277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28861560	.	A	.	.	LowGQX	END=28861660	GT	./.
chr1	28861768	.	A	.	.	LowGQX	END=28861770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28861771	.	A	.	.	LowGQX	.	GT	./.
chr1	28861772	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28861773	.	A	.	.	LowGQX	.	GT	./.
chr1	28861774	.	C	.	.	LowGQX	END=28861775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28861776	.	A	.	.	LowGQX	.	GT	./.
chr1	28861777	.	C	.	.	LowGQX	END=28861778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28861779	.	A	.	.	LowGQX	.	GT	./.
chr1	28861780	.	C	.	.	LowGQX	END=28861784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28861785	.	T	.	.	LowGQX	.	GT	./.
chr1	28861786	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28861787	.	A	.	.	LowGQX	END=28861788	GT	./.
chr1	28861789	.	G	.	.	LowGQX	END=28861792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28861793	.	A	.	.	LowGQX	.	GT	./.
chr1	28861794	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28861795	.	A	.	.	LowGQX	END=28861796	GT	./.
chr1	28861797	.	C	.	.	LowGQX	END=28861799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28861800	.	A	.	.	LowGQX	.	GT	./.
chr1	28861801	.	T	.	.	LowGQX	END=28861803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28861804	.	T	.	.	LowGQX	.	GT	./.
chr1	28861805	.	G	.	.	LowGQX	END=28861809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28861810	.	C	.	.	LowGQX	END=28861811	GT	./.
chr1	28861812	.	A	.	.	LowGQX	END=28861830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28861831	.	A	.	.	LowGQX	END=28861894	GT	./.
chr1	28862081	.	T	.	.	LowGQX	END=28862180	GT	./.
chr1	28862381	.	A	.	.	LowGQX	END=28862540	GT	./.
chr1	28862772	.	A	.	.	LowGQX	END=28862864	GT	./.
chr1	28862865	.	G	.	.	LowGQX	END=28862895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28863257	.	A	.	.	LowGQX	END=28863383	GT	./.
chr1	28863384	.	T	.	.	LowGQX	END=28863413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28864342	.	A	.	.	LowGQX	END=28864521	GT	./.
chr1	28879527	.	C	.	.	LowGQX	END=28879686	GT	./.
chr1	28880150	.	A	.	.	LowGQX	END=28880251	GT	./.
chr1	28887143	.	A	.	.	LowGQX	END=28887246	GT	./.
chr1	28887835	.	T	.	.	LowGQX	END=28887934	GT	./.
chr1	28891213	.	A	.	.	LowGQX	END=28891221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28891222	.	T	.	.	LowGQX	.	GT	./.
chr1	28891223	.	A	.	.	LowGQX	END=28891226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28891227	.	C	.	.	LowGQX	.	GT	./.
chr1	28891228	.	C	.	.	LowGQX	END=28891245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28891246	.	A	.	.	LowGQX	.	GT	./.
chr1	28891247	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28891248	.	C	.	.	LowGQX	.	GT	./.
chr1	28891249	.	C	.	.	LowGQX	END=28891252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28891253	.	A	.	.	LowGQX	.	GT	./.
chr1	28891254	.	C	.	.	LowGQX	END=28891255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28891256	.	T	.	.	LowGQX	.	GT	./.
chr1	28891257	.	G	.	.	LowGQX	END=28891267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28891268	.	T	.	.	LowGQX	.	GT	./.
chr1	28891269	.	G	.	.	LowGQX	END=28891286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28891287	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	28891288	.	A	.	.	LowGQX	END=28891344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28891345	.	A	.	.	LowGQX	.	GT	./.
chr1	28891346	.	A	.	.	LowGQX	END=28891400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28891401	.	C	.	.	LowGQX	.	GT	./.
chr1	28891402	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28893754	.	T	.	.	LowGQX	END=28893927	GT	./.
chr1	28897686	.	A	.	.	LowGQX	END=28897852	GT	./.
chr1	28898346	.	T	.	.	LowGQX	END=28898351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28898352	.	T	.	.	LowGQX	.	GT	./.
chr1	28898353	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28898354	.	A	.	.	LowGQX	.	GT	./.
chr1	28898355	.	C	.	.	LowGQX	END=28898389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28898390	.	A	.	.	LowGQX	.	GT	./.
chr1	28898391	.	G	.	.	LowGQX	END=28898413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28898414	.	T	.	.	LowGQX	.	GT	./.
chr1	28898415	.	A	.	.	LowGQX	END=28898418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28898419	.	G	.	.	LowGQX	.	GT	./.
chr1	28898420	.	T	.	.	LowGQX	END=28898437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28898438	.	T	.	.	LowGQX	END=28898445	GT	./.
chr1	28904010	.	A	.	.	LowGQX	END=28904150	GT	./.
chr1	28905245	.	C	.	.	LowGQX	END=28905310	GT	./.
chr1	28905311	.	A	.	.	LowGQX	END=28905313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28905314	.	T	.	.	LowGQX	END=28905315	GT	./.
chr1	28905316	.	G	.	.	LowGQX	END=28905319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28905320	.	T	.	.	LowGQX	.	GT	./.
chr1	28905321	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28905322	.	A	.	.	LowGQX	.	GT	./.
chr1	28905323	.	T	.	.	LowGQX	END=28905325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28905326	.	T	.	.	LowGQX	.	GT	./.
chr1	28905327	.	G	.	.	LowGQX	END=28905333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28905334	.	T	.	.	LowGQX	.	GT	./.
chr1	28905335	.	C	.	.	LowGQX	END=28905336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28905337	.	T	.	.	LowGQX	.	GT	./.
chr1	28905338	.	T	.	.	LowGQX	END=28905342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28905343	.	A	.	.	LowGQX	END=28905344	GT	./.
chr1	28906276	.	A	.	.	LowGQX	END=28906280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28906281	.	T	.	.	LowGQX	.	GT	./.
chr1	28906282	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28906283	.	T	.	.	LowGQX	.	GT	./.
chr1	28906284	.	G	.	.	LowGQX	END=28906323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28906324	.	G	.	.	LowGQX	.	GT	./.
chr1	28906325	.	G	.	.	LowGQX	END=28906335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28906336	.	T	.	.	LowGQX	.	GT	./.
chr1	28906337	.	A	.	.	LowGQX	END=28906369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28906370	.	A	.	.	LowGQX	END=28906405	GT	./.
chr1	28906893	.	C	.	.	LowGQX	END=28906990	GT	./.
chr1	28906991	.	G	.	.	LowGQX	END=28906996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28906997	.	A	.	.	LowGQX	.	GT	./.
chr1	28906998	.	C	.	.	LowGQX	END=28906999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28907000	.	A	.	.	LowGQX	.	GT	./.
chr1	28907001	.	G	.	.	LowGQX	END=28907024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28907432	.	A	.	.	LowGQX	END=28907565	GT	./.
chr1	28918952	.	G	.	.	LowGQX	END=28919321	GT	./.
chr1	28920205	.	G	.	.	LowGQX	END=28920317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	28920318	.	A	.	.	LowGQX	END=28920631	GT	./.
chr1	28930019	.	C	.	.	LowGQX	END=28930029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28930030	.	A	.	.	LowGQX	.	GT	./.
chr1	28930031	.	T	.	.	LowGQX	END=28930118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	28931845	.	T	.	.	LowGQX	END=28931974	GT	./.
chr1	28939757	.	A	.	.	LowGQX	END=28939875	GT	./.
chr1	28944393	.	G	.	.	LowGQX	END=28944553	GT	./.
chr1	28948364	.	A	.	.	LowGQX	END=28948595	GT	./.
chr1	28995214	.	G	.	.	LowGQX	END=28995373	GT	./.
chr1	29010123	.	A	.	.	LowGQX	END=29010124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29010125	.	A	.	.	LowGQX	.	GT	./.
chr1	29010126	.	T	.	.	LowGQX	END=29010133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29010134	.	G	.	.	LowGQX	.	GT	./.
chr1	29010135	.	C	.	.	LowGQX	END=29010136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29010137	.	G	.	.	LowGQX	END=29010169	GT	./.
chr1	29010170	.	G	.	.	LowGQX	END=29010172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29010173	.	C	.	.	LowGQX	.	GT	./.
chr1	29010174	.	C	.	.	LowGQX	END=29010235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29010236	.	C	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr1	29010237	.	A	.	.	LowGQX	END=29010302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	29016584	.	A	.	.	LowGQX	END=29016700	GT	./.
chr1	29018095	.	A	.	.	LowGQX	END=29018223	GT	./.
chr1	29019452	.	A	.	.	LowGQX	END=29019461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29019462	.	T	.	.	LowGQX	.	GT	./.
chr1	29019463	.	C	.	.	LowGQX	END=29019540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29019541	.	G	.	.	LowGQX	END=29019559	GT	./.
chr1	29023437	.	A	.	.	LowGQX	END=29023446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29023447	.	T	.	.	LowGQX	.	GT	./.
chr1	29023448	.	G	.	.	LowGQX	END=29023460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29023461	.	A	.	.	LowGQX	.	GT	./.
chr1	29023462	.	T	.	.	LowGQX	END=29023465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29023466	.	T	.	.	LowGQX	.	GT	./.
chr1	29023467	.	T	.	.	LowGQX	END=29023471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29023472	.	C	.	.	LowGQX	.	GT	./.
chr1	29023473	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29023474	.	A	.	.	LowGQX	.	GT	./.
chr1	29023475	.	A	.	.	LowGQX	END=29023479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29023480	.	A	.	.	LowGQX	.	GT	./.
chr1	29023481	.	C	.	.	LowGQX	END=29023488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29023489	.	G	.	.	LowGQX	.	GT	./.
chr1	29023490	.	C	.	.	LowGQX	END=29023493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29023494	.	A	.	.	LowGQX	.	GT	./.
chr1	29023495	.	A	.	.	LowGQX	END=29023497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29023498	.	C	.	.	LowGQX	.	GT	./.
chr1	29023499	.	C	.	.	LowGQX	END=29023500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29023501	.	G	.	.	LowGQX	.	GT	./.
chr1	29023502	.	C	.	.	LowGQX	END=29023528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29023529	.	C	.	.	LowGQX	END=29023530	GT	./.
chr1	29023531	.	G	.	.	LowGQX	END=29023533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29023534	.	G	.	.	LowGQX	.	GT	./.
chr1	29023535	.	T	.	.	LowGQX	END=29023538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29023539	.	A	.	.	LowGQX	END=29023540	GT	./.
chr1	29023541	.	A	.	.	LowGQX	END=29023547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29023548	.	G	.	.	LowGQX	.	GT	./.
chr1	29023549	.	T	.	.	LowGQX	END=29023556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29023557	.	C	.	.	LowGQX	.	GT	./.
chr1	29023558	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29023559	.	G	.	.	LowGQX	END=29023598	GT	./.
chr1	29028948	.	A	.	.	LowGQX	END=29029083	GT	./.
chr1	29030702	.	A	.	.	LowGQX	END=29030843	GT	./.
chr1	29037030	.	A	.	.	LowGQX	END=29037156	GT	./.
chr1	29040583	.	A	.	.	LowGQX	END=29041197	GT	./.
chr1	29041198	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29041199	.	C	.	.	LowGQX	.	GT	./.
chr1	29041200	.	T	.	.	LowGQX	END=29041206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29041207	.	T	.	.	LowGQX	.	GT	./.
chr1	29041208	.	G	.	.	LowGQX	END=29041217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29041218	.	T	.	.	LowGQX	.	GT	./.
chr1	29041219	.	T	.	.	LowGQX	END=29041222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29041223	.	G	.	.	LowGQX	.	GT	./.
chr1	29041224	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29041225	.	T	.	.	LowGQX	END=29041226	GT	./.
chr1	29041227	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29041228	.	G	.	.	LowGQX	.	GT	./.
chr1	29041229	.	A	.	.	LowGQX	END=29041230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29041231	.	G	.	.	LowGQX	END=29041232	GT	./.
chr1	29041233	.	A	.	.	LowGQX	END=29041240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29041241	.	C	.	.	LowGQX	.	GT	./.
chr1	29041242	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29041243	.	G	.	.	LowGQX	.	GT	./.
chr1	29041244	.	C	.	.	LowGQX	END=29041252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29041253	.	C	.	.	LowGQX	.	GT	./.
chr1	29041254	.	A	.	.	LowGQX	END=29041257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29041258	.	T	.	.	LowGQX	.	GT	./.
chr1	29041259	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29041260	.	T	.	.	LowGQX	END=29041261	GT	./.
chr1	29041262	.	G	.	.	LowGQX	END=29041263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29041264	.	G	.	.	LowGQX	.	GT	./.
chr1	29041265	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29041266	.	T	.	.	LowGQX	.	GT	./.
chr1	29041267	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29041268	.	G	.	.	LowGQX	.	GT	./.
chr1	29041269	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29041270	.	G	.	.	LowGQX	.	GT	./.
chr1	29041271	.	G	.	.	LowGQX	END=29041275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29041276	.	A	.	.	LowGQX	END=29041277	GT	./.
chr1	29041278	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29041279	.	G	.	.	LowGQX	.	GT	./.
chr1	29041280	.	G	.	.	LowGQX	END=29041287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29063537	.	A	.	.	PASS	END=29063558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	29063559	.	A	C	914.54	PASS	DP=34;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=4.7346;MQ=60;MQ0=0;QD=26.90;SB=-433.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,34:34:72.22:948,72,0:60:72:1.000
chr1	29063560	.	C	.	.	PASS	END=29063585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:57:60
chr1	29063586	.	G	.	.	PASS	END=29063596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:66:60
chr1	29063597	.	T	.	.	PASS	END=29063603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:57:60
chr1	29063604	.	C	.	.	PASS	END=29063608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	29063609	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:30:60
chr1	29063610	.	C	.	.	PASS	END=29063616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:66:60
chr1	29063617	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:54:60
chr1	29063618	.	G	.	.	PASS	END=29063647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	29063648	.	C	.	.	PASS	END=29063668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	29063669	.	C	.	.	PASS	END=29063693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	29063694	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:48:60
chr1	29063695	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:69:60
chr1	29063696	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:51:60
chr1	29064133	.	A	.	.	PASS	END=29064161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:77:60
chr1	29064162	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:74:60
chr1	29064163	.	C	.	.	PASS	END=29064207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	29064208	.	C	.	.	PASS	END=29064221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	29064222	.	A	.	.	PASS	END=29064224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	29064225	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:60:60
chr1	29064226	.	G	.	.	PASS	END=29064229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	29064230	.	G	.	.	PASS	END=29064232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	29064761	.	T	.	.	PASS	END=29064845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	29064846	.	G	.	.	PASS	END=29064860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	29068913	.	A	.	.	PASS	END=29068919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	29068920	.	T	.	.	PASS	END=29068970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	29068971	.	C	.	.	PASS	END=29069054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	29069055	.	G	.	.	PASS	END=29069113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	29069114	.	T	.	.	PASS	END=29069215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	29069216	.	A	.	.	PASS	END=29069236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	29069237	.	A	.	.	PASS	END=29069267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	29069268	.	A	.	.	PASS	END=29069355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	29069356	.	C	.	.	PASS	END=29069476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	29069477	.	C	.	.	PASS	END=29069501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	29069502	.	T	.	.	PASS	END=29069532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	29069533	.	C	.	.	PASS	END=29069603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	29069604	.	T	.	.	PASS	END=29069740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:51
chr1	29069741	.	C	.	.	PASS	END=29069803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:52
chr1	29069804	.	T	.	.	PASS	END=29069935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:55
chr1	29069936	.	C	.	.	PASS	END=29070037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	29070038	.	C	.	.	PASS	END=29070082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	29070083	.	G	.	.	PASS	END=29070176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	29070177	.	A	.	.	PASS	END=29070274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr1	29070275	.	G	.	.	PASS	END=29070330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:59
chr1	29070331	.	A	.	.	PASS	END=29070365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:59
chr1	29070366	.	C	.	.	PASS	END=29070376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:58
chr1	29070377	.	T	.	.	PASS	END=29070397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:58
chr1	29070398	.	A	.	.	PASS	END=29070423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:57
chr1	29070424	.	A	.	.	PASS	END=29070439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:57
chr1	29070440	.	T	.	.	PASS	END=29070482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:57
chr1	29070483	.	A	.	.	PASS	END=29070500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	29095403	.	A	.	.	PASS	END=29095479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:59
chr1	29095480	.	A	.	.	PASS	END=29095492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:58
chr1	29095493	.	G	.	.	PASS	END=29095502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:58
chr1	29138894	.	C	.	.	PASS	END=29138925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	29138926	.	C	.	.	PASS	END=29138963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:90:60
chr1	29138964	.	C	.	.	PASS	END=29138974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	29138975	.	G	T	1063.36	PASS	BaseQRankSum=0.276;DP=81;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=5.7744;MQ=60;MQ0=0;MQRankSum=0.817;QD=13.13;ReadPosRankSum=-2.345;SB=-380.49	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:36,44:81:99:1093,0,846:60:99:0.550
chr1	29138976	.	C	.	.	PASS	END=29139013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	29139014	.	C	.	.	PASS	END=29139059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	29139060	.	C	.	.	PASS	END=29139124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	29185464	.	A	.	.	LowGQX	END=29185468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	29185469	.	C	.	.	LowGQX	END=29185479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	29185480	.	A	.	.	LowGQX	END=29185481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	29185482	.	A	.	.	LowGQX	END=29185484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	29185485	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	29185486	.	C	.	.	LowGQX	END=29185487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	29185488	.	A	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	29185489	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	29185490	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	29185491	.	A	.	.	LowGQX	END=29185492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	29185493	.	C	.	.	LowGQX	END=29185495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	29185496	.	C	.	.	LowGQX	END=29185501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	29185502	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	29185503	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	29185504	.	T	.	.	LowGQX	END=29185505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	29185506	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:1:60
chr1	29185507	.	A	.	.	LowGQX	END=29185508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	29185509	.	C	.	.	LowGQX	END=29185512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	29185513	.	C	.	.	LowGQX	END=29185522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	29185523	.	T	.	.	LowGQX	END=29185525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	29185526	.	G	.	.	LowGQX	END=29185532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	29185533	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	29185534	.	C	.	.	LowGQX	END=29185535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	29185536	.	A	.	.	LowGQX	END=29185537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	29185538	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	29185539	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	29185540	.	C	.	.	LowGQX	END=29185564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	29185565	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:0:60
chr1	29185566	.	C	.	.	PASS	END=29185570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	29185571	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	29185572	.	G	.	.	PASS	END=29185575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	29185576	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	29185577	.	G	.	.	PASS	END=29185578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	29185579	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	29185580	.	G	.	.	PASS	END=29185587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	29185588	.	G	.	.	LowGQX	END=29185589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:60
chr1	29185590	.	G	.	.	PASS	END=29185591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	29185592	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	29185593	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	29185594	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	29185595	.	G	.	.	PASS	END=29185602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	29185603	.	A	.	.	PASS	END=29185615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	29185616	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	29185617	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:2:60
chr1	29185618	.	T	.	.	PASS	END=29185620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	29185621	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	29185622	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	29185623	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	29185624	.	A	.	.	PASS	END=29185662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	29185663	.	T	.	.	PASS	END=29185675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	29185676	.	C	.	.	PASS	END=29185692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr1	29185693	.	A	.	.	PASS	END=29185694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:33:60
chr1	29185695	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:9:60
chr1	29185696	.	C	.	.	PASS	END=29185701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	29185702	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:33:60
chr1	29185703	.	G	.	.	PASS	END=29185725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	29185726	.	C	.	.	PASS	END=29185737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	29185738	.	T	.	.	PASS	END=29185757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	29185758	.	G	.	.	PASS	END=29185782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	29185783	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:3:60
chr1	29185784	.	C	.	.	PASS	END=29185789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	29185790	.	G	.	.	PASS	END=29185814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	29185815	.	G	.	.	PASS	END=29185816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	29185817	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	29189252	.	A	.	.	LowGQX	END=29189253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	29189254	.	A	.	.	LowGQX	.	GT	./.
chr1	29189255	.	C	.	.	LowGQX	END=29189258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	29189259	.	G	.	.	LowGQX	END=29189261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	29189262	.	G	.	.	LowGQX	END=29189284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	29189285	.	C	.	.	LowGQX	END=29189301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	29189302	.	G	.	.	LowGQX	END=29189306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	29189307	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	29189308	.	C	.	.	LowGQX	END=29189343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	29189344	.	T	.	.	LowGQX	END=29189349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	29189350	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	29189351	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	29189352	.	A	.	.	LowGQX	END=29189363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	29189364	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:60
chr1	29189365	.	C	.	.	LowGQX	END=29189381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	29189382	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	29189383	.	T	.	.	LowGQX	END=29189389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	29189390	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	29189391	.	C	.	.	LowGQX	END=29189401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	29189402	.	T	.	.	PASS	END=29189408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	29189409	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:0:60
chr1	29189410	.	T	.	.	PASS	END=29189433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	29189434	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	29189435	.	C	.	.	PASS	END=29189448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	29189449	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	29189450	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	29189451	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	29189452	.	T	.	.	PASS	END=29189453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	29189454	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	29189455	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:2:60
chr1	29189456	.	G	.	.	PASS	END=29189458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	29189459	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	29189460	.	A	.	.	PASS	END=29189462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	29189463	.	G	.	.	PASS	END=29189479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	29189480	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:3:60
chr1	29189481	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:48:60
chr1	29189482	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:15:60
chr1	29189483	.	C	.	.	PASS	END=29189504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	29189505	.	A	.	.	PASS	END=29189514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	29189515	.	T	.	.	PASS	END=29189533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	29189534	.	G	.	.	PASS	END=29189540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	29189541	.	A	.	.	PASS	END=29189545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:57:60
chr1	29189546	.	C	.	.	PASS	END=29189553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	29189554	.	A	.	.	PASS	END=29189555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:54:60
chr1	29189556	.	C	.	.	PASS	END=29189577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	29189578	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr1	29189579	.	C	.	.	PASS	END=29189592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	29189593	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr1	29189594	.	G	.	.	PASS	END=29189596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	29189597	.	C	T	393.03	PASS	BaseQRankSum=-0.275;DP=41;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.9461;MQ=60;MQ0=0;MQRankSum=-1.503;QD=9.59;ReadPosRankSum=0.771;SB=-160.47	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:22,19:41:99:423,0,590:60:99:0.463
chr1	29189598	.	T	.	.	PASS	END=29189611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	29189612	.	C	.	.	PASS	END=29189677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:98:60
chr1	29189678	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:75:60
chr1	29189679	.	A	.	.	PASS	END=29189698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	29189699	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:40:60
chr1	29189700	.	C	.	.	PASS	END=29189727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	29189728	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:57:60
chr1	29189729	.	C	.	.	PASS	END=29189753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	29189754	.	T	.	.	PASS	END=29189760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	29189761	.	C	.	.	PASS	END=29189764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	29189765	.	C	.	.	PASS	END=29189770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	29189771	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	29189772	.	C	.	.	PASS	END=29189779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	29189780	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	29189781	.	G	.	.	PASS	END=29189785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	29189786	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	29189787	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	29189788	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	29189789	.	C	.	.	PASS	END=29189790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	29189791	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	29189792	.	C	.	.	PASS	END=29189797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	29213591	.	G	.	.	LowGQX	END=29213692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29213693	.	T	.	.	LowGQX	.	GT	./.
chr1	29213694	.	C	.	.	LowGQX	END=29213734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29213735	.	C	.	.	LowGQX	END=29213741	GT	./.
chr1	29313899	.	G	.	.	PASS	END=29313900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	29313901	.	T	.	.	PASS	END=29313902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	29313903	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:45:60
chr1	29313904	.	G	.	.	PASS	END=29313916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	29313917	.	C	.	.	PASS	END=29313945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	29313946	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:0:60
chr1	29313947	.	A	.	.	PASS	END=29313951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	29313952	.	G	.	.	PASS	END=29313961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	29313962	.	A	.	.	PASS	END=29313985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	29313986	.	A	.	.	PASS	END=29313996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	29313997	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:49:60
chr1	29313998	.	C	.	.	PASS	END=29314028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr1	29314029	.	A	.	.	PASS	END=29314084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	29314085	.	G	.	.	PASS	END=29314196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	29314197	.	T	.	.	PASS	END=29314326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	29314327	.	C	.	.	PASS	END=29314371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	29314372	.	A	.	.	PASS	END=29314396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	29314397	.	T	.	.	PASS	END=29314412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	29314413	.	C	.	.	PASS	END=29314434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	29314435	.	T	.	.	PASS	END=29314439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	29314440	.	G	.	.	PASS	END=29314441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	29314442	.	T	.	.	PASS	END=29314445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	29314446	.	C	.	.	PASS	END=29314459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	29314460	.	T	.	.	PASS	END=29314467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	29314468	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:60
chr1	29319791	.	T	.	.	PASS	END=29319809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	29319810	.	A	.	.	PASS	END=29319830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	29319831	.	T	.	.	PASS	END=29319834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	29319835	.	T	.	.	PASS	END=29319855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	29319856	.	A	.	.	PASS	END=29319896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	29319897	.	G	.	.	PASS	END=29319986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	29319987	.	G	.	.	PASS	END=29320016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	29320017	.	C	.	.	PASS	END=29320042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	29320043	.	T	.	.	PASS	END=29320055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	29320056	.	T	.	.	PASS	END=29320105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	29323676	.	A	.	.	PASS	END=29323711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	29323712	.	C	.	.	PASS	END=29323757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	29323758	.	G	.	.	PASS	END=29323839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	29323840	.	A	.	.	PASS	END=29323882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	29338326	.	T	.	.	PASS	END=29338344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	29338345	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:46:60
chr1	29338346	.	T	.	.	PASS	END=29338363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	29338364	.	C	.	.	PASS	END=29338447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	29338448	.	C	.	.	PASS	END=29338470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	29342153	.	A	.	.	PASS	END=29342267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:93:60
chr1	29342268	.	A	.	.	PASS	END=29342321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	29342322	.	T	.	.	PASS	END=29342330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	29344685	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	29344686	.	T	.	.	PASS	END=29344692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	29344693	.	T	.	.	PASS	END=29344704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	29344705	.	C	.	.	LowGQX	END=29344707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	29344708	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:4:60
chr1	29344709	.	C	.	.	PASS	END=29344723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	29344724	.	T	.	.	PASS	END=29344738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	29344739	.	T	.	.	PASS	END=29344746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	29344747	.	G	.	.	PASS	END=29344748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:60
chr1	29344749	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:14:60
chr1	29344750	.	T	.	.	PASS	END=29344760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	29344761	.	C	.	.	PASS	END=29344769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	29344770	.	G	.	.	PASS	END=29344783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	29344784	.	G	.	.	PASS	END=29344810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	29344811	.	A	.	.	PASS	END=29344816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	29344817	.	T	.	.	PASS	END=29344936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	29344937	.	A	.	.	PASS	END=29344964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	29344965	.	C	.	.	PASS	END=29344972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	29344973	.	T	.	.	PASS	END=29344991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	29344992	.	G	.	.	PASS	END=29345005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	29356861	.	A	.	.	PASS	END=29356876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	29356877	.	C	.	.	PASS	END=29356925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	29356926	.	C	.	.	PASS	END=29356977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	29356978	.	A	.	.	PASS	END=29357027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	29357028	.	T	.	.	PASS	END=29357050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	29359554	.	T	.	.	PASS	END=29359632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	29359633	.	G	.	.	PASS	END=29359669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	29359670	.	G	.	.	PASS	END=29359795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:246:99:60
chr1	29359796	.	A	.	.	PASS	END=29359808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	29362287	.	A	.	.	PASS	END=29362293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	29362294	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:73:60
chr1	29362295	.	A	.	.	PASS	END=29362345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	29362346	.	G	.	.	PASS	END=29362421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	29362422	.	C	.	.	PASS	END=29362440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:83:60
chr1	29362441	.	A	.	.	PASS	END=29362443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	29362444	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:75:60
chr1	29362445	.	T	.	.	PASS	END=29362485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	29362486	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:55:60
chr1	29365715	.	G	.	.	PASS	END=29365729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	29365730	.	T	.	.	PASS	END=29365747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	29365748	.	T	.	.	PASS	END=29365772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:88:60
chr1	29365773	.	T	.	.	PASS	END=29365858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	29365859	.	A	.	.	PASS	END=29365892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	29365893	.	T	.	.	PASS	END=29365911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	29365912	.	A	.	.	PASS	END=29365920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	29365921	.	C	.	.	PASS	END=29365929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	29365930	.	T	.	.	PASS	END=29365937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	29365938	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:42:60
chr1	29365939	.	G	.	.	PASS	END=29365951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	29365952	.	A	.	.	PASS	END=29365960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	29365961	.	T	.	.	PASS	END=29365989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	29379565	.	T	.	.	PASS	END=29379582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:57:60
chr1	29379583	.	T	.	.	PASS	END=29379600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	29379601	.	C	.	.	PASS	END=29379610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	29379611	.	C	.	.	PASS	END=29379654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	29379655	.	C	.	.	PASS	END=29379681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	29379682	.	A	.	.	PASS	END=29379698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	29379699	.	G	.	.	PASS	END=29379805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	29379806	.	G	.	.	PASS	END=29379827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	29379828	.	T	.	.	PASS	END=29379845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	29379846	.	C	.	.	PASS	END=29379850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	29379851	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:43:60
chr1	29379852	.	A	.	.	PASS	END=29379855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	29379856	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:44:60
chr1	29379857	.	A	.	.	PASS	END=29379887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	29379888	.	C	.	.	PASS	END=29379901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	29379902	.	A	.	.	PASS	END=29379905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	29385050	.	A	.	.	PASS	END=29385112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	29385113	.	C	.	.	PASS	END=29385175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	29385176	.	C	.	.	PASS	END=29385208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	29385314	.	G	.	.	PASS	END=29385413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	29386883	.	A	.	.	PASS	END=29386964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	29386965	.	T	.	.	PASS	END=29387047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	29391443	.	T	.	.	PASS	END=29391457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr1	29391458	.	G	.	.	PASS	END=29391516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	29391517	.	G	.	.	PASS	END=29391569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	29391570	.	C	.	.	PASS	END=29391591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	29391592	.	T	.	.	PASS	END=29391612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	29391613	.	C	.	.	PASS	END=29391614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	29391615	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:60:60
chr1	29391616	.	T	.	.	PASS	END=29391623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	29391624	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:42:60
chr1	29391625	.	C	.	.	PASS	END=29391636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	29391637	.	T	.	.	PASS	END=29391667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	29391668	.	G	.	.	PASS	END=29391678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	29391679	.	T	.	.	PASS	END=29391688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:39:60
chr1	29391689	.	T	.	.	PASS	END=29391691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	29424268	.	C	.	.	PASS	END=29424289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	29424290	.	C	.	.	PASS	END=29424339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	29424340	.	A	.	.	PASS	END=29424406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	29424407	.	T	.	.	PASS	END=29424430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	29424431	.	C	.	.	PASS	END=29424465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	29424466	.	C	.	.	PASS	END=29424477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	29424478	.	A	.	.	PASS	END=29424480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	29424481	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:42:60
chr1	29424482	.	T	.	.	PASS	END=29424498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	29435797	.	T	.	.	PASS	END=29435807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	29435808	.	T	.	.	PASS	END=29435830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	29435831	.	C	.	.	PASS	END=29435855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	29435856	.	C	.	.	PASS	END=29435892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	29435893	.	G	.	.	PASS	END=29435968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	29435969	.	C	.	.	PASS	END=29435990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	29438829	.	T	.	.	PASS	END=29438833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	29438834	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr1	29438835	.	T	.	.	PASS	END=29438842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	29438843	.	T	.	.	PASS	END=29438850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	29438851	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:48:60
chr1	29438852	.	T	.	.	PASS	END=29438858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	29438859	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:48:60
chr1	29438860	.	C	.	.	PASS	END=29438862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr1	29438863	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:40:60
chr1	29438864	.	T	.	.	PASS	END=29438875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	29438876	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:57:60
chr1	29438877	.	C	.	.	PASS	END=29438914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	29438915	.	A	.	.	PASS	END=29438946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	29438947	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:45:60
chr1	29438948	.	T	.	.	PASS	END=29438978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	29438979	.	T	.	.	PASS	END=29438993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	29438994	.	G	.	.	PASS	END=29439001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr1	29442160	.	T	.	.	PASS	END=29442194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	29442195	.	T	.	.	PASS	END=29442217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	29442218	.	T	.	.	PASS	END=29442340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	29442341	.	A	.	.	PASS	END=29442360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	29447415	.	C	.	.	LowGQX	END=29447420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	29447421	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	29447422	.	C	.	.	LowGQX	END=29447475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	29447476	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	29447477	.	G	.	.	LowGQX	END=29447494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	29447495	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	29447496	.	C	.	.	LowGQX	END=29447503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	29447504	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	29447505	.	G	.	.	LowGQX	END=29447506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	29447507	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	29447508	.	C	.	.	LowGQX	END=29447609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29447610	.	A	.	.	LowGQX	.	GT	./.
chr1	29447611	.	C	.	.	LowGQX	END=29447614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29447615	.	G	.	.	LowGQX	.	GT	./.
chr1	29447616	.	C	.	.	LowGQX	END=29447627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29447628	.	C	.	.	LowGQX	END=29448346	GT	./.
chr1	29474580	.	C	.	.	LowGQX	END=29474679	GT	./.
chr1	29474920	.	A	.	.	LowGQX	END=29475729	GT	./.
chr1	29475730	.	G	.	.	LowGQX	END=29475740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	29476610	.	C	.	.	LowGQX	END=29476709	GT	./.
chr1	29481206	.	A	.	.	LowGQX	END=29481323	GT	./.
chr1	29481324	.	T	.	.	LowGQX	END=29481331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29481332	.	C	.	.	LowGQX	.	GT	./.
chr1	29481333	.	A	.	.	LowGQX	END=29481337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29481338	.	A	.	.	LowGQX	.	GT	./.
chr1	29481339	.	A	.	.	LowGQX	END=29481345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29481346	.	A	.	.	LowGQX	.	GT	./.
chr1	29481347	.	A	.	.	LowGQX	END=29481354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29481355	.	A	.	.	LowGQX	.	GT	./.
chr1	29481356	.	C	.	.	LowGQX	END=29481358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29481359	.	C	.	.	LowGQX	.	GT	./.
chr1	29481360	.	T	.	.	LowGQX	END=29481368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29481369	.	G	.	.	LowGQX	.	GT	./.
chr1	29481370	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29481371	.	G	.	.	LowGQX	.	GT	./.
chr1	29481372	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29481373	.	C	.	.	LowGQX	.	GT	./.
chr1	29481374	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29481375	.	C	.	.	LowGQX	.	GT	./.
chr1	29481376	.	T	.	.	LowGQX	END=29481379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29481380	.	G	.	.	LowGQX	.	GT	./.
chr1	29481381	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29481382	.	G	.	.	LowGQX	.	GT	./.
chr1	29481383	.	C	.	.	LowGQX	END=29481387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29481388	.	G	.	.	LowGQX	.	GT	./.
chr1	29481389	.	C	.	.	LowGQX	END=29481393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29481394	.	G	.	.	LowGQX	END=29481395	GT	./.
chr1	29481396	.	C	.	.	LowGQX	END=29481399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29481400	.	T	.	.	LowGQX	.	GT	./.
chr1	29481401	.	C	.	.	LowGQX	END=29481405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29481406	.	G	.	.	LowGQX	.	GT	./.
chr1	29481407	.	C	.	.	LowGQX	END=29481415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29481416	.	T	.	.	LowGQX	END=29481417	GT	./.
chr1	29481418	.	T	.	.	LowGQX	END=29481422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29481423	.	C	.	.	LowGQX	.	GT	./.
chr1	29481424	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29485884	.	A	.	.	LowGQX	END=29485931	GT	./.
chr1	29485932	.	A	.	.	LowGQX	END=29486000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29486885	.	A	.	.	LowGQX	END=29487031	GT	./.
chr1	29508156	.	A	.	.	LowGQX	END=29508266	GT	./.
chr1	29520511	.	T	.	.	LowGQX	END=29520693	GT	./.
chr1	29522440	.	G	.	.	LowGQX	END=29522539	GT	./.
chr1	29522584	.	A	.	.	LowGQX	END=29522772	GT	./.
chr1	29527014	.	C	.	.	LowGQX	END=29527113	GT	./.
chr1	29527885	.	C	.	.	LowGQX	END=29528030	GT	./.
chr1	29528453	.	A	.	.	LowGQX	END=29528465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	29528466	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	29528467	.	T	.	.	LowGQX	END=29528537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29528538	.	T	.	.	LowGQX	END=29528559	GT	./.
chr1	29529641	.	A	.	.	LowGQX	END=29529652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29529653	.	C	.	.	LowGQX	.	GT	./.
chr1	29529654	.	C	.	.	LowGQX	END=29529662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29529663	.	G	.	.	LowGQX	END=29529747	GT	./.
chr1	29533272	.	A	.	.	LowGQX	END=29533363	GT	./.
chr1	29533364	.	T	.	.	LowGQX	END=29533365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29533366	.	G	.	.	LowGQX	END=29533367	GT	./.
chr1	29533368	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29533369	.	A	.	.	LowGQX	.	GT	./.
chr1	29533370	.	C	.	.	LowGQX	END=29533372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29533373	.	G	.	.	LowGQX	END=29533374	GT	./.
chr1	29533375	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29533376	.	T	.	.	LowGQX	.	GT	./.
chr1	29533377	.	C	.	.	LowGQX	END=29533379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29533380	.	T	.	.	LowGQX	.	GT	./.
chr1	29533381	.	G	.	.	LowGQX	END=29533382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29533383	.	T	.	.	LowGQX	END=29533384	GT	./.
chr1	29533385	.	C	.	.	LowGQX	END=29533386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29533387	.	T	.	.	LowGQX	.	GT	./.
chr1	29533388	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29533389	.	G	.	.	LowGQX	.	GT	./.
chr1	29533390	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29533391	.	T	.	.	LowGQX	.	GT	./.
chr1	29533392	.	G	.	.	LowGQX	END=29533393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29533394	.	A	.	.	LowGQX	.	GT	./.
chr1	29533395	.	C	.	.	LowGQX	END=29533397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29533398	.	A	.	.	LowGQX	.	GT	./.
chr1	29533399	.	G	.	.	LowGQX	END=29533419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29542515	.	A	.	.	LowGQX	END=29542650	GT	./.
chr1	29543098	.	A	.	.	LowGQX	END=29543099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29543100	.	C	.	.	LowGQX	END=29543102	GT	./.
chr1	29543103	.	G	.	.	LowGQX	END=29543107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29543108	.	A	.	.	LowGQX	END=29543109	GT	./.
chr1	29543110	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29543111	.	T	.	.	LowGQX	.	GT	./.
chr1	29543112	.	T	.	.	LowGQX	END=29543115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29543116	.	G	.	.	LowGQX	.	GT	./.
chr1	29543117	.	T	.	.	LowGQX	END=29543119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29543120	.	G	.	.	LowGQX	END=29543146	GT	./.
chr1	29543147	.	T	.	.	LowGQX	END=29543150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29543151	.	C	.	.	LowGQX	.	GT	./.
chr1	29543152	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29543153	.	C	.	.	LowGQX	END=29543156	GT	./.
chr1	29543157	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29543158	.	A	.	.	LowGQX	.	GT	./.
chr1	29543159	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29543160	.	C	.	.	LowGQX	.	GT	./.
chr1	29543161	.	T	.	.	LowGQX	END=29543165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29543166	.	C	.	.	LowGQX	.	GT	./.
chr1	29543167	.	T	.	.	LowGQX	END=29543168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29543169	.	T	.	.	LowGQX	.	GT	./.
chr1	29543170	.	C	.	.	LowGQX	END=29543171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29543172	.	C	.	.	LowGQX	END=29543173	GT	./.
chr1	29543174	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29543175	.	C	.	.	LowGQX	.	GT	./.
chr1	29543176	.	A	.	.	LowGQX	END=29543177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29543178	.	C	.	.	LowGQX	.	GT	./.
chr1	29543179	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29543180	.	A	.	.	LowGQX	.	GT	./.
chr1	29543181	.	G	.	.	LowGQX	END=29543182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29543183	.	T	.	.	LowGQX	END=29543185	GT	./.
chr1	29543186	.	A	.	.	LowGQX	END=29543187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29543188	.	G	.	.	LowGQX	END=29543189	GT	./.
chr1	29543190	.	T	.	.	LowGQX	END=29543198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29543199	.	T	.	.	LowGQX	.	GT	./.
chr1	29557221	.	C	.	.	LowGQX	END=29557420	GT	./.
chr1	29563084	.	C	.	.	LowGQX	END=29563243	GT	./.
chr1	29581785	.	A	.	.	LowGQX	END=29581863	GT	./.
chr1	29581864	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29581865	.	G	.	.	LowGQX	.	GT	./.
chr1	29581866	.	G	.	.	LowGQX	END=29581879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29581880	.	T	.	.	LowGQX	.	GT	./.
chr1	29581881	.	C	.	.	LowGQX	END=29581901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29581902	.	T	.	.	LowGQX	.	GT	./.
chr1	29581903	.	G	.	.	LowGQX	END=29581920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585015	.	A	.	.	LowGQX	END=29585029	GT	./.
chr1	29585030	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585031	.	G	.	.	LowGQX	.	GT	./.
chr1	29585032	.	T	.	.	LowGQX	END=29585033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585034	.	A	.	.	LowGQX	.	GT	./.
chr1	29585035	.	A	.	.	LowGQX	END=29585036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585037	.	A	.	.	LowGQX	.	GT	./.
chr1	29585038	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585039	.	T	.	.	LowGQX	.	GT	./.
chr1	29585040	.	T	.	.	LowGQX	END=29585041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585042	.	C	.	.	LowGQX	.	GT	./.
chr1	29585043	.	C	.	.	LowGQX	END=29585045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585046	.	C	.	.	LowGQX	END=29585048	GT	./.
chr1	29585049	.	G	.	.	LowGQX	END=29585051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585052	.	C	.	.	LowGQX	.	GT	./.
chr1	29585053	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585054	.	A	.	.	LowGQX	.	GT	./.
chr1	29585055	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585056	.	G	.	.	LowGQX	.	GT	./.
chr1	29585057	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585058	.	C	.	.	LowGQX	.	GT	./.
chr1	29585059	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585060	.	G	.	.	LowGQX	.	GT	./.
chr1	29585061	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585062	.	G	.	.	LowGQX	.	GT	./.
chr1	29585063	.	A	.	.	LowGQX	END=29585065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585066	.	C	.	.	LowGQX	.	GT	./.
chr1	29585067	.	C	.	.	LowGQX	END=29585074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585075	.	C	.	.	LowGQX	.	GT	./.
chr1	29585076	.	T	.	.	LowGQX	END=29585081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585082	.	A	.	.	LowGQX	END=29585083	GT	./.
chr1	29585084	.	C	.	.	LowGQX	END=29585086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585087	.	G	.	.	LowGQX	.	GT	./.
chr1	29585088	.	A	.	.	LowGQX	END=29585093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585094	.	A	.	.	LowGQX	.	GT	./.
chr1	29585095	.	A	.	.	LowGQX	END=29585096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585097	.	G	.	.	LowGQX	.	GT	./.
chr1	29585098	.	A	.	.	LowGQX	END=29585099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585100	.	A	.	.	LowGQX	END=29585101	GT	./.
chr1	29585102	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585103	.	C	.	.	LowGQX	END=29585104	GT	./.
chr1	29585105	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585106	.	T	.	.	LowGQX	END=29585108	GT	./.
chr1	29585109	.	G	.	.	LowGQX	END=29585114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585115	.	T	.	.	LowGQX	.	GT	./.
chr1	29585116	.	T	.	.	LowGQX	END=29585117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585118	.	A	.	.	LowGQX	END=29585119	GT	./.
chr1	29585120	.	C	.	.	LowGQX	END=29585123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585124	.	T	.	.	LowGQX	.	GT	./.
chr1	29585125	.	T	.	.	LowGQX	END=29585129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585130	.	T	.	.	LowGQX	END=29585131	GT	./.
chr1	29585132	.	C	.	.	LowGQX	END=29585133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585134	.	G	.	.	LowGQX	.	GT	./.
chr1	29585135	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585136	.	C	.	.	LowGQX	.	GT	./.
chr1	29585137	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585138	.	G	.	.	LowGQX	.	GT	./.
chr1	29585139	.	G	.	.	LowGQX	END=29585143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585144	.	G	.	.	LowGQX	.	GT	./.
chr1	29585145	.	C	.	.	LowGQX	END=29585152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585153	.	G	.	.	LowGQX	.	GT	./.
chr1	29585154	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585155	.	G	.	.	LowGQX	END=29585156	GT	./.
chr1	29585157	.	A	.	.	LowGQX	END=29585159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585160	.	C	.	.	LowGQX	.	GT	./.
chr1	29585161	.	T	.	.	LowGQX	END=29585163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585164	.	G	.	.	LowGQX	.	GT	./.
chr1	29585165	.	C	.	.	LowGQX	END=29585178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585179	.	T	.	.	LowGQX	END=29585290	GT	./.
chr1	29585764	.	C	.	.	LowGQX	END=29585844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	29585845	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	29585846	.	A	.	.	LowGQX	END=29585855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29585856	.	T	.	.	LowGQX	END=29585863	GT	./.
chr1	29585959	.	A	.	.	LowGQX	END=29586048	GT	./.
chr1	29586049	.	G	.	.	LowGQX	END=29586062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29586063	.	G	.	.	LowGQX	.	GT	./.
chr1	29586064	.	C	.	.	LowGQX	END=29586077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29586078	.	T	.	.	LowGQX	.	GT	./.
chr1	29586360	.	C	.	.	LowGQX	END=29586558	GT	./.
chr1	29587120	.	A	.	.	LowGQX	END=29587397	GT	./.
chr1	29587398	.	G	.	.	LowGQX	END=29587399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29587400	.	C	.	.	LowGQX	.	GT	./.
chr1	29587401	.	G	.	.	LowGQX	END=29587407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29587408	.	A	.	.	LowGQX	.	GT	./.
chr1	29587409	.	T	.	.	LowGQX	END=29587414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29587415	.	G	.	.	LowGQX	.	GT	./.
chr1	29587416	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29587417	.	T	.	.	LowGQX	.	GT	./.
chr1	29601958	.	A	.	.	LowGQX	END=29602270	GT	./.
chr1	29605522	.	A	.	.	LowGQX	.	GT	./.
chr1	29605523	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29605524	.	T	.	.	LowGQX	.	GT	./.
chr1	29605525	.	G	.	.	LowGQX	END=29605526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29605527	.	C	.	.	LowGQX	END=29605528	GT	./.
chr1	29605529	.	A	.	.	LowGQX	END=29605530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29605531	.	T	.	.	LowGQX	.	GT	./.
chr1	29605532	.	G	.	.	LowGQX	END=29605533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29605534	.	G	.	.	LowGQX	.	GT	./.
chr1	29605535	.	A	.	.	LowGQX	END=29605537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29605538	.	G	.	.	LowGQX	.	GT	./.
chr1	29605539	.	C	.	.	LowGQX	END=29605541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29605542	.	C	.	.	LowGQX	.	GT	./.
chr1	29605543	.	C	.	.	LowGQX	END=29605547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29605548	.	C	.	.	LowGQX	.	GT	./.
chr1	29605549	.	C	.	.	LowGQX	END=29605550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29605551	.	T	.	.	LowGQX	.	GT	./.
chr1	29605552	.	G	.	.	LowGQX	END=29605555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29605556	.	T	.	.	LowGQX	END=29605608	GT	./.
chr1	29605609	.	C	.	.	LowGQX	END=29605635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29605966	.	A	.	.	LowGQX	END=29606171	GT	./.
chr1	29606549	.	A	.	.	LowGQX	END=29606655	GT	./.
chr1	29609186	.	A	.	.	LowGQX	END=29609196	GT	./.
chr1	29609197	.	G	.	.	LowGQX	END=29609345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	29609346	.	A	.	.	LowGQX	END=29609463	GT	./.
chr1	29610421	.	G	.	.	LowGQX	END=29610520	GT	./.
chr1	29611201	.	C	.	.	LowGQX	END=29611383	GT	./.
chr1	29616160	.	C	.	.	LowGQX	END=29616259	GT	./.
chr1	29618379	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618380	.	G	.	.	LowGQX	END=29618382	GT	./.
chr1	29618383	.	A	.	.	LowGQX	END=29618387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618388	.	G	.	.	LowGQX	.	GT	./.
chr1	29618389	.	T	.	.	LowGQX	END=29618391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618392	.	A	.	.	LowGQX	.	GT	./.
chr1	29618393	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618394	.	A	.	.	LowGQX	.	GT	./.
chr1	29618395	.	T	.	.	LowGQX	END=29618396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618397	.	A	.	.	LowGQX	END=29618398	GT	./.
chr1	29618399	.	C	.	.	LowGQX	END=29618400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618401	.	A	.	.	LowGQX	.	GT	./.
chr1	29618402	.	G	.	.	LowGQX	END=29618405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618406	.	A	.	.	LowGQX	.	GT	./.
chr1	29618407	.	C	.	.	LowGQX	END=29618408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618409	.	G	.	.	LowGQX	END=29618410	GT	./.
chr1	29618411	.	C	.	.	LowGQX	END=29618425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	29618426	.	G	.	.	LowGQX	.	GT	./.
chr1	29618427	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	29618428	.	A	.	.	LowGQX	.	GT	./.
chr1	29618429	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	29618430	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	29618431	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	29618432	.	A	.	.	LowGQX	.	GT	./.
chr1	29618433	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	29618434	.	A	.	.	LowGQX	.	GT	./.
chr1	29618435	.	C	.	.	LowGQX	END=29618446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618447	.	C	.	.	LowGQX	.	GT	./.
chr1	29618448	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618449	.	T	.	.	LowGQX	.	GT	./.
chr1	29618450	.	G	.	.	LowGQX	END=29618452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618453	.	C	.	.	LowGQX	.	GT	./.
chr1	29618454	.	C	.	.	LowGQX	END=29618465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618466	.	G	.	.	LowGQX	.	GT	./.
chr1	29618467	.	A	.	.	LowGQX	END=29618470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618471	.	G	.	.	LowGQX	.	GT	./.
chr1	29618472	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618473	.	G	.	.	LowGQX	.	GT	./.
chr1	29618474	.	C	.	.	LowGQX	END=29618487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618488	.	A	.	.	LowGQX	.	GT	./.
chr1	29618489	.	C	.	.	LowGQX	END=29618494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618495	.	G	.	.	LowGQX	.	GT	./.
chr1	29618496	.	C	.	.	LowGQX	END=29618504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618505	.	T	.	.	LowGQX	.	GT	./.
chr1	29618506	.	C	.	.	LowGQX	END=29618517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618518	.	C	.	.	LowGQX	.	GT	./.
chr1	29618519	.	C	.	.	LowGQX	END=29618528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618529	.	A	.	.	LowGQX	END=29618530	GT	./.
chr1	29618531	.	C	.	.	LowGQX	END=29618534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29618535	.	C	.	.	LowGQX	.	GT	./.
chr1	29618536	.	G	.	.	LowGQX	END=29618540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29630365	.	A	.	.	LowGQX	END=29630559	GT	./.
chr1	29631274	.	T	.	.	LowGQX	END=29631373	GT	./.
chr1	29631853	.	T	.	.	LowGQX	END=29631892	GT	./.
chr1	29631893	.	A	.	.	LowGQX	END=29631952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29632047	.	G	.	.	LowGQX	END=29632056	GT	./.
chr1	29632057	.	T	.	.	LowGQX	END=29632064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29632065	.	T	.	.	LowGQX	.	GT	./.
chr1	29632066	.	C	.	.	LowGQX	END=29632067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29632068	.	C	.	.	LowGQX	.	GT	./.
chr1	29632069	.	T	.	.	LowGQX	END=29632146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29633600	.	T	.	.	LowGQX	END=29633610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	29633611	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	29633612	.	T	.	.	LowGQX	END=29633624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	29633625	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	29633626	.	A	.	.	LowGQX	END=29633628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29633629	.	G	.	.	LowGQX	END=29633630	GT	./.
chr1	29633631	.	A	.	.	LowGQX	END=29633632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29633633	.	T	.	.	LowGQX	.	GT	./.
chr1	29633634	.	C	.	.	LowGQX	END=29633636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29633637	.	T	.	.	LowGQX	.	GT	./.
chr1	29633638	.	A	.	.	LowGQX	END=29633643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29633644	.	C	.	.	LowGQX	.	GT	./.
chr1	29633645	.	G	.	.	LowGQX	END=29633651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29633652	.	C	.	.	LowGQX	END=29633653	GT	./.
chr1	29633654	.	G	.	.	LowGQX	END=29633655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29633656	.	G	.	.	LowGQX	END=29633657	GT	./.
chr1	29633658	.	A	.	.	LowGQX	END=29633661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29633662	.	A	.	.	LowGQX	END=29633663	GT	./.
chr1	29633664	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29633665	.	A	.	.	LowGQX	END=29633666	GT	./.
chr1	29633667	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29633668	.	T	.	.	LowGQX	.	GT	./.
chr1	29633669	.	C	.	.	LowGQX	END=29633670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29633671	.	C	.	.	LowGQX	.	GT	./.
chr1	29633672	.	T	.	.	LowGQX	END=29633674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29633675	.	C	.	.	LowGQX	.	GT	./.
chr1	29633676	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29633677	.	T	.	.	LowGQX	END=29633678	GT	./.
chr1	29633679	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29633680	.	T	.	.	LowGQX	END=29633682	GT	./.
chr1	29633683	.	T	.	.	LowGQX	END=29633695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29633696	.	C	.	.	LowGQX	.	GT	./.
chr1	29633697	.	C	.	.	LowGQX	END=29633699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29637225	.	G	.	.	LowGQX	END=29637324	GT	./.
chr1	29637966	.	A	.	.	LowGQX	END=29638067	GT	./.
chr1	29638153	.	A	.	.	LowGQX	END=29638273	GT	./.
chr1	29639062	.	A	.	.	LowGQX	END=29639220	GT	./.
chr1	29641882	.	A	.	.	LowGQX	END=29642021	GT	./.
chr1	29642512	.	A	.	.	LowGQX	END=29642665	GT	./.
chr1	29644258	.	A	.	.	LowGQX	END=29644457	GT	./.
chr1	29647195	.	A	.	.	LowGQX	END=29647220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29647221	.	A	.	.	LowGQX	.	GT	./.
chr1	29647222	.	T	.	.	LowGQX	END=29647227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29647228	.	C	.	.	LowGQX	.	GT	./.
chr1	29647229	.	C	.	.	LowGQX	END=29647232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29647233	.	C	.	.	LowGQX	END=29647234	GT	./.
chr1	29647235	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29647236	.	C	.	.	LowGQX	.	GT	./.
chr1	29647237	.	C	.	.	LowGQX	END=29647242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29647243	.	A	.	.	LowGQX	END=29647244	GT	./.
chr1	29647245	.	A	.	.	LowGQX	END=29647246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29647247	.	C	.	.	LowGQX	END=29647249	GT	./.
chr1	29647250	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29647251	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	29647252	.	C	.	.	LowGQX	END=29647330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	29647331	.	C	.	.	LowGQX	END=29647339	GT	./.
chr1	29649881	.	A	.	.	LowGQX	END=29650010	GT	./.
chr1	29650141	.	A	.	.	LowGQX	END=29650281	GT	./.
chr1	29650282	.	G	.	.	LowGQX	END=29650302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	29651701	.	A	.	.	LowGQX	END=29651840	GT	./.
chr1	29652033	.	C	.	.	LowGQX	END=29652192	GT	./.
chr1	31186404	.	G	.	.	LowGQX	END=31186489	GT	./.
chr1	31186490	.	G	.	.	LowGQX	END=31186503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31187085	.	A	.	.	LowGQX	END=31187184	GT	./.
chr1	31188002	.	A	.	.	LowGQX	END=31188077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31188078	.	T	.	.	LowGQX	END=31188158	GT	./.
chr1	31188754	.	A	.	.	LowGQX	END=31188888	GT	./.
chr1	31188889	.	G	.	.	LowGQX	END=31188900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31188901	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	31188902	.	G	.	.	LowGQX	END=31188954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31188955	.	C	.	.	LowGQX	.	GT	./.
chr1	31188956	.	T	.	.	LowGQX	END=31189050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31189051	.	C	.	.	LowGQX	.	GT	./.
chr1	31189052	.	G	.	.	LowGQX	END=31189117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31189118	.	C	.	.	LowGQX	END=31189174	GT	./.
chr1	31189635	.	A	.	.	LowGQX	END=31189764	GT	./.
chr1	31191580	.	A	.	.	LowGQX	END=31191806	GT	./.
chr1	31194250	.	A	.	.	LowGQX	END=31194595	GT	./.
chr1	31194596	.	G	.	.	LowGQX	END=31194600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31196242	.	C	.	.	LowGQX	END=31196452	GT	./.
chr1	31206383	.	T	.	.	LowGQX	END=31206526	GT	./.
chr1	31206610	.	A	.	.	LowGQX	END=31206684	GT	./.
chr1	31206685	.	G	.	.	LowGQX	END=31206795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31206796	.	T	.	.	LowGQX	END=31206822	GT	./.
chr1	31208017	.	C	.	.	LowGQX	END=31208116	GT	./.
chr1	31210449	.	A	.	.	LowGQX	END=31210467	GT	./.
chr1	31210468	.	T	.	.	LowGQX	END=31210548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31211785	.	A	.	.	LowGQX	END=31211823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31211824	.	A	.	.	LowGQX	.	GT	./.
chr1	31211825	.	C	.	.	LowGQX	END=31211884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31211885	.	T	.	.	LowGQX	.	GT	./.
chr1	31211886	.	C	.	.	LowGQX	END=31211894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31211895	.	G	.	.	LowGQX	.	GT	./.
chr1	31211896	.	A	.	.	LowGQX	END=31211900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31211901	.	G	.	.	LowGQX	.	GT	./.
chr1	31211902	.	G	.	.	LowGQX	END=31211911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31212614	.	T	.	.	LowGQX	END=31212684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31212685	.	A	.	.	LowGQX	END=31212786	GT	./.
chr1	31214476	.	T	.	.	LowGQX	END=31214575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31215300	.	T	.	.	LowGQX	END=31215359	GT	./.
chr1	31215360	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31215361	.	T	.	.	LowGQX	.	GT	./.
chr1	31215362	.	A	.	.	LowGQX	END=31215364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31215365	.	G	.	.	LowGQX	.	GT	./.
chr1	31215366	.	A	.	.	LowGQX	END=31215384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31215385	.	G	.	.	LowGQX	.	GT	./.
chr1	31215386	.	A	.	.	LowGQX	END=31215399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31230440	.	G	.	.	LowGQX	END=31230599	GT	./.
chr1	31346056	.	C	.	.	PASS	END=31346068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	31346069	.	A	.	.	PASS	END=31346110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	31346111	.	G	.	.	PASS	END=31346198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	31346199	.	G	A	1436.38	PASS	BaseQRankSum=1.671;DP=118;Dels=0.00;FS=12.951;HRun=0;HaplotypeScore=13.3595;MQ=60;MQ0=0;MQRankSum=-0.766;QD=12.17;ReadPosRankSum=1.300;SB=-132.79	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:59,58:118:99:1466,0,1307:60:99:0.496
chr1	31346200	.	C	.	.	PASS	END=31346221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	31346222	.	C	.	.	PASS	END=31346226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	31347142	.	A	.	.	PASS	END=31347167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	31347168	.	G	.	.	PASS	END=31347362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	31347363	.	C	.	.	PASS	END=31347398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	31347399	.	C	T	2266.88	PASS	BaseQRankSum=0.403;DP=195;Dels=0.00;FS=13.583;HRun=1;HaplotypeScore=28.5550;MQ=60;MQ0=0;MQRankSum=-0.061;QD=11.63;ReadPosRankSum=-0.491;SB=-1363.61	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:95,98:195:99:2297,0,2305:60:99:0.508
chr1	31347400	.	C	.	.	PASS	END=31347437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	31349397	.	A	.	.	PASS	END=31349409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	31349410	.	C	.	.	PASS	END=31349437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	31349438	.	G	.	.	PASS	END=31349488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	31349489	.	G	.	.	PASS	END=31349579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	31349580	.	G	.	.	PASS	END=31349612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	31349613	.	A	.	.	PASS	END=31349641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	31349642	.	C	T	1651.06	PASS	BaseQRankSum=2.020;DP=118;Dels=0.00;FS=2.547;HRun=1;HaplotypeScore=19.9908;MQ=60;MQ0=0;MQRankSum=0.940;QD=13.99;ReadPosRankSum=0.532;SB=-751.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:59,58:118:99:1681,0,1715:60:99:0.496
chr1	31349643	.	C	.	.	PASS	END=31349646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	31349647	.	C	T	4027.27	PASS	BaseQRankSum=0.311;DP=118;Dels=0.00;FS=4.354;HRun=0;HaplotypeScore=22.7788;MQ=60;MQ0=0;MQRankSum=-0.459;QD=34.13;ReadPosRankSum=0.311;SB=-1454.85	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,116:118:99:4027,280,0:60:99:0.991
chr1	31349648	.	G	.	.	PASS	END=31349704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	31349705	.	G	.	.	PASS	END=31349709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	31349710	.	T	.	261.74	PASS	DP=138;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:98:138:99:60:99
chr1	31349711	.	G	.	.	PASS	END=31349771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	31349772	.	G	.	.	PASS	END=31349883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	31349884	.	G	.	.	PASS	END=31349932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	31349933	.	C	.	.	PASS	END=31349965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	31349966	.	T	.	.	PASS	END=31349983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	31349984	.	T	.	.	PASS	END=31350013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:81:60
chr1	31350014	.	T	.	.	PASS	END=31350021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:84:60
chr1	31350022	.	T	G	87.51	LowQD;SB	BaseQRankSum=-1.502;DP=57;Dels=0.00;FS=26.104;HRun=5;HaplotypeScore=29.5020;MQ=60;MQ0=0;MQRankSum=0.403;QD=1.54;ReadPosRankSum=-2.120;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:39,18:57:99:118,0,752:60:88:0.316
chr1	31350023	.	G	.	.	PASS	END=31350063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr1	31350064	.	G	.	.	PASS	END=31350072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	31350073	.	A	.	.	PASS	END=31350075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	31350076	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:45:60
chr1	31350077	.	C	.	.	PASS	END=31350087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	31350088	.	T	.	.	PASS	END=31350090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	31350091	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:33:60
chr1	31350092	.	C	.	.	PASS	END=31350094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	31351468	.	A	.	.	PASS	END=31351512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	31351513	.	G	A	4634.77	PASS	BaseQRankSum=0.989;DP=180;Dels=0.00;FS=2.889;HRun=0;HaplotypeScore=18.1464;MQ=60;MQ0=0;MQRankSum=0.116;QD=25.75;ReadPosRankSum=-0.935;SB=-2468.18	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,178:180:99:4635,283,0:60:99:0.989
chr1	31351514	.	G	.	.	PASS	END=31351586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	31351587	.	C	.	.	PASS	END=31351589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	31381264	.	C	.	.	LowGQX	END=31381433	GT	./.
chr1	31406056	.	C	.	.	LowGQX	.	GT	./.
chr1	31406057	.	C	.	.	LowGQX	END=31406069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31406070	.	A	.	.	LowGQX	END=31406235	GT	./.
chr1	31408529	.	G	.	.	LowGQX	END=31408595	GT	./.
chr1	31408596	.	G	.	.	LowGQX;LowMQ	END=31408628	GT	./.
chr1	31409488	.	A	.	.	LowGQX	END=31409684	GT	./.
chr1	31413996	.	A	.	.	LowGQX	END=31414021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31414022	.	A	.	.	LowGQX	.	GT	./.
chr1	31414023	.	C	.	.	LowGQX	END=31414094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31414095	.	G	.	.	LowGQX	END=31414121	GT	./.
chr1	31414770	.	C	.	.	LowGQX	END=31414772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31414773	.	A	.	.	LowGQX	END=31414835	GT	./.
chr1	31414836	.	C	.	.	LowGQX	END=31414839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31414840	.	A	.	.	LowGQX	.	GT	./.
chr1	31414841	.	C	.	.	LowGQX	END=31414899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31414900	.	T	.	.	LowGQX	.	GT	./.
chr1	31414901	.	C	.	.	LowGQX	END=31414930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31414931	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:3.01:60:3
chr1	31414932	.	C	.	.	LowGQX	END=31414972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	31418191	.	A	.	.	LowGQX	END=31418332	GT	./.
chr1	31421958	.	G	.	.	LowGQX	END=31421963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:51
chr1	31421964	.	T	.	33	LowGQX	DP=2;MQ=51;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:51:3
chr1	31421965	.	C	.	.	LowGQX	END=31421966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:51
chr1	31421967	.	G	.	33	LowGQX	DP=2;MQ=51;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:51:3
chr1	31421968	.	G	.	.	LowGQX	END=31421969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:51
chr1	31421970	.	T	.	33	LowGQX	DP=2;MQ=51;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:51:3
chr1	31421971	.	C	.	.	LowGQX	END=31421972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:51
chr1	31421973	.	G	.	33	LowGQX	DP=2;MQ=51;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:51:3
chr1	31421974	.	A	.	.	LowGQX	END=31421977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:51
chr1	31421978	.	T	.	33	LowGQX	DP=2;MQ=51;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:51:3
chr1	31421979	.	G	.	.	LowGQX	END=31421994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:51
chr1	31421995	.	A	.	.	LowGQX	.	GT	./.
chr1	31421996	.	T	.	33	LowGQX	DP=2;MQ=51;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:51:3
chr1	31421997	.	T	.	.	LowGQX	END=31421998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	31421999	.	T	.	.	LowGQX	.	GT	./.
chr1	31422000	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr1	31422001	.	A	.	.	LowGQX	END=31422004	GT	./.
chr1	31422005	.	C	.	.	LowGQX	END=31422006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	31422007	.	G	.	.	LowGQX	END=31422009	GT	./.
chr1	31422010	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr1	31422011	.	T	.	.	LowGQX	END=31422016	GT	./.
chr1	31422017	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr1	31422018	.	T	.	.	LowGQX	.	GT	./.
chr1	31422019	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr1	31422020	.	A	.	.	LowGQX	END=31422027	GT	./.
chr1	31422028	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr1	31422029	.	A	.	.	LowGQX	END=31422036	GT	./.
chr1	31422037	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr1	31422038	.	A	.	.	LowGQX	END=31422039	GT	./.
chr1	31422040	.	C	.	.	LowGQX	END=31422041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	31422042	.	T	.	.	LowGQX	END=31422044	GT	./.
chr1	31422045	.	C	.	.	LowGQX	END=31422047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	31422048	.	G	.	.	LowGQX	.	GT	./.
chr1	31422049	.	A	.	.	LowGQX	END=31422050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	31422051	.	A	.	.	LowGQX	END=31422053	GT	./.
chr1	31422054	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr1	31422055	.	G	.	.	LowGQX	.	GT	./.
chr1	31422056	.	C	.	.	LowGQX	END=31422057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	31422973	.	C	.	.	LowGQX	END=31422981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31422982	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	31422983	.	C	.	.	LowGQX	END=31423036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31423037	.	C	.	.	LowGQX	END=31423110	GT	./.
chr1	31425079	.	A	.	.	LowGQX	END=31425212	GT	./.
chr1	31426559	.	A	.	.	LowGQX	END=31426564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31426565	.	A	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	31426566	.	C	.	.	LowGQX	END=31426697	GT	./.
chr1	31426698	.	T	.	.	LowGQX	END=31426814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31426815	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	31426816	.	T	.	.	LowGQX	END=31426830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31437519	.	A	.	.	LowGQX	END=31437759	GT	./.
chr1	31438827	.	A	.	.	LowGQX	END=31439127	GT	./.
chr1	31440012	.	A	.	.	LowGQX	END=31440159	GT	./.
chr1	31440998	.	A	.	.	LowGQX	END=31441046	GT	./.
chr1	31441047	.	G	.	.	LowGQX	END=31441053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31441054	.	T	.	.	LowGQX	.	GT	./.
chr1	31441055	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31441056	.	A	.	.	LowGQX	END=31441058	GT	./.
chr1	31441059	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31441060	.	C	.	.	LowGQX	.	GT	./.
chr1	31441061	.	A	.	.	LowGQX	END=31441078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31441079	.	C	.	.	LowGQX	.	GT	./.
chr1	31441080	.	C	.	.	LowGQX	END=31441086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31441087	.	C	.	.	LowGQX	END=31441088	GT	./.
chr1	31441089	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31441090	.	A	.	.	LowGQX	.	GT	./.
chr1	31441091	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31441092	.	C	.	.	LowGQX	.	GT	./.
chr1	31441093	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31441094	.	T	.	.	LowGQX	END=31441095	GT	./.
chr1	31441096	.	A	.	.	LowGQX	END=31441097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31441199	.	A	.	.	LowGQX	END=31441398	GT	./.
chr1	31445854	.	G	.	.	LowGQX	END=31445953	GT	./.
chr1	31447496	.	A	.	.	LowGQX	END=31447651	GT	./.
chr1	31452907	.	A	.	.	LowGQX	END=31453075	GT	./.
chr1	31454156	.	T	.	.	LowGQX	END=31454179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31454180	.	C	.	.	LowGQX	END=31454255	GT	./.
chr1	31465235	.	A	.	.	LowGQX	END=31465509	GT	./.
chr1	31467899	.	A	.	.	LowGQX	END=31467963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31467964	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:2:3.01:60:3
chr1	31467965	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:2:3.01:60:3
chr1	31467966	.	A	.	.	LowGQX	END=31468015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31468016	.	T	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	31468017	.	G	.	.	LowGQX	END=31468066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31468067	.	C	.	.	LowGQX	END=31468069	GT	./.
chr1	31478698	.	A	.	.	LowGQX	END=31478797	GT	./.
chr1	31478798	.	G	.	.	LowGQX	END=31478880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31479839	.	A	.	.	LowGQX	END=31479951	GT	./.
chr1	31501628	.	C	.	.	LowGQX	END=31501727	GT	./.
chr1	31528174	.	G	.	.	LowGQX	END=31528261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31528262	.	T	.	.	LowGQX	.	GT	./.
chr1	31528263	.	C	.	.	LowGQX	END=31528273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31532049	.	A	.	.	LowGQX	END=31532424	GT	./.
chr1	31538464	.	G	.	.	LowGQX	END=31538633	GT	./.
chr1	31654505	.	G	.	.	LowGQX	END=31654576	GT	./.
chr1	31654577	.	A	.	.	LowGQX	END=31654604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31654698	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31654699	.	T	.	.	LowGQX	.	GT	./.
chr1	31654700	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31654701	.	A	.	.	LowGQX	END=31654702	GT	./.
chr1	31654703	.	C	.	.	LowGQX	END=31654712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31654713	.	A	.	.	LowGQX	.	GT	./.
chr1	31654714	.	G	.	.	LowGQX	END=31654723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31654724	.	C	.	.	LowGQX	END=31654797	GT	./.
chr1	31655358	.	C	.	.	LowGQX	END=31655457	GT	./.
chr1	31656662	.	A	.	.	LowGQX	END=31656863	GT	./.
chr1	31658085	.	G	.	.	LowGQX	END=31658184	GT	./.
chr1	31660895	.	A	.	.	LowGQX	END=31661034	GT	./.
chr1	31712258	.	A	.	.	LowGQX	END=31712417	GT	./.
chr1	31732483	.	T	.	.	LowGQX	END=31732970	GT	./.
chr1	31733817	.	A	.	.	LowGQX	END=31734023	GT	./.
chr1	31734374	.	A	.	.	LowGQX	END=31734481	GT	./.
chr1	31740646	.	T	.	.	LowGQX	END=31740798	GT	./.
chr1	31742003	.	A	.	.	LowGQX	END=31742172	GT	./.
chr1	31744224	.	A	.	.	LowGQX	END=31744348	GT	./.
chr1	31754219	.	A	.	.	LowGQX	END=31754345	GT	./.
chr1	31762099	.	A	.	.	LowGQX	END=31762268	GT	./.
chr1	31764757	.	C	.	.	LowGQX	END=31764856	GT	./.
chr1	31766024	.	C	.	.	LowGQX	END=31766197	GT	./.
chr1	31769456	.	A	.	.	LowGQX	END=31769635	GT	./.
chr1	31782929	.	G	.	.	LowGQX	END=31783028	GT	./.
chr1	31791013	.	G	.	.	LowGQX	END=31791112	GT	./.
chr1	31791935	.	T	.	.	LowGQX	END=31792034	GT	./.
chr1	31810020	.	A	.	.	LowGQX	END=31810045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31810046	.	C	.	.	LowGQX	END=31810124	GT	./.
chr1	31811800	.	T	.	.	LowGQX	END=31811899	GT	./.
chr1	31819485	.	A	.	.	LowGQX	END=31819665	GT	./.
chr1	31821634	.	A	.	.	LowGQX	END=31821725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	31821726	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	31821727	.	T	.	.	LowGQX	END=31821823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31836877	.	A	.	.	LowGQX	END=31837042	GT	./.
chr1	31838710	.	T	.	.	PASS	END=31838741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	31838742	.	T	.	.	PASS	END=31838809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	31840238	.	A	.	.	PASS	END=31840281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	31840282	.	C	.	.	PASS	END=31840341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	31840342	.	C	.	.	PASS	END=31840343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	31842230	.	A	.	.	PASS	END=31842250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	31842251	.	G	.	.	PASS	END=31842268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	31842269	.	T	.	.	PASS	END=31842391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	31842392	.	G	.	.	PASS	END=31842406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	31845776	.	G	.	.	PASS	END=31845861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	31845862	.	A	.	.	PASS	END=31845875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	31882582	.	G	.	.	LowGQX	END=31882647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31882648	.	A	.	.	LowGQX	END=31882741	GT	./.
chr1	31883207	.	A	.	.	LowGQX	END=31883227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31883228	.	A	.	.	LowGQX	.	GT	./.
chr1	31883229	.	C	.	.	LowGQX	END=31883234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31883235	.	A	.	.	LowGQX	.	GT	./.
chr1	31883236	.	G	.	.	LowGQX	END=31883253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31883254	.	A	.	.	LowGQX	END=31883306	GT	./.
chr1	31886022	.	C	.	.	LowGQX	END=31886075	GT	./.
chr1	31886076	.	G	.	.	LowGQX	END=31886095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31886096	.	A	.	.	LowGQX	.	GT	./.
chr1	31886097	.	G	.	.	LowGQX	END=31886102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31886103	.	A	.	.	LowGQX	.	GT	./.
chr1	31886104	.	G	.	.	LowGQX	END=31886113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31886114	.	T	.	.	LowGQX	.	GT	./.
chr1	31886115	.	G	.	.	LowGQX	END=31886161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31886162	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	31886163	.	C	.	2.30	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:2:0:60:0
chr1	31886164	.	C	.	.	LowGQX	END=31886181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31886776	.	T	.	.	LowGQX	END=31886804	GT	./.
chr1	31886805	.	C	.	.	LowGQX	END=31886816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31886817	.	C	.	.	LowGQX	.	GT	./.
chr1	31886818	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31886819	.	C	.	.	LowGQX	.	GT	./.
chr1	31886820	.	A	.	.	LowGQX	END=31886821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31886822	.	C	.	.	LowGQX	END=31886823	GT	./.
chr1	31886824	.	C	.	.	LowGQX	END=31886825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31886826	.	C	.	.	LowGQX	.	GT	./.
chr1	31886827	.	C	.	.	LowGQX	END=31886832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31886833	.	T	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	31886834	.	C	.	.	LowGQX	END=31886835	GT	./.
chr1	31886836	.	T	.	.	LowGQX	END=31886839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31886840	.	G	.	.	LowGQX	.	GT	./.
chr1	31886841	.	G	.	.	LowGQX	END=31886842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31886843	.	C	.	.	LowGQX	END=31886844	GT	./.
chr1	31886845	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31886846	.	A	.	.	LowGQX	.	GT	./.
chr1	31886847	.	G	.	.	LowGQX	END=31886848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31886849	.	G	.	.	LowGQX	.	GT	./.
chr1	31886850	.	C	.	.	LowGQX	END=31886878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31886879	.	C	.	.	LowGQX	.	GT	./.
chr1	31886880	.	C	.	.	LowGQX	END=31886883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31886884	.	C	.	.	LowGQX	.	GT	./.
chr1	31886885	.	T	.	.	LowGQX	END=31886886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31886887	.	T	.	.	LowGQX	.	GT	./.
chr1	31886888	.	C	.	.	LowGQX	END=31886906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31886907	.	G	.	.	LowGQX	.	GT	./.
chr1	31886908	.	G	.	.	LowGQX	END=31886922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31886923	.	C	.	.	LowGQX	.	GT	./.
chr1	31886924	.	A	.	.	LowGQX	END=31886935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31896538	.	A	.	.	LowGQX	END=31896703	GT	./.
chr1	31897528	.	A	.	.	LowGQX	END=31897596	GT	./.
chr1	31897597	.	C	.	.	LowGQX	END=31897722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31898167	.	C	.	.	LowGQX	END=31898266	GT	./.
chr1	31898621	.	A	.	.	LowGQX	END=31898851	GT	./.
chr1	31899499	.	A	.	.	LowGQX	END=31899672	GT	./.
chr1	31901821	.	C	.	.	LowGQX	END=31901920	GT	./.
chr1	31902242	.	A	.	.	LowGQX	END=31902301	GT	./.
chr1	31902302	.	C	.	.	LowGQX	END=31902387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31905812	.	A	.	.	LowGQX	END=31906034	GT	./.
chr1	31906909	.	A	.	.	LowGQX	END=31907048	GT	./.
chr1	31971857	.	A	.	.	LowGQX	END=31971859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	31971860	.	T	.	.	LowGQX	END=31972012	GT	./.
chr1	31973035	.	T	.	.	LowGQX	END=31973043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31973044	.	G	.	.	LowGQX	.	GT	./.
chr1	31973045	.	T	.	.	LowGQX	END=31973060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31973061	.	G	.	.	LowGQX	.	GT	./.
chr1	31973062	.	G	.	.	LowGQX	END=31973166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	31973167	.	G	.	.	LowGQX	END=31973182	GT	./.
chr1	31973317	.	G	.	.	LowGQX	END=31973447	GT	./.
chr1	32042748	.	C	.	.	LowGQX	END=32042794	GT	./.
chr1	32042795	.	G	.	.	LowGQX	END=32042867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32042868	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	32042869	.	C	.	.	LowGQX	END=32042952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32042953	.	C	.	.	LowGQX	.	GT	./.
chr1	32042954	.	G	.	.	LowGQX	END=32042967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32042968	.	T	.	.	LowGQX	END=32043061	GT	./.
chr1	32044787	.	T	.	.	LowGQX	END=32044886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32045888	.	G	.	.	LowGQX	END=32046270	GT	./.
chr1	32046271	.	C	.	.	LowGQX	END=32046300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32046301	.	A	.	.	LowGQX	.	GT	./.
chr1	32046302	.	A	.	.	LowGQX	END=32046310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32046311	.	T	.	.	LowGQX	.	GT	./.
chr1	32046312	.	T	.	.	LowGQX	END=32046339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32048747	.	C	.	.	LowGQX	END=32048846	GT	./.
chr1	32049060	.	A	.	.	LowGQX	END=32049070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32049071	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32049072	.	G	.	.	LowGQX	END=32049108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32049109	.	A	.	.	LowGQX	END=32049178	GT	./.
chr1	32050277	.	A	.	.	LowGQX	END=32050377	GT	./.
chr1	32050378	.	G	.	.	LowGQX	END=32050393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32050394	.	C	.	.	LowGQX	.	GT	./.
chr1	32050395	.	C	.	.	LowGQX	END=32050404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32050485	.	A	.	.	LowGQX	END=32050534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	32050535	.	C	A	9.30	LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:30.11:39,0,30:60:9:0.667
chr1	32050536	.	T	.	.	LowGQX	END=32050639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32050750	.	A	.	.	LowGQX	END=32050799	GT	./.
chr1	32050800	.	G	.	.	LowGQX	END=32050926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32050927	.	C	.	.	LowGQX	END=32050943	GT	./.
chr1	32051014	.	G	.	.	LowGQX	END=32051020	GT	./.
chr1	32051021	.	G	.	.	LowGQX	END=32051057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32051058	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32051059	.	G	.	.	LowGQX	END=32051113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32051352	.	A	.	.	LowGQX	END=32051481	GT	./.
chr1	32052224	.	G	.	.	LowGQX	END=32052275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32052276	.	C	.	.	LowGQX	END=32052383	GT	./.
chr1	32052407	.	A	.	.	LowGQX	END=32052617	GT	./.
chr1	32084792	.	T	.	.	PASS	END=32084809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	32084810	.	C	.	.	PASS	END=32084849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	32084850	.	G	.	.	PASS	END=32084903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	32084904	.	C	T	2316.90	PASS	BaseQRankSum=0.853;DP=228;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=0.333;QD=10.16;ReadPosRankSum=-0.659;SB=-1187.84	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:119,108:228:99:2347,0,2795:60:99:0.476
chr1	32084905	.	G	.	.	PASS	END=32084994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	32085111	.	T	.	.	PASS	END=32085123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr1	32085124	.	A	.	.	PASS	END=32085162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:325:99:60
chr1	32085163	.	T	.	.	PASS	END=32085274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:368:99:60
chr1	32085275	.	C	.	.	PASS	END=32085300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:60
chr1	32085301	.	C	.	.	PASS	END=32085313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	32086442	.	A	.	.	PASS	END=32086464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	32086465	.	G	.	.	PASS	END=32086667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	32086668	.	C	.	.	PASS	END=32086689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	32087076	.	A	.	.	PASS	END=32087110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	32087111	.	T	.	.	PASS	END=32087172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	32087173	.	C	.	.	PASS	END=32087195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	32089122	.	A	.	.	PASS	END=32089152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	32089153	.	G	.	.	PASS	END=32089199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	32089200	.	T	.	.	PASS	END=32089327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	32089328	.	A	.	.	PASS	END=32089352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	32090596	.	A	.	.	PASS	END=32090721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	32092389	.	A	.	.	PASS	END=32092407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	32092408	.	T	.	.	PASS	END=32092432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	32092433	.	T	.	.	PASS	END=32092524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	32092525	.	A	G	2656.00	PASS	BaseQRankSum=-0.949;DP=245;Dels=0.00;FS=2.280;HRun=0;HaplotypeScore=22.9165;MQ=60;MQ0=0;MQRankSum=0.806;QD=10.84;ReadPosRankSum=-0.014;SB=-1375.52	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:133,112:245:99:2686,0,3377:60:99:0.457
chr1	32092526	.	T	.	.	PASS	END=32092562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	32092563	.	C	.	.	PASS	END=32092578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	32092579	.	T	.	.	PASS	END=32092583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	32092886	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	32092887	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	32092888	.	C	.	4.68	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.01:60:0
chr1	32092889	.	A	.	.	LowGQX	END=32092894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	32092895	.	C	.	.	LowGQX	END=32092897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	32092898	.	A	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	32092899	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	32092900	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	32092901	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	32092902	.	C	.	.	LowGQX	END=32092919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	32092920	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	32092921	.	C	.	.	LowGQX	END=32092923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	32092924	.	G	.	.	LowGQX	END=32092932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	32092933	.	G	.	.	LowGQX	END=32092936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	32092937	.	T	.	.	LowGQX	.	GT	./.
chr1	32092938	.	C	.	.	LowGQX	END=32092941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	32092942	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	32092943	.	C	.	.	LowGQX	END=32092946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	32092947	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	32092948	.	G	.	.	LowGQX	END=32092949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	32092950	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	32092951	.	C	.	.	LowGQX	END=32092952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	32092953	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	32092954	.	A	.	.	LowGQX	END=32092959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	32092960	.	C	.	13.53	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.09:60:0
chr1	32092961	.	A	.	.	LowGQX	END=32092962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	32092963	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	32092964	.	T	.	.	LowGQX	END=32092972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	32092973	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	32092974	.	T	.	.	LowGQX	END=32092981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	32092982	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	32092983	.	C	.	.	LowGQX	END=32092985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	32096212	.	G	.	.	LowGQX	END=32096445	GT	./.
chr1	32097920	.	T	.	.	LowGQX	END=32098241	GT	./.
chr1	32098758	.	A	.	.	LowGQX	END=32098917	GT	./.
chr1	32100446	.	T	.	.	LowGQX	END=32100545	GT	./.
chr1	32100821	.	A	.	.	LowGQX	END=32101052	GT	./.
chr1	32101053	.	C	.	.	LowGQX	END=32101115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32101116	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32101117	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32101118	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32101119	.	C	.	.	LowGQX	END=32101125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32110404	.	C	.	.	LowGQX	END=32110503	GT	./.
chr1	32118250	.	T	.	.	LowGQX	END=32118456	GT	./.
chr1	32119189	.	G	.	.	LowGQX	END=32119190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32119191	.	A	.	.	LowGQX	.	GT	./.
chr1	32119192	.	T	.	.	LowGQX	END=32119193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32119194	.	T	.	.	LowGQX	.	GT	./.
chr1	32119195	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32119196	.	C	.	.	LowGQX	.	GT	./.
chr1	32119197	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32119198	.	A	.	.	LowGQX	.	GT	./.
chr1	32119199	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32119200	.	C	.	.	LowGQX	.	GT	./.
chr1	32119201	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32119202	.	G	.	.	LowGQX	END=32119210	GT	./.
chr1	32119211	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32119212	.	G	.	.	LowGQX	END=32119213	GT	./.
chr1	32119214	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32119215	.	G	.	.	LowGQX	.	GT	./.
chr1	32119216	.	A	.	.	LowGQX	END=32119221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32119222	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32119223	.	T	.	.	LowGQX	END=32119228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32119229	.	G	.	.	LowGQX	.	GT	./.
chr1	32119230	.	C	.	.	LowGQX	END=32119237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32119238	.	A	.	.	LowGQX	.	GT	./.
chr1	32119239	.	T	.	.	LowGQX	END=32119245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32119246	.	G	.	.	LowGQX	.	GT	./.
chr1	32119247	.	T	.	.	LowGQX	END=32119268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32119269	.	C	.	.	LowGQX	.	GT	./.
chr1	32119270	.	A	.	.	LowGQX	END=32119288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	32119466	.	A	.	.	LowGQX	END=32119646	GT	./.
chr1	32120321	.	G	.	.	LowGQX	END=32120351	GT	./.
chr1	32120352	.	G	.	.	LowGQX	END=32120356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32120357	.	A	.	.	LowGQX	.	GT	./.
chr1	32120358	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32120359	.	A	.	.	LowGQX	.	GT	./.
chr1	32120360	.	G	.	.	LowGQX	END=32120366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32120367	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	32120368	.	T	.	.	LowGQX	END=32120375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32120376	.	A	.	.	LowGQX	.	GT	./.
chr1	32120377	.	G	.	.	LowGQX	END=32120425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32120426	.	A	.	.	LowGQX	.	GT	./.
chr1	32120427	.	C	.	.	LowGQX	END=32120433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32120434	.	A	.	.	LowGQX	.	GT	./.
chr1	32120435	.	T	.	.	LowGQX	END=32120476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32120913	.	A	.	.	LowGQX	END=32120932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32120933	.	A	.	.	LowGQX	.	GT	./.
chr1	32120934	.	G	.	.	LowGQX	END=32121105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32121919	.	T	.	.	LowGQX	END=32121956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32121957	.	C	.	.	LowGQX	END=32122073	GT	./.
chr1	32122602	.	C	.	.	LowGQX	END=32122701	GT	./.
chr1	32124017	.	T	.	.	LowGQX	.	GT	./.
chr1	32124018	.	G	.	.	LowGQX	END=32124029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124030	.	A	.	.	LowGQX	.	GT	./.
chr1	32124031	.	G	.	.	LowGQX	END=32124034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124035	.	T	.	.	LowGQX	.	GT	./.
chr1	32124036	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124037	.	G	.	.	LowGQX	.	GT	./.
chr1	32124038	.	A	.	.	LowGQX	END=32124040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124041	.	C	.	.	LowGQX	.	GT	./.
chr1	32124042	.	A	.	.	LowGQX	END=32124044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124045	.	T	.	.	LowGQX	END=32124048	GT	./.
chr1	32124049	.	T	.	.	LowGQX	END=32124052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124053	.	T	.	.	LowGQX	.	GT	./.
chr1	32124054	.	C	.	.	LowGQX	END=32124055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124056	.	C	.	.	LowGQX	.	GT	./.
chr1	32124057	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124058	.	C	.	.	LowGQX	.	GT	./.
chr1	32124059	.	T	.	.	LowGQX	END=32124062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124063	.	C	.	.	LowGQX	.	GT	./.
chr1	32124064	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124065	.	A	.	.	LowGQX	.	GT	./.
chr1	32124066	.	T	.	.	LowGQX	END=32124069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124070	.	G	.	.	LowGQX	.	GT	./.
chr1	32124071	.	T	.	.	LowGQX	END=32124076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124077	.	G	.	.	LowGQX	.	GT	./.
chr1	32124078	.	T	.	.	LowGQX	END=32124080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124081	.	G	.	.	LowGQX	.	GT	./.
chr1	32124082	.	A	.	.	LowGQX	END=32124090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124091	.	G	.	.	LowGQX	.	GT	./.
chr1	32124092	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124093	.	G	.	.	LowGQX	END=32124094	GT	./.
chr1	32124095	.	G	.	.	LowGQX	END=32124097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32124098	.	A	.	.	LowGQX	.	GT	./.
chr1	32124099	.	G	.	.	LowGQX	END=32124101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32124102	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32124103	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32124104	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32124105	.	C	.	.	LowGQX	END=32124113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32124114	.	C	.	.	LowGQX	END=32124115	GT	./.
chr1	32124116	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124117	.	G	.	.	LowGQX	.	GT	./.
chr1	32124118	.	G	.	.	LowGQX	END=32124119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124120	.	T	.	.	LowGQX	END=32124121	GT	./.
chr1	32124122	.	G	.	.	LowGQX	END=32124123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124124	.	C	.	.	LowGQX	END=32124126	GT	./.
chr1	32124127	.	G	.	.	LowGQX	END=32124133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124134	.	T	.	.	LowGQX	.	GT	./.
chr1	32124135	.	G	.	.	LowGQX	END=32124143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124144	.	C	.	.	LowGQX	END=32124145	GT	./.
chr1	32124146	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124147	.	T	.	.	LowGQX	.	GT	./.
chr1	32124148	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124149	.	T	.	.	LowGQX	.	GT	./.
chr1	32124150	.	C	.	.	LowGQX	END=32124153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124154	.	T	.	.	LowGQX	END=32124155	GT	./.
chr1	32124156	.	G	.	.	LowGQX	END=32124157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124158	.	T	.	.	LowGQX	.	GT	./.
chr1	32124159	.	C	.	.	LowGQX	END=32124160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124161	.	T	.	.	LowGQX	.	GT	./.
chr1	32124162	.	C	.	.	LowGQX	END=32124174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124175	.	G	.	.	LowGQX	END=32124176	GT	./.
chr1	32124177	.	C	.	.	LowGQX	END=32124187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124188	.	A	.	.	LowGQX	.	GT	./.
chr1	32124189	.	G	.	.	LowGQX	END=32124193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124194	.	G	.	.	LowGQX	.	GT	./.
chr1	32124195	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124196	.	G	.	.	LowGQX	END=32124197	GT	./.
chr1	32124198	.	A	.	.	LowGQX	END=32124202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124203	.	G	.	.	LowGQX	.	GT	./.
chr1	32124204	.	A	.	.	LowGQX	END=32124230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124231	.	C	.	.	LowGQX	.	GT	./.
chr1	32124232	.	T	.	.	LowGQX	END=32124235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32124491	.	G	.	.	LowGQX	END=32124590	GT	./.
chr1	32126163	.	G	.	.	LowGQX	END=32126227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32126228	.	A	.	.	LowGQX	.	GT	./.
chr1	32126229	.	C	.	.	LowGQX	END=32126237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32126238	.	C	.	.	LowGQX	.	GT	./.
chr1	32126239	.	C	.	.	LowGQX	END=32126262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32126644	.	C	.	.	LowGQX	END=32126743	GT	./.
chr1	32126988	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32126989	.	G	.	.	LowGQX	.	GT	./.
chr1	32126990	.	C	.	.	LowGQX	END=32126997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32126998	.	A	.	.	LowGQX	.	GT	./.
chr1	32126999	.	G	.	.	LowGQX	END=32127004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32127005	.	C	.	.	LowGQX	.	GT	./.
chr1	32127006	.	A	.	.	LowGQX	END=32127010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32127011	.	T	.	.	LowGQX	.	GT	./.
chr1	32127012	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32127013	.	A	.	.	LowGQX	.	GT	./.
chr1	32127014	.	C	.	.	LowGQX	END=32127021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32127022	.	C	.	.	LowGQX	.	GT	./.
chr1	32127023	.	C	.	.	LowGQX	END=32127024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32127025	.	G	.	.	LowGQX	.	GT	./.
chr1	32127026	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32127027	.	G	.	.	LowGQX	END=32127028	GT	./.
chr1	32127029	.	G	.	.	LowGQX	END=32127031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32127032	.	C	.	.	LowGQX	.	GT	./.
chr1	32127033	.	A	.	.	LowGQX	END=32127035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32127036	.	A	.	.	LowGQX	.	GT	./.
chr1	32127037	.	T	.	.	LowGQX	END=32127048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32127049	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32127050	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32127051	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32127052	.	T	.	.	LowGQX	END=32127059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32127060	.	C	.	.	LowGQX	.	GT	./.
chr1	32127061	.	T	.	.	LowGQX	END=32127079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32127080	.	T	.	.	LowGQX	.	GT	./.
chr1	32127081	.	T	.	.	LowGQX	END=32127084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32127085	.	A	.	.	LowGQX	.	GT	./.
chr1	32127086	.	T	.	.	LowGQX	END=32127087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32127179	.	G	.	.	LowGQX	END=32127182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32127183	.	T	.	.	LowGQX	END=32127333	GT	./.
chr1	32127852	.	T	.	.	LowGQX	END=32128011	GT	./.
chr1	32128174	.	G	.	.	LowGQX	END=32128177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32128178	.	A	.	.	LowGQX	.	GT	./.
chr1	32128179	.	C	.	.	LowGQX	END=32128184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32128185	.	C	.	.	LowGQX	END=32128186	GT	./.
chr1	32128187	.	C	.	.	LowGQX	END=32128197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32128198	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32128199	.	G	.	.	LowGQX	END=32128209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32128210	.	G	T	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	32128211	.	G	.	.	LowGQX	END=32128216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32128217	.	G	.	.	LowGQX	.	GT	./.
chr1	32128218	.	G	.	.	LowGQX	END=32128224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32128225	.	G	.	.	LowGQX	.	GT	./.
chr1	32128226	.	G	.	.	LowGQX	END=32128250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32128251	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32128252	.	T	.	.	LowGQX	END=32128273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32130701	.	T	.	.	LowGQX	END=32130723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32130724	.	A	.	.	LowGQX	.	GT	./.
chr1	32130725	.	G	.	.	LowGQX	END=32130754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32130755	.	A	.	.	LowGQX	END=32130756	GT	./.
chr1	32130757	.	C	.	.	LowGQX	END=32130760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32130761	.	G	.	.	LowGQX	.	GT	./.
chr1	32130762	.	G	.	.	LowGQX	END=32130768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32130769	.	T	.	.	LowGQX	.	GT	./.
chr1	32130770	.	C	.	.	LowGQX	END=32130779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32130780	.	G	.	.	LowGQX	.	GT	./.
chr1	32130781	.	C	.	.	LowGQX	END=32130782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32130783	.	T	.	.	LowGQX	.	GT	./.
chr1	32130784	.	G	.	.	LowGQX	END=32130789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32130790	.	C	.	.	LowGQX	.	GT	./.
chr1	32130791	.	A	.	.	LowGQX	END=32130794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32130795	.	G	.	.	LowGQX	.	GT	./.
chr1	32130796	.	G	.	.	LowGQX	END=32130797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32130798	.	C	.	.	LowGQX	.	GT	./.
chr1	32130799	.	C	.	.	LowGQX	END=32130801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32130802	.	G	.	.	LowGQX	END=32130803	GT	./.
chr1	32130804	.	G	.	.	LowGQX	END=32130806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32130807	.	C	.	.	LowGQX	.	GT	./.
chr1	32130808	.	C	.	.	LowGQX	END=32130815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32130816	.	C	.	.	LowGQX	.	GT	./.
chr1	32130817	.	C	.	.	LowGQX	END=32130827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32130828	.	G	.	.	LowGQX	.	GT	./.
chr1	32130829	.	G	.	.	LowGQX	END=32130831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32130832	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32130833	.	A	.	.	LowGQX	END=32130854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32131092	.	A	.	.	LowGQX	END=32131251	GT	./.
chr1	32131460	.	G	.	.	LowGQX	END=32131710	GT	./.
chr1	32133153	.	A	.	.	LowGQX	END=32133303	GT	./.
chr1	32133743	.	C	.	.	LowGQX	END=32133893	GT	./.
chr1	32134320	.	G	.	.	LowGQX	END=32134479	GT	./.
chr1	32136116	.	G	.	.	LowGQX	END=32136330	GT	./.
chr1	32137189	.	G	.	.	LowGQX	END=32137192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32137193	.	A	.	.	LowGQX	END=32137194	GT	./.
chr1	32137195	.	C	.	.	LowGQX	END=32137202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32137203	.	C	.	.	LowGQX	END=32137204	GT	./.
chr1	32137205	.	C	.	.	LowGQX	END=32137207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32137208	.	A	.	.	LowGQX	.	GT	./.
chr1	32137209	.	T	.	.	LowGQX	END=32137218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32137219	.	A	.	.	LowGQX	.	GT	./.
chr1	32137220	.	G	.	.	LowGQX	END=32137229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32137230	.	G	.	.	LowGQX	.	GT	./.
chr1	32137231	.	A	.	.	LowGQX	END=32137232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32137233	.	C	.	.	LowGQX	.	GT	./.
chr1	32137234	.	C	.	.	LowGQX	END=32137240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32137241	.	C	.	.	LowGQX	.	GT	./.
chr1	32137242	.	C	.	.	LowGQX	END=32137244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32137245	.	T	.	.	LowGQX	.	GT	./.
chr1	32137246	.	C	.	.	LowGQX	END=32137259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32137260	.	C	.	.	LowGQX	.	GT	./.
chr1	32137261	.	C	.	.	LowGQX	END=32137263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32137264	.	C	.	.	LowGQX	.	GT	./.
chr1	32137265	.	A	.	.	LowGQX	END=32137288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32138011	.	T	.	.	LowGQX	END=32138110	GT	./.
chr1	32138168	.	G	.	.	LowGQX	END=32138230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32138231	.	A	.	.	LowGQX	.	GT	./.
chr1	32138232	.	A	.	.	LowGQX	END=32138249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32138250	.	A	.	.	LowGQX	.	GT	./.
chr1	32138251	.	A	.	.	LowGQX	END=32138258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32138259	.	C	.	.	LowGQX	.	GT	./.
chr1	32138260	.	A	.	.	LowGQX	END=32138267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32138323	.	A	.	.	LowGQX	END=32138352	GT	./.
chr1	32138353	.	C	.	.	LowGQX	END=32138359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32138360	.	T	.	.	LowGQX	.	GT	./.
chr1	32138361	.	G	.	.	LowGQX	END=32138367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32138368	.	T	.	.	LowGQX	.	GT	./.
chr1	32138369	.	C	.	.	LowGQX	END=32138394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32138395	.	T	.	.	LowGQX	.	GT	./.
chr1	32138396	.	A	.	.	LowGQX	END=32138404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32138405	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	32138406	.	G	.	.	LowGQX	.	GT	./.
chr1	32138407	.	G	.	.	LowGQX	END=32138410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32138411	.	T	.	.	LowGQX	.	GT	./.
chr1	32138412	.	C	.	.	LowGQX	END=32138443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32138470	.	G	.	.	LowGQX	END=32138503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32138504	.	G	.	.	LowGQX	END=32138551	GT	./.
chr1	32138552	.	T	.	.	LowGQX	END=32138569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32140575	.	C	.	.	LowGQX	END=32140658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32140659	.	T	.	.	LowGQX	END=32140674	GT	./.
chr1	32140836	.	A	.	.	LowGQX	END=32140935	GT	./.
chr1	32145055	.	C	.	.	LowGQX	.	GT	./.
chr1	32145056	.	C	.	.	LowGQX	END=32145068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145069	.	G	.	.	LowGQX	.	GT	./.
chr1	32145070	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145071	.	G	.	.	LowGQX	.	GT	./.
chr1	32145072	.	C	.	.	LowGQX	END=32145075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145076	.	C	.	.	LowGQX	.	GT	./.
chr1	32145077	.	C	.	.	LowGQX	END=32145082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145083	.	A	.	.	LowGQX	.	GT	./.
chr1	32145084	.	C	.	.	LowGQX	END=32145086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145087	.	T	.	.	LowGQX	END=32145088	GT	./.
chr1	32145089	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145090	.	G	.	.	LowGQX	.	GT	./.
chr1	32145091	.	A	.	.	LowGQX	END=32145105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145106	.	G	.	.	LowGQX	END=32145107	GT	./.
chr1	32145108	.	A	.	.	LowGQX	END=32145116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145117	.	T	.	.	LowGQX	.	GT	./.
chr1	32145118	.	G	.	.	LowGQX	END=32145120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145121	.	A	.	.	LowGQX	.	GT	./.
chr1	32145122	.	T	.	.	LowGQX	END=32145128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145129	.	G	.	.	LowGQX	.	GT	./.
chr1	32145130	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145131	.	T	.	.	LowGQX	.	GT	./.
chr1	32145132	.	T	.	.	LowGQX	END=32145134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145135	.	G	.	.	LowGQX	.	GT	./.
chr1	32145136	.	G	.	.	LowGQX	END=32145137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145138	.	G	.	.	LowGQX	.	GT	./.
chr1	32145139	.	T	.	.	LowGQX	END=32145144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145145	.	A	.	.	LowGQX	.	GT	./.
chr1	32145146	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145147	.	C	.	.	LowGQX	.	GT	./.
chr1	32145148	.	A	.	.	LowGQX	END=32145149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145150	.	C	.	.	LowGQX	.	GT	./.
chr1	32145151	.	A	.	.	LowGQX	END=32145156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145157	.	G	.	.	LowGQX	.	GT	./.
chr1	32145158	.	G	.	.	LowGQX	END=32145159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145160	.	G	.	.	LowGQX	END=32145161	GT	./.
chr1	32145162	.	C	.	.	LowGQX	END=32145163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145164	.	A	.	.	LowGQX	END=32145165	GT	./.
chr1	32145166	.	C	.	.	LowGQX	END=32145168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145169	.	G	.	.	LowGQX	.	GT	./.
chr1	32145170	.	G	.	.	LowGQX	END=32145172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145173	.	C	.	.	LowGQX	.	GT	./.
chr1	32145174	.	A	.	.	LowGQX	END=32145177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145178	.	A	.	.	LowGQX	.	GT	./.
chr1	32145179	.	T	.	.	LowGQX	END=32145180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145181	.	C	.	.	LowGQX	.	GT	./.
chr1	32145182	.	T	.	.	LowGQX	END=32145183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145184	.	A	.	.	LowGQX	.	GT	./.
chr1	32145185	.	C	.	.	LowGQX	END=32145190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145191	.	A	.	.	LowGQX	.	GT	./.
chr1	32145192	.	G	.	.	LowGQX	END=32145195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145196	.	T	.	.	LowGQX	END=32145197	GT	./.
chr1	32145198	.	C	.	.	LowGQX	END=32145199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145200	.	A	.	.	LowGQX	END=32145201	GT	./.
chr1	32145202	.	C	.	.	LowGQX	END=32145203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145204	.	A	.	.	LowGQX	END=32145288	GT	./.
chr1	32145379	.	C	.	.	LowGQX	.	GT	./.
chr1	32145380	.	G	.	.	LowGQX	END=32145381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145382	.	A	.	.	LowGQX	.	GT	./.
chr1	32145383	.	C	.	.	LowGQX	END=32145384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145385	.	A	.	.	LowGQX	.	GT	./.
chr1	32145386	.	G	.	.	LowGQX	END=32145387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145388	.	G	.	.	LowGQX	.	GT	./.
chr1	32145389	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145390	.	A	.	.	LowGQX	.	GT	./.
chr1	32145391	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145392	.	A	.	.	LowGQX	.	GT	./.
chr1	32145393	.	C	.	.	LowGQX	END=32145395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145396	.	G	.	.	LowGQX	.	GT	./.
chr1	32145397	.	C	.	.	LowGQX	END=32145399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145400	.	C	.	.	LowGQX	.	GT	./.
chr1	32145401	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145402	.	C	.	.	LowGQX	.	GT	./.
chr1	32145403	.	A	.	.	LowGQX	END=32145406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145407	.	G	.	.	LowGQX	END=32145408	GT	./.
chr1	32145409	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145410	.	G	.	.	LowGQX	.	GT	./.
chr1	32145411	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145412	.	C	.	.	LowGQX	END=32145413	GT	./.
chr1	32145414	.	C	.	.	LowGQX	END=32145430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145431	.	C	.	.	LowGQX	END=32145432	GT	./.
chr1	32145433	.	A	.	.	LowGQX	END=32145437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145438	.	A	.	.	LowGQX	.	GT	./.
chr1	32145439	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145440	.	G	.	.	LowGQX	END=32145441	GT	./.
chr1	32145442	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145443	.	C	.	.	LowGQX	END=32145444	GT	./.
chr1	32145445	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145446	.	G	.	.	LowGQX	.	GT	./.
chr1	32145447	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145448	.	G	.	.	LowGQX	.	GT	./.
chr1	32145449	.	C	.	.	LowGQX	END=32145455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145456	.	G	.	.	LowGQX	END=32145458	GT	./.
chr1	32145459	.	G	.	.	LowGQX	END=32145460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145461	.	G	.	.	LowGQX	.	GT	./.
chr1	32145462	.	A	.	.	LowGQX	END=32145463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145464	.	T	.	.	LowGQX	.	GT	./.
chr1	32145465	.	G	.	.	LowGQX	END=32145469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145470	.	T	.	.	LowGQX	END=32145472	GT	./.
chr1	32145473	.	C	.	.	LowGQX	END=32145475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145476	.	A	.	.	LowGQX	.	GT	./.
chr1	32145477	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32145478	.	G	.	.	LowGQX	.	GT	./.
chr1	32145623	.	G	.	.	LowGQX	END=32145722	GT	./.
chr1	32146470	.	C	.	.	LowGQX	END=32146569	GT	./.
chr1	32146597	.	C	.	.	LowGQX	END=32146696	GT	./.
chr1	32148520	.	A	.	.	LowGQX	END=32148583	GT	./.
chr1	32148584	.	C	.	.	LowGQX	END=32148619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32148772	.	T	.	.	LowGQX	END=32148871	GT	./.
chr1	32148903	.	G	.	.	LowGQX	END=32149002	GT	./.
chr1	32149279	.	G	.	.	LowGQX	END=32149378	GT	./.
chr1	32149528	.	A	.	.	LowGQX	END=32149627	GT	./.
chr1	32149708	.	A	.	.	LowGQX	END=32149777	GT	./.
chr1	32149778	.	C	.	.	LowGQX	END=32149797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32149798	.	C	.	.	LowGQX	.	GT	./.
chr1	32149799	.	C	.	.	LowGQX	END=32149834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32150122	.	A	.	.	LowGQX	END=32150175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32150176	.	C	.	.	LowGQX	END=32150233	GT	./.
chr1	32150390	.	G	.	.	LowGQX	END=32150489	GT	./.
chr1	32151238	.	A	.	.	LowGQX	END=32151373	GT	./.
chr1	32151665	.	C	.	.	LowGQX	END=32151764	GT	./.
chr1	32151813	.	T	.	.	LowGQX	END=32151912	GT	./.
chr1	32151918	.	T	.	.	LowGQX	END=32152017	GT	./.
chr1	32154036	.	C	.	.	LowGQX	END=32154134	GT	./.
chr1	32154135	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32154284	.	A	.	.	LowGQX	END=32154319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32154320	.	C	.	.	LowGQX	.	GT	./.
chr1	32154321	.	C	.	.	LowGQX	END=32154333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32154334	.	T	.	.	LowGQX	.	GT	./.
chr1	32154335	.	G	.	.	LowGQX	END=32154346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32154347	.	T	.	.	LowGQX	.	GT	./.
chr1	32154348	.	C	.	.	LowGQX	END=32154383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32154457	.	C	.	.	LowGQX	END=32154574	GT	./.
chr1	32154619	.	G	.	.	LowGQX	END=32154642	GT	./.
chr1	32154643	.	T	.	.	LowGQX	END=32154685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32154686	.	C	.	.	LowGQX	END=32154718	GT	./.
chr1	32155340	.	A	.	.	LowGQX	END=32155454	GT	./.
chr1	32155932	.	C	.	.	LowGQX	END=32156031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32156103	.	C	.	.	LowGQX	END=32156202	GT	./.
chr1	32156759	.	C	.	.	LowGQX	END=32156761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32156762	.	C	.	.	LowGQX	.	GT	./.
chr1	32156763	.	G	.	.	LowGQX	END=32156794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32156795	.	T	.	.	LowGQX	.	GT	./.
chr1	32156796	.	C	.	.	LowGQX	END=32156809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32156810	.	T	.	.	LowGQX	.	GT	./.
chr1	32156811	.	G	.	.	LowGQX	END=32156858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32156956	.	T	.	.	LowGQX	END=32156961	GT	./.
chr1	32156962	.	G	.	.	LowGQX	END=32157008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32157009	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	32157010	.	G	.	.	LowGQX	END=32157130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32157131	.	T	.	.	LowGQX	END=32157271	GT	./.
chr1	32157588	.	A	.	.	LowGQX	END=32157658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32157659	.	C	.	.	LowGQX	.	GT	./.
chr1	32157660	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32157661	.	T	.	.	LowGQX	.	GT	./.
chr1	32157662	.	T	.	.	LowGQX	END=32157666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32157667	.	C	.	.	LowGQX	.	GT	./.
chr1	32157668	.	C	.	.	LowGQX	END=32157674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32157675	.	A	.	.	LowGQX	END=32157687	GT	./.
chr1	32158043	.	G	.	.	LowGQX	END=32158142	GT	./.
chr1	32158172	.	C	.	.	LowGQX	END=32158271	GT	./.
chr1	32158339	.	C	.	.	LowGQX	END=32158438	GT	./.
chr1	32158675	.	C	.	.	LowGQX	END=32158774	GT	./.
chr1	32158782	.	A	.	.	LowGQX	END=32158859	GT	./.
chr1	32158860	.	G	.	.	LowGQX	END=32158881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32159653	.	G	.	.	LowGQX	END=32159808	GT	./.
chr1	32160747	.	C	.	.	LowGQX	END=32160846	GT	./.
chr1	32161266	.	C	.	.	LowGQX	END=32161425	GT	./.
chr1	32161666	.	C	.	.	LowGQX	END=32161765	GT	./.
chr1	32162562	.	A	.	.	LowGQX	END=32162691	GT	./.
chr1	32162812	.	G	.	.	LowGQX	END=32162911	GT	./.
chr1	32163505	.	A	.	.	LowGQX	END=32163775	GT	./.
chr1	32164082	.	A	.	.	LowGQX	END=32164174	GT	./.
chr1	32164175	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32164176	.	A	.	.	LowGQX	.	GT	./.
chr1	32164177	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32164178	.	T	.	.	LowGQX	END=32164179	GT	./.
chr1	32164180	.	C	.	.	LowGQX	END=32164184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32164185	.	G	.	.	LowGQX	.	GT	./.
chr1	32164186	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32164187	.	A	.	.	LowGQX	.	GT	./.
chr1	32164188	.	G	.	.	LowGQX	END=32164190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32164191	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	32164192	.	C	.	.	LowGQX	END=32164193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32164194	.	G	.	.	LowGQX	.	GT	./.
chr1	32164195	.	A	.	.	LowGQX	END=32164200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32164201	.	T	.	.	LowGQX	.	GT	./.
chr1	32164202	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32164203	.	C	.	.	LowGQX	.	GT	./.
chr1	32164204	.	T	.	.	LowGQX	END=32164205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32164206	.	T	.	.	LowGQX	.	GT	./.
chr1	32164207	.	T	.	.	LowGQX	END=32164208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32164209	.	T	.	.	LowGQX	.	GT	./.
chr1	32165412	.	A	.	.	LowGQX	END=32165533	GT	./.
chr1	32165630	.	T	.	.	LowGQX	END=32165729	GT	./.
chr1	32167709	.	T	.	.	LowGQX	END=32167808	GT	./.
chr1	32192949	.	G	.	.	LowGQX	END=32193208	GT	./.
chr1	32193586	.	C	.	.	LowGQX	END=32193685	GT	./.
chr1	32193781	.	A	.	.	LowGQX	END=32193883	GT	./.
chr1	32194167	.	G	.	.	LowGQX	END=32194266	GT	./.
chr1	32196399	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196400	.	C	.	.	LowGQX	.	GT	./.
chr1	32196401	.	C	.	.	LowGQX	END=32196402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196403	.	C	.	.	LowGQX	END=32196404	GT	./.
chr1	32196405	.	A	.	.	LowGQX	END=32196406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196407	.	G	.	.	LowGQX	END=32196408	GT	./.
chr1	32196409	.	A	.	.	LowGQX	END=32196412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196413	.	C	.	.	LowGQX	.	GT	./.
chr1	32196414	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196415	.	T	.	.	LowGQX	END=32196417	GT	./.
chr1	32196418	.	T	.	.	LowGQX	END=32196419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196420	.	A	.	.	LowGQX	.	GT	./.
chr1	32196421	.	T	.	.	LowGQX	END=32196422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196423	.	G	.	.	LowGQX	.	GT	./.
chr1	32196424	.	T	.	.	LowGQX	END=32196425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196426	.	G	.	.	LowGQX	END=32196427	GT	./.
chr1	32196428	.	G	.	.	LowGQX	END=32196430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196431	.	G	.	.	LowGQX	.	GT	./.
chr1	32196432	.	G	.	.	LowGQX	END=32196433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196434	.	C	.	.	LowGQX	.	GT	./.
chr1	32196435	.	A	.	.	LowGQX	END=32196436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196437	.	G	.	.	LowGQX	END=32196438	GT	./.
chr1	32196439	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196440	.	G	.	.	LowGQX	END=32196442	GT	./.
chr1	32196443	.	A	.	.	LowGQX	END=32196445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196446	.	C	.	.	LowGQX	END=32196447	GT	./.
chr1	32196448	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196449	.	G	.	.	LowGQX	.	GT	./.
chr1	32196450	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196451	.	T	.	.	LowGQX	END=32196455	GT	./.
chr1	32196456	.	C	.	.	LowGQX	END=32196461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196462	.	T	.	.	LowGQX	END=32196463	GT	./.
chr1	32196464	.	C	.	.	LowGQX	END=32196472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32196473	.	G	.	.	LowGQX	.	GT	./.
chr1	32196474	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32196475	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	32196476	.	C	.	.	LowGQX	END=32196479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32196480	.	T	.	.	LowGQX	.	GT	./.
chr1	32196481	.	G	.	.	LowGQX	END=32196483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196484	.	G	.	.	LowGQX	END=32196485	GT	./.
chr1	32196486	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196487	.	C	.	.	LowGQX	END=32196488	GT	./.
chr1	32196489	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196490	.	T	.	.	LowGQX	END=32196491	GT	./.
chr1	32196492	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196493	.	G	.	.	LowGQX	END=32196494	GT	./.
chr1	32196495	.	G	.	.	LowGQX	END=32196496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196497	.	C	.	.	LowGQX	END=32196502	GT	./.
chr1	32196503	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196504	.	G	.	.	LowGQX	END=32196505	GT	./.
chr1	32196506	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196507	.	G	.	.	LowGQX	END=32196508	GT	./.
chr1	32196509	.	T	.	.	LowGQX	END=32196510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196511	.	G	.	.	LowGQX	END=32196512	GT	./.
chr1	32196513	.	A	.	.	LowGQX	END=32196514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196515	.	G	.	.	LowGQX	END=32196516	GT	./.
chr1	32196517	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196518	.	C	.	.	LowGQX	.	GT	./.
chr1	32196519	.	A	.	.	LowGQX	END=32196521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196522	.	C	.	.	LowGQX	.	GT	./.
chr1	32196523	.	C	.	.	LowGQX	END=32196525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196526	.	A	.	.	LowGQX	.	GT	./.
chr1	32196527	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196528	.	G	.	.	LowGQX	.	GT	./.
chr1	32196529	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196530	.	A	.	.	LowGQX	.	GT	./.
chr1	32196531	.	T	.	.	LowGQX	END=32196532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196533	.	C	.	.	LowGQX	.	GT	./.
chr1	32196534	.	T	.	.	LowGQX	END=32196535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196536	.	G	.	.	LowGQX	.	GT	./.
chr1	32196537	.	A	.	.	LowGQX	END=32196539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196540	.	G	.	.	LowGQX	.	GT	./.
chr1	32196541	.	A	.	.	LowGQX	END=32196542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196543	.	C	.	.	LowGQX	END=32196545	GT	./.
chr1	32196546	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196547	.	A	.	.	LowGQX	END=32196548	GT	./.
chr1	32196549	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196550	.	C	.	.	LowGQX	.	GT	./.
chr1	32196551	.	A	.	.	LowGQX	END=32196555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196556	.	C	.	.	LowGQX	END=32196557	GT	./.
chr1	32196558	.	A	.	.	LowGQX	END=32196559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196560	.	C	.	.	LowGQX	END=32196562	GT	./.
chr1	32196563	.	C	.	.	LowGQX	END=32196564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196565	.	G	.	.	LowGQX	.	GT	./.
chr1	32196566	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196567	.	C	.	.	LowGQX	END=32196568	GT	./.
chr1	32196569	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196570	.	G	.	.	LowGQX	.	GT	./.
chr1	32196571	.	A	.	.	LowGQX	END=32196573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196574	.	G	.	.	LowGQX	END=32196575	GT	./.
chr1	32196576	.	T	.	.	LowGQX	END=32196577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196578	.	C	.	.	LowGQX	.	GT	./.
chr1	32196579	.	A	.	.	LowGQX	END=32196582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196583	.	A	.	.	LowGQX	END=32196584	GT	./.
chr1	32196585	.	A	.	.	LowGQX	END=32196586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196587	.	G	.	.	LowGQX	.	GT	./.
chr1	32196588	.	A	.	.	LowGQX	END=32196589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196590	.	G	.	.	LowGQX	.	GT	./.
chr1	32196591	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196592	.	T	.	.	LowGQX	END=32196593	GT	./.
chr1	32196594	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196595	.	G	.	.	LowGQX	.	GT	./.
chr1	32196596	.	G	.	.	LowGQX	END=32196597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196598	.	A	.	.	LowGQX	.	GT	./.
chr1	32196599	.	G	.	.	LowGQX	END=32196603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196604	.	C	.	.	LowGQX	.	GT	./.
chr1	32196605	.	A	.	.	LowGQX	END=32196608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196609	.	T	.	.	LowGQX	.	GT	./.
chr1	32196610	.	G	.	.	LowGQX	END=32196614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32196615	.	A	.	.	LowGQX	END=32197022	GT	./.
chr1	32197686	.	C	.	.	LowGQX	END=32197718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32197719	.	T	.	.	LowGQX	.	GT	./.
chr1	32197720	.	T	.	.	LowGQX	END=32197753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32197754	.	G	.	.	LowGQX	.	GT	./.
chr1	32197755	.	A	.	.	LowGQX	END=32197769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32197770	.	G	.	.	LowGQX	.	GT	./.
chr1	32197771	.	G	.	.	LowGQX	END=32197785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32198116	.	A	.	.	LowGQX	END=32198197	GT	./.
chr1	32198198	.	T	.	.	LowGQX	END=32198202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32198203	.	A	.	.	LowGQX	.	GT	./.
chr1	32198204	.	C	.	.	LowGQX	END=32198211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32198212	.	A	.	.	LowGQX	.	GT	./.
chr1	32198213	.	C	.	.	LowGQX	END=32198215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32198571	.	A	.	.	LowGQX	END=32198585	GT	./.
chr1	32198586	.	A	.	.	LowGQX	END=32198719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32198720	.	C	.	.	LowGQX	END=32198746	GT	./.
chr1	32200772	.	G	.	.	LowGQX	END=32201268	GT	./.
chr1	32201412	.	C	.	.	LowGQX	END=32201511	GT	./.
chr1	32201907	.	G	.	.	LowGQX	END=32201969	GT	./.
chr1	32201970	.	G	.	.	LowGQX	END=32202006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32202172	.	A	.	.	LowGQX	END=32202244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32202245	.	T	.	.	LowGQX	END=32202326	GT	./.
chr1	32203028	.	G	.	.	LowGQX	END=32203134	GT	./.
chr1	32203251	.	A	.	.	LowGQX	END=32203284	GT	./.
chr1	32203285	.	G	.	.	LowGQX	END=32203290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32203291	.	C	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	32203292	.	G	.	.	LowGQX	END=32203330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32203331	.	G	.	.	LowGQX	END=32203332	GT	./.
chr1	32203333	.	G	.	.	LowGQX	END=32203355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32203356	.	T	.	.	LowGQX	.	GT	./.
chr1	32203357	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32203358	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32203799	.	A	.	.	LowGQX	END=32203929	GT	./.
chr1	32204160	.	C	.	.	LowGQX	.	GT	./.
chr1	32204161	.	C	.	.	LowGQX	END=32204170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204171	.	G	.	.	LowGQX	.	GT	./.
chr1	32204172	.	G	.	.	LowGQX	END=32204174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204175	.	C	.	.	LowGQX	.	GT	./.
chr1	32204176	.	C	.	.	LowGQX	END=32204179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204180	.	C	.	.	LowGQX	END=32204181	GT	./.
chr1	32204182	.	A	.	.	LowGQX	END=32204187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204188	.	G	.	.	LowGQX	END=32204189	GT	./.
chr1	32204190	.	T	.	.	LowGQX	END=32204206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204207	.	T	.	.	LowGQX	END=32204208	GT	./.
chr1	32204209	.	G	.	.	LowGQX	END=32204211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204212	.	C	.	.	LowGQX	.	GT	./.
chr1	32204213	.	A	.	.	LowGQX	END=32204215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204216	.	G	.	.	LowGQX	.	GT	./.
chr1	32204217	.	G	.	.	LowGQX	END=32204229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204230	.	C	.	.	LowGQX	END=32204234	GT	./.
chr1	32204235	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204236	.	G	.	.	LowGQX	END=32204237	GT	./.
chr1	32204238	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204239	.	G	.	.	LowGQX	.	GT	./.
chr1	32204240	.	C	.	.	LowGQX	END=32204244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204245	.	G	.	.	LowGQX	.	GT	./.
chr1	32204246	.	A	.	.	LowGQX	END=32204251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204252	.	G	.	.	LowGQX	.	GT	./.
chr1	32204253	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204254	.	G	.	.	LowGQX	.	GT	./.
chr1	32204255	.	C	.	.	LowGQX	END=32204256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204257	.	G	.	.	LowGQX	.	GT	./.
chr1	32204258	.	T	.	.	LowGQX	END=32204259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204376	.	G	.	.	LowGQX	END=32204388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32204389	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32204390	.	A	.	.	LowGQX	END=32204397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32204398	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32204399	.	T	.	.	LowGQX	END=32204401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32204402	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32204403	.	C	.	.	LowGQX	END=32204429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32204430	.	C	.	.	LowGQX	.	GT	./.
chr1	32204431	.	A	.	.	LowGQX	END=32204463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204464	.	A	.	.	LowGQX	END=32204499	GT	./.
chr1	32204500	.	G	.	.	LowGQX	END=32204505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204506	.	G	.	.	LowGQX	.	GT	./.
chr1	32204507	.	T	.	.	LowGQX	END=32204540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204907	.	A	.	.	LowGQX	END=32204970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32204971	.	G	.	.	LowGQX	.	GT	./.
chr1	32204972	.	G	.	.	LowGQX	END=32204983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204984	.	T	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	32204985	.	C	.	.	LowGQX	END=32204989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204990	.	G	.	.	LowGQX	.	GT	./.
chr1	32204991	.	G	.	.	LowGQX	END=32204997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32204998	.	G	.	.	LowGQX	.	GT	./.
chr1	32204999	.	C	.	.	LowGQX	END=32205000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32205001	.	C	.	.	LowGQX	END=32205203	GT	./.
chr1	32205204	.	C	.	.	LowGQX	END=32205238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32205525	.	A	.	.	LowGQX	END=32205637	GT	./.
chr1	32205696	.	A	.	.	LowGQX	END=32205795	GT	./.
chr1	32205946	.	A	.	.	LowGQX	END=32206038	GT	./.
chr1	32206039	.	C	.	.	LowGQX	END=32206080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32206081	.	A	.	.	LowGQX	.	GT	./.
chr1	32206082	.	C	.	.	LowGQX	END=32206083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32206084	.	A	.	.	LowGQX	.	GT	./.
chr1	32206085	.	C	.	.	LowGQX	END=32206091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32206092	.	C	.	.	LowGQX	.	GT	./.
chr1	32206093	.	A	.	.	LowGQX	END=32206096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32206097	.	C	.	.	LowGQX	.	GT	./.
chr1	32206098	.	C	.	.	LowGQX	END=32206102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32206103	.	C	.	.	LowGQX	.	GT	./.
chr1	32206104	.	T	.	.	LowGQX	END=32206110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32206111	.	A	.	.	LowGQX	.	GT	./.
chr1	32206112	.	T	.	.	LowGQX	END=32206115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32206116	.	C	.	.	LowGQX	.	GT	./.
chr1	32206117	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32206118	.	G	.	.	LowGQX	.	GT	./.
chr1	32206119	.	C	.	.	LowGQX	END=32206144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32206972	.	A	.	.	LowGQX	END=32206992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32206993	.	T	.	.	LowGQX	END=32207082	GT	./.
chr1	32207223	.	A	.	.	LowGQX	END=32207328	GT	./.
chr1	32207399	.	A	.	.	LowGQX	END=32207524	GT	./.
chr1	32207525	.	G	.	.	LowGQX	END=32207570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32207652	.	A	.	.	LowGQX	END=32207680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32207681	.	G	.	.	LowGQX	.	GT	./.
chr1	32207682	.	G	.	.	LowGQX	END=32207685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32207686	.	T	.	.	LowGQX	.	GT	./.
chr1	32207687	.	C	.	.	LowGQX	END=32207705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32207706	.	T	.	.	LowGQX	.	GT	./.
chr1	32207707	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32207708	.	T	.	.	LowGQX	.	GT	./.
chr1	32207709	.	G	.	.	LowGQX	END=32207717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32207718	.	T	.	.	LowGQX	.	GT	./.
chr1	32207719	.	G	.	.	LowGQX	END=32207806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32207807	.	A	.	.	LowGQX	END=32207820	GT	./.
chr1	32208437	.	A	.	.	LowGQX	END=32208605	GT	./.
chr1	32209792	.	A	.	.	LowGQX	END=32209981	GT	./.
chr1	32210241	.	C	.	.	LowGQX	END=32210340	GT	./.
chr1	32221598	.	A	.	.	LowGQX	END=32221606	GT	./.
chr1	32221607	.	C	.	.	LowGQX	END=32221758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32221759	.	C	.	.	LowGQX	.	GT	./.
chr1	32221760	.	A	.	.	LowGQX	END=32221774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32221775	.	T	.	.	LowGQX	.	GT	./.
chr1	32221776	.	G	.	.	LowGQX	END=32221827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32221828	.	A	.	.	LowGQX	END=32222418	GT	./.
chr1	32222763	.	G	.	.	LowGQX	END=32222862	GT	./.
chr1	32224887	.	C	.	.	LowGQX	END=32224986	GT	./.
chr1	32230281	.	C	.	.	LowGQX	END=32230373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32230374	.	T	.	.	LowGQX	END=32230403	GT	./.
chr1	32256191	.	T	.	.	LowGQX	END=32256239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32256240	.	T	.	.	LowGQX	.	GT	./.
chr1	32256241	.	T	.	.	LowGQX	END=32256272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32256273	.	T	.	.	LowGQX	END=32256643	GT	./.
chr1	32256644	.	G	.	.	LowGQX	END=32256780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32256781	.	C	.	.	LowGQX	END=32256894	GT	./.
chr1	32257733	.	C	.	.	LowGQX	END=32257768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32257769	.	C	.	.	LowGQX	END=32257776	GT	./.
chr1	32257777	.	G	.	.	LowGQX	END=32257801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32257802	.	G	.	.	LowGQX	.	GT	./.
chr1	32257803	.	A	.	.	LowGQX	END=32257804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32257805	.	T	.	.	LowGQX	.	GT	./.
chr1	32257806	.	A	.	.	LowGQX	END=32257813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32257814	.	A	.	.	LowGQX	.	GT	./.
chr1	32257815	.	C	.	.	LowGQX	END=32257853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32257854	.	T	.	.	LowGQX	.	GT	./.
chr1	32257855	.	G	.	.	LowGQX	END=32257926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32257927	.	T	.	.	LowGQX	END=32258041	GT	./.
chr1	32258274	.	G	.	.	LowGQX	END=32258353	GT	./.
chr1	32258354	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32258355	.	A	.	.	LowGQX	.	GT	./.
chr1	32258356	.	C	.	.	LowGQX	END=32258365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32258366	.	A	.	.	LowGQX	.	GT	./.
chr1	32258367	.	G	.	.	LowGQX	END=32258371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32258372	.	G	.	.	LowGQX	.	GT	./.
chr1	32258373	.	G	.	.	LowGQX	END=32258391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	32258392	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	32258393	.	C	.	.	LowGQX	END=32258394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	32258395	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	32258396	.	C	.	.	LowGQX	END=32258402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	32258403	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	32258404	.	C	.	.	LowGQX	END=32258424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	32258425	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	32258877	.	A	.	.	LowGQX	END=32259031	GT	./.
chr1	32259100	.	T	.	.	LowGQX	END=32259500	GT	./.
chr1	32259723	.	A	.	.	LowGQX	END=32259838	GT	./.
chr1	32262095	.	T	.	.	LowGQX	END=32262137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32262138	.	T	.	.	LowGQX	END=32262318	GT	./.
chr1	32263786	.	C	.	.	LowGQX	END=32263789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32263790	.	A	.	.	LowGQX	.	GT	./.
chr1	32263791	.	C	.	.	LowGQX	END=32263863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32263864	.	A	.	.	LowGQX	.	GT	./.
chr1	32263865	.	G	.	.	LowGQX	END=32263869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32263870	.	T	.	.	LowGQX	.	GT	./.
chr1	32263871	.	C	.	.	LowGQX	END=32263883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32263884	.	T	.	.	LowGQX	.	GT	./.
chr1	32263885	.	A	.	.	LowGQX	END=32263894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32263895	.	A	.	.	LowGQX	.	GT	./.
chr1	32263896	.	T	.	.	LowGQX	END=32263907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32263908	.	A	.	.	LowGQX	.	GT	./.
chr1	32263909	.	C	.	.	LowGQX	END=32263917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32263918	.	A	.	.	LowGQX	.	GT	./.
chr1	32263919	.	C	.	.	LowGQX	END=32263931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32263932	.	G	.	.	LowGQX	END=32263946	GT	./.
chr1	32263947	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32263948	.	T	.	.	LowGQX	.	GT	./.
chr1	32263949	.	G	.	.	LowGQX	END=32263963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32263964	.	A	.	.	LowGQX	.	GT	./.
chr1	32263965	.	G	.	.	LowGQX	END=32263968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32263969	.	T	.	.	LowGQX	.	GT	./.
chr1	32263970	.	C	.	.	LowGQX	END=32263984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32264041	.	A	.	.	LowGQX	END=32264097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32264098	.	C	.	.	LowGQX	END=32264360	GT	./.
chr1	32264361	.	G	.	.	LowGQX	END=32264381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32264995	.	G	.	.	LowGQX	END=32265094	GT	./.
chr1	32265388	.	G	.	.	LowGQX	END=32265390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265391	.	T	.	.	LowGQX	END=32265392	GT	./.
chr1	32265393	.	C	.	.	LowGQX	END=32265394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265395	.	T	.	.	LowGQX	END=32265396	GT	./.
chr1	32265397	.	C	.	.	LowGQX	END=32265398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265399	.	G	.	.	LowGQX	END=32265403	GT	./.
chr1	32265404	.	C	.	.	LowGQX	END=32265407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265408	.	A	.	.	LowGQX	.	GT	./.
chr1	32265409	.	C	.	.	LowGQX	END=32265411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265412	.	G	.	.	LowGQX	END=32265413	GT	./.
chr1	32265414	.	G	.	.	LowGQX	END=32265416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265417	.	C	.	.	LowGQX	.	GT	./.
chr1	32265418	.	T	.	.	LowGQX	END=32265419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265420	.	T	.	.	LowGQX	END=32265424	GT	./.
chr1	32265425	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265426	.	C	.	.	LowGQX	END=32265428	GT	./.
chr1	32265429	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265430	.	G	.	.	LowGQX	END=32265431	GT	./.
chr1	32265432	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265433	.	A	.	.	LowGQX	.	GT	./.
chr1	32265434	.	G	.	.	LowGQX	END=32265439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265440	.	C	.	.	LowGQX	END=32265442	GT	./.
chr1	32265443	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265444	.	T	.	.	LowGQX	.	GT	./.
chr1	32265445	.	T	.	.	LowGQX	END=32265447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265448	.	G	.	.	LowGQX	END=32265449	GT	./.
chr1	32265450	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265451	.	T	.	.	LowGQX	END=32265453	GT	./.
chr1	32265454	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265455	.	T	.	.	LowGQX	END=32265460	GT	./.
chr1	32265461	.	C	.	.	LowGQX	END=32265462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265463	.	C	.	.	LowGQX	.	GT	./.
chr1	32265464	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265465	.	C	.	.	LowGQX	END=32265466	GT	./.
chr1	32265467	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265468	.	T	.	.	LowGQX	.	GT	./.
chr1	32265469	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265470	.	G	.	.	LowGQX	END=32265471	GT	./.
chr1	32265472	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265473	.	G	.	.	LowGQX	.	GT	./.
chr1	32265474	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265475	.	G	.	.	LowGQX	END=32265477	GT	./.
chr1	32265478	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265479	.	T	.	.	LowGQX	END=32265480	GT	./.
chr1	32265481	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265482	.	G	.	.	LowGQX	END=32265483	GT	./.
chr1	32265484	.	A	.	.	LowGQX	END=32265485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265486	.	T	.	.	LowGQX	END=32265487	GT	./.
chr1	32265565	.	C	.	.	LowGQX	.	GT	./.
chr1	32265566	.	C	.	.	LowGQX	END=32265570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265571	.	C	.	.	LowGQX	END=32265573	GT	./.
chr1	32265574	.	T	.	.	LowGQX	END=32265582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265583	.	G	.	.	LowGQX	.	GT	./.
chr1	32265584	.	A	.	.	LowGQX	END=32265586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265587	.	G	.	.	LowGQX	.	GT	./.
chr1	32265588	.	A	.	.	LowGQX	END=32265589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265590	.	G	.	.	LowGQX	.	GT	./.
chr1	32265591	.	C	.	.	LowGQX	END=32265596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265597	.	G	.	.	LowGQX	.	GT	./.
chr1	32265598	.	C	.	.	LowGQX	END=32265600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265601	.	G	.	.	LowGQX	END=32265603	GT	./.
chr1	32265604	.	C	.	.	LowGQX	END=32265606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265607	.	A	.	.	LowGQX	END=32265608	GT	./.
chr1	32265609	.	C	.	.	LowGQX	END=32265613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265614	.	T	.	.	LowGQX	.	GT	./.
chr1	32265615	.	G	.	.	LowGQX	END=32265619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265620	.	G	.	.	LowGQX	.	GT	./.
chr1	32265621	.	G	.	.	LowGQX	END=32265661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32265662	.	A	.	.	LowGQX	.	GT	./.
chr1	32265663	.	C	.	.	LowGQX	END=32265725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32265726	.	G	.	.	LowGQX	.	GT	./.
chr1	32265727	.	G	.	.	LowGQX	END=32265744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32265745	.	T	.	.	LowGQX	.	GT	./.
chr1	32265746	.	G	.	.	LowGQX	END=32265751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32265752	.	G	.	.	LowGQX	.	GT	./.
chr1	32265753	.	G	.	.	LowGQX	END=32265756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32265757	.	C	.	.	LowGQX	.	GT	./.
chr1	32265758	.	A	.	.	LowGQX	END=32265784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32266040	.	A	.	.	LowGQX	END=32266220	GT	./.
chr1	32267236	.	A	.	.	LowGQX	END=32267335	GT	./.
chr1	32279550	.	A	.	.	LowGQX	END=32280936	GT	./.
chr1	32374451	.	T	.	.	LowGQX	END=32374563	GT	./.
chr1	32375627	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32375628	.	T	.	.	LowGQX	.	GT	./.
chr1	32375629	.	T	.	.	LowGQX	END=32375638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32375639	.	T	.	.	LowGQX	.	GT	./.
chr1	32375640	.	G	.	.	LowGQX	END=32375661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32375662	.	T	.	.	LowGQX	.	GT	./.
chr1	32375663	.	T	.	.	LowGQX	END=32375672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32375673	.	T	.	.	LowGQX	.	GT	./.
chr1	32375674	.	T	.	.	LowGQX	END=32375678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32375679	.	A	.	.	LowGQX	.	GT	./.
chr1	32375680	.	T	.	.	LowGQX	END=32375688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32375689	.	A	.	.	LowGQX	.	GT	./.
chr1	32375690	.	G	.	.	LowGQX	END=32375719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32375720	.	A	.	.	LowGQX	END=32375726	GT	./.
chr1	32377295	.	A	.	.	LowGQX	END=32377399	GT	./.
chr1	32377400	.	G	.	.	LowGQX	END=32377429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32378566	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32378567	.	C	.	.	LowGQX	.	GT	./.
chr1	32378568	.	A	.	.	LowGQX	END=32378573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32378574	.	A	.	.	LowGQX	.	GT	./.
chr1	32378575	.	C	.	.	LowGQX	END=32378611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32378612	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32378613	.	C	.	.	LowGQX	END=32378665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32379391	.	C	.	.	LowGQX	END=32379490	GT	./.
chr1	32379734	.	C	.	.	LowGQX	END=32379743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32379744	.	T	.	.	LowGQX	.	GT	./.
chr1	32379745	.	G	.	.	LowGQX	END=32379789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32379790	.	C	.	.	LowGQX	END=32380052	GT	./.
chr1	32381493	.	C	.	.	LowGQX	END=32381592	GT	./.
chr1	32384569	.	A	.	.	LowGQX	END=32384668	GT	./.
chr1	32479584	.	C	.	.	LowGQX	END=32479980	GT	./.
chr1	32495897	.	A	.	.	LowGQX	END=32496025	GT	./.
chr1	32497123	.	A	.	.	LowGQX	END=32497243	GT	./.
chr1	32498787	.	A	.	.	LowGQX	END=32498813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32498814	.	A	.	.	LowGQX	.	GT	./.
chr1	32498815	.	C	.	.	LowGQX	END=32498937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32502509	.	A	.	.	LowGQX	END=32502646	GT	./.
chr1	32503434	.	A	.	.	LowGQX	END=32503443	GT	./.
chr1	32503444	.	G	.	.	LowGQX	END=32503597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32503598	.	T	.	.	LowGQX	END=32503639	GT	./.
chr1	32504137	.	G	.	.	LowGQX	END=32504221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32504222	.	T	.	.	LowGQX	END=32504236	GT	./.
chr1	32505096	.	A	.	.	LowGQX	END=32505195	GT	./.
chr1	32508126	.	A	.	.	LowGQX	END=32508227	GT	./.
chr1	32538541	.	A	.	.	LowGQX	END=32538700	GT	./.
chr1	32540551	.	G	.	.	LowGQX	END=32540611	GT	./.
chr1	32540612	.	C	.	.	LowGQX	END=32540678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32541203	.	G	.	.	LowGQX	END=32541423	GT	./.
chr1	32542195	.	G	.	.	LowGQX	END=32542294	GT	./.
chr1	32542357	.	C	.	.	LowGQX	END=32542456	GT	./.
chr1	32542763	.	A	.	.	LowGQX	END=32542804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32542805	.	T	.	.	LowGQX	.	GT	./.
chr1	32542806	.	G	.	.	LowGQX	END=32542875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32542876	.	T	.	.	LowGQX	END=32542921	GT	./.
chr1	32557274	.	A	.	.	LowGQX	END=32557614	GT	./.
chr1	32560383	.	A	.	.	LowGQX	END=32560431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32560432	.	G	.	.	LowGQX	END=32560574	GT	./.
chr1	32566041	.	A	.	.	LowGQX	END=32566301	GT	./.
chr1	32568030	.	A	.	.	LowGQX	END=32568276	GT	./.
chr1	32573684	.	A	.	.	LowGQX	END=32573783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32608566	.	T	.	.	LowGQX	END=32608665	GT	./.
chr1	32620187	.	A	.	.	LowGQX	END=32620324	GT	./.
chr1	32622451	.	C	.	.	LowGQX	END=32622550	GT	./.
chr1	32622945	.	A	.	.	LowGQX	END=32623048	GT	./.
chr1	32623866	.	A	.	.	LowGQX	END=32623896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32623897	.	A	.	.	LowGQX	.	GT	./.
chr1	32623898	.	A	.	.	LowGQX	END=32623954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32623955	.	C	.	.	LowGQX	.	GT	./.
chr1	32623956	.	A	.	.	LowGQX	END=32623965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32624999	.	A	.	.	LowGQX	END=32625134	GT	./.
chr1	32626211	.	T	.	.	LowGQX	END=32626214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32626215	.	G	.	.	LowGQX	END=32626216	GT	./.
chr1	32626217	.	C	.	.	LowGQX	END=32626222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32626223	.	G	.	.	LowGQX	END=32626224	GT	./.
chr1	32626225	.	G	.	.	LowGQX	END=32626245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32626246	.	G	.	.	LowGQX	.	GT	./.
chr1	32626247	.	A	.	.	LowGQX	END=32626250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32626251	.	C	.	.	LowGQX	.	GT	./.
chr1	32626252	.	T	.	.	LowGQX	END=32626269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32626270	.	G	.	.	LowGQX	.	GT	./.
chr1	32626271	.	T	.	.	LowGQX	END=32626274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32626275	.	G	.	.	LowGQX	.	GT	./.
chr1	32626276	.	A	.	.	LowGQX	END=32626282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32626283	.	C	.	.	LowGQX	.	GT	./.
chr1	32626284	.	C	.	.	LowGQX	END=32626310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32627546	.	A	.	.	LowGQX	END=32627549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32627550	.	T	.	.	LowGQX	END=32627649	GT	./.
chr1	32627960	.	A	.	.	LowGQX	END=32627965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32627966	.	C	.	.	LowGQX	.	GT	./.
chr1	32627967	.	T	.	.	LowGQX	END=32627972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32627973	.	T	.	.	LowGQX	.	GT	./.
chr1	32627974	.	T	.	.	LowGQX	END=32627977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32627978	.	C	.	.	LowGQX	.	GT	./.
chr1	32627979	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32627980	.	G	.	.	LowGQX	END=32627981	GT	./.
chr1	32627982	.	A	.	.	LowGQX	END=32627983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32627984	.	T	.	.	LowGQX	END=32627985	GT	./.
chr1	32627986	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32627987	.	C	.	.	LowGQX	.	GT	./.
chr1	32627988	.	T	.	.	LowGQX	END=32627989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32627990	.	G	.	.	LowGQX	END=32627991	GT	./.
chr1	32627992	.	C	.	.	LowGQX	END=32627993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32627994	.	A	.	.	LowGQX	.	GT	./.
chr1	32627995	.	C	.	.	LowGQX	END=32627999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32628000	.	C	.	.	LowGQX	.	GT	./.
chr1	32628001	.	A	.	.	LowGQX	END=32628002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32628003	.	C	.	.	LowGQX	.	GT	./.
chr1	32628004	.	A	.	.	LowGQX	END=32628007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32628008	.	A	.	.	LowGQX	.	GT	./.
chr1	32628009	.	C	.	.	LowGQX	END=32628012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32628013	.	G	.	.	LowGQX	.	GT	./.
chr1	32628014	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32628015	.	C	.	.	LowGQX	.	GT	./.
chr1	32628016	.	T	.	.	LowGQX	END=32628018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32628019	.	C	.	.	LowGQX	.	GT	./.
chr1	32628020	.	T	.	.	LowGQX	END=32628031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32628032	.	G	.	.	LowGQX	.	GT	./.
chr1	32628033	.	C	.	.	LowGQX	END=32628034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32628035	.	G	.	.	LowGQX	.	GT	./.
chr1	32628036	.	G	.	.	LowGQX	END=32628038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32628039	.	C	.	.	LowGQX	END=32628040	GT	./.
chr1	32628041	.	T	.	.	LowGQX	END=32628067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32628068	.	A	.	.	LowGQX	.	GT	./.
chr1	32628069	.	G	.	.	LowGQX	END=32628070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32628071	.	A	.	.	LowGQX	.	GT	./.
chr1	32628072	.	G	.	.	LowGQX	END=32628082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32628083	.	T	.	.	LowGQX	.	GT	./.
chr1	32628084	.	C	.	.	LowGQX	END=32628085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32628086	.	T	.	.	LowGQX	END=32628148	GT	./.
chr1	32628826	.	T	.	.	LowGQX	END=32628925	GT	./.
chr1	32631704	.	A	.	.	LowGQX	END=32631742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32631743	.	A	.	.	LowGQX	.	GT	./.
chr1	32631744	.	C	.	.	LowGQX	END=32631833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32632768	.	A	.	.	LowGQX	END=32632899	GT	./.
chr1	32635481	.	A	.	.	LowGQX	END=32635510	GT	./.
chr1	32635511	.	C	.	.	LowGQX	END=32635522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32635523	.	T	.	.	LowGQX	.	GT	./.
chr1	32635524	.	T	.	.	LowGQX	END=32635542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32635543	.	G	.	.	LowGQX	.	GT	./.
chr1	32635544	.	A	.	.	LowGQX	END=32635553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32635554	.	A	.	.	LowGQX	.	GT	./.
chr1	32635555	.	A	.	.	LowGQX	END=32635556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32635557	.	T	.	.	LowGQX	.	GT	./.
chr1	32635558	.	G	.	.	LowGQX	END=32635578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32635579	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32635580	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32635581	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32635582	.	C	.	.	LowGQX	.	GT	./.
chr1	32635583	.	C	.	.	LowGQX	END=32635596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32635597	.	G	.	.	LowGQX	.	GT	./.
chr1	32635598	.	C	.	.	LowGQX	END=32635606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32635607	.	A	.	.	LowGQX	.	GT	./.
chr1	32635608	.	A	.	.	LowGQX	END=32635609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32635610	.	C	.	.	LowGQX	.	GT	./.
chr1	32635611	.	G	.	.	LowGQX	END=32635623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32635624	.	G	.	.	LowGQX	.	GT	./.
chr1	32635625	.	G	.	.	LowGQX	END=32635643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32635644	.	T	.	.	LowGQX	END=32635645	GT	./.
chr1	32635646	.	A	.	.	LowGQX	END=32635654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32635655	.	G	.	.	LowGQX	.	GT	./.
chr1	32635656	.	C	.	.	LowGQX	END=32635663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32636306	.	A	.	.	LowGQX	END=32636497	GT	./.
chr1	32645945	.	C	.	.	LowGQX	END=32646117	GT	./.
chr1	32646841	.	A	.	.	LowGQX	END=32646936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32646937	.	G	C	3.07	LowGQX;LowQD;SB	BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.02;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.11:30,0,39:60:3:0.333
chr1	32646938	.	G	.	.	LowGQX	END=32646949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	32646950	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	32646951	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	32646952	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	32646953	.	G	.	.	LowGQX	END=32646960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	32646961	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	32646962	.	G	.	.	LowGQX	END=32646966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	32646967	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	32646968	.	G	.	.	LowGQX	END=32646975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	32646976	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	32646977	.	G	.	.	LowGQX	END=32646979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	32646980	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	32646981	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	32646982	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	32646983	.	C	.	.	LowGQX	END=32646985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	32646986	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	32646987	.	C	.	.	LowGQX	END=32647003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32647004	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32647005	.	A	.	.	LowGQX	END=32647014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	32647015	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	32647016	.	A	.	.	LowGQX	END=32647029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	32647030	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	32647031	.	A	.	.	LowGQX	END=32647044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	32647045	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	32647046	.	C	.	.	LowGQX	END=32647051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	32647052	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	32647053	.	C	.	.	LowGQX	END=32647086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	32647087	.	G	.	.	LowGQX	END=32647180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32650122	.	T	.	.	LowGQX	END=32650221	GT	./.
chr1	32653553	.	A	.	.	LowGQX	END=32653727	GT	./.
chr1	32655654	.	A	.	.	LowGQX	END=32655704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32655705	.	T	.	.	LowGQX	.	GT	./.
chr1	32655706	.	G	.	.	LowGQX	END=32655708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32655709	.	C	.	.	LowGQX	.	GT	./.
chr1	32655710	.	T	.	.	LowGQX	END=32655743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32655744	.	T	.	.	LowGQX	END=32655852	GT	./.
chr1	32657910	.	A	.	.	LowGQX	END=32658033	GT	./.
chr1	32658246	.	T	.	.	LowGQX	END=32658341	GT	./.
chr1	32658342	.	T	.	.	LowGQX	END=32658345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32658806	.	C	.	.	LowGQX	END=32658811	GT	./.
chr1	32658812	.	G	.	.	LowGQX	END=32658855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32658856	.	C	.	.	LowGQX	.	GT	./.
chr1	32658857	.	A	.	.	LowGQX	END=32658863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32658864	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	32658865	.	C	.	.	LowGQX	END=32658905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32659664	.	A	.	.	LowGQX	END=32659715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32659716	.	C	.	.	LowGQX	END=32659763	GT	./.
chr1	32660501	.	A	.	.	LowGQX	END=32660517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32660518	.	A	.	.	LowGQX	.	GT	./.
chr1	32660519	.	A	.	.	LowGQX	END=32660639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32660640	.	C	.	.	LowGQX	.	GT	./.
chr1	32660641	.	C	.	.	LowGQX	END=32660664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32660665	.	A	.	.	LowGQX	END=32660798	GT	./.
chr1	32661276	.	G	.	.	LowGQX	END=32661407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32667535	.	C	.	.	PASS	END=32667618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:323:99:60
chr1	32667619	.	C	.	.	PASS	END=32667656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:250:99:60
chr1	32667657	.	C	.	.	PASS	END=32667702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	32667815	.	G	.	.	PASS	END=32667850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	32667851	.	C	.	.	PASS	END=32667863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	32667864	.	T	.	.	PASS	END=32667868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	32667869	.	T	.	.	PASS	END=32667888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	32667889	.	T	.	.	PASS	END=32667892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	32667893	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:63:60
chr1	32667894	.	C	.	.	PASS	END=32667914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	32669478	.	A	.	.	PASS	END=32669504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	32669505	.	G	.	.	PASS	END=32669543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	32669544	.	C	.	.	PASS	END=32669636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	32669637	.	C	.	.	PASS	END=32669648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	32669774	.	G	.	.	PASS	END=32669943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	32669944	.	A	.	.	PASS	END=32669982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	32670197	.	A	.	.	PASS	END=32670237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	32670238	.	A	.	.	PASS	END=32670250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	32670251	.	T	.	.	PASS	END=32670264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	32670265	.	A	.	.	PASS	END=32670308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:95:60
chr1	32670309	.	A	.	.	PASS	END=32670331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	32670332	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr1	32670333	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:84:60
chr1	32670334	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:43:60
chr1	32670335	.	C	.	.	PASS	END=32670349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	32670350	.	A	.	.	PASS	END=32670382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	32670383	.	A	.	.	PASS	END=32670388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	32670389	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:18:60
chr1	32670390	.	C	.	.	PASS	END=32670399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	32670773	.	C	.	.	PASS	END=32670845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:246:99:60
chr1	32670846	.	G	.	.	PASS	END=32670859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	32670860	.	C	.	.	PASS	END=32670870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	32670871	.	T	.	.	PASS	END=32670872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	32671281	.	C	.	.	LowGQX	END=32671564	GT	./.
chr1	32671753	.	A	.	.	LowGQX	END=32671755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32671756	.	C	.	.	LowGQX	.	GT	./.
chr1	32671757	.	C	.	.	LowGQX	END=32671779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32671780	.	G	.	.	LowGQX	.	GT	./.
chr1	32671781	.	A	.	.	LowGQX	END=32671783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32671784	.	C	.	.	LowGQX	.	GT	./.
chr1	32671785	.	C	.	.	LowGQX	END=32671794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32671795	.	G	.	.	LowGQX	.	GT	./.
chr1	32671796	.	C	.	.	LowGQX	END=32671818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32671819	.	T	.	.	LowGQX	.	GT	./.
chr1	32671820	.	T	.	.	LowGQX	END=32671824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32671825	.	G	.	.	LowGQX	.	GT	./.
chr1	32671826	.	A	.	.	LowGQX	END=32671839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32671840	.	A	.	.	LowGQX	.	GT	./.
chr1	32671841	.	C	.	.	LowGQX	END=32671847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32671848	.	A	.	.	LowGQX	.	GT	./.
chr1	32671849	.	C	.	.	LowGQX	END=32671859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32671860	.	A	.	.	LowGQX	.	GT	./.
chr1	32671861	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32671862	.	C	.	.	LowGQX	.	GT	./.
chr1	32671863	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32671864	.	A	.	.	LowGQX	.	GT	./.
chr1	32671865	.	G	.	.	LowGQX	END=32671868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32671869	.	C	.	.	LowGQX	.	GT	./.
chr1	32671870	.	G	.	.	LowGQX	END=32671875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32671876	.	C	.	.	LowGQX	.	GT	./.
chr1	32671877	.	C	.	.	LowGQX	END=32671881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32671882	.	C	.	.	LowGQX	.	GT	./.
chr1	32671883	.	G	.	.	LowGQX	END=32671884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32671885	.	G	.	.	LowGQX	.	GT	./.
chr1	32671886	.	A	.	.	LowGQX	END=32671893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32671894	.	C	.	.	LowGQX	.	GT	./.
chr1	32671895	.	A	.	.	LowGQX	END=32671896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32671897	.	A	.	.	LowGQX	END=32671900	GT	./.
chr1	32672108	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32672109	.	G	.	.	LowGQX	.	GT	./.
chr1	32672110	.	A	.	.	LowGQX	END=32672112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32672113	.	G	.	.	LowGQX	END=32672114	GT	./.
chr1	32672115	.	A	.	.	LowGQX	END=32672118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32672119	.	T	.	.	LowGQX	END=32672120	GT	./.
chr1	32672121	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32672122	.	C	.	.	LowGQX	.	GT	./.
chr1	32672123	.	A	.	.	LowGQX	END=32672124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32672125	.	C	.	.	LowGQX	.	GT	./.
chr1	32672126	.	A	.	.	LowGQX	END=32672132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32672133	.	G	.	.	LowGQX	.	GT	./.
chr1	32672134	.	A	.	.	LowGQX	END=32672135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32672136	.	A	.	.	LowGQX	END=32672137	GT	./.
chr1	32672138	.	C	.	.	LowGQX	END=32672140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32672141	.	G	.	.	LowGQX	.	GT	./.
chr1	32672142	.	A	.	.	LowGQX	END=32672159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32672160	.	A	.	.	LowGQX	.	GT	./.
chr1	32672161	.	G	.	.	LowGQX	END=32672167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32672168	.	G	.	.	LowGQX	.	GT	./.
chr1	32672169	.	G	.	.	LowGQX	END=32672173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32672174	.	G	.	.	LowGQX	.	GT	./.
chr1	32672175	.	G	.	.	LowGQX	END=32672194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32672195	.	A	.	.	LowGQX	END=32672364	GT	./.
chr1	32672601	.	A	.	.	LowGQX	END=32672620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32672621	.	T	.	.	LowGQX	END=32672723	GT	./.
chr1	32672839	.	A	.	.	LowGQX	END=32673188	GT	./.
chr1	32673189	.	G	.	.	LowGQX	END=32673323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32673324	.	G	.	.	LowGQX	END=32673685	GT	./.
chr1	32674694	.	T	.	.	LowGQX	END=32674861	GT	./.
chr1	32674862	.	C	.	.	LowGQX	END=32674873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32674874	.	T	.	.	LowGQX	.	GT	./.
chr1	32674875	.	C	.	.	LowGQX	END=32674896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32674897	.	T	.	.	LowGQX	.	GT	./.
chr1	32674898	.	G	.	.	LowGQX	END=32674908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32674909	.	A	.	.	LowGQX	.	GT	./.
chr1	32674910	.	G	.	.	LowGQX	END=32674911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32674912	.	A	.	.	LowGQX	.	GT	./.
chr1	32674913	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32674914	.	A	.	.	LowGQX	END=32674916	GT	./.
chr1	32674917	.	G	.	.	LowGQX	END=32674918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32674919	.	G	.	.	LowGQX	.	GT	./.
chr1	32674920	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32674921	.	A	.	.	LowGQX	.	GT	./.
chr1	32674922	.	G	.	.	LowGQX	END=32674923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32674924	.	A	.	.	LowGQX	.	GT	./.
chr1	32674925	.	T	.	.	LowGQX	END=32674929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32674930	.	C	.	.	LowGQX	.	GT	./.
chr1	32674931	.	C	.	.	LowGQX	END=32674935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32674936	.	G	.	.	LowGQX	.	GT	./.
chr1	32674937	.	A	.	.	LowGQX	END=32674939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32674940	.	T	.	.	LowGQX	END=32674942	GT	./.
chr1	32674943	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32674944	.	C	.	.	LowGQX	.	GT	./.
chr1	32674945	.	G	.	.	LowGQX	END=32674950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32674951	.	A	.	.	LowGQX	.	GT	./.
chr1	32674952	.	C	.	.	LowGQX	END=32674955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32674956	.	C	.	.	LowGQX	.	GT	./.
chr1	32674957	.	T	.	.	LowGQX	END=32674958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32674959	.	C	.	.	LowGQX	.	GT	./.
chr1	32674960	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32676792	.	C	.	.	LowGQX	END=32676948	GT	./.
chr1	32677350	.	C	.	.	LowGQX	END=32677449	GT	./.
chr1	32677670	.	G	.	.	LowGQX	END=32677802	GT	./.
chr1	32678090	.	G	.	.	LowGQX	END=32678237	GT	./.
chr1	32678325	.	C	.	.	LowGQX	END=32678372	GT	./.
chr1	32678373	.	G	.	.	LowGQX	END=32678424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32680397	.	G	.	.	LowGQX	END=32680533	GT	./.
chr1	32681040	.	G	.	.	LowGQX	END=32681144	GT	./.
chr1	32681401	.	A	.	.	LowGQX	END=32681551	GT	./.
chr1	32682010	.	T	.	.	LowGQX	END=32682118	GT	./.
chr1	32682452	.	A	.	.	LowGQX	END=32682551	GT	./.
chr1	32682567	.	A	.	.	LowGQX	END=32682575	GT	./.
chr1	32682576	.	G	.	.	LowGQX	END=32682590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32682591	.	T	.	.	LowGQX	.	GT	./.
chr1	32682592	.	G	.	.	LowGQX	END=32682753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32682754	.	G	.	.	LowGQX	END=32682769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	32682770	.	A	.	.	LowGQX	END=32682779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32682780	.	G	.	.	LowGQX	.	GT	./.
chr1	32682781	.	A	.	.	LowGQX	END=32682797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32682798	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32682799	.	C	.	.	LowGQX	END=32682930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32682931	.	A	.	.	LowGQX	END=32682954	GT	./.
chr1	32683103	.	C	.	.	LowGQX	END=32683202	GT	./.
chr1	32686716	.	C	.	.	LowGQX	END=32686815	GT	./.
chr1	32687436	.	C	.	.	LowGQX	END=32687621	GT	./.
chr1	32687866	.	G	.	.	LowGQX	END=32687965	GT	./.
chr1	32687995	.	C	.	.	LowGQX	END=32688094	GT	./.
chr1	32688136	.	C	.	.	LowGQX	END=32688169	GT	./.
chr1	32688170	.	C	.	.	LowGQX	END=32688207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32688208	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32688209	.	T	.	.	LowGQX	END=32688223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32688224	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32688225	.	G	.	.	LowGQX	END=32688229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32688230	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32688231	.	T	.	.	LowGQX	END=32688234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32688235	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32689629	.	T	.	.	LowGQX	END=32689667	GT	./.
chr1	32689668	.	A	.	.	LowGQX	END=32689669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32689670	.	G	.	.	LowGQX	.	GT	./.
chr1	32689671	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32689672	.	T	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	32689673	.	G	.	.	LowGQX	.	GT	./.
chr1	32689674	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32689675	.	G	.	.	LowGQX	.	GT	./.
chr1	32689676	.	C	.	.	LowGQX	END=32689682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32689683	.	A	.	.	LowGQX	.	GT	./.
chr1	32689684	.	T	.	.	LowGQX	END=32689693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32689694	.	C	.	.	LowGQX	.	GT	./.
chr1	32689695	.	G	.	.	LowGQX	END=32689698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32689699	.	C	.	.	LowGQX	END=32689702	GT	./.
chr1	32689703	.	G	.	.	LowGQX	END=32689706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32689707	.	T	.	.	LowGQX	END=32689708	GT	./.
chr1	32689709	.	T	.	.	LowGQX	END=32689710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32689711	.	T	.	.	LowGQX	.	GT	./.
chr1	32689712	.	G	.	.	LowGQX	END=32689728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32689994	.	T	.	.	LowGQX	END=32690093	GT	./.
chr1	32691770	.	A	.	.	LowGQX	END=32691923	GT	./.
chr1	32692002	.	A	.	.	LowGQX	END=32692133	GT	./.
chr1	32694098	.	A	.	.	LowGQX	END=32694122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32694123	.	T	.	.	LowGQX	END=32694212	GT	./.
chr1	32694323	.	T	.	.	LowGQX	END=32694422	GT	./.
chr1	32694723	.	T	.	.	LowGQX	END=32694728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32694729	.	C	.	.	LowGQX	END=32694822	GT	./.
chr1	32696466	.	C	.	.	LowGQX	END=32696624	GT	./.
chr1	32696707	.	T	.	.	LowGQX	END=32696806	GT	./.
chr1	32713021	.	C	.	.	LowGQX	END=32713114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32713115	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	32713116	.	G	.	.	LowGQX	END=32713251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	32713252	.	A	.	.	LowGQX	END=32713262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32713263	.	G	.	.	LowGQX	END=32713285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	32713970	.	A	.	.	LowGQX	END=32714204	GT	./.
chr1	32739798	.	A	.	.	LowGQX	END=32739799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32739800	.	T	.	.	LowGQX	.	GT	./.
chr1	32739801	.	G	.	.	LowGQX	END=32739805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32739806	.	T	.	.	LowGQX	.	GT	./.
chr1	32739807	.	C	.	.	LowGQX	END=32739809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32739810	.	A	.	.	LowGQX	.	GT	./.
chr1	32739811	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32739812	.	G	.	.	LowGQX	END=32739813	GT	./.
chr1	32739814	.	T	.	.	LowGQX	END=32739816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32739817	.	C	.	.	LowGQX	END=32739819	GT	./.
chr1	32739820	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32739821	.	A	.	.	LowGQX	END=32739822	GT	./.
chr1	32739823	.	C	.	.	LowGQX	END=32739826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32739827	.	G	.	.	LowGQX	.	GT	./.
chr1	32739828	.	G	.	.	LowGQX	END=32739836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32739837	.	G	.	.	LowGQX	.	GT	./.
chr1	32739838	.	A	.	.	LowGQX	END=32739840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32739841	.	T	.	.	LowGQX	.	GT	./.
chr1	32739842	.	T	.	.	LowGQX	END=32739843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32739844	.	C	.	.	LowGQX	.	GT	./.
chr1	32739845	.	C	.	.	LowGQX	END=32739851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32739852	.	A	.	.	LowGQX	.	GT	./.
chr1	32739853	.	G	.	.	LowGQX	END=32739899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32739900	.	T	.	.	LowGQX	.	GT	./.
chr1	32739901	.	T	.	.	LowGQX	END=32739902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32739903	.	A	.	.	LowGQX	.	GT	./.
chr1	32739904	.	G	.	.	LowGQX	END=32739909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32739910	.	T	.	.	LowGQX	.	GT	./.
chr1	32739911	.	C	.	.	LowGQX	END=32739950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32739951	.	A	.	.	LowGQX	.	GT	./.
chr1	32739952	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32739953	.	A	.	.	LowGQX	.	GT	./.
chr1	32739954	.	C	.	.	LowGQX	END=32739965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32739966	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32739967	.	T	.	.	LowGQX	END=32739995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32739996	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32739997	.	T	.	.	LowGQX	END=32740003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32740004	.	A	.	.	LowGQX	.	GT	./.
chr1	32740005	.	T	.	.	LowGQX	END=32740037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32740336	.	A	.	.	LowGQX	END=32740427	GT	./.
chr1	32740428	.	A	.	.	LowGQX	END=32740483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32740484	.	C	.	.	LowGQX	END=32740487	GT	./.
chr1	32740488	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32740489	.	C	.	.	LowGQX	.	GT	./.
chr1	32740490	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32740491	.	A	.	.	LowGQX	END=32740551	GT	./.
chr1	32740552	.	C	.	.	LowGQX	END=32740559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32740560	.	G	.	.	LowGQX	.	GT	./.
chr1	32740561	.	C	.	.	LowGQX	END=32740612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32740613	.	G	.	.	LowGQX	.	GT	./.
chr1	32740614	.	C	.	.	LowGQX	END=32740644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32740645	.	T	.	.	LowGQX	.	GT	./.
chr1	32740646	.	G	.	.	LowGQX	END=32740686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32740920	.	A	.	.	LowGQX	END=32741022	GT	./.
chr1	32741168	.	A	.	.	LowGQX	END=32741275	GT	./.
chr1	32741513	.	A	.	.	LowGQX	END=32741550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32741551	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32741552	.	C	.	.	LowGQX	END=32741587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32741588	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	32741589	.	C	.	.	LowGQX	END=32741599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	32741600	.	T	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	32741601	.	G	.	.	LowGQX	END=32741649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	32741650	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	32741651	.	C	.	.	LowGQX	END=32741666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	32741936	.	A	.	.	LowGQX	END=32742092	GT	./.
chr1	32742206	.	A	.	.	LowGQX	END=32742333	GT	./.
chr1	32742334	.	A	.	.	LowGQX	END=32742389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32745181	.	G	.	.	LowGQX	END=32745345	GT	./.
chr1	32745346	.	C	.	.	LowGQX	END=32745350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32745440	.	A	.	.	LowGQX	END=32745459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32745460	.	T	.	.	LowGQX	.	GT	./.
chr1	32745461	.	T	.	.	LowGQX	END=32745469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32745470	.	A	.	.	LowGQX	.	GT	./.
chr1	32745471	.	G	.	.	LowGQX	END=32745492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32745493	.	C	.	.	LowGQX	.	GT	./.
chr1	32745494	.	T	.	.	LowGQX	END=32745495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32745496	.	C	.	.	LowGQX	END=32745515	GT	./.
chr1	32745516	.	G	.	.	LowGQX	END=32745520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32745521	.	A	.	.	LowGQX	.	GT	./.
chr1	32745522	.	C	.	.	LowGQX	END=32745531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32745532	.	T	.	.	LowGQX	.	GT	./.
chr1	32745533	.	G	.	.	LowGQX	END=32745538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32745539	.	T	.	.	LowGQX	.	GT	./.
chr1	32745540	.	T	.	.	LowGQX	END=32745583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32745584	.	C	.	.	LowGQX	.	GT	./.
chr1	32745585	.	A	.	.	LowGQX	END=32745597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32745678	.	A	.	.	LowGQX	END=32745813	GT	./.
chr1	32751113	.	A	.	.	LowGQX	END=32751156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32751157	.	A	.	.	LowGQX	.	GT	./.
chr1	32751158	.	C	.	.	LowGQX	END=32751319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32757746	.	A	.	.	LowGQX	END=32757845	GT	./.
chr1	32768220	.	A	.	.	LowGQX	END=32768336	GT	./.
chr1	32782264	.	A	.	.	LowGQX	END=32782385	GT	./.
chr1	32790068	.	A	.	.	LowGQX	END=32790167	GT	./.
chr1	32792538	.	A	.	.	LowGQX	END=32792596	GT	./.
chr1	32792597	.	G	.	.	LowGQX	END=32792618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32792619	.	C	.	.	LowGQX	.	GT	./.
chr1	32792620	.	G	.	.	LowGQX	END=32792635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32792636	.	G	.	.	LowGQX	.	GT	./.
chr1	32792637	.	T	.	.	LowGQX	END=32792653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32792654	.	T	.	.	LowGQX	.	GT	./.
chr1	32792655	.	C	.	.	LowGQX	END=32792663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32792664	.	C	.	.	LowGQX	.	GT	./.
chr1	32792665	.	C	.	.	LowGQX	END=32792680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32793135	.	A	.	.	LowGQX	END=32793199	GT	./.
chr1	32793200	.	C	.	.	LowGQX	END=32793246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32793247	.	G	.	.	LowGQX	.	GT	./.
chr1	32793248	.	A	.	.	LowGQX	END=32793260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32793261	.	G	.	.	LowGQX	.	GT	./.
chr1	32793262	.	G	.	.	LowGQX	END=32793267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32793268	.	G	.	.	LowGQX	END=32793269	GT	./.
chr1	32793270	.	G	.	.	LowGQX	END=32793272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32793273	.	C	.	.	LowGQX	.	GT	./.
chr1	32793274	.	T	.	.	LowGQX	END=32793283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32793284	.	A	.	.	LowGQX	.	GT	./.
chr1	32793285	.	A	.	.	LowGQX	END=32793287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32793288	.	C	.	.	LowGQX	.	GT	./.
chr1	32793289	.	C	.	.	LowGQX	END=32793295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32793296	.	G	.	.	LowGQX	.	GT	./.
chr1	32793297	.	A	.	.	LowGQX	END=32793303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32793304	.	C	.	.	LowGQX	.	GT	./.
chr1	32793305	.	G	.	.	LowGQX	END=32793310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32793311	.	C	.	.	LowGQX	.	GT	./.
chr1	32793312	.	C	.	.	LowGQX	END=32793332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32793333	.	C	.	.	LowGQX	.	GT	./.
chr1	32793334	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32793335	.	C	.	.	LowGQX	.	GT	./.
chr1	32793336	.	T	.	.	LowGQX	END=32793349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32793350	.	C	.	.	LowGQX	END=32793356	GT	./.
chr1	32794666	.	T	.	.	LowGQX	END=32794765	GT	./.
chr1	32796177	.	A	.	.	LowGQX	END=32796289	GT	./.
chr1	32796367	.	A	.	.	LowGQX	END=32796511	GT	./.
chr1	32797073	.	A	.	.	LowGQX	END=32797185	GT	./.
chr1	32797275	.	A	.	.	LowGQX	END=32797409	GT	./.
chr1	32797689	.	A	.	.	LowGQX	END=32797845	GT	./.
chr1	32798277	.	C	.	.	LowGQX	END=32798376	GT	./.
chr1	32798582	.	T	.	.	LowGQX	END=32798681	GT	./.
chr1	32800196	.	A	.	.	LowGQX	END=32800700	GT	./.
chr1	32801485	.	G	.	.	LowGQX	END=32801695	GT	./.
chr1	32826993	.	T	.	.	LowGQX	END=32827165	GT	./.
chr1	32827299	.	G	.	.	LowGQX	END=32827477	GT	./.
chr1	32827518	.	G	.	.	LowGQX	END=32827692	GT	./.
chr1	32828301	.	G	.	.	PASS	END=32828332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	32828333	.	C	.	.	PASS	END=32828363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	32828364	.	A	.	.	PASS	END=32828436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	32828437	.	A	.	.	PASS	END=32828449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	32829194	.	A	.	.	PASS	END=32829234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	32829235	.	T	.	.	PASS	END=32829426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	32829427	.	A	.	.	PASS	END=32829577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	32829578	.	T	.	.	PASS	END=32829721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	32829722	.	G	.	.	PASS	END=32829803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	32829804	.	C	.	.	PASS	END=32829859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	32832026	.	G	.	.	LowGQX	END=32832125	GT	./.
chr1	32832189	.	G	.	.	LowGQX	END=32832288	GT	./.
chr1	32833932	.	T	.	.	LowGQX	END=32834153	GT	./.
chr1	32834826	.	A	.	.	LowGQX	END=32834936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32834937	.	T	.	.	LowGQX	.	GT	./.
chr1	32834938	.	C	.	.	LowGQX	END=32834939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32841861	.	A	.	.	LowGQX	END=32842344	GT	./.
chr1	32843561	.	C	.	.	LowGQX	END=32843660	GT	./.
chr1	32843801	.	G	.	.	LowGQX	END=32843817	GT	./.
chr1	32843818	.	G	.	.	LowGQX	END=32843848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32843849	.	A	.	.	LowGQX	.	GT	./.
chr1	32843850	.	T	.	.	LowGQX	END=32843854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32843855	.	G	.	.	LowGQX	.	GT	./.
chr1	32843856	.	A	.	.	LowGQX	END=32843865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32843866	.	G	.	.	LowGQX	.	GT	./.
chr1	32843867	.	G	.	.	LowGQX	END=32843900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32844323	.	A	.	.	LowGQX	END=32844442	GT	./.
chr1	32846793	.	C	.	.	LowGQX	END=32846892	GT	./.
chr1	32849429	.	A	.	.	LowGQX	END=32849440	GT	./.
chr1	32849441	.	T	.	.	LowGQX	END=32849444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849445	.	A	.	.	LowGQX	.	GT	./.
chr1	32849446	.	G	.	.	LowGQX	END=32849447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849448	.	G	.	.	LowGQX	.	GT	./.
chr1	32849449	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849450	.	T	.	.	LowGQX	.	GT	./.
chr1	32849451	.	C	.	.	LowGQX	END=32849456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849457	.	T	.	.	LowGQX	.	GT	./.
chr1	32849458	.	G	.	.	LowGQX	END=32849465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849466	.	G	.	.	LowGQX	.	GT	./.
chr1	32849467	.	T	.	.	LowGQX	END=32849471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849472	.	C	.	.	LowGQX	END=32849473	GT	./.
chr1	32849474	.	A	.	.	LowGQX	END=32849477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849478	.	G	.	.	LowGQX	.	GT	./.
chr1	32849479	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849480	.	G	.	.	LowGQX	.	GT	./.
chr1	32849481	.	T	.	.	LowGQX	END=32849482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849483	.	A	.	.	LowGQX	.	GT	./.
chr1	32849484	.	T	.	.	LowGQX	END=32849488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849489	.	T	.	.	LowGQX	.	GT	./.
chr1	32849490	.	C	.	.	LowGQX	END=32849492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849493	.	A	.	.	LowGQX	.	GT	./.
chr1	32849494	.	G	.	.	LowGQX	END=32849495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849496	.	C	.	.	LowGQX	.	GT	./.
chr1	32849497	.	G	.	.	LowGQX	END=32849499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849500	.	G	.	.	LowGQX	.	GT	./.
chr1	32849501	.	G	.	.	LowGQX	END=32849506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849507	.	T	.	.	LowGQX	.	GT	./.
chr1	32849508	.	C	.	.	LowGQX	END=32849512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849513	.	G	.	.	LowGQX	.	GT	./.
chr1	32849514	.	A	.	.	LowGQX	END=32849515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849516	.	G	.	.	LowGQX	.	GT	./.
chr1	32849517	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849518	.	G	.	.	LowGQX	.	GT	./.
chr1	32849519	.	G	.	.	LowGQX	END=32849525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849526	.	T	.	.	LowGQX	.	GT	./.
chr1	32849527	.	G	.	.	LowGQX	END=32849529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849530	.	T	.	.	LowGQX	END=32849532	GT	./.
chr1	32849533	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849534	.	A	.	.	LowGQX	.	GT	./.
chr1	32849535	.	T	.	.	LowGQX	END=32849543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849544	.	G	.	.	LowGQX	END=32849545	GT	./.
chr1	32849546	.	A	.	.	LowGQX	END=32849552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849553	.	A	.	.	LowGQX	.	GT	./.
chr1	32849554	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849555	.	A	.	.	LowGQX	END=32849556	GT	./.
chr1	32849557	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849558	.	C	.	.	LowGQX	.	GT	./.
chr1	32849559	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849560	.	T	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	32849561	.	T	.	.	LowGQX	END=32849564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849565	.	T	.	.	LowGQX	.	GT	./.
chr1	32849566	.	C	.	.	LowGQX	END=32849569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849570	.	T	.	.	LowGQX	.	GT	./.
chr1	32849571	.	T	.	.	LowGQX	END=32849572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849573	.	T	.	.	LowGQX	.	GT	./.
chr1	32849574	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849575	.	T	.	.	LowGQX	.	GT	./.
chr1	32849576	.	G	.	.	LowGQX	END=32849578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849579	.	G	.	.	LowGQX	.	GT	./.
chr1	32849580	.	C	.	.	LowGQX	END=32849582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849583	.	C	.	.	LowGQX	.	GT	./.
chr1	32849584	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849585	.	G	.	.	LowGQX	.	GT	./.
chr1	32849586	.	A	.	.	LowGQX	END=32849587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849588	.	G	.	.	LowGQX	.	GT	./.
chr1	32849589	.	A	.	.	LowGQX	END=32849590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32849591	.	C	.	.	LowGQX	END=32849651	GT	./.
chr1	32852378	.	A	.	.	LowGQX	END=32852498	GT	./.
chr1	32859662	.	G	.	.	LowGQX	END=32859693	GT	./.
chr1	32859694	.	G	.	.	LowGQX	END=32859700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32859701	.	A	.	.	LowGQX	.	GT	./.
chr1	32859702	.	G	.	.	LowGQX	END=32859705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32859706	.	T	.	.	LowGQX	.	GT	./.
chr1	32859707	.	G	.	.	LowGQX	END=32859715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32859716	.	A	.	.	LowGQX	.	GT	./.
chr1	32859717	.	G	.	.	LowGQX	END=32859718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32859719	.	T	.	.	LowGQX	.	GT	./.
chr1	32859720	.	C	.	.	LowGQX	END=32859724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32859725	.	A	.	.	LowGQX	.	GT	./.
chr1	32859726	.	C	.	.	LowGQX	END=32859727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32859728	.	A	.	.	LowGQX	.	GT	./.
chr1	32859729	.	T	.	.	LowGQX	END=32859754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32859755	.	A	.	.	LowGQX	.	GT	./.
chr1	32859756	.	C	.	.	LowGQX	END=32859761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32859961	.	G	.	.	LowGQX	END=32860060	GT	./.
chr1	32936225	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936226	.	A	.	.	LowGQX	END=32936227	GT	./.
chr1	32936228	.	G	.	.	LowGQX	END=32936231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936232	.	A	.	.	LowGQX	.	GT	./.
chr1	32936233	.	T	.	.	LowGQX	END=32936235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936236	.	A	.	.	LowGQX	.	GT	./.
chr1	32936237	.	A	.	.	LowGQX	END=32936240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936241	.	T	.	.	LowGQX	END=32936242	GT	./.
chr1	32936243	.	T	.	.	LowGQX	END=32936248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936249	.	C	.	.	LowGQX	END=32936252	GT	./.
chr1	32936253	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936254	.	T	.	.	LowGQX	END=32936255	GT	./.
chr1	32936256	.	T	.	.	LowGQX	END=32936259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936260	.	G	.	.	LowGQX	.	GT	./.
chr1	32936261	.	G	.	.	LowGQX	END=32936265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936266	.	T	.	.	LowGQX	.	GT	./.
chr1	32936267	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936268	.	A	.	.	LowGQX	.	GT	./.
chr1	32936269	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936270	.	T	.	.	LowGQX	.	GT	./.
chr1	32936271	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936272	.	A	.	.	LowGQX	.	GT	./.
chr1	32936273	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936274	.	C	.	.	LowGQX	.	GT	./.
chr1	32936275	.	A	.	.	LowGQX	END=32936279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936280	.	A	.	.	LowGQX	.	GT	./.
chr1	32936281	.	A	.	.	LowGQX	END=32936286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936287	.	A	.	.	LowGQX	.	GT	./.
chr1	32936288	.	C	.	.	LowGQX	END=32936289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936290	.	T	.	.	LowGQX	END=32936291	GT	./.
chr1	32936292	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936293	.	T	.	.	LowGQX	END=32936294	GT	./.
chr1	32936295	.	T	.	.	LowGQX	END=32936298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936299	.	A	.	.	LowGQX	.	GT	./.
chr1	32936300	.	C	.	.	LowGQX	END=32936301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936302	.	G	.	.	LowGQX	.	GT	./.
chr1	32936303	.	C	.	.	LowGQX	END=32936305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936306	.	C	.	.	LowGQX	END=32936307	GT	./.
chr1	32936308	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936309	.	C	.	.	LowGQX	END=32936310	GT	./.
chr1	32936311	.	T	.	.	LowGQX	END=32936312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936313	.	G	.	.	LowGQX	.	GT	./.
chr1	32936314	.	T	.	.	LowGQX	END=32936322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936323	.	G	.	.	LowGQX	END=32936325	GT	./.
chr1	32936326	.	T	.	.	LowGQX	END=32936331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936332	.	A	.	.	LowGQX	.	GT	./.
chr1	32936333	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936334	.	G	.	.	LowGQX	.	GT	./.
chr1	32936335	.	C	.	.	LowGQX	END=32936336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936337	.	C	.	.	LowGQX	.	GT	./.
chr1	32936338	.	A	.	.	LowGQX	END=32936342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936343	.	A	.	.	LowGQX	END=32936346	GT	./.
chr1	32936347	.	T	.	.	LowGQX	END=32936350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936351	.	G	.	.	LowGQX	END=32936352	GT	./.
chr1	32936353	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936354	.	T	.	.	LowGQX	END=32936470	GT	./.
chr1	32936471	.	C	.	.	LowGQX	END=32936532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936533	.	G	.	.	LowGQX	.	GT	./.
chr1	32936534	.	C	.	.	LowGQX	END=32936549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936550	.	G	.	.	LowGQX	.	GT	./.
chr1	32936551	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936552	.	C	.	.	LowGQX	.	GT	./.
chr1	32936553	.	G	.	.	LowGQX	END=32936565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936566	.	G	.	.	LowGQX	.	GT	./.
chr1	32936567	.	C	.	.	LowGQX	END=32936604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936605	.	A	.	.	LowGQX	.	GT	./.
chr1	32936606	.	G	.	.	LowGQX	END=32936608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936609	.	G	.	.	LowGQX	.	GT	./.
chr1	32936610	.	G	.	.	LowGQX	END=32936673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936674	.	C	.	.	LowGQX	END=32936690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	32936691	.	G	.	.	LowGQX	END=32936701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	32936702	.	A	.	.	LowGQX	END=32936703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	32936704	.	G	.	.	LowGQX	END=32936707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	32936708	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	32936709	.	A	.	.	LowGQX	END=32936710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	32936711	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	32936712	.	T	.	.	LowGQX	END=32936726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	32936727	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	32936728	.	C	.	.	LowGQX	END=32936779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	32936780	.	C	.	.	LowGQX	END=32936838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	32936839	.	T	.	.	LowGQX	END=32936857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936858	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	32936859	.	G	.	.	LowGQX	END=32936863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936864	.	T	.	.	LowGQX	.	GT	./.
chr1	32936865	.	G	.	.	LowGQX	END=32936867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936868	.	T	.	.	LowGQX	.	GT	./.
chr1	32936869	.	C	.	.	LowGQX	END=32936872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936873	.	T	.	.	LowGQX	END=32936874	GT	./.
chr1	32936875	.	A	.	.	LowGQX	END=32936883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936884	.	T	.	.	LowGQX	.	GT	./.
chr1	32936885	.	C	.	.	LowGQX	END=32936890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936891	.	T	.	.	LowGQX	.	GT	./.
chr1	32936892	.	C	.	.	LowGQX	END=32936899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936900	.	A	.	.	LowGQX	.	GT	./.
chr1	32936901	.	C	.	.	LowGQX	END=32936903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936904	.	A	.	.	LowGQX	.	GT	./.
chr1	32936905	.	T	.	.	LowGQX	END=32936906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936907	.	G	.	.	LowGQX	.	GT	./.
chr1	32936908	.	A	.	.	LowGQX	END=32936915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936916	.	G	.	.	LowGQX	END=32936917	GT	./.
chr1	32936918	.	G	.	.	LowGQX	END=32936932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936933	.	T	.	.	LowGQX	.	GT	./.
chr1	32936934	.	G	.	.	LowGQX	END=32936935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936936	.	A	.	.	LowGQX	.	GT	./.
chr1	32936937	.	G	.	.	LowGQX	END=32936943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936944	.	T	.	.	LowGQX	.	GT	./.
chr1	32936945	.	G	.	.	LowGQX	END=32936949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936950	.	T	.	.	LowGQX	END=32936951	GT	./.
chr1	32936952	.	G	.	.	LowGQX	END=32936953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936954	.	T	.	.	LowGQX	END=32936955	GT	./.
chr1	32936956	.	A	.	.	LowGQX	END=32936997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32936998	.	T	.	.	LowGQX	.	GT	./.
chr1	32936999	.	G	.	.	LowGQX	END=32937007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32937008	.	C	.	.	LowGQX	END=32937034	GT	./.
chr1	32937035	.	G	.	.	LowGQX	END=32937114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32937115	.	A	.	.	LowGQX	.	GT	./.
chr1	32937116	.	C	.	.	LowGQX	END=32937145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32937146	.	A	.	.	LowGQX	.	GT	./.
chr1	32937147	.	C	.	.	LowGQX	END=32937164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32937165	.	G	.	.	LowGQX	.	GT	./.
chr1	32937166	.	C	.	.	LowGQX	END=32937185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32937186	.	G	.	.	LowGQX	.	GT	./.
chr1	32937187	.	T	.	.	LowGQX	END=32937216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32946491	.	G	.	.	LowGQX	END=32946496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32946497	.	G	.	.	LowGQX	.	GT	./.
chr1	32946498	.	T	.	.	LowGQX	END=32946506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32946507	.	T	.	.	LowGQX	.	GT	./.
chr1	32946508	.	C	.	.	LowGQX	END=32946521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32946522	.	A	.	.	LowGQX	.	GT	./.
chr1	32946523	.	C	.	.	LowGQX	END=32946543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32946544	.	C	.	.	LowGQX	.	GT	./.
chr1	32946545	.	A	.	.	LowGQX	END=32946546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	32946547	.	T	.	.	LowGQX	END=32946670	GT	./.
chr1	32950701	.	G	.	.	LowGQX	END=32951019	GT	./.
chr1	33001710	.	G	.	.	LowGQX	END=33001861	GT	./.
chr1	33001998	.	T	.	.	LowGQX	END=33002157	GT	./.
chr1	33058531	.	G	.	.	LowGQX	END=33059357	GT	./.
chr1	33060653	.	A	.	.	LowGQX	END=33060826	GT	./.
chr1	33065686	.	A	.	.	LowGQX	END=33065867	GT	./.
chr1	33065868	.	G	.	.	LowGQX	END=33065895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33065896	.	T	.	.	LowGQX	.	GT	./.
chr1	33065897	.	G	.	.	LowGQX	END=33065914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33065915	.	A	.	.	LowGQX	.	GT	./.
chr1	33065916	.	T	.	.	LowGQX	END=33065941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33065942	.	G	.	.	LowGQX	.	GT	./.
chr1	33065943	.	T	.	.	LowGQX	END=33065946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33065947	.	G	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	33065948	.	T	.	.	LowGQX	END=33065949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33065950	.	A	.	.	LowGQX	.	GT	./.
chr1	33065951	.	T	.	.	LowGQX	END=33066022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33087401	.	T	.	.	LowGQX	END=33087556	GT	./.
chr1	33093078	.	A	.	.	LowGQX	END=33093177	GT	./.
chr1	33097346	.	T	.	.	LowGQX	END=33097504	GT	./.
chr1	33099238	.	T	.	.	LowGQX	END=33099241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33099242	.	T	.	.	LowGQX	.	GT	./.
chr1	33099243	.	T	.	.	LowGQX	END=33099245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33099246	.	C	.	.	LowGQX	.	GT	./.
chr1	33099247	.	C	.	.	LowGQX	END=33099248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33099249	.	G	.	.	LowGQX	END=33099250	GT	./.
chr1	33099251	.	G	.	.	LowGQX	END=33099254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33099255	.	G	.	.	LowGQX	.	GT	./.
chr1	33099256	.	A	.	.	LowGQX	END=33099262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33099263	.	C	.	.	LowGQX	.	GT	./.
chr1	33099264	.	A	.	.	LowGQX	END=33099265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33099266	.	C	.	.	LowGQX	.	GT	./.
chr1	33099267	.	A	.	.	LowGQX	END=33099271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33099272	.	T	.	.	LowGQX	.	GT	./.
chr1	33099273	.	G	.	.	LowGQX	END=33099279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33099280	.	T	.	.	LowGQX	.	GT	./.
chr1	33099281	.	A	.	.	LowGQX	END=33099286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33099287	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	33099288	.	T	.	.	LowGQX	END=33099289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33099290	.	C	.	.	LowGQX	.	GT	./.
chr1	33099291	.	A	.	.	LowGQX	END=33099293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33099294	.	C	.	.	LowGQX	.	GT	./.
chr1	33099295	.	A	.	.	LowGQX	END=33099301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33099302	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	33099303	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33099304	.	A	.	.	LowGQX	END=33099307	GT	./.
chr1	33099308	.	G	.	.	LowGQX	END=33099313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33099314	.	A	.	.	LowGQX	END=33099315	GT	./.
chr1	33099316	.	T	.	.	LowGQX	END=33099318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33099319	.	A	.	.	LowGQX	.	GT	./.
chr1	33099320	.	A	.	.	LowGQX	END=33099327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33099328	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	33099329	.	C	.	.	LowGQX	END=33099337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33099550	.	A	.	.	LowGQX	END=33099613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33099614	.	A	.	.	LowGQX	END=33099675	GT	./.
chr1	33100332	.	A	.	.	LowGQX	END=33100431	GT	./.
chr1	33116032	.	A	.	.	LowGQX	END=33116156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33116157	.	C	.	.	LowGQX	END=33116168	GT	./.
chr1	33116806	.	G	.	.	LowGQX	END=33116955	GT	./.
chr1	33116956	.	T	.	.	LowGQX	END=33116965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33117513	.	A	.	.	LowGQX	END=33117531	GT	./.
chr1	33117532	.	G	.	.	LowGQX	END=33117543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33117544	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	33117545	.	T	.	.	LowGQX	END=33117548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33117549	.	C	.	.	LowGQX	.	GT	./.
chr1	33117550	.	A	.	.	LowGQX	END=33117554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33117555	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	33117556	.	G	.	.	LowGQX	END=33117607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33117608	.	C	.	.	LowGQX	.	GT	./.
chr1	33117609	.	C	.	.	LowGQX	END=33117658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33117659	.	C	.	.	LowGQX	.	GT	./.
chr1	33117660	.	C	.	.	LowGQX	END=33117662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33117663	.	G	.	.	LowGQX	.	GT	./.
chr1	33117664	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33123026	.	A	.	.	LowGQX	END=33123175	GT	./.
chr1	33127798	.	T	.	.	LowGQX	END=33127897	GT	./.
chr1	33133824	.	A	.	.	LowGQX	END=33133828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	33133829	.	T	.	10.71	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.05:60:0
chr1	33133830	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	33133831	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	33133832	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	33133833	.	A	.	.	LowGQX	END=33133837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	33133838	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	33133839	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	33133840	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	33133841	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	33133842	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	33133843	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	33133844	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	33133845	.	A	.	.	LowGQX	END=33133852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	33133853	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	33133854	.	A	.	.	LowGQX	END=33133877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	33133878	.	C	.	.	LowGQX	.	GT	./.
chr1	33133879	.	A	.	.	LowGQX	END=33133882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33133883	.	A	.	.	LowGQX	.	GT	./.
chr1	33133884	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	33133885	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	33133886	.	A	.	.	LowGQX	END=33133890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33133891	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	33133892	.	A	.	.	LowGQX	END=33133900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33133901	.	G	.	10.70	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.05:60:0
chr1	33133902	.	G	.	.	LowGQX	END=33133917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33133918	.	C	.	.	LowGQX	.	GT	./.
chr1	33133919	.	A	.	.	LowGQX	END=33133946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33133947	.	T	.	.	LowGQX	END=33133969	GT	./.
chr1	33133970	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33133971	.	T	.	.	LowGQX	END=33133972	GT	./.
chr1	33133973	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33133974	.	C	.	.	LowGQX	.	GT	./.
chr1	33133975	.	T	.	.	LowGQX	END=33133977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33133978	.	A	.	.	LowGQX	END=33133984	GT	./.
chr1	33133985	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33133986	.	T	.	.	LowGQX	END=33133988	GT	./.
chr1	33133989	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33133990	.	T	.	.	LowGQX	END=33133992	GT	./.
chr1	33133993	.	A	.	.	LowGQX	END=33133994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33133995	.	A	.	.	LowGQX	END=33133997	GT	./.
chr1	33133998	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33133999	.	G	.	.	LowGQX	END=33134001	GT	./.
chr1	33134338	.	A	.	.	LowGQX	END=33134457	GT	./.
chr1	33134571	.	A	.	.	LowGQX	END=33134689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33134690	.	G	.	.	LowGQX	END=33134735	GT	./.
chr1	33134830	.	A	.	.	LowGQX	END=33134960	GT	./.
chr1	33135076	.	T	.	.	LowGQX	END=33135092	GT	./.
chr1	33135093	.	G	.	.	LowGQX	END=33135175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33138040	.	C	.	.	LowGQX	END=33138139	GT	./.
chr1	33138222	.	A	.	.	LowGQX	END=33138321	GT	./.
chr1	33138390	.	A	.	.	LowGQX	END=33138504	GT	./.
chr1	33139019	.	G	.	.	LowGQX	END=33139181	GT	./.
chr1	33145236	.	G	.	.	LowGQX	END=33145362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33145363	.	G	.	.	LowGQX	END=33145412	GT	./.
chr1	33146087	.	A	.	.	LowGQX	END=33146110	GT	./.
chr1	33146111	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33146112	.	G	.	.	LowGQX	.	GT	./.
chr1	33146113	.	C	.	.	LowGQX	END=33146125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33146126	.	G	.	.	LowGQX	.	GT	./.
chr1	33146127	.	G	.	.	LowGQX	END=33146129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33146130	.	T	.	.	LowGQX	.	GT	./.
chr1	33146131	.	T	.	.	LowGQX	END=33146134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33146135	.	C	.	.	LowGQX	.	GT	./.
chr1	33146136	.	C	.	.	LowGQX	END=33146137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33146138	.	T	.	.	LowGQX	.	GT	./.
chr1	33146139	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33146140	.	A	.	.	LowGQX	.	GT	./.
chr1	33146141	.	C	.	.	LowGQX	END=33146146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33146147	.	G	.	.	LowGQX	.	GT	./.
chr1	33146148	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33146149	.	T	.	.	LowGQX	.	GT	./.
chr1	33146150	.	T	.	.	LowGQX	END=33146153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33146154	.	G	.	.	LowGQX	END=33146157	GT	./.
chr1	33146158	.	T	.	.	LowGQX	END=33146167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33146168	.	G	.	.	LowGQX	END=33146171	GT	./.
chr1	33146172	.	G	.	.	LowGQX	END=33146178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33146179	.	T	.	.	LowGQX	.	GT	./.
chr1	33146180	.	T	.	.	LowGQX	END=33146183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33146184	.	C	.	.	LowGQX	.	GT	./.
chr1	33146185	.	A	.	.	LowGQX	END=33146186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33147376	.	A	.	.	LowGQX	END=33147389	GT	./.
chr1	33147390	.	T	.	.	LowGQX	END=33147475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33149601	.	C	.	.	LowGQX	END=33149609	GT	./.
chr1	33149610	.	C	.	.	LowGQX	END=33149614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33149615	.	A	.	.	LowGQX	.	GT	./.
chr1	33149616	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33149617	.	A	.	.	LowGQX	.	GT	./.
chr1	33149618	.	C	.	.	LowGQX	END=33149625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33149626	.	C	.	.	LowGQX	.	GT	./.
chr1	33149627	.	C	.	.	LowGQX	END=33149632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33149633	.	A	.	.	LowGQX	.	GT	./.
chr1	33149634	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33149635	.	C	.	.	LowGQX	.	GT	./.
chr1	33149636	.	T	.	.	LowGQX	END=33149662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33149663	.	T	.	.	LowGQX	END=33149664	GT	./.
chr1	33149665	.	C	.	.	LowGQX	END=33149666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33149667	.	A	.	.	LowGQX	.	GT	./.
chr1	33149668	.	G	.	.	LowGQX	END=33149700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33149857	.	A	.	.	LowGQX	END=33149985	GT	./.
chr1	33160464	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160465	.	C	.	.	LowGQX	.	GT	./.
chr1	33160466	.	C	.	.	LowGQX	END=33160468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160469	.	G	.	.	LowGQX	.	GT	./.
chr1	33160470	.	T	.	.	LowGQX	END=33160481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160482	.	T	.	.	LowGQX	.	GT	./.
chr1	33160483	.	C	.	.	LowGQX	END=33160492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160493	.	T	.	.	LowGQX	.	GT	./.
chr1	33160494	.	T	.	.	LowGQX	END=33160495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160496	.	T	.	.	LowGQX	END=33160498	GT	./.
chr1	33160499	.	C	.	.	LowGQX	END=33160503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160504	.	C	.	.	LowGQX	.	GT	./.
chr1	33160505	.	A	.	.	LowGQX	END=33160510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160511	.	G	.	.	LowGQX	END=33160513	GT	./.
chr1	33160514	.	C	.	.	LowGQX	END=33160516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160517	.	G	.	.	LowGQX	END=33160518	GT	./.
chr1	33160519	.	C	.	.	LowGQX	END=33160525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33160526	.	G	.	.	LowGQX	.	GT	./.
chr1	33160527	.	T	.	.	LowGQX	END=33160529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33160530	.	C	.	.	LowGQX	.	GT	./.
chr1	33160531	.	T	.	.	LowGQX	END=33160536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160537	.	G	.	.	LowGQX	.	GT	./.
chr1	33160538	.	C	.	.	LowGQX	END=33160540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160541	.	G	.	.	LowGQX	.	GT	./.
chr1	33160542	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160543	.	G	.	.	LowGQX	.	GT	./.
chr1	33160544	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160545	.	A	.	.	LowGQX	.	GT	./.
chr1	33160546	.	G	.	.	LowGQX	END=33160549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160550	.	C	.	.	LowGQX	.	GT	./.
chr1	33160551	.	C	.	.	LowGQX	END=33160555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160556	.	C	.	.	LowGQX	END=33160557	GT	./.
chr1	33160558	.	C	.	.	LowGQX	END=33160579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160580	.	C	.	.	LowGQX	.	GT	./.
chr1	33160581	.	T	.	.	LowGQX	END=33160585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160586	.	C	.	.	LowGQX	.	GT	./.
chr1	33160587	.	A	.	.	LowGQX	END=33160594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160595	.	G	.	.	LowGQX	.	GT	./.
chr1	33160596	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160597	.	T	.	.	LowGQX	.	GT	./.
chr1	33160598	.	C	.	.	LowGQX	END=33160599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160600	.	C	.	.	LowGQX	.	GT	./.
chr1	33160601	.	A	.	.	LowGQX	END=33160604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160605	.	T	.	.	LowGQX	.	GT	./.
chr1	33160606	.	G	.	.	LowGQX	END=33160609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160610	.	T	.	.	LowGQX	.	GT	./.
chr1	33160611	.	C	.	.	LowGQX	END=33160614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160615	.	G	.	.	LowGQX	.	GT	./.
chr1	33160616	.	C	.	.	LowGQX	END=33160620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160621	.	C	.	.	LowGQX	.	GT	./.
chr1	33160622	.	T	.	.	LowGQX	END=33160623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160624	.	T	.	.	LowGQX	.	GT	./.
chr1	33160625	.	G	.	.	LowGQX	END=33160626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160627	.	T	.	.	LowGQX	.	GT	./.
chr1	33160628	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160629	.	C	.	.	LowGQX	.	GT	./.
chr1	33160630	.	C	.	.	LowGQX	END=33160635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160636	.	C	.	.	LowGQX	.	GT	./.
chr1	33160637	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160638	.	T	.	.	LowGQX	.	GT	./.
chr1	33160639	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160640	.	C	.	.	LowGQX	.	GT	./.
chr1	33160641	.	C	.	.	LowGQX	END=33160644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160645	.	C	.	.	LowGQX	.	GT	./.
chr1	33160646	.	T	.	.	LowGQX	END=33160648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160649	.	G	.	.	LowGQX	.	GT	./.
chr1	33160650	.	A	.	.	LowGQX	END=33160667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33160668	.	T	.	.	LowGQX	END=33161645	GT	./.
chr1	33168125	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	33168126	.	G	.	.	LowGQX	END=33168131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33168132	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	33168133	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33168134	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	33168135	.	C	.	.	LowGQX	.	GT	./.
chr1	33168136	.	G	.	.	LowGQX	END=33168147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33168148	.	A	.	.	LowGQX	END=33168149	GT	./.
chr1	33168150	.	C	.	.	LowGQX	END=33168154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33168155	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	33168156	.	C	.	.	LowGQX	END=33168158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33168159	.	C	.	.	LowGQX	.	GT	./.
chr1	33168160	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	33168161	.	G	.	.	LowGQX	END=33168162	GT	./.
chr1	33168163	.	A	.	.	LowGQX	END=33168166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33168167	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	33168168	.	T	.	.	LowGQX	END=33168169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33168170	.	C	.	.	LowGQX	.	GT	./.
chr1	33168171	.	C	.	.	LowGQX	END=33168175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33168176	.	C	.	.	LowGQX	.	GT	./.
chr1	33168177	.	G	.	.	LowGQX	END=33168180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33168181	.	C	.	.	LowGQX	END=33168182	GT	./.
chr1	33168183	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33168184	.	C	.	.	LowGQX	END=33168185	GT	./.
chr1	33168186	.	A	.	.	LowGQX	END=33168188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33168189	.	C	.	.	LowGQX	.	GT	./.
chr1	33168190	.	G	.	.	LowGQX	END=33168191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33168192	.	G	.	.	LowGQX	.	GT	./.
chr1	33168193	.	C	.	.	LowGQX	END=33168194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33168195	.	C	.	.	LowGQX	.	GT	./.
chr1	33168196	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33168197	.	G	.	.	LowGQX	.	GT	./.
chr1	33168198	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33168199	.	A	.	.	LowGQX	END=33168200	GT	./.
chr1	33168201	.	T	.	.	LowGQX	END=33168204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33168205	.	C	.	.	LowGQX	.	GT	./.
chr1	33168206	.	T	.	.	LowGQX	END=33168207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33168208	.	C	.	.	LowGQX	.	GT	./.
chr1	33168209	.	C	.	.	LowGQX	END=33168213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33168214	.	G	.	.	LowGQX	END=33168216	GT	./.
chr1	33168217	.	C	.	.	LowGQX	END=33168218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33168219	.	G	.	.	LowGQX	.	GT	./.
chr1	33168220	.	G	.	.	LowGQX	END=33168221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33168222	.	C	.	.	LowGQX	.	GT	./.
chr1	33168223	.	G	.	.	LowGQX	END=33168227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33168228	.	C	.	.	LowGQX	.	GT	./.
chr1	33168229	.	G	.	.	LowGQX	END=33168230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33168231	.	C	.	.	LowGQX	.	GT	./.
chr1	33168232	.	C	.	.	LowGQX	END=33168241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33168242	.	C	.	.	LowGQX	.	GT	./.
chr1	33168243	.	G	.	.	LowGQX	END=33168245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33168246	.	G	.	.	LowGQX	.	GT	./.
chr1	33168247	.	C	.	.	LowGQX	END=33168254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33168255	.	T	.	.	LowGQX	END=33168284	GT	./.
chr1	33207483	.	C	.	.	LowGQX	END=33207852	GT	./.
chr1	33219626	.	T	.	.	LowGQX	END=33219717	GT	./.
chr1	33219718	.	G	.	.	LowGQX	END=33219785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33231290	.	G	.	.	LowGQX	END=33231449	GT	./.
chr1	33233386	.	A	.	.	LowGQX	END=33233455	GT	./.
chr1	33233456	.	G	.	.	LowGQX	END=33233500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33233501	.	C	.	.	LowGQX	.	GT	./.
chr1	33233502	.	A	.	.	LowGQX	END=33233560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33233641	.	A	.	.	LowGQX	END=33233705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33233706	.	C	.	.	LowGQX	END=33233740	GT	./.
chr1	33234251	.	A	.	.	LowGQX	END=33234257	GT	./.
chr1	33234258	.	C	.	.	LowGQX	END=33234277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33234278	.	A	.	.	LowGQX	.	GT	./.
chr1	33234279	.	C	.	.	LowGQX	END=33234289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33234290	.	T	.	.	LowGQX	.	GT	./.
chr1	33234291	.	C	.	.	LowGQX	END=33234303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33234304	.	A	.	.	LowGQX	END=33234305	GT	./.
chr1	33234306	.	A	.	.	LowGQX	END=33234320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33234321	.	G	.	.	LowGQX	.	GT	./.
chr1	33234322	.	A	.	.	LowGQX	END=33234343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33234344	.	T	.	.	LowGQX	.	GT	./.
chr1	33234345	.	C	.	.	LowGQX	END=33234364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33234365	.	T	.	.	LowGQX	.	GT	./.
chr1	33234366	.	C	.	.	LowGQX	END=33234378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235221	.	A	.	.	LowGQX	END=33235225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235226	.	C	.	.	LowGQX	END=33235227	GT	./.
chr1	33235228	.	T	.	.	LowGQX	END=33235229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235230	.	G	.	.	LowGQX	END=33235231	GT	./.
chr1	33235232	.	G	.	.	LowGQX	END=33235233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235234	.	C	.	.	LowGQX	.	GT	./.
chr1	33235235	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235236	.	T	.	.	LowGQX	.	GT	./.
chr1	33235237	.	T	.	.	LowGQX	END=33235239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235240	.	C	.	.	LowGQX	END=33235241	GT	./.
chr1	33235242	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235243	.	T	.	.	LowGQX	.	GT	./.
chr1	33235244	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235245	.	A	.	.	LowGQX	END=33235247	GT	./.
chr1	33235248	.	G	.	.	LowGQX	END=33235256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235257	.	C	.	.	LowGQX	.	GT	./.
chr1	33235258	.	C	.	.	LowGQX	END=33235260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235261	.	G	.	.	LowGQX	.	GT	./.
chr1	33235262	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235263	.	C	.	.	LowGQX	.	GT	./.
chr1	33235264	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235265	.	G	.	.	LowGQX	.	GT	./.
chr1	33235266	.	G	.	.	LowGQX	END=33235268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235269	.	C	.	.	LowGQX	.	GT	./.
chr1	33235270	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235271	.	C	.	.	LowGQX	END=33235272	GT	./.
chr1	33235273	.	G	.	.	LowGQX	END=33235294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235295	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	33235296	.	C	.	.	LowGQX	END=33235300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33235301	.	T	.	.	LowGQX	.	GT	./.
chr1	33235302	.	T	.	.	LowGQX	END=33235341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33235342	.	C	A	7.08	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=3.54;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:36,3,0:60:3:1.000
chr1	33235343	.	G	.	.	LowGQX	END=33235346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33235347	.	C	.	.	LowGQX	.	GT	./.
chr1	33235348	.	A	.	.	LowGQX	END=33235356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33235357	.	G	.	.	LowGQX	.	GT	./.
chr1	33235358	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33235359	.	A	.	.	LowGQX	.	GT	./.
chr1	33235360	.	C	.	.	LowGQX	END=33235365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235366	.	C	.	.	LowGQX	.	GT	./.
chr1	33235367	.	A	.	.	LowGQX	END=33235372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235373	.	T	.	.	LowGQX	END=33235374	GT	./.
chr1	33235375	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235376	.	A	.	.	LowGQX	.	GT	./.
chr1	33235377	.	G	.	.	LowGQX	END=33235378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235379	.	A	.	.	LowGQX	.	GT	./.
chr1	33235380	.	G	.	.	LowGQX	END=33235384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235385	.	T	.	.	LowGQX	.	GT	./.
chr1	33235386	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235387	.	G	.	.	LowGQX	.	GT	./.
chr1	33235388	.	G	.	.	LowGQX	END=33235389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33235468	.	C	.	.	LowGQX	END=33237202	GT	./.
chr1	33237203	.	C	.	.	LowGQX	END=33237310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33237311	.	C	.	.	LowGQX	END=33237314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	33237315	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:3:60
chr1	33237316	.	A	.	.	LowGQX	END=33237320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	33237321	.	C	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	33237322	.	G	.	.	LowGQX	END=33237344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	33237345	.	C	.	.	LowGQX	END=33237361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	33237362	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr1	33237363	.	G	.	.	LowGQX	END=33237380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	33237381	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr1	33237382	.	G	.	.	LowGQX	END=33237458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	33237459	.	T	.	.	LowGQX	END=33237477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	33237478	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	33237479	.	C	.	.	LowGQX	END=33237487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33237488	.	T	.	.	LowGQX	END=33238044	GT	./.
chr1	33238428	.	A	.	.	LowGQX	END=33238510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33238511	.	T	.	.	LowGQX	END=33238527	GT	./.
chr1	33241531	.	G	.	.	PASS	END=33241622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	33241623	.	A	.	.	PASS	END=33241668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	33241669	.	C	.	.	PASS	END=33241708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	33241709	.	A	.	.	PASS	END=33241743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	33244932	.	G	.	.	PASS	END=33244938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	33244939	.	T	.	.	PASS	END=33244990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	33244991	.	T	.	.	PASS	END=33245074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	33245075	.	C	.	.	PASS	END=33245089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	33245090	.	G	.	.	PASS	END=33245146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	33245147	.	A	.	.	PASS	END=33245156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	33245157	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:57:60
chr1	33245158	.	T	.	.	PASS	END=33245163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	33245164	.	T	.	.	PASS	END=33245175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	33245635	.	A	.	.	PASS	END=33245654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	33245655	.	G	.	.	PASS	END=33245665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	33245666	.	C	.	.	PASS	END=33245691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	33245692	.	G	.	.	PASS	END=33245727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	33245728	.	A	.	.	PASS	END=33245801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:278:99:60
chr1	33245802	.	C	G	4031.35	PASS	BaseQRankSum=4.222;DP=294;Dels=0.00;FS=0.450;HRun=0;HaplotypeScore=22.7261;MQ=60;MQ0=0;MQRankSum=0.549;QD=13.71;ReadPosRankSum=0.573;SB=-2329.64	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:132,161:294:99:4031,0,3007:60:99:0.549
chr1	33245803	.	A	.	.	PASS	END=33245849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	33245850	.	C	.	.	PASS	END=33245878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	33245879	.	G	.	.	PASS	END=33245929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	33245930	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:133:99:60
chr1	33246598	.	G	.	.	PASS	END=33246622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	33246623	.	T	.	.	PASS	END=33246648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	33246649	.	C	.	.	PASS	END=33246673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	33246674	.	A	.	.	PASS	END=33246795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	33246796	.	C	.	.	PASS	END=33246807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	33247954	.	T	.	.	PASS	END=33247967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	33247968	.	C	.	.	PASS	END=33247990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	33247991	.	C	.	.	PASS	END=33248007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	33248008	.	G	.	.	PASS	END=33248025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	33248026	.	A	.	.	PASS	END=33248041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	33248042	.	T	.	.	PASS	END=33248158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	33248159	.	C	.	.	PASS	END=33248180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	33248181	.	C	.	.	PASS	END=33248186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	33248187	.	A	.	.	PASS	END=33248191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	33251912	.	A	.	.	PASS	END=33251935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	33251936	.	A	.	.	PASS	END=33251967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	33251968	.	C	.	.	PASS	END=33252004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	33252005	.	G	.	.	PASS	END=33252099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	33252490	.	C	.	.	PASS	END=33252523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	33252524	.	A	.	.	PASS	END=33252625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	33252626	.	C	.	.	PASS	END=33252674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	33252675	.	T	.	.	PASS	END=33252703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	33252704	.	T	.	.	PASS	END=33252727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	33256712	.	T	.	.	PASS	END=33256804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	33256805	.	C	.	.	PASS	END=33256851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	33256852	.	G	.	.	PASS	END=33256863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	33256864	.	T	.	.	PASS	END=33256883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr1	33256884	.	C	A	822.90	PASS	BaseQRankSum=2.052;DP=47;Dels=0.00;FS=1.311;HRun=0;HaplotypeScore=6.7433;MQ=60;MQ0=0;MQRankSum=0.045;QD=17.51;ReadPosRankSum=-0.379;SB=-218.78	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:19,27:47:99:853,0,456:60:99:0.587
chr1	33256885	.	G	.	.	PASS	END=33256906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	33263313	.	C	.	.	PASS	END=33263321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	33263322	.	T	.	.	PASS	END=33263363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	33263364	.	C	.	.	PASS	END=33263387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	33263388	.	T	.	.	PASS	END=33263470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	33263471	.	A	.	.	PASS	END=33263485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	33272032	.	A	.	.	PASS	END=33272036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	33272037	.	A	.	.	PASS	END=33272039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	33272040	.	A	.	.	PASS	END=33272057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	33272058	.	G	.	.	PASS	END=33272067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	33272068	.	A	.	.	PASS	END=33272096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	33272097	.	A	.	.	PASS	END=33272196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	33272197	.	A	.	.	PASS	END=33272212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	33272213	.	C	.	.	PASS	END=33272238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	33272239	.	C	.	.	PASS	END=33272247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	33272248	.	T	.	.	PASS	END=33272251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	33272252	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:30:60
chr1	33272253	.	C	.	.	PASS	END=33272258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	33272259	.	C	.	.	PASS	END=33272263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	33276141	.	A	.	.	PASS	END=33276156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	33276157	.	A	.	.	PASS	END=33276174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	33276175	.	G	.	.	PASS	END=33276191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	33276192	.	T	.	.	PASS	END=33276209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	33276210	.	G	.	.	PASS	END=33276238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	33276239	.	G	.	.	PASS	END=33276263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	33276264	.	G	.	.	PASS	END=33276382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	33276383	.	G	.	.	PASS	END=33276396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	33276397	.	G	.	.	PASS	END=33276418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	33276461	.	C	.	.	PASS	END=33276489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	33276490	.	G	.	.	PASS	END=33276524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	33276525	.	T	.	.	PASS	END=33276567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	33276568	.	C	.	.	PASS	END=33276629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	33276630	.	T	.	.	PASS	END=33276662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	33276663	.	T	.	.	PASS	END=33276707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	33276708	.	C	.	.	PASS	END=33276709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	33282737	.	G	.	.	PASS	END=33282774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	33282775	.	C	A	1162.66	PASS	BaseQRankSum=1.805;DP=87;Dels=0.00;FS=4.619;HRun=2;HaplotypeScore=14.2038;MQ=60;MQ0=0;MQRankSum=1.616;QD=13.36;ReadPosRankSum=-1.185;SB=-555.24	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:36,51:87:99:1193,0,803:60:99:0.586
chr1	33282776	.	C	.	.	PASS	END=33282838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	33282839	.	C	.	.	PASS	END=33282858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	33282859	.	C	.	.	PASS	END=33282874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:84:60
chr1	33282875	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:63:60
chr1	33282876	.	C	.	.	PASS	END=33282896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	33291699	.	A	.	.	LowGQX	END=33291872	GT	./.
chr1	33291873	.	T	.	.	LowGQX	END=33292071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33292072	.	T	.	.	LowGQX	.	GT	./.
chr1	33292073	.	C	.	.	LowGQX	END=33292104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33292105	.	A	.	.	LowGQX	END=33292259	GT	./.
chr1	33292260	.	G	.	.	LowGQX	END=33292269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33292270	.	A	.	.	LowGQX	.	GT	./.
chr1	33292271	.	A	.	.	LowGQX	END=33292300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33292301	.	A	.	.	LowGQX	.	GT	./.
chr1	33292302	.	G	.	.	LowGQX	END=33292324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33292325	.	G	.	.	LowGQX	.	GT	./.
chr1	33292326	.	G	.	.	LowGQX	END=33292331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33292332	.	A	.	.	LowGQX	.	GT	./.
chr1	33292333	.	G	.	.	LowGQX	END=33292351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33292352	.	A	.	.	LowGQX	.	GT	./.
chr1	33292353	.	A	.	.	LowGQX	END=33292356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33292357	.	T	.	.	LowGQX	.	GT	./.
chr1	33292358	.	C	.	.	LowGQX	END=33292366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33292367	.	G	.	.	LowGQX	.	GT	./.
chr1	33292368	.	T	.	.	LowGQX	END=33292371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33292372	.	T	.	.	LowGQX	.	GT	./.
chr1	33292373	.	G	.	.	LowGQX	END=33292394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33292395	.	A	.	.	LowGQX	.	GT	./.
chr1	33292396	.	G	.	.	LowGQX	END=33292403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33292404	.	C	.	.	LowGQX	END=33292405	GT	./.
chr1	33292406	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33292407	.	C	.	.	LowGQX	END=33292533	GT	./.
chr1	33293589	.	A	.	.	LowGQX	END=33293614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33293615	.	T	.	.	LowGQX	.	GT	./.
chr1	33293616	.	C	.	.	LowGQX	END=33293617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33293618	.	G	.	.	LowGQX	.	GT	./.
chr1	33293619	.	G	.	.	LowGQX	END=33293688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33295563	.	A	.	.	LowGQX	END=33295670	GT	./.
chr1	33299587	.	T	.	.	LowGQX	END=33299686	GT	./.
chr1	33318674	.	T	.	.	LowGQX	END=33318773	GT	./.
chr1	33321523	.	A	.	.	LowGQX	END=33321641	GT	./.
chr1	33329296	.	A	.	.	LowGQX	END=33329395	GT	./.
chr1	33329848	.	C	.	.	LowGQX	END=33329930	GT	./.
chr1	33329931	.	G	.	.	LowGQX	END=33329947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33330210	.	A	.	.	LowGQX	END=33330400	GT	./.
chr1	33333349	.	C	.	.	LowGQX	END=33333375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33333376	.	G	.	.	LowGQX	.	GT	./.
chr1	33333377	.	A	.	.	LowGQX	END=33333396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33333397	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	33333398	.	G	.	.	LowGQX	END=33333448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33333789	.	G	.	.	LowGQX	END=33333808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	33333809	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	33333810	.	C	.	.	LowGQX	END=33333898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33333899	.	A	.	.	LowGQX	END=33333976	GT	./.
chr1	33354498	.	C	.	.	LowGQX	END=33354879	GT	./.
chr1	33359123	.	A	.	.	LowGQX	END=33359232	GT	./.
chr1	33359364	.	A	.	.	LowGQX	END=33359465	GT	./.
chr1	33360394	.	G	.	.	LowGQX	END=33360493	GT	./.
chr1	33360904	.	A	.	.	LowGQX	END=33361042	GT	./.
chr1	33361154	.	A	.	.	LowGQX	END=33361236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33361237	.	T	.	.	LowGQX	.	GT	./.
chr1	33361238	.	G	.	.	LowGQX	END=33361281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33361282	.	G	.	.	LowGQX	.	GT	./.
chr1	33361283	.	C	.	.	LowGQX	END=33361295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33361296	.	T	.	.	LowGQX	.	GT	./.
chr1	33361297	.	C	.	.	LowGQX	END=33361298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33361299	.	G	.	.	LowGQX	.	GT	./.
chr1	33361300	.	A	.	.	LowGQX	END=33361305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33361306	.	G	.	.	LowGQX	.	GT	./.
chr1	33361307	.	A	.	.	LowGQX	END=33361324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33361325	.	G	.	.	LowGQX	END=33361346	GT	./.
chr1	33361491	.	T	.	.	LowGQX	END=33361581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33361582	.	G	T	9.29	LowGQX	BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=0.736;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr1	33361583	.	C	.	.	LowGQX	END=33361590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	33363725	.	A	.	.	LowGQX	END=33363922	GT	./.
chr1	33366722	.	G	.	.	LowGQX	END=33366881	GT	./.
chr1	33402405	.	C	.	.	LowGQX	END=33402512	GT	./.
chr1	33402513	.	G	.	.	LowGQX	END=33402522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33402523	.	A	.	.	LowGQX	.	GT	./.
chr1	33402524	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33402525	.	G	.	.	LowGQX	.	GT	./.
chr1	33402526	.	C	.	.	LowGQX	END=33402546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33402547	.	A	.	.	LowGQX	.	GT	./.
chr1	33402548	.	G	.	.	LowGQX	END=33402554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33402555	.	T	.	.	LowGQX	.	GT	./.
chr1	33402556	.	C	.	.	LowGQX	END=33402593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33402594	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	33402595	.	C	.	.	LowGQX	END=33402628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	33402629	.	C	.	.	LowGQX	.	GT	./.
chr1	33402630	.	T	.	.	LowGQX	END=33402646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	33402647	.	C	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	33402648	.	C	.	.	LowGQX	END=33402652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	33402653	.	T	.	.	LowGQX	.	GT	./.
chr1	33402654	.	T	.	.	LowGQX	END=33402658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	33402659	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	33402660	.	G	.	.	LowGQX	END=33402671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	33402672	.	T	.	.	LowGQX	.	GT	./.
chr1	33402673	.	T	.	.	LowGQX	END=33402690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	33402691	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	33402692	.	T	.	.	LowGQX	END=33402704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	33402705	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	33402706	.	C	.	.	LowGQX	END=33402726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33402727	.	C	.	.	LowGQX	.	GT	./.
chr1	33402728	.	A	.	.	LowGQX	END=33402736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33402737	.	T	.	.	LowGQX	.	GT	./.
chr1	33402738	.	T	.	.	LowGQX	END=33402743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33402744	.	T	.	.	LowGQX	END=33402745	GT	./.
chr1	33402746	.	C	.	.	LowGQX	END=33402762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33402763	.	G	.	.	LowGQX	.	GT	./.
chr1	33402764	.	A	.	.	LowGQX	END=33402768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33402769	.	G	.	.	LowGQX	.	GT	./.
chr1	33402770	.	G	.	.	LowGQX	END=33402773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33402774	.	G	.	.	LowGQX	.	GT	./.
chr1	33402775	.	A	.	.	LowGQX	END=33402783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33402784	.	T	.	.	LowGQX	.	GT	./.
chr1	33402785	.	G	.	.	LowGQX	END=33402786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33402787	.	T	.	.	LowGQX	END=33402949	GT	./.
chr1	33403876	.	A	.	.	LowGQX	END=33403975	GT	./.
chr1	33403996	.	A	.	.	LowGQX	END=33404131	GT	./.
chr1	33407851	.	A	.	.	LowGQX	END=33408062	GT	./.
chr1	33409618	.	A	.	.	LowGQX	END=33409807	GT	./.
chr1	33411113	.	A	.	.	LowGQX	END=33411231	GT	./.
chr1	33412001	.	A	.	.	LowGQX	END=33412167	GT	./.
chr1	33413821	.	A	.	.	LowGQX	END=33413969	GT	./.
chr1	33415168	.	A	.	.	LowGQX	END=33415377	GT	./.
chr1	33429650	.	A	.	.	LowGQX	END=33430290	GT	./.
chr1	33473540	.	C	.	.	PASS	END=33473562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	33473563	.	A	.	.	PASS	END=33473593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	33473594	.	G	.	.	PASS	END=33473632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr1	33473633	.	A	.	.	PASS	END=33473765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:318:99:60
chr1	33473766	.	T	.	.	PASS	END=33473788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:263:99:60
chr1	33473789	.	A	.	.	PASS	END=33473898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	33473899	.	T	.	.	PASS	END=33473994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	33473995	.	T	.	.	PASS	END=33474201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	33474202	.	G	.	.	PASS	END=33474315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	33474316	.	C	.	.	PASS	END=33474394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:279:99:60
chr1	33474395	.	T	.	.	PASS	END=33474510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:349:99:60
chr1	33474511	.	A	.	.	PASS	END=33474645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:371:99:60
chr1	33474646	.	T	.	.	PASS	END=33474675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:284:99:60
chr1	33474676	.	A	.	.	PASS	END=33474703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	33474704	.	G	.	.	PASS	END=33474795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr1	33474796	.	C	.	.	PASS	END=33474905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:268:99:60
chr1	33474906	.	A	.	.	PASS	END=33474991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:334:99:60
chr1	33474992	.	A	.	.	PASS	END=33475312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:423:99:60
chr1	33475313	.	C	.	.	PASS	END=33475425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:344:99:60
chr1	33475426	.	C	T	4543.71	PASS	BaseQRankSum=1.738;DP=356;Dels=0.00;FS=4.763;HRun=0;HaplotypeScore=37.2883;MQ=60;MQ0=0;MQRankSum=1.160;QD=12.76;ReadPosRankSum=-0.155;SB=-787.64	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:190,161:356:99:4544,0,5529:60:99:0.459
chr1	33475427	.	G	.	.	PASS	END=33475529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:332:99:59
chr1	33475530	.	T	.	.	PASS	END=33475582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:424:99:47
chr1	33475583	.	A	.	.	PASS	END=33475638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:526:99:39
chr1	33475639	.	G	A	1148.71	LowQD;SB	BaseQRankSum=6.526;DP=654;Dels=0.00;FS=273.909;HRun=1;HaplotypeScore=34.3353;MQ=39;MQ0=131;MQRankSum=-9.771;QD=1.76;ReadPosRankSum=-4.035;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:483,169:654:99:1179,0,12805:39:99:0.259
chr1	33475640	.	G	.	.	PASS	END=33475649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:664:99:39
chr1	33475650	.	T	C	1167.25	LowQD;SB	BaseQRankSum=1.390;DP=675;Dels=0.00;FS=271.206;HRun=0;HaplotypeScore=31.4338;MQ=39;MQ0=130;MQRankSum=-10.283;QD=1.73;ReadPosRankSum=-2.316;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:500,172:675:99:1197,0,13037:39:99:0.256
chr1	33475651	.	G	.	.	PASS	END=33475686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:674:99:39
chr1	33475687	.	C	G	2295.01	SB	BaseQRankSum=2.167;DP=671;Dels=0.00;FS=146.565;HRun=0;HaplotypeScore=36.2742;MQ=42;MQ0=99;MQRankSum=-12.839;QD=3.42;ReadPosRankSum=-1.699;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:453,216:671:99:2325,0,12181:42:99:0.323
chr1	33475688	.	T	.	.	PASS	END=33475720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:662:99:42
chr1	33475721	.	G	C	3455.60	PASS	BaseQRankSum=0.864;DP=755;Dels=0.00;FS=45.273;HRun=0;HaplotypeScore=46.6156;MQ=48;MQ0=51;MQRankSum=-16.477;QD=4.58;ReadPosRankSum=2.846;SB=-532.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:512,241:755:99:3456,0,14606:48:99:0.320
chr1	33475722	.	T	.	.	PASS	END=33475749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:688:99:48
chr1	33475750	.	A	G	4757.49	PASS	BaseQRankSum=-1.703;DP=747;Dels=0.00;FS=39.256;HRun=2;HaplotypeScore=33.4358;MQ=50;MQ0=40;MQRankSum=-14.088;QD=6.37;ReadPosRankSum=1.675;SB=-810.26	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:477,268:747:99:4757,0,13621:50:99:0.360
chr1	33475751	.	T	.	.	PASS	END=33475766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:708:99:50
chr1	33475767	.	G	A	5636.74	PASS	BaseQRankSum=4.811;DP=732;Dels=0.00;FS=2.671;HRun=0;HaplotypeScore=48.8072;MQ=54;MQ0=17;MQRankSum=-9.332;QD=7.70;ReadPosRankSum=-0.105;SB=-1903.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:454,274:732:99:5637,0,13041:54:99:0.376
chr1	33475768	.	T	.	.	PASS	END=33475790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:719:99:54
chr1	33475791	.	A	G	14408.44	PASS	BaseQRankSum=2.353;DP=816;Dels=0.00;FS=2.903;HRun=0;HaplotypeScore=58.3086;MQ=56;MQ0=0;MQRankSum=-6.248;QD=17.66;ReadPosRankSum=-3.484;SB=-5540.83	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:269,540:816:99:14408,0,5862:56:99:0.667
chr1	33475792	.	A	.	.	PASS	END=33475878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:732:99:56
chr1	33475879	.	C	T	8115.80	PASS	BaseQRankSum=7.423;DP=734;Dels=0.00;FS=8.674;HRun=2;HaplotypeScore=81.8242;MQ=58;MQ0=0;MQRankSum=-1.948;QD=11.06;ReadPosRankSum=0.782;SB=-4545.18	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:402,327:734:99:8116,0,10302:58:99:0.449
chr1	33475880	.	C	.	.	PASS	END=33475929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:565:99:56
chr1	33475930	.	T	.	.	PASS	END=33475966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:502:99:55
chr1	33475967	.	G	A	3681.44	PASS	BaseQRankSum=3.364;DP=567;Dels=0.00;FS=26.015;HRun=0;HaplotypeScore=46.0887;MQ=55;MQ0=0;MQRankSum=-10.442;QD=6.49;ReadPosRankSum=-0.205;SB=-889.43	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:380,186:567:99:3681,0,11238:55:99:0.329
chr1	33475968	.	T	.	.	PASS	END=33475976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:483:99:54
chr1	33475977	.	G	A	2525.44	PASS	BaseQRankSum=5.397;DP=470;Dels=0.00;FS=22.521;HRun=0;HaplotypeScore=40.2514;MQ=54;MQ0=0;MQRankSum=-14.985;QD=5.37;ReadPosRankSum=0.649;SB=-584.04	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:328,137:469:99:2555,0,9664:54:99:0.295
chr1	33475978	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:469:99:54
chr1	33475979	.	A	G	2273.29	PASS	BaseQRankSum=-0.206;DP=470;Dels=0.00;FS=21.442;HRun=2;HaplotypeScore=37.3682;MQ=54;MQ0=0;MQRankSum=-14.958;QD=4.84;ReadPosRankSum=0.502;SB=-498.55	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:333,135:470:99:2303,0,10128:54:99:0.288
chr1	33475980	.	G	.	.	PASS	END=33475981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:470:99:54
chr1	33475982	.	C	A	2699.40	PASS	BaseQRankSum=3.219;DP=491;Dels=0.00;FS=23.376;HRun=1;HaplotypeScore=35.4743;MQ=54;MQ0=0;MQRankSum=-15.017;QD=5.50;ReadPosRankSum=-0.549;SB=-563.88	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:343,147:491:99:2729,0,9984:54:99:0.300
chr1	33475983	.	A	.	.	PASS	END=33476031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:491:99:49
chr1	33476032	.	T	C	2175.85	PASS	BaseQRankSum=2.206;DP=569;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=33.2271;MQ=49;MQ0=23;MQRankSum=-15.897;QD=3.82;ReadPosRankSum=-1.050;SB=-1019.20	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:418,150:569:99:2206,0,11656:49:99:0.264
chr1	33476033	.	G	.	.	PASS	END=33476064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:568:99:49
chr1	33476065	.	G	A	2481.43	PASS	BaseQRankSum=6.322;DP=567;Dels=0.00;FS=3.002;HRun=0;HaplotypeScore=48.4264;MQ=48;MQ0=27;MQRankSum=-15.631;QD=4.38;ReadPosRankSum=0.413;SB=-1097.46	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:411,152:567:99:2511,0,10701:48:99:0.270
chr1	33476066	.	G	.	.	PASS	END=33476073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:531:99:48
chr1	33476074	.	A	T	2169.91	PASS	BaseQRankSum=1.754;DP=529;Dels=0.00;FS=5.305;HRun=1;HaplotypeScore=33.4437;MQ=48;MQ0=27;MQRankSum=-15.077;QD=4.10;ReadPosRankSum=0.906;SB=-874.79	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:387,141:529:99:2200,0,10920:48:99:0.267
chr1	33476075	.	T	.	.	PASS	END=33476089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:512:99:48
chr1	33476090	.	T	C	2096.63	PASS	BaseQRankSum=1.626;DP=547;Dels=0.00;FS=4.523;HRun=0;HaplotypeScore=59.3573;MQ=49;MQ0=27;MQRankSum=-14.724;QD=3.83;ReadPosRankSum=1.516;SB=-749.36	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:409,137:547:99:2127,0,11366:49:99:0.251
chr1	33476091	.	A	.	.	PASS	END=33476142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:446:99:47
chr1	33476143	.	G	A	1955.81	PASS	BaseQRankSum=1.668;DP=451;Dels=0.00;FS=24.473;HRun=1;HaplotypeScore=45.3901;MQ=48;MQ0=19;MQRankSum=-12.318;QD=4.34;ReadPosRankSum=-2.404;SB=-584.99	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:331,117:451:99:1986,0,8788:48:99:0.261
chr1	33476144	.	A	.	.	PASS	END=33476164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:366:99:48
chr1	33476165	.	G	A	1089.87	PASS	BaseQRankSum=1.107;DP=360;Dels=0.00;FS=18.522;HRun=0;HaplotypeScore=85.8770;MQ=53;MQ0=2;MQRankSum=-13.287;QD=3.03;ReadPosRankSum=-0.634;SB=-390.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:274,80:360:99:1120,0,7536:53:99:0.226
chr1	33476166	.	T	.	.	PASS	END=33476223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:360:99:53
chr1	33476223	.	TAC	T	4665.43	PASS	BaseQRankSum=14.623;DP=385;FS=1.053;HRun=0;HaplotypeScore=1643.1555;MQ=56;MQ0=0;MQRankSum=-6.222;QD=12.12;ReadPosRankSum=1.416;SB=-1076.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:256,129:370:99:4665,0,11709:56:99:0.335
chr1	33476224	.	A	.	637.94	PASS	DP=385;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:256:256:99:56:99
chr1	33476225	.	C	.	631.85	PASS	DP=386;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:254:257:99:56:99
chr1	33476226	.	A	.	.	PASS	END=33476238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:355:99:56
chr1	33476239	.	T	C	2739.31	PASS	BaseQRankSum=0.002;DP=356;Dels=0.00;FS=4.930;HRun=1;HaplotypeScore=41.0703;MQ=56;MQ0=0;MQRankSum=-5.671;QD=7.69;ReadPosRankSum=1.776;SB=-538.21	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:224,130:356:99:2769,0,6529:56:99:0.367
chr1	33476240	.	C	.	.	PASS	END=33476291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:316:99:56
chr1	33476292	.	A	G	3266.62	PASS	BaseQRankSum=0.350;DP=316;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=35.2746;MQ=57;MQ0=0;MQRankSum=-5.673;QD=10.34;ReadPosRankSum=-0.602;SB=-484.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:181,135:316:99:3267,0,5264:57:99:0.427
chr1	33476293	.	G	.	.	PASS	END=33476316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:249:99:57
chr1	33476317	.	C	.	.	PASS	END=33476332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:57
chr1	33476333	.	T	.	.	PASS	END=33476338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:57
chr1	33476339	.	T	.	.	PASS	END=33476352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:58
chr1	33476353	.	C	T	1213.42	PASS	BaseQRankSum=1.334;DP=125;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=15.3504;MQ=58;MQ0=0;MQRankSum=-3.509;QD=9.71;ReadPosRankSum=1.761;SB=-217.70	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:74,51:125:99:1243,0,2108:58:99:0.408
chr1	33476354	.	T	.	.	PASS	END=33476373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:57
chr1	33476374	.	A	.	.	PASS	END=33476384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:57
chr1	33476385	.	C	G	667.16	PASS	BaseQRankSum=-0.177;DP=70;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=5.7870;MQ=57;MQ0=0;MQRankSum=-4.008;QD=9.53;ReadPosRankSum=-0.083;SB=-90.53	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:39,31:70:99:697,0,1200:57:99:0.443
chr1	33476386	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:70:99:57
chr1	33476387	.	C	T	638.06	PASS	BaseQRankSum=-1.293;DP=71;Dels=0.00;FS=3.350;HRun=0;HaplotypeScore=5.7870;MQ=57;MQ0=0;MQRankSum=-3.287;QD=8.99;ReadPosRankSum=0.017;SB=-150.79	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:40,31:71:99:668,0,1155:57:99:0.437
chr1	33476388	.	G	.	.	PASS	END=33476395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:57
chr1	33476396	.	G	A	708.19	PASS	BaseQRankSum=1.748;DP=67;Dels=0.00;FS=1.615;HRun=1;HaplotypeScore=13.7306;MQ=57;MQ0=0;MQRankSum=-3.642;QD=10.57;ReadPosRankSum=-0.197;SB=-57.57	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:39,28:67:99:738,0,1075:57:99:0.418
chr1	33476397	.	A	.	.	PASS	END=33476399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:57
chr1	33476400	.	A	.	.	PASS	END=33476402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:58
chr1	33476403	.	G	A	511.78	SB	BaseQRankSum=1.602;DP=48;Dels=0.00;FS=5.755;HRun=0;HaplotypeScore=12.7836;MQ=58;MQ0=0;MQRankSum=1.138;QD=10.66;ReadPosRankSum=0.084;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:29,19:48:99:542,0,808:58:99:0.396
chr1	33476404	.	T	G	382.48	PASS	BaseQRankSum=-0.273;DP=47;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=12.7836;MQ=58;MQ0=0;MQRankSum=-1.297;QD=8.14;ReadPosRankSum=-0.228;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:29,17:47:99:412,0,918:58:99:0.370
chr1	33476405	.	T	.	.	PASS	END=33476409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:57
chr1	33476410	.	T	.	.	PASS	END=33476414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:56
chr1	33476415	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:39:57
chr1	33476416	.	C	.	.	PASS	END=33476424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:57
chr1	33476425	.	T	.	.	PASS	END=33476431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:56
chr1	33476432	.	A	.	.	PASS	END=33476434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:56
chr1	33476435	.	C	.	.	LowGQX	END=33476436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:60
chr1	33476437	.	G	.	.	PASS	END=33476444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	33476445	.	G	.	.	PASS	END=33476458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	33476459	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	33476460	.	A	.	.	PASS	END=33476467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	33476468	.	G	.	.	LowGQX	END=33476469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	33476470	.	G	.	.	PASS	END=33476472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	33476473	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	33476474	.	T	.	.	PASS	END=33476485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	33476825	.	A	.	.	PASS	END=33476862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	33476863	.	C	.	.	PASS	END=33476887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	33476888	.	C	.	.	PASS	END=33476914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	33476915	.	C	.	.	PASS	END=33476948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	33476949	.	T	.	.	PASS	END=33477112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	33477113	.	A	.	.	PASS	END=33477149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	33477150	.	G	.	.	PASS	END=33477204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	33477205	.	T	.	.	PASS	END=33477371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:262:99:60
chr1	33477372	.	T	.	.	PASS	END=33477468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:278:99:60
chr1	33477469	.	A	.	.	PASS	END=33477534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	33477535	.	C	.	.	PASS	END=33477582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	33477583	.	T	.	.	PASS	END=33477711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	33477712	.	C	.	.	PASS	END=33477827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	33477828	.	T	.	.	PASS	END=33477933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	33477934	.	T	.	.	PASS	END=33477994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	33477995	.	T	.	.	PASS	END=33478059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	33478060	.	T	.	.	PASS	END=33478245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	33478246	.	C	.	.	PASS	END=33478432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	33478433	.	A	.	.	PASS	END=33478456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	33478457	.	C	.	.	PASS	END=33478475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	33478476	.	G	.	.	PASS	END=33478608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:60
chr1	33478609	.	C	.	.	PASS	END=33478663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:345:99:60
chr1	33478664	.	T	.	.	PASS	END=33478774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:442:99:60
chr1	33478775	.	C	.	.	PASS	END=33478826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:337:99:60
chr1	33478827	.	T	.	.	PASS	END=33478860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:252:99:60
chr1	33478861	.	T	.	.	PASS	END=33478876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	33478877	.	C	.	.	PASS	END=33478905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	33478906	.	T	.	.	PASS	END=33478913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	33478914	.	T	.	.	PASS	END=33478928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	33478929	.	G	.	.	PASS	END=33478937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	33478938	.	T	.	.	PASS	END=33478981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	33478982	.	G	.	.	PASS	END=33478999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	33479000	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:30:60
chr1	33479001	.	G	.	.	PASS	END=33479010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	33479011	.	C	.	.	PASS	END=33479020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	33479021	.	G	.	.	PASS	END=33479023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	33479024	.	A	.	.	PASS	END=33479032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	33479033	.	T	.	.	PASS	END=33479035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	33479036	.	G	.	.	PASS	END=33479039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	33479040	.	G	.	.	PASS	END=33479049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	33479050	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:33:60
chr1	33479051	.	T	.	.	PASS	END=33479053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	33479054	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:21:60
chr1	33480072	.	G	.	.	PASS	END=33480113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	33480114	.	T	.	.	PASS	END=33480171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	33480172	.	C	.	.	PASS	END=33480197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:59
chr1	33480198	.	G	.	.	PASS	END=33480236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	33480237	.	T	.	.	PASS	END=33480246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	33485681	.	G	.	.	LowGQX	END=33485780	GT	./.
chr1	33486917	.	G	.	.	PASS	END=33486937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	33486938	.	C	.	.	PASS	END=33487019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	33487020	.	C	.	.	PASS	END=33487077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	33487078	.	T	.	.	PASS	END=33487111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	33487112	.	C	.	.	PASS	END=33487113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	33487143	.	G	.	.	PASS	END=33487178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	33487179	.	A	.	.	PASS	END=33487212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	33487213	.	G	.	.	PASS	END=33487299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	33487300	.	C	.	.	PASS	END=33487324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:87:60
chr1	33487325	.	A	.	.	PASS	END=33487348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	33487349	.	T	.	.	PASS	END=33487354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	33487355	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:75:60
chr1	33489992	.	C	.	.	PASS	END=33490008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	33490009	.	G	.	.	PASS	END=33490033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	33490034	.	C	.	.	PASS	END=33490078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	33490079	.	T	.	.	PASS	END=33490136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	33490137	.	C	.	.	PASS	END=33490180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	33490181	.	A	.	.	PASS	END=33490219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	33497144	.	C	.	.	PASS	END=33497188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	33497189	.	A	.	.	PASS	END=33497208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	33497209	.	A	.	.	PASS	END=33497270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	33497271	.	G	.	.	PASS	END=33497296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	33502286	.	T	.	.	PASS	END=33502323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	33502324	.	T	.	.	PASS	END=33502353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	33502354	.	C	.	.	PASS	END=33502466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	33502467	.	C	.	.	PASS	END=33502482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	33502483	.	T	.	.	PASS	END=33502511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	33502512	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:114:99:60
chr1	33547798	.	G	.	.	PASS	END=33547852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	33547853	.	G	.	.	PASS	END=33547929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	33547930	.	C	.	.	PASS	END=33547957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	33549519	.	A	.	.	PASS	END=33549558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	33549559	.	A	.	.	PASS	END=33549586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:274:99:60
chr1	33549587	.	G	.	.	PASS	END=33549686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:325:99:60
chr1	33549687	.	G	.	.	PASS	END=33549716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:60
chr1	33549717	.	T	.	.	PASS	END=33549730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	33557649	.	A	.	.	PASS	END=33557664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	33557665	.	G	.	.	PASS	END=33557707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	33557708	.	A	.	.	PASS	END=33557804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	33557805	.	A	.	.	PASS	END=33557823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	33557824	.	G	.	.	PASS	END=33557825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	33558846	.	G	.	.	PASS	END=33558858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	33558859	.	G	.	.	PASS	END=33558867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	33558868	.	T	.	.	PASS	END=33558902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	33558903	.	C	.	.	PASS	END=33559011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	33559012	.	T	.	.	PASS	END=33559019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	33560147	.	A	.	.	PASS	END=33560181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	33560182	.	G	.	.	PASS	END=33560241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr1	33560242	.	T	.	.	PASS	END=33560316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:279:99:60
chr1	33562306	.	A	.	.	PASS	END=33562328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	33562329	.	G	.	.	PASS	END=33562344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	33562345	.	T	.	.	PASS	END=33562472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	33563607	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:99:60
chr1	33563608	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:69:60
chr1	33563609	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:99:60
chr1	33563610	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:63:60
chr1	33563611	.	C	.	.	PASS	END=33563643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:96:60
chr1	33563644	.	C	.	.	PASS	END=33563684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	33563685	.	T	.	.	PASS	END=33563751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	33563752	.	A	.	.	PASS	END=33563782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	33567414	.	T	.	.	LowGQX	END=33567513	GT	./.
chr1	33583430	.	G	.	.	PASS	END=33583453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	33583454	.	G	.	.	PASS	END=33583471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	33583472	.	G	.	.	PASS	END=33583494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	33583495	.	T	.	.	PASS	END=33583520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	33583521	.	C	.	.	PASS	END=33583627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	33583628	.	C	.	.	PASS	END=33583645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	33583646	.	T	.	.	PASS	END=33583658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	33583659	.	T	.	.	PASS	END=33583675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	33583676	.	C	.	.	PASS	END=33583706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	33583707	.	C	.	.	PASS	END=33583724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	33583725	.	G	.	.	PASS	END=33583729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	33583730	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:75:60
chr1	33583731	.	G	.	.	PASS	END=33583747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	33583748	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:72:60
chr1	33583749	.	G	.	.	PASS	END=33583784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	33583785	.	T	.	.	PASS	END=33583787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:72:60
chr1	33583788	.	G	.	.	PASS	END=33583789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	33585612	.	T	.	.	PASS	END=33585646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	33585647	.	A	.	.	PASS	END=33585755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr1	33585756	.	T	.	.	PASS	END=33585785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	33611434	.	C	.	.	LowGQX	END=33611533	GT	./.
chr1	33612776	.	G	.	.	LowGQX	END=33613191	GT	./.
chr1	33613192	.	C	.	.	LowGQX	END=33613270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33613271	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	33613272	.	C	.	.	LowGQX	END=33613292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33613293	.	G	.	.	LowGQX	END=33613294	GT	./.
chr1	33613295	.	G	.	.	LowGQX	END=33613296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33613297	.	T	.	.	LowGQX	.	GT	./.
chr1	33613298	.	G	.	.	LowGQX	END=33613301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33613302	.	C	.	.	LowGQX	.	GT	./.
chr1	33613303	.	C	.	.	LowGQX	END=33613304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33613305	.	G	.	.	LowGQX	.	GT	./.
chr1	33613306	.	G	.	.	LowGQX	END=33613309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33613310	.	A	.	.	LowGQX	.	GT	./.
chr1	33613311	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33613312	.	G	.	.	LowGQX	.	GT	./.
chr1	33613313	.	G	.	.	LowGQX	END=33613319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33613320	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	33613321	.	G	.	.	LowGQX	END=33613330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33623852	.	A	.	.	LowGQX	END=33623885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33623886	.	A	.	.	LowGQX	.	GT	./.
chr1	33623887	.	T	.	.	LowGQX	END=33623971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33625287	.	A	.	.	LowGQX	END=33625398	GT	./.
chr1	33625399	.	G	.	.	LowGQX	END=33625510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33625511	.	T	.	.	LowGQX	.	GT	./.
chr1	33625512	.	C	.	.	LowGQX	END=33625531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33625532	.	C	.	.	LowGQX	END=33625547	GT	./.
chr1	33631070	.	A	.	.	LowGQX	END=33631164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33631165	.	C	.	.	LowGQX	.	GT	./.
chr1	33631166	.	C	.	.	LowGQX	END=33631169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33641981	.	T	.	.	LowGQX	END=33641982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33641983	.	T	.	.	LowGQX	.	GT	./.
chr1	33641984	.	C	.	.	LowGQX	END=33641985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33641986	.	C	.	.	LowGQX	END=33641987	GT	./.
chr1	33641988	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33641989	.	G	.	.	LowGQX	END=33641990	GT	./.
chr1	33641991	.	T	.	.	LowGQX	END=33641999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33642000	.	C	.	.	LowGQX	END=33642080	GT	./.
chr1	33646624	.	A	.	.	LowGQX	END=33647035	GT	./.
chr1	33736145	.	A	.	.	LowGQX	END=33736148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33736149	.	G	.	.	LowGQX	.	GT	./.
chr1	33736150	.	G	.	.	LowGQX	END=33736155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33736156	.	C	.	.	LowGQX	.	GT	./.
chr1	33736157	.	T	.	.	LowGQX	END=33736158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33736159	.	G	.	.	LowGQX	.	GT	./.
chr1	33736160	.	A	.	.	LowGQX	END=33736172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33736173	.	A	.	.	LowGQX	.	GT	./.
chr1	33736174	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33736175	.	G	.	.	LowGQX	.	GT	./.
chr1	33736176	.	A	.	.	LowGQX	END=33736178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33736179	.	A	.	.	LowGQX	.	GT	./.
chr1	33736180	.	G	.	.	LowGQX	END=33736190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33736191	.	C	.	.	LowGQX	.	GT	./.
chr1	33736192	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33736193	.	A	.	.	LowGQX	END=33736194	GT	./.
chr1	33736195	.	G	.	.	LowGQX	END=33736198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33736199	.	G	.	.	LowGQX	END=33736202	GT	./.
chr1	33736203	.	G	.	.	LowGQX	END=33736209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33736210	.	C	.	.	LowGQX	.	GT	./.
chr1	33736211	.	T	.	.	LowGQX	END=33736212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33736213	.	G	.	.	LowGQX	END=33736214	GT	./.
chr1	33736215	.	T	.	.	LowGQX	END=33736216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33736217	.	A	.	.	LowGQX	.	GT	./.
chr1	33736218	.	G	.	.	LowGQX	END=33736222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33736223	.	C	.	.	LowGQX	.	GT	./.
chr1	33736224	.	T	.	.	LowGQX	END=33736226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33736227	.	G	.	.	LowGQX	.	GT	./.
chr1	33736228	.	A	.	.	LowGQX	END=33736231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33736232	.	C	.	.	LowGQX	END=33736244	GT	./.
chr1	33741683	.	G	.	.	LowGQX	END=33741782	GT	./.
chr1	33741947	.	A	.	.	LowGQX	END=33741954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33741955	.	A	.	.	LowGQX	END=33742197	GT	./.
chr1	33745723	.	A	.	.	LowGQX	END=33745724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33745725	.	G	.	.	LowGQX	.	GT	./.
chr1	33745726	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33745727	.	C	.	.	LowGQX	.	GT	./.
chr1	33745728	.	T	.	.	LowGQX	END=33745729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33745730	.	G	.	.	LowGQX	END=33745731	GT	./.
chr1	33745732	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	33745733	.	C	.	.	LowGQX	END=33745734	GT	./.
chr1	33745735	.	G	.	.	LowGQX	END=33745742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33745743	.	G	.	.	LowGQX	.	GT	./.
chr1	33745744	.	G	.	.	LowGQX	END=33745746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33745747	.	C	.	.	LowGQX	.	GT	./.
chr1	33745748	.	C	.	.	LowGQX	END=33745753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33745754	.	G	.	.	LowGQX	.	GT	./.
chr1	33745755	.	T	.	.	LowGQX	END=33745763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33745764	.	C	.	.	LowGQX	.	GT	./.
chr1	33745765	.	T	.	.	LowGQX	END=33745767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33745768	.	G	.	.	LowGQX	END=33745770	GT	./.
chr1	33745771	.	A	.	.	LowGQX	END=33745772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33745773	.	G	.	.	LowGQX	END=33745774	GT	./.
chr1	33745775	.	G	.	.	LowGQX	END=33745778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33745779	.	G	.	.	LowGQX	END=33745780	GT	./.
chr1	33745781	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33745782	.	C	.	.	LowGQX	.	GT	./.
chr1	33745783	.	G	.	.	LowGQX	END=33745784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33745785	.	G	.	.	LowGQX	END=33745787	GT	./.
chr1	33745788	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33745789	.	G	.	.	LowGQX	END=33746060	GT	./.
chr1	33747186	.	A	.	.	LowGQX	END=33747204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33747205	.	T	.	.	LowGQX	END=33747414	GT	./.
chr1	33760528	.	C	.	.	LowGQX	END=33760627	GT	./.
chr1	33760746	.	A	.	.	LowGQX	END=33760908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33764529	.	A	.	.	LowGQX	END=33764535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	33764536	.	C	.	.	LowGQX	END=33764537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33764538	.	A	.	.	LowGQX	END=33764564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	33764565	.	C	.	.	LowGQX	END=33764587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	33764588	.	C	.	.	LowGQX	END=33764595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	33764596	.	G	.	3.15	LowGQX	DP=7;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:7:0:60:0
chr1	33764597	.	C	.	.	LowGQX	END=33764602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	33764603	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	33764604	.	G	.	.	LowGQX	END=33764609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	33764610	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	33764611	.	G	.	.	LowGQX	END=33764612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	33764613	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	33764614	.	C	.	.	LowGQX	END=33764618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	33764619	.	G	.	.	LowGQX	END=33764623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	33764624	.	C	.	.	LowGQX	END=33764628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	33764629	.	G	.	.	LowGQX	END=33764649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	33772367	.	C	.	.	LowGQX	END=33773054	GT	./.
chr1	33777653	.	C	.	.	LowGQX	END=33777666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33777667	.	G	.	.	LowGQX	.	GT	./.
chr1	33777668	.	A	.	.	LowGQX	END=33777674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33777675	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	33777676	.	C	.	.	LowGQX	END=33777681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33777682	.	G	.	.	LowGQX	.	GT	./.
chr1	33777683	.	G	.	.	LowGQX	END=33777694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33777695	.	T	.	.	LowGQX	END=33777790	GT	./.
chr1	33778097	.	C	.	.	LowGQX	END=33778196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33778400	.	G	.	.	LowGQX	END=33778406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33778407	.	C	.	.	LowGQX	.	GT	./.
chr1	33778408	.	C	.	.	LowGQX	END=33778425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33778426	.	T	.	.	LowGQX	.	GT	./.
chr1	33778427	.	A	.	.	LowGQX	END=33778433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33778434	.	C	.	.	LowGQX	.	GT	./.
chr1	33778435	.	A	.	.	LowGQX	END=33778437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33778438	.	C	.	.	LowGQX	END=33778451	GT	./.
chr1	33778452	.	T	.	.	LowGQX	END=33778458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33778459	.	A	.	.	LowGQX	.	GT	./.
chr1	33778460	.	G	.	.	LowGQX	END=33778482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33778483	.	T	.	.	LowGQX	.	GT	./.
chr1	33778484	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33778485	.	C	.	.	LowGQX	.	GT	./.
chr1	33778486	.	C	.	.	LowGQX	END=33778499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33786639	.	C	.	.	LowGQX	END=33786707	GT	./.
chr1	33786708	.	G	.	.	LowGQX	END=33786738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33790464	.	C	.	.	LowGQX	END=33790472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33790473	.	T	.	.	LowGQX	END=33790522	GT	./.
chr1	33790523	.	G	.	.	LowGQX	END=33790622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33791425	.	T	.	.	LowGQX	END=33791562	GT	./.
chr1	33794469	.	A	.	.	LowGQX	END=33794479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33794480	.	A	.	.	LowGQX	.	GT	./.
chr1	33794481	.	G	.	.	LowGQX	END=33794514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33794515	.	T	.	.	LowGQX	.	GT	./.
chr1	33794516	.	T	.	.	LowGQX	END=33794517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33794518	.	G	.	.	LowGQX	.	GT	./.
chr1	33794519	.	T	.	.	LowGQX	END=33794521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33794522	.	G	.	.	LowGQX	.	GT	./.
chr1	33794523	.	C	.	.	LowGQX	END=33794532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33794533	.	A	.	.	LowGQX	.	GT	./.
chr1	33794534	.	G	.	.	LowGQX	END=33794536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33794537	.	A	.	.	LowGQX	.	GT	./.
chr1	33794538	.	G	.	.	LowGQX	END=33794543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33794544	.	T	.	.	LowGQX	.	GT	./.
chr1	33794545	.	C	.	.	LowGQX	END=33794547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33794548	.	A	.	.	LowGQX	.	GT	./.
chr1	33794549	.	T	.	.	LowGQX	END=33794550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33794551	.	C	.	.	LowGQX	END=33794749	GT	./.
chr1	33795670	.	A	.	.	LowGQX	END=33795815	GT	./.
chr1	33796947	.	A	.	.	LowGQX	.	GT	./.
chr1	33796948	.	C	.	.	LowGQX	END=33796956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33796957	.	A	.	.	LowGQX	.	GT	./.
chr1	33796958	.	C	.	.	LowGQX	END=33796983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33796984	.	A	.	.	LowGQX	.	GT	./.
chr1	33796985	.	C	.	.	LowGQX	END=33796990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33796991	.	A	.	.	LowGQX	.	GT	./.
chr1	33796992	.	A	.	.	LowGQX	END=33797065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33797874	.	A	.	.	LowGQX	END=33798007	GT	./.
chr1	33799619	.	G	.	.	LowGQX	END=33799958	GT	./.
chr1	33815165	.	T	.	.	LowGQX	END=33815177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33815178	.	T	.	.	LowGQX	.	GT	./.
chr1	33815179	.	C	.	.	LowGQX	END=33815239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33815240	.	A	.	.	LowGQX	END=33815522	GT	./.
chr1	33820000	.	A	.	.	LowGQX	END=33820039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33820040	.	A	.	.	LowGQX	END=33820169	GT	./.
chr1	33820438	.	C	.	.	LowGQX	END=33820517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33820518	.	T	.	.	LowGQX	.	GT	./.
chr1	33820519	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33820520	.	G	.	.	LowGQX	.	GT	./.
chr1	33820521	.	G	.	.	LowGQX	END=33820559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33820560	.	T	.	.	LowGQX	.	GT	./.
chr1	33820561	.	G	.	.	LowGQX	END=33820570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33820571	.	A	.	.	LowGQX	END=33820727	GT	./.
chr1	33820728	.	G	.	.	LowGQX	END=33820751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33820752	.	T	.	.	LowGQX	.	GT	./.
chr1	33820753	.	G	.	.	LowGQX	END=33820781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33820782	.	A	.	.	LowGQX	.	GT	./.
chr1	33820783	.	T	.	.	LowGQX	END=33820797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33820798	.	G	.	.	LowGQX	.	GT	./.
chr1	33820799	.	C	.	.	LowGQX	END=33820846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33820847	.	A	.	.	LowGQX	.	GT	./.
chr1	33820848	.	G	.	.	LowGQX	END=33820849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33820850	.	A	.	.	LowGQX	.	GT	./.
chr1	33820851	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33820852	.	A	.	.	LowGQX	.	GT	./.
chr1	33820853	.	G	.	.	LowGQX	END=33820856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33832715	.	A	.	.	LowGQX	END=33833031	GT	./.
chr1	33834131	.	C	.	.	LowGQX	END=33834283	GT	./.
chr1	33836020	.	A	.	.	LowGQX	END=33836047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33836048	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	33836049	.	T	.	.	LowGQX	END=33836146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33836147	.	T	.	.	LowGQX	.	GT	./.
chr1	33836148	.	G	.	.	LowGQX	END=33836159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33836160	.	T	.	.	LowGQX	.	GT	./.
chr1	33836161	.	G	.	.	LowGQX	END=33836185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33836186	.	T	.	.	LowGQX	.	GT	./.
chr1	33836187	.	C	.	.	LowGQX	END=33836188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33836607	.	A	.	.	LowGQX	END=33836706	GT	./.
chr1	33837888	.	A	.	.	LowGQX	END=33838010	GT	./.
chr1	33838011	.	G	.	.	LowGQX	END=33838050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33840965	.	A	.	.	LowGQX	END=33841142	GT	./.
chr1	33944888	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33944889	.	A	.	.	LowGQX	END=33945308	GT	./.
chr1	33954052	.	T	.	.	LowGQX	END=33954262	GT	./.
chr1	33954704	.	C	.	.	LowGQX	END=33954707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33954708	.	T	.	.	LowGQX	.	GT	./.
chr1	33954709	.	C	.	.	LowGQX	END=33954714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33954715	.	C	.	.	LowGQX	END=33954803	GT	./.
chr1	33955111	.	C	.	.	LowGQX	END=33955210	GT	./.
chr1	33956623	.	A	.	.	LowGQX	END=33956785	GT	./.
chr1	33956786	.	G	.	.	LowGQX	END=33956797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956798	.	T	.	.	LowGQX	END=33956800	GT	./.
chr1	33956801	.	G	.	.	LowGQX	END=33956802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956803	.	T	.	.	LowGQX	END=33956805	GT	./.
chr1	33956806	.	G	.	.	LowGQX	END=33956818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956819	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	33956820	.	T	.	.	LowGQX	END=33956827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956828	.	G	.	.	LowGQX	.	GT	./.
chr1	33956829	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956830	.	T	.	.	LowGQX	.	GT	./.
chr1	33956831	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956832	.	A	.	.	LowGQX	.	GT	./.
chr1	33956833	.	C	.	.	LowGQX	END=33956836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956837	.	G	.	.	LowGQX	END=33956838	GT	./.
chr1	33956839	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956840	.	T	.	.	LowGQX	.	GT	./.
chr1	33956841	.	A	.	.	LowGQX	END=33956846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956847	.	A	.	.	LowGQX	.	GT	./.
chr1	33956848	.	G	.	.	LowGQX	END=33956858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956859	.	T	.	.	LowGQX	.	GT	./.
chr1	33956860	.	C	.	.	LowGQX	END=33956862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956863	.	G	.	.	LowGQX	.	GT	./.
chr1	33956864	.	G	.	.	LowGQX	END=33956868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956869	.	T	.	.	LowGQX	.	GT	./.
chr1	33956870	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956871	.	T	.	.	LowGQX	.	GT	./.
chr1	33956872	.	G	.	.	LowGQX	END=33956875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956876	.	G	.	.	LowGQX	END=33956877	GT	./.
chr1	33956878	.	A	.	.	LowGQX	END=33956882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956883	.	C	.	.	LowGQX	.	GT	./.
chr1	33956884	.	T	.	.	LowGQX	END=33956887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956888	.	T	.	.	LowGQX	.	GT	./.
chr1	33956889	.	C	.	.	LowGQX	END=33956900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956901	.	G	.	.	LowGQX	.	GT	./.
chr1	33956902	.	G	.	.	LowGQX	END=33956907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956908	.	T	.	.	LowGQX	.	GT	./.
chr1	33956909	.	C	.	.	LowGQX	END=33956915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956916	.	A	.	.	LowGQX	.	GT	./.
chr1	33956917	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956918	.	C	.	.	LowGQX	END=33956919	GT	./.
chr1	33956920	.	C	.	.	LowGQX	END=33956922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956923	.	G	.	.	LowGQX	.	GT	./.
chr1	33956924	.	G	.	.	LowGQX	END=33956929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956930	.	C	.	.	LowGQX	.	GT	./.
chr1	33956931	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956932	.	G	.	.	LowGQX	END=33956933	GT	./.
chr1	33956934	.	C	.	.	LowGQX	END=33956942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956943	.	A	.	.	LowGQX	.	GT	./.
chr1	33956944	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956945	.	C	.	.	LowGQX	END=33956946	GT	./.
chr1	33956947	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956948	.	C	.	.	LowGQX	.	GT	./.
chr1	33956949	.	T	.	.	LowGQX	END=33956952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956953	.	G	.	.	LowGQX	END=33956955	GT	./.
chr1	33956956	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956957	.	A	.	.	LowGQX	.	GT	./.
chr1	33956958	.	G	.	.	LowGQX	END=33956959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956960	.	G	.	.	LowGQX	.	GT	./.
chr1	33956961	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956962	.	C	.	.	LowGQX	.	GT	./.
chr1	33956963	.	T	.	.	LowGQX	END=33956965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956966	.	C	.	.	LowGQX	END=33956967	GT	./.
chr1	33956968	.	G	.	.	LowGQX	END=33956970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956971	.	G	.	.	LowGQX	.	GT	./.
chr1	33956972	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956973	.	C	.	.	LowGQX	END=33956974	GT	./.
chr1	33956975	.	C	.	.	LowGQX	END=33956976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956977	.	G	.	.	LowGQX	END=33956979	GT	./.
chr1	33956980	.	G	.	.	LowGQX	END=33956981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956982	.	A	.	.	LowGQX	END=33956983	GT	./.
chr1	33956984	.	T	.	.	LowGQX	END=33956985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956986	.	T	.	.	LowGQX	.	GT	./.
chr1	33956987	.	C	.	.	LowGQX	END=33956989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956990	.	T	.	.	LowGQX	.	GT	./.
chr1	33956991	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956992	.	T	.	.	LowGQX	.	GT	./.
chr1	33956993	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956994	.	G	.	.	LowGQX	END=33956995	GT	./.
chr1	33956996	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33956997	.	T	.	.	LowGQX	.	GT	./.
chr1	33956998	.	C	.	.	LowGQX	END=33957002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33957003	.	A	.	.	LowGQX	.	GT	./.
chr1	33957004	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33957005	.	C	.	.	LowGQX	.	GT	./.
chr1	33957006	.	T	.	.	LowGQX	END=33957008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33957009	.	T	.	.	LowGQX	.	GT	./.
chr1	33957010	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33957011	.	C	.	.	LowGQX	END=33957012	GT	./.
chr1	33957013	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33957014	.	A	.	.	LowGQX	.	GT	./.
chr1	33957015	.	A	.	.	LowGQX	END=33957018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33957019	.	C	.	.	LowGQX	END=33957020	GT	./.
chr1	33957021	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33957022	.	G	.	.	LowGQX	.	GT	./.
chr1	33957023	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33957024	.	A	.	.	LowGQX	END=33957025	GT	./.
chr1	33957026	.	G	.	.	LowGQX	END=33957027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33957028	.	C	.	.	LowGQX	END=33957029	GT	./.
chr1	33957030	.	A	.	.	LowGQX	END=33957031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33957032	.	A	.	.	LowGQX	.	GT	./.
chr1	33957033	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33957034	.	C	.	.	LowGQX	.	GT	./.
chr1	33957035	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33957036	.	G	.	.	LowGQX	.	GT	./.
chr1	33957037	.	C	.	.	LowGQX	END=33957039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33957040	.	C	.	.	LowGQX	.	GT	./.
chr1	33957041	.	C	.	.	LowGQX	END=33957049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33957050	.	A	.	.	LowGQX	.	GT	./.
chr1	33957051	.	C	.	.	LowGQX	END=33957062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33957063	.	A	.	.	LowGQX	.	GT	./.
chr1	33957064	.	T	.	.	LowGQX	END=33957085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33957086	.	A	.	.	LowGQX	END=33957322	GT	./.
chr1	33958785	.	A	.	.	LowGQX	END=33959005	GT	./.
chr1	33959006	.	C	.	.	LowGQX	END=33959025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33959026	.	T	.	.	LowGQX	.	GT	./.
chr1	33959027	.	A	.	.	LowGQX	END=33959090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33959091	.	G	.	.	LowGQX	.	GT	./.
chr1	33959092	.	G	.	.	LowGQX	END=33959100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33959101	.	C	.	.	LowGQX	.	GT	./.
chr1	33959102	.	T	.	.	LowGQX	END=33959130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33959131	.	A	.	.	LowGQX	.	GT	./.
chr1	33959132	.	C	.	.	LowGQX	END=33959153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33959154	.	T	.	.	LowGQX	.	GT	./.
chr1	33959155	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33959156	.	A	.	.	LowGQX	END=33959212	GT	./.
chr1	33959213	.	T	.	.	LowGQX	END=33959215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33959216	.	G	.	.	LowGQX	END=33959217	GT	./.
chr1	33959816	.	A	.	.	LowGQX	END=33959930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33959931	.	T	.	.	LowGQX	END=33960720	GT	./.
chr1	33960721	.	C	.	.	LowGQX	END=33960856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33960857	.	T	.	.	LowGQX	.	GT	./.
chr1	33960858	.	T	.	.	LowGQX	END=33960872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33960873	.	C	.	.	LowGQX	.	GT	./.
chr1	33960874	.	A	.	.	LowGQX	END=33960882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33960883	.	T	.	.	LowGQX	END=33960884	GT	./.
chr1	33960885	.	C	.	.	LowGQX	END=33960888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33960889	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	33960890	.	G	.	.	LowGQX	END=33960942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33960943	.	C	.	.	LowGQX	END=33960974	GT	./.
chr1	33960975	.	G	.	.	LowGQX	END=33961078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33985116	.	G	.	.	LowGQX	END=33985123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33985124	.	T	.	.	LowGQX	END=33985279	GT	./.
chr1	33985410	.	A	.	.	LowGQX	END=33985552	GT	./.
chr1	33987057	.	A	.	.	LowGQX	END=33987152	GT	./.
chr1	33987153	.	G	.	.	LowGQX	END=33987156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33988905	.	A	.	.	LowGQX	END=33988932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33988933	.	C	.	.	LowGQX	.	GT	./.
chr1	33988934	.	T	.	.	LowGQX	END=33988941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33988942	.	T	.	.	LowGQX	.	GT	./.
chr1	33988943	.	A	.	.	LowGQX	END=33988947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33988948	.	T	.	.	LowGQX	.	GT	./.
chr1	33988949	.	A	.	.	LowGQX	END=33988955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33988956	.	T	.	.	LowGQX	.	GT	./.
chr1	33988957	.	C	.	.	LowGQX	END=33988958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33988959	.	A	.	.	LowGQX	.	GT	./.
chr1	33988960	.	C	.	.	LowGQX	END=33988965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33988966	.	C	.	.	LowGQX	.	GT	./.
chr1	33988967	.	T	.	.	LowGQX	END=33988971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33988972	.	T	.	.	LowGQX	.	GT	./.
chr1	33988973	.	C	.	.	LowGQX	END=33988981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33988982	.	C	.	.	LowGQX	.	GT	./.
chr1	33988983	.	T	.	.	LowGQX	END=33988992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33988993	.	G	.	.	LowGQX	.	GT	./.
chr1	33988994	.	A	.	.	LowGQX	END=33988995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33988996	.	G	.	.	LowGQX	.	GT	./.
chr1	33988997	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33988998	.	A	.	.	LowGQX	.	GT	./.
chr1	33988999	.	A	.	.	LowGQX	END=33989013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33989014	.	A	.	.	LowGQX	END=33989021	GT	./.
chr1	33990480	.	A	.	.	LowGQX	END=33990645	GT	./.
chr1	33992718	.	A	.	.	LowGQX	END=33992727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	33992728	.	G	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.66;ReadPosRankSum=-0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:30.11:33,0,30:60:5:0.667
chr1	33992729	.	T	.	.	LowGQX	END=33992814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	33992815	.	T	.	.	LowGQX	.	GT	./.
chr1	33992816	.	G	.	.	LowGQX	END=33992867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	33992868	.	A	.	.	LowGQX	END=33992877	GT	./.
chr1	33998648	.	A	.	.	LowGQX	END=33998847	GT	./.
chr1	33999394	.	A	.	.	LowGQX	END=33999509	GT	./.
chr1	34002609	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34002610	.	T	.	.	LowGQX	.	GT	./.
chr1	34002611	.	G	.	.	LowGQX	END=34002630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34002631	.	C	.	.	LowGQX	.	GT	./.
chr1	34002632	.	T	.	.	LowGQX	END=34002680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34002681	.	T	.	.	LowGQX	END=34002708	GT	./.
chr1	34003034	.	A	.	.	LowGQX	END=34003195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34003196	.	C	.	.	LowGQX	END=34003211	GT	./.
chr1	34006123	.	A	.	.	LowGQX	END=34006300	GT	./.
chr1	34006728	.	A	.	.	LowGQX	END=34006911	GT	./.
chr1	34008318	.	A	.	.	LowGQX	END=34008498	GT	./.
chr1	34011635	.	A	.	.	LowGQX	END=34011650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34011651	.	T	.	.	LowGQX	.	GT	./.
chr1	34011652	.	G	.	.	LowGQX	END=34011733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34011734	.	C	.	.	LowGQX	END=34011821	GT	./.
chr1	34015775	.	A	.	.	LowGQX	END=34015818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34015819	.	C	.	.	LowGQX	.	GT	./.
chr1	34015820	.	A	.	.	LowGQX	END=34015952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34023333	.	C	.	.	LowGQX	END=34023522	GT	./.
chr1	34024899	.	C	.	.	LowGQX	END=34025019	GT	./.
chr1	34025020	.	G	.	.	LowGQX	END=34025073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34033191	.	A	.	.	LowGQX	END=34033347	GT	./.
chr1	34033348	.	G	.	.	LowGQX	END=34033413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34033414	.	A	.	.	LowGQX	.	GT	./.
chr1	34033415	.	A	.	.	LowGQX	END=34033422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34033423	.	T	.	.	LowGQX	.	GT	./.
chr1	34033424	.	G	.	.	LowGQX	END=34033441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34034972	.	A	.	.	LowGQX	END=34035027	GT	./.
chr1	34035028	.	C	.	.	LowGQX	END=34035148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34035149	.	T	.	.	LowGQX	.	GT	./.
chr1	34037130	.	A	.	.	LowGQX	END=34037151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34037152	.	T	.	.	LowGQX	END=34037328	GT	./.
chr1	34038104	.	A	.	.	LowGQX	END=34038293	GT	./.
chr1	34042894	.	A	.	.	LowGQX	END=34042933	GT	./.
chr1	34042934	.	C	.	.	LowGQX	END=34042956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34042957	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	34042958	.	G	.	.	LowGQX	END=34042974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34042975	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	34042976	.	A	.	.	LowGQX	END=34043008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34043009	.	G	.	.	LowGQX	.	GT	./.
chr1	34043010	.	A	.	.	LowGQX	END=34043014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34043015	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	34043016	.	C	.	.	LowGQX	END=34043084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34043085	.	C	.	.	LowGQX	.	GT	./.
chr1	34043086	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34046351	.	A	.	.	LowGQX	END=34046501	GT	./.
chr1	34049240	.	A	.	.	LowGQX	END=34049345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34049346	.	T	.	.	LowGQX	END=34049432	GT	./.
chr1	34052102	.	A	.	.	LowGQX	END=34052219	GT	./.
chr1	34052679	.	A	.	.	LowGQX	END=34052778	GT	./.
chr1	34057965	.	A	.	.	LowGQX	END=34058124	GT	./.
chr1	34065713	.	T	.	.	LowGQX	END=34065841	GT	./.
chr1	34066463	.	A	.	.	LowGQX	END=34066477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34066478	.	G	.	.	LowGQX	.	GT	./.
chr1	34066479	.	G	.	.	LowGQX	END=34066529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34066530	.	T	.	.	LowGQX	.	GT	./.
chr1	34066531	.	T	.	.	LowGQX	END=34066558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34066559	.	C	.	.	LowGQX	END=34066612	GT	./.
chr1	34067897	.	T	.	.	LowGQX	END=34068063	GT	./.
chr1	34068064	.	G	.	.	LowGQX	END=34068103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34068104	.	T	.	.	LowGQX	.	GT	./.
chr1	34068105	.	A	.	.	LowGQX	END=34068114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34068115	.	G	.	.	LowGQX	.	GT	./.
chr1	34068116	.	T	.	.	LowGQX	END=34068148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34070880	.	A	.	.	LowGQX	END=34071072	GT	./.
chr1	34071421	.	G	.	.	LowGQX	END=34071590	GT	./.
chr1	34076639	.	A	.	.	LowGQX	END=34076852	GT	./.
chr1	34080052	.	C	.	.	LowGQX	END=34080222	GT	./.
chr1	34082491	.	T	.	.	LowGQX	END=34082502	GT	./.
chr1	34082503	.	T	.	.	LowGQX	END=34082521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34082522	.	A	.	.	LowGQX	.	GT	./.
chr1	34082523	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34082524	.	G	.	.	LowGQX	.	GT	./.
chr1	34082525	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34082526	.	T	.	.	LowGQX	.	GT	./.
chr1	34082527	.	A	.	.	LowGQX	END=34082530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34082531	.	C	.	.	LowGQX	.	GT	./.
chr1	34082532	.	C	.	.	LowGQX	END=34082564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34082565	.	T	.	.	LowGQX	.	GT	./.
chr1	34082566	.	G	.	.	LowGQX	END=34082570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34082571	.	T	.	.	LowGQX	.	GT	./.
chr1	34082572	.	G	.	.	LowGQX	END=34082590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34083097	.	A	.	.	LowGQX	END=34083219	GT	./.
chr1	34087765	.	A	.	.	LowGQX	END=34087771	GT	./.
chr1	34087772	.	T	.	.	LowGQX	END=34087777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34087778	.	A	.	.	LowGQX	.	GT	./.
chr1	34087779	.	A	.	.	LowGQX	END=34087801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34087802	.	C	.	.	LowGQX	.	GT	./.
chr1	34087803	.	T	.	.	LowGQX	END=34087863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34087864	.	G	.	.	LowGQX	.	GT	./.
chr1	34087865	.	G	.	.	LowGQX	END=34087873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34088968	.	A	.	.	LowGQX	END=34089068	GT	./.
chr1	34090117	.	A	.	.	LowGQX	END=34090245	GT	./.
chr1	34090649	.	A	.	.	LowGQX	END=34090856	GT	./.
chr1	34092084	.	A	.	.	LowGQX	END=34092183	GT	./.
chr1	34099020	.	A	.	.	LowGQX	END=34099072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34099073	.	C	.	.	LowGQX	END=34099137	GT	./.
chr1	34100812	.	A	.	.	LowGQX	END=34100932	GT	./.
chr1	34101958	.	A	.	.	LowGQX	END=34102156	GT	./.
chr1	34112246	.	A	.	.	LowGQX	END=34112437	GT	./.
chr1	34117921	.	A	.	.	LowGQX	END=34118024	GT	./.
chr1	34118025	.	A	.	.	LowGQX	END=34118063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34123544	.	A	.	.	LowGQX	END=34123682	GT	./.
chr1	34123683	.	C	.	.	LowGQX	END=34123739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34128488	.	A	.	.	LowGQX	END=34128694	GT	./.
chr1	34158478	.	A	.	.	LowGQX	END=34158658	GT	./.
chr1	34164351	.	A	.	.	LowGQX	END=34164356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34164357	.	A	.	.	LowGQX	.	GT	./.
chr1	34164358	.	C	.	.	LowGQX	END=34164361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34164362	.	T	.	.	LowGQX	.	GT	./.
chr1	34164363	.	G	.	.	LowGQX	END=34164370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34164371	.	G	.	.	LowGQX	.	GT	./.
chr1	34164372	.	C	.	.	LowGQX	END=34164378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34164379	.	C	.	.	LowGQX	.	GT	./.
chr1	34164380	.	A	.	.	LowGQX	END=34164390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34164391	.	T	.	.	LowGQX	END=34164393	GT	./.
chr1	34164394	.	C	.	.	LowGQX	END=34164440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34164441	.	G	.	.	LowGQX	END=34164546	GT	./.
chr1	34166115	.	A	.	.	LowGQX	END=34166275	GT	./.
chr1	34174687	.	A	.	.	LowGQX	END=34174750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34174751	.	G	.	.	LowGQX	.	GT	./.
chr1	34174752	.	C	.	.	LowGQX	END=34174754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34174755	.	G	.	.	LowGQX	.	GT	./.
chr1	34174756	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34174757	.	T	.	.	LowGQX	.	GT	./.
chr1	34174758	.	C	.	.	LowGQX	END=34174760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34174761	.	G	.	.	LowGQX	.	GT	./.
chr1	34174762	.	A	.	.	LowGQX	END=34174764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34174765	.	G	.	.	LowGQX	.	GT	./.
chr1	34174766	.	A	.	.	LowGQX	END=34174769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34174770	.	G	.	.	LowGQX	.	GT	./.
chr1	34174771	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34174772	.	T	.	.	LowGQX	.	GT	./.
chr1	34174773	.	G	.	.	LowGQX	END=34174779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34174780	.	T	.	.	LowGQX	END=34174781	GT	./.
chr1	34174782	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34174783	.	T	.	.	LowGQX	END=34174883	GT	./.
chr1	34180185	.	A	.	.	LowGQX	END=34180190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180191	.	A	.	.	LowGQX	.	GT	./.
chr1	34180192	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	34180193	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34180194	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	34180195	.	C	.	.	LowGQX	END=34180196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34180197	.	T	.	.	LowGQX	.	GT	./.
chr1	34180198	.	G	.	.	LowGQX	END=34180201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34180202	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	34180203	.	A	.	.	LowGQX	.	GT	./.
chr1	34180204	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34180205	.	G	.	.	LowGQX	.	GT	./.
chr1	34180206	.	C	.	.	LowGQX	END=34180207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34180208	.	A	.	.	LowGQX	.	GT	./.
chr1	34180209	.	G	.	.	LowGQX	END=34180210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34180211	.	T	.	.	LowGQX	END=34180212	GT	./.
chr1	34180213	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34180214	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	34180215	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	34180216	.	A	.	.	LowGQX	END=34180220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34180221	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	34180222	.	C	.	.	LowGQX	END=34180223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34180224	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	34180225	.	C	.	.	LowGQX	END=34180226	GT	./.
chr1	34180227	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180228	.	C	.	.	LowGQX	.	GT	./.
chr1	34180229	.	C	.	.	LowGQX	END=34180230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180231	.	C	.	.	LowGQX	END=34180235	GT	./.
chr1	34180236	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180237	.	C	.	.	LowGQX	END=34180239	GT	./.
chr1	34180240	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180241	.	T	.	.	LowGQX	.	GT	./.
chr1	34180242	.	G	.	.	LowGQX	END=34180243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180244	.	T	.	.	LowGQX	END=34180246	GT	./.
chr1	34180247	.	G	.	.	LowGQX	END=34180249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180250	.	C	.	.	LowGQX	.	GT	./.
chr1	34180251	.	G	.	.	LowGQX	END=34180252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180253	.	T	.	.	LowGQX	.	GT	./.
chr1	34180254	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180255	.	C	.	.	LowGQX	.	GT	./.
chr1	34180256	.	C	.	.	LowGQX	END=34180259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180260	.	C	.	.	LowGQX	.	GT	./.
chr1	34180261	.	A	.	.	LowGQX	END=34180262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180263	.	A	.	.	LowGQX	.	GT	./.
chr1	34180264	.	C	.	.	LowGQX	END=34180266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180267	.	T	.	.	LowGQX	END=34180268	GT	./.
chr1	34180269	.	C	.	.	LowGQX	END=34180277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180278	.	G	.	.	LowGQX	.	GT	./.
chr1	34180279	.	C	.	.	LowGQX	END=34180281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180282	.	G	.	.	LowGQX	END=34180284	GT	./.
chr1	34180285	.	A	.	.	LowGQX	END=34180288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180289	.	T	.	.	LowGQX	.	GT	./.
chr1	34180290	.	C	.	.	LowGQX	END=34180294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180295	.	T	.	.	LowGQX	.	GT	./.
chr1	34180296	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180297	.	T	.	.	LowGQX	.	GT	./.
chr1	34180298	.	C	.	.	LowGQX	END=34180299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180300	.	C	.	.	LowGQX	.	GT	./.
chr1	34180301	.	C	.	.	LowGQX	END=34180315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180316	.	A	.	.	LowGQX	.	GT	./.
chr1	34180317	.	G	.	.	LowGQX	END=34180327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180328	.	T	.	.	LowGQX	.	GT	./.
chr1	34180329	.	G	.	.	LowGQX	END=34180337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34180338	.	T	.	.	LowGQX	END=34180377	GT	./.
chr1	34181884	.	A	.	.	LowGQX	END=34181949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34181950	.	A	.	.	LowGQX	END=34182103	GT	./.
chr1	34189795	.	A	.	.	LowGQX	END=34189915	GT	./.
chr1	34190115	.	A	.	.	LowGQX	END=34190307	GT	./.
chr1	34190948	.	A	.	.	LowGQX	END=34190970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34190971	.	C	.	.	LowGQX	END=34191139	GT	./.
chr1	34192146	.	A	.	.	LowGQX	END=34192188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34192189	.	A	.	.	LowGQX	.	GT	./.
chr1	34192190	.	A	.	.	LowGQX	END=34192198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34192199	.	G	.	.	LowGQX	END=34192288	GT	./.
chr1	34204729	.	G	.	.	LowGQX	END=34204937	GT	./.
chr1	34208879	.	A	.	.	LowGQX	END=34208941	GT	./.
chr1	34208942	.	G	.	.	LowGQX	END=34208944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34208945	.	C	.	.	LowGQX	.	GT	./.
chr1	34208946	.	A	.	.	LowGQX	END=34208981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34208982	.	T	.	.	LowGQX	.	GT	./.
chr1	34208983	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34208984	.	T	.	.	LowGQX	.	GT	./.
chr1	34208985	.	C	.	.	LowGQX	END=34208999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34209000	.	A	.	.	LowGQX	.	GT	./.
chr1	34209001	.	G	.	.	LowGQX	END=34209002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34209003	.	A	.	.	LowGQX	.	GT	./.
chr1	34209004	.	C	.	.	LowGQX	END=34209069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34209070	.	C	.	.	LowGQX	.	GT	./.
chr1	34209071	.	G	.	.	LowGQX	END=34209089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34209090	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	34209091	.	G	.	.	LowGQX	END=34209096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34209097	.	C	.	.	LowGQX	.	GT	./.
chr1	34209098	.	A	.	.	LowGQX	END=34209102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34209103	.	T	.	.	LowGQX	.	GT	./.
chr1	34209104	.	G	.	.	LowGQX	END=34209109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34209110	.	G	.	.	LowGQX	.	GT	./.
chr1	34209111	.	A	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	34209112	.	T	.	.	LowGQX	END=34209115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34209116	.	C	.	.	LowGQX	.	GT	./.
chr1	34209117	.	C	.	.	LowGQX	END=34209134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34209135	.	T	.	.	LowGQX	.	GT	./.
chr1	34209136	.	T	.	.	LowGQX	END=34209138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34209139	.	C	.	.	LowGQX	.	GT	./.
chr1	34209140	.	A	.	.	LowGQX	END=34209150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34209151	.	G	.	.	LowGQX	.	GT	./.
chr1	34209152	.	G	.	.	LowGQX	END=34209157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34209158	.	G	.	.	LowGQX	.	GT	./.
chr1	34209159	.	G	.	.	LowGQX	END=34209179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34209180	.	G	.	.	LowGQX	END=34209209	GT	./.
chr1	34238161	.	C	.	.	LowGQX	END=34238354	GT	./.
chr1	34254199	.	A	.	.	LowGQX	END=34254315	GT	./.
chr1	34258022	.	A	.	.	LowGQX	END=34258129	GT	./.
chr1	34270315	.	A	.	.	LowGQX	END=34270499	GT	./.
chr1	34276301	.	A	.	.	LowGQX	END=34276511	GT	./.
chr1	34285312	.	A	.	.	LowGQX	END=34285440	GT	./.
chr1	34286064	.	T	.	.	LowGQX	END=34286070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34286071	.	T	.	.	LowGQX	.	GT	./.
chr1	34286072	.	G	.	.	LowGQX	END=34286077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34286078	.	C	.	.	LowGQX	.	GT	./.
chr1	34286079	.	G	.	.	LowGQX	END=34286090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34286091	.	T	.	.	LowGQX	.	GT	./.
chr1	34286092	.	T	.	.	LowGQX	END=34286093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34286094	.	C	.	.	LowGQX	.	GT	./.
chr1	34286095	.	C	.	.	LowGQX	END=34286097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34286098	.	T	.	.	LowGQX	.	GT	./.
chr1	34286099	.	T	.	.	LowGQX	END=34286100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34286101	.	C	.	.	LowGQX	.	GT	./.
chr1	34286102	.	G	.	.	LowGQX	END=34286108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34286109	.	C	.	.	LowGQX	.	GT	./.
chr1	34286110	.	C	.	.	LowGQX	END=34286112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34286113	.	G	.	.	LowGQX	.	GT	./.
chr1	34286114	.	G	.	.	LowGQX	END=34286117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34286118	.	G	.	.	LowGQX	.	GT	./.
chr1	34286119	.	G	.	.	LowGQX	END=34286126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34286127	.	T	.	.	LowGQX	END=34286130	GT	./.
chr1	34286131	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34286132	.	T	.	.	LowGQX	.	GT	./.
chr1	34286133	.	C	.	.	LowGQX	END=34286136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34286137	.	G	.	.	LowGQX	END=34286139	GT	./.
chr1	34286140	.	A	.	.	LowGQX	END=34286141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34286142	.	A	.	.	LowGQX	.	GT	./.
chr1	34286143	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34286144	.	A	.	.	LowGQX	END=34286163	GT	./.
chr1	34291236	.	G	.	.	LowGQX	END=34291386	GT	./.
chr1	34312483	.	A	.	.	LowGQX	END=34312642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34329791	.	A	.	.	LowGQX	END=34330355	GT	./.
chr1	34383693	.	A	.	.	LowGQX	END=34383904	GT	./.
chr1	34401359	.	A	.	.	LowGQX	END=34401557	GT	./.
chr1	34498193	.	A	.	.	LowGQX	END=34498275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34498276	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:33,0,30:60:5:0.500
chr1	34498277	.	A	.	.	LowGQX	END=34498334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34498335	.	G	.	.	LowGQX	.	GT	./.
chr1	34498336	.	A	.	.	LowGQX	END=34498339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34498340	.	A	.	.	LowGQX	.	GT	./.
chr1	34498341	.	C	.	.	LowGQX	END=34498344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34498345	.	C	.	.	LowGQX	END=34498352	GT	./.
chr1	34554576	.	A	.	.	LowGQX	END=34554796	GT	./.
chr1	34630500	.	G	.	.	LowGQX	END=34630698	GT	./.
chr1	34631332	.	A	.	.	LowGQX	END=34631431	GT	./.
chr1	34643390	.	A	.	.	LowGQX	END=34643710	GT	./.
chr1	34662825	.	G	.	.	LowGQX	END=34663516	GT	./.
chr1	34666371	.	A	.	.	LowGQX	END=34666553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34666554	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	34666555	.	T	.	.	LowGQX	END=34666576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34666577	.	C	.	.	LowGQX	END=34666635	GT	./.
chr1	34667683	.	A	.	.	LowGQX	END=34667791	GT	./.
chr1	34667792	.	C	.	.	LowGQX	END=34667814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	34667815	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	34667816	.	C	.	.	LowGQX	END=34667819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34667820	.	C	A	7.08	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=3.54;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:36,3,0:60:3:1.000
chr1	34667821	.	A	.	.	LowGQX	END=34667862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	34673747	.	T	.	.	LowGQX	END=34673846	GT	./.
chr1	34677809	.	A	.	.	LowGQX	END=34678009	GT	./.
chr1	34684275	.	C	.	.	LowGQX	END=34684374	GT	./.
chr1	35183954	.	G	.	.	LowGQX	END=35184006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35184007	.	C	.	.	LowGQX	END=35184053	GT	./.
chr1	35222930	.	C	.	.	LowGQX	END=35222932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	35222933	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	35222934	.	G	.	.	LowGQX	END=35222936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	35222937	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	35222938	.	T	.	.	LowGQX	END=35222946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	35222947	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	35222948	.	T	.	.	LowGQX	END=35222953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	35222954	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	35222955	.	A	.	.	LowGQX	END=35222958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	35222959	.	C	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	35222960	.	T	.	.	LowGQX	END=35222967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	35222968	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	35222969	.	T	.	.	LowGQX	END=35222976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	35222977	.	T	.	.	LowGQX	END=35222978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	35222979	.	C	.	.	LowGQX	END=35222984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	35222985	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	35222986	.	G	.	.	LowGQX	END=35222996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	35222997	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	35222998	.	A	.	.	LowGQX	END=35222999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	35223000	.	C	.	.	PASS	END=35223001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	35223002	.	G	.	.	LowGQX	END=35223005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	35223006	.	G	.	.	PASS	END=35223007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	35223008	.	C	.	51.06	LowGQX	DP=10;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:21.07:60:21
chr1	35223009	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	35223010	.	C	.	.	LowGQX	END=35223011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	35223012	.	G	.	.	PASS	END=35223013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35223014	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	35223015	.	C	.	.	PASS	END=35223016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35223017	.	T	.	.	LowGQX	END=35223022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	35223023	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	35223024	.	C	.	.	LowGQX	END=35223027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	35223028	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	35223029	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	35223030	.	G	.	.	PASS	END=35223036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	35223037	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	35223038	.	A	.	.	PASS	END=35223045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	35223046	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:18:60
chr1	35223047	.	C	.	.	PASS	END=35223052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	35223053	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:16:60
chr1	35223054	.	G	.	.	PASS	END=35223056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	35223057	.	T	.	.	PASS	END=35223075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	35223076	.	A	.	.	PASS	END=35223091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	35223092	.	A	.	.	PASS	END=35223096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr1	35223097	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:31:60
chr1	35223098	.	G	.	.	PASS	END=35223112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	35223113	.	C	.	.	PASS	END=35223127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:60
chr1	35223128	.	A	.	.	PASS	END=35223132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	35223133	.	T	.	.	PASS	END=35223134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:39:60
chr1	35223135	.	C	.	.	PASS	END=35223158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chr1	35223159	.	C	.	.	PASS	END=35223185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	35223186	.	A	.	.	PASS	END=35223199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	35223200	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:36:60
chr1	35223201	.	C	.	.	PASS	END=35223205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	35223206	.	T	.	.	PASS	END=35223207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	35223208	.	A	.	.	PASS	END=35223214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	35223215	.	T	.	.	PASS	END=35223226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	35223227	.	A	.	.	PASS	END=35223228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	35223229	.	G	.	.	PASS	END=35223242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	35223243	.	G	.	.	PASS	END=35223250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	35223251	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	35223252	.	A	.	.	PASS	END=35223261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	35223262	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:3:60
chr1	35223263	.	A	.	.	PASS	END=35223269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	35223270	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	35223271	.	G	.	.	PASS	END=35223277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35223278	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	35223279	.	C	.	.	PASS	END=35223286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	35223287	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	35223288	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	35223289	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	35223290	.	C	.	.	PASS	END=35223305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	35223306	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	35223307	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:36:60
chr1	35223308	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	35223309	.	G	.	.	PASS	END=35223310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	35223311	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:21:60
chr1	35223312	.	C	.	.	PASS	END=35223315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	35223316	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr1	35223317	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr1	35223318	.	G	.	.	LowGQX	END=35223320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	35223321	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35223322	.	T	.	.	LowGQX	END=35223326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	35223327	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	35223328	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	35223329	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	35223330	.	C	.	.	LowGQX	END=35223332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	35223333	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	35223334	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	35223335	.	T	.	.	PASS	END=35223337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	35223338	.	T	.	.	LowGQX	END=35223339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	35223340	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	35223341	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	35223342	.	C	.	.	PASS	END=35223343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35223344	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	35223345	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:0:60
chr1	35223346	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35223347	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	35223348	.	G	.	.	PASS	END=35223351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35223352	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	35223353	.	T	.	.	PASS	END=35223355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	35223356	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	35223357	.	C	.	.	PASS	END=35223363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	35223364	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:1:60
chr1	35223365	.	T	.	.	PASS	END=35223366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	35223367	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:3:60
chr1	35223368	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:39:60
chr1	35223369	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:3:60
chr1	35223370	.	T	.	.	PASS	END=35223378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	35223379	.	C	.	.	PASS	END=35223380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	35223381	.	C	.	.	PASS	END=35223389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	35223390	.	C	.	.	PASS	END=35223391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	35223392	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:12:60
chr1	35223393	.	C	.	.	PASS	END=35223418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	35223419	.	A	.	.	PASS	END=35223427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	35223428	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:36:60
chr1	35223429	.	A	.	.	PASS	END=35223431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	35223432	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:0:60
chr1	35223433	.	C	.	.	PASS	END=35223443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	35223444	.	T	.	.	PASS	END=35223484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	35223485	.	T	.	.	PASS	END=35223492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr1	35223493	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:51:60
chr1	35223494	.	T	.	.	PASS	END=35223556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	35223557	.	T	.	.	PASS	END=35223586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	35223587	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:42:60
chr1	35223588	.	A	.	.	PASS	END=35223596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	35223597	.	T	.	.	PASS	END=35223601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	35223602	.	C	.	.	PASS	END=35223605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	35223606	.	G	.	.	PASS	END=35223614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	35223615	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr1	35223616	.	C	.	.	PASS	END=35223621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	35223622	.	C	.	.	PASS	END=35223623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	35223624	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:15:60
chr1	35223625	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:54:60
chr1	35223626	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:36:60
chr1	35223627	.	C	.	.	PASS	END=35223631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	35223632	.	C	.	.	PASS	END=35223634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	35223635	.	C	.	.	PASS	END=35223638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	35223639	.	T	.	.	PASS	END=35223650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	35223651	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	35223652	.	G	.	.	PASS	END=35223654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	35223655	.	G	.	.	LowGQX	END=35223656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	35223657	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35223658	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	35223659	.	T	.	.	PASS	END=35223660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35223661	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	35223662	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35223663	.	T	.	.	LowGQX	END=35223665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	35223666	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	35223667	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	35223668	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35223669	.	T	.	.	LowGQX	END=35223670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	35223671	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35223672	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	35223673	.	C	.	.	PASS	END=35223676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35223677	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	35223678	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35223679	.	T	.	.	LowGQX	END=35223686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	35223687	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	35223688	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	35223689	.	C	.	.	LowGQX	END=35223695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	35223696	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	35223697	.	C	.	.	LowGQX	END=35223701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	35223702	.	T	.	.	LowGQX	END=35223709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	35223710	.	T	.	.	LowGQX	END=35223711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	35223712	.	C	.	.	LowGQX	END=35223713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	35223714	.	A	.	.	LowGQX	END=35223729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	35223730	.	C	.	4.58	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.01:60:0
chr1	35223731	.	A	.	.	LowGQX	END=35223755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	35226805	.	G	.	.	PASS	END=35226809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	35226810	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	35226811	.	C	.	.	PASS	END=35226814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	35226815	.	G	.	.	PASS	END=35226821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	35226822	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:60:60
chr1	35226823	.	C	.	.	PASS	END=35226837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	35226838	.	A	.	.	PASS	END=35226867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	35226868	.	T	.	.	PASS	END=35226881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	35226882	.	G	.	.	PASS	END=35226899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	35226900	.	G	.	.	PASS	END=35226909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	35226910	.	G	.	.	PASS	END=35226932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	35226933	.	T	.	.	PASS	END=35226956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	35226957	.	G	.	.	PASS	END=35227102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:282:99:60
chr1	35227103	.	T	.	.	PASS	END=35227196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr1	35227197	.	G	.	.	PASS	END=35227316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:285:99:60
chr1	35227317	.	G	.	.	PASS	END=35227344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	35227345	.	T	.	.	PASS	END=35227370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	35227371	.	T	.	.	PASS	END=35227385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	35227386	.	C	.	.	PASS	END=35227460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	35227461	.	C	.	.	PASS	END=35227483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:96:60
chr1	35227484	.	G	.	.	PASS	END=35227526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	35227527	.	T	.	.	PASS	END=35227569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	35227570	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:90:60
chr1	35227571	.	T	.	.	PASS	END=35227580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	35227581	.	A	.	.	PASS	END=35227585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:54:60
chr1	35227586	.	A	.	.	PASS	END=35227595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	35227596	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:3:60
chr1	35227597	.	G	.	.	PASS	END=35227602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:60
chr1	35227603	.	T	.	.	PASS	END=35227614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	35227615	.	A	.	.	LowGQX	END=35227619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	35227620	.	T	.	.	LowGQX	END=35227622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	35227623	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	35227624	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:6:60
chr1	35227625	.	C	.	.	LowGQX	END=35227633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	35227634	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	35227635	.	G	.	.	LowGQX	END=35227637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	35227638	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	35227639	.	G	.	.	LowGQX	END=35227641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	35227642	.	G	.	.	LowGQX	END=35227647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	35227648	.	T	.	6.88	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.02:60:0
chr1	35227649	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:60
chr1	35227650	.	T	.	.	LowGQX	END=35227653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	35227654	.	T	.	.	LowGQX	END=35227658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	35227659	.	T	.	.	LowGQX	END=35227665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	35227666	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	35227667	.	C	.	.	LowGQX	END=35227685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	35227686	.	G	.	.	LowGQX	END=35227707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35250313	.	G	.	.	PASS	END=35250342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	35250343	.	G	.	.	PASS	END=35250346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	35250347	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:72:60
chr1	35250348	.	G	.	.	PASS	END=35250368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:60
chr1	35250369	.	C	.	.	PASS	END=35250387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	35250388	.	C	.	.	PASS	END=35250409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	35250410	.	A	.	.	PASS	END=35250455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	35250456	.	C	.	.	PASS	END=35250489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	35250490	.	G	.	.	PASS	END=35250652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr1	35250653	.	A	.	.	PASS	END=35250732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:307:99:60
chr1	35250733	.	C	.	.	PASS	END=35250837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:335:99:60
chr1	35250838	.	C	.	.	PASS	END=35250893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:271:99:60
chr1	35250894	.	C	.	.	PASS	END=35250954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	35250955	.	T	.	.	PASS	END=35250979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	35250980	.	T	.	.	PASS	END=35251004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	35251005	.	C	.	.	PASS	END=35251024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	35251025	.	A	.	.	PASS	END=35251055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	35251056	.	C	.	.	PASS	END=35251102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	35251103	.	A	.	.	PASS	END=35251126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	35251127	.	C	.	.	PASS	END=35251136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	35251137	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:38:27:60
chr1	35251138	.	A	.	.	PASS	END=35251166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	35251167	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:54:60
chr1	35251168	.	C	.	.	PASS	END=35251173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	35251174	.	T	.	.	PASS	END=35251177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	35251178	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:36:60
chr1	35251179	.	A	.	.	PASS	END=35251180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	35251181	.	A	.	.	PASS	END=35251190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	35251191	.	T	.	.	PASS	END=35251197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	35251198	.	A	.	.	PASS	END=35251217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	35251218	.	A	.	.	PASS	END=35251223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35251224	.	A	.	.	LowGQX	END=35251225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	35251226	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	35251227	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	35258195	.	A	.	.	LowGQX	END=35258405	GT	./.
chr1	35259798	.	A	.	.	PASS	END=35259853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	35259854	.	G	.	.	PASS	END=35259895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	35259896	.	G	.	.	PASS	END=35259945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	35259946	.	G	A	4627.00	PASS	BaseQRankSum=-1.310;DP=156;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=13.4043;MQ=60;MQ0=0;MQRankSum=0.089;QD=29.66;ReadPosRankSum=0.000;SB=-2448.86	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,155:156:99:4627,316,0:60:99:0.994
chr1	35259947	.	T	.	.	PASS	END=35259960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	35259961	.	A	G	4864.54	PASS	BaseQRankSum=-0.055;DP=158;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=22.0419;MQ=60;MQ0=0;MQRankSum=-0.894;QD=30.79;ReadPosRankSum=-0.938;SB=-2500.22	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,156:158:99:4865,340,0:60:99:0.994
chr1	35259962	.	T	.	.	PASS	END=35260070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	35260071	.	G	.	.	PASS	END=35260202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	35260203	.	T	.	.	PASS	END=35260266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	35260267	.	G	.	.	PASS	END=35260315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	35260316	.	G	.	.	PASS	END=35260406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:267:99:60
chr1	35260407	.	G	.	.	PASS	END=35260544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:290:99:60
chr1	35260545	.	A	.	.	PASS	END=35260603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	35260604	.	T	.	.	PASS	END=35260649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	35260650	.	C	.	.	PASS	END=35260722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	35260723	.	C	.	.	PASS	END=35260734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	35260735	.	C	.	.	PASS	END=35260768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	35260769	.	C	T	3215.50	PASS	DP=105;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=33.1944;MQ=60;MQ0=0;QD=30.62;SB=-224.95	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,101:105:99:3249,250,0:60:99:1.000
chr1	35260770	.	C	.	.	PASS	END=35260816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	35260817	.	A	.	.	PASS	END=35260818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	35320716	.	T	.	.	LowGQX	END=35321044	GT	./.
chr1	35321045	.	G	.	.	LowGQX	END=35321151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35321152	.	G	.	.	LowGQX	.	GT	./.
chr1	35321153	.	G	.	.	LowGQX	END=35321187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35321188	.	A	.	.	LowGQX	END=35321283	GT	./.
chr1	35321299	.	A	.	.	LowGQX	END=35321382	GT	./.
chr1	35321383	.	G	.	.	LowGQX	END=35321393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35321394	.	A	.	.	LowGQX	.	GT	./.
chr1	35321395	.	G	.	.	LowGQX	END=35321450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35321451	.	A	.	.	LowGQX	.	GT	./.
chr1	35321452	.	C	.	.	LowGQX	END=35321578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35331439	.	T	.	.	LowGQX	END=35331442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	35331443	.	C	.	.	LowGQX	END=35331444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	35331445	.	G	.	.	LowGQX	END=35331448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	35331449	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	35331450	.	T	.	.	LowGQX	END=35331452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	35331453	.	A	.	.	LowGQX	END=35331466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	35331467	.	G	.	.	PASS	END=35331472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35331473	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	35331474	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	35331475	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr1	35331476	.	G	.	.	PASS	END=35331478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	35331479	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	35331480	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	35331481	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	35331482	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35331483	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	35331484	.	C	.	.	PASS	END=35331492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	35331493	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr1	35331494	.	G	.	.	PASS	END=35331503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35331504	.	C	.	.	LowGQX	END=35331506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	35331507	.	C	.	.	PASS	END=35331510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35331511	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	35331512	.	G	.	.	PASS	END=35331514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35331515	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	35331516	.	T	.	.	LowGQX	END=35331517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:0:60
chr1	35331518	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	35331519	.	G	.	.	PASS	END=35331520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35331521	.	A	.	.	LowGQX	END=35331522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	35331523	.	G	.	.	PASS	END=35331524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35331525	.	T	.	.	LowGQX	END=35331526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	35331527	.	A	.	.	PASS	END=35331528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	35331529	.	A	.	.	LowGQX	END=35331530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:60
chr1	35331531	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	35331532	.	C	.	.	PASS	END=35331534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	35331535	.	A	.	.	LowGQX	END=35331536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	35331537	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:36:60
chr1	35331538	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	35331539	.	G	.	.	PASS	END=35331540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	35331541	.	G	.	.	PASS	END=35331545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	35331546	.	A	.	.	PASS	END=35331547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	35331548	.	G	.	.	PASS	END=35331558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	35331559	.	C	.	.	PASS	END=35331570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	35331571	.	G	.	.	PASS	END=35331589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	35331590	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:24:60
chr1	35331591	.	C	.	.	PASS	END=35331604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	35331605	.	T	.	.	PASS	END=35331607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:60
chr1	35331608	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:21:60
chr1	35331609	.	C	.	.	PASS	END=35331613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	35331614	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:24:60
chr1	35331615	.	C	.	.	PASS	END=35331619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	35331620	.	A	.	48.02	LowGQX	DP=19;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:15:19:18.03:60:18
chr1	35331621	.	C	.	.	PASS	END=35331623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	35331624	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:60
chr1	35331625	.	G	.	.	PASS	END=35331626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	35331627	.	G	.	.	PASS	END=35331629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	35331630	.	T	.	.	PASS	END=35331633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	35331634	.	G	.	.	PASS	END=35331635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	35331636	.	A	.	.	PASS	END=35331637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	35331638	.	G	.	.	PASS	END=35331643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	35331644	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:75:60
chr1	35331645	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:99:60
chr1	35331646	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:35:60
chr1	35331647	.	A	.	.	PASS	END=35331648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:68:60
chr1	35331649	.	C	.	.	PASS	END=35331661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	35331662	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:75:60
chr1	35331663	.	G	.	.	PASS	END=35331680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	35331681	.	C	.	.	PASS	END=35331693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	35331694	.	G	.	.	PASS	END=35331828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	35331829	.	G	.	.	PASS	END=35331831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	35331832	.	C	.	.	PASS	END=35331842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	35331843	.	C	.	.	PASS	END=35331866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	35331867	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:87:60
chr1	35331868	.	T	.	.	PASS	END=35331869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:54:60
chr1	35331870	.	C	.	.	PASS	END=35331877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	35331878	.	T	.	.	PASS	END=35331907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	35331908	.	G	.	.	PASS	END=35331911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	35331912	.	A	.	.	PASS	END=35331919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	35331920	.	T	.	.	PASS	END=35331921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	35331922	.	G	.	.	PASS	END=35331928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	35331929	.	T	.	.	PASS	END=35331937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	35331938	.	G	.	.	PASS	END=35331948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	35331949	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	35331950	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:51:60
chr1	35331951	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:22:60
chr1	35331952	.	C	.	.	PASS	END=35331953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	35332598	.	G	.	.	PASS	END=35332627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	35332628	.	C	.	.	PASS	END=35332648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	35332649	.	C	.	.	PASS	END=35332797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	35332798	.	A	.	.	PASS	END=35332843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	35333086	.	C	.	.	PASS	END=35333119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	35333120	.	C	.	.	PASS	END=35333210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	35333211	.	T	.	.	PASS	END=35333255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	35333256	.	G	.	.	PASS	END=35333271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	35333272	.	C	.	.	PASS	END=35333279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	35334155	.	C	.	.	PASS	END=35334174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	35334175	.	A	.	.	PASS	END=35334212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	35334213	.	G	.	.	PASS	END=35334278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	35334279	.	T	.	.	PASS	END=35334318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	35334319	.	C	.	.	PASS	END=35334341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	35334342	.	G	.	.	PASS	END=35334365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	35334366	.	T	.	.	PASS	END=35334375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	35334376	.	T	.	.	PASS	END=35334377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	35334378	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:38:60
chr1	35334379	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:69:59
chr1	35334380	.	G	.	.	PASS	END=35334387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:58
chr1	35334388	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:72:59
chr1	35334389	.	C	.	.	PASS	END=35334392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:59
chr1	35334393	.	A	.	37.56	LowGQX	DP=50;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:21:50:7.57:59:8
chr1	35334394	.	G	.	.	PASS	END=35334397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:59
chr1	35334398	.	C	G	139.12	SB	BaseQRankSum=-1.971;DP=50;Dels=0.00;FS=49.795;HRun=5;HaplotypeScore=38.9810;MQ=59;MQ0=0;MQRankSum=-2.173;QD=2.78;ReadPosRankSum=-2.880;SB=0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:32,18:50:99:169,0,642:59:99:0.360
chr1	35334399	.	G	.	.	PASS	END=35334403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:59
chr1	35334404	.	T	G	582.02	SB	BaseQRankSum=-1.903;DP=66;Dels=0.02;FS=84.033;HRun=5;HaplotypeScore=40.8725;MQ=59;MQ0=0;MQRankSum=-0.343;QD=8.82;ReadPosRankSum=-1.757;SB=-3.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:21,42:65:99:612,0,431:59:99:0.667
chr1	35334405	.	G	.	.	PASS	END=35334416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:59
chr1	35334417	.	A	.	61.60	PASS	DP=73;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:43:73:31.61:59:32
chr1	35334418	.	G	.	.	PASS	END=35334465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:59
chr1	35334466	.	C	.	.	PASS	END=35334503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:93:60
chr1	35334504	.	G	.	.	PASS	END=35334544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	35334545	.	G	.	.	PASS	END=35334622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	35334623	.	G	.	.	PASS	END=35334652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	35334653	.	C	.	.	PASS	END=35334674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	35334675	.	C	.	.	PASS	END=35334685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	35334686	.	C	.	.	PASS	END=35334690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	35334691	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:27:60
chr1	35334692	.	T	.	.	PASS	END=35334703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	35334704	.	T	.	.	PASS	END=35334709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	35334710	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:33:60
chr1	35334711	.	C	.	.	PASS	END=35334722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	35334723	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:18:60
chr1	35334724	.	C	.	.	PASS	END=35334730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	35334731	.	C	.	.	PASS	END=35334734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	35334735	.	C	.	.	PASS	END=35334737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	35334738	.	G	.	.	PASS	END=35334741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	35350528	.	T	.	.	PASS	END=35350542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	35350543	.	C	.	.	PASS	END=35350602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	35350603	.	C	.	.	PASS	END=35350665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	35350666	.	T	.	.	PASS	END=35350706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:82:60
chr1	35350707	.	G	.	.	PASS	END=35350715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	35351028	.	G	.	.	PASS	END=35351152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	35351153	.	T	.	.	PASS	END=35351172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	35351173	.	T	.	.	PASS	END=35351192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	35351193	.	C	.	.	PASS	END=35351221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	35351222	.	C	.	.	PASS	END=35351301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	35351302	.	G	.	.	PASS	END=35351363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	35351364	.	G	.	.	PASS	END=35351443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	35351622	.	C	.	.	PASS	END=35351635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	35351636	.	G	.	.	PASS	END=35351666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	35351667	.	A	.	.	PASS	END=35351695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	35351696	.	G	.	.	PASS	END=35351715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	35351716	.	G	.	.	PASS	END=35351859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	35351860	.	C	.	.	PASS	END=35351896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	35351897	.	G	.	.	PASS	END=35351921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	35351922	.	T	.	.	PASS	END=35351937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	35365216	.	G	.	.	PASS	END=35365260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	35365261	.	T	.	.	PASS	END=35365299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	35365300	.	A	.	.	PASS	END=35365340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	35365341	.	A	.	.	PASS	END=35365375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:60
chr1	35365376	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr1	35365377	.	G	.	.	PASS	END=35365390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:60
chr1	35365391	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:48:60
chr1	35365392	.	G	.	.	PASS	END=35365393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	35365618	.	G	.	.	PASS	END=35365621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	35365622	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:39:60
chr1	35365623	.	G	.	.	PASS	END=35365633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	35365634	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:45:60
chr1	35365635	.	T	.	.	PASS	END=35365636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	35365637	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:66:60
chr1	35365638	.	C	.	.	PASS	END=35365643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr1	35365644	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:72:60
chr1	35365645	.	C	.	.	PASS	END=35365655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:87:60
chr1	35365656	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:75:60
chr1	35365657	.	C	.	.	PASS	END=35365671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:79:60
chr1	35365672	.	A	.	.	PASS	END=35365712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	35365713	.	G	.	.	PASS	END=35365756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	35365757	.	A	.	.	PASS	END=35365810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	35365811	.	T	.	.	PASS	END=35365874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	35365875	.	C	.	.	PASS	END=35365889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	35365890	.	T	.	.	PASS	END=35365911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	35365912	.	C	.	.	PASS	END=35365925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	35369827	.	A	.	.	PASS	END=35369838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	35369839	.	G	.	.	PASS	END=35369876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	35369877	.	C	.	.	PASS	END=35369893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	35369894	.	G	.	.	PASS	END=35369944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	35369945	.	G	.	.	PASS	END=35369969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	35369970	.	G	.	.	PASS	END=35369998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	35369999	.	C	.	.	PASS	END=35370123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	35370124	.	G	.	.	PASS	END=35370179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	35370180	.	T	.	.	PASS	END=35370339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	35370340	.	G	.	.	PASS	END=35370369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	35370370	.	G	.	.	PASS	END=35370399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	35370400	.	A	.	.	PASS	END=35370545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:60
chr1	35370546	.	C	.	.	PASS	END=35370618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	35370619	.	C	.	.	PASS	END=35370654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	35370655	.	C	.	.	PASS	END=35370671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	35370672	.	A	.	.	PASS	END=35370686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	35370687	.	C	.	.	PASS	END=35370712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	35370713	.	C	.	.	PASS	END=35370738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr1	35370739	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:72:60
chr1	35370740	.	A	.	.	PASS	END=35370802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	35370803	.	C	.	.	PASS	END=35370834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	35370835	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:60:60
chr1	35370836	.	G	.	.	PASS	END=35370841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	35370842	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:69:60
chr1	35370843	.	A	.	.	PASS	END=35370862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	35370863	.	A	.	.	PASS	END=35370869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	35370870	.	C	.	.	PASS	END=35370880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	35370881	.	A	.	.	PASS	END=35370882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	35370883	.	C	.	.	PASS	END=35370896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	35370897	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:63:60
chr1	35370898	.	G	.	.	PASS	END=35370900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	35370901	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:54:60
chr1	35370902	.	G	.	.	PASS	END=35370907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	35370908	.	C	.	.	PASS	END=35370988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:79:60
chr1	35370989	.	T	.	.	PASS	END=35370991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	35370992	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:58:60
chr1	35370993	.	C	.	.	PASS	END=35370999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	35371000	.	T	.	.	PASS	END=35371001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:54:60
chr1	35371002	.	T	.	.	PASS	END=35371010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	35371011	.	T	.	.	PASS	END=35371014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	35371015	.	G	.	.	PASS	END=35371028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	35371029	.	G	.	.	PASS	END=35371030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	35371031	.	A	.	.	PASS	END=35371032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	35371033	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:21:60
chr1	35371034	.	T	.	.	PASS	END=35371035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	35441973	.	T	.	.	LowGQX	END=35442095	GT	./.
chr1	35442096	.	G	.	.	LowGQX	END=35442225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35442226	.	T	.	.	LowGQX	END=35442631	GT	./.
chr1	35442632	.	G	.	.	LowGQX	END=35442651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35442652	.	A	.	.	LowGQX	.	GT	./.
chr1	35442653	.	C	.	.	LowGQX	END=35442698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35442699	.	T	.	.	LowGQX	.	GT	./.
chr1	35442700	.	A	.	.	LowGQX	END=35442723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35442724	.	A	.	.	LowGQX	.	GT	./.
chr1	35442725	.	G	.	.	LowGQX	END=35442787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35442788	.	T	.	.	LowGQX	.	GT	./.
chr1	35442789	.	C	.	.	LowGQX	END=35442790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35442791	.	T	.	.	LowGQX	.	GT	./.
chr1	35442792	.	C	.	.	LowGQX	END=35442793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35442794	.	A	.	.	LowGQX	.	GT	./.
chr1	35442795	.	C	.	.	LowGQX	END=35442804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35442805	.	G	.	.	LowGQX	.	GT	./.
chr1	35442806	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35442807	.	T	.	.	LowGQX	.	GT	./.
chr1	35442808	.	G	.	.	LowGQX	END=35442814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35442815	.	T	.	.	LowGQX	.	GT	./.
chr1	35442816	.	A	.	.	LowGQX	END=35442896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35442897	.	C	.	.	LowGQX	END=35442947	GT	./.
chr1	35447544	.	T	.	.	LowGQX	END=35447546	GT	./.
chr1	35447547	.	A	.	.	LowGQX	END=35447586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35447587	.	A	.	.	LowGQX	.	GT	./.
chr1	35447588	.	G	.	.	LowGQX	END=35447634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35447635	.	C	.	.	LowGQX	.	GT	./.
chr1	35447636	.	A	.	.	LowGQX	END=35447646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35447647	.	G	.	.	LowGQX	.	GT	./.
chr1	35447648	.	A	.	.	LowGQX	END=35447687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35447688	.	A	.	.	LowGQX	.	GT	./.
chr1	35447689	.	C	.	.	LowGQX	END=35447720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35449367	.	C	.	.	LowGQX	END=35449548	GT	./.
chr1	35450743	.	G	.	.	LowGQX	END=35450906	GT	./.
chr1	35452703	.	T	.	.	LowGQX	END=35454190	GT	./.
chr1	35454191	.	G	.	.	LowGQX	END=35454199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35454200	.	A	.	.	LowGQX	.	GT	./.
chr1	35454201	.	G	.	.	LowGQX	END=35454203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35454204	.	A	.	.	LowGQX	.	GT	./.
chr1	35454205	.	C	.	.	LowGQX	END=35454497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35454498	.	C	.	.	LowGQX	END=35454621	GT	./.
chr1	35455838	.	T	.	.	LowGQX	END=35455856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35455857	.	A	.	.	LowGQX	.	GT	./.
chr1	35455858	.	C	.	.	LowGQX	END=35455861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35455862	.	A	.	.	LowGQX	.	GT	./.
chr1	35455863	.	T	.	.	LowGQX	END=35455937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35457688	.	A	.	.	LowGQX	END=35457997	GT	./.
chr1	35469487	.	T	.	.	LowGQX	END=35469637	GT	./.
chr1	35470731	.	A	.	.	LowGQX	END=35470758	GT	./.
chr1	35470759	.	G	.	.	LowGQX	END=35470782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35470783	.	G	.	.	LowGQX	.	GT	./.
chr1	35470784	.	C	.	.	LowGQX	END=35470787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35470788	.	T	.	.	LowGQX	.	GT	./.
chr1	35470789	.	G	.	.	LowGQX	END=35470793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35470794	.	C	.	.	LowGQX	.	GT	./.
chr1	35470795	.	A	.	.	LowGQX	END=35470797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35470798	.	C	.	.	LowGQX	.	GT	./.
chr1	35470799	.	T	.	.	LowGQX	END=35470803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35470804	.	A	.	.	LowGQX	.	GT	./.
chr1	35470805	.	T	.	.	LowGQX	END=35470815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35470816	.	G	.	.	LowGQX	.	GT	./.
chr1	35470817	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35470818	.	A	.	.	LowGQX	.	GT	./.
chr1	35470819	.	T	.	.	LowGQX	END=35470824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35470825	.	C	.	.	LowGQX	.	GT	./.
chr1	35470826	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35470827	.	T	.	.	LowGQX	.	GT	./.
chr1	35470828	.	G	.	.	LowGQX	END=35470833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35470834	.	G	.	.	LowGQX	END=35470836	GT	./.
chr1	35470837	.	A	.	.	LowGQX	END=35470848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35470849	.	G	.	.	LowGQX	END=35470850	GT	./.
chr1	35470851	.	A	.	.	LowGQX	END=35470853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35470854	.	T	.	.	LowGQX	.	GT	./.
chr1	35470855	.	T	.	.	LowGQX	END=35470858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35470859	.	C	.	.	LowGQX	END=35470860	GT	./.
chr1	35470861	.	T	.	.	LowGQX	END=35470863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35470864	.	G	.	.	LowGQX	.	GT	./.
chr1	35470865	.	A	.	.	LowGQX	END=35470875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35472550	.	A	.	.	LowGQX	END=35472701	GT	./.
chr1	35474351	.	A	.	.	LowGQX	END=35474452	GT	./.
chr1	35474453	.	G	.	.	LowGQX	END=35474527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35476046	.	A	.	.	LowGQX	END=35476200	GT	./.
chr1	35476357	.	A	.	.	LowGQX	END=35476658	GT	./.
chr1	35477489	.	A	.	.	LowGQX	END=35477608	GT	./.
chr1	35478030	.	A	.	.	LowGQX	END=35478218	GT	./.
chr1	35480296	.	A	.	.	LowGQX	END=35480491	GT	./.
chr1	35480567	.	A	.	.	LowGQX	END=35480765	GT	./.
chr1	35484868	.	T	.	.	LowGQX	END=35485205	GT	./.
chr1	35485977	.	T	.	.	LowGQX	END=35486076	GT	./.
chr1	35496145	.	T	.	.	LowGQX	END=35496295	GT	./.
chr1	35559587	.	A	.	.	LowGQX	END=35559686	GT	./.
chr1	35561348	.	C	.	.	LowGQX	END=35561506	GT	./.
chr1	35562916	.	A	.	.	LowGQX	END=35563088	GT	./.
chr1	35563089	.	C	.	.	LowGQX	END=35563116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35563117	.	A	.	.	LowGQX	.	GT	./.
chr1	35563118	.	T	.	.	LowGQX	END=35563205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35563206	.	C	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	35563207	.	C	.	.	LowGQX	END=35563248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35563249	.	T	.	.	LowGQX	.	GT	./.
chr1	35563250	.	T	.	.	LowGQX	END=35563264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35569894	.	A	.	.	LowGQX	END=35570072	GT	./.
chr1	35570156	.	A	.	.	LowGQX	END=35570254	GT	./.
chr1	35570255	.	G	.	.	LowGQX	END=35570259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35570260	.	G	.	.	LowGQX	.	GT	./.
chr1	35570261	.	A	.	.	LowGQX	END=35570266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35570267	.	G	.	.	LowGQX	.	GT	./.
chr1	35570268	.	T	.	.	LowGQX	END=35570285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35570286	.	C	.	.	LowGQX	END=35570287	GT	./.
chr1	35570288	.	G	.	.	LowGQX	END=35570293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35570294	.	G	.	.	LowGQX	.	GT	./.
chr1	35570295	.	T	.	.	LowGQX	END=35570298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35570299	.	T	.	.	LowGQX	.	GT	./.
chr1	35570300	.	C	.	.	LowGQX	END=35570319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35570320	.	G	.	.	LowGQX	.	GT	./.
chr1	35570321	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35570322	.	A	.	.	LowGQX	END=35570323	GT	./.
chr1	35570324	.	A	.	.	LowGQX	END=35570333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35570334	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	35570335	.	T	.	.	LowGQX	END=35570346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35570347	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	35570348	.	A	.	.	LowGQX	END=35570359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35570360	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	35570361	.	A	.	.	LowGQX	END=35570367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35570368	.	C	.	.	LowGQX	.	GT	./.
chr1	35570369	.	A	.	.	LowGQX	END=35570372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35575893	.	A	.	.	LowGQX	END=35576050	GT	./.
chr1	35577371	.	A	.	.	LowGQX	END=35577515	GT	./.
chr1	35577660	.	A	.	.	LowGQX	END=35577759	GT	./.
chr1	35578576	.	A	.	.	LowGQX	END=35578626	GT	./.
chr1	35578627	.	G	.	.	LowGQX	END=35578781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35578782	.	G	.	.	LowGQX	.	GT	./.
chr1	35578783	.	G	.	.	LowGQX	END=35578918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35578919	.	A	.	.	LowGQX	END=35580862	GT	./.
chr1	35643578	.	A	.	.	LowGQX	END=35643676	GT	./.
chr1	35643677	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35650015	.	A	.	.	LowGQX	END=35650196	GT	./.
chr1	35652600	.	A	.	.	LowGQX	END=35652725	GT	./.
chr1	35652779	.	T	.	.	LowGQX	END=35652878	GT	./.
chr1	35653572	.	A	.	.	LowGQX	END=35653693	GT	./.
chr1	35654597	.	A	.	.	LowGQX	END=35654696	GT	./.
chr1	35654785	.	A	.	.	LowGQX	END=35654985	GT	./.
chr1	35656097	.	A	.	.	LowGQX	END=35656196	GT	./.
chr1	35656293	.	A	.	.	LowGQX	END=35656311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35656312	.	A	.	.	LowGQX	.	GT	./.
chr1	35656313	.	C	.	.	LowGQX	END=35656364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35656365	.	C	.	.	LowGQX	END=35656398	GT	./.
chr1	35656399	.	A	.	.	LowGQX	END=35656485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35656486	.	A	.	.	LowGQX	.	GT	./.
chr1	35656487	.	C	.	.	LowGQX	END=35656497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35656498	.	G	.	.	LowGQX	END=35656499	GT	./.
chr1	35656500	.	C	.	.	LowGQX	END=35656537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35656538	.	C	.	.	LowGQX	.	GT	./.
chr1	35656539	.	C	.	.	LowGQX	END=35656548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35656549	.	T	.	.	LowGQX	END=35656598	GT	./.
chr1	35656930	.	A	.	.	LowGQX	END=35656992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35656993	.	T	.	.	LowGQX	END=35657132	GT	./.
chr1	35657810	.	C	.	.	LowGQX	END=35658652	GT	./.
chr1	35734558	.	C	.	.	LowGQX	END=35734717	GT	./.
chr1	35790934	.	T	.	.	LowGQX	END=35791033	GT	./.
chr1	35824524	.	A	.	.	LowGQX	END=35824796	GT	./.
chr1	35824797	.	G	.	.	LowGQX	END=35824838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35824839	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	35824840	.	T	.	.	LowGQX	END=35824959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35824960	.	G	.	.	LowGQX	.	GT	./.
chr1	35824961	.	A	.	.	LowGQX	END=35824970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35824971	.	T	.	.	LowGQX	.	GT	./.
chr1	35824972	.	G	.	.	LowGQX	END=35825049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35826776	.	T	.	.	LowGQX	END=35826875	GT	./.
chr1	35827198	.	A	.	.	LowGQX	END=35827392	GT	./.
chr1	35835623	.	T	.	.	LowGQX	END=35835722	GT	./.
chr1	35835971	.	A	.	.	LowGQX	END=35835973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35835974	.	T	.	.	LowGQX	.	GT	./.
chr1	35835975	.	C	.	.	LowGQX	END=35835976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35835977	.	A	.	.	LowGQX	END=35835978	GT	./.
chr1	35835979	.	A	.	.	LowGQX	END=35835981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35835982	.	T	.	.	LowGQX	.	GT	./.
chr1	35835983	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35835984	.	A	.	.	LowGQX	END=35835987	GT	./.
chr1	35835988	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35835989	.	T	.	.	LowGQX	END=35835991	GT	./.
chr1	35835992	.	C	.	.	LowGQX	END=35835995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35835996	.	C	.	.	LowGQX	.	GT	./.
chr1	35835997	.	A	.	.	LowGQX	END=35835999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836000	.	C	.	.	LowGQX	END=35836001	GT	./.
chr1	35836002	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836003	.	C	.	.	LowGQX	.	GT	./.
chr1	35836004	.	A	.	.	LowGQX	END=35836007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836008	.	G	.	.	LowGQX	.	GT	./.
chr1	35836009	.	C	.	.	LowGQX	END=35836011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836012	.	C	.	.	LowGQX	.	GT	./.
chr1	35836013	.	A	.	.	LowGQX	END=35836014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836015	.	C	.	.	LowGQX	.	GT	./.
chr1	35836016	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836017	.	G	.	.	LowGQX	.	GT	./.
chr1	35836018	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836019	.	C	.	.	LowGQX	.	GT	./.
chr1	35836020	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836021	.	T	.	.	LowGQX	END=35836022	GT	./.
chr1	35836023	.	A	.	.	LowGQX	END=35836024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836025	.	T	.	.	LowGQX	END=35836026	GT	./.
chr1	35836027	.	A	.	.	LowGQX	END=35836029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836030	.	T	.	.	LowGQX	.	GT	./.
chr1	35836031	.	G	.	.	LowGQX	END=35836034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836035	.	C	.	.	LowGQX	END=35836037	GT	./.
chr1	35836038	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836039	.	C	.	.	LowGQX	.	GT	./.
chr1	35836040	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836041	.	G	.	.	LowGQX	.	GT	./.
chr1	35836042	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836043	.	T	.	.	LowGQX	END=35836044	GT	./.
chr1	35836045	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836046	.	A	.	.	LowGQX	.	GT	./.
chr1	35836047	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836048	.	C	.	.	LowGQX	END=35836049	GT	./.
chr1	35836050	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836051	.	C	.	.	LowGQX	.	GT	./.
chr1	35836052	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836053	.	G	.	.	LowGQX	END=35836054	GT	./.
chr1	35836055	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836056	.	G	.	.	LowGQX	.	GT	./.
chr1	35836057	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836058	.	T	.	.	LowGQX	.	GT	./.
chr1	35836059	.	C	.	.	LowGQX	END=35836060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836061	.	A	.	.	LowGQX	.	GT	./.
chr1	35836062	.	G	.	.	LowGQX	END=35836065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836066	.	C	.	.	LowGQX	END=35836067	GT	./.
chr1	35836068	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836069	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	35836070	.	T	.	.	LowGQX	END=35836072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35836073	.	T	.	.	LowGQX	END=35836230	GT	./.
chr1	35846858	.	A	.	.	LowGQX	END=35847036	GT	./.
chr1	35847145	.	A	.	.	LowGQX	END=35847361	GT	./.
chr1	35851011	.	T	.	.	LowGQX	END=35851026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35851027	.	T	.	.	LowGQX	.	GT	./.
chr1	35851028	.	T	.	.	LowGQX	END=35851031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35851032	.	T	.	.	LowGQX	.	GT	./.
chr1	35851033	.	C	.	.	LowGQX	END=35851089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35851090	.	C	.	.	LowGQX	.	GT	./.
chr1	35851091	.	T	.	.	LowGQX	END=35851161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35851162	.	T	.	.	LowGQX	END=35851195	GT	./.
chr1	35851673	.	A	.	.	LowGQX	END=35851720	GT	./.
chr1	35851721	.	G	.	.	LowGQX	END=35851792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35852602	.	A	.	.	LowGQX	END=35852881	GT	./.
chr1	35853053	.	A	.	.	LowGQX	END=35853207	GT	./.
chr1	35854489	.	T	.	.	LowGQX	END=35854685	GT	./.
chr1	35855547	.	A	.	.	LowGQX	END=35855701	GT	./.
chr1	35857771	.	T	.	.	LowGQX	END=35857955	GT	./.
chr1	35858166	.	T	.	.	LowGQX	END=35858316	GT	./.
chr1	35859194	.	A	.	.	LowGQX	END=35859197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35859198	.	A	.	.	LowGQX	.	GT	./.
chr1	35859199	.	A	.	.	LowGQX	END=35859204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35859205	.	C	.	.	LowGQX	END=35859302	GT	./.
chr1	35859303	.	T	.	.	LowGQX	END=35859326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35859327	.	A	.	.	LowGQX	.	GT	./.
chr1	35859328	.	G	.	.	LowGQX	END=35859342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35862151	.	A	.	.	LowGQX	END=35862273	GT	./.
chr1	35862976	.	A	.	.	LowGQX	END=35863005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35863006	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	35863007	.	A	.	.	LowGQX	END=35863010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35863011	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	35863012	.	A	.	.	LowGQX	END=35863016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35863017	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	35863018	.	A	.	.	LowGQX	END=35863019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35863020	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	35863021	.	A	.	.	LowGQX	END=35863033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35863034	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	35863035	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35863036	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	35863037	.	T	.	.	LowGQX	END=35863052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35863053	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	35863054	.	A	.	.	LowGQX	END=35863080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35863081	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	35863082	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35863083	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	35863084	.	A	.	.	LowGQX	END=35863088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35863089	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	35863090	.	T	.	.	LowGQX	END=35863094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35863095	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	35863096	.	T	.	.	LowGQX	END=35863112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35863113	.	G	.	.	LowGQX	.	GT	./.
chr1	35863114	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35863115	.	A	.	.	LowGQX	END=35863117	GT	./.
chr1	35863118	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35863119	.	G	.	.	LowGQX	.	GT	./.
chr1	35863120	.	A	.	.	LowGQX	END=35863121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35863122	.	G	.	.	LowGQX	.	GT	./.
chr1	35863123	.	A	.	.	LowGQX	END=35863125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35863126	.	A	.	.	LowGQX	.	GT	./.
chr1	35863127	.	G	.	.	LowGQX	END=35863144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35863145	.	A	.	.	LowGQX	END=35863148	GT	./.
chr1	35863991	.	T	.	.	LowGQX	END=35864090	GT	./.
chr1	35864463	.	A	.	.	LowGQX	END=35864466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35864467	.	C	.	.	LowGQX	.	GT	./.
chr1	35864468	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35864469	.	A	.	.	LowGQX	.	GT	./.
chr1	35864470	.	G	.	.	LowGQX	END=35864474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35864475	.	T	.	.	LowGQX	END=35864547	GT	./.
chr1	35864548	.	G	.	.	LowGQX	END=35864646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35865081	.	A	.	.	LowGQX	END=35865109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35865110	.	A	.	.	LowGQX	END=35865180	GT	./.
chr1	35870622	.	A	.	.	LowGQX	END=35870797	GT	./.
chr1	35870972	.	A	.	.	LowGQX	END=35871071	GT	./.
chr1	35873607	.	A	.	.	LowGQX	END=35873624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35873625	.	G	.	.	LowGQX	.	GT	./.
chr1	35873626	.	A	.	.	LowGQX	END=35873733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35873734	.	T	.	.	LowGQX	END=35873762	GT	./.
chr1	35879571	.	A	.	.	LowGQX	END=35879730	GT	./.
chr1	35881065	.	A	.	.	LowGQX	END=35881317	GT	./.
chr1	35884042	.	A	.	.	LowGQX	END=35884221	GT	./.
chr1	35885069	.	A	.	.	LowGQX	END=35885152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35885153	.	T	.	.	LowGQX	END=35885280	GT	./.
chr1	35900493	.	G	.	.	LowGQX	END=35900598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35900599	.	A	.	.	LowGQX	END=35900684	GT	./.
chr1	35906617	.	A	.	.	LowGQX	END=35906741	GT	./.
chr1	35907843	.	T	.	.	LowGQX	END=35907852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35907853	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	35907854	.	A	.	.	LowGQX	END=35907855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35907856	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	35907857	.	A	.	.	LowGQX	END=35907873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35907874	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	35907875	.	A	.	.	LowGQX	END=35907906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	35907907	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	35907908	.	T	.	.	LowGQX	END=35907942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	35908505	.	A	.	.	LowGQX	END=35908631	GT	./.
chr1	35909760	.	A	.	.	LowGQX	END=35909829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35909830	.	A	.	.	LowGQX	END=35909906	GT	./.
chr1	35913772	.	A	.	.	LowGQX	END=35913935	GT	./.
chr1	35915466	.	A	.	.	LowGQX	END=35915467	GT	./.
chr1	35915468	.	C	.	.	LowGQX	END=35915469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35915470	.	G	.	.	LowGQX	.	GT	./.
chr1	35915471	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35915472	.	T	.	.	LowGQX	.	GT	./.
chr1	35915473	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35915474	.	T	.	.	LowGQX	.	GT	./.
chr1	35915475	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35915476	.	A	.	.	LowGQX	.	GT	./.
chr1	35915477	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35915478	.	C	.	.	LowGQX	END=35915480	GT	./.
chr1	35915481	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35915482	.	A	.	.	LowGQX	END=35915484	GT	./.
chr1	35915485	.	G	.	.	LowGQX	END=35915486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35915487	.	G	.	.	LowGQX	.	GT	./.
chr1	35915488	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35915489	.	T	.	.	LowGQX	END=35915490	GT	./.
chr1	35915491	.	C	.	.	LowGQX	END=35915493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35915494	.	T	.	.	LowGQX	END=35915496	GT	./.
chr1	35915497	.	G	.	.	LowGQX	END=35915498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35915499	.	G	.	.	LowGQX	END=35915500	GT	./.
chr1	35915501	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35915502	.	A	.	.	LowGQX	.	GT	./.
chr1	35915503	.	C	.	.	LowGQX	END=35915504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35915505	.	C	.	.	LowGQX	.	GT	./.
chr1	35915506	.	T	.	.	LowGQX	END=35915507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35915508	.	A	.	.	LowGQX	.	GT	./.
chr1	35915509	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35915510	.	C	.	.	LowGQX	.	GT	./.
chr1	35915511	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35915512	.	T	.	.	LowGQX	.	GT	./.
chr1	35915513	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35915514	.	T	.	.	LowGQX	END=35915515	GT	./.
chr1	35915516	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35915517	.	A	.	.	LowGQX	END=35915608	GT	./.
chr1	35915957	.	A	.	.	LowGQX	END=35916112	GT	./.
chr1	35917227	.	A	.	.	LowGQX	END=35917392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35919156	.	A	.	.	LowGQX	END=35919222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35919223	.	T	.	.	LowGQX	END=35919292	GT	./.
chr1	35919961	.	A	.	.	LowGQX	END=35920088	GT	./.
chr1	35921612	.	A	.	.	LowGQX	END=35921744	GT	./.
chr1	35921745	.	G	.	.	LowGQX	END=35921754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921755	.	G	.	.	LowGQX	END=35921756	GT	./.
chr1	35921757	.	C	.	.	LowGQX	END=35921765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921766	.	G	.	.	LowGQX	END=35921767	GT	./.
chr1	35921768	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921769	.	A	.	.	LowGQX	END=35921770	GT	./.
chr1	35921771	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921772	.	C	.	.	LowGQX	.	GT	./.
chr1	35921773	.	C	.	.	LowGQX	END=35921774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921775	.	C	.	.	LowGQX	.	GT	./.
chr1	35921776	.	A	.	.	LowGQX	END=35921782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921783	.	T	.	.	LowGQX	.	GT	./.
chr1	35921784	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921785	.	C	.	.	LowGQX	.	GT	./.
chr1	35921786	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921787	.	C	.	.	LowGQX	.	GT	./.
chr1	35921788	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921789	.	G	.	.	LowGQX	.	GT	./.
chr1	35921790	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921791	.	C	.	.	LowGQX	.	GT	./.
chr1	35921792	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921793	.	G	.	.	LowGQX	END=35921794	GT	./.
chr1	35921795	.	T	.	.	LowGQX	END=35921796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921797	.	T	.	.	LowGQX	END=35921798	GT	./.
chr1	35921799	.	C	.	.	LowGQX	END=35921802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921803	.	A	.	.	LowGQX	END=35921805	GT	./.
chr1	35921806	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921807	.	G	.	.	LowGQX	END=35921808	GT	./.
chr1	35921809	.	G	.	.	LowGQX	END=35921815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921816	.	G	.	.	LowGQX	.	GT	./.
chr1	35921817	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921818	.	T	.	.	LowGQX	.	GT	./.
chr1	35921819	.	C	.	.	LowGQX	END=35921820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921821	.	A	.	.	LowGQX	.	GT	./.
chr1	35921822	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921823	.	C	.	.	LowGQX	.	GT	./.
chr1	35921824	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921825	.	G	.	.	LowGQX	END=35921827	GT	./.
chr1	35921828	.	T	.	.	LowGQX	END=35921829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921830	.	T	.	.	LowGQX	.	GT	./.
chr1	35921831	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921832	.	C	.	.	LowGQX	END=35921833	GT	./.
chr1	35921834	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921835	.	C	.	.	LowGQX	END=35921836	GT	./.
chr1	35921837	.	G	.	.	LowGQX	END=35921840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921841	.	A	.	.	LowGQX	.	GT	./.
chr1	35921842	.	G	.	.	LowGQX	END=35921843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35921844	.	T	.	.	LowGQX	.	GT	./.
chr1	35925904	.	A	.	.	LowGQX	END=35926040	GT	./.
chr1	35928219	.	C	.	.	LowGQX	END=35928240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35928241	.	A	.	.	LowGQX	.	GT	./.
chr1	35928242	.	G	.	.	LowGQX	END=35928251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35928252	.	G	.	.	LowGQX	.	GT	./.
chr1	35928253	.	C	.	.	LowGQX	END=35928261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35928262	.	C	.	.	LowGQX	END=35928304	GT	./.
chr1	35928305	.	T	.	.	LowGQX	END=35928318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35932203	.	A	.	.	LowGQX	END=35932283	GT	./.
chr1	35932284	.	G	.	.	LowGQX	END=35932302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35936462	.	A	.	.	LowGQX	END=35936563	GT	./.
chr1	35940404	.	A	.	.	LowGQX	END=35940475	GT	./.
chr1	35940476	.	C	.	.	LowGQX	END=35940563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35944565	.	A	.	.	LowGQX	END=35944590	GT	./.
chr1	35944591	.	G	.	.	LowGQX	END=35944623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35944624	.	T	.	.	LowGQX	.	GT	./.
chr1	35944625	.	G	.	.	LowGQX	END=35944629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35944630	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	35944631	.	G	.	.	LowGQX	END=35944669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35944670	.	A	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	35944671	.	G	.	.	LowGQX	END=35944720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	35944721	.	T	.	.	LowGQX	.	GT	./.
chr1	35944722	.	T	.	.	LowGQX	END=35944750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35944751	.	A	.	.	LowGQX	.	GT	./.
chr1	35944752	.	C	.	.	LowGQX	END=35944772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35944773	.	T	.	.	LowGQX	.	GT	./.
chr1	35944774	.	C	.	.	LowGQX	END=35944779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	35944780	.	T	.	.	LowGQX	END=35944815	GT	./.
chr1	35972211	.	A	.	.	LowGQX	END=35972738	GT	./.
chr1	36019949	.	A	.	.	LowGQX	END=36019953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36019954	.	T	.	.	LowGQX	.	GT	./.
chr1	36019955	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36019956	.	G	.	.	LowGQX	.	GT	./.
chr1	36019957	.	A	.	.	LowGQX	END=36019994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36019995	.	A	.	.	LowGQX	.	GT	./.
chr1	36019996	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36019997	.	G	.	10.70	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.05:60:0
chr1	36019998	.	T	.	.	LowGQX	END=36020004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36020005	.	T	.	.	LowGQX	.	GT	./.
chr1	36020006	.	T	.	.	LowGQX	END=36020023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36020024	.	T	.	.	LowGQX	.	GT	./.
chr1	36020025	.	G	.	.	LowGQX	END=36020028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36020029	.	G	.	.	LowGQX	.	GT	./.
chr1	36020030	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36020031	.	C	.	.	LowGQX	.	GT	./.
chr1	36020032	.	A	.	.	LowGQX	END=36020033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36020034	.	T	.	.	LowGQX	.	GT	./.
chr1	36020035	.	A	.	.	LowGQX	END=36020037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36020038	.	A	.	.	LowGQX	END=36020039	GT	./.
chr1	36020040	.	C	.	.	LowGQX	END=36020052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36020053	.	A	.	.	LowGQX	.	GT	./.
chr1	36020054	.	G	.	.	LowGQX	END=36020060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36020061	.	G	.	.	LowGQX	END=36020062	GT	./.
chr1	36020063	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36020064	.	T	.	.	LowGQX	.	GT	./.
chr1	36020065	.	T	.	.	LowGQX	END=36020078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36020079	.	A	.	.	LowGQX	END=36020080	GT	./.
chr1	36020081	.	C	.	.	LowGQX	END=36020088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36020089	.	C	.	.	LowGQX	.	GT	./.
chr1	36020090	.	C	.	.	LowGQX	END=36020092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36020093	.	G	.	.	LowGQX	.	GT	./.
chr1	36020094	.	G	.	.	LowGQX	END=36020114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36020115	.	A	.	.	LowGQX	.	GT	./.
chr1	36023260	.	A	.	.	LowGQX	END=36023319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36023320	.	A	.	.	LowGQX	END=36023518	GT	./.
chr1	36023759	.	T	.	.	LowGQX	END=36023858	GT	./.
chr1	36024706	.	A	.	.	LowGQX	END=36024799	GT	./.
chr1	36024800	.	C	.	.	LowGQX	END=36024850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36025925	.	A	.	.	LowGQX	END=36026079	GT	./.
chr1	36026080	.	C	.	.	LowGQX	END=36026184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36026185	.	G	.	.	LowGQX	END=36026446	GT	./.
chr1	36026447	.	C	.	.	LowGQX	END=36026469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36026470	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36026471	.	T	.	.	LowGQX	END=36026484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36026485	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36026486	.	C	.	.	LowGQX	END=36026497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36026498	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36026499	.	C	.	.	LowGQX	END=36026502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36026503	.	A	.	.	LowGQX	.	GT	./.
chr1	36026504	.	C	.	.	LowGQX	END=36026507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36026508	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36026509	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36026510	.	T	.	.	LowGQX	.	GT	./.
chr1	36026511	.	G	.	.	LowGQX	END=36026518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36026519	.	A	.	.	LowGQX	.	GT	./.
chr1	36026520	.	A	.	.	LowGQX	END=36026523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36026524	.	T	.	.	LowGQX	.	GT	./.
chr1	36026525	.	A	.	.	LowGQX	END=36026539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36026540	.	C	.	.	LowGQX	.	GT	./.
chr1	36026541	.	C	.	.	LowGQX	END=36026549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36026550	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36026551	.	C	.	.	LowGQX	END=36026553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36026554	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36026555	.	T	.	.	LowGQX	END=36026559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36026560	.	G	.	.	LowGQX	.	GT	./.
chr1	36026561	.	G	.	.	LowGQX	END=36026564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36026565	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36026566	.	A	.	.	LowGQX	END=36026569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36026570	.	T	.	.	LowGQX	.	GT	./.
chr1	36026571	.	G	.	.	LowGQX	END=36026574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36026575	.	T	.	.	LowGQX	.	GT	./.
chr1	36026576	.	C	.	.	LowGQX	END=36026596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36026597	.	T	.	.	LowGQX	END=36026897	GT	./.
chr1	36027991	.	A	.	.	LowGQX	END=36028031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36028032	.	T	.	.	LowGQX	.	GT	./.
chr1	36028033	.	C	.	.	LowGQX	END=36028043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36028044	.	C	.	.	LowGQX	END=36028236	GT	./.
chr1	36028801	.	A	.	.	LowGQX	END=36029029	GT	./.
chr1	36029366	.	A	.	.	LowGQX	END=36029403	GT	./.
chr1	36029404	.	C	.	.	LowGQX	END=36029512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36030799	.	C	.	.	LowGQX	END=36030972	GT	./.
chr1	36030973	.	G	.	.	LowGQX	END=36031058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36031059	.	G	.	.	LowGQX	.	GT	./.
chr1	36031060	.	C	.	.	LowGQX	END=36031108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36031109	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36031110	.	T	.	.	LowGQX	END=36031135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36031136	.	C	.	.	LowGQX	.	GT	./.
chr1	36031137	.	A	.	.	LowGQX	END=36031148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36031149	.	T	.	.	LowGQX	END=36031150	GT	./.
chr1	36031151	.	G	.	.	LowGQX	END=36031152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36031153	.	G	.	.	LowGQX	.	GT	./.
chr1	36031154	.	C	.	.	LowGQX	END=36031164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36031165	.	C	.	.	LowGQX	END=36031332	GT	./.
chr1	36032396	.	T	.	.	LowGQX	END=36032495	GT	./.
chr1	36039143	.	C	.	.	LowGQX	END=36039173	GT	./.
chr1	36039174	.	G	.	.	LowGQX	END=36039188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36039189	.	A	.	.	LowGQX	.	GT	./.
chr1	36039190	.	C	.	.	LowGQX	END=36039242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36039526	.	A	.	.	LowGQX	END=36040014	GT	./.
chr1	36040526	.	A	.	.	LowGQX	END=36040533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36040534	.	C	.	.	LowGQX	.	GT	./.
chr1	36040535	.	C	.	.	LowGQX	END=36040625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36042938	.	T	.	.	LowGQX	.	GT	./.
chr1	36042939	.	C	.	.	LowGQX	END=36042950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36042951	.	C	.	.	LowGQX	.	GT	./.
chr1	36042952	.	G	.	.	LowGQX	END=36042953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36042954	.	C	.	.	LowGQX	.	GT	./.
chr1	36042955	.	G	.	.	LowGQX	END=36042963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36042964	.	A	.	.	LowGQX	.	GT	./.
chr1	36042965	.	G	.	.	LowGQX	END=36042972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36042973	.	G	.	.	LowGQX	.	GT	./.
chr1	36042974	.	G	.	.	LowGQX	END=36042978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36042979	.	G	.	.	LowGQX	END=36042981	GT	./.
chr1	36042982	.	T	.	.	LowGQX	END=36042989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36042990	.	C	.	.	LowGQX	.	GT	./.
chr1	36042991	.	T	.	.	LowGQX	END=36042992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36042993	.	C	.	.	LowGQX	.	GT	./.
chr1	36042994	.	T	.	.	LowGQX	END=36043093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36053929	.	A	.	.	LowGQX	END=36054155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36055529	.	A	.	.	LowGQX	END=36055651	GT	./.
chr1	36056233	.	A	.	.	LowGQX	END=36056378	GT	./.
chr1	36059983	.	T	.	.	LowGQX	END=36060002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36060003	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36060004	.	C	.	.	LowGQX	END=36060034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36060035	.	C	.	.	LowGQX	END=36060200	GT	./.
chr1	36060201	.	A	.	.	LowGQX	END=36060254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36060255	.	A	G	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	36060256	.	G	.	.	LowGQX	END=36060282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36068866	.	T	.	.	LowGQX	END=36068977	GT	./.
chr1	36070809	.	T	.	.	LowGQX	END=36070900	GT	./.
chr1	36070901	.	G	.	.	LowGQX	END=36070961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36074845	.	A	.	.	LowGQX	END=36075011	GT	./.
chr1	36096861	.	G	.	.	LowGQX	END=36096960	GT	./.
chr1	36101909	.	A	.	.	LowGQX	END=36101968	GT	./.
chr1	36101969	.	G	.	.	LowGQX	END=36101974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36101975	.	A	.	.	LowGQX	.	GT	./.
chr1	36101976	.	G	.	.	LowGQX	END=36101986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36101987	.	A	.	.	LowGQX	.	GT	./.
chr1	36101988	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36101989	.	A	.	.	LowGQX	.	GT	./.
chr1	36101990	.	C	.	.	LowGQX	END=36102010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36102011	.	C	.	.	LowGQX	.	GT	./.
chr1	36102012	.	A	.	.	LowGQX	END=36102035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36106939	.	T	.	.	LowGQX	END=36106990	GT	./.
chr1	36106991	.	C	.	.	LowGQX	END=36107000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36107001	.	G	.	.	LowGQX	.	GT	./.
chr1	36107002	.	T	.	.	LowGQX	END=36107005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36107006	.	G	.	.	LowGQX	.	GT	./.
chr1	36107007	.	G	.	.	LowGQX	END=36107011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36107012	.	G	.	.	LowGQX	.	GT	./.
chr1	36107013	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36107014	.	A	.	.	LowGQX	.	GT	./.
chr1	36107015	.	T	.	.	LowGQX	END=36107026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36107027	.	A	.	.	LowGQX	.	GT	./.
chr1	36107028	.	C	.	.	LowGQX	END=36107029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36107030	.	C	.	.	LowGQX	END=36107031	GT	./.
chr1	36107032	.	A	.	.	LowGQX	END=36107037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36107038	.	G	.	.	LowGQX	.	GT	./.
chr1	36181231	.	C	.	.	LowGQX	END=36181526	GT	./.
chr1	36181527	.	C	.	.	LowGQX	END=36181614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36181615	.	G	.	.	LowGQX	END=36181924	GT	./.
chr1	36186487	.	C	.	.	LowGQX	END=36186586	GT	./.
chr1	36202095	.	T	.	.	LowGQX	END=36202161	GT	./.
chr1	36202162	.	G	.	.	LowGQX	END=36202192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36202193	.	A	.	.	LowGQX	.	GT	./.
chr1	36202194	.	C	.	.	LowGQX	END=36202209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36202513	.	A	.	.	LowGQX	END=36202537	GT	./.
chr1	36202538	.	C	.	.	LowGQX	END=36202542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36202543	.	T	.	.	LowGQX	.	GT	./.
chr1	36202544	.	C	.	.	LowGQX	END=36202594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36202595	.	G	.	.	LowGQX	.	GT	./.
chr1	36202596	.	A	.	.	LowGQX	END=36202605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36202606	.	T	.	.	LowGQX	.	GT	./.
chr1	36202607	.	T	.	.	LowGQX	END=36202611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36202612	.	T	.	.	LowGQX	.	GT	./.
chr1	36202613	.	C	.	.	LowGQX	END=36202630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36202631	.	T	.	.	LowGQX	.	GT	./.
chr1	36202632	.	C	.	.	LowGQX	END=36202678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36202932	.	C	.	.	LowGQX	END=36203031	GT	./.
chr1	36203591	.	A	.	.	LowGQX	END=36203700	GT	./.
chr1	36204054	.	A	.	.	LowGQX	END=36204185	GT	./.
chr1	36204735	.	A	.	.	LowGQX	END=36204860	GT	./.
chr1	36204964	.	A	.	.	LowGQX	END=36205132	GT	./.
chr1	36208740	.	A	.	.	LowGQX	END=36208844	GT	./.
chr1	36209044	.	C	.	.	LowGQX	END=36209143	GT	./.
chr1	36211050	.	A	.	.	LowGQX	END=36211165	GT	./.
chr1	36212365	.	A	.	.	LowGQX	END=36212524	GT	./.
chr1	36212525	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36212526	.	T	.	.	LowGQX	.	GT	./.
chr1	36212527	.	A	.	.	LowGQX	END=36212531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36212532	.	C	.	.	LowGQX	.	GT	./.
chr1	36212533	.	C	.	.	LowGQX	END=36212542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36212543	.	C	.	.	LowGQX	.	GT	./.
chr1	36212544	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36212545	.	A	.	.	LowGQX	.	GT	./.
chr1	36212546	.	G	.	.	LowGQX	END=36212548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36212549	.	T	.	.	LowGQX	.	GT	./.
chr1	36212550	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36212551	.	C	.	.	LowGQX	.	GT	./.
chr1	36212552	.	A	.	.	LowGQX	END=36212553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36212554	.	A	.	.	LowGQX	.	GT	./.
chr1	36212555	.	G	.	.	LowGQX	END=36212557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36212558	.	T	.	.	LowGQX	END=36212559	GT	./.
chr1	36212560	.	G	.	.	LowGQX	END=36212561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36212562	.	A	.	.	LowGQX	END=36212563	GT	./.
chr1	36212564	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36212565	.	G	.	.	LowGQX	END=36212567	GT	./.
chr1	36212568	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36212569	.	C	.	.	LowGQX	.	GT	./.
chr1	36212570	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36212571	.	T	.	.	LowGQX	.	GT	./.
chr1	36212572	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36212573	.	T	.	.	LowGQX	.	GT	./.
chr1	36212574	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36212575	.	G	.	.	LowGQX	.	GT	./.
chr1	36212576	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36212577	.	T	.	.	LowGQX	.	GT	./.
chr1	36212578	.	T	.	.	LowGQX	END=36212580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36212581	.	A	.	.	LowGQX	END=36212582	GT	./.
chr1	36212583	.	C	.	.	LowGQX	END=36212584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36212585	.	T	.	.	LowGQX	.	GT	./.
chr1	36212586	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36212587	.	T	.	.	LowGQX	.	GT	./.
chr1	36212588	.	A	.	.	LowGQX	END=36212591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36212592	.	A	.	.	LowGQX	.	GT	./.
chr1	36212593	.	C	.	.	LowGQX	END=36212595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36213506	.	A	.	.	LowGQX	END=36213664	GT	./.
chr1	36214004	.	A	.	.	LowGQX	END=36214207	GT	./.
chr1	36214381	.	T	.	.	LowGQX	END=36214480	GT	./.
chr1	36215051	.	C	.	.	LowGQX	END=36215150	GT	./.
chr1	36215232	.	A	.	.	LowGQX	END=36215414	GT	./.
chr1	36216849	.	A	.	.	LowGQX	END=36217109	GT	./.
chr1	36219334	.	G	.	.	LowGQX	END=36219428	GT	./.
chr1	36219429	.	T	.	.	LowGQX	END=36219446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36219447	.	A	.	.	LowGQX	.	GT	./.
chr1	36219448	.	C	.	.	LowGQX	END=36219539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36225941	.	A	.	.	LowGQX	END=36225976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36225977	.	A	.	.	LowGQX	.	GT	./.
chr1	36225978	.	T	.	.	LowGQX	END=36226009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226010	.	A	.	.	LowGQX	.	GT	./.
chr1	36226011	.	A	.	.	LowGQX	END=36226012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226013	.	A	.	.	LowGQX	.	GT	./.
chr1	36226014	.	T	.	.	LowGQX	END=36226026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226027	.	G	.	.	LowGQX	END=36226054	GT	./.
chr1	36226055	.	C	.	.	LowGQX	END=36226059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226060	.	T	.	.	LowGQX	.	GT	./.
chr1	36226061	.	T	.	.	LowGQX	END=36226064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226065	.	G	.	.	LowGQX	.	GT	./.
chr1	36226066	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226067	.	T	.	.	LowGQX	.	GT	./.
chr1	36226068	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226069	.	G	.	.	LowGQX	.	GT	./.
chr1	36226070	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226071	.	C	.	.	LowGQX	END=36226072	GT	./.
chr1	36226073	.	A	.	.	LowGQX	END=36226079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226080	.	G	.	.	LowGQX	.	GT	./.
chr1	36226081	.	A	.	.	LowGQX	END=36226086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226087	.	T	.	.	LowGQX	.	GT	./.
chr1	36226088	.	A	.	.	LowGQX	END=36226093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226094	.	C	.	.	LowGQX	.	GT	./.
chr1	36226095	.	T	.	.	LowGQX	END=36226097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226098	.	T	.	.	LowGQX	.	GT	./.
chr1	36226099	.	C	.	.	LowGQX	END=36226103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226104	.	T	.	.	LowGQX	.	GT	./.
chr1	36226105	.	C	.	.	LowGQX	END=36226107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226108	.	C	.	.	LowGQX	.	GT	./.
chr1	36226109	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226110	.	A	.	.	LowGQX	.	GT	./.
chr1	36226111	.	C	.	.	LowGQX	END=36226117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226118	.	A	.	.	LowGQX	END=36226119	GT	./.
chr1	36226120	.	C	.	.	LowGQX	END=36226125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226126	.	C	.	.	LowGQX	.	GT	./.
chr1	36226127	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226128	.	T	.	.	LowGQX	.	GT	./.
chr1	36226129	.	C	.	.	LowGQX	END=36226135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226136	.	T	.	.	LowGQX	.	GT	./.
chr1	36226137	.	T	.	.	LowGQX	END=36226154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226155	.	A	.	.	LowGQX	.	GT	./.
chr1	36226156	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226157	.	G	.	.	LowGQX	.	GT	./.
chr1	36226158	.	G	.	.	LowGQX	END=36226166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226167	.	T	.	.	LowGQX	.	GT	./.
chr1	36226168	.	C	.	.	LowGQX	END=36226170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226171	.	A	.	.	LowGQX	.	GT	./.
chr1	36226172	.	T	.	.	LowGQX	END=36226188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226189	.	C	.	.	LowGQX	.	GT	./.
chr1	36226190	.	C	.	.	LowGQX	END=36226200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226201	.	C	.	.	LowGQX	.	GT	./.
chr1	36226202	.	A	.	.	LowGQX	END=36226203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36226204	.	T	.	.	LowGQX	END=36226519	GT	./.
chr1	36226695	.	A	.	.	LowGQX	END=36226705	GT	./.
chr1	36226706	.	G	.	.	LowGQX	END=36226807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36227586	.	T	.	.	LowGQX	END=36227615	GT	./.
chr1	36227616	.	G	.	.	LowGQX	END=36227685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36227994	.	C	.	.	LowGQX	END=36228093	GT	./.
chr1	36228759	.	G	.	.	LowGQX	END=36228948	GT	./.
chr1	36229865	.	A	.	.	LowGQX	END=36229880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36229881	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	36229882	.	C	.	.	LowGQX	END=36229909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	36229910	.	A	G	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=-0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr1	36229911	.	T	.	.	LowGQX	END=36229922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	36229923	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	36229924	.	T	.	.	LowGQX	END=36229979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	36229980	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	36229981	.	A	.	.	LowGQX	END=36230021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36230022	.	C	.	.	LowGQX	.	GT	./.
chr1	36230023	.	T	.	.	LowGQX	END=36230025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36230026	.	A	.	.	LowGQX	.	GT	./.
chr1	36230027	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36230028	.	A	.	.	LowGQX	END=36230061	GT	./.
chr1	36230062	.	T	.	.	LowGQX	END=36230070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36230071	.	C	.	.	LowGQX	END=36230072	GT	./.
chr1	36230073	.	C	.	.	LowGQX	END=36230178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36230179	.	C	.	.	LowGQX	.	GT	./.
chr1	36230180	.	T	.	.	LowGQX	END=36230203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36230204	.	T	.	.	LowGQX	.	GT	./.
chr1	36230205	.	C	.	.	LowGQX	END=36230211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36230212	.	A	.	.	LowGQX	END=36230317	GT	./.
chr1	36230817	.	A	.	.	LowGQX	END=36230820	GT	./.
chr1	36230821	.	C	.	.	LowGQX	END=36230915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36230916	.	T	.	.	LowGQX	.	GT	./.
chr1	36230917	.	T	.	.	LowGQX	END=36230929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36235410	.	C	.	.	LowGQX	END=36235509	GT	./.
chr1	36273917	.	A	.	.	LowGQX	END=36274076	GT	./.
chr1	36282481	.	A	.	.	LowGQX	END=36282650	GT	./.
chr1	36288461	.	A	.	.	LowGQX	END=36288585	GT	./.
chr1	36290912	.	A	.	.	LowGQX	END=36291083	GT	./.
chr1	36291084	.	T	.	.	LowGQX	END=36291097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36291278	.	A	.	.	LowGQX	END=36291279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	36291280	.	G	.	.	LowGQX	END=36291305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	36291306	.	T	.	.	LowGQX	END=36291310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	36291311	.	C	.	.	LowGQX	END=36291418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	36291525	.	A	.	.	LowGQX	END=36291663	GT	./.
chr1	36292283	.	T	.	.	LowGQX	END=36292442	GT	./.
chr1	36297026	.	A	.	.	LowGQX	END=36297177	GT	./.
chr1	36297411	.	A	.	.	LowGQX	END=36297534	GT	./.
chr1	36297656	.	A	.	.	LowGQX	END=36297788	GT	./.
chr1	36298036	.	A	.	.	LowGQX	END=36298173	GT	./.
chr1	36299589	.	A	.	.	LowGQX	END=36299788	GT	./.
chr1	36301433	.	A	.	.	LowGQX	END=36301596	GT	./.
chr1	36306764	.	A	.	.	PASS	END=36306821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	36306822	.	C	.	.	PASS	END=36306860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	36306861	.	T	.	.	PASS	END=36306885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	36306886	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:36:60
chr1	36306887	.	C	.	.	PASS	END=36306892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	36306893	.	T	.	.	PASS	END=36306901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	36306902	.	G	.	.	PASS	END=36306914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	36306915	.	C	.	.	PASS	END=36306921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	36306922	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	36306923	.	C	.	.	PASS	END=36306951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	36306952	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	36306953	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	36306954	.	A	.	.	LowGQX	END=36306955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	36306956	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	36306957	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	36306958	.	G	.	.	PASS	END=36306959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	36306960	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	36306961	.	C	.	.	LowGQX	END=36306965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	36306966	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	36306967	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	36306968	.	G	.	.	LowGQX	END=36306970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	36306971	.	C	.	.	LowGQX	END=36306983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	36306984	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	36306985	.	T	.	.	LowGQX	END=36307006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	36307007	.	T	.	.	LowGQX	END=36307042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	36307043	.	T	.	.	LowGQX	END=36307048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36307049	.	C	.	.	LowGQX	END=36307083	GT	./.
chr1	36307215	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307216	.	G	.	.	LowGQX	END=36307218	GT	./.
chr1	36307219	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307220	.	G	.	.	LowGQX	.	GT	./.
chr1	36307221	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307222	.	T	.	.	LowGQX	END=36307224	GT	./.
chr1	36307225	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307226	.	C	.	.	LowGQX	.	GT	./.
chr1	36307227	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307228	.	A	.	.	LowGQX	END=36307229	GT	./.
chr1	36307230	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307231	.	A	.	.	LowGQX	END=36307233	GT	./.
chr1	36307234	.	A	.	.	LowGQX	END=36307235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307236	.	T	.	.	LowGQX	END=36307238	GT	./.
chr1	36307239	.	C	.	.	LowGQX	END=36307241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307242	.	T	.	.	LowGQX	END=36307243	GT	./.
chr1	36307244	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307245	.	G	.	.	LowGQX	.	GT	./.
chr1	36307246	.	A	.	.	LowGQX	END=36307247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307248	.	A	.	.	LowGQX	END=36307249	GT	./.
chr1	36307250	.	G	.	.	LowGQX	END=36307252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307253	.	T	.	.	LowGQX	END=36307260	GT	./.
chr1	36307261	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307262	.	T	.	.	LowGQX	END=36307264	GT	./.
chr1	36307265	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307266	.	A	.	.	LowGQX	.	GT	./.
chr1	36307267	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307268	.	G	.	.	LowGQX	END=36307275	GT	./.
chr1	36307276	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307277	.	C	.	.	LowGQX	.	GT	./.
chr1	36307278	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307279	.	G	.	.	LowGQX	.	GT	./.
chr1	36307280	.	C	.	.	LowGQX	END=36307283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307284	.	G	.	.	LowGQX	.	GT	./.
chr1	36307285	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307286	.	A	.	.	LowGQX	END=36307289	GT	./.
chr1	36307290	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307291	.	T	.	.	LowGQX	.	GT	./.
chr1	36307292	.	T	.	.	LowGQX	END=36307294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307295	.	A	.	.	LowGQX	.	GT	./.
chr1	36307296	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307297	.	T	.	.	LowGQX	.	GT	./.
chr1	36307298	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307299	.	T	.	.	LowGQX	.	GT	./.
chr1	36307300	.	G	.	.	LowGQX	END=36307301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307302	.	T	.	.	LowGQX	END=36307303	GT	./.
chr1	36307304	.	C	.	.	LowGQX	END=36307308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307309	.	A	.	.	LowGQX	END=36307312	GT	./.
chr1	36307313	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307314	.	A	.	.	LowGQX	END=36307315	GT	./.
chr1	36307316	.	C	.	.	LowGQX	END=36307332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307333	.	T	.	.	LowGQX	END=36307334	GT	./.
chr1	36307335	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36307336	.	A	.	.	LowGQX	END=36307353	GT	./.
chr1	36315756	.	A	.	.	LowGQX	END=36315914	GT	./.
chr1	36316453	.	A	.	.	LowGQX	END=36316656	GT	./.
chr1	36319096	.	A	.	.	LowGQX	END=36319208	GT	./.
chr1	36348926	.	G	.	.	LowGQX	END=36349085	GT	./.
chr1	36354026	.	A	.	.	LowGQX	END=36354213	GT	./.
chr1	36358156	.	A	.	.	PASS	END=36358208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	36358209	.	T	.	.	PASS	END=36358258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	36358259	.	T	.	.	PASS	END=36358280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	36358696	.	A	.	.	PASS	END=36358730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	36358731	.	A	.	.	PASS	END=36358844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	36358845	.	C	.	.	PASS	END=36358881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	36359273	.	A	.	.	PASS	END=36359282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	36359283	.	C	.	.	PASS	END=36359413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr1	36359596	.	A	.	.	PASS	END=36359616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	36359617	.	A	.	.	PASS	END=36359675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	36359676	.	G	.	.	PASS	END=36359774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	36359910	.	T	.	.	PASS	END=36359943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	36359944	.	A	.	.	PASS	END=36359990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	36359991	.	C	.	.	PASS	END=36360009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	36360721	.	A	.	.	PASS	END=36360743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:91:60
chr1	36360744	.	T	.	.	PASS	END=36360758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	36360759	.	G	.	.	PASS	END=36360766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	36360767	.	T	.	.	PASS	END=36360854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	36360855	.	C	.	.	PASS	END=36360872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	36367073	.	A	.	.	PASS	END=36367082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	36367083	.	C	.	.	PASS	END=36367182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	36367183	.	A	.	.	PASS	END=36367196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	36367497	.	G	.	.	PASS	END=36367510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	36367511	.	C	.	.	PASS	END=36367548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	36367549	.	A	.	.	PASS	END=36367639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	36367640	.	T	.	.	PASS	END=36367672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	36367673	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:156:99:60
chr1	36367803	.	A	.	.	PASS	END=36367857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	36367858	.	G	.	.	PASS	END=36367930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	36367931	.	G	.	.	PASS	END=36367940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	36372534	.	A	.	.	PASS	END=36372573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	36372574	.	C	.	.	PASS	END=36372680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	36372681	.	C	.	.	PASS	END=36372722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	36379441	.	A	.	.	PASS	END=36379464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	36379465	.	T	.	.	PASS	END=36379537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	36379538	.	A	.	.	PASS	END=36379604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	36379781	.	T	.	.	PASS	END=36379861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	36379862	.	C	.	.	PASS	END=36379880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	36380947	.	A	.	.	PASS	END=36380975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	36380976	.	A	.	.	PASS	END=36381031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	36381032	.	C	.	.	PASS	END=36381123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	36381124	.	C	.	.	PASS	END=36381145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	36383192	.	A	.	.	PASS	END=36383209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	36383210	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:69:60
chr1	36383211	.	A	.	.	PASS	END=36383215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	36383216	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:73:60
chr1	36383217	.	C	.	.	PASS	END=36383275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	36383276	.	T	.	.	PASS	END=36383330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	36383921	.	A	.	.	PASS	END=36383952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	36383953	.	A	.	.	PASS	END=36384025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	36384026	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:75:99:60
chr1	36384654	.	A	.	.	PASS	END=36384681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	36384682	.	T	.	.	PASS	END=36384812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	36384813	.	C	.	.	PASS	END=36384857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	36385098	.	A	.	.	PASS	END=36385192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	36385193	.	C	.	.	PASS	END=36385210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	36396988	.	G	.	.	LowGQX	END=36396998	GT	./.
chr1	36396999	.	C	.	.	LowGQX	END=36397068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36397069	.	G	.	.	LowGQX	.	GT	./.
chr1	36397070	.	G	.	.	LowGQX	END=36397087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36411291	.	A	.	.	LowGQX	END=36411296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	36411297	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	36411298	.	G	.	.	LowGQX	END=36411463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36411464	.	G	.	.	LowGQX	.	GT	./.
chr1	36411465	.	G	.	.	LowGQX	END=36411466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36432554	.	A	.	.	LowGQX	END=36432586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36432587	.	A	.	.	LowGQX	.	GT	./.
chr1	36432588	.	A	.	.	LowGQX	END=36432612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36432613	.	A	.	.	LowGQX	.	GT	./.
chr1	36432614	.	C	.	.	LowGQX	END=36432678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36437623	.	A	.	.	LowGQX	END=36437759	GT	./.
chr1	36437760	.	G	.	.	LowGQX	END=36437835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36438974	.	A	.	.	LowGQX	END=36439114	GT	./.
chr1	36448188	.	G	.	.	LowGQX	END=36448287	GT	./.
chr1	36469900	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469901	.	A	.	.	LowGQX	END=36469903	GT	./.
chr1	36469904	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469905	.	A	.	.	LowGQX	END=36469906	GT	./.
chr1	36469907	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469908	.	C	.	.	LowGQX	.	GT	./.
chr1	36469909	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469910	.	T	.	.	LowGQX	END=36469915	GT	./.
chr1	36469916	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469917	.	G	.	.	LowGQX	.	GT	./.
chr1	36469918	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469919	.	A	.	.	LowGQX	.	GT	./.
chr1	36469920	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469921	.	T	.	.	LowGQX	END=36469922	GT	./.
chr1	36469923	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469924	.	T	.	.	LowGQX	.	GT	./.
chr1	36469925	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469926	.	G	.	.	LowGQX	.	GT	./.
chr1	36469927	.	T	.	.	LowGQX	END=36469929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469930	.	T	.	.	LowGQX	.	GT	./.
chr1	36469931	.	T	.	.	LowGQX	END=36469933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469934	.	C	.	.	LowGQX	.	GT	./.
chr1	36469935	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469936	.	T	.	.	LowGQX	END=36469937	GT	./.
chr1	36469938	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469939	.	T	.	.	LowGQX	END=36469943	GT	./.
chr1	36469944	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469945	.	C	.	.	LowGQX	.	GT	./.
chr1	36469946	.	T	.	.	LowGQX	END=36469947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469948	.	C	.	.	LowGQX	END=36469950	GT	./.
chr1	36469951	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469952	.	T	.	.	LowGQX	END=36469958	GT	./.
chr1	36469959	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469960	.	A	.	.	LowGQX	END=36469961	GT	./.
chr1	36469962	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469963	.	A	.	.	LowGQX	.	GT	./.
chr1	36469964	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469965	.	G	.	.	LowGQX	END=36469967	GT	./.
chr1	36469968	.	C	.	.	LowGQX	END=36469969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469970	.	A	.	.	LowGQX	END=36469971	GT	./.
chr1	36469972	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469973	.	T	.	.	LowGQX	END=36469974	GT	./.
chr1	36469975	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469976	.	A	.	.	LowGQX	END=36469983	GT	./.
chr1	36469984	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469985	.	C	.	.	LowGQX	END=36469988	GT	./.
chr1	36469989	.	T	.	.	LowGQX	END=36469992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469993	.	A	.	.	LowGQX	END=36469996	GT	./.
chr1	36469997	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36469998	.	C	.	.	LowGQX	.	GT	./.
chr1	36469999	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36470000	.	T	.	.	LowGQX	END=36470001	GT	./.
chr1	36470002	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36470003	.	T	.	.	LowGQX	END=36470078	GT	./.
chr1	36474285	.	G	.	.	LowGQX	END=36474384	GT	./.
chr1	36474456	.	A	.	.	LowGQX	END=36474647	GT	./.
chr1	36475074	.	A	.	.	LowGQX	END=36475243	GT	./.
chr1	36479229	.	A	.	.	LowGQX	END=36479355	GT	./.
chr1	36479514	.	A	.	.	LowGQX	END=36479651	GT	./.
chr1	36492713	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:60
chr1	36492714	.	G	.	.	LowGQX	END=36492717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	36492718	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr1	36492719	.	T	.	.	LowGQX	END=36492722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	36492723	.	C	.	.	LowGQX	END=36492730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:60
chr1	36492731	.	C	.	.	LowGQX	END=36492733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	36492734	.	C	.	.	LowGQX	END=36492742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	36492743	.	T	.	.	LowGQX	END=36492744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	36492745	.	T	.	.	LowGQX	END=36492747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	36492748	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	36492749	.	G	.	.	LowGQX	END=36492752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	36492753	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	36492754	.	A	.	.	LowGQX	END=36492761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	36492762	.	C	T	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.05;ReadPosRankSum=0.736;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.30:30,0,53:60:3:0.333
chr1	36492763	.	C	.	.	LowGQX	END=36492766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	36492767	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	36492768	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	36492769	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	36492770	.	G	.	.	LowGQX	END=36492777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	36492778	.	A	.	.	LowGQX	END=36492783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36492784	.	C	.	.	LowGQX	END=36492788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	36492789	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	36492790	.	A	.	.	LowGQX	END=36492792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	36492793	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	36492794	.	G	.	.	LowGQX	END=36492867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	36492868	.	C	.	.	LowGQX	END=36492874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	36492875	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	36492876	.	T	.	.	LowGQX	END=36492880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	36492881	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	36492882	.	G	.	.	LowGQX	END=36492883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	36492884	.	A	.	.	LowGQX	END=36492888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	36492889	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	36492890	.	C	.	.	LowGQX	END=36492894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	36492895	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	36492896	.	T	.	.	LowGQX	END=36492898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	36492899	.	G	.	.	LowGQX	END=36492901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	36499773	.	A	.	.	LowGQX	END=36499783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36499784	.	A	.	.	LowGQX	.	GT	./.
chr1	36499785	.	A	.	.	LowGQX	END=36499790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36499791	.	A	.	.	LowGQX	END=36499867	GT	./.
chr1	36499868	.	C	.	.	LowGQX	END=36499891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36499892	.	T	.	.	LowGQX	.	GT	./.
chr1	36499893	.	T	.	.	LowGQX	END=36499914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36499915	.	A	.	.	LowGQX	.	GT	./.
chr1	36499916	.	T	.	.	LowGQX	END=36499936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36501774	.	T	.	.	LowGQX	END=36501873	GT	./.
chr1	36505389	.	A	.	.	LowGQX	END=36505587	GT	./.
chr1	36505906	.	A	.	.	LowGQX	END=36506044	GT	./.
chr1	36509046	.	A	.	.	LowGQX	END=36509151	GT	./.
chr1	36520545	.	A	.	.	LowGQX	END=36520554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36520555	.	T	.	.	LowGQX	.	GT	./.
chr1	36520556	.	C	.	.	LowGQX	END=36520559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36520560	.	C	.	.	LowGQX	.	GT	./.
chr1	36520561	.	T	.	.	LowGQX	END=36520577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36520578	.	T	.	.	LowGQX	END=36520748	GT	./.
chr1	36521236	.	A	.	.	LowGQX	END=36521348	GT	./.
chr1	36550472	.	T	.	.	PASS	END=36550487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:83:60
chr1	36550488	.	G	.	.	PASS	END=36550533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	36550534	.	G	.	.	PASS	END=36550654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	36550655	.	C	.	.	PASS	END=36550736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	36550737	.	C	.	.	PASS	END=36550807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	36550808	.	G	.	.	PASS	END=36550881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	36550882	.	T	.	.	PASS	END=36550904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	36550905	.	T	.	.	PASS	END=36550933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	36550934	.	C	.	.	PASS	END=36550940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	36551277	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	36551278	.	T	.	.	PASS	END=36551279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	36551280	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr1	36551281	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	36551282	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	36551283	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	36551284	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	36551285	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	36551286	.	A	.	.	LowGQX	END=36551288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	36551289	.	T	.	.	PASS	END=36551295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	36551296	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	36551297	.	T	.	.	PASS	END=36551298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	36551299	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	36551300	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	36551301	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	36551302	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	36551303	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	36551304	.	A	.	.	PASS	END=36551309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	36551310	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	36551311	.	G	.	.	PASS	END=36551312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	36551313	.	G	.	.	LowGQX	END=36551317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	36551318	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	36551319	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	36551320	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	36551321	.	A	.	.	LowGQX	END=36551329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	36551330	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	36551331	.	G	.	.	LowGQX	END=36551334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr1	36551335	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	36551336	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	36551337	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	36551338	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	36551339	.	T	.	.	PASS	END=36551341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	36551342	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	36551343	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	36551344	.	C	.	.	PASS	END=36551365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	36551366	.	C	.	.	PASS	END=36551376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	36551386	.	G	.	.	PASS	END=36551392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	36551393	.	T	.	.	PASS	END=36551398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	36551399	.	A	.	.	PASS	END=36551410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	36551411	.	G	.	.	PASS	END=36551425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	36551426	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:45:60
chr1	36551427	.	T	.	.	PASS	END=36551454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	36551455	.	C	.	.	PASS	END=36551508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:92:60
chr1	36551509	.	C	.	.	PASS	END=36551578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	36551579	.	A	.	.	PASS	END=36551618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:78:60
chr1	36551619	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:73:60
chr1	36551620	.	A	.	.	PASS	END=36551622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	36551623	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:73:60
chr1	36551624	.	A	.	.	PASS	END=36551627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	36551628	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:67:60
chr1	36551629	.	T	.	.	PASS	END=36551634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	36551635	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:72:60
chr1	36551636	.	A	.	.	PASS	END=36551638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	36551639	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:55:60
chr1	36551640	.	C	.	.	PASS	END=36551651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	36551652	.	A	.	.	PASS	END=36551662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	36551663	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:30:60
chr1	36551664	.	C	.	.	PASS	END=36551669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	36551670	.	T	.	.	PASS	END=36551685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	36551686	.	G	.	.	PASS	END=36551688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	36551689	.	T	.	.	PASS	END=36551693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	36552254	.	C	.	.	PASS	END=36552259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	36552260	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:54:60
chr1	36552261	.	T	.	.	PASS	END=36552281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	36552282	.	G	.	.	PASS	END=36552298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	36552299	.	C	.	.	PASS	END=36552360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	36552361	.	C	.	.	PASS	END=36552499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	36552500	.	C	.	.	PASS	END=36552541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	36552542	.	C	.	.	PASS	END=36552641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	36552642	.	C	.	.	PASS	END=36552683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	36552684	.	T	.	.	PASS	END=36552697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	36552754	.	C	.	.	PASS	END=36552766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	36552767	.	G	.	.	PASS	END=36552910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	36552911	.	A	.	.	PASS	END=36552917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	36552918	.	C	.	.	PASS	END=36552950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	36552951	.	T	.	.	PASS	END=36552963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	36552989	.	G	.	.	PASS	END=36553029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	36553030	.	T	.	.	PASS	END=36553080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	36553081	.	C	.	.	PASS	END=36553124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	36553125	.	C	.	.	PASS	END=36553211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	36553212	.	C	.	.	PASS	END=36553234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	36553278	.	A	.	.	PASS	END=36553306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	36553307	.	C	.	.	PASS	END=36553342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	36553343	.	C	.	.	PASS	END=36553391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	36553392	.	A	.	.	PASS	END=36553459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	36553523	.	C	.	.	PASS	END=36553580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	36553581	.	C	.	.	PASS	END=36553609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	36553610	.	G	.	.	PASS	END=36553667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	36553668	.	G	.	.	PASS	END=36553672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:277:99:60
chr1	36553673	.	A	G	8036.63	PASS	DP=283;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=16.1499;MQ=60;MQ0=0;QD=28.40;SB=-4886.67	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,283:283:99:8037,602,0:60:99:1.000
chr1	36553674	.	C	.	.	PASS	END=36553730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	36553731	.	C	.	.	PASS	END=36553742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	36553743	.	A	.	.	PASS	END=36553759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	36553760	.	C	.	.	PASS	END=36553788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	36553789	.	C	.	.	PASS	END=36553805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	36553806	.	G	.	.	PASS	END=36553811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	36553812	.	C	.	.	PASS	END=36553821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr1	36553822	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:69:60
chr1	36553823	.	G	.	.	PASS	END=36553824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	36553825	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:69:60
chr1	36553826	.	C	.	.	PASS	END=36553838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	36554433	.	C	.	.	LowGQX	END=36554477	GT	./.
chr1	36554478	.	C	.	.	LowGQX	END=36554496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36554497	.	T	A	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	36554498	.	G	.	.	LowGQX	END=36554536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36554537	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	36554538	.	T	.	.	LowGQX	END=36554627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36554628	.	G	.	.	LowGQX	END=36554782	GT	./.
chr1	36556843	.	A	.	.	LowGQX	END=36556943	GT	./.
chr1	36557217	.	A	.	.	LowGQX	END=36557405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36557406	.	A	.	.	LowGQX	END=36557428	GT	./.
chr1	36557509	.	A	.	.	LowGQX	END=36557518	GT	./.
chr1	36557519	.	G	.	.	LowGQX	END=36557557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36557558	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	36557559	.	A	.	.	LowGQX	END=36557697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36558021	.	A	.	.	LowGQX	END=36558125	GT	./.
chr1	36558696	.	A	.	.	LowGQX	END=36558989	GT	./.
chr1	36563119	.	G	.	.	PASS	END=36563123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	36563124	.	A	.	.	PASS	END=36563140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	36563141	.	G	.	.	PASS	END=36563150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	36563151	.	G	.	.	PASS	END=36563157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	36563158	.	C	A	1138.87	SB	DP=36;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;QD=31.64;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,36:36:93.29:1172,93,0:60:93:1.000
chr1	36563159	.	C	.	.	PASS	END=36563161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr1	36563162	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:66:60
chr1	36563163	.	C	.	.	PASS	END=36563171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	36563172	.	A	.	.	PASS	END=36563205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	36563206	.	G	.	.	PASS	END=36563213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	36563214	.	A	.	.	PASS	END=36563221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	36563222	.	G	.	.	PASS	END=36563241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	36563242	.	G	.	.	PASS	END=36563283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	36563284	.	C	.	.	PASS	END=36563323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	36563324	.	T	.	.	PASS	END=36563368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:336:99:60
chr1	36563369	.	T	.	.	PASS	END=36563491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:406:99:60
chr1	36563492	.	G	.	.	PASS	END=36563538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:307:99:60
chr1	36563539	.	G	.	.	PASS	END=36563564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr1	36563565	.	C	.	.	PASS	END=36563595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	36563596	.	T	.	.	PASS	END=36563624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	36563625	.	C	.	.	PASS	END=36563634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	36563635	.	G	.	.	PASS	END=36563697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	36563698	.	T	.	.	PASS	END=36563784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	36563785	.	T	.	.	PASS	END=36563822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	36563823	.	C	.	.	PASS	END=36563874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	36563875	.	A	.	.	PASS	END=36563971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	36563972	.	C	.	.	PASS	END=36564007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	36564008	.	G	.	.	PASS	END=36564147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	36564148	.	C	.	.	PASS	END=36564189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	36564190	.	C	.	.	PASS	END=36564231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	36564232	.	C	.	.	PASS	END=36564289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	36564290	.	C	.	.	PASS	END=36564423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	36564424	.	T	.	.	PASS	END=36564456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	36564457	.	A	.	.	PASS	END=36564506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:87:60
chr1	36564507	.	C	.	.	PASS	END=36564523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	36564524	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:69:60
chr1	36564525	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:96:60
chr1	36564526	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:39:29:60
chr1	36564527	.	C	.	.	PASS	END=36564529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	36564530	.	T	.	.	PASS	END=36564531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:57:60
chr1	36564532	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:81:60
chr1	36564533	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:51:60
chr1	36564534	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:81:60
chr1	36564535	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:51:60
chr1	36564536	.	C	.	.	PASS	END=36564537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	36564538	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:39:60
chr1	36564539	.	G	.	.	PASS	END=36564544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	36564545	.	C	.	.	PASS	END=36564546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	36564547	.	A	.	.	PASS	END=36564549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr1	36564550	.	A	.	.	PASS	END=36564554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	36564555	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:30:60
chr1	36564556	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:57:60
chr1	36564557	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:36:60
chr1	36564558	.	C	.	.	PASS	END=36564559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	36564560	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:51:60
chr1	36564561	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chr1	36564562	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:2:60
chr1	36564563	.	C	.	.	PASS	END=36564564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	36564565	.	A	.	28.54	LowGQX	DP=24;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:19:24:2.34:60:2
chr1	36564566	.	G	.	.	PASS	END=36564567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	36564568	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:24:60
chr1	36564569	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:33:60
chr1	36564570	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:0:60
chr1	36564571	.	G	.	.	PASS	END=36564573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	36564574	.	T	.	.	PASS	END=36564575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chr1	36564576	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:24:60
chr1	36564577	.	G	.	.	PASS	END=36564579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	36564580	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:36:60
chr1	36564581	.	G	.	.	PASS	END=36564582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	36564583	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:24:60
chr1	36564584	.	G	.	.	PASS	END=36564585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	36564586	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:27:60
chr1	36564587	.	C	.	.	PASS	END=36564588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	36564589	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:36:60
chr1	36564590	.	G	.	.	PASS	END=36564592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	36564593	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:36:60
chr1	36564594	.	G	.	.	PASS	END=36564605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	36564606	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:21:60
chr1	36564607	.	G	.	.	PASS	END=36564619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	36564620	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr1	36564621	.	G	.	.	PASS	END=36564624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	36564625	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	36564626	.	G	.	.	PASS	END=36564636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	36564637	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:18:60
chr1	36564638	.	A	.	.	PASS	END=36564646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	36564647	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:30:60
chr1	36564648	.	G	.	.	PASS	END=36564652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	36564653	.	A	.	.	PASS	END=36564660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	36564661	.	A	.	.	LowGQX	END=36564662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr1	36564663	.	C	.	.	PASS	END=36564665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	36564666	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	36564667	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	36564668	.	T	.	.	LowGQX	END=36564671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	36564672	.	G	.	.	PASS	END=36564673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	36564674	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	36564675	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	36564676	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	36564677	.	C	.	.	PASS	END=36564678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	36564679	.	A	.	.	LowGQX	END=36564680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:60
chr1	36564681	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:39:60
chr1	36564682	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	36564683	.	C	.	.	PASS	END=36564685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	36564686	.	G	.	.	PASS	END=36564697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	36564698	.	T	.	.	PASS	END=36564703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	36564704	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	36564705	.	G	.	.	PASS	END=36564711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	36564712	.	T	.	.	PASS	END=36564713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	36564714	.	G	.	.	PASS	END=36564718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	36564719	.	C	.	.	PASS	END=36564721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	36564722	.	T	.	.	PASS	END=36564735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	36564736	.	C	.	.	PASS	END=36564742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	36564743	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	36564744	.	C	.	.	PASS	END=36564747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	36564748	.	T	.	.	PASS	END=36564749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	36564750	.	G	.	.	PASS	END=36564753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	36564754	.	A	.	.	PASS	END=36564756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	36564757	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	36564758	.	G	.	.	PASS	END=36564759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	36564760	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	36564761	.	T	.	.	PASS	END=36564767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	36564768	.	G	.	.	PASS	END=36564772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	36564773	.	G	.	.	PASS	END=36564778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	36564779	.	C	.	.	PASS	END=36564787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	36564788	.	C	.	.	PASS	END=36564793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	36564794	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:33:60
chr1	36564795	.	G	.	.	PASS	END=36564803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr1	36564804	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:51:60
chr1	36564805	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:36:60
chr1	36564806	.	C	.	.	PASS	END=36564807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	36564808	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:36:60
chr1	36564809	.	G	.	.	PASS	END=36564813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	36564814	.	T	.	69.10	PASS	DP=24;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:19:24:39.11:60:39
chr1	36564815	.	C	.	.	PASS	END=36564820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	36564821	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chr1	36564822	.	G	.	.	PASS	END=36564826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	36564827	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:39:60
chr1	36564828	.	G	.	.	PASS	END=36564829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	36564830	.	T	.	.	PASS	END=36564831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr1	36564832	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:23:60
chr1	36564833	.	C	.	.	PASS	END=36564834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	36564835	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:42:60
chr1	36564836	.	C	.	.	PASS	END=36564841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:60
chr1	36564842	.	C	.	.	PASS	END=36564847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	36564848	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:45:60
chr1	36564849	.	C	.	.	PASS	END=36564855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	36564856	.	A	.	.	PASS	END=36564859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	36564860	.	C	.	.	PASS	END=36564873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	36564874	.	T	.	.	PASS	END=36564875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr1	36564876	.	G	.	.	PASS	END=36564880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	36564881	.	A	.	.	PASS	END=36564886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	36564887	.	C	.	.	PASS	END=36564892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	36564893	.	A	.	.	PASS	END=36564903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	36564904	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:42:60
chr1	36564905	.	C	.	.	PASS	END=36564906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	36564907	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:42:60
chr1	36564908	.	G	.	.	PASS	END=36564916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	36564917	.	A	.	.	PASS	END=36564918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:42:60
chr1	36564919	.	C	.	.	PASS	END=36564926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	36564927	.	A	.	.	PASS	END=36564928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr1	36564929	.	C	.	.	PASS	END=36564930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	36564931	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:39:60
chr1	36564932	.	G	.	.	PASS	END=36564939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	36564940	.	A	.	.	PASS	END=36564948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	36564949	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:33:60
chr1	36564950	.	G	.	.	PASS	END=36564957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	36564958	.	A	.	.	PASS	END=36564959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr1	36564960	.	G	.	.	PASS	END=36564961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	36564962	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:33:60
chr1	36564963	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:54:60
chr1	36564964	.	T	.	.	PASS	END=36564970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	36564971	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	36564972	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:60
chr1	36564973	.	T	.	.	PASS	END=36564976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	36564977	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:27:60
chr1	36564978	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:33:60
chr1	36564979	.	G	.	.	PASS	END=36564980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	36564981	.	C	.	.	PASS	END=36564984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chr1	36564985	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:18:60
chr1	36564986	.	T	.	.	PASS	END=36564988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	36564989	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:42:60
chr1	36564990	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	36564991	.	T	.	.	PASS	END=36564993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	36564994	.	G	.	.	LowGQX	END=36564996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:60
chr1	36564997	.	G	.	.	PASS	END=36564998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	36564999	.	C	.	.	LowGQX	END=36565000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	36565001	.	G	.	.	PASS	END=36565007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	36565008	.	C	.	.	LowGQX	END=36565009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:60
chr1	36565010	.	G	.	.	PASS	END=36565013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	36565014	.	G	.	.	LowGQX	END=36565015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:15:60
chr1	36565016	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	36565017	.	C	.	.	PASS	END=36565018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	36565019	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	36565020	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	36565021	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:15:60
chr1	36565022	.	G	.	.	LowGQX	END=36565023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	36565024	.	C	.	.	PASS	END=36565030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	36565031	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	36565032	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:15:60
chr1	36565033	.	C	.	.	PASS	END=36565034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	36565035	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	36565036	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:18:60
chr1	36565037	.	G	.	.	PASS	END=36565048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	36565049	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	36565050	.	C	.	.	PASS	END=36565057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	36565058	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	36565059	.	G	.	.	PASS	END=36565060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	36565061	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	36565062	.	C	.	.	PASS	END=36565063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	36565064	.	A	.	.	LowGQX	END=36565065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	36565066	.	C	.	.	PASS	END=36565072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	36565073	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	36565074	.	G	.	.	PASS	END=36565082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	36565083	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	36565084	.	C	.	.	PASS	END=36565086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	36565087	.	T	.	.	LowGQX	END=36565088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	36565089	.	C	.	.	PASS	END=36565092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	36565093	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	36565094	.	A	.	.	PASS	END=36565095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	36565096	.	A	.	.	LowGQX	END=36565097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	36565098	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	36565099	.	A	.	.	LowGQX	END=36565101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	36565102	.	A	.	.	PASS	END=36565105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	36565106	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr1	36565107	.	G	.	.	PASS	END=36565111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	36565112	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	36565113	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	36565114	.	T	.	42.02	LowGQX	DP=11;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:11:12.03:60:12
chr1	36565115	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	36565116	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	36565117	.	G	.	.	PASS	END=36565121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	36565122	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:1:60
chr1	36565123	.	T	.	.	LowGQX	END=36565124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	36565125	.	A	.	.	PASS	END=36565127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	36565128	.	T	.	.	LowGQX	END=36565130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	36565131	.	G	.	.	LowGQX	END=36565139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	36565600	.	A	.	.	PASS	END=36565616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	36565617	.	G	A	1282.19	PASS	DP=46;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.7877;MQ=60;MQ0=0;QD=27.87;SB=-253.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,46:46:99:1315,102,0:60:99:1.000
chr1	36565618	.	A	.	.	PASS	END=36565627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	36565628	.	C	.	.	PASS	END=36565643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	36565644	.	C	.	.	PASS	END=36565654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	36565655	.	G	.	.	PASS	END=36565691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	36565692	.	G	.	.	PASS	END=36565804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	36565805	.	C	.	.	PASS	END=36565842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	36565843	.	T	.	.	PASS	END=36565861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	36565862	.	G	.	.	PASS	END=36565894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	36602802	.	G	.	.	LowGQX	END=36602925	GT	./.
chr1	36603395	.	A	.	.	LowGQX	END=36603581	GT	./.
chr1	36603716	.	C	.	.	LowGQX	END=36603751	GT	./.
chr1	36603752	.	C	.	.	LowGQX	END=36603833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36605319	.	A	.	.	LowGQX	END=36605422	GT	./.
chr1	36605618	.	C	.	.	LowGQX	END=36605769	GT	./.
chr1	36614909	.	G	.	.	LowGQX	END=36615008	GT	./.
chr1	36621932	.	G	.	.	LowGQX	END=36621997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36621998	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36621999	.	C	.	.	LowGQX	END=36622024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36622025	.	A	.	.	LowGQX	END=36622091	GT	./.
chr1	36636570	.	A	.	.	LowGQX	END=36636689	GT	./.
chr1	36636690	.	G	.	.	LowGQX	END=36636762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36636763	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	36636764	.	C	.	.	LowGQX	END=36636809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	36636810	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	36636811	.	C	.	.	LowGQX	END=36636833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	36636834	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	36636835	.	C	.	.	LowGQX	END=36636910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36636911	.	A	.	.	LowGQX	.	GT	./.
chr1	36636912	.	G	.	.	LowGQX	END=36636913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36636914	.	A	.	.	LowGQX	END=36636918	GT	./.
chr1	36637099	.	G	.	.	LowGQX	END=36637198	GT	./.
chr1	36638063	.	A	.	.	LowGQX	END=36638230	GT	./.
chr1	36638963	.	A	.	.	LowGQX	END=36639006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36639007	.	T	.	.	LowGQX	.	GT	./.
chr1	36639008	.	G	.	.	LowGQX	END=36639033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36639034	.	T	.	.	LowGQX	.	GT	./.
chr1	36639035	.	C	.	.	LowGQX	END=36639041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36639042	.	A	.	.	LowGQX	END=36639081	GT	./.
chr1	36640497	.	A	.	.	LowGQX	END=36640611	GT	./.
chr1	36641728	.	T	.	.	LowGQX	END=36642132	GT	./.
chr1	36642133	.	A	.	.	LowGQX	END=36642156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36642157	.	T	.	.	LowGQX	.	GT	./.
chr1	36642158	.	G	.	.	LowGQX	END=36642191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36642192	.	T	.	.	LowGQX	.	GT	./.
chr1	36642193	.	C	.	.	LowGQX	END=36642194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36642195	.	A	.	.	LowGQX	.	GT	./.
chr1	36642196	.	C	.	.	LowGQX	END=36642222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36642223	.	A	.	.	LowGQX	.	GT	./.
chr1	36642224	.	C	.	.	LowGQX	END=36642228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36642229	.	A	.	.	LowGQX	.	GT	./.
chr1	36642230	.	G	.	.	LowGQX	END=36642247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36642296	.	A	.	.	LowGQX	END=36642298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36642299	.	T	.	.	LowGQX	.	GT	./.
chr1	36642300	.	G	.	.	LowGQX	END=36642320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36642321	.	C	.	.	LowGQX	.	GT	./.
chr1	36642322	.	A	.	.	LowGQX	END=36642350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36642351	.	T	.	.	LowGQX	.	GT	./.
chr1	36642352	.	G	.	.	LowGQX	END=36642379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36642380	.	A	.	.	LowGQX	END=36642445	GT	./.
chr1	36643117	.	T	.	.	LowGQX	END=36643216	GT	./.
chr1	36643472	.	A	.	.	LowGQX	END=36643518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	36643519	.	C	.	.	LowGQX	END=36643594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36643595	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36643596	.	C	.	.	LowGQX	END=36643653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36643654	.	C	.	.	LowGQX	END=36643681	GT	./.
chr1	36643682	.	A	.	.	LowGQX	END=36643691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36643692	.	C	.	.	LowGQX	.	GT	./.
chr1	36643693	.	C	.	.	LowGQX	END=36643729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36643730	.	G	.	.	LowGQX	.	GT	./.
chr1	36643731	.	C	.	.	LowGQX	END=36643759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36643760	.	G	.	.	LowGQX	.	GT	./.
chr1	36643761	.	C	.	.	LowGQX	END=36643804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644018	.	A	.	.	LowGQX	END=36644032	GT	./.
chr1	36644033	.	G	.	.	LowGQX	END=36644053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36644054	.	T	.	.	LowGQX	.	GT	./.
chr1	36644055	.	C	.	.	LowGQX	END=36644108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36644109	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36644110	.	C	.	.	LowGQX	END=36644176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36644177	.	G	.	.	LowGQX	.	GT	./.
chr1	36644178	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644179	.	T	.	.	LowGQX	END=36644180	GT	./.
chr1	36644181	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644182	.	A	.	.	LowGQX	.	GT	./.
chr1	36644183	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644184	.	G	.	.	LowGQX	END=36644187	GT	./.
chr1	36644188	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644189	.	A	.	.	LowGQX	.	GT	./.
chr1	36644190	.	A	.	.	LowGQX	END=36644191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644192	.	G	.	.	LowGQX	END=36644194	GT	./.
chr1	36644195	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644196	.	A	.	.	LowGQX	.	GT	./.
chr1	36644197	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644198	.	G	.	.	LowGQX	END=36644199	GT	./.
chr1	36644284	.	A	.	.	LowGQX	END=36644326	GT	./.
chr1	36644327	.	G	.	.	LowGQX	END=36644328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644329	.	G	.	.	LowGQX	.	GT	./.
chr1	36644330	.	C	.	.	LowGQX	END=36644338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644339	.	A	.	.	LowGQX	.	GT	./.
chr1	36644340	.	G	.	.	LowGQX	END=36644341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644342	.	C	.	.	LowGQX	.	GT	./.
chr1	36644343	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644344	.	G	.	.	LowGQX	END=36644347	GT	./.
chr1	36644348	.	C	.	.	LowGQX	END=36644349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644350	.	C	.	.	LowGQX	.	GT	./.
chr1	36644351	.	G	.	.	LowGQX	END=36644352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644353	.	A	.	.	LowGQX	.	GT	./.
chr1	36644354	.	G	.	.	LowGQX	END=36644356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644357	.	G	.	.	LowGQX	.	GT	./.
chr1	36644358	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644359	.	G	.	.	LowGQX	.	GT	./.
chr1	36644360	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644361	.	G	.	.	LowGQX	.	GT	./.
chr1	36644362	.	G	.	.	LowGQX	END=36644363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644364	.	G	.	.	LowGQX	.	GT	./.
chr1	36644365	.	C	.	.	LowGQX	END=36644367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644368	.	G	.	.	LowGQX	END=36644369	GT	./.
chr1	36644370	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644371	.	G	.	.	LowGQX	.	GT	./.
chr1	36644372	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644373	.	A	.	.	LowGQX	.	GT	./.
chr1	36644374	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644375	.	G	.	.	LowGQX	END=36644376	GT	./.
chr1	36644377	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644378	.	A	.	.	LowGQX	END=36644383	GT	./.
chr1	36644384	.	C	.	.	LowGQX	END=36644386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644387	.	A	.	.	LowGQX	END=36644389	GT	./.
chr1	36644390	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644391	.	C	.	.	LowGQX	.	GT	./.
chr1	36644392	.	G	.	.	LowGQX	END=36644394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644395	.	C	.	.	LowGQX	.	GT	./.
chr1	36644396	.	A	.	.	LowGQX	END=36644398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644399	.	A	.	.	LowGQX	END=36644401	GT	./.
chr1	36644402	.	A	.	.	LowGQX	END=36644404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644405	.	A	.	.	LowGQX	END=36644406	GT	./.
chr1	36644407	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644408	.	A	.	.	LowGQX	.	GT	./.
chr1	36644409	.	G	.	.	LowGQX	END=36644410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644411	.	G	.	.	LowGQX	.	GT	./.
chr1	36644412	.	G	.	.	LowGQX	END=36644413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644414	.	T	.	.	LowGQX	.	GT	./.
chr1	36644415	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644416	.	C	.	.	LowGQX	.	GT	./.
chr1	36644417	.	A	.	.	LowGQX	END=36644419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644420	.	A	.	.	LowGQX	END=36644421	GT	./.
chr1	36644422	.	C	.	.	LowGQX	END=36644425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644426	.	T	.	.	LowGQX	.	GT	./.
chr1	36644427	.	G	.	.	LowGQX	END=36644438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644439	.	C	.	.	LowGQX	.	GT	./.
chr1	36644440	.	G	.	.	LowGQX	END=36644449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644450	.	T	.	.	LowGQX	.	GT	./.
chr1	36644451	.	G	.	.	LowGQX	END=36644455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644469	.	C	.	.	LowGQX	END=36644476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36644477	.	G	.	.	LowGQX	END=36644628	GT	./.
chr1	36644840	.	A	.	.	LowGQX	END=36644939	GT	./.
chr1	36645086	.	G	.	.	LowGQX	END=36645092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36645093	.	A	.	.	LowGQX	.	GT	./.
chr1	36645094	.	C	.	.	LowGQX	END=36645099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36645100	.	T	.	.	LowGQX	.	GT	./.
chr1	36645101	.	T	.	.	LowGQX	END=36645108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36645109	.	A	.	.	LowGQX	.	GT	./.
chr1	36645110	.	A	.	.	LowGQX	END=36645115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36645116	.	A	.	.	LowGQX	.	GT	./.
chr1	36645117	.	A	.	.	LowGQX	END=36645122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36645123	.	A	.	.	LowGQX	.	GT	./.
chr1	36645124	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36645125	.	A	.	.	LowGQX	.	GT	./.
chr1	36645126	.	G	.	.	LowGQX	END=36645133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36645134	.	G	.	.	LowGQX	.	GT	./.
chr1	36645135	.	C	.	.	LowGQX	END=36645136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36645137	.	A	.	.	LowGQX	.	GT	./.
chr1	36645138	.	A	.	.	LowGQX	END=36645139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36645140	.	G	.	.	LowGQX	END=36645141	GT	./.
chr1	36645142	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36645143	.	A	.	.	LowGQX	.	GT	./.
chr1	36645144	.	A	.	.	LowGQX	END=36645147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36645148	.	T	.	.	LowGQX	END=36645149	GT	./.
chr1	36645150	.	C	.	.	LowGQX	END=36645151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36645152	.	A	.	.	LowGQX	.	GT	./.
chr1	36645153	.	G	.	.	LowGQX	END=36645154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36645155	.	C	.	.	LowGQX	.	GT	./.
chr1	36645156	.	C	.	.	LowGQX	END=36645159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36645160	.	T	.	.	LowGQX	.	GT	./.
chr1	36645161	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36645162	.	A	.	.	LowGQX	END=36645163	GT	./.
chr1	36645164	.	G	.	.	LowGQX	END=36645170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36645171	.	T	.	.	LowGQX	.	GT	./.
chr1	36645172	.	T	.	.	LowGQX	END=36645181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36645182	.	T	.	.	LowGQX	.	GT	./.
chr1	36645183	.	C	.	.	LowGQX	END=36645185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36645263	.	A	.	.	LowGQX	END=36645266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36645267	.	A	.	.	LowGQX	END=36645414	GT	./.
chr1	36645473	.	A	.	.	LowGQX	END=36645556	GT	./.
chr1	36645557	.	A	.	.	LowGQX	END=36645585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36645586	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36645587	.	C	.	.	LowGQX	END=36645640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36645641	.	G	.	.	LowGQX	.	GT	./.
chr1	36645642	.	C	.	.	LowGQX	END=36645647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36645648	.	T	.	.	LowGQX	.	GT	./.
chr1	36645649	.	G	.	.	LowGQX	END=36645668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36645669	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36645670	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36645805	.	G	.	.	LowGQX	END=36645904	GT	./.
chr1	36748163	.	A	.	.	LowGQX	END=36748303	GT	./.
chr1	36751967	.	A	.	.	LowGQX	END=36752118	GT	./.
chr1	36752119	.	G	.	.	LowGQX	END=36752151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36752152	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	36752153	.	C	.	.	LowGQX	END=36752202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36752203	.	T	.	.	LowGQX	.	GT	./.
chr1	36752204	.	T	.	.	LowGQX	END=36752218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36752219	.	C	.	.	LowGQX	.	GT	./.
chr1	36752220	.	C	.	.	LowGQX	END=36752288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36752289	.	G	.	.	LowGQX	.	GT	./.
chr1	36752290	.	G	.	.	LowGQX	END=36752298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36752299	.	C	.	.	LowGQX	.	GT	./.
chr1	36752300	.	T	.	.	LowGQX	END=36752303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36752304	.	C	.	.	LowGQX	.	GT	./.
chr1	36752305	.	A	.	.	LowGQX	END=36752332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36752333	.	C	.	.	LowGQX	END=36752873	GT	./.
chr1	36754659	.	A	.	.	LowGQX	END=36754758	GT	./.
chr1	36754759	.	A	.	.	LowGQX	END=36754765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36754766	.	C	.	.	LowGQX	.	GT	./.
chr1	36754767	.	T	.	.	LowGQX	END=36754777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36754778	.	A	.	.	LowGQX	.	GT	./.
chr1	36754779	.	A	.	.	LowGQX	END=36754786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36754787	.	A	.	.	LowGQX	.	GT	./.
chr1	36754788	.	T	.	.	LowGQX	END=36754814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36754815	.	T	.	.	LowGQX	.	GT	./.
chr1	36754816	.	C	.	.	LowGQX	END=36754821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36754822	.	A	.	.	LowGQX	END=36754823	GT	./.
chr1	36754824	.	C	.	.	LowGQX	END=36754826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36754827	.	T	.	.	LowGQX	.	GT	./.
chr1	36754828	.	T	.	.	LowGQX	END=36754838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36754839	.	C	.	.	LowGQX	.	GT	./.
chr1	36754840	.	A	.	.	LowGQX	END=36754853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36754854	.	T	.	.	LowGQX	END=36754855	GT	./.
chr1	36754856	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36754857	.	A	.	.	LowGQX	.	GT	./.
chr1	36754858	.	A	.	.	LowGQX	END=36754862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36754863	.	C	.	.	LowGQX	.	GT	./.
chr1	36754864	.	G	.	.	LowGQX	END=36754869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36754870	.	A	.	.	LowGQX	.	GT	./.
chr1	36754871	.	C	.	.	LowGQX	END=36754874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36754875	.	G	.	.	LowGQX	.	GT	./.
chr1	36754876	.	A	.	.	LowGQX	END=36754877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36754878	.	A	.	.	LowGQX	.	GT	./.
chr1	36754879	.	A	.	.	LowGQX	END=36754881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36754882	.	A	.	.	LowGQX	END=36754883	GT	./.
chr1	36754884	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36754885	.	T	.	.	LowGQX	.	GT	./.
chr1	36754886	.	G	.	.	LowGQX	END=36754891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36754892	.	C	.	.	LowGQX	.	GT	./.
chr1	36754893	.	T	.	.	LowGQX	END=36754896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36754897	.	A	.	.	LowGQX	END=36754899	GT	./.
chr1	36754900	.	A	.	.	LowGQX	END=36754906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36754907	.	G	.	.	LowGQX	.	GT	./.
chr1	36754908	.	A	.	.	LowGQX	END=36754909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36754910	.	G	.	.	LowGQX	END=36755091	GT	./.
chr1	36755092	.	A	.	.	LowGQX	END=36755094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36755095	.	A	.	.	LowGQX	.	GT	./.
chr1	36755096	.	G	.	.	LowGQX	END=36755106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36755107	.	C	.	.	LowGQX	END=36755108	GT	./.
chr1	36755109	.	G	.	.	LowGQX	END=36755116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36755117	.	C	.	.	LowGQX	.	GT	./.
chr1	36755118	.	A	.	.	LowGQX	END=36755127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36755128	.	A	.	.	LowGQX	END=36755129	GT	./.
chr1	36755130	.	C	.	.	LowGQX	END=36755132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36755133	.	G	.	.	LowGQX	.	GT	./.
chr1	36755134	.	G	.	.	LowGQX	END=36755149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36755150	.	T	.	.	LowGQX	.	GT	./.
chr1	36755151	.	G	.	.	LowGQX	END=36755153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36755154	.	C	.	.	LowGQX	.	GT	./.
chr1	36755155	.	A	.	.	LowGQX	END=36755165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36755166	.	G	.	.	LowGQX	END=36755167	GT	./.
chr1	36755168	.	G	.	.	LowGQX	END=36755170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36755171	.	T	.	.	LowGQX	.	GT	./.
chr1	36755172	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36755173	.	A	.	.	LowGQX	.	GT	./.
chr1	36755174	.	G	.	.	LowGQX	END=36755232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36755233	.	C	.	.	LowGQX	.	GT	./.
chr1	36755234	.	A	.	.	LowGQX	END=36755241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36755242	.	C	.	.	LowGQX	END=36755367	GT	./.
chr1	36756973	.	A	.	.	LowGQX	END=36757061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36757062	.	C	.	.	LowGQX	.	GT	./.
chr1	36757063	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36757064	.	A	.	.	LowGQX	END=36757149	GT	./.
chr1	36758197	.	A	.	.	LowGQX	END=36758312	GT	./.
chr1	36759445	.	A	.	.	LowGQX	END=36759544	GT	./.
chr1	36762182	.	A	.	.	LowGQX	END=36762373	GT	./.
chr1	36766485	.	A	.	.	LowGQX	END=36766510	GT	./.
chr1	36766511	.	G	.	.	LowGQX	END=36766516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36766517	.	A	.	.	LowGQX	.	GT	./.
chr1	36766518	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36766519	.	C	.	.	LowGQX	END=36766520	GT	./.
chr1	36766521	.	T	.	.	LowGQX	END=36766536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36766537	.	A	.	.	LowGQX	.	GT	./.
chr1	36766538	.	G	.	.	LowGQX	END=36766546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36766547	.	C	.	.	LowGQX	.	GT	./.
chr1	36766548	.	T	.	.	LowGQX	END=36766551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36766552	.	A	.	.	LowGQX	.	GT	./.
chr1	36766553	.	C	.	.	LowGQX	END=36766566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36766567	.	A	.	.	LowGQX	.	GT	./.
chr1	36766568	.	C	.	.	LowGQX	END=36766572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36766573	.	A	.	.	LowGQX	.	GT	./.
chr1	36766574	.	A	.	.	LowGQX	END=36766584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36766585	.	A	.	.	LowGQX	.	GT	./.
chr1	36766586	.	A	.	.	LowGQX	END=36766594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36766595	.	G	.	.	LowGQX	.	GT	./.
chr1	36766596	.	A	.	.	LowGQX	END=36766598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36766599	.	A	.	.	LowGQX	END=36766600	GT	./.
chr1	36766601	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36766602	.	A	.	.	LowGQX	.	GT	./.
chr1	36766603	.	C	.	.	LowGQX	END=36766611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36766612	.	A	.	.	LowGQX	END=36766613	GT	./.
chr1	36766614	.	A	.	.	LowGQX	END=36766621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36766622	.	A	.	.	LowGQX	.	GT	./.
chr1	36766623	.	C	.	.	LowGQX	END=36766628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36766629	.	A	.	.	LowGQX	.	GT	./.
chr1	36766630	.	C	.	.	LowGQX	END=36766631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36766632	.	A	.	.	LowGQX	.	GT	./.
chr1	36766633	.	A	.	.	LowGQX	END=36766636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36766637	.	C	.	.	LowGQX	.	GT	./.
chr1	36766638	.	T	.	.	LowGQX	END=36766678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36766679	.	A	.	.	LowGQX	END=36766680	GT	./.
chr1	36766681	.	C	.	.	LowGQX	END=36766687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36767102	.	T	.	.	LowGQX	END=36767299	GT	./.
chr1	36769365	.	C	.	.	LowGQX	END=36769620	GT	./.
chr1	36771974	.	T	.	.	LowGQX	END=36771983	GT	./.
chr1	36771984	.	G	.	.	LowGQX	END=36772018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772019	.	A	.	.	LowGQX	.	GT	./.
chr1	36772020	.	C	.	.	LowGQX	END=36772050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772051	.	C	.	.	LowGQX	END=36772052	GT	./.
chr1	36772053	.	C	.	.	LowGQX	END=36772060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772061	.	A	.	.	LowGQX	END=36772062	GT	./.
chr1	36772063	.	C	.	.	LowGQX	END=36772070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772071	.	A	.	.	LowGQX	.	GT	./.
chr1	36772072	.	T	.	.	LowGQX	END=36772073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772177	.	C	.	.	LowGQX	END=36772184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772185	.	T	.	.	LowGQX	.	GT	./.
chr1	36772186	.	C	.	.	LowGQX	END=36772187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772188	.	T	.	.	LowGQX	END=36772189	GT	./.
chr1	36772190	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772191	.	G	.	.	LowGQX	.	GT	./.
chr1	36772192	.	C	.	.	LowGQX	END=36772194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772195	.	G	.	.	LowGQX	.	GT	./.
chr1	36772196	.	C	.	.	LowGQX	END=36772200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772201	.	G	.	.	LowGQX	.	GT	./.
chr1	36772202	.	T	.	.	LowGQX	END=36772205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772206	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	36772207	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772208	.	T	.	.	LowGQX	.	GT	./.
chr1	36772209	.	C	.	.	LowGQX	END=36772212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772213	.	G	.	.	LowGQX	.	GT	./.
chr1	36772214	.	C	.	.	LowGQX	END=36772216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772217	.	G	.	.	LowGQX	.	GT	./.
chr1	36772218	.	A	.	.	LowGQX	END=36772236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772237	.	G	.	.	LowGQX	.	GT	./.
chr1	36772238	.	A	.	.	LowGQX	END=36772247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772248	.	T	.	.	LowGQX	.	GT	./.
chr1	36772249	.	C	.	.	LowGQX	END=36772257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772258	.	G	.	.	LowGQX	.	GT	./.
chr1	36772259	.	G	.	.	LowGQX	END=36772266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772267	.	G	.	.	LowGQX	END=36772268	GT	./.
chr1	36772269	.	C	.	.	LowGQX	END=36772276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772277	.	T	.	.	LowGQX	.	GT	./.
chr1	36772278	.	G	.	.	LowGQX	END=36772281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772282	.	T	.	.	LowGQX	.	GT	./.
chr1	36772283	.	G	.	.	LowGQX	END=36772314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772315	.	T	.	.	LowGQX	.	GT	./.
chr1	36772316	.	T	.	.	LowGQX	END=36772320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36772321	.	G	.	.	LowGQX	END=36772356	GT	./.
chr1	36772365	.	G	.	.	LowGQX	END=36772524	GT	./.
chr1	36772767	.	G	.	.	LowGQX	END=36772856	GT	./.
chr1	36772857	.	G	.	.	LowGQX	END=36772858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36772859	.	T	.	.	LowGQX	.	GT	./.
chr1	36772860	.	G	.	.	LowGQX	END=36772867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36772868	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36772869	.	G	.	.	LowGQX	END=36772886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36773113	.	C	.	.	LowGQX	END=36773162	GT	./.
chr1	36773163	.	G	.	.	LowGQX	END=36773167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773168	.	C	.	.	LowGQX	.	GT	./.
chr1	36773169	.	C	.	.	LowGQX	END=36773181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773182	.	T	.	.	LowGQX	.	GT	./.
chr1	36773183	.	G	.	.	LowGQX	END=36773187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773188	.	T	.	.	LowGQX	.	GT	./.
chr1	36773189	.	G	.	.	LowGQX	END=36773190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773191	.	T	.	.	LowGQX	.	GT	./.
chr1	36773192	.	G	.	.	LowGQX	END=36773197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773198	.	T	.	.	LowGQX	.	GT	./.
chr1	36773199	.	G	.	.	LowGQX	END=36773200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773201	.	G	.	.	LowGQX	.	GT	./.
chr1	36773202	.	C	.	.	LowGQX	END=36773212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773349	.	T	.	.	LowGQX	END=36773365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773366	.	A	.	.	LowGQX	.	GT	./.
chr1	36773367	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773368	.	T	.	.	LowGQX	.	GT	./.
chr1	36773369	.	A	.	.	LowGQX	END=36773370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773371	.	G	.	.	LowGQX	.	GT	./.
chr1	36773372	.	C	.	.	LowGQX	END=36773375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773376	.	G	.	.	LowGQX	.	GT	./.
chr1	36773377	.	G	.	.	LowGQX	END=36773383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773384	.	A	.	.	LowGQX	.	GT	./.
chr1	36773385	.	G	.	.	LowGQX	END=36773407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773408	.	T	.	.	LowGQX	.	GT	./.
chr1	36773409	.	C	.	.	LowGQX	END=36773412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773413	.	A	.	.	LowGQX	END=36773415	GT	./.
chr1	36773416	.	G	.	.	LowGQX	END=36773423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773424	.	A	.	.	LowGQX	END=36773426	GT	./.
chr1	36773427	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773428	.	T	.	.	LowGQX	.	GT	./.
chr1	36773429	.	A	.	.	LowGQX	END=36773431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773432	.	T	.	.	LowGQX	.	GT	./.
chr1	36773433	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773434	.	G	.	.	LowGQX	.	GT	./.
chr1	36773435	.	G	.	.	LowGQX	END=36773436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773437	.	T	.	.	LowGQX	.	GT	./.
chr1	36773438	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773439	.	A	.	.	LowGQX	END=36773441	GT	./.
chr1	36773442	.	G	.	.	LowGQX	END=36773443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773444	.	A	.	.	LowGQX	END=36773445	GT	./.
chr1	36773446	.	G	.	.	LowGQX	END=36773448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773492	.	G	.	.	LowGQX	END=36773496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773497	.	T	.	.	LowGQX	END=36773498	GT	./.
chr1	36773499	.	C	.	.	LowGQX	END=36773500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773501	.	T	.	.	LowGQX	.	GT	./.
chr1	36773502	.	G	.	.	LowGQX	END=36773504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773505	.	C	.	.	LowGQX	.	GT	./.
chr1	36773506	.	C	.	.	LowGQX	END=36773507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773508	.	T	.	.	LowGQX	.	GT	./.
chr1	36773509	.	C	.	.	LowGQX	END=36773518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773519	.	C	.	.	LowGQX	.	GT	./.
chr1	36773520	.	T	.	.	LowGQX	END=36773549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773550	.	A	.	.	LowGQX	END=36773591	GT	./.
chr1	36773709	.	G	.	.	LowGQX	END=36773810	GT	./.
chr1	36773983	.	T	.	.	LowGQX	END=36773998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36773999	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36774000	.	A	.	.	LowGQX	END=36774008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36774009	.	G	.	.	LowGQX	.	GT	./.
chr1	36774010	.	G	.	.	LowGQX	END=36774023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36774024	.	G	.	.	LowGQX	.	GT	./.
chr1	36774025	.	T	.	.	LowGQX	END=36774029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36774030	.	G	.	.	LowGQX	.	GT	./.
chr1	36774031	.	A	.	.	LowGQX	END=36774032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36774033	.	G	.	.	LowGQX	.	GT	./.
chr1	36774034	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36774035	.	A	.	.	LowGQX	END=36774036	GT	./.
chr1	36774037	.	A	.	.	LowGQX	END=36774042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36774043	.	T	.	.	LowGQX	.	GT	./.
chr1	36774044	.	T	.	.	LowGQX	END=36774047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36774048	.	C	.	.	LowGQX	.	GT	./.
chr1	36774049	.	A	.	.	LowGQX	END=36774050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36774051	.	A	.	.	LowGQX	END=36774052	GT	./.
chr1	36774053	.	A	.	.	LowGQX	END=36774057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36774058	.	T	.	.	LowGQX	.	GT	./.
chr1	36774059	.	G	.	.	LowGQX	END=36774065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36774066	.	C	.	.	LowGQX	END=36774068	GT	./.
chr1	36774069	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36774070	.	A	.	.	LowGQX	.	GT	./.
chr1	36774071	.	C	.	.	LowGQX	END=36774082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36775120	.	T	.	.	LowGQX	END=36775219	GT	./.
chr1	36784669	.	C	.	.	LowGQX	END=36784768	GT	./.
chr1	36784837	.	G	.	.	LowGQX	END=36784854	GT	./.
chr1	36784855	.	T	.	.	LowGQX	END=36784936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36785040	.	T	.	.	LowGQX	END=36785044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36785045	.	C	.	.	LowGQX	END=36785139	GT	./.
chr1	36785275	.	G	.	.	LowGQX	END=36785323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36785324	.	C	.	.	LowGQX	.	GT	./.
chr1	36785325	.	C	.	.	LowGQX	END=36785328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36785329	.	G	.	.	LowGQX	.	GT	./.
chr1	36785330	.	C	.	.	LowGQX	END=36785348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36785349	.	C	.	.	LowGQX	.	GT	./.
chr1	36785350	.	A	.	.	LowGQX	END=36785356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36785357	.	C	.	.	LowGQX	END=36786049	GT	./.
chr1	36786050	.	G	.	.	LowGQX	END=36786060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786061	.	C	.	.	LowGQX	.	GT	./.
chr1	36786062	.	C	.	.	LowGQX	END=36786063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786064	.	T	.	.	LowGQX	END=36786065	GT	./.
chr1	36786066	.	A	.	.	LowGQX	END=36786072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786073	.	G	.	.	LowGQX	.	GT	./.
chr1	36786074	.	G	.	.	LowGQX	END=36786075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786076	.	G	.	.	LowGQX	.	GT	./.
chr1	36786077	.	C	.	.	LowGQX	END=36786084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786085	.	C	.	.	LowGQX	.	GT	./.
chr1	36786086	.	G	.	.	LowGQX	END=36786092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786093	.	G	.	.	LowGQX	.	GT	./.
chr1	36786094	.	G	.	.	LowGQX	END=36786098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786099	.	T	.	.	LowGQX	.	GT	./.
chr1	36786100	.	G	.	.	LowGQX	END=36786101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786102	.	G	.	.	LowGQX	.	GT	./.
chr1	36786103	.	A	.	.	LowGQX	END=36786110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786111	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36786112	.	G	.	.	LowGQX	END=36786118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36786119	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36786120	.	A	.	.	LowGQX	END=36786121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36786122	.	G	.	.	LowGQX	.	GT	./.
chr1	36786123	.	A	.	.	LowGQX	END=36786125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36786126	.	G	.	.	LowGQX	END=36786127	GT	./.
chr1	36786128	.	G	.	.	LowGQX	END=36786131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36786132	.	C	.	.	LowGQX	.	GT	./.
chr1	36786133	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36786134	.	T	.	.	LowGQX	.	GT	./.
chr1	36786135	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36786136	.	C	.	.	LowGQX	.	GT	./.
chr1	36786137	.	A	.	.	LowGQX	END=36786138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36786139	.	A	.	.	LowGQX	.	GT	./.
chr1	36786140	.	G	.	.	LowGQX	END=36786145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36786146	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36786147	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36786148	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36786149	.	A	.	.	LowGQX	.	GT	./.
chr1	36786150	.	C	.	.	LowGQX	END=36786152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36786153	.	T	.	.	LowGQX	END=36786154	GT	./.
chr1	36786155	.	A	.	.	LowGQX	END=36786159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36786160	.	G	.	.	LowGQX	.	GT	./.
chr1	36786161	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786162	.	A	.	.	LowGQX	END=36786166	GT	./.
chr1	36786167	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786168	.	C	.	.	LowGQX	END=36786169	GT	./.
chr1	36786170	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786171	.	C	.	.	LowGQX	END=36786172	GT	./.
chr1	36786173	.	A	.	.	LowGQX	END=36786177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786178	.	G	.	.	LowGQX	.	GT	./.
chr1	36786179	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786180	.	A	.	.	LowGQX	END=36786181	GT	./.
chr1	36786182	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786183	.	T	.	.	LowGQX	.	GT	./.
chr1	36786184	.	G	.	.	LowGQX	END=36786186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786187	.	T	.	.	LowGQX	.	GT	./.
chr1	36786188	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786189	.	C	.	.	LowGQX	.	GT	./.
chr1	36786190	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786191	.	A	.	.	LowGQX	END=36786192	GT	./.
chr1	36786193	.	A	.	.	LowGQX	END=36786199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786200	.	G	.	.	LowGQX	END=36786201	GT	./.
chr1	36786202	.	G	.	.	LowGQX	END=36786207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786208	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	36786209	.	A	.	.	LowGQX	END=36786210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786211	.	A	.	.	LowGQX	.	GT	./.
chr1	36786212	.	G	.	.	LowGQX	END=36786226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786227	.	C	.	.	LowGQX	.	GT	./.
chr1	36786228	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786229	.	A	.	.	LowGQX	.	GT	./.
chr1	36786230	.	A	.	.	LowGQX	END=36786258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786259	.	C	.	.	LowGQX	END=36786401	GT	./.
chr1	36786498	.	C	.	.	LowGQX	END=36786540	GT	./.
chr1	36786541	.	G	.	.	LowGQX	END=36786597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786643	.	T	.	.	LowGQX	END=36786651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786652	.	A	.	.	LowGQX	.	GT	./.
chr1	36786653	.	C	.	.	LowGQX	END=36786674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786675	.	A	.	.	LowGQX	.	GT	./.
chr1	36786676	.	C	.	.	LowGQX	END=36786678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786679	.	A	.	.	LowGQX	.	GT	./.
chr1	36786680	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786681	.	A	.	.	LowGQX	.	GT	./.
chr1	36786682	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786683	.	G	.	.	LowGQX	.	GT	./.
chr1	36786684	.	T	.	.	LowGQX	END=36786689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36786690	.	A	.	.	LowGQX	END=36786742	GT	./.
chr1	36787894	.	C	.	.	LowGQX	END=36788333	GT	./.
chr1	36788496	.	A	.	.	LowGQX	END=36788709	GT	./.
chr1	36793434	.	A	.	.	LowGQX	END=36793450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793451	.	G	.	.	LowGQX	.	GT	./.
chr1	36793452	.	G	.	.	LowGQX	END=36793455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793456	.	A	.	.	LowGQX	.	GT	./.
chr1	36793457	.	C	.	.	LowGQX	END=36793459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793460	.	G	.	.	LowGQX	.	GT	./.
chr1	36793461	.	C	.	.	LowGQX	END=36793463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793464	.	T	.	.	LowGQX	.	GT	./.
chr1	36793465	.	C	.	.	LowGQX	END=36793466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793467	.	C	.	.	LowGQX	.	GT	./.
chr1	36793468	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793469	.	A	.	.	LowGQX	.	GT	./.
chr1	36793470	.	C	.	.	LowGQX	END=36793471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793472	.	C	.	.	LowGQX	END=36793473	GT	./.
chr1	36793474	.	C	.	.	LowGQX	END=36793480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793481	.	G	.	.	LowGQX	.	GT	./.
chr1	36793482	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793483	.	T	.	.	LowGQX	END=36793487	GT	./.
chr1	36793488	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793489	.	A	.	.	LowGQX	END=36793490	GT	./.
chr1	36793491	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793492	.	G	.	.	LowGQX	.	GT	./.
chr1	36793493	.	C	.	.	LowGQX	END=36793495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793496	.	G	.	.	LowGQX	.	GT	./.
chr1	36793497	.	C	.	.	LowGQX	END=36793505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793506	.	A	.	.	LowGQX	.	GT	./.
chr1	36793507	.	G	.	.	LowGQX	END=36793508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36793509	.	C	.	.	LowGQX	.	GT	./.
chr1	36793510	.	C	.	.	LowGQX	END=36793513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36793514	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36793515	.	G	.	.	LowGQX	END=36793518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36793519	.	G	.	.	LowGQX	END=36793520	GT	./.
chr1	36793521	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36793522	.	C	.	.	LowGQX	.	GT	./.
chr1	36793523	.	G	.	.	LowGQX	END=36793525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36793526	.	G	.	.	LowGQX	.	GT	./.
chr1	36793527	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36793528	.	T	.	.	LowGQX	.	GT	./.
chr1	36793529	.	C	.	.	LowGQX	END=36793537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36793538	.	C	.	.	LowGQX	.	GT	./.
chr1	36793539	.	A	.	.	LowGQX	END=36793541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36793542	.	C	.	.	LowGQX	.	GT	./.
chr1	36793543	.	G	.	.	LowGQX	END=36793544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36793545	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36793546	.	T	.	.	LowGQX	END=36793552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36793553	.	T	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	36793554	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793555	.	T	.	.	LowGQX	.	GT	./.
chr1	36793556	.	G	.	.	LowGQX	END=36793561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793562	.	G	.	.	LowGQX	.	GT	./.
chr1	36793563	.	T	.	.	LowGQX	END=36793564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793565	.	T	.	.	LowGQX	.	GT	./.
chr1	36793566	.	C	.	.	LowGQX	END=36793583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793584	.	T	.	.	LowGQX	.	GT	./.
chr1	36793585	.	C	.	.	LowGQX	END=36793597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793598	.	C	.	.	LowGQX	END=36793599	GT	./.
chr1	36793600	.	C	.	.	LowGQX	END=36793611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793612	.	C	.	.	LowGQX	.	GT	./.
chr1	36793613	.	T	.	.	LowGQX	END=36793627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793628	.	T	.	.	LowGQX	.	GT	./.
chr1	36793629	.	G	.	.	LowGQX	END=36793650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36793651	.	T	.	.	LowGQX	END=36793758	GT	./.
chr1	36807354	.	T	.	.	LowGQX	END=36807576	GT	./.
chr1	36808799	.	C	.	.	LowGQX	END=36808927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36808928	.	G	.	.	LowGQX	END=36809051	GT	./.
chr1	36809459	.	A	.	.	LowGQX	END=36809628	GT	./.
chr1	36809719	.	A	.	.	LowGQX	END=36809867	GT	./.
chr1	36814299	.	A	.	.	LowGQX	END=36814418	GT	./.
chr1	36819942	.	G	.	.	LowGQX	END=36820041	GT	./.
chr1	36820805	.	A	.	.	LowGQX	END=36820858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36820859	.	T	.	.	LowGQX	END=36821036	GT	./.
chr1	36823838	.	A	.	.	LowGQX	END=36823985	GT	./.
chr1	36824336	.	A	.	.	LowGQX	END=36824438	GT	./.
chr1	36826820	.	A	.	.	LowGQX	END=36826935	GT	./.
chr1	36859357	.	C	.	.	LowGQX	END=36859666	GT	./.
chr1	36859667	.	G	.	.	LowGQX	END=36859700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36859701	.	C	.	.	LowGQX	.	GT	./.
chr1	36859702	.	C	.	.	LowGQX	END=36859732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36881625	.	G	.	.	LowGQX	END=36881656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36881657	.	T	.	.	LowGQX	.	GT	./.
chr1	36881658	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36881659	.	A	.	.	LowGQX	.	GT	./.
chr1	36881660	.	G	.	.	LowGQX	END=36881722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36881723	.	T	.	.	LowGQX	END=36881724	GT	./.
chr1	36883738	.	A	.	.	LowGQX	END=36883858	GT	./.
chr1	36884574	.	G	.	.	LowGQX	END=36884673	GT	./.
chr1	36886075	.	A	.	.	LowGQX	END=36886218	GT	./.
chr1	36887736	.	A	.	.	LowGQX	END=36887835	GT	./.
chr1	36888367	.	A	.	.	LowGQX	END=36888473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36888474	.	T	.	.	LowGQX	.	GT	./.
chr1	36888475	.	C	.	.	LowGQX	END=36888484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36888485	.	G	.	.	LowGQX	.	GT	./.
chr1	36888486	.	T	.	.	LowGQX	END=36888499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36888906	.	C	.	.	LowGQX	END=36888964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36888965	.	T	.	.	LowGQX	END=36889069	GT	./.
chr1	36893919	.	T	.	.	LowGQX	END=36894078	GT	./.
chr1	36897394	.	T	.	.	LowGQX	END=36897493	GT	./.
chr1	36898021	.	A	.	.	LowGQX	END=36898036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	36898037	.	G	T	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.731;DP=5;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=0.731;QD=0.63;ReadPosRankSum=0.731;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:4,1:5:30.28:30,0,80:60:3:0.200
chr1	36898038	.	C	.	.	LowGQX	END=36898046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	36898047	.	G	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	36898048	.	T	.	.	LowGQX	END=36898054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	36898055	.	G	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	36898056	.	C	.	.	LowGQX	END=36898066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	36898067	.	T	C	88.18	LowGQ;LowGQX	DP=5;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=17.64;SB=-74.66	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,5:5:9.03:120,9,0:60:9:1.000
chr1	36898068	.	T	.	.	LowGQX	END=36898084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	36898085	.	A	.	.	LowGQX	END=36898111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36898112	.	A	.	.	LowGQX	.	GT	./.
chr1	36898113	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36898114	.	G	.	.	LowGQX	END=36898134	GT	./.
chr1	36898135	.	G	.	.	LowGQX	END=36898240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36904355	.	A	.	.	LowGQX	END=36904513	GT	./.
chr1	36909570	.	G	.	.	LowGQX	END=36909669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36913435	.	G	.	.	LowGQX	END=36913534	GT	./.
chr1	36915857	.	A	.	.	LowGQX	END=36915972	GT	./.
chr1	36921387	.	A	.	.	LowGQX	END=36921432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36921433	.	T	.	.	LowGQX	.	GT	./.
chr1	36921434	.	G	.	.	LowGQX	END=36921440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36921441	.	T	.	.	LowGQX	END=36921528	GT	./.
chr1	36921786	.	A	.	.	LowGQX	END=36921981	GT	./.
chr1	36923504	.	G	.	.	LowGQX	END=36923603	GT	./.
chr1	36926286	.	G	.	.	LowGQX	END=36926385	GT	./.
chr1	36926840	.	C	.	.	LowGQX	END=36926939	GT	./.
chr1	36927677	.	C	.	.	LowGQX	END=36927725	GT	./.
chr1	36927726	.	G	.	.	LowGQX	END=36927732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36927733	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	36927734	.	G	.	.	LowGQX	END=36927776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36929380	.	C	.	.	LowGQX	END=36929392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36929393	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	36929394	.	T	.	.	LowGQX	END=36929396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	36929397	.	G	.	.	LowGQX	.	GT	./.
chr1	36929398	.	A	.	.	LowGQX	END=36929401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36929402	.	C	.	.	LowGQX	END=36929403	GT	./.
chr1	36929404	.	T	.	.	LowGQX	END=36929405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36929406	.	C	.	.	LowGQX	.	GT	./.
chr1	36929407	.	C	.	.	LowGQX	END=36929415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36929416	.	G	.	.	LowGQX	.	GT	./.
chr1	36929417	.	G	.	.	LowGQX	END=36929429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36929430	.	C	.	.	LowGQX	.	GT	./.
chr1	36929431	.	G	.	.	LowGQX	END=36929440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36929441	.	G	.	.	LowGQX	.	GT	./.
chr1	36929442	.	A	.	.	LowGQX	END=36929463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36929464	.	G	.	.	LowGQX	.	GT	./.
chr1	36929465	.	A	.	.	LowGQX	END=36929473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36929474	.	A	.	.	LowGQX	.	GT	./.
chr1	36929475	.	G	.	.	LowGQX	END=36929479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36929745	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36929746	.	C	.	.	LowGQX	.	GT	./.
chr1	36929747	.	T	.	.	LowGQX	END=36929757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36929758	.	A	.	.	LowGQX	.	GT	./.
chr1	36929759	.	G	.	.	LowGQX	END=36929774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36929775	.	A	.	.	LowGQX	.	GT	./.
chr1	36929776	.	G	.	.	LowGQX	END=36929779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36929780	.	A	.	.	LowGQX	.	GT	./.
chr1	36929781	.	C	.	.	LowGQX	END=36929785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36929786	.	C	.	.	LowGQX	.	GT	./.
chr1	36929787	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	36929788	.	C	.	.	LowGQX	END=36929878	GT	./.
chr1	36931646	.	C	.	.	PASS	END=36931656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:88:60
chr1	36931657	.	G	.	.	PASS	END=36931763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	36931764	.	T	.	.	PASS	END=36931796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	36931797	.	C	.	.	PASS	END=36931801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	36931802	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:60
chr1	36931803	.	T	.	.	PASS	END=36931818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	36931819	.	A	.	.	PASS	END=36931833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	36931834	.	T	.	.	PASS	END=36931836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	36931837	.	C	.	.	PASS	END=36931843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	36931844	.	T	.	.	PASS	END=36931845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	36931846	.	G	.	.	PASS	END=36931852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	36931907	.	G	.	.	PASS	END=36931914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	36931915	.	A	.	.	PASS	END=36931917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	36931918	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:45:60
chr1	36931919	.	C	.	.	PASS	END=36931922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	36931923	.	A	.	.	PASS	END=36931929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	36931930	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr1	36931931	.	G	.	.	PASS	END=36931934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	36931935	.	C	.	.	PASS	END=36931939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	36931940	.	A	.	.	PASS	END=36931942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	36931943	.	G	.	.	PASS	END=36931945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	36931946	.	C	.	.	PASS	END=36931953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	36931954	.	A	.	.	PASS	END=36931955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	36931956	.	C	.	.	PASS	END=36931981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	36931982	.	C	.	.	PASS	END=36931991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	36931992	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:51:60
chr1	36931993	.	G	.	.	PASS	END=36932014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	36932015	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:75:60
chr1	36932016	.	T	.	.	PASS	END=36932038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	36932039	.	G	.	.	PASS	END=36932074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	36932075	.	C	.	.	PASS	END=36932144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	36932145	.	G	.	.	PASS	END=36932170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	36932171	.	G	.	.	PASS	END=36932202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	36932203	.	G	.	.	PASS	END=36932275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	36932276	.	C	.	.	PASS	END=36932377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	36932378	.	T	.	.	PASS	END=36932431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	36932432	.	C	.	.	PASS	END=36932448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	36932449	.	T	.	.	PASS	END=36932479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	36932480	.	C	.	.	PASS	END=36932517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	36932518	.	A	.	.	PASS	END=36932560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	36932780	.	A	.	.	PASS	END=36932918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	36932919	.	A	.	.	PASS	END=36932936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	36932937	.	T	.	.	PASS	END=36932963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	36933108	.	G	.	.	PASS	END=36933231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:87:60
chr1	36933232	.	T	.	.	PASS	END=36933261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	36933262	.	G	.	.	PASS	END=36933303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	36933372	.	G	.	.	PASS	END=36933414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	36933415	.	C	.	.	PASS	END=36933435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	36933436	.	C	.	.	PASS	END=36933446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	36933447	.	G	.	.	PASS	END=36933474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	36933475	.	G	.	.	PASS	END=36933509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	36933510	.	C	.	.	PASS	END=36933604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:268:99:60
chr1	36933605	.	C	.	.	PASS	END=36933614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:260:99:60
chr1	36933625	.	C	.	.	PASS	END=36933667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	36933668	.	A	.	.	PASS	END=36933707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	36933708	.	A	.	.	PASS	END=36933737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	36933738	.	A	.	.	PASS	END=36933769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	36933770	.	T	.	.	PASS	END=36933852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	36933853	.	G	.	.	PASS	END=36933873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	36934706	.	C	.	.	PASS	END=36934751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	36934752	.	C	.	.	PASS	END=36934797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	36934798	.	A	.	.	PASS	END=36934847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	36934848	.	C	.	.	PASS	END=36934887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	36934888	.	T	.	.	PASS	END=36934903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	36934904	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:63:60
chr1	36934905	.	T	.	.	PASS	END=36934909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	36935202	.	C	.	.	PASS	END=36935210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	36935211	.	C	.	.	PASS	END=36935246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	36935247	.	C	.	.	PASS	END=36935274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	36935275	.	T	.	.	PASS	END=36935396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	36935397	.	T	.	.	PASS	END=36935425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	36935426	.	C	.	.	PASS	END=36935449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	36935450	.	A	.	.	PASS	END=36935463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	36935464	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:67:60
chr1	36935465	.	G	.	.	PASS	END=36935486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	36935487	.	A	.	.	PASS	END=36935491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	36935492	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:40:60
chr1	36936983	.	T	.	.	PASS	END=36937001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	36937002	.	T	.	.	PASS	END=36937039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	36937040	.	T	.	.	PASS	END=36937058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	36937059	.	A	G	1786.41	PASS	BaseQRankSum=0.686;DP=162;Dels=0.00;FS=1.427;HRun=2;HaplotypeScore=20.1341;MQ=60;MQ0=0;MQRankSum=0.099;QD=11.03;ReadPosRankSum=-0.767;SB=-672.53	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:86,76:162:99:1816,0,2038:60:99:0.469
chr1	36937060	.	G	.	.	PASS	END=36937090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	36937091	.	C	.	.	PASS	END=36937218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	36937219	.	C	.	.	PASS	END=36937241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	36937242	.	C	.	.	PASS	END=36937264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	36937265	.	A	.	.	PASS	END=36937289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	36937290	.	A	.	.	PASS	END=36937298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	36937616	.	T	.	.	PASS	END=36937675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	36937676	.	C	.	.	PASS	END=36937685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	36937686	.	G	.	.	PASS	END=36937787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	36937788	.	G	.	.	PASS	END=36937831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	36937832	.	T	.	.	PASS	END=36937954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	36937955	.	A	.	.	PASS	END=36937983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	36937984	.	G	.	.	PASS	END=36938011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	36938012	.	A	.	.	PASS	END=36938043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	36938067	.	C	.	.	PASS	END=36938218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	36938219	.	A	.	.	PASS	END=36938260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	36938261	.	T	.	.	PASS	END=36938302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	36938303	.	C	.	.	PASS	END=36938305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	36938306	.	T	.	.	PASS	END=36938313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	36938314	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:60:60
chr1	36938315	.	C	.	.	PASS	END=36938324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	36938325	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:27:60
chr1	36938326	.	A	.	.	PASS	END=36938334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	36938335	.	G	.	.	PASS	END=36938337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	36938338	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	36938985	.	T	.	.	PASS	END=36939019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	36939020	.	C	.	.	PASS	END=36939034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	36939035	.	C	.	.	PASS	END=36939038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	36939039	.	C	.	.	PASS	END=36939060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	36939061	.	T	.	.	PASS	END=36939132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	36939133	.	G	.	.	PASS	END=36939199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:60
chr1	36939200	.	T	.	.	PASS	END=36939234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	36939235	.	C	.	.	PASS	END=36939274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	36939314	.	C	.	.	PASS	END=36939346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	36939347	.	G	.	.	PASS	END=36939475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	36939476	.	A	.	.	PASS	END=36939495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	36939496	.	T	.	.	PASS	END=36939523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	36939524	.	T	.	.	PASS	END=36939539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	36940927	.	T	.	.	PASS	END=36940937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	36940938	.	G	.	.	PASS	END=36940940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	36940941	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:60
chr1	36940942	.	T	.	.	PASS	END=36940951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	36940952	.	G	.	.	PASS	END=36940970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	36940971	.	G	.	.	PASS	END=36940972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	36940973	.	C	.	.	PASS	END=36940976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	36940977	.	C	.	.	PASS	END=36940978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	36940979	.	G	.	.	PASS	END=36940995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	36940996	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:69:60
chr1	36940997	.	C	.	.	PASS	END=36941023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:94:60
chr1	36941024	.	C	.	.	PASS	END=36941054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	36941055	.	G	.	.	PASS	END=36941097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	36941098	.	C	.	.	PASS	END=36941155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	36941156	.	A	.	.	PASS	END=36941207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	36941208	.	G	.	.	PASS	END=36941240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	36941241	.	G	.	.	PASS	END=36941255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	36941256	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr1	36941257	.	G	.	.	PASS	END=36941261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	36941262	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:72:60
chr1	36941263	.	A	.	.	PASS	END=36941269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	36941270	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:60:60
chr1	36941271	.	A	.	.	PASS	END=36941274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	36941275	.	C	.	.	PASS	END=36941290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	36941291	.	T	.	.	PASS	END=36941309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	36941310	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:27:60
chr1	36941311	.	T	.	.	PASS	END=36941320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	36941321	.	A	.	.	PASS	END=36941325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	36944983	.	C	.	.	PASS	END=36945000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	36945001	.	C	.	.	PASS	END=36945025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	36945026	.	A	.	.	PASS	END=36945062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	36945063	.	G	.	.	PASS	END=36945148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	37267450	.	G	.	.	LowGQX	END=37267454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	37267455	.	G	.	.	LowGQX	END=37267459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	37267460	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	37267461	.	C	.	.	LowGQX	END=37267466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	37267467	.	G	.	.	PASS	END=37267472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	37267473	.	G	.	.	LowGQX	END=37267475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	37267476	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	37267477	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	37267478	.	T	.	.	PASS	END=37267486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	37267487	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	37267488	.	C	.	.	PASS	END=37267494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	37267495	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:42:60
chr1	37267496	.	C	.	.	PASS	END=37267498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	37267499	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:42:60
chr1	37267500	.	G	.	.	PASS	END=37267504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	37267505	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:3:60
chr1	37267506	.	A	.	.	PASS	END=37267519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	37267520	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	37267521	.	G	.	.	PASS	END=37267522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	37267523	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	37267524	.	T	.	.	PASS	END=37267528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	37267529	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	37267530	.	C	.	.	PASS	END=37267533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	37267534	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	37267535	.	T	.	.	PASS	END=37267539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	37267540	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	37267541	.	C	.	.	PASS	END=37267552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	37267553	.	T	.	.	PASS	END=37267554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	37267555	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:60
chr1	37267556	.	C	.	.	PASS	END=37267568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	37267569	.	C	.	.	LowGQX	END=37267570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:27:60
chr1	37267571	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	37267572	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:2:60
chr1	37267573	.	G	.	.	PASS	END=37267574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	37267575	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	37267576	.	T	.	.	PASS	END=37267582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	37267583	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:1:60
chr1	37267584	.	G	.	.	PASS	END=37267587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	37267588	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	37267589	.	G	.	.	PASS	END=37267602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	37267603	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	37267604	.	G	.	.	PASS	END=37267606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	37267607	.	A	.	.	PASS	END=37267610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	37267611	.	A	.	.	PASS	END=37267623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	37267624	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	37267625	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	37267626	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	37267627	.	A	.	.	PASS	END=37267640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	37267641	.	G	.	.	PASS	END=37267643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	37267644	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	37267645	.	C	.	.	PASS	END=37267648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	37270533	.	A	.	.	PASS	END=37270560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	37270561	.	G	.	.	PASS	END=37270604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	37270605	.	T	.	.	PASS	END=37270830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	37270831	.	T	.	.	PASS	END=37270840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	37271703	.	A	.	.	PASS	END=37271718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:93:60
chr1	37271719	.	A	.	.	PASS	END=37271745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	37271746	.	C	.	.	PASS	END=37271818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	37271819	.	A	.	.	PASS	END=37271929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	37282659	.	A	.	.	PASS	END=37282662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	37282663	.	T	.	.	PASS	END=37282685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	37282686	.	T	.	.	PASS	END=37282691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	37282692	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:69:60
chr1	37282693	.	C	.	.	PASS	END=37282726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	37282727	.	G	.	.	PASS	END=37282796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr1	37282797	.	G	.	.	PASS	END=37282858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	37282859	.	T	.	.	PASS	END=37282878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	37282879	.	C	.	.	PASS	END=37282880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	37285335	.	A	.	.	PASS	END=37285425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	37285426	.	T	.	.	PASS	END=37285442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	37285443	.	A	.	.	PASS	END=37285457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	37291202	.	A	.	.	PASS	END=37291366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	37291367	.	A	.	.	PASS	END=37291421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	37291422	.	T	.	.	PASS	END=37291429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	37307335	.	A	.	.	PASS	END=37307350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	37307351	.	C	.	.	PASS	END=37307419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	37307420	.	T	.	.	PASS	END=37307532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	37307533	.	G	.	.	PASS	END=37307542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	37315910	.	A	.	.	PASS	END=37316027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	37319214	.	A	.	.	PASS	END=37319253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	37319254	.	G	.	.	PASS	END=37319325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	37324707	.	A	.	.	PASS	END=37324760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:250:99:60
chr1	37324761	.	T	.	.	PASS	END=37324835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:284:99:60
chr1	37324836	.	A	.	.	PASS	END=37324854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	37325432	.	C	.	.	PASS	END=37325446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	37325447	.	T	.	.	PASS	END=37325476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	37325477	.	A	C	2180.02	PASS	BaseQRankSum=2.356;DP=168;Dels=0.00;FS=6.084;HRun=2;HaplotypeScore=22.9342;MQ=60;MQ0=0;MQRankSum=0.812;QD=12.98;ReadPosRankSum=1.693;SB=-1001.18	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:80,87:168:99:2210,0,1579:60:99:0.521
chr1	37325478	.	C	.	.	PASS	END=37325538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	37325539	.	T	.	.	PASS	END=37325605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	37325606	.	A	.	.	PASS	END=37325620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	37335326	.	G	.	.	PASS	END=37335422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	37335423	.	A	.	.	PASS	END=37335425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	37337787	.	A	.	.	PASS	END=37337807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	37337808	.	G	.	.	PASS	END=37337821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	37337822	.	G	.	.	PASS	END=37337834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	37337835	.	A	.	.	PASS	END=37337838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	37337839	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:39:60
chr1	37337840	.	G	.	.	PASS	END=37337848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	37337849	.	G	.	.	PASS	END=37337871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	37337872	.	A	.	.	PASS	END=37337876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	37337877	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:33:60
chr1	37337878	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:75:60
chr1	37337879	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:36:60
chr1	37337880	.	G	.	.	PASS	END=37337895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:60
chr1	37337896	.	T	.	.	PASS	END=37337897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:51:60
chr1	37337898	.	G	.	.	PASS	END=37337922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:60
chr1	37337923	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:60
chr1	37337924	.	G	.	.	PASS	END=37337929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:57:60
chr1	37337930	.	T	.	.	PASS	END=37337959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:60
chr1	37337960	.	T	.	.	PASS	END=37337961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:45:60
chr1	37337962	.	G	.	.	PASS	END=37337966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:60
chr1	37337967	.	A	.	.	PASS	END=37337972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	37346233	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:69:60
chr1	37346234	.	C	.	.	PASS	END=37346238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	37346239	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:56:60
chr1	37346240	.	C	.	.	PASS	END=37346290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	37346291	.	T	.	.	PASS	END=37346343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	37346344	.	G	.	.	PASS	END=37346349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	37346350	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:44:60
chr1	37346351	.	T	.	.	PASS	END=37346368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	37346369	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:63:60
chr1	37346370	.	G	.	.	PASS	END=37346385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	37346386	.	G	.	.	PASS	END=37346397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	37346398	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:68:60
chr1	37346399	.	T	.	.	PASS	END=37346428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	37346429	.	T	.	.	PASS	END=37346452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	37346453	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:33:60
chr1	37346454	.	C	.	.	PASS	END=37346494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	37356519	.	A	.	.	LowGQX	END=37356521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	37356522	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	37356523	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	37356524	.	T	.	.	PASS	END=37356527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	37356528	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	37356529	.	G	.	.	PASS	END=37356531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	37356532	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	37356533	.	C	.	.	PASS	END=37356541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	37356542	.	T	.	.	LowGQX	END=37356545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	37356546	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:0:60
chr1	37356547	.	T	.	.	LowGQX	END=37356549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	37356550	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	37356551	.	A	.	.	LowGQX	END=37356552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	37356553	.	T	.	.	PASS	END=37356555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	37356556	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	37356557	.	T	.	.	PASS	END=37356567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	37356568	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:42:60
chr1	37356569	.	C	.	.	PASS	END=37356570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	37356571	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	37356572	.	A	.	.	PASS	END=37356576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	37356577	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	37356578	.	A	.	.	PASS	END=37356589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	37356590	.	G	.	.	PASS	END=37356594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:60
chr1	37356595	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:33:60
chr1	37356596	.	G	.	.	PASS	END=37356597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr1	37356598	.	G	.	.	PASS	END=37356604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chr1	37356605	.	T	.	.	PASS	END=37356628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	37356629	.	A	.	.	PASS	END=37356635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	37356636	.	G	.	.	PASS	END=37356639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:60
chr1	37356640	.	T	.	.	PASS	END=37356657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	37356658	.	A	.	.	PASS	END=37356660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chr1	37356661	.	T	.	.	PASS	END=37356666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	37356667	.	T	.	.	PASS	END=37356669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chr1	37356670	.	G	.	.	PASS	END=37356693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	37356694	.	C	.	.	PASS	END=37356697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	37356698	.	C	.	.	PASS	END=37356699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:60
chr1	37499543	.	T	.	.	PASS	END=37499554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	37499555	.	C	.	.	PASS	END=37499576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	37499577	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:99:60
chr1	37499578	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:70:60
chr1	37499579	.	T	.	.	PASS	END=37499677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:93:60
chr1	37499678	.	A	.	.	PASS	END=37499705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	37499706	.	T	.	.	PASS	END=37499711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:69:60
chr1	37941096	.	C	.	.	LowGQX	END=37941278	GT	./.
chr1	37941279	.	C	.	.	LowGQX	END=37941353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	37941354	.	T	.	.	LowGQX	.	GT	./.
chr1	37941355	.	G	.	.	LowGQX	END=37941357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	37941358	.	A	.	.	LowGQX	.	GT	./.
chr1	37941359	.	C	.	.	LowGQX	END=37941370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	37941371	.	A	.	.	LowGQX	.	GT	./.
chr1	37941372	.	C	.	.	LowGQX	END=37941380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	37941381	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	37941382	.	G	.	.	LowGQX	END=37941432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	37941433	.	T	.	.	LowGQX	.	GT	./.
chr1	37941434	.	G	.	.	LowGQX	END=37941531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	37941532	.	G	.	.	LowGQX	END=37941542	GT	./.
chr1	37945889	.	A	.	.	LowGQX	END=37946032	GT	./.
chr1	37947200	.	A	.	.	LowGQX	END=37947438	GT	./.
chr1	37948033	.	A	.	.	LowGQX	END=37949214	GT	./.
chr1	37959289	.	T	.	.	LowGQX	END=37959442	GT	./.
chr1	37959655	.	G	.	.	LowGQX	END=37959754	GT	./.
chr1	37961453	.	C	.	.	LowGQX	END=37961552	GT	./.
chr1	37962149	.	T	.	.	LowGQX	END=37962248	GT	./.
chr1	37962273	.	A	.	.	LowGQX	END=37962372	GT	./.
chr1	37967403	.	A	.	.	LowGQX	END=37967599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	37974852	.	A	.	.	LowGQX	END=37974951	GT	./.
chr1	37975050	.	A	.	.	LowGQX	END=37975149	GT	./.
chr1	37979022	.	A	.	.	LowGQX	END=37979053	GT	./.
chr1	37979054	.	C	.	.	LowGQX	END=37979084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	37979085	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	37979086	.	C	.	.	LowGQX	END=37979163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	37980193	.	T	.	.	LowGQX	END=37980352	GT	./.
chr1	38003347	.	T	.	.	PASS	END=38003427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	38003428	.	T	.	.	PASS	END=38003463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	38003464	.	T	.	.	PASS	END=38003604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	38003605	.	T	.	.	PASS	END=38003614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	38003615	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:93:99:60
chr1	38005756	.	A	.	.	PASS	END=38005857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	38005858	.	G	.	.	PASS	END=38005945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	38005946	.	A	.	.	PASS	END=38005981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	38005982	.	C	.	.	PASS	END=38006129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	38006130	.	C	.	.	PASS	END=38006244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	38006245	.	A	.	.	PASS	END=38006343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	38006344	.	G	.	.	PASS	END=38006358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	38018244	.	A	.	.	PASS	END=38018316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	38018317	.	C	.	.	PASS	END=38018350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	38019575	.	C	.	.	PASS	END=38019582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	38019583	.	A	.	.	PASS	END=38019677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	38019678	.	A	.	.	PASS	END=38019832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	38022528	.	C	.	.	LowGQX	END=38022678	GT	./.
chr1	38023202	.	A	.	.	LowGQX	END=38023381	GT	./.
chr1	38024926	.	A	.	.	LowGQX	END=38025048	GT	./.
chr1	38025049	.	G	.	.	LowGQX	END=38025099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38027156	.	A	.	.	LowGQX	END=38027220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	38027221	.	G	.	.	LowGQX	END=38027239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	38027240	.	C	.	.	LowGQX	END=38027259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	38027260	.	T	.	.	LowGQX	END=38027294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	38027295	.	G	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	38027296	.	C	.	.	LowGQX	END=38027311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	38027312	.	G	.	.	LowGQX	END=38027335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	38027336	.	A	.	.	LowGQX	END=38027338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	38027680	.	A	.	.	LowGQX	END=38027848	GT	./.
chr1	38030595	.	A	.	.	LowGQX	END=38030694	GT	./.
chr1	38032454	.	C	.	.	LowGQX	END=38032457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38032458	.	A	.	.	LowGQX	.	GT	./.
chr1	38032459	.	C	.	.	LowGQX	END=38032462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38032463	.	T	.	.	LowGQX	END=38032488	GT	./.
chr1	38032489	.	T	.	.	LowGQX	END=38032496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38032497	.	C	.	.	LowGQX	.	GT	./.
chr1	38032498	.	C	.	.	LowGQX	END=38032610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38033270	.	T	.	.	LowGQX	END=38033293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38033294	.	T	.	.	LowGQX	END=38033369	GT	./.
chr1	38033868	.	A	.	.	LowGQX	END=38033967	GT	./.
chr1	38034450	.	A	.	.	LowGQX	END=38034856	GT	./.
chr1	38034857	.	T	.	.	LowGQX	END=38034905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38039942	.	A	.	.	LowGQX	END=38040059	GT	./.
chr1	38040264	.	A	.	.	LowGQX	END=38040426	GT	./.
chr1	38041194	.	A	.	.	LowGQX	END=38041353	GT	./.
chr1	38042027	.	A	.	.	LowGQX	END=38042159	GT	./.
chr1	38046943	.	A	.	.	LowGQX	END=38046959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	38046960	.	G	.	.	LowGQX	END=38047001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38047002	.	C	.	.	LowGQX	END=38047146	GT	./.
chr1	38047822	.	A	.	.	LowGQX	END=38047880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38047881	.	G	.	.	LowGQX	END=38047939	GT	./.
chr1	38048377	.	A	.	.	LowGQX	END=38048539	GT	./.
chr1	38049452	.	A	.	.	LowGQX	END=38049551	GT	./.
chr1	38052910	.	A	.	.	LowGQX	END=38053098	GT	./.
chr1	38056264	.	T	.	.	LowGQX	END=38056282	GT	./.
chr1	38056283	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38056284	.	A	.	.	LowGQX	.	GT	./.
chr1	38056285	.	C	.	.	LowGQX	END=38056312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38056313	.	C	.	.	LowGQX	.	GT	./.
chr1	38056314	.	C	.	.	LowGQX	END=38056323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38056324	.	C	.	.	LowGQX	.	GT	./.
chr1	38056325	.	A	.	.	LowGQX	END=38056332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38056333	.	G	.	.	LowGQX	.	GT	./.
chr1	38056334	.	A	.	.	LowGQX	END=38056338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38056339	.	T	.	.	LowGQX	.	GT	./.
chr1	38056340	.	T	.	.	LowGQX	END=38056362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38056363	.	C	.	.	LowGQX	.	GT	./.
chr1	38056364	.	A	.	.	LowGQX	END=38056384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38056385	.	A	.	.	LowGQX	.	GT	./.
chr1	38056386	.	A	.	.	LowGQX	END=38056423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38056424	.	C	.	.	LowGQX	.	GT	./.
chr1	38056425	.	T	.	.	LowGQX	END=38056434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38056435	.	C	.	.	LowGQX	.	GT	./.
chr1	38056436	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38056437	.	C	.	.	LowGQX	.	GT	./.
chr1	38056438	.	G	.	.	LowGQX	END=38056448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38058311	.	A	.	.	LowGQX	END=38058410	GT	./.
chr1	38059356	.	T	.	.	LowGQX	END=38059428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38059429	.	C	.	.	LowGQX	.	GT	./.
chr1	38059430	.	C	.	.	LowGQX	END=38059455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38061342	.	C	.	.	LowGQX	END=38061357	GT	./.
chr1	38061358	.	A	.	.	LowGQX	END=38061441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38078376	.	C	.	.	LowGQX	END=38078377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	38078378	.	G	.	.	PASS	END=38078382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	38078383	.	G	.	.	PASS	END=38078403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	38078404	.	G	.	.	PASS	END=38078432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	38078433	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:36:60
chr1	38078434	.	G	.	.	PASS	END=38078452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	38078453	.	G	.	.	PASS	END=38078458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	38078459	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:54:60
chr1	38078460	.	T	.	.	PASS	END=38078483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	38078484	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:64:60
chr1	38078485	.	T	.	.	PASS	END=38078517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	38078518	.	T	.	.	PASS	END=38078556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	38078557	.	T	.	.	PASS	END=38078561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	38078562	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:74:60
chr1	38078563	.	C	.	.	PASS	END=38078566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	38078567	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:63:60
chr1	38078568	.	C	.	.	PASS	END=38078571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	38078572	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:63:60
chr1	38078573	.	C	.	.	PASS	END=38078584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	38078585	.	T	.	.	PASS	END=38078600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	38078601	.	A	.	.	PASS	END=38078629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	38078630	.	A	T	141.79	PASS	BaseQRankSum=0.917;DP=27;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.8806;MQ=60;MQ0=0;MQRankSum=-0.972;QD=5.25;ReadPosRankSum=0.306;SB=-27.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:18,8:27:99:172,0,512:60:99:0.308
chr1	38078631	.	T	.	.	PASS	END=38078633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	38078634	.	G	.	.	PASS	END=38078640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	38078641	.	G	.	.	PASS	END=38078644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	38079325	.	C	.	.	PASS	END=38079374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	38079375	.	C	.	.	PASS	END=38079390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	38079391	.	C	.	.	PASS	END=38079422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	38079423	.	G	.	.	PASS	END=38079486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	38079487	.	A	.	.	PASS	END=38079541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	38079542	.	C	.	.	PASS	END=38079577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	38079578	.	A	.	.	PASS	END=38079608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	38079609	.	G	.	.	PASS	END=38079615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	38079805	.	C	.	.	PASS	END=38079827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	38079828	.	T	.	.	PASS	END=38079852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	38079853	.	T	.	.	PASS	END=38079933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	38079934	.	G	.	.	PASS	END=38080019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:272:99:60
chr1	38080020	.	G	.	.	PASS	END=38080056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr1	38082105	.	A	.	.	PASS	END=38082106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	38082107	.	T	.	.	LowGQX	END=38082110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	38082111	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	38082112	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	38082113	.	G	.	.	PASS	END=38082121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	38082122	.	G	A	130.29	SB	BaseQRankSum=0.452;DP=14;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=1.356;QD=9.31;ReadPosRankSum=1.097;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:8,6:14:99:160,0,205:60:99:0.429
chr1	38082123	.	C	T	166.77	SB	BaseQRankSum=1.226;DP=14;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=0.323;QD=11.91;ReadPosRankSum=0.968;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:8,6:14:99:197,0,231:60:99:0.429
chr1	38082124	.	C	.	.	PASS	END=38082129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	38082130	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	38082131	.	C	.	.	PASS	END=38082135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	38082136	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	38082137	.	C	.	.	PASS	END=38082143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	38082144	.	G	.	.	PASS	END=38082147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	38082148	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:60
chr1	38082149	.	C	.	.	PASS	END=38082154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	38082155	.	C	.	.	PASS	END=38082164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	38082165	.	T	.	.	PASS	END=38082170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	38082171	.	T	.	.	PASS	END=38082184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	38082185	.	G	.	.	PASS	END=38082235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:77:60
chr1	38082236	.	A	.	.	PASS	END=38082257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	38082258	.	T	.	.	PASS	END=38082259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:75:60
chr1	38082260	.	A	.	.	PASS	END=38082333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:80:60
chr1	38082334	.	C	.	.	PASS	END=38082344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	38082345	.	T	.	.	PASS	END=38082372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	38082373	.	A	.	.	PASS	END=38082382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	38082383	.	G	.	.	PASS	END=38082390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	38082391	.	C	.	.	PASS	END=38082398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	38095189	.	C	.	.	PASS	END=38095205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	38095206	.	G	.	.	PASS	END=38095228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	38095229	.	C	.	.	PASS	END=38095310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	38095311	.	A	.	.	PASS	END=38095355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	38095356	.	C	.	.	PASS	END=38095380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	38095381	.	A	.	.	PASS	END=38095384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	38095527	.	G	.	.	PASS	END=38095615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	38095616	.	A	.	.	PASS	END=38095626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	38148764	.	T	.	.	LowGQX	END=38148863	GT	./.
chr1	38148989	.	A	.	.	LowGQX	END=38149069	GT	./.
chr1	38149070	.	C	.	.	LowGQX	END=38149111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38151943	.	A	.	.	LowGQX	END=38152126	GT	./.
chr1	38155276	.	A	.	.	LowGQX	END=38155530	GT	./.
chr1	38155531	.	G	.	.	LowGQX	END=38155558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38155888	.	C	.	.	LowGQX	END=38156087	GT	./.
chr1	38158360	.	G	.	.	LowGQX	END=38158459	GT	./.
chr1	38158575	.	A	.	.	LowGQX	END=38158707	GT	./.
chr1	38161553	.	T	.	.	LowGQX	END=38161652	GT	./.
chr1	38164564	.	A	.	.	LowGQX	END=38164663	GT	./.
chr1	38166101	.	C	.	.	LowGQX	END=38166200	GT	./.
chr1	38167409	.	T	.	.	LowGQX	END=38167508	GT	./.
chr1	38168922	.	A	.	.	LowGQX	END=38168938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38168939	.	C	.	.	LowGQX	.	GT	./.
chr1	38168940	.	A	.	.	LowGQX	END=38168944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38168945	.	T	.	.	LowGQX	.	GT	./.
chr1	38168946	.	A	.	.	LowGQX	END=38168948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38168949	.	C	.	.	LowGQX	END=38169021	GT	./.
chr1	38171111	.	A	.	.	LowGQX	END=38171114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38171115	.	T	.	.	LowGQX	END=38171241	GT	./.
chr1	38172644	.	A	.	.	LowGQX	END=38172649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38172650	.	A	.	.	LowGQX	.	GT	./.
chr1	38172651	.	G	.	.	LowGQX	END=38172673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38172674	.	T	.	.	LowGQX	.	GT	./.
chr1	38172675	.	T	.	.	LowGQX	END=38172679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38172680	.	A	.	.	LowGQX	.	GT	./.
chr1	38172681	.	G	.	.	LowGQX	END=38172711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38172712	.	C	.	.	LowGQX	END=38172743	GT	./.
chr1	38173967	.	C	.	.	LowGQX	END=38174056	GT	./.
chr1	38174057	.	A	.	.	LowGQX	END=38174066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38181543	.	C	.	.	LowGQX	END=38181669	GT	./.
chr1	38184042	.	A	.	.	LowGQX	END=38184081	GT	./.
chr1	38184082	.	G	.	.	LowGQX	END=38184125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38184126	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	38184127	.	C	.	.	LowGQX	END=38184204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38184301	.	C	.	.	LowGQX	END=38184490	GT	./.
chr1	38185084	.	A	.	.	LowGQX	END=38185115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38185116	.	G	.	.	LowGQX	END=38185281	GT	./.
chr1	38185558	.	A	.	.	LowGQX	END=38185682	GT	./.
chr1	38185683	.	A	.	.	LowGQX	END=38185702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38185703	.	C	.	.	LowGQX	.	GT	./.
chr1	38185704	.	G	.	.	LowGQX	END=38185705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38185706	.	C	.	.	LowGQX	.	GT	./.
chr1	38185707	.	C	.	.	LowGQX	END=38185710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38185711	.	A	.	.	LowGQX	.	GT	./.
chr1	38185712	.	G	.	.	LowGQX	END=38185723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38185724	.	G	.	.	LowGQX	.	GT	./.
chr1	38185725	.	G	.	.	LowGQX	END=38185732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38186021	.	A	.	.	LowGQX	END=38186045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38186046	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	38186047	.	T	.	.	LowGQX	END=38186067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38186068	.	G	.	.	LowGQX	.	GT	./.
chr1	38186069	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38186070	.	A	.	.	LowGQX	.	GT	./.
chr1	38186071	.	G	.	.	LowGQX	END=38186072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38186073	.	C	.	.	LowGQX	.	GT	./.
chr1	38186074	.	A	.	.	LowGQX	END=38186077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38186078	.	A	.	.	LowGQX	END=38186079	GT	./.
chr1	38186080	.	C	.	.	LowGQX	END=38186086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38186087	.	A	.	.	LowGQX	.	GT	./.
chr1	38186088	.	C	.	.	LowGQX	END=38186092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38186093	.	T	.	.	LowGQX	END=38186094	GT	./.
chr1	38186095	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38186096	.	C	.	.	LowGQX	.	GT	./.
chr1	38186097	.	T	.	.	LowGQX	END=38186100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38186101	.	G	.	.	LowGQX	.	GT	./.
chr1	38186102	.	A	.	.	LowGQX	END=38186103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38186104	.	C	.	.	LowGQX	.	GT	./.
chr1	38186105	.	A	.	.	LowGQX	END=38186106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38186107	.	C	.	.	LowGQX	.	GT	./.
chr1	38186108	.	A	.	.	LowGQX	END=38186133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38186134	.	A	.	.	LowGQX	.	GT	./.
chr1	38186135	.	A	.	.	LowGQX	END=38186158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38186159	.	T	.	.	LowGQX	.	GT	./.
chr1	38186160	.	T	.	.	LowGQX	END=38186167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38186168	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	38186169	.	A	.	.	LowGQX	.	GT	./.
chr1	38186170	.	T	.	.	LowGQX	END=38186191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38186192	.	A	.	.	LowGQX	END=38186193	GT	./.
chr1	38186194	.	C	.	.	LowGQX	END=38186196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38186197	.	T	.	.	LowGQX	END=38186228	GT	./.
chr1	38186436	.	C	.	.	LowGQX	END=38186535	GT	./.
chr1	38187330	.	A	.	.	LowGQX	END=38187519	GT	./.
chr1	38187907	.	C	.	.	LowGQX	END=38188006	GT	./.
chr1	38188477	.	C	.	.	LowGQX	END=38188482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38188483	.	G	.	.	LowGQX	.	GT	./.
chr1	38188484	.	A	.	.	LowGQX	END=38188493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38188494	.	G	.	.	LowGQX	.	GT	./.
chr1	38188495	.	G	.	.	LowGQX	END=38188529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38188530	.	C	.	.	LowGQX	.	GT	./.
chr1	38188531	.	A	.	.	LowGQX	END=38188552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38188553	.	G	.	.	LowGQX	.	GT	./.
chr1	38188554	.	T	.	.	LowGQX	END=38188571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38188572	.	T	.	.	LowGQX	END=38188603	GT	./.
chr1	38188661	.	G	.	.	LowGQX	END=38188840	GT	./.
chr1	38188964	.	C	.	.	LowGQX	END=38189063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38192772	.	A	.	.	LowGQX	END=38192884	GT	./.
chr1	38197081	.	A	.	.	LowGQX	END=38197256	GT	./.
chr1	38200240	.	T	.	.	LowGQX	END=38200399	GT	./.
chr1	38200896	.	C	.	.	LowGQX	END=38201064	GT	./.
chr1	38218535	.	C	.	.	LowGQX	END=38218904	GT	./.
chr1	38219864	.	T	.	.	LowGQX	END=38220074	GT	./.
chr1	38227037	.	C	.	.	LowGQX	END=38227270	GT	./.
chr1	38227271	.	G	.	.	LowGQX	END=38227301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38227302	.	T	.	.	LowGQX	.	GT	./.
chr1	38227303	.	G	.	.	LowGQX	END=38227309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38227310	.	A	.	.	LowGQX	.	GT	./.
chr1	38227311	.	C	.	.	LowGQX	END=38227315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38227316	.	A	.	.	LowGQX	.	GT	./.
chr1	38227317	.	C	.	.	LowGQX	END=38227321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38227322	.	A	.	.	LowGQX	.	GT	./.
chr1	38227323	.	C	.	.	LowGQX	END=38227330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38227331	.	A	.	.	LowGQX	.	GT	./.
chr1	38227332	.	C	.	.	LowGQX	END=38227387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38227388	.	A	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	38227389	.	T	.	.	LowGQX	.	GT	./.
chr1	38227390	.	C	.	.	LowGQX	END=38227391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38227392	.	C	.	.	LowGQX	END=38227552	GT	./.
chr1	38227553	.	G	.	.	LowGQX	END=38227628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38227629	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	38227630	.	C	.	.	LowGQX	END=38227757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38228440	.	G	.	.	LowGQX	END=38228493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38228494	.	T	.	.	LowGQX	.	GT	./.
chr1	38228495	.	G	.	.	LowGQX	END=38228539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38230631	.	A	.	.	LowGQX	END=38230635	GT	./.
chr1	38230636	.	C	.	.	LowGQX	END=38230740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38259843	.	G	.	.	LowGQX	END=38260123	GT	./.
chr1	38260124	.	G	.	.	LowGQX	END=38260220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38260221	.	A	.	.	LowGQX	END=38260404	GT	./.
chr1	38261408	.	G	.	.	LowGQX	END=38261446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38261447	.	G	.	.	LowGQX	.	GT	./.
chr1	38261448	.	A	.	.	LowGQX	END=38261494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38261495	.	A	.	.	LowGQX	END=38261520	GT	./.
chr1	38262404	.	T	.	.	LowGQX	END=38262503	GT	./.
chr1	38265237	.	A	.	.	LowGQX	END=38265252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38265253	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	38265254	.	T	.	.	LowGQX	END=38265326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38265327	.	T	.	.	LowGQX	END=38265877	GT	./.
chr1	38269584	.	G	.	.	LowGQX	END=38269634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38269635	.	T	.	.	LowGQX	END=38269683	GT	./.
chr1	38269972	.	A	.	.	LowGQX	END=38270118	GT	./.
chr1	38272527	.	A	.	.	LowGQX	END=38272650	GT	./.
chr1	38272771	.	A	.	.	LowGQX	END=38272889	GT	./.
chr1	38273451	.	G	.	.	LowGQX	END=38273860	GT	./.
chr1	38274065	.	G	.	.	LowGQX	END=38274414	GT	./.
chr1	38274648	.	A	.	.	LowGQX	END=38274883	GT	./.
chr1	38274884	.	G	.	.	LowGQX	END=38274890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38280806	.	C	.	.	LowGQX	END=38281240	GT	./.
chr1	38283073	.	T	.	.	LowGQX	END=38283172	GT	./.
chr1	38287791	.	A	.	.	LowGQX	END=38288390	GT	./.
chr1	38289380	.	A	.	.	LowGQX	END=38289395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38289396	.	T	.	.	LowGQX	.	GT	./.
chr1	38289397	.	C	.	.	LowGQX	END=38289462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38289463	.	T	.	.	LowGQX	.	GT	./.
chr1	38289464	.	G	.	.	LowGQX	END=38289483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38289484	.	T	.	.	LowGQX	.	GT	./.
chr1	38289485	.	C	.	.	LowGQX	END=38289486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38292197	.	G	.	.	LowGQX	END=38292296	GT	./.
chr1	38293840	.	A	.	.	LowGQX	END=38293939	GT	./.
chr1	38297906	.	G	.	.	LowGQX	END=38298005	GT	./.
chr1	38300294	.	G	.	.	LowGQX	END=38300393	GT	./.
chr1	38300749	.	A	.	.	LowGQX	END=38300889	GT	./.
chr1	38301330	.	G	.	.	LowGQX	END=38301429	GT	./.
chr1	38304295	.	A	.	.	LowGQX	END=38304430	GT	./.
chr1	38305590	.	A	.	.	LowGQX	END=38305834	GT	./.
chr1	38306117	.	A	.	.	LowGQX	END=38306136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38306137	.	C	.	.	LowGQX	.	GT	./.
chr1	38306138	.	T	.	.	LowGQX	END=38306139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38306140	.	C	.	.	LowGQX	.	GT	./.
chr1	38306141	.	C	.	.	LowGQX	END=38306161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38306162	.	A	.	.	LowGQX	.	GT	./.
chr1	38306163	.	C	.	.	LowGQX	END=38306179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38306180	.	A	.	.	LowGQX	.	GT	./.
chr1	38306181	.	C	.	.	LowGQX	END=38306183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38306184	.	A	.	.	LowGQX	END=38306185	GT	./.
chr1	38306186	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38306187	.	A	.	.	LowGQX	.	GT	./.
chr1	38306188	.	C	.	.	LowGQX	END=38306207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38306208	.	A	.	.	LowGQX	.	GT	./.
chr1	38306209	.	C	.	.	LowGQX	END=38306215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38306216	.	G	.	.	LowGQX	.	GT	./.
chr1	38322921	.	A	.	.	LowGQX	END=38323332	GT	./.
chr1	38327985	.	G	.	.	LowGQX	END=38328104	GT	./.
chr1	38329982	.	A	.	.	LowGQX	END=38330097	GT	./.
chr1	38331431	.	A	.	.	LowGQX	END=38331562	GT	./.
chr1	38332124	.	A	.	.	LowGQX	END=38332223	GT	./.
chr1	38334171	.	A	.	.	LowGQX	END=38334175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38334176	.	C	.	.	LowGQX	END=38334178	GT	./.
chr1	38334179	.	G	.	.	LowGQX	END=38334180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38334181	.	C	.	.	LowGQX	.	GT	./.
chr1	38334182	.	A	.	.	LowGQX	END=38334187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38334188	.	T	.	.	LowGQX	.	GT	./.
chr1	38334189	.	C	.	.	LowGQX	END=38334191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38334192	.	T	.	.	LowGQX	.	GT	./.
chr1	38334193	.	A	.	.	LowGQX	END=38334199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38334200	.	A	.	.	LowGQX	.	GT	./.
chr1	38334201	.	T	.	.	LowGQX	END=38334204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38334205	.	C	.	.	LowGQX	.	GT	./.
chr1	38334206	.	C	.	.	LowGQX	END=38334212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38334213	.	C	.	.	LowGQX	.	GT	./.
chr1	38334214	.	A	.	.	LowGQX	END=38334218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38334219	.	T	.	.	LowGQX	.	GT	./.
chr1	38334220	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38334221	.	T	.	.	LowGQX	END=38334222	GT	./.
chr1	38334223	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38334224	.	G	.	.	LowGQX	.	GT	./.
chr1	38334225	.	G	.	.	LowGQX	END=38334237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38334238	.	G	.	.	LowGQX	.	GT	./.
chr1	38334239	.	G	.	.	LowGQX	END=38334250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38334251	.	G	.	.	LowGQX	END=38334288	GT	./.
chr1	38338600	.	A	.	.	LowGQX	END=38338657	GT	./.
chr1	38338658	.	G	.	.	LowGQX	END=38338677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38338678	.	A	.	.	LowGQX	END=38338679	GT	./.
chr1	38338680	.	A	.	.	LowGQX	END=38338702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38338703	.	A	.	.	LowGQX	END=38338704	GT	./.
chr1	38338705	.	A	.	.	LowGQX	END=38338794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38338795	.	A	G	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	38338796	.	T	.	.	LowGQX	END=38338817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38338818	.	G	.	.	LowGQX	.	GT	./.
chr1	38338819	.	T	.	.	LowGQX	END=38338839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38339663	.	A	.	.	LowGQX	END=38339829	GT	./.
chr1	38341276	.	A	.	.	LowGQX	END=38341390	GT	./.
chr1	38343858	.	A	.	.	LowGQX	END=38343997	GT	./.
chr1	38345755	.	A	.	.	LowGQX	END=38345868	GT	./.
chr1	38348477	.	A	.	.	LowGQX	END=38348592	GT	./.
chr1	38351308	.	A	.	.	LowGQX	END=38351499	GT	./.
chr1	38352558	.	A	.	.	LowGQX	END=38352635	GT	./.
chr1	38352636	.	T	.	.	LowGQX	END=38352678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38353021	.	A	.	.	LowGQX	END=38353139	GT	./.
chr1	38353913	.	A	.	.	LowGQX	END=38354018	GT	./.
chr1	38355227	.	A	.	.	LowGQX	END=38355398	GT	./.
chr1	38357028	.	A	.	.	LowGQX	END=38357031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38357032	.	T	.	.	LowGQX	END=38357128	GT	./.
chr1	38397156	.	G	.	.	LowGQX	END=38397727	GT	./.
chr1	38406358	.	A	.	.	LowGQX	.	GT	./.
chr1	38406359	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38406360	.	C	.	.	LowGQX	.	GT	./.
chr1	38406361	.	T	.	.	LowGQX	END=38406363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38406364	.	A	.	.	LowGQX	.	GT	./.
chr1	38406365	.	C	.	.	LowGQX	END=38406388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38406389	.	A	.	.	LowGQX	END=38406390	GT	./.
chr1	38406391	.	C	.	.	LowGQX	END=38406398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38406399	.	T	.	.	LowGQX	.	GT	./.
chr1	38406400	.	T	.	.	LowGQX	END=38406405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38406406	.	A	.	.	LowGQX	.	GT	./.
chr1	38406407	.	C	.	.	LowGQX	END=38406408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38406409	.	A	.	.	LowGQX	.	GT	./.
chr1	38406410	.	A	.	.	LowGQX	END=38406412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38406413	.	G	.	.	LowGQX	.	GT	./.
chr1	38406414	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38406415	.	C	.	.	LowGQX	.	GT	./.
chr1	38406416	.	A	.	.	LowGQX	END=38406417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38406418	.	T	.	.	LowGQX	.	GT	./.
chr1	38406419	.	T	.	.	LowGQX	END=38406422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38406423	.	A	.	.	LowGQX	END=38406425	GT	./.
chr1	38406426	.	C	.	.	LowGQX	END=38406430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38406431	.	C	.	.	LowGQX	.	GT	./.
chr1	38406432	.	T	.	.	LowGQX	END=38406448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38406449	.	A	.	.	LowGQX	.	GT	./.
chr1	38406450	.	G	.	.	LowGQX	END=38406459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38406460	.	C	.	.	LowGQX	.	GT	./.
chr1	38406461	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38406462	.	C	.	.	LowGQX	.	GT	./.
chr1	38406463	.	A	.	.	LowGQX	END=38406470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38406471	.	C	.	.	LowGQX	END=38406472	GT	./.
chr1	38409277	.	C	.	.	LowGQX	END=38409376	GT	./.
chr1	38409466	.	A	.	.	LowGQX	END=38409567	GT	./.
chr1	38411426	.	A	.	.	LowGQX	END=38411525	GT	./.
chr1	38411903	.	C	.	.	LowGQX	END=38411998	GT	./.
chr1	38411999	.	C	.	.	LowGQX	END=38412002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38423847	.	A	.	.	LowGQX	END=38423946	GT	./.
chr1	38425770	.	C	.	.	LowGQX	END=38425782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38425783	.	A	.	.	LowGQX	END=38425869	GT	./.
chr1	38433712	.	T	.	.	LowGQX	END=38433811	GT	./.
chr1	38435024	.	A	.	.	LowGQX	END=38435138	GT	./.
chr1	38435241	.	A	.	.	LowGQX	END=38435409	GT	./.
chr1	38442541	.	C	.	.	LowGQX	END=38442640	GT	./.
chr1	38444390	.	A	.	.	LowGQX	END=38444496	GT	./.
chr1	38444497	.	G	.	.	LowGQX	END=38444501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38444644	.	A	.	.	LowGQX	END=38444653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38444654	.	C	.	.	LowGQX	.	GT	./.
chr1	38444655	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38444656	.	T	.	.	LowGQX	.	GT	./.
chr1	38444657	.	T	.	.	LowGQX	END=38444659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38444660	.	C	.	.	LowGQX	.	GT	./.
chr1	38444661	.	C	.	.	LowGQX	END=38444672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38444673	.	A	.	.	LowGQX	.	GT	./.
chr1	38444674	.	G	.	.	LowGQX	END=38444735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38444736	.	A	.	.	LowGQX	END=38444743	GT	./.
chr1	38445122	.	C	.	.	LowGQX	END=38445156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38445157	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	38445158	.	G	.	.	LowGQX	END=38445161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38445162	.	T	.	.	LowGQX	.	GT	./.
chr1	38445163	.	C	.	.	LowGQX	END=38445180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38445181	.	G	.	.	LowGQX	END=38445221	GT	./.
chr1	38446256	.	A	.	.	LowGQX	END=38446398	GT	./.
chr1	38447329	.	A	.	.	LowGQX	END=38447485	GT	./.
chr1	38449837	.	T	.	.	LowGQX	END=38449936	GT	./.
chr1	38450366	.	C	.	.	LowGQX	END=38450465	GT	./.
chr1	38453243	.	A	.	.	LowGQX	END=38453352	GT	./.
chr1	38453433	.	G	.	.	LowGQX	END=38453532	GT	./.
chr1	38455194	.	A	.	.	LowGQX	END=38455195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38455196	.	A	.	.	LowGQX	.	GT	./.
chr1	38455197	.	G	.	.	LowGQX	END=38455210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38455211	.	G	.	.	LowGQX	.	GT	./.
chr1	38455212	.	G	.	.	LowGQX	END=38455213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38455214	.	A	.	.	LowGQX	.	GT	./.
chr1	38455215	.	C	.	.	LowGQX	END=38455218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38455219	.	C	.	.	LowGQX	.	GT	./.
chr1	38455220	.	A	.	.	LowGQX	END=38455223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38455224	.	T	.	.	LowGQX	.	GT	./.
chr1	38455225	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38455226	.	C	.	.	LowGQX	.	GT	./.
chr1	38455227	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38455228	.	T	.	.	LowGQX	.	GT	./.
chr1	38455229	.	G	.	.	LowGQX	END=38455240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38455241	.	G	.	.	LowGQX	END=38455242	GT	./.
chr1	38455243	.	G	.	.	LowGQX	END=38455249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38455250	.	A	.	.	LowGQX	END=38455251	GT	./.
chr1	38455252	.	T	.	.	LowGQX	END=38455256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38455257	.	T	.	.	LowGQX	.	GT	./.
chr1	38455258	.	G	.	.	LowGQX	END=38455262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38455263	.	C	.	.	LowGQX	END=38455264	GT	./.
chr1	38455265	.	G	.	.	LowGQX	END=38455274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38455275	.	A	.	.	LowGQX	.	GT	./.
chr1	38455276	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38455277	.	C	.	.	LowGQX	END=38455280	GT	./.
chr1	38455281	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38455282	.	G	.	.	LowGQX	.	GT	./.
chr1	38455283	.	G	.	.	LowGQX	END=38455284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38455285	.	G	.	.	LowGQX	.	GT	./.
chr1	38455286	.	A	.	.	LowGQX	END=38455287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38455288	.	A	.	.	LowGQX	.	GT	./.
chr1	38455289	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38455290	.	A	.	.	LowGQX	END=38455293	GT	./.
chr1	38455540	.	A	.	.	LowGQX	END=38455555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38455556	.	T	.	.	LowGQX	.	GT	./.
chr1	38455557	.	G	.	.	LowGQX	END=38455572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38455573	.	A	.	.	LowGQX	END=38455639	GT	./.
chr1	38463075	.	G	.	.	LowGQX	END=38463233	GT	./.
chr1	38463354	.	A	.	.	LowGQX	END=38463544	GT	./.
chr1	38463605	.	T	.	.	LowGQX	END=38463806	GT	./.
chr1	38464644	.	A	.	.	LowGQX	END=38464822	GT	./.
chr1	38464927	.	A	.	.	LowGQX	END=38465086	GT	./.
chr1	38478457	.	T	.	.	LowGQX	END=38478556	GT	./.
chr1	38482012	.	T	.	.	LowGQX	END=38482111	GT	./.
chr1	38483338	.	A	.	.	LowGQX	END=38483444	GT	./.
chr1	38484134	.	A	.	.	LowGQX	END=38484225	GT	./.
chr1	38484226	.	A	.	.	LowGQX	END=38484251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38484728	.	T	.	.	LowGQX	END=38484827	GT	./.
chr1	38484923	.	A	.	.	LowGQX	END=38485057	GT	./.
chr1	38488369	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38488370	.	G	.	.	LowGQX	END=38488372	GT	./.
chr1	38488373	.	A	.	.	LowGQX	END=38488388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38488389	.	C	.	.	LowGQX	END=38488427	GT	./.
chr1	38488428	.	G	.	.	LowGQX	END=38488434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38488435	.	A	.	.	LowGQX	.	GT	./.
chr1	38488436	.	A	.	.	LowGQX	END=38488481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38488482	.	G	.	.	LowGQX	.	GT	./.
chr1	38488483	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38489209	.	T	.	.	LowGQX	END=38489308	GT	./.
chr1	38511046	.	C	.	.	LowGQX	END=38511071	GT	./.
chr1	38511072	.	G	.	.	LowGQX	END=38511097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38511098	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	38511099	.	G	.	.	LowGQX	END=38511144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	38511145	.	G	.	.	LowGQX	END=38511151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	38511152	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	38511153	.	C	.	.	LowGQX	END=38511158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	38511159	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	38511160	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	38511161	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	38511162	.	C	.	.	LowGQX	END=38511169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	38511170	.	C	.	.	LowGQX	END=38511176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	38511177	.	C	.	.	LowGQX	END=38511179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	38511180	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	38511181	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	38511182	.	A	.	.	LowGQX	END=38511184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	38511185	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:60
chr1	38511186	.	A	.	.	LowGQX	END=38511194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	38511195	.	G	.	.	LowGQX	END=38511197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	38511198	.	C	.	.	LowGQX	END=38511199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	38511200	.	G	.	.	LowGQX	END=38511201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	38511202	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	38511203	.	G	.	.	LowGQX	END=38511204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	38511205	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	38511206	.	C	.	.	LowGQX	END=38511209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	38511210	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	38511211	.	C	.	.	LowGQX	END=38511217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	38511218	.	C	.	.	LowGQX	END=38511219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	38511220	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	38511221	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:60
chr1	38511222	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	38511223	.	G	.	.	LowGQX	END=38511228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	38511229	.	C	.	.	LowGQX	END=38511230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:60
chr1	38511231	.	C	.	.	LowGQX	END=38511233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	38511234	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	38511235	.	T	.	.	LowGQX	END=38511236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	38511237	.	C	.	.	LowGQX	END=38511239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	38511240	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	38511241	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	38511242	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	38511243	.	C	.	.	LowGQX	END=38511245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	38511246	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	38511247	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	38511248	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	38511249	.	G	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	38511250	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	38511251	.	T	.	.	LowGQX	END=38511254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	38511255	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	38511256	.	A	.	.	LowGQX	END=38511260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	38511261	.	G	.	.	LowGQX	END=38511263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	38511264	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	38511265	.	C	.	.	LowGQX	END=38511267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	38511268	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	38511269	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	38511270	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	38511271	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:60
chr1	38511272	.	C	.	.	LowGQX	END=38511275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	38511276	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	38511277	.	T	.	.	LowGQX	END=38511278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	38511279	.	C	.	.	LowGQX	END=38511283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	38511284	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:1:60
chr1	38511285	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	38511286	.	T	.	.	LowGQX	END=38511300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	38511301	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	38511302	.	A	.	.	LowGQX	END=38511304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	38511305	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	38511306	.	G	.	.	LowGQX	END=38511316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	38511317	.	G	.	.	LowGQX	END=38511318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	38511319	.	G	.	.	LowGQX	END=38511324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	38511325	.	G	.	.	LowGQX	END=38511326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	38511327	.	C	.	.	LowGQX	END=38511329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	38511330	.	G	.	.	LowGQX	END=38511331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	38511332	.	G	.	.	LowGQX	END=38511335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	38511336	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	38511337	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	38511338	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	38511339	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	38511340	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:1:60
chr1	38511341	.	G	.	.	PASS	END=38511342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	38511343	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	38511344	.	A	.	.	PASS	END=38511345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	38511346	.	T	.	.	LowGQX	END=38511347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	38511348	.	G	.	.	PASS	END=38511350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	38511351	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	38511352	.	T	.	.	PASS	END=38511353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	38511354	.	G	.	.	LowGQX	END=38511355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	38511356	.	G	.	.	PASS	END=38511358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	38511359	.	C	.	.	LowGQX	END=38511360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	38511361	.	C	.	.	PASS	END=38511372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	38511373	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	38511374	.	C	.	.	PASS	END=38511389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:60
chr1	38511390	.	C	.	.	PASS	END=38511417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	38511418	.	A	.	.	PASS	END=38511427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	38511428	.	G	.	.	PASS	END=38511446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr1	38511447	.	G	.	.	PASS	END=38511460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr1	38511461	.	C	.	.	PASS	END=38511472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:69:60
chr1	38511473	.	T	.	.	PASS	END=38511567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	38511568	.	A	.	.	PASS	END=38511569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	38511570	.	C	.	.	PASS	END=38511590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	38511591	.	G	.	.	PASS	END=38511607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	38511608	.	C	.	.	PASS	END=38511624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	38511625	.	T	.	.	PASS	END=38511643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	38511644	.	A	.	.	PASS	END=38511648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	38511649	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	38511650	.	C	.	.	PASS	END=38511654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	38511655	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr1	38511656	.	C	.	.	LowGQX	END=38511671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	38511672	.	A	.	.	LowGQX	END=38511675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	38511676	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	38511677	.	C	.	.	LowGQX	END=38511681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	38511682	.	G	.	.	LowGQX	END=38511684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	38511685	.	T	.	.	LowGQX	END=38511686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	38511687	.	C	.	.	LowGQX	END=38511693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	38511694	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	38511695	.	C	.	.	LowGQX	END=38511698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	38511699	.	T	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	38511700	.	G	.	.	LowGQX	END=38511723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	38511724	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	38511725	.	G	.	.	LowGQX	END=38511744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	38511745	.	T	.	.	LowGQX	END=38511765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	38511766	.	T	.	.	LowGQX	END=38511781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38511782	.	C	.	.	LowGQX	END=38512418	GT	./.
chr1	38677427	.	C	.	.	LowGQX	END=38677449	GT	./.
chr1	38677450	.	A	.	.	LowGQX	END=38677456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38677457	.	C	.	.	LowGQX	.	GT	./.
chr1	38677458	.	C	.	.	LowGQX	END=38677463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38677464	.	G	.	.	LowGQX	.	GT	./.
chr1	38677465	.	T	.	.	LowGQX	END=38677467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38677468	.	T	.	.	LowGQX	.	GT	./.
chr1	38677469	.	G	.	.	LowGQX	END=38677470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38677471	.	T	.	.	LowGQX	.	GT	./.
chr1	38677472	.	C	.	.	LowGQX	END=38677477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38677478	.	A	.	.	LowGQX	.	GT	./.
chr1	38677479	.	G	.	.	LowGQX	END=38677491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38677492	.	T	.	.	LowGQX	.	GT	./.
chr1	38677493	.	C	.	.	LowGQX	END=38677526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38677770	.	C	.	.	LowGQX	END=38677821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	38677822	.	T	.	.	LowGQX	END=38678111	GT	./.
chr1	39305223	.	G	.	.	LowGQX	END=39305378	GT	./.
chr1	39311609	.	A	.	.	LowGQX	END=39311788	GT	./.
chr1	39317285	.	A	.	.	LowGQX	END=39317327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39317328	.	A	.	.	LowGQX	END=39317463	GT	./.
chr1	39317994	.	C	.	.	LowGQX	END=39318162	GT	./.
chr1	39321378	.	A	.	.	LowGQX	END=39321467	GT	./.
chr1	39321468	.	C	.	.	LowGQX	END=39321470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39321471	.	A	.	.	LowGQX	.	GT	./.
chr1	39321472	.	C	.	.	LowGQX	END=39321474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39321475	.	A	.	.	LowGQX	.	GT	./.
chr1	39321476	.	C	.	.	LowGQX	END=39321507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39321508	.	C	.	.	LowGQX	.	GT	./.
chr1	39321509	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39321510	.	T	.	.	LowGQX	.	GT	./.
chr1	39321511	.	G	.	.	LowGQX	END=39321581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39322549	.	A	.	.	LowGQX	END=39322563	GT	./.
chr1	39322564	.	A	.	.	LowGQX	END=39322756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39325055	.	C	.	.	LowGQX	END=39325320	GT	./.
chr1	39330261	.	G	.	.	LowGQX	END=39330271	GT	./.
chr1	39330272	.	A	.	.	LowGQX	END=39330280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39330281	.	T	.	.	LowGQX	.	GT	./.
chr1	39330282	.	A	.	.	LowGQX	END=39330318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39330319	.	T	.	.	LowGQX	.	GT	./.
chr1	39330320	.	G	.	.	LowGQX	END=39330364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39330365	.	G	.	.	LowGQX	.	GT	./.
chr1	39330366	.	A	.	.	LowGQX	END=39330414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39332500	.	A	.	.	LowGQX	END=39332728	GT	./.
chr1	39333209	.	G	.	.	LowGQX	END=39333308	GT	./.
chr1	39338677	.	A	.	.	LowGQX	END=39338776	GT	./.
chr1	39338861	.	G	.	.	LowGQX	END=39339020	GT	./.
chr1	39339357	.	T	.	.	LowGQX	END=39339581	GT	./.
chr1	39340221	.	G	.	.	LowGQX	END=39341772	GT	./.
chr1	39347072	.	T	.	.	LowGQX	END=39347171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39352174	.	G	.	.	LowGQX	END=39352357	GT	./.
chr1	39353616	.	A	.	.	LowGQX	END=39353715	GT	./.
chr1	39358817	.	A	.	.	LowGQX	END=39358916	GT	./.
chr1	39361639	.	A	.	.	LowGQX	END=39361695	GT	./.
chr1	39361696	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	39361697	.	C	.	.	LowGQX	END=39361743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39376992	.	A	.	.	LowGQX	END=39377108	GT	./.
chr1	39381229	.	C	.	.	LowGQX	END=39381384	GT	./.
chr1	39384637	.	A	.	.	LowGQX	END=39385009	GT	./.
chr1	39391614	.	C	.	.	LowGQX	END=39391713	GT	./.
chr1	39395066	.	C	.	.	LowGQX	END=39395181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39456980	.	C	.	.	LowGQX	END=39457006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39457007	.	C	.	.	LowGQX	.	GT	./.
chr1	39457008	.	G	.	.	LowGQX	END=39457015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39457016	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	39457017	.	G	.	.	LowGQX	END=39457052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39457053	.	A	.	.	LowGQX	.	GT	./.
chr1	39457054	.	T	.	.	LowGQX	END=39457067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39457068	.	A	.	.	LowGQX	.	GT	./.
chr1	39457069	.	C	.	.	LowGQX	END=39457087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39457088	.	G	.	.	LowGQX	.	GT	./.
chr1	39457089	.	T	.	.	LowGQX	END=39457092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39457093	.	A	.	.	LowGQX	.	GT	./.
chr1	39457094	.	G	.	.	LowGQX	END=39457102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39457103	.	G	.	.	LowGQX	.	GT	./.
chr1	39457104	.	C	.	.	LowGQX	END=39457121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39457122	.	A	.	.	LowGQX	END=39457142	GT	./.
chr1	39457143	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39457144	.	T	.	.	LowGQX	.	GT	./.
chr1	39457145	.	G	.	.	LowGQX	END=39457164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39457165	.	T	.	.	LowGQX	.	GT	./.
chr1	39457166	.	C	.	.	LowGQX	END=39457176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39457177	.	A	.	.	LowGQX	.	GT	./.
chr1	39457178	.	C	.	.	LowGQX	END=39457270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39457271	.	G	.	.	LowGQX	.	GT	./.
chr1	39457272	.	G	.	.	LowGQX	END=39457292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39457293	.	T	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	39457294	.	T	.	.	LowGQX	END=39457339	GT	./.
chr1	39463841	.	A	.	.	LowGQX	END=39463985	GT	./.
chr1	39466642	.	A	.	.	LowGQX	END=39466754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39466755	.	A	.	.	LowGQX	END=39466780	GT	./.
chr1	39468947	.	G	.	.	LowGQX	END=39469104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39469684	.	T	.	.	LowGQX	END=39469934	GT	./.
chr1	39494346	.	C	.	.	PASS	END=39494385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	39494386	.	C	.	.	PASS	END=39494423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	39494424	.	T	.	.	PASS	END=39494453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	39494454	.	A	.	.	PASS	END=39494574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	39494575	.	A	.	.	PASS	END=39494601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	39494602	.	G	.	.	PASS	END=39494605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	39494606	.	G	.	132.30	PASS	DP=86;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:64:86:99:60:99
chr1	39494607	.	A	.	.	PASS	END=39494627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:78:60
chr1	39494628	.	A	.	84.17	PASS	DP=73;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:55:73:54.18:60:54
chr1	39494629	.	G	.	.	PASS	END=39494662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:78:60
chr1	39494663	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:75:51:60
chr1	39500013	.	T	.	.	PASS	END=39500019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	39500020	.	C	.	.	PASS	END=39500038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	39500039	.	T	.	.	PASS	END=39500158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	39500159	.	T	.	.	PASS	END=39500170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	39500171	.	A	.	.	PASS	END=39500185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	39500186	.	G	A	596.03	PASS	BaseQRankSum=0.927;DP=44;Dels=0.00;FS=1.328;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=1.749;QD=13.55;ReadPosRankSum=-0.246;SB=-228.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:22,22:44:99:626,0,589:60:99:0.500
chr1	39500187	.	T	.	.	PASS	END=39500195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	39500196	.	T	.	.	PASS	END=39500208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	39500209	.	C	.	.	PASS	END=39500219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	39549810	.	C	.	.	LowGQX	END=39549886	GT	./.
chr1	39549887	.	G	.	.	LowGQX	END=39549897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39549898	.	C	.	.	LowGQX	.	GT	./.
chr1	39549899	.	C	.	.	LowGQX	END=39549903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39549904	.	A	.	.	LowGQX	.	GT	./.
chr1	39549905	.	T	.	.	LowGQX	END=39549909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39549910	.	A	.	.	LowGQX	.	GT	./.
chr1	39549911	.	G	.	.	LowGQX	END=39549919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39549920	.	T	.	.	LowGQX	END=39549921	GT	./.
chr1	39549922	.	A	.	.	LowGQX	END=39549927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39549928	.	C	.	.	LowGQX	END=39549929	GT	./.
chr1	39549930	.	T	.	.	LowGQX	END=39549931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39549932	.	T	.	.	LowGQX	.	GT	./.
chr1	39549933	.	C	.	.	LowGQX	END=39549944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39549945	.	T	.	.	LowGQX	.	GT	./.
chr1	39549946	.	C	.	.	LowGQX	END=39549958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39549959	.	G	.	.	LowGQX	.	GT	./.
chr1	39549960	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39549961	.	G	.	.	LowGQX	END=39549962	GT	./.
chr1	39549963	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39549964	.	C	.	.	LowGQX	.	GT	./.
chr1	39549965	.	T	.	.	LowGQX	END=39549966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39549967	.	A	.	.	LowGQX	.	GT	./.
chr1	39549968	.	C	.	.	LowGQX	END=39549974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39549975	.	G	.	.	LowGQX	END=39549976	GT	./.
chr1	39549977	.	G	.	.	LowGQX	END=39549983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39549984	.	G	.	.	LowGQX	.	GT	./.
chr1	39549985	.	G	.	.	LowGQX	END=39549986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39549987	.	A	.	.	LowGQX	.	GT	./.
chr1	39549988	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39549989	.	C	.	.	LowGQX	.	GT	./.
chr1	39549990	.	C	.	.	LowGQX	END=39549992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39549993	.	T	.	.	LowGQX	END=39549994	GT	./.
chr1	39549995	.	T	.	.	LowGQX	END=39549996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39549997	.	C	.	.	LowGQX	.	GT	./.
chr1	39549998	.	C	.	.	LowGQX	END=39550005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550006	.	C	.	.	LowGQX	.	GT	./.
chr1	39550007	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550008	.	G	.	.	LowGQX	END=39550009	GT	./.
chr1	39550010	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550011	.	G	.	.	LowGQX	END=39550014	GT	./.
chr1	39550015	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39550016	.	C	.	.	LowGQX	.	GT	./.
chr1	39550017	.	T	.	.	LowGQX	END=39550021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39550022	.	C	.	.	LowGQX	.	GT	./.
chr1	39550023	.	T	.	.	LowGQX	END=39550024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39550025	.	G	.	.	LowGQX	END=39550026	GT	./.
chr1	39550027	.	A	.	.	LowGQX	END=39550030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39550031	.	G	.	.	LowGQX	.	GT	./.
chr1	39550032	.	C	.	.	LowGQX	END=39550038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550039	.	A	.	.	LowGQX	.	GT	./.
chr1	39550040	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550041	.	G	.	.	LowGQX	.	GT	./.
chr1	39550042	.	A	.	.	LowGQX	END=39550045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550046	.	G	.	.	LowGQX	END=39550047	GT	./.
chr1	39550048	.	A	.	.	LowGQX	END=39550049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550050	.	A	.	.	LowGQX	END=39550051	GT	./.
chr1	39550052	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550053	.	C	.	.	LowGQX	.	GT	./.
chr1	39550054	.	G	.	.	LowGQX	END=39550057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550058	.	A	.	.	LowGQX	END=39550060	GT	./.
chr1	39550061	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550062	.	C	.	.	LowGQX	END=39550064	GT	./.
chr1	39550065	.	G	.	.	LowGQX	END=39550066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550067	.	T	.	.	LowGQX	.	GT	./.
chr1	39550068	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550069	.	C	.	.	LowGQX	END=39550070	GT	./.
chr1	39550071	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550072	.	T	.	.	LowGQX	.	GT	./.
chr1	39550073	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550074	.	C	.	.	LowGQX	END=39550075	GT	./.
chr1	39550076	.	G	.	.	LowGQX	END=39550080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550081	.	C	.	.	LowGQX	.	GT	./.
chr1	39550082	.	T	.	.	LowGQX	END=39550084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550085	.	A	.	.	LowGQX	.	GT	./.
chr1	39550086	.	G	.	.	LowGQX	END=39550087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550088	.	G	.	.	LowGQX	END=39550090	GT	./.
chr1	39550091	.	T	.	.	LowGQX	END=39550092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550093	.	C	.	.	LowGQX	.	GT	./.
chr1	39550094	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550095	.	G	.	.	LowGQX	.	GT	./.
chr1	39550096	.	T	.	.	LowGQX	END=39550104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550105	.	T	.	.	LowGQX	.	GT	./.
chr1	39550106	.	C	.	.	LowGQX	END=39550110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39550111	.	G	.	.	LowGQX	END=39550112	GT	./.
chr1	39568374	.	G	.	.	LowGQX	END=39568722	GT	./.
chr1	39571233	.	C	.	.	LowGQX	END=39571392	GT	./.
chr1	39670694	.	A	.	.	LowGQX	END=39670726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	39670727	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	39670728	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	39670729	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	39670730	.	C	.	.	LowGQX	END=39670747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	39670748	.	C	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr1	39670749	.	G	.	.	LowGQX	END=39670792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39670793	.	A	.	.	LowGQX	.	GT	./.
chr1	39670794	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39670795	.	G	.	.	LowGQX	.	GT	./.
chr1	39670796	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39670797	.	A	.	.	LowGQX	.	GT	./.
chr1	39670798	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39670799	.	A	.	.	LowGQX	.	GT	./.
chr1	39670800	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39670801	.	C	.	.	LowGQX	.	GT	./.
chr1	39670802	.	A	.	.	LowGQX	END=39670803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39696835	.	C	.	.	PASS	END=39696869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:66:60
chr1	39696870	.	T	.	.	PASS	END=39696871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:60:60
chr1	39696872	.	A	.	.	PASS	END=39696922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:60
chr1	39696923	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:44:60
chr1	39696924	.	C	.	.	PASS	END=39696933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	39696934	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:57:60
chr1	39715681	.	C	.	.	LowGQX	END=39715780	GT	./.
chr1	39717516	.	A	.	.	LowGQX	END=39717544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39717545	.	C	.	.	LowGQX	.	GT	./.
chr1	39717546	.	T	.	.	LowGQX	END=39717565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39717566	.	T	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	39717567	.	G	.	.	LowGQX	END=39717574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39717575	.	A	.	.	LowGQX	.	GT	./.
chr1	39717576	.	A	.	.	LowGQX	END=39717600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39717601	.	T	.	.	LowGQX	.	GT	./.
chr1	39717602	.	G	.	.	LowGQX	END=39717615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39719959	.	T	.	.	LowGQX	END=39720058	GT	./.
chr1	39723605	.	C	.	.	LowGQX	END=39723706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39723707	.	C	.	.	LowGQX	END=39723755	GT	./.
chr1	39734369	.	A	.	.	LowGQX	END=39734648	GT	./.
chr1	39734649	.	G	.	.	LowGQX	END=39734894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39734895	.	G	.	.	LowGQX	.	GT	./.
chr1	39734896	.	C	.	.	LowGQX	END=39734938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39734939	.	A	.	.	LowGQX	END=39734976	GT	./.
chr1	39734977	.	G	.	.	LowGQX	END=39734993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39734994	.	G	.	.	LowGQX	.	GT	./.
chr1	39734995	.	A	.	.	LowGQX	END=39735021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39735022	.	A	.	.	LowGQX	.	GT	./.
chr1	39735023	.	G	.	.	LowGQX	END=39735024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39735025	.	G	.	.	LowGQX	.	GT	./.
chr1	39735026	.	C	.	.	LowGQX	END=39735177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39735178	.	A	.	.	LowGQX	END=39735188	GT	./.
chr1	39735189	.	C	.	.	LowGQX	END=39735191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39735192	.	A	.	.	LowGQX	.	GT	./.
chr1	39735193	.	C	.	.	LowGQX	END=39735201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39735202	.	G	.	.	LowGQX	.	GT	./.
chr1	39735203	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39735204	.	G	.	.	LowGQX	.	GT	./.
chr1	39735205	.	A	.	.	LowGQX	END=39735215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39735216	.	A	.	.	LowGQX	.	GT	./.
chr1	39735217	.	G	.	.	LowGQX	END=39735219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39735220	.	G	.	.	LowGQX	.	GT	./.
chr1	39735221	.	T	.	.	LowGQX	END=39735227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39735228	.	G	.	.	LowGQX	.	GT	./.
chr1	39735229	.	T	.	.	LowGQX	END=39735259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39735260	.	C	.	.	LowGQX	.	GT	./.
chr1	39735261	.	A	.	.	LowGQX	END=39735267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39735268	.	G	.	.	LowGQX	END=39735269	GT	./.
chr1	39735270	.	C	.	.	LowGQX	END=39735286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39735287	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	39735288	.	C	.	.	LowGQX	END=39735289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39735290	.	G	.	.	LowGQX	.	GT	./.
chr1	39735291	.	C	.	.	LowGQX	END=39735293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39735294	.	A	.	.	LowGQX	.	GT	./.
chr1	39735295	.	A	.	.	LowGQX	END=39735313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39735314	.	G	.	.	LowGQX	END=39735315	GT	./.
chr1	39735316	.	G	.	.	LowGQX	END=39735330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39735331	.	C	.	.	LowGQX	.	GT	./.
chr1	39735332	.	A	.	.	LowGQX	END=39735333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39735334	.	A	.	.	LowGQX	END=39735335	GT	./.
chr1	39735336	.	G	.	.	LowGQX	END=39735337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39735338	.	G	.	.	LowGQX	.	GT	./.
chr1	39735339	.	G	.	.	LowGQX	END=39735346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39735347	.	T	.	.	LowGQX	END=39735348	GT	./.
chr1	39735349	.	T	.	.	LowGQX	END=39735362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39735363	.	A	.	.	LowGQX	.	GT	./.
chr1	39735364	.	G	.	.	LowGQX	END=39735380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39735381	.	G	.	.	LowGQX	END=39735392	GT	./.
chr1	39747878	.	A	.	.	LowGQX	END=39748050	GT	./.
chr1	39748859	.	A	.	.	LowGQX	END=39748860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39748861	.	A	.	.	LowGQX	.	GT	./.
chr1	39748862	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39748863	.	C	.	.	LowGQX	.	GT	./.
chr1	39748864	.	C	.	.	LowGQX	END=39748866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39748867	.	T	.	.	LowGQX	END=39748868	GT	./.
chr1	39748869	.	T	.	.	LowGQX	END=39748877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39748878	.	T	.	.	LowGQX	.	GT	./.
chr1	39748879	.	G	.	.	LowGQX	END=39748880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39748881	.	A	.	.	LowGQX	.	GT	./.
chr1	39748882	.	G	.	.	LowGQX	END=39748883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39748884	.	G	.	.	LowGQX	.	GT	./.
chr1	39748885	.	G	.	.	LowGQX	END=39748886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39748887	.	T	.	.	LowGQX	END=39748888	GT	./.
chr1	39748889	.	C	.	.	LowGQX	END=39748903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39748904	.	C	.	.	LowGQX	.	GT	./.
chr1	39748905	.	G	.	.	LowGQX	END=39748911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39748912	.	T	.	.	LowGQX	.	GT	./.
chr1	39748913	.	C	.	.	LowGQX	END=39748914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39748915	.	G	.	.	LowGQX	.	GT	./.
chr1	39748916	.	G	.	.	LowGQX	END=39748920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39748921	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	39748922	.	G	.	.	LowGQX	END=39748932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39748933	.	G	.	.	LowGQX	END=39748935	GT	./.
chr1	39748936	.	A	.	.	LowGQX	END=39748949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39748950	.	T	.	.	LowGQX	.	GT	./.
chr1	39748951	.	C	.	.	LowGQX	END=39748954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39748955	.	C	.	.	LowGQX	END=39748975	GT	./.
chr1	39749079	.	A	.	.	LowGQX	END=39749189	GT	./.
chr1	39749736	.	A	.	.	LowGQX	END=39749782	GT	./.
chr1	39749783	.	C	.	.	LowGQX	END=39749789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39749790	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	39749791	.	C	.	.	LowGQX	END=39749796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39749797	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	39749798	.	A	.	.	LowGQX	END=39749817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39749818	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	39749819	.	T	.	.	LowGQX	END=39749859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39750003	.	A	.	.	LowGQX	END=39750102	GT	./.
chr1	39750753	.	A	.	.	LowGQX	END=39750812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39750813	.	A	.	.	LowGQX	END=39750884	GT	./.
chr1	39750966	.	C	.	.	LowGQX	END=39751065	GT	./.
chr1	39751274	.	A	.	.	LowGQX	END=39751432	GT	./.
chr1	39752956	.	A	.	.	LowGQX	END=39753236	GT	./.
chr1	39757580	.	A	.	.	LowGQX	END=39757712	GT	./.
chr1	39758427	.	T	.	.	LowGQX	END=39758526	GT	./.
chr1	39759128	.	A	.	.	LowGQX	END=39759293	GT	./.
chr1	39760716	.	A	.	.	LowGQX	END=39760824	GT	./.
chr1	39761457	.	A	.	.	LowGQX	END=39761556	GT	./.
chr1	39763290	.	A	.	.	LowGQX	END=39763419	GT	./.
chr1	39764282	.	T	.	.	LowGQX	END=39764381	GT	./.
chr1	39764877	.	C	.	.	LowGQX	END=39764976	GT	./.
chr1	39765880	.	A	.	.	LowGQX	END=39766036	GT	./.
chr1	39768594	.	A	.	.	LowGQX	END=39768752	GT	./.
chr1	39775240	.	A	.	.	LowGQX	END=39775370	GT	./.
chr1	39775915	.	A	.	.	LowGQX	END=39776102	GT	./.
chr1	39776501	.	A	.	.	LowGQX	END=39776614	GT	./.
chr1	39776615	.	C	.	.	LowGQX	END=39776647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39776648	.	T	.	.	LowGQX	.	GT	./.
chr1	39776649	.	G	.	.	LowGQX	END=39776674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39781183	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39781184	.	G	.	.	LowGQX	END=39781365	GT	./.
chr1	39782061	.	A	.	.	LowGQX	END=39782203	GT	./.
chr1	39782874	.	A	.	.	LowGQX	END=39783081	GT	./.
chr1	39784123	.	A	.	.	LowGQX	END=39784289	GT	./.
chr1	39785328	.	C	.	.	LowGQX	END=39785330	GT	./.
chr1	39785331	.	C	.	.	LowGQX	END=39785427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39788278	.	A	.	.	LowGQX	END=39788389	GT	./.
chr1	39788580	.	A	.	.	LowGQX	END=39788682	GT	./.
chr1	39789863	.	A	.	.	LowGQX	END=39790019	GT	./.
chr1	39790313	.	T	.	.	LowGQX	END=39790412	GT	./.
chr1	39792888	.	A	.	.	LowGQX	.	GT	./.
chr1	39792889	.	G	.	.	LowGQX	END=39792891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39792892	.	T	.	.	LowGQX	.	GT	./.
chr1	39792893	.	C	.	.	LowGQX	END=39792900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39792901	.	A	.	.	LowGQX	.	GT	./.
chr1	39792902	.	A	.	.	LowGQX	END=39792907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39792908	.	G	.	.	LowGQX	END=39792910	GT	./.
chr1	39792911	.	A	.	.	LowGQX	END=39792920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39792921	.	G	.	.	LowGQX	.	GT	./.
chr1	39792922	.	A	.	.	LowGQX	END=39792923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39792924	.	C	.	.	LowGQX	.	GT	./.
chr1	39792925	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39792926	.	A	.	.	LowGQX	END=39793027	GT	./.
chr1	39796874	.	G	.	.	LowGQX	END=39796881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39796882	.	G	.	.	LowGQX	.	GT	./.
chr1	39796883	.	A	.	.	LowGQX	END=39796894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39796895	.	G	.	.	LowGQX	.	GT	./.
chr1	39796896	.	G	.	.	LowGQX	END=39796898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39796899	.	A	.	.	LowGQX	.	GT	./.
chr1	39796900	.	T	.	.	LowGQX	END=39796922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39796923	.	T	.	.	LowGQX	END=39796943	GT	./.
chr1	39796944	.	C	.	.	LowGQX	END=39796959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39796960	.	A	.	.	LowGQX	.	GT	./.
chr1	39796961	.	C	.	.	LowGQX	END=39796969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39796970	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	39796971	.	G	.	.	LowGQX	END=39797092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39797093	.	G	.	.	LowGQX	END=39797094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	39797095	.	T	.	4.69	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.01:60:0
chr1	39797096	.	C	.	.	LowGQX	END=39797102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	39797103	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	39797104	.	T	.	.	LowGQX	END=39797112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	39797113	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	39797114	.	C	.	.	LowGQX	END=39797118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	39797119	.	C	.	4.69	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.01:60:0
chr1	39797120	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	39797121	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	39797122	.	T	.	.	LowGQX	END=39797139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39797140	.	A	.	.	LowGQX	.	GT	./.
chr1	39797141	.	G	.	.	LowGQX	END=39797145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797146	.	G	.	.	LowGQX	END=39797147	GT	./.
chr1	39797148	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797149	.	G	.	.	LowGQX	END=39797150	GT	./.
chr1	39797151	.	C	.	.	LowGQX	END=39797152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797153	.	T	.	.	LowGQX	END=39797155	GT	./.
chr1	39797156	.	T	.	.	LowGQX	END=39797157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797158	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	39797159	.	T	.	.	LowGQX	END=39797166	GT	./.
chr1	39797167	.	A	.	.	LowGQX	END=39797172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797173	.	T	.	.	LowGQX	END=39797176	GT	./.
chr1	39797177	.	A	.	.	LowGQX	END=39797181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39797182	.	G	.	.	LowGQX	END=39797186	GT	./.
chr1	39797187	.	A	.	.	LowGQX	END=39797195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797196	.	A	.	.	LowGQX	END=39797199	GT	./.
chr1	39797200	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797201	.	T	.	.	LowGQX	.	GT	./.
chr1	39797202	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797203	.	G	.	.	LowGQX	.	GT	./.
chr1	39797204	.	A	.	.	LowGQX	END=39797205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797206	.	T	.	.	LowGQX	END=39797207	GT	./.
chr1	39797208	.	A	.	.	LowGQX	END=39797209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797210	.	A	.	.	LowGQX	.	GT	./.
chr1	39797211	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797212	.	T	.	.	LowGQX	.	GT	./.
chr1	39797213	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797214	.	T	.	.	LowGQX	END=39797215	GT	./.
chr1	39797216	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797217	.	G	.	.	LowGQX	.	GT	./.
chr1	39797218	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797219	.	A	.	.	LowGQX	.	GT	./.
chr1	39797220	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797221	.	C	.	.	LowGQX	.	GT	./.
chr1	39797222	.	T	.	.	LowGQX	END=39797223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797224	.	A	.	.	LowGQX	END=39797225	GT	./.
chr1	39797226	.	C	.	.	LowGQX	END=39797229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797230	.	C	.	.	LowGQX	.	GT	./.
chr1	39797231	.	A	.	.	LowGQX	END=39797234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797235	.	G	.	.	LowGQX	END=39797237	GT	./.
chr1	39797238	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797239	.	G	.	.	LowGQX	.	GT	./.
chr1	39797240	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797241	.	T	.	.	LowGQX	.	GT	./.
chr1	39797242	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797243	.	C	.	.	LowGQX	END=39797244	GT	./.
chr1	39797245	.	G	.	.	LowGQX	END=39797250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797251	.	C	.	.	LowGQX	END=39797254	GT	./.
chr1	39797255	.	T	.	.	LowGQX	END=39797257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797258	.	T	.	.	LowGQX	END=39797259	GT	./.
chr1	39797260	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797261	.	G	.	.	LowGQX	.	GT	./.
chr1	39797262	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	39797263	.	A	.	.	LowGQX	END=39797264	GT	./.
chr1	39797265	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797266	.	G	.	.	LowGQX	.	GT	./.
chr1	39797267	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797268	.	A	.	.	LowGQX	.	GT	./.
chr1	39797269	.	T	.	.	LowGQX	END=39797274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797275	.	T	.	.	LowGQX	END=39797661	GT	./.
chr1	39797662	.	G	.	.	LowGQX	END=39797693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797694	.	G	.	.	LowGQX	.	GT	./.
chr1	39797695	.	G	.	.	LowGQX	END=39797755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797756	.	A	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	39797757	.	G	.	.	LowGQX	END=39797816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797817	.	T	.	.	LowGQX	.	GT	./.
chr1	39797818	.	G	.	.	LowGQX	END=39797831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797832	.	G	.	.	LowGQX	.	GT	./.
chr1	39797833	.	A	.	.	LowGQX	END=39797835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797836	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	39797837	.	C	.	.	LowGQX	END=39797850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797851	.	A	.	.	LowGQX	END=39797852	GT	./.
chr1	39797853	.	G	.	.	LowGQX	END=39797862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39797863	.	A	.	.	LowGQX	END=39798026	GT	./.
chr1	39798027	.	C	.	.	LowGQX	END=39798178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798179	.	T	.	.	LowGQX	END=39798349	GT	./.
chr1	39798350	.	T	.	.	LowGQX	END=39798370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798371	.	G	.	.	LowGQX	.	GT	./.
chr1	39798372	.	A	.	.	LowGQX	END=39798401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798402	.	A	.	.	LowGQX	.	GT	./.
chr1	39798403	.	A	.	.	LowGQX	END=39798425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798426	.	G	.	.	LowGQX	.	GT	./.
chr1	39798427	.	A	.	.	LowGQX	END=39798436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798437	.	A	.	.	LowGQX	END=39798438	GT	./.
chr1	39798439	.	A	.	.	LowGQX	END=39798444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798445	.	G	.	.	LowGQX	.	GT	./.
chr1	39798446	.	C	.	.	LowGQX	END=39798452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798453	.	A	.	.	LowGQX	.	GT	./.
chr1	39798454	.	C	.	.	LowGQX	END=39798471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798472	.	A	.	.	LowGQX	.	GT	./.
chr1	39798473	.	T	.	.	LowGQX	END=39798479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798480	.	G	.	.	LowGQX	.	GT	./.
chr1	39798481	.	T	.	.	LowGQX	END=39798485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798486	.	A	.	.	LowGQX	.	GT	./.
chr1	39798487	.	A	.	.	LowGQX	END=39798498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798499	.	A	.	.	LowGQX	.	GT	./.
chr1	39798500	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798501	.	C	.	.	LowGQX	END=39798510	GT	./.
chr1	39798511	.	A	.	.	LowGQX	END=39798513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798514	.	A	.	.	LowGQX	.	GT	./.
chr1	39798515	.	A	.	.	LowGQX	END=39798543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798544	.	T	.	.	LowGQX	.	GT	./.
chr1	39798545	.	G	.	.	LowGQX	END=39798554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798555	.	A	.	.	LowGQX	.	GT	./.
chr1	39798556	.	A	.	.	LowGQX	END=39798586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798587	.	G	.	.	LowGQX	.	GT	./.
chr1	39798588	.	A	.	.	LowGQX	END=39798594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798595	.	C	.	.	LowGQX	.	GT	./.
chr1	39798596	.	C	.	.	LowGQX	END=39798616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798617	.	A	.	.	LowGQX	.	GT	./.
chr1	39798618	.	G	.	.	LowGQX	END=39798620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798621	.	T	.	.	LowGQX	.	GT	./.
chr1	39798622	.	C	.	.	LowGQX	END=39798629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798630	.	G	.	.	LowGQX	.	GT	./.
chr1	39798631	.	A	.	.	LowGQX	END=39798661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39798662	.	A	.	.	LowGQX	END=39799567	GT	./.
chr1	39799568	.	G	.	.	LowGQX	END=39799575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39799576	.	T	.	.	LowGQX	.	GT	./.
chr1	39799577	.	T	.	.	LowGQX	END=39799616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39799617	.	A	.	.	LowGQX	.	GT	./.
chr1	39799618	.	A	.	.	LowGQX	END=39799625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39799626	.	A	.	.	LowGQX	.	GT	./.
chr1	39799627	.	G	.	.	LowGQX	END=39799628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39799629	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	39799630	.	A	.	.	LowGQX	END=39799642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39799643	.	T	.	.	LowGQX	.	GT	./.
chr1	39799644	.	T	.	.	LowGQX	END=39799647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39799648	.	A	.	.	LowGQX	.	GT	./.
chr1	39799649	.	A	.	.	LowGQX	END=39799688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39799689	.	C	.	.	LowGQX	.	GT	./.
chr1	39799690	.	C	.	.	LowGQX	END=39799699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39799700	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	39799701	.	G	.	.	LowGQX	END=39799719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39799720	.	G	.	.	LowGQX	.	GT	./.
chr1	39799721	.	T	.	.	LowGQX	END=39799726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39799727	.	G	.	.	LowGQX	.	GT	./.
chr1	39799728	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39799729	.	A	.	.	LowGQX	END=39800186	GT	./.
chr1	39800187	.	G	.	.	LowGQX	END=39800188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800189	.	A	.	.	LowGQX	.	GT	./.
chr1	39800190	.	C	.	.	LowGQX	END=39800200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800201	.	A	.	.	LowGQX	.	GT	./.
chr1	39800202	.	G	.	.	LowGQX	END=39800210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800211	.	C	.	.	LowGQX	.	GT	./.
chr1	39800212	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800213	.	C	.	.	LowGQX	END=39800214	GT	./.
chr1	39800215	.	T	.	.	LowGQX	END=39800222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800223	.	A	.	.	LowGQX	.	GT	./.
chr1	39800224	.	T	.	.	LowGQX	END=39800225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800226	.	A	.	.	LowGQX	.	GT	./.
chr1	39800227	.	A	.	.	LowGQX	END=39800239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800240	.	C	.	.	LowGQX	.	GT	./.
chr1	39800241	.	G	.	.	LowGQX	END=39800242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800243	.	C	.	.	LowGQX	END=39800244	GT	./.
chr1	39800245	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800246	.	A	.	.	LowGQX	.	GT	./.
chr1	39800247	.	G	.	.	LowGQX	END=39800250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800251	.	T	.	.	LowGQX	END=39800252	GT	./.
chr1	39800253	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800254	.	C	.	.	LowGQX	.	GT	./.
chr1	39800255	.	A	.	.	LowGQX	END=39800261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800262	.	C	.	.	LowGQX	END=39800263	GT	./.
chr1	39800264	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800265	.	G	.	.	LowGQX	END=39800266	GT	./.
chr1	39800267	.	A	.	.	LowGQX	END=39800279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800280	.	A	.	.	LowGQX	.	GT	./.
chr1	39800281	.	A	.	.	LowGQX	END=39800286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800287	.	A	.	.	LowGQX	.	GT	./.
chr1	39800288	.	C	.	.	LowGQX	END=39800292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800293	.	C	.	.	LowGQX	END=39800297	GT	./.
chr1	39800298	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800299	.	C	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	39800300	.	G	.	.	LowGQX	.	GT	./.
chr1	39800301	.	C	.	.	LowGQX	END=39800312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800313	.	G	.	.	LowGQX	.	GT	./.
chr1	39800314	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800315	.	A	.	.	LowGQX	.	GT	./.
chr1	39800316	.	G	.	.	LowGQX	END=39800317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800318	.	C	.	.	LowGQX	.	GT	./.
chr1	39800319	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800320	.	A	.	.	LowGQX	.	GT	./.
chr1	39800321	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800322	.	G	.	.	LowGQX	END=39800324	GT	./.
chr1	39800325	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800326	.	A	.	.	LowGQX	.	GT	./.
chr1	39800327	.	T	.	.	LowGQX	END=39800335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800336	.	A	.	.	LowGQX	END=39800357	GT	./.
chr1	39800358	.	A	.	.	LowGQX	END=39800398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800399	.	G	.	.	LowGQX	.	GT	./.
chr1	39800400	.	G	.	.	LowGQX	END=39800408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800409	.	A	.	.	LowGQX	.	GT	./.
chr1	39800410	.	T	.	.	LowGQX	END=39800412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800413	.	T	.	.	LowGQX	.	GT	./.
chr1	39800414	.	C	.	.	LowGQX	END=39800508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39800509	.	T	.	.	LowGQX	END=39802327	GT	./.
chr1	39802852	.	A	.	.	LowGQX	END=39803005	GT	./.
chr1	39806172	.	A	.	.	LowGQX	END=39806391	GT	./.
chr1	39806474	.	A	.	.	LowGQX	END=39806610	GT	./.
chr1	39806611	.	C	.	.	LowGQX	END=39806613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39806614	.	C	.	.	LowGQX	END=39806615	GT	./.
chr1	39806616	.	A	.	.	LowGQX	END=39806627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39812577	.	T	.	.	LowGQX	END=39812718	GT	./.
chr1	39812719	.	T	.	.	LowGQX	END=39812772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39812773	.	T	.	.	LowGQX	.	GT	./.
chr1	39812774	.	T	.	.	LowGQX	END=39812821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39812822	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	39812823	.	G	.	.	LowGQX	END=39812946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39815148	.	A	.	.	LowGQX	END=39815152	GT	./.
chr1	39815153	.	C	.	.	LowGQX	END=39815301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39816455	.	A	.	.	LowGQX	END=39816692	GT	./.
chr1	39818677	.	A	.	.	LowGQX	END=39818854	GT	./.
chr1	39818855	.	G	.	.	LowGQX	END=39818858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39818859	.	A	.	.	LowGQX	.	GT	./.
chr1	39818860	.	A	.	.	LowGQX	END=39818869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39818870	.	A	.	.	LowGQX	.	GT	./.
chr1	39818871	.	G	.	.	LowGQX	END=39818880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39818881	.	A	.	.	LowGQX	.	GT	./.
chr1	39818882	.	C	.	.	LowGQX	END=39818905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39823045	.	A	.	.	LowGQX	END=39823567	GT	./.
chr1	39824337	.	T	.	.	LowGQX	END=39824350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39824351	.	T	.	.	LowGQX	.	GT	./.
chr1	39824352	.	T	.	.	LowGQX	END=39824357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39824358	.	C	.	.	LowGQX	.	GT	./.
chr1	39824359	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39824360	.	C	.	.	LowGQX	.	GT	./.
chr1	39824361	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39824362	.	G	.	.	LowGQX	.	GT	./.
chr1	39824363	.	G	.	.	LowGQX	END=39824379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39824380	.	A	.	.	LowGQX	END=39824424	GT	./.
chr1	39824425	.	A	.	.	LowGQX	END=39824528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39824529	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	39824530	.	G	.	.	LowGQX	END=39824546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	39824547	.	T	.	.	LowGQX	.	GT	./.
chr1	39824811	.	A	.	.	LowGQX	.	GT	./.
chr1	39824812	.	G	.	.	LowGQX	END=39824814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39824815	.	G	.	.	LowGQX	END=39824816	GT	./.
chr1	39824817	.	T	.	.	LowGQX	END=39824846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39824847	.	C	.	.	LowGQX	.	GT	./.
chr1	39824848	.	T	.	.	LowGQX	END=39824856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39824857	.	A	.	.	LowGQX	.	GT	./.
chr1	39824858	.	C	.	.	LowGQX	END=39824866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39824867	.	G	.	.	LowGQX	.	GT	./.
chr1	39824868	.	T	.	.	LowGQX	END=39824871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39824872	.	T	.	.	LowGQX	.	GT	./.
chr1	39824873	.	C	.	.	LowGQX	END=39824881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39824882	.	A	.	.	LowGQX	.	GT	./.
chr1	39824883	.	T	.	.	LowGQX	END=39824895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39824896	.	G	.	.	LowGQX	END=39824897	GT	./.
chr1	39824898	.	A	.	.	LowGQX	END=39824901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39824902	.	A	.	.	LowGQX	.	GT	./.
chr1	39824903	.	G	.	.	LowGQX	END=39824911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39824912	.	C	.	.	LowGQX	END=39824938	GT	./.
chr1	39826463	.	A	.	.	LowGQX	END=39826675	GT	./.
chr1	39827030	.	A	.	.	LowGQX	END=39827249	GT	./.
chr1	39827250	.	C	.	.	LowGQX	END=39827351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39833818	.	A	.	.	LowGQX	END=39833988	GT	./.
chr1	39835700	.	A	.	.	LowGQX	END=39835761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39835762	.	C	.	.	LowGQX	END=39835860	GT	./.
chr1	39838149	.	A	.	.	LowGQX	END=39838153	GT	./.
chr1	39838154	.	C	.	.	LowGQX	END=39838328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39844115	.	C	.	.	LowGQX	END=39844214	GT	./.
chr1	39844873	.	A	.	.	LowGQX	END=39845013	GT	./.
chr1	39845014	.	G	.	.	LowGQX	END=39845081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39845082	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	39845083	.	A	.	.	LowGQX	END=39845118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39845874	.	C	.	.	LowGQX	END=39846047	GT	./.
chr1	39847623	.	A	.	.	LowGQX	END=39847826	GT	./.
chr1	39851104	.	A	.	.	LowGQX	END=39851110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39851111	.	G	.	.	LowGQX	END=39851112	GT	./.
chr1	39851113	.	T	.	.	LowGQX	END=39851114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39851115	.	A	.	.	LowGQX	.	GT	./.
chr1	39851116	.	A	.	.	LowGQX	END=39851119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39851120	.	A	.	.	LowGQX	.	GT	./.
chr1	39851121	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39851122	.	T	.	.	LowGQX	.	GT	./.
chr1	39851123	.	T	.	.	LowGQX	END=39851126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39851127	.	G	.	.	LowGQX	.	GT	./.
chr1	39851128	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39851129	.	A	.	.	LowGQX	END=39851130	GT	./.
chr1	39851131	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39851132	.	C	.	.	LowGQX	.	GT	./.
chr1	39851133	.	A	.	.	LowGQX	END=39851137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39851138	.	A	.	.	LowGQX	END=39851139	GT	./.
chr1	39851140	.	A	.	.	LowGQX	END=39851147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39851148	.	C	.	.	LowGQX	.	GT	./.
chr1	39851149	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39851150	.	A	.	.	LowGQX	.	GT	./.
chr1	39851151	.	C	.	.	LowGQX	END=39851168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39851169	.	G	.	.	LowGQX	.	GT	./.
chr1	39851170	.	G	.	.	LowGQX	END=39851171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39851172	.	A	.	.	LowGQX	END=39851421	GT	./.
chr1	39851422	.	A	.	.	LowGQX	END=39851520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39851521	.	G	T	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	39851522	.	T	.	.	LowGQX	END=39851573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39851574	.	C	.	.	LowGQX	.	GT	./.
chr1	39851575	.	C	.	.	LowGQX	END=39851580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39851581	.	A	.	.	LowGQX	.	GT	./.
chr1	39851582	.	A	.	.	LowGQX	END=39851592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39851593	.	A	.	.	LowGQX	.	GT	./.
chr1	39851594	.	C	.	.	LowGQX	END=39851596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39851597	.	T	.	.	LowGQX	.	GT	./.
chr1	39851598	.	G	.	.	LowGQX	END=39851603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39852857	.	A	.	.	LowGQX	END=39853019	GT	./.
chr1	39853020	.	A	.	.	LowGQX	END=39853023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39853024	.	A	.	.	LowGQX	END=39853026	GT	./.
chr1	39853027	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39853028	.	G	.	.	LowGQX	END=39853030	GT	./.
chr1	39853031	.	T	.	.	LowGQX	END=39853062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39853063	.	A	.	.	LowGQX	.	GT	./.
chr1	39853064	.	T	.	.	LowGQX	END=39853065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39853066	.	A	.	.	LowGQX	.	GT	./.
chr1	39853067	.	G	.	.	LowGQX	END=39853068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39853069	.	T	.	.	LowGQX	.	GT	./.
chr1	39853070	.	G	.	.	LowGQX	END=39853077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39853078	.	C	.	.	LowGQX	.	GT	./.
chr1	39853079	.	T	.	.	LowGQX	END=39853099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39853100	.	T	.	.	LowGQX	.	GT	./.
chr1	39853101	.	T	.	.	LowGQX	END=39853113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39853114	.	G	.	.	LowGQX	.	GT	./.
chr1	39853115	.	A	.	.	LowGQX	END=39853116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39853117	.	A	.	.	LowGQX	.	GT	./.
chr1	39853118	.	A	.	.	LowGQX	END=39853119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39853120	.	A	.	.	LowGQX	.	GT	./.
chr1	39853121	.	G	.	.	LowGQX	END=39853123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39853124	.	A	.	.	LowGQX	.	GT	./.
chr1	39853125	.	A	.	.	LowGQX	END=39853130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39853131	.	C	.	.	LowGQX	.	GT	./.
chr1	39853132	.	T	.	.	LowGQX	END=39853143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39853144	.	T	.	.	LowGQX	.	GT	./.
chr1	39853145	.	G	.	.	LowGQX	END=39853147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39853148	.	T	.	.	LowGQX	.	GT	./.
chr1	39853149	.	G	.	.	LowGQX	END=39853150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39853151	.	G	.	.	LowGQX	.	GT	./.
chr1	39853152	.	C	.	.	LowGQX	END=39853158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39853159	.	A	.	.	LowGQX	END=39853160	GT	./.
chr1	39853161	.	C	.	.	LowGQX	END=39853168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39853169	.	A	.	.	LowGQX	END=39854272	GT	./.
chr1	39854273	.	C	.	.	LowGQX	END=39854332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39875937	.	G	.	.	LowGQX	END=39876190	GT	./.
chr1	39876191	.	C	.	.	LowGQX	END=39876395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39876396	.	T	.	.	LowGQX	END=39878827	GT	./.
chr1	39878828	.	T	.	.	LowGQX	END=39878860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39878861	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	39878862	.	C	.	.	LowGQX	END=39878897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39878898	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	39878899	.	G	.	.	LowGQX	END=39878919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39878920	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	39878921	.	C	.	.	LowGQX	END=39878929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39878930	.	A	.	.	LowGQX	.	GT	./.
chr1	39878931	.	G	.	.	LowGQX	END=39878976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39878977	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	39878978	.	C	.	.	LowGQX	END=39878993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39878994	.	A	.	.	LowGQX	END=39879001	GT	./.
chr1	39879002	.	C	.	.	LowGQX	END=39879013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	39879014	.	C	.	.	LowGQX	.	GT	./.
chr1	39879015	.	C	.	.	LowGQX	END=39879019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	39879020	.	C	.	.	LowGQX	.	GT	./.
chr1	39879021	.	C	.	.	LowGQX	END=39879024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	39879025	.	G	.	.	LowGQX	.	GT	./.
chr1	39879026	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:21
chr1	39879027	.	T	.	.	LowGQX	.	GT	./.
chr1	39879028	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:21
chr1	39879029	.	C	.	.	LowGQX	.	GT	./.
chr1	39879030	.	T	.	.	LowGQX	END=39879033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	39879034	.	G	.	.	LowGQX	END=39879035	GT	./.
chr1	39879036	.	G	.	.	LowGQX	END=39879038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	39879039	.	C	.	.	LowGQX	END=39879040	GT	./.
chr1	39879041	.	C	.	.	LowGQX	END=39879043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:21
chr1	39879044	.	C	.	.	LowGQX	END=39879230	GT	./.
chr1	39879231	.	G	.	.	LowGQX;LowMQ	END=39879276	GT	./.
chr1	39879277	.	C	.	.	LowGQX	END=39879802	GT	./.
chr1	39879803	.	A	.	.	LowGQX	END=39879879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39879880	.	A	.	.	LowGQX	.	GT	./.
chr1	39879881	.	C	.	.	LowGQX	END=39879897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39879898	.	A	.	.	LowGQX	.	GT	./.
chr1	39879899	.	T	.	.	LowGQX	END=39879902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39879903	.	A	.	.	LowGQX	.	GT	./.
chr1	39879904	.	G	.	.	LowGQX	END=39879948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39879949	.	C	.	.	LowGQX	.	GT	./.
chr1	39879950	.	C	.	.	LowGQX	END=39879951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39879952	.	T	.	.	LowGQX	.	GT	./.
chr1	39879953	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39879954	.	C	.	.	LowGQX	END=39880073	GT	./.
chr1	39880074	.	C	.	.	LowGQX	END=39880084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39880085	.	T	.	.	LowGQX	END=39880086	GT	./.
chr1	39880087	.	A	.	.	LowGQX	END=39880115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39880116	.	T	.	.	LowGQX	.	GT	./.
chr1	39880117	.	C	.	.	LowGQX	END=39880121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39880122	.	T	.	.	LowGQX	.	GT	./.
chr1	39880123	.	G	.	.	LowGQX	END=39880156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39880157	.	T	.	.	LowGQX	.	GT	./.
chr1	39880158	.	C	.	.	LowGQX	END=39880221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39888044	.	A	.	.	LowGQX	END=39888209	GT	./.
chr1	39888400	.	A	.	.	LowGQX	END=39888574	GT	./.
chr1	39889698	.	A	.	.	LowGQX	END=39889748	GT	./.
chr1	39889749	.	A	.	.	LowGQX	END=39889809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39889810	.	A	.	.	LowGQX	.	GT	./.
chr1	39889811	.	C	.	.	LowGQX	END=39889868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39893125	.	A	.	.	LowGQX	END=39893143	GT	./.
chr1	39893144	.	A	.	.	LowGQX	END=39893146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39893147	.	T	.	.	LowGQX	.	GT	./.
chr1	39893148	.	C	.	.	LowGQX	END=39893151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39893152	.	G	.	.	LowGQX	.	GT	./.
chr1	39893153	.	T	.	.	LowGQX	END=39893156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39893157	.	G	.	.	LowGQX	END=39893158	GT	./.
chr1	39893159	.	C	.	.	LowGQX	END=39893180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39893181	.	T	.	.	LowGQX	.	GT	./.
chr1	39893182	.	G	.	.	LowGQX	END=39893196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39893197	.	T	.	.	LowGQX	.	GT	./.
chr1	39893198	.	T	.	.	LowGQX	END=39893210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39893211	.	A	.	.	LowGQX	.	GT	./.
chr1	39893212	.	G	.	.	LowGQX	END=39893288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39893631	.	A	.	.	LowGQX	END=39893961	GT	./.
chr1	39894907	.	C	.	.	LowGQX	END=39895006	GT	./.
chr1	39895497	.	A	.	.	LowGQX	END=39895553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39895554	.	A	.	.	LowGQX	END=39895742	GT	./.
chr1	39896372	.	A	.	.	LowGQX	END=39896582	GT	./.
chr1	39898205	.	A	.	.	LowGQX	END=39898328	GT	./.
chr1	39898718	.	A	.	.	LowGQX	END=39898829	GT	./.
chr1	39900084	.	A	.	.	LowGQX	END=39900091	GT	./.
chr1	39900092	.	A	.	.	LowGQX	END=39900097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39900098	.	T	.	.	LowGQX	.	GT	./.
chr1	39900099	.	C	.	.	LowGQX	END=39900120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39900121	.	C	.	.	LowGQX	.	GT	./.
chr1	39900122	.	A	.	.	LowGQX	END=39900125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39900126	.	G	.	.	LowGQX	.	GT	./.
chr1	39900127	.	C	.	.	LowGQX	END=39900132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39900133	.	C	.	.	LowGQX	.	GT	./.
chr1	39900134	.	A	.	.	LowGQX	END=39900135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39900136	.	T	.	.	LowGQX	.	GT	./.
chr1	39900137	.	T	.	.	LowGQX	END=39900142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39900143	.	C	.	.	LowGQX	.	GT	./.
chr1	39900144	.	G	.	.	LowGQX	END=39900181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39900182	.	C	.	.	LowGQX	.	GT	./.
chr1	39900183	.	A	.	.	LowGQX	END=39900185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39900186	.	T	.	.	LowGQX	.	GT	./.
chr1	39900187	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	39900188	.	T	.	.	LowGQX	END=39900192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39900193	.	A	.	.	LowGQX	.	GT	./.
chr1	39900194	.	A	.	.	LowGQX	END=39900195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39900196	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	39900197	.	T	.	.	LowGQX	END=39900215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39900216	.	G	.	.	LowGQX	.	GT	./.
chr1	39900217	.	G	.	.	LowGQX	END=39900226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39900227	.	A	.	.	LowGQX	.	GT	./.
chr1	39900228	.	C	.	.	LowGQX	END=39900232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39900233	.	G	.	.	LowGQX	.	GT	./.
chr1	39900234	.	C	.	.	LowGQX	END=39900245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39900246	.	A	.	.	LowGQX	.	GT	./.
chr1	39900247	.	G	.	.	LowGQX	END=39900251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39900252	.	C	.	.	LowGQX	.	GT	./.
chr1	39900253	.	C	.	.	LowGQX	END=39900255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39900256	.	T	.	.	LowGQX	.	GT	./.
chr1	39900257	.	C	.	.	LowGQX	END=39900259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39900260	.	G	.	.	LowGQX	.	GT	./.
chr1	39900261	.	C	.	.	LowGQX	END=39900265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39900266	.	G	.	.	LowGQX	.	GT	./.
chr1	39900267	.	A	.	.	LowGQX	END=39900269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39900270	.	A	.	.	LowGQX	END=39900271	GT	./.
chr1	39900272	.	G	.	.	LowGQX	END=39900278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39900279	.	T	.	.	LowGQX	.	GT	./.
chr1	39900280	.	C	.	.	LowGQX	END=39900285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39900286	.	G	.	.	LowGQX	END=39900302	GT	./.
chr1	39900303	.	G	.	.	LowGQX	END=39900306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39901228	.	A	.	.	LowGQX	END=39901431	GT	./.
chr1	39901432	.	A	.	.	LowGQX	END=39901437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39902106	.	C	.	.	LowGQX	END=39902136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39902137	.	C	.	.	LowGQX	.	GT	./.
chr1	39902138	.	G	.	.	LowGQX	END=39902151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39902152	.	A	.	.	LowGQX	.	GT	./.
chr1	39902153	.	G	.	.	LowGQX	END=39902159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39902160	.	G	.	.	LowGQX	.	GT	./.
chr1	39902161	.	A	.	.	LowGQX	END=39902167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39902168	.	G	.	.	LowGQX	.	GT	./.
chr1	39902169	.	T	.	.	LowGQX	END=39902177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39902178	.	C	.	.	LowGQX	END=39902205	GT	./.
chr1	39903290	.	A	.	.	LowGQX	END=39903389	GT	./.
chr1	39903446	.	T	.	.	LowGQX	END=39903682	GT	./.
chr1	39904944	.	A	.	.	LowGQX	END=39904996	GT	./.
chr1	39904997	.	C	.	.	LowGQX	END=39905010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39905011	.	C	.	.	LowGQX	.	GT	./.
chr1	39905012	.	G	.	.	LowGQX	END=39905147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39905148	.	C	.	.	LowGQX	END=39905174	GT	./.
chr1	39906673	.	A	.	.	LowGQX	END=39906799	GT	./.
chr1	39906894	.	A	.	.	LowGQX	END=39906999	GT	./.
chr1	39907562	.	A	.	.	LowGQX	END=39907727	GT	./.
chr1	39907817	.	A	.	.	LowGQX	END=39907994	GT	./.
chr1	39908082	.	A	.	.	LowGQX	END=39908170	GT	./.
chr1	39908171	.	T	.	.	LowGQX	END=39908241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39908384	.	A	.	.	LowGQX	END=39908585	GT	./.
chr1	39909116	.	A	.	.	LowGQX	END=39909248	GT	./.
chr1	39910332	.	A	.	.	LowGQX	END=39910509	GT	./.
chr1	39913102	.	A	.	.	LowGQX	END=39913261	GT	./.
chr1	39913362	.	A	.	.	LowGQX	END=39913572	GT	./.
chr1	39913703	.	A	.	.	LowGQX	END=39913826	GT	./.
chr1	39914264	.	A	.	.	LowGQX	END=39914437	GT	./.
chr1	39916722	.	A	.	.	LowGQX	END=39916838	GT	./.
chr1	39916839	.	C	.	.	LowGQX	END=39916885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39917826	.	A	.	.	LowGQX	END=39917948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39917949	.	T	.	.	LowGQX	END=39918024	GT	./.
chr1	39918354	.	A	.	.	LowGQX	END=39918486	GT	./.
chr1	39919377	.	A	.	.	LowGQX	END=39919413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39919414	.	C	.	.	LowGQX	END=39919524	GT	./.
chr1	39920579	.	A	.	.	LowGQX	END=39920771	GT	./.
chr1	39924040	.	A	.	.	LowGQX	END=39924164	GT	./.
chr1	39924756	.	A	.	.	LowGQX	END=39924923	GT	./.
chr1	39925448	.	C	.	.	LowGQX	END=39925547	GT	./.
chr1	39926302	.	A	.	.	LowGQX	END=39926468	GT	./.
chr1	39927553	.	A	.	.	LowGQX	END=39927564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	39927565	.	C	.	.	LowGQX	END=39927566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39927567	.	C	.	.	LowGQX	END=39927616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	39927617	.	G	.	.	LowGQX	END=39927711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39929272	.	C	.	.	LowGQX	END=39929371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39930726	.	T	.	.	LowGQX	END=39930825	GT	./.
chr1	39934285	.	A	.	.	LowGQX	END=39934406	GT	./.
chr1	39935203	.	G	.	.	LowGQX	END=39935302	GT	./.
chr1	39945468	.	A	.	.	LowGQX	END=39945683	GT	./.
chr1	39946591	.	G	.	.	LowGQX	END=39946702	GT	./.
chr1	39950271	.	A	.	.	LowGQX	END=39950494	GT	./.
chr1	39951208	.	A	.	.	LowGQX	END=39951452	GT	./.
chr1	39951453	.	G	.	.	LowGQX	END=39951468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39957651	.	C	.	.	LowGQX	END=39957933	GT	./.
chr1	39957934	.	G	.	.	LowGQX	END=39957935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39957936	.	C	.	.	LowGQX	.	GT	./.
chr1	39957937	.	G	.	.	LowGQX	END=39957947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	39957948	.	G	.	.	LowGQX	.	GT	./.
chr1	39957949	.	G	.	.	LowGQX	END=39957951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	39957952	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	39957953	.	A	.	.	LowGQX	END=39957955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	39957956	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	39957957	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	39957958	.	C	.	.	LowGQX	END=39957970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	39957971	.	A	.	.	LowGQX	.	GT	./.
chr1	39957972	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	39957973	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	39957974	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	39957975	.	G	.	.	LowGQX	END=39957979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	39957980	.	T	.	.	LowGQX	.	GT	./.
chr1	39957981	.	G	.	.	LowGQX	END=39957985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	39957986	.	T	.	.	LowGQX	.	GT	./.
chr1	39957987	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	39957988	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	39957989	.	T	.	.	LowGQX	END=39957994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	39957995	.	T	.	.	LowGQX	.	GT	./.
chr1	39957996	.	G	.	.	LowGQX	END=39958000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	39976833	.	C	.	.	LowGQX	END=39976854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:27
chr1	39976855	.	A	.	.	LowGQX	.	GT	./.
chr1	39976856	.	C	.	.	LowGQX	END=39976864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	39976865	.	G	.	.	LowGQX	.	GT	./.
chr1	39976866	.	G	.	.	LowGQX	END=39976887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	39976888	.	A	.	.	LowGQX	.	GT	./.
chr1	39976889	.	G	.	.	LowGQX	END=39976929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	39976930	.	C	.	2.30	LowGQX	DP=1;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:27:0
chr1	39976931	.	G	.	.	LowGQX	END=39976944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	39976945	.	A	.	.	LowGQX	END=39977037	GT	./.
chr1	39977395	.	G	.	.	LowGQX	END=39977578	GT	./.
chr1	39987035	.	C	.	.	LowGQX	END=39987155	GT	./.
chr1	39987156	.	C	.	.	LowGQX	END=39987244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	39988065	.	G	.	.	LowGQX	END=39988102	GT	./.
chr1	39988103	.	G	.	.	LowGQX	END=39988140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39988141	.	A	.	.	LowGQX	.	GT	./.
chr1	39988142	.	C	.	.	LowGQX	END=39988148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39988149	.	T	.	.	LowGQX	.	GT	./.
chr1	39988150	.	G	.	.	LowGQX	END=39988155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39988156	.	T	.	.	LowGQX	.	GT	./.
chr1	39988157	.	A	.	.	LowGQX	END=39988161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39988162	.	C	.	.	LowGQX	END=39988163	GT	./.
chr1	39988164	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39988677	.	A	.	.	LowGQX	END=39988790	GT	./.
chr1	39988791	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39991319	.	A	.	.	LowGQX	END=39991384	GT	./.
chr1	39991385	.	C	.	.	LowGQX	END=39991414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39991415	.	A	.	.	LowGQX	.	GT	./.
chr1	39991416	.	C	.	.	LowGQX	END=39991457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39991458	.	C	.	.	LowGQX	.	GT	./.
chr1	39991459	.	G	.	.	LowGQX	END=39991466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	39991467	.	C	.	.	LowGQX	.	GT	./.
chr1	39991468	.	T	.	.	LowGQX	END=39991472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40026738	.	T	.	.	LowGQX	END=40026837	GT	./.
chr1	40027365	.	C	.	.	LowGQX	END=40027464	GT	./.
chr1	40027743	.	A	.	.	LowGQX	END=40027877	GT	./.
chr1	40027992	.	C	.	.	LowGQX	END=40028046	GT	./.
chr1	40028047	.	C	.	.	LowGQX	END=40028091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40029284	.	A	.	.	LowGQX	END=40029375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40029376	.	A	.	.	LowGQX	END=40029415	GT	./.
chr1	40029502	.	T	.	.	LowGQX	END=40029601	GT	./.
chr1	40030094	.	C	.	.	LowGQX	END=40030110	GT	./.
chr1	40030111	.	A	.	.	LowGQX	END=40030122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40030123	.	A	.	.	LowGQX	.	GT	./.
chr1	40030124	.	C	.	.	LowGQX	END=40030137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40030138	.	A	.	.	LowGQX	.	GT	./.
chr1	40030139	.	T	.	.	LowGQX	END=40030152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40030153	.	C	.	.	LowGQX	.	GT	./.
chr1	40030154	.	A	.	.	LowGQX	END=40030216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40030352	.	A	.	.	LowGQX	END=40030451	GT	./.
chr1	40030776	.	A	.	.	LowGQX	END=40031052	GT	./.
chr1	40033046	.	A	.	.	LowGQX	END=40033066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40033067	.	A	.	.	LowGQX	END=40033119	GT	./.
chr1	40033120	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40033121	.	G	.	.	LowGQX	.	GT	./.
chr1	40033122	.	T	.	.	LowGQX	END=40033127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40033128	.	C	.	.	LowGQX	.	GT	./.
chr1	40033129	.	A	.	.	LowGQX	END=40033132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40033133	.	G	.	.	LowGQX	.	GT	./.
chr1	40033134	.	T	.	.	LowGQX	END=40033135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40033136	.	C	.	.	LowGQX	.	GT	./.
chr1	40033137	.	C	.	.	LowGQX	END=40033143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40033144	.	G	.	.	LowGQX	END=40033145	GT	./.
chr1	40033146	.	C	.	.	LowGQX	END=40033161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40033162	.	A	.	.	LowGQX	.	GT	./.
chr1	40033163	.	T	.	.	LowGQX	END=40033168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40033169	.	A	.	.	LowGQX	.	GT	./.
chr1	40033170	.	G	.	.	LowGQX	END=40033182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40033421	.	A	.	.	LowGQX	END=40033520	GT	./.
chr1	40034472	.	A	.	.	LowGQX	END=40034613	GT	./.
chr1	40035265	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	40035266	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	40035267	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	40035268	.	T	.	.	PASS	END=40035272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	40035273	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	40035274	.	G	.	.	PASS	END=40035280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	40035281	.	C	.	.	LowGQX	END=40035282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:27:60
chr1	40035283	.	T	.	.	PASS	END=40035284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	40035285	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	40035286	.	T	.	.	PASS	END=40035300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	40035301	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	40035302	.	A	.	.	PASS	END=40035304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	40035305	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	40035306	.	A	.	.	PASS	END=40035318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	40035319	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	40035320	.	T	.	.	PASS	END=40035321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	40035322	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	40035323	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	40035324	.	A	.	.	LowGQX	END=40035326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	40035327	.	G	.	.	PASS	END=40035332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	40035333	.	T	.	.	LowGQX	END=40035334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr1	40035335	.	T	.	.	PASS	END=40035338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	40035339	.	C	.	.	LowGQX	END=40035340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr1	40035341	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	40035342	.	C	.	.	LowGQX	END=40035348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	40035349	.	C	.	.	LowGQX	END=40035364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	40035533	.	A	.	.	LowGQX	END=40035562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40035563	.	C	.	.	LowGQX	END=40035571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	40035572	.	C	.	.	LowGQX	END=40035676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40036904	.	A	.	.	LowGQX	END=40037023	GT	./.
chr1	40037279	.	A	.	.	LowGQX	END=40037282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037283	.	G	.	.	LowGQX	END=40037285	GT	./.
chr1	40037286	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037287	.	G	.	.	LowGQX	END=40037288	GT	./.
chr1	40037289	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037290	.	G	.	.	LowGQX	.	GT	./.
chr1	40037291	.	T	.	.	LowGQX	END=40037292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037293	.	G	.	.	LowGQX	END=40037294	GT	./.
chr1	40037295	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037296	.	C	.	.	LowGQX	END=40037297	GT	./.
chr1	40037298	.	T	.	.	LowGQX	END=40037299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037300	.	C	.	.	LowGQX	END=40037301	GT	./.
chr1	40037302	.	T	.	.	LowGQX	END=40037303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037304	.	T	.	.	LowGQX	.	GT	./.
chr1	40037305	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037306	.	A	.	.	LowGQX	.	GT	./.
chr1	40037307	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037308	.	C	.	.	LowGQX	END=40037310	GT	./.
chr1	40037311	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037312	.	A	.	.	LowGQX	.	GT	./.
chr1	40037313	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037314	.	G	.	.	LowGQX	END=40037315	GT	./.
chr1	40037316	.	T	.	.	LowGQX	END=40037317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037318	.	T	.	.	LowGQX	.	GT	./.
chr1	40037319	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037320	.	G	.	.	LowGQX	END=40037325	GT	./.
chr1	40037326	.	C	.	.	LowGQX	END=40037327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037328	.	A	.	.	LowGQX	END=40037332	GT	./.
chr1	40037333	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037334	.	G	.	.	LowGQX	.	GT	./.
chr1	40037335	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037336	.	G	.	.	LowGQX	END=40037355	GT	./.
chr1	40037356	.	T	.	.	LowGQX	END=40037360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037361	.	C	.	.	LowGQX	END=40037363	GT	./.
chr1	40037364	.	T	.	.	LowGQX	END=40037368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037369	.	A	.	.	LowGQX	.	GT	./.
chr1	40037370	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037371	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	40037372	.	C	.	.	LowGQX	.	GT	./.
chr1	40037373	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40037374	.	G	.	.	LowGQX	.	GT	./.
chr1	40037375	.	T	.	.	LowGQX	END=40037378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40038063	.	A	.	.	LowGQX	END=40038260	GT	./.
chr1	40041429	.	A	.	.	LowGQX	END=40041625	GT	./.
chr1	40092177	.	G	.	.	LowGQX	END=40092854	GT	./.
chr1	40095890	.	C	.	.	LowGQX	END=40095971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40095972	.	G	.	.	LowGQX	END=40095989	GT	./.
chr1	40097160	.	T	.	.	LowGQX	END=40097259	GT	./.
chr1	40098305	.	T	.	.	LowGQX	END=40098404	GT	./.
chr1	40105148	.	G	.	.	LowGQX	END=40105162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40105163	.	C	.	.	LowGQX	END=40105204	GT	./.
chr1	40105205	.	T	.	.	LowGQX	END=40105307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40124791	.	A	.	.	LowGQX	END=40125013	GT	./.
chr1	40125014	.	G	.	.	LowGQX	END=40125109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40125110	.	A	.	.	LowGQX	.	GT	./.
chr1	40125111	.	C	.	.	LowGQX	END=40125160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40126749	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40126750	.	C	.	.	LowGQX	.	GT	./.
chr1	40126751	.	C	.	.	LowGQX	END=40126752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40126753	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	40126754	.	A	.	.	LowGQX	END=40126801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40126802	.	C	.	.	LowGQX	.	GT	./.
chr1	40126803	.	A	.	.	LowGQX	END=40126809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40126810	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	40126811	.	G	.	.	LowGQX	END=40126813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40126814	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	40126815	.	T	.	.	LowGQX	END=40126817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40126818	.	A	.	.	LowGQX	.	GT	./.
chr1	40126819	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40126820	.	G	.	.	LowGQX	.	GT	./.
chr1	40126821	.	A	.	.	LowGQX	END=40126828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40126829	.	C	.	.	LowGQX	.	GT	./.
chr1	40126830	.	G	.	.	LowGQX	END=40126849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40126850	.	G	.	.	LowGQX	END=40126937	GT	./.
chr1	40128982	.	A	.	.	LowGQX	END=40129108	GT	./.
chr1	40131191	.	A	.	.	LowGQX	END=40131324	GT	./.
chr1	40131739	.	A	.	.	LowGQX	END=40131763	GT	./.
chr1	40131764	.	C	.	.	LowGQX	END=40131770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40131771	.	G	.	.	LowGQX	.	GT	./.
chr1	40131772	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40131773	.	A	.	.	LowGQX	.	GT	./.
chr1	40131774	.	G	.	.	LowGQX	END=40131775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40131776	.	G	.	.	LowGQX	.	GT	./.
chr1	40131777	.	T	.	.	LowGQX	END=40131780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40131781	.	T	.	.	LowGQX	.	GT	./.
chr1	40131782	.	T	.	.	LowGQX	END=40131785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40131786	.	A	.	.	LowGQX	.	GT	./.
chr1	40131787	.	T	.	.	LowGQX	END=40131808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40131809	.	A	.	.	LowGQX	.	GT	./.
chr1	40131810	.	C	.	.	LowGQX	END=40131833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40131834	.	G	.	.	LowGQX	.	GT	./.
chr1	40131835	.	A	.	.	LowGQX	END=40131866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40131867	.	T	.	.	LowGQX	.	GT	./.
chr1	40131868	.	C	.	.	LowGQX	END=40131909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40131910	.	T	.	.	LowGQX	.	GT	./.
chr1	40137543	.	C	.	.	LowGQX	END=40137712	GT	./.
chr1	40148206	.	T	.	.	LowGQX	END=40148253	GT	./.
chr1	40148254	.	C	.	.	LowGQX	END=40148281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40148282	.	A	G	14.85	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.42;SB=-25.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	40148283	.	T	.	.	LowGQX	END=40148355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40148356	.	T	.	.	LowGQX	.	GT	./.
chr1	40148357	.	C	.	.	LowGQX	END=40148383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40148384	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	40148385	.	G	.	.	LowGQX	END=40148402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	40148403	.	T	.	.	LowGQX	END=40148404	GT	./.
chr1	40148405	.	C	.	.	LowGQX	END=40148406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40148407	.	T	.	.	LowGQX	.	GT	./.
chr1	40149607	.	A	.	.	LowGQX	END=40149635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40149636	.	C	.	.	LowGQX	END=40149826	GT	./.
chr1	40150112	.	A	.	.	LowGQX	END=40150277	GT	./.
chr1	40204479	.	C	.	.	LowGQX	END=40204525	GT	./.
chr1	40204526	.	G	.	.	LowGQX	END=40204541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40204542	.	C	.	.	LowGQX	.	GT	./.
chr1	40204543	.	T	.	.	LowGQX	END=40204546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40204547	.	T	.	.	LowGQX	.	GT	./.
chr1	40204548	.	T	.	.	LowGQX	END=40204566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40204567	.	A	.	.	LowGQX	.	GT	./.
chr1	40204568	.	G	.	.	LowGQX	END=40204572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40204573	.	A	.	.	LowGQX	.	GT	./.
chr1	40204574	.	T	.	.	LowGQX	END=40204576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40204577	.	C	.	.	LowGQX	.	GT	./.
chr1	40204578	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40204579	.	A	.	.	LowGQX	.	GT	./.
chr1	40204580	.	C	.	.	LowGQX	END=40204581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40204582	.	A	.	.	LowGQX	END=40204583	GT	./.
chr1	40204584	.	C	.	.	LowGQX	END=40204585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40204586	.	A	.	.	LowGQX	.	GT	./.
chr1	40204587	.	G	.	.	LowGQX	END=40204590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40204591	.	G	.	.	LowGQX	.	GT	./.
chr1	40204592	.	T	.	.	LowGQX	END=40204608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40204609	.	C	A	9.80	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=4.90;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,1:2:3.01:39,3,0:60:3:0.500
chr1	40204610	.	A	.	.	LowGQX	END=40204638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40205835	.	A	.	.	LowGQX	END=40205925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40205926	.	T	.	.	LowGQX	END=40205937	GT	./.
chr1	40207010	.	T	.	.	LowGQX	END=40207091	GT	./.
chr1	40207092	.	G	.	.	LowGQX	END=40207109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40207531	.	C	.	.	LowGQX	END=40207630	GT	./.
chr1	40208879	.	T	.	.	LowGQX	END=40208978	GT	./.
chr1	40209494	.	A	.	.	LowGQX	END=40209598	GT	./.
chr1	40211045	.	A	.	.	LowGQX	END=40211172	GT	./.
chr1	40214562	.	T	.	.	LowGQX	END=40214711	GT	./.
chr1	40214712	.	G	.	.	LowGQX	END=40214723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40214724	.	G	.	.	LowGQX	.	GT	./.
chr1	40214725	.	A	.	.	LowGQX	END=40214728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40214729	.	T	.	.	LowGQX	.	GT	./.
chr1	40214730	.	G	.	.	LowGQX	END=40214734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40214735	.	C	.	.	LowGQX	END=40214736	GT	./.
chr1	40214737	.	T	.	.	LowGQX	END=40214741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40214742	.	C	.	.	LowGQX	.	GT	./.
chr1	40214743	.	T	.	.	LowGQX	END=40214746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40214747	.	G	.	.	LowGQX	.	GT	./.
chr1	40214748	.	C	.	.	LowGQX	END=40214752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40214753	.	G	.	.	LowGQX	.	GT	./.
chr1	40214754	.	G	.	.	LowGQX	END=40214755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40214756	.	A	.	.	LowGQX	.	GT	./.
chr1	40214757	.	C	.	.	LowGQX	END=40214759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40214760	.	G	.	.	LowGQX	.	GT	./.
chr1	40214761	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40214762	.	T	.	.	LowGQX	.	GT	./.
chr1	40218580	.	A	.	.	LowGQX	END=40218595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	40218596	.	G	.	.	LowGQX	END=40218622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	40218623	.	T	.	.	LowGQX	END=40218721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	40218722	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:0:60
chr1	40218723	.	A	.	.	LowGQX	END=40218724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	40218725	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	40218726	.	T	.	.	LowGQX	END=40218728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	40218729	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:0:60
chr1	40218730	.	T	.	.	LowGQX	END=40218753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	40218754	.	A	.	.	LowGQX	END=40218757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	40218758	.	A	.	.	LowGQX	END=40218759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	40218944	.	T	.	.	LowGQX	END=40219000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40219001	.	A	.	.	LowGQX	.	GT	./.
chr1	40219002	.	T	.	.	LowGQX	END=40219007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40219008	.	A	.	.	LowGQX	.	GT	./.
chr1	40219009	.	C	.	.	LowGQX	END=40219043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40226089	.	A	.	.	LowGQX	END=40226242	GT	./.
chr1	40228188	.	G	.	.	LowGQX	END=40228296	GT	./.
chr1	40228710	.	T	.	.	LowGQX	END=40228726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40228727	.	A	.	.	LowGQX	.	GT	./.
chr1	40228728	.	C	.	.	LowGQX	END=40228740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40228741	.	G	.	.	LowGQX	.	GT	./.
chr1	40228742	.	G	.	.	LowGQX	END=40228764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40228765	.	A	.	.	LowGQX	END=40228825	GT	./.
chr1	40228826	.	C	.	.	LowGQX	END=40228876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40229356	.	T	.	.	LowGQX	END=40229465	GT	./.
chr1	40230282	.	G	.	.	LowGQX	END=40230286	GT	./.
chr1	40230287	.	A	.	.	LowGQX	END=40230477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	40230478	.	C	.	.	LowGQX	END=40230607	GT	./.
chr1	40230608	.	G	.	.	LowGQX	END=40230665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	40230666	.	C	.	.	LowGQX	.	GT	./.
chr1	40230667	.	A	.	.	LowGQX	END=40230680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	40235372	.	C	.	.	LowGQX	END=40235383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40235384	.	A	.	.	LowGQX	.	GT	./.
chr1	40235385	.	C	.	.	LowGQX	END=40235535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40235536	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	40235537	.	T	.	.	LowGQX	END=40235538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40235539	.	C	.	.	LowGQX	END=40236163	GT	./.
chr1	40236164	.	G	.	.	LowGQX	END=40236311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr1	40236312	.	C	.	.	LowGQX	END=40236345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	40236346	.	G	.	.	LowGQX	END=40236934	GT	./.
chr1	40239978	.	A	.	.	LowGQX;LowMQ	END=40240115	GT	./.
chr1	40240116	.	C	.	.	LowGQX	END=40240166	GT	./.
chr1	40240508	.	A	.	.	LowGQX	END=40240712	GT	./.
chr1	40253811	.	C	.	.	LowGQX	END=40254160	GT	./.
chr1	40307414	.	T	.	.	LowGQX	END=40307587	GT	./.
chr1	40309771	.	A	.	.	LowGQX	END=40309892	GT	./.
chr1	40310201	.	A	.	.	LowGQX	END=40310314	GT	./.
chr1	40312881	.	A	.	.	LowGQX	END=40312980	GT	./.
chr1	40313218	.	A	.	.	LowGQX	END=40313321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40313322	.	G	.	.	LowGQX	.	GT	./.
chr1	40313323	.	A	.	.	LowGQX	END=40313334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40313656	.	A	.	.	LowGQX	END=40313761	GT	./.
chr1	40313762	.	A	.	.	LowGQX	END=40313771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40315789	.	A	.	.	LowGQX	END=40315882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40315883	.	T	.	.	LowGQX	END=40315935	GT	./.
chr1	40318401	.	A	.	.	LowGQX	.	GT	./.
chr1	40318402	.	C	.	.	LowGQX	END=40318550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40319620	.	G	.	.	LowGQX	END=40319742	GT	./.
chr1	40322946	.	T	.	.	LowGQX	END=40323091	GT	./.
chr1	40348968	.	C	.	.	LowGQX	END=40349165	GT	./.
chr1	40363042	.	A	.	.	PASS	END=40363053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	40363054	.	G	C	1175.20	PASS	BaseQRankSum=0.921;DP=103;Dels=0.00;FS=3.060;HRun=0;HaplotypeScore=11.4055;MQ=60;MQ0=0;MQRankSum=-0.129;QD=11.41;ReadPosRankSum=1.396;SB=-491.66	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:50,53:103:99:1205,0,1252:60:99:0.515
chr1	40363055	.	T	.	.	PASS	END=40363092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	40363093	.	C	.	.	PASS	END=40363189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	40363190	.	C	.	.	PASS	END=40363235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	40363236	.	G	.	.	PASS	END=40363346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	40363347	.	A	.	.	PASS	END=40363388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	40363389	.	C	.	.	PASS	END=40363459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	40363460	.	C	.	.	PASS	END=40363488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	40363489	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:66:60
chr1	40363490	.	G	.	.	PASS	END=40363508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	40363509	.	T	.	.	PASS	END=40363557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	40363558	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr1	40363559	.	C	.	.	PASS	END=40363605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	40363606	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:49:60
chr1	40363607	.	T	.	.	PASS	END=40363614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	40363615	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:56:60
chr1	40363616	.	C	.	.	PASS	END=40363633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:69:60
chr1	40363634	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:42:60
chr1	40363635	.	T	.	.	PASS	END=40363644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	40366485	.	T	.	.	PASS	END=40366508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	40366509	.	G	.	.	PASS	END=40366711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	40366712	.	G	.	.	PASS	END=40366777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	40366778	.	C	.	.	PASS	END=40366833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr1	40366834	.	G	.	.	PASS	END=40367057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:278:99:60
chr1	40367058	.	C	.	.	PASS	END=40367103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	40367104	.	C	.	.	PASS	END=40367115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	40367418	.	C	.	.	LowGQX	END=40367421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	40367422	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:60
chr1	40367423	.	T	.	.	LowGQX	END=40367424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	40367425	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:60
chr1	40367426	.	A	.	.	LowGQX	END=40367436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	40367437	.	A	.	.	LowGQX	END=40367477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40367478	.	A	.	.	LowGQX	.	GT	./.
chr1	40367479	.	C	.	.	LowGQX	END=40367485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40367486	.	C	.	.	LowGQX	.	GT	./.
chr1	40367487	.	C	.	.	LowGQX	END=40367488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40367489	.	G	.	.	LowGQX	.	GT	./.
chr1	40367490	.	C	.	.	LowGQX	END=40367499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40367500	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	40367501	.	C	.	.	LowGQX	END=40367528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40367529	.	G	.	.	LowGQX	END=40367530	GT	./.
chr1	40367531	.	G	.	.	LowGQX	END=40367532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40367533	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	40367534	.	A	.	.	LowGQX	END=40367569	GT	./.
chr1	40420963	.	T	.	.	PASS	END=40421054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	40421055	.	A	.	.	PASS	END=40421078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	40421079	.	T	.	.	PASS	END=40421122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	40421123	.	C	.	.	PASS	END=40421148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:87:60
chr1	40421149	.	A	.	.	PASS	END=40421159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	40421160	.	A	.	.	PASS	END=40421171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:77:60
chr1	40421172	.	G	.	.	PASS	END=40421175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	40421176	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:54:60
chr1	40421177	.	C	.	.	PASS	END=40421187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	40421188	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:63:60
chr1	40421189	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:84:60
chr1	40421190	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:38:60
chr1	40421191	.	G	.	.	PASS	END=40421192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	40421193	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:45:60
chr1	40421194	.	C	.	.	PASS	END=40421195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	40421196	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:39:60
chr1	40421197	.	G	.	.	PASS	END=40421201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	40421202	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:30:60
chr1	40421203	.	G	.	.	PASS	END=40421206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	40421207	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:0:60
chr1	40421208	.	G	.	.	PASS	END=40421212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	40421213	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:60
chr1	40421214	.	G	.	.	PASS	END=40421218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	40421219	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:0:60
chr1	40421220	.	G	.	.	PASS	END=40421229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	40421230	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr1	40421231	.	G	.	.	PASS	END=40421232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	40421233	.	T	.	.	PASS	END=40421234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	40421235	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:18:60
chr1	40421236	.	G	.	.	PASS	END=40421240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	40421241	.	C	.	.	PASS	END=40421257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	40421258	.	T	.	.	PASS	END=40421259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	40421260	.	A	.	.	PASS	END=40421265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	40421266	.	A	.	.	PASS	END=40421271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	40421272	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	40421273	.	G	.	.	PASS	END=40421274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	40421275	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	40421276	.	C	.	.	PASS	END=40421287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	40421288	.	T	.	45.04	LowGQX	DP=10;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:15.05:60:15
chr1	40421289	.	C	.	.	LowGQX	END=40421290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	40421291	.	G	.	.	PASS	END=40421292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	40421293	.	C	.	.	LowGQX	END=40421294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	40421295	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	40421296	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	40421297	.	A	.	.	PASS	END=40421298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	40421299	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	40421300	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	40421301	.	C	.	.	LowGQX	END=40421303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	40421304	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	40421305	.	G	.	.	LowGQX	END=40421308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	40421309	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:60
chr1	40421310	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	40421311	.	C	.	.	LowGQX	END=40421316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	40421317	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:1:60
chr1	40421318	.	C	.	.	LowGQX	END=40421323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	40421324	.	A	.	48.05	LowGQX	DP=8;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:8:18.06:60:18
chr1	40421325	.	G	.	.	LowGQX	END=40421326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	40421327	.	C	.	.	LowGQX	END=40421329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	40421330	.	T	.	.	LowGQX	END=40421331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:60
chr1	40421332	.	T	.	.	LowGQX	END=40421335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	40421336	.	T	.	.	LowGQX	END=40421337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	40421338	.	C	.	.	LowGQX	END=40421339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	40421340	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	40421341	.	C	.	.	LowGQX	END=40421343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	40421344	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	40421345	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	40421346	.	T	.	.	LowGQX	END=40421347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	40421348	.	G	.	.	LowGQX	END=40421353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	40421354	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:60
chr1	40421355	.	T	.	.	LowGQX	END=40421358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	40421359	.	G	.	.	LowGQX	END=40421363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	40421364	.	C	.	.	LowGQX	END=40421371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	40421372	.	A	.	.	LowGQX	END=40421377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	40421378	.	A	.	.	LowGQX	END=40421383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	40421384	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	40421385	.	A	.	.	LowGQX	END=40421390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	40421391	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	40421392	.	A	.	.	LowGQX	END=40421396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	40421397	.	T	.	.	LowGQX	END=40421398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	40421399	.	G	.	.	LowGQX	END=40421413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	40421414	.	T	.	.	LowGQX	END=40421431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40421432	.	C	.	.	LowGQX	END=40421434	GT	./.
chr1	40421435	.	C	.	.	LowGQX	END=40421440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40421441	.	A	.	.	LowGQX	.	GT	./.
chr1	40421442	.	C	.	.	LowGQX	END=40421458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40421459	.	T	.	.	LowGQX	.	GT	./.
chr1	40421460	.	G	.	.	LowGQX	END=40421474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40421475	.	T	.	.	LowGQX	END=40421480	GT	./.
chr1	40422726	.	C	.	.	PASS	END=40422747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	40422748	.	C	.	.	PASS	END=40422852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr1	40422853	.	T	.	.	PASS	END=40422882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	40422883	.	A	.	.	PASS	END=40422895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	40424303	.	T	.	.	PASS	END=40424327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	40424328	.	G	.	.	PASS	END=40424357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	40424358	.	T	.	.	PASS	END=40424467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	40424468	.	C	.	.	PASS	END=40424494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	40424495	.	C	.	.	PASS	END=40424499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	40430881	.	A	.	.	PASS	END=40431008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	40431133	.	T	.	.	PASS	END=40431166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	40431167	.	C	.	.	PASS	END=40431206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	40431207	.	C	.	.	PASS	END=40431232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	40431527	.	A	.	.	PASS	END=40431555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	40431556	.	T	.	.	PASS	END=40431569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	40431570	.	A	.	.	PASS	END=40431590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:72:60
chr1	40431591	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:48:60
chr1	40431592	.	A	.	.	PASS	END=40431640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	40431641	.	A	.	.	PASS	END=40431660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	40431661	.	A	.	.	PASS	END=40431681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	40431682	.	A	.	.	PASS	END=40431688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	40432269	.	A	.	.	PASS	END=40432323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:280:99:60
chr1	40432324	.	T	.	.	PASS	END=40432368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	40432481	.	A	.	.	PASS	END=40432527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	40432528	.	G	.	.	PASS	END=40432606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	40432750	.	A	.	.	PASS	END=40432830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	40432831	.	T	.	.	PASS	END=40432849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	40433292	.	A	.	.	PASS	END=40433391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	40433474	.	A	.	.	PASS	END=40433549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	40433550	.	A	.	.	PASS	END=40433576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	40433577	.	C	.	.	PASS	END=40433590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	40434004	.	A	.	.	PASS	END=40434021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	40434022	.	G	.	.	PASS	END=40434139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	40434140	.	T	.	.	PASS	END=40434151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	40434239	.	A	.	.	PASS	END=40434297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:246:99:60
chr1	40434298	.	G	.	.	PASS	END=40434379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:249:99:60
chr1	40434380	.	A	.	.	PASS	END=40434409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	40434410	.	G	.	.	PASS	END=40434419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	40435099	.	G	.	.	PASS	END=40435129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	40435130	.	G	.	.	PASS	END=40435156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	40435157	.	A	G	968.48	PASS	BaseQRankSum=0.303;DP=92;Dels=0.00;FS=10.928;HRun=0;HaplotypeScore=17.2942;MQ=60;MQ0=0;MQRankSum=-0.505;QD=10.53;ReadPosRankSum=-1.015;SB=-395.55	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:48,42:92:99:998,0,1137:60:99:0.467
chr1	40435158	.	T	.	.	PASS	END=40435243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	40435244	.	C	.	.	PASS	END=40435279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	40435280	.	C	.	.	PASS	END=40435314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	40525017	.	T	.	.	LowGQX	END=40525132	GT	./.
chr1	40525737	.	A	.	.	LowGQX	END=40525844	GT	./.
chr1	40527396	.	C	.	.	LowGQX	END=40527495	GT	./.
chr1	40529897	.	A	.	.	LowGQX	END=40530044	GT	./.
chr1	40530139	.	T	.	.	LowGQX	END=40530238	GT	./.
chr1	40531885	.	A	.	.	LowGQX	END=40531957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	40531958	.	A	.	.	LowGQX	END=40531986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40531987	.	A	.	.	LowGQX	END=40531994	GT	./.
chr1	40533199	.	C	.	.	LowGQX	END=40533409	GT	./.
chr1	40535349	.	G	.	.	LowGQX	END=40535369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40535370	.	C	.	.	LowGQX	.	GT	./.
chr1	40535371	.	A	.	.	LowGQX	END=40535379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40535380	.	A	.	.	LowGQX	.	GT	./.
chr1	40535381	.	T	.	.	LowGQX	END=40535382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40535383	.	A	.	.	LowGQX	.	GT	./.
chr1	40535384	.	C	.	.	LowGQX	END=40535386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40535387	.	G	.	.	LowGQX	.	GT	./.
chr1	40535388	.	A	.	.	LowGQX	END=40535394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40535395	.	A	.	.	LowGQX	END=40535396	GT	./.
chr1	40535397	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40535398	.	A	.	.	LowGQX	END=40535399	GT	./.
chr1	40535400	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40535401	.	A	.	.	LowGQX	.	GT	./.
chr1	40535402	.	C	.	.	LowGQX	END=40535407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40535408	.	C	.	.	LowGQX	END=40535409	GT	./.
chr1	40535410	.	T	.	.	LowGQX	END=40535422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40535423	.	T	.	.	LowGQX	END=40535548	GT	./.
chr1	40535829	.	A	.	.	LowGQX	END=40535956	GT	./.
chr1	40536094	.	T	.	.	LowGQX	END=40536193	GT	./.
chr1	40536506	.	A	.	.	LowGQX	END=40536653	GT	./.
chr1	40537114	.	A	.	.	LowGQX	END=40537213	GT	./.
chr1	40539682	.	G	.	.	PASS	END=40539711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	40539712	.	C	.	.	PASS	END=40539827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	40539828	.	T	.	.	PASS	END=40539846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	40539847	.	C	.	.	PASS	END=40539864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	40539865	.	G	.	.	PASS	END=40539879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	40539880	.	A	.	.	PASS	END=40539906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	40542463	.	C	.	.	PASS	END=40542500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	40542501	.	C	.	.	PASS	END=40542605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr1	40542606	.	A	.	.	PASS	END=40542634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	40542635	.	C	.	.	PASS	END=40542636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	40544181	.	C	.	.	PASS	END=40544200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	40544201	.	C	.	.	PASS	END=40544214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	40544215	.	C	.	.	PASS	END=40544329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	40544330	.	C	.	.	PASS	END=40544358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	40544359	.	T	.	.	PASS	END=40544366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	40544367	.	A	.	.	PASS	END=40544381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	40544446	.	G	.	.	PASS	END=40544454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	40544455	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:60:60
chr1	40544456	.	G	.	.	PASS	END=40544465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	40544466	.	T	.	.	PASS	END=40544468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	40544469	.	C	.	.	PASS	END=40544484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	40544485	.	T	.	.	PASS	END=40544486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	40544487	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:51:60
chr1	40544488	.	A	.	.	PASS	END=40544490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	40544491	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr1	40544492	.	C	.	.	PASS	END=40544545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	40546018	.	C	.	.	PASS	END=40546048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	40546049	.	A	.	.	PASS	END=40546074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	40546075	.	C	.	.	PASS	END=40546133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	40546134	.	C	.	.	PASS	END=40546189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	40546190	.	A	.	.	PASS	END=40546205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	40546206	.	G	.	.	PASS	END=40546210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	40555031	.	A	.	.	PASS	END=40555069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:87:60
chr1	40555070	.	A	.	.	PASS	END=40555084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	40555085	.	T	.	.	PASS	END=40555161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	40555162	.	G	.	.	PASS	END=40555176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	40555177	.	A	.	.	PASS	END=40555209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	40555210	.	A	.	.	PASS	END=40555222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	40555223	.	T	.	.	PASS	END=40555236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	40555237	.	C	.	.	PASS	END=40555241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	40555242	.	T	.	.	PASS	END=40555249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	40555250	.	A	.	.	PASS	END=40555254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	40555255	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:6:60
chr1	40555256	.	T	.	.	PASS	END=40555259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	40555260	.	A	.	.	PASS	END=40555268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	40555269	.	A	.	.	PASS	END=40555280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	40555281	.	A	.	.	PASS	END=40555282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	40555283	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:39:60
chr1	40555284	.	C	.	.	PASS	END=40555286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	40555287	.	T	.	.	PASS	END=40555299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	40556946	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:69:56:60
chr1	40556947	.	A	.	.	PASS	END=40557030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	40557031	.	T	.	.	PASS	END=40557050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:85:60
chr1	40557051	.	C	.	.	PASS	END=40557062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	40557063	.	A	.	.	PASS	END=40557075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	40557076	.	G	.	.	PASS	END=40557085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	40557086	.	G	.	.	PASS	END=40557097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	40557098	.	C	.	.	PASS	END=40557122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	40557666	.	A	.	.	PASS	END=40557679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	40557680	.	C	.	.	PASS	END=40557694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	40557695	.	A	.	.	PASS	END=40557728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	40557729	.	C	.	.	PASS	END=40557739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	40557740	.	T	.	.	PASS	END=40557748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	40557749	.	A	.	.	PASS	END=40557773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	40557774	.	T	.	.	PASS	END=40557792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	40557793	.	A	.	.	PASS	END=40557895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	40558019	.	C	.	.	PASS	END=40558044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:88:60
chr1	40558045	.	A	.	.	PASS	END=40558067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	40558068	.	A	.	.	PASS	END=40558170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	40558171	.	A	.	.	PASS	END=40558213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	40558214	.	G	.	.	PASS	END=40558230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:98:60
chr1	40559599	.	T	.	.	LowGQX	END=40559698	GT	./.
chr1	40562736	.	G	.	.	PASS	END=40562783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	40562784	.	C	.	.	PASS	END=40562866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	40562867	.	A	.	.	PASS	END=40562893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	40562894	.	C	.	.	PASS	END=40562929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	40562930	.	C	.	.	PASS	END=40562950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	40562951	.	A	.	.	PASS	END=40562961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	40627045	.	G	.	.	LowGQX	END=40627093	GT	./.
chr1	40627094	.	C	.	.	LowGQX	END=40627118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40627119	.	T	.	.	LowGQX	.	GT	./.
chr1	40627120	.	G	.	.	LowGQX	END=40627244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40627245	.	A	.	.	LowGQX	END=40627379	GT	./.
chr1	40654725	.	A	.	.	LowGQX	END=40654883	GT	./.
chr1	40656435	.	T	.	.	LowGQX	END=40656514	GT	./.
chr1	40656515	.	A	.	.	LowGQX	END=40656534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40661302	.	A	.	.	LowGQX	END=40661438	GT	./.
chr1	40668012	.	A	.	.	LowGQX	END=40668044	GT	./.
chr1	40668045	.	G	.	.	LowGQX	END=40668111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40668112	.	T	.	.	LowGQX	END=40668331	GT	./.
chr1	40688244	.	A	.	.	LowGQX	END=40688279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40688280	.	T	.	.	LowGQX	.	GT	./.
chr1	40688281	.	C	.	.	LowGQX	END=40688334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40688335	.	G	.	.	LowGQX	END=40688384	GT	./.
chr1	40697158	.	A	.	.	LowGQX	END=40697332	GT	./.
chr1	40701462	.	A	.	.	LowGQX	END=40702753	GT	./.
chr1	40702754	.	C	.	.	LowGQX	END=40702835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40702836	.	A	.	.	LowGQX	.	GT	./.
chr1	40702837	.	C	.	.	LowGQX	END=40702871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40702872	.	A	.	.	LowGQX	.	GT	./.
chr1	40702873	.	C	.	.	LowGQX	END=40702893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40702894	.	T	.	.	LowGQX	.	GT	./.
chr1	40702895	.	G	.	.	LowGQX	END=40702901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40702902	.	C	.	.	LowGQX	END=40703089	GT	./.
chr1	40703090	.	G	.	.	LowGQX	END=40703091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40703092	.	T	.	.	LowGQX	.	GT	./.
chr1	40703093	.	T	.	.	LowGQX	END=40703101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40703102	.	G	.	.	LowGQX	.	GT	./.
chr1	40703103	.	A	.	.	LowGQX	END=40703104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40703105	.	G	.	.	LowGQX	.	GT	./.
chr1	40703106	.	A	.	.	LowGQX	END=40703108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40703109	.	T	.	.	LowGQX	.	GT	./.
chr1	40703110	.	A	.	.	LowGQX	END=40703117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40703118	.	C	.	.	LowGQX	.	GT	./.
chr1	40703119	.	A	.	.	LowGQX	END=40703124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40703125	.	T	.	.	LowGQX	.	GT	./.
chr1	40703126	.	C	.	.	LowGQX	END=40703151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40703152	.	G	.	.	LowGQX	END=40703154	GT	./.
chr1	40703155	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40703156	.	T	.	.	LowGQX	.	GT	./.
chr1	40703157	.	C	.	.	LowGQX	END=40703170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40703171	.	T	.	.	LowGQX	.	GT	./.
chr1	40703172	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40703173	.	T	.	.	LowGQX	.	GT	./.
chr1	40703174	.	G	.	.	LowGQX	END=40703198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40703199	.	G	.	.	LowGQX	.	GT	./.
chr1	40703200	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40703201	.	T	.	.	LowGQX	.	GT	./.
chr1	40703202	.	C	.	.	LowGQX	END=40703207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40703208	.	T	.	.	LowGQX	.	GT	./.
chr1	40703209	.	G	.	.	LowGQX	END=40703239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40703240	.	T	.	.	LowGQX	END=40704530	GT	./.
chr1	40704531	.	C	.	.	LowGQX	END=40704544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40704545	.	C	.	.	LowGQX	.	GT	./.
chr1	40704546	.	A	.	.	LowGQX	END=40704590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40704591	.	G	.	.	LowGQX	.	GT	./.
chr1	40704592	.	G	.	.	LowGQX	END=40704614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40704615	.	G	.	.	LowGQX	.	GT	./.
chr1	40704616	.	C	.	.	LowGQX	END=40704619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40704620	.	G	.	.	LowGQX	.	GT	./.
chr1	40704621	.	C	.	.	LowGQX	END=40704622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40704623	.	G	.	.	LowGQX	.	GT	./.
chr1	40704624	.	T	.	.	LowGQX	END=40704636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40704637	.	C	.	.	LowGQX	.	GT	./.
chr1	40704638	.	A	.	.	LowGQX	END=40704681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40704682	.	G	.	.	LowGQX	.	GT	./.
chr1	40704683	.	G	.	.	LowGQX	END=40704712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40704713	.	G	.	.	LowGQX	.	GT	./.
chr1	40704714	.	A	.	.	LowGQX	END=40704727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40704728	.	G	.	.	LowGQX	.	GT	./.
chr1	40704729	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40704730	.	C	.	.	LowGQX	.	GT	./.
chr1	40704731	.	C	.	.	LowGQX	END=40704795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40704796	.	T	.	.	LowGQX	END=40705040	GT	./.
chr1	40705041	.	G	.	.	LowGQX	END=40705275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:54
chr1	40705276	.	A	.	.	LowGQX	END=40705287	GT	./.
chr1	40705288	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40705289	.	A	.	.	LowGQX	.	GT	./.
chr1	40705290	.	C	.	.	LowGQX	END=40705329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40705330	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	40705331	.	G	.	.	LowGQX	END=40705442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40705443	.	A	.	.	LowGQX	END=40706121	GT	./.
chr1	40713664	.	A	.	.	LowGQX	END=40713707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40713708	.	T	.	.	LowGQX	END=40713904	GT	./.
chr1	40716943	.	G	.	.	LowGQX	END=40717268	GT	./.
chr1	40723893	.	T	.	.	PASS	END=40723913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	40723914	.	C	.	.	PASS	END=40723944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	40723945	.	T	.	.	PASS	END=40724055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	40724056	.	C	.	.	PASS	END=40724078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	40724079	.	A	.	.	PASS	END=40724098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	40724099	.	T	.	.	PASS	END=40724117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	40726460	.	T	.	.	PASS	END=40726507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	40726508	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:36:60
chr1	40726509	.	A	.	.	PASS	END=40726518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	40726519	.	A	.	.	PASS	END=40726547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	40726548	.	A	.	.	PASS	END=40726668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	40726669	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:99:60
chr1	40726670	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:61:60
chr1	40726671	.	T	.	.	PASS	END=40726697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	40726698	.	T	.	.	PASS	END=40726708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	40733407	.	G	.	.	PASS	END=40733412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	40733413	.	T	.	.	PASS	END=40733432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	40733433	.	G	.	.	PASS	END=40733507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	40733508	.	G	.	.	PASS	END=40733535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	40733536	.	G	.	.	PASS	END=40733589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	40733590	.	T	.	.	PASS	END=40733595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	40734040	.	T	.	.	PASS	END=40734089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	40734090	.	G	.	.	PASS	END=40734244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	40734245	.	A	.	.	PASS	END=40734258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	40735596	.	A	.	.	PASS	END=40735706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:85:60
chr1	40735707	.	T	.	.	PASS	END=40735719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	40735720	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:66:60
chr1	40735721	.	A	.	.	PASS	END=40735727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	40735728	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:57:60
chr1	40735729	.	T	.	.	PASS	END=40735745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	40735746	.	G	.	.	PASS	END=40735790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	40735791	.	G	.	.	PASS	END=40735800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	40735801	.	T	.	.	PASS	END=40735815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	40735816	.	T	.	.	PASS	END=40735850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	40737515	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:99:60
chr1	40737516	.	T	G	628.59	PASS	BaseQRankSum=0.070;DP=49;Dels=0.00;FS=1.552;HRun=1;HaplotypeScore=2.8912;MQ=60;MQ0=0;MQRankSum=-1.292;QD=12.83;ReadPosRankSum=0.391;SB=-87.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,23:49:99:659,0,668:60:99:0.469
chr1	40737517	.	T	.	.	PASS	END=40737549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	40737550	.	G	.	.	PASS	END=40737651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:79:60
chr1	40737652	.	T	.	.	PASS	END=40737676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	40737677	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:70:60
chr1	40737678	.	T	.	.	PASS	END=40737680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	40737681	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:66:60
chr1	40737682	.	T	.	.	PASS	END=40737700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	40737701	.	G	.	.	PASS	END=40737712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	40737713	.	G	.	.	PASS	END=40737720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	40737721	.	G	.	.	PASS	END=40737725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	40737726	.	A	.	.	PASS	END=40737737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	40737738	.	T	.	.	PASS	END=40737748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	40737749	.	T	.	.	PASS	END=40737758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	40746964	.	G	.	.	PASS	END=40747015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	40747016	.	A	.	.	PASS	END=40747097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr1	40747098	.	G	.	.	PASS	END=40747179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:60
chr1	40747180	.	A	.	.	PASS	END=40747240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr1	40751546	.	A	.	.	PASS	END=40751586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	40751587	.	T	.	.	PASS	END=40751617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	40751618	.	A	.	.	PASS	END=40751631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	40751632	.	C	.	.	PASS	END=40751752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	40756475	.	T	.	.	PASS	END=40756508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	40756509	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:45:60
chr1	40756510	.	A	.	.	PASS	END=40756553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:78:60
chr1	40756554	.	T	.	.	PASS	END=40756608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	40756609	.	C	.	.	PASS	END=40756638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	40756639	.	C	.	.	PASS	END=40756669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr1	40756670	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:66:60
chr1	40756671	.	T	.	.	PASS	END=40756704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	40756705	.	T	.	.	PASS	END=40756710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr1	40756711	.	C	.	.	PASS	END=40756720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	40758066	.	T	.	.	PASS	END=40758140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	40758141	.	C	.	.	PASS	END=40758292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	40758293	.	T	.	.	PASS	END=40758343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	40758344	.	T	.	.	PASS	END=40758366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	40758367	.	C	.	.	PASS	END=40758392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	40766803	.	A	.	.	PASS	END=40766834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	40766835	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:60
chr1	40766836	.	T	.	.	PASS	END=40766849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	40766850	.	A	.	.	PASS	END=40766864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	40766865	.	T	.	.	PASS	END=40766896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	40766897	.	G	.	.	PASS	END=40767006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	40767007	.	A	.	.	PASS	END=40767030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	40767031	.	C	.	.	PASS	END=40767059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	40767060	.	A	.	.	PASS	END=40767062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	40767063	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:72:60
chr1	40767064	.	G	.	.	PASS	END=40767094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	40767095	.	T	.	.	PASS	END=40767096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	40767097	.	T	.	.	PASS	END=40767104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	40767433	.	T	.	.	PASS	END=40767560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	40767561	.	C	.	.	PASS	END=40767577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	40767578	.	A	G	1045.34	PASS	BaseQRankSum=-0.876;DP=104;Dels=0.00;FS=3.753;HRun=2;HaplotypeScore=21.7186;MQ=60;MQ0=0;MQRankSum=1.882;QD=10.05;ReadPosRankSum=0.185;SB=-537.65	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:61,42:104:99:1075,0,1766:60:99:0.408
chr1	40767579	.	A	.	.	PASS	END=40767612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	40768242	.	G	.	.	PASS	END=40768280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	40768281	.	A	.	.	PASS	END=40768297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	40768298	.	G	.	.	PASS	END=40768343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	40768344	.	C	T	718.37	PASS	BaseQRankSum=2.670;DP=78;Dels=0.00;FS=7.093;HRun=0;HaplotypeScore=11.4158;MQ=60;MQ0=0;MQRankSum=-0.465;QD=9.21;ReadPosRankSum=0.526;SB=-185.86	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:45,33:78:99:748,0,1011:60:99:0.423
chr1	40768345	.	G	.	.	PASS	END=40768404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	40768405	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:80:15:60
chr1	40768406	.	G	.	.	PASS	END=40768439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:92:60
chr1	40768440	.	G	.	.	PASS	END=40768466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	40768467	.	C	.	.	PASS	END=40768491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	40768492	.	G	.	.	PASS	END=40768493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	40768494	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:75:60
chr1	40768495	.	G	.	.	PASS	END=40768501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	40768502	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:75:60
chr1	40768503	.	G	.	.	PASS	END=40768532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:59
chr1	40768752	.	G	.	.	PASS	END=40768777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:86:60
chr1	40768778	.	G	.	.	PASS	END=40768817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	40768818	.	G	.	.	PASS	END=40768844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	40768845	.	T	.	.	PASS	END=40768908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	40769151	.	C	.	.	PASS	END=40769173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	40769174	.	G	T	928.83	PASS	BaseQRankSum=0.387;DP=70;Dels=0.00;FS=6.232;HRun=0;HaplotypeScore=19.9278;MQ=60;MQ0=0;MQRankSum=0.055;QD=13.27;ReadPosRankSum=-2.267;SB=-49.82	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:32,36:70:99:959,0,778:60:99:0.529
chr1	40769175	.	C	.	.	PASS	END=40769200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:90:60
chr1	40769201	.	C	.	.	PASS	END=40769220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	40769221	.	G	.	.	PASS	END=40769274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	40769275	.	G	.	.	PASS	END=40769365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	40769366	.	T	.	.	PASS	END=40769399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	40769428	.	A	.	.	PASS	END=40769434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	40769435	.	G	.	.	PASS	END=40769568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:61
chr1	40769569	.	C	.	.	PASS	END=40769583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	40769584	.	T	C	1745.33	PASS	BaseQRankSum=1.680;DP=152;Dels=0.00;FS=8.474;HRun=3;HaplotypeScore=16.2031;MQ=60;MQ0=0;MQRankSum=0.684;QD=11.48;ReadPosRankSum=2.292;SB=-744.43	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:84,68:152:99:1775,0,2318:60:99:0.447
chr1	40769585	.	A	.	.	PASS	END=40769587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	40769588	.	C	T	1735.63	PASS	BaseQRankSum=-4.506;DP=153;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=29.6131;MQ=60;MQ0=0;MQRankSum=-1.688;QD=11.34;ReadPosRankSum=-1.924;SB=-745.47	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:70,81:153:99:1766,0,1787:60:99:0.536
chr1	40769589	.	C	.	.	PASS	END=40769680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	40769681	.	G	.	.	PASS	END=40769712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	40769713	.	G	.	.	PASS	END=40769730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	40769731	.	C	.	.	PASS	END=40769767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	40769768	.	A	.	.	PASS	END=40769779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	40769780	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:74:60
chr1	40769781	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:99:60
chr1	40769782	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:71:60
chr1	40769783	.	G	.	.	PASS	END=40769802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	40769803	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:62:60
chr1	40769804	.	G	.	.	PASS	END=40769815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	40769816	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:50:60
chr1	40769817	.	C	.	.	PASS	END=40769821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	40769822	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:66:60
chr1	40769941	.	C	.	.	PASS	END=40769946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	40769947	.	G	.	.	PASS	END=40769971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	40769972	.	T	.	.	PASS	END=40769983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	40769984	.	T	.	.	PASS	END=40770024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	40770025	.	C	.	.	PASS	END=40770173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	40770174	.	C	.	.	PASS	END=40770243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	40770244	.	A	.	.	PASS	END=40770252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	40770415	.	G	.	.	PASS	END=40770424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	40770425	.	G	A	1044.57	PASS	BaseQRankSum=2.522;DP=80;Dels=0.00;FS=0.888;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=0.360;QD=13.06;ReadPosRankSum=-1.331;SB=-447.58	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:41,37:80:99:1075,0,1034:60:99:0.474
chr1	40770426	.	C	.	.	PASS	END=40770444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	40770445	.	G	.	.	PASS	END=40770455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	40770456	.	A	T	1306.37	PASS	BaseQRankSum=0.526;DP=113;Dels=0.00;FS=1.576;HRun=0;HaplotypeScore=11.5105;MQ=60;MQ0=0;MQRankSum=0.445;QD=11.56;ReadPosRankSum=-1.295;SB=-765.80	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:58,55:113:99:1336,0,1386:60:99:0.487
chr1	40770457	.	G	.	.	PASS	END=40770542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	40770543	.	T	.	.	PASS	END=40770569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	40770570	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:72:99:60
chr1	40771334	.	C	.	.	PASS	END=40771351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	40771352	.	G	.	.	PASS	END=40771390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	40771391	.	T	.	.	PASS	END=40771473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	40771474	.	G	.	.	PASS	END=40771491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	40771764	.	T	.	.	PASS	END=40771830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	40771831	.	C	.	.	PASS	END=40771910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	40773067	.	T	.	.	PASS	END=40773068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	40773069	.	A	.	.	PASS	END=40773070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	40773071	.	C	.	.	PASS	END=40773075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	40773076	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:66:60
chr1	40773077	.	C	.	.	PASS	END=40773081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	40773082	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:51:60
chr1	40773083	.	C	.	.	PASS	END=40773104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	40773105	.	A	.	.	PASS	END=40773139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	40773140	.	C	.	.	PASS	END=40773148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	40773149	.	T	C	882.15	PASS	BaseQRankSum=-0.650;DP=76;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=8.5223;MQ=60;MQ0=0;MQRankSum=-0.369;QD=11.61;ReadPosRankSum=0.640;SB=-363.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:40,36:76:99:912,0,954:60:99:0.474
chr1	40773150	.	G	.	.	PASS	END=40773168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	40773169	.	G	.	.	PASS	END=40773174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	40773175	.	G	C	1375.42	PASS	BaseQRankSum=0.080;DP=112;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=8.5750;MQ=60;MQ0=0;MQRankSum=-0.476;QD=12.28;ReadPosRankSum=-0.417;SB=-365.79	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:60,51:112:99:1405,0,1699:60:99:0.459
chr1	40773176	.	G	.	.	PASS	END=40773222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	40773324	.	G	.	.	PASS	END=40773343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	40773344	.	G	.	.	PASS	END=40773375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	40773376	.	T	.	.	PASS	END=40773462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	40773463	.	T	.	.	PASS	END=40773479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	40773813	.	G	.	.	PASS	END=40773815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	40773816	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:67:60
chr1	40773817	.	C	.	.	PASS	END=40773842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:79:60
chr1	40773843	.	G	.	.	PASS	END=40773890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	40773891	.	C	.	.	PASS	END=40773942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	40773943	.	A	.	.	PASS	END=40773968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:81:60
chr1	40775559	.	C	.	.	PASS	END=40775592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	40775593	.	G	.	.	PASS	END=40775645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	40775646	.	C	.	.	PASS	END=40775714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	40775732	.	G	.	.	PASS	END=40775859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	40775860	.	G	.	.	PASS	END=40775882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	40775883	.	G	.	.	PASS	END=40776040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	40776335	.	G	.	.	PASS	END=40776357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	40776358	.	A	.	.	PASS	END=40776400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	40776401	.	G	.	.	PASS	END=40776446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	40776447	.	G	.	.	PASS	END=40776476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	40776477	.	A	.	.	PASS	END=40776490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	40776714	.	A	.	.	PASS	END=40776744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:86:60
chr1	40776745	.	C	.	.	PASS	END=40776778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	40776779	.	G	.	.	PASS	END=40776992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	40776993	.	A	.	.	PASS	END=40777009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	40777121	.	T	.	.	PASS	END=40777132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	40777132	.	GC	G	284.78	SB	BaseQRankSum=-0.419;DP=27;FS=9.118;HRun=6;HaplotypeScore=63.6039;MQ=60;MQ0=0;MQRankSum=0.962;QD=10.55;ReadPosRankSum=0.864;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:16,11:27:99:324,0,470:60:99:0.407
chr1	40777133	.	C	.	69.11	PASS	DP=27;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:16:16:39.11:60:39
chr1	40777134	.	C	.	.	PASS	END=40777142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	40777143	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:54:60
chr1	40777144	.	T	.	.	PASS	END=40777150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	40777151	.	G	.	.	PASS	END=40777158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	40777159	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:66:60
chr1	40777160	.	C	.	.	PASS	END=40777187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	40777188	.	C	.	.	PASS	END=40777216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	40777217	.	A	.	.	PASS	END=40777270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	40777283	.	C	.	.	PASS	END=40777299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	40777300	.	C	.	.	PASS	END=40777433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	40777434	.	A	.	.	PASS	END=40777438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	40777668	.	C	.	.	PASS	END=40777704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	40777705	.	G	.	.	PASS	END=40777774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	40777775	.	C	.	.	PASS	END=40777799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	40777800	.	T	G	1265.33	PASS	BaseQRankSum=0.800;DP=104;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=30.3542;MQ=60;MQ0=0;MQRankSum=1.326;QD=12.17;ReadPosRankSum=-1.073;SB=-372.90	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:53,51:104:99:1295,0,1300:60:99:0.490
chr1	40777801	.	T	.	.	PASS	END=40777832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	40777833	.	C	.	.	PASS	END=40777835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	40778077	.	C	.	.	PASS	END=40778112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	40778113	.	T	.	.	PASS	END=40778175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	40778176	.	G	T	1184.52	PASS	BaseQRankSum=1.191;DP=116;Dels=0.00;FS=1.625;HRun=0;HaplotypeScore=18.9906;MQ=60;MQ0=0;MQRankSum=-0.678;QD=10.21;ReadPosRankSum=-0.504;SB=-632.16	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:64,51:116:99:1215,0,1592:60:99:0.443
chr1	40778177	.	C	.	.	PASS	END=40778250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	40778251	.	G	.	.	PASS	END=40778332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	40778352	.	C	.	.	PASS	END=40778376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	40778377	.	C	T	1095.58	PASS	BaseQRankSum=0.136;DP=101;Dels=0.00;FS=7.067;HRun=0;HaplotypeScore=16.0976;MQ=60;MQ0=0;MQRankSum=0.640;QD=10.85;ReadPosRankSum=0.087;SB=-610.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:50,49:101:99:1126,0,1405:60:99:0.495
chr1	40778378	.	G	.	.	PASS	END=40778507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	40779826	.	A	.	.	PASS	END=40779840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	40779841	.	G	T	945.76	PASS	BaseQRankSum=0.194;DP=82;Dels=0.00;FS=6.164;HRun=0;HaplotypeScore=23.8629;MQ=60;MQ0=0;MQRankSum=0.440;QD=11.53;ReadPosRankSum=-0.535;SB=-162.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:43,38:82:99:976,0,1267:60:99:0.469
chr1	40779842	.	C	.	.	PASS	END=40779870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	40779871	.	A	.	.	PASS	END=40779923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	40779924	.	G	.	.	PASS	END=40779955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	40779956	.	G	.	.	PASS	END=40780056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	40780057	.	A	.	.	PASS	END=40780085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	40780086	.	C	.	.	PASS	END=40780102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	40780103	.	T	.	.	PASS	END=40780110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	40781209	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:60:60
chr1	40781210	.	T	.	.	PASS	END=40781222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	40781223	.	C	.	.	PASS	END=40781238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	40781239	.	C	.	.	PASS	END=40781330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	40781331	.	A	.	.	PASS	END=40781361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	40781362	.	A	.	.	PASS	END=40781375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	40781376	.	G	.	.	PASS	END=40781383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	40781384	.	C	.	.	PASS	END=40781387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	40782233	.	C	.	.	LowGQX	END=40782392	GT	./.
chr1	40782684	.	G	.	.	PASS	END=40782687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:57:60
chr1	40782688	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:36:60
chr1	40782689	.	T	.	.	PASS	END=40782690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	40782691	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:35:27:60
chr1	40782692	.	G	.	.	PASS	END=40782723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	40782724	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:45:60
chr1	40782725	.	A	.	.	PASS	END=40782737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:72:60
chr1	40782738	.	C	.	.	PASS	END=40782743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	40782744	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:70:60
chr1	40782745	.	T	.	.	PASS	END=40782762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:93:60
chr1	40782763	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:67:60
chr1	40782764	.	A	.	.	PASS	END=40782838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	40782839	.	G	.	.	PASS	END=40782861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	40782862	.	G	.	.	PASS	END=40782868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	40782869	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:57:60
chr1	40782870	.	G	.	.	PASS	END=40782878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	40782879	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:30:60
chr1	40782880	.	G	.	.	PASS	END=40782883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr1	40782884	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:75:60
chr1	40782885	.	C	.	.	PASS	END=40782891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	40782892	.	G	.	.	PASS	END=40782896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	40782897	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:60:60
chr1	40782898	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:42:60
chr1	40782899	.	G	.	.	PASS	END=40782901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	40782902	.	T	.	.	PASS	END=40782903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	40782904	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:60
chr1	40782905	.	C	.	.	PASS	END=40782910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	40782911	.	A	.	.	PASS	END=40782919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	40782920	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:45:60
chr1	40839791	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40839792	.	C	.	.	LowGQX	END=40839897	GT	./.
chr1	40840324	.	A	.	.	LowGQX	END=40840423	GT	./.
chr1	40859083	.	G	.	.	LowGQX	END=40859182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40872406	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40872407	.	G	.	.	LowGQX	.	GT	./.
chr1	40872408	.	G	.	.	LowGQX	END=40872409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40872410	.	C	.	.	LowGQX	.	GT	./.
chr1	40872411	.	C	.	.	LowGQX	END=40872420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40872421	.	C	.	.	LowGQX	.	GT	./.
chr1	40872422	.	T	.	.	LowGQX	END=40872428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40872429	.	A	.	.	LowGQX	.	GT	./.
chr1	40872430	.	C	.	.	LowGQX	END=40872431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40872432	.	T	.	.	LowGQX	.	GT	./.
chr1	40872433	.	T	.	.	LowGQX	END=40872435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40872436	.	T	.	.	LowGQX	.	GT	./.
chr1	40872437	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	40872438	.	T	.	.	LowGQX	END=40872449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40872450	.	T	.	.	LowGQX	.	GT	./.
chr1	40872451	.	T	.	.	LowGQX	END=40872453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40872454	.	A	.	.	LowGQX	.	GT	./.
chr1	40872455	.	T	.	.	LowGQX	END=40872467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40872468	.	A	.	.	LowGQX	.	GT	./.
chr1	40872469	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40872470	.	A	.	.	LowGQX	.	GT	./.
chr1	40872471	.	G	.	.	LowGQX	END=40872476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40872477	.	T	.	.	LowGQX	.	GT	./.
chr1	40872478	.	G	.	.	LowGQX	END=40872485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40872486	.	A	.	.	LowGQX	END=40872489	GT	./.
chr1	40872490	.	A	.	.	LowGQX	END=40872493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40872494	.	A	.	.	LowGQX	.	GT	./.
chr1	40872495	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40872496	.	G	.	.	LowGQX	.	GT	./.
chr1	40872497	.	G	.	.	LowGQX	END=40872500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40872501	.	A	.	.	LowGQX	.	GT	./.
chr1	40872502	.	G	.	.	LowGQX	END=40872503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40872504	.	C	.	.	LowGQX	.	GT	./.
chr1	40872505	.	A	.	.	LowGQX	END=40872506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40872507	.	T	.	.	LowGQX	.	GT	./.
chr1	40872508	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40872509	.	A	.	.	LowGQX	END=40872543	GT	./.
chr1	40874318	.	G	.	.	LowGQX	END=40874320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40874321	.	A	.	.	LowGQX	END=40874417	GT	./.
chr1	40875419	.	C	.	.	LowGQX	END=40875518	GT	./.
chr1	40878682	.	T	.	.	LowGQX	END=40878683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40878684	.	A	.	.	LowGQX	END=40878685	GT	./.
chr1	40878686	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40878687	.	G	.	.	LowGQX	.	GT	./.
chr1	40878688	.	A	.	.	LowGQX	END=40878694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40878695	.	A	.	.	LowGQX	.	GT	./.
chr1	40878696	.	A	.	.	LowGQX	END=40878699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40878700	.	G	.	.	LowGQX	.	GT	./.
chr1	40878701	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40878702	.	C	.	.	LowGQX	.	GT	./.
chr1	40878703	.	A	.	.	LowGQX	END=40878707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40878708	.	G	.	.	LowGQX	.	GT	./.
chr1	40878709	.	A	.	.	LowGQX	END=40878715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40878716	.	G	.	.	LowGQX	.	GT	./.
chr1	40878717	.	G	.	.	LowGQX	END=40878725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40878726	.	A	.	.	LowGQX	.	GT	./.
chr1	40878727	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40878728	.	T	.	.	LowGQX	.	GT	./.
chr1	40878729	.	T	.	.	LowGQX	END=40878734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40878735	.	A	.	.	LowGQX	.	GT	./.
chr1	40878736	.	A	.	.	LowGQX	END=40878744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40878745	.	G	.	.	LowGQX	.	GT	./.
chr1	40878746	.	A	.	.	LowGQX	END=40878753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40878754	.	G	.	.	LowGQX	.	GT	./.
chr1	40878755	.	T	.	.	LowGQX	END=40878758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40878759	.	T	.	.	LowGQX	END=40878760	GT	./.
chr1	40878761	.	A	.	.	LowGQX	END=40878767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40878768	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	40878769	.	A	.	.	LowGQX	END=40878774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40878775	.	G	.	.	LowGQX	.	GT	./.
chr1	40878776	.	T	.	.	LowGQX	END=40878778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40878779	.	G	.	.	LowGQX	.	GT	./.
chr1	40878780	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40878781	.	T	.	.	LowGQX	END=40878782	GT	./.
chr1	40878783	.	G	.	.	LowGQX	END=40878792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40878793	.	G	T	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	40878794	.	C	.	.	LowGQX	END=40878802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40878803	.	G	T	7.08	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=3.54;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,1:2:3.01:36,3,0:60:3:0.500
chr1	40878804	.	A	.	.	LowGQX	END=40878807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40878808	.	C	.	.	LowGQX	.	GT	./.
chr1	40878809	.	C	.	.	LowGQX	END=40878812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	40878813	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	40878814	.	G	.	.	LowGQX	END=40878821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40878822	.	A	.	.	LowGQX	.	GT	./.
chr1	40878823	.	T	.	.	LowGQX	END=40878825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40878826	.	T	.	.	LowGQX	.	GT	./.
chr1	40878827	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40878828	.	G	.	.	LowGQX	.	GT	./.
chr1	40878829	.	T	.	.	LowGQX	END=40878833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40878834	.	G	.	.	LowGQX	.	GT	./.
chr1	40879822	.	T	.	.	LowGQX	END=40879921	GT	./.
chr1	40880942	.	A	.	.	LowGQX	END=40880946	GT	./.
chr1	40880947	.	C	.	.	LowGQX	END=40881001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40881002	.	T	.	.	LowGQX	.	GT	./.
chr1	40881003	.	T	.	.	LowGQX	END=40881055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40881846	.	A	.	.	LowGQX	END=40882027	GT	./.
chr1	40882450	.	A	.	.	LowGQX	END=40882770	GT	./.
chr1	40887646	.	A	.	.	LowGQX	END=40887775	GT	./.
chr1	40916633	.	C	.	.	LowGQX	END=40916760	GT	./.
chr1	40919868	.	T	.	.	LowGQX	END=40919967	GT	./.
chr1	40922566	.	C	.	.	LowGQX	END=40922745	GT	./.
chr1	40922881	.	T	.	.	LowGQX	END=40923113	GT	./.
chr1	40928091	.	A	.	.	LowGQX	END=40928625	GT	./.
chr1	40928626	.	C	.	.	LowGQX	END=40928663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928664	.	A	.	.	LowGQX	.	GT	./.
chr1	40928665	.	T	.	.	LowGQX	END=40928672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928673	.	G	.	.	LowGQX	.	GT	./.
chr1	40928674	.	T	.	.	LowGQX	END=40928677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928678	.	G	.	.	LowGQX	.	GT	./.
chr1	40928679	.	G	.	.	LowGQX	END=40928681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928682	.	A	.	.	LowGQX	END=40928683	GT	./.
chr1	40928684	.	C	.	.	LowGQX	END=40928686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928687	.	T	.	.	LowGQX	.	GT	./.
chr1	40928688	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928689	.	A	.	.	LowGQX	END=40928691	GT	./.
chr1	40928692	.	C	.	.	LowGQX	END=40928700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928701	.	T	.	.	LowGQX	.	GT	./.
chr1	40928702	.	C	.	.	LowGQX	END=40928705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928706	.	T	.	.	LowGQX	.	GT	./.
chr1	40928707	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928708	.	C	.	.	LowGQX	.	GT	./.
chr1	40928709	.	T	.	.	LowGQX	END=40928712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928713	.	C	.	.	LowGQX	.	GT	./.
chr1	40928714	.	A	.	.	LowGQX	END=40928718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928719	.	A	.	.	LowGQX	END=40928720	GT	./.
chr1	40928721	.	A	.	.	LowGQX	END=40928750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928751	.	T	.	.	LowGQX	.	GT	./.
chr1	40928752	.	A	.	.	LowGQX	END=40928781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928782	.	A	.	.	LowGQX	END=40928783	GT	./.
chr1	40928784	.	T	.	.	LowGQX	END=40928789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928790	.	G	.	.	LowGQX	.	GT	./.
chr1	40928791	.	A	.	.	LowGQX	END=40928793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928794	.	C	.	.	LowGQX	.	GT	./.
chr1	40928795	.	A	.	.	LowGQX	END=40928801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928802	.	G	.	.	LowGQX	.	GT	./.
chr1	40928803	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928804	.	G	.	.	LowGQX	.	GT	./.
chr1	40928805	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928806	.	A	.	.	LowGQX	.	GT	./.
chr1	40928807	.	C	.	.	LowGQX	END=40928809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928810	.	A	.	.	LowGQX	.	GT	./.
chr1	40928811	.	T	.	.	LowGQX	END=40928818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928819	.	A	.	.	LowGQX	END=40928820	GT	./.
chr1	40928821	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928822	.	A	.	.	LowGQX	.	GT	./.
chr1	40928823	.	A	.	.	LowGQX	END=40928828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928829	.	T	.	.	LowGQX	END=40928830	GT	./.
chr1	40928831	.	C	.	.	LowGQX	END=40928834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928835	.	C	.	.	LowGQX	.	GT	./.
chr1	40928836	.	A	.	.	LowGQX	END=40928846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928847	.	A	.	.	LowGQX	END=40928850	GT	./.
chr1	40928851	.	G	.	.	LowGQX	END=40928852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928853	.	G	.	.	LowGQX	END=40928854	GT	./.
chr1	40928855	.	T	.	.	LowGQX	END=40928866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928867	.	G	.	.	LowGQX	.	GT	./.
chr1	40928868	.	A	.	.	LowGQX	END=40928870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928871	.	C	.	.	LowGQX	.	GT	./.
chr1	40928872	.	C	.	.	LowGQX	END=40928874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928875	.	A	.	.	LowGQX	END=40928876	GT	./.
chr1	40928877	.	G	.	.	LowGQX	END=40928883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928884	.	G	.	.	LowGQX	.	GT	./.
chr1	40928885	.	A	.	.	LowGQX	END=40928919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40928920	.	A	.	.	LowGQX	END=40929263	GT	./.
chr1	40944982	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	40944983	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	40944984	.	T	.	.	LowGQX	END=40944993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	40944994	.	T	.	.	LowGQX	END=40945003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	40945004	.	G	.	.	PASS	END=40945005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	40945006	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	40945007	.	G	.	.	PASS	END=40945008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	40945009	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	40945010	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	40945011	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	40945012	.	C	.	.	PASS	END=40945015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	40945016	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	40945017	.	C	.	.	PASS	END=40945033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	40945034	.	A	.	.	PASS	END=40945045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	40945046	.	C	.	.	PASS	END=40945055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	40945056	.	C	.	.	PASS	END=40945067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	40945068	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:60
chr1	40945069	.	G	.	.	PASS	END=40945083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	40945084	.	G	.	.	PASS	END=40945094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	40945095	.	A	.	.	PASS	END=40945102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	40945103	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:60:60
chr1	40945104	.	A	.	.	PASS	END=40945125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	40945126	.	G	.	.	PASS	END=40945162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr1	40947431	.	C	.	.	LowGQX	END=40947530	GT	./.
chr1	40954708	.	G	.	.	LowGQX	END=40954888	GT	./.
chr1	40955148	.	G	.	.	LowGQX	END=40955298	GT	./.
chr1	40960591	.	A	.	.	LowGQX	END=40961088	GT	./.
chr1	40961089	.	C	.	.	LowGQX	END=40961124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40961125	.	A	.	.	LowGQX	.	GT	./.
chr1	40961126	.	C	.	.	LowGQX	END=40961279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40961280	.	A	.	.	LowGQX	END=40961301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	40961302	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	40961303	.	T	.	.	LowGQX	END=40961314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	40961315	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	40961316	.	G	.	.	LowGQX	END=40961432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	40961433	.	A	.	.	LowGQX	END=40961733	GT	./.
chr1	40980215	.	C	.	.	PASS	END=40980249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	40980250	.	G	.	.	PASS	END=40980270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	40980271	.	G	.	.	PASS	END=40980304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	40980305	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:48:60
chr1	40980306	.	C	.	.	PASS	END=40980332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	40980333	.	T	.	.	PASS	END=40980343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	40980344	.	T	.	.	PASS	END=40980345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	40980346	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:35:60
chr1	40980347	.	C	.	.	PASS	END=40980375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	40980376	.	G	.	.	PASS	END=40980406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	40980407	.	A	.	.	PASS	END=40980430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	40980431	.	C	.	.	PASS	END=40980452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	40980453	.	A	.	.	PASS	END=40980470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	40980471	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:38:60
chr1	40980472	.	C	.	.	PASS	END=40980517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	40980518	.	A	.	.	PASS	END=40980530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	40980531	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:15:60
chr1	40980532	.	T	.	.	PASS	END=40980540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	40980541	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chr1	40980542	.	A	.	.	PASS	END=40980557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	40980558	.	G	.	.	PASS	END=40980560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:84:60
chr1	40980561	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:45:60
chr1	40980562	.	A	.	.	PASS	END=40980572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	40980573	.	C	.	.	PASS	END=40980579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr1	40980580	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:48:60
chr1	40980581	.	T	.	.	PASS	END=40980591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	40980592	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:33:60
chr1	40980593	.	T	.	.	PASS	END=40980625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	40980626	.	C	.	.	PASS	END=40980675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	40980676	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:71:60
chr1	40980677	.	T	.	.	PASS	END=40980821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	40980822	.	C	.	.	PASS	END=40980857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	40980858	.	C	.	.	PASS	END=40980907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	40980908	.	G	.	.	PASS	END=40980968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	40980969	.	G	.	.	PASS	END=40980975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	40980976	.	G	.	.	PASS	END=40981016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	40981017	.	T	.	.	PASS	END=40981126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	40981127	.	G	.	.	PASS	END=40981179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	40981180	.	T	.	.	PASS	END=40981275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	40981276	.	T	.	.	PASS	END=40981308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	40981309	.	C	.	.	PASS	END=40981310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	40981311	.	G	.	.	PASS	END=40981340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	40998797	.	C	.	.	LowGQX	END=40998896	GT	./.
chr1	41006256	.	A	.	.	LowGQX	END=41006337	GT	./.
chr1	41006338	.	G	.	.	LowGQX	END=41006386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41007285	.	A	.	.	LowGQX	END=41007384	GT	./.
chr1	41010027	.	T	.	.	LowGQX	END=41010128	GT	./.
chr1	41010129	.	T	.	.	LowGQX	END=41010167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41010168	.	C	.	.	LowGQX	.	GT	./.
chr1	41010169	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41010170	.	C	.	.	LowGQX	.	GT	./.
chr1	41010171	.	C	.	.	LowGQX	END=41010175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41010176	.	A	.	.	LowGQX	.	GT	./.
chr1	41010177	.	C	.	.	LowGQX	END=41010178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41010179	.	A	.	.	LowGQX	.	GT	./.
chr1	41010180	.	T	.	.	LowGQX	END=41010187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41010188	.	T	.	.	LowGQX	END=41010189	GT	./.
chr1	41010190	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41012232	.	A	.	.	LowGQX	END=41013134	GT	./.
chr1	41092138	.	G	.	.	PASS	END=41092160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	41092161	.	C	.	.	PASS	END=41092196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	41092197	.	A	.	.	PASS	END=41092221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	41092222	.	G	.	.	PASS	END=41092341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	41092342	.	C	.	.	PASS	END=41092366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	41092367	.	T	.	.	PASS	END=41092384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	41092385	.	T	.	.	PASS	END=41092423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	41092424	.	G	.	.	PASS	END=41092452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	41094431	.	C	.	.	PASS	END=41094458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	41094459	.	C	.	.	PASS	END=41094511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	41094512	.	A	.	.	PASS	END=41094602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	41094603	.	T	.	.	PASS	END=41094621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	41094622	.	C	.	.	PASS	END=41094642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	41094643	.	G	.	.	PASS	END=41094652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	41094653	.	G	.	.	PASS	END=41094672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	41094892	.	G	.	.	PASS	END=41094909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	41094910	.	C	.	.	PASS	END=41094936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	41094937	.	C	.	.	PASS	END=41094993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	41094994	.	C	.	.	PASS	END=41095060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	41095061	.	G	.	.	PASS	END=41095084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	41095085	.	A	.	.	PASS	END=41095095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	41098690	.	C	.	.	PASS	END=41098703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	41098704	.	C	.	.	PASS	END=41098732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	41098733	.	A	.	.	PASS	END=41098747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	41098748	.	T	.	.	PASS	END=41098853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	41098854	.	C	.	.	PASS	END=41098883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	41098884	.	G	.	.	PASS	END=41098898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	41098899	.	G	.	.	PASS	END=41098904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	41101537	.	A	.	.	PASS	END=41101560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	41101561	.	G	.	.	PASS	END=41101570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	41101571	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:121:99:60
chr1	41101572	.	A	G	1453.42	PASS	BaseQRankSum=3.571;DP=121;Dels=0.00;FS=8.103;HRun=0;HaplotypeScore=19.0966;MQ=60;MQ0=0;MQRankSum=-0.816;QD=12.01;ReadPosRankSum=0.353;SB=-192.91	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:65,55:121:99:1483,0,1634:60:99:0.458
chr1	41101573	.	C	.	.	PASS	END=41101586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	41101587	.	C	.	.	PASS	END=41101627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	41101628	.	A	.	.	PASS	END=41101729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	41101730	.	C	.	.	PASS	END=41101759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	41101760	.	G	.	.	PASS	END=41101780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	41107330	.	C	.	.	PASS	END=41107347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	41107348	.	A	C	92.53	LowQD;SB	BaseQRankSum=-4.126;DP=87;Dels=0.00;FS=33.961;HRun=5;HaplotypeScore=63.5710;MQ=60;MQ0=0;MQRankSum=-0.326;QD=1.06;ReadPosRankSum=2.726;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:48,38:87:99:123,0,845:60:93:0.442
chr1	41107349	.	C	.	.	PASS	END=41107359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	41107360	.	T	C	1085.55	PASS	BaseQRankSum=3.653;DP=100;Dels=0.00;FS=7.066;HRun=0;HaplotypeScore=105.5845;MQ=60;MQ0=0;MQRankSum=-0.618;QD=10.86;ReadPosRankSum=0.274;SB=-568.05	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:53,42:100:99:1116,0,800:60:99:0.442
chr1	41107361	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:100:99:60
chr1	41107362	.	A	.	144.23	PASS	DP=100;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:79:100:99:60:99
chr1	41107363	.	T	.	.	PASS	END=41107382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	41107383	.	G	.	.	PASS	END=41107397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	41107398	.	A	.	.	PASS	END=41107416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	41107417	.	G	.	.	PASS	END=41107473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	41107474	.	C	.	.	PASS	END=41107541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr1	41107542	.	C	.	.	PASS	END=41107561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	41107562	.	C	.	.	PASS	END=41107595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	41107596	.	A	.	.	PASS	END=41107611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	41107612	.	C	G	1369.04	PASS	BaseQRankSum=1.535;DP=109;Dels=0.00;FS=2.948;HRun=2;HaplotypeScore=17.1477;MQ=60;MQ0=0;MQRankSum=-0.516;QD=12.56;ReadPosRankSum=0.058;SB=-87.87	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:61,48:109:99:1399,0,1845:60:99:0.440
chr1	41107613	.	A	.	.	PASS	END=41107626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	41107627	.	C	.	.	PASS	END=41107648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	41157295	.	T	.	.	LowGQX	END=41157489	GT	./.
chr1	41157490	.	C	.	.	LowGQX	END=41157513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157514	.	T	.	.	LowGQX	.	GT	./.
chr1	41157515	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157516	.	C	.	.	LowGQX	.	GT	./.
chr1	41157517	.	T	.	.	LowGQX	END=41157518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157519	.	T	.	.	LowGQX	.	GT	./.
chr1	41157520	.	T	.	.	LowGQX	END=41157525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157526	.	A	.	.	LowGQX	.	GT	./.
chr1	41157527	.	C	.	.	LowGQX	END=41157529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157530	.	C	.	.	LowGQX	END=41157531	GT	./.
chr1	41157532	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157533	.	A	.	.	LowGQX	.	GT	./.
chr1	41157534	.	G	.	.	LowGQX	END=41157535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157536	.	A	.	.	LowGQX	.	GT	./.
chr1	41157537	.	G	.	.	LowGQX	END=41157542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157543	.	T	.	.	LowGQX	.	GT	./.
chr1	41157544	.	G	.	.	LowGQX	END=41157552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157553	.	C	.	.	LowGQX	.	GT	./.
chr1	41157554	.	G	.	.	LowGQX	END=41157556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157557	.	A	.	.	LowGQX	.	GT	./.
chr1	41157558	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157559	.	T	.	.	LowGQX	END=41157560	GT	./.
chr1	41157561	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157562	.	C	.	.	LowGQX	.	GT	./.
chr1	41157563	.	T	.	.	LowGQX	END=41157568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157569	.	A	.	.	LowGQX	.	GT	./.
chr1	41157570	.	G	.	.	LowGQX	END=41157574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157575	.	A	.	.	LowGQX	END=41157576	GT	./.
chr1	41157577	.	A	.	.	LowGQX	END=41157580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157581	.	A	.	.	LowGQX	.	GT	./.
chr1	41157582	.	A	.	.	LowGQX	END=41157596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157597	.	A	.	.	LowGQX	.	GT	./.
chr1	41157598	.	G	.	.	LowGQX	END=41157599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157600	.	G	.	.	LowGQX	.	GT	./.
chr1	41157601	.	G	.	.	LowGQX	END=41157602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157603	.	A	.	.	LowGQX	.	GT	./.
chr1	41157604	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157605	.	C	.	.	LowGQX	.	GT	./.
chr1	41157606	.	G	.	.	LowGQX	END=41157607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157608	.	T	.	.	LowGQX	.	GT	./.
chr1	41157609	.	T	.	.	LowGQX	END=41157615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157616	.	T	.	.	LowGQX	.	GT	./.
chr1	41157617	.	T	.	.	LowGQX	END=41157619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157620	.	C	.	.	LowGQX	.	GT	./.
chr1	41157621	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157622	.	A	.	.	LowGQX	.	GT	./.
chr1	41157623	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157624	.	A	.	.	LowGQX	.	GT	./.
chr1	41157625	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157626	.	A	.	.	LowGQX	END=41157629	GT	./.
chr1	41157630	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157631	.	A	.	.	LowGQX	.	GT	./.
chr1	41157632	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157633	.	T	.	.	LowGQX	.	GT	./.
chr1	41157634	.	T	.	.	LowGQX	END=41157639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41157640	.	C	.	.	LowGQX	END=41157681	GT	./.
chr1	41204514	.	A	.	.	LowGQX	END=41204622	GT	./.
chr1	41213192	.	G	.	.	LowGQX	END=41213213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41213214	.	C	.	.	LowGQX	.	GT	./.
chr1	41213215	.	C	.	.	LowGQX	END=41213223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41213224	.	G	.	.	LowGQX	.	GT	./.
chr1	41213225	.	A	.	.	LowGQX	END=41213231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41213232	.	A	.	.	LowGQX	.	GT	./.
chr1	41213233	.	C	.	.	LowGQX	END=41213234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41213235	.	G	.	.	LowGQX	.	GT	./.
chr1	41213236	.	G	.	.	LowGQX	END=41213248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41213249	.	A	.	.	LowGQX	.	GT	./.
chr1	41213250	.	G	.	.	LowGQX	END=41213262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41213263	.	G	.	.	LowGQX	.	GT	./.
chr1	41213264	.	A	.	.	LowGQX	END=41213291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41215243	.	A	.	.	LowGQX	END=41215360	GT	./.
chr1	41218821	.	A	.	.	LowGQX	END=41218920	GT	./.
chr1	41219963	.	T	.	.	LowGQX	END=41220072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41220073	.	T	.	.	LowGQX	END=41220122	GT	./.
chr1	41222955	.	A	.	.	PASS	END=41222960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	41222961	.	G	.	.	PASS	END=41222985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	41222986	.	A	.	.	PASS	END=41223059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	41223780	.	T	.	.	LowGQX	END=41223968	GT	./.
chr1	41228558	.	A	.	.	LowGQX	END=41228569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41228570	.	T	.	.	LowGQX	.	GT	./.
chr1	41228571	.	G	.	.	LowGQX	END=41228642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41228643	.	C	.	.	LowGQX	.	GT	./.
chr1	41228644	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41228645	.	A	.	.	LowGQX	.	GT	./.
chr1	41228646	.	G	.	.	LowGQX	END=41228673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41228674	.	A	.	.	LowGQX	.	GT	./.
chr1	41228675	.	T	.	.	LowGQX	END=41228679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41228680	.	C	.	.	LowGQX	END=41228692	GT	./.
chr1	41228693	.	A	.	.	LowGQX	END=41228720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41228985	.	T	.	.	LowGQX	END=41229118	GT	./.
chr1	41229119	.	A	.	.	LowGQX	END=41229121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41229122	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	41229123	.	A	.	.	LowGQX	END=41229146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41229147	.	T	.	.	LowGQX	.	GT	./.
chr1	41229148	.	A	.	.	LowGQX	END=41229161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41232266	.	A	.	.	LowGQX	END=41232432	GT	./.
chr1	41232568	.	C	.	.	LowGQX	END=41232574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41232575	.	C	.	.	LowGQX	.	GT	./.
chr1	41232576	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41232577	.	T	.	.	LowGQX	.	GT	./.
chr1	41232578	.	C	.	.	LowGQX	END=41232582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41232583	.	T	.	.	LowGQX	END=41232667	GT	./.
chr1	41235008	.	T	.	.	LowGQX	END=41235107	GT	./.
chr1	41236068	.	G	.	.	LowGQX	END=41236307	GT	./.
chr1	41236308	.	G	.	.	LowGQX	END=41236338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41236339	.	C	.	.	LowGQX	.	GT	./.
chr1	41236340	.	T	.	.	LowGQX	END=41236369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41236370	.	A	.	.	LowGQX	.	GT	./.
chr1	41236371	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41236372	.	C	.	.	LowGQX	.	GT	./.
chr1	41236373	.	C	.	.	LowGQX	END=41236381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41236382	.	A	.	.	LowGQX	.	GT	./.
chr1	41236383	.	G	.	.	LowGQX	END=41236389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41236390	.	C	.	.	LowGQX	.	GT	./.
chr1	41236391	.	A	.	.	LowGQX	END=41236433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41236434	.	G	.	.	LowGQX	.	GT	./.
chr1	41236435	.	C	.	.	LowGQX	END=41236458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41236459	.	C	.	.	LowGQX	.	GT	./.
chr1	41236460	.	A	.	.	LowGQX	END=41236461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41236462	.	C	.	.	LowGQX	.	GT	./.
chr1	41236463	.	C	.	.	LowGQX	END=41236492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41236493	.	G	.	.	LowGQX	.	GT	./.
chr1	41236494	.	C	.	.	LowGQX	END=41236500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41236501	.	G	.	.	LowGQX	END=41236502	GT	./.
chr1	41236503	.	G	.	.	LowGQX	END=41236508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41237053	.	G	.	.	LowGQX	END=41237157	GT	./.
chr1	41249715	.	C	.	.	LowGQX	END=41249895	GT	./.
chr1	41249896	.	G	.	.	LowGQX	END=41249903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41249904	.	C	.	.	PASS	END=41249908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	41249909	.	G	.	.	PASS	END=41249916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	41249917	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:21:60
chr1	41249918	.	C	.	.	PASS	END=41249931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	41249932	.	C	.	.	PASS	END=41249934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	41249935	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:48:60
chr1	41249936	.	C	.	.	PASS	END=41249937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	41249938	.	T	.	.	PASS	END=41249960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	41249961	.	G	.	.	PASS	END=41249988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	41249989	.	C	.	.	PASS	END=41250011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	41250012	.	C	.	.	PASS	END=41250035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	41250036	.	C	.	.	PASS	END=41250101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	41250102	.	T	.	.	PASS	END=41250130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	41282886	.	C	.	.	PASS	END=41282902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	41282903	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:75:60
chr1	41282904	.	A	.	.	PASS	END=41282918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	41282919	.	C	.	.	PASS	END=41282986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	41282987	.	A	.	.	PASS	END=41283012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	41283013	.	T	.	.	PASS	END=41283041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	41283042	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr1	41283043	.	C	.	.	PASS	END=41283057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	41283058	.	G	.	.	PASS	END=41283069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	41283070	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:60
chr1	41283071	.	G	.	.	PASS	END=41283076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:58
chr1	41283077	.	C	.	.	PASS	END=41283078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:57
chr1	41283785	.	G	.	.	PASS	END=41283820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	41283821	.	C	.	.	PASS	END=41283922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	41283923	.	G	.	.	PASS	END=41283971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	41283972	.	C	.	.	PASS	END=41283989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	41283990	.	A	.	.	PASS	END=41283991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:65:60
chr1	41283992	.	C	.	.	PASS	END=41284012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	41284013	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:63:60
chr1	41284126	.	G	.	.	PASS	END=41284136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	41284137	.	G	.	.	PASS	END=41284177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	41284178	.	C	.	.	PASS	END=41284195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	41284196	.	C	.	.	PASS	END=41284215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	41284216	.	C	.	.	PASS	END=41284349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	41284350	.	A	.	.	PASS	END=41284365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	41284366	.	G	C	949.72	PASS	BaseQRankSum=-1.683;DP=89;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=5.7240;MQ=60;MQ0=0;MQRankSum=-0.161;QD=10.67;ReadPosRankSum=-2.120;SB=-380.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:48,41:89:99:980,0,1241:60:99:0.461
chr1	41284367	.	C	.	.	PASS	END=41284403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	41284968	.	C	.	.	PASS	END=41284972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	41284973	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:1:60
chr1	41284974	.	G	.	.	PASS	END=41284977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	41284978	.	G	.	.	PASS	END=41284979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	41284980	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:3:60
chr1	41284981	.	A	.	.	PASS	END=41284988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	41284989	.	C	.	.	PASS	END=41285010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	41285011	.	C	.	.	PASS	END=41285030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	41285031	.	G	.	.	PASS	END=41285045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:60
chr1	41285046	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:54:60
chr1	41285047	.	T	.	.	PASS	END=41285086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	41285087	.	T	C	439.68	PASS	BaseQRankSum=0.397;DP=50;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.8302;MQ=60;MQ0=0;MQRankSum=0.071;QD=8.79;ReadPosRankSum=1.780;SB=-281.26	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:29,20:50:99:470,0,683:60:99:0.408
chr1	41285088	.	G	.	.	PASS	END=41285094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	41285095	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:59:60
chr1	41285096	.	C	.	.	PASS	END=41285106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	41285107	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:50:60
chr1	41285108	.	C	.	.	PASS	END=41285116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	41285117	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:48:60
chr1	41285118	.	T	.	.	PASS	END=41285119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	41285120	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:36:60
chr1	41285121	.	G	.	.	PASS	END=41285143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	41285144	.	G	.	.	PASS	END=41285154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:60
chr1	41285155	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:12:60
chr1	41285156	.	T	.	.	PASS	END=41285166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	41285167	.	C	.	.	PASS	END=41285170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	41285171	.	C	A	213.06	PASS	BaseQRankSum=0.454;DP=19;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-0.206;QD=11.21;ReadPosRankSum=0.537;SB=-122.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:8,11:19:99:243,0,216:60:99:0.579
chr1	41285172	.	C	.	.	PASS	END=41285191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	41285192	.	T	.	.	PASS	END=41285195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	41285496	.	C	.	.	PASS	END=41285534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	41285535	.	T	.	.	PASS	END=41285612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	41285613	.	G	.	.	PASS	END=41285666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	41285667	.	C	.	.	PASS	END=41285708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	41285786	.	A	.	.	PASS	END=41285812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	41285813	.	C	.	.	PASS	END=41285830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	41285831	.	C	.	.	PASS	END=41285934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	41285935	.	A	.	.	PASS	END=41285967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	41285968	.	G	.	.	PASS	END=41285979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	41285980	.	C	.	.	PASS	END=41285983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	41287935	.	G	.	.	PASS	END=41287949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	41287950	.	C	.	.	PASS	END=41288015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	41288016	.	A	.	.	PASS	END=41288060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	41288061	.	C	.	.	PASS	END=41288076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	41288077	.	A	.	.	PASS	END=41288091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	41288092	.	T	G	26.23	LowGQX;LowQD;SB	BaseQRankSum=-1.608;DP=46;Dels=0.00;FS=45.826;HRun=5;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=-0.014;QD=0.57;ReadPosRankSum=-3.695;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,8:46:56.21:56,0,1010:60:26:0.174
chr1	41288093	.	G	.	.	PASS	END=41288097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	41288098	.	T	G	9.88	LowGQX;LowQD;SB	BaseQRankSum=0.270;DP=42;Dels=0.00;FS=42.861;HRun=5;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=0.304;QD=0.24;ReadPosRankSum=-1.789;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,7:42:39.40:39,0,895:60:10:0.167
chr1	41288099	.	G	.	.	PASS	END=41288101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	41288102	.	T	.	99.21	PASS	DP=38;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:30:38:69.21:60:69
chr1	41288103	.	G	.	.	PASS	END=41288108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	41288109	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:75:60
chr1	41288110	.	T	.	.	PASS	END=41288125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	41289718	.	G	.	.	PASS	END=41289727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	41289728	.	G	.	.	PASS	END=41289729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	41289730	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:46:60
chr1	41289731	.	A	.	.	PASS	END=41289748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	41289749	.	G	.	.	PASS	END=41289761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	41289762	.	C	.	.	PASS	END=41289802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	41289803	.	G	.	.	PASS	END=41289831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	41289832	.	G	.	.	PASS	END=41289967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	41289968	.	T	.	.	PASS	END=41289981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	41292279	.	C	.	.	LowGQX	END=41292378	GT	./.
chr1	41296705	.	A	.	4.58	LowGQX	DP=13;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:9:13:0.01:60:0
chr1	41296706	.	C	.	.	PASS	END=41296710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	41296711	.	A	.	.	LowGQX	END=41296712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:18:60
chr1	41296713	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr1	41296714	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr1	41296715	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	41296716	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr1	41296717	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	41296718	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:36:60
chr1	41296719	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	41296720	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:12:60
chr1	41296721	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	41296722	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr1	41296723	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:36:60
chr1	41296724	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr1	41296725	.	T	.	.	LowGQX	END=41296726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	41296727	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	41296728	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	41296729	.	T	.	.	PASS	END=41296731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	41296732	.	C	.	.	PASS	END=41296735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	41296736	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:57:60
chr1	41296737	.	A	.	28.54	LowGQX	DP=24;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:19:24:2.34:60:2
chr1	41296738	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr1	41296739	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:21:60
chr1	41296740	.	C	.	.	PASS	END=41296743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	41296744	.	C	.	.	PASS	END=41296747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	41296748	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:21:60
chr1	41296749	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:72:60
chr1	41296750	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:54:60
chr1	41296751	.	G	.	.	PASS	END=41296756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	41296757	.	A	.	.	PASS	END=41296758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	41296759	.	C	.	.	PASS	END=41296760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	41296761	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:57:60
chr1	41296762	.	G	.	.	PASS	END=41296763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	41296764	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:51:60
chr1	41296765	.	G	.	.	PASS	END=41296772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	41296773	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:42:60
chr1	41296774	.	A	.	.	PASS	END=41296778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	41296779	.	G	.	.	PASS	END=41296781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	41296782	.	T	.	.	PASS	END=41296790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	41296791	.	G	.	.	PASS	END=41296805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	41296806	.	G	.	.	PASS	END=41296827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:78:60
chr1	41296828	.	T	G	753.08	PASS	BaseQRankSum=2.692;DP=68;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=8.5750;MQ=60;MQ0=0;MQRankSum=1.196;QD=11.07;ReadPosRankSum=0.141;SB=-393.03	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,34:68:99:783,0,757:60:99:0.500
chr1	41296829	.	C	.	.	PASS	END=41296939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:90:60
chr1	41296940	.	G	.	.	PASS	END=41296951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	41296952	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:76:60
chr1	41296953	.	T	.	.	PASS	END=41296977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	41296978	.	T	.	.	PASS	END=41296993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	41296994	.	T	.	.	PASS	END=41296997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	41296998	.	T	.	.	PASS	END=41296999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	41297000	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:40:60
chr1	41297001	.	G	.	.	PASS	END=41297002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	41297003	.	T	.	.	PASS	END=41297004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	41297005	.	G	.	.	PASS	END=41297014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	41297015	.	T	.	.	PASS	END=41297027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	41298635	.	G	.	.	PASS	END=41298651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	41298652	.	T	C	2543.70	PASS	BaseQRankSum=0.410;DP=203;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=24.7151;MQ=60;MQ0=0;MQRankSum=-1.571;QD=12.53;ReadPosRankSum=0.345;SB=-1142.82	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:101,102:203:99:2574,0,2483:60:99:0.502
chr1	41298653	.	G	.	.	PASS	END=41298770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	41298771	.	C	.	.	PASS	END=41298792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	41298793	.	T	.	.	PASS	END=41298820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	41298821	.	T	.	.	PASS	END=41298836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	41300588	.	A	.	.	PASS	END=41300628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	41300629	.	C	.	.	PASS	END=41300725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	41300726	.	A	.	.	PASS	END=41300791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	41300792	.	G	.	.	PASS	END=41300821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	41303286	.	A	.	.	PASS	END=41303310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	41303311	.	C	.	.	PASS	END=41303329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	41303330	.	C	.	.	PASS	END=41303453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	41303454	.	G	.	.	PASS	END=41303477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	41303478	.	A	.	.	PASS	END=41303479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	41303480	.	G	.	.	PASS	END=41303483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	41303484	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:54:60
chr1	41303485	.	G	.	.	PASS	END=41303492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	41303493	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:63:60
chr1	41303494	.	G	.	.	PASS	END=41303496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	41303497	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:48:60
chr1	41303498	.	A	.	.	PASS	END=41303506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	41303507	.	A	.	.	PASS	END=41303509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	41303510	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:63:60
chr1	41303511	.	C	.	.	PASS	END=41303516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	41303517	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:63:60
chr1	41303932	.	C	.	.	PASS	END=41303964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:78:60
chr1	41303965	.	G	.	.	PASS	END=41303977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	41303978	.	C	.	.	PASS	END=41304003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	41304004	.	C	.	.	PASS	END=41304124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	41304125	.	A	.	.	PASS	END=41304151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	41304152	.	A	.	.	PASS	END=41304169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	41304170	.	G	.	.	PASS	END=41304210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	41304211	.	C	.	.	PASS	END=41304245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	41304246	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:99:60
chr1	41327232	.	G	.	.	LowGQX	END=41327717	GT	./.
chr1	41327718	.	C	.	.	LowGQX	END=41327801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41447613	.	A	.	.	LowGQX	END=41447712	GT	./.
chr1	41448949	.	G	.	.	LowGQX	END=41449130	GT	./.
chr1	41450491	.	A	.	.	LowGQX	END=41450555	GT	./.
chr1	41450556	.	T	.	.	LowGQX	END=41450665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41453042	.	A	.	.	LowGQX	END=41453056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41453057	.	C	.	.	LowGQX	END=41453146	GT	./.
chr1	41454264	.	A	.	.	LowGQX	END=41454384	GT	./.
chr1	41456775	.	A	.	.	LowGQX	END=41456864	GT	./.
chr1	41456865	.	A	.	.	LowGQX	END=41456867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41456868	.	C	.	.	LowGQX	END=41456869	GT	./.
chr1	41456870	.	A	.	.	LowGQX	END=41456871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41456872	.	C	.	.	LowGQX	.	GT	./.
chr1	41456873	.	C	.	.	LowGQX	END=41456877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41456878	.	T	.	.	LowGQX	.	GT	./.
chr1	41456879	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41456880	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	41456881	.	T	.	.	LowGQX	END=41456884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41456885	.	C	.	.	LowGQX	END=41456887	GT	./.
chr1	41456888	.	G	.	.	LowGQX	END=41456895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41456896	.	A	.	.	LowGQX	.	GT	./.
chr1	41456897	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41456898	.	G	.	.	LowGQX	END=41456899	GT	./.
chr1	41456900	.	C	.	.	LowGQX	END=41456903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41456904	.	G	.	.	LowGQX	END=41456906	GT	./.
chr1	41456907	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41456908	.	T	.	.	LowGQX	.	GT	./.
chr1	41456909	.	T	.	.	LowGQX	END=41456914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41456915	.	G	.	.	LowGQX	END=41456916	GT	./.
chr1	41456917	.	T	.	.	LowGQX	END=41456918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41456919	.	T	.	.	LowGQX	END=41456920	GT	./.
chr1	41456921	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41456922	.	T	.	.	LowGQX	.	GT	./.
chr1	41456923	.	A	.	.	LowGQX	END=41456927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41456928	.	T	.	.	LowGQX	.	GT	./.
chr1	41457428	.	T	.	.	LowGQX	END=41457467	GT	./.
chr1	41457468	.	C	.	.	LowGQX	END=41457527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41461587	.	A	.	.	LowGQX	END=41461792	GT	./.
chr1	41463064	.	A	.	.	LowGQX	END=41463143	GT	./.
chr1	41463144	.	C	.	.	LowGQX	END=41463145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41463146	.	T	.	.	LowGQX	.	GT	./.
chr1	41463147	.	T	.	.	LowGQX	END=41463150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41463151	.	G	.	.	LowGQX	END=41463152	GT	./.
chr1	41463153	.	T	.	.	LowGQX	END=41463169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41463170	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	41463171	.	G	.	.	LowGQX	END=41463198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41463199	.	G	.	.	LowGQX	.	GT	./.
chr1	41463200	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	41466696	.	T	.	.	LowGQX	END=41466782	GT	./.
chr1	41466783	.	G	.	.	LowGQX	END=41466802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41466803	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	41466804	.	C	.	.	LowGQX	END=41466806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41466807	.	C	.	.	LowGQX	.	GT	./.
chr1	41466808	.	C	.	.	LowGQX	END=41466814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41466815	.	T	.	.	LowGQX	.	GT	./.
chr1	41466816	.	T	.	.	LowGQX	END=41466825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41466826	.	T	.	.	LowGQX	.	GT	./.
chr1	41466827	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41466828	.	T	.	.	LowGQX	.	GT	./.
chr1	41466829	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41466830	.	G	.	.	LowGQX	.	GT	./.
chr1	41466831	.	G	.	.	LowGQX	END=41466848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41467830	.	A	.	.	LowGQX	END=41467869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41467870	.	C	.	.	LowGQX	.	GT	./.
chr1	41467871	.	A	.	.	LowGQX	END=41467879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41467880	.	A	.	.	LowGQX	.	GT	./.
chr1	41467881	.	A	.	.	LowGQX	END=41467890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41467891	.	T	.	.	LowGQX	.	GT	./.
chr1	41467892	.	T	.	.	LowGQX	END=41467900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41467901	.	T	.	.	LowGQX	.	GT	./.
chr1	41467902	.	C	.	.	LowGQX	END=41467905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41467906	.	A	.	.	LowGQX	END=41467907	GT	./.
chr1	41467908	.	C	.	.	LowGQX	END=41467910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41467911	.	A	.	.	LowGQX	.	GT	./.
chr1	41467912	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41467913	.	A	.	.	LowGQX	END=41467929	GT	./.
chr1	41468768	.	T	.	.	LowGQX	END=41468867	GT	./.
chr1	41471695	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41471696	.	T	.	.	LowGQX	.	GT	./.
chr1	41471697	.	T	.	.	LowGQX	END=41471701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41471702	.	A	.	.	LowGQX	.	GT	./.
chr1	41471703	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41471704	.	A	.	.	LowGQX	.	GT	./.
chr1	41471705	.	A	.	.	LowGQX	END=41471722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41471723	.	A	.	.	LowGQX	.	GT	./.
chr1	41471724	.	T	.	.	LowGQX	END=41471733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41471734	.	A	.	.	LowGQX	.	GT	./.
chr1	41471735	.	C	.	.	LowGQX	END=41471743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41471744	.	A	.	.	LowGQX	.	GT	./.
chr1	41471745	.	C	.	.	LowGQX	END=41471751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41471752	.	A	.	.	LowGQX	.	GT	./.
chr1	41471753	.	C	.	.	LowGQX	END=41471776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41471777	.	T	.	.	LowGQX	.	GT	./.
chr1	41471778	.	G	.	.	LowGQX	END=41471794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41473119	.	A	.	.	LowGQX	END=41473173	GT	./.
chr1	41473174	.	G	.	.	LowGQX	END=41473219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41474309	.	T	.	.	LowGQX	END=41474408	GT	./.
chr1	41474464	.	A	.	.	LowGQX	END=41474564	GT	./.
chr1	41475115	.	A	.	.	LowGQX	END=41475289	GT	./.
chr1	41475826	.	T	.	.	LowGQX	END=41475863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41475864	.	T	.	.	LowGQX	.	GT	./.
chr1	41475865	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41475866	.	C	.	.	LowGQX	END=41475867	GT	./.
chr1	41475868	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41475869	.	T	.	.	LowGQX	.	GT	./.
chr1	41475870	.	G	.	.	LowGQX	END=41475871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41475872	.	C	.	.	LowGQX	END=41475873	GT	./.
chr1	41475874	.	C	.	.	LowGQX	END=41475877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41475878	.	A	.	.	LowGQX	END=41475879	GT	./.
chr1	41475880	.	T	.	.	LowGQX	END=41475881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41475882	.	A	.	.	LowGQX	.	GT	./.
chr1	41475883	.	C	.	.	LowGQX	END=41475886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41475887	.	A	.	.	LowGQX	END=41475889	GT	./.
chr1	41475890	.	G	.	.	LowGQX	END=41475891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41475892	.	A	.	.	LowGQX	.	GT	./.
chr1	41475893	.	G	.	.	LowGQX	END=41475894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41475895	.	T	.	.	LowGQX	END=41475925	GT	./.
chr1	41481776	.	C	.	.	LowGQX	END=41481795	GT	./.
chr1	41481796	.	G	.	.	LowGQX	END=41481901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41481902	.	T	.	.	LowGQX	.	GT	./.
chr1	41482904	.	A	.	.	LowGQX	END=41483051	GT	./.
chr1	41483305	.	A	.	.	LowGQX	END=41483830	GT	./.
chr1	41485896	.	A	.	.	LowGQX	END=41486049	GT	./.
chr1	41486050	.	G	.	.	LowGQX	END=41486162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41486163	.	T	.	.	LowGQX	END=41486334	GT	./.
chr1	41493864	.	G	.	.	LowGQX	END=41493993	GT	./.
chr1	41494254	.	A	.	.	LowGQX	END=41494400	GT	./.
chr1	41499638	.	A	.	.	LowGQX	END=41499737	GT	./.
chr1	41503032	.	A	.	.	LowGQX	END=41503215	GT	./.
chr1	41512077	.	A	.	.	LowGQX	END=41512272	GT	./.
chr1	41514360	.	A	.	.	LowGQX	END=41514564	GT	./.
chr1	41536265	.	A	.	.	LowGQX	END=41536395	GT	./.
chr1	41540889	.	A	.	.	LowGQX	END=41540966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41540967	.	T	.	.	LowGQX	END=41541125	GT	./.
chr1	41578953	.	A	.	.	LowGQX	END=41579200	GT	./.
chr1	41582589	.	C	.	.	LowGQX	END=41582688	GT	./.
chr1	41608548	.	A	.	.	LowGQX	END=41608786	GT	./.
chr1	41617272	.	T	.	.	LowGQX	END=41617371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41618259	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41618260	.	C	.	.	LowGQX	.	GT	./.
chr1	41618261	.	T	.	.	LowGQX	END=41618266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41618267	.	C	.	.	LowGQX	.	GT	./.
chr1	41618268	.	C	.	.	LowGQX	END=41618269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41618270	.	C	.	.	LowGQX	.	GT	./.
chr1	41618271	.	C	.	.	LowGQX	END=41618289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41618290	.	G	.	.	LowGQX	END=41618358	GT	./.
chr1	41625350	.	G	.	.	LowGQX	END=41625449	GT	./.
chr1	41626456	.	T	.	.	LowGQX	END=41626608	GT	./.
chr1	41626965	.	C	.	.	LowGQX	END=41627119	GT	./.
chr1	41651749	.	T	.	.	LowGQX	END=41651794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41651795	.	T	.	.	LowGQX	.	GT	./.
chr1	41651796	.	T	.	.	LowGQX	END=41651848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41827591	.	C	.	.	LowGQX	END=41828016	GT	./.
chr1	41847287	.	G	.	.	LowGQX	END=41848101	GT	./.
chr1	41848102	.	C	.	.	LowGQX	END=41848155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41848156	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	41848157	.	C	.	.	LowGQX	END=41848165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41848166	.	A	.	.	LowGQX	.	GT	./.
chr1	41848167	.	C	.	.	LowGQX	END=41848173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41848174	.	C	.	.	LowGQX	.	GT	./.
chr1	41848175	.	C	.	.	LowGQX	END=41848180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41848181	.	A	.	.	LowGQX	END=41848182	GT	./.
chr1	41848183	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41848184	.	T	.	.	LowGQX	.	GT	./.
chr1	41848185	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41848186	.	G	.	.	LowGQX	END=41848189	GT	./.
chr1	41848190	.	T	.	.	LowGQX	END=41848192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41848193	.	A	.	.	LowGQX	.	GT	./.
chr1	41848194	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41848195	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	41848196	.	T	.	.	LowGQX	END=41848214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41848215	.	G	.	.	LowGQX	END=41848216	GT	./.
chr1	41848217	.	G	.	.	LowGQX	END=41848228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41848229	.	C	.	.	LowGQX	END=41848230	GT	./.
chr1	41848231	.	A	.	.	LowGQX	END=41848235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41848236	.	C	.	.	LowGQX	.	GT	./.
chr1	41848237	.	C	.	.	LowGQX	END=41848239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41848240	.	A	.	.	LowGQX	END=41848242	GT	./.
chr1	41848243	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41848244	.	A	.	.	LowGQX	.	GT	./.
chr1	41848245	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41848246	.	T	.	.	LowGQX	.	GT	./.
chr1	41848247	.	T	.	.	LowGQX	END=41848251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41848252	.	G	.	.	LowGQX	.	GT	./.
chr1	41848253	.	A	.	.	LowGQX	END=41848258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41848259	.	A	.	.	LowGQX	.	GT	./.
chr1	41848260	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41848261	.	G	.	.	LowGQX	END=41848262	GT	./.
chr1	41848263	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41848264	.	A	.	.	LowGQX	.	GT	./.
chr1	41848265	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41848266	.	G	.	.	LowGQX	END=41848272	GT	./.
chr1	41848273	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41848274	.	A	.	.	LowGQX	.	GT	./.
chr1	41848275	.	C	.	.	LowGQX	END=41848278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41848279	.	G	.	.	LowGQX	END=41848280	GT	./.
chr1	41848281	.	T	.	.	LowGQX	END=41848286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41848287	.	C	.	.	LowGQX	.	GT	./.
chr1	41848288	.	C	.	.	LowGQX	END=41848345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41848346	.	C	.	.	LowGQX	END=41848553	GT	./.
chr1	41944923	.	T	.	.	PASS	END=41944924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr1	41944925	.	A	.	.	PASS	END=41944926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	41944927	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:45:60
chr1	41944928	.	A	.	.	PASS	END=41944957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	41944958	.	T	.	.	PASS	END=41944972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	41944973	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:72:60
chr1	41944974	.	C	.	.	PASS	END=41944985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	41944986	.	C	.	.	PASS	END=41945006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	41945007	.	C	.	.	PASS	END=41945077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:93:60
chr1	41945078	.	C	.	.	PASS	END=41945103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	41945104	.	T	.	.	PASS	END=41945175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	41946371	.	C	.	.	LowGQX	END=41946454	GT	./.
chr1	41946455	.	G	.	.	LowGQX	END=41946459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41946460	.	A	.	.	LowGQX	.	GT	./.
chr1	41946461	.	T	.	.	LowGQX	END=41946470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41946764	.	A	.	.	PASS	END=41946788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	41946789	.	T	.	.	PASS	END=41946866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	41948094	.	C	.	.	PASS	END=41948304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	41949716	.	A	.	.	PASS	END=41949729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	41949730	.	A	.	.	PASS	END=41949755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	41949756	.	G	.	.	PASS	END=41949863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	41949864	.	C	.	.	PASS	END=41949876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	41950191	.	G	.	.	PASS	END=41950235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	41950236	.	G	.	.	PASS	END=41950289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	41950290	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:75:99:60
chr1	41976120	.	G	.	.	LowGQX	END=41976274	GT	./.
chr1	41976275	.	G	.	.	LowGQX	END=41976313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41976314	.	A	.	.	LowGQX	.	GT	./.
chr1	41976315	.	G	.	.	LowGQX	END=41976327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41976328	.	T	C	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	41976329	.	C	.	.	LowGQX	END=41976340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41976341	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	41976342	.	G	.	.	LowGQX	END=41976347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41976348	.	A	.	.	LowGQX	.	GT	./.
chr1	41976349	.	A	.	.	LowGQX	END=41976404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41976405	.	T	.	25.22	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.91:60:1
chr1	41976406	.	C	.	.	LowGQX	END=41976414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41976415	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	41976416	.	G	.	.	LowGQX	END=41976429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41976430	.	T	.	.	LowGQX	.	GT	./.
chr1	41976431	.	G	.	.	LowGQX	END=41976448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	41976449	.	T	.	.	LowGQX	END=41976939	GT	./.
chr1	41978485	.	A	.	.	LowGQX	END=41978772	GT	./.
chr1	41978773	.	G	.	.	LowGQX	END=41978824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41978825	.	C	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	41978826	.	G	.	.	LowGQX	END=41978878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	41978879	.	C	.	.	LowGQX	END=41979423	GT	./.
chr1	41984067	.	T	.	.	LowGQX	END=41984166	GT	./.
chr1	41990384	.	G	.	.	LowGQX	END=41990583	GT	./.
chr1	42041213	.	A	.	.	LowGQX	END=42041362	GT	./.
chr1	42045406	.	A	.	.	LowGQX	END=42045585	GT	./.
chr1	42045586	.	G	.	.	LowGQX	END=42045628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42045629	.	G	.	.	LowGQX	.	GT	./.
chr1	42045630	.	C	.	.	LowGQX	END=42045651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42045652	.	C	.	.	LowGQX	.	GT	./.
chr1	42045653	.	A	.	.	LowGQX	END=42045682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42045683	.	G	.	.	LowGQX	.	GT	./.
chr1	42045684	.	G	.	.	LowGQX	END=42045706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42045707	.	C	.	.	LowGQX	END=42045708	GT	./.
chr1	42045709	.	G	.	.	LowGQX	END=42045711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42045712	.	C	.	.	LowGQX	.	GT	./.
chr1	42045713	.	C	.	.	LowGQX	END=42045715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42045716	.	C	.	.	LowGQX	END=42045718	GT	./.
chr1	42045719	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42045720	.	T	.	.	LowGQX	END=42045722	GT	./.
chr1	42045723	.	C	.	.	LowGQX	END=42045736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42045737	.	A	.	.	LowGQX	END=42045824	GT	./.
chr1	42045825	.	T	.	.	LowGQX	END=42045832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42045833	.	A	.	.	LowGQX	.	GT	./.
chr1	42045834	.	C	.	.	LowGQX	END=42045842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42045843	.	G	.	.	LowGQX	END=42045844	GT	./.
chr1	42045845	.	G	.	.	LowGQX	END=42045859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42045860	.	G	.	.	LowGQX	.	GT	./.
chr1	42045861	.	C	.	.	LowGQX	END=42045898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42045899	.	T	.	.	LowGQX	.	GT	./.
chr1	42045900	.	C	.	.	LowGQX	END=42045926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42045927	.	G	.	.	LowGQX	.	GT	./.
chr1	42045928	.	G	.	.	LowGQX	END=42045938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42045939	.	C	.	.	LowGQX	.	GT	./.
chr1	42045940	.	T	.	.	LowGQX	END=42045952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42045953	.	G	.	.	LowGQX	.	GT	./.
chr1	42045954	.	A	.	.	LowGQX	END=42045972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42045973	.	A	.	.	LowGQX	END=42047129	GT	./.
chr1	42047130	.	G	.	.	LowGQX	END=42047175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42047176	.	G	.	.	LowGQX	.	GT	./.
chr1	42047177	.	G	.	.	LowGQX	END=42047180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42047181	.	A	.	.	LowGQX	.	GT	./.
chr1	42047182	.	C	.	.	LowGQX	END=42047184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42047185	.	T	.	.	LowGQX	.	GT	./.
chr1	42047186	.	G	.	.	LowGQX	END=42047191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42047192	.	T	.	.	LowGQX	.	GT	./.
chr1	42047193	.	G	.	.	LowGQX	END=42047205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42047206	.	A	.	.	LowGQX	.	GT	./.
chr1	42047207	.	T	.	.	LowGQX	END=42047212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42047213	.	A	.	.	LowGQX	.	GT	./.
chr1	42047214	.	C	.	.	LowGQX	END=42047218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42047219	.	A	.	.	LowGQX	.	GT	./.
chr1	42047220	.	G	.	.	LowGQX	END=42047222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42047223	.	T	.	.	LowGQX	.	GT	./.
chr1	42047224	.	T	.	.	LowGQX	END=42047230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42047231	.	A	.	.	LowGQX	.	GT	./.
chr1	42047232	.	G	.	.	LowGQX	END=42047234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42047235	.	T	.	.	LowGQX	END=42047236	GT	./.
chr1	42047237	.	T	.	.	LowGQX	END=42047238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42047239	.	C	.	.	LowGQX	END=42047240	GT	./.
chr1	42047241	.	G	.	.	LowGQX	END=42047255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42047256	.	T	.	.	LowGQX	.	GT	./.
chr1	42047257	.	T	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	42047258	.	C	.	.	LowGQX	END=42047259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	42047260	.	T	.	.	LowGQX	.	GT	./.
chr1	42047261	.	C	.	.	LowGQX	END=42047276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	42047277	.	C	.	.	LowGQX	.	GT	./.
chr1	42047278	.	T	.	.	LowGQX	END=42047282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42047283	.	G	.	.	LowGQX	.	GT	./.
chr1	42047284	.	G	.	.	LowGQX	END=42047289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42047290	.	T	.	.	LowGQX	.	GT	./.
chr1	42047291	.	C	.	.	LowGQX	END=42047301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42047302	.	T	.	.	LowGQX	.	GT	./.
chr1	42047303	.	C	.	.	LowGQX	END=42047329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42047330	.	T	.	.	LowGQX	.	GT	./.
chr1	42047331	.	C	.	.	LowGQX	END=42047391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42047392	.	G	.	.	LowGQX	END=42048178	GT	./.
chr1	42048179	.	C	.	.	LowGQX	END=42048258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42048259	.	A	.	.	LowGQX	.	GT	./.
chr1	42048260	.	A	.	.	LowGQX	END=42048303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42048304	.	C	.	.	LowGQX	.	GT	./.
chr1	42048305	.	C	.	.	LowGQX	END=42048311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42048312	.	C	.	.	LowGQX	END=42048313	GT	./.
chr1	42048314	.	T	.	.	LowGQX	END=42048331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42048332	.	T	.	.	LowGQX	.	GT	./.
chr1	42048333	.	C	.	.	LowGQX	END=42048335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42048336	.	T	.	.	LowGQX	END=42048337	GT	./.
chr1	42048338	.	G	.	.	LowGQX	END=42048348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42048349	.	A	.	.	LowGQX	.	GT	./.
chr1	42048350	.	G	.	.	LowGQX	END=42048352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42048353	.	T	.	.	LowGQX	.	GT	./.
chr1	42048354	.	G	.	.	LowGQX	END=42048356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42048357	.	T	.	.	LowGQX	.	GT	./.
chr1	42048358	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42048359	.	C	.	.	LowGQX	.	GT	./.
chr1	42048360	.	C	.	.	LowGQX	END=42048363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42048364	.	T	.	.	LowGQX	.	GT	./.
chr1	42048365	.	T	.	.	LowGQX	END=42048376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42048377	.	T	.	.	LowGQX	.	GT	./.
chr1	42048378	.	T	.	.	LowGQX	END=42048384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42048385	.	C	.	.	LowGQX	.	GT	./.
chr1	42048386	.	A	.	.	LowGQX	END=42048390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42048391	.	T	.	.	LowGQX	.	GT	./.
chr1	42048392	.	C	.	.	LowGQX	END=42048400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42048401	.	T	.	.	LowGQX	.	GT	./.
chr1	42048402	.	C	.	.	LowGQX	END=42048427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42048428	.	T	.	.	LowGQX	.	GT	./.
chr1	42048429	.	G	.	.	LowGQX	END=42048467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42048468	.	T	.	.	LowGQX	.	GT	./.
chr1	42048469	.	G	.	.	LowGQX	END=42048472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42048473	.	A	.	.	LowGQX	END=42049824	GT	./.
chr1	42049825	.	G	.	.	LowGQX	END=42049975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42049976	.	C	.	.	LowGQX	END=42049982	GT	./.
chr1	42049983	.	T	.	.	LowGQX	END=42049994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42049995	.	A	.	.	LowGQX	.	GT	./.
chr1	42049996	.	G	.	.	LowGQX	END=42050006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42050007	.	G	.	.	LowGQX	.	GT	./.
chr1	42050008	.	G	.	.	LowGQX	END=42050034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42050035	.	A	.	.	LowGQX	.	GT	./.
chr1	42050036	.	G	.	.	LowGQX	END=42050099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42050100	.	G	.	.	LowGQX	.	GT	./.
chr1	42050101	.	T	.	.	LowGQX	END=42050132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42050133	.	A	.	.	LowGQX	END=42050470	GT	./.
chr1	42619117	.	G	.	.	LowGQX	END=42619201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	42619202	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	42619203	.	T	.	.	LowGQX	END=42619216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	42620329	.	A	.	.	LowGQX	END=42620364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	42620365	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	42620366	.	G	.	.	LowGQX	END=42620411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	42620412	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	42620413	.	G	.	.	LowGQX	END=42620430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	42620431	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	42620432	.	C	.	.	LowGQX	END=42620449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	42620450	.	C	A	9.28	LowGQX	BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=3.09;ReadPosRankSum=0.736;SB=-30.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr1	42620451	.	C	.	.	LowGQX	END=42620469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	42620470	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	42620471	.	G	.	.	LowGQX	END=42620487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42620488	.	T	.	.	LowGQX	.	GT	./.
chr1	42620489	.	C	.	.	LowGQX	END=42620511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42620512	.	G	.	.	LowGQX	.	GT	./.
chr1	42620513	.	G	.	.	LowGQX	END=42620522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42620523	.	T	.	.	LowGQX	.	GT	./.
chr1	42620524	.	C	.	.	LowGQX	END=42620539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42621187	.	C	.	.	LowGQX	END=42621286	GT	./.
chr1	42628560	.	G	.	.	LowGQX	END=42628659	GT	./.
chr1	42629072	.	A	.	.	LowGQX	END=42629143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42629144	.	G	.	.	LowGQX	END=42629145	GT	./.
chr1	42629146	.	T	.	.	LowGQX	END=42629226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42629227	.	C	.	.	LowGQX	END=42629283	GT	./.
chr1	42630297	.	C	.	.	LowGQX	END=42630396	GT	./.
chr1	42645379	.	C	.	.	LowGQX	END=42645498	GT	./.
chr1	42647586	.	A	.	.	LowGQX	END=42647697	GT	./.
chr1	42654406	.	A	.	.	LowGQX	END=42654538	GT	./.
chr1	42654539	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42654540	.	A	.	.	LowGQX	.	GT	./.
chr1	42654541	.	C	.	.	LowGQX	END=42654546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42654547	.	C	.	.	LowGQX	.	GT	./.
chr1	42654548	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42654549	.	G	.	.	LowGQX	.	GT	./.
chr1	42654550	.	G	.	.	LowGQX	END=42654558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42654559	.	C	.	.	LowGQX	.	GT	./.
chr1	42654560	.	C	.	.	LowGQX	END=42654562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42654563	.	T	.	.	LowGQX	.	GT	./.
chr1	42654564	.	T	.	.	LowGQX	END=42654598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	42654599	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	42654600	.	C	.	.	LowGQX	END=42654601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	42654972	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42654973	.	C	.	.	LowGQX	.	GT	./.
chr1	42654974	.	C	.	.	LowGQX	END=42654977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42654978	.	A	.	.	LowGQX	.	GT	./.
chr1	42654979	.	A	.	.	LowGQX	END=42654987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42654988	.	A	.	.	LowGQX	.	GT	./.
chr1	42654989	.	G	.	.	LowGQX	END=42654990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42654991	.	T	.	.	LowGQX	.	GT	./.
chr1	42654992	.	C	.	.	LowGQX	END=42654994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42654995	.	C	.	.	LowGQX	END=42654996	GT	./.
chr1	42654997	.	T	.	.	LowGQX	END=42654998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42654999	.	T	.	.	LowGQX	END=42655077	GT	./.
chr1	42656972	.	A	.	.	LowGQX	END=42657076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42657077	.	C	.	.	LowGQX	.	GT	./.
chr1	42657078	.	T	.	.	LowGQX	END=42657079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42657080	.	G	.	.	LowGQX	END=42657392	GT	./.
chr1	42660559	.	A	.	.	LowGQX	END=42660737	GT	./.
chr1	42664771	.	A	.	.	LowGQX	END=42664775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42664776	.	T	.	.	LowGQX	END=42664903	GT	./.
chr1	42671431	.	A	.	.	LowGQX	END=42671536	GT	./.
chr1	42693546	.	G	.	.	LowGQX	END=42693645	GT	./.
chr1	42730656	.	T	.	.	LowGQX	END=42730693	GT	./.
chr1	42730694	.	G	.	.	LowGQX	END=42730807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	42730808	.	C	.	.	LowGQX	END=42730862	GT	./.
chr1	42744017	.	A	.	.	LowGQX	END=42744345	GT	./.
chr1	42776693	.	A	.	.	LowGQX	END=42776719	GT	./.
chr1	42776720	.	C	.	.	LowGQX	END=42776723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42776724	.	A	.	.	LowGQX	.	GT	./.
chr1	42776725	.	A	.	.	LowGQX	END=42776792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42846584	.	G	.	.	LowGQX	END=42846770	GT	./.
chr1	42865073	.	A	.	.	LowGQX	END=42865307	GT	./.
chr1	42870176	.	T	.	.	LowGQX	END=42870275	GT	./.
chr1	42875653	.	A	.	.	LowGQX	END=42875860	GT	./.
chr1	42880153	.	A	.	.	LowGQX	END=42880357	GT	./.
chr1	42880358	.	G	.	.	LowGQX	END=42880515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42880516	.	T	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	42880517	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42880518	.	A	.	.	LowGQX	END=42880587	GT	./.
chr1	42880588	.	G	.	.	LowGQX	END=42880647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	42896405	.	C	.	.	LowGQX	END=42896531	GT	./.
chr1	42898772	.	C	.	.	LowGQX	END=42898961	GT	./.
chr1	42900943	.	A	.	.	LowGQX	END=42901058	GT	./.
chr1	42902090	.	A	.	.	LowGQX	END=42902216	GT	./.
chr1	42905525	.	A	.	.	LowGQX	END=42905698	GT	./.
chr1	42914136	.	A	.	.	LowGQX	END=42914311	GT	./.
chr1	42915587	.	A	.	.	LowGQX	END=42915732	GT	./.
chr1	42921557	.	A	.	.	LowGQX	END=42921715	GT	./.
chr1	42922235	.	A	.	.	LowGQX	END=42922746	GT	./.
chr1	42922916	.	A	.	.	LowGQX	END=42923010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42923011	.	G	.	.	LowGQX	.	GT	./.
chr1	42923012	.	C	.	.	LowGQX	END=42923015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42923016	.	C	.	.	LowGQX	.	GT	./.
chr1	42923017	.	T	.	.	LowGQX	END=42923040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42923041	.	C	.	.	LowGQX	END=42923051	GT	./.
chr1	42925272	.	A	.	.	LowGQX	END=42925599	GT	./.
chr1	42986857	.	A	.	.	LowGQX	END=42986860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42986861	.	A	.	.	LowGQX	.	GT	./.
chr1	42986862	.	G	.	.	LowGQX	END=42986864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42986865	.	T	.	.	LowGQX	.	GT	./.
chr1	42986866	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42986867	.	G	.	.	LowGQX	.	GT	./.
chr1	42986868	.	T	.	.	LowGQX	END=42986872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42986873	.	A	.	.	LowGQX	.	GT	./.
chr1	42986874	.	T	.	.	LowGQX	END=42986880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42986881	.	A	.	.	LowGQX	.	GT	./.
chr1	42986882	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42986883	.	C	.	.	LowGQX	END=42986884	GT	./.
chr1	42986885	.	C	.	.	LowGQX	END=42986887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42986888	.	G	.	.	LowGQX	.	GT	./.
chr1	42986889	.	A	.	.	LowGQX	END=42986892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42986893	.	A	.	.	LowGQX	.	GT	./.
chr1	42986894	.	C	.	.	LowGQX	END=42986899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42986900	.	T	.	.	LowGQX	.	GT	./.
chr1	42986901	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42986902	.	G	.	.	LowGQX	END=42986903	GT	./.
chr1	42986904	.	C	.	.	LowGQX	END=42986909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42986910	.	A	.	.	LowGQX	.	GT	./.
chr1	42986911	.	A	.	.	LowGQX	END=42986917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42986918	.	G	.	.	LowGQX	.	GT	./.
chr1	42986919	.	G	.	.	LowGQX	END=42986936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42986937	.	A	.	.	LowGQX	.	GT	./.
chr1	42986938	.	C	.	.	LowGQX	END=42986941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	42986942	.	A	.	.	LowGQX	.	GT	./.
chr1	42986943	.	C	.	.	LowGQX	END=42986956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43002154	.	A	.	.	LowGQX	END=43002231	GT	./.
chr1	43002232	.	G	.	.	LowGQX	END=43002259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43002260	.	A	.	.	LowGQX	.	GT	./.
chr1	43002261	.	G	.	.	LowGQX	END=43002274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43002846	.	T	.	.	LowGQX	END=43002945	GT	./.
chr1	43004842	.	A	.	.	LowGQX	END=43004989	GT	./.
chr1	43004990	.	G	.	.	LowGQX	END=43004992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43004993	.	T	.	.	LowGQX	.	GT	./.
chr1	43004994	.	T	.	.	LowGQX	END=43005008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43005009	.	T	.	.	LowGQX	.	GT	./.
chr1	43005010	.	C	.	.	LowGQX	END=43005021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43008431	.	A	.	.	LowGQX	END=43008530	GT	./.
chr1	43011079	.	A	.	.	LowGQX	END=43011278	GT	./.
chr1	43021825	.	A	.	.	LowGQX	END=43021827	GT	./.
chr1	43021828	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43021829	.	C	.	.	LowGQX	.	GT	./.
chr1	43021830	.	C	.	.	LowGQX	END=43021833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43021834	.	T	.	.	LowGQX	.	GT	./.
chr1	43021835	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43021836	.	A	.	.	LowGQX	.	GT	./.
chr1	43021837	.	G	.	.	LowGQX	END=43021839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43021840	.	G	.	.	LowGQX	.	GT	./.
chr1	43021841	.	A	.	.	LowGQX	END=43021844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43021845	.	A	.	.	LowGQX	.	GT	./.
chr1	43021846	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43021847	.	A	.	.	LowGQX	.	GT	./.
chr1	43021848	.	G	.	.	LowGQX	END=43021853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43021854	.	G	.	.	LowGQX	.	GT	./.
chr1	43021855	.	G	.	.	LowGQX	END=43021871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43021872	.	A	.	.	LowGQX	.	GT	./.
chr1	43021873	.	G	.	.	LowGQX	END=43021890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43021891	.	C	.	.	LowGQX	.	GT	./.
chr1	43021892	.	C	.	.	LowGQX	END=43021900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43021901	.	G	.	.	LowGQX	.	GT	./.
chr1	43021902	.	G	.	.	LowGQX	END=43021915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43021916	.	G	.	.	LowGQX	.	GT	./.
chr1	43021917	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43021918	.	T	.	.	LowGQX	END=43021919	GT	./.
chr1	43021920	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43021921	.	C	.	.	LowGQX	.	GT	./.
chr1	43021922	.	A	.	.	LowGQX	END=43021924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43021925	.	A	.	.	LowGQX	END=43022078	GT	./.
chr1	43023763	.	C	.	.	LowGQX	END=43023803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43023804	.	T	.	.	LowGQX	END=43023862	GT	./.
chr1	43031965	.	A	.	.	LowGQX	END=43031968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43031969	.	T	.	.	LowGQX	.	GT	./.
chr1	43031970	.	C	.	.	LowGQX	END=43031971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43031972	.	A	.	.	LowGQX	END=43031973	GT	./.
chr1	43031974	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43031975	.	A	.	.	LowGQX	END=43031977	GT	./.
chr1	43031978	.	T	.	.	LowGQX	END=43031980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43031981	.	A	.	.	LowGQX	END=43031982	GT	./.
chr1	43031983	.	A	.	.	LowGQX	END=43031987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43031988	.	C	.	.	LowGQX	.	GT	./.
chr1	43031989	.	T	.	.	LowGQX	END=43032000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43032001	.	A	.	.	LowGQX	.	GT	./.
chr1	43032002	.	G	.	.	LowGQX	END=43032004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43032005	.	A	.	.	LowGQX	.	GT	./.
chr1	43032006	.	G	.	.	LowGQX	END=43032010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43032011	.	A	.	.	LowGQX	.	GT	./.
chr1	43032012	.	G	.	.	LowGQX	END=43032019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43032020	.	A	.	.	LowGQX	END=43032021	GT	./.
chr1	43032022	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43032023	.	T	.	.	LowGQX	.	GT	./.
chr1	43032024	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43032025	.	A	.	.	LowGQX	.	GT	./.
chr1	43032026	.	C	.	.	LowGQX	END=43032028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43032029	.	G	.	.	LowGQX	.	GT	./.
chr1	43032030	.	A	.	.	LowGQX	END=43032035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43032036	.	C	.	.	LowGQX	END=43032037	GT	./.
chr1	43032038	.	C	.	.	LowGQX	END=43032045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43032046	.	A	.	.	LowGQX	END=43032047	GT	./.
chr1	43032048	.	A	.	.	LowGQX	END=43032050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43032051	.	C	.	.	LowGQX	END=43032052	GT	./.
chr1	43032053	.	A	.	.	LowGQX	END=43032078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43032079	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43032080	.	A	.	.	LowGQX	END=43032088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43032089	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43032090	.	G	.	.	LowGQX	END=43032148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43042689	.	A	.	.	LowGQX	END=43042839	GT	./.
chr1	43042840	.	G	.	.	LowGQX	END=43042902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43046458	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43046459	.	T	.	.	LowGQX	END=43046557	GT	./.
chr1	43047029	.	A	.	.	LowGQX	END=43047187	GT	./.
chr1	43054990	.	A	.	.	LowGQX	END=43055093	GT	./.
chr1	43055094	.	A	.	.	LowGQX	END=43055095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055096	.	T	.	.	LowGQX	END=43055097	GT	./.
chr1	43055098	.	C	.	.	LowGQX	END=43055099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055100	.	G	.	.	LowGQX	.	GT	./.
chr1	43055101	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055102	.	A	.	.	LowGQX	.	GT	./.
chr1	43055103	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055104	.	C	.	.	LowGQX	.	GT	./.
chr1	43055105	.	A	.	.	LowGQX	END=43055106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055107	.	G	.	.	LowGQX	.	GT	./.
chr1	43055108	.	A	.	.	LowGQX	END=43055109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055110	.	G	.	.	LowGQX	.	GT	./.
chr1	43055111	.	C	.	.	LowGQX	END=43055116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055117	.	T	.	.	LowGQX	END=43055118	GT	./.
chr1	43055119	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055120	.	A	.	.	LowGQX	.	GT	./.
chr1	43055121	.	A	.	.	LowGQX	END=43055122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055123	.	A	.	.	LowGQX	.	GT	./.
chr1	43055124	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055125	.	C	.	.	LowGQX	.	GT	./.
chr1	43055126	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055127	.	G	.	.	LowGQX	END=43055128	GT	./.
chr1	43055129	.	A	.	.	LowGQX	END=43055132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055133	.	T	.	.	LowGQX	END=43055134	GT	./.
chr1	43055135	.	A	.	.	LowGQX	END=43055136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055137	.	A	.	.	LowGQX	.	GT	./.
chr1	43055138	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055139	.	A	.	.	LowGQX	.	GT	./.
chr1	43055140	.	A	.	.	LowGQX	END=43055143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055144	.	A	.	.	LowGQX	.	GT	./.
chr1	43055145	.	A	.	.	LowGQX	END=43055146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055147	.	A	.	.	LowGQX	.	GT	./.
chr1	43055148	.	T	.	.	LowGQX	END=43055150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055151	.	T	.	.	LowGQX	END=43055152	GT	./.
chr1	43055153	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055154	.	G	.	.	LowGQX	END=43055155	GT	./.
chr1	43055156	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055157	.	A	.	.	LowGQX	.	GT	./.
chr1	43055158	.	A	.	.	LowGQX	END=43055162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43055163	.	G	.	.	LowGQX	.	GT	./.
chr1	43055164	.	T	.	.	LowGQX	END=43055166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43076647	.	A	.	.	LowGQX	END=43076763	GT	./.
chr1	43102856	.	A	.	.	LowGQX	END=43103048	GT	./.
chr1	43103049	.	G	.	.	LowGQX	END=43103083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43103084	.	T	.	.	LowGQX	.	GT	./.
chr1	43103085	.	G	.	.	LowGQX	END=43103104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43108142	.	A	.	.	LowGQX	END=43108175	GT	./.
chr1	43108176	.	A	.	.	LowGQX	END=43108282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43110362	.	A	.	.	LowGQX	END=43110480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43111804	.	A	.	.	LowGQX	END=43111990	GT	./.
chr1	43119031	.	C	.	.	LowGQX	END=43119033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43119034	.	T	.	.	LowGQX	.	GT	./.
chr1	43119035	.	C	.	.	LowGQX	END=43119046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43119047	.	G	.	.	LowGQX	.	GT	./.
chr1	43119048	.	A	.	.	LowGQX	END=43119074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43119075	.	C	.	.	LowGQX	.	GT	./.
chr1	43119076	.	C	.	.	LowGQX	END=43119078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43119079	.	A	.	.	LowGQX	.	GT	./.
chr1	43119080	.	G	.	.	LowGQX	END=43119084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43119085	.	G	.	.	LowGQX	END=43119130	GT	./.
chr1	43119487	.	A	.	.	LowGQX	END=43119701	GT	./.
chr1	43124046	.	A	.	.	LowGQX	END=43124200	GT	./.
chr1	43124498	.	T	.	.	LowGQX	END=43124597	GT	./.
chr1	43124897	.	A	.	.	LowGQX	END=43125041	GT	./.
chr1	43125128	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43125129	.	T	.	.	LowGQX	END=43125130	GT	./.
chr1	43125131	.	G	.	.	LowGQX	END=43125142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43125143	.	G	.	.	LowGQX	.	GT	./.
chr1	43125144	.	G	.	.	LowGQX	END=43125147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43125148	.	T	.	.	LowGQX	.	GT	./.
chr1	43125149	.	G	.	.	LowGQX	END=43125161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43125162	.	T	.	.	LowGQX	.	GT	./.
chr1	43125163	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43125164	.	A	.	.	LowGQX	.	GT	./.
chr1	43125165	.	C	.	.	LowGQX	END=43125175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43125176	.	T	.	.	LowGQX	END=43125177	GT	./.
chr1	43125178	.	T	.	.	LowGQX	END=43125184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43125185	.	G	.	.	LowGQX	.	GT	./.
chr1	43125186	.	G	.	.	LowGQX	END=43125199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43125200	.	G	.	.	LowGQX	END=43125239	GT	./.
chr1	43126529	.	T	.	.	LowGQX	END=43126628	GT	./.
chr1	43130531	.	C	.	.	LowGQX	END=43130681	GT	./.
chr1	43131645	.	C	.	.	LowGQX	END=43131744	GT	./.
chr1	43132189	.	A	.	.	LowGQX	END=43132288	GT	./.
chr1	43133007	.	T	.	.	LowGQX	END=43133094	GT	./.
chr1	43133095	.	G	.	.	LowGQX	END=43133106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43148214	.	C	.	.	LowGQX	END=43148404	GT	./.
chr1	43148647	.	G	.	.	LowGQX	END=43149036	GT	./.
chr1	43149056	.	C	.	.	LowGQX	END=43149155	GT	./.
chr1	43159069	.	T	.	.	LowGQX	END=43159094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	43159095	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	43159096	.	T	.	.	LowGQX	END=43159130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	43159131	.	T	.	.	LowGQX	END=43159180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43159181	.	T	.	.	LowGQX	END=43159188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	43159189	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	43159190	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr1	43159191	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	43159192	.	C	.	.	LowGQX	END=43159194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	43159195	.	G	.	8.18	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.02:60:0
chr1	43159196	.	T	.	.	LowGQX	END=43159227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	43161865	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43161866	.	C	.	32.03	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:2.50:60:3
chr1	43161867	.	T	.	.	LowGQX	END=43161920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43161921	.	G	.	.	LowGQX	END=43161964	GT	./.
chr1	43162311	.	A	.	.	LowGQX	END=43162617	GT	./.
chr1	43162843	.	T	.	.	LowGQX	END=43162849	GT	./.
chr1	43162850	.	G	.	.	LowGQX	END=43162942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43166450	.	A	.	.	LowGQX	END=43166688	GT	./.
chr1	43200706	.	A	.	.	PASS	END=43200713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	43200714	.	G	.	.	PASS	END=43200743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	43200744	.	T	.	.	PASS	END=43200840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	43200841	.	T	.	.	PASS	END=43200852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	43200853	.	T	.	207.55	PASS	DP=97;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:73:97:99:60:99
chr1	43200854	.	C	.	.	PASS	END=43200856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	43201432	.	C	.	.	PASS	END=43201441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	43201442	.	T	.	.	PASS	END=43201461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	43201462	.	G	.	.	PASS	END=43201489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	43201490	.	G	.	.	PASS	END=43201515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	43201516	.	G	.	.	PASS	END=43201533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	43201534	.	G	A	1225.45	PASS	BaseQRankSum=1.999;DP=137;Dels=0.00;FS=3.439;HRun=0;HaplotypeScore=17.9915;MQ=60;MQ0=0;MQRankSum=-1.644;QD=8.94;ReadPosRankSum=2.670;SB=-556.91	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:76,61:137:99:1255,0,1628:60:99:0.445
chr1	43201535	.	G	.	.	PASS	END=43201610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	43201611	.	C	.	.	PASS	END=43201629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	43201630	.	A	.	.	PASS	END=43201666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	43201667	.	C	.	.	PASS	END=43201685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	43201686	.	T	.	.	PASS	END=43201712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	43201713	.	A	.	.	PASS	END=43201720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:87:60
chr1	43201721	.	T	.	.	PASS	END=43201730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	43201731	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:48:60
chr1	43201732	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:72:60
chr1	43201733	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:0:60
chr1	43201734	.	G	.	.	PASS	END=43201737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	43201738	.	G	.	.	PASS	END=43201747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	43201748	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:66:60
chr1	43201749	.	T	.	.	PASS	END=43201750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	43201751	.	G	.	.	PASS	END=43201752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr1	43203849	.	G	.	.	PASS	END=43203886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	43203887	.	C	.	.	PASS	END=43203926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	43203927	.	A	.	.	PASS	END=43204035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	43204041	.	G	.	.	PASS	END=43204187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	43204188	.	T	.	.	PASS	END=43204215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	43204216	.	C	.	.	PASS	END=43204235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:96:60
chr1	43204236	.	C	.	.	PASS	END=43204250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	43204251	.	T	.	.	PASS	END=43204262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	43204263	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:42:60
chr1	43204264	.	G	.	.	PASS	END=43204271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	43204272	.	T	.	.	PASS	END=43204281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	43204282	.	T	.	.	PASS	END=43204283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chr1	43204284	.	G	.	.	PASS	END=43204286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	43204287	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:60
chr1	43204288	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr1	43204289	.	G	.	.	PASS	END=43204290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	43204291	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:0:60
chr1	43204292	.	G	.	.	PASS	END=43204294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	43204295	.	G	.	.	LowGQX	END=43204296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:24:60
chr1	43204297	.	T	.	.	PASS	END=43204301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:58
chr1	43204302	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:58
chr1	43204303	.	T	.	.	LowGQX	END=43204304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:12:57
chr1	43204305	.	G	.	.	PASS	END=43204307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:57
chr1	43205461	.	T	.	.	PASS	END=43205468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr1	43205469	.	T	.	.	PASS	END=43205475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	43205476	.	A	.	.	PASS	END=43205477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	43205478	.	C	.	.	PASS	END=43205480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr1	43205481	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:45:60
chr1	43205482	.	C	.	.	PASS	END=43205483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	43205484	.	T	.	.	PASS	END=43205488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	43205489	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:45:60
chr1	43205490	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:60:60
chr1	43205491	.	C	.	.	PASS	END=43205508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	43205509	.	T	.	.	PASS	END=43205537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	43205538	.	A	.	.	PASS	END=43205560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:84:60
chr1	43205561	.	G	.	.	PASS	END=43205598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	43205599	.	G	.	.	PASS	END=43205627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	43205628	.	G	.	.	PASS	END=43205690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	43205691	.	A	.	.	PASS	END=43205744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	43205745	.	A	.	.	PASS	END=43205758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	43205759	.	C	.	.	PASS	END=43205773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	43205774	.	T	.	.	PASS	END=43205778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	43205779	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:45:60
chr1	43205780	.	A	.	.	PASS	END=43205785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	43212357	.	C	.	.	PASS	END=43212377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:253:99:60
chr1	43212378	.	T	.	.	PASS	END=43212430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:330:99:60
chr1	43212431	.	A	G	11664.17	PASS	BaseQRankSum=0.580;DP=411;Dels=0.00;FS=0.000;HRun=6;HaplotypeScore=47.1808;MQ=60;MQ0=0;MQRankSum=1.613;QD=28.38;ReadPosRankSum=-1.681;SB=-6598.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,408:409:99:11664,833,0:60:99:0.998
chr1	43212432	.	C	.	.	PASS	END=43212519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:329:99:60
chr1	43212520	.	T	.	.	PASS	END=43212523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:313:99:60
chr1	43212532	.	A	.	.	PASS	END=43212570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr1	43212571	.	A	.	.	PASS	END=43212628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	43212629	.	A	.	.	PASS	END=43212660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	43212661	.	C	.	.	PASS	END=43212760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	43212761	.	G	.	.	PASS	END=43212789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	43212790	.	T	.	.	PASS	END=43212818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr1	43212819	.	A	.	.	PASS	END=43212868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:310:99:60
chr1	43212869	.	A	T	3732.58	PASS	BaseQRankSum=1.707;DP=349;Dels=0.00;FS=13.692;HRun=0;HaplotypeScore=34.2646;MQ=60;MQ0=0;MQRankSum=0.332;QD=10.70;ReadPosRankSum=-0.171;SB=-1842.88	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:192,157:349:99:3733,0,4339:60:99:0.450
chr1	43212870	.	A	.	.	PASS	END=43213019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:282:99:60
chr1	43213020	.	C	.	.	PASS	END=43213066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr1	43213067	.	T	.	.	PASS	END=43213090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	43213091	.	G	.	.	PASS	END=43213111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	43213112	.	G	.	.	PASS	END=43213134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	43213343	.	G	.	.	PASS	END=43213400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	43213401	.	G	.	.	PASS	END=43213497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	43213498	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:79:99:60
chr1	43213499	.	C	T	2084.35	PASS	DP=80;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.6178;MQ=60;MQ0=0;QD=26.05;SB=-1031.95	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,79:80:99:2117,163,0:60:99:1.000
chr1	43213500	.	C	.	.	PASS	END=43213520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	43213820	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:99:60
chr1	43213821	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:69:60
chr1	43213822	.	C	.	.	PASS	END=43213844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:91:60
chr1	43213845	.	T	.	.	PASS	END=43213855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	43213856	.	C	.	.	PASS	END=43213875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	43213876	.	G	.	.	PASS	END=43213899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	43213900	.	C	.	.	PASS	END=43213995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	43213996	.	C	.	.	PASS	END=43214019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	43214020	.	A	.	.	PASS	END=43214039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	43215806	.	A	.	.	PASS	END=43215818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	43215819	.	C	.	.	PASS	END=43215835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	43215836	.	T	.	.	PASS	END=43215908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	43215909	.	A	.	.	PASS	END=43215960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	43215961	.	T	.	.	PASS	END=43215971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	43215972	.	G	.	.	PASS	END=43215988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	43215989	.	C	.	.	PASS	END=43216026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	43216027	.	T	.	.	PASS	END=43216044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	43216045	.	T	.	.	PASS	END=43216047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	43216048	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:24:60
chr1	43216049	.	A	.	.	PASS	END=43216058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	43217301	.	T	.	.	LowGQX	END=43217345	GT	./.
chr1	43217346	.	T	.	.	LowGQX	END=43217362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43217363	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43217364	.	C	.	.	LowGQX	END=43217371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43217372	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43217373	.	C	.	.	LowGQX	END=43217375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43217376	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43217377	.	C	.	.	LowGQX	END=43217427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43217428	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43217429	.	C	.	.	LowGQX	END=43217465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43217466	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43217467	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43217468	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43217469	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43217470	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43217471	.	T	.	.	LowGQX	END=43217496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43217497	.	A	.	.	LowGQX	END=43217505	GT	./.
chr1	43217894	.	C	.	.	PASS	END=43217902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	43217903	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:40:60
chr1	43217904	.	C	.	.	PASS	END=43217923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:77:60
chr1	43217924	.	A	.	.	PASS	END=43217950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	43217951	.	G	.	.	PASS	END=43218010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	43218011	.	C	.	.	PASS	END=43218073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:84:60
chr1	43218074	.	A	.	.	PASS	END=43218091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	43218157	.	G	.	.	PASS	END=43218200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	43218201	.	C	.	.	PASS	END=43218313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	43218314	.	C	.	.	PASS	END=43218330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	43218331	.	G	.	.	PASS	END=43218332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:66:60
chr1	43218333	.	C	.	.	PASS	END=43218386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	43220489	.	T	.	.	PASS	END=43220512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:90:60
chr1	43220513	.	G	.	.	PASS	END=43220541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	43220542	.	T	.	.	PASS	END=43220562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	43220563	.	T	.	.	PASS	END=43220684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	43220685	.	A	.	.	PASS	END=43220710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	43220711	.	T	.	.	PASS	END=43220712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	43220785	.	C	.	.	PASS	END=43220824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	43220825	.	A	.	.	PASS	END=43220939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	43221168	.	C	.	.	PASS	END=43221206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	43221207	.	A	.	.	PASS	END=43221255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	43221256	.	A	.	.	PASS	END=43221307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	43221308	.	T	.	.	PASS	END=43221348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	43221349	.	C	.	.	PASS	END=43221359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	43223403	.	C	.	.	PASS	END=43223417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	43223418	.	A	.	.	PASS	END=43223437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	43223438	.	G	.	.	PASS	END=43223456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr1	43223457	.	A	.	.	PASS	END=43223497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	43223498	.	C	.	.	PASS	END=43223587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	43223588	.	T	.	.	PASS	END=43223609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr1	43223610	.	A	.	.	PASS	END=43223644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	43224472	.	T	.	.	PASS	END=43224496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	43224497	.	G	.	.	PASS	END=43224521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	43224522	.	C	.	.	PASS	END=43224619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	43224620	.	G	.	.	PASS	END=43224701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	43224702	.	A	.	.	PASS	END=43224705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	43224821	.	C	.	.	PASS	END=43224871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	43224872	.	C	.	.	PASS	END=43224986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	43224987	.	C	.	.	PASS	END=43225013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	43225014	.	C	.	.	PASS	END=43225028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	43225029	.	T	.	.	PASS	END=43225040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	43225041	.	C	.	.	PASS	END=43225077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	43225078	.	G	.	.	PASS	END=43225091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:99:60
chr1	43225092	.	G	.	.	PASS	END=43225104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:78:60
chr1	43225105	.	A	.	.	PASS	END=43225107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	43225108	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:27:60
chr1	43225109	.	C	.	.	PASS	END=43225112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	43227923	.	C	.	.	PASS	END=43227959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	43227960	.	A	.	.	PASS	END=43228094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	43228095	.	T	.	.	PASS	END=43228166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	43228167	.	G	.	.	PASS	END=43228188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	43228189	.	T	A	1432.29	SB	DP=44;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=1.9466;MQ=60;MQ0=0;QD=32.55;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,44:44:99:1465,114,0:60:99:1.000
chr1	43228190	.	C	.	.	PASS	END=43228196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	43228197	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:63:60
chr1	43232127	.	A	.	.	PASS	END=43232134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:84:60
chr1	43232135	.	C	.	.	PASS	END=43232158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	43232159	.	G	.	.	PASS	END=43232173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	43232174	.	G	.	.	PASS	END=43232201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	43232202	.	G	.	.	PASS	END=43232319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	43232320	.	C	.	.	PASS	END=43232357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	43232358	.	C	.	.	PASS	END=43232471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	43232472	.	G	.	.	PASS	END=43232542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	43232543	.	T	.	.	PASS	END=43232573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	43232574	.	C	.	.	PASS	END=43232609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	43232610	.	T	.	.	PASS	END=43232621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	43232622	.	C	.	.	PASS	END=43232624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:57:60
chr1	43232625	.	C	.	.	PASS	END=43232626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	43232627	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:50:60
chr1	43232628	.	C	.	.	PASS	END=43232633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	43232634	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:63:60
chr1	43232635	.	A	.	.	PASS	END=43232655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	43232656	.	C	.	.	PASS	END=43232659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	43232660	.	C	.	.	PASS	END=43232662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	43232663	.	A	.	.	PASS	END=43232665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	43232666	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:30:60
chr1	43232667	.	G	.	.	PASS	END=43232668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	43232669	.	C	.	.	LowGQX	END=43232670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:27:60
chr1	43232671	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:54:60
chr1	43232672	.	C	.	.	PASS	END=43232683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	43232684	.	A	.	.	PASS	END=43232685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	43232686	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:48:60
chr1	43232687	.	G	.	.	PASS	END=43232693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	43232920	.	G	.	.	LowGQX	END=43232960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	43232961	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43232962	.	T	.	.	LowGQX	END=43233078	GT	./.
chr1	43233079	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233080	.	A	.	.	LowGQX	END=43233083	GT	./.
chr1	43233084	.	G	.	.	LowGQX	END=43233087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233088	.	G	.	.	LowGQX	.	GT	./.
chr1	43233089	.	A	.	.	LowGQX	END=43233091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233092	.	T	.	.	LowGQX	.	GT	./.
chr1	43233093	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233094	.	A	.	.	LowGQX	.	GT	./.
chr1	43233095	.	G	.	.	LowGQX	END=43233096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233097	.	T	.	.	LowGQX	.	GT	./.
chr1	43233098	.	C	.	.	LowGQX	END=43233107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233108	.	A	.	.	LowGQX	.	GT	./.
chr1	43233109	.	G	.	.	LowGQX	END=43233115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233116	.	T	.	.	LowGQX	.	GT	./.
chr1	43233117	.	C	.	.	LowGQX	END=43233118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233119	.	G	.	.	LowGQX	END=43233120	GT	./.
chr1	43233121	.	G	.	.	LowGQX	END=43233122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233123	.	T	.	.	LowGQX	.	GT	./.
chr1	43233124	.	C	.	.	LowGQX	END=43233131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233132	.	G	.	.	LowGQX	.	GT	./.
chr1	43233133	.	G	.	.	LowGQX	END=43233143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233144	.	G	.	.	LowGQX	.	GT	./.
chr1	43233145	.	A	.	.	LowGQX	END=43233150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233151	.	C	.	.	LowGQX	.	GT	./.
chr1	43233152	.	G	.	.	LowGQX	END=43233154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233155	.	T	.	.	LowGQX	.	GT	./.
chr1	43233156	.	T	.	.	LowGQX	END=43233159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233160	.	T	.	.	LowGQX	END=43233161	GT	./.
chr1	43233162	.	C	.	.	LowGQX	END=43233165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233166	.	G	.	.	LowGQX	.	GT	./.
chr1	43233167	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233168	.	T	.	.	LowGQX	.	GT	./.
chr1	43233169	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233170	.	T	.	.	LowGQX	.	GT	./.
chr1	43233171	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233172	.	T	.	.	LowGQX	.	GT	./.
chr1	43233173	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233174	.	T	.	.	LowGQX	.	GT	./.
chr1	43233175	.	C	.	.	LowGQX	END=43233188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233189	.	T	.	.	LowGQX	.	GT	./.
chr1	43233190	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233191	.	G	.	.	LowGQX	.	GT	./.
chr1	43233192	.	A	.	.	LowGQX	END=43233202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233203	.	A	.	.	LowGQX	.	GT	./.
chr1	43233204	.	C	.	.	LowGQX	END=43233221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233222	.	T	.	.	LowGQX	.	GT	./.
chr1	43233223	.	G	.	.	LowGQX	END=43233236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233237	.	A	.	.	LowGQX	.	GT	./.
chr1	43233238	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233239	.	A	.	.	LowGQX	.	GT	./.
chr1	43233240	.	C	.	.	LowGQX	END=43233263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233264	.	A	.	.	LowGQX	.	GT	./.
chr1	43233265	.	C	.	.	LowGQX	END=43233287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43233288	.	T	.	.	LowGQX	.	GT	./.
chr1	43233289	.	G	.	.	LowGQX	END=43233297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43239228	.	C	.	.	LowGQX	END=43239327	GT	./.
chr1	43240406	.	A	.	.	LowGQX	END=43240541	GT	./.
chr1	43240878	.	A	.	.	LowGQX	END=43241067	GT	./.
chr1	43255080	.	C	.	.	LowGQX	END=43255179	GT	./.
chr1	43255468	.	T	.	.	LowGQX	END=43255503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43255504	.	C	.	.	LowGQX	END=43255550	GT	./.
chr1	43255551	.	T	.	.	LowGQX	END=43255577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43255578	.	T	.	.	LowGQX	.	GT	./.
chr1	43255579	.	C	.	.	LowGQX	END=43255605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43258475	.	G	.	.	LowGQX	END=43258561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43258562	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	43258563	.	C	.	.	LowGQX	END=43258574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43259271	.	G	.	.	LowGQX	END=43259415	GT	./.
chr1	43260083	.	G	.	.	LowGQX	END=43260285	GT	./.
chr1	43263469	.	T	.	.	LowGQX	END=43263568	GT	./.
chr1	43263768	.	G	.	.	LowGQX	END=43263793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43263794	.	A	.	.	LowGQX	END=43263896	GT	./.
chr1	43273079	.	G	.	.	LowGQX	END=43273178	GT	./.
chr1	43282100	.	A	.	.	LowGQX	END=43282103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	43282104	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	43282105	.	T	.	.	LowGQX	END=43282217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43282815	.	A	.	.	LowGQX	END=43282924	GT	./.
chr1	43291326	.	T	.	.	LowGQX	END=43291370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43291371	.	T	.	.	LowGQX	END=43291375	GT	./.
chr1	43291376	.	G	.	.	LowGQX	END=43291425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43296111	.	C	.	.	LowGQX	END=43296130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:60
chr1	43296131	.	G	.	.	LowGQX	END=43296172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	43296173	.	C	T	41.26	PASS	BaseQRankSum=-1.133;DP=10;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=1.133;QD=4.13;ReadPosRankSum=-1.133;SB=-43.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:6,4:10:71.25:71,0,147:60:41:0.400
chr1	43296174	.	G	.	.	LowGQX	END=43296192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	43296193	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	43296194	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	43296195	.	C	T	42.05	PASS	BaseQRankSum=0.248;DP=9;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.573;QD=4.67;ReadPosRankSum=1.422;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:6,3:9:72.04:72,0,72:60:42:0.333
chr1	43296196	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	43296197	.	T	.	.	LowGQX	END=43296204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	43296205	.	G	.	.	LowGQX	END=43296206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	43296207	.	A	.	.	LowGQX	END=43296208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	43296209	.	G	.	.	LowGQX	END=43296210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	43296437	.	A	.	.	LowGQX	END=43296475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	43296476	.	A	.	.	LowGQX	END=43296515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	43296516	.	T	.	.	LowGQX	END=43296525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43296526	.	C	.	.	LowGQX	END=43296571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	43296572	.	C	.	.	LowGQX	END=43296573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	43296574	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	43296575	.	C	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	43296576	.	C	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	43296577	.	A	.	.	LowGQX	END=43296592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	43296593	.	C	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	43296594	.	C	.	.	LowGQX	END=43296599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	43296600	.	G	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	43296601	.	G	.	.	LowGQX	END=43296610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	43296611	.	G	.	.	LowGQX	END=43296623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	43296624	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	43296625	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	43296626	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	43296627	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr1	43296628	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	43296629	.	G	.	39.02	LowGQX	DP=7;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:7:9.03:60:9
chr1	43296630	.	G	.	.	LowGQX	END=43296632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	43296633	.	T	.	.	LowGQX	END=43296634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	43296635	.	T	.	.	LowGQX	END=43296644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	43296645	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	43296646	.	C	.	.	LowGQX	END=43296648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	43296649	.	T	.	.	LowGQX	END=43296651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	43296652	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	43296653	.	A	.	.	LowGQX	END=43296664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	43296665	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:0:60
chr1	43296666	.	C	.	.	LowGQX	END=43296680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	43296681	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr1	43296682	.	C	.	.	LowGQX	END=43296696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	43296697	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:15:60
chr1	43296698	.	C	.	.	LowGQX	END=43296701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:60
chr1	43296702	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:18:60
chr1	43296703	.	G	.	.	LowGQX	END=43296721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	43296722	.	T	.	.	LowGQX	END=43296730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:60
chr1	43296731	.	T	.	.	LowGQX	END=43296732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:12:60
chr1	43296733	.	T	.	.	LowGQX	END=43296734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	43296735	.	A	.	.	LowGQX	END=43296737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:15:60
chr1	43296738	.	C	.	.	LowGQX	END=43296765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	43296766	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	43296767	.	C	.	.	LowGQX	END=43296780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	43296781	.	T	.	.	LowGQX	END=43296788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	43300707	.	A	.	.	PASS	END=43300728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	43300729	.	T	.	.	PASS	END=43300825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	43300826	.	G	.	.	PASS	END=43300827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	43301311	.	C	.	.	PASS	END=43301322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	43301323	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:69:60
chr1	43301324	.	C	.	.	PASS	END=43301365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:83:60
chr1	43301366	.	T	.	.	PASS	END=43301450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	43301451	.	T	.	.	PASS	END=43301466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	43301467	.	T	.	.	PASS	END=43301469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:75:60
chr1	43302796	.	A	.	.	LowGQX	END=43302895	GT	./.
chr1	43304563	.	G	.	.	PASS	END=43304633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	43304634	.	G	.	.	PASS	END=43304660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	43304661	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:34:60
chr1	43304662	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:90:60
chr1	43305665	.	G	.	.	PASS	END=43305668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	43305669	.	T	.	.	PASS	END=43305675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	43305676	.	G	.	.	PASS	END=43305681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	43305682	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:42:60
chr1	43305683	.	C	.	.	PASS	END=43305711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	43305712	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:48:60
chr1	43305713	.	G	.	.	PASS	END=43305719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	43305720	.	A	.	.	PASS	END=43305726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	43305727	.	A	.	.	PASS	END=43305733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	43305734	.	C	.	.	PASS	END=43305752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	43305753	.	G	.	.	PASS	END=43305758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	43305759	.	A	.	.	PASS	END=43305761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	43305762	.	T	.	.	PASS	END=43305764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	43305787	.	A	.	.	PASS	END=43305801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	43305802	.	C	.	.	PASS	END=43305808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	43305809	.	T	.	.	PASS	END=43305827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	43305828	.	A	.	.	PASS	END=43305852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	43305853	.	A	.	.	PASS	END=43305864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	43305865	.	T	.	.	PASS	END=43305886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr1	43305905	.	C	.	.	PASS	END=43305998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	43305999	.	T	.	.	PASS	END=43306004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	43308186	.	A	.	.	LowGQX	END=43308195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	43308196	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	43308197	.	C	.	.	LowGQX	END=43308202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	43308203	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	43308204	.	C	.	.	LowGQX	END=43308206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	43308207	.	A	.	39.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.02:60:9
chr1	43308208	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	43308209	.	A	.	.	LowGQX	END=43308262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	43308263	.	G	.	.	LowGQX	END=43308269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	43308270	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	43308271	.	C	.	.	LowGQX	END=43308274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	43308275	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	43308276	.	G	.	.	LowGQX	END=43308278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	43308279	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	43308280	.	G	.	.	LowGQX	END=43308284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	43308285	.	T	.	.	LowGQX	END=43308286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	43308287	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	43308288	.	C	.	.	LowGQX	END=43308290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	43308291	.	C	.	.	LowGQX	END=43308307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	43308308	.	T	.	.	LowGQX	END=43308327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	43308328	.	T	.	.	LowGQX	END=43308335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	43308336	.	C	.	.	LowGQX	END=43308345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	43308346	.	G	.	.	LowGQX	END=43308364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	43308365	.	T	.	.	LowGQX	END=43308366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	43308367	.	T	.	.	LowGQX	END=43308368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	43308369	.	T	.	.	LowGQX	END=43308370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	43308371	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	43308372	.	G	.	.	LowGQX	END=43308375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	43308376	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	43308377	.	A	.	.	LowGQX	END=43308380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	43308381	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	43308382	.	A	.	.	LowGQX	END=43308402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	43308403	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	43308404	.	G	.	.	LowGQX	END=43308407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	43308408	.	T	.	.	LowGQX	END=43308411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	43308412	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	43308413	.	C	.	.	LowGQX	END=43308433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	43308434	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	43308435	.	T	.	.	LowGQX	END=43308440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	43308441	.	C	.	.	LowGQX	END=43308470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	43308471	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	43308472	.	C	.	.	LowGQX	END=43308483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	43308484	.	A	.	.	LowGQX	END=43308485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43308486	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43308487	.	G	.	.	LowGQX	END=43308489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43308490	.	T	.	.	LowGQX	END=43308491	GT	./.
chr1	43308492	.	T	.	.	LowGQX	END=43308539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43308540	.	A	.	.	LowGQX	.	GT	./.
chr1	43308541	.	C	.	.	LowGQX	END=43308605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43308606	.	G	.	.	LowGQX	END=43308629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	43308630	.	C	.	.	LowGQX	END=43308663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	43308664	.	C	.	.	LowGQX	END=43308666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:60
chr1	43308667	.	T	.	.	LowGQX	END=43308684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	43308685	.	A	.	.	LowGQX	END=43308686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:60
chr1	43308687	.	A	.	.	LowGQX	END=43308688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	43308689	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr1	43308690	.	C	.	.	LowGQX	END=43308703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	43308704	.	T	.	.	LowGQX	END=43308708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:60
chr1	43308709	.	T	.	.	LowGQX	END=43308762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	43308763	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	43308764	.	G	.	.	LowGQX	END=43308769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	43308770	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	43308771	.	T	.	.	LowGQX	END=43308774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	43308775	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	43308776	.	G	.	.	LowGQX	END=43308779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43308780	.	T	.	.	LowGQX	.	GT	./.
chr1	43308781	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43308782	.	T	.	.	LowGQX	.	GT	./.
chr1	43308783	.	G	.	.	LowGQX	END=43308800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43308801	.	T	.	.	LowGQX	.	GT	./.
chr1	43308802	.	T	.	.	LowGQX	END=43308803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43308804	.	T	.	.	LowGQX	.	GT	./.
chr1	43308805	.	T	.	.	LowGQX	END=43308820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43308821	.	C	.	.	LowGQX	END=43308825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	43308826	.	G	.	.	LowGQX	END=43308833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	43308834	.	G	.	.	LowGQX	END=43308836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	43308837	.	T	.	.	LowGQX	END=43308886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:60
chr1	43308887	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:18:60
chr1	43308888	.	G	.	.	LowGQX	END=43308905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:60
chr1	43314999	.	C	.	.	LowGQX	END=43315098	GT	./.
chr1	43315322	.	C	.	.	LowGQX	END=43315421	GT	./.
chr1	43316336	.	C	.	.	LowGQX	END=43316435	GT	./.
chr1	43316594	.	G	.	.	LowGQX	END=43317117	GT	./.
chr1	43317118	.	A	.	.	LowGQX	END=43317137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43317138	.	G	.	.	LowGQX	.	GT	./.
chr1	43317139	.	T	.	.	LowGQX	END=43317168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43317169	.	T	.	.	LowGQX	.	GT	./.
chr1	43317170	.	G	.	.	LowGQX	END=43317260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43317261	.	T	.	.	LowGQX	END=43317486	GT	./.
chr1	43317548	.	T	.	.	LowGQX	END=43317647	GT	./.
chr1	43392342	.	G	.	.	LowGQX	END=43392377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	43392378	.	G	.	.	LowGQX	END=43392394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	43392395	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	43392396	.	G	.	.	LowGQX	END=43392398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	43392399	.	A	.	.	LowGQX	END=43392400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	43392401	.	C	.	.	LowGQX	END=43392422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	43392423	.	G	.	.	LowGQX	END=43392424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	43392425	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	43392426	.	G	.	.	LowGQX	END=43392428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	43392429	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	43392430	.	C	.	.	LowGQX	END=43392433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	43392434	.	A	.	.	LowGQX	END=43392435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	43392436	.	A	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	43392437	.	C	.	.	LowGQX	END=43392440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	43392441	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	43392661	.	A	.	.	PASS	END=43392666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	43392667	.	C	.	.	PASS	END=43392683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	43392684	.	G	.	.	PASS	END=43392708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	43392709	.	G	.	.	PASS	END=43392711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	43392712	.	T	.	.	PASS	END=43392725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	43392726	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:75:60
chr1	43392727	.	A	.	.	PASS	END=43392751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	43392752	.	T	.	.	PASS	END=43392772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	43392773	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:68:57:60
chr1	43392774	.	T	.	.	PASS	END=43392807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	43392808	.	A	.	.	PASS	END=43392867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	43392868	.	C	.	.	PASS	END=43392887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	43392888	.	T	.	.	PASS	END=43392929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	43392930	.	A	.	.	PASS	END=43392938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	43392939	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:48:60
chr1	43392940	.	G	.	.	PASS	END=43392950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	43392951	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:30:60
chr1	43392952	.	C	.	.	PASS	END=43392958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:72:60
chr1	43392959	.	C	.	.	PASS	END=43392963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	43393225	.	C	.	.	PASS	END=43393242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	43393243	.	G	.	.	PASS	END=43393245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	43393245	.	G	GGGTGAGAAAT	4947.48	PASS	BaseQRankSum=0.868;DP=85;FS=0.000;HRun=0;HaplotypeScore=103.1591;MQ=60;MQ0=0;MQRankSum=1.942;QD=58.21;ReadPosRankSum=-0.260;SB=-842.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:47,37:85:99:4947,0,4881:60:99:0.440
chr1	43393246	.	G	.	.	PASS	END=43393250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	43393251	.	G	.	.	PASS	END=43393282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	43393283	.	T	.	.	PASS	END=43393324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	43393325	.	G	.	.	PASS	END=43393399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	43393400	.	G	.	.	PASS	END=43393416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	43393417	.	A	.	.	PASS	END=43393466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	43393467	.	A	.	.	PASS	END=43393490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	43393491	.	G	.	.	PASS	END=43393524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	43393525	.	T	.	.	PASS	END=43393530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	43394552	.	G	.	.	PASS	END=43394596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	43394597	.	A	.	.	PASS	END=43394664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	43394665	.	G	.	.	PASS	END=43394718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	43394719	.	A	.	.	PASS	END=43394734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	43394735	.	C	.	.	PASS	END=43394752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	43394753	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:48:60
chr1	43394754	.	A	.	.	PASS	END=43394755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr1	43394800	.	G	.	.	PASS	END=43394844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	43394845	.	G	.	.	PASS	END=43394887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	43394888	.	A	.	.	PASS	END=43394995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	43394996	.	A	.	.	PASS	END=43395037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:86:60
chr1	43395038	.	T	.	.	PASS	END=43395061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:96:60
chr1	43395062	.	A	.	.	PASS	END=43395082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	43395083	.	A	.	.	PASS	END=43395086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	43395087	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:60:60
chr1	43395088	.	G	.	.	PASS	END=43395099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	43395100	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:51:60
chr1	43395101	.	G	.	.	PASS	END=43395109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	43395110	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:66:60
chr1	43395111	.	C	.	.	PASS	END=43395123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:87:60
chr1	43395124	.	T	.	.	PASS	END=43395125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	43395126	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:47:60
chr1	43395127	.	C	.	.	PASS	END=43395136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	43395137	.	T	.	.	PASS	END=43395138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	43395139	.	G	.	.	PASS	END=43395143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	43395144	.	C	.	.	PASS	END=43395166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	43395167	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:54:60
chr1	43395168	.	G	.	.	PASS	END=43395181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr1	43395182	.	T	.	.	PASS	END=43395194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	43395213	.	T	.	.	PASS	END=43395237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	43395238	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:30:60
chr1	43395239	.	A	.	.	PASS	END=43395242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	43395243	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:60:60
chr1	43395244	.	G	.	.	PASS	END=43395251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	43395252	.	G	.	.	PASS	END=43395257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	43395258	.	A	.	.	PASS	END=43395262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	43395263	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:27:60
chr1	43395264	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:57:60
chr1	43395265	.	G	.	.	PASS	END=43395277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	43395278	.	A	.	.	PASS	END=43395283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	43395284	.	G	.	.	PASS	END=43395291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	43395292	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:66:60
chr1	43395293	.	G	.	.	PASS	END=43395308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	43395309	.	G	.	.	PASS	END=43395336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	43395337	.	G	.	.	PASS	END=43395371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	43395372	.	C	.	.	PASS	END=43395459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	43395460	.	A	.	.	PASS	END=43395488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	43395489	.	T	.	.	PASS	END=43395507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	43395508	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:45:60
chr1	43395509	.	A	.	.	PASS	END=43395534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	43395535	.	T	.	.	PASS	END=43395590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	43395591	.	G	.	.	PASS	END=43395636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	43395637	.	G	.	.	PASS	END=43395684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	43395685	.	T	.	.	PASS	END=43395705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	43395706	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:64:62:60
chr1	43395707	.	C	.	.	PASS	END=43395740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:84:60
chr1	43395741	.	T	.	.	PASS	END=43395748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	43395749	.	T	.	.	PASS	END=43395752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:63:60
chr1	43395753	.	C	.	.	PASS	END=43395754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	43395755	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:44:60
chr1	43395756	.	C	.	.	PASS	END=43395757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	43396107	.	G	.	.	PASS	END=43396109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	43396110	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	43396111	.	A	.	.	PASS	END=43396114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	43396115	.	A	.	.	LowGQX	END=43396118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	43396119	.	T	.	.	PASS	END=43396124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	43396125	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	43396126	.	A	.	.	LowGQX	END=43396127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	43396128	.	C	.	.	LowGQX	END=43396129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	43396130	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	43396131	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	43396132	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	43396133	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	43396134	.	G	.	.	PASS	END=43396135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	43396136	.	C	.	.	LowGQX	END=43396139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	43396140	.	G	.	.	PASS	END=43396147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	43396148	.	G	.	.	PASS	END=43396156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	43396157	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	43396158	.	C	.	.	PASS	END=43396160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	43396161	.	G	.	.	PASS	END=43396170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	43396171	.	G	.	.	PASS	END=43396176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	43396177	.	C	.	.	PASS	END=43396178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	43396179	.	C	.	.	PASS	END=43396219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	43396220	.	T	.	.	PASS	END=43396230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	43396231	.	G	.	.	PASS	END=43396264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	43396265	.	G	.	.	PASS	END=43396281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	43396282	.	C	.	.	PASS	END=43396341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	43396342	.	G	.	.	PASS	END=43396362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	43396363	.	T	.	.	PASS	END=43396412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	43396413	.	C	.	.	PASS	END=43396506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	43396507	.	C	.	.	PASS	END=43396561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	43396562	.	C	.	.	PASS	END=43396568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	43396569	.	C	.	.	PASS	END=43396588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	43396666	.	G	.	.	PASS	END=43396690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	43396691	.	G	.	.	PASS	END=43396803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	43396804	.	G	.	.	PASS	END=43396814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	43396815	.	G	.	.	PASS	END=43396840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	43396841	.	G	.	.	PASS	END=43396868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	43396869	.	C	.	.	PASS	END=43396897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	43396898	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:45:60
chr1	43396899	.	G	.	.	PASS	END=43396901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	43396902	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:42:60
chr1	43396903	.	G	.	.	PASS	END=43396916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	43396917	.	C	.	.	PASS	END=43396922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	43396923	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:9:60
chr1	43396924	.	C	.	.	PASS	END=43396927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	43396928	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	43408846	.	G	.	.	PASS	END=43408874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	43408875	.	C	.	.	PASS	END=43408955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	43408956	.	C	.	.	PASS	END=43408975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	43408976	.	A	.	.	PASS	END=43409003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	43409004	.	C	.	.	PASS	END=43409023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:79:60
chr1	43409024	.	G	.	.	PASS	END=43409026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	43409027	.	T	.	.	PASS	END=43409043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	43417994	.	A	.	.	LowGQX	END=43418093	GT	./.
chr1	43424174	.	C	.	.	LowGQX	END=43424183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	43424184	.	C	.	.	LowGQX	END=43424186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	43424187	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	43424188	.	C	.	.	LowGQX	END=43424193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	43424194	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	43424195	.	C	.	.	LowGQX	END=43424199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	43424200	.	G	.	.	LowGQX	END=43424204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	43424205	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	43424206	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:60
chr1	43424207	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:60
chr1	43424208	.	G	.	.	LowGQX	END=43424212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	43424213	.	G	.	.	PASS	END=43424214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	43424215	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	43424216	.	G	.	.	PASS	END=43424224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	43424225	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	43424226	.	G	.	.	PASS	END=43424227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	43424228	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	43424229	.	G	.	.	PASS	END=43424232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	43424233	.	C	.	.	LowGQX	END=43424234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	43424235	.	G	.	.	PASS	END=43424252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	43424253	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	43424254	.	G	.	.	PASS	END=43424263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	43424264	.	C	.	.	PASS	END=43424267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:30:60
chr1	43424268	.	T	.	.	PASS	END=43424276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	43424277	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:9:60
chr1	43424278	.	G	.	.	PASS	END=43424298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr1	43424299	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:30:60
chr1	43424300	.	C	.	.	PASS	END=43424302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	43424303	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:27:60
chr1	43424304	.	C	.	.	PASS	END=43424310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr1	43424311	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:51:60
chr1	43424312	.	C	.	.	PASS	END=43424313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:39:60
chr1	43424314	.	G	.	.	PASS	END=43424321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	43424322	.	T	.	.	PASS	END=43424335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	43424336	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:48:60
chr1	43424337	.	G	.	.	PASS	END=43424365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	43424366	.	T	.	.	PASS	END=43424381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:60
chr1	43424382	.	A	.	.	PASS	END=43424391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chr1	43610894	.	G	.	.	LowGQX	END=43610993	GT	./.
chr1	43613582	.	G	.	.	LowGQX	END=43613755	GT	./.
chr1	43616412	.	G	.	.	LowGQX	END=43616511	GT	./.
chr1	43618498	.	G	.	.	LowGQX	END=43618650	GT	./.
chr1	43621876	.	G	.	.	LowGQX	END=43621984	GT	./.
chr1	43630090	.	G	.	.	LowGQX	END=43630189	GT	./.
chr1	43630312	.	A	.	.	LowGQX	END=43630478	GT	./.
chr1	43632494	.	C	.	.	LowGQX	END=43632644	GT	./.
chr1	43632819	.	A	.	.	LowGQX	END=43632918	GT	./.
chr1	43634605	.	C	.	.	LowGQX	END=43634608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43634609	.	C	.	.	LowGQX	.	GT	./.
chr1	43634610	.	C	.	.	LowGQX	END=43634624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43634625	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43634626	.	C	.	.	LowGQX	.	GT	./.
chr1	43634627	.	T	.	.	LowGQX	END=43634657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43634658	.	C	.	.	LowGQX	.	GT	./.
chr1	43634659	.	C	.	.	LowGQX	END=43634704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43636375	.	T	.	.	LowGQX	END=43636552	GT	./.
chr1	43637148	.	A	.	.	LowGQX	END=43637324	GT	./.
chr1	43637549	.	A	.	.	LowGQX	END=43637607	GT	./.
chr1	43637608	.	C	.	.	LowGQX	END=43637616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43637617	.	C	.	.	LowGQX	.	GT	./.
chr1	43637618	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43637619	.	C	.	.	LowGQX	.	GT	./.
chr1	43637620	.	T	.	.	LowGQX	END=43637621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43637622	.	G	.	.	LowGQX	.	GT	./.
chr1	43637623	.	G	.	.	LowGQX	END=43637640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43637641	.	C	.	.	LowGQX	.	GT	./.
chr1	43637642	.	T	.	.	LowGQX	END=43637648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43637718	.	A	.	.	LowGQX	END=43637729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43637730	.	G	.	.	LowGQX	.	GT	./.
chr1	43637731	.	T	.	.	LowGQX	END=43637741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43637742	.	G	.	.	LowGQX	.	GT	./.
chr1	43637743	.	G	.	.	LowGQX	END=43637754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43637755	.	T	.	.	LowGQX	.	GT	./.
chr1	43637756	.	C	.	.	LowGQX	END=43637760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43637761	.	T	.	.	LowGQX	.	GT	./.
chr1	43637762	.	C	.	.	LowGQX	END=43637765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43637766	.	A	.	.	LowGQX	.	GT	./.
chr1	43637767	.	T	.	.	LowGQX	END=43637769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43637770	.	G	.	.	LowGQX	.	GT	./.
chr1	43637771	.	A	.	.	LowGQX	END=43637804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43637805	.	T	.	.	LowGQX	.	GT	./.
chr1	43637806	.	C	.	.	LowGQX	END=43637808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43637809	.	A	.	.	LowGQX	.	GT	./.
chr1	43637810	.	C	.	.	LowGQX	END=43637817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43637950	.	C	.	.	LowGQX	END=43638084	GT	./.
chr1	43638085	.	G	.	.	LowGQX	END=43638086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43638087	.	A	.	.	LowGQX	.	GT	./.
chr1	43638088	.	T	.	.	LowGQX	END=43638092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43638374	.	C	.	.	PASS	END=43638394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	43638395	.	G	.	.	PASS	END=43638409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	43638410	.	G	C	749.50	PASS	BaseQRankSum=0.402;DP=74;Dels=0.00;FS=1.048;HRun=0;HaplotypeScore=16.1499;MQ=60;MQ0=0;MQRankSum=-0.587;QD=10.13;ReadPosRankSum=-1.272;SB=-290.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:41,33:74:99:779,0,1015:60:99:0.446
chr1	43638411	.	T	.	.	PASS	END=43638456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	43638457	.	T	A	978.19	PASS	BaseQRankSum=2.109;DP=88;Dels=0.00;FS=1.933;HRun=0;HaplotypeScore=8.6800;MQ=60;MQ0=0;MQRankSum=0.355;QD=11.12;ReadPosRankSum=-0.714;SB=-458.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:46,42:88:99:1008,0,1085:60:99:0.477
chr1	43638458	.	T	.	.	PASS	END=43638521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	43638522	.	C	.	.	PASS	END=43638552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	43638553	.	G	.	.	PASS	END=43638602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:78:60
chr1	43638603	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:51:60
chr1	43638604	.	A	.	.	PASS	END=43638625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	43638626	.	A	.	.	PASS	END=43638632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	43642788	.	T	.	.	LowGQX	END=43642887	GT	./.
chr1	43647154	.	C	.	.	PASS	END=43647162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	43647163	.	G	.	.	PASS	END=43647196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	43647197	.	G	.	.	PASS	END=43647204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	43647205	.	G	.	.	PASS	END=43647225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	43647226	.	T	.	.	PASS	END=43647235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	43647236	.	G	.	.	PASS	END=43647266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	43647267	.	A	.	.	PASS	END=43647268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	43647269	.	C	.	.	PASS	END=43647303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	43647304	.	T	.	.	PASS	END=43647371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	43647372	.	A	.	.	PASS	END=43647417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	43647418	.	C	.	.	PASS	END=43647444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	43647445	.	T	.	.	PASS	END=43647475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	43647476	.	A	.	.	PASS	END=43647509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	43647510	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:75:60
chr1	43647511	.	C	.	.	PASS	END=43647517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr1	43647518	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:60
chr1	43647519	.	C	.	.	PASS	END=43647529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	43647530	.	T	.	.	PASS	END=43647532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	43647533	.	T	.	.	PASS	END=43647536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	43647537	.	A	.	.	PASS	END=43647543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	43647544	.	T	.	.	PASS	END=43647545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	43647546	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:6:60
chr1	43647547	.	T	.	.	PASS	END=43647555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	43647556	.	T	.	.	PASS	END=43647559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	43647560	.	A	.	.	PASS	END=43647571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	43647572	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:39:60
chr1	43649211	.	A	.	.	PASS	END=43649228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	43649229	.	A	.	.	PASS	END=43649249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	43649250	.	C	.	.	PASS	END=43649266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	43649267	.	C	.	.	PASS	END=43649278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	43649279	.	G	.	.	PASS	END=43649283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	43649284	.	A	.	.	PASS	END=43649294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	43649295	.	T	.	.	PASS	END=43649314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	43649315	.	G	.	.	PASS	END=43649351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	43649352	.	C	.	.	PASS	END=43649417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	43649418	.	A	.	.	PASS	END=43649440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	43649441	.	C	.	.	PASS	END=43649483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	43649484	.	A	.	.	PASS	END=43649507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	43649508	.	A	G	648.86	PASS	BaseQRankSum=2.124;DP=65;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=0.452;QD=9.98;ReadPosRankSum=-0.654;SB=-170.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:40,25:65:99:679,0,1049:60:99:0.385
chr1	43649509	.	A	.	.	PASS	END=43649530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	43649531	.	C	.	.	PASS	END=43649563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	43649564	.	G	.	.	PASS	END=43649570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr1	43649571	.	T	.	.	PASS	END=43649578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	43649579	.	C	.	.	PASS	END=43649595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	43649596	.	G	.	.	PASS	END=43649599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	43650769	.	T	.	.	PASS	END=43650825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	43650826	.	T	.	.	PASS	END=43651034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	43651035	.	G	.	.	PASS	END=43651078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	43652327	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	43652328	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:21:60
chr1	43652329	.	C	.	51.06	LowGQX	DP=15;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:12:15:21.07:60:21
chr1	43652330	.	A	.	.	PASS	END=43652332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	43652333	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	43652334	.	A	.	.	PASS	END=43652340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	43652341	.	G	.	.	PASS	END=43652343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	43652344	.	G	.	.	PASS	END=43652346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	43652347	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	43652348	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:12:60
chr1	43652349	.	T	.	.	PASS	END=43652366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	43652367	.	A	.	.	PASS	END=43652368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	43652369	.	T	C	958.03	PASS	DP=36;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.3630;MQ=60;MQ0=0;QD=26.61;SB=-455.86	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,33:36:75.24:991,75,0:60:75:1.000
chr1	43652370	.	T	.	.	PASS	END=43652380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	43652381	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:43:60
chr1	43652382	.	C	.	.	PASS	END=43652383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	43652384	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:54:60
chr1	43652385	.	T	.	.	PASS	END=43652392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	43652393	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:66:60
chr1	43652394	.	A	.	.	PASS	END=43652425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	43652426	.	G	.	.	PASS	END=43652498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	43652499	.	G	.	.	PASS	END=43652527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:60
chr1	43652528	.	A	.	.	PASS	END=43652535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	43652536	.	T	.	.	PASS	END=43652557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	43652558	.	A	.	.	PASS	END=43652572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	43652573	.	T	.	.	PASS	END=43652581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	43663173	.	A	.	.	PASS	END=43663183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr1	43663184	.	T	.	.	PASS	END=43663217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	43663218	.	C	.	.	PASS	END=43663256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:84:60
chr1	43663257	.	C	.	.	PASS	END=43663314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	43663315	.	C	.	.	PASS	END=43663339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	43663340	.	C	.	.	PASS	END=43663358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	43663359	.	A	.	.	PASS	END=43663373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	43663374	.	A	.	.	PASS	END=43663375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	43663376	.	A	G	955.49	PASS	DP=31;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=30.82;SB=-431.17	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,31:31:81.23:988,81,0:60:81:1.000
chr1	43663377	.	G	.	.	PASS	END=43663397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	43663398	.	A	.	.	PASS	END=43663403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	43663404	.	C	.	.	PASS	END=43663408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	43663409	.	T	.	.	PASS	END=43663414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	43664101	.	G	.	.	PASS	END=43664118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	43664119	.	A	G	2024.71	PASS	BaseQRankSum=0.818;DP=145;Dels=0.00;FS=2.515;HRun=1;HaplotypeScore=9.5742;MQ=60;MQ0=0;MQRankSum=0.302;QD=13.96;ReadPosRankSum=-0.162;SB=-479.43	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:68,76:145:99:2055,0,1717:60:99:0.528
chr1	43664120	.	G	.	.	PASS	END=43664155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	43664156	.	C	.	.	PASS	END=43664215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	43664216	.	C	.	.	PASS	END=43664217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr1	43664218	.	C	T	3368.21	PASS	BaseQRankSum=3.160;DP=244;Dels=0.00;FS=1.581;HRun=2;HaplotypeScore=9.5542;MQ=60;MQ0=0;MQRankSum=0.797;QD=13.80;ReadPosRankSum=-0.241;SB=-2183.04	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:109,135:244:99:3368,0,2726:60:99:0.553
chr1	43664219	.	T	.	.	PASS	END=43664270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	43664271	.	A	.	.	PASS	END=43664306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	43664307	.	G	.	.	PASS	END=43664314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	43664315	.	G	.	.	PASS	END=43664319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	43664319	.	TA	T	785.09	PASS	BaseQRankSum=-0.315;DP=83;FS=4.889;HRun=10;HaplotypeScore=227.3729;MQ=60;MQ0=0;MQRankSum=-0.702;QD=9.46;ReadPosRankSum=0.393;SB=-204.75	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:49,34:83:99:824,0,923:60:99:0.410
chr1	43664320	.	A	.	129.28	PASS	DP=83;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:49:49:99:60:99
chr1	43664321	.	A	.	.	PASS	END=43664368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	43665010	.	T	.	.	PASS	END=43665026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	43665027	.	T	.	.	PASS	END=43665038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	43665039	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:64:60
chr1	43665040	.	T	.	.	PASS	END=43665052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	43665053	.	C	.	.	PASS	END=43665152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	43665153	.	C	.	.	PASS	END=43665173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	43665174	.	G	.	.	PASS	END=43665184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	43665185	.	G	.	.	PASS	END=43665190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	43665191	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:57:60
chr1	43665192	.	C	.	.	PASS	END=43665202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	43665203	.	C	.	.	PASS	END=43665222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	43665223	.	A	.	.	PASS	END=43665225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	43672340	.	G	.	.	PASS	END=43672341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:54:60
chr1	43672342	.	G	.	.	PASS	END=43672350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	43672351	.	T	.	.	PASS	END=43672367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:59
chr1	43672368	.	G	.	.	PASS	END=43672381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:59
chr1	43672382	.	C	.	.	PASS	END=43672387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	43672388	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:76:60
chr1	43672389	.	A	.	.	PASS	END=43672422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:87:60
chr1	43672423	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:67:75:60
chr1	43672424	.	A	.	.	PASS	END=43672440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	43672441	.	C	.	.	PASS	END=43672465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	43672466	.	A	.	.	PASS	END=43672594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	43672595	.	G	.	.	PASS	END=43672616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	43672617	.	T	.	.	PASS	END=43672635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	43672636	.	T	G	1011.96	PASS	BaseQRankSum=1.388;DP=72;Dels=0.00;FS=1.088;HRun=2;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-0.977;QD=14.05;ReadPosRankSum=1.354;SB=-368.57	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,42:72:99:1042,0,688:60:99:0.583
chr1	43672637	.	G	.	.	PASS	END=43672653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	43672654	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:87:60
chr1	43675363	.	T	.	.	PASS	END=43675370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	43675371	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:19:60
chr1	43675372	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:69:60
chr1	43675373	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:51:60
chr1	43675374	.	G	.	.	PASS	END=43675378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	43675379	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:0:60
chr1	43675380	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:63:60
chr1	43675381	.	C	.	.	PASS	END=43675390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:80:60
chr1	43675391	.	G	.	.	PASS	END=43675414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	43675415	.	T	.	.	PASS	END=43675442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	43675443	.	C	.	.	PASS	END=43675466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	43675467	.	G	A	2824.03	PASS	DP=111;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=10.5090;MQ=60;MQ0=0;QD=25.44;SB=-1465.79	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,109:111:99:2857,214,0:60:99:1.000
chr1	43675468	.	C	.	.	PASS	END=43675541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	43675542	.	G	.	.	PASS	END=43675576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	43675577	.	C	.	.	PASS	END=43675604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	43675605	.	C	.	.	PASS	END=43675625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	43675626	.	C	.	.	PASS	END=43675637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	43675638	.	T	.	.	PASS	END=43675645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	43675646	.	T	.	.	PASS	END=43675662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	43675663	.	C	.	.	PASS	END=43675667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	43675668	.	T	.	.	PASS	END=43675677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	43675678	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:39:60
chr1	43675679	.	T	.	.	PASS	END=43675680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	43675681	.	C	.	.	PASS	END=43675689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	43675690	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:51:60
chr1	43675691	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	43675692	.	T	.	.	PASS	END=43675707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	43675708	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:9:60
chr1	43675709	.	A	.	.	PASS	END=43675729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	43675730	.	T	.	.	PASS	END=43675733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	43675734	.	T	.	.	PASS	END=43675737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	43675738	.	A	.	.	PASS	END=43675745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	43675746	.	C	.	.	PASS	END=43675749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	43675750	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	43675751	.	T	.	.	PASS	END=43675762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	43675763	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:2:60
chr1	43675764	.	C	.	.	PASS	END=43675778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	43675779	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr1	43675780	.	G	.	.	PASS	END=43675784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	43675785	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	43675786	.	A	.	.	PASS	END=43675792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	43675793	.	A	.	.	LowGQX	END=43675794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	43675795	.	A	.	.	PASS	END=43675809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	43675810	.	T	.	.	LowGQX	END=43675812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	43675813	.	A	.	.	PASS	END=43675815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	43675816	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	43675817	.	C	.	.	PASS	END=43675819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	43675820	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	43675821	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	43675822	.	T	.	.	LowGQX	END=43675823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	43675824	.	A	.	.	PASS	END=43675827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	43680915	.	T	.	.	PASS	END=43681015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	43681016	.	G	.	.	PASS	END=43681046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	43681047	.	C	.	.	PASS	END=43681048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:72:60
chr1	43681049	.	G	.	.	PASS	END=43681087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	43685052	.	G	.	.	PASS	END=43685081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	43685082	.	T	.	.	PASS	END=43685130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	43685131	.	A	.	.	PASS	END=43685196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	43685197	.	A	.	.	PASS	END=43685265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	43687020	.	G	.	.	PASS	END=43687045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	43687046	.	T	.	.	PASS	END=43687136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	43687775	.	G	.	.	PASS	END=43687815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	43687816	.	G	.	.	PASS	END=43687966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	43688494	.	G	.	.	PASS	END=43688518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	43688519	.	C	.	.	PASS	END=43688548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	43688549	.	A	.	.	PASS	END=43688644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	43688645	.	G	.	.	PASS	END=43688668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	43689716	.	G	.	.	PASS	END=43689743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	43689744	.	G	.	.	PASS	END=43689788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	43689789	.	C	.	.	PASS	END=43689819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	43689820	.	A	.	.	PASS	END=43689860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	43689861	.	A	.	.	PASS	END=43689875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	43692653	.	G	.	.	PASS	END=43692761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:60
chr1	43692762	.	A	.	.	PASS	END=43692789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	43692790	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:57:60
chr1	43692791	.	T	.	.	PASS	END=43692797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	43697706	.	C	.	.	PASS	END=43697775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	43697776	.	C	.	.	PASS	END=43697835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	43698157	.	T	.	.	PASS	END=43698217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	43698218	.	C	.	.	PASS	END=43698295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	43699949	.	G	.	.	PASS	END=43699978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	43699979	.	G	.	.	PASS	END=43699996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	43699997	.	C	.	.	PASS	END=43700084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	43700165	.	G	.	.	PASS	END=43700260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:259:99:60
chr1	43700261	.	G	.	.	PASS	END=43700290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	43700291	.	C	.	.	PASS	END=43700297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	43700298	.	C	.	.	PASS	END=43700309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	43708887	.	C	.	.	PASS	END=43708972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	43708973	.	C	.	.	PASS	END=43709002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	43709003	.	G	.	.	PASS	END=43709030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	43719647	.	G	.	.	PASS	END=43719668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	43719669	.	G	.	.	PASS	END=43719734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	43719735	.	T	.	.	PASS	END=43719776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	43719777	.	A	.	.	PASS	END=43719796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	43719797	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:59:28:60
chr1	43719798	.	T	.	.	PASS	END=43719800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	43719801	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:73:60
chr1	43719802	.	T	.	.	PASS	END=43719820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:78:60
chr1	43719821	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:67:60
chr1	43719822	.	T	.	.	PASS	END=43719848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	43719849	.	T	.	.	PASS	END=43719854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	43719855	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:46:60
chr1	43719856	.	C	.	.	PASS	END=43719862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	43738392	.	C	.	.	LowGQX	END=43738513	GT	./.
chr1	43738514	.	G	.	.	LowGQX	END=43738524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738525	.	C	.	.	LowGQX	.	GT	./.
chr1	43738526	.	G	.	.	LowGQX	END=43738529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738530	.	C	.	.	LowGQX	.	GT	./.
chr1	43738531	.	A	.	.	LowGQX	END=43738554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738555	.	A	.	.	LowGQX	.	GT	./.
chr1	43738556	.	C	.	.	LowGQX	END=43738564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738565	.	A	.	.	LowGQX	.	GT	./.
chr1	43738566	.	C	.	.	LowGQX	END=43738567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738568	.	A	.	.	LowGQX	.	GT	./.
chr1	43738569	.	C	.	.	LowGQX	END=43738584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738585	.	T	.	.	LowGQX	.	GT	./.
chr1	43738586	.	G	.	.	LowGQX	END=43738599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738600	.	A	.	.	LowGQX	.	GT	./.
chr1	43738601	.	A	.	.	LowGQX	END=43738605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738606	.	C	.	.	LowGQX	.	GT	./.
chr1	43738607	.	A	.	.	LowGQX	END=43738612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738613	.	C	.	.	LowGQX	.	GT	./.
chr1	43738614	.	T	.	.	LowGQX	END=43738624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738625	.	G	.	.	LowGQX	.	GT	./.
chr1	43738626	.	C	.	.	LowGQX	END=43738636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738637	.	C	.	.	LowGQX	.	GT	./.
chr1	43738638	.	T	.	.	LowGQX	END=43738643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738644	.	A	.	.	LowGQX	END=43738645	GT	./.
chr1	43738646	.	C	.	.	LowGQX	END=43738662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738663	.	T	.	.	LowGQX	END=43738665	GT	./.
chr1	43738666	.	G	.	.	LowGQX	END=43738669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738670	.	G	.	.	LowGQX	.	GT	./.
chr1	43738671	.	A	.	.	LowGQX	END=43738674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738675	.	G	.	.	LowGQX	END=43738676	GT	./.
chr1	43738677	.	A	.	.	LowGQX	END=43738679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738680	.	G	.	.	LowGQX	.	GT	./.
chr1	43738681	.	C	.	.	LowGQX	END=43738682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738683	.	T	.	.	LowGQX	.	GT	./.
chr1	43738684	.	C	.	.	LowGQX	END=43738697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738698	.	A	.	.	LowGQX	END=43738701	GT	./.
chr1	43738702	.	G	.	.	LowGQX	END=43738706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738707	.	T	.	.	LowGQX	.	GT	./.
chr1	43738708	.	G	.	.	LowGQX	END=43738716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738717	.	T	.	.	LowGQX	.	GT	./.
chr1	43738718	.	G	.	.	LowGQX	END=43738719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738720	.	T	.	.	LowGQX	.	GT	./.
chr1	43738721	.	G	.	.	LowGQX	END=43738724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738725	.	G	.	.	LowGQX	.	GT	./.
chr1	43738726	.	G	.	.	LowGQX	END=43738736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738737	.	T	.	.	LowGQX	.	GT	./.
chr1	43738738	.	C	.	.	LowGQX	END=43738742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738743	.	T	.	.	LowGQX	.	GT	./.
chr1	43738744	.	G	.	.	LowGQX	END=43738748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738749	.	T	.	.	LowGQX	.	GT	./.
chr1	43738750	.	C	.	.	LowGQX	END=43738752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738753	.	T	.	.	LowGQX	.	GT	./.
chr1	43738754	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738755	.	G	.	.	LowGQX	.	GT	./.
chr1	43738756	.	C	.	.	LowGQX	END=43738769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738770	.	T	.	.	LowGQX	.	GT	./.
chr1	43738771	.	C	.	.	LowGQX	END=43738784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738785	.	T	.	.	LowGQX	.	GT	./.
chr1	43738786	.	G	.	.	LowGQX	END=43738803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43738804	.	C	.	.	LowGQX	END=43739055	GT	./.
chr1	43748454	.	G	.	.	LowGQX	END=43748455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43748456	.	T	.	.	LowGQX	.	GT	./.
chr1	43748457	.	C	.	.	LowGQX	END=43748465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43748466	.	A	.	.	LowGQX	END=43748575	GT	./.
chr1	43748576	.	C	.	.	LowGQX	END=43748579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43748580	.	C	.	.	LowGQX	END=43748581	GT	./.
chr1	43748582	.	T	.	.	LowGQX	END=43748589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43748590	.	G	.	.	LowGQX	.	GT	./.
chr1	43748591	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43748592	.	A	.	.	LowGQX	END=43748593	GT	./.
chr1	43748594	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43748595	.	G	.	.	LowGQX	.	GT	./.
chr1	43748596	.	G	.	.	LowGQX	END=43748600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43748601	.	T	.	.	LowGQX	.	GT	./.
chr1	43748602	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43748603	.	C	.	.	LowGQX	.	GT	./.
chr1	43748604	.	C	.	.	LowGQX	END=43748612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43748613	.	G	.	.	LowGQX	.	GT	./.
chr1	43748614	.	C	.	.	LowGQX	END=43748615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43748616	.	T	.	.	LowGQX	.	GT	./.
chr1	43748617	.	G	.	.	LowGQX	END=43748629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43748630	.	G	.	.	LowGQX	.	GT	./.
chr1	43748631	.	A	.	.	LowGQX	END=43748636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43748637	.	C	.	.	LowGQX	END=43748638	GT	./.
chr1	43748639	.	T	.	.	LowGQX	END=43748650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43748651	.	T	.	.	LowGQX	END=43748652	GT	./.
chr1	43748653	.	C	.	.	LowGQX	END=43748677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43748678	.	C	.	.	LowGQX	.	GT	./.
chr1	43748679	.	C	.	.	LowGQX	END=43748726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43748727	.	G	.	.	LowGQX	END=43748780	GT	./.
chr1	43748883	.	G	.	.	LowGQX	END=43748982	GT	./.
chr1	43766722	.	G	.	.	LowGQX	END=43766821	GT	./.
chr1	43770520	.	A	.	.	LowGQX	END=43770681	GT	./.
chr1	43770682	.	G	.	.	LowGQX	END=43770719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43770720	.	A	.	.	LowGQX	.	GT	./.
chr1	43770721	.	C	.	.	LowGQX	END=43770745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43770746	.	A	.	.	LowGQX	.	GT	./.
chr1	43770747	.	A	.	.	LowGQX	END=43770755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43770756	.	A	.	.	LowGQX	.	GT	./.
chr1	43770757	.	C	.	.	LowGQX	END=43770801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43770802	.	C	.	.	LowGQX	END=43770803	GT	./.
chr1	43770804	.	C	.	.	LowGQX	END=43770806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43770807	.	G	.	.	LowGQX	.	GT	./.
chr1	43770808	.	C	.	.	LowGQX	END=43770809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43770810	.	T	.	.	LowGQX	.	GT	./.
chr1	43770811	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43770812	.	A	.	.	LowGQX	.	GT	./.
chr1	43770813	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43770814	.	C	.	.	LowGQX	.	GT	./.
chr1	43770815	.	T	.	.	LowGQX	END=43770820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43770821	.	C	.	.	LowGQX	END=43770822	GT	./.
chr1	43770823	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43770824	.	A	.	.	LowGQX	.	GT	./.
chr1	43770825	.	A	.	.	LowGQX	END=43770826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43770827	.	A	.	.	LowGQX	.	GT	./.
chr1	43770828	.	G	.	.	LowGQX	END=43770830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43770831	.	C	.	.	LowGQX	END=43770871	GT	./.
chr1	43770872	.	A	.	.	LowGQX	END=43770875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43770876	.	G	.	.	LowGQX	.	GT	./.
chr1	43770877	.	G	.	.	LowGQX	END=43770881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43770882	.	T	.	.	LowGQX	.	GT	./.
chr1	43770883	.	G	.	.	LowGQX	END=43770891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43770892	.	T	.	.	LowGQX	.	GT	./.
chr1	43770893	.	C	.	.	LowGQX	END=43770925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43770926	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	43770927	.	A	.	.	LowGQX	END=43770946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43770947	.	T	.	.	LowGQX	.	GT	./.
chr1	43770948	.	G	.	.	LowGQX	END=43770970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43770971	.	T	.	.	LowGQX	.	GT	./.
chr1	43770972	.	G	.	.	LowGQX	END=43770996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43770997	.	T	.	.	LowGQX	.	GT	./.
chr1	43770998	.	G	.	.	LowGQX	END=43771016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772509	.	A	.	.	LowGQX	END=43772617	GT	./.
chr1	43772618	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772619	.	T	.	.	LowGQX	END=43772623	GT	./.
chr1	43772624	.	G	.	.	LowGQX	END=43772626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772627	.	A	.	.	LowGQX	END=43772628	GT	./.
chr1	43772629	.	C	.	.	LowGQX	END=43772631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772632	.	C	.	.	LowGQX	END=43772635	GT	./.
chr1	43772636	.	G	.	.	LowGQX	END=43772637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772638	.	C	.	.	LowGQX	.	GT	./.
chr1	43772639	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772640	.	G	.	.	LowGQX	END=43772646	GT	./.
chr1	43772647	.	C	.	.	LowGQX	END=43772649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772650	.	T	.	.	LowGQX	.	GT	./.
chr1	43772651	.	C	.	.	LowGQX	END=43772654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772655	.	T	.	.	LowGQX	END=43772656	GT	./.
chr1	43772657	.	A	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	43772658	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772659	.	C	.	.	LowGQX	.	GT	./.
chr1	43772660	.	G	.	.	LowGQX	END=43772661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772662	.	G	.	.	LowGQX	.	GT	./.
chr1	43772663	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772664	.	G	.	.	LowGQX	.	GT	./.
chr1	43772665	.	G	.	.	LowGQX	END=43772668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772669	.	C	.	.	LowGQX	.	GT	./.
chr1	43772670	.	A	.	.	LowGQX	END=43772673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772674	.	G	.	.	LowGQX	END=43772676	GT	./.
chr1	43772677	.	G	.	.	LowGQX	END=43772680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772681	.	G	.	.	LowGQX	.	GT	./.
chr1	43772682	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772683	.	A	.	.	LowGQX	END=43772685	GT	./.
chr1	43772686	.	G	.	.	LowGQX	END=43772688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772689	.	T	.	.	LowGQX	.	GT	./.
chr1	43772690	.	G	.	.	LowGQX	END=43772699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772700	.	T	.	.	LowGQX	.	GT	./.
chr1	43772701	.	G	.	.	LowGQX	END=43772707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772708	.	T	.	.	LowGQX	.	GT	./.
chr1	43772709	.	G	.	.	LowGQX	END=43772714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772715	.	C	.	.	LowGQX	END=43772716	GT	./.
chr1	43772717	.	T	.	.	LowGQX	END=43772735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772736	.	T	.	.	LowGQX	END=43772737	GT	./.
chr1	43772738	.	C	.	.	LowGQX	END=43772742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772743	.	G	.	.	LowGQX	.	GT	./.
chr1	43772744	.	A	.	.	LowGQX	END=43772768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43772769	.	G	.	.	LowGQX	END=43772782	GT	./.
chr1	43772811	.	A	.	.	LowGQX	END=43772946	GT	./.
chr1	43773101	.	A	.	.	LowGQX	END=43773204	GT	./.
chr1	43773205	.	C	.	.	LowGQX	END=43773245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43773465	.	A	.	.	LowGQX	END=43773597	GT	./.
chr1	43774541	.	G	.	.	LowGQX	END=43774576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43774577	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43774578	.	A	.	.	LowGQX	END=43774604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43774605	.	G	.	.	LowGQX	END=43774640	GT	./.
chr1	43774655	.	A	.	.	LowGQX	END=43774804	GT	./.
chr1	43775057	.	A	.	.	LowGQX	END=43775205	GT	./.
chr1	43777340	.	A	.	.	LowGQX	END=43777502	GT	./.
chr1	43777663	.	A	.	.	LowGQX	END=43777804	GT	./.
chr1	43777974	.	A	.	.	LowGQX	END=43778208	GT	./.
chr1	43778209	.	C	.	.	LowGQX	END=43778212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43778213	.	A	.	.	LowGQX	.	GT	./.
chr1	43778214	.	C	.	.	LowGQX	END=43778274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43778804	.	A	.	.	LowGQX	END=43778887	GT	./.
chr1	43778888	.	G	.	.	LowGQX	END=43779047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43779048	.	G	.	.	LowGQX	.	GT	./.
chr1	43779049	.	G	.	.	LowGQX	END=43779060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43779061	.	G	.	.	LowGQX	.	GT	./.
chr1	43779062	.	G	.	.	LowGQX	END=43779070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43779071	.	A	.	.	LowGQX	END=43779134	GT	./.
chr1	43779447	.	A	.	.	LowGQX	END=43779468	GT	./.
chr1	43779469	.	G	.	.	LowGQX	END=43779535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	43779536	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	43779537	.	G	.	.	LowGQX	END=43779563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	43779564	.	T	C	6.77	LowGQX;LowQD	BaseQRankSum=-1.380;DP=6;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=-1.380;QD=1.13;ReadPosRankSum=-0.720;SB=-30.29	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:4,2:6:35.74:36,0,81:60:7:0.333
chr1	43779565	.	G	.	.	LowGQX	END=43779635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	43779636	.	C	.	.	LowGQX	END=43779640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43779641	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43779642	.	C	.	.	LowGQX	END=43779662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43779663	.	G	.	.	LowGQX	.	GT	./.
chr1	43779664	.	G	.	.	LowGQX	END=43779673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43779674	.	G	.	.	LowGQX	.	GT	./.
chr1	43779675	.	C	.	.	LowGQX	END=43779708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43779709	.	A	.	.	LowGQX	END=43779801	GT	./.
chr1	43782797	.	G	.	.	LowGQX	END=43782799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43782800	.	T	.	.	LowGQX	.	GT	./.
chr1	43782801	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43782802	.	T	.	.	LowGQX	.	GT	./.
chr1	43782803	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43782804	.	T	.	.	LowGQX	END=43782806	GT	./.
chr1	43782807	.	G	.	.	LowGQX	END=43782809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43782810	.	T	.	.	LowGQX	.	GT	./.
chr1	43782811	.	C	.	.	LowGQX	END=43782824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43782825	.	T	.	.	LowGQX	.	GT	./.
chr1	43782826	.	G	.	.	LowGQX	END=43782835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43782836	.	T	.	.	LowGQX	.	GT	./.
chr1	43782837	.	G	.	.	LowGQX	END=43782842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43782843	.	T	.	.	LowGQX	.	GT	./.
chr1	43782844	.	C	.	.	LowGQX	END=43782845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43782846	.	G	.	.	LowGQX	.	GT	./.
chr1	43782847	.	C	.	.	LowGQX	END=43782852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43782853	.	T	.	.	LowGQX	.	GT	./.
chr1	43782854	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	43782855	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43782856	.	C	.	.	LowGQX	END=43782911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43782912	.	C	.	.	LowGQX	.	GT	./.
chr1	43782913	.	T	.	.	LowGQX	END=43782955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43782956	.	A	.	.	LowGQX	.	GT	./.
chr1	43782957	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43782958	.	T	.	.	LowGQX	.	GT	./.
chr1	43782959	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43782960	.	C	.	.	LowGQX	.	GT	./.
chr1	43782961	.	T	.	.	LowGQX	END=43782967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43782968	.	G	.	.	LowGQX	.	GT	./.
chr1	43782969	.	G	.	.	LowGQX	END=43782970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43782971	.	G	.	.	LowGQX	END=43782972	GT	./.
chr1	43782973	.	A	.	.	LowGQX	END=43782974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43782975	.	A	.	.	LowGQX	.	GT	./.
chr1	43782976	.	T	.	.	LowGQX	END=43782977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43782978	.	A	.	.	LowGQX	.	GT	./.
chr1	43782979	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43782980	.	C	.	.	LowGQX	END=43782981	GT	./.
chr1	43782982	.	T	.	.	LowGQX	END=43782988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43782989	.	C	.	.	LowGQX	.	GT	./.
chr1	43782990	.	C	.	.	LowGQX	END=43782999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43783000	.	A	.	.	LowGQX	.	GT	./.
chr1	43783001	.	G	.	.	LowGQX	END=43783002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43783003	.	G	.	.	LowGQX	.	GT	./.
chr1	43783004	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43783005	.	A	.	.	LowGQX	END=43783091	GT	./.
chr1	43783092	.	C	.	.	LowGQX	END=43783093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43783094	.	A	.	.	LowGQX	.	GT	./.
chr1	43783095	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43783096	.	C	.	.	LowGQX	.	GT	./.
chr1	43783097	.	C	.	.	LowGQX	END=43783098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43783099	.	T	.	.	LowGQX	.	GT	./.
chr1	43783100	.	G	.	.	LowGQX	END=43783112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43783113	.	T	.	.	LowGQX	.	GT	./.
chr1	43783114	.	G	.	.	LowGQX	END=43783122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43783123	.	T	.	.	LowGQX	.	GT	./.
chr1	43783124	.	G	.	.	LowGQX	END=43783126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43783127	.	C	.	.	LowGQX	.	GT	./.
chr1	43783128	.	C	.	.	LowGQX	END=43783132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43783133	.	A	.	.	LowGQX	.	GT	./.
chr1	43783134	.	T	.	.	LowGQX	END=43783135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43783136	.	C	.	.	LowGQX	.	GT	./.
chr1	43783137	.	C	.	.	LowGQX	END=43783139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43783140	.	G	.	.	LowGQX	.	GT	./.
chr1	43783141	.	C	.	.	LowGQX	END=43783146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43783233	.	A	.	.	LowGQX	END=43783242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43783243	.	T	.	.	LowGQX	END=43783347	GT	./.
chr1	43783540	.	C	.	.	LowGQX	END=43783663	GT	./.
chr1	43783664	.	C	.	.	LowGQX	END=43783740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43783741	.	C	.	.	LowGQX	.	GT	./.
chr1	43783742	.	A	.	.	LowGQX	END=43783745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43784904	.	A	.	.	LowGQX	END=43784955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	43784956	.	A	G	45.06	PASS	BaseQRankSum=-0.358;DP=5;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=1.231;QD=9.01;ReadPosRankSum=0.358;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,3:5:35.74:75,0,36:60:36:0.600
chr1	43784957	.	G	.	.	LowGQX	END=43785021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	43785116	.	C	.	.	LowGQX	END=43785147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43785148	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	43785149	.	G	.	.	LowGQX	END=43785160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	43785161	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	43785162	.	G	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	43785163	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:3:60
chr1	43785164	.	C	.	.	LowGQX	END=43785166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	43785167	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	43785168	.	G	.	.	LowGQX	END=43785195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	43785196	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	43785197	.	A	.	.	LowGQX	END=43785207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	43785208	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	43785209	.	G	.	.	LowGQX	END=43785210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	43785211	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	43785212	.	A	.	.	LowGQX	END=43785215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	43786911	.	G	.	.	LowGQX	END=43787010	GT	./.
chr1	43787065	.	A	.	.	LowGQX	END=43787089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43787090	.	A	.	.	LowGQX	.	GT	./.
chr1	43787091	.	C	.	.	LowGQX	END=43787113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43787114	.	C	.	.	LowGQX	.	GT	./.
chr1	43787115	.	T	.	.	LowGQX	END=43787135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43787136	.	A	.	.	LowGQX	.	GT	./.
chr1	43787137	.	G	.	.	LowGQX	END=43787165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43787285	.	A	.	.	LowGQX	END=43787287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43787288	.	T	.	.	LowGQX	END=43787388	GT	./.
chr1	43788308	.	T	.	.	LowGQX	END=43788407	GT	./.
chr1	43803469	.	C	.	.	PASS	END=43803489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	43803490	.	G	.	.	PASS	END=43803621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	43803622	.	T	.	.	PASS	END=43803640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	43803641	.	G	.	.	PASS	END=43803649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	43803719	.	A	.	.	PASS	END=43803764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	43803765	.	C	.	.	PASS	END=43803807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	43803808	.	T	.	.	PASS	END=43803915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	43803916	.	T	.	.	PASS	END=43803942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	43803943	.	C	.	.	PASS	END=43803953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	43804162	.	T	.	.	PASS	END=43804182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	43804183	.	G	.	.	PASS	END=43804200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	43804201	.	C	.	.	PASS	END=43804246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	43804247	.	A	.	.	PASS	END=43804348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	43804349	.	A	.	.	PASS	END=43804387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	43804388	.	G	.	.	PASS	END=43804394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	43804395	.	A	.	.	PASS	END=43804399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	43804400	.	C	.	.	PASS	END=43804410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	43804411	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:33:60
chr1	43804412	.	A	.	.	PASS	END=43804415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	43804416	.	T	.	.	PASS	END=43804420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	43804421	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:3:60
chr1	43804422	.	C	.	.	PASS	END=43804423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	43804424	.	C	.	.	PASS	END=43804428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	43804429	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:60
chr1	43804430	.	G	.	.	PASS	END=43804431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	43804432	.	T	.	.	PASS	END=43804442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	43804891	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:45:60
chr1	43804892	.	G	.	.	PASS	END=43804913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:72:60
chr1	43804914	.	G	.	.	PASS	END=43804928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr1	43804929	.	G	.	.	PASS	END=43804935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	43804936	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr1	43804937	.	C	.	.	PASS	END=43804954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	43804955	.	C	.	.	PASS	END=43804972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	43804973	.	C	.	.	PASS	END=43804997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	43804998	.	C	.	.	PASS	END=43805108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	43805109	.	C	.	.	PASS	END=43805141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	43805142	.	C	.	.	PASS	END=43805157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	43805158	.	C	.	.	PASS	END=43805171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	43805172	.	C	.	.	PASS	END=43805182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	43805183	.	T	.	.	PASS	END=43805189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	43805190	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:33:60
chr1	43805191	.	C	.	.	PASS	END=43805197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	43805198	.	G	.	.	PASS	END=43805216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	43805217	.	A	.	.	PASS	END=43805222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	43805223	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	43805224	.	C	.	.	PASS	END=43805236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	43805237	.	A	.	.	PASS	END=43805242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	43805243	.	A	.	.	PASS	END=43805252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	43805253	.	T	.	.	PASS	END=43805262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	43805263	.	C	.	.	PASS	END=43805272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	43805273	.	C	.	.	PASS	END=43805277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	43805278	.	A	.	.	PASS	END=43805284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	43805285	.	A	.	.	PASS	END=43805286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	43805287	.	C	.	.	PASS	END=43805291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	43805584	.	T	.	.	PASS	END=43805617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	43805618	.	G	.	.	PASS	END=43805642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	43805643	.	T	.	.	PASS	END=43805744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	43805745	.	C	.	.	PASS	END=43805785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	43805786	.	C	.	.	PASS	END=43805805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	43805806	.	A	.	.	PASS	END=43805839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	43805840	.	A	.	.	PASS	END=43805848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	43806007	.	T	.	.	PASS	END=43806065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	43806066	.	G	.	.	PASS	END=43806155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	43806156	.	A	.	.	PASS	END=43806168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	43806169	.	G	.	.	PASS	END=43806199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	43806200	.	C	.	.	PASS	END=43806224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	43806225	.	T	.	.	PASS	END=43806235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	43812065	.	T	.	.	PASS	END=43812068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	43812069	.	T	.	.	PASS	END=43812074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	43812075	.	G	A	471.69	PASS	BaseQRankSum=2.063;DP=21;Dels=0.00;FS=3.493;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-0.584;QD=22.46;ReadPosRankSum=-0.740;SB=-30.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:6,15:21:99:502,0,105:60:99:0.714
chr1	43812076	.	G	.	.	PASS	END=43812086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	43812087	.	T	.	.	PASS	END=43812088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	43812089	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:33:60
chr1	43812090	.	A	.	.	PASS	END=43812101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	43812102	.	G	.	.	PASS	END=43812107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	43812108	.	G	.	.	PASS	END=43812116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	43812117	.	T	.	.	PASS	END=43812246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	43812247	.	C	.	.	PASS	END=43812255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	43812256	.	C	.	.	PASS	END=43812266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	43812267	.	T	.	.	PASS	END=43812308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	43812309	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:47:60
chr1	43812310	.	T	.	.	PASS	END=43812332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	43812333	.	G	.	.	PASS	END=43812338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	43812339	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:66:60
chr1	43812340	.	C	.	.	PASS	END=43812351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	43812412	.	A	.	.	PASS	END=43812434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	43812435	.	A	.	.	PASS	END=43812453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	43812454	.	T	.	.	PASS	END=43812515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	43812516	.	G	.	.	PASS	END=43812595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	43812596	.	G	.	.	PASS	END=43812623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	43812624	.	T	.	.	PASS	END=43812647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	43812648	.	G	.	.	PASS	END=43812656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:83:60
chr1	43814463	.	G	.	.	PASS	END=43814487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	43814488	.	G	.	.	PASS	END=43814502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	43814503	.	T	.	.	PASS	END=43814555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	43814556	.	C	.	.	PASS	END=43814644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	43814645	.	A	.	.	PASS	END=43814662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	43814663	.	C	.	.	PASS	END=43814690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	43814691	.	C	.	.	PASS	END=43814706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	43814707	.	A	.	.	PASS	END=43814724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	43814883	.	G	.	.	PASS	END=43814941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	43814942	.	T	.	.	PASS	END=43814984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:89:60
chr1	43814985	.	T	.	.	PASS	END=43815006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:60
chr1	43815007	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:90:60
chr1	43815008	.	T	.	.	PASS	END=43815015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	43815016	.	T	.	.	PASS	END=43815021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr1	43815022	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:84:60
chr1	43815023	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:53:60
chr1	43815024	.	A	.	.	PASS	END=43815039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	43815040	.	C	.	.	PASS	END=43815044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	43815045	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:42:60
chr1	43815046	.	G	.	.	PASS	END=43815047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	43815048	.	C	.	.	PASS	END=43815049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	43815050	.	G	.	.	PASS	END=43815051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	43815052	.	A	.	.	PASS	END=43815056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	43815057	.	G	.	.	PASS	END=43815070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	43815071	.	T	.	.	PASS	END=43815074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	43815075	.	G	.	.	PASS	END=43815091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	43815092	.	A	.	.	PASS	END=43815103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	43815104	.	T	.	.	PASS	END=43815105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	43815106	.	C	.	.	PASS	END=43815108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	43815109	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	43815110	.	C	.	.	PASS	END=43815122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	43817836	.	C	.	.	PASS	END=43817849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	43817850	.	G	.	.	PASS	END=43817877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	43817878	.	C	.	.	PASS	END=43817994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	43817995	.	T	.	.	PASS	END=43818020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	43818021	.	A	.	.	PASS	END=43818025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	43818138	.	C	.	.	PASS	END=43818148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	43818149	.	G	.	.	PASS	END=43818157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	43818158	.	T	.	.	PASS	END=43818164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	43818165	.	A	.	.	PASS	END=43818171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	43818172	.	C	.	.	PASS	END=43818186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	43818187	.	A	.	.	PASS	END=43818198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	43818199	.	C	.	.	PASS	END=43818212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	43818213	.	T	.	.	PASS	END=43818303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:84:60
chr1	43818304	.	A	.	.	PASS	END=43818348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:79:60
chr1	43818349	.	C	.	.	PASS	END=43818353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	43818354	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:75:60
chr1	43818355	.	G	.	.	PASS	END=43818390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	43818391	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:48:60
chr1	43818392	.	C	.	.	PASS	END=43818397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	43818398	.	T	.	.	PASS	END=43818419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	43818420	.	C	.	.	PASS	END=43818433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	43818434	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:18:60
chr1	43818435	.	C	.	.	PASS	END=43818446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr1	43818447	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:42:60
chr1	43818448	.	A	.	.	PASS	END=43818450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	43818451	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:3:60
chr1	43818452	.	T	.	.	PASS	END=43818457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	43818458	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	43818459	.	T	.	.	PASS	END=43818461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	43818462	.	C	.	.	LowGQX	END=43818464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	43818465	.	T	.	.	LowGQX	END=43818466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	43818467	.	C	.	.	LowGQX	END=43818471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	43818472	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	43818473	.	A	.	.	LowGQX	END=43818474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	43818475	.	A	.	.	LowGQX	END=43818476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	43818477	.	A	.	.	LowGQX	END=43818490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	43818491	.	G	.	.	LowGQX	END=43818494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	43824865	.	C	.	.	LowGQX	END=43825069	GT	./.
chr1	43825159	.	A	.	.	LowGQX	END=43825311	GT	./.
chr1	43825394	.	A	.	.	LowGQX	END=43825494	GT	./.
chr1	43825638	.	A	.	.	LowGQX	END=43825643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43825644	.	T	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	43825645	.	C	.	.	LowGQX	END=43825725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43825726	.	C	.	.	LowGQX	.	GT	./.
chr1	43825727	.	C	.	.	LowGQX	END=43825738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43825739	.	T	.	.	LowGQX	END=43825770	GT	./.
chr1	43825862	.	A	.	.	LowGQX	END=43825978	GT	./.
chr1	43825979	.	G	.	.	LowGQX	END=43826012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826013	.	A	.	.	LowGQX	.	GT	./.
chr1	43826014	.	A	.	.	LowGQX	END=43826022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826023	.	A	.	.	LowGQX	.	GT	./.
chr1	43826024	.	C	.	.	LowGQX	END=43826044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826045	.	C	.	.	LowGQX	.	GT	./.
chr1	43826046	.	A	.	.	LowGQX	END=43826062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826168	.	A	.	.	LowGQX	END=43826172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826173	.	T	.	.	LowGQX	END=43826174	GT	./.
chr1	43826175	.	G	.	.	LowGQX	END=43826177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826178	.	T	.	.	LowGQX	.	GT	./.
chr1	43826179	.	G	.	.	LowGQX	END=43826183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826184	.	G	.	.	LowGQX	.	GT	./.
chr1	43826185	.	C	.	.	LowGQX	END=43826192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826193	.	A	.	.	LowGQX	.	GT	./.
chr1	43826194	.	C	.	.	LowGQX	END=43826197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826198	.	T	.	.	LowGQX	.	GT	./.
chr1	43826199	.	T	.	.	LowGQX	END=43826205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826206	.	A	.	.	LowGQX	.	GT	./.
chr1	43826207	.	T	.	.	LowGQX	END=43826208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826209	.	A	.	.	LowGQX	.	GT	./.
chr1	43826210	.	C	.	.	LowGQX	END=43826213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826214	.	T	.	.	LowGQX	.	GT	./.
chr1	43826215	.	C	.	.	LowGQX	END=43826225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826226	.	A	.	.	LowGQX	.	GT	./.
chr1	43826227	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826228	.	T	.	.	LowGQX	END=43826229	GT	./.
chr1	43826230	.	G	.	.	LowGQX	END=43826241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826242	.	T	.	.	LowGQX	.	GT	./.
chr1	43826243	.	G	.	.	LowGQX	END=43826247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826248	.	A	.	.	LowGQX	.	GT	./.
chr1	43826249	.	G	.	.	LowGQX	END=43826267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43826402	.	A	.	.	LowGQX	END=43826455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43826456	.	C	.	.	LowGQX	END=43826499	GT	./.
chr1	43826500	.	G	.	.	LowGQX	END=43826534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826535	.	G	.	.	LowGQX	END=43826536	GT	./.
chr1	43826537	.	G	.	.	LowGQX	END=43826559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826560	.	G	.	.	LowGQX	.	GT	./.
chr1	43826561	.	T	.	.	LowGQX	END=43826587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826588	.	T	.	.	LowGQX	.	GT	./.
chr1	43826589	.	G	.	.	LowGQX	END=43826616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826617	.	T	.	.	LowGQX	.	GT	./.
chr1	43826618	.	C	.	.	LowGQX	END=43826634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43826748	.	G	.	.	LowGQX	END=43826845	GT	./.
chr1	43826846	.	G	.	.	LowGQX	END=43826918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43827864	.	A	.	.	LowGQX	END=43827984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43827985	.	T	.	.	LowGQX	.	GT	./.
chr1	43828620	.	A	.	.	LowGQX	END=43828730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43828731	.	T	.	.	LowGQX	END=43828859	GT	./.
chr1	43829585	.	T	.	.	LowGQX	END=43829588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43829589	.	A	.	.	LowGQX	.	GT	./.
chr1	43829590	.	G	.	.	LowGQX	END=43829592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43829593	.	G	.	.	LowGQX	.	GT	./.
chr1	43829594	.	G	.	.	LowGQX	END=43829599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43829600	.	A	.	.	LowGQX	.	GT	./.
chr1	43829601	.	C	.	.	LowGQX	END=43829632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43829633	.	A	.	.	LowGQX	.	GT	./.
chr1	43829634	.	G	.	.	LowGQX	END=43829656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43829657	.	T	.	.	LowGQX	.	GT	./.
chr1	43829658	.	T	.	.	LowGQX	END=43829675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43829676	.	A	.	.	LowGQX	.	GT	./.
chr1	43829677	.	G	.	.	LowGQX	END=43829694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43829695	.	G	.	.	LowGQX	.	GT	./.
chr1	43829696	.	A	.	.	LowGQX	END=43829715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43829716	.	C	.	.	LowGQX	.	GT	./.
chr1	43829717	.	C	.	.	LowGQX	END=43829720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43829721	.	T	.	.	LowGQX	END=43829810	GT	./.
chr1	43829993	.	A	.	.	LowGQX	END=43829995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43829996	.	A	.	.	LowGQX	END=43830133	GT	./.
chr1	43830211	.	A	.	.	LowGQX	END=43830320	GT	./.
chr1	43830388	.	A	.	.	LowGQX	END=43830487	GT	./.
chr1	43830590	.	C	.	.	LowGQX	END=43830689	GT	./.
chr1	43830855	.	A	.	.	LowGQX	END=43830913	GT	./.
chr1	43830914	.	G	.	.	LowGQX	END=43831029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43831030	.	A	.	.	LowGQX	END=43831049	GT	./.
chr1	43831208	.	G	.	.	LowGQX	.	GT	./.
chr1	43831209	.	G	.	.	LowGQX	END=43831210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	43831211	.	A	.	.	LowGQX	.	GT	./.
chr1	43831212	.	A	.	.	LowGQX	END=43831262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43831263	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	43831264	.	T	.	.	LowGQX	END=43831281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	43831282	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	43831283	.	T	.	.	LowGQX	END=43831298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	43831299	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	43831300	.	G	.	.	LowGQX	END=43831307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43850120	.	T	.	.	LowGQX	END=43850216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43850217	.	G	.	.	LowGQX	END=43850223	GT	./.
chr1	43850695	.	C	.	.	LowGQX	END=43850794	GT	./.
chr1	43851648	.	C	.	.	LowGQX	END=43851741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43851742	.	T	.	.	LowGQX	.	GT	./.
chr1	43851743	.	T	.	.	LowGQX	END=43851753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43851754	.	T	.	.	LowGQX	.	GT	./.
chr1	43851755	.	C	.	.	LowGQX	END=43851785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43851786	.	G	.	.	LowGQX	END=43851897	GT	./.
chr1	43852251	.	C	.	.	LowGQX	END=43852350	GT	./.
chr1	43852528	.	C	.	.	LowGQX	END=43852669	GT	./.
chr1	43853173	.	C	.	.	LowGQX	END=43853318	GT	./.
chr1	43853980	.	C	.	.	LowGQX	END=43854099	GT	./.
chr1	43855383	.	T	.	.	LowGQX	END=43855482	GT	./.
chr1	43855544	.	C	.	.	LowGQX	END=43855642	GT	./.
chr1	43855643	.	G	.	.	LowGQX	END=43855703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43868846	.	A	.	.	LowGQX	END=43868975	GT	./.
chr1	43869271	.	G	.	.	LowGQX	END=43869447	GT	./.
chr1	43870049	.	A	.	.	LowGQX	END=43870174	GT	./.
chr1	43870175	.	T	.	.	LowGQX	END=43870223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43871866	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43871867	.	T	.	.	LowGQX	END=43871870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43871871	.	G	.	.	LowGQX	.	GT	./.
chr1	43871872	.	C	.	.	LowGQX	END=43871902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43871903	.	T	.	.	LowGQX	END=43872005	GT	./.
chr1	43872006	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43872007	.	G	.	.	LowGQX	END=43872010	GT	./.
chr1	43872011	.	C	.	.	LowGQX	END=43872012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43872013	.	C	.	.	LowGQX	.	GT	./.
chr1	43872014	.	C	.	.	LowGQX	END=43872020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43872021	.	A	.	.	LowGQX	.	GT	./.
chr1	43872022	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43872023	.	C	.	.	LowGQX	.	GT	./.
chr1	43872024	.	C	.	.	LowGQX	END=43872025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43875119	.	A	.	.	LowGQX	END=43875218	GT	./.
chr1	43880752	.	G	.	.	LowGQX	END=43880808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43880809	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	43880810	.	A	.	.	LowGQX	END=43880884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43881630	.	G	.	.	LowGQX	END=43881772	GT	./.
chr1	43882205	.	G	.	.	LowGQX	END=43882273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43882274	.	C	.	.	LowGQX	END=43882312	GT	./.
chr1	43885404	.	G	.	.	LowGQX	END=43885551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43885552	.	C	.	.	LowGQX	END=43885582	GT	./.
chr1	43885583	.	G	.	.	LowGQX	END=43885608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43885609	.	T	.	.	LowGQX	.	GT	./.
chr1	43885610	.	A	.	.	LowGQX	END=43885615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43885823	.	G	.	.	LowGQX	END=43885985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43885986	.	T	.	.	LowGQX	END=43885994	GT	./.
chr1	43886419	.	G	.	.	LowGQX	END=43886493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43886494	.	C	T	9.31	LowGQ;LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=-0.736;SB=-33.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:25.53:39,0,26:60:9:0.667
chr1	43886495	.	C	.	.	LowGQX	END=43886498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	43886499	.	G	T	3.07	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.02;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.11:30,0,39:60:3:0.333
chr1	43886500	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	43886501	.	C	.	.	LowGQX	END=43886534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43886535	.	G	T	4.97	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.49;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:25.53:33,0,26:60:5:0.500
chr1	43886536	.	G	.	.	LowGQX	END=43886561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43886562	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43886563	.	A	.	.	LowGQX	END=43886629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43886630	.	G	.	.	LowGQX	END=43886631	GT	./.
chr1	43886632	.	C	.	.	LowGQX	END=43886639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43886640	.	G	.	.	LowGQX	.	GT	./.
chr1	43886641	.	A	.	.	LowGQX	END=43886645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43886646	.	G	.	.	LowGQX	.	GT	./.
chr1	43886647	.	C	.	.	LowGQX	END=43886648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43886649	.	G	.	.	LowGQX	END=43886650	GT	./.
chr1	43886651	.	A	.	.	LowGQX	END=43886654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43886804	.	G	.	.	LowGQX	END=43886874	GT	./.
chr1	43886875	.	C	.	.	LowGQX	END=43886974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43887753	.	G	.	.	LowGQX	END=43887896	GT	./.
chr1	43888150	.	G	.	.	LowGQX	.	GT	./.
chr1	43888151	.	A	.	.	LowGQX	END=43888154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43888155	.	A	.	.	LowGQX	.	GT	./.
chr1	43888156	.	T	.	.	LowGQX	END=43888206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43888207	.	A	.	.	LowGQX	END=43888303	GT	./.
chr1	43888439	.	G	.	.	LowGQX	END=43888554	GT	./.
chr1	43888734	.	T	.	.	LowGQX	END=43888987	GT	./.
chr1	43889887	.	G	.	.	LowGQX	END=43890103	GT	./.
chr1	43890445	.	G	.	.	LowGQX	END=43890544	GT	./.
chr1	43890782	.	A	.	.	LowGQX	END=43890881	GT	./.
chr1	43891143	.	A	.	.	LowGQX	END=43891315	GT	./.
chr1	43891504	.	A	.	.	LowGQX	END=43891622	GT	./.
chr1	43891707	.	A	.	.	LowGQX	END=43891824	GT	./.
chr1	43892069	.	C	.	.	LowGQX	END=43892168	GT	./.
chr1	43892384	.	A	.	.	LowGQX	END=43892483	GT	./.
chr1	43892725	.	A	.	.	LowGQX	END=43892852	GT	./.
chr1	43892950	.	A	.	.	LowGQX	END=43893118	GT	./.
chr1	43893199	.	A	.	.	LowGQX	END=43893244	GT	./.
chr1	43893245	.	G	.	.	LowGQX	END=43893306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43893307	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	43893308	.	C	.	.	LowGQX	END=43893407	GT	./.
chr1	43893672	.	A	.	.	LowGQX	END=43893791	GT	./.
chr1	43893909	.	A	.	.	LowGQX	END=43894159	GT	./.
chr1	43895372	.	A	.	.	LowGQX	END=43895410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43895411	.	A	.	.	LowGQX	.	GT	./.
chr1	43895412	.	G	.	.	LowGQX	END=43895427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43895428	.	C	.	.	LowGQX	END=43895462	GT	./.
chr1	43895463	.	A	.	.	LowGQX	END=43895517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43895679	.	C	.	.	LowGQX	END=43895778	GT	./.
chr1	43895912	.	T	.	.	LowGQX	END=43896071	GT	./.
chr1	43896165	.	A	.	.	LowGQX	END=43896435	GT	./.
chr1	43896436	.	G	.	.	LowGQX	END=43896462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43896618	.	A	.	.	LowGQX	END=43896686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43896687	.	G	.	.	LowGQX	END=43896763	GT	./.
chr1	43896934	.	A	.	.	LowGQX	END=43896936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43896937	.	T	.	.	LowGQX	.	GT	./.
chr1	43896938	.	C	.	.	LowGQX	END=43896959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43896960	.	A	.	.	LowGQX	.	GT	./.
chr1	43896961	.	T	.	.	LowGQX	END=43896984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43896985	.	T	.	.	LowGQX	END=43897018	GT	./.
chr1	43897019	.	C	.	.	LowGQX	END=43897045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43897113	.	A	.	.	LowGQX	END=43897169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43897170	.	G	.	.	LowGQX	END=43897212	GT	./.
chr1	43897385	.	A	.	.	LowGQX	END=43897574	GT	./.
chr1	43897941	.	A	.	.	LowGQX	END=43898112	GT	./.
chr1	43898182	.	C	.	.	LowGQX	END=43898186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43898187	.	G	.	.	LowGQX	.	GT	./.
chr1	43898188	.	A	.	.	LowGQX	END=43898193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43898194	.	A	.	.	LowGQX	.	GT	./.
chr1	43898195	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43898196	.	A	.	.	LowGQX	.	GT	./.
chr1	43898197	.	G	.	.	LowGQX	END=43898206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43898207	.	A	.	.	LowGQX	.	GT	./.
chr1	43898208	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43898209	.	G	.	.	LowGQX	.	GT	./.
chr1	43898210	.	C	.	.	LowGQX	END=43898213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43898214	.	T	.	.	LowGQX	.	GT	./.
chr1	43898215	.	G	.	.	LowGQX	END=43898219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43898220	.	C	.	.	LowGQX	.	GT	./.
chr1	43898221	.	C	.	.	LowGQX	END=43898241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43898242	.	C	.	.	LowGQX	.	GT	./.
chr1	43898243	.	C	.	.	LowGQX	END=43898281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43898385	.	C	.	.	LowGQX	END=43898441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43898442	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43898443	.	C	.	.	LowGQX	END=43898448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43898449	.	A	.	.	LowGQX	END=43898484	GT	./.
chr1	43898658	.	A	.	.	LowGQX	END=43898863	GT	./.
chr1	43899997	.	A	.	.	LowGQX	END=43900214	GT	./.
chr1	43900869	.	A	.	.	LowGQX	END=43901002	GT	./.
chr1	43902840	.	A	.	.	LowGQX	END=43902846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	43902847	.	G	T	9.30	LowGQX	BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=-0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr1	43902848	.	C	.	.	LowGQX	END=43902985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43902986	.	T	.	.	LowGQX	.	GT	./.
chr1	43902987	.	C	.	.	LowGQX	END=43902996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903075	.	A	.	.	LowGQX	END=43903181	GT	./.
chr1	43903264	.	A	.	.	LowGQX	END=43903265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903266	.	G	.	.	LowGQX	.	GT	./.
chr1	43903267	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903268	.	T	.	.	LowGQX	.	GT	./.
chr1	43903269	.	C	.	.	LowGQX	END=43903272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903273	.	G	.	.	LowGQX	END=43903278	GT	./.
chr1	43903279	.	T	.	.	LowGQX	END=43903280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903281	.	C	.	.	LowGQX	END=43903282	GT	./.
chr1	43903283	.	G	.	.	LowGQX	END=43903285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903286	.	G	.	.	LowGQX	.	GT	./.
chr1	43903287	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903288	.	G	.	.	LowGQX	.	GT	./.
chr1	43903289	.	A	.	.	LowGQX	END=43903291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903292	.	G	.	.	LowGQX	.	GT	./.
chr1	43903293	.	G	.	.	LowGQX	END=43903295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903296	.	A	.	.	LowGQX	.	GT	./.
chr1	43903297	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903298	.	G	.	.	LowGQX	END=43903300	GT	./.
chr1	43903301	.	A	.	.	LowGQX	END=43903302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903303	.	G	.	.	LowGQX	END=43903306	GT	./.
chr1	43903307	.	A	.	.	LowGQX	END=43903310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903311	.	G	.	.	LowGQX	END=43903313	GT	./.
chr1	43903314	.	G	.	.	LowGQX	END=43903315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903316	.	C	.	.	LowGQX	END=43903318	GT	./.
chr1	43903319	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903320	.	T	.	.	LowGQX	.	GT	./.
chr1	43903321	.	T	.	.	LowGQX	END=43903323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903324	.	C	.	.	LowGQX	END=43903325	GT	./.
chr1	43903326	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903327	.	G	.	.	LowGQX	.	GT	./.
chr1	43903328	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903329	.	T	.	.	LowGQX	.	GT	./.
chr1	43903330	.	C	.	.	LowGQX	END=43903333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903334	.	C	.	.	LowGQX	.	GT	./.
chr1	43903335	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903336	.	C	.	.	LowGQX	END=43903339	GT	./.
chr1	43903340	.	G	.	.	LowGQX	END=43903343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903344	.	A	.	.	LowGQX	.	GT	./.
chr1	43903345	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903346	.	A	.	.	LowGQX	.	GT	./.
chr1	43903347	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903348	.	C	.	.	LowGQX	.	GT	./.
chr1	43903349	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903350	.	C	.	.	LowGQX	END=43903352	GT	./.
chr1	43903353	.	C	.	.	LowGQX	END=43903354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903355	.	A	.	.	LowGQX	END=43903373	GT	./.
chr1	43903460	.	A	.	.	LowGQX	END=43903470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43903471	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43903472	.	C	.	.	LowGQX	END=43903552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903553	.	T	.	.	LowGQX	.	GT	./.
chr1	43903554	.	C	.	.	LowGQX	END=43903558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903559	.	G	.	.	LowGQX	END=43903560	GT	./.
chr1	43903561	.	G	.	.	LowGQX	END=43903565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43903566	.	G	.	.	LowGQX	.	GT	./.
chr1	43903567	.	C	.	.	LowGQX	END=43903575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43904318	.	G	.	.	LowGQX	END=43904443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43904444	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	43904445	.	T	.	.	LowGQX	END=43904450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43904451	.	T	.	.	LowGQX	END=43904490	GT	./.
chr1	43904598	.	A	.	.	LowGQX	END=43904687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43904688	.	G	.	.	LowGQX	.	GT	./.
chr1	43904689	.	G	.	.	LowGQX	END=43904701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43904702	.	A	.	.	LowGQX	END=43904766	GT	./.
chr1	43904962	.	G	.	.	LowGQX	END=43905076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	43905077	.	T	.	.	LowGQX	END=43905107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43905108	.	G	.	.	LowGQX	END=43905121	GT	./.
chr1	43905244	.	A	.	.	LowGQX	END=43905442	GT	./.
chr1	43905550	.	A	.	.	LowGQX	.	GT	./.
chr1	43905551	.	G	.	.	LowGQX	END=43905731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43906122	.	A	.	.	LowGQX	END=43906141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43906142	.	C	.	.	LowGQX	.	GT	./.
chr1	43906143	.	G	.	.	LowGQX	END=43906158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43906159	.	T	.	.	LowGQX	.	GT	./.
chr1	43906160	.	C	.	.	LowGQX	END=43906167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43906168	.	C	.	.	LowGQX	.	GT	./.
chr1	43906169	.	G	.	.	LowGQX	END=43906204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43906205	.	A	.	.	LowGQX	END=43906259	GT	./.
chr1	43906883	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43906884	.	G	.	.	LowGQX	END=43906885	GT	./.
chr1	43906886	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43906887	.	T	.	.	LowGQX	.	GT	./.
chr1	43906888	.	A	.	.	LowGQX	END=43906889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43906890	.	A	.	.	LowGQX	.	GT	./.
chr1	43906891	.	A	.	.	LowGQX	END=43906894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43906895	.	A	.	.	LowGQX	.	GT	./.
chr1	43906896	.	A	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	43906897	.	T	.	.	LowGQX	END=43906907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43906908	.	G	.	.	LowGQX	END=43906940	GT	./.
chr1	43906941	.	G	.	.	LowGQX	END=43906947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43906948	.	C	.	.	LowGQX	.	GT	./.
chr1	43906949	.	C	.	.	LowGQX	END=43906973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43906974	.	T	.	.	LowGQX	.	GT	./.
chr1	43906975	.	C	.	.	LowGQX	END=43906979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43906980	.	A	.	.	LowGQX	.	GT	./.
chr1	43906981	.	A	.	.	LowGQX	END=43906990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43906991	.	T	.	.	LowGQX	.	GT	./.
chr1	43906992	.	T	.	.	LowGQX	END=43907025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43907026	.	T	.	.	LowGQX	.	GT	./.
chr1	43907027	.	C	.	.	LowGQX	END=43907053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43907173	.	A	.	.	LowGQX	END=43907274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43907355	.	A	.	.	LowGQX	END=43907491	GT	./.
chr1	43907669	.	A	.	.	LowGQX	END=43907803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43907937	.	A	.	.	LowGQX	END=43908041	GT	./.
chr1	43908111	.	A	.	.	LowGQX	END=43908291	GT	./.
chr1	43908488	.	A	.	.	LowGQX	END=43908693	GT	./.
chr1	43908694	.	C	.	.	LowGQX	END=43908759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43908849	.	C	.	.	LowGQX	END=43908948	GT	./.
chr1	43909021	.	A	.	.	LowGQX	END=43909150	GT	./.
chr1	43909266	.	A	.	.	LowGQX	END=43909390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43909391	.	C	.	.	LowGQX	.	GT	./.
chr1	43909392	.	T	.	.	LowGQX	END=43909393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43909394	.	C	.	.	LowGQX	END=43909469	GT	./.
chr1	43911473	.	A	.	.	LowGQX	END=43911488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43911489	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43911490	.	A	.	.	LowGQX	END=43911508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43911509	.	C	.	.	LowGQX	.	GT	./.
chr1	43911510	.	A	.	.	LowGQX	END=43911515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43911516	.	G	.	.	LowGQX	.	GT	./.
chr1	43911517	.	C	.	.	LowGQX	END=43911522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43911523	.	A	.	.	LowGQX	.	GT	./.
chr1	43911524	.	C	.	.	LowGQX	END=43911531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43911532	.	C	.	.	LowGQX	.	GT	./.
chr1	43911533	.	C	.	.	LowGQX	END=43911550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43911551	.	C	.	.	LowGQX	.	GT	./.
chr1	43911552	.	T	.	.	LowGQX	END=43911566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43911567	.	C	.	.	LowGQX	.	GT	./.
chr1	43911568	.	C	.	.	LowGQX	END=43911596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43911597	.	G	.	.	LowGQX	.	GT	./.
chr1	43911598	.	A	.	.	LowGQX	END=43911636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43911637	.	G	.	.	LowGQX	.	GT	./.
chr1	43911638	.	A	.	.	LowGQX	END=43911639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43911640	.	T	.	.	LowGQX	END=43911657	GT	./.
chr1	43911841	.	T	.	.	LowGQX	END=43911940	GT	./.
chr1	43912001	.	C	.	.	LowGQX	END=43912100	GT	./.
chr1	43912624	.	A	.	.	LowGQX	END=43912636	GT	./.
chr1	43912637	.	G	.	.	LowGQX	END=43912764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43912765	.	T	.	.	LowGQX	END=43912841	GT	./.
chr1	43913214	.	A	.	.	LowGQX	END=43913371	GT	./.
chr1	43913518	.	A	.	.	LowGQX	END=43913529	GT	./.
chr1	43913530	.	T	.	.	LowGQX	END=43913534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43913535	.	G	.	.	LowGQX	.	GT	./.
chr1	43913536	.	G	.	.	LowGQX	END=43913581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43913582	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	43913583	.	T	.	.	LowGQX	END=43913593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	43913594	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	43913595	.	T	.	.	LowGQX	END=43913639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	43913640	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	43913641	.	C	.	.	LowGQX	END=43913644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	43913748	.	A	.	.	LowGQX	END=43913768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43913769	.	C	.	.	LowGQX	END=43914094	GT	./.
chr1	43914095	.	G	.	.	LowGQX	END=43914107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914108	.	C	.	.	LowGQX	.	GT	./.
chr1	43914109	.	T	.	.	LowGQX	END=43914112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914113	.	A	.	.	LowGQX	.	GT	./.
chr1	43914114	.	G	.	.	LowGQX	END=43914117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914118	.	T	.	.	LowGQX	.	GT	./.
chr1	43914119	.	C	.	.	LowGQX	END=43914125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914126	.	A	.	.	LowGQX	END=43914128	GT	./.
chr1	43914129	.	T	.	.	LowGQX	END=43914130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914131	.	C	.	.	LowGQX	END=43914132	GT	./.
chr1	43914133	.	T	.	.	LowGQX	END=43914136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914137	.	G	.	.	LowGQX	END=43914138	GT	./.
chr1	43914139	.	A	.	.	LowGQX	END=43914141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914142	.	T	.	.	LowGQX	.	GT	./.
chr1	43914143	.	C	.	.	LowGQX	END=43914144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914145	.	A	.	.	LowGQX	.	GT	./.
chr1	43914146	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914147	.	C	.	.	LowGQX	.	GT	./.
chr1	43914148	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914149	.	C	.	.	LowGQX	.	GT	./.
chr1	43914150	.	C	.	.	LowGQX	END=43914151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914152	.	G	.	.	LowGQX	END=43914154	GT	./.
chr1	43914155	.	G	.	.	LowGQX	END=43914157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914281	.	A	.	.	LowGQX	END=43914347	GT	./.
chr1	43914348	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914349	.	C	.	.	LowGQX	.	GT	./.
chr1	43914350	.	C	.	.	LowGQX	END=43914351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914352	.	C	.	.	LowGQX	.	GT	./.
chr1	43914353	.	A	.	.	LowGQX	END=43914359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914360	.	T	.	.	LowGQX	.	GT	./.
chr1	43914361	.	C	.	.	LowGQX	END=43914372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914373	.	A	.	.	LowGQX	.	GT	./.
chr1	43914374	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914375	.	C	.	.	LowGQX	END=43914376	GT	./.
chr1	43914377	.	C	.	.	LowGQX	END=43914380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914381	.	C	.	.	LowGQX	END=43914382	GT	./.
chr1	43914383	.	T	.	.	LowGQX	END=43914384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914385	.	G	.	.	LowGQX	END=43914386	GT	./.
chr1	43914387	.	A	.	.	LowGQX	END=43914400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43914401	.	T	.	.	LowGQX	.	GT	./.
chr1	43915759	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43915760	.	A	.	.	LowGQX	.	GT	./.
chr1	43915761	.	T	.	.	LowGQX	END=43915763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43915764	.	T	.	.	LowGQX	.	GT	./.
chr1	43915765	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43915766	.	C	.	.	LowGQX	.	GT	./.
chr1	43915767	.	A	.	.	LowGQX	END=43915772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43915773	.	G	.	.	LowGQX	.	GT	./.
chr1	43915774	.	G	.	.	LowGQX	END=43915778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43915779	.	G	.	.	LowGQX	.	GT	./.
chr1	43915780	.	C	.	.	LowGQX	END=43915782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43915783	.	A	.	.	LowGQX	END=43915784	GT	./.
chr1	43915785	.	T	.	.	LowGQX	END=43915788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43915789	.	A	.	.	LowGQX	.	GT	./.
chr1	43915790	.	A	.	.	LowGQX	END=43915793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43915794	.	C	.	.	LowGQX	END=43915795	GT	./.
chr1	43915796	.	C	.	.	LowGQX	END=43915797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43915798	.	G	.	.	LowGQX	END=43915800	GT	./.
chr1	43915801	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43915802	.	G	.	.	LowGQX	END=43915804	GT	./.
chr1	43915805	.	T	.	.	LowGQX	END=43915808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43915809	.	G	.	.	LowGQX	END=43915810	GT	./.
chr1	43915811	.	T	.	.	LowGQX	END=43915818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43915819	.	C	.	.	LowGQX	END=43915820	GT	./.
chr1	43915821	.	G	.	.	LowGQX	END=43915823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43915824	.	C	.	.	LowGQX	.	GT	./.
chr1	43915825	.	T	.	.	LowGQX	END=43915832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43915833	.	A	.	.	LowGQX	.	GT	./.
chr1	43915834	.	G	.	.	LowGQX	END=43915837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43915838	.	A	.	.	LowGQX	END=43915839	GT	./.
chr1	43915840	.	A	.	.	LowGQX	END=43915842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43915843	.	G	.	.	LowGQX	END=43915845	GT	./.
chr1	43915846	.	A	.	.	LowGQX	END=43915849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43915850	.	C	.	.	LowGQX	END=43915851	GT	./.
chr1	43915852	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43915853	.	G	.	.	LowGQX	.	GT	./.
chr1	43915854	.	T	.	.	LowGQX	END=43915855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43915856	.	G	.	.	LowGQX	.	GT	./.
chr1	43915857	.	G	.	.	LowGQX	END=43915858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916006	.	A	.	.	LowGQX	END=43916010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916011	.	C	.	.	LowGQX	.	GT	./.
chr1	43916012	.	T	.	.	LowGQX	END=43916017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916018	.	T	.	.	LowGQX	END=43916019	GT	./.
chr1	43916020	.	G	.	.	LowGQX	END=43916021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916022	.	T	.	.	LowGQX	.	GT	./.
chr1	43916023	.	T	.	.	LowGQX	END=43916037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916038	.	C	.	.	LowGQX	.	GT	./.
chr1	43916039	.	C	.	.	LowGQX	END=43916040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916041	.	G	.	.	LowGQX	.	GT	./.
chr1	43916042	.	T	.	.	LowGQX	END=43916044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916045	.	A	.	.	LowGQX	END=43916046	GT	./.
chr1	43916047	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916048	.	C	.	.	LowGQX	.	GT	./.
chr1	43916049	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916050	.	C	.	.	LowGQX	.	GT	./.
chr1	43916051	.	A	.	.	LowGQX	END=43916056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916057	.	G	.	.	LowGQX	.	GT	./.
chr1	43916058	.	C	.	.	LowGQX	END=43916062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916063	.	G	.	.	LowGQX	END=43916064	GT	./.
chr1	43916065	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916066	.	C	.	.	LowGQX	.	GT	./.
chr1	43916067	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916068	.	C	.	.	LowGQX	.	GT	./.
chr1	43916069	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916070	.	T	.	.	LowGQX	.	GT	./.
chr1	43916071	.	G	.	.	LowGQX	END=43916074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916075	.	A	.	.	LowGQX	END=43916153	GT	./.
chr1	43916510	.	C	.	.	LowGQX	END=43916568	GT	./.
chr1	43916569	.	G	.	.	LowGQX	END=43916612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916613	.	C	.	.	LowGQX	.	GT	./.
chr1	43916614	.	A	.	.	LowGQX	END=43916640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916641	.	G	.	.	LowGQX	.	GT	./.
chr1	43916642	.	T	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	43916643	.	G	.	.	LowGQX	END=43916670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916671	.	A	.	.	LowGQX	.	GT	./.
chr1	43916672	.	C	.	.	LowGQX	END=43916681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916682	.	C	.	.	LowGQX	.	GT	./.
chr1	43916683	.	T	.	.	LowGQX	END=43916699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916700	.	G	.	.	LowGQX	.	GT	./.
chr1	43916701	.	G	.	.	LowGQX	END=43916708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916709	.	A	.	.	LowGQX	END=43916710	GT	./.
chr1	43916711	.	C	.	.	LowGQX	END=43916712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916713	.	C	.	.	LowGQX	.	GT	./.
chr1	43916714	.	T	.	.	LowGQX	END=43916719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916720	.	C	.	.	LowGQX	END=43916776	GT	./.
chr1	43916896	.	G	.	.	LowGQX	END=43916908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916909	.	T	.	.	LowGQX	.	GT	./.
chr1	43916910	.	C	.	.	LowGQX	END=43916927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43916928	.	T	.	.	LowGQX	END=43916995	GT	./.
chr1	43917009	.	C	.	.	LowGQX	END=43917217	GT	./.
chr1	43917304	.	G	.	.	LowGQX	END=43917403	GT	./.
chr1	43917444	.	C	.	.	LowGQX	END=43917457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43917458	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	43917459	.	T	.	.	LowGQX	END=43917543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	43917596	.	G	.	.	LowGQX	END=43917682	GT	./.
chr1	43917683	.	T	.	.	LowGQX	END=43917695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43917874	.	A	.	.	LowGQX	END=43918100	GT	./.
chr1	43918573	.	C	.	.	LowGQX	END=43918675	GT	./.
chr1	43919002	.	G	.	.	LowGQX	END=43919010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43919011	.	T	.	.	LowGQX	END=43919047	GT	./.
chr1	43919048	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43919049	.	C	.	.	LowGQX	.	GT	./.
chr1	43919050	.	G	.	.	LowGQX	END=43919053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43919054	.	T	.	.	LowGQX	.	GT	./.
chr1	43919055	.	A	.	.	LowGQX	END=43919103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	43919104	.	C	.	.	LowGQX	END=43919168	GT	./.
chr1	43919264	.	A	.	.	LowGQX	END=43919464	GT	./.
chr1	43998154	.	C	.	.	LowGQX	END=43998299	GT	./.
chr1	43998300	.	T	.	.	LowGQX	END=43998301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:32
chr1	43998302	.	T	.	.	LowGQX	.	GT	./.
chr1	43998303	.	G	.	.	LowGQX	END=43998304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:32
chr1	43998305	.	G	.	.	LowGQX	END=43998308	GT	./.
chr1	43998309	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:32
chr1	43998310	.	C	.	5.68	LowGQX	DP=1;MQ=32;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:32:0
chr1	43998311	.	C	.	.	LowGQX	END=43998313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:32
chr1	44010743	.	C	.	.	PASS	END=44010762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	44010763	.	C	.	.	PASS	END=44010842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	44019161	.	A	.	.	PASS	END=44019205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	44019206	.	G	.	.	PASS	END=44019242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	44019243	.	G	.	.	PASS	END=44019268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	44019269	.	G	.	.	PASS	END=44019310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	44019469	.	A	.	.	PASS	END=44019538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	44019539	.	A	.	.	PASS	END=44019559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	44019560	.	T	.	.	PASS	END=44019603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	44019604	.	T	.	.	PASS	END=44019614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	44035259	.	A	.	.	PASS	END=44035286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	44035287	.	T	.	.	PASS	END=44035351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:257:99:60
chr1	44035352	.	C	T	2593.23	PASS	BaseQRankSum=3.162;DP=266;Dels=0.00;FS=0.979;HRun=0;HaplotypeScore=13.3619;MQ=60;MQ0=0;MQRankSum=-0.464;QD=9.75;ReadPosRankSum=0.109;SB=-1596.79	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:147,117:266:99:2623,0,3480:60:99:0.443
chr1	44035353	.	G	.	.	PASS	END=44035427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	44035428	.	C	.	.	PASS	END=44035451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	44041540	.	G	.	.	LowGQX	END=44041639	GT	./.
chr1	44044479	.	A	.	.	PASS	END=44044518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	44044519	.	G	.	.	PASS	END=44044575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	44044576	.	A	.	.	PASS	END=44044612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	44044613	.	G	.	.	PASS	END=44044632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	44044633	.	T	.	.	PASS	END=44044642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	44044643	.	C	.	.	PASS	END=44044666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	44044667	.	C	.	.	PASS	END=44044679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	44044680	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:33:60
chr1	44044681	.	G	.	.	PASS	END=44044690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	44044691	.	G	.	.	PASS	END=44044694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	44044695	.	T	.	.	PASS	END=44044699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	44044700	.	C	.	.	PASS	END=44044705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	44044706	.	T	.	.	PASS	END=44044717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	44044718	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	44044719	.	G	.	.	PASS	END=44044720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	44044721	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	44044722	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	44044723	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	44044724	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	44044725	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	44044726	.	T	.	.	PASS	END=44044727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	44044728	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	44044729	.	G	.	.	PASS	END=44044730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	44044731	.	A	.	.	LowGQX	END=44044732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	44044733	.	C	.	.	PASS	END=44044735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	44044736	.	C	.	.	LowGQX	END=44044738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	44044739	.	C	.	.	PASS	END=44044740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	44044741	.	A	.	.	LowGQX	END=44044742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	44044743	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	44044744	.	G	.	.	LowGQX	END=44044753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	44044754	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	44044755	.	G	.	.	LowGQX	END=44044759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	44044760	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:60
chr1	44044761	.	T	.	.	LowGQX	END=44044762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	44044763	.	C	.	.	LowGQX	END=44044765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	44044766	.	G	.	.	LowGQX	END=44044768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	44044769	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	44044770	.	C	.	.	LowGQX	END=44044783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	44044784	.	C	.	.	LowGQX	END=44044791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	44044792	.	C	.	.	LowGQX	END=44044804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	44044805	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	44044806	.	G	.	.	LowGQX	END=44044808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	44044809	.	G	.	.	LowGQX	END=44044810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	44044811	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	44044812	.	G	.	.	LowGQX	END=44044820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	44044821	.	C	.	.	LowGQX	END=44044825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	44044826	.	G	.	.	LowGQX	END=44044830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	44044831	.	T	.	.	LowGQX	END=44044837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	44044838	.	C	.	.	LowGQX	END=44044840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	44044841	.	T	.	.	LowGQX	END=44044844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	44044845	.	A	.	.	LowGQX	END=44044846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	44044847	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	44044848	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	44044849	.	C	.	.	LowGQX	END=44044852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	44044853	.	C	.	42.02	LowGQX	DP=6;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:6:12.03:60:12
chr1	44044854	.	C	.	.	LowGQX	END=44044862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	44044863	.	C	.	.	LowGQX	END=44044864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	44044865	.	G	.	.	LowGQX	END=44044868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	44044869	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	44044870	.	C	.	.	LowGQX	END=44044872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	44044873	.	A	.	.	LowGQX	END=44044876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	44044877	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	44044878	.	A	.	.	LowGQX	END=44044881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	44044882	.	T	.	.	LowGQX	END=44044885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	44044886	.	G	.	.	LowGQX	END=44044887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	44044888	.	C	.	.	LowGQX	END=44044889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	44044890	.	T	.	.	LowGQX	END=44044893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	44044894	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	44044895	.	T	.	.	LowGQX	END=44044903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	44044904	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	44044905	.	T	.	.	LowGQX	END=44044910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	44044911	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	44044912	.	T	.	.	LowGQX	END=44044913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	44044914	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	44044915	.	G	.	.	LowGQX	END=44044921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	44044922	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	44044923	.	G	.	.	LowGQX	END=44044925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	44044926	.	T	.	.	LowGQX	END=44044928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	44044929	.	A	.	.	LowGQX	END=44044939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	44044940	.	C	.	.	LowGQX	END=44044956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	44054395	.	C	.	.	PASS	END=44054446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	44054447	.	A	.	.	PASS	END=44054537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:262:99:60
chr1	44054538	.	C	.	.	PASS	END=44054638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:266:99:60
chr1	44054639	.	T	.	.	PASS	END=44054661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	44054662	.	A	.	.	PASS	END=44054673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	44056641	.	A	.	.	PASS	END=44056667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:253:99:60
chr1	44056668	.	T	.	.	PASS	END=44056848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:286:99:60
chr1	44056849	.	G	.	.	PASS	END=44056911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	44056912	.	C	.	.	PASS	END=44057029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	44057030	.	G	.	.	PASS	END=44057194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	44057195	.	C	.	.	PASS	END=44057226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	44057481	.	A	.	.	PASS	END=44057584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	44057585	.	T	.	.	PASS	END=44057597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	44057598	.	G	.	.	PASS	END=44057621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	44058126	.	A	.	.	PASS	END=44058179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	44058180	.	C	.	.	PASS	END=44058227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	44058228	.	T	.	.	PASS	END=44058261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	44058262	.	A	.	.	PASS	END=44058264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	44058265	.	C	A	1097.61	PASS	BaseQRankSum=-0.185;DP=69;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.6281;MQ=60;MQ0=0;MQRankSum=-0.808;QD=15.91;ReadPosRankSum=-1.470;SB=-383.67	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:23,46:69:99:1128,0,524:60:99:0.667
chr1	44058266	.	C	.	.	PASS	END=44058274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	44063417	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:35:15:60
chr1	44063418	.	G	.	.	PASS	END=44063420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	44063421	.	C	.	.	PASS	END=44063429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	44063430	.	C	.	.	PASS	END=44063434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	44063435	.	C	.	.	PASS	END=44063446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	44063447	.	G	.	.	PASS	END=44063452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	44063453	.	G	.	.	PASS	END=44063464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	44063465	.	C	.	.	PASS	END=44063499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	44063500	.	C	.	.	PASS	END=44063528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	44063529	.	T	.	.	PASS	END=44063576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:262:99:60
chr1	44063577	.	G	.	.	PASS	END=44063638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:279:99:60
chr1	44063639	.	G	.	.	PASS	END=44063678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	44063679	.	C	.	.	PASS	END=44063706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	44063707	.	T	.	.	PASS	END=44063723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	44063724	.	G	.	.	PASS	END=44063726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	44064389	.	A	.	.	PASS	END=44064408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	44064409	.	G	.	.	PASS	END=44064433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	44064434	.	C	.	.	PASS	END=44064482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	44064483	.	C	.	.	PASS	END=44064556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr1	44064557	.	C	.	.	PASS	END=44064586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	44067706	.	A	.	.	PASS	END=44067738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	44067739	.	C	.	.	PASS	END=44067805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	44069085	.	A	.	.	PASS	END=44069206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	44069280	.	A	.	.	PASS	END=44069325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	44069326	.	A	.	.	PASS	END=44069384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	44069385	.	G	.	.	PASS	END=44069396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	44069397	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:54:60
chr1	44069398	.	C	.	.	PASS	END=44069410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	44069411	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:60:60
chr1	44069412	.	G	.	.	PASS	END=44069448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	44069449	.	C	.	.	PASS	END=44069455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	44069456	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:57:60
chr1	44069457	.	A	.	.	PASS	END=44069480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	44069481	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:45:60
chr1	44069482	.	A	.	.	PASS	END=44069489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	44069490	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:57:60
chr1	44069491	.	T	.	.	PASS	END=44069532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	44069533	.	T	.	.	PASS	END=44069536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr1	44069537	.	A	.	.	PASS	END=44069544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	44069545	.	A	.	.	PASS	END=44069546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:57:60
chr1	44069547	.	C	.	.	PASS	END=44069563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	44069564	.	T	.	.	PASS	END=44069592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	44069593	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:54:60
chr1	44069594	.	T	.	.	PASS	END=44069611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	44069612	.	C	.	.	PASS	END=44069635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	44069636	.	C	.	.	PASS	END=44069665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	44069666	.	T	.	.	PASS	END=44069671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	44069672	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:57:60
chr1	44069673	.	C	.	.	PASS	END=44069692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	44069693	.	A	.	.	PASS	END=44069702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:69:60
chr1	44069703	.	C	.	.	PASS	END=44069706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	44069707	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:59:60
chr1	44069708	.	A	.	.	PASS	END=44069721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:72:60
chr1	44069722	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:50:60
chr1	44069723	.	T	.	.	PASS	END=44069733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:75:60
chr1	44069734	.	A	.	.	PASS	END=44069739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:69:60
chr1	44069740	.	T	.	.	PASS	END=44069767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	44069768	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:52:60
chr1	44069769	.	C	.	.	PASS	END=44069818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	44069819	.	T	.	.	PASS	END=44069843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	44069844	.	C	.	.	PASS	END=44069862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	44070572	.	A	.	.	PASS	END=44070612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	44070613	.	C	.	.	PASS	END=44070673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	44070859	.	A	.	.	PASS	END=44070879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	44070880	.	G	.	.	PASS	END=44071116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	44071197	.	C	.	.	PASS	END=44071220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	44071221	.	G	A	5897.20	PASS	DP=216;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=16.2003;MQ=60;MQ0=0;QD=27.30;SB=-2536.65	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,215:216:99:5897,448,0:60:99:1.000
chr1	44071222	.	C	.	.	PASS	END=44071271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	44071272	.	C	.	.	PASS	END=44071296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	44071909	.	A	.	.	PASS	END=44071930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	44071931	.	A	.	.	PASS	END=44071971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	44071972	.	G	.	.	PASS	END=44072017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	44072018	.	C	T	1158.65	PASS	BaseQRankSum=0.326;DP=116;Dels=0.00;FS=0.770;HRun=3;HaplotypeScore=20.8322;MQ=60;MQ0=0;MQRankSum=-0.878;QD=9.99;ReadPosRankSum=1.077;SB=-615.98	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:59,57:116:99:1189,0,1310:60:99:0.491
chr1	44072019	.	T	.	.	PASS	END=44072065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	44072066	.	C	T	1325.72	PASS	BaseQRankSum=0.422;DP=115;Dels=0.00;FS=1.601;HRun=0;HaplotypeScore=12.3099;MQ=60;MQ0=0;MQRankSum=0.428;QD=11.53;ReadPosRankSum=0.053;SB=-722.19	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:58,57:115:99:1356,0,1479:60:99:0.496
chr1	44072067	.	C	.	.	PASS	END=44072131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	44072483	.	A	.	.	PASS	END=44072501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	44072502	.	C	.	.	PASS	END=44072598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	44072599	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:57:60
chr1	44072600	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:99:60
chr1	44072601	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:66:60
chr1	44072602	.	A	.	.	PASS	END=44072606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	44072607	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:61:60
chr1	44072608	.	C	.	.	PASS	END=44072615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	44072616	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:65:60
chr1	44072617	.	A	.	.	PASS	END=44072632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	44072633	.	T	.	.	PASS	END=44072640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	44072641	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:63:60
chr1	44075052	.	A	.	.	PASS	END=44075074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	44075075	.	C	.	.	PASS	END=44075153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	44075154	.	A	.	.	PASS	END=44075171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	44078405	.	T	.	.	LowGQX	END=44078449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44078450	.	C	.	.	LowGQX	.	GT	./.
chr1	44078451	.	C	.	.	LowGQX	END=44078464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44078465	.	A	.	.	LowGQX	.	GT	./.
chr1	44078466	.	C	.	.	LowGQX	END=44078482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44078483	.	A	.	.	LowGQX	.	GT	./.
chr1	44078484	.	A	.	.	LowGQX	END=44078487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44078488	.	C	.	.	LowGQX	END=44078504	GT	./.
chr1	44079287	.	A	.	.	PASS	END=44079314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	44079315	.	A	.	.	PASS	END=44079388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	44083114	.	A	.	.	PASS	END=44083241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	44083405	.	A	.	.	PASS	END=44083434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	44083435	.	C	.	.	PASS	END=44083506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:252:99:60
chr1	44083507	.	T	C	6988.80	PASS	BaseQRankSum=-1.146;DP=273;Dels=0.00;FS=3.482;HRun=0;HaplotypeScore=18.1292;MQ=60;MQ0=0;MQRankSum=0.404;QD=25.60;ReadPosRankSum=0.143;SB=-4078.67	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,265:273:99:6989,490,0:60:99:0.996
chr1	44083508	.	G	.	.	PASS	END=44083518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:60
chr1	44083519	.	G	A	7574.54	PASS	BaseQRankSum=-1.014;DP=270;Dels=0.00;FS=3.954;HRun=1;HaplotypeScore=10.4689;MQ=60;MQ0=0;MQRankSum=-1.219;QD=28.05;ReadPosRankSum=-0.706;SB=-3871.46	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,269:270:99:7575,527,0:60:99:0.996
chr1	44083520	.	A	.	.	PASS	END=44083561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	44083562	.	C	.	.	PASS	END=44083584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	44084299	.	A	.	.	PASS	END=44084350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	44084351	.	T	.	.	PASS	END=44084420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	44084421	.	G	.	.	PASS	END=44084422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:287:99:60
chr1	44084717	.	A	.	.	PASS	END=44084738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	44084739	.	C	T	1624.00	PASS	BaseQRankSum=0.602;DP=153;Dels=0.00;FS=5.152;HRun=0;HaplotypeScore=20.9699;MQ=60;MQ0=0;MQRankSum=-0.184;QD=10.61;ReadPosRankSum=-0.730;SB=-841.21	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:71,79:153:99:1654,0,1856:60:99:0.527
chr1	44084740	.	G	.	.	PASS	END=44084848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	44084849	.	C	.	.	PASS	END=44084875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	44084957	.	A	.	.	PASS	END=44085047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	44085048	.	A	.	.	PASS	END=44085112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	44085113	.	C	.	.	PASS	END=44085144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	44085145	.	C	.	.	PASS	END=44085246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	44085349	.	A	.	.	PASS	END=44085373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	44085374	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:49:60
chr1	44085375	.	A	.	.	PASS	END=44085386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	44085387	.	A	.	.	PASS	END=44085388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	44085389	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:69:60
chr1	44085390	.	A	.	.	PASS	END=44085403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:86:60
chr1	44085404	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:70:60
chr1	44085405	.	T	.	.	PASS	END=44085442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	44085443	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:75:60
chr1	44085444	.	T	.	.	PASS	END=44085531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	44085764	.	A	.	.	PASS	END=44085894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	44086123	.	A	.	.	PASS	END=44086252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	44086507	.	A	.	.	PASS	END=44086551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	44086552	.	G	.	.	PASS	END=44086636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	44086637	.	G	.	.	PASS	END=44086658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	44086659	.	T	.	.	PASS	END=44086665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	44086766	.	A	.	.	PASS	END=44086830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:245:99:60
chr1	44086831	.	C	T	2745.76	PASS	BaseQRankSum=0.309;DP=272;Dels=0.00;FS=2.756;HRun=0;HaplotypeScore=20.3595;MQ=60;MQ0=0;MQRankSum=-0.048;QD=10.09;ReadPosRankSum=-1.311;SB=-1735.08	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:145,125:272:99:2776,0,3731:60:99:0.463
chr1	44086832	.	G	.	.	PASS	END=44086905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	44087591	.	C	.	.	PASS	END=44087632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	44087633	.	G	.	.	PASS	END=44087690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	44118845	.	A	.	.	LowGQX	END=44118986	GT	./.
chr1	44121260	.	A	.	.	LowGQX	END=44121439	GT	./.
chr1	44125967	.	A	.	.	LowGQX	END=44126085	GT	./.
chr1	44128563	.	A	.	.	LowGQX	END=44128600	GT	./.
chr1	44128601	.	A	.	.	LowGQX	END=44128760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44131342	.	C	.	.	LowGQX	END=44131436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44131437	.	G	.	.	LowGQX	END=44131441	GT	./.
chr1	44132121	.	A	.	.	LowGQX	END=44132228	GT	./.
chr1	44132623	.	A	.	.	LowGQX	END=44132764	GT	./.
chr1	44133441	.	A	.	.	LowGQX	END=44133692	GT	./.
chr1	44134769	.	A	.	.	LowGQX	END=44134972	GT	./.
chr1	44137174	.	A	.	.	LowGQX	END=44137441	GT	./.
chr1	44137442	.	G	.	.	LowGQX	END=44137482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44137483	.	A	.	.	LowGQX	.	GT	./.
chr1	44137484	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44137485	.	A	.	.	LowGQX	.	GT	./.
chr1	44137486	.	G	.	.	LowGQX	END=44137495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44137496	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	44137497	.	G	.	.	LowGQX	END=44137503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44137504	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	44137505	.	G	.	.	LowGQX	END=44137514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44137515	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	44137516	.	T	.	.	LowGQX	END=44137519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44137520	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	44137521	.	G	.	.	LowGQX	END=44137525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44137526	.	A	.	.	LowGQX	.	GT	./.
chr1	44137527	.	G	.	.	LowGQX	END=44137529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44137530	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	44137531	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44137532	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	44137533	.	G	.	.	LowGQX	END=44137535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44137536	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	44137537	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44137538	.	C	.	.	LowGQX	.	GT	./.
chr1	44137539	.	T	.	.	LowGQX	END=44137548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44149353	.	A	.	.	LowGQX	END=44149375	GT	./.
chr1	44149376	.	T	.	.	LowGQX	END=44149381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44149382	.	G	.	.	LowGQX	.	GT	./.
chr1	44149383	.	A	.	.	LowGQX	END=44149384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44149385	.	G	.	.	LowGQX	.	GT	./.
chr1	44149386	.	A	.	.	LowGQX	END=44149394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44149395	.	A	.	.	LowGQX	END=44149396	GT	./.
chr1	44149397	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44149398	.	C	.	.	LowGQX	.	GT	./.
chr1	44149399	.	C	.	.	LowGQX	END=44149403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44149404	.	G	.	.	LowGQX	.	GT	./.
chr1	44149405	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44149406	.	C	.	.	LowGQX	.	GT	./.
chr1	44149407	.	G	.	.	LowGQX	END=44149409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44149410	.	G	.	.	LowGQX	.	GT	./.
chr1	44149411	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44149412	.	C	.	.	LowGQX	.	GT	./.
chr1	44149413	.	A	.	.	LowGQX	END=44149416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44149417	.	T	.	.	LowGQX	.	GT	./.
chr1	44149418	.	T	.	.	LowGQX	END=44149421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44149422	.	G	.	.	LowGQX	.	GT	./.
chr1	44149423	.	C	.	.	LowGQX	END=44149441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44149442	.	C	.	.	LowGQX	.	GT	./.
chr1	44149443	.	C	.	.	LowGQX	END=44149448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44149449	.	T	.	.	LowGQX	.	GT	./.
chr1	44149450	.	G	.	.	LowGQX	END=44149461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44149462	.	T	.	.	LowGQX	.	GT	./.
chr1	44149463	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44149464	.	T	.	.	LowGQX	.	GT	./.
chr1	44149465	.	C	.	.	LowGQX	END=44149477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44154583	.	A	.	.	LowGQX	END=44154768	GT	./.
chr1	44156514	.	A	.	.	LowGQX	END=44156722	GT	./.
chr1	44157156	.	G	.	.	LowGQX	END=44157255	GT	./.
chr1	44157845	.	C	.	.	LowGQX	END=44158004	GT	./.
chr1	44159663	.	A	.	.	LowGQX	END=44159775	GT	./.
chr1	44160378	.	A	.	.	LowGQX	END=44160387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44160388	.	C	.	.	LowGQX	.	GT	./.
chr1	44160389	.	T	.	.	LowGQX	END=44160390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44160391	.	C	.	.	LowGQX	.	GT	./.
chr1	44160392	.	T	.	.	LowGQX	END=44160403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44160404	.	A	.	.	LowGQX	.	GT	./.
chr1	44160405	.	G	.	.	LowGQX	END=44160431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44160432	.	A	.	.	LowGQX	END=44160567	GT	./.
chr1	44163512	.	A	.	.	LowGQX	END=44163519	GT	./.
chr1	44163520	.	A	.	.	LowGQX	END=44163521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163522	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	44163523	.	G	.	.	LowGQX	.	GT	./.
chr1	44163524	.	G	.	.	LowGQX	END=44163530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163531	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	44163532	.	C	.	.	LowGQX	END=44163533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163534	.	A	.	.	LowGQX	END=44163539	GT	./.
chr1	44163540	.	C	.	.	LowGQX	END=44163542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163543	.	T	.	.	LowGQX	.	GT	./.
chr1	44163544	.	G	.	.	LowGQX	END=44163545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163546	.	A	.	.	LowGQX	END=44163548	GT	./.
chr1	44163549	.	C	.	.	LowGQX	END=44163550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163551	.	A	.	.	LowGQX	END=44163552	GT	./.
chr1	44163553	.	A	.	.	LowGQX	END=44163554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163555	.	A	.	.	LowGQX	END=44163558	GT	./.
chr1	44163559	.	A	.	.	LowGQX	END=44163561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163562	.	A	.	.	LowGQX	END=44163566	GT	./.
chr1	44163567	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163568	.	C	.	.	LowGQX	.	GT	./.
chr1	44163569	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163570	.	T	.	.	LowGQX	.	GT	./.
chr1	44163571	.	A	.	.	LowGQX	END=44163573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163574	.	A	.	.	LowGQX	END=44163575	GT	./.
chr1	44163576	.	C	.	.	LowGQX	END=44163577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163578	.	G	.	.	LowGQX	END=44163580	GT	./.
chr1	44163581	.	G	.	.	LowGQX	END=44163582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163583	.	T	.	.	LowGQX	END=44163584	GT	./.
chr1	44163585	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163586	.	T	.	.	LowGQX	.	GT	./.
chr1	44163587	.	A	.	.	LowGQX	END=44163588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163589	.	C	.	.	LowGQX	END=44163592	GT	./.
chr1	44163593	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163594	.	T	.	.	LowGQX	END=44163598	GT	./.
chr1	44163599	.	T	.	.	LowGQX	END=44163603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163604	.	A	.	.	LowGQX	.	GT	./.
chr1	44163605	.	G	.	.	LowGQX	END=44163607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163608	.	T	.	.	LowGQX	.	GT	./.
chr1	44163609	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163610	.	A	.	.	LowGQX	.	GT	./.
chr1	44163611	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163612	.	C	.	.	LowGQX	END=44163613	GT	./.
chr1	44163614	.	C	.	.	LowGQX	END=44163618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163619	.	A	.	.	LowGQX	.	GT	./.
chr1	44163620	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163621	.	C	.	.	LowGQX	.	GT	./.
chr1	44163622	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163623	.	T	.	.	LowGQX	.	GT	./.
chr1	44163624	.	C	.	.	LowGQX	END=44163627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163628	.	G	.	.	LowGQX	END=44163629	GT	./.
chr1	44163630	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163631	.	G	.	.	LowGQX	.	GT	./.
chr1	44163632	.	T	.	.	LowGQX	END=44163633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163634	.	A	.	.	LowGQX	.	GT	./.
chr1	44163635	.	A	.	.	LowGQX	END=44163636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163637	.	T	.	.	LowGQX	END=44163640	GT	./.
chr1	44163641	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163642	.	T	.	.	LowGQX	.	GT	./.
chr1	44163643	.	G	.	.	LowGQX	END=44163644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163645	.	T	.	.	LowGQX	END=44163646	GT	./.
chr1	44163647	.	G	.	.	LowGQX	END=44163648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163649	.	T	.	.	LowGQX	END=44163653	GT	./.
chr1	44163654	.	C	.	.	LowGQX	END=44163658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163659	.	A	.	.	LowGQX	.	GT	./.
chr1	44163660	.	C	.	.	LowGQX	END=44163661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163662	.	A	.	.	LowGQX	.	GT	./.
chr1	44163663	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163664	.	C	.	.	LowGQX	END=44163665	GT	./.
chr1	44163666	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163667	.	T	.	.	LowGQX	.	GT	./.
chr1	44163668	.	A	.	.	LowGQX	END=44163669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44163670	.	C	.	.	LowGQX	END=44163686	GT	./.
chr1	44169286	.	A	.	.	LowGQX	END=44169409	GT	./.
chr1	44169688	.	T	.	.	LowGQX	END=44169787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44169899	.	A	.	.	LowGQX	END=44170043	GT	./.
chr1	44201883	.	A	.	.	PASS	END=44201911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:60
chr1	44201912	.	G	.	.	PASS	END=44201924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	44201925	.	C	.	.	PASS	END=44202055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	44202056	.	G	.	.	PASS	END=44202064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	44202065	.	C	.	.	PASS	END=44202083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	44202084	.	A	.	.	PASS	END=44202108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	44202109	.	T	.	.	PASS	END=44202133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr1	44202134	.	T	.	.	PASS	END=44202144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	44202145	.	G	.	.	PASS	END=44202147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	44257717	.	C	.	.	PASS	END=44257817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	44257818	.	C	.	.	PASS	END=44257844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	44257845	.	T	.	.	PASS	END=44257871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	44266948	.	G	.	.	LowGQX	END=44267047	GT	./.
chr1	44280504	.	A	.	.	PASS	END=44280533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	44280534	.	C	.	.	PASS	END=44280634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	44280635	.	T	.	.	PASS	END=44280655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	44280656	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:99:60
chr1	44290352	.	C	.	.	PASS	END=44290383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	44290384	.	C	.	.	PASS	END=44290385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	44290386	.	A	.	.	PASS	END=44290390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	44290391	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:6:60
chr1	44290392	.	C	.	.	PASS	END=44290398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	44290399	.	G	.	.	PASS	END=44290402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	44290403	.	C	.	.	PASS	END=44290413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	44290414	.	C	.	.	PASS	END=44290427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	44290428	.	G	.	.	PASS	END=44290488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	44290489	.	C	.	.	PASS	END=44290529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	44290530	.	A	G	891.75	PASS	BaseQRankSum=-0.314;DP=59;Dels=0.00;FS=3.910;HRun=0;HaplotypeScore=5.7240;MQ=60;MQ0=0;MQRankSum=-0.514;QD=15.11;ReadPosRankSum=1.388;SB=-453.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:25,34:59:99:922,0,493:60:99:0.576
chr1	44290531	.	C	.	.	PASS	END=44290567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	44290568	.	A	.	.	PASS	END=44290579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	44290580	.	A	.	.	PASS	END=44290605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	44303840	.	C	.	.	PASS	END=44303850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	44303851	.	C	.	.	PASS	END=44303865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	44303866	.	T	.	.	PASS	END=44303883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	44303884	.	C	.	.	PASS	END=44303991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	44303992	.	T	.	.	PASS	END=44304016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	44304017	.	A	.	.	PASS	END=44304034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	44323788	.	C	.	.	LowGQX	END=44323887	GT	./.
chr1	44344657	.	G	.	.	LowGQX	END=44344756	GT	./.
chr1	44344979	.	C	.	.	LowGQX	END=44345078	GT	./.
chr1	44360004	.	A	.	.	PASS	END=44360007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	44360008	.	C	.	.	PASS	END=44360009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:76:60
chr1	44360010	.	G	.	.	PASS	END=44360055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	44360056	.	T	.	.	PASS	END=44360111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	44360112	.	C	.	.	PASS	END=44360145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	44360146	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:54:60
chr1	44360147	.	A	.	.	PASS	END=44360174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	44360175	.	T	.	.	PASS	END=44360187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	44360188	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:27:60
chr1	44360189	.	C	.	.	PASS	END=44360200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	44363849	.	A	.	.	PASS	END=44363951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	44363952	.	T	.	.	PASS	END=44363981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	44363982	.	A	.	.	PASS	END=44363983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	44363984	.	T	.	.	PASS	END=44363999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	44364000	.	C	.	.	PASS	END=44364012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	44364013	.	T	.	.	PASS	END=44364021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	44364789	.	A	.	.	PASS	END=44364790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	44364791	.	A	.	.	PASS	END=44364795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:59:60
chr1	44364796	.	G	.	.	PASS	END=44364804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	44364805	.	T	.	.	PASS	END=44364807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	44364808	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:58:60
chr1	44364809	.	T	.	.	PASS	END=44364823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr1	44364824	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:72:60
chr1	44364825	.	C	.	.	PASS	END=44364843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:78:60
chr1	44364844	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:60:60
chr1	44364845	.	G	.	.	PASS	END=44364861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	44364862	.	A	.	.	PASS	END=44364955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	44364956	.	C	.	.	PASS	END=44364983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	44364984	.	T	.	.	PASS	END=44364987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:87:60
chr1	44365136	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:51:60
chr1	44365137	.	C	.	.	PASS	END=44365151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	44365152	.	C	.	.	PASS	END=44365165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	44365166	.	C	.	.	PASS	END=44365168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	44365169	.	T	.	.	PASS	END=44365185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	44365186	.	G	.	.	PASS	END=44365191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	44365192	.	G	.	.	PASS	END=44365206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	44365207	.	C	.	.	PASS	END=44365257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	44365258	.	C	.	.	PASS	END=44365276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	44365277	.	A	.	.	PASS	END=44365309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	44365310	.	C	.	.	PASS	END=44365391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	44365392	.	A	.	.	PASS	END=44365427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	44365428	.	C	.	.	PASS	END=44365450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	44386025	.	C	.	.	PASS	END=44386040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	44386041	.	T	.	.	PASS	END=44386067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	44386068	.	G	.	.	PASS	END=44386117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	44386118	.	C	.	.	PASS	END=44386166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	44386167	.	A	.	.	PASS	END=44386187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	44386188	.	G	.	.	PASS	END=44386203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	44386204	.	T	.	.	PASS	END=44386218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:79:59
chr1	44386219	.	G	.	.	PASS	END=44386245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:59
chr1	44386246	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:72:59
chr1	44386247	.	G	.	.	PASS	END=44386252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:59
chr1	44386253	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:75:59
chr1	44386254	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:99:59
chr1	44386255	.	G	.	.	PASS	END=44386256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:59
chr1	44386257	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:99:59
chr1	44386258	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:59
chr1	44386259	.	G	.	.	PASS	END=44386260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:59
chr1	44386261	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:63:59
chr1	44386262	.	G	.	.	PASS	END=44386264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:59
chr1	44386265	.	T	.	72.11	PASS	DP=36;MQ=59;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:28:36:42.11:59:42
chr1	44386266	.	C	.	.	PASS	END=44386268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:59
chr1	44386269	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:87:60
chr1	44386270	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:54:60
chr1	44386271	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:84:60
chr1	44386272	.	T	.	.	PASS	END=44386273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:51:60
chr1	44386403	.	C	.	.	PASS	END=44386427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	44386428	.	C	.	.	PASS	END=44386489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	44386490	.	G	.	.	PASS	END=44386573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	44386574	.	A	.	.	PASS	END=44386598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	44386599	.	A	.	.	PASS	END=44386614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	44386615	.	A	G	2078.58	PASS	DP=69;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=19.8853;MQ=60;MQ0=0;QD=30.12;SB=-982.17	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,69:69:99:2112,166,0:60:99:1.000
chr1	44386616	.	T	.	.	PASS	END=44386632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	44386633	.	T	.	.	PASS	END=44386641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:93:60
chr1	44386642	.	G	C	500.49	PASS	BaseQRankSum=-1.956;DP=66;Dels=0.00;FS=1.095;HRun=0;HaplotypeScore=19.9885;MQ=60;MQ0=0;MQRankSum=-1.252;QD=7.58;ReadPosRankSum=2.504;SB=-268.80	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:39,27:66:99:530,0,959:60:99:0.409
chr1	44386643	.	G	.	.	PASS	END=44386651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	44395691	.	G	.	.	PASS	END=44395707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	44395708	.	G	.	.	PASS	END=44395732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	44395733	.	G	.	.	PASS	END=44395754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	44395755	.	G	.	.	PASS	END=44395785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	44395786	.	C	T	1696.68	PASS	BaseQRankSum=0.203;DP=149;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=10.4161;MQ=60;MQ0=0;MQRankSum=-1.312;QD=11.39;ReadPosRankSum=0.502;SB=-937.26	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:75,73:149:99:1727,0,1790:60:99:0.493
chr1	44395787	.	T	.	.	PASS	END=44395881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	44395882	.	A	.	.	PASS	END=44395909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	44395910	.	G	.	.	PASS	END=44395936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	44395937	.	G	.	.	PASS	END=44395944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	44401257	.	G	.	.	LowGQX	END=44401302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44401303	.	G	.	.	LowGQX	END=44401408	GT	./.
chr1	44401653	.	C	.	.	LowGQX	END=44401911	GT	./.
chr1	44401961	.	G	.	.	LowGQX	END=44402439	GT	./.
chr1	44413205	.	G	.	.	LowGQX	END=44413364	GT	./.
chr1	44415087	.	A	.	.	LowGQX	END=44415619	GT	./.
chr1	44415620	.	G	.	.	LowGQX	END=44415729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44415730	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	44415731	.	A	.	.	LowGQX	END=44415778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44415779	.	A	.	.	LowGQX	END=44415827	GT	./.
chr1	44421990	.	A	.	.	LowGQX	END=44422134	GT	./.
chr1	44422230	.	A	.	.	LowGQX	END=44422375	GT	./.
chr1	44422480	.	A	.	.	LowGQX	END=44422650	GT	./.
chr1	44422865	.	A	.	.	LowGQX	END=44422989	GT	./.
chr1	44423072	.	A	.	.	LowGQX	END=44423205	GT	./.
chr1	44423206	.	G	.	.	LowGQX	END=44423212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423213	.	T	.	.	LowGQX	END=44423214	GT	./.
chr1	44423215	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423216	.	C	.	.	LowGQX	.	GT	./.
chr1	44423217	.	C	.	.	LowGQX	END=44423221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423222	.	G	.	.	LowGQX	.	GT	./.
chr1	44423223	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423647	.	A	.	.	LowGQX	END=44423661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423662	.	A	.	.	LowGQX	.	GT	./.
chr1	44423663	.	T	.	.	LowGQX	END=44423737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423738	.	T	.	.	LowGQX	.	GT	./.
chr1	44423739	.	C	.	.	LowGQX	END=44423740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423741	.	G	.	.	LowGQX	END=44423742	GT	./.
chr1	44423743	.	C	.	.	LowGQX	END=44423746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423747	.	T	.	.	LowGQX	.	GT	./.
chr1	44423748	.	C	.	.	LowGQX	END=44423751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423752	.	G	.	.	LowGQX	END=44423753	GT	./.
chr1	44423754	.	C	.	.	LowGQX	END=44423765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423766	.	A	.	.	LowGQX	END=44423767	GT	./.
chr1	44423768	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423769	.	T	.	.	LowGQX	.	GT	./.
chr1	44423770	.	C	.	.	LowGQX	END=44423777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423778	.	A	.	.	LowGQX	.	GT	./.
chr1	44423779	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423780	.	T	.	.	LowGQX	END=44423781	GT	./.
chr1	44423782	.	C	.	.	LowGQX	END=44423785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423786	.	T	.	.	LowGQX	END=44423787	GT	./.
chr1	44423788	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423789	.	G	.	.	LowGQX	.	GT	./.
chr1	44423790	.	A	.	.	LowGQX	END=44423793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423794	.	G	.	.	LowGQX	.	GT	./.
chr1	44423795	.	C	.	.	LowGQX	END=44423806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423807	.	G	.	.	LowGQX	.	GT	./.
chr1	44423808	.	C	.	.	LowGQX	END=44423829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423830	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	44423831	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423832	.	T	.	.	LowGQX	.	GT	./.
chr1	44423878	.	C	.	.	LowGQX	END=44423880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44423881	.	T	.	.	LowGQX	END=44423977	GT	./.
chr1	44424131	.	A	.	.	LowGQX	END=44424269	GT	./.
chr1	44424416	.	A	.	.	LowGQX	END=44424563	GT	./.
chr1	44425912	.	T	.	.	LowGQX	END=44426011	GT	./.
chr1	44426546	.	A	.	.	LowGQX	.	GT	./.
chr1	44426547	.	G	.	.	LowGQX	END=44426553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44426554	.	T	.	.	LowGQX	.	GT	./.
chr1	44426555	.	G	.	.	LowGQX	END=44426560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44426561	.	T	.	.	LowGQX	.	GT	./.
chr1	44426562	.	C	.	.	LowGQX	END=44426575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44426576	.	T	.	.	LowGQX	.	GT	./.
chr1	44426577	.	T	.	.	LowGQX	END=44426687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44426836	.	A	.	.	LowGQX	END=44426936	GT	./.
chr1	44429918	.	G	.	.	LowGQX	END=44429960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44429961	.	A	.	.	LowGQX	.	GT	./.
chr1	44429962	.	T	.	.	LowGQX	END=44429979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44429980	.	A	.	.	LowGQX	END=44430017	GT	./.
chr1	44432195	.	G	.	.	LowGQX	END=44432315	GT	./.
chr1	44432376	.	T	.	.	LowGQX	END=44432475	GT	./.
chr1	44432597	.	T	.	.	LowGQX	END=44432603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44432604	.	A	.	.	LowGQX	.	GT	./.
chr1	44432605	.	G	.	.	LowGQX	END=44432609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44432610	.	G	.	.	LowGQX	.	GT	./.
chr1	44432611	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44432612	.	T	.	.	LowGQX	.	GT	./.
chr1	44432613	.	G	.	.	LowGQX	END=44432614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44432615	.	C	.	.	LowGQX	END=44432616	GT	./.
chr1	44432617	.	C	.	.	LowGQX	END=44432619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44432620	.	T	.	.	LowGQX	.	GT	./.
chr1	44432621	.	G	.	.	LowGQX	END=44432626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44432627	.	A	.	.	LowGQX	.	GT	./.
chr1	44432628	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44432629	.	G	.	.	LowGQX	END=44432630	GT	./.
chr1	44432631	.	A	.	.	LowGQX	END=44432635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44432636	.	C	.	.	LowGQX	END=44432696	GT	./.
chr1	44432985	.	A	.	.	LowGQX	END=44433022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44433023	.	T	.	.	LowGQX	END=44433170	GT	./.
chr1	44433256	.	A	.	.	LowGQX	END=44433311	GT	./.
chr1	44433312	.	G	.	.	LowGQX	END=44433356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44435846	.	T	.	.	LowGQX	END=44435996	GT	./.
chr1	44436266	.	A	.	.	LowGQX	END=44436478	GT	./.
chr1	44436548	.	A	.	.	LowGQX	END=44436863	GT	./.
chr1	44437057	.	A	.	.	LowGQX	END=44437744	GT	./.
chr1	44437828	.	A	.	.	LowGQX	END=44438008	GT	./.
chr1	44438085	.	A	.	.	LowGQX	END=44438213	GT	./.
chr1	44440700	.	C	.	.	LowGQX	END=44440979	GT	./.
chr1	44441323	.	A	.	.	LowGQX	END=44441422	GT	./.
chr1	44441447	.	C	.	.	LowGQX	END=44441546	GT	./.
chr1	44441754	.	C	.	.	LowGQX	END=44441853	GT	./.
chr1	44441963	.	C	.	.	LowGQX	END=44442062	GT	./.
chr1	44442247	.	C	.	.	LowGQX	END=44442346	GT	./.
chr1	44442421	.	T	.	.	LowGQX	END=44442520	GT	./.
chr1	44442696	.	A	.	.	LowGQX	END=44442778	GT	./.
chr1	44442779	.	G	.	.	LowGQX	END=44442966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44442967	.	T	.	.	LowGQX	END=44443083	GT	./.
chr1	44443617	.	T	.	.	LowGQX	END=44443646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44443647	.	T	.	.	LowGQX	END=44443711	GT	./.
chr1	44443712	.	T	.	.	LowGQX	END=44443716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44445591	.	G	.	.	LowGQX	END=44445750	GT	./.
chr1	44446780	.	G	.	.	LowGQX	END=44447121	GT	./.
chr1	44447122	.	G	.	.	LowGQX	END=44447147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44447359	.	A	.	.	LowGQX	END=44447598	GT	./.
chr1	44450535	.	A	.	.	LowGQX	END=44450568	GT	./.
chr1	44450569	.	G	.	.	LowGQX	END=44450571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44450572	.	T	.	.	LowGQX	.	GT	./.
chr1	44450573	.	A	.	.	LowGQX	END=44450577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44450578	.	G	.	.	LowGQX	.	GT	./.
chr1	44450579	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44450580	.	G	.	.	LowGQX	.	GT	./.
chr1	44450581	.	C	.	.	LowGQX	END=44450591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44450592	.	C	.	.	LowGQX	.	GT	./.
chr1	44450593	.	G	.	.	LowGQX	END=44450613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44450614	.	T	.	.	LowGQX	.	GT	./.
chr1	44450615	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44450616	.	A	.	.	LowGQX	.	GT	./.
chr1	44450617	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44450618	.	T	.	.	LowGQX	END=44450619	GT	./.
chr1	44450620	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44450621	.	T	.	.	LowGQX	.	GT	./.
chr1	44450622	.	T	.	.	LowGQX	END=44450641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44450642	.	C	.	.	LowGQX	.	GT	./.
chr1	44450643	.	T	.	.	LowGQX	END=44450644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44450645	.	G	.	.	LowGQX	.	GT	./.
chr1	44450646	.	T	.	.	LowGQX	END=44450650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44450651	.	A	.	.	LowGQX	.	GT	./.
chr1	44450652	.	T	.	.	LowGQX	END=44450655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44450656	.	T	.	.	LowGQX	.	GT	./.
chr1	44450657	.	G	.	.	LowGQX	END=44450681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44450682	.	A	.	.	LowGQX	.	GT	./.
chr1	44450683	.	C	.	.	LowGQX	END=44450728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44450729	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	44450948	.	A	.	.	LowGQX	END=44450957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44450958	.	A	.	.	LowGQX	.	GT	./.
chr1	44450959	.	T	.	.	LowGQX	END=44450966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44450967	.	A	.	.	LowGQX	.	GT	./.
chr1	44450968	.	C	.	.	LowGQX	END=44450978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44450979	.	T	.	.	LowGQX	.	GT	./.
chr1	44450980	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44450981	.	T	.	.	LowGQX	.	GT	./.
chr1	44450982	.	C	.	.	LowGQX	END=44450997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44450998	.	T	.	.	LowGQX	.	GT	./.
chr1	44450999	.	C	.	.	LowGQX	END=44451010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44451011	.	A	.	.	LowGQX	.	GT	./.
chr1	44451012	.	T	.	.	LowGQX	END=44451019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44451020	.	T	.	.	LowGQX	.	GT	./.
chr1	44451021	.	T	.	.	LowGQX	END=44451074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44451187	.	A	.	.	LowGQX	END=44451233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44451234	.	C	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.30:33,0,33:60:5:0.667
chr1	44451235	.	G	.	.	LowGQX	END=44451295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44455968	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44455969	.	G	.	.	LowGQX	.	GT	./.
chr1	44455970	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44455971	.	T	.	.	LowGQX	.	GT	./.
chr1	44455972	.	T	.	.	LowGQX	END=44455974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44455975	.	C	.	.	LowGQX	.	GT	./.
chr1	44455976	.	C	.	.	LowGQX	END=44455977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44455978	.	A	.	.	LowGQX	.	GT	./.
chr1	44455979	.	G	.	.	LowGQX	END=44455981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44455982	.	T	.	.	LowGQX	END=44455983	GT	./.
chr1	44455984	.	A	.	.	LowGQX	END=44455985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44455986	.	A	.	.	LowGQX	.	GT	./.
chr1	44455987	.	A	.	.	LowGQX	END=44455989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44455990	.	C	.	.	LowGQX	.	GT	./.
chr1	44455991	.	G	.	.	LowGQX	END=44455997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44455998	.	A	.	.	LowGQX	END=44456000	GT	./.
chr1	44456001	.	A	.	.	LowGQX	END=44456004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44456005	.	A	.	.	LowGQX	END=44456047	GT	./.
chr1	44456048	.	G	.	.	LowGQX	END=44456053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44456054	.	G	.	.	LowGQX	.	GT	./.
chr1	44456055	.	C	.	.	LowGQX	END=44456057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44456058	.	C	.	.	LowGQX	.	GT	./.
chr1	44456059	.	C	.	.	LowGQX	END=44456060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44456061	.	C	.	.	LowGQX	.	GT	./.
chr1	44456062	.	T	.	.	LowGQX	END=44456065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44456066	.	C	.	.	LowGQX	.	GT	./.
chr1	44456067	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44456068	.	C	.	.	LowGQX	END=44456071	GT	./.
chr1	44456072	.	T	.	.	LowGQX	END=44456074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44456075	.	C	.	.	LowGQX	END=44456080	GT	./.
chr1	44456081	.	G	.	.	LowGQX	END=44456083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44456084	.	C	.	.	LowGQX	END=44456086	GT	./.
chr1	44456087	.	T	.	.	LowGQX	END=44456088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44456089	.	G	.	.	LowGQX	.	GT	./.
chr1	44456090	.	G	.	.	LowGQX	END=44456091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44456092	.	G	.	.	LowGQX	.	GT	./.
chr1	44456093	.	G	.	.	LowGQX	END=44456094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44456095	.	C	.	.	LowGQX	.	GT	./.
chr1	44456096	.	T	.	.	LowGQX	END=44456097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44456098	.	C	.	.	LowGQX	END=44456100	GT	./.
chr1	44456101	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44456102	.	G	.	.	LowGQX	END=44456103	GT	./.
chr1	44456104	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44456105	.	G	.	.	LowGQX	.	GT	./.
chr1	44456106	.	C	.	.	LowGQX	END=44456108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44456109	.	C	.	.	LowGQX	.	GT	./.
chr1	44456110	.	C	.	.	LowGQX	END=44456112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44456113	.	G	.	.	LowGQX	END=44456115	GT	./.
chr1	44456116	.	G	.	.	LowGQX	END=44456122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44457280	.	G	.	.	LowGQX	END=44457678	GT	./.
chr1	44457882	.	A	.	.	LowGQX	END=44457938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44457939	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	44457940	.	C	.	.	LowGQX	END=44457946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44457947	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	44457948	.	T	.	.	LowGQX	.	GT	./.
chr1	44457949	.	C	.	.	LowGQX	END=44457950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44457951	.	C	.	.	LowGQX	.	GT	./.
chr1	44457952	.	T	.	.	LowGQX	END=44457967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44457968	.	C	.	.	LowGQX	.	GT	./.
chr1	44457969	.	T	.	.	LowGQX	END=44457981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44457982	.	T	.	.	LowGQX	.	GT	./.
chr1	44457983	.	C	.	.	LowGQX	END=44457986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44457987	.	T	.	.	LowGQX	.	GT	./.
chr1	44457988	.	A	.	.	LowGQX	END=44457990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44457991	.	G	.	.	LowGQX	.	GT	./.
chr1	44457992	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44457993	.	A	.	.	LowGQX	END=44457994	GT	./.
chr1	44457995	.	C	.	.	LowGQX	END=44457997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44457998	.	T	.	.	LowGQX	.	GT	./.
chr1	44457999	.	T	.	.	LowGQX	END=44458004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44458005	.	A	.	.	LowGQX	END=44458019	GT	./.
chr1	44458020	.	T	.	.	LowGQX	END=44458025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44458026	.	A	.	.	LowGQX	END=44458028	GT	./.
chr1	44458029	.	G	.	.	LowGQX	END=44458030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44458031	.	C	.	.	LowGQX	END=44458032	GT	./.
chr1	44458033	.	C	.	.	LowGQX	END=44458034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44458035	.	G	.	.	LowGQX	END=44458036	GT	./.
chr1	44458037	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44458038	.	A	.	.	LowGQX	.	GT	./.
chr1	44458039	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44458040	.	A	.	.	LowGQX	END=44458046	GT	./.
chr1	44458047	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44458048	.	C	.	.	LowGQX	END=44458049	GT	./.
chr1	44458050	.	G	.	.	LowGQX	END=44458051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44458052	.	G	.	.	LowGQX	.	GT	./.
chr1	44458053	.	A	.	.	LowGQX	END=44458060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44458061	.	T	.	.	LowGQX	.	GT	./.
chr1	44458193	.	A	.	.	LowGQX	END=44458268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44458269	.	T	.	.	LowGQX	END=44458313	GT	./.
chr1	44459548	.	T	.	.	LowGQX	END=44459647	GT	./.
chr1	44460758	.	C	.	.	LowGQX	END=44460826	GT	./.
chr1	44460827	.	T	.	.	LowGQX	END=44460857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44461258	.	C	.	.	LowGQX	END=44461357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44461440	.	T	.	.	LowGQX	END=44461539	GT	./.
chr1	44461608	.	A	.	.	LowGQX	END=44461626	GT	./.
chr1	44461627	.	C	.	.	LowGQX	END=44461753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44461754	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	44461755	.	C	.	.	LowGQX	END=44461821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44461822	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	44461823	.	C	.	.	LowGQX	END=44461834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44463205	.	T	.	.	LowGQX	END=44463413	GT	./.
chr1	44463525	.	A	.	.	LowGQX	END=44463699	GT	./.
chr1	44466436	.	C	.	.	LowGQX	END=44466486	GT	./.
chr1	44466487	.	G	.	.	LowGQX	END=44466488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466489	.	G	.	.	LowGQX	.	GT	./.
chr1	44466490	.	T	.	.	LowGQX	END=44466497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466498	.	A	.	.	LowGQX	.	GT	./.
chr1	44466499	.	T	.	.	LowGQX	END=44466507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466508	.	C	.	.	LowGQX	.	GT	./.
chr1	44466509	.	A	.	.	LowGQX	END=44466519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466520	.	C	.	.	LowGQX	.	GT	./.
chr1	44466521	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466522	.	G	.	.	LowGQX	.	GT	./.
chr1	44466523	.	G	.	.	LowGQX	END=44466525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466526	.	G	.	.	LowGQX	.	GT	./.
chr1	44466527	.	T	.	.	LowGQX	END=44466536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466537	.	G	.	.	LowGQX	END=44466540	GT	./.
chr1	44466541	.	T	.	.	LowGQX	END=44466543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466544	.	A	.	.	LowGQX	.	GT	./.
chr1	44466545	.	G	.	.	LowGQX	END=44466551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466552	.	G	.	.	LowGQX	.	GT	./.
chr1	44466553	.	G	.	.	LowGQX	END=44466554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466555	.	G	.	.	LowGQX	.	GT	./.
chr1	44466556	.	T	.	.	LowGQX	END=44466562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466563	.	A	.	.	LowGQX	.	GT	./.
chr1	44466564	.	C	.	.	LowGQX	END=44466571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466572	.	A	.	.	LowGQX	END=44466573	GT	./.
chr1	44466574	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466575	.	G	.	.	LowGQX	.	GT	./.
chr1	44466576	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466577	.	G	.	.	LowGQX	.	GT	./.
chr1	44466578	.	T	.	.	LowGQX	END=44466580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466581	.	G	.	.	LowGQX	.	GT	./.
chr1	44466582	.	C	.	.	LowGQX	END=44466591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466592	.	G	.	.	LowGQX	.	GT	./.
chr1	44466593	.	C	.	.	LowGQX	END=44466594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466595	.	G	.	.	LowGQX	.	GT	./.
chr1	44466596	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466597	.	G	.	.	LowGQX	END=44466598	GT	./.
chr1	44466599	.	C	.	.	LowGQX	END=44466601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466602	.	G	.	.	LowGQX	END=44466603	GT	./.
chr1	44466604	.	G	.	.	LowGQX	END=44466606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466607	.	G	.	.	LowGQX	.	GT	./.
chr1	44466608	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466609	.	C	.	.	LowGQX	.	GT	./.
chr1	44466610	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466611	.	G	.	.	LowGQX	.	GT	./.
chr1	44466612	.	A	.	.	LowGQX	END=44466613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466614	.	G	.	.	LowGQX	.	GT	./.
chr1	44466615	.	C	.	.	LowGQX	END=44466618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466619	.	A	.	.	LowGQX	.	GT	./.
chr1	44466620	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466621	.	T	.	.	LowGQX	.	GT	./.
chr1	44466622	.	G	.	.	LowGQX	END=44466625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466626	.	A	.	.	LowGQX	.	GT	./.
chr1	44466627	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44466628	.	C	.	.	LowGQX	.	GT	./.
chr1	44466629	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44466630	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	44466631	.	A	.	.	LowGQX	END=44466632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44466633	.	A	.	.	LowGQX	.	GT	./.
chr1	44466634	.	T	.	.	LowGQX	END=44466637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44466638	.	C	.	.	LowGQX	.	GT	./.
chr1	44466639	.	A	.	.	LowGQX	END=44466643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466644	.	G	.	.	LowGQX	.	GT	./.
chr1	44466645	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466646	.	C	.	.	LowGQX	END=44466647	GT	./.
chr1	44466648	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466649	.	C	.	.	LowGQX	END=44466651	GT	./.
chr1	44466652	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466653	.	C	.	.	LowGQX	.	GT	./.
chr1	44466654	.	A	.	.	LowGQX	END=44466657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466658	.	T	.	.	LowGQX	.	GT	./.
chr1	44466659	.	G	.	.	LowGQX	END=44466660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466661	.	A	.	.	LowGQX	.	GT	./.
chr1	44466662	.	G	.	.	LowGQX	END=44466663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466664	.	A	.	.	LowGQX	.	GT	./.
chr1	44466665	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466666	.	A	.	.	LowGQX	END=44466667	GT	./.
chr1	44466668	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466669	.	A	.	.	LowGQX	.	GT	./.
chr1	44466670	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466671	.	C	.	.	LowGQX	.	GT	./.
chr1	44466672	.	A	.	.	LowGQX	END=44466673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466674	.	C	.	.	LowGQX	END=44466675	GT	./.
chr1	44466676	.	A	.	.	LowGQX	END=44466679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466680	.	G	.	.	LowGQX	.	GT	./.
chr1	44466681	.	A	.	.	LowGQX	END=44466683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466684	.	C	.	.	LowGQX	.	GT	./.
chr1	44466685	.	T	.	.	LowGQX	END=44466719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466720	.	A	.	.	LowGQX	.	GT	./.
chr1	44466721	.	T	.	.	LowGQX	END=44466729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44466834	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44466835	.	C	.	.	LowGQX	.	GT	./.
chr1	44466836	.	C	.	.	LowGQX	END=44466839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	44466840	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	44466841	.	T	.	.	LowGQX	.	GT	./.
chr1	44466842	.	G	.	.	LowGQX	END=44466843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466844	.	T	.	.	LowGQX	END=44466845	GT	./.
chr1	44466846	.	A	.	.	LowGQX	END=44466848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466849	.	G	.	.	LowGQX	.	GT	./.
chr1	44466850	.	G	.	.	LowGQX	END=44466851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466852	.	A	.	.	LowGQX	END=44466853	GT	./.
chr1	44466854	.	G	.	.	LowGQX	END=44466856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466857	.	C	.	.	LowGQX	END=44466858	GT	./.
chr1	44466859	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466860	.	C	.	.	LowGQX	END=44466861	GT	./.
chr1	44466862	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466863	.	G	.	.	LowGQX	END=44466865	GT	./.
chr1	44466866	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466867	.	C	.	.	LowGQX	.	GT	./.
chr1	44466868	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466869	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	44466870	.	G	.	.	LowGQX	END=44466897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466898	.	T	.	.	LowGQX	.	GT	./.
chr1	44466899	.	C	.	.	LowGQX	END=44466962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44466963	.	A	.	.	LowGQX	END=44466972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	44467060	.	A	.	.	LowGQX	END=44467062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	44467063	.	T	.	42.03	LowGQX	DP=8;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:8:12.04:60:12
chr1	44467064	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	44467065	.	A	.	39.02	LowGQX	DP=8;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:8:9.03:60:9
chr1	44467066	.	G	.	.	LowGQX	END=44467090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	44467091	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	44467092	.	G	.	.	LowGQX	END=44467093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	44467094	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	44467095	.	G	.	.	LowGQX	END=44467098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	44467099	.	A	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	44467100	.	A	.	.	LowGQX	END=44467102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	44467103	.	G	.	.	LowGQX	END=44467109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	44467110	.	C	.	.	LowGQX	END=44467111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	44467112	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	44467113	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	44467114	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	44467115	.	G	.	.	LowGQX	END=44467123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	44467124	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	44467125	.	G	.	.	LowGQX	END=44467135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	44467136	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	44467137	.	G	.	.	LowGQX	END=44467143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	44467144	.	T	.	.	LowGQX	END=44467149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	44467150	.	T	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	44467151	.	A	.	.	LowGQX	END=44467157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	44467158	.	G	.	.	LowGQX	END=44467170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	44467171	.	G	.	.	LowGQX	END=44467172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	44467173	.	G	.	.	LowGQX	END=44467186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	44467187	.	C	.	.	LowGQX	END=44467261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44467262	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	44467263	.	G	.	.	LowGQX	END=44467301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44467983	.	A	.	.	LowGQX	END=44468023	GT	./.
chr1	44468024	.	G	.	.	LowGQX	END=44468029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44468030	.	A	.	.	LowGQX	.	GT	./.
chr1	44468031	.	G	.	.	LowGQX	END=44468047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44468048	.	C	.	.	LowGQX	.	GT	./.
chr1	44468049	.	C	.	.	LowGQX	END=44468090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44468182	.	A	.	.	LowGQX	END=44468221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44468222	.	A	.	.	LowGQX	END=44468320	GT	./.
chr1	44468523	.	G	.	.	LowGQX	END=44468659	GT	./.
chr1	44474023	.	A	.	.	LowGQX	END=44474036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44474037	.	T	.	.	LowGQX	.	GT	./.
chr1	44474038	.	C	.	.	LowGQX	END=44474057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44474058	.	A	.	.	LowGQX	.	GT	./.
chr1	44474059	.	G	.	.	LowGQX	END=44474061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44474062	.	T	.	.	LowGQX	.	GT	./.
chr1	44474063	.	G	.	.	LowGQX	END=44474132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44474133	.	T	.	.	LowGQX	.	GT	./.
chr1	44474134	.	C	.	.	LowGQX	END=44474217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44474218	.	A	.	.	LowGQX	END=44474297	GT	./.
chr1	44475635	.	A	.	.	LowGQX	END=44475770	GT	./.
chr1	44476396	.	A	.	.	LowGQX	END=44476397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	44476398	.	C	.	.	LowGQX	END=44476448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	44476449	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:15:60
chr1	44476450	.	C	.	.	LowGQX	END=44476462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:60
chr1	44476463	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:0:60
chr1	44476464	.	C	.	.	LowGQX	END=44476471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	44476472	.	A	.	.	LowGQX	END=44476490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	44476491	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:60
chr1	44476492	.	G	.	.	LowGQX	END=44476503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	44476504	.	C	.	.	LowGQX	END=44476510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:60
chr1	44476511	.	A	.	.	LowGQX	END=44476529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	44476530	.	T	.	.	LowGQX	END=44476544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	44476545	.	C	.	4.58	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.01:60:0
chr1	44476546	.	A	.	.	LowGQX	END=44476556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	44477231	.	A	.	.	LowGQX	END=44477396	GT	./.
chr1	44482653	.	C	.	.	LowGQX	END=44482692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44482693	.	G	T	9.80	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=4.90;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,1:2:3.01:39,3,0:60:3:0.500
chr1	44482694	.	C	.	.	LowGQX	END=44482850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44482851	.	T	.	.	LowGQX	END=44482866	GT	./.
chr1	44489885	.	C	.	.	LowGQX	END=44489984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44584571	.	C	.	.	LowGQX	END=44584579	GT	./.
chr1	44584580	.	A	.	.	LowGQX	END=44584592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44584593	.	C	.	.	LowGQX	.	GT	./.
chr1	44584594	.	G	.	.	LowGQX	END=44584598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44584599	.	C	.	.	LowGQX	.	GT	./.
chr1	44584600	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44584601	.	G	.	.	LowGQX	.	GT	./.
chr1	44584602	.	A	.	.	LowGQX	END=44584612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44584613	.	G	.	.	LowGQX	.	GT	./.
chr1	44584614	.	A	.	.	LowGQX	END=44584618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44584619	.	G	.	.	LowGQX	.	GT	./.
chr1	44584620	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44584621	.	G	.	.	LowGQX	.	GT	./.
chr1	44584622	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44584623	.	A	.	.	LowGQX	.	GT	./.
chr1	44584624	.	G	.	.	LowGQX	END=44584631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44584632	.	G	.	.	LowGQX	.	GT	./.
chr1	44584633	.	G	.	.	LowGQX	END=44584639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44584640	.	G	.	.	LowGQX	.	GT	./.
chr1	44584641	.	C	.	.	LowGQX	END=44584649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44584650	.	A	.	.	LowGQX	END=44584651	GT	./.
chr1	44584652	.	G	.	.	LowGQX	END=44584653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44584654	.	T	.	.	LowGQX	END=44584655	GT	./.
chr1	44584656	.	C	.	.	LowGQX	END=44584669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44584670	.	G	.	.	LowGQX	.	GT	./.
chr1	44595023	.	A	.	.	LowGQX	END=44595870	GT	./.
chr1	44596182	.	A	.	.	LowGQX	END=44596400	GT	./.
chr1	44596401	.	G	.	.	LowGQX	END=44596430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44679424	.	C	.	.	LowGQX	END=44679532	GT	./.
chr1	44680018	.	T	.	.	LowGQX	END=44680117	GT	./.
chr1	44680200	.	C	.	.	LowGQX	END=44680299	GT	./.
chr1	44680373	.	A	.	.	LowGQX	END=44680523	GT	./.
chr1	44680524	.	G	.	.	LowGQX	END=44680525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44680526	.	G	.	.	LowGQX	.	GT	./.
chr1	44680527	.	C	.	.	LowGQX	END=44680530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44680531	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	44680532	.	G	.	.	LowGQX	END=44680536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44680537	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	44680538	.	G	.	.	LowGQX	END=44680543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44680544	.	G	.	.	LowGQX	.	GT	./.
chr1	44680545	.	A	.	.	LowGQX	END=44680561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44680562	.	T	.	.	LowGQX	.	GT	./.
chr1	44680563	.	T	.	.	LowGQX	END=44680572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44680573	.	A	.	.	LowGQX	END=44680574	GT	./.
chr1	44680575	.	G	.	.	LowGQX	END=44680587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44680588	.	G	.	.	LowGQX	END=44680589	GT	./.
chr1	44680590	.	A	.	.	LowGQX	END=44680635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44680636	.	C	.	.	LowGQX	.	GT	./.
chr1	44680637	.	T	.	.	LowGQX	END=44680646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	44680647	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	44680648	.	A	.	.	LowGQX	END=44680664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	44680665	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	44680666	.	A	.	.	LowGQX	END=44680668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	44680669	.	C	G	9.31	LowGQ;LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=-0.736;SB=-33.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:25.53:39,0,26:60:9:0.667
chr1	44680670	.	T	.	.	LowGQX	END=44680699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44680700	.	C	.	.	LowGQX	.	GT	./.
chr1	44680701	.	T	.	.	LowGQX	END=44680721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44680722	.	T	.	.	LowGQX	.	GT	./.
chr1	44680723	.	A	.	.	LowGQX	END=44680745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44680746	.	C	.	.	LowGQX	.	GT	./.
chr1	44680747	.	C	.	.	LowGQX	END=44680749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44680750	.	G	.	.	LowGQX	.	GT	./.
chr1	44680751	.	G	.	.	LowGQX	END=44680754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44680755	.	C	.	.	LowGQX	.	GT	./.
chr1	44680756	.	C	.	.	LowGQX	END=44680823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44680824	.	A	.	.	LowGQX	END=44680876	GT	./.
chr1	44680937	.	A	.	.	LowGQX	END=44680990	GT	./.
chr1	44680991	.	G	.	.	LowGQX	END=44681021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44681022	.	C	A	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	44681023	.	C	.	.	LowGQX	END=44681027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44681028	.	G	.	.	LowGQX	.	GT	./.
chr1	44681029	.	T	.	.	LowGQX	END=44681036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44683867	.	G	.	.	LowGQX	END=44683873	GT	./.
chr1	44683874	.	G	.	.	LowGQX	END=44683886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683887	.	G	.	.	LowGQX	.	GT	./.
chr1	44683888	.	C	.	.	LowGQX	END=44683899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683900	.	G	.	.	LowGQX	END=44683901	GT	./.
chr1	44683902	.	A	.	.	LowGQX	END=44683908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683909	.	G	.	.	LowGQX	.	GT	./.
chr1	44683910	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683911	.	C	.	.	LowGQX	.	GT	./.
chr1	44683912	.	A	.	.	LowGQX	END=44683914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683915	.	G	.	.	LowGQX	.	GT	./.
chr1	44683916	.	G	.	.	LowGQX	END=44683917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683918	.	G	.	.	LowGQX	END=44683919	GT	./.
chr1	44683920	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683921	.	T	.	.	LowGQX	.	GT	./.
chr1	44683922	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683923	.	G	.	.	LowGQX	.	GT	./.
chr1	44683924	.	A	.	.	LowGQX	END=44683928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683929	.	G	.	.	LowGQX	END=44683930	GT	./.
chr1	44683931	.	T	.	.	LowGQX	END=44683933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683934	.	A	.	.	LowGQX	.	GT	./.
chr1	44683935	.	C	.	.	LowGQX	END=44683936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683937	.	T	.	.	LowGQX	END=44683938	GT	./.
chr1	44683939	.	A	.	.	LowGQX	END=44683946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683947	.	C	.	.	LowGQX	END=44683949	GT	./.
chr1	44683950	.	G	.	.	LowGQX	END=44683952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683953	.	T	.	.	LowGQX	END=44683954	GT	./.
chr1	44683955	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683956	.	C	.	.	LowGQX	END=44683957	GT	./.
chr1	44683958	.	C	.	.	LowGQX	END=44683962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683963	.	G	.	.	LowGQX	.	GT	./.
chr1	44683964	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683965	.	G	.	.	LowGQX	.	GT	./.
chr1	44683966	.	T	.	.	LowGQX	END=44683967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683968	.	C	.	.	LowGQX	.	GT	./.
chr1	44683969	.	C	.	.	LowGQX	END=44683972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683973	.	G	.	.	LowGQX	.	GT	./.
chr1	44683974	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683975	.	G	.	.	LowGQX	.	GT	./.
chr1	44683976	.	C	.	.	LowGQX	END=44683978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683979	.	G	.	.	LowGQX	END=44683980	GT	./.
chr1	44683981	.	A	.	.	LowGQX	END=44683984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683985	.	T	.	.	LowGQX	.	GT	./.
chr1	44683986	.	G	.	.	LowGQX	END=44683987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683988	.	G	.	.	LowGQX	.	GT	./.
chr1	44683989	.	C	.	.	LowGQX	END=44683992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44683993	.	T	.	.	LowGQX	END=44683996	GT	./.
chr1	44683997	.	T	.	.	LowGQX	END=44684002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684003	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	44684004	.	T	.	.	LowGQX	END=44684006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44684007	.	G	.	.	LowGQX	.	GT	./.
chr1	44684008	.	A	.	.	LowGQX	END=44684009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44684010	.	C	.	.	LowGQX	.	GT	./.
chr1	44684011	.	A	.	.	LowGQX	END=44684014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44684015	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	44684016	.	T	.	.	LowGQX	END=44684022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44684023	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	44684024	.	T	.	.	LowGQX	END=44684025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684026	.	A	.	.	LowGQX	.	GT	./.
chr1	44684027	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684028	.	C	.	.	LowGQX	.	GT	./.
chr1	44684029	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684030	.	C	.	.	LowGQX	END=44684031	GT	./.
chr1	44684032	.	A	.	.	LowGQX	END=44684047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684048	.	T	.	.	LowGQX	.	GT	./.
chr1	44684049	.	A	.	.	LowGQX	END=44684054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684055	.	G	.	.	LowGQX	.	GT	./.
chr1	44684056	.	A	.	.	LowGQX	END=44684058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684059	.	C	.	.	LowGQX	.	GT	./.
chr1	44684060	.	T	.	.	LowGQX	END=44684062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684063	.	C	.	.	LowGQX	.	GT	./.
chr1	44684064	.	C	.	.	LowGQX	END=44684066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684067	.	C	.	.	LowGQX	.	GT	./.
chr1	44684068	.	T	.	.	LowGQX	END=44684074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684075	.	C	.	.	LowGQX	.	GT	./.
chr1	44684076	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684077	.	T	.	.	LowGQX	END=44684078	GT	./.
chr1	44684079	.	A	.	.	LowGQX	END=44684085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684086	.	G	.	.	LowGQX	.	GT	./.
chr1	44684087	.	C	.	.	LowGQX	END=44684088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684089	.	T	.	.	LowGQX	.	GT	./.
chr1	44684090	.	T	.	.	LowGQX	END=44684093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684094	.	C	.	.	LowGQX	.	GT	./.
chr1	44684095	.	T	.	.	LowGQX	END=44684097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684098	.	G	.	.	LowGQX	.	GT	./.
chr1	44684099	.	T	.	.	LowGQX	END=44684100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684101	.	T	.	.	LowGQX	.	GT	./.
chr1	44684102	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684103	.	G	.	.	LowGQX	.	GT	./.
chr1	44684104	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684105	.	T	.	.	LowGQX	.	GT	./.
chr1	44684106	.	G	.	.	LowGQX	END=44684115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684116	.	A	.	.	LowGQX	.	GT	./.
chr1	44684117	.	C	.	.	LowGQX	END=44684121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684122	.	A	.	.	LowGQX	.	GT	./.
chr1	44684123	.	T	.	.	LowGQX	END=44684141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684142	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	44684143	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684258	.	A	.	.	LowGQX	END=44684429	GT	./.
chr1	44684726	.	A	.	.	LowGQX	END=44684781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684782	.	A	.	.	LowGQX	.	GT	./.
chr1	44684783	.	A	.	.	LowGQX	END=44684806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684807	.	A	.	.	LowGQX	.	GT	./.
chr1	44684808	.	C	.	.	LowGQX	END=44684815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684816	.	A	.	.	LowGQX	END=44684817	GT	./.
chr1	44684818	.	C	.	.	LowGQX	END=44684821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684822	.	T	.	.	LowGQX	.	GT	./.
chr1	44684823	.	C	.	.	LowGQX	END=44684849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684850	.	G	.	.	LowGQX	.	GT	./.
chr1	44684851	.	C	.	.	LowGQX	END=44684896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684897	.	A	.	.	LowGQX	.	GT	./.
chr1	44684898	.	G	.	.	LowGQX	END=44684908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684909	.	A	.	.	LowGQX	.	GT	./.
chr1	44684910	.	G	.	.	LowGQX	END=44684912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44684913	.	G	.	.	LowGQX	.	GT	./.
chr1	44684914	.	G	.	.	LowGQX	END=44684915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44685064	.	G	.	.	LowGQX	END=44685163	GT	./.
chr1	44685465	.	G	.	.	LowGQX	END=44685564	GT	./.
chr1	44685687	.	A	.	.	LowGQX	END=44685983	GT	./.
chr1	44686211	.	T	.	.	LowGQX	END=44686310	GT	./.
chr1	44687222	.	T	.	.	LowGQX	END=44687321	GT	./.
chr1	44713609	.	A	.	.	LowGQX	END=44713712	GT	./.
chr1	44749650	.	G	.	.	LowGQX	END=44749714	GT	./.
chr1	44749715	.	T	.	.	LowGQX	END=44749749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44750494	.	T	.	.	LowGQX	END=44750593	GT	./.
chr1	44773978	.	T	.	.	LowGQX	END=44774077	GT	./.
chr1	44778769	.	T	.	.	LowGQX	END=44778861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44778862	.	T	.	.	LowGQX	END=44778874	GT	./.
chr1	44778875	.	A	.	.	LowGQX	END=44778920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44785298	.	A	.	.	LowGQX	END=44785422	GT	./.
chr1	44788396	.	C	.	.	LowGQX	END=44788540	GT	./.
chr1	44804715	.	A	.	.	LowGQX	END=44804996	GT	./.
chr1	44818510	.	C	.	.	LowGQX	END=44818609	GT	./.
chr1	44820531	.	C	.	.	LowGQX	END=44820581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44820582	.	A	.	.	LowGQX	.	GT	./.
chr1	44820583	.	C	.	.	LowGQX	END=44820600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44820601	.	C	.	.	LowGQX	.	GT	./.
chr1	44820602	.	A	.	.	LowGQX	END=44820617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44820618	.	A	.	.	LowGQX	.	GT	./.
chr1	44820619	.	G	.	.	LowGQX	END=44820636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44820637	.	A	.	.	LowGQX	.	GT	./.
chr1	44820638	.	C	.	.	LowGQX	END=44820672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44820673	.	T	.	.	LowGQX	.	GT	./.
chr1	44820674	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	44820675	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	44820676	.	G	.	.	LowGQX	END=44820741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	44877768	.	C	.	.	LowGQX	END=44878393	GT	./.
chr1	44878394	.	T	.	.	LowGQX	END=44878398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45038626	.	T	.	.	LowGQX	END=45038638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45038639	.	G	.	.	LowGQX	.	GT	./.
chr1	45038640	.	G	.	.	LowGQX	END=45038657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45038658	.	T	.	.	LowGQX	.	GT	./.
chr1	45038659	.	C	.	.	LowGQX	END=45038725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45079835	.	A	.	.	LowGQX	END=45079916	GT	./.
chr1	45079917	.	C	.	.	LowGQX	END=45079971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45088387	.	T	.	.	LowGQX	END=45088486	GT	./.
chr1	45091967	.	A	.	.	LowGQX	END=45092072	GT	./.
chr1	45097804	.	C	.	.	LowGQX	END=45097903	GT	./.
chr1	45097987	.	C	.	.	LowGQX	END=45098086	GT	./.
chr1	45101215	.	A	.	.	LowGQX	END=45101338	GT	./.
chr1	45101669	.	G	.	.	LowGQX	END=45101836	GT	./.
chr1	45102044	.	T	.	.	LowGQX	END=45102143	GT	./.
chr1	45110368	.	A	.	.	LowGQX	END=45110468	GT	./.
chr1	45110661	.	T	.	.	LowGQX	END=45110695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45110696	.	C	.	.	LowGQX	.	GT	./.
chr1	45110697	.	A	.	.	LowGQX	END=45110703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45110704	.	G	.	.	LowGQX	.	GT	./.
chr1	45110705	.	A	.	.	LowGQX	END=45110706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45110707	.	C	.	.	LowGQX	.	GT	./.
chr1	45110708	.	C	.	.	LowGQX	END=45110720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45110721	.	G	.	.	LowGQX	.	GT	./.
chr1	45110722	.	G	.	.	LowGQX	END=45110738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45110739	.	G	.	.	LowGQX	.	GT	./.
chr1	45110740	.	G	.	.	LowGQX	END=45110746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45110747	.	T	.	.	LowGQX	.	GT	./.
chr1	45110748	.	C	.	.	LowGQX	END=45110760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45110871	.	T	.	.	LowGQX	END=45110970	GT	./.
chr1	45111031	.	C	.	.	LowGQX	END=45111162	GT	./.
chr1	45115331	.	A	.	.	LowGQX	END=45115419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45115420	.	T	.	.	LowGQX	.	GT	./.
chr1	45115421	.	T	.	.	LowGQX	END=45115443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45115513	.	G	.	.	LowGQX	END=45115701	GT	./.
chr1	45116362	.	T	.	.	LowGQX	END=45116461	GT	./.
chr1	45120229	.	C	.	.	LowGQX	END=45120701	GT	./.
chr1	45120702	.	G	.	.	LowGQX	END=45120708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45120709	.	A	.	.	LowGQX	.	GT	./.
chr1	45120710	.	G	.	.	LowGQX	END=45120722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45120723	.	G	.	.	LowGQX	.	GT	./.
chr1	45120724	.	T	.	.	LowGQX	END=45120824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45120825	.	T	.	.	LowGQX	.	GT	./.
chr1	45120826	.	G	.	.	LowGQX	END=45120857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45120858	.	T	.	.	LowGQX	END=45120883	GT	./.
chr1	45125844	.	A	.	.	LowGQX	END=45125969	GT	./.
chr1	45139984	.	C	.	.	LowGQX	END=45140083	GT	./.
chr1	45155369	.	C	.	.	LowGQX	END=45155575	GT	./.
chr1	45162758	.	T	.	.	LowGQX	END=45162857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	45163734	.	G	.	.	LowGQX	END=45163788	GT	./.
chr1	45163789	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45163790	.	A	.	.	LowGQX	.	GT	./.
chr1	45163791	.	T	.	.	LowGQX	END=45163794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45163795	.	T	.	.	LowGQX	END=45163796	GT	./.
chr1	45163797	.	G	.	.	LowGQX	END=45163803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45163804	.	G	.	.	LowGQX	.	GT	./.
chr1	45163805	.	A	.	.	LowGQX	END=45163815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45163816	.	G	.	.	LowGQX	.	GT	./.
chr1	45163817	.	G	.	.	LowGQX	END=45163818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45163819	.	G	.	.	LowGQX	.	GT	./.
chr1	45163820	.	G	.	.	LowGQX	END=45163833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45163834	.	T	.	.	LowGQX	END=45163837	GT	./.
chr1	45163838	.	A	.	.	LowGQX	END=45163844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45163845	.	T	.	.	LowGQX	.	GT	./.
chr1	45163846	.	T	.	.	LowGQX	END=45163853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45163854	.	T	.	.	LowGQX	.	GT	./.
chr1	45163855	.	T	.	.	LowGQX	END=45163865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45163866	.	G	.	.	LowGQX	.	GT	./.
chr1	45163867	.	C	.	.	LowGQX	END=45163873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45163874	.	T	.	.	LowGQX	.	GT	./.
chr1	45163875	.	A	.	.	LowGQX	END=45163877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45163878	.	A	.	.	LowGQX	.	GT	./.
chr1	45163879	.	G	.	.	LowGQX	END=45163890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45163891	.	T	.	.	LowGQX	.	GT	./.
chr1	45163892	.	G	.	.	LowGQX	END=45163898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45163899	.	A	.	.	LowGQX	.	GT	./.
chr1	45163900	.	T	.	.	LowGQX	END=45163901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45166594	.	G	.	.	LowGQX	END=45166791	GT	./.
chr1	45169753	.	C	.	.	LowGQX	END=45169852	GT	./.
chr1	45189793	.	G	.	.	LowGQX	END=45189916	GT	./.
chr1	45189978	.	T	.	.	LowGQX	END=45190077	GT	./.
chr1	45190160	.	G	.	.	LowGQX	END=45190379	GT	./.
chr1	45190423	.	G	.	.	LowGQX	END=45190522	GT	./.
chr1	45190799	.	T	.	.	LowGQX	END=45190898	GT	./.
chr1	45190962	.	G	.	.	LowGQX	END=45191075	GT	./.
chr1	45205603	.	G	.	.	LowGQX	END=45205714	GT	./.
chr1	45206583	.	A	.	.	LowGQX	END=45206682	GT	./.
chr1	45212380	.	C	.	.	LowGQX	END=45212479	GT	./.
chr1	45213004	.	T	.	.	LowGQX	END=45213159	GT	./.
chr1	45213299	.	T	.	.	LowGQX	END=45213398	GT	./.
chr1	45216112	.	A	.	.	LowGQX	END=45216212	GT	./.
chr1	45216213	.	C	.	.	LowGQX	END=45216238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45218802	.	A	.	.	LowGQX	END=45218928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45219403	.	A	.	.	LowGQX	END=45219507	GT	./.
chr1	45220360	.	T	.	.	LowGQX	END=45220381	GT	./.
chr1	45220382	.	T	.	.	LowGQX	END=45220461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45220462	.	T	.	.	LowGQX	END=45220519	GT	./.
chr1	45221579	.	G	.	.	LowGQX	END=45221678	GT	./.
chr1	45221745	.	A	.	.	LowGQX	END=45221911	GT	./.
chr1	45223224	.	C	.	.	LowGQX	END=45223267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	45223268	.	G	T	9.30	LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=3.10;ReadPosRankSum=0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr1	45223269	.	G	.	.	LowGQX	END=45223323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45223562	.	T	.	.	LowGQX	END=45223661	GT	./.
chr1	45223717	.	T	.	.	LowGQX	END=45223816	GT	./.
chr1	45224876	.	A	.	.	LowGQX	END=45225022	GT	./.
chr1	45225950	.	A	.	.	LowGQX	END=45226158	GT	./.
chr1	45226262	.	A	.	.	LowGQX	END=45226376	GT	./.
chr1	45227572	.	C	.	.	LowGQX	END=45227671	GT	./.
chr1	45227885	.	C	.	.	LowGQX	END=45227984	GT	./.
chr1	45228016	.	A	.	.	LowGQX	END=45228125	GT	./.
chr1	45228215	.	A	.	.	LowGQX	END=45228332	GT	./.
chr1	45232496	.	A	.	.	LowGQX	END=45232623	GT	./.
chr1	45232761	.	T	.	.	LowGQX	END=45232786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45232787	.	G	.	.	LowGQX	.	GT	./.
chr1	45232788	.	C	.	.	LowGQX	END=45232821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45232822	.	C	.	.	LowGQX	.	GT	./.
chr1	45232823	.	A	.	.	LowGQX	END=45232860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45241221	.	A	.	.	LowGQX	END=45241320	GT	./.
chr1	45241524	.	G	.	.	LowGQX	END=45241623	GT	./.
chr1	45241654	.	G	.	.	LowGQX	END=45241814	GT	./.
chr1	45242163	.	A	.	.	LowGQX	END=45242176	GT	./.
chr1	45242177	.	A	.	.	LowGQX	END=45242180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45242181	.	A	.	.	LowGQX	.	GT	./.
chr1	45242182	.	A	.	.	LowGQX	END=45242262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45242295	.	A	.	.	LowGQX	END=45242333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45242334	.	T	.	.	LowGQX	.	GT	./.
chr1	45242335	.	T	.	.	LowGQX	END=45242354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45242355	.	C	.	.	LowGQX	.	GT	./.
chr1	45242356	.	C	.	.	LowGQX	END=45242447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45242448	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	45243284	.	A	.	.	LowGQX	END=45243463	GT	./.
chr1	45243500	.	G	.	.	LowGQX	END=45243567	GT	./.
chr1	45243568	.	C	.	.	LowGQX	END=45243599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45243670	.	A	.	.	LowGQX	END=45243696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45243697	.	A	.	.	LowGQX	.	GT	./.
chr1	45243698	.	C	.	.	LowGQX	END=45243718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45243719	.	T	.	.	LowGQX	END=45243803	GT	./.
chr1	45244047	.	A	.	.	LowGQX	END=45244146	GT	./.
chr1	45244246	.	A	.	.	LowGQX	END=45244308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45244309	.	A	.	.	LowGQX	.	GT	./.
chr1	45244310	.	G	.	.	LowGQX	END=45244318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45244319	.	T	.	.	LowGQX	.	GT	./.
chr1	45244320	.	T	.	.	LowGQX	END=45244359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45249869	.	G	.	.	LowGQX	END=45250158	GT	./.
chr1	45250269	.	G	.	.	LowGQX	END=45250457	GT	./.
chr1	45250568	.	C	.	.	LowGQX	END=45250667	GT	./.
chr1	45250778	.	A	.	.	LowGQX	END=45250979	GT	./.
chr1	45251260	.	G	.	.	LowGQX	END=45251359	GT	./.
chr1	45251744	.	A	.	.	LowGQX	END=45251902	GT	./.
chr1	45252133	.	A	.	.	LowGQX	END=45252137	GT	./.
chr1	45252138	.	C	.	.	LowGQX	END=45252328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45252329	.	T	.	.	LowGQX	END=45252370	GT	./.
chr1	45253042	.	A	.	.	LowGQX	END=45253141	GT	./.
chr1	45253224	.	A	.	.	LowGQX	END=45253379	GT	./.
chr1	45266050	.	C	.	.	LowGQX	END=45266349	GT	./.
chr1	45266510	.	A	.	.	LowGQX	END=45266594	GT	./.
chr1	45266595	.	C	.	.	LowGQX	END=45266621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45266706	.	A	.	.	LowGQX	END=45266799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45266800	.	T	.	.	LowGQX	END=45266826	GT	./.
chr1	45267292	.	A	.	.	LowGQX	END=45267425	GT	./.
chr1	45267511	.	A	.	.	LowGQX	END=45267594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45267595	.	A	.	.	LowGQX	END=45267610	GT	./.
chr1	45268430	.	A	.	.	LowGQX	END=45268529	GT	./.
chr1	45268625	.	A	.	.	LowGQX	END=45268827	GT	./.
chr1	45268938	.	A	.	.	LowGQX	END=45268987	GT	./.
chr1	45268988	.	G	.	.	LowGQX	END=45269065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45269268	.	C	.	.	LowGQX	END=45269332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45269333	.	A	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	45269334	.	T	.	.	LowGQX	END=45269367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45269600	.	C	.	.	LowGQX	END=45269627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45269628	.	C	.	.	LowGQX	END=45269699	GT	./.
chr1	45269827	.	T	.	.	LowGQX	END=45269926	GT	./.
chr1	45270009	.	A	.	.	LowGQX	END=45270072	GT	./.
chr1	45270073	.	G	.	.	LowGQX	END=45270175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45270320	.	A	.	.	LowGQX	END=45270382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45270383	.	C	.	.	LowGQX	END=45270453	GT	./.
chr1	45270936	.	A	.	.	LowGQX	END=45271053	GT	./.
chr1	45271157	.	A	.	.	LowGQX	END=45271352	GT	./.
chr1	45271673	.	C	.	.	LowGQX	END=45272342	GT	./.
chr1	45274486	.	C	.	.	LowGQX	END=45274491	GT	./.
chr1	45274492	.	C	.	.	LowGQX	END=45274585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45275884	.	G	.	.	LowGQX	END=45275932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45275933	.	T	.	.	LowGQX	.	GT	./.
chr1	45275934	.	C	.	.	LowGQX	END=45275993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45275994	.	C	.	.	LowGQX	END=45276098	GT	./.
chr1	45276143	.	C	.	.	LowGQX	END=45276302	GT	./.
chr1	45277691	.	A	.	.	LowGQX	END=45277790	GT	./.
chr1	45278052	.	T	.	.	LowGQX	END=45278170	GT	./.
chr1	45278171	.	A	.	.	LowGQX	END=45278177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45278178	.	C	.	.	LowGQX	.	GT	./.
chr1	45278179	.	C	.	.	LowGQX	END=45278190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45278191	.	C	.	.	LowGQX	.	GT	./.
chr1	45278192	.	A	.	.	LowGQX	END=45278201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45278202	.	C	.	.	LowGQX	.	GT	./.
chr1	45278203	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45278204	.	T	.	.	LowGQX	.	GT	./.
chr1	45278205	.	G	.	.	LowGQX	END=45278211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45278652	.	C	.	.	LowGQX	END=45278751	GT	./.
chr1	45278809	.	G	.	.	LowGQX	END=45278941	GT	./.
chr1	45278995	.	C	.	.	LowGQX	END=45279013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45279014	.	A	.	.	LowGQX	.	GT	./.
chr1	45279015	.	C	.	.	LowGQX	END=45279024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45279025	.	A	.	.	LowGQX	.	GT	./.
chr1	45279026	.	C	.	.	LowGQX	END=45279057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45279058	.	C	.	.	LowGQX	.	GT	./.
chr1	45279059	.	G	.	.	LowGQX	END=45279061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45279062	.	C	.	.	LowGQX	.	GT	./.
chr1	45279063	.	G	.	.	LowGQX	END=45279076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45279077	.	C	.	.	LowGQX	.	GT	./.
chr1	45279078	.	G	.	.	LowGQX	END=45279088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45279089	.	T	.	.	LowGQX	.	GT	./.
chr1	45279090	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45279091	.	A	.	.	LowGQX	END=45279093	GT	./.
chr1	45279094	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45279095	.	A	.	.	LowGQX	.	GT	./.
chr1	45279096	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45279097	.	C	.	.	LowGQX	END=45279098	GT	./.
chr1	45279099	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45279100	.	A	.	.	LowGQX	.	GT	./.
chr1	45279101	.	G	.	.	LowGQX	END=45279115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45279116	.	C	.	.	LowGQX	END=45279171	GT	./.
chr1	45279309	.	G	.	.	LowGQX	END=45279346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45279347	.	T	.	.	LowGQX	END=45279481	GT	./.
chr1	45285973	.	C	.	.	LowGQX	END=45285980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	45285981	.	A	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	45285982	.	C	.	.	LowGQX	END=45285983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	45285984	.	C	.	.	LowGQX	END=45285986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	45285987	.	A	.	16.44	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.18:60:0
chr1	45285988	.	C	.	.	LowGQX	END=45285994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	45285995	.	G	.	.	LowGQX	END=45286001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	45286002	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	45286003	.	C	.	.	LowGQX	END=45286020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	45286021	.	C	.	.	LowGQX	END=45286022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	45286023	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	45286024	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	45286025	.	G	.	.	LowGQX	END=45286033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	45286034	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	45286035	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	45286036	.	T	.	.	LowGQX	END=45286039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	45286040	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	45286041	.	G	.	.	LowGQX	END=45286046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	45286047	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:1:60
chr1	45286048	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	45286049	.	G	.	.	LowGQX	END=45286052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	45286053	.	C	.	.	LowGQX	END=45286056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	45286057	.	C	.	.	LowGQX	END=45286058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	45286059	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	45286060	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	45286061	.	C	.	.	LowGQX	END=45286062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	45286063	.	G	.	.	LowGQX	END=45286068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	45286069	.	A	.	.	LowGQX	END=45286071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	45286072	.	C	.	.	LowGQX	END=45286073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	45286074	.	C	.	.	LowGQX	END=45286084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	45286085	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	45286086	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:27:60
chr1	45286087	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	45286088	.	G	.	.	LowGQX	END=45286092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	45286093	.	G	.	.	PASS	END=45286097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	45286098	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	45286099	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	45286100	.	G	.	.	LowGQX	END=45286101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	45286102	.	A	.	.	LowGQX	END=45286103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	45286104	.	G	.	.	LowGQX	END=45286107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	45286108	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	45286109	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	45286110	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	45286111	.	C	.	.	LowGQX	END=45286113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	45286114	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	45286115	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:21:60
chr1	45286116	.	G	.	.	PASS	END=45286118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	45286119	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	45286120	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	45286121	.	C	.	.	PASS	END=45286123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	45286124	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	45286125	.	C	.	.	PASS	END=45286126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	45286127	.	C	.	.	PASS	END=45286132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	45286339	.	G	.	.	PASS	END=45286406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	45286407	.	A	.	.	PASS	END=45286438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	45287496	.	A	.	.	LowGQX	END=45287595	GT	./.
chr1	45288036	.	C	.	.	PASS	END=45288057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	45288058	.	C	.	.	PASS	END=45288125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	45288126	.	G	.	.	PASS	END=45288194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	45288195	.	G	.	.	PASS	END=45288200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	45288201	.	T	.	273.72	PASS	DP=154;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:110:154:99:60:99
chr1	45288202	.	G	.	.	PASS	END=45288204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	45288205	.	T	.	237.65	PASS	DP=156;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:119:156:99:60:99
chr1	45288206	.	G	.	.	PASS	END=45288272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	45288273	.	C	.	.	PASS	END=45288338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	45288339	.	C	.	.	PASS	END=45288367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	45288368	.	G	.	.	PASS	END=45288392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	45288690	.	A	.	.	PASS	END=45288711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	45288712	.	T	.	.	PASS	END=45288724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	45288725	.	C	.	.	PASS	END=45288767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	45288768	.	C	.	.	PASS	END=45288807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	45288808	.	A	.	.	PASS	END=45289017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	45289018	.	C	.	.	PASS	END=45289039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	45289040	.	C	.	.	PASS	END=45289083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	45289084	.	T	.	.	PASS	END=45289108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	45291871	.	G	.	.	PASS	END=45291895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	45291896	.	T	.	.	PASS	END=45291927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	45291928	.	C	.	.	PASS	END=45292125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	45292126	.	G	.	.	PASS	END=45292147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	45292148	.	G	.	.	PASS	END=45292172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	45292173	.	G	.	.	PASS	END=45292319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:247:99:60
chr1	45292320	.	T	.	.	PASS	END=45292446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	45292447	.	A	.	.	PASS	END=45292491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	45292523	.	G	.	.	PASS	END=45292558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	45292559	.	C	.	.	PASS	END=45292801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	45292802	.	C	.	.	PASS	END=45292865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:322:99:60
chr1	45292866	.	G	A	4094.05	PASS	BaseQRankSum=3.506;DP=359;Dels=0.00;FS=9.012;HRun=0;HaplotypeScore=30.4060;MQ=60;MQ0=0;MQRankSum=-0.975;QD=11.40;ReadPosRankSum=-0.230;SB=-2185.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:181,178:359:99:4094,0,4619:60:99:0.496
chr1	45292867	.	T	.	.	PASS	END=45292955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:279:99:60
chr1	45292956	.	G	.	.	PASS	END=45292970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	45292971	.	A	.	.	PASS	END=45293035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	45293036	.	C	.	.	PASS	END=45293121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	45293122	.	T	.	.	PASS	END=45293169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	45293170	.	G	.	.	PASS	END=45293301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	45293302	.	C	.	.	PASS	END=45293330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	45293331	.	G	.	.	PASS	END=45293359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	45293360	.	A	.	.	PASS	END=45293396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	45293397	.	T	.	.	PASS	END=45293437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	45293464	.	C	.	.	PASS	END=45293502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	45293503	.	G	.	.	PASS	END=45293517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	45293518	.	A	G	1473.13	PASS	BaseQRankSum=1.025;DP=99;Dels=0.00;FS=3.083;HRun=1;HaplotypeScore=13.4221;MQ=60;MQ0=0;MQRankSum=0.268;QD=14.88;ReadPosRankSum=-0.589;SB=-419.29	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,54:99:99:1503,0,1170:60:99:0.551
chr1	45293519	.	G	.	.	PASS	END=45293587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	45293588	.	G	.	.	PASS	END=45293626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	45293627	.	T	.	.	PASS	END=45293746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	45293747	.	C	.	.	PASS	END=45293768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	45293769	.	C	.	.	PASS	END=45293788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	45293789	.	T	.	.	PASS	END=45293813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	45293814	.	C	.	.	PASS	END=45293888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	45293889	.	A	.	.	PASS	END=45293914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	45293917	.	G	.	.	PASS	END=45293936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	45293937	.	C	.	.	PASS	END=45293986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	45293987	.	C	.	.	PASS	END=45294016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	45294017	.	G	.	.	PASS	END=45294135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	45294136	.	G	.	.	PASS	END=45294155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	45294156	.	T	C	1888.84	PASS	BaseQRankSum=2.364;DP=181;Dels=0.00;FS=1.246;HRun=1;HaplotypeScore=30.6678;MQ=60;MQ0=0;MQRankSum=-0.442;QD=10.44;ReadPosRankSum=1.633;SB=-1003.33	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:109,72:181:99:1919,0,2530:60:99:0.398
chr1	45294157	.	G	.	.	PASS	END=45294286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	45294287	.	C	.	.	PASS	END=45294311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	45294312	.	A	.	.	PASS	END=45294320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	45294321	.	G	.	.	PASS	END=45294332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	45294333	.	A	.	.	PASS	END=45294354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	45294603	.	T	.	.	PASS	END=45294621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	45294622	.	C	.	.	PASS	END=45294663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	45294664	.	G	.	.	PASS	END=45294686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	45294687	.	G	.	.	PASS	END=45294769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	45294770	.	G	.	.	PASS	END=45294808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	45294809	.	G	.	.	PASS	END=45294880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	45294881	.	C	.	.	PASS	END=45294966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr1	45294967	.	C	.	.	PASS	END=45295028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	45295029	.	T	.	.	PASS	END=45295131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	45295132	.	A	.	.	PASS	END=45295193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	45295194	.	C	.	.	PASS	END=45295398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:261:99:60
chr1	45295399	.	T	.	.	PASS	END=45295439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	45295440	.	G	.	.	PASS	END=45295470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	45295471	.	C	.	.	PASS	END=45295484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	45295530	.	A	.	.	PASS	END=45295578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	45295579	.	A	.	.	PASS	END=45295701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	45295702	.	C	.	.	PASS	END=45295729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	45295730	.	T	.	.	PASS	END=45295753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	45296469	.	G	.	.	PASS	END=45296532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	45296533	.	T	.	.	PASS	END=45296689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	45296690	.	T	.	.	PASS	END=45296721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	45296722	.	G	.	.	PASS	END=45296740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	45296741	.	A	.	.	PASS	END=45296766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	45297327	.	T	.	.	PASS	END=45297350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	45297351	.	A	.	.	PASS	END=45297386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	45297387	.	G	.	.	PASS	END=45297426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	45297427	.	C	.	.	PASS	END=45297520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	45297596	.	C	.	.	PASS	END=45297638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	45297639	.	A	.	.	PASS	END=45297738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	45297739	.	A	.	.	PASS	END=45297767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	45297773	.	C	.	.	PASS	END=45297790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	45297791	.	C	.	.	PASS	END=45297875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	45297876	.	G	.	.	PASS	END=45297930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	45297931	.	T	.	.	PASS	END=45297947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	45297948	.	T	.	.	PASS	END=45297970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	45297971	.	T	.	.	PASS	END=45297991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	45297992	.	T	.	.	PASS	END=45298012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	45298013	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:31:60
chr1	45298014	.	C	.	.	PASS	END=45298028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	45298029	.	G	.	.	PASS	END=45298033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	45298034	.	A	.	.	PASS	END=45298035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr1	45298036	.	C	.	.	PASS	END=45298037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	45298038	.	G	.	.	PASS	END=45298047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	45298048	.	G	.	.	PASS	END=45298050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	45298051	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:18:60
chr1	45298052	.	C	.	.	PASS	END=45298057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	45298058	.	G	.	.	PASS	END=45298060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	45298061	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:60
chr1	45298062	.	C	.	.	PASS	END=45298064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	45307468	.	T	.	.	PASS	END=45307483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:60
chr1	45307484	.	T	.	.	PASS	END=45307497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	45307498	.	T	.	.	PASS	END=45307505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	45307506	.	G	A	1419.98	PASS	BaseQRankSum=1.407;DP=108;Dels=0.00;FS=5.692;HRun=0;HaplotypeScore=9.5644;MQ=60;MQ0=0;MQRankSum=-1.493;QD=13.15;ReadPosRankSum=0.363;SB=-202.26	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:53,55:108:99:1450,0,1410:60:99:0.509
chr1	45307507	.	T	.	.	PASS	END=45307523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	45307524	.	A	.	.	PASS	END=45307561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	45307562	.	G	.	.	PASS	END=45307622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	45307623	.	T	.	.	PASS	END=45307680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	45307681	.	A	.	.	PASS	END=45307722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	45307723	.	A	.	.	PASS	END=45307754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	45307755	.	T	.	.	PASS	END=45307762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	45308479	.	G	.	.	PASS	END=45308538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	45308539	.	T	.	.	PASS	END=45308546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	45308547	.	T	.	.	PASS	END=45308548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	45308549	.	C	.	.	PASS	END=45308564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	45308565	.	A	.	.	PASS	END=45308578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	45308579	.	T	.	.	PASS	END=45308587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	45308588	.	G	.	.	PASS	END=45308591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	45308592	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:3:60
chr1	45308593	.	C	.	.	PASS	END=45308598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	45308599	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	45308600	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	45308601	.	T	.	.	LowGQX	END=45308602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	45308603	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:60
chr1	45308604	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	45308605	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	45308606	.	C	.	.	LowGQX	END=45308607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	45308608	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	45308609	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	45308610	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:2:60
chr1	45308611	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	45308612	.	G	.	.	PASS	END=45308613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	45308614	.	G	.	.	LowGQX	END=45308616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	45308617	.	G	.	.	PASS	END=45308620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	45308621	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:1:60
chr1	45308622	.	G	.	.	PASS	END=45308623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:30:60
chr1	45308624	.	G	.	.	PASS	END=45308625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:33:60
chr1	45308626	.	G	.	.	PASS	END=45308628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	45308629	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:8:60
chr1	45308630	.	G	.	.	PASS	END=45308643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	45308644	.	T	.	.	PASS	END=45308647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr1	45308648	.	C	.	.	PASS	END=45308655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	45316572	.	A	.	.	PASS	END=45316575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	45316576	.	T	.	.	PASS	END=45316587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	45316588	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:60
chr1	45316589	.	A	.	.	PASS	END=45316592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	45316593	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:69:60
chr1	45316594	.	A	.	.	PASS	END=45316615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	45316616	.	T	.	.	PASS	END=45316629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	45316630	.	T	.	.	PASS	END=45316661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr1	45316662	.	A	.	.	PASS	END=45316726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:97:60
chr1	45323325	.	A	.	.	PASS	END=45323358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	45323359	.	A	.	.	PASS	END=45323423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	45323424	.	C	.	.	PASS	END=45323452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	45323453	.	C	.	.	PASS	END=45323461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	45323462	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:69:60
chr1	45323463	.	T	.	.	PASS	END=45323477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	45323478	.	T	.	.	PASS	END=45323485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	45323486	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:75:60
chr1	45323487	.	A	.	.	PASS	END=45323493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	45323494	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:69:60
chr1	45323495	.	C	.	.	PASS	END=45323510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	45323511	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:53:60
chr1	45323512	.	A	.	.	PASS	END=45323516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	45323517	.	T	.	.	PASS	END=45323530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	45340312	.	A	.	.	PASS	END=45340328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	45340329	.	T	.	.	PASS	END=45340338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	45340339	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:30:60
chr1	45340340	.	G	.	.	PASS	END=45340351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	45340352	.	T	.	.	PASS	END=45340423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	45340424	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr1	45340425	.	C	.	.	PASS	END=45340434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	45340435	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:50:60
chr1	45340436	.	G	.	.	PASS	END=45340449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	45340450	.	A	.	.	PASS	END=45340455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:72:60
chr1	45340456	.	C	.	.	PASS	END=45340458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	45340459	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:54:60
chr1	45340460	.	A	.	.	PASS	END=45340468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	45340469	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:42:60
chr1	45340470	.	T	.	.	PASS	END=45340482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	45340483	.	G	.	.	PASS	END=45340498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	45340499	.	C	.	.	PASS	END=45340519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	45340520	.	A	.	.	PASS	END=45340528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	45340529	.	A	.	.	PASS	END=45340532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	45340533	.	A	.	.	PASS	END=45340534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	45340535	.	C	.	.	PASS	END=45340540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	45340541	.	C	.	.	PASS	END=45340542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	45340543	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:12:60
chr1	45340544	.	C	.	.	PASS	END=45340549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	45341239	.	C	.	.	PASS	END=45341386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	45341387	.	T	.	.	PASS	END=45341413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	45341414	.	T	.	.	PASS	END=45341418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	45345439	.	C	.	.	PASS	END=45345445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	45345446	.	T	A	1205.53	PASS	BaseQRankSum=1.109;DP=114;Dels=0.00;FS=0.891;HRun=0;HaplotypeScore=11.4158;MQ=60;MQ0=0;MQRankSum=0.515;QD=10.57;ReadPosRankSum=0.474;SB=-278.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:70,44:114:99:1236,0,1690:60:99:0.386
chr1	45345447	.	T	.	.	PASS	END=45345483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	45345484	.	T	.	.	PASS	END=45345508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	45345509	.	T	.	.	PASS	END=45345565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	45345566	.	C	.	.	PASS	END=45345658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr1	45345659	.	T	.	.	PASS	END=45345698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	45345699	.	A	.	.	PASS	END=45345731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	45347233	.	C	.	.	PASS	END=45347252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	45347253	.	C	.	.	PASS	END=45347270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	45347271	.	C	.	.	PASS	END=45347390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	45347391	.	C	.	.	PASS	END=45347408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	45347409	.	G	.	.	PASS	END=45347431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	45347432	.	A	.	.	PASS	END=45347462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	45362976	.	A	.	.	PASS	END=45362991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	45362992	.	T	C	1904.45	PASS	BaseQRankSum=0.039;DP=146;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=12.3099;MQ=60;MQ0=0;MQRankSum=1.062;QD=13.04;ReadPosRankSum=-0.345;SB=-942.05	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:69,77:146:99:1934,0,1837:60:99:0.527
chr1	45362993	.	A	.	.	PASS	END=45363158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	45363159	.	C	.	.	PASS	END=45363167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	45392249	.	T	.	.	PASS	END=45392261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	45392262	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:76:66:60
chr1	45392263	.	A	.	.	PASS	END=45392351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	45392352	.	T	.	.	PASS	END=45392381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:84:60
chr1	45392382	.	T	.	.	PASS	END=45392398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	45392399	.	T	.	.	PASS	END=45392411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	45392412	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:33:60
chr1	45392413	.	T	.	.	PASS	END=45392419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	45392420	.	T	.	.	PASS	END=45392429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr1	45392430	.	A	.	.	PASS	END=45392448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	45392449	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:39:60
chr1	45392450	.	A	.	.	PASS	END=45392460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr1	45392461	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:3:60
chr1	45392462	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:72:60
chr1	45406270	.	C	.	.	LowGQX	END=45406438	GT	./.
chr1	45407127	.	A	.	.	PASS	END=45407210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	45407211	.	G	.	.	PASS	END=45407272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	45407273	.	A	.	.	PASS	END=45407308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	45407309	.	A	.	.	PASS	END=45407325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	45407326	.	C	.	.	PASS	END=45407354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	45407355	.	G	.	.	PASS	END=45407386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:79:60
chr1	45407387	.	C	.	.	PASS	END=45407388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	45443936	.	A	.	.	PASS	END=45443967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	45443968	.	T	.	.	PASS	END=45444036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	45444037	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:231:99:60
chr1	45444038	.	G	A	2814.03	PASS	BaseQRankSum=5.025;DP=234;Dels=0.00;FS=2.980;HRun=0;HaplotypeScore=11.4583;MQ=60;MQ0=0;MQRankSum=0.276;QD=12.03;ReadPosRankSum=0.143;SB=-1577.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:123,109:234:99:2844,0,3051:60:99:0.470
chr1	45444039	.	T	.	.	PASS	END=45444173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	45446642	.	C	.	.	PASS	END=45446646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	45446647	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:33:60
chr1	45446648	.	T	.	.	PASS	END=45446667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	45446668	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:36:60
chr1	45446669	.	A	.	.	PASS	END=45446679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	45446680	.	T	.	.	PASS	END=45446698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	45446699	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:68:60
chr1	45446700	.	T	.	.	PASS	END=45446704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	45446705	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:63:60
chr1	45446706	.	A	.	.	PASS	END=45446800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	45446801	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:71:60
chr1	45446802	.	T	.	.	PASS	END=45446825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	45446826	.	T	.	.	PASS	END=45446834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	45446835	.	T	.	.	PASS	END=45446867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	45446868	.	C	.	.	PASS	END=45446885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	45446886	.	C	.	.	PASS	END=45446887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:42:60
chr1	45446888	.	A	.	.	PASS	END=45446891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	45469157	.	G	.	.	LowGQX	END=45469256	GT	./.
chr1	45469327	.	A	.	.	LowGQX	END=45469338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45469339	.	A	.	.	LowGQX	.	GT	./.
chr1	45469340	.	C	.	.	LowGQX	END=45469345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45469346	.	A	.	.	LowGQX	.	GT	./.
chr1	45469347	.	T	.	.	LowGQX	END=45469378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45469379	.	G	.	.	LowGQX	.	GT	./.
chr1	45469380	.	G	.	.	LowGQX	END=45469383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45469384	.	A	.	.	LowGQX	.	GT	./.
chr1	45469385	.	C	.	.	LowGQX	END=45469391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45469392	.	A	.	.	LowGQX	.	GT	./.
chr1	45469393	.	G	.	.	LowGQX	END=45469419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45469420	.	C	.	.	LowGQX	.	GT	./.
chr1	45469421	.	A	.	.	LowGQX	END=45469422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45469423	.	T	.	.	LowGQX	END=45469426	GT	./.
chr1	45469518	.	A	.	.	LowGQX	END=45469578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45469579	.	T	.	.	LowGQX	.	GT	./.
chr1	45469580	.	G	.	.	LowGQX	END=45469601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45469602	.	C	.	.	LowGQX	END=45469617	GT	./.
chr1	45469720	.	T	.	.	LowGQX	END=45469819	GT	./.
chr1	45469918	.	A	.	.	LowGQX	END=45470043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45470044	.	T	.	.	LowGQX	END=45470051	GT	./.
chr1	45470270	.	A	.	.	LowGQX	END=45470284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45470285	.	T	.	.	LowGQX	END=45470480	GT	./.
chr1	45471461	.	C	.	.	LowGQX	END=45471560	GT	./.
chr1	45471667	.	A	.	.	LowGQX	END=45471790	GT	./.
chr1	45472362	.	A	.	.	LowGQX	END=45472469	GT	./.
chr1	45472606	.	C	.	.	LowGQX	END=45472705	GT	./.
chr1	45472868	.	A	.	.	LowGQX	END=45472967	GT	./.
chr1	45473083	.	A	.	.	LowGQX	END=45473124	GT	./.
chr1	45473125	.	G	.	.	LowGQX	END=45473129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45473130	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	45473131	.	G	.	.	LowGQX	END=45473152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45473153	.	G	.	.	LowGQX	.	GT	./.
chr1	45473154	.	G	.	.	LowGQX	END=45473162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45473163	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	45473164	.	T	.	.	LowGQX	END=45473169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45473170	.	C	.	.	LowGQX	END=45473269	GT	./.
chr1	45473910	.	A	.	.	LowGQX	END=45473952	GT	./.
chr1	45473953	.	G	.	.	LowGQX	END=45474061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45474206	.	A	.	.	LowGQX	END=45474209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45474210	.	C	.	.	LowGQX	END=45474322	GT	./.
chr1	45474323	.	G	.	.	LowGQX	END=45474356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45474357	.	A	.	.	LowGQX	END=45474358	GT	./.
chr1	45474359	.	C	.	.	LowGQX	END=45474375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45474808	.	A	.	.	LowGQX	END=45474907	GT	./.
chr1	45475039	.	A	.	.	LowGQX	END=45475131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45475132	.	T	.	.	LowGQX	END=45475156	GT	./.
chr1	45475238	.	A	.	.	LowGQX	END=45475291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45475292	.	A	.	.	LowGQX	.	GT	./.
chr1	45475293	.	C	.	.	LowGQX	END=45475309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45475310	.	A	.	.	LowGQX	.	GT	./.
chr1	45475311	.	G	.	.	LowGQX	END=45475313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45475314	.	A	.	.	LowGQX	.	GT	./.
chr1	45475315	.	T	.	.	LowGQX	END=45475344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45475345	.	T	.	.	LowGQX	.	GT	./.
chr1	45475346	.	T	.	.	LowGQX	END=45475348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45475349	.	A	.	.	LowGQX	.	GT	./.
chr1	45475350	.	C	.	.	LowGQX	END=45475357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45475656	.	A	.	.	LowGQX	END=45475795	GT	./.
chr1	45475870	.	C	.	.	LowGQX	END=45475969	GT	./.
chr1	45476186	.	G	.	.	LowGQX	END=45476380	GT	./.
chr1	45476559	.	A	.	.	LowGQX	END=45476931	GT	./.
chr1	45477804	.	T	.	.	PASS	END=45477822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	45477823	.	C	.	.	PASS	END=45477835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	45477836	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:75:60
chr1	45477837	.	C	.	.	PASS	END=45477865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	45477866	.	A	.	.	PASS	END=45477890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	45477891	.	A	.	.	PASS	END=45477938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	45477939	.	T	.	.	PASS	END=45477973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:81:60
chr1	45477974	.	A	.	.	PASS	END=45478004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:80:60
chr1	45478005	.	A	.	.	PASS	END=45478008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	45478528	.	G	.	.	PASS	END=45478547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	45478548	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:71:60
chr1	45478549	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:99:60
chr1	45478550	.	A	.	.	PASS	END=45478551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:72:60
chr1	45478552	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:99:60
chr1	45478553	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:69:60
chr1	45478554	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:54:18:60
chr1	45478555	.	C	.	.	PASS	END=45478559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:93:60
chr1	45478560	.	A	C	182.85	SB	BaseQRankSum=-3.466;DP=61;Dels=0.00;FS=57.257;HRun=5;HaplotypeScore=31.5582;MQ=60;MQ0=0;MQRankSum=-1.845;QD=3.00;ReadPosRankSum=-3.582;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,28:61:99:213,0,656:60:99:0.459
chr1	45478561	.	C	.	.	PASS	END=45478565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:96:60
chr1	45478566	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:43:27:60
chr1	45478567	.	C	.	.	PASS	END=45478596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	45478597	.	G	.	.	PASS	END=45478612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	45478613	.	T	.	.	PASS	END=45478624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	45478625	.	G	.	.	PASS	END=45478680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	45478681	.	T	.	.	PASS	END=45478742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	45478757	.	G	.	.	PASS	END=45478855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	45478856	.	C	.	.	PASS	END=45479018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	45479019	.	T	.	.	PASS	END=45479045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	45479046	.	C	.	.	PASS	END=45479099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	45479215	.	C	.	.	PASS	END=45479239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	45479240	.	A	.	.	PASS	END=45479272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	45479273	.	G	.	.	PASS	END=45479391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	45479392	.	T	.	.	PASS	END=45479421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	45479422	.	C	.	.	PASS	END=45479499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	45479500	.	A	.	.	PASS	END=45479514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	45479530	.	A	.	.	PASS	END=45479564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	45479565	.	T	.	.	PASS	END=45479593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	45479594	.	C	.	.	PASS	END=45479607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	45479608	.	G	.	.	PASS	END=45479650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	45479651	.	A	.	.	PASS	END=45479750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	45479751	.	T	.	.	PASS	END=45479771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	45479772	.	G	T	961.07	PASS	BaseQRankSum=0.971;DP=105;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=18.0340;MQ=60;MQ0=0;MQRankSum=1.282;QD=9.15;ReadPosRankSum=-0.145;SB=-525.86	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:63,40:105:99:991,0,1463:60:99:0.388
chr1	45479773	.	G	.	.	PASS	END=45479801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	45479802	.	A	.	.	PASS	END=45479814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	45480060	.	G	.	.	PASS	END=45480094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	45480095	.	A	.	.	PASS	END=45480111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	45480112	.	C	.	.	PASS	END=45480127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	45480128	.	G	.	.	PASS	END=45480175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	45480176	.	G	.	.	PASS	END=45480271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	45480272	.	G	.	.	PASS	END=45480299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	45480357	.	A	.	.	PASS	END=45480468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	45480469	.	T	.	.	PASS	END=45480514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	45480515	.	C	.	.	PASS	END=45480537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	45480538	.	T	.	.	PASS	END=45480540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	45480541	.	A	.	168.44	PASS	DP=87;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:68:87:99:60:99
chr1	45480542	.	G	.	.	PASS	END=45480543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	45480544	.	T	G	27.84	LowGQX;LowQD;SB	BaseQRankSum=-2.528;DP=89;Dels=0.00;FS=31.086;HRun=5;HaplotypeScore=103.8340;MQ=60;MQ0=0;MQRankSum=0.138;QD=0.31;ReadPosRankSum=3.580;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:71,18:89:57.82:58,0,1455:60:28:0.202
chr1	45480545	.	G	.	.	PASS	END=45480552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	45480553	.	T	.	153.53	PASS	DP=90;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:66:90:99:60:99
chr1	45480554	.	G	.	.	PASS	END=45480556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	45480557	.	T	.	162.41	PASS	DP=97;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:67:97:99:60:99
chr1	45480558	.	G	.	.	PASS	END=45480559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	45480561	.	G	.	.	PASS	END=45480604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:95:60
chr1	45480605	.	C	.	.	PASS	END=45480669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	45480670	.	G	.	.	PASS	END=45480704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	45480705	.	C	.	.	PASS	END=45480726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	45480727	.	C	.	.	PASS	END=45480729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	45480958	.	G	.	.	PASS	END=45480978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	45480979	.	C	.	.	PASS	END=45480985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	45480986	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:18:60
chr1	45480987	.	C	.	.	PASS	END=45480997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	45480998	.	T	.	.	PASS	END=45481002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	45481003	.	C	.	.	PASS	END=45481008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	45481009	.	G	.	.	PASS	END=45481014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	45481015	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:48:60
chr1	45481016	.	T	.	.	PASS	END=45481035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	45481036	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:45:60
chr1	45481037	.	T	.	.	PASS	END=45481042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	45481043	.	A	.	.	PASS	END=45481045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	45481046	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:57:60
chr1	45481047	.	C	.	.	PASS	END=45481049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	45481050	.	T	.	.	PASS	END=45481052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:87:60
chr1	45481053	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:51:60
chr1	45481054	.	C	.	.	PASS	END=45481070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	45481071	.	C	.	.	PASS	END=45481073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	45481074	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:60:60
chr1	45481075	.	C	.	.	PASS	END=45481079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	45481080	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:57:60
chr1	45481081	.	C	.	.	PASS	END=45481108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	45481109	.	A	.	.	PASS	END=45481134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	45481135	.	G	.	.	PASS	END=45481168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	45481169	.	G	.	.	PASS	END=45481177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	45481178	.	C	.	.	PASS	END=45481193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	45481194	.	C	.	.	PASS	END=45481293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	45481294	.	T	.	.	PASS	END=45481321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	45481322	.	A	.	.	PASS	END=45481338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	45481339	.	C	.	.	PASS	END=45481341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	45484124	.	T	.	.	LowGQX	END=45484307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45484308	.	G	.	.	LowGQX	END=45484990	GT	./.
chr1	45485729	.	G	.	.	LowGQX	END=45485737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45485738	.	C	.	.	LowGQX	.	GT	./.
chr1	45485739	.	C	.	.	LowGQX	END=45485754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45485755	.	G	.	.	LowGQX	.	GT	./.
chr1	45485756	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45485757	.	C	.	.	LowGQX	.	GT	./.
chr1	45485758	.	A	.	.	LowGQX	END=45485761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45485762	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	45485763	.	C	.	.	LowGQX	END=45485820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45485821	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	45485822	.	G	.	.	LowGQX	END=45485828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	45486295	.	A	.	.	LowGQX	END=45486462	GT	./.
chr1	45499982	.	A	.	.	LowGQX	END=45500143	GT	./.
chr1	45501358	.	A	.	.	LowGQX	END=45501390	GT	./.
chr1	45501391	.	G	.	.	LowGQX	END=45501497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45501709	.	A	.	.	LowGQX	END=45501931	GT	./.
chr1	45501932	.	G	.	.	LowGQX	END=45501973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45504606	.	A	.	.	LowGQX	END=45504679	GT	./.
chr1	45504680	.	G	.	.	LowGQX	END=45504685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45504686	.	G	.	.	LowGQX	.	GT	./.
chr1	45504687	.	G	.	.	LowGQX	END=45504697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45504698	.	C	.	.	LowGQX	.	GT	./.
chr1	45504699	.	C	.	.	LowGQX	END=45504701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45504702	.	G	.	.	LowGQX	.	GT	./.
chr1	45504703	.	C	.	.	LowGQX	END=45504705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45504706	.	T	.	.	LowGQX	.	GT	./.
chr1	45504707	.	C	.	.	LowGQX	END=45504719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45504720	.	G	C	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	45504721	.	G	.	.	LowGQX	END=45504738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45504739	.	A	.	.	LowGQX	.	GT	./.
chr1	45504740	.	A	.	.	LowGQX	END=45504745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45504746	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	45504747	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45506062	.	A	.	.	LowGQX	END=45506212	GT	./.
chr1	45508889	.	A	.	.	LowGQX	END=45509005	GT	./.
chr1	45509006	.	A	.	.	LowGQX	END=45509055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45509056	.	T	.	.	LowGQX	.	GT	./.
chr1	45509057	.	G	.	.	LowGQX	END=45509069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45516744	.	A	.	.	LowGQX	END=45516812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45516813	.	A	.	.	LowGQX	.	GT	./.
chr1	45516814	.	T	.	.	LowGQX	END=45516815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45516816	.	C	.	.	LowGQX	END=45516885	GT	./.
chr1	45516886	.	T	.	.	LowGQX	END=45516927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45524279	.	A	.	.	LowGQX	END=45524433	GT	./.
chr1	45525769	.	A	.	.	LowGQX	END=45525921	GT	./.
chr1	45553551	.	A	.	.	LowGQX	END=45553911	GT	./.
chr1	45671415	.	G	.	.	LowGQX	END=45671816	GT	./.
chr1	45671817	.	G	.	.	LowGQX	END=45671965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45671966	.	A	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	45671967	.	G	.	.	LowGQX	END=45672024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45792819	.	C	.	.	LowGQX	END=45793285	GT	./.
chr1	45793286	.	G	.	.	LowGQX	END=45793307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793308	.	A	.	.	LowGQX	.	GT	./.
chr1	45793309	.	C	.	.	LowGQX	END=45793312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793313	.	A	.	.	LowGQX	.	GT	./.
chr1	45793314	.	C	.	.	LowGQX	END=45793324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793325	.	A	.	.	LowGQX	.	GT	./.
chr1	45793326	.	C	.	.	LowGQX	END=45793333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793334	.	A	.	.	LowGQX	.	GT	./.
chr1	45793335	.	G	.	.	LowGQX	END=45793339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793340	.	C	.	.	LowGQX	.	GT	./.
chr1	45793341	.	C	.	.	LowGQX	END=45793342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793343	.	A	.	.	LowGQX	END=45793344	GT	./.
chr1	45793345	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793346	.	C	.	.	LowGQX	.	GT	./.
chr1	45793347	.	T	.	.	LowGQX	END=45793353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793354	.	C	.	.	LowGQX	.	GT	./.
chr1	45793355	.	T	.	.	LowGQX	END=45793357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793358	.	T	.	.	LowGQX	.	GT	./.
chr1	45793359	.	T	.	.	LowGQX	END=45793361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793362	.	A	.	.	LowGQX	.	GT	./.
chr1	45793363	.	C	.	.	LowGQX	END=45793374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793375	.	C	.	.	LowGQX	.	GT	./.
chr1	45793376	.	T	.	.	LowGQX	END=45793379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793380	.	G	.	.	LowGQX	.	GT	./.
chr1	45793381	.	C	.	.	LowGQX	END=45793383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793384	.	C	.	.	LowGQX	.	GT	./.
chr1	45793385	.	T	.	.	LowGQX	END=45793390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793391	.	C	.	.	LowGQX	.	GT	./.
chr1	45793392	.	T	.	.	LowGQX	END=45793393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793394	.	A	.	.	LowGQX	.	GT	./.
chr1	45793395	.	G	.	.	LowGQX	END=45793398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793399	.	A	.	.	LowGQX	.	GT	./.
chr1	45793400	.	G	.	.	LowGQX	END=45793414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793415	.	C	.	.	LowGQX	END=45793416	GT	./.
chr1	45793417	.	G	.	.	LowGQX	END=45793419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793420	.	C	.	.	LowGQX	END=45793422	GT	./.
chr1	45793423	.	C	.	.	LowGQX	END=45793436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793437	.	G	.	.	LowGQX	END=45793543	GT	./.
chr1	45793544	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793545	.	A	.	.	LowGQX	.	GT	./.
chr1	45793546	.	C	.	.	LowGQX	END=45793559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793560	.	T	.	.	LowGQX	.	GT	./.
chr1	45793561	.	C	.	.	LowGQX	END=45793562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793563	.	T	.	.	LowGQX	END=45793564	GT	./.
chr1	45793565	.	G	.	.	LowGQX	END=45793576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793577	.	G	.	.	LowGQX	END=45793578	GT	./.
chr1	45793579	.	G	.	.	LowGQX	END=45793586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793587	.	T	.	.	LowGQX	.	GT	./.
chr1	45793588	.	G	.	.	LowGQX	END=45793595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793596	.	T	.	.	LowGQX	.	GT	./.
chr1	45793597	.	G	.	.	LowGQX	END=45793600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793601	.	C	.	.	LowGQX	.	GT	./.
chr1	45793602	.	T	.	.	LowGQX	END=45793605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793606	.	T	.	.	LowGQX	.	GT	./.
chr1	45793607	.	A	.	.	LowGQX	END=45793619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793620	.	T	.	.	LowGQX	.	GT	./.
chr1	45793621	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793622	.	G	.	.	LowGQX	.	GT	./.
chr1	45793623	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793624	.	G	.	.	LowGQX	END=45793625	GT	./.
chr1	45793626	.	C	.	.	LowGQX	END=45793637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793638	.	T	.	.	LowGQX	.	GT	./.
chr1	45793639	.	G	.	.	LowGQX	END=45793648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793649	.	G	.	.	LowGQX	.	GT	./.
chr1	45793650	.	G	.	.	LowGQX	END=45793663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793664	.	G	.	.	LowGQX	.	GT	./.
chr1	45793665	.	C	.	.	LowGQX	END=45793692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45793693	.	A	.	.	LowGQX	END=45793938	GT	./.
chr1	45794927	.	A	.	.	PASS	END=45794951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	45794952	.	T	.	.	PASS	END=45794954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	45794955	.	G	.	.	PASS	END=45794956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	45794957	.	G	.	.	PASS	END=45794976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	45794977	.	G	.	.	PASS	END=45794984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	45794985	.	G	.	.	PASS	END=45794990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	45794991	.	C	.	.	PASS	END=45795001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	45795002	.	G	.	.	PASS	END=45795077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	45795078	.	C	.	.	PASS	END=45795134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:83:60
chr1	45795135	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:72:60
chr1	45795136	.	C	.	.	PASS	END=45795142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:87:60
chr1	45795143	.	T	.	.	PASS	END=45795154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	45795155	.	G	.	.	PASS	END=45795156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:54:60
chr1	45795157	.	G	.	.	PASS	END=45795160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	45796137	.	T	.	.	PASS	END=45796157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr1	45796158	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:38:60
chr1	45796159	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:87:60
chr1	45796160	.	A	.	.	PASS	END=45796165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:66:60
chr1	45796166	.	G	.	.	PASS	END=45796183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	45796184	.	T	.	.	PASS	END=45796268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:81:60
chr1	45796269	.	G	C	1439.03	PASS	DP=52;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=27.67;SB=-913.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,52:52:99:1472,108,0:60:99:1.000
chr1	45796270	.	C	.	.	PASS	END=45796280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	45796803	.	A	.	.	PASS	END=45796807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	45796808	.	A	.	.	PASS	END=45796830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	45796831	.	A	.	.	PASS	END=45796856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	45796857	.	T	.	.	PASS	END=45796914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	45796915	.	C	.	.	PASS	END=45796931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	45796932	.	C	.	.	PASS	END=45796995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	45796996	.	G	.	.	PASS	END=45797039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	45797040	.	G	.	.	PASS	END=45797279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:285:99:60
chr1	45797282	.	A	.	.	PASS	END=45797464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:265:99:60
chr1	45797465	.	T	.	.	PASS	END=45797570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	45797571	.	G	.	.	PASS	END=45797582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr1	45797644	.	C	.	.	PASS	END=45797706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	45797707	.	C	.	.	PASS	END=45797846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	45797847	.	T	.	.	PASS	END=45797895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	45797896	.	G	.	.	PASS	END=45798047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	45798048	.	A	.	.	PASS	END=45798153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	45798154	.	C	.	.	PASS	END=45798276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	45798277	.	G	.	.	PASS	END=45798408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	45798409	.	T	.	.	PASS	END=45798477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	45798478	.	C	.	.	PASS	END=45798554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	45798555	.	T	C	7394.07	PASS	BaseQRankSum=1.603;DP=243;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.5203;MQ=60;MQ0=0;MQRankSum=-1.117;QD=30.43;ReadPosRankSum=-1.703;SB=-3945.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,241:243:99:7394,560,0:60:99:0.996
chr1	45798556	.	G	.	.	PASS	END=45798618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr1	45798619	.	G	.	.	PASS	END=45798682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:265:99:60
chr1	45798718	.	C	.	.	PASS	END=45798843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	45798844	.	T	.	.	PASS	END=45798893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	45798906	.	G	.	.	PASS	END=45798958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	45798959	.	G	.	.	PASS	END=45799109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr1	45799110	.	T	.	.	PASS	END=45799199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	45799200	.	T	.	.	PASS	END=45799244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	45799245	.	C	.	.	PASS	END=45799272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	45799273	.	A	.	.	PASS	END=45799275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	45800012	.	G	.	.	PASS	END=45800035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	45800036	.	G	.	.	PASS	END=45800101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	45800102	.	C	.	.	PASS	END=45800155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	45800156	.	C	T	1098.49	PASS	BaseQRankSum=0.880;DP=78;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=8.5750;MQ=60;MQ0=0;MQRankSum=0.396;QD=14.08;ReadPosRankSum=-0.705;SB=-542.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,44:78:99:1128,0,777:60:99:0.571
chr1	45800157	.	G	.	.	PASS	END=45800194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	45800195	.	A	.	.	PASS	END=45800203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	45800204	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:57:60
chr1	45800205	.	A	.	.	PASS	END=45800234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	45803814	.	A	.	.	LowGQX	END=45803826	GT	./.
chr1	45803827	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803828	.	T	.	.	LowGQX	.	GT	./.
chr1	45803829	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803830	.	A	.	.	LowGQX	END=45803831	GT	./.
chr1	45803832	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803833	.	T	.	.	LowGQX	END=45803834	GT	./.
chr1	45803835	.	G	.	.	LowGQX	END=45803836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803837	.	G	.	.	LowGQX	.	GT	./.
chr1	45803838	.	A	.	.	LowGQX	END=45803841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803842	.	G	.	.	LowGQX	.	GT	./.
chr1	45803843	.	A	.	.	LowGQX	END=45803844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803845	.	G	.	.	LowGQX	.	GT	./.
chr1	45803846	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803847	.	T	.	.	LowGQX	.	GT	./.
chr1	45803848	.	C	.	.	LowGQX	END=45803851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803852	.	A	.	.	LowGQX	.	GT	./.
chr1	45803853	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803854	.	G	.	.	LowGQX	.	GT	./.
chr1	45803855	.	T	.	.	LowGQX	END=45803857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803858	.	C	.	.	LowGQX	.	GT	./.
chr1	45803859	.	T	.	.	LowGQX	END=45803863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803864	.	G	.	.	LowGQX	END=45803865	GT	./.
chr1	45803866	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803867	.	C	.	.	LowGQX	.	GT	./.
chr1	45803868	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803869	.	T	.	.	LowGQX	END=45803870	GT	./.
chr1	45803871	.	G	.	.	LowGQX	END=45803874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803875	.	G	.	.	LowGQX	END=45803876	GT	./.
chr1	45803877	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803878	.	T	.	.	LowGQX	.	GT	./.
chr1	45803879	.	T	.	.	LowGQX	END=45803880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803881	.	G	.	.	LowGQX	.	GT	./.
chr1	45803882	.	G	.	.	LowGQX	END=45803884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803885	.	G	.	.	LowGQX	.	GT	./.
chr1	45803886	.	C	.	.	LowGQX	END=45803888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803889	.	C	.	.	LowGQX	.	GT	./.
chr1	45803890	.	A	.	.	LowGQX	END=45803892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803893	.	C	.	.	LowGQX	.	GT	./.
chr1	45803894	.	T	.	.	LowGQX	END=45803899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803900	.	T	.	.	LowGQX	.	GT	./.
chr1	45803901	.	T	.	.	LowGQX	END=45803904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803905	.	A	.	.	LowGQX	END=45803906	GT	./.
chr1	45803907	.	G	.	.	LowGQX	END=45803909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803910	.	G	.	.	LowGQX	END=45803911	GT	./.
chr1	45803912	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45803913	.	C	.	.	LowGQX	.	GT	./.
chr1	45805479	.	C	.	.	LowGQX	END=45805488	GT	./.
chr1	45805489	.	C	.	.	LowGQX	END=45805491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45805492	.	C	.	.	LowGQX	.	GT	./.
chr1	45805493	.	T	.	.	LowGQX	END=45805494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45805495	.	G	.	.	LowGQX	.	GT	./.
chr1	45805496	.	G	.	.	LowGQX	END=45805502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45805503	.	T	.	.	LowGQX	.	GT	./.
chr1	45805504	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45805505	.	A	.	.	LowGQX	END=45805507	GT	./.
chr1	45805508	.	C	.	.	LowGQX	END=45805510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45805511	.	A	.	.	LowGQX	.	GT	./.
chr1	45805512	.	G	.	.	LowGQX	END=45805513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45805514	.	T	.	.	LowGQX	.	GT	./.
chr1	45805515	.	C	.	.	LowGQX	END=45805517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45805518	.	G	.	.	LowGQX	END=45805520	GT	./.
chr1	45805521	.	G	.	.	LowGQX	END=45805532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45805533	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	45805534	.	T	.	.	LowGQX	END=45805549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45805550	.	A	.	.	LowGQX	.	GT	./.
chr1	45805551	.	G	.	.	LowGQX	END=45805553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45805554	.	A	.	.	LowGQX	.	GT	./.
chr1	45805555	.	C	.	.	LowGQX	END=45805558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45805559	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	45805560	.	C	.	.	LowGQX	END=45805565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45805566	.	G	C	44.20	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=22.10;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:75,6,0:60:6:1.000
chr1	45805567	.	C	.	.	LowGQX	END=45805585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45805586	.	A	.	.	LowGQX	.	GT	./.
chr1	45805587	.	T	.	.	LowGQX	END=45805598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	45805599	.	A	.	.	LowGQX	END=45805600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	45805601	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	45805602	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	45805603	.	C	.	.	LowGQX	END=45805638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	45805833	.	C	.	.	PASS	END=45805846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	45805847	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:47:60
chr1	45805848	.	C	.	.	PASS	END=45805854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	45805855	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:48:60
chr1	45805856	.	A	.	.	PASS	END=45805859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	45805860	.	C	.	.	PASS	END=45805879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	45805880	.	G	.	.	PASS	END=45805896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	45805897	.	A	.	.	PASS	END=45805971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	45805972	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:76:60
chr1	45805973	.	G	.	.	PASS	END=45806002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	45806003	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:64:60
chr1	45806004	.	A	.	.	PASS	END=45806007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	45806008	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:69:60
chr1	45806009	.	C	.	.	PASS	END=45806010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	45806743	.	A	.	.	LowGQX	END=45806829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45806830	.	G	.	.	LowGQX	END=45806889	GT	./.
chr1	45806946	.	G	.	.	LowGQX	END=45807045	GT	./.
chr1	45807143	.	A	.	.	LowGQX	END=45807243	GT	./.
chr1	45807619	.	A	.	.	LowGQX	END=45807781	GT	./.
chr1	45808054	.	A	.	.	LowGQX	END=45808055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45808056	.	G	.	.	LowGQX	.	GT	./.
chr1	45808057	.	G	.	.	LowGQX	END=45808059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45808060	.	A	.	.	LowGQX	END=45808061	GT	./.
chr1	45808062	.	G	.	.	LowGQX	END=45808075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45808076	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	45808077	.	T	.	.	LowGQX	END=45808131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45808132	.	A	T	9.30	LowGQX	BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=3.10;ReadPosRankSum=0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr1	45808133	.	C	.	.	LowGQX	END=45808245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45808246	.	A	.	.	LowGQX	END=45808317	GT	./.
chr1	45808367	.	T	.	.	LowGQX	END=45808466	GT	./.
chr1	45808513	.	A	.	.	LowGQX	.	GT	./.
chr1	45808514	.	G	.	.	LowGQX	END=45808676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45808752	.	A	.	.	LowGQX	END=45808755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45808756	.	T	.	.	LowGQX	END=45809376	GT	./.
chr1	45810510	.	C	.	.	LowGQX	END=45811232	GT	./.
chr1	45811547	.	A	.	.	LowGQX	END=45811668	GT	./.
chr1	45812359	.	A	.	.	LowGQX	END=45812458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45812643	.	C	.	.	LowGQX	END=45812658	GT	./.
chr1	45812659	.	G	.	.	LowGQX	END=45812742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45813274	.	A	.	.	LowGQX	END=45813278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45813279	.	A	.	.	LowGQX	.	GT	./.
chr1	45813280	.	C	.	.	LowGQX	END=45813283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45813284	.	T	.	.	LowGQX	.	GT	./.
chr1	45813285	.	T	.	.	LowGQX	END=45813287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45813288	.	T	.	.	LowGQX	.	GT	./.
chr1	45813289	.	T	.	.	LowGQX	END=45813294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45813295	.	G	.	.	LowGQX	.	GT	./.
chr1	45813296	.	C	.	.	LowGQX	END=45813298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45813299	.	A	.	.	LowGQX	.	GT	./.
chr1	45813300	.	T	.	.	LowGQX	END=45813307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45813308	.	A	.	.	LowGQX	.	GT	./.
chr1	45813309	.	A	.	.	LowGQX	END=45813314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45813315	.	G	.	.	LowGQX	.	GT	./.
chr1	45813316	.	G	.	.	LowGQX	END=45813333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45813334	.	A	.	.	LowGQX	.	GT	./.
chr1	45813335	.	A	.	.	LowGQX	END=45813338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45813339	.	A	.	.	LowGQX	.	GT	./.
chr1	45813340	.	C	.	.	LowGQX	END=45813349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45813350	.	C	.	.	LowGQX	END=45813373	GT	./.
chr1	45813582	.	C	.	.	LowGQX	END=45813587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45813588	.	A	.	.	LowGQX	END=45813681	GT	./.
chr1	45820933	.	G	.	.	LowGQX	END=45821034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45821035	.	T	.	.	LowGQX	END=45821123	GT	./.
chr1	45851559	.	A	.	.	LowGQX	END=45851658	GT	./.
chr1	45864600	.	A	.	.	LowGQX	END=45864699	GT	./.
chr1	45879474	.	A	.	.	LowGQX	END=45879573	GT	./.
chr1	45887395	.	A	.	.	LowGQX	END=45887398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45887399	.	A	.	.	LowGQX	.	GT	./.
chr1	45887400	.	A	.	.	LowGQX	END=45887401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45887402	.	G	.	.	LowGQX	.	GT	./.
chr1	45887403	.	A	.	.	LowGQX	END=45887404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45887405	.	G	.	.	LowGQX	.	GT	./.
chr1	45887406	.	T	.	.	LowGQX	END=45887411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45887412	.	T	.	.	LowGQX	.	GT	./.
chr1	45887413	.	G	.	.	LowGQX	END=45887414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45887415	.	G	.	.	LowGQX	.	GT	./.
chr1	45887416	.	A	.	.	LowGQX	END=45887423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45887424	.	T	.	.	LowGQX	.	GT	./.
chr1	45887425	.	T	.	.	LowGQX	END=45887451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45887452	.	T	.	.	LowGQX	.	GT	./.
chr1	45887453	.	T	.	.	LowGQX	END=45887454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45887455	.	C	.	.	LowGQX	.	GT	./.
chr1	45887456	.	C	.	.	LowGQX	END=45887458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45887459	.	G	.	.	LowGQX	.	GT	./.
chr1	45887460	.	T	.	.	LowGQX	END=45887474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45887475	.	T	.	.	LowGQX	.	GT	./.
chr1	45887476	.	T	.	.	LowGQX	END=45887478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45887479	.	T	.	.	LowGQX	.	GT	./.
chr1	45887480	.	C	.	.	LowGQX	END=45887500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45887501	.	A	.	.	LowGQX	END=45887520	GT	./.
chr1	45923234	.	A	.	.	LowGQX	END=45923459	GT	./.
chr1	45960730	.	T	.	.	LowGQX	.	GT	./.
chr1	45960731	.	T	.	.	LowGQX	END=45960741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45960742	.	T	.	.	LowGQX	.	GT	./.
chr1	45960743	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45960744	.	G	.	.	LowGQX	.	GT	./.
chr1	45960745	.	G	.	.	LowGQX	END=45960746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45960747	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	45960748	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45960749	.	C	.	.	LowGQX	.	GT	./.
chr1	45960750	.	C	.	.	LowGQX	END=45960755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45960756	.	G	.	.	LowGQX	.	GT	./.
chr1	45960757	.	A	.	.	LowGQX	END=45960778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45960779	.	T	.	.	LowGQX	END=45960838	GT	./.
chr1	45961082	.	A	.	.	LowGQX	END=45961255	GT	./.
chr1	45962062	.	G	.	.	LowGQX	END=45962156	GT	./.
chr1	45962157	.	A	.	.	LowGQX	END=45962180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45962181	.	G	.	.	LowGQX	.	GT	./.
chr1	45962182	.	T	.	.	LowGQX	END=45962212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45962213	.	T	.	.	LowGQX	.	GT	./.
chr1	45962214	.	G	.	.	LowGQX	END=45962220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45962221	.	G	.	.	LowGQX	.	GT	./.
chr1	45962222	.	T	.	.	LowGQX	END=45962234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45962235	.	C	.	.	LowGQX	.	GT	./.
chr1	45962236	.	T	.	.	LowGQX	END=45962238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45962239	.	C	.	.	LowGQX	.	GT	./.
chr1	45962240	.	A	.	.	LowGQX	END=45962254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45962255	.	T	.	.	LowGQX	.	GT	./.
chr1	45962256	.	C	.	.	LowGQX	END=45962262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45962263	.	C	.	.	LowGQX	.	GT	./.
chr1	45962264	.	C	.	.	LowGQX	END=45962265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45962266	.	G	.	.	LowGQX	.	GT	./.
chr1	45962267	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45962268	.	T	.	.	LowGQX	END=45962270	GT	./.
chr1	45962271	.	T	.	.	LowGQX	END=45962272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45962273	.	C	.	.	LowGQX	.	GT	./.
chr1	45962274	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45962275	.	G	.	.	LowGQX	END=45962276	GT	./.
chr1	45962277	.	A	.	.	LowGQX	END=45962295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45962963	.	T	.	.	LowGQX	END=45963037	GT	./.
chr1	45963038	.	A	.	.	LowGQX	END=45963062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45965016	.	C	.	.	LowGQX	END=45965115	GT	./.
chr1	45965193	.	C	.	.	LowGQX	END=45965292	GT	./.
chr1	45965954	.	A	.	.	PASS	END=45965958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:66:60
chr1	45965959	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:87:60
chr1	45965960	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:49:60
chr1	45965961	.	C	.	.	PASS	END=45965975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:75:60
chr1	45965976	.	C	.	.	PASS	END=45966002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr1	45966003	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:45:60
chr1	45966004	.	T	.	.	PASS	END=45966055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:79:60
chr1	45966056	.	C	.	.	PASS	END=45966127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	45966128	.	T	.	.	PASS	END=45966136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr1	45972977	.	G	.	.	PASS	END=45972981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	45972982	.	G	.	.	PASS	END=45972996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	45972997	.	T	.	.	PASS	END=45973030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	45973031	.	G	.	.	PASS	END=45973047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	45973048	.	C	.	.	PASS	END=45973069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	45973070	.	C	.	.	PASS	END=45973089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	45973090	.	G	.	.	PASS	END=45973197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:60
chr1	45973198	.	C	.	.	PASS	END=45973220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	45973221	.	A	.	.	PASS	END=45973234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	45973235	.	C	.	.	PASS	END=45973263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	45973264	.	C	.	.	PASS	END=45973273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	45973833	.	T	.	.	PASS	END=45973852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	45973853	.	A	.	.	PASS	END=45973876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	45973877	.	G	.	.	PASS	END=45973918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	45973919	.	C	.	.	PASS	END=45973927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	45973928	.	G	A	2844.97	PASS	BaseQRankSum=1.555;DP=199;Dels=0.00;FS=3.549;HRun=0;HaplotypeScore=18.9384;MQ=60;MQ0=0;MQRankSum=-0.804;QD=14.30;ReadPosRankSum=-1.711;SB=-1471.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:78,119:199:99:2875,0,1863:60:99:0.604
chr1	45973929	.	C	.	.	PASS	END=45974022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	45974023	.	C	.	.	PASS	END=45974035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	45974036	.	G	.	.	PASS	END=45974071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	45974072	.	C	.	.	PASS	END=45974083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	45974084	.	T	.	.	PASS	END=45974087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	45974417	.	T	.	.	PASS	END=45974430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	45974431	.	A	.	.	PASS	END=45974432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	45974433	.	C	.	.	PASS	END=45974439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	45974440	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr1	45974441	.	C	.	.	LowGQX	END=45974442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:9:60
chr1	45974443	.	T	.	.	PASS	END=45974454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	45974455	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:45:60
chr1	45974456	.	C	.	.	PASS	END=45974458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	45974459	.	T	.	.	PASS	END=45974461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	45974462	.	C	.	.	PASS	END=45974477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	45974478	.	G	.	.	PASS	END=45974508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	45974509	.	G	.	.	PASS	END=45974513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	45974514	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:72:60
chr1	45974515	.	C	.	.	PASS	END=45974530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	45974531	.	C	.	.	PASS	END=45974563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	45974564	.	C	.	.	PASS	END=45974631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	45974632	.	C	.	.	PASS	END=45974677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	45974678	.	C	.	.	PASS	END=45974691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	45974692	.	G	.	.	PASS	END=45974722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	45974723	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:66:60
chr1	45974724	.	A	.	.	PASS	END=45974737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	45974738	.	T	.	.	PASS	END=45974743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	45974744	.	T	.	.	PASS	END=45974745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr1	45974746	.	G	.	.	PASS	END=45974748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	45974749	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:54:60
chr1	45974750	.	C	.	.	PASS	END=45974754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	45974755	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:30:60
chr1	45974756	.	T	.	.	PASS	END=45974761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	45974762	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:48:60
chr1	45974763	.	A	.	.	PASS	END=45974769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	45974770	.	T	.	54.07	LowGQX	DP=14;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:11:14:24.08:60:24
chr1	45974771	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	45974772	.	C	.	.	PASS	END=45974781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	45974782	.	G	.	.	PASS	END=45974783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	45974784	.	A	.	.	PASS	END=45974786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:39:60
chr1	45974787	.	T	.	.	PASS	END=45974794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	45974795	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	45974796	.	C	.	.	PASS	END=45974797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:60
chr1	45974798	.	A	.	.	PASS	END=45974803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	45974804	.	G	.	.	LowGQX	END=45974806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	45974807	.	C	.	.	PASS	END=45974808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	45974809	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:1:60
chr1	45974810	.	A	.	.	LowGQX	END=45974812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	45974813	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	45974814	.	A	.	.	LowGQX	END=45974815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	45974816	.	C	.	.	PASS	END=45974817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	45974818	.	T	.	.	LowGQX	END=45974819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	45974820	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	45974821	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	45974822	.	A	.	.	PASS	END=45974823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	45974824	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	45974825	.	C	.	.	PASS	END=45974828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	45974829	.	G	.	.	LowGQX	END=45974831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	45974832	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	45974833	.	A	.	.	LowGQX	END=45974845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	45974846	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	45974847	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:21:60
chr1	45974848	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	45974849	.	A	.	.	LowGQX	END=45974850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	45974851	.	C	.	.	PASS	END=45974855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	45974856	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	45974857	.	G	.	.	PASS	END=45974858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	45974859	.	T	.	.	LowGQX	END=45974878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	45974879	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	45974880	.	G	.	.	LowGQX	END=45974898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	45974899	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr1	45974900	.	T	.	.	LowGQX	END=45974908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	45974909	.	A	.	.	LowGQX	END=45974910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	45974911	.	T	.	.	LowGQX	END=45974912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	45974913	.	A	.	.	LowGQX	END=45974916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	45974917	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	45974918	.	G	.	.	LowGQX	END=45974932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	45974933	.	T	.	.	LowGQX	END=45974938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	45976994	.	C	.	.	LowGQX	END=45977093	GT	./.
chr1	45980177	.	A	.	.	LowGQX	END=45980238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45980239	.	A	.	.	LowGQX	END=45980241	GT	./.
chr1	45980242	.	G	.	.	LowGQX	END=45980311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	45980543	.	A	.	.	LowGQX	END=45980609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	45980610	.	T	.	.	LowGQX	END=45980669	GT	./.
chr1	45981294	.	A	.	.	LowGQX	END=45981481	GT	./.
chr1	45984558	.	C	.	.	LowGQX	END=45984717	GT	./.
chr1	46027459	.	A	.	.	LowGQX	END=46027481	GT	./.
chr1	46027482	.	G	.	.	LowGQX	END=46027558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46032239	.	A	.	.	LowGQX	END=46032248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46032249	.	A	.	.	LowGQX	END=46032362	GT	./.
chr1	46032539	.	A	.	.	LowGQX	END=46032696	GT	./.
chr1	46033652	.	A	.	.	LowGQX	END=46033661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46033662	.	A	.	.	LowGQX	END=46033851	GT	./.
chr1	46034155	.	A	.	.	LowGQX	END=46034358	GT	./.
chr1	46034586	.	T	.	.	LowGQX	END=46034685	GT	./.
chr1	46034809	.	C	.	.	LowGQX	END=46034908	GT	./.
chr1	46035546	.	T	.	.	LowGQX	END=46035576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46035577	.	A	.	.	LowGQX	END=46035645	GT	./.
chr1	46049799	.	T	.	.	LowGQX	END=46049898	GT	./.
chr1	46054252	.	C	.	.	LowGQX	END=46054428	GT	./.
chr1	46056869	.	T	.	.	LowGQX	END=46057022	GT	./.
chr1	46060347	.	T	.	.	LowGQX	END=46060352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46060353	.	A	.	.	LowGQX	.	GT	./.
chr1	46060354	.	T	.	.	LowGQX	END=46060382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46060383	.	G	.	.	LowGQX	.	GT	./.
chr1	46060384	.	T	.	.	LowGQX	END=46060388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46060389	.	C	.	.	LowGQX	.	GT	./.
chr1	46060390	.	A	.	.	LowGQX	END=46060421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46060422	.	C	.	.	LowGQX	END=46060446	GT	./.
chr1	46066043	.	C	.	.	LowGQX	END=46066142	GT	./.
chr1	46067925	.	A	.	.	LowGQX	END=46068039	GT	./.
chr1	46070599	.	T	.	.	LowGQX	END=46070698	GT	./.
chr1	46072152	.	A	.	.	LowGQX	END=46072265	GT	./.
chr1	46072935	.	A	.	.	LowGQX	END=46073867	GT	./.
chr1	46073868	.	G	.	.	LowGQX	END=46073872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46073873	.	A	.	.	LowGQX	.	GT	./.
chr1	46073874	.	G	.	.	LowGQX	END=46073971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46073972	.	G	.	.	LowGQX	.	GT	./.
chr1	46073973	.	A	.	.	LowGQX	END=46073989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46073990	.	A	.	.	LowGQX	.	GT	./.
chr1	46073991	.	C	.	.	LowGQX	END=46074023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46074024	.	C	.	.	LowGQX	.	GT	./.
chr1	46074025	.	A	.	.	LowGQX	END=46074068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46078831	.	T	.	.	LowGQX	END=46078853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46078854	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	46078855	.	G	.	.	LowGQX	END=46078883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46078884	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	46078885	.	G	.	.	LowGQX	END=46078930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46079761	.	A	.	.	LowGQX	END=46079860	GT	./.
chr1	46079952	.	T	.	.	LowGQX	END=46080051	GT	./.
chr1	46080683	.	A	.	.	LowGQX	END=46080875	GT	./.
chr1	46080975	.	A	.	.	LowGQX	END=46081145	GT	./.
chr1	46081988	.	T	.	.	LowGQX	END=46082064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46082065	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	46082066	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46082067	.	T	.	.	LowGQX	END=46082087	GT	./.
chr1	46082287	.	T	.	.	LowGQX	END=46082386	GT	./.
chr1	46083102	.	A	.	.	LowGQX	END=46083141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46083142	.	C	.	.	LowGQX	.	GT	./.
chr1	46083143	.	A	.	.	LowGQX	END=46083232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46083233	.	A	.	.	LowGQX	END=46083265	GT	./.
chr1	46083724	.	G	.	.	LowGQX	END=46083809	GT	./.
chr1	46083810	.	T	.	.	LowGQX	END=46083823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46085916	.	T	.	.	LowGQX	END=46085946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46085947	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	46085948	.	C	.	.	LowGQX	END=46085971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	46085972	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	46085973	.	A	.	.	LowGQX	END=46086026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46086027	.	C	.	.	LowGQX	.	GT	./.
chr1	46086028	.	T	.	.	LowGQX	END=46086054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46086055	.	G	.	.	LowGQX	.	GT	./.
chr1	46086056	.	C	.	.	LowGQX	END=46086068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46086069	.	T	.	.	LowGQX	END=46086105	GT	./.
chr1	46086317	.	A	.	.	LowGQX	END=46086415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46086416	.	A	.	.	LowGQX	END=46086505	GT	./.
chr1	46086574	.	C	.	.	LowGQX	END=46086775	GT	./.
chr1	46086776	.	G	.	.	LowGQX	END=46086785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46086952	.	C	.	.	LowGQX	END=46086976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46086977	.	A	.	.	LowGQX	.	GT	./.
chr1	46086978	.	G	.	.	LowGQX	END=46086984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46086985	.	A	.	.	LowGQX	.	GT	./.
chr1	46086986	.	C	.	.	LowGQX	END=46087005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46087006	.	A	.	.	LowGQX	.	GT	./.
chr1	46087007	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46087008	.	C	.	.	LowGQX	.	GT	./.
chr1	46087009	.	A	.	.	LowGQX	END=46087011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46087012	.	A	.	.	LowGQX	.	GT	./.
chr1	46087013	.	G	.	.	LowGQX	END=46087021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46087022	.	A	.	.	LowGQX	.	GT	./.
chr1	46087023	.	G	.	.	LowGQX	END=46087040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46087041	.	A	.	.	LowGQX	.	GT	./.
chr1	46087042	.	C	.	.	LowGQX	END=46087049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46087050	.	T	.	.	LowGQX	.	GT	./.
chr1	46087051	.	C	.	.	LowGQX	END=46087055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46087056	.	C	.	.	LowGQX	.	GT	./.
chr1	46087057	.	T	.	.	LowGQX	END=46087059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46087060	.	A	.	.	LowGQX	END=46087061	GT	./.
chr1	46087062	.	C	.	.	LowGQX	END=46087068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46087069	.	A	.	.	LowGQX	.	GT	./.
chr1	46087070	.	T	.	.	LowGQX	END=46087077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46087078	.	C	.	.	LowGQX	.	GT	./.
chr1	46087079	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46087080	.	A	.	.	LowGQX	.	GT	./.
chr1	46087081	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46087082	.	C	.	.	LowGQX	END=46087088	GT	./.
chr1	46087089	.	T	.	.	LowGQX	END=46087090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46087091	.	A	.	.	LowGQX	.	GT	./.
chr1	46087092	.	G	.	.	LowGQX	END=46087156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46087309	.	C	.	.	LowGQX	END=46087408	GT	./.
chr1	46087548	.	C	.	.	LowGQX	END=46087715	GT	./.
chr1	46087862	.	C	.	.	LowGQX	END=46088020	GT	./.
chr1	46088220	.	C	.	.	LowGQX	END=46088264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46088265	.	A	.	.	LowGQX	.	GT	./.
chr1	46088266	.	C	.	.	LowGQX	END=46088277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46088278	.	A	.	.	LowGQX	.	GT	./.
chr1	46088279	.	T	.	.	LowGQX	END=46088339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46088415	.	G	.	.	LowGQX	END=46088448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46088449	.	G	.	.	LowGQX	.	GT	./.
chr1	46088450	.	T	.	.	LowGQX	END=46088472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46088473	.	A	.	.	LowGQX	.	GT	./.
chr1	46088474	.	A	.	.	LowGQX	END=46088514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46088626	.	C	.	.	LowGQX	END=46088654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46088655	.	G	.	.	LowGQX	END=46088789	GT	./.
chr1	46088888	.	C	.	.	LowGQX	END=46089111	GT	./.
chr1	46089227	.	A	.	.	LowGQX	END=46089326	GT	./.
chr1	46089407	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46089408	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	46089409	.	G	.	.	LowGQX	END=46089538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46089539	.	T	.	.	LowGQX	.	GT	./.
chr1	46089540	.	C	.	.	LowGQX	END=46089546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46089547	.	G	.	.	LowGQX	END=46089581	GT	./.
chr1	46093926	.	G	.	.	LowGQX	END=46094082	GT	./.
chr1	46095246	.	A	.	.	LowGQX	END=46095352	GT	./.
chr1	46096152	.	A	.	.	LowGQX	END=46096280	GT	./.
chr1	46099159	.	A	.	.	LowGQX	END=46099298	GT	./.
chr1	46099299	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46099300	.	G	.	.	LowGQX	END=46099302	GT	./.
chr1	46099303	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46099304	.	T	.	.	LowGQX	END=46099305	GT	./.
chr1	46099306	.	G	.	.	LowGQX	END=46099308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46099309	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	46099310	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	46099311	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	46099312	.	G	.	.	LowGQX	.	GT	./.
chr1	46099313	.	A	.	.	LowGQX	END=46099314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46099315	.	G	.	.	LowGQX	.	GT	./.
chr1	46099316	.	G	.	.	LowGQX	END=46099321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46099766	.	A	.	.	LowGQX	END=46099910	GT	./.
chr1	46105880	.	A	.	.	LowGQX	END=46105924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46105925	.	A	.	.	LowGQX	.	GT	./.
chr1	46105926	.	C	.	.	LowGQX	END=46105981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	46105982	.	G	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:4:3.01:60:3
chr1	46105983	.	T	.	.	LowGQX	END=46106077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46108086	.	A	.	.	LowGQX	END=46108185	GT	./.
chr1	46120213	.	A	.	.	LowGQX	END=46120503	GT	./.
chr1	46120820	.	T	.	.	LowGQX	END=46120993	GT	./.
chr1	46124680	.	A	.	.	LowGQX	END=46124757	GT	./.
chr1	46124758	.	A	.	.	LowGQX	END=46124779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46156712	.	C	.	.	LowGQX	END=46156811	GT	./.
chr1	46158874	.	A	.	.	LowGQX	END=46159390	GT	./.
chr1	46159391	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159392	.	G	.	.	LowGQX	.	GT	./.
chr1	46159393	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159394	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	46159395	.	A	.	.	LowGQX	END=46159406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159407	.	G	.	.	LowGQX	END=46159408	GT	./.
chr1	46159409	.	T	.	.	LowGQX	END=46159413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159414	.	G	.	.	LowGQX	END=46159416	GT	./.
chr1	46159417	.	T	.	.	LowGQX	END=46159418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159419	.	G	.	.	LowGQX	.	GT	./.
chr1	46159420	.	C	.	.	LowGQX	END=46159423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159424	.	C	.	.	LowGQX	.	GT	./.
chr1	46159425	.	C	.	.	LowGQX	END=46159426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159427	.	C	.	.	LowGQX	END=46159428	GT	./.
chr1	46159429	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159430	.	T	.	.	LowGQX	.	GT	./.
chr1	46159431	.	G	.	.	LowGQX	END=46159432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159433	.	A	.	.	LowGQX	END=46159434	GT	./.
chr1	46159435	.	T	.	.	LowGQX	END=46159441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159442	.	C	.	.	LowGQX	END=46159443	GT	./.
chr1	46159444	.	T	.	.	LowGQX	END=46159448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159449	.	C	.	.	LowGQX	.	GT	./.
chr1	46159450	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159451	.	T	.	.	LowGQX	.	GT	./.
chr1	46159452	.	T	.	.	LowGQX	END=46159454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159455	.	C	.	.	LowGQX	.	GT	./.
chr1	46159456	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159457	.	C	.	.	LowGQX	.	GT	./.
chr1	46159458	.	A	.	.	LowGQX	END=46159459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159460	.	C	.	.	LowGQX	END=46159463	GT	./.
chr1	46159464	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159465	.	T	.	.	LowGQX	.	GT	./.
chr1	46159466	.	T	.	.	LowGQX	END=46159467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159468	.	A	.	.	LowGQX	.	GT	./.
chr1	46159469	.	A	.	.	LowGQX	END=46159484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159485	.	G	.	.	LowGQX	.	GT	./.
chr1	46159486	.	T	.	.	LowGQX	END=46159487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159488	.	A	.	.	LowGQX	.	GT	./.
chr1	46159489	.	C	.	.	LowGQX	END=46159495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159496	.	G	.	.	LowGQX	.	GT	./.
chr1	46159497	.	G	.	.	LowGQX	END=46159502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159503	.	T	.	.	LowGQX	.	GT	./.
chr1	46159504	.	T	.	.	LowGQX	END=46159506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159507	.	C	.	.	LowGQX	.	GT	./.
chr1	46159508	.	A	.	.	LowGQX	END=46159509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159510	.	T	.	.	LowGQX	.	GT	./.
chr1	46159511	.	T	.	.	LowGQX	END=46159513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159514	.	A	.	.	LowGQX	.	GT	./.
chr1	46159515	.	A	.	.	LowGQX	END=46159523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159524	.	G	.	.	LowGQX	.	GT	./.
chr1	46159525	.	T	.	.	LowGQX	END=46159526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159527	.	G	.	.	LowGQX	.	GT	./.
chr1	46159528	.	T	.	.	LowGQX	END=46159533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46159534	.	G	.	.	LowGQX	.	GT	./.
chr1	46159535	.	T	.	.	LowGQX	END=46159536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46159537	.	G	.	.	LowGQX	.	GT	./.
chr1	46159538	.	T	.	.	LowGQX	END=46159539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46159540	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	46159541	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46159542	.	C	.	.	LowGQX	END=46159543	GT	./.
chr1	46159544	.	A	.	.	LowGQX	END=46159551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159552	.	G	.	.	LowGQX	.	GT	./.
chr1	46159553	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159554	.	C	.	.	LowGQX	.	GT	./.
chr1	46159555	.	A	.	.	LowGQX	END=46159558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159559	.	G	.	.	LowGQX	END=46159560	GT	./.
chr1	46159561	.	G	.	.	LowGQX	END=46159562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159563	.	C	.	.	LowGQX	END=46159564	GT	./.
chr1	46159565	.	T	.	.	LowGQX	END=46159568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159569	.	C	.	.	LowGQX	.	GT	./.
chr1	46159570	.	A	.	.	LowGQX	END=46159576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46159577	.	A	.	.	LowGQX	END=46159578	GT	./.
chr1	46159579	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46160029	.	T	.	.	LowGQX	END=46160188	GT	./.
chr1	46165636	.	T	.	.	LowGQX	END=46165864	GT	./.
chr1	46179916	.	A	.	.	LowGQX	END=46180020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46180021	.	G	T	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	46180022	.	C	.	.	LowGQX	END=46180053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46180054	.	C	.	.	LowGQX	END=46180140	GT	./.
chr1	46182565	.	A	.	.	LowGQX	END=46182734	GT	./.
chr1	46184833	.	A	.	.	LowGQX	END=46184842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46184843	.	T	.	.	LowGQX	.	GT	./.
chr1	46184844	.	T	.	.	LowGQX	END=46184847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46184848	.	T	.	.	LowGQX	.	GT	./.
chr1	46184849	.	A	.	.	LowGQX	END=46184850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46184851	.	C	.	.	LowGQX	.	GT	./.
chr1	46184852	.	T	.	.	LowGQX	END=46184865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46184866	.	C	.	.	LowGQX	.	GT	./.
chr1	46184867	.	A	.	.	LowGQX	END=46184868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46184869	.	A	.	.	LowGQX	.	GT	./.
chr1	46184870	.	A	.	.	LowGQX	END=46184874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46184875	.	C	.	.	LowGQX	.	GT	./.
chr1	46184876	.	C	.	.	LowGQX	END=46184890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46184891	.	C	.	.	LowGQX	.	GT	./.
chr1	46184892	.	C	.	.	LowGQX	END=46184898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46184899	.	A	.	.	LowGQX	.	GT	./.
chr1	46184900	.	C	.	.	LowGQX	END=46184902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46184903	.	A	.	.	LowGQX	.	GT	./.
chr1	46184904	.	C	.	.	LowGQX	END=46184909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46184910	.	C	.	.	LowGQX	.	GT	./.
chr1	46184911	.	C	.	.	LowGQX	END=46184913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46184914	.	A	.	.	LowGQX	END=46185014	GT	./.
chr1	46193301	.	A	.	.	LowGQX	END=46193472	GT	./.
chr1	46195244	.	A	.	.	LowGQX	END=46195443	GT	./.
chr1	46206571	.	A	.	.	LowGQX	END=46207006	GT	./.
chr1	46211790	.	A	.	.	LowGQX	END=46212085	GT	./.
chr1	46269555	.	C	.	.	LowGQX	END=46269746	GT	./.
chr1	46290103	.	A	.	.	LowGQX	END=46290254	GT	./.
chr1	46295109	.	A	.	.	LowGQX	END=46295255	GT	./.
chr1	46330742	.	G	.	.	LowGQX	END=46330841	GT	./.
chr1	46348002	.	C	.	.	LowGQX	END=46348101	GT	./.
chr1	46379477	.	G	.	.	LowGQX	END=46379576	GT	./.
chr1	46383011	.	A	.	.	LowGQX	END=46383205	GT	./.
chr1	46425054	.	G	.	.	LowGQX	END=46425104	GT	./.
chr1	46425105	.	C	.	.	LowGQX	END=46425153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46463384	.	T	.	.	LowGQX	END=46463483	GT	./.
chr1	46466591	.	T	.	.	LowGQX	END=46466665	GT	./.
chr1	46466666	.	A	.	.	LowGQX	END=46466690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46468467	.	T	.	.	LowGQX	END=46468566	GT	./.
chr1	46471911	.	A	.	.	LowGQX	END=46472069	GT	./.
chr1	46473956	.	T	.	.	LowGQX	END=46474055	GT	./.
chr1	46476400	.	A	.	.	LowGQX	END=46476613	GT	./.
chr1	46485266	.	A	.	.	LowGQX	END=46485267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46485268	.	G	.	.	LowGQX	.	GT	./.
chr1	46485269	.	C	.	.	LowGQX	END=46485272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46485273	.	T	.	.	LowGQX	.	GT	./.
chr1	46485274	.	G	.	.	LowGQX	END=46485305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46485306	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	46485307	.	A	.	.	LowGQX	END=46485316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46485317	.	T	.	.	LowGQX	.	GT	./.
chr1	46485318	.	G	.	.	LowGQX	END=46485325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46485326	.	T	.	.	LowGQX	.	GT	./.
chr1	46485327	.	G	.	.	LowGQX	END=46485345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46485346	.	C	.	.	LowGQX	.	GT	./.
chr1	46485347	.	C	.	.	LowGQX	END=46485350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46485351	.	A	.	.	LowGQX	.	GT	./.
chr1	46485352	.	C	.	.	LowGQX	END=46485364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46485365	.	G	.	.	LowGQX	.	GT	./.
chr1	46485366	.	C	.	.	LowGQX	END=46485371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46487620	.	A	.	.	LowGQX	END=46487756	GT	./.
chr1	46488563	.	C	.	.	LowGQX	END=46488662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46488898	.	C	.	.	LowGQX	END=46488997	GT	./.
chr1	46489442	.	A	.	.	LowGQX	END=46489575	GT	./.
chr1	46489576	.	G	.	.	LowGQX	END=46489582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46489583	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	46489584	.	T	.	.	LowGQX	END=46489699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46491347	.	A	.	.	LowGQX	END=46491489	GT	./.
chr1	46493401	.	A	.	.	LowGQX	END=46493421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46493422	.	G	.	.	LowGQX	.	GT	./.
chr1	46493423	.	G	.	.	LowGQX	END=46493424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46493425	.	C	.	.	LowGQX	END=46493537	GT	./.
chr1	46494408	.	A	.	.	LowGQX	END=46494433	GT	./.
chr1	46494434	.	G	.	.	LowGQX	END=46494436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46494437	.	C	.	.	LowGQX	.	GT	./.
chr1	46494438	.	A	.	.	LowGQX	END=46494442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46494443	.	T	.	.	LowGQX	.	GT	./.
chr1	46494444	.	G	.	.	LowGQX	END=46494454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46494455	.	G	.	.	LowGQX	.	GT	./.
chr1	46494456	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46494457	.	A	.	.	LowGQX	.	GT	./.
chr1	46494458	.	T	.	.	LowGQX	END=46494473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46494474	.	T	.	.	LowGQX	.	GT	./.
chr1	46494475	.	G	.	.	LowGQX	END=46494479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46494480	.	T	.	.	LowGQX	.	GT	./.
chr1	46494481	.	G	.	.	LowGQX	END=46494503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46494504	.	T	.	.	LowGQX	.	GT	./.
chr1	46494505	.	G	.	.	LowGQX	END=46494518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46494519	.	T	.	.	LowGQX	.	GT	./.
chr1	46494520	.	G	.	.	LowGQX	END=46494545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46494546	.	T	.	.	LowGQX	.	GT	./.
chr1	46494547	.	G	.	.	LowGQX	END=46494550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46494551	.	T	.	.	LowGQX	.	GT	./.
chr1	46494552	.	G	.	.	LowGQX	END=46494554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46494555	.	T	.	.	LowGQX	.	GT	./.
chr1	46494556	.	C	.	.	LowGQX	END=46494581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46494582	.	A	.	.	LowGQX	END=46494607	GT	./.
chr1	46495136	.	A	.	.	LowGQX	END=46495139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495140	.	G	.	.	LowGQX	END=46495141	GT	./.
chr1	46495142	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495143	.	A	.	.	LowGQX	.	GT	./.
chr1	46495144	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495145	.	T	.	.	LowGQX	.	GT	./.
chr1	46495146	.	G	.	.	LowGQX	END=46495149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495150	.	G	.	.	LowGQX	.	GT	./.
chr1	46495151	.	G	.	.	LowGQX	END=46495155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495156	.	A	.	.	LowGQX	.	GT	./.
chr1	46495157	.	G	.	.	LowGQX	END=46495160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495161	.	G	.	.	LowGQX	.	GT	./.
chr1	46495162	.	A	.	.	LowGQX	END=46495168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495169	.	A	.	.	LowGQX	END=46495170	GT	./.
chr1	46495171	.	T	.	.	LowGQX	END=46495172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495173	.	C	.	.	LowGQX	.	GT	./.
chr1	46495174	.	C	.	.	LowGQX	END=46495179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495180	.	A	.	.	LowGQX	.	GT	./.
chr1	46495181	.	C	.	.	LowGQX	END=46495183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495184	.	C	.	.	LowGQX	.	GT	./.
chr1	46495185	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495186	.	A	.	.	LowGQX	.	GT	./.
chr1	46495187	.	G	.	.	LowGQX	END=46495188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495189	.	A	.	.	LowGQX	.	GT	./.
chr1	46495190	.	C	.	.	LowGQX	END=46495197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495198	.	C	.	.	LowGQX	END=46495199	GT	./.
chr1	46495200	.	A	.	.	LowGQX	END=46495201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495202	.	A	.	.	LowGQX	.	GT	./.
chr1	46495203	.	C	.	.	LowGQX	END=46495205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495206	.	C	.	.	LowGQX	.	GT	./.
chr1	46495207	.	T	.	.	LowGQX	END=46495208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495209	.	C	.	.	LowGQX	END=46495210	GT	./.
chr1	46495211	.	C	.	.	LowGQX	END=46495214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495215	.	A	.	.	LowGQX	END=46495216	GT	./.
chr1	46495217	.	C	.	.	LowGQX	END=46495223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495224	.	G	.	.	LowGQX	.	GT	./.
chr1	46495225	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495226	.	G	.	.	LowGQX	END=46495227	GT	./.
chr1	46495228	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495229	.	A	.	.	LowGQX	.	GT	./.
chr1	46495230	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495231	.	T	.	.	LowGQX	.	GT	./.
chr1	46495232	.	T	.	.	LowGQX	END=46495235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46495236	.	A	.	.	LowGQX	END=46495241	GT	./.
chr1	46495501	.	A	.	.	LowGQX	END=46495627	GT	./.
chr1	46495799	.	A	.	.	LowGQX	END=46495912	GT	./.
chr1	46496247	.	G	.	.	LowGQX	END=46496426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46496427	.	C	.	.	LowGQX	.	GT	./.
chr1	46496428	.	T	.	.	LowGQX	END=46496429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46496430	.	A	.	.	LowGQX	.	GT	./.
chr1	46496431	.	G	.	.	LowGQX	END=46496434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46496435	.	T	.	.	LowGQX	.	GT	./.
chr1	46496676	.	T	.	.	LowGQX	END=46496856	GT	./.
chr1	46496857	.	C	.	.	LowGQX	END=46496894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46496895	.	A	.	.	LowGQX	.	GT	./.
chr1	46496896	.	C	.	.	LowGQX	END=46496964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46497061	.	A	.	.	LowGQX	END=46497145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46497146	.	G	.	.	LowGQX	END=46497259	GT	./.
chr1	46497848	.	A	.	.	LowGQX	END=46497969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46497970	.	C	.	.	LowGQX	END=46498078	GT	./.
chr1	46498266	.	A	.	.	LowGQX	END=46498345	GT	./.
chr1	46498346	.	G	.	.	LowGQX	END=46498374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46498375	.	A	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	46498376	.	G	.	.	LowGQX	END=46498392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46499472	.	A	.	.	LowGQX	END=46499612	GT	./.
chr1	46499743	.	A	.	.	LowGQX	END=46499940	GT	./.
chr1	46500208	.	A	.	.	LowGQX	END=46500331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46500332	.	C	.	.	LowGQX	END=46501408	GT	./.
chr1	46501409	.	A	.	.	LowGQX	END=46501423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46501424	.	A	.	.	LowGQX	.	GT	./.
chr1	46501425	.	A	.	.	LowGQX	END=46501428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46501429	.	C	.	.	LowGQX	.	GT	./.
chr1	46501430	.	C	.	.	LowGQX	END=46501432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46501433	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	46501434	.	C	.	.	LowGQX	END=46501490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46501491	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	46501492	.	T	.	.	LowGQX	END=46501495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46501496	.	G	.	.	LowGQX	.	GT	./.
chr1	46501497	.	A	.	.	LowGQX	END=46501515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46501516	.	G	.	.	LowGQX	.	GT	./.
chr1	46501517	.	C	.	.	LowGQX	END=46501534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46501535	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	46501536	.	C	.	.	LowGQX	END=46501541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46501542	.	C	.	.	LowGQX	END=46501740	GT	./.
chr1	46509343	.	C	.	.	LowGQX	END=46509357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46509358	.	G	.	.	LowGQX	.	GT	./.
chr1	46509359	.	A	.	.	LowGQX	END=46509520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46509521	.	A	.	.	LowGQX	END=46509545	GT	./.
chr1	46511558	.	T	.	.	LowGQX	END=46511762	GT	./.
chr1	46512211	.	G	.	.	LowGQX	END=46512310	GT	./.
chr1	46521465	.	A	.	.	LowGQX	END=46521645	GT	./.
chr1	46527559	.	T	.	.	LowGQX	END=46527561	GT	./.
chr1	46527562	.	T	.	.	LowGQX	END=46527566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527567	.	C	.	.	LowGQX	.	GT	./.
chr1	46527568	.	A	.	.	LowGQX	END=46527570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527571	.	G	.	.	LowGQX	END=46527572	GT	./.
chr1	46527573	.	T	.	.	LowGQX	END=46527575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527576	.	C	.	.	LowGQX	END=46527577	GT	./.
chr1	46527578	.	T	.	.	LowGQX	END=46527585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527586	.	A	.	.	LowGQX	.	GT	./.
chr1	46527587	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527588	.	T	.	.	LowGQX	.	GT	./.
chr1	46527589	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527590	.	A	.	.	LowGQX	.	GT	./.
chr1	46527591	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527592	.	T	.	.	LowGQX	END=46527593	GT	./.
chr1	46527594	.	G	.	.	LowGQX	END=46527595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527596	.	C	.	.	LowGQX	.	GT	./.
chr1	46527597	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527598	.	T	.	.	LowGQX	.	GT	./.
chr1	46527599	.	A	.	.	LowGQX	END=46527600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527601	.	C	.	.	LowGQX	.	GT	./.
chr1	46527602	.	G	.	.	LowGQX	END=46527603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527604	.	T	.	.	LowGQX	.	GT	./.
chr1	46527605	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527606	.	A	.	.	LowGQX	.	GT	./.
chr1	46527607	.	A	.	.	LowGQX	END=46527610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527611	.	C	.	.	LowGQX	.	GT	./.
chr1	46527612	.	C	.	.	LowGQX	END=46527617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527618	.	A	.	.	LowGQX	END=46527619	GT	./.
chr1	46527620	.	T	.	.	LowGQX	END=46527624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527625	.	T	.	.	LowGQX	.	GT	./.
chr1	46527626	.	C	.	.	LowGQX	END=46527630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527631	.	C	.	.	LowGQX	.	GT	./.
chr1	46527632	.	G	.	.	LowGQX	END=46527634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527635	.	A	.	.	LowGQX	.	GT	./.
chr1	46527636	.	T	.	.	LowGQX	END=46527637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527638	.	G	.	.	LowGQX	.	GT	./.
chr1	46527639	.	C	.	.	LowGQX	END=46527642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527643	.	A	.	.	LowGQX	END=46527669	GT	./.
chr1	46527670	.	G	.	.	LowGQX	END=46527673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527674	.	G	.	.	LowGQX	.	GT	./.
chr1	46527675	.	A	.	.	LowGQX	END=46527678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527679	.	T	.	.	LowGQX	.	GT	./.
chr1	46527680	.	G	.	.	LowGQX	END=46527690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527691	.	A	.	.	LowGQX	.	GT	./.
chr1	46527692	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527693	.	T	.	.	LowGQX	END=46527694	GT	./.
chr1	46527695	.	T	.	.	LowGQX	END=46527700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527701	.	T	.	.	LowGQX	.	GT	./.
chr1	46527702	.	T	.	.	LowGQX	END=46527740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46527741	.	T	.	.	LowGQX	.	GT	./.
chr1	46527742	.	T	.	.	LowGQX	END=46527745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46531674	.	T	.	.	LowGQX	END=46531675	GT	./.
chr1	46531676	.	T	.	.	LowGQX	END=46531683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46531684	.	A	.	.	LowGQX	.	GT	./.
chr1	46531685	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46531686	.	A	.	.	LowGQX	.	GT	./.
chr1	46531687	.	T	.	.	LowGQX	END=46531689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46531690	.	C	.	.	LowGQX	.	GT	./.
chr1	46531691	.	A	.	.	LowGQX	END=46531696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46531697	.	A	.	.	LowGQX	.	GT	./.
chr1	46531698	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46531699	.	T	.	.	LowGQX	END=46531829	GT	./.
chr1	46531830	.	T	.	.	LowGQX	END=46531832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46531833	.	C	.	.	LowGQX	.	GT	./.
chr1	46531834	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46531835	.	T	.	.	LowGQX	.	GT	./.
chr1	46531836	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46531837	.	T	.	.	LowGQX	.	GT	./.
chr1	46531838	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46531839	.	T	.	.	LowGQX	.	GT	./.
chr1	46531840	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46531841	.	A	.	.	LowGQX	.	GT	./.
chr1	46531842	.	C	.	.	LowGQX	END=46531845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46531846	.	C	.	.	LowGQX	.	GT	./.
chr1	46531847	.	T	.	.	LowGQX	END=46531850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46531851	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	46531852	.	C	.	.	LowGQX	END=46531853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46532561	.	G	.	.	LowGQX	END=46532765	GT	./.
chr1	46543185	.	A	.	.	LowGQX	END=46543287	GT	./.
chr1	46546312	.	A	.	.	LowGQX	END=46546424	GT	./.
chr1	46597335	.	A	.	.	LowGQX	END=46597434	GT	./.
chr1	46597517	.	A	.	.	LowGQX	END=46597628	GT	./.
chr1	46598285	.	G	.	.	LowGQX	END=46598296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46598297	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	46598298	.	G	.	.	LowGQX	END=46598360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46598361	.	T	.	.	LowGQX	END=46598362	GT	./.
chr1	46598363	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46598364	.	T	.	.	LowGQX	.	GT	./.
chr1	46598365	.	G	.	.	LowGQX	END=46598368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46598369	.	A	.	.	LowGQX	.	GT	./.
chr1	46598370	.	C	.	.	LowGQX	END=46598374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46598375	.	T	.	.	LowGQX	.	GT	./.
chr1	46598376	.	G	.	.	LowGQX	END=46598383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46598384	.	A	.	.	LowGQX	.	GT	./.
chr1	46598385	.	C	.	.	LowGQX	END=46598387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46598388	.	A	.	32.74	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:2.88:60:3
chr1	46598389	.	A	.	.	LowGQX	END=46598391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46598392	.	G	.	.	LowGQX	.	GT	./.
chr1	46598393	.	C	.	.	LowGQX	END=46598399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46598400	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	46598401	.	G	.	.	LowGQX	END=46598421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46598422	.	A	.	.	LowGQX	END=46598444	GT	./.
chr1	46641899	.	C	.	.	LowGQX	END=46642143	GT	./.
chr1	46646759	.	G	.	.	LowGQX	END=46646764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46646765	.	C	.	.	LowGQX	END=46646858	GT	./.
chr1	46649861	.	A	.	.	LowGQX	END=46649863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46649864	.	T	.	.	LowGQX	END=46649866	GT	./.
chr1	46649867	.	G	.	.	LowGQX	END=46649874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46649875	.	G	.	.	LowGQX	.	GT	./.
chr1	46649876	.	C	.	.	LowGQX	END=46649889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46649890	.	G	.	.	LowGQX	.	GT	./.
chr1	46649891	.	G	.	.	LowGQX	END=46649893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46649894	.	T	.	.	LowGQX	.	GT	./.
chr1	46649895	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46649896	.	T	.	.	LowGQX	.	GT	./.
chr1	46649897	.	G	.	.	LowGQX	END=46649901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46649902	.	T	.	.	LowGQX	.	GT	./.
chr1	46649903	.	C	.	.	LowGQX	END=46649923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46649924	.	T	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	46649925	.	G	.	.	LowGQX	END=46649931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46649932	.	T	.	.	LowGQX	END=46649945	GT	./.
chr1	46649946	.	G	.	.	LowGQX	END=46649998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46649999	.	T	.	.	LowGQX	.	GT	./.
chr1	46650000	.	T	.	.	LowGQX	END=46650071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650254	.	T	.	.	LowGQX	END=46650353	GT	./.
chr1	46650455	.	A	.	.	LowGQX	END=46650456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650457	.	G	.	.	LowGQX	.	GT	./.
chr1	46650458	.	C	.	.	LowGQX	END=46650461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650462	.	G	.	.	LowGQX	.	GT	./.
chr1	46650463	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650464	.	A	.	.	LowGQX	.	GT	./.
chr1	46650465	.	C	.	.	LowGQX	END=46650468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650469	.	C	.	.	LowGQX	END=46650470	GT	./.
chr1	46650471	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650472	.	A	.	.	LowGQX	.	GT	./.
chr1	46650473	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650474	.	G	.	.	LowGQX	.	GT	./.
chr1	46650475	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650476	.	T	.	.	LowGQX	END=46650478	GT	./.
chr1	46650479	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650480	.	G	.	.	LowGQX	END=46650481	GT	./.
chr1	46650482	.	T	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	46650483	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650484	.	G	.	.	LowGQX	.	GT	./.
chr1	46650485	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650486	.	G	.	.	LowGQX	.	GT	./.
chr1	46650487	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650488	.	C	.	.	LowGQX	END=46650489	GT	./.
chr1	46650490	.	G	.	.	LowGQX	END=46650491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650492	.	C	.	.	LowGQX	END=46650493	GT	./.
chr1	46650494	.	T	.	.	LowGQX	END=46650495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650496	.	A	.	.	LowGQX	.	GT	./.
chr1	46650497	.	A	.	.	LowGQX	END=46650498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650499	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	46650500	.	A	.	.	LowGQX	END=46650501	GT	./.
chr1	46650502	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650503	.	A	.	.	LowGQX	.	GT	./.
chr1	46650504	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650505	.	T	.	.	LowGQX	.	GT	./.
chr1	46650506	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650507	.	T	.	.	LowGQX	.	GT	./.
chr1	46650508	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650509	.	G	.	.	LowGQX	.	GT	./.
chr1	46650510	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650511	.	T	.	.	LowGQX	END=46650512	GT	./.
chr1	46650513	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650514	.	C	.	.	LowGQX	END=46650515	GT	./.
chr1	46650516	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650517	.	G	.	.	LowGQX	END=46650519	GT	./.
chr1	46650520	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650521	.	A	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	46650522	.	C	.	.	LowGQX	END=46650524	GT	./.
chr1	46650525	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650526	.	A	.	.	LowGQX	END=46650527	GT	./.
chr1	46650528	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650529	.	C	.	.	LowGQX	.	GT	./.
chr1	46650530	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650531	.	A	.	.	LowGQX	.	GT	./.
chr1	46650532	.	G	.	.	LowGQX	END=46650533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650534	.	G	.	.	LowGQX	.	GT	./.
chr1	46650535	.	T	.	.	LowGQX	END=46650537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650538	.	A	.	.	LowGQX	END=46650557	GT	./.
chr1	46650630	.	A	.	.	LowGQX	END=46650789	GT	./.
chr1	46650889	.	T	.	.	LowGQX	END=46650896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650897	.	G	.	.	LowGQX	.	GT	./.
chr1	46650898	.	G	.	.	LowGQX	END=46650902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650903	.	T	.	.	LowGQX	END=46650904	GT	./.
chr1	46650905	.	C	.	.	LowGQX	END=46650906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650907	.	A	.	.	LowGQX	.	GT	./.
chr1	46650908	.	T	.	.	LowGQX	END=46650911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650912	.	C	.	.	LowGQX	.	GT	./.
chr1	46650913	.	T	.	.	LowGQX	END=46650915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650916	.	T	.	.	LowGQX	.	GT	./.
chr1	46650917	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650918	.	T	.	.	LowGQX	.	GT	./.
chr1	46650919	.	A	.	.	LowGQX	END=46650922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650923	.	C	.	.	LowGQX	.	GT	./.
chr1	46650924	.	A	.	.	LowGQX	END=46650933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650934	.	A	.	.	LowGQX	.	GT	./.
chr1	46650935	.	T	.	.	LowGQX	END=46650938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650939	.	G	.	.	LowGQX	.	GT	./.
chr1	46650940	.	T	.	.	LowGQX	END=46650943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650944	.	C	.	.	LowGQX	.	GT	./.
chr1	46650945	.	G	.	.	LowGQX	END=46650946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650947	.	G	.	.	LowGQX	END=46650948	GT	./.
chr1	46650949	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650950	.	T	.	.	LowGQX	.	GT	./.
chr1	46650951	.	G	.	.	LowGQX	END=46650952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650953	.	T	.	.	LowGQX	.	GT	./.
chr1	46650954	.	G	.	.	LowGQX	END=46650955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650956	.	G	.	.	LowGQX	END=46650957	GT	./.
chr1	46650958	.	C	.	.	LowGQX	END=46650961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650962	.	T	.	.	LowGQX	.	GT	./.
chr1	46650963	.	G	.	.	LowGQX	END=46650964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650965	.	A	.	.	LowGQX	.	GT	./.
chr1	46650966	.	A	.	.	LowGQX	END=46650979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650980	.	G	.	.	LowGQX	END=46650982	GT	./.
chr1	46650983	.	A	.	.	LowGQX	END=46650986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46650987	.	A	.	.	LowGQX	END=46650988	GT	./.
chr1	46651072	.	A	.	.	LowGQX	END=46651231	GT	./.
chr1	46654390	.	C	.	.	PASS	END=46654428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	46654429	.	G	.	.	PASS	END=46654445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	46654446	.	T	.	.	PASS	END=46654458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	46654459	.	C	.	.	PASS	END=46654476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	46654477	.	G	.	.	PASS	END=46654597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	46654598	.	C	.	.	PASS	END=46654620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	46654621	.	A	.	.	PASS	END=46654652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	46654913	.	C	.	.	PASS	END=46654960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	46654961	.	C	.	.	PASS	END=46655047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	46655048	.	A	.	.	PASS	END=46655119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr1	46655120	.	G	.	.	PASS	END=46655157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:303:99:60
chr1	46655158	.	T	C	9803.69	PASS	DP=338;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=33.2369;MQ=60;MQ0=0;QD=29.00;SB=-4836.22	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,336:338:99:9804,746,0:60:99:1.000
chr1	46655159	.	C	.	.	PASS	END=46655227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:272:99:60
chr1	46655228	.	G	.	.	PASS	END=46655248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	46655249	.	G	.	.	PASS	END=46655265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	46655266	.	A	.	.	PASS	END=46655288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	46655289	.	A	.	.	PASS	END=46655290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	46655475	.	T	.	.	PASS	END=46655508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	46655509	.	G	.	.	PASS	END=46655520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	46655521	.	A	.	.	PASS	END=46655560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	46655561	.	C	.	.	PASS	END=46655589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	46655590	.	G	.	.	PASS	END=46655647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	46655648	.	G	.	.	PASS	END=46655662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	46655663	.	T	.	.	PASS	END=46655685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	46655686	.	A	.	.	PASS	END=46655711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:96:60
chr1	46655712	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:99:60
chr1	46656094	.	C	.	.	PASS	END=46656105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	46656106	.	C	.	.	PASS	END=46656130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	46656131	.	G	.	.	PASS	END=46656167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	46656168	.	T	.	.	PASS	END=46656240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	46656341	.	G	.	.	PASS	END=46656474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	46656475	.	T	.	.	PASS	END=46656503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:82:60
chr1	46656504	.	C	.	.	PASS	END=46656507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	46657701	.	C	.	.	PASS	END=46657732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	46657733	.	A	.	.	PASS	END=46657744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	46657745	.	G	.	.	PASS	END=46657782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	46657783	.	T	.	.	PASS	END=46657852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	46657853	.	G	.	.	PASS	END=46657921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	46657922	.	T	.	.	PASS	END=46657947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr1	46657948	.	C	.	.	PASS	END=46658217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:292:99:60
chr1	46658218	.	A	.	.	PASS	END=46658242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	46658243	.	G	.	.	PASS	END=46658293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	46658294	.	G	.	.	PASS	END=46658313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	46658521	.	C	.	.	PASS	END=46658597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	46658598	.	G	.	.	PASS	END=46658609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	46658610	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:75:60
chr1	46658611	.	A	.	.	PASS	END=46658665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	46658666	.	G	.	.	PASS	END=46658681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	46658795	.	T	.	.	PASS	END=46658820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	46658821	.	C	.	.	PASS	END=46658854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	46658855	.	G	.	.	PASS	END=46658962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	46658963	.	T	.	.	PASS	END=46659068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	46659069	.	C	.	.	PASS	END=46659103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	46659104	.	T	C	2819.46	PASS	DP=106;Dels=0.01;FS=0.000;HRun=3;HaplotypeScore=28.6886;MQ=60;MQ0=0;QD=26.60;SB=-1440.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,104:105:99:2852,223,0:60:99:1.000
chr1	46659105	.	C	.	.	PASS	END=46659123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	46659185	.	C	.	.	PASS	END=46659227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	46659228	.	C	.	.	PASS	END=46659317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	46659318	.	A	.	.	PASS	END=46659349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	46659350	.	C	.	.	PASS	END=46659362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	46659476	.	A	.	.	PASS	END=46659496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	46659497	.	G	.	.	PASS	END=46659523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	46659524	.	T	.	.	PASS	END=46659551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	46659552	.	C	.	.	PASS	END=46659648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	46659895	.	C	.	.	PASS	END=46659930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	46659931	.	T	.	.	PASS	END=46659967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	46659968	.	G	.	.	PASS	END=46660066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	46660067	.	T	.	.	PASS	END=46660096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	46660097	.	T	.	.	PASS	END=46660124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	46660174	.	A	.	.	PASS	END=46660185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	46660186	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:68:60
chr1	46660187	.	G	.	.	PASS	END=46660202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	46660203	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:71:60
chr1	46660204	.	T	.	.	PASS	END=46660224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	46660225	.	C	.	.	PASS	END=46660251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	46660252	.	T	.	.	PASS	END=46660294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	46660295	.	T	C	3409.33	PASS	DP=117;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=13.3096;MQ=60;MQ0=0;QD=29.14;SB=-1229.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,116:117:99:3409,265,0:60:99:1.000
chr1	46660296	.	T	.	.	PASS	END=46660367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	46660368	.	T	.	.	PASS	END=46660374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	46660465	.	C	.	.	PASS	END=46660481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	46660482	.	A	.	.	PASS	END=46660501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	46660502	.	T	.	.	PASS	END=46660553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr1	46660554	.	C	.	.	PASS	END=46660631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:247:99:60
chr1	46660632	.	T	.	.	PASS	END=46660649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	46660650	.	G	.	.	PASS	END=46660680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	46660681	.	G	.	.	PASS	END=46660684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	46661414	.	G	.	.	PASS	END=46661429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	46661430	.	A	.	.	PASS	END=46661436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	46661437	.	G	.	.	PASS	END=46661443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	46661444	.	C	.	.	PASS	END=46661451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	46661452	.	T	.	.	PASS	END=46661471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	46661472	.	G	.	.	PASS	END=46661489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	46661490	.	G	.	.	PASS	END=46661512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	46661513	.	C	.	.	PASS	END=46661527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	46661528	.	G	.	.	PASS	END=46661550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	46661551	.	C	.	.	PASS	END=46661605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	46661606	.	G	.	.	PASS	END=46661689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	46661690	.	C	.	.	PASS	END=46661709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	46661710	.	G	.	.	PASS	END=46661743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	46661744	.	C	.	.	PASS	END=46661755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	46661756	.	A	.	.	PASS	END=46661800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	46662352	.	C	.	.	PASS	END=46662353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	46662354	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:51:60
chr1	46662355	.	G	.	.	PASS	END=46662364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	46662365	.	G	.	.	PASS	END=46662375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	46662376	.	C	.	.	PASS	END=46662401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	46662402	.	C	.	.	PASS	END=46662439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	46662440	.	C	.	.	PASS	END=46662516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	46662517	.	C	.	.	PASS	END=46662551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	46662552	.	C	.	.	PASS	END=46662572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	46662591	.	C	.	.	PASS	END=46662617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	46662618	.	A	.	.	PASS	END=46662635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	46662636	.	C	.	.	PASS	END=46662763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	46662764	.	G	.	.	PASS	END=46662779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	46662780	.	T	.	.	PASS	END=46662794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	46662795	.	C	.	.	PASS	END=46662807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	46662957	.	C	.	.	PASS	END=46662959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	46662960	.	T	.	.	LowGQX	END=46662961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	46662962	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	46662963	.	A	.	.	LowGQX	END=46662964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	46662965	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	46662966	.	A	.	.	LowGQX	END=46662970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	46662971	.	C	.	.	LowGQX	END=46662973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	46662974	.	C	.	.	LowGQX	END=46662981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	46662982	.	A	.	.	LowGQX	END=46662992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	46662993	.	A	.	.	LowGQX	END=46663005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	46663006	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	46663007	.	G	.	.	LowGQX	END=46663013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	46663014	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	46663015	.	T	.	.	LowGQX	END=46663020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	46663021	.	T	.	.	LowGQX	END=46663031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	46663032	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	46663033	.	T	.	.	LowGQX	END=46663035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	46663036	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	46663037	.	T	.	.	LowGQX	END=46663039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	46663040	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	46663041	.	T	.	.	LowGQX	END=46663042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	46663043	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	46663044	.	T	.	.	LowGQX	END=46663056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	46663323	.	A	.	.	PASS	END=46663345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	46663346	.	G	.	.	PASS	END=46663364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	46663365	.	T	.	.	PASS	END=46663392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	46663393	.	G	.	.	PASS	END=46663505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	46663506	.	G	.	.	PASS	END=46663524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	46663525	.	A	.	.	PASS	END=46663544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	46669026	.	G	.	.	LowGQX	END=46669032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46669033	.	A	.	.	LowGQX	.	GT	./.
chr1	46669034	.	G	.	.	LowGQX	END=46669036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46669037	.	A	.	.	LowGQX	.	GT	./.
chr1	46669038	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46669039	.	G	.	.	LowGQX	END=46669040	GT	./.
chr1	46669041	.	C	.	.	LowGQX	END=46669043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46669044	.	C	.	.	LowGQX	END=46669045	GT	./.
chr1	46669046	.	G	.	.	LowGQX	END=46669057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46669058	.	C	.	.	LowGQX	.	GT	./.
chr1	46669059	.	C	.	.	LowGQX	END=46669062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46669063	.	G	.	.	LowGQX	END=46669365	GT	./.
chr1	46685369	.	A	.	.	LowGQX	.	GT	./.
chr1	46685370	.	G	.	.	LowGQX	END=46685374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46685375	.	A	.	.	LowGQX	.	GT	./.
chr1	46685376	.	C	.	.	LowGQX	END=46685379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46685380	.	C	.	.	LowGQX	.	GT	./.
chr1	46685381	.	G	.	.	LowGQX	END=46685387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46685388	.	C	.	.	LowGQX	.	GT	./.
chr1	46685389	.	G	.	.	LowGQX	END=46685417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46685418	.	C	.	.	LowGQX	.	GT	./.
chr1	46685419	.	T	.	.	LowGQX	END=46685426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46685427	.	G	.	.	LowGQX	.	GT	./.
chr1	46685428	.	G	.	.	LowGQX	END=46685430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46685431	.	A	.	.	LowGQX	.	GT	./.
chr1	46685432	.	T	.	.	LowGQX	END=46685436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46685437	.	G	.	.	LowGQX	.	GT	./.
chr1	46685438	.	C	.	.	LowGQX	END=46685441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46685442	.	G	.	.	LowGQX	.	GT	./.
chr1	46685443	.	C	.	.	LowGQX	END=46685450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46685451	.	G	.	.	LowGQX	END=46685452	GT	./.
chr1	46685453	.	T	.	.	LowGQX	END=46685457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46685458	.	G	.	.	LowGQX	.	GT	./.
chr1	46685459	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46685460	.	G	.	.	LowGQX	.	GT	./.
chr1	46685461	.	C	.	.	LowGQX	END=46685482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46685483	.	G	.	.	LowGQX	.	GT	./.
chr1	46685484	.	C	.	.	LowGQX	END=46685496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46685497	.	A	.	.	LowGQX	END=46685894	GT	./.
chr1	46713999	.	T	.	.	PASS	END=46714070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	46714071	.	G	.	.	PASS	END=46714131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	46714133	.	G	.	.	PASS	END=46714242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	46714243	.	T	.	.	PASS	END=46714283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	46714284	.	G	.	.	PASS	END=46714293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	46714294	.	A	.	.	PASS	END=46714321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	46715621	.	G	.	.	PASS	END=46715660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	46715661	.	C	.	.	PASS	END=46715720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	46715721	.	T	.	.	PASS	END=46715798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	46715799	.	A	.	.	PASS	END=46715824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	46715825	.	T	.	.	PASS	END=46715842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	46724307	.	C	.	.	PASS	END=46724315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	46724316	.	T	.	.	PASS	END=46724460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	46724461	.	C	.	.	PASS	END=46724464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	46724465	.	T	.	.	PASS	END=46724469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	46725585	.	C	.	.	PASS	END=46725601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	46725602	.	A	.	.	PASS	END=46725647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:96:60
chr1	46725648	.	C	.	.	PASS	END=46725732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	46725733	.	T	.	.	PASS	END=46725752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	46725753	.	A	.	.	PASS	END=46725765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	46725766	.	T	.	.	PASS	END=46725808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	46725809	.	C	.	.	PASS	END=46725817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	46725818	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:39:60
chr1	46725819	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:81:60
chr1	46725820	.	C	.	.	PASS	END=46725822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	46726163	.	G	.	.	PASS	END=46726171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	46726172	.	C	.	.	PASS	END=46726226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	46726227	.	G	.	.	PASS	END=46726285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	46726286	.	A	.	.	PASS	END=46726320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	46726321	.	G	.	.	PASS	END=46726322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	46726323	.	T	.	.	PASS	END=46726334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	46726348	.	G	.	.	PASS	END=46726387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	46726388	.	T	.	.	PASS	END=46726425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	46726426	.	A	.	.	PASS	END=46726567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	46726568	.	T	.	.	PASS	END=46726628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	46726629	.	G	.	.	PASS	END=46726649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	46726650	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:75:60
chr1	46726651	.	G	.	.	PASS	END=46726669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	46726670	.	A	.	.	PASS	END=46726726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	46726727	.	A	.	.	PASS	END=46726729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	46726730	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:51:60
chr1	46726731	.	T	.	.	PASS	END=46726738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	46726882	.	T	.	.	PASS	END=46726889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	46726890	.	C	.	31.38	LowGQX	DP=29;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:19:29:1.38:60:1
chr1	46726891	.	A	.	.	PASS	END=46726892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	46726893	.	A	.	.	PASS	END=46726894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:45:60
chr1	46726895	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:27:60
chr1	46726896	.	A	.	.	PASS	END=46726898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:63:60
chr1	46726899	.	C	.	78.14	PASS	DP=35;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:26:35:48.15:60:48
chr1	46726900	.	T	.	.	PASS	END=46726903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:66:60
chr1	46726904	.	T	.	.	PASS	END=46726905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	46726906	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:60
chr1	46726907	.	T	.	.	PASS	END=46726908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	46726909	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:60:60
chr1	46726910	.	C	.	.	PASS	END=46726932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	46726933	.	A	.	.	PASS	END=46726953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	46726954	.	G	.	.	PASS	END=46726974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	46726975	.	T	.	.	PASS	END=46727000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	46727001	.	C	.	.	PASS	END=46727068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	46727069	.	T	.	.	PASS	END=46727104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	46727105	.	T	.	.	PASS	END=46727108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	46733080	.	C	.	.	PASS	END=46733084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	46733085	.	G	.	.	PASS	END=46733094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	46733095	.	T	.	.	PASS	END=46733101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	46733102	.	T	.	.	PASS	END=46733106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	46733107	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:62:60
chr1	46733108	.	T	.	.	PASS	END=46733138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	46733139	.	G	.	.	PASS	END=46733163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	46733164	.	T	.	.	PASS	END=46733180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	46733181	.	C	.	.	PASS	END=46733215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	46733216	.	C	.	.	PASS	END=46733314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	46733315	.	G	.	.	PASS	END=46733323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	46733324	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:73:52:60
chr1	46733325	.	C	.	.	PASS	END=46733332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	46736280	.	A	.	.	PASS	END=46736301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	46736302	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:75:75:60
chr1	46736303	.	T	.	.	PASS	END=46736378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	46736379	.	G	.	.	PASS	END=46736431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	46736432	.	C	.	.	PASS	END=46736465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	46736466	.	C	.	.	PASS	END=46736475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	46736476	.	G	.	.	PASS	END=46736496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	46736497	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:75:60
chr1	46736498	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:48:60
chr1	46736499	.	C	.	.	PASS	END=46736501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	46736502	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:48:60
chr1	46736503	.	C	.	.	PASS	END=46736507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	46736508	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:3:60
chr1	46738085	.	A	.	.	PASS	END=46738175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	46738176	.	A	.	.	PASS	END=46738263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	46738293	.	A	.	.	PASS	END=46738352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	46738353	.	C	.	.	PASS	END=46738387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	46738388	.	A	.	.	PASS	END=46738487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	46738488	.	G	.	.	PASS	END=46738502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	46738503	.	C	.	.	PASS	END=46738513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	46738514	.	A	.	.	PASS	END=46738525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	46738976	.	G	.	.	PASS	END=46739057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	46739058	.	A	.	.	PASS	END=46739111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	46739112	.	T	.	.	PASS	END=46739154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:87:60
chr1	46739155	.	A	.	.	PASS	END=46739182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	46739183	.	G	.	.	PASS	END=46739188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	46739245	.	C	.	.	PASS	END=46739270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	46739271	.	G	.	.	PASS	END=46739308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	46739309	.	C	.	.	PASS	END=46739411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	46739412	.	G	.	.	PASS	END=46739444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	46739445	.	C	.	.	PASS	END=46739470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	46739759	.	T	.	.	PASS	END=46739841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	46739842	.	C	.	.	PASS	END=46739863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	46739864	.	T	.	.	PASS	END=46739871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	46739872	.	G	.	.	PASS	END=46739895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	46739896	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:75:60
chr1	46739897	.	A	.	.	PASS	END=46739923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:79:60
chr1	46739924	.	A	.	.	PASS	END=46739933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	46739934	.	G	.	.	PASS	END=46739939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	46740159	.	C	.	.	PASS	END=46740198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	46740199	.	T	.	.	PASS	END=46740235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	46740236	.	C	.	.	PASS	END=46740312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr1	46740313	.	C	.	.	PASS	END=46740372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	46740373	.	T	.	.	PASS	END=46740393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	46740394	.	G	.	.	PASS	END=46740403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	46740404	.	A	.	.	PASS	END=46740417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	46740418	.	G	.	.	PASS	END=46740432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:78:60
chr1	46740433	.	C	.	.	PASS	END=46740440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	46743438	.	A	.	.	PASS	END=46743473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	46743474	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:66:60
chr1	46743475	.	C	.	.	PASS	END=46743484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	46743485	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:42:60
chr1	46743486	.	C	.	.	PASS	END=46743547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:87:60
chr1	46743548	.	C	.	.	PASS	END=46743591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	46743592	.	T	.	.	PASS	END=46743593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:59
chr1	46743594	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:67:59
chr1	46743595	.	G	.	.	PASS	END=46743627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:59
chr1	46743628	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:66:60
chr1	46743629	.	T	.	.	PASS	END=46743640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	46743641	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:57:60
chr1	46743642	.	A	.	.	PASS	END=46743690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	46743691	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:72:60
chr1	46743692	.	A	.	.	PASS	END=46743695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	46743696	.	T	.	.	PASS	END=46743770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:87:60
chr1	46743771	.	C	.	.	PASS	END=46743823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	46743824	.	G	.	.	PASS	END=46743845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	46743846	.	G	.	.	PASS	END=46743919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	46743920	.	A	.	.	PASS	END=46743942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	46743943	.	G	.	.	PASS	END=46743955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	46743956	.	A	.	.	PASS	END=46743966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	46743967	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:42:60
chr1	46743968	.	T	.	.	PASS	END=46743973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	46743974	.	T	.	.	PASS	END=46743981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	46743982	.	A	.	.	PASS	END=46744004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	46744005	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:39:60
chr1	46744376	.	A	.	.	LowGQX	END=46744758	GT	./.
chr1	46744842	.	C	.	.	LowGQX	END=46744941	GT	./.
chr1	46744948	.	C	.	.	LowGQX	END=46745047	GT	./.
chr1	46745114	.	T	.	.	LowGQX	END=46745288	GT	./.
chr1	46745862	.	A	.	.	LowGQX	END=46745964	GT	./.
chr1	46746066	.	A	.	.	LowGQX	END=46746234	GT	./.
chr1	46746795	.	A	.	.	LowGQX	END=46746937	GT	./.
chr1	46746938	.	G	.	.	LowGQX	END=46746940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46746941	.	C	.	.	LowGQX	.	GT	./.
chr1	46746942	.	C	.	.	LowGQX	END=46746961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46746962	.	A	.	.	LowGQX	END=46746963	GT	./.
chr1	46746964	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46746965	.	G	.	.	LowGQX	.	GT	./.
chr1	46746966	.	G	.	.	LowGQX	END=46746976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46746977	.	G	.	.	LowGQX	.	GT	./.
chr1	46746978	.	C	.	.	LowGQX	END=46746981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46746982	.	G	.	.	LowGQX	.	GT	./.
chr1	46746983	.	C	.	.	LowGQX	END=46747059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46750897	.	C	.	.	LowGQX	END=46750899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46750900	.	T	.	.	LowGQX	.	GT	./.
chr1	46750901	.	G	.	.	LowGQX	END=46750940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46750941	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	46750942	.	C	.	.	LowGQX	END=46750961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	46750962	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	46750963	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	46750964	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	46750965	.	T	.	.	LowGQX	END=46750978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	46750979	.	C	.	36	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.01:60:6
chr1	46750980	.	A	.	.	LowGQX	END=46750985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	46750986	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	46750987	.	G	.	.	LowGQX	END=46750996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	46750997	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	46750998	.	A	.	.	LowGQX	END=46751035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	46751036	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	46751037	.	T	.	.	LowGQX	END=46751154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46751155	.	T	.	.	LowGQX	.	GT	./.
chr1	46751156	.	C	.	.	LowGQX	END=46751472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46751473	.	A	.	.	LowGQX	END=46751516	GT	./.
chr1	46751517	.	G	.	.	LowGQX	END=46751644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46751645	.	T	.	.	LowGQX	END=46752173	GT	./.
chr1	46763221	.	A	.	.	LowGQX	END=46763320	GT	./.
chr1	46763950	.	A	.	.	LowGQX	END=46764018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46764019	.	T	.	.	LowGQX	END=46764049	GT	./.
chr1	46768794	.	A	.	.	LowGQX	END=46768996	GT	./.
chr1	46769416	.	T	.	.	LowGQX	END=46769498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46769499	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	46769500	.	A	.	.	LowGQX	END=46769515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46774677	.	A	.	.	LowGQX	END=46774712	GT	./.
chr1	46774713	.	G	.	.	LowGQX	END=46774836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46775825	.	A	.	.	LowGQX	END=46775990	GT	./.
chr1	46782132	.	G	.	.	LowGQX	END=46782290	GT	./.
chr1	46806496	.	G	.	.	LowGQX	END=46806549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46806550	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	46806551	.	T	.	.	LowGQX	END=46806595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46810471	.	A	.	.	LowGQX	END=46810818	GT	./.
chr1	46812591	.	A	.	.	LowGQX	END=46812749	GT	./.
chr1	46818538	.	A	.	.	LowGQX	END=46818702	GT	./.
chr1	46826374	.	A	.	.	LowGQX	END=46826502	GT	./.
chr1	46827240	.	A	.	.	LowGQX	END=46827520	GT	./.
chr1	46859970	.	G	.	.	PASS	END=46860024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	46860025	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:21:60
chr1	46860026	.	G	.	.	PASS	END=46860027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	46860028	.	A	.	.	LowGQX	END=46860042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	46860043	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:1:60
chr1	46860044	.	C	.	.	LowGQX	END=46860066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	46860067	.	T	.	.	LowGQX	END=46860068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	46860069	.	G	.	.	LowGQX	END=46860077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	46860078	.	T	.	.	LowGQX	END=46860080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	46860081	.	T	.	.	LowGQX	END=46860091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	46860092	.	G	.	.	LowGQX	END=46860095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	46860096	.	G	.	.	LowGQX	END=46860107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	46860108	.	C	.	.	LowGQX	END=46860125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	46860126	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	46860127	.	C	.	.	LowGQX	END=46860152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	46860153	.	C	.	.	LowGQX	END=46860154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	46860155	.	A	.	.	LowGQX	END=46860157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:60
chr1	46860158	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	46860159	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:60
chr1	46860160	.	G	.	.	LowGQX	END=46860165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	46860166	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	46860167	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	46860168	.	G	.	.	PASS	END=46860173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	46860174	.	C	.	.	PASS	END=46860178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	46860179	.	G	.	.	PASS	END=46860190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	46860191	.	G	.	.	PASS	END=46860227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:48:60
chr1	46860228	.	G	.	.	PASS	END=46860236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	46860237	.	G	A	362.75	PASS	BaseQRankSum=0.696;DP=37;Dels=0.00;FS=3.091;HRun=1;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=0.201;QD=9.80;ReadPosRankSum=-1.872;SB=-111.78	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:22,15:37:99:393,0,537:60:99:0.405
chr1	46860238	.	A	.	.	PASS	END=46860266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	46867712	.	G	.	.	PASS	END=46867810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	46867811	.	C	.	.	PASS	END=46867838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	46867839	.	T	.	.	PASS	END=46867864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	46867865	.	T	.	.	PASS	END=46867911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:87:60
chr1	46867912	.	G	.	.	PASS	END=46867925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	46867926	.	A	.	.	PASS	END=46867927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	46870635	.	T	.	.	PASS	END=46870759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	46870760	.	C	.	.	PASS	END=46870821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:98:60
chr1	46870822	.	T	.	.	PASS	END=46870855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	46870856	.	C	.	.	PASS	END=46870860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:80:60
chr1	46870861	.	A	.	.	PASS	END=46870864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	46870865	.	C	.	.	PASS	END=46870871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	46870993	.	C	.	.	PASS	END=46871015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	46871016	.	C	.	.	PASS	END=46871104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	46871105	.	T	.	.	PASS	END=46871130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	46871131	.	G	.	.	PASS	END=46871164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	46871165	.	A	.	.	PASS	END=46871175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	46871176	.	A	.	.	PASS	END=46871208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	46871209	.	G	.	.	PASS	END=46871257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	46871258	.	A	.	.	PASS	END=46871325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	46871326	.	G	.	.	PASS	END=46871460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	46871461	.	C	.	.	PASS	END=46871511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	46871512	.	T	.	.	PASS	END=46871517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	46871659	.	T	.	.	PASS	END=46871777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	46871778	.	C	.	.	PASS	END=46871801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	46871865	.	T	.	.	PASS	END=46871985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:281:99:60
chr1	46871986	.	T	C	7557.71	PASS	BaseQRankSum=1.277;DP=297;Dels=0.00;FS=3.674;HRun=0;HaplotypeScore=37.9817;MQ=60;MQ0=0;MQRankSum=0.844;QD=25.45;ReadPosRankSum=-0.453;SB=-4085.06	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,293:297:99:7558,536,0:60:99:0.993
chr1	46871987	.	G	.	.	PASS	END=46872017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr1	46872018	.	C	.	.	PASS	END=46872051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	46872052	.	T	.	.	PASS	END=46872061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	46872062	.	T	.	.	PASS	END=46872087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	46872088	.	G	.	.	PASS	END=46872091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	46874080	.	C	.	.	PASS	END=46874105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	46874106	.	C	.	.	PASS	END=46874184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	46874185	.	A	.	.	PASS	END=46874223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	46874224	.	A	.	.	PASS	END=46874243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	46874244	.	T	.	.	PASS	END=46874263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	46874264	.	T	.	.	PASS	END=46874278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	46874279	.	G	.	.	PASS	END=46874287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	46874288	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:69:60
chr1	46874289	.	C	.	.	PASS	END=46874295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	46874296	.	C	.	.	PASS	END=46874307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	46874722	.	C	.	.	PASS	END=46874757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	46874758	.	C	.	.	PASS	END=46874843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	46874844	.	T	.	.	PASS	END=46874884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	46874885	.	G	.	.	PASS	END=46874902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	46874903	.	G	.	.	PASS	END=46874921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	46876019	.	T	.	.	PASS	END=46876040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	46876041	.	G	.	.	PASS	END=46876072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	46876073	.	A	.	.	PASS	END=46876145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	46876146	.	C	.	.	PASS	END=46876176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	46876177	.	C	.	.	PASS	END=46876193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	46876194	.	C	.	.	PASS	END=46876195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:87:60
chr1	46876196	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:53:60
chr1	46876197	.	G	.	.	PASS	END=46876199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:90:60
chr1	46876200	.	T	.	93.17	PASS	DP=55;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:41:55:63.17:60:63
chr1	46876201	.	G	.	.	PASS	END=46876203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr1	46876204	.	T	.	66.10	PASS	DP=48;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:30:48:36.11:60:36
chr1	46876205	.	G	.	.	PASS	END=46876220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	46876435	.	G	.	.	PASS	END=46876469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:93:60
chr1	46876470	.	C	.	.	PASS	END=46876503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	46876504	.	T	.	.	PASS	END=46876573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	46876574	.	C	.	.	PASS	END=46876606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	46877233	.	A	.	.	PASS	END=46877331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	46877332	.	A	.	.	PASS	END=46877342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	46877343	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:75:60
chr1	46877344	.	T	.	.	PASS	END=46877350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	46877351	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:63:60
chr1	46877352	.	G	.	.	PASS	END=46877354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	46877355	.	T	.	99.22	PASS	DP=39;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:28:39:69.22:60:69
chr1	46877356	.	G	.	.	PASS	END=46877357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	46877358	.	T	.	78.14	PASS	DP=35;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:24:35:48.14:60:48
chr1	46877359	.	G	.	.	PASS	END=46877361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	46877362	.	G	.	.	PASS	END=46877364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:57:59
chr1	46877365	.	A	.	66.11	PASS	DP=33;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:21:33:36.11:59:36
chr1	46877366	.	G	.	.	PASS	END=46877368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:59
chr1	46877369	.	T	.	69.12	PASS	DP=35;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:23:35:39.12:60:39
chr1	46877370	.	G	.	.	PASS	END=46877372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	46877373	.	G	.	.	PASS	END=46877374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:48:60
chr1	46877764	.	G	.	.	PASS	END=46877782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	46877783	.	T	.	.	PASS	END=46877798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	46877799	.	G	.	.	PASS	END=46877937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	46877938	.	C	.	.	PASS	END=46877957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	46877958	.	A	.	.	PASS	END=46877974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	46878696	.	T	.	.	PASS	END=46878729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	46878730	.	C	.	.	PASS	END=46878749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	46878750	.	C	.	.	PASS	END=46878758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	46878759	.	A	.	.	PASS	END=46878803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	46878804	.	C	.	.	PASS	END=46878908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	46878909	.	C	.	.	PASS	END=46878940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	46878941	.	T	.	.	PASS	END=46878943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	46879068	.	G	.	.	PASS	END=46879109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	46879110	.	C	.	.	PASS	END=46879142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	46879143	.	C	.	.	PASS	END=46879156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	46879157	.	G	.	.	PASS	END=46879243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	46879244	.	C	.	.	PASS	END=46879281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	46879282	.	C	.	.	PASS	END=46879292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	46879293	.	A	.	.	PASS	END=46879294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	46879295	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:69:60
chr1	46879296	.	C	.	.	PASS	END=46879298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	46972681	.	C	.	.	LowGQX	END=46972690	GT	./.
chr1	46972691	.	C	.	.	LowGQX	END=46972751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46972752	.	C	.	.	LowGQX	.	GT	./.
chr1	46972753	.	A	.	.	LowGQX	END=46972807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46972808	.	T	.	.	LowGQX	.	GT	./.
chr1	46972809	.	G	.	.	LowGQX	END=46972832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46972833	.	G	.	.	LowGQX	.	GT	./.
chr1	46972834	.	C	.	.	LowGQX	END=46972838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46976132	.	G	.	.	LowGQX	END=46976328	GT	./.
chr1	46976605	.	A	.	.	LowGQX	END=46976606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46976607	.	G	.	.	LowGQX	.	GT	./.
chr1	46976608	.	T	.	.	LowGQX	END=46976618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46976619	.	A	.	.	LowGQX	.	GT	./.
chr1	46976620	.	A	.	.	LowGQX	END=46976622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46976623	.	G	.	.	LowGQX	.	GT	./.
chr1	46976624	.	C	.	.	LowGQX	END=46976640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46976641	.	A	.	.	LowGQX	.	GT	./.
chr1	46976642	.	G	.	.	LowGQX	END=46976643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46976644	.	A	.	.	LowGQX	.	GT	./.
chr1	46976645	.	G	.	.	LowGQX	END=46976656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46976657	.	G	.	.	LowGQX	.	GT	./.
chr1	46976658	.	C	.	.	LowGQX	END=46976681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46976682	.	A	.	.	LowGQX	.	GT	./.
chr1	46976683	.	A	.	.	LowGQX	END=46976692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46976693	.	G	.	.	LowGQX	.	GT	./.
chr1	46976694	.	G	.	.	LowGQX	END=46976733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	46976734	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	46976735	.	T	.	.	LowGQX	END=46976750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46976751	.	G	.	.	LowGQX	.	GT	./.
chr1	46976752	.	A	.	.	LowGQX	END=46976753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46976754	.	C	.	.	LowGQX	.	GT	./.
chr1	46976755	.	A	.	.	LowGQX	END=46976761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46976762	.	A	.	.	LowGQX	END=46976763	GT	./.
chr1	46976764	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46976765	.	T	.	.	LowGQX	.	GT	./.
chr1	46976766	.	C	.	.	LowGQX	END=46976814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	46976815	.	A	.	.	LowGQX	END=46976957	GT	./.
chr1	46977713	.	A	.	.	LowGQX	END=46978168	GT	./.
chr1	47012998	.	T	.	.	LowGQX	END=47013481	GT	./.
chr1	47014852	.	T	.	.	LowGQX	END=47014923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47014924	.	T	.	.	LowGQX	END=47014951	GT	./.
chr1	47015590	.	C	.	.	LowGQX	END=47015689	GT	./.
chr1	47016736	.	C	.	.	LowGQX	END=47016915	GT	./.
chr1	47024245	.	T	.	.	LowGQX	END=47024253	GT	./.
chr1	47024254	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024255	.	C	.	.	LowGQX	.	GT	./.
chr1	47024256	.	T	.	.	LowGQX	END=47024272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024273	.	C	.	.	LowGQX	.	GT	./.
chr1	47024274	.	T	.	.	LowGQX	END=47024276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024277	.	A	.	.	LowGQX	.	GT	./.
chr1	47024278	.	C	.	.	LowGQX	END=47024279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024280	.	A	.	.	LowGQX	.	GT	./.
chr1	47024281	.	C	.	.	LowGQX	END=47024304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024305	.	C	.	.	LowGQX	.	GT	./.
chr1	47024306	.	T	.	.	LowGQX	END=47024320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024321	.	A	.	.	LowGQX	.	GT	./.
chr1	47024322	.	C	.	.	LowGQX	END=47024336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024337	.	A	.	.	LowGQX	END=47024338	GT	./.
chr1	47024339	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024340	.	C	.	.	LowGQX	.	GT	./.
chr1	47024341	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024342	.	T	.	.	LowGQX	.	GT	./.
chr1	47024343	.	C	.	.	LowGQX	END=47024352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024353	.	A	.	.	LowGQX	END=47024354	GT	./.
chr1	47024355	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024356	.	C	.	.	LowGQX	.	GT	./.
chr1	47024357	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024358	.	A	.	.	LowGQX	.	GT	./.
chr1	47024359	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024360	.	C	.	.	LowGQX	END=47024361	GT	./.
chr1	47024362	.	G	.	.	LowGQX	END=47024377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024378	.	C	.	.	LowGQX	.	GT	./.
chr1	47024379	.	C	.	.	LowGQX	END=47024381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47024382	.	T	.	.	LowGQX	.	GT	./.
chr1	47024383	.	G	.	.	LowGQX	END=47024408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024409	.	T	.	.	LowGQX	END=47024410	GT	./.
chr1	47024411	.	G	.	.	LowGQX	END=47024416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024417	.	G	.	.	LowGQX	.	GT	./.
chr1	47024418	.	G	.	.	LowGQX	END=47024420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024421	.	A	.	.	LowGQX	END=47024422	GT	./.
chr1	47024423	.	G	.	.	LowGQX	END=47024424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024425	.	G	.	.	LowGQX	END=47024426	GT	./.
chr1	47024427	.	G	.	.	LowGQX	END=47024430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024431	.	G	.	.	LowGQX	.	GT	./.
chr1	47024432	.	C	.	.	LowGQX	END=47024443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024444	.	A	.	.	LowGQX	.	GT	./.
chr1	47024445	.	G	.	.	LowGQX	END=47024447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024448	.	C	.	.	LowGQX	.	GT	./.
chr1	47024449	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024450	.	T	.	.	LowGQX	.	GT	./.
chr1	47024451	.	C	.	.	LowGQX	END=47024452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024453	.	G	.	.	LowGQX	.	GT	./.
chr1	47024454	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024455	.	T	.	.	LowGQX	.	GT	./.
chr1	47024456	.	C	.	.	LowGQX	END=47024469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47024470	.	T	.	.	LowGQX	.	GT	./.
chr1	47024471	.	T	.	.	LowGQX	END=47024474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47025878	.	A	.	.	LowGQX	END=47025930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47025931	.	G	T	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	47025932	.	T	.	.	LowGQX	END=47025968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47025969	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	47025970	.	G	.	.	LowGQX	END=47025977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47027148	.	A	.	.	LowGQX	END=47027345	GT	./.
chr1	47028309	.	G	.	.	LowGQX	END=47028517	GT	./.
chr1	47030711	.	A	.	.	LowGQX	END=47030810	GT	./.
chr1	47034093	.	T	.	.	LowGQX	END=47034192	GT	./.
chr1	47037088	.	C	.	.	LowGQX	END=47037256	GT	./.
chr1	47037733	.	A	.	.	LowGQX	END=47037798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47037799	.	A	.	.	LowGQX	END=47037841	GT	./.
chr1	47040600	.	C	.	.	LowGQX	END=47040699	GT	./.
chr1	47042237	.	T	.	.	LowGQX	END=47042270	GT	./.
chr1	47042271	.	G	.	.	LowGQX	END=47042284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47042285	.	A	.	.	LowGQX	.	GT	./.
chr1	47042286	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47042287	.	A	.	.	LowGQX	.	GT	./.
chr1	47042288	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47042289	.	A	.	.	LowGQX	.	GT	./.
chr1	47042290	.	C	.	.	LowGQX	END=47042336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47046159	.	A	.	.	LowGQX	END=47046301	GT	./.
chr1	47048524	.	G	.	.	LowGQX	END=47048525	GT	./.
chr1	47048526	.	T	.	.	LowGQX	END=47048527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47048528	.	C	.	.	LowGQX	.	GT	./.
chr1	47048529	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47048530	.	C	.	.	LowGQX	.	GT	./.
chr1	47048531	.	T	.	.	LowGQX	END=47048607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47048608	.	A	.	.	LowGQX	.	GT	./.
chr1	47048609	.	G	.	.	LowGQX	END=47048623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47048898	.	A	.	.	LowGQX	END=47049003	GT	./.
chr1	47051504	.	C	.	.	LowGQX	END=47051658	GT	./.
chr1	47059783	.	A	.	.	LowGQX	END=47059952	GT	./.
chr1	47060469	.	C	.	.	LowGQX	END=47060627	GT	./.
chr1	47075232	.	G	.	.	LowGQX	END=47075391	GT	./.
chr1	47075672	.	A	.	.	LowGQX	END=47075798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47075799	.	A	.	.	LowGQX	END=47075878	GT	./.
chr1	47078574	.	A	.	.	LowGQX	END=47078590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47078591	.	A	.	.	LowGQX	END=47078895	GT	./.
chr1	47078896	.	T	.	.	LowGQX	END=47079062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47080641	.	A	.	.	LowGQX	END=47080750	GT	./.
chr1	47099370	.	T	.	.	LowGQX	END=47099520	GT	./.
chr1	47101446	.	T	.	.	LowGQX	END=47101727	GT	./.
chr1	47101728	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47101729	.	C	.	.	LowGQX	.	GT	./.
chr1	47101730	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	47101731	.	C	.	.	LowGQX	END=47101774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47101775	.	C	.	.	LowGQX	.	GT	./.
chr1	47101776	.	C	.	.	LowGQX	END=47101778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47101779	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	47101780	.	T	.	.	LowGQX	END=47101794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47101795	.	C	.	.	LowGQX	.	GT	./.
chr1	47101796	.	C	.	.	LowGQX	END=47101816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47108814	.	T	.	.	LowGQX	END=47108975	GT	./.
chr1	47110831	.	A	.	.	LowGQX	END=47110930	GT	./.
chr1	47118227	.	C	.	.	LowGQX	.	GT	./.
chr1	47118228	.	C	.	.	LowGQX	END=47118234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47118235	.	T	.	.	LowGQX	.	GT	./.
chr1	47118236	.	G	.	.	LowGQX	END=47118239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47118240	.	A	.	.	LowGQX	.	GT	./.
chr1	47118241	.	C	.	.	LowGQX	END=47118246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47118247	.	A	.	.	LowGQX	.	GT	./.
chr1	47118248	.	C	.	.	LowGQX	END=47118253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47118254	.	G	.	.	LowGQX	.	GT	./.
chr1	47118255	.	T	.	.	LowGQX	END=47118258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47118259	.	A	.	.	LowGQX	.	GT	./.
chr1	47118260	.	C	.	.	LowGQX	END=47118267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47118268	.	A	.	.	LowGQX	END=47118269	GT	./.
chr1	47118270	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47118271	.	C	.	.	LowGQX	.	GT	./.
chr1	47118272	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47118273	.	G	.	.	LowGQX	END=47118274	GT	./.
chr1	47118275	.	T	.	.	LowGQX	END=47118284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47118285	.	A	.	.	LowGQX	END=47118326	GT	./.
chr1	47119465	.	C	.	.	LowGQX	END=47119564	GT	./.
chr1	47123727	.	A	.	.	LowGQX	END=47123880	GT	./.
chr1	47124335	.	T	.	.	LowGQX	END=47124416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47124417	.	A	.	.	LowGQX	END=47124434	GT	./.
chr1	47129534	.	G	.	.	LowGQX	END=47129541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129542	.	C	.	.	LowGQX	.	GT	./.
chr1	47129543	.	C	.	.	LowGQX	END=47129545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129546	.	A	.	.	LowGQX	.	GT	./.
chr1	47129547	.	T	.	.	LowGQX	END=47129548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129549	.	C	.	.	LowGQX	.	GT	./.
chr1	47129550	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129551	.	C	.	.	LowGQX	.	GT	./.
chr1	47129552	.	C	.	.	LowGQX	END=47129559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129560	.	T	.	.	LowGQX	.	GT	./.
chr1	47129561	.	G	.	.	LowGQX	END=47129562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129563	.	C	.	.	LowGQX	.	GT	./.
chr1	47129564	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129565	.	T	.	.	LowGQX	.	GT	./.
chr1	47129566	.	C	.	.	LowGQX	END=47129567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129568	.	C	.	.	LowGQX	.	GT	./.
chr1	47129569	.	C	.	.	LowGQX	END=47129570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129571	.	A	.	.	LowGQX	.	GT	./.
chr1	47129572	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129573	.	A	.	.	LowGQX	.	GT	./.
chr1	47129574	.	C	.	.	LowGQX	END=47129575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129576	.	A	.	.	LowGQX	END=47129577	GT	./.
chr1	47129578	.	T	.	.	LowGQX	END=47129581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129582	.	T	.	.	LowGQX	.	GT	./.
chr1	47129583	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129584	.	C	.	.	LowGQX	.	GT	./.
chr1	47129585	.	T	.	.	LowGQX	END=47129587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129588	.	G	.	.	LowGQX	END=47129590	GT	./.
chr1	47129591	.	C	.	.	LowGQX	END=47129592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129593	.	A	.	.	LowGQX	.	GT	./.
chr1	47129594	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129595	.	C	.	.	LowGQX	.	GT	./.
chr1	47129596	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129597	.	T	.	.	LowGQX	.	GT	./.
chr1	47129598	.	A	.	.	LowGQX	END=47129600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129601	.	T	.	.	LowGQX	.	GT	./.
chr1	47129602	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129603	.	A	.	.	LowGQX	.	GT	./.
chr1	47129604	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129605	.	A	.	.	LowGQX	.	GT	./.
chr1	47129606	.	A	.	.	LowGQX	END=47129611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47129612	.	C	.	.	LowGQX	END=47129613	GT	./.
chr1	47129614	.	A	.	.	LowGQX	END=47129633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47130926	.	A	.	.	LowGQX	END=47130936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47130937	.	C	.	.	LowGQX	END=47131044	GT	./.
chr1	47131270	.	G	.	.	LowGQX	END=47131369	GT	./.
chr1	47133716	.	C	.	.	LowGQX	END=47133730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47133731	.	G	.	.	LowGQX	.	GT	./.
chr1	47133732	.	C	.	.	LowGQX	END=47133748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47133749	.	G	.	.	LowGQX	END=47133750	GT	./.
chr1	47133751	.	C	.	.	LowGQX	END=47133755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47133756	.	T	.	.	LowGQX	.	GT	./.
chr1	47133757	.	A	.	.	LowGQX	END=47133761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47133762	.	T	.	.	LowGQX	.	GT	./.
chr1	47133763	.	C	.	.	LowGQX	END=47133772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47133773	.	G	.	.	LowGQX	END=47133774	GT	./.
chr1	47133775	.	T	.	.	LowGQX	END=47133795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47133796	.	C	.	.	LowGQX	.	GT	./.
chr1	47133797	.	C	.	.	LowGQX	END=47133803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47133804	.	C	.	.	LowGQX	END=47134065	GT	./.
chr1	47135081	.	T	.	.	LowGQX	END=47135180	GT	./.
chr1	47137444	.	A	.	.	LowGQX	END=47137643	GT	./.
chr1	47138544	.	G	.	.	LowGQX	END=47138695	GT	./.
chr1	47138696	.	C	.	.	LowGQX	END=47138700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47138701	.	T	.	.	LowGQX	END=47138704	GT	./.
chr1	47138705	.	G	.	.	LowGQX	END=47138706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47138707	.	A	.	.	LowGQX	.	GT	./.
chr1	47138708	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47138709	.	T	.	.	LowGQX	.	GT	./.
chr1	47138710	.	G	.	.	LowGQX	END=47138711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47138712	.	A	.	.	LowGQX	.	GT	./.
chr1	47138713	.	T	.	.	LowGQX	END=47138715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47138716	.	A	.	.	LowGQX	.	GT	./.
chr1	47138717	.	C	.	.	LowGQX	END=47138718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47138719	.	A	.	.	LowGQX	END=47138720	GT	./.
chr1	47138721	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47138722	.	G	.	.	LowGQX	.	GT	./.
chr1	47138723	.	A	.	.	LowGQX	END=47138731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47138732	.	C	.	.	LowGQX	.	GT	./.
chr1	47138733	.	G	.	.	LowGQX	END=47138739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47138740	.	A	.	.	LowGQX	.	GT	./.
chr1	47138741	.	T	.	.	LowGQX	END=47138742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47138743	.	C	.	.	LowGQX	END=47138744	GT	./.
chr1	47138745	.	G	.	.	LowGQX	END=47138747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47138748	.	A	.	.	LowGQX	.	GT	./.
chr1	47138749	.	T	.	.	LowGQX	END=47138765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47138766	.	C	.	.	LowGQX	END=47138767	GT	./.
chr1	47138768	.	T	.	.	LowGQX	END=47138777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47138778	.	A	.	.	LowGQX	END=47138779	GT	./.
chr1	47138780	.	G	.	.	LowGQX	END=47138782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47138783	.	T	.	.	LowGQX	.	GT	./.
chr1	47138784	.	G	.	.	LowGQX	END=47138788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47138789	.	T	.	.	LowGQX	.	GT	./.
chr1	47138790	.	G	.	.	LowGQX	END=47138809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47138810	.	T	.	.	LowGQX	END=47138811	GT	./.
chr1	47138812	.	T	.	.	LowGQX	END=47138813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47138814	.	T	.	.	LowGQX	END=47138815	GT	./.
chr1	47138816	.	G	.	.	LowGQX	END=47138826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47138827	.	T	.	.	LowGQX	.	GT	./.
chr1	47138828	.	C	.	.	LowGQX	END=47138843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47138844	.	C	.	.	LowGQX	END=47139128	GT	./.
chr1	47144101	.	G	.	.	LowGQX	END=47144138	GT	./.
chr1	47144139	.	A	.	.	LowGQX	END=47144276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47144277	.	C	.	.	LowGQX	END=47144310	GT	./.
chr1	47148970	.	A	.	.	LowGQX	END=47149099	GT	./.
chr1	47150161	.	A	.	.	LowGQX	END=47150276	GT	./.
chr1	47152394	.	T	.	.	LowGQX	END=47152549	GT	./.
chr1	47154023	.	A	.	.	LowGQX	END=47154218	GT	./.
chr1	47155257	.	A	.	.	LowGQX	END=47155365	GT	./.
chr1	47157497	.	A	.	.	LowGQX	END=47157611	GT	./.
chr1	47162221	.	A	.	.	LowGQX	END=47162323	GT	./.
chr1	47173576	.	A	.	.	LowGQX	END=47173725	GT	./.
chr1	47181965	.	A	.	.	LowGQX	END=47182117	GT	./.
chr1	47183573	.	A	.	.	LowGQX	END=47183575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	47183576	.	T	.	.	LowGQX	.	GT	./.
chr1	47183577	.	G	.	.	LowGQX	END=47183621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	47183622	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	47183623	.	T	.	.	LowGQX	END=47183633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	47183634	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	47183635	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	47183636	.	C	.	.	LowGQX	END=47183685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	47183686	.	C	.	.	LowGQX	END=47183690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	47183691	.	C	.	.	LowGQX	END=47183711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47183712	.	G	T	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:33,0,30:60:5:0.500
chr1	47183713	.	T	.	.	LowGQX	END=47183761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47264752	.	C	.	.	PASS	END=47264896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	47264897	.	G	.	.	PASS	END=47264935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	47276478	.	A	.	.	PASS	END=47276511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	47276512	.	G	.	.	PASS	END=47276614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	47276615	.	C	.	.	PASS	END=47276623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	47276785	.	G	.	.	PASS	END=47276828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	47276829	.	G	.	.	PASS	END=47276884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	47277845	.	C	.	.	LowGQX	END=47277860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47277861	.	C	.	.	LowGQX	.	GT	./.
chr1	47277862	.	C	.	.	LowGQX	END=47277872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47277873	.	A	.	.	LowGQX	.	GT	./.
chr1	47277874	.	T	.	.	LowGQX	END=47277885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47277886	.	A	.	.	LowGQX	.	GT	./.
chr1	47277887	.	T	.	.	LowGQX	END=47277890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47277891	.	A	.	.	LowGQX	.	GT	./.
chr1	47277892	.	C	.	.	LowGQX	END=47277904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47277905	.	A	.	.	LowGQX	.	GT	./.
chr1	47277906	.	C	.	.	LowGQX	END=47277944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47278166	.	A	.	.	PASS	END=47278271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	47278272	.	A	.	.	PASS	END=47278285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	47278286	.	T	.	.	PASS	END=47278297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	47279152	.	A	.	.	PASS	END=47279246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	47279247	.	T	.	.	PASS	END=47279280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	47279579	.	A	.	.	PASS	END=47279597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	47279598	.	A	.	.	PASS	END=47279650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	47279651	.	C	.	.	PASS	END=47279718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	47279719	.	G	.	.	PASS	END=47279736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	47279737	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:94:99:60
chr1	47279879	.	A	.	.	PASS	END=47279969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	47279970	.	A	.	.	PASS	END=47279989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	47280733	.	T	.	.	PASS	END=47280787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	47280788	.	G	.	.	PASS	END=47280901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	47280902	.	C	.	.	PASS	END=47280940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	47282718	.	A	.	.	PASS	END=47282769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	47282770	.	T	.	.	PASS	END=47282825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	47282826	.	T	.	.	PASS	END=47282855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	47283620	.	C	.	.	PASS	END=47283663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	47283664	.	C	.	.	PASS	END=47283719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	47283795	.	C	.	.	PASS	END=47283876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	47283877	.	T	.	.	PASS	END=47283893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	47283894	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:101:99:60
chr1	47284301	.	A	.	.	PASS	END=47284334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	47284335	.	A	.	.	PASS	END=47284469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	47284470	.	C	.	.	PASS	END=47284488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	47395785	.	C	.	.	PASS	END=47395811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:56
chr1	47395812	.	G	.	.	PASS	END=47395885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:56
chr1	47395886	.	G	.	.	PASS	END=47395956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:57
chr1	47395957	.	T	.	.	PASS	END=47395972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	47395973	.	G	A	5080.77	PASS	DP=168;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=6.6812;MQ=60;MQ0=0;QD=30.24;SB=-1716.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,168:168:99:5081,379,0:60:99:1.000
chr1	47395974	.	A	.	.	PASS	END=47395984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	47398420	.	C	.	.	PASS	END=47398449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:59
chr1	47398450	.	G	.	.	PASS	END=47398519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:58
chr1	47398638	.	T	.	.	PASS	END=47398711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	47398712	.	C	.	.	PASS	END=47398737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	47399616	.	A	.	.	PASS	END=47399646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:55
chr1	47399647	.	G	.	.	PASS	END=47399685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:51
chr1	47399686	.	G	.	.	PASS	END=47399753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:42
chr1	47399846	.	A	.	.	PASS	END=47399891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:49
chr1	47399892	.	C	.	.	PASS	END=47399946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:45
chr1	47399947	.	A	.	.	PASS	END=47400004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:34
chr1	47400005	.	G	.	.	PASS	END=47400040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:29
chr1	47400123	.	A	.	.	PASS	END=47400167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:51
chr1	47400168	.	C	.	.	PASS	END=47400225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:50
chr1	47400226	.	C	.	.	PASS	END=47400233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:49
chr1	47400670	.	A	.	.	PASS	END=47400712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	47400713	.	C	.	.	PASS	END=47400812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	47400813	.	A	.	.	PASS	END=47400817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	47400818	.	T	.	.	PASS	END=47400828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	47401193	.	A	.	.	PASS	END=47401227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:45
chr1	47401228	.	G	.	.	PASS	END=47401252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:42
chr1	47401253	.	T	.	.	PASS	END=47401321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:38
chr1	47402334	.	A	.	.	PASS	END=47402440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:57
chr1	47402441	.	A	.	.	PASS	END=47402465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	47402947	.	G	.	.	PASS	END=47403046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	47403666	.	A	.	.	PASS	END=47403676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	47403677	.	C	.	.	PASS	END=47403704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:59
chr1	47403705	.	A	.	.	PASS	END=47403811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	47406909	.	A	.	.	PASS	END=47406936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	47406937	.	G	.	.	PASS	END=47406965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	47406966	.	G	.	.	PASS	END=47407061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	47407062	.	A	.	.	PASS	END=47407095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	47407096	.	A	.	.	PASS	END=47407107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	47427254	.	T	.	.	PASS	END=47427258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	47427259	.	T	.	.	PASS	END=47427270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	47427271	.	G	.	.	PASS	END=47427272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:96:60
chr1	47427273	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:35:21:60
chr1	47427274	.	T	.	.	PASS	END=47427288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	47427289	.	T	.	.	PASS	END=47427315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	47427316	.	G	.	.	PASS	END=47427331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	47427332	.	C	.	.	PASS	END=47427353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	47427354	.	T	.	.	PASS	END=47427428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	47489488	.	C	.	.	LowGQX	END=47489530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47489531	.	T	.	.	LowGQX	.	GT	./.
chr1	47489532	.	T	.	.	LowGQX	END=47489540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47489541	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	47489542	.	T	.	.	LowGQX	END=47489564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47489565	.	C	.	.	LowGQX	END=47489668	GT	./.
chr1	47495660	.	A	.	.	LowGQX	END=47495805	GT	./.
chr1	47497081	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47497082	.	T	.	.	LowGQX	.	GT	./.
chr1	47497083	.	T	.	.	LowGQX	END=47497092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47497093	.	T	.	.	LowGQX	.	GT	./.
chr1	47497094	.	G	.	.	LowGQX	END=47497095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47497096	.	T	.	.	LowGQX	.	GT	./.
chr1	47497097	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47497098	.	G	.	.	LowGQX	.	GT	./.
chr1	47497099	.	A	.	.	LowGQX	END=47497101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47497102	.	C	.	.	LowGQX	.	GT	./.
chr1	47497103	.	T	.	.	LowGQX	END=47497107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47497108	.	A	.	.	LowGQX	.	GT	./.
chr1	47497109	.	T	.	.	LowGQX	END=47497112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47497113	.	A	.	.	LowGQX	.	GT	./.
chr1	47497114	.	A	.	.	LowGQX	END=47497116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47497117	.	C	.	.	LowGQX	.	GT	./.
chr1	47497118	.	C	.	.	LowGQX	END=47497123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47497124	.	C	.	.	LowGQX	.	GT	./.
chr1	47497125	.	C	.	.	LowGQX	END=47497126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47497127	.	G	.	.	LowGQX	.	GT	./.
chr1	47497128	.	C	.	.	LowGQX	END=47497140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47497141	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	47497142	.	T	.	.	LowGQX	END=47497146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47497147	.	T	.	.	LowGQX	.	GT	./.
chr1	47497148	.	T	.	.	LowGQX	END=47497156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47497157	.	G	.	.	LowGQX	.	GT	./.
chr1	47497158	.	T	.	.	LowGQX	END=47497162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47497163	.	G	.	.	LowGQX	.	GT	./.
chr1	47497164	.	C	.	.	LowGQX	END=47497180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47498911	.	A	.	.	LowGQX	END=47498969	GT	./.
chr1	47498970	.	C	.	.	LowGQX	END=47499042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47501476	.	A	.	.	LowGQX	END=47501567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47501568	.	T	.	.	LowGQX	END=47501607	GT	./.
chr1	47501687	.	A	.	.	LowGQX	END=47501845	GT	./.
chr1	47504330	.	A	.	.	LowGQX	END=47504440	GT	./.
chr1	47505012	.	A	.	.	LowGQX	END=47505206	GT	./.
chr1	47512137	.	A	.	.	LowGQX	END=47512177	GT	./.
chr1	47512178	.	C	.	.	LowGQX	END=47512274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47514160	.	A	.	.	LowGQX	END=47514319	GT	./.
chr1	47515086	.	C	.	.	LowGQX	END=47515175	GT	./.
chr1	47515176	.	G	.	.	LowGQX	END=47515185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47515670	.	A	.	.	LowGQX	END=47515731	GT	./.
chr1	47515732	.	G	.	.	LowGQX	END=47515848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47533161	.	G	.	.	LowGQX	END=47533341	GT	./.
chr1	47534292	.	A	.	.	LowGQX	END=47534437	GT	./.
chr1	47546208	.	A	.	.	LowGQX	END=47546367	GT	./.
chr1	47548004	.	A	.	.	LowGQX	END=47548135	GT	./.
chr1	47550290	.	A	.	.	LowGQX	END=47550300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	47550301	.	G	.	.	LowGQX	END=47550418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:54
chr1	47550494	.	A	.	.	LowGQX	END=47550519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47550520	.	A	.	.	LowGQX	END=47550683	GT	./.
chr1	47560236	.	A	.	.	LowGQX	END=47560353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47560354	.	A	.	.	LowGQX	.	GT	./.
chr1	47560355	.	A	.	.	LowGQX	END=47560367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47560368	.	T	.	.	LowGQX	.	GT	./.
chr1	47560369	.	T	.	.	LowGQX	END=47560377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47560378	.	T	.	.	LowGQX	.	GT	./.
chr1	47560379	.	A	.	.	LowGQX	END=47560395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47564744	.	A	.	.	LowGQX	END=47564958	GT	./.
chr1	47571798	.	A	.	.	LowGQX	END=47571817	GT	./.
chr1	47571818	.	G	.	.	LowGQX	END=47571935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47581129	.	A	.	.	LowGQX	END=47581130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47581131	.	G	.	.	LowGQX	END=47581132	GT	./.
chr1	47581133	.	A	.	.	LowGQX	END=47581136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47581137	.	G	.	.	LowGQX	END=47581139	GT	./.
chr1	47581140	.	A	.	.	LowGQX	END=47581163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47581164	.	C	.	.	LowGQX	.	GT	./.
chr1	47581165	.	T	.	.	LowGQX	END=47581224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47581225	.	G	.	.	LowGQX	.	GT	./.
chr1	47581226	.	G	.	.	LowGQX	END=47581238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47581239	.	A	.	.	LowGQX	END=47581283	GT	./.
chr1	47582314	.	C	.	.	LowGQX	END=47582366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47582367	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	47582368	.	A	.	.	LowGQX	END=47582413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	47583436	.	A	.	.	LowGQX	END=47583438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47583439	.	A	.	.	LowGQX	.	GT	./.
chr1	47583440	.	A	.	.	LowGQX	END=47583442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47583443	.	G	.	.	LowGQX	END=47583444	GT	./.
chr1	47583445	.	A	.	.	LowGQX	END=47583446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47583447	.	T	.	.	LowGQX	END=47583542	GT	./.
chr1	47583543	.	T	.	.	LowGQX	END=47583544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47583545	.	T	.	.	LowGQX	.	GT	./.
chr1	47583546	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47583547	.	C	.	.	LowGQX	.	GT	./.
chr1	47583548	.	G	.	.	LowGQX	END=47583552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47583553	.	G	.	.	LowGQX	.	GT	./.
chr1	47583554	.	T	.	.	LowGQX	END=47583558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47583559	.	C	.	.	LowGQX	.	GT	./.
chr1	47583560	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47583561	.	C	.	.	LowGQX	END=47583562	GT	./.
chr1	47583563	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47583564	.	G	.	.	LowGQX	END=47583567	GT	./.
chr1	47583568	.	A	.	.	LowGQX	END=47583571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47583572	.	A	.	.	LowGQX	.	GT	./.
chr1	47583573	.	T	.	.	LowGQX	END=47583576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47583577	.	A	.	.	LowGQX	END=47583579	GT	./.
chr1	47583580	.	C	.	.	LowGQX	END=47583588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47583589	.	G	.	.	LowGQX	END=47583590	GT	./.
chr1	47583591	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47583592	.	A	.	.	LowGQX	END=47583594	GT	./.
chr1	47583595	.	A	.	.	LowGQX	END=47583596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47583597	.	A	.	.	LowGQX	.	GT	./.
chr1	47583598	.	G	.	.	LowGQX	END=47583599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47583600	.	T	.	.	LowGQX	.	GT	./.
chr1	47583601	.	T	.	.	LowGQX	END=47583604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47583605	.	A	.	.	LowGQX	END=47583606	GT	./.
chr1	47583607	.	T	.	.	LowGQX	END=47583608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47603156	.	C	.	.	PASS	END=47603187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	47603188	.	C	.	.	PASS	END=47603315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	47603316	.	C	.	.	PASS	END=47603353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	47603354	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:152:99:60
chr1	47606450	.	A	.	.	PASS	END=47606492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	47606493	.	G	.	.	PASS	END=47606561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:59
chr1	47606562	.	T	.	.	PASS	END=47606586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:59
chr1	47606587	.	A	.	.	PASS	END=47606595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	47607216	.	C	.	.	PASS	END=47607292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	47607293	.	T	.	.	PASS	END=47607313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	47607314	.	C	.	.	PASS	END=47607315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	47607778	.	A	.	.	PASS	END=47607808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:57
chr1	47607809	.	A	.	.	PASS	END=47607850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:54
chr1	47607851	.	A	T	4944.02	PASS	BaseQRankSum=2.487;DP=190;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=12.3604;MQ=54;MQ0=0;MQRankSum=-0.571;QD=26.02;ReadPosRankSum=0.910;SB=-3030.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:3,187:190:99:4944,331,0:54:99:0.984
chr1	47607852	.	A	.	.	PASS	END=47607909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:49
chr1	47608939	.	A	.	.	PASS	END=47609026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:40
chr1	47609027	.	G	.	.	PASS	END=47609048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:45
chr1	47609049	.	A	.	.	PASS	END=47609067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:46
chr1	47609432	.	A	.	.	PASS	END=47609466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	47609467	.	C	.	.	PASS	END=47609559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	47609560	.	C	.	.	PASS	END=47609590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	47610027	.	A	.	.	PASS	END=47610059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:51
chr1	47610060	.	A	.	.	PASS	END=47610137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:54
chr1	47610220	.	A	.	.	PASS	END=47610333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:39
chr1	47610334	.	T	.	.	PASS	END=47610390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:49
chr1	47610391	.	G	.	.	PASS	END=47610414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:48
chr1	47610456	.	G	.	.	PASS	END=47610574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:39
chr1	47610575	.	G	.	.	PASS	END=47610617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:51
chr1	47610618	.	C	.	.	PASS	END=47610637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:55
chr1	47610638	.	C	.	.	PASS	END=47610644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:58
chr1	47611521	.	T	.	.	PASS	END=47611620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	47611739	.	C	.	.	PASS	END=47611778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:59
chr1	47611779	.	T	.	.	PASS	END=47611832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:58
chr1	47611833	.	G	.	.	PASS	END=47611838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:58
chr1	47614272	.	A	.	.	PASS	END=47614310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	47614311	.	A	.	.	PASS	END=47614432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:56
chr1	47614433	.	G	.	.	PASS	END=47614452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:56
chr1	47614453	.	A	.	.	PASS	END=47614471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:55
chr1	47649630	.	G	.	.	LowGQX	END=47649729	GT	./.
chr1	47650672	.	A	.	.	LowGQX	END=47650674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47650675	.	T	G	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	47650676	.	G	.	.	LowGQX	END=47650720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47650721	.	G	.	.	LowGQX	.	GT	./.
chr1	47650722	.	A	.	.	LowGQX	END=47650726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47650727	.	A	.	.	LowGQX	.	GT	./.
chr1	47650728	.	T	.	.	LowGQX	END=47650742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47650743	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	47650744	.	C	.	.	LowGQX	END=47650771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47652989	.	A	.	.	LowGQX	END=47653039	GT	./.
chr1	47653040	.	G	.	.	LowGQX	END=47653041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47653042	.	A	.	.	LowGQX	.	GT	./.
chr1	47653043	.	C	.	.	LowGQX	END=47653101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47655522	.	T	.	.	LowGQX	END=47655621	GT	./.
chr1	47685055	.	T	.	.	LowGQX	END=47685069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	47685070	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	47685071	.	T	.	.	LowGQX	END=47685075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	47685076	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	47685077	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	47685078	.	C	.	.	LowGQX	END=47685086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	47685087	.	A	.	.	LowGQX	END=47685089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	47685090	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	47685091	.	G	.	.	LowGQX	END=47685096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	47685097	.	A	.	.	LowGQX	END=47685098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	47685099	.	A	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	47685100	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	47685101	.	C	.	.	LowGQX	END=47685104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	47685105	.	A	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	47685106	.	G	.	.	LowGQX	END=47685110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	47685111	.	T	.	.	LowGQX	END=47685113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	47685114	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	47685115	.	T	.	.	LowGQX	END=47685116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	47685117	.	G	.	.	LowGQX	END=47685120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	47685121	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	47685122	.	G	.	.	LowGQX	END=47685124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	47685125	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	47685126	.	T	.	.	LowGQX	END=47685130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	47685131	.	A	.	.	LowGQX	END=47685133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	47685134	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	47685135	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	47685136	.	G	.	.	LowGQX	END=47685138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	47685139	.	A	.	.	LowGQX	END=47685140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	47685141	.	G	.	.	LowGQX	END=47685143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	47685144	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	47685145	.	G	.	.	LowGQX	END=47685146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	47685147	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	47685148	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	47685149	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:2:60
chr1	47685150	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	47685151	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	47685152	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	47685153	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr1	47685154	.	G	.	.	PASS	END=47685157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	47685158	.	T	.	.	LowGQX	END=47685161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	47685162	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:36:60
chr1	47685163	.	A	.	.	LowGQX	END=47685164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	47685165	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	47685166	.	A	.	.	LowGQX	END=47685167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	47685168	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	47685169	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	47685170	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	47685171	.	T	.	.	LowGQX	END=47685172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	47685173	.	C	.	.	PASS	END=47685174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	47685175	.	T	.	.	LowGQX	END=47685177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	47685178	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	47685179	.	A	.	.	LowGQX	END=47685183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	47685184	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	47685185	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	47685186	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	47685187	.	C	.	.	LowGQX	END=47685190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	47685191	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	47685192	.	T	.	.	LowGQX	END=47685197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	47685198	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	47685199	.	T	.	.	LowGQX	END=47685202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	47685203	.	C	.	.	LowGQX	END=47685207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	47685208	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	47685209	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	47685210	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:9:60
chr1	47685211	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	47685212	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	47685213	.	A	.	.	LowGQX	END=47685216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	47685217	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	47685218	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	47685219	.	C	.	.	PASS	END=47685223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	47685224	.	A	.	.	LowGQX	END=47685225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	47685226	.	G	.	.	PASS	END=47685228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	47685229	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	47685230	.	G	.	.	PASS	END=47685231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	47685232	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	47685233	.	C	.	.	PASS	END=47685234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	47685235	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	47685236	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	47685237	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	47685238	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	47685239	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr1	47685240	.	C	.	.	PASS	END=47685244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	47685245	.	A	.	.	PASS	END=47685246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	47685247	.	G	.	.	PASS	END=47685252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	47685253	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:12:60
chr1	47685254	.	C	.	.	PASS	END=47685265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	47685266	.	A	.	.	PASS	END=47685267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	47685268	.	C	.	.	PASS	END=47685289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	47685290	.	C	.	.	PASS	END=47685300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	47685301	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:45:60
chr1	47685302	.	G	.	.	PASS	END=47685309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	47685310	.	A	.	.	PASS	END=47685320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	47685321	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:30:60
chr1	47685322	.	C	.	.	PASS	END=47685327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	47685328	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:60
chr1	47685329	.	T	.	.	PASS	END=47685336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	47685337	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:75:60
chr1	47685338	.	C	.	.	PASS	END=47685348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	47685349	.	G	.	.	PASS	END=47685375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	47685376	.	T	.	.	PASS	END=47685406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	47685407	.	T	.	.	PASS	END=47685431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	47685432	.	G	.	.	PASS	END=47685454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	47685455	.	T	C	5312.37	PASS	DP=176;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=14.3093;MQ=60;MQ0=0;QD=30.18;SB=-1646.34	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,174:176:99:5312,409,0:60:99:1.000
chr1	47685456	.	T	.	.	PASS	END=47685473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	47685474	.	G	.	.	PASS	END=47685566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr1	47685567	.	C	.	.	PASS	END=47685580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	47685581	.	A	.	.	PASS	END=47685610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	47685611	.	G	.	.	PASS	END=47685658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	47685659	.	G	.	.	PASS	END=47685784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	47685785	.	C	.	.	PASS	END=47685829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	47685830	.	A	.	.	PASS	END=47685846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	47685847	.	C	.	.	PASS	END=47685848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	47689674	.	A	.	.	PASS	END=47689702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	47689703	.	A	.	.	PASS	END=47689775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	47689776	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:74:99:60
chr1	47691102	.	C	.	.	PASS	END=47691122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	47691123	.	A	.	.	PASS	END=47691135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	47691136	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:66:60
chr1	47691137	.	G	.	.	PASS	END=47691138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:87:60
chr1	47691139	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:48:60
chr1	47691140	.	T	.	.	PASS	END=47691153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	47691154	.	A	.	.	PASS	END=47691170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	47691171	.	G	.	.	PASS	END=47691172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:39:60
chr1	47691173	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:2:60
chr1	47691174	.	G	.	.	PASS	END=47691198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	47691199	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	47691200	.	G	.	.	PASS	END=47691201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	47691202	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	47691203	.	G	.	.	PASS	END=47691204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	47691205	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	47691206	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	47691207	.	C	.	.	LowGQX	END=47691216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	47691217	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr1	47691218	.	C	.	.	LowGQX	END=47691228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	47691229	.	T	.	.	LowGQX	END=47691230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	47691231	.	C	.	.	LowGQX	END=47691235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	47691236	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	47691237	.	A	.	.	LowGQX	END=47691240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	47691241	.	G	.	.	LowGQX	END=47691245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	47691246	.	G	.	.	LowGQX	END=47691259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	47691260	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	47691261	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	47691262	.	G	.	.	LowGQX	END=47691273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	47691274	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	47691275	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	47691276	.	T	.	.	PASS	END=47691282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	47691283	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:27:60
chr1	47691284	.	G	.	.	PASS	END=47691297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	47691298	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:60
chr1	47691299	.	C	.	.	PASS	END=47691333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	47691334	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr1	47691335	.	C	.	.	PASS	END=47691336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	47691337	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:27:60
chr1	47691338	.	T	.	.	PASS	END=47691361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	47691362	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:48:60
chr1	47691363	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:27:60
chr1	47691364	.	C	.	.	PASS	END=47691386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	47691387	.	T	.	.	PASS	END=47691390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:60
chr1	47691391	.	C	.	.	PASS	END=47691399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	47691400	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:30:60
chr1	47691401	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	47691402	.	T	.	.	PASS	END=47691404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:36:60
chr1	47691405	.	G	.	.	PASS	END=47691407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	47691408	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:57:60
chr1	47691409	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chr1	47691410	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:54:60
chr1	47691411	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:39:60
chr1	47691412	.	G	.	.	PASS	END=47691417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	47691418	.	T	.	.	PASS	END=47691434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	47691435	.	G	.	.	PASS	END=47691463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	47691464	.	G	.	.	PASS	END=47691467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	47691468	.	C	.	.	PASS	END=47691508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	47691509	.	C	.	.	PASS	END=47691510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	47691511	.	T	.	.	PASS	END=47691514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	47691515	.	G	.	.	PASS	END=47691525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	47691526	.	C	.	.	PASS	END=47691530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	47691531	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:69:60
chr1	47691532	.	G	.	.	PASS	END=47691537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	47691538	.	T	.	75.13	PASS	DP=33;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:25:33:45.14:60:45
chr1	47691539	.	C	.	.	PASS	END=47691541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	47691542	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:42:60
chr1	47691543	.	C	.	.	PASS	END=47691547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:60
chr1	47691548	.	G	.	.	PASS	END=47691550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	47691551	.	G	.	.	PASS	END=47691552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	47691553	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:42:60
chr1	47691554	.	C	.	.	PASS	END=47691563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	47691564	.	G	.	.	PASS	END=47691567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr1	47691568	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:87:60
chr1	47691568	.	GCAGA	G	700.53	PASS	BaseQRankSum=1.963;DP=37;FS=3.110;HRun=0;HaplotypeScore=135.6732;MQ=60;MQ0=0;MQRankSum=-0.051;QD=18.93;ReadPosRankSum=0.871;SB=-273.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:23,13:37:99:740,0,1249:60:99:0.361
chr1	47691569	.	C	.	78.12	PASS	DP=36;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:23:23:48.13:60:48
chr1	47691570	.	A	.	81.15	PASS	DP=35;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:21:22:51.15:60:51
chr1	47691571	.	G	.	81.16	PASS	DP=35;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:22:22:51.16:60:51
chr1	47716757	.	A	.	.	PASS	END=47716763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	47716764	.	G	.	.	PASS	END=47716777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	47716778	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:66:60
chr1	47716779	.	C	.	.	PASS	END=47716827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	47716828	.	G	.	.	PASS	END=47716859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	47716860	.	A	.	.	PASS	END=47716890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	47716891	.	T	.	.	PASS	END=47716953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	47716954	.	G	.	.	PASS	END=47716968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	47716969	.	C	.	.	PASS	END=47716989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	47716990	.	C	.	.	PASS	END=47717048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	47717049	.	T	.	.	PASS	END=47717151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	47717152	.	C	.	.	PASS	END=47717198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	47717199	.	C	.	.	PASS	END=47717260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	47717261	.	A	.	.	PASS	END=47717341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	47717342	.	A	.	.	PASS	END=47717390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	47717391	.	C	.	.	PASS	END=47717440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	47717441	.	C	.	.	PASS	END=47717498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	47717499	.	A	.	.	PASS	END=47717511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	47717512	.	T	.	.	PASS	END=47717517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	47717518	.	C	.	.	PASS	END=47717526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	47717527	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:53:60
chr1	47717528	.	A	.	.	PASS	END=47717550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	47717551	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:48:60
chr1	47717552	.	T	.	.	PASS	END=47717558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:57:60
chr1	47717559	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:45:60
chr1	47717560	.	A	.	.	PASS	END=47717570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	47717571	.	T	.	.	PASS	END=47717576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	47717577	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:12:60
chr1	47717578	.	T	.	.	PASS	END=47717582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	47717583	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:6:60
chr1	47717584	.	A	.	.	PASS	END=47717586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	47717587	.	C	.	.	PASS	END=47717593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	47717594	.	A	.	.	PASS	END=47717608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	47717609	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	47717610	.	T	.	.	PASS	END=47717617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	47717618	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	47717619	.	A	.	.	PASS	END=47717645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	47725910	.	T	.	.	PASS	END=47725961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	47725962	.	T	.	.	PASS	END=47725967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	47725968	.	G	.	.	PASS	END=47725987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	47725988	.	T	.	.	PASS	END=47726026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	47726027	.	C	.	.	PASS	END=47726062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	47726063	.	T	.	.	PASS	END=47726086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	47726087	.	T	C	1486.84	PASS	BaseQRankSum=-2.315;DP=113;Dels=0.00;FS=2.486;HRun=0;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=2.645;QD=13.16;ReadPosRankSum=1.176;SB=-854.34	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:50,63:113:99:1517,0,1284:60:99:0.558
chr1	47726088	.	G	.	.	PASS	END=47726138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	47726139	.	T	.	.	PASS	END=47726164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	47726165	.	T	.	.	PASS	END=47726194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:91:60
chr1	47726195	.	A	.	.	PASS	END=47726211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	47726212	.	C	.	.	PASS	END=47726250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:59
chr1	47726251	.	T	.	.	PASS	END=47726252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:59
chr1	47728524	.	C	.	.	PASS	END=47728549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:98:60
chr1	47728550	.	G	.	.	PASS	END=47728566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	47728567	.	T	.	.	PASS	END=47728625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	47728626	.	T	.	.	PASS	END=47728705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	47728706	.	A	.	.	PASS	END=47728726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	47728727	.	G	.	.	PASS	END=47728769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	47728770	.	C	.	.	PASS	END=47728805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	47728806	.	T	.	.	PASS	END=47728820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	47728821	.	G	.	.	PASS	END=47728827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	47728828	.	T	.	.	PASS	END=47728839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	47735256	.	A	.	.	PASS	END=47735291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	47735292	.	T	.	.	PASS	END=47735330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	47735331	.	A	.	.	PASS	END=47735366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	47735367	.	C	.	.	PASS	END=47735493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	47735494	.	C	.	.	PASS	END=47735550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	47735551	.	T	.	.	PASS	END=47735589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	47737697	.	G	.	.	PASS	END=47737713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	47737714	.	A	.	.	PASS	END=47737750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	47737751	.	T	.	.	PASS	END=47737756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr1	47737757	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:27:60
chr1	47737758	.	A	.	.	PASS	END=47737771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr1	47737772	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:36:60
chr1	47737773	.	T	.	.	PASS	END=47737781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:66:60
chr1	47737782	.	G	.	.	PASS	END=47737791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:60
chr1	47737792	.	G	.	.	PASS	END=47737835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	47737836	.	A	.	.	PASS	END=47737858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	47737859	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:67:60
chr1	47737860	.	A	.	.	PASS	END=47737914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	47737915	.	T	.	.	PASS	END=47737943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	47737944	.	A	.	.	PASS	END=47737964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	47745862	.	A	.	.	PASS	END=47745872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	47745873	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:30:60
chr1	47745874	.	A	.	.	PASS	END=47745885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	47745886	.	A	.	.	PASS	END=47745903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	47745904	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:66:60
chr1	47745905	.	A	.	.	PASS	END=47745939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	47745940	.	G	.	.	PASS	END=47745978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	47745979	.	T	.	.	PASS	END=47746003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	47746004	.	G	.	.	PASS	END=47746016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	47746017	.	G	.	.	PASS	END=47746026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	47746027	.	T	.	.	PASS	END=47746045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr1	47746046	.	C	.	.	PASS	END=47746166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:265:99:60
chr1	47746167	.	C	.	.	PASS	END=47746178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	47746179	.	G	.	.	PASS	END=47746209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	47746210	.	A	.	.	PASS	END=47746291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	47746292	.	T	.	.	PASS	END=47746309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	47746310	.	T	.	.	PASS	END=47746363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	47746364	.	A	.	.	PASS	END=47746385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	47746386	.	C	.	.	PASS	END=47746418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	47746419	.	G	.	.	PASS	END=47746437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	47746438	.	A	.	.	PASS	END=47746459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	47746460	.	G	.	.	PASS	END=47746525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	47746526	.	A	.	.	PASS	END=47746573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	47746574	.	C	.	.	PASS	END=47746602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	47746603	.	A	.	.	PASS	END=47746770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	47746771	.	A	.	.	PASS	END=47746819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	47746820	.	T	.	.	PASS	END=47746829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	47746830	.	T	.	.	PASS	END=47746831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	47746832	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:63:60
chr1	47746833	.	C	.	.	PASS	END=47746860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	47746861	.	T	.	.	PASS	END=47746866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	47746867	.	T	.	.	PASS	END=47746882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	47746883	.	T	.	.	PASS	END=47746891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	47746892	.	G	.	.	PASS	END=47746893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	47746894	.	A	.	.	PASS	END=47746903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	47746904	.	A	.	.	PASS	END=47746923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	47746924	.	A	.	.	PASS	END=47746932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	47747966	.	A	.	.	PASS	END=47748015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:92:60
chr1	47748016	.	C	.	.	PASS	END=47748087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	47748088	.	G	.	.	PASS	END=47748114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	47748115	.	A	.	.	PASS	END=47748161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	47748162	.	C	.	.	PASS	END=47748182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	47753172	.	T	.	.	PASS	END=47753198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	47753199	.	C	.	.	PASS	END=47753292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	47753293	.	G	.	.	PASS	END=47753348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	47753349	.	C	.	.	PASS	END=47753383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	47755056	.	A	.	.	PASS	END=47755063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	47755064	.	A	.	.	PASS	END=47755082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	47755083	.	G	.	.	PASS	END=47755226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	47755227	.	T	.	.	PASS	END=47755307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	47755308	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:121:99:60
chr1	47759079	.	G	.	.	PASS	END=47759112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:96:60
chr1	47759113	.	A	.	.	PASS	END=47759195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	47759196	.	T	.	.	PASS	END=47759224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	47759225	.	A	.	.	PASS	END=47759261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	47759262	.	A	.	.	PASS	END=47759263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	47759264	.	A	.	.	PASS	END=47759267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	47761386	.	T	.	.	PASS	END=47761387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	47761388	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:60
chr1	47761389	.	A	.	.	PASS	END=47761413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	47761414	.	T	.	.	PASS	END=47761431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	47761432	.	C	.	.	PASS	END=47761524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	47761525	.	A	.	.	PASS	END=47761532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	47761533	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:57:60
chr1	47761534	.	A	.	.	PASS	END=47761539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	47761540	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:63:60
chr1	47761541	.	T	.	.	PASS	END=47761569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	47761570	.	C	.	.	PASS	END=47761571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	47765526	.	T	.	.	PASS	END=47765548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr1	47765549	.	C	.	.	PASS	END=47765575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	47765576	.	C	.	.	PASS	END=47765590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	47765591	.	C	.	.	PASS	END=47765643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	47765644	.	T	.	.	PASS	END=47765673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	47765674	.	T	.	.	PASS	END=47765741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	47765742	.	T	.	.	PASS	END=47765784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	47765785	.	A	.	.	PASS	END=47765813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	47765814	.	C	.	.	PASS	END=47765816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	47765817	.	T	.	.	PASS	END=47765824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	47765825	.	C	.	.	PASS	END=47765875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	47767182	.	A	.	.	PASS	END=47767206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	47767207	.	A	.	.	PASS	END=47767231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	47767232	.	C	.	.	PASS	END=47767250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	47767251	.	G	.	.	PASS	END=47767273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	47767274	.	T	.	.	PASS	END=47767385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	47767386	.	A	.	.	PASS	END=47767403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	47767404	.	T	.	.	PASS	END=47767445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	47767446	.	A	.	.	PASS	END=47767449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	47767450	.	A	.	.	PASS	END=47767457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	47767458	.	A	.	.	PASS	END=47767471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	47767855	.	C	.	.	PASS	END=47767862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	47767863	.	G	.	.	PASS	END=47767871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:81:60
chr1	47767872	.	C	.	.	PASS	END=47767913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	47767914	.	G	A	2201.08	PASS	DP=81;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=6.6812;MQ=60;MQ0=0;QD=27.17;SB=-881.06	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,81:81:99:2234,166,0:60:99:1.000
chr1	47767915	.	C	.	.	PASS	END=47768005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	47768006	.	A	.	.	PASS	END=47768062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	47768063	.	T	.	.	PASS	END=47768069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	47770510	.	T	.	.	PASS	END=47770518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	47770519	.	T	.	.	PASS	END=47770550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	47770551	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:60
chr1	47770552	.	A	.	.	PASS	END=47770574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	47770575	.	A	.	.	PASS	END=47770646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	47770647	.	T	.	.	PASS	END=47770652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	47770653	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:36:60
chr1	47770654	.	C	.	.	PASS	END=47770664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	47770665	.	A	.	.	PASS	END=47770711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	47770712	.	A	.	.	PASS	END=47770724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	47770725	.	T	.	.	PASS	END=47770743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	47770744	.	T	.	.	PASS	END=47770746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	47775897	.	C	.	.	PASS	END=47775950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	47775951	.	G	.	.	PASS	END=47775974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	47775975	.	G	.	.	PASS	END=47776042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	47799616	.	G	.	.	PASS	END=47799638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	47799639	.	G	C	2341.67	PASS	BaseQRankSum=-1.237;DP=77;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=10.4689;MQ=60;MQ0=0;MQRankSum=-0.787;QD=30.41;ReadPosRankSum=-0.067;SB=-489.20	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,76:77:99:2375,147,0:60:99:0.987
chr1	47799640	.	G	.	.	PASS	END=47799656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	47799657	.	G	.	.	PASS	END=47799692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	47799693	.	C	.	.	PASS	END=47799764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	47799765	.	A	.	.	PASS	END=47799790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	47823923	.	T	.	.	LowGQX	END=47824022	GT	./.
chr1	47834139	.	A	.	.	PASS	END=47834163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	47834164	.	T	.	.	PASS	END=47834289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	47838625	.	A	.	.	PASS	END=47838646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	47838647	.	T	.	.	PASS	END=47838704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	47838705	.	C	.	.	PASS	END=47838781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	47840570	.	T	.	.	PASS	END=47840583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	47840584	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:60:60
chr1	47840585	.	G	.	.	PASS	END=47840612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	47840613	.	G	.	.	PASS	END=47840669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	47840817	.	G	.	.	PASS	END=47840835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	47840836	.	C	.	.	PASS	END=47840954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:84:60
chr1	47840955	.	C	.	.	PASS	END=47840967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	47842347	.	A	.	.	PASS	END=47842420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	47842421	.	T	.	.	PASS	END=47842430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	47842431	.	G	A	4133.89	PASS	DP=124;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=7.6281;MQ=60;MQ0=0;QD=33.34;SB=-1080.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,124:124:99:4134,316,0:60:99:1.000
chr1	47842432	.	G	.	.	PASS	END=47842446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	47881937	.	T	.	.	LowGQX	END=47881940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	47881941	.	C	T	4.59	LowGQX;LowQD	BaseQRankSum=0.198;DP=7;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-1.495;QD=0.66;ReadPosRankSum=1.495;SB=-27.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:5,2:7:32.73:33,0,108:60:5:0.286
chr1	47881942	.	G	.	.	LowGQX	END=47881952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:60
chr1	47881953	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr1	47881954	.	C	.	.	LowGQX	END=47881972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	47881973	.	G	.	.	LowGQX	END=47882023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	47882024	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:60
chr1	47882025	.	T	.	.	LowGQX	END=47882042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	47882043	.	T	.	.	LowGQX	END=47882072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	47882073	.	C	.	.	LowGQX	END=47882093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	47882094	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	47882095	.	G	.	.	LowGQX	END=47882159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47882160	.	G	.	.	LowGQX	END=47882180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	47882181	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:21:60
chr1	47882182	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	47882183	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:19:60
chr1	47882184	.	C	.	.	PASS	END=47882192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	47882193	.	G	.	.	PASS	END=47882198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	47882199	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	47882200	.	G	.	.	PASS	END=47882205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	47882206	.	C	.	.	PASS	END=47882208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	47882209	.	C	.	.	PASS	END=47882233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	47882234	.	G	.	.	PASS	END=47882258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	47882259	.	G	.	.	PASS	END=47882282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	47882283	.	G	.	.	PASS	END=47882383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	47882384	.	C	.	.	PASS	END=47882433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	47882434	.	C	.	.	PASS	END=47882468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	47882469	.	T	.	.	PASS	END=47882493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	47882494	.	C	.	.	PASS	END=47882496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	47882497	.	C	T	641.03	PASS	BaseQRankSum=0.928;DP=56;Dels=0.00;FS=1.484;HRun=0;HaplotypeScore=9.4692;MQ=60;MQ0=0;MQRankSum=0.238;QD=11.45;ReadPosRankSum=-2.785;SB=-93.88	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,26:56:99:671,0,804:60:99:0.464
chr1	47882498	.	G	.	.	PASS	END=47882509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	47882510	.	C	.	.	PASS	END=47882530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	47882531	.	C	.	.	PASS	END=47882552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	47882553	.	C	.	.	PASS	END=47882557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:57:60
chr1	47882558	.	T	.	.	PASS	END=47882563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	47882564	.	C	.	.	LowGQX	END=47882565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	47882566	.	C	.	.	LowGQX	END=47882629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	47882630	.	C	.	.	LowGQX	END=47882653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	47882654	.	G	.	.	LowGQX	END=47882687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:60
chr1	47882688	.	C	.	.	LowGQX	END=47882739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:60
chr1	47882740	.	G	.	.	LowGQX	END=47882767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:60
chr1	47882768	.	C	.	.	PASS	END=47882797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	47882798	.	C	.	.	PASS	END=47882830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chr1	47882831	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:60
chr1	47882832	.	C	.	.	PASS	END=47882835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chr1	47882836	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:0:60
chr1	47882837	.	G	.	.	PASS	END=47882851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	47882852	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	47882853	.	T	.	.	PASS	END=47882857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	47882858	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	47882859	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	47882860	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	47882861	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	47882862	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:0:60
chr1	47882863	.	G	.	.	LowGQX	END=47882866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:27:60
chr1	47882867	.	G	.	.	PASS	END=47882871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	47882872	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:60
chr1	47882873	.	C	.	.	PASS	END=47882875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	47882876	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr1	47882877	.	G	.	.	PASS	END=47882884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	47882885	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:24:60
chr1	47882886	.	G	.	.	PASS	END=47882894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:33:60
chr1	47882895	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	47882896	.	G	.	.	PASS	END=47882917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	47882918	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr1	47882919	.	T	.	.	PASS	END=47882926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	47882927	.	G	.	.	PASS	END=47882937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	47882938	.	C	.	.	PASS	END=47882946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	47882947	.	A	.	.	PASS	END=47882966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	47882967	.	G	.	.	PASS	END=47882968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chr1	47882969	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:21:60
chr1	47882970	.	C	.	.	PASS	END=47882978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:30:60
chr1	47882979	.	C	.	.	PASS	END=47882988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	47882989	.	G	.	.	PASS	END=47882990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:60
chr1	47882991	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:1:60
chr1	47882992	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr1	47882993	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:2:60
chr1	47882994	.	T	.	.	PASS	END=47882995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chr1	47882996	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:60
chr1	47882997	.	G	.	.	PASS	END=47882998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	47903795	.	C	.	.	LowGQX	END=47904123	GT	./.
chr1	47904124	.	G	.	.	LowGQX	END=47904126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	47904127	.	C	.	.	LowGQX	END=47904128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	47904129	.	G	.	.	LowGQX	END=47904138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	47904139	.	G	.	.	LowGQX	END=47904149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	47904150	.	C	.	.	PASS	END=47904167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	47904168	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:15:60
chr1	47904169	.	C	.	.	PASS	END=47904173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	47904174	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	47904175	.	G	.	.	PASS	END=47904181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	47904182	.	G	.	.	PASS	END=47904185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	47904186	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:3:60
chr1	47904187	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:33:60
chr1	47904188	.	G	.	.	PASS	END=47904190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	47904191	.	G	.	.	PASS	END=47904195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	47904196	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:72:60
chr1	47904197	.	C	.	.	PASS	END=47904211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	47904212	.	C	.	.	PASS	END=47904224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	47904225	.	A	.	.	PASS	END=47904236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	47904237	.	C	.	.	PASS	END=47904263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	47904264	.	A	.	.	PASS	END=47904381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	47904382	.	C	.	.	PASS	END=47904414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	47904415	.	T	.	.	PASS	END=47904443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	47904444	.	A	.	.	PASS	END=47904511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	47904512	.	G	.	.	PASS	END=47904527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	47904528	.	C	.	.	PASS	END=47904538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:77:60
chr1	47904539	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:60:60
chr1	47904540	.	G	.	.	PASS	END=47904549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	47904550	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:48:60
chr1	47904551	.	G	.	.	PASS	END=47904561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	47904562	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:96:60
chr1	47904563	.	T	.	.	PASS	END=47904565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	47904566	.	C	.	.	PASS	END=47904568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:93:60
chr1	47904569	.	C	.	.	PASS	END=47904570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:65:60
chr1	47904571	.	C	.	.	PASS	END=47904584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	47904585	.	T	.	.	PASS	END=47904608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	47904609	.	T	.	.	PASS	END=47904621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	47904622	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:33:60
chr1	47904623	.	G	.	.	PASS	END=47904625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	47904626	.	T	.	.	PASS	END=47904629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	47904630	.	C	.	.	PASS	END=47904635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	47904636	.	T	.	.	PASS	END=47904637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	47904638	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:3:60
chr1	47904639	.	G	.	.	PASS	END=47904657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	47904658	.	C	.	.	LowGQX	END=47904673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	47904674	.	C	.	.	LowGQX	END=47904676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	47904677	.	G	.	.	LowGQX	END=47904696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	47904697	.	T	.	.	LowGQX	END=47904711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47904712	.	C	.	.	LowGQX	END=47904957	GT	./.
chr1	47904958	.	C	.	.	LowGQX	END=47905054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47905055	.	C	.	.	LowGQX	.	GT	./.
chr1	47905056	.	A	.	.	LowGQX	END=47905084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47905085	.	A	.	.	LowGQX	.	GT	./.
chr1	47905086	.	C	.	.	LowGQX	END=47905092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47905093	.	G	.	.	LowGQX	.	GT	./.
chr1	47905094	.	C	.	.	LowGQX	END=47905121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47905122	.	T	.	.	LowGQX	.	GT	./.
chr1	47905123	.	T	.	.	LowGQX	END=47905138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47905139	.	T	.	.	LowGQX	.	GT	./.
chr1	47905140	.	C	.	.	LowGQX	END=47905167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47905168	.	T	.	.	LowGQX	.	GT	./.
chr1	47905169	.	G	.	.	LowGQX	END=47905173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47905174	.	C	.	.	LowGQX	.	GT	./.
chr1	47905175	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47905176	.	G	.	.	LowGQX	.	GT	./.
chr1	47905177	.	C	.	.	LowGQX	END=47905248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	47905249	.	C	.	.	LowGQX	END=47905305	GT	./.
chr1	48231502	.	G	.	.	LowGQX	END=48231533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48231534	.	T	.	.	LowGQX	END=48231841	GT	./.
chr1	48240841	.	C	.	.	LowGQX	END=48240872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240873	.	A	.	.	LowGQX	END=48240909	GT	./.
chr1	48240910	.	C	.	.	LowGQX	END=48240911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240912	.	A	.	.	LowGQX	.	GT	./.
chr1	48240913	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240914	.	T	.	.	LowGQX	END=48240915	GT	./.
chr1	48240916	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240917	.	C	.	.	LowGQX	END=48240921	GT	./.
chr1	48240922	.	C	.	.	LowGQX	END=48240924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240925	.	G	.	.	LowGQX	.	GT	./.
chr1	48240926	.	C	.	.	LowGQX	END=48240928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240929	.	A	.	.	LowGQX	END=48240930	GT	./.
chr1	48240931	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240932	.	T	.	.	LowGQX	.	GT	./.
chr1	48240933	.	C	.	.	LowGQX	END=48240934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240935	.	T	.	.	LowGQX	END=48240936	GT	./.
chr1	48240937	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240938	.	A	.	.	LowGQX	END=48240939	GT	./.
chr1	48240940	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240941	.	T	.	.	LowGQX	.	GT	./.
chr1	48240942	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240943	.	G	.	.	LowGQX	.	GT	./.
chr1	48240944	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240945	.	T	.	.	LowGQX	.	GT	./.
chr1	48240946	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240947	.	A	.	.	LowGQX	END=48240948	GT	./.
chr1	48240949	.	G	.	.	LowGQX	END=48240950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240951	.	T	.	.	LowGQX	.	GT	./.
chr1	48240952	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240953	.	T	.	.	LowGQX	.	GT	./.
chr1	48240954	.	C	.	.	LowGQX	END=48240957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240958	.	G	.	.	LowGQX	END=48240960	GT	./.
chr1	48240961	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240962	.	A	.	.	LowGQX	END=48240964	GT	./.
chr1	48240965	.	A	.	.	LowGQX	END=48240969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240970	.	T	.	.	LowGQX	.	GT	./.
chr1	48240971	.	G	.	.	LowGQX	END=48240973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240974	.	G	.	.	LowGQX	END=48240975	GT	./.
chr1	48240976	.	C	.	.	LowGQX	END=48240981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240982	.	T	.	.	LowGQX	.	GT	./.
chr1	48240983	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240984	.	G	.	.	LowGQX	.	GT	./.
chr1	48240985	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240986	.	T	.	.	LowGQX	.	GT	./.
chr1	48240987	.	C	.	.	LowGQX	END=48240988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240989	.	T	.	.	LowGQX	.	GT	./.
chr1	48240990	.	C	.	.	LowGQX	END=48240991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240992	.	T	.	.	LowGQX	.	GT	./.
chr1	48240993	.	C	.	.	LowGQX	END=48240994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240995	.	T	.	.	LowGQX	.	GT	./.
chr1	48240996	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48240997	.	T	.	.	LowGQX	END=48240998	GT	./.
chr1	48240999	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48241000	.	T	.	.	LowGQX	.	GT	./.
chr1	48241001	.	G	.	.	LowGQX	END=48241004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48241005	.	C	.	.	LowGQX	.	GT	./.
chr1	48241006	.	G	.	.	LowGQX	END=48241007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48241008	.	T	.	.	LowGQX	.	GT	./.
chr1	48241009	.	G	.	.	LowGQX	END=48241013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48241014	.	T	.	.	LowGQX	.	GT	./.
chr1	48241015	.	C	.	.	LowGQX	END=48241023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48241024	.	T	.	.	LowGQX	END=48241025	GT	./.
chr1	48241026	.	C	.	.	LowGQX	END=48241044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48241045	.	T	.	.	LowGQX	.	GT	./.
chr1	48241046	.	G	.	.	LowGQX	END=48241059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48241060	.	C	.	.	LowGQX	END=48241115	GT	./.
chr1	48244121	.	C	.	.	LowGQX	END=48244220	GT	./.
chr1	48260257	.	C	.	.	LowGQX	END=48260432	GT	./.
chr1	48267144	.	C	.	.	LowGQX	END=48267146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	48267147	.	G	.	.	LowGQX	.	GT	./.
chr1	48267148	.	G	.	.	LowGQX	END=48267151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	48267152	.	G	.	.	LowGQX	.	GT	./.
chr1	48267153	.	T	.	.	LowGQX	END=48267158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	48267159	.	G	.	.	LowGQX	.	GT	./.
chr1	48267160	.	G	.	.	LowGQX	END=48267162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	48267163	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	48267164	.	A	.	.	LowGQX	END=48267174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	48267175	.	G	.	.	LowGQX	.	GT	./.
chr1	48267176	.	C	.	.	LowGQX	END=48267206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	48267207	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	48267208	.	G	.	.	LowGQX	.	GT	./.
chr1	48267209	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	48267210	.	C	.	.	LowGQX	.	GT	./.
chr1	48267211	.	C	.	.	LowGQX	END=48267217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	48267218	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	48267219	.	T	.	.	LowGQX	END=48267226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	48267227	.	G	.	.	LowGQX	.	GT	./.
chr1	48267228	.	C	.	.	LowGQX	END=48267239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	48267240	.	C	.	.	LowGQX	END=48267241	GT	./.
chr1	48267242	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48267243	.	C	.	.	LowGQX	END=48267245	GT	./.
chr1	48267246	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48267247	.	C	.	.	LowGQX	.	GT	./.
chr1	48267248	.	A	.	.	LowGQX	END=48267252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48267253	.	C	.	.	LowGQX	.	GT	./.
chr1	48267254	.	T	.	.	LowGQX	END=48267257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48267258	.	G	.	.	LowGQX	.	GT	./.
chr1	48267259	.	C	.	.	LowGQX	END=48267261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48267262	.	C	.	.	LowGQX	.	GT	./.
chr1	48267263	.	A	.	.	LowGQX	END=48267272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48267273	.	G	.	.	LowGQX	.	GT	./.
chr1	48267274	.	G	.	.	LowGQX	END=48267277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48267278	.	A	.	.	LowGQX	END=48267291	GT	./.
chr1	48459705	.	C	.	.	LowGQX	END=48459802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	48459803	.	A	.	.	LowGQX	END=48460269	GT	./.
chr1	48462308	.	G	.	.	LowGQX	END=48462461	GT	./.
chr1	48688408	.	G	.	.	LowGQX	END=48688572	GT	./.
chr1	48690382	.	T	.	.	LowGQX	END=48690448	GT	./.
chr1	48690449	.	G	.	.	LowGQX	END=48690471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	48690472	.	G	.	.	LowGQX	.	GT	./.
chr1	48690473	.	T	.	.	LowGQX	END=48690481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	48694520	.	A	.	.	LowGQX	END=48694574	GT	./.
chr1	48694575	.	G	.	.	LowGQX	END=48694628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48694763	.	T	.	.	LowGQX	END=48694801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48694802	.	A	.	.	LowGQX	END=48694862	GT	./.
chr1	48694965	.	A	.	.	LowGQX	END=48695133	GT	./.
chr1	48696270	.	A	.	.	LowGQX	END=48696379	GT	./.
chr1	48697208	.	G	.	.	LowGQX	END=48697307	GT	./.
chr1	48697616	.	A	.	.	LowGQX	END=48697825	GT	./.
chr1	48698037	.	A	.	.	LowGQX	END=48698176	GT	./.
chr1	48699325	.	A	.	.	LowGQX	END=48699406	GT	./.
chr1	48699407	.	A	.	.	LowGQX	END=48699408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48699409	.	G	.	.	LowGQX	.	GT	./.
chr1	48699410	.	T	.	.	LowGQX	END=48699420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48699421	.	C	.	.	LowGQX	.	GT	./.
chr1	48699422	.	C	.	.	LowGQX	END=48699436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48701399	.	A	.	.	LowGQX	END=48701553	GT	./.
chr1	48703349	.	A	.	.	LowGQX	END=48703353	GT	./.
chr1	48703354	.	G	.	.	LowGQX	END=48703392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48703393	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	48703394	.	C	.	.	LowGQX	END=48703415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	48703416	.	G	.	.	LowGQX	.	GT	./.
chr1	48703417	.	T	.	.	LowGQX	END=48703521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48704992	.	A	.	.	LowGQX	END=48705211	GT	./.
chr1	48707604	.	C	.	.	LowGQX	END=48707703	GT	./.
chr1	48708127	.	A	.	.	LowGQX	END=48708290	GT	./.
chr1	48713005	.	A	.	.	LowGQX	END=48713051	GT	./.
chr1	48713052	.	G	.	.	LowGQX	END=48713061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48713062	.	A	.	.	LowGQX	.	GT	./.
chr1	48713063	.	A	.	.	LowGQX	END=48713064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48713065	.	A	.	.	LowGQX	.	GT	./.
chr1	48713066	.	C	.	.	LowGQX	END=48713069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48713070	.	A	.	.	LowGQX	.	GT	./.
chr1	48713071	.	G	.	.	LowGQX	END=48713080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48713081	.	A	.	.	LowGQX	.	GT	./.
chr1	48713082	.	G	.	.	LowGQX	END=48713085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48713086	.	A	.	.	LowGQX	.	GT	./.
chr1	48713087	.	G	.	.	LowGQX	END=48713090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48713091	.	A	.	.	LowGQX	.	GT	./.
chr1	48713092	.	G	.	.	LowGQX	END=48713093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48713094	.	A	.	.	LowGQX	.	GT	./.
chr1	48713095	.	G	.	.	LowGQX	END=48713101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48713102	.	C	.	.	LowGQX	.	GT	./.
chr1	48713103	.	T	.	.	LowGQX	END=48713105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48713106	.	A	.	.	LowGQX	END=48713107	GT	./.
chr1	48713108	.	C	.	.	LowGQX	END=48713110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48713111	.	A	.	.	LowGQX	END=48713112	GT	./.
chr1	48713113	.	G	.	.	LowGQX	END=48713116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48713117	.	A	.	.	LowGQX	.	GT	./.
chr1	48713118	.	C	.	.	LowGQX	END=48713119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48713120	.	A	.	.	LowGQX	.	GT	./.
chr1	48713121	.	G	.	.	LowGQX	END=48713123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48713124	.	T	.	.	LowGQX	.	GT	./.
chr1	48713125	.	T	.	.	LowGQX	END=48713132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48713133	.	A	.	.	LowGQX	.	GT	./.
chr1	48713134	.	G	.	.	LowGQX	END=48713136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48713137	.	A	.	.	LowGQX	.	GT	./.
chr1	48713138	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48713139	.	T	.	.	LowGQX	.	GT	./.
chr1	48713140	.	C	.	.	LowGQX	END=48713143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48713144	.	A	.	.	LowGQX	.	GT	./.
chr1	48713145	.	G	.	.	LowGQX	END=48713177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48713178	.	T	.	.	LowGQX	.	GT	./.
chr1	48713179	.	G	.	.	LowGQX	END=48713215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48713216	.	T	.	.	LowGQX	.	GT	./.
chr1	48713217	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48764383	.	T	.	.	LowGQX	END=48764567	GT	./.
chr1	48771455	.	A	.	.	LowGQX	END=48771554	GT	./.
chr1	48821340	.	A	.	.	LowGQX	END=48821443	GT	./.
chr1	48825256	.	A	.	.	LowGQX	END=48825444	GT	./.
chr1	48850952	.	A	.	.	LowGQX	END=48851051	GT	./.
chr1	48860933	.	G	.	.	LowGQX	END=48861032	GT	./.
chr1	48865021	.	A	.	.	LowGQX	END=48865051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48865052	.	T	.	.	LowGQX	.	GT	./.
chr1	48865053	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48865054	.	T	.	.	LowGQX	.	GT	./.
chr1	48865055	.	C	.	.	LowGQX	END=48865057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48865058	.	T	.	.	LowGQX	END=48865059	GT	./.
chr1	48865060	.	T	.	.	LowGQX	END=48865061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48865062	.	G	.	.	LowGQX	.	GT	./.
chr1	48865063	.	A	.	.	LowGQX	END=48865080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48865081	.	T	.	.	LowGQX	.	GT	./.
chr1	48865082	.	T	.	.	LowGQX	END=48865087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48865088	.	G	.	.	LowGQX	.	GT	./.
chr1	48865089	.	G	.	.	LowGQX	END=48865112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48865113	.	A	.	.	LowGQX	.	GT	./.
chr1	48865114	.	G	.	.	LowGQX	END=48865127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48865128	.	G	.	.	LowGQX	.	GT	./.
chr1	48865129	.	C	.	.	LowGQX	END=48865130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48865131	.	T	.	.	LowGQX	.	GT	./.
chr1	48865132	.	C	.	.	LowGQX	END=48865152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48865153	.	G	.	.	LowGQX	.	GT	./.
chr1	48865154	.	A	.	.	LowGQX	END=48865155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48865156	.	T	.	.	LowGQX	.	GT	./.
chr1	48865157	.	G	.	.	LowGQX	END=48865163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48865164	.	T	.	.	LowGQX	END=48865165	GT	./.
chr1	48865166	.	A	.	.	LowGQX	END=48865171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48865172	.	T	.	.	LowGQX	.	GT	./.
chr1	48865173	.	T	.	.	LowGQX	END=48865179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48865180	.	T	.	.	LowGQX	END=48865318	GT	./.
chr1	48866400	.	A	.	.	LowGQX	END=48866499	GT	./.
chr1	48869465	.	A	.	.	LowGQX	END=48869564	GT	./.
chr1	48877134	.	A	.	.	LowGQX	END=48877262	GT	./.
chr1	48878693	.	A	.	.	LowGQX	END=48878755	GT	./.
chr1	48878756	.	G	.	.	LowGQX	END=48878909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48917199	.	G	.	.	LowGQX	END=48917232	GT	./.
chr1	48917233	.	G	.	.	LowGQX	END=48917273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48917274	.	T	.	.	LowGQX	END=48917275	GT	./.
chr1	48917276	.	T	.	.	LowGQX	END=48917298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	48918664	.	A	.	.	LowGQX	END=48918805	GT	./.
chr1	48937546	.	T	.	.	LowGQX	END=48937757	GT	./.
chr1	48999734	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:30:60
chr1	48999735	.	C	.	.	PASS	END=48999748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	48999749	.	A	.	.	PASS	END=48999762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	48999763	.	G	.	.	PASS	END=48999780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:69:60
chr1	48999781	.	A	.	.	PASS	END=48999798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	48999799	.	A	.	.	PASS	END=48999804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	48999805	.	A	.	.	PASS	END=48999807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:68:60
chr1	48999808	.	C	.	.	PASS	END=48999831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	48999832	.	G	.	.	PASS	END=48999869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	48999870	.	T	.	.	PASS	END=48999958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	48999959	.	T	.	.	PASS	END=48999965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	49000525	.	T	.	.	PASS	END=49000554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	49000555	.	T	.	.	PASS	END=49000624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	49005312	.	A	.	.	PASS	END=49005409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	49005410	.	T	.	.	PASS	END=49005411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	49052581	.	T	.	.	PASS	END=49052601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	49052602	.	T	.	.	PASS	END=49052624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:93:60
chr1	49052625	.	A	.	.	PASS	END=49052651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	49052652	.	A	.	.	PASS	END=49052678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	49052679	.	C	.	.	PASS	END=49052693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	49052694	.	G	.	.	PASS	END=49052814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	49052815	.	G	.	.	PASS	END=49052837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	49052838	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:161:99:60
chr1	49056504	.	C	.	.	PASS	END=49056562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	49056563	.	A	.	.	PASS	END=49056638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	49056639	.	A	.	.	PASS	END=49056657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	49100152	.	T	.	.	PASS	END=49100208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	49100209	.	G	.	.	PASS	END=49100276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	49113222	.	A	.	.	LowGQX	END=49113321	GT	./.
chr1	49119008	.	C	.	.	PASS	END=49119035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	49119036	.	G	.	.	PASS	END=49119069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	49119070	.	A	.	.	PASS	END=49119123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	49128819	.	C	.	.	PASS	END=49128850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	49128851	.	C	.	.	PASS	END=49128910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	49128911	.	T	.	.	PASS	END=49128918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	49193556	.	G	.	.	LowGQX	END=49193613	GT	./.
chr1	49193614	.	T	.	.	LowGQX	END=49193626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	49193627	.	T	.	.	LowGQX	.	GT	./.
chr1	49193628	.	T	.	.	LowGQX	END=49193717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	49201909	.	A	.	.	LowGQX	END=49202126	GT	./.
chr1	49208293	.	A	.	.	LowGQX	END=49208340	GT	./.
chr1	49208341	.	G	.	.	LowGQX	END=49208429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	49208430	.	A	.	.	LowGQX	.	GT	./.
chr1	49208431	.	T	.	.	LowGQX	END=49208445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	49224570	.	A	.	.	LowGQX	END=49224583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	49224584	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	49224585	.	C	.	.	LowGQX	END=49224589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	49224590	.	G	.	.	LowGQX	END=49224774	GT	./.
chr1	49224775	.	G	.	.	LowGQX	END=49224956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	49227008	.	C	.	.	LowGQX	END=49227119	GT	./.
chr1	49227120	.	G	.	.	LowGQX	END=49227142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	49242247	.	T	.	.	LowGQX	END=49242496	GT	./.
chr1	49242497	.	C	.	.	LowGQX	END=49242566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	49283835	.	A	.	.	LowGQX	END=49283934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	49332833	.	A	.	.	PASS	END=49332854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	49332855	.	C	.	.	PASS	END=49332932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	49511255	.	C	.	.	PASS	END=49511279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	49511280	.	A	.	.	PASS	END=49511336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	49511337	.	G	.	.	PASS	END=49511433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	49511434	.	C	.	.	PASS	END=49511472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	49711439	.	T	.	.	PASS	END=49711478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	49711479	.	T	.	.	PASS	END=49711538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	50162949	.	C	.	.	PASS	END=50163019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:90:60
chr1	50163020	.	A	.	.	PASS	END=50163037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	50163038	.	G	.	.	PASS	END=50163084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	50163085	.	A	.	.	PASS	END=50163109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	50317067	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:81:60
chr1	50317068	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:30:60
chr1	50317069	.	A	.	.	PASS	END=50317093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	50317094	.	A	.	.	PASS	END=50317102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	50317103	.	T	.	.	PASS	END=50317127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	50317128	.	T	.	.	PASS	END=50317193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	50331548	.	A	.	.	LowGQX	END=50331647	GT	./.
chr1	50460707	.	C	.	.	LowGQX	END=50460740	GT	./.
chr1	50460741	.	C	.	.	LowGQX	END=50460763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50460764	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	50460765	.	C	.	.	LowGQX	END=50460783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	50460784	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	50460785	.	A	.	.	LowGQX	END=50460829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	50460830	.	C	.	.	LowGQX	.	GT	./.
chr1	50460831	.	C	.	.	LowGQX	END=50460912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50460913	.	C	.	.	LowGQX	END=50461031	GT	./.
chr1	50489402	.	T	.	.	PASS	END=50489501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	50513796	.	C	.	.	LowGQX	END=50513895	GT	./.
chr1	50569618	.	C	.	.	LowGQX	END=50569717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50571986	.	G	.	.	LowGQX	END=50572085	GT	./.
chr1	50574817	.	A	.	.	LowGQX	END=50574843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50574844	.	C	.	.	LowGQX	.	GT	./.
chr1	50574845	.	A	.	.	LowGQX	END=50574873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50574874	.	G	.	.	LowGQX	.	GT	./.
chr1	50574875	.	G	.	.	LowGQX	END=50574879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50574880	.	A	.	.	LowGQX	END=50574916	GT	./.
chr1	50575575	.	G	.	.	LowGQX	END=50575591	GT	./.
chr1	50575592	.	T	.	.	LowGQX	END=50575595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50575596	.	T	.	.	LowGQX	.	GT	./.
chr1	50575597	.	C	.	.	LowGQX	END=50575649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50575650	.	G	.	.	LowGQX	.	GT	./.
chr1	50575651	.	G	.	.	LowGQX	END=50575670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50575671	.	A	.	.	LowGQX	.	GT	./.
chr1	50575672	.	G	.	.	LowGQX	END=50575674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50610149	.	A	.	.	LowGQX	END=50610234	GT	./.
chr1	50610235	.	A	.	.	LowGQX	END=50610248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50610384	.	T	.	.	LowGQX	END=50610506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50610507	.	T	.	.	LowGQX	.	GT	./.
chr1	50610508	.	C	.	.	LowGQX	END=50610512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50610627	.	A	.	.	LowGQX	END=50610871	GT	./.
chr1	50642759	.	A	.	.	LowGQX	END=50642866	GT	./.
chr1	50659435	.	A	.	.	LowGQX	END=50659592	GT	./.
chr1	50661231	.	A	.	.	LowGQX	END=50661460	GT	./.
chr1	50663072	.	T	.	.	LowGQX	END=50663171	GT	./.
chr1	50666479	.	A	.	.	LowGQX	END=50666578	GT	./.
chr1	50666579	.	G	.	.	LowGQX	END=50666643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50666644	.	C	.	.	LowGQX	.	GT	./.
chr1	50666645	.	T	.	.	LowGQX	END=50666770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50666771	.	T	.	.	LowGQX	.	GT	./.
chr1	50666772	.	C	.	.	LowGQX	END=50666807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50666808	.	G	.	.	LowGQX	END=50666852	GT	./.
chr1	50884336	.	C	.	.	LowGQX	END=50885195	GT	./.
chr1	50885196	.	T	.	.	LowGQX	END=50885218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50885219	.	A	.	.	LowGQX	.	GT	./.
chr1	50885220	.	C	.	.	LowGQX	END=50885237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50885238	.	T	.	.	LowGQX	.	GT	./.
chr1	50885239	.	C	.	.	LowGQX	END=50885242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50885243	.	G	.	.	LowGQX	.	GT	./.
chr1	50885244	.	T	.	.	LowGQX	END=50885256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50885257	.	A	.	.	LowGQX	.	GT	./.
chr1	50885258	.	G	.	.	LowGQX	END=50885267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50885268	.	A	.	.	LowGQX	.	GT	./.
chr1	50885269	.	C	.	.	LowGQX	END=50885280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50885281	.	A	.	.	LowGQX	END=50885282	GT	./.
chr1	50885283	.	G	.	.	LowGQX	END=50885296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50885297	.	G	.	.	LowGQX	.	GT	./.
chr1	50885298	.	T	.	.	LowGQX	END=50885306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50885307	.	T	.	.	LowGQX	.	GT	./.
chr1	50885308	.	C	.	.	LowGQX	END=50885310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50885311	.	G	.	.	LowGQX	END=50885312	GT	./.
chr1	50885313	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50885314	.	A	.	.	LowGQX	.	GT	./.
chr1	50885315	.	T	.	.	LowGQX	END=50885324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50885325	.	A	.	.	LowGQX	.	GT	./.
chr1	50885326	.	C	.	.	LowGQX	END=50885336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50885337	.	A	.	.	LowGQX	.	GT	./.
chr1	50885338	.	G	.	.	LowGQX	END=50885340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50885341	.	G	.	.	LowGQX	.	GT	./.
chr1	50885342	.	G	.	.	LowGQX	END=50885345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50885346	.	C	.	.	LowGQX	END=50885358	GT	./.
chr1	50885359	.	C	.	.	LowGQX	END=50885367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50885368	.	G	.	.	LowGQX	.	GT	./.
chr1	50885369	.	C	.	.	LowGQX	END=50885379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50885380	.	A	.	.	LowGQX	.	GT	./.
chr1	50885381	.	C	.	.	LowGQX	END=50885390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50885391	.	T	.	.	LowGQX	END=50885392	GT	./.
chr1	50885393	.	C	.	.	LowGQX	END=50885402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50885403	.	G	.	.	LowGQX	.	GT	./.
chr1	50885404	.	C	.	.	LowGQX	END=50885405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50885406	.	T	.	.	LowGQX	.	GT	./.
chr1	50886638	.	C	.	.	LowGQX	END=50886639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50886640	.	G	.	.	LowGQX	.	GT	./.
chr1	50886641	.	C	.	.	LowGQX	END=50886643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50886644	.	T	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	50886645	.	C	.	.	LowGQX	END=50886650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50886651	.	T	.	.	LowGQX	.	GT	./.
chr1	50886652	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50886653	.	A	.	.	LowGQX	.	GT	./.
chr1	50886654	.	G	.	.	LowGQX	END=50886665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50886666	.	A	.	.	LowGQX	.	GT	./.
chr1	50886667	.	G	.	.	LowGQX	END=50886671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50886672	.	T	.	.	LowGQX	.	GT	./.
chr1	50886673	.	C	.	.	LowGQX	END=50886677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50886678	.	T	.	.	LowGQX	.	GT	./.
chr1	50886679	.	C	.	.	LowGQX	END=50886695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50886696	.	T	.	.	LowGQX	END=50886697	GT	./.
chr1	50886698	.	C	.	.	LowGQX	END=50886707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50886708	.	T	.	.	LowGQX	.	GT	./.
chr1	50886709	.	C	.	.	LowGQX	END=50886741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50886742	.	A	.	.	LowGQX	END=50887217	GT	./.
chr1	50907104	.	G	.	.	LowGQX	END=50907203	GT	./.
chr1	50917758	.	C	.	.	LowGQX	END=50917865	GT	./.
chr1	50941134	.	A	.	.	LowGQX	END=50941184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	50941185	.	C	.	.	LowGQX	.	GT	./.
chr1	50941186	.	C	.	.	LowGQX	END=50941226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50941227	.	C	.	.	LowGQX	.	GT	./.
chr1	50941228	.	T	.	.	LowGQX	END=50941236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50941237	.	A	.	.	LowGQX	.	GT	./.
chr1	50941238	.	A	.	.	LowGQX	END=50941240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50941241	.	C	.	.	LowGQX	.	GT	./.
chr1	50941242	.	C	.	.	LowGQX	END=50941243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50941244	.	C	.	.	LowGQX	END=50941245	GT	./.
chr1	50941246	.	C	.	.	LowGQX	END=50941255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50941256	.	G	.	.	LowGQX	.	GT	./.
chr1	50941257	.	C	.	.	LowGQX	END=50941304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	50941305	.	T	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	50941306	.	C	.	.	LowGQX	END=50941341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50941342	.	G	.	.	LowGQX	.	GT	./.
chr1	50941343	.	C	.	.	LowGQX	END=50941353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	50956249	.	T	.	.	LowGQX	END=50956348	GT	./.
chr1	50957384	.	C	.	.	LowGQX	END=50957483	GT	./.
chr1	51001036	.	C	.	.	LowGQX	END=51001135	GT	./.
chr1	51005262	.	A	.	.	LowGQX	END=51005402	GT	./.
chr1	51032747	.	A	.	.	LowGQX	END=51032905	GT	./.
chr1	51048286	.	T	.	.	LowGQX	END=51048355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51048356	.	A	.	.	LowGQX	.	GT	./.
chr1	51048357	.	T	.	.	LowGQX	END=51048385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51049306	.	T	.	.	LowGQX	END=51049405	GT	./.
chr1	51050355	.	A	.	.	LowGQX	END=51050485	GT	./.
chr1	51061791	.	A	.	.	LowGQX	END=51061890	GT	./.
chr1	51077962	.	T	.	.	LowGQX	END=51078061	GT	./.
chr1	51121052	.	T	.	.	LowGQX	END=51121207	GT	./.
chr1	51171456	.	A	.	.	LowGQX	END=51171565	GT	./.
chr1	51180633	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51180634	.	T	.	.	LowGQX	.	GT	./.
chr1	51180635	.	T	.	.	LowGQX	END=51180650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51180651	.	G	.	.	LowGQX	.	GT	./.
chr1	51180652	.	T	.	.	LowGQX	END=51180656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51180657	.	G	.	.	LowGQX	.	GT	./.
chr1	51180658	.	A	.	.	LowGQX	END=51180681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	51180682	.	G	.	.	LowGQX	.	GT	./.
chr1	51180683	.	C	.	.	LowGQX	END=51180729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51180730	.	A	.	.	LowGQX	.	GT	./.
chr1	51180731	.	T	.	.	LowGQX	END=51180732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51204531	.	T	.	.	LowGQX	END=51204630	GT	./.
chr1	51210294	.	A	.	.	LowGQX	END=51210451	GT	./.
chr1	51253670	.	A	.	.	LowGQX	END=51253879	GT	./.
chr1	51267277	.	T	.	.	LowGQX	END=51267376	GT	./.
chr1	51323586	.	G	.	.	LowGQX	END=51323628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51323629	.	A	.	.	LowGQX	.	GT	./.
chr1	51323630	.	A	.	.	LowGQX	END=51323634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51323635	.	A	.	.	LowGQX	.	GT	./.
chr1	51323636	.	T	.	.	LowGQX	END=51323645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51323646	.	A	.	.	LowGQX	END=51323647	GT	./.
chr1	51323648	.	T	.	.	LowGQX	END=51323653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51323654	.	C	.	.	LowGQX	.	GT	./.
chr1	51323655	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51323656	.	A	.	.	LowGQX	END=51323681	GT	./.
chr1	51323682	.	T	.	.	LowGQX	END=51323685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51425412	.	G	.	.	LowGQX	END=51425418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	51425419	.	A	.	.	LowGQX	.	GT	./.
chr1	51425420	.	A	.	.	LowGQX	END=51425442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	51425443	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	51425444	.	A	.	.	LowGQX	END=51425464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51425465	.	G	.	.	LowGQX	.	GT	./.
chr1	51425466	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51425467	.	T	.	.	LowGQX	END=51425511	GT	./.
chr1	51435990	.	A	.	.	PASS	END=51436029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	51436030	.	G	.	.	PASS	END=51436043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	51436044	.	G	.	.	PASS	END=51436099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	51436100	.	A	.	.	PASS	END=51436177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	51436178	.	T	.	.	PASS	END=51436183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	51436184	.	A	.	.	PASS	END=51436209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	51436210	.	T	.	.	PASS	END=51436220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	51439514	.	C	.	.	LowGQX	END=51439515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr1	51439516	.	C	.	.	PASS	END=51439539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	51439540	.	T	.	.	PASS	END=51439572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	51439573	.	A	.	.	PASS	END=51439586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	51439587	.	A	.	.	PASS	END=51439592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	51439593	.	C	.	.	PASS	END=51439603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	51439604	.	C	.	.	PASS	END=51439608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	51439609	.	T	.	.	PASS	END=51439635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	51439636	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:46:60
chr1	51439637	.	C	.	.	PASS	END=51439640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	51439641	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:52:60
chr1	51439642	.	T	.	.	PASS	END=51439675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	51439676	.	G	.	.	PASS	END=51439688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	51439689	.	C	.	.	PASS	END=51439790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	51439791	.	T	.	.	PASS	END=51439816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	51439817	.	A	.	.	PASS	END=51439818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	51439819	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:70:60
chr1	51439820	.	A	.	.	PASS	END=51439838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	51439839	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr1	51439840	.	T	.	.	PASS	END=51439857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	51439858	.	T	.	.	PASS	END=51439870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	51439871	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:63:60
chr1	51439872	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:48:60
chr1	51439873	.	C	.	.	PASS	END=51439879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	51439880	.	A	.	.	PASS	END=51439881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	51439882	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:24:60
chr1	51439883	.	A	.	.	PASS	END=51439884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	51439885	.	T	.	.	PASS	END=51439887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	51439888	.	G	.	.	PASS	END=51439889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	51439890	.	T	.	.	PASS	END=51439894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	51439895	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:18:60
chr1	51439896	.	G	.	.	PASS	END=51439897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	51439898	.	C	.	.	PASS	END=51439901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	51439902	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:60
chr1	51439903	.	G	.	.	PASS	END=51439904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	51439905	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:21:60
chr1	51439906	.	G	.	.	PASS	END=51439910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	51439911	.	A	.	.	PASS	END=51439912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	51439913	.	G	.	.	PASS	END=51439917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	51439918	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:21:60
chr1	51439919	.	G	.	.	PASS	END=51439923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	51439924	.	A	.	.	PASS	END=51439926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	51439927	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	51439928	.	A	.	.	PASS	END=51439934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	51439935	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	51439936	.	T	.	.	PASS	END=51439941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	51439942	.	A	.	.	LowGQX	END=51439943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	51439944	.	C	.	.	PASS	END=51439945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	51439946	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr1	51439947	.	G	.	.	PASS	END=51439948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	51439949	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	51439950	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	51439951	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	51439952	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	51439953	.	G	.	.	LowGQX	END=51439955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	51439956	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	51439957	.	C	.	.	LowGQX	END=51439961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	51439962	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	51439963	.	C	.	.	LowGQX	END=51439969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	51439970	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	51439971	.	C	.	.	LowGQX	END=51439975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	51439976	.	T	.	.	LowGQX	END=51439982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	51439983	.	T	.	.	LowGQX	END=51439984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	51439985	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	51439986	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	51439987	.	C	.	.	LowGQX	END=51439993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	51567864	.	A	.	.	LowGQX	END=51567963	GT	./.
chr1	51578135	.	G	.	.	LowGQX	END=51578166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51578167	.	T	.	.	LowGQX	.	GT	./.
chr1	51578168	.	G	.	.	LowGQX	END=51578187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51578188	.	A	.	.	LowGQX	.	GT	./.
chr1	51578189	.	A	.	.	LowGQX	END=51578191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51578192	.	G	.	.	LowGQX	END=51578241	GT	./.
chr1	51584337	.	G	.	.	LowGQX	END=51584473	GT	./.
chr1	51611305	.	T	.	.	LowGQX	END=51611463	GT	./.
chr1	51613138	.	G	.	.	LowGQX	END=51613443	GT	./.
chr1	51702377	.	G	.	.	LowGQX	END=51702553	GT	./.
chr1	51735586	.	T	.	.	LowGQX	END=51735799	GT	./.
chr1	51736821	.	A	.	.	LowGQX	END=51736996	GT	./.
chr1	51753828	.	G	.	.	LowGQX	END=51753952	GT	./.
chr1	51754510	.	C	.	.	LowGQX	END=51754627	GT	./.
chr1	51755676	.	C	.	.	LowGQX	END=51755791	GT	./.
chr1	51756185	.	C	.	.	LowGQX	END=51756297	GT	./.
chr1	51760062	.	C	.	.	LowGQX	END=51760066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51760067	.	G	.	.	LowGQX	.	GT	./.
chr1	51760068	.	C	.	.	LowGQX	END=51760070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51760071	.	G	.	.	LowGQX	.	GT	./.
chr1	51760072	.	C	.	.	LowGQX	END=51760100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51760101	.	A	.	.	LowGQX	.	GT	./.
chr1	51760102	.	G	.	.	LowGQX	END=51760146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51760147	.	T	.	.	LowGQX	.	GT	./.
chr1	51760148	.	T	.	.	LowGQX	END=51760157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51760158	.	T	.	.	LowGQX	.	GT	./.
chr1	51760159	.	C	.	.	LowGQX	END=51760183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51761719	.	C	.	.	LowGQX	END=51761842	GT	./.
chr1	51767243	.	C	.	.	LowGQX	END=51767343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51767344	.	A	.	.	LowGQX	END=51767405	GT	./.
chr1	51767752	.	C	.	.	LowGQX	END=51768088	GT	./.
chr1	51768162	.	A	.	.	LowGQX	END=51768261	GT	./.
chr1	51768755	.	C	.	.	LowGQX	END=51768864	GT	./.
chr1	51770736	.	A	.	.	LowGQX	END=51770835	GT	./.
chr1	51771648	.	C	.	.	LowGQX	END=51771748	GT	./.
chr1	51774932	.	C	.	.	LowGQX	END=51775102	GT	./.
chr1	51776910	.	A	.	.	LowGQX	END=51777009	GT	./.
chr1	51777779	.	T	.	.	LowGQX	END=51777864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51777865	.	T	.	.	LowGQX	END=51777878	GT	./.
chr1	51778483	.	C	.	.	LowGQX	END=51778615	GT	./.
chr1	51787392	.	C	.	.	LowGQX	END=51787461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51787462	.	T	.	.	LowGQX	END=51787497	GT	./.
chr1	51787762	.	A	.	.	LowGQX	END=51787861	GT	./.
chr1	51796019	.	C	.	.	LowGQX	END=51796178	GT	./.
chr1	51796792	.	A	.	.	LowGQX	END=51796891	GT	./.
chr1	51808665	.	T	.	.	LowGQX	END=51808672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51808673	.	A	.	.	LowGQX	.	GT	./.
chr1	51808674	.	C	.	.	LowGQX	END=51808764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51810579	.	T	.	.	LowGQX	END=51810596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51810597	.	T	.	.	LowGQX	.	GT	./.
chr1	51810598	.	G	.	.	LowGQX	END=51810619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51810620	.	T	.	.	LowGQX	.	GT	./.
chr1	51810621	.	C	.	.	LowGQX	END=51810700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51810701	.	G	.	.	LowGQX	END=51810738	GT	./.
chr1	51822370	.	C	.	.	LowGQX	END=51822520	GT	./.
chr1	51826841	.	A	.	.	LowGQX	END=51827029	GT	./.
chr1	51829536	.	A	.	.	LowGQX	END=51829702	GT	./.
chr1	51831614	.	C	.	.	LowGQX	END=51831629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51831630	.	A	.	.	LowGQX	.	GT	./.
chr1	51831631	.	C	.	.	LowGQX	END=51831637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51831638	.	C	.	.	LowGQX	.	GT	./.
chr1	51831639	.	T	.	.	LowGQX	END=51831645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51831646	.	A	.	.	LowGQX	.	GT	./.
chr1	51831647	.	G	.	.	LowGQX	END=51831664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51831665	.	G	.	.	LowGQX	END=51831713	GT	./.
chr1	51860037	.	T	.	.	LowGQX	END=51860136	GT	./.
chr1	51864702	.	A	.	.	LowGQX	END=51864715	GT	./.
chr1	51864716	.	G	.	.	LowGQX	END=51864768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51864769	.	T	.	.	LowGQX	.	GT	./.
chr1	51864770	.	A	.	.	LowGQX	END=51864771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51864772	.	A	.	.	LowGQX	.	GT	./.
chr1	51864773	.	T	.	.	LowGQX	END=51864801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51864802	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	51864803	.	A	.	.	LowGQX	END=51864839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	51866558	.	A	.	.	LowGQX	END=51866657	GT	./.
chr1	51868103	.	T	.	.	LowGQX	END=51868180	GT	./.
chr1	51868181	.	A	.	.	LowGQX	END=51868202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51869089	.	A	.	.	LowGQX	END=51869206	GT	./.
chr1	51871575	.	A	.	.	LowGQX	END=51871782	GT	./.
chr1	51873805	.	A	.	.	LowGQX	END=51874006	GT	./.
chr1	51875205	.	A	.	.	LowGQX	END=51875394	GT	./.
chr1	51887456	.	A	.	.	LowGQX	END=51887628	GT	./.
chr1	51888865	.	A	.	.	LowGQX	END=51888964	GT	./.
chr1	51906012	.	T	.	.	LowGQX	END=51906111	GT	./.
chr1	51910559	.	A	.	.	LowGQX	END=51910587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51910588	.	T	.	.	LowGQX	END=51910719	GT	./.
chr1	51912630	.	A	.	.	LowGQX	END=51912714	GT	./.
chr1	51912715	.	A	.	.	LowGQX	END=51912724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51912725	.	G	.	.	LowGQX	.	GT	./.
chr1	51912726	.	T	.	.	LowGQX	END=51912732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51912733	.	G	.	.	LowGQX	END=51912734	GT	./.
chr1	51912735	.	A	.	.	LowGQX	END=51912746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51912747	.	A	.	.	LowGQX	END=51912748	GT	./.
chr1	51912749	.	T	.	.	LowGQX	END=51912761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51912762	.	C	.	.	LowGQX	.	GT	./.
chr1	51912763	.	A	.	.	LowGQX	END=51912765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51912766	.	G	.	.	LowGQX	.	GT	./.
chr1	51912767	.	G	.	.	LowGQX	END=51912770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51912771	.	C	.	.	LowGQX	.	GT	./.
chr1	51912772	.	A	.	.	LowGQX	END=51912776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51912777	.	A	.	.	LowGQX	.	GT	./.
chr1	51912778	.	C	.	.	LowGQX	END=51912779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51913713	.	C	.	.	LowGQX	END=51913812	GT	./.
chr1	51924151	.	G	.	.	LowGQX	END=51924392	GT	./.
chr1	51924393	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51924394	.	G	.	.	LowGQX	END=51924396	GT	./.
chr1	51924397	.	A	.	.	LowGQX	END=51924402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51924403	.	C	.	.	LowGQX	.	GT	./.
chr1	51924404	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51924405	.	T	.	.	LowGQX	.	GT	./.
chr1	51926743	.	A	.	.	LowGQX	END=51926842	GT	./.
chr1	51929343	.	A	.	.	LowGQX	END=51929472	GT	./.
chr1	51930916	.	T	.	.	LowGQX	END=51930940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51930941	.	C	.	.	LowGQX	.	GT	./.
chr1	51930942	.	C	.	.	LowGQX	END=51930946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51930947	.	G	.	.	LowGQX	.	GT	./.
chr1	51930948	.	G	.	.	LowGQX	END=51930954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51930955	.	G	.	.	LowGQX	.	GT	./.
chr1	51930956	.	C	.	.	LowGQX	END=51930979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51930980	.	A	.	.	LowGQX	.	GT	./.
chr1	51930981	.	A	.	.	LowGQX	END=51931015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51934083	.	C	.	.	LowGQX	END=51934242	GT	./.
chr1	51937336	.	A	.	.	LowGQX	END=51937435	GT	./.
chr1	51938526	.	A	.	.	LowGQX	END=51938596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	51938597	.	C	.	.	LowGQX	END=51938625	GT	./.
chr1	51946863	.	C	.	.	LowGQX	END=51947015	GT	./.
chr1	51955891	.	C	.	.	LowGQX	END=51955943	GT	./.
chr1	51955944	.	T	.	.	LowGQX	END=51955947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51955948	.	A	.	.	LowGQX	.	GT	./.
chr1	51955949	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51955950	.	G	.	.	LowGQX	.	GT	./.
chr1	51955951	.	T	.	.	LowGQX	END=51955957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51955958	.	C	.	.	LowGQX	.	GT	./.
chr1	51955959	.	C	.	.	LowGQX	END=51955960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51955961	.	G	.	.	LowGQX	END=51955962	GT	./.
chr1	51955963	.	C	.	.	LowGQX	END=51955969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51955970	.	G	.	.	LowGQX	.	GT	./.
chr1	51955971	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51955972	.	T	.	.	LowGQX	END=51955973	GT	./.
chr1	51955974	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51955975	.	C	.	.	LowGQX	.	GT	./.
chr1	51955976	.	A	.	.	LowGQX	END=51955977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51955978	.	C	.	.	LowGQX	END=51955979	GT	./.
chr1	51955980	.	A	.	.	LowGQX	END=51955985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51955986	.	C	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	51955987	.	C	.	.	LowGQX	END=51955988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51955989	.	G	.	.	LowGQX	END=51955990	GT	./.
chr1	51955991	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51955992	.	C	.	.	LowGQX	.	GT	./.
chr1	51955993	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51955994	.	C	.	.	LowGQX	.	GT	./.
chr1	51955995	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51955996	.	G	.	.	LowGQX	END=51955999	GT	./.
chr1	51956000	.	G	.	.	LowGQX	END=51956001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51956002	.	C	.	.	LowGQX	.	GT	./.
chr1	51956003	.	C	.	.	LowGQX	END=51956007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51956008	.	C	.	.	LowGQX	END=51956009	GT	./.
chr1	51956010	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51956011	.	G	.	.	LowGQX	.	GT	./.
chr1	51956012	.	C	.	.	LowGQX	END=51956016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51956017	.	C	.	.	LowGQX	.	GT	./.
chr1	51956018	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51956019	.	C	.	.	LowGQX	.	GT	./.
chr1	51956020	.	G	.	.	LowGQX	END=51956021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51956022	.	G	.	.	LowGQX	END=51956023	GT	./.
chr1	51956024	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51956025	.	C	.	.	LowGQX	.	GT	./.
chr1	51956026	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51956027	.	G	.	.	LowGQX	.	GT	./.
chr1	51956028	.	G	.	.	LowGQX	END=51956029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51956030	.	G	.	.	LowGQX	.	GT	./.
chr1	51956031	.	T	.	.	LowGQX	END=51956032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51956033	.	C	.	.	LowGQX	.	GT	./.
chr1	51956034	.	A	.	.	LowGQX	END=51956035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51956036	.	G	.	.	LowGQX	.	GT	./.
chr1	51956037	.	A	.	.	LowGQX	END=51956038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51956039	.	C	.	.	LowGQX	.	GT	./.
chr1	51956040	.	A	.	.	LowGQX	END=51956041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51956042	.	C	.	.	LowGQX	.	GT	./.
chr1	51956043	.	C	.	.	LowGQX	END=51956046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51956047	.	C	.	.	LowGQX	END=51956048	GT	./.
chr1	51956049	.	A	.	.	LowGQX	END=51956050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	51984778	.	C	.	.	LowGQX	END=51984937	GT	./.
chr1	52082728	.	A	.	.	LowGQX	END=52082755	GT	./.
chr1	52082756	.	C	.	.	LowGQX	END=52082895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52117581	.	T	.	.	LowGQX	END=52117738	GT	./.
chr1	52135104	.	A	.	.	LowGQX	END=52135251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52135252	.	T	.	.	LowGQX	.	GT	./.
chr1	52135253	.	T	.	.	LowGQX	END=52135291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52135418	.	T	.	.	LowGQX	END=52135423	GT	./.
chr1	52135424	.	A	.	.	LowGQX	END=52135430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52135431	.	T	.	.	LowGQX	.	GT	./.
chr1	52135432	.	C	.	.	LowGQX	END=52135494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52135495	.	T	.	.	LowGQX	.	GT	./.
chr1	52135496	.	C	.	.	LowGQX	END=52135517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52179664	.	T	.	.	LowGQX	END=52179763	GT	./.
chr1	52195551	.	G	.	.	LowGQX	END=52195710	GT	./.
chr1	52205739	.	T	.	.	LowGQX	END=52205898	GT	./.
chr1	52211155	.	T	.	.	LowGQX	END=52211200	GT	./.
chr1	52211201	.	T	.	.	LowGQX	END=52211305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52212356	.	T	.	.	LowGQX	END=52212391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52212392	.	A	.	.	LowGQX	.	GT	./.
chr1	52212393	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52212394	.	A	.	.	LowGQX	.	GT	./.
chr1	52212395	.	A	.	.	LowGQX	END=52212396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52212397	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	52212398	.	T	.	.	LowGQX	END=52212410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52212411	.	A	.	.	LowGQX	.	GT	./.
chr1	52212412	.	G	.	.	LowGQX	END=52212417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52212418	.	G	.	.	LowGQX	.	GT	./.
chr1	52212419	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52212420	.	A	.	.	LowGQX	.	GT	./.
chr1	52212421	.	C	.	.	LowGQX	END=52212427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52212428	.	A	.	.	LowGQX	.	GT	./.
chr1	52212429	.	G	.	.	LowGQX	END=52212432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52212433	.	A	.	.	LowGQX	.	GT	./.
chr1	52212434	.	C	.	.	LowGQX	END=52212437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52212438	.	C	.	.	LowGQX	.	GT	./.
chr1	52212439	.	A	.	.	LowGQX	END=52212442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52212443	.	C	.	.	LowGQX	.	GT	./.
chr1	52212444	.	C	.	.	LowGQX	END=52212447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52212448	.	C	.	.	LowGQX	.	GT	./.
chr1	52212449	.	T	.	.	LowGQX	END=52212454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52212455	.	C	.	.	LowGQX	.	GT	./.
chr1	52213949	.	T	.	.	LowGQX	END=52214034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52214035	.	T	.	.	LowGQX	.	GT	./.
chr1	52214036	.	C	.	.	LowGQX	END=52214105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52215142	.	A	.	.	LowGQX	END=52215241	GT	./.
chr1	52215793	.	A	.	.	LowGQX	END=52215892	GT	./.
chr1	52218163	.	T	.	.	LowGQX	END=52218262	GT	./.
chr1	52221966	.	T	.	.	LowGQX	END=52222065	GT	./.
chr1	52226299	.	T	.	.	LowGQX	END=52226457	GT	./.
chr1	52227537	.	A	.	.	LowGQX	END=52227645	GT	./.
chr1	52231492	.	A	.	.	LowGQX	END=52231655	GT	./.
chr1	52237740	.	A	.	.	LowGQX	END=52237741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52237742	.	T	.	.	LowGQX	.	GT	./.
chr1	52237743	.	T	.	.	LowGQX	END=52237749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52237750	.	G	.	.	LowGQX	.	GT	./.
chr1	52237751	.	A	.	.	LowGQX	END=52237752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52237753	.	C	.	.	LowGQX	END=52237754	GT	./.
chr1	52237755	.	G	.	.	LowGQX	END=52237756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52237757	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	52237758	.	T	.	.	LowGQX	END=52237765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52237766	.	G	.	.	LowGQX	END=52237767	GT	./.
chr1	52237768	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52237769	.	A	.	.	LowGQX	.	GT	./.
chr1	52237770	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52237771	.	A	.	.	LowGQX	.	GT	./.
chr1	52237772	.	C	.	.	LowGQX	END=52237773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52237774	.	G	.	.	LowGQX	.	GT	./.
chr1	52237775	.	C	.	.	LowGQX	END=52237789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52237790	.	T	.	.	LowGQX	END=52237856	GT	./.
chr1	52238275	.	A	.	.	LowGQX	END=52238397	GT	./.
chr1	52242498	.	T	.	.	LowGQX	END=52242597	GT	./.
chr1	52246834	.	A	.	.	LowGQX	END=52247009	GT	./.
chr1	52248224	.	C	.	.	LowGQX	END=52248323	GT	./.
chr1	52249585	.	A	.	.	LowGQX	END=52249594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52249595	.	T	.	.	LowGQX	.	GT	./.
chr1	52249596	.	T	.	.	LowGQX	END=52249602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52249603	.	T	.	.	LowGQX	END=52249604	GT	./.
chr1	52249605	.	A	.	.	LowGQX	END=52249619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52249620	.	A	.	.	LowGQX	END=52249621	GT	./.
chr1	52249622	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52249623	.	T	.	.	LowGQX	.	GT	./.
chr1	52249624	.	A	.	.	LowGQX	END=52249627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52249628	.	T	.	.	LowGQX	.	GT	./.
chr1	52249629	.	T	.	.	LowGQX	END=52249642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52249643	.	T	.	.	LowGQX	.	GT	./.
chr1	52249644	.	G	.	.	LowGQX	END=52249657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52249658	.	T	.	.	LowGQX	.	GT	./.
chr1	52249659	.	T	.	.	LowGQX	END=52249669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52249670	.	T	.	.	LowGQX	.	GT	./.
chr1	52249671	.	C	.	.	LowGQX	END=52249677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52249678	.	G	.	.	LowGQX	.	GT	./.
chr1	52249679	.	G	.	.	LowGQX	END=52249694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52249695	.	A	.	.	LowGQX	END=52249699	GT	./.
chr1	52249918	.	T	.	.	LowGQX	END=52250017	GT	./.
chr1	52250112	.	A	.	.	LowGQX	END=52250155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52250156	.	C	.	.	LowGQX	.	GT	./.
chr1	52250157	.	A	.	.	LowGQX	END=52250170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52250171	.	C	.	.	LowGQX	END=52250213	GT	./.
chr1	52250214	.	T	.	.	LowGQX	END=52250221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52250222	.	G	.	.	LowGQX	.	GT	./.
chr1	52250223	.	G	.	.	LowGQX	END=52250230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52250231	.	G	.	.	LowGQX	.	GT	./.
chr1	52250232	.	C	.	.	LowGQX	END=52250238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52250239	.	T	.	.	LowGQX	.	GT	./.
chr1	52250240	.	T	.	.	LowGQX	END=52250256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52251407	.	G	.	.	LowGQX	END=52251627	GT	./.
chr1	52252194	.	C	.	.	LowGQX	END=52252293	GT	./.
chr1	52253023	.	A	.	.	LowGQX	END=52253142	GT	./.
chr1	52253143	.	A	.	.	LowGQX	END=52253162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52253375	.	T	.	.	LowGQX	END=52253474	GT	./.
chr1	52254906	.	A	.	.	LowGQX	END=52255107	GT	./.
chr1	52255235	.	C	.	.	LowGQX	END=52255334	GT	./.
chr1	52256203	.	A	.	.	LowGQX	END=52256323	GT	./.
chr1	52256568	.	T	.	.	LowGQX	END=52256628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52256629	.	A	.	.	LowGQX	.	GT	./.
chr1	52256630	.	A	.	.	LowGQX	END=52256650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52256651	.	A	.	.	LowGQX	.	GT	./.
chr1	52256652	.	C	.	.	LowGQX	END=52256653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52256654	.	A	.	.	LowGQX	.	GT	./.
chr1	52256655	.	C	.	.	LowGQX	END=52256665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52256666	.	A	.	.	LowGQX	.	GT	./.
chr1	52256667	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52257242	.	T	.	.	LowGQX	END=52257244	GT	./.
chr1	52257245	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52257246	.	T	.	.	LowGQX	.	GT	./.
chr1	52257247	.	C	.	.	LowGQX	END=52257248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52257249	.	C	.	.	LowGQX	END=52257341	GT	./.
chr1	52257695	.	A	.	.	LowGQX	END=52257794	GT	./.
chr1	52258023	.	C	.	.	LowGQX	END=52258122	GT	./.
chr1	52260140	.	T	.	.	LowGQX	END=52260284	GT	./.
chr1	52260461	.	C	.	.	LowGQX	END=52260560	GT	./.
chr1	52260813	.	C	.	.	LowGQX	END=52260821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52260822	.	T	.	.	LowGQX	END=52260883	GT	./.
chr1	52260884	.	G	.	.	LowGQX	END=52260902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52260903	.	C	.	.	LowGQX	END=52260905	GT	./.
chr1	52260906	.	T	.	.	LowGQX	END=52260912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52263919	.	A	.	.	LowGQX	END=52264085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52266226	.	A	.	.	LowGQX	END=52266357	GT	./.
chr1	52269484	.	A	.	.	LowGQX	END=52269638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52271158	.	C	.	.	LowGQX	END=52271309	GT	./.
chr1	52272464	.	A	.	.	LowGQX	END=52272587	GT	./.
chr1	52274981	.	A	.	.	LowGQX	END=52275080	GT	./.
chr1	52275951	.	A	.	.	LowGQX	END=52276078	GT	./.
chr1	52277664	.	A	.	.	LowGQX	END=52277772	GT	./.
chr1	52279685	.	A	.	.	LowGQX	.	GT	./.
chr1	52279686	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52279687	.	A	.	.	LowGQX	.	GT	./.
chr1	52279688	.	A	.	.	LowGQX	END=52279691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52279692	.	T	.	.	LowGQX	END=52279694	GT	./.
chr1	52279695	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52279696	.	A	.	.	LowGQX	END=52279697	GT	./.
chr1	52279698	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52279699	.	T	.	.	LowGQX	.	GT	./.
chr1	52279700	.	C	.	.	LowGQX	END=52279703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52279704	.	T	.	.	LowGQX	END=52279705	GT	./.
chr1	52279706	.	C	.	.	LowGQX	END=52279708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52279709	.	G	.	.	LowGQX	.	GT	./.
chr1	52279710	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52279711	.	T	.	.	LowGQX	.	GT	./.
chr1	52279712	.	C	.	.	LowGQX	END=52279718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52279719	.	A	.	.	LowGQX	.	GT	./.
chr1	52279720	.	T	.	.	LowGQX	END=52279722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52279723	.	A	.	.	LowGQX	.	GT	./.
chr1	52279724	.	A	.	.	LowGQX	END=52279725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52279726	.	T	.	.	LowGQX	.	GT	./.
chr1	52279727	.	C	.	.	LowGQX	END=52279728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52279729	.	T	.	.	LowGQX	END=52279784	GT	./.
chr1	52280203	.	T	.	.	LowGQX	END=52280302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52280363	.	A	.	.	LowGQX	END=52280487	GT	./.
chr1	52281973	.	T	.	.	LowGQX	END=52282072	GT	./.
chr1	52283666	.	A	.	.	LowGQX	END=52283822	GT	./.
chr1	52285459	.	T	.	.	LowGQX	END=52285544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52285545	.	A	.	.	LowGQX	END=52285558	GT	./.
chr1	52287149	.	G	.	.	LowGQX	END=52287248	GT	./.
chr1	52289334	.	A	.	.	LowGQX	END=52289460	GT	./.
chr1	52290906	.	T	.	.	LowGQX	END=52291116	GT	./.
chr1	52293455	.	G	.	.	LowGQX	END=52293554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52299687	.	A	.	.	LowGQX	END=52299844	GT	./.
chr1	52301794	.	A	.	.	LowGQX	END=52301876	GT	./.
chr1	52301877	.	G	.	.	LowGQX	END=52301879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52301880	.	G	.	.	LowGQX	.	GT	./.
chr1	52301881	.	C	.	.	LowGQX	END=52301882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52301883	.	G	.	.	LowGQX	.	GT	./.
chr1	52301884	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52301885	.	C	.	.	LowGQX	.	GT	./.
chr1	52301886	.	T	.	.	LowGQX	END=52301887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52301888	.	G	.	.	LowGQX	.	GT	./.
chr1	52301889	.	A	.	.	LowGQX	END=52301893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302026	.	C	.	.	LowGQX	END=52302028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302029	.	A	.	.	LowGQX	.	GT	./.
chr1	52302030	.	G	.	.	LowGQX	END=52302034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302035	.	A	.	.	LowGQX	.	GT	./.
chr1	52302036	.	C	.	.	LowGQX	END=52302037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302038	.	C	.	.	LowGQX	.	GT	./.
chr1	52302039	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302040	.	C	.	.	LowGQX	.	GT	./.
chr1	52302041	.	C	.	.	LowGQX	END=52302042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302043	.	G	.	.	LowGQX	END=52302044	GT	./.
chr1	52302045	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302046	.	C	.	.	LowGQX	.	GT	./.
chr1	52302047	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302048	.	G	.	.	LowGQX	.	GT	./.
chr1	52302049	.	T	.	.	LowGQX	END=52302051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302052	.	C	.	.	LowGQX	END=52302055	GT	./.
chr1	52302056	.	T	.	.	LowGQX	END=52302057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302058	.	C	.	.	LowGQX	.	GT	./.
chr1	52302059	.	A	.	.	LowGQX	END=52302060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302061	.	C	.	.	LowGQX	.	GT	./.
chr1	52302062	.	C	.	.	LowGQX	END=52302063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302064	.	G	.	.	LowGQX	.	GT	./.
chr1	52302065	.	C	.	.	LowGQX	END=52302070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302071	.	C	.	.	LowGQX	END=52302072	GT	./.
chr1	52302073	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302074	.	C	.	.	LowGQX	.	GT	./.
chr1	52302075	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302076	.	C	.	.	LowGQX	.	GT	./.
chr1	52302077	.	T	.	.	LowGQX	END=52302078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302079	.	G	.	.	LowGQX	.	GT	./.
chr1	52302080	.	C	.	.	LowGQX	END=52302084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302085	.	C	.	.	LowGQX	.	GT	./.
chr1	52302086	.	T	.	.	LowGQX	END=52302087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302088	.	C	.	.	LowGQX	.	GT	./.
chr1	52302089	.	C	.	.	LowGQX	END=52302090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302091	.	A	.	.	LowGQX	END=52302094	GT	./.
chr1	52302095	.	C	.	.	LowGQX	END=52302101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302102	.	G	.	.	LowGQX	.	GT	./.
chr1	52302103	.	G	.	.	LowGQX	END=52302104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302105	.	G	.	.	LowGQX	END=52302106	GT	./.
chr1	52302107	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302108	.	G	.	.	LowGQX	.	GT	./.
chr1	52302109	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302110	.	C	.	.	LowGQX	.	GT	./.
chr1	52302111	.	C	.	.	LowGQX	END=52302114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52302115	.	G	.	.	LowGQX	.	GT	./.
chr1	52302116	.	G	.	.	LowGQX	END=52302125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52303157	.	A	.	.	LowGQX	END=52303294	GT	./.
chr1	52305896	.	A	.	.	LowGQX	END=52306188	GT	./.
chr1	52343945	.	A	.	.	LowGQX	END=52344108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344109	.	C	.	.	LowGQX	END=52344112	GT	./.
chr1	52344113	.	T	.	.	LowGQX	END=52344139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344140	.	T	.	.	LowGQX	.	GT	./.
chr1	52344141	.	G	.	.	LowGQX	END=52344150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344151	.	G	.	.	LowGQX	.	GT	./.
chr1	52344152	.	G	.	.	LowGQX	END=52344164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344165	.	A	.	.	LowGQX	.	GT	./.
chr1	52344166	.	G	.	.	LowGQX	END=52344168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344169	.	G	.	.	LowGQX	.	GT	./.
chr1	52344170	.	C	.	.	LowGQX	END=52344171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344172	.	G	.	.	LowGQX	.	GT	./.
chr1	52344173	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344174	.	G	.	.	LowGQX	.	GT	./.
chr1	52344175	.	T	.	.	LowGQX	END=52344183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344184	.	C	.	.	LowGQX	.	GT	./.
chr1	52344185	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344186	.	A	.	.	LowGQX	.	GT	./.
chr1	52344187	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344188	.	C	.	.	LowGQX	.	GT	./.
chr1	52344189	.	C	.	.	LowGQX	END=52344191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344192	.	C	.	.	LowGQX	END=52344203	GT	./.
chr1	52344204	.	C	.	.	LowGQX	END=52344205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344206	.	A	.	.	LowGQX	END=52344207	GT	./.
chr1	52344208	.	A	.	.	LowGQX	END=52344213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344214	.	G	.	.	LowGQX	.	GT	./.
chr1	52344215	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344216	.	G	.	.	LowGQX	.	GT	./.
chr1	52344217	.	A	.	.	LowGQX	END=52344222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344223	.	C	.	.	LowGQX	.	GT	./.
chr1	52344224	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344225	.	C	.	.	LowGQX	END=52344226	GT	./.
chr1	52344227	.	C	.	.	LowGQX	END=52344229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344230	.	C	.	.	LowGQX	END=52344231	GT	./.
chr1	52344232	.	T	.	.	LowGQX	END=52344234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344235	.	C	.	.	LowGQX	END=52344236	GT	./.
chr1	52344237	.	C	.	.	LowGQX	END=52344239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344240	.	C	.	.	LowGQX	.	GT	./.
chr1	52344241	.	T	.	.	LowGQX	END=52344245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344246	.	C	.	.	LowGQX	END=52344248	GT	./.
chr1	52344249	.	G	.	.	LowGQX	END=52344250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344251	.	T	.	.	LowGQX	.	GT	./.
chr1	52344252	.	G	.	.	LowGQX	END=52344253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344254	.	C	.	.	LowGQX	.	GT	./.
chr1	52344255	.	A	.	.	LowGQX	END=52344259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344260	.	C	.	.	LowGQX	.	GT	./.
chr1	52344261	.	T	.	.	LowGQX	END=52344276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344277	.	C	.	.	LowGQX	.	GT	./.
chr1	52344278	.	T	.	.	LowGQX	END=52344281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344282	.	C	.	.	LowGQX	.	GT	./.
chr1	52344283	.	A	.	.	LowGQX	END=52344287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52344288	.	T	.	.	LowGQX	.	GT	./.
chr1	52344289	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52385597	.	G	.	.	LowGQX	END=52385651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52385652	.	T	.	.	LowGQX	.	GT	./.
chr1	52385653	.	C	.	.	LowGQX	END=52385788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52398988	.	A	.	.	LowGQX	END=52399067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52399068	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	52399069	.	A	.	.	LowGQX	END=52399073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52399074	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	52399075	.	T	.	.	LowGQX	END=52399098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52399099	.	C	.	.	LowGQX	END=52399116	GT	./.
chr1	52402914	.	T	.	.	LowGQX	END=52402955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	52402956	.	G	A	52.84	LowGQ;LowGQX	DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=17.61;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:6.02:84,6,0:60:6:1.000
chr1	52402957	.	G	.	.	LowGQX	END=52402986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52402987	.	G	.	.	LowGQX	END=52403055	GT	./.
chr1	52403056	.	G	.	.	LowGQX	END=52403086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52442560	.	A	.	.	LowGQX	END=52442791	GT	./.
chr1	52486595	.	C	.	.	LowGQX	END=52486694	GT	./.
chr1	52489155	.	A	.	.	LowGQX	END=52489254	GT	./.
chr1	52490167	.	G	.	.	LowGQX	END=52490266	GT	./.
chr1	52492934	.	C	.	.	LowGQX	END=52493033	GT	./.
chr1	52494227	.	T	.	.	LowGQX	END=52494256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52494257	.	A	.	.	LowGQX	.	GT	./.
chr1	52494258	.	G	.	.	LowGQX	END=52494259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52494260	.	T	.	.	LowGQX	.	GT	./.
chr1	52494261	.	C	.	.	LowGQX	END=52494265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52494266	.	C	.	.	LowGQX	.	GT	./.
chr1	52494267	.	C	.	.	LowGQX	END=52494314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52494315	.	A	.	.	LowGQX	END=52494316	GT	./.
chr1	52494317	.	A	.	.	LowGQX	END=52494346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52494347	.	T	.	.	LowGQX	.	GT	./.
chr1	52494348	.	T	.	.	LowGQX	END=52494349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52494350	.	A	.	.	LowGQX	END=52494351	GT	./.
chr1	52494352	.	A	.	.	LowGQX	END=52494355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52494356	.	A	.	.	LowGQX	END=52494377	GT	./.
chr1	52498367	.	G	.	.	LowGQX	END=52498481	GT	./.
chr1	52498482	.	G	.	.	LowGQX	END=52498596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52498597	.	A	.	.	LowGQX	.	GT	./.
chr1	52498598	.	C	.	.	LowGQX	END=52498631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52498632	.	C	.	.	LowGQX	END=52498734	GT	./.
chr1	52498735	.	C	.	.	LowGQX	END=52498748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52498749	.	A	.	.	LowGQX	.	GT	./.
chr1	52498750	.	A	.	.	LowGQX	END=52498765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52498766	.	T	.	.	LowGQX	.	GT	./.
chr1	52498767	.	T	.	.	LowGQX	END=52498885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52498886	.	T	.	.	LowGQX	END=52499103	GT	./.
chr1	52499104	.	G	.	.	LowGQX	END=52499170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52499171	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	52499172	.	G	.	.	LowGQX	END=52499292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52499293	.	C	.	.	LowGQX	END=52499435	GT	./.
chr1	52507190	.	C	.	.	LowGQX	END=52507289	GT	./.
chr1	52520670	.	A	.	.	LowGQX	END=52520770	GT	./.
chr1	52525497	.	C	.	.	LowGQX	END=52525596	GT	./.
chr1	52526100	.	G	.	.	LowGQX	END=52526207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52530495	.	A	.	.	LowGQX	END=52530558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52530559	.	T	.	.	LowGQX	.	GT	./.
chr1	52530560	.	C	.	.	LowGQX	END=52530564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52530565	.	T	.	.	LowGQX	END=52530612	GT	./.
chr1	52549010	.	A	.	.	LowGQX	END=52549215	GT	./.
chr1	52551767	.	A	.	.	LowGQX	END=52551866	GT	./.
chr1	52552358	.	T	.	.	LowGQX	END=52552457	GT	./.
chr1	52698864	.	G	.	.	LowGQX	END=52698963	GT	./.
chr1	52703158	.	A	.	.	LowGQX	END=52703167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	52703168	.	G	T	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.05;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.29:30,0,66:60:3:0.333
chr1	52703169	.	T	.	.	LowGQX	END=52703237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	52703238	.	A	.	.	LowGQX	END=52703297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52703298	.	A	.	.	LowGQX	.	GT	./.
chr1	52703299	.	A	.	.	LowGQX	END=52703322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52703323	.	T	.	.	LowGQX	.	GT	./.
chr1	52703324	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52703325	.	C	.	.	LowGQX	END=52705269	GT	./.
chr1	52729443	.	A	.	.	LowGQX	END=52729526	GT	./.
chr1	52729527	.	A	.	.	LowGQX	END=52729557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52732325	.	A	.	.	LowGQX	END=52732505	GT	./.
chr1	52734133	.	A	.	.	LowGQX	END=52734306	GT	./.
chr1	52740134	.	A	.	.	LowGQX	END=52740180	GT	./.
chr1	52740181	.	C	.	.	LowGQX	END=52740258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52744112	.	T	.	.	LowGQX	END=52744288	GT	./.
chr1	52747331	.	A	.	.	LowGQX	END=52747520	GT	./.
chr1	52759123	.	A	.	.	LowGQX	END=52759336	GT	./.
chr1	52759337	.	G	.	.	LowGQX	END=52759351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52761559	.	T	.	.	LowGQX	END=52761658	GT	./.
chr1	52769491	.	A	.	.	LowGQX	END=52769599	GT	./.
chr1	52798438	.	A	.	.	LowGQX	END=52798627	GT	./.
chr1	52800351	.	C	.	.	LowGQX	END=52800450	GT	./.
chr1	52803442	.	A	.	.	LowGQX	END=52803578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52803579	.	T	.	.	LowGQX	END=52803608	GT	./.
chr1	52805746	.	G	.	.	LowGQX	END=52805905	GT	./.
chr1	52810438	.	A	.	.	LowGQX	END=52810618	GT	./.
chr1	52811730	.	A	.	.	LowGQX	END=52811895	GT	./.
chr1	52818800	.	A	.	.	LowGQX	END=52818818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52818819	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	52818820	.	T	.	.	LowGQX	END=52818885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52818886	.	T	.	.	LowGQX	END=52818899	GT	./.
chr1	52819189	.	C	.	.	LowGQX	END=52819321	GT	./.
chr1	52820041	.	G	.	.	LowGQX	END=52820116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52820117	.	A	.	.	LowGQX	.	GT	./.
chr1	52820118	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52820119	.	C	.	.	LowGQX	END=52820140	GT	./.
chr1	52820276	.	C	.	.	LowGQX	END=52820375	GT	./.
chr1	52820510	.	A	.	.	LowGQX	END=52820613	GT	./.
chr1	52821046	.	A	.	.	LowGQX	END=52821145	GT	./.
chr1	52821260	.	T	.	.	LowGQX	END=52821359	GT	./.
chr1	52821430	.	G	.	.	LowGQX	END=52821529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52821856	.	A	.	.	LowGQX	END=52821976	GT	./.
chr1	52822036	.	G	.	.	LowGQX	END=52822092	GT	./.
chr1	52822093	.	G	.	.	LowGQX	END=52822095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52822096	.	T	.	.	LowGQX	.	GT	./.
chr1	52822097	.	G	.	.	LowGQX	END=52822100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52822101	.	A	.	.	LowGQX	.	GT	./.
chr1	52822102	.	A	.	.	LowGQX	END=52822104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52822105	.	G	.	.	LowGQX	.	GT	./.
chr1	52822106	.	C	.	.	LowGQX	END=52822107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52822108	.	G	.	.	LowGQX	END=52822111	GT	./.
chr1	52822112	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52822113	.	T	.	.	LowGQX	END=52822114	GT	./.
chr1	52822115	.	C	.	.	LowGQX	END=52822117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52822118	.	A	.	.	LowGQX	.	GT	./.
chr1	52822119	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52822120	.	A	.	.	LowGQX	.	GT	./.
chr1	52822121	.	A	.	.	LowGQX	END=52822124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52822125	.	A	.	.	LowGQX	.	GT	./.
chr1	52822126	.	G	.	.	LowGQX	END=52822132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52822133	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	52822134	.	G	.	.	LowGQX	END=52822135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	52822671	.	A	.	.	LowGQX	END=52822840	GT	./.
chr1	52823196	.	A	.	.	LowGQX	.	GT	./.
chr1	52823197	.	C	.	.	LowGQX	END=52823223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823224	.	A	.	.	LowGQX	.	GT	./.
chr1	52823225	.	T	.	.	LowGQX	END=52823227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823228	.	G	.	.	LowGQX	.	GT	./.
chr1	52823229	.	G	.	.	LowGQX	END=52823232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823233	.	G	.	.	LowGQX	END=52823234	GT	./.
chr1	52823235	.	A	.	.	LowGQX	END=52823244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823245	.	C	.	.	LowGQX	.	GT	./.
chr1	52823246	.	C	.	.	LowGQX	END=52823247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823248	.	C	.	.	LowGQX	.	GT	./.
chr1	52823249	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823250	.	A	.	.	LowGQX	.	GT	./.
chr1	52823251	.	G	.	.	LowGQX	END=52823253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823254	.	A	.	.	LowGQX	.	GT	./.
chr1	52823255	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823256	.	T	.	.	LowGQX	END=52823258	GT	./.
chr1	52823259	.	G	.	.	LowGQX	END=52823269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823270	.	A	.	.	LowGQX	.	GT	./.
chr1	52823271	.	T	.	.	LowGQX	END=52823276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823277	.	T	.	.	LowGQX	.	GT	./.
chr1	52823278	.	T	.	.	LowGQX	END=52823282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823283	.	T	.	.	LowGQX	.	GT	./.
chr1	52823284	.	G	.	.	LowGQX	END=52823288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823289	.	A	.	.	LowGQX	.	GT	./.
chr1	52823290	.	G	.	.	LowGQX	END=52823293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823294	.	C	.	.	LowGQX	.	GT	./.
chr1	52823295	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823296	.	G	.	.	LowGQX	END=52823297	GT	./.
chr1	52823298	.	C	.	.	LowGQX	END=52823299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823300	.	G	.	.	LowGQX	END=52823302	GT	./.
chr1	52823303	.	C	.	.	LowGQX	END=52823305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823306	.	G	.	.	LowGQX	.	GT	./.
chr1	52823307	.	G	.	.	LowGQX	END=52823315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823316	.	G	.	.	LowGQX	.	GT	./.
chr1	52823317	.	C	.	.	LowGQX	END=52823320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823321	.	C	.	.	LowGQX	.	GT	./.
chr1	52823322	.	C	.	.	LowGQX	END=52823325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823326	.	G	.	.	LowGQX	.	GT	./.
chr1	52823327	.	A	.	.	LowGQX	END=52823333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823334	.	A	.	.	LowGQX	.	GT	./.
chr1	52823335	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823336	.	T	.	.	LowGQX	.	GT	./.
chr1	52823337	.	T	.	.	LowGQX	END=52823339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823340	.	C	.	.	LowGQX	.	GT	./.
chr1	52823341	.	G	.	.	LowGQX	END=52823342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823343	.	G	.	.	LowGQX	.	GT	./.
chr1	52823344	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52823345	.	C	.	.	LowGQX	END=52823372	GT	./.
chr1	52823451	.	A	.	.	LowGQX	END=52823478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52823479	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	52823480	.	T	.	.	LowGQX	END=52823491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	52823492	.	G	.	.	LowGQX	END=52823517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	52823518	.	A	.	.	LowGQX	END=52823553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	52823554	.	T	.	.	LowGQX	END=52823555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:9:60
chr1	52823556	.	T	.	.	LowGQX	END=52823567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	52823568	.	A	.	.	LowGQX	END=52823569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:9:60
chr1	52823570	.	C	.	.	LowGQX	END=52823589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	52823590	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr1	52824001	.	A	.	.	LowGQX	END=52824135	GT	./.
chr1	52824286	.	C	.	.	LowGQX	END=52824317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52824318	.	A	.	.	LowGQX	.	GT	./.
chr1	52824319	.	C	.	.	LowGQX	END=52824320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52824321	.	A	.	.	LowGQX	.	GT	./.
chr1	52824322	.	C	.	.	LowGQX	END=52824330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52824331	.	A	.	.	LowGQX	.	GT	./.
chr1	52824332	.	G	.	.	LowGQX	END=52824335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52824336	.	C	.	.	LowGQX	.	GT	./.
chr1	52824337	.	C	.	.	LowGQX	END=52824344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52824345	.	A	.	.	LowGQX	.	GT	./.
chr1	52824346	.	T	.	.	LowGQX	END=52824353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52824354	.	T	.	.	LowGQX	.	GT	./.
chr1	52824355	.	T	.	.	LowGQX	END=52824361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52824362	.	A	.	.	LowGQX	.	GT	./.
chr1	52824363	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52824364	.	G	.	.	LowGQX	.	GT	./.
chr1	52824365	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52824366	.	A	.	.	LowGQX	.	GT	./.
chr1	52824367	.	C	.	.	LowGQX	END=52824370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52824371	.	C	.	.	LowGQX	END=52824444	GT	./.
chr1	52824697	.	A	.	.	LowGQX	END=52824818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52824819	.	T	.	.	LowGQX	END=52824831	GT	./.
chr1	52824866	.	G	.	.	LowGQX	END=52825031	GT	./.
chr1	52825059	.	G	.	.	LowGQX	END=52825218	GT	./.
chr1	52825375	.	A	.	.	LowGQX	END=52825557	GT	./.
chr1	52825744	.	A	.	.	LowGQX	END=52825927	GT	./.
chr1	52826094	.	A	.	.	LowGQX	END=52826197	GT	./.
chr1	52826198	.	G	.	.	LowGQX	END=52826223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52826644	.	A	.	.	LowGQX	END=52826806	GT	./.
chr1	52827183	.	A	.	.	LowGQX	END=52827290	GT	./.
chr1	52828272	.	A	.	.	LowGQX	END=52828420	GT	./.
chr1	52830209	.	G	.	.	LowGQX	END=52830265	GT	./.
chr1	52830266	.	C	.	.	LowGQX	END=52830308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52838802	.	T	.	.	PASS	END=52838840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	52838841	.	T	.	.	PASS	END=52838876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	52838877	.	C	.	.	PASS	END=52838936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	52838937	.	C	.	.	PASS	END=52838985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	52838986	.	T	.	.	PASS	END=52839003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	52839004	.	G	.	.	PASS	END=52839019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	52839020	.	T	.	.	PASS	END=52839024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	52839025	.	A	.	.	PASS	END=52839034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	52839035	.	G	.	.	PASS	END=52839050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	52839051	.	G	.	.	PASS	END=52839052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	52839053	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:15:60
chr1	52839054	.	A	.	.	PASS	END=52839072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	52839073	.	T	.	.	PASS	END=52839079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	52839080	.	G	.	.	PASS	END=52839098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	52840431	.	T	.	.	PASS	END=52840512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	52840513	.	C	.	.	PASS	END=52840534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:84:60
chr1	52840535	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:72:60
chr1	52840536	.	T	.	.	PASS	END=52840554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	52840555	.	A	.	.	PASS	END=52840559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	52840560	.	A	.	.	PASS	END=52840580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	52840581	.	C	.	.	PASS	END=52840582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr1	52840583	.	A	.	.	PASS	END=52840590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	52840591	.	T	.	.	PASS	END=52840617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	52840618	.	A	.	.	PASS	END=52840620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	52841051	.	A	.	.	PASS	END=52841078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	52841079	.	G	.	.	PASS	END=52841109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	52841110	.	C	.	.	PASS	END=52841180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	52841181	.	A	.	.	PASS	END=52841227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	52841228	.	C	.	.	PASS	END=52841252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	52841253	.	C	.	.	PASS	END=52841260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	52841261	.	A	.	.	PASS	END=52841270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	52841271	.	C	.	.	PASS	END=52841278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	52841279	.	A	.	.	PASS	END=52841299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	52841300	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr1	52841301	.	C	.	.	PASS	END=52841317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	52841318	.	A	.	.	PASS	END=52841322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	52847263	.	G	.	.	PASS	END=52847342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	52847343	.	C	.	.	PASS	END=52847402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	52847403	.	T	.	.	PASS	END=52847410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	52847411	.	T	.	.	PASS	END=52847436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	52847437	.	G	.	.	PASS	END=52847459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:75:60
chr1	52847460	.	A	.	.	PASS	END=52847473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:60
chr1	52847474	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:54:60
chr1	52847475	.	C	.	.	PASS	END=52847477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:72:60
chr1	52847478	.	G	.	.	PASS	END=52847484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	52849041	.	G	.	.	PASS	END=52849056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	52849057	.	T	.	.	PASS	END=52849112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:88:60
chr1	52849113	.	C	.	.	PASS	END=52849177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:93:60
chr1	52849178	.	T	.	.	PASS	END=52849229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	52849230	.	C	.	.	PASS	END=52849274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	52849275	.	T	.	.	PASS	END=52849292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	52849451	.	C	.	.	PASS	END=52849485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	52849486	.	C	.	.	PASS	END=52849497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	52849498	.	T	.	.	PASS	END=52849520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	52849521	.	G	.	.	PASS	END=52849575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	52849576	.	C	.	.	PASS	END=52849630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	52849631	.	T	.	.	PASS	END=52849648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	52849649	.	T	.	.	PASS	END=52849660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	52850171	.	T	.	.	PASS	END=52850228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	52850229	.	A	.	.	PASS	END=52850314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	52850315	.	T	.	.	PASS	END=52850367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	52850368	.	C	.	.	PASS	END=52850387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:85:60
chr1	52850388	.	A	.	.	PASS	END=52850393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	52850394	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:55:60
chr1	52850395	.	T	.	.	PASS	END=52850423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	52850424	.	G	.	.	PASS	END=52850436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	52850437	.	C	.	.	PASS	END=52850444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	52850782	.	C	.	.	PASS	END=52850802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	52850803	.	A	.	.	PASS	END=52850836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	52850837	.	C	.	.	PASS	END=52850920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	52850921	.	C	.	.	PASS	END=52850953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	52850954	.	G	.	.	PASS	END=52850983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:97:60
chr1	52850984	.	C	.	.	PASS	END=52850985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	52851473	.	A	.	.	PASS	END=52851508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	52851509	.	C	.	.	PASS	END=52851537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	52851538	.	C	.	.	PASS	END=52851634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	52851635	.	A	.	.	PASS	END=52851672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:88:60
chr1	52854063	.	T	.	.	PASS	END=52854075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	52854076	.	G	.	.	PASS	END=52854080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	52854081	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:1:60
chr1	52854082	.	T	.	.	PASS	END=52854083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	52854084	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	52854085	.	A	.	.	PASS	END=52854096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	52854097	.	A	.	.	PASS	END=52854106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	52854107	.	A	.	.	PASS	END=52854119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	52854120	.	C	.	.	PASS	END=52854126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	52854127	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:48:60
chr1	52854128	.	C	.	.	PASS	END=52854129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	52854130	.	T	.	.	PASS	END=52854135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	52854136	.	A	.	.	PASS	END=52854140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	52854141	.	A	.	.	PASS	END=52854152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	52854153	.	C	.	.	PASS	END=52854165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	52854166	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:60
chr1	52854167	.	G	.	.	PASS	END=52854183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	52854184	.	G	.	.	PASS	END=52854197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	52854198	.	C	.	.	PASS	END=52854223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	52854224	.	C	.	.	PASS	END=52854249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	52854250	.	A	.	.	PASS	END=52854340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	52854341	.	A	.	.	PASS	END=52854360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	52854838	.	G	.	.	PASS	END=52854864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	52854865	.	C	.	.	PASS	END=52854893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	52854894	.	C	.	.	PASS	END=52854930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	52854931	.	T	.	.	PASS	END=52854989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	52854990	.	A	.	.	PASS	END=52855022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	52855023	.	A	.	.	PASS	END=52855043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	52855044	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:99:60
chr1	52859064	.	C	.	.	PASS	END=52859073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	52859074	.	G	.	.	PASS	END=52859100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	52859101	.	A	.	.	PASS	END=52859105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr1	52859106	.	C	.	.	PASS	END=52859118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	52859119	.	T	.	.	PASS	END=52859141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	52859142	.	A	.	.	PASS	END=52859143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	52859144	.	C	.	.	PASS	END=52859179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	52859180	.	G	.	.	PASS	END=52859201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	52859202	.	T	.	.	PASS	END=52859294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	52859295	.	A	.	.	PASS	END=52859335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:90:60
chr1	52859336	.	A	.	.	PASS	END=52859377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:59
chr1	52859378	.	T	.	.	PASS	END=52859394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:59
chr1	52859395	.	A	.	.	PASS	END=52859417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	52859418	.	C	.	.	PASS	END=52859436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	52859437	.	C	.	.	PASS	END=52859450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	52859451	.	T	.	.	PASS	END=52859465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	52859466	.	T	.	.	PASS	END=52859471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	52859472	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	52859473	.	A	.	.	PASS	END=52859474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	52859475	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	52859476	.	C	.	.	PASS	END=52859479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	52859480	.	G	.	.	LowGQX	END=52859481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	52859482	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	52859483	.	A	.	.	LowGQX	END=52859484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	52859485	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	52859486	.	T	.	.	LowGQX	END=52859488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	52859489	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	52859490	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:60
chr1	52859491	.	A	.	.	LowGQX	END=52859507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	52859508	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	52859509	.	A	.	.	LowGQX	END=52859523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	52859524	.	A	.	.	LowGQX	END=52859526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	52861667	.	C	.	.	PASS	END=52861680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	52861681	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:3:60
chr1	52861682	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	52861683	.	C	.	.	PASS	END=52861689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	52861690	.	G	.	.	PASS	END=52861704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	52861705	.	T	.	.	PASS	END=52861724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	52861725	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:0:60
chr1	52861726	.	T	.	.	PASS	END=52861746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	52861747	.	G	.	.	PASS	END=52861761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	52861762	.	G	.	.	PASS	END=52861767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	52861768	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:52:60
chr1	52861769	.	T	.	.	PASS	END=52861819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:60
chr1	52861820	.	G	.	.	PASS	END=52861851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	52861852	.	C	.	.	PASS	END=52861965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	52861966	.	A	.	.	PASS	END=52862002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr1	52862003	.	T	.	.	PASS	END=52862030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	52862031	.	T	.	.	PASS	END=52862032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	52862033	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:45:60
chr1	52862034	.	C	.	.	PASS	END=52862058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	52862059	.	A	.	.	PASS	END=52862070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	52862071	.	T	.	.	PASS	END=52862073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	52862074	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	52862075	.	C	.	.	PASS	END=52862084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	52862085	.	G	.	.	PASS	END=52862087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	52863306	.	G	.	.	PASS	END=52863330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	52863331	.	G	.	.	PASS	END=52863352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	52863353	.	C	.	.	PASS	END=52863382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	52863383	.	C	.	.	PASS	END=52863431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	52863432	.	T	.	.	PASS	END=52863506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	52863507	.	A	.	.	PASS	END=52863538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	52863539	.	G	.	.	PASS	END=52863571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	52863572	.	A	.	.	PASS	END=52863586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	52866983	.	T	.	.	PASS	END=52867020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	52867021	.	G	.	.	PASS	END=52867052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	52867053	.	C	.	.	PASS	END=52867158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:90:60
chr1	52867159	.	T	.	.	PASS	END=52867191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	52867192	.	A	.	.	PASS	END=52867211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	52867212	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:99:60
chr1	52867750	.	T	.	.	PASS	END=52867771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	52867772	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:66:60
chr1	52867773	.	A	.	.	PASS	END=52867793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:60
chr1	52867794	.	C	.	.	PASS	END=52867795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:72:60
chr1	52867796	.	C	.	.	PASS	END=52867804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	52867805	.	A	.	.	PASS	END=52867835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	52867836	.	G	.	.	PASS	END=52867909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	52867910	.	A	.	.	PASS	END=52867946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	52870420	.	A	.	.	LowGQX	END=52870553	GT	./.
chr1	52871350	.	A	.	.	LowGQX	END=52871513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52874017	.	A	.	.	LowGQX	END=52874132	GT	./.
chr1	52874239	.	A	.	.	LowGQX	END=52874364	GT	./.
chr1	52876780	.	C	.	.	LowGQX	END=52876879	GT	./.
chr1	52878184	.	A	.	.	LowGQX	END=52878298	GT	./.
chr1	52879549	.	A	.	.	LowGQX	END=52879665	GT	./.
chr1	52880257	.	C	.	.	LowGQX	END=52880356	GT	./.
chr1	52880432	.	A	.	.	LowGQX	END=52880533	GT	./.
chr1	52880985	.	T	.	.	LowGQX	END=52881084	GT	./.
chr1	52882318	.	A	.	.	LowGQX	END=52882432	GT	./.
chr1	52889493	.	A	.	.	LowGQX	END=52889690	GT	./.
chr1	52891019	.	A	.	.	LowGQX	END=52891181	GT	./.
chr1	52896683	.	A	.	.	LowGQX	END=52896875	GT	./.
chr1	52896876	.	G	.	.	LowGQX	END=52897068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52897069	.	C	.	.	LowGQX	END=52897134	GT	./.
chr1	52901035	.	A	.	.	LowGQX	END=52901123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52901124	.	G	.	.	LowGQX	.	GT	./.
chr1	52901125	.	A	.	.	LowGQX	END=52901139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52902425	.	A	.	.	LowGQX	END=52902652	GT	./.
chr1	52903890	.	A	.	.	LowGQX	END=52904009	GT	./.
chr1	52911451	.	A	.	.	LowGQX	END=52911467	GT	./.
chr1	52911468	.	G	.	.	LowGQX	END=52911470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911471	.	A	.	.	LowGQX	.	GT	./.
chr1	52911472	.	A	.	.	LowGQX	END=52911476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911477	.	T	.	.	LowGQX	.	GT	./.
chr1	52911478	.	G	.	.	LowGQX	END=52911490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911491	.	T	.	.	LowGQX	END=52911492	GT	./.
chr1	52911493	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911494	.	C	.	.	LowGQX	.	GT	./.
chr1	52911495	.	A	.	.	LowGQX	END=52911496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911497	.	A	.	.	LowGQX	.	GT	./.
chr1	52911498	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911499	.	A	.	.	LowGQX	END=52911501	GT	./.
chr1	52911502	.	T	.	.	LowGQX	END=52911505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911506	.	T	.	.	LowGQX	.	GT	./.
chr1	52911507	.	T	.	.	LowGQX	END=52911511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911512	.	T	.	.	LowGQX	END=52911513	GT	./.
chr1	52911514	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911515	.	T	.	.	LowGQX	.	GT	./.
chr1	52911516	.	A	.	.	LowGQX	END=52911517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911518	.	A	.	.	LowGQX	.	GT	./.
chr1	52911519	.	T	.	.	LowGQX	END=52911520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911521	.	C	.	.	LowGQX	.	GT	./.
chr1	52911522	.	T	.	.	LowGQX	END=52911527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911528	.	G	.	.	LowGQX	.	GT	./.
chr1	52911529	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911530	.	T	.	.	LowGQX	END=52911532	GT	./.
chr1	52911533	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911534	.	A	.	.	LowGQX	.	GT	./.
chr1	52911535	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911536	.	T	.	.	LowGQX	.	GT	./.
chr1	52911537	.	G	.	.	LowGQX	END=52911538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911539	.	T	.	.	LowGQX	.	GT	./.
chr1	52911540	.	C	.	.	LowGQX	END=52911542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911543	.	T	.	.	LowGQX	.	GT	./.
chr1	52911544	.	A	.	.	LowGQX	END=52911550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911603	.	A	.	.	LowGQX	END=52911604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911605	.	A	.	.	LowGQX	.	GT	./.
chr1	52911606	.	G	.	.	LowGQX	END=52911607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911608	.	A	.	.	LowGQX	END=52911613	GT	./.
chr1	52911614	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911615	.	T	.	.	LowGQX	.	GT	./.
chr1	52911616	.	A	.	.	LowGQX	END=52911618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52911619	.	T	.	.	LowGQX	END=52911702	GT	./.
chr1	52911935	.	A	.	.	LowGQX	END=52912074	GT	./.
chr1	52912075	.	A	.	.	LowGQX	END=52912106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52912107	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	52912108	.	G	.	.	LowGQX	END=52912116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52912251	.	T	.	.	LowGQX	END=52912350	GT	./.
chr1	52924006	.	A	.	.	LowGQX	END=52924036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52924037	.	T	.	.	LowGQX	END=52924123	GT	./.
chr1	52926801	.	A	.	.	LowGQX	END=52926900	GT	./.
chr1	52927183	.	A	.	.	LowGQX	END=52927290	GT	./.
chr1	52927363	.	G	.	.	LowGQX	END=52927462	GT	./.
chr1	52929352	.	T	.	.	LowGQX	END=52929451	GT	./.
chr1	52930740	.	A	.	.	LowGQX	END=52930847	GT	./.
chr1	52933791	.	A	.	.	LowGQX	END=52933946	GT	./.
chr1	52937622	.	A	.	.	LowGQX	END=52937811	GT	./.
chr1	52940502	.	A	.	.	LowGQX	END=52940534	GT	./.
chr1	52940535	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940536	.	C	.	.	LowGQX	.	GT	./.
chr1	52940537	.	A	.	.	LowGQX	END=52940550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940551	.	G	.	.	LowGQX	.	GT	./.
chr1	52940552	.	G	.	.	LowGQX	END=52940564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940565	.	T	.	.	LowGQX	.	GT	./.
chr1	52940566	.	C	.	.	LowGQX	END=52940570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940571	.	T	.	.	LowGQX	.	GT	./.
chr1	52940572	.	C	.	.	LowGQX	END=52940574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940575	.	T	.	.	LowGQX	.	GT	./.
chr1	52940576	.	A	.	.	LowGQX	END=52940581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940582	.	A	.	.	LowGQX	.	GT	./.
chr1	52940583	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940584	.	A	.	.	LowGQX	END=52940585	GT	./.
chr1	52940586	.	G	.	.	LowGQX	END=52940597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940598	.	G	.	.	LowGQX	.	GT	./.
chr1	52940599	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940600	.	T	.	.	LowGQX	.	GT	./.
chr1	52940601	.	T	.	.	LowGQX	END=52940614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940615	.	G	.	.	LowGQX	.	GT	./.
chr1	52940616	.	G	.	.	LowGQX	END=52940620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940621	.	A	.	.	LowGQX	.	GT	./.
chr1	52940622	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940623	.	A	.	.	LowGQX	.	GT	./.
chr1	52940624	.	T	.	.	LowGQX	END=52940632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940633	.	G	.	.	LowGQX	.	GT	./.
chr1	52940634	.	C	.	.	LowGQX	END=52940636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940637	.	A	.	.	LowGQX	.	GT	./.
chr1	52940638	.	C	.	.	LowGQX	END=52940642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940643	.	T	.	.	LowGQX	.	GT	./.
chr1	52940644	.	G	.	.	LowGQX	END=52940645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940646	.	T	.	.	LowGQX	.	GT	./.
chr1	52940647	.	G	.	.	LowGQX	END=52940650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940651	.	A	.	.	LowGQX	.	GT	./.
chr1	52940652	.	C	.	.	LowGQX	END=52940654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940655	.	T	.	.	LowGQX	END=52940657	GT	./.
chr1	52940658	.	G	.	.	LowGQX	END=52940659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940660	.	T	.	.	LowGQX	END=52940661	GT	./.
chr1	52940662	.	C	.	.	LowGQX	END=52940663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940664	.	A	.	.	LowGQX	.	GT	./.
chr1	52940665	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940666	.	A	.	.	LowGQX	.	GT	./.
chr1	52940667	.	T	.	.	LowGQX	END=52940679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940680	.	C	.	.	LowGQX	.	GT	./.
chr1	52940681	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940682	.	G	.	.	LowGQX	.	GT	./.
chr1	52940683	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940684	.	T	.	.	LowGQX	END=52940701	GT	./.
chr1	52940702	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940703	.	T	.	.	LowGQX	END=52940704	GT	./.
chr1	52940705	.	A	.	.	LowGQX	END=52940707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940708	.	C	.	.	LowGQX	END=52940710	GT	./.
chr1	52940711	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940712	.	T	.	.	LowGQX	.	GT	./.
chr1	52940713	.	T	.	.	LowGQX	END=52940726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940727	.	C	.	.	LowGQX	.	GT	./.
chr1	52940728	.	A	.	.	LowGQX	END=52940731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940732	.	A	.	.	LowGQX	.	GT	./.
chr1	52940733	.	C	.	.	LowGQX	END=52940735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940736	.	T	.	.	LowGQX	.	GT	./.
chr1	52940737	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940738	.	G	.	.	LowGQX	.	GT	./.
chr1	52940739	.	C	.	.	LowGQX	END=52940741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940742	.	A	.	.	LowGQX	.	GT	./.
chr1	52940743	.	G	.	.	LowGQX	END=52940754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940755	.	A	.	.	LowGQX	.	GT	./.
chr1	52940756	.	A	.	.	LowGQX	END=52940759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940760	.	G	.	.	LowGQX	.	GT	./.
chr1	52940761	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940762	.	T	.	.	LowGQX	.	GT	./.
chr1	52940763	.	T	.	.	LowGQX	END=52940765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940766	.	G	.	.	LowGQX	.	GT	./.
chr1	52940767	.	A	.	.	LowGQX	END=52940777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940778	.	T	.	.	LowGQX	.	GT	./.
chr1	52940779	.	C	.	.	LowGQX	END=52940782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940783	.	T	.	.	LowGQX	.	GT	./.
chr1	52940784	.	T	.	.	LowGQX	END=52940785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940786	.	T	.	.	LowGQX	.	GT	./.
chr1	52940787	.	T	.	.	LowGQX	END=52940798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940799	.	T	.	.	LowGQX	.	GT	./.
chr1	52940800	.	T	.	.	LowGQX	END=52940830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940831	.	A	.	.	LowGQX	.	GT	./.
chr1	52940832	.	A	.	.	LowGQX	END=52940851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52940852	.	G	.	.	LowGQX	END=52941209	GT	./.
chr1	52943378	.	A	.	.	LowGQX	END=52943556	GT	./.
chr1	52947093	.	A	.	.	LowGQX	END=52947309	GT	./.
chr1	52947474	.	A	.	.	LowGQX	END=52947597	GT	./.
chr1	52954579	.	A	.	.	LowGQX	END=52954709	GT	./.
chr1	52956389	.	T	.	.	LowGQX	END=52956488	GT	./.
chr1	52959199	.	T	.	.	LowGQX	END=52959203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52959204	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	52959205	.	G	.	.	LowGQX	END=52959216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52959217	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	52959218	.	A	.	.	LowGQX	END=52959224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52959225	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	52959226	.	T	.	.	LowGQX	END=52959228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52959229	.	C	.	.	LowGQX	.	GT	./.
chr1	52959230	.	T	.	.	LowGQX	END=52959233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52959234	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	52959235	.	A	.	.	LowGQX	END=52959237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52959238	.	G	.	.	LowGQX	.	GT	./.
chr1	52959239	.	A	.	.	LowGQX	END=52959268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52959269	.	G	.	.	LowGQX	.	GT	./.
chr1	52959270	.	A	.	.	LowGQX	END=52959273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52959274	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	52959275	.	A	.	.	LowGQX	END=52959289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52959290	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	52959291	.	T	.	.	LowGQX	END=52959298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52959299	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	52959300	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	52959301	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	52959302	.	A	.	.	LowGQX	END=52959306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52959307	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	52959308	.	T	.	.	LowGQX	END=52959313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52959314	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	52959315	.	A	.	.	LowGQX	END=52959321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52959322	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	52959323	.	T	.	.	LowGQX	END=52959330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	52959331	.	T	.	.	LowGQX	END=52959410	GT	./.
chr1	52961094	.	C	.	.	LowGQX	END=52961126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52961127	.	A	.	.	LowGQX	END=52961129	GT	./.
chr1	52961130	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52961131	.	C	.	.	LowGQX	.	GT	./.
chr1	52961132	.	A	.	.	LowGQX	END=52961143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52961144	.	A	.	.	LowGQX	END=52961145	GT	./.
chr1	52961146	.	C	.	.	LowGQX	END=52961147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52961148	.	A	.	.	LowGQX	.	GT	./.
chr1	52961149	.	A	.	.	LowGQX	END=52961151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52961152	.	T	.	.	LowGQX	.	GT	./.
chr1	52961153	.	A	.	.	LowGQX	END=52961155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52961156	.	C	.	.	LowGQX	.	GT	./.
chr1	52961157	.	A	.	.	LowGQX	END=52961161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52961162	.	T	.	.	LowGQX	.	GT	./.
chr1	52961163	.	G	.	.	LowGQX	END=52961164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52961165	.	G	.	.	LowGQX	.	GT	./.
chr1	52961166	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52961167	.	C	.	.	LowGQX	.	GT	./.
chr1	52961168	.	A	.	.	LowGQX	END=52961172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52961173	.	A	.	.	LowGQX	.	GT	./.
chr1	52961174	.	C	.	.	LowGQX	END=52961175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52961176	.	T	.	.	LowGQX	.	GT	./.
chr1	52961177	.	A	.	.	LowGQX	END=52961183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52961184	.	C	.	.	LowGQX	.	GT	./.
chr1	52961185	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52961186	.	T	.	.	LowGQX	.	GT	./.
chr1	52961187	.	T	.	.	LowGQX	END=52961188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52961189	.	T	.	.	LowGQX	.	GT	./.
chr1	52961190	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52961191	.	G	.	.	LowGQX	.	GT	./.
chr1	52961192	.	A	.	.	LowGQX	END=52961193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52962656	.	C	.	.	LowGQX	END=52962857	GT	./.
chr1	52975266	.	A	.	.	LowGQX	END=52975445	GT	./.
chr1	52981514	.	G	.	.	LowGQX	END=52981728	GT	./.
chr1	52991233	.	A	.	.	LowGQX	END=52991294	GT	./.
chr1	52991295	.	C	.	.	LowGQX	END=52991467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52991468	.	T	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	52991469	.	T	.	.	LowGQX	END=52991472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	52991473	.	T	.	.	LowGQX	END=52991954	GT	./.
chr1	53068049	.	G	.	.	LowGQX	END=53068259	GT	./.
chr1	53072354	.	A	.	.	LowGQX	END=53072619	GT	./.
chr1	53073932	.	A	.	.	LowGQX	END=53074099	GT	./.
chr1	53099144	.	G	.	.	LowGQX	END=53099363	GT	./.
chr1	53108533	.	A	.	.	LowGQX	END=53108676	GT	./.
chr1	53122460	.	A	.	.	LowGQX	END=53122535	GT	./.
chr1	53122536	.	C	.	.	LowGQX	END=53122546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53122547	.	T	.	.	LowGQX	.	GT	./.
chr1	53122548	.	T	.	.	LowGQX	END=53122556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53122557	.	T	.	.	LowGQX	.	GT	./.
chr1	53122558	.	T	.	.	LowGQX	END=53122559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53122560	.	A	.	.	LowGQX	END=53122561	GT	./.
chr1	53122562	.	C	.	.	LowGQX	END=53122587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53122588	.	A	.	.	LowGQX	END=53122589	GT	./.
chr1	53122590	.	G	.	.	LowGQX	END=53122595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53122596	.	A	.	.	LowGQX	.	GT	./.
chr1	53122597	.	A	.	.	LowGQX	END=53122648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53122649	.	C	.	.	LowGQX	.	GT	./.
chr1	53122650	.	A	.	.	LowGQX	END=53122669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53122670	.	A	.	.	LowGQX	.	GT	./.
chr1	53122671	.	G	.	.	LowGQX	END=53122686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53122687	.	C	.	.	LowGQX	.	GT	./.
chr1	53122688	.	T	.	.	LowGQX	END=53122714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53153390	.	C	.	.	LowGQX	END=53153842	GT	./.
chr1	53158397	.	A	.	.	LowGQX	END=53158541	GT	./.
chr1	53163891	.	A	.	.	LowGQX	END=53164000	GT	./.
chr1	53192231	.	C	.	.	LowGQX	END=53192390	GT	./.
chr1	53222128	.	A	.	.	LowGQX	END=53222297	GT	./.
chr1	53236690	.	A	.	.	LowGQX	END=53237448	GT	./.
chr1	53245523	.	A	.	.	LowGQX	END=53245587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53245588	.	T	.	.	LowGQX	END=53245667	GT	./.
chr1	53250517	.	G	.	.	LowGQX	END=53250727	GT	./.
chr1	53255658	.	T	.	.	LowGQX	END=53255757	GT	./.
chr1	53261962	.	A	.	.	LowGQX	END=53262065	GT	./.
chr1	53262382	.	A	.	.	LowGQX	END=53262481	GT	./.
chr1	53267489	.	A	.	.	LowGQX	END=53267654	GT	./.
chr1	53267738	.	T	.	.	LowGQX	END=53267837	GT	./.
chr1	53271096	.	A	.	.	LowGQX	END=53271124	GT	./.
chr1	53271125	.	A	.	.	LowGQX	END=53271195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53279206	.	A	.	.	LowGQX	END=53279407	GT	./.
chr1	53279509	.	C	.	.	LowGQX	END=53279608	GT	./.
chr1	53282202	.	A	.	.	LowGQX	END=53282361	GT	./.
chr1	53287109	.	A	.	.	LowGQX	END=53287183	GT	./.
chr1	53287184	.	T	.	.	LowGQX	END=53287216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53287217	.	C	.	.	LowGQX	.	GT	./.
chr1	53287218	.	A	.	.	LowGQX	END=53287240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53287241	.	C	.	.	LowGQX	END=53287242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	53287243	.	T	C	6.77	LowGQX;LowQD	BaseQRankSum=1.026;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=1.026;QD=1.69;ReadPosRankSum=1.026;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:35.74:36,0,66:60:7:0.500
chr1	53287244	.	T	.	.	LowGQX	END=53287284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	53287285	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	53287286	.	A	.	.	LowGQX	END=53287303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	53308495	.	C	.	.	LowGQX	END=53308621	GT	./.
chr1	53308622	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	53308623	.	C	.	.	LowGQX	.	GT	./.
chr1	53308624	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	53308625	.	C	.	.	LowGQX	END=53308650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53320136	.	G	.	.	LowGQX	END=53320302	GT	./.
chr1	53322669	.	G	.	.	LowGQX	END=53323327	GT	./.
chr1	53323328	.	G	.	.	LowGQX	END=53323421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53326402	.	G	.	.	LowGQX	END=53326525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53326526	.	A	.	.	LowGQX	END=53326543	GT	./.
chr1	53329652	.	G	.	.	LowGQX	END=53329829	GT	./.
chr1	53332157	.	T	.	.	LowGQX	END=53332256	GT	./.
chr1	53333210	.	G	.	.	LowGQX	END=53333310	GT	./.
chr1	53333374	.	C	.	.	LowGQX	END=53333473	GT	./.
chr1	53343353	.	G	.	.	LowGQX	END=53343515	GT	./.
chr1	53343569	.	A	.	.	LowGQX	END=53343668	GT	./.
chr1	53347142	.	G	.	.	LowGQX	END=53347337	GT	./.
chr1	53351486	.	T	.	.	LowGQX	END=53351488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53351489	.	C	.	.	LowGQX	.	GT	./.
chr1	53351490	.	T	.	.	LowGQX	END=53351585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53352627	.	G	.	.	LowGQX	END=53352726	GT	./.
chr1	53358453	.	G	.	.	LowGQX	END=53358629	GT	./.
chr1	53362181	.	T	.	.	LowGQX	END=53362220	GT	./.
chr1	53362221	.	T	.	.	LowGQX	END=53362226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53362227	.	T	.	.	LowGQX	END=53362228	GT	./.
chr1	53362229	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53362230	.	A	.	.	LowGQX	.	GT	./.
chr1	53362231	.	G	.	.	LowGQX	END=53362234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53362235	.	G	.	.	LowGQX	.	GT	./.
chr1	53362236	.	C	.	.	LowGQX	END=53362239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53362240	.	G	.	.	LowGQX	.	GT	./.
chr1	53362241	.	C	.	.	LowGQX	END=53362242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53362243	.	C	.	.	LowGQX	.	GT	./.
chr1	53362244	.	T	.	.	LowGQX	END=53362249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53362250	.	C	.	.	LowGQX	.	GT	./.
chr1	53362251	.	G	.	.	LowGQX	END=53362252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53362253	.	T	.	.	LowGQX	.	GT	./.
chr1	53362254	.	C	.	.	LowGQX	END=53362255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53362256	.	C	.	.	LowGQX	.	GT	./.
chr1	53362257	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53362258	.	G	.	.	LowGQX	.	GT	./.
chr1	53362259	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53362260	.	T	.	.	LowGQX	.	GT	./.
chr1	53362261	.	T	.	.	LowGQX	END=53362268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53362269	.	T	.	.	LowGQX	.	GT	./.
chr1	53362270	.	C	.	.	LowGQX	END=53362272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53362273	.	C	.	.	LowGQX	.	GT	./.
chr1	53362274	.	A	.	.	LowGQX	END=53362277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53362278	.	A	.	.	LowGQX	.	GT	./.
chr1	53362279	.	G	.	.	LowGQX	END=53362280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53363083	.	G	.	.	LowGQX	END=53363182	GT	./.
chr1	53364762	.	C	.	.	LowGQX	END=53364900	GT	./.
chr1	53364901	.	G	.	.	LowGQX	END=53364905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53364906	.	A	.	.	LowGQX	END=53364907	GT	./.
chr1	53364908	.	C	.	.	LowGQX	END=53364912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53364913	.	A	.	.	LowGQX	END=53364916	GT	./.
chr1	53364917	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53364918	.	T	.	.	LowGQX	END=53364921	GT	./.
chr1	53370316	.	A	.	.	LowGQX	END=53370507	GT	./.
chr1	53370685	.	G	.	.	LowGQX	END=53370687	GT	./.
chr1	53370688	.	T	.	.	LowGQX	END=53370692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53370693	.	T	.	.	LowGQX	END=53370694	GT	./.
chr1	53370695	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53370696	.	T	.	.	LowGQX	.	GT	./.
chr1	53370697	.	T	.	.	LowGQX	END=53370698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53370699	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	53370700	.	G	.	.	LowGQX	END=53370703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53370704	.	A	.	.	LowGQX	.	GT	./.
chr1	53370705	.	C	.	.	LowGQX	END=53370714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53370715	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53370716	.	G	.	.	LowGQX	END=53370739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53370740	.	C	.	.	LowGQX	.	GT	./.
chr1	53370741	.	A	.	.	LowGQX	END=53370749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53370750	.	A	.	.	LowGQX	.	GT	./.
chr1	53370751	.	C	.	.	LowGQX	END=53370754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53370755	.	C	.	.	LowGQX	.	GT	./.
chr1	53370756	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53370757	.	A	.	.	LowGQX	.	GT	./.
chr1	53370758	.	G	.	.	LowGQX	END=53370762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53370763	.	C	.	.	LowGQX	.	GT	./.
chr1	53370764	.	T	.	.	LowGQX	END=53370765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	53370766	.	C	.	.	LowGQX	.	GT	./.
chr1	53370767	.	T	.	.	LowGQX	END=53370769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53370770	.	G	.	.	LowGQX	END=53370771	GT	./.
chr1	53370772	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	53370773	.	A	.	.	LowGQX	.	GT	./.
chr1	53370774	.	G	.	.	LowGQX	END=53370779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53370780	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	53370781	.	G	.	.	LowGQX	END=53370784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	53372054	.	G	.	.	LowGQX	END=53372283	GT	./.
chr1	53373534	.	C	.	.	LowGQX	END=53373633	GT	./.
chr1	53377232	.	A	.	.	LowGQX	END=53377314	GT	./.
chr1	53377315	.	G	.	.	LowGQX	END=53377331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53377379	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53377380	.	C	.	.	LowGQX	END=53377381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53377382	.	C	.	.	LowGQX	.	GT	./.
chr1	53377383	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53377384	.	C	.	.	LowGQX	END=53377387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53377388	.	T	.	.	LowGQX	.	GT	./.
chr1	53377389	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53377390	.	C	.	.	LowGQX	.	GT	./.
chr1	53377391	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53377392	.	T	.	.	LowGQX	END=53377394	GT	./.
chr1	53377395	.	C	.	.	LowGQX	END=53377410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53377411	.	T	.	.	LowGQX	.	GT	./.
chr1	53377412	.	T	.	.	LowGQX	END=53377413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53377414	.	C	.	.	LowGQX	.	GT	./.
chr1	53377415	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53377416	.	C	.	.	LowGQX	.	GT	./.
chr1	53377417	.	A	.	.	LowGQX	END=53377438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53377439	.	T	.	.	LowGQX	.	GT	./.
chr1	53377440	.	G	.	.	LowGQX	END=53377470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53377471	.	A	.	.	LowGQX	END=53377478	GT	./.
chr1	53379705	.	A	.	.	LowGQX	END=53379767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53379768	.	C	.	.	LowGQX	END=53379804	GT	./.
chr1	53380904	.	T	.	.	LowGQX	END=53381003	GT	./.
chr1	53383234	.	G	.	.	LowGQX	END=53383333	GT	./.
chr1	53387155	.	C	.	.	LowGQX	END=53387347	GT	./.
chr1	53393018	.	A	.	.	PASS	END=53393033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	53393034	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:69:60
chr1	53393035	.	G	.	.	PASS	END=53393040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	53393041	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:33:60
chr1	53393042	.	C	.	.	PASS	END=53393059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	53393060	.	G	.	.	PASS	END=53393164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	53393165	.	C	.	.	PASS	END=53393188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:81:60
chr1	53407417	.	A	.	.	PASS	END=53407426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:93:60
chr1	53407427	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:71:33:60
chr1	53407428	.	T	.	.	PASS	END=53407460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:84:60
chr1	53407461	.	T	.	.	PASS	END=53407542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	53407543	.	G	.	.	PASS	END=53407576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	53413630	.	C	.	.	PASS	END=53413687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	53413688	.	G	.	.	PASS	END=53413718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr1	53413719	.	G	.	.	PASS	END=53413765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	53413766	.	T	.	.	PASS	END=53413803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	53416376	.	G	.	.	PASS	END=53416413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	53416414	.	T	.	.	PASS	END=53416456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	53416457	.	A	.	.	PASS	END=53416513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	53416514	.	C	.	.	PASS	END=53416566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	53416567	.	T	.	.	PASS	END=53416585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	53416586	.	A	.	.	PASS	END=53416609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr1	53420361	.	T	.	.	PASS	END=53420403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	53420404	.	C	.	.	PASS	END=53420487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	53420488	.	T	.	.	PASS	END=53420516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	53420517	.	A	.	.	PASS	END=53420520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	53420521	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:50:60
chr1	53420522	.	A	.	.	PASS	END=53420527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	53427124	.	A	.	.	PASS	END=53427154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	53427155	.	A	.	.	PASS	END=53427197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	53427198	.	T	.	.	PASS	END=53427281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	53427282	.	A	.	.	PASS	END=53427346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	53427347	.	C	.	.	PASS	END=53427350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	53427351	.	A	.	.	PASS	END=53427352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	53440383	.	T	.	.	PASS	END=53440410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	53440411	.	C	.	.	PASS	END=53440469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	53440470	.	G	.	.	PASS	END=53440504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	53440505	.	G	.	.	PASS	END=53440519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	53440520	.	A	.	.	PASS	END=53440554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	53440555	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:99:60
chr1	53442304	.	A	.	.	PASS	END=53442324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	53442325	.	T	.	.	PASS	END=53442351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	53442352	.	T	.	.	PASS	END=53442378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	53442379	.	C	.	.	PASS	END=53442412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	53442413	.	T	.	.	PASS	END=53442489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	53442490	.	T	.	.	PASS	END=53442492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	53443838	.	C	.	.	PASS	END=53443850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	53443851	.	G	.	.	PASS	END=53443862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr1	53443863	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:75:60
chr1	53443864	.	G	.	.	PASS	END=53443880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	53443881	.	C	.	.	PASS	END=53443882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:75:60
chr1	53443883	.	T	.	.	PASS	END=53443902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	53443903	.	G	.	.	PASS	END=53443938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	53443939	.	T	.	.	PASS	END=53443957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	53443958	.	A	.	.	PASS	END=53444067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	53444068	.	T	.	.	PASS	END=53444090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	53446017	.	T	.	.	PASS	END=53446040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	53446041	.	T	.	.	PASS	END=53446062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	53446063	.	T	.	.	PASS	END=53446081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	53446082	.	G	.	.	PASS	END=53446215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	53446216	.	G	.	.	PASS	END=53446232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	53446233	.	G	.	.	PASS	END=53446234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	53446235	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:57:60
chr1	53446236	.	A	.	.	PASS	END=53446266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	53453650	.	T	.	.	PASS	END=53453661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	53453662	.	T	.	.	PASS	END=53453691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	53453692	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:54:60
chr1	53453693	.	T	.	.	PASS	END=53453715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	53453716	.	T	.	.	PASS	END=53453754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	53453755	.	T	.	.	PASS	END=53453762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	53453763	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:60:60
chr1	53453764	.	C	.	.	PASS	END=53453801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	53453802	.	G	.	.	PASS	END=53453817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	53453818	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:36:60
chr1	53453819	.	A	.	.	PASS	END=53453834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	53453835	.	T	.	.	PASS	END=53453857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	53453858	.	G	.	.	PASS	END=53453859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	53458850	.	G	.	.	PASS	END=53458947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	53458948	.	G	.	.	PASS	END=53458999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	53459000	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:99:60
chr1	53480511	.	G	.	.	PASS	END=53480523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:39:60
chr1	53480524	.	G	.	.	PASS	END=53480525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	53480526	.	T	.	.	PASS	END=53480533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	53480534	.	G	.	.	PASS	END=53480541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	53480542	.	C	.	.	PASS	END=53480543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	53480544	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:33:60
chr1	53480545	.	T	.	.	PASS	END=53480557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	53480558	.	T	.	.	PASS	END=53480567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	53480568	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:51:60
chr1	53480569	.	T	.	.	PASS	END=53480572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	53480573	.	T	.	.	PASS	END=53480627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr1	53480628	.	G	.	.	PASS	END=53480686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	53480687	.	T	.	.	PASS	END=53480709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	53480710	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:75:60
chr1	53480711	.	G	.	.	PASS	END=53480739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	53480740	.	T	.	.	PASS	END=53480766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	53493590	.	A	.	.	PASS	END=53493591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	53493592	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:53:60
chr1	53493593	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:99:60
chr1	53493594	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:72:60
chr1	53493595	.	T	.	.	PASS	END=53493625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	53493626	.	G	.	.	PASS	END=53493668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	53493669	.	G	.	.	PASS	END=53493753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	53493754	.	T	.	.	PASS	END=53493794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	53504538	.	A	.	.	PASS	END=53504558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	53504559	.	A	.	.	PASS	END=53504600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	53504601	.	T	.	.	PASS	END=53504751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	53504752	.	T	.	.	PASS	END=53504769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	53513479	.	T	.	.	PASS	END=53513490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	53513491	.	C	.	.	PASS	END=53513517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	53513518	.	T	.	.	PASS	END=53513632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	53513633	.	C	.	.	PASS	END=53513655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	53513656	.	C	.	.	PASS	END=53513672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	53513673	.	C	.	.	PASS	END=53513674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	53516230	.	A	.	.	PASS	END=53516281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	53516282	.	C	.	.	PASS	END=53516354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	53516355	.	G	.	.	PASS	END=53516371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	53516372	.	T	.	.	PASS	END=53516378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	53516379	.	A	.	.	PASS	END=53516390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	53516391	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:71:60
chr1	53516392	.	T	.	.	PASS	END=53516424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	53516425	.	T	.	.	PASS	END=53516427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	53527887	.	C	.	.	LowGQX	END=53528038	GT	./.
chr1	53532474	.	A	.	.	LowGQX	END=53532573	GT	./.
chr1	53535461	.	T	.	.	LowGQX	END=53535467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53535468	.	C	.	.	LowGQX	.	GT	./.
chr1	53535469	.	A	.	.	LowGQX	END=53535473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53535474	.	T	.	.	LowGQX	.	GT	./.
chr1	53535475	.	T	.	.	LowGQX	END=53535476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53535477	.	C	.	.	LowGQX	END=53535478	GT	./.
chr1	53535479	.	T	.	.	LowGQX	END=53535481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53535482	.	G	.	.	LowGQX	.	GT	./.
chr1	53535483	.	C	.	.	LowGQX	END=53535484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53535485	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53535486	.	T	.	.	LowGQX	END=53535492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53535493	.	C	G	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	53535494	.	A	.	.	LowGQX	END=53535498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53535499	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53535500	.	A	.	.	LowGQX	END=53535510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53535511	.	C	.	.	LowGQX	.	GT	./.
chr1	53535512	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53535513	.	C	.	.	LowGQX	.	GT	./.
chr1	53535514	.	C	.	.	LowGQX	END=53535517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53535518	.	T	.	.	LowGQX	.	GT	./.
chr1	53535519	.	G	.	.	LowGQX	END=53535520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53535521	.	A	.	.	LowGQX	.	GT	./.
chr1	53535522	.	G	.	.	LowGQX	END=53535525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53535526	.	C	.	.	LowGQX	.	GT	./.
chr1	53535527	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53535528	.	A	.	.	LowGQX	.	GT	./.
chr1	53535529	.	T	.	.	LowGQX	END=53535552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53535553	.	T	.	.	LowGQX	.	GT	./.
chr1	53535554	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53535555	.	C	.	.	LowGQX	END=53535557	GT	./.
chr1	53535558	.	C	.	.	LowGQX	END=53535563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53535564	.	C	.	.	LowGQX	.	GT	./.
chr1	53535565	.	T	.	.	LowGQX	END=53535581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53535582	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	53535583	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53535584	.	G	.	.	LowGQX	END=53535586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53535587	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53535588	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53535589	.	C	.	.	LowGQX	END=53535594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53535595	.	T	.	.	LowGQX	.	GT	./.
chr1	53535596	.	T	.	.	LowGQX	END=53535598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53535599	.	C	.	.	LowGQX	.	GT	./.
chr1	53535600	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53535601	.	T	.	.	LowGQX	.	GT	./.
chr1	53535602	.	G	.	.	LowGQX	END=53535609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53535610	.	C	.	.	LowGQX	.	GT	./.
chr1	53535611	.	A	.	.	LowGQX	END=53535635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53535636	.	A	.	.	LowGQX	END=53535777	GT	./.
chr1	53535778	.	G	.	.	LowGQX	END=53535797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53535798	.	C	.	.	LowGQX	.	GT	./.
chr1	53535799	.	C	.	.	LowGQX	END=53535813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53535814	.	A	.	.	LowGQX	.	GT	./.
chr1	53535815	.	G	.	.	LowGQX	END=53535832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53535833	.	T	.	.	LowGQX	.	GT	./.
chr1	53535834	.	C	.	.	LowGQX	END=53535836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53535837	.	C	.	.	LowGQX	.	GT	./.
chr1	53535838	.	A	.	.	LowGQX	END=53535850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53537204	.	T	.	.	LowGQX	END=53537303	GT	./.
chr1	53540261	.	A	.	.	LowGQX	END=53540329	GT	./.
chr1	53540330	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53540331	.	G	.	.	LowGQX	.	GT	./.
chr1	53540332	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53540333	.	C	.	.	LowGQX	.	GT	./.
chr1	53540334	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53540335	.	A	.	.	LowGQX	.	GT	./.
chr1	53540336	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53540337	.	A	.	.	LowGQX	.	GT	./.
chr1	53540338	.	A	.	.	LowGQX	END=53540339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53540340	.	A	.	.	LowGQX	END=53540341	GT	./.
chr1	53540342	.	G	.	.	LowGQX	END=53540343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53540344	.	T	.	.	LowGQX	.	GT	./.
chr1	53540345	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53540346	.	A	.	.	LowGQX	.	GT	./.
chr1	53540347	.	G	.	.	LowGQX	END=53540349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53540350	.	G	.	.	LowGQX	.	GT	./.
chr1	53540351	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53540352	.	T	.	.	LowGQX	END=53540355	GT	./.
chr1	53540356	.	G	.	.	LowGQX	END=53540360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53541532	.	A	.	.	LowGQX	END=53541645	GT	./.
chr1	53542860	.	A	.	.	LowGQX	END=53543020	GT	./.
chr1	53543355	.	A	.	.	LowGQX	END=53543474	GT	./.
chr1	53544035	.	A	.	.	LowGQX	END=53544361	GT	./.
chr1	53544362	.	G	.	.	LowGQX	END=53544433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53544434	.	A	.	.	LowGQX	.	GT	./.
chr1	53544435	.	G	.	.	LowGQX	END=53544438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53544439	.	G	.	.	LowGQX	.	GT	./.
chr1	53544440	.	C	.	.	LowGQX	END=53544452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53544453	.	A	.	.	LowGQX	.	GT	./.
chr1	53544454	.	C	.	.	LowGQX	END=53544481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53544482	.	T	A	9.30	LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=-0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr1	53544483	.	C	.	.	LowGQX	END=53544514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	53544515	.	C	.	.	LowGQX	END=53544596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	53544597	.	T	C	96.82	LowGQ;LowGQX	DP=5;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=19.36;SB=-75.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,5:5:9.03:129,9,0:60:9:1.000
chr1	53544598	.	G	.	.	LowGQX	END=53544603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	53544604	.	G	.	.	LowGQX	END=53544646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53544647	.	A	.	.	LowGQX	END=53544657	GT	./.
chr1	53544658	.	G	.	.	LowGQX	END=53544696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53546398	.	A	.	.	LowGQX	END=53546403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53546404	.	T	.	.	LowGQX	.	GT	./.
chr1	53546405	.	G	.	.	LowGQX	END=53546408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53546409	.	A	.	.	LowGQX	END=53546550	GT	./.
chr1	53547651	.	A	.	.	LowGQX	END=53547835	GT	./.
chr1	53553679	.	G	.	.	LowGQX	END=53553700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53553701	.	C	.	.	LowGQX	.	GT	./.
chr1	53553702	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	53553703	.	C	.	.	LowGQX	END=53553712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53553713	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	53553714	.	G	.	.	LowGQX	END=53553753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53553754	.	T	.	.	LowGQX	.	GT	./.
chr1	53553755	.	G	.	.	LowGQX	END=53553757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53553758	.	C	.	.	LowGQX	.	GT	./.
chr1	53553759	.	C	.	.	LowGQX	END=53553766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53553767	.	C	.	.	LowGQX	.	GT	./.
chr1	53553768	.	G	.	.	LowGQX	END=53553770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53553771	.	G	.	.	LowGQX	.	GT	./.
chr1	53553772	.	A	.	.	LowGQX	END=53553784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53553785	.	A	.	.	LowGQX	.	GT	./.
chr1	53553786	.	G	.	.	LowGQX	END=53553810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53553811	.	G	.	.	LowGQX	.	GT	./.
chr1	53553812	.	C	.	.	LowGQX	END=53553820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53553821	.	C	.	.	LowGQX	.	GT	./.
chr1	53553822	.	A	.	.	LowGQX	END=53553838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53553839	.	T	.	.	LowGQX	.	GT	./.
chr1	53553840	.	C	.	.	LowGQX	END=53553855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53553856	.	A	.	.	LowGQX	END=53553918	GT	./.
chr1	53554547	.	A	.	.	LowGQX	END=53554590	GT	./.
chr1	53554591	.	G	.	.	LowGQX	END=53554653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53555470	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555471	.	C	.	.	LowGQX	END=53555472	GT	./.
chr1	53555473	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555474	.	A	.	.	LowGQX	.	GT	./.
chr1	53555475	.	G	.	.	LowGQX	END=53555476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555477	.	C	.	.	LowGQX	.	GT	./.
chr1	53555478	.	C	.	.	LowGQX	END=53555482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555483	.	A	.	.	LowGQX	END=53555484	GT	./.
chr1	53555485	.	C	.	.	LowGQX	END=53555486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555487	.	G	.	.	LowGQX	END=53555492	GT	./.
chr1	53555493	.	A	.	.	LowGQX	END=53555496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555497	.	G	.	.	LowGQX	END=53555498	GT	./.
chr1	53555499	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555500	.	T	.	.	LowGQX	END=53555503	GT	./.
chr1	53555504	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555505	.	T	.	.	LowGQX	.	GT	./.
chr1	53555506	.	C	.	.	LowGQX	END=53555509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555510	.	G	.	.	LowGQX	.	GT	./.
chr1	53555511	.	G	.	.	LowGQX	END=53555514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555515	.	G	.	.	LowGQX	END=53555516	GT	./.
chr1	53555517	.	A	.	.	LowGQX	END=53555518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555519	.	T	.	.	LowGQX	END=53555520	GT	./.
chr1	53555521	.	C	.	.	LowGQX	END=53555523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555524	.	C	.	.	LowGQX	.	GT	./.
chr1	53555525	.	G	.	.	LowGQX	END=53555529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555530	.	T	.	.	LowGQX	.	GT	./.
chr1	53555531	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555532	.	A	.	.	LowGQX	.	GT	./.
chr1	53555533	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555534	.	C	.	.	LowGQX	END=53555537	GT	./.
chr1	53555538	.	A	.	.	LowGQX	END=53555539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555540	.	G	.	.	LowGQX	END=53555541	GT	./.
chr1	53555542	.	C	.	.	LowGQX	END=53555543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555544	.	A	.	.	LowGQX	END=53555545	GT	./.
chr1	53555546	.	G	.	.	LowGQX	END=53555547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555548	.	T	.	.	LowGQX	.	GT	./.
chr1	53555549	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555550	.	A	.	.	LowGQX	.	GT	./.
chr1	53555551	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555552	.	G	.	.	LowGQX	.	GT	./.
chr1	53555553	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555554	.	G	.	.	LowGQX	.	GT	./.
chr1	53555555	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555556	.	C	.	.	LowGQX	.	GT	./.
chr1	53555557	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555558	.	G	.	.	LowGQX	.	GT	./.
chr1	53555559	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555560	.	C	.	.	LowGQX	.	GT	./.
chr1	53555561	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555562	.	T	.	.	LowGQX	END=53555563	GT	./.
chr1	53555564	.	G	.	.	LowGQX	END=53555565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555566	.	G	.	.	LowGQX	END=53555569	GT	./.
chr1	53555570	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555571	.	C	.	.	LowGQX	END=53555572	GT	./.
chr1	53555573	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555574	.	G	.	.	LowGQX	.	GT	./.
chr1	53555575	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555576	.	T	.	.	LowGQX	END=53555577	GT	./.
chr1	53555578	.	C	.	.	LowGQX	END=53555582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555583	.	A	.	.	LowGQX	END=53555585	GT	./.
chr1	53555586	.	C	.	.	LowGQX	END=53555588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555589	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	53555590	.	C	.	.	LowGQX	END=53555596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555597	.	G	.	.	LowGQX	END=53555705	GT	./.
chr1	53555706	.	C	.	.	LowGQX	END=53555748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555749	.	A	.	.	LowGQX	.	GT	./.
chr1	53555750	.	G	.	.	LowGQX	END=53555782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53555783	.	A	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	53555784	.	A	.	.	LowGQX	END=53555791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556282	.	A	.	.	LowGQX	END=53556362	GT	./.
chr1	53556363	.	G	.	.	LowGQX	END=53556436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53556437	.	T	.	5.79	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.01:60:0
chr1	53556438	.	T	.	.	LowGQX	END=53556468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556469	.	T	.	.	LowGQX	.	GT	./.
chr1	53556470	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556471	.	T	.	.	LowGQX	.	GT	./.
chr1	53556472	.	G	.	.	LowGQX	END=53556474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556475	.	T	.	.	LowGQX	.	GT	./.
chr1	53556476	.	G	.	.	LowGQX	END=53556484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556485	.	T	.	.	LowGQX	END=53556488	GT	./.
chr1	53556489	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556490	.	G	.	.	LowGQX	.	GT	./.
chr1	53556491	.	G	.	.	LowGQX	END=53556499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556500	.	T	.	.	LowGQX	.	GT	./.
chr1	53556501	.	C	.	.	LowGQX	END=53556509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556510	.	A	.	.	LowGQX	.	GT	./.
chr1	53556511	.	C	.	.	LowGQX	END=53556512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556513	.	C	.	.	LowGQX	.	GT	./.
chr1	53556514	.	T	.	.	LowGQX	END=53556516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556517	.	T	.	.	LowGQX	.	GT	./.
chr1	53556518	.	C	.	.	LowGQX	END=53556519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556520	.	A	.	.	LowGQX	.	GT	./.
chr1	53556521	.	G	.	.	LowGQX	END=53556525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556526	.	G	.	.	LowGQX	.	GT	./.
chr1	53556527	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556528	.	T	.	.	LowGQX	.	GT	./.
chr1	53556529	.	G	.	.	LowGQX	END=53556530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556531	.	G	.	.	LowGQX	.	GT	./.
chr1	53556532	.	G	.	.	LowGQX	END=53556534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556535	.	T	.	.	LowGQX	.	GT	./.
chr1	53556536	.	C	.	.	LowGQX	END=53556583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556584	.	T	.	.	LowGQX	.	GT	./.
chr1	53556585	.	T	.	.	LowGQX	END=53556624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556625	.	C	.	.	LowGQX	.	GT	./.
chr1	53556626	.	G	.	.	LowGQX	END=53556635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556636	.	G	.	.	LowGQX	END=53556637	GT	./.
chr1	53556638	.	G	.	.	LowGQX	END=53556640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556641	.	C	.	.	LowGQX	.	GT	./.
chr1	53556642	.	T	.	.	LowGQX	END=53556643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556644	.	A	.	.	LowGQX	.	GT	./.
chr1	53556645	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556646	.	T	.	.	LowGQX	.	GT	./.
chr1	53556647	.	T	.	.	LowGQX	END=53556648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556649	.	G	.	.	LowGQX	.	GT	./.
chr1	53556650	.	T	.	.	LowGQX	END=53556651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53556652	.	C	.	.	LowGQX	.	GT	./.
chr1	53556653	.	T	.	.	LowGQX	END=53556655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53558224	.	A	.	.	LowGQX	END=53558461	GT	./.
chr1	53559131	.	A	.	.	LowGQX	END=53559234	GT	./.
chr1	53569016	.	A	.	.	LowGQX	END=53569091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53569092	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	53569093	.	C	.	.	LowGQX	END=53569124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	53569125	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	53569126	.	T	.	.	LowGQX	END=53569192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	53569193	.	T	.	.	LowGQX	END=53569242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53571322	.	C	.	.	LowGQX	END=53571475	GT	./.
chr1	53574234	.	C	.	.	LowGQX	END=53574333	GT	./.
chr1	53580428	.	A	.	.	LowGQX	END=53580647	GT	./.
chr1	53600012	.	C	.	.	LowGQX	END=53600111	GT	./.
chr1	53607985	.	A	.	.	LowGQX	END=53608123	GT	./.
chr1	53662505	.	C	.	.	PASS	END=53662525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	53662526	.	G	.	.	PASS	END=53662597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	53662598	.	C	.	.	PASS	END=53662709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	53662710	.	G	.	.	PASS	END=53662822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	53662823	.	C	A	1582.18	PASS	BaseQRankSum=-0.154;DP=140;Dels=0.00;FS=1.504;HRun=2;HaplotypeScore=26.7541;MQ=60;MQ0=0;MQRankSum=-0.997;QD=11.30;ReadPosRankSum=-0.221;SB=-660.35	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:67,73:140:99:1612,0,1653:60:99:0.521
chr1	53662824	.	C	.	.	PASS	END=53662848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	53662849	.	C	.	.	PASS	END=53662860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	53662861	.	T	.	.	PASS	END=53662874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	53666340	.	T	.	.	PASS	END=53666347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	53666348	.	T	.	.	PASS	END=53666356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	53666357	.	T	.	.	PASS	END=53666361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	53666362	.	G	.	.	PASS	END=53666393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	53666394	.	G	.	.	PASS	END=53666426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	53666427	.	A	.	.	PASS	END=53666499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	53666500	.	A	.	.	PASS	END=53666517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	53666518	.	C	.	.	PASS	END=53666522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	53667944	.	A	.	.	PASS	END=53667970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	53667971	.	T	.	.	PASS	END=53668064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:93:60
chr1	53668065	.	C	.	.	PASS	END=53668093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	53668094	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:69:60
chr1	53668095	.	A	.	.	PASS	END=53668111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	53668112	.	T	.	.	PASS	END=53668133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	53668134	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:39:60
chr1	53668135	.	C	.	.	PASS	END=53668140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	53668141	.	C	.	.	PASS	END=53668152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	53675636	.	T	.	.	PASS	END=53675689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	53675690	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:63:60
chr1	53675691	.	C	.	.	PASS	END=53675698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	53675699	.	A	.	.	PASS	END=53675702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	53675703	.	G	.	.	PASS	END=53675735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	53675736	.	C	.	.	PASS	END=53675772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	53675773	.	T	.	.	PASS	END=53675794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	53675795	.	C	.	.	PASS	END=53675835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:278:99:60
chr1	53675836	.	A	.	.	PASS	END=53675947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:335:99:60
chr1	53675948	.	G	.	.	PASS	END=53676035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:433:99:60
chr1	53676036	.	T	.	.	PASS	END=53676183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:489:99:60
chr1	53676184	.	A	.	.	PASS	END=53676256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:370:99:60
chr1	53676257	.	A	.	.	PASS	END=53676447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:290:99:60
chr1	53676448	.	G	A	4281.03	PASS	BaseQRankSum=3.383;DP=339;Dels=0.00;FS=1.904;HRun=0;HaplotypeScore=36.5836;MQ=60;MQ0=0;MQRankSum=-1.299;QD=12.63;ReadPosRankSum=1.751;SB=-2357.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:158,178:338:99:4281,0,3901:60:99:0.530
chr1	53676449	.	T	.	.	PASS	END=53676514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:279:99:60
chr1	53676515	.	A	.	.	PASS	END=53676626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr1	53676627	.	C	.	.	PASS	END=53676740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	53676741	.	A	.	.	PASS	END=53676783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	53676784	.	G	.	.	PASS	END=53676801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	53676802	.	T	.	.	PASS	END=53676818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	53676819	.	T	.	.	PASS	END=53676842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	53676843	.	T	.	.	PASS	END=53676848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	53676849	.	C	.	.	PASS	END=53676872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	53676873	.	A	.	.	PASS	END=53676874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	53676875	.	A	.	.	PASS	END=53676879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	53676880	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:54:60
chr1	53676881	.	G	.	.	PASS	END=53676891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	53676892	.	T	.	.	PASS	END=53676893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	53676894	.	T	.	.	PASS	END=53676904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	53676905	.	C	.	.	PASS	END=53676917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	53676918	.	T	.	.	PASS	END=53676920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	53676921	.	T	.	.	PASS	END=53676923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	53676924	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:33:60
chr1	53676925	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:57:60
chr1	53676926	.	A	.	.	PASS	END=53676929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	53676930	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	53676931	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:3:60
chr1	53676932	.	A	.	.	PASS	END=53676943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	53676944	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	53676945	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	53676946	.	G	.	.	PASS	END=53676967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	53676968	.	A	.	.	LowGQX	END=53676977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	53676978	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	53676979	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	53676980	.	A	.	.	LowGQX	END=53676989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	53676990	.	G	.	.	LowGQX	END=53676992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	53676993	.	T	.	.	LowGQX	END=53677000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	53677001	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	53677002	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	53677003	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	53677004	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	53677005	.	G	.	.	LowGQX	END=53677006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	53677007	.	G	.	.	LowGQX	END=53677012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	53677013	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:1:60
chr1	53677014	.	G	.	.	LowGQX	END=53677016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	53677017	.	C	.	.	LowGQX	END=53677021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	53677022	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	53677023	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	53677024	.	C	.	.	LowGQX	END=53677026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	53677027	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	53677028	.	T	.	.	LowGQX	END=53677034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	53677035	.	T	.	.	LowGQX	END=53677037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	53677038	.	T	.	.	LowGQX	END=53677042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53678885	.	T	.	.	LowGQX	END=53678890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	53678891	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	53678892	.	C	.	.	LowGQX	END=53678894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	53678895	.	T	.	.	PASS	END=53678896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	53678897	.	C	.	.	LowGQX	END=53678898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	53678899	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	53678900	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	53678901	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	53678902	.	C	.	.	PASS	END=53678905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	53678906	.	G	.	.	LowGQX	END=53678907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	53678908	.	C	.	.	PASS	END=53678914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	53678915	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	53678916	.	T	.	.	PASS	END=53678917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	53678918	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	53678919	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	53678920	.	A	.	.	LowGQX	END=53678921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	53678922	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	53678923	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	53678924	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	53678925	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	53678926	.	T	.	.	PASS	END=53678927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	53678928	.	T	.	.	LowGQX	END=53678929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	53678930	.	T	.	.	PASS	END=53678933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	53678934	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	53678935	.	G	.	.	PASS	END=53678943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	53678944	.	T	.	.	PASS	END=53678947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	53678948	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:21:60
chr1	53678949	.	C	.	.	PASS	END=53678955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	53678956	.	T	.	.	PASS	END=53678961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	53678962	.	G	.	.	PASS	END=53678993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	53678994	.	C	.	.	PASS	END=53679000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	53679001	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:24:60
chr1	53679002	.	C	.	.	PASS	END=53679009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	53679010	.	T	.	.	PASS	END=53679030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	53679031	.	C	.	.	PASS	END=53679047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	53679048	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:60:60
chr1	53679049	.	C	.	.	PASS	END=53679050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	53679051	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:75:60
chr1	53679052	.	T	.	.	PASS	END=53679070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	53679071	.	G	.	.	PASS	END=53679128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	53679129	.	G	.	.	PASS	END=53679176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	53679177	.	A	.	.	PASS	END=53679204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:94:60
chr1	53679205	.	T	.	.	PASS	END=53679224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	53679225	.	A	.	.	PASS	END=53679227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	53679228	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:75:60
chr1	53679229	.	A	G	518.72	PASS	BaseQRankSum=-1.993;DP=39;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=-0.198;QD=13.30;ReadPosRankSum=0.137;SB=-256.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:12,27:39:99:549,0,289:60:99:0.692
chr1	53679230	.	T	.	.	PASS	END=53679246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	53679247	.	G	.	.	PASS	END=53679255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	53679256	.	A	.	.	PASS	END=53679275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	53679276	.	C	.	.	PASS	END=53679286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	53679287	.	C	.	.	PASS	END=53679298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	53679299	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:36:60
chr1	53679300	.	C	.	.	PASS	END=53679316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	53679317	.	G	.	.	PASS	END=53679318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	53680320	.	A	.	.	LowGQX	END=53680419	GT	./.
chr1	53681646	.	G	.	.	LowGQX	END=53681745	GT	./.
chr1	53682443	.	T	.	.	LowGQX	END=53682447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53682448	.	A	.	.	LowGQX	.	GT	./.
chr1	53682449	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53682450	.	A	.	.	LowGQX	.	GT	./.
chr1	53682451	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53682452	.	A	.	.	LowGQX	.	GT	./.
chr1	53682453	.	C	.	.	LowGQX	END=53682457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53682458	.	G	.	.	LowGQX	.	GT	./.
chr1	53682459	.	G	.	.	LowGQX	END=53682474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53682475	.	T	.	.	LowGQX	.	GT	./.
chr1	53682476	.	T	.	.	LowGQX	END=53682477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53682478	.	A	.	.	LowGQX	.	GT	./.
chr1	53682479	.	A	.	.	LowGQX	END=53682492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53682493	.	A	.	.	LowGQX	.	GT	./.
chr1	53682494	.	A	.	.	LowGQX	END=53682507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53682508	.	C	.	.	LowGQX	END=53682542	GT	./.
chr1	53683810	.	C	.	.	LowGQX	END=53683909	GT	./.
chr1	53684077	.	C	.	.	LowGQX	END=53684176	GT	./.
chr1	53684518	.	G	.	.	LowGQX	END=53684617	GT	./.
chr1	53685925	.	G	.	.	LowGQX	END=53686024	GT	./.
chr1	53686135	.	C	.	.	LowGQX	END=53686294	GT	./.
chr1	53692665	.	A	.	.	LowGQX	END=53692818	GT	./.
chr1	53694482	.	A	.	.	LowGQX	END=53694635	GT	./.
chr1	53699212	.	A	.	.	LowGQX	END=53699326	GT	./.
chr1	53701229	.	A	.	.	LowGQX	END=53701246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53701247	.	A	.	.	LowGQX	.	GT	./.
chr1	53701248	.	C	.	.	LowGQX	END=53701251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53701252	.	T	.	.	LowGQX	.	GT	./.
chr1	53701253	.	T	.	.	LowGQX	END=53701263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53701264	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53701265	.	A	.	.	LowGQX	.	GT	./.
chr1	53701266	.	C	.	.	LowGQX	END=53701272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53701273	.	C	.	.	LowGQX	.	GT	./.
chr1	53701274	.	T	.	.	LowGQX	END=53701282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53701283	.	C	.	.	LowGQX	.	GT	./.
chr1	53701284	.	T	.	.	LowGQX	END=53701286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53701287	.	T	.	.	LowGQX	.	GT	./.
chr1	53701288	.	G	.	.	LowGQX	END=53701290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53701291	.	G	.	.	LowGQX	.	GT	./.
chr1	53701292	.	G	.	.	LowGQX	END=53701293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53701294	.	A	.	.	LowGQX	.	GT	./.
chr1	53701295	.	T	.	.	LowGQX	END=53701300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53701301	.	A	.	.	LowGQX	.	GT	./.
chr1	53701302	.	A	.	.	LowGQX	END=53701316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53701317	.	C	.	.	LowGQX	.	GT	./.
chr1	53701318	.	A	.	.	LowGQX	END=53701320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53701321	.	A	.	.	LowGQX	.	GT	./.
chr1	53701322	.	A	.	.	LowGQX	END=53701325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53701326	.	A	.	.	LowGQX	END=53701327	GT	./.
chr1	53701328	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53704027	.	T	.	.	LowGQX	END=53704044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	53704045	.	A	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	53704046	.	C	.	.	LowGQX	END=53704126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	53712598	.	A	.	.	PASS	END=53712620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	53712621	.	G	.	.	PASS	END=53712634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	53712635	.	A	.	.	PASS	END=53712659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	53712660	.	C	.	.	PASS	END=53712687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	53712688	.	C	.	.	PASS	END=53712726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	53712727	.	C	T	1686.11	PASS	BaseQRankSum=3.010;DP=143;Dels=0.00;FS=0.663;HRun=1;HaplotypeScore=2.8935;MQ=60;MQ0=0;MQRankSum=-1.084;QD=11.79;ReadPosRankSum=1.997;SB=-769.05	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:72,71:143:99:1716,0,1636:60:99:0.497
chr1	53712728	.	G	.	.	PASS	END=53712759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	53715050	.	A	.	.	PASS	END=53715094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	53715095	.	A	.	.	PASS	END=53715188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	53715189	.	A	.	.	PASS	END=53715204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	53715205	.	T	.	.	PASS	END=53715230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	53716360	.	A	.	.	PASS	END=53716365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	53716366	.	G	.	.	PASS	END=53716379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	53716380	.	A	.	.	PASS	END=53716398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	53716399	.	A	.	.	PASS	END=53716415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	53716416	.	G	A	429.25	PASS	BaseQRankSum=1.845;DP=54;Dels=0.00;FS=4.059;HRun=0;HaplotypeScore=7.6276;MQ=60;MQ0=0;MQRankSum=0.053;QD=7.95;ReadPosRankSum=-0.940;SB=-302.70	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,21:54:99:459,0,801:60:99:0.389
chr1	53716417	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:99:60
chr1	53716418	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:69:60
chr1	53716419	.	T	.	.	PASS	END=53716511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:83:60
chr1	53716512	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr1	53716513	.	A	.	.	PASS	END=53716529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	53716530	.	C	.	.	PASS	END=53716536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	53720774	.	G	.	.	PASS	END=53720789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	53720790	.	T	.	.	PASS	END=53720873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	53722910	.	A	.	.	PASS	END=53722913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	53722914	.	T	.	.	PASS	END=53722940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	53722941	.	C	.	.	PASS	END=53722950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	53722951	.	A	.	.	PASS	END=53723016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	53723017	.	T	.	.	PASS	END=53723031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	53723032	.	T	.	.	PASS	END=53723036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	53723037	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:21:60
chr1	53723038	.	A	.	.	PASS	END=53723042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	53723043	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:48:60
chr1	53723044	.	A	.	.	PASS	END=53723055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	53723056	.	T	.	.	PASS	END=53723059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr1	53723060	.	C	.	.	PASS	END=53723068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	53723069	.	T	.	.	PASS	END=53723075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	53723076	.	G	.	.	PASS	END=53723088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	53723089	.	T	.	.	PASS	END=53723113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	53723114	.	C	.	.	PASS	END=53723131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	53723132	.	A	.	.	PASS	END=53723134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	53723135	.	T	.	.	PASS	END=53723138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	53723989	.	A	.	.	PASS	END=53724008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	53724009	.	T	.	.	PASS	END=53724115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	53724116	.	T	.	.	PASS	END=53724143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	53724144	.	C	.	.	PASS	END=53724145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	53726134	.	A	.	.	PASS	END=53726155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	53726156	.	T	.	.	PASS	END=53726259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	53726260	.	T	.	.	PASS	END=53726279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	53727738	.	A	.	.	PASS	END=53727782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	53727783	.	G	.	.	PASS	END=53727865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	53727866	.	C	.	.	PASS	END=53727881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	53728116	.	A	.	.	PASS	END=53728139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	53728140	.	T	.	.	PASS	END=53728230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	53728231	.	A	.	.	PASS	END=53728238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	53729839	.	A	.	.	PASS	END=53729864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	53729865	.	G	.	.	PASS	END=53730007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	53730008	.	C	.	.	PASS	END=53730064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	53730065	.	G	.	.	PASS	END=53730070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	53732143	.	A	.	.	PASS	END=53732156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	53732157	.	C	.	.	PASS	END=53732279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:269:99:60
chr1	53732280	.	T	.	.	PASS	END=53732305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr1	53732306	.	T	.	.	PASS	END=53732314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	53732315	.	G	T	2187.63	PASS	BaseQRankSum=4.141;DP=164;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=9.5196;MQ=60;MQ0=0;MQRankSum=0.928;QD=13.34;ReadPosRankSum=-0.530;SB=-818.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:81,83:164:99:2218,0,2130:60:99:0.506
chr1	53732316	.	C	.	.	PASS	END=53732326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	53736698	.	A	.	.	PASS	END=53736743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	53736744	.	G	.	.	PASS	END=53736827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	53736897	.	A	.	.	PASS	END=53736978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	53736979	.	T	.	.	PASS	END=53737019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	53737020	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:95:99:60
chr1	53738246	.	T	.	.	LowGQX	END=53738265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53738266	.	A	.	.	LowGQX	.	GT	./.
chr1	53738267	.	C	.	.	LowGQX	END=53738325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53738326	.	A	.	.	LowGQX	.	GT	./.
chr1	53738327	.	G	.	.	LowGQX	END=53738345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53740372	.	C	.	.	LowGQX	END=53740492	GT	./.
chr1	53741301	.	A	.	.	PASS	END=53741319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	53741320	.	T	.	.	PASS	END=53741339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	53741340	.	G	.	.	PASS	END=53741427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	53742351	.	G	.	.	PASS	END=53742388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:84:60
chr1	53742389	.	T	.	.	PASS	END=53742425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	53742426	.	T	.	.	PASS	END=53742432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	53742433	.	A	.	.	PASS	END=53742434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	53742435	.	T	.	.	PASS	END=53742441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	53742442	.	T	.	.	PASS	END=53742463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	53742464	.	G	.	.	PASS	END=53742465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	53742466	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:60
chr1	53742467	.	G	.	.	PASS	END=53742468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	53742469	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:6:60
chr1	53742470	.	G	.	.	PASS	END=53742473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	53742474	.	G	.	.	PASS	END=53742481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	53742482	.	C	.	.	LowGQX	END=53742489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	53742490	.	T	.	.	LowGQX	END=53742493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	53742494	.	C	.	.	LowGQX	END=53742496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	53742497	.	G	.	.	LowGQX	END=53742498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	53742499	.	G	.	.	LowGQX	END=53742500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	53742501	.	C	.	.	LowGQX	END=53742505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	53742506	.	A	.	3.15	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:0:60:0
chr1	53742507	.	C	.	.	LowGQX	END=53742516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr1	53742517	.	G	.	.	PASS	END=53742528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	53742529	.	C	.	.	PASS	END=53742552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:33:60
chr1	53742553	.	A	.	.	PASS	END=53742567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:42:60
chr1	53742568	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:35:12:60
chr1	53742569	.	C	.	.	PASS	END=53742608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:54:60
chr1	53742609	.	C	.	.	PASS	END=53742639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:66:60
chr1	53742640	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:48:60
chr1	53742641	.	T	.	.	PASS	END=53742646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr1	53742647	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:58:60
chr1	53742648	.	C	.	.	PASS	END=53742650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	53742651	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:58:60
chr1	53742652	.	G	.	.	PASS	END=53742665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	53742666	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:69:60
chr1	53742667	.	C	.	.	PASS	END=53742757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	53742758	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:51:60
chr1	53742759	.	G	.	.	PASS	END=53742760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr1	53746257	.	A	.	.	PASS	END=53746289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	53746290	.	C	.	.	PASS	END=53746357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	53746358	.	T	.	.	PASS	END=53746385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	53746386	.	G	.	.	PASS	END=53746389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	53755237	.	A	.	.	PASS	END=53755265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	53755266	.	C	.	.	PASS	END=53755353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	53755354	.	C	.	.	PASS	END=53755363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	53792543	.	A	.	.	PASS	END=53792573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	53792574	.	C	.	.	PASS	END=53792642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	53792643	.	T	.	.	PASS	END=53792666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	53793418	.	G	.	.	LowGQX	END=53793420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	53793421	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	53793422	.	G	.	.	LowGQX	END=53793423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	53793424	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	53793425	.	C	.	.	LowGQX	END=53793438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	53793439	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	53793440	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	53793441	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	53793442	.	A	.	.	LowGQX	END=53793446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	53793447	.	C	.	.	PASS	END=53793448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	53793449	.	G	.	.	LowGQX	END=53793450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:27:60
chr1	53793451	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	53793452	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:21:60
chr1	53793453	.	G	.	.	PASS	END=53793455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	53793456	.	C	.	.	LowGQX	END=53793457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:27:60
chr1	53793458	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	53793459	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	53793460	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	53793461	.	C	.	.	LowGQX	END=53793463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:60
chr1	53793464	.	G	.	.	PASS	END=53793480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	53793481	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:21:60
chr1	53793482	.	C	.	.	PASS	END=53793488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	53793489	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	53793490	.	G	.	.	PASS	END=53793492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	53793493	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	53793494	.	C	.	.	PASS	END=53793495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	53793496	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	53793497	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	53793498	.	A	.	.	LowGQX	END=53793505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	53793506	.	G	.	.	PASS	END=53793507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	53793508	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	53793509	.	G	.	.	PASS	END=53793510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	53793511	.	T	.	.	LowGQX	END=53793512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	53793513	.	C	.	.	PASS	END=53793514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	53793515	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	53793516	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:60
chr1	53793517	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	53793518	.	G	.	.	PASS	END=53793521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	53793522	.	C	.	.	LowGQX	END=53793523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:60
chr1	53793524	.	G	.	.	PASS	END=53793525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	53793526	.	A	.	.	LowGQX	END=53793528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:60
chr1	53793529	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	53793530	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	53793531	.	C	.	.	PASS	END=53793535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	53793536	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:0:60
chr1	53793537	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	53793538	.	A	.	.	LowGQX	END=53793539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:60
chr1	53793540	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	53793541	.	A	.	.	LowGQX	END=53793557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	53793558	.	G	.	.	LowGQX	END=53793559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	53793560	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	53793561	.	A	.	.	LowGQX	END=53793570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	53793571	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	53793572	.	C	.	.	LowGQX	END=53793586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	53925115	.	C	.	.	LowGQX	END=53925148	GT	./.
chr1	53925149	.	C	.	.	LowGQX	END=53925153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925154	.	A	.	.	LowGQX	END=53925157	GT	./.
chr1	53925158	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925159	.	C	.	.	LowGQX	END=53925160	GT	./.
chr1	53925161	.	C	.	.	LowGQX	END=53925162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925163	.	A	.	.	LowGQX	END=53925165	GT	./.
chr1	53925166	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925167	.	G	.	.	LowGQX	.	GT	./.
chr1	53925168	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925169	.	A	.	.	LowGQX	END=53925171	GT	./.
chr1	53925172	.	A	.	.	LowGQX	END=53925180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925181	.	T	.	.	LowGQX	.	GT	./.
chr1	53925182	.	T	.	.	LowGQX	END=53925186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925187	.	G	.	.	LowGQX	.	GT	./.
chr1	53925188	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925189	.	G	.	.	LowGQX	END=53925190	GT	./.
chr1	53925191	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925192	.	C	.	.	LowGQX	END=53925193	GT	./.
chr1	53925194	.	T	.	.	LowGQX	END=53925197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925198	.	G	.	.	LowGQX	.	GT	./.
chr1	53925199	.	G	.	.	LowGQX	END=53925200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925201	.	A	.	.	LowGQX	.	GT	./.
chr1	53925202	.	C	.	.	LowGQX	END=53925204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925205	.	G	.	.	LowGQX	.	GT	./.
chr1	53925206	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925207	.	G	.	.	LowGQX	END=53925208	GT	./.
chr1	53925209	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925210	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53925211	.	A	.	.	LowGQX	.	GT	./.
chr1	53925212	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925213	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53925214	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925215	.	G	.	.	LowGQX	.	GT	./.
chr1	53925216	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53925217	.	C	.	.	LowGQX	.	GT	./.
chr1	53925218	.	G	.	.	LowGQX	END=53925219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925220	.	T	.	.	LowGQX	.	GT	./.
chr1	53925221	.	G	.	.	LowGQX	END=53925226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925227	.	A	.	.	LowGQX	.	GT	./.
chr1	53925228	.	G	.	.	LowGQX	END=53925230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925231	.	C	.	.	LowGQX	.	GT	./.
chr1	53925232	.	C	.	.	LowGQX	END=53925234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925235	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53925236	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925237	.	C	.	.	LowGQX	.	GT	./.
chr1	53925238	.	G	.	.	LowGQX	END=53925242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925243	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53925244	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925245	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53925246	.	C	.	.	LowGQX	END=53925251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925252	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53925253	.	A	.	.	LowGQX	END=53925254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925255	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53925256	.	T	.	.	LowGQX	END=53925262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925263	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	53925264	.	C	.	.	LowGQX	END=53925267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925268	.	A	.	.	LowGQX	.	GT	./.
chr1	53925269	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925270	.	G	.	2.30	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0:60:0
chr1	53925271	.	A	.	.	LowGQX	.	GT	./.
chr1	53925272	.	T	.	.	LowGQX	END=53925276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925277	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53925278	.	C	.	.	LowGQX	END=53925282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925283	.	C	.	.	LowGQX	.	GT	./.
chr1	53925284	.	A	.	.	LowGQX	END=53925288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925289	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53925290	.	T	.	.	LowGQX	END=53925296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53925297	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53925298	.	A	.	.	LowGQX	END=53925301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925302	.	A	.	.	LowGQX	.	GT	./.
chr1	53925303	.	G	.	.	LowGQX	END=53925305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925306	.	C	.	.	LowGQX	.	GT	./.
chr1	53925307	.	G	.	.	LowGQX	END=53925309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925310	.	G	.	.	LowGQX	.	GT	./.
chr1	53925311	.	A	.	.	LowGQX	END=53925312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925313	.	G	.	.	LowGQX	.	GT	./.
chr1	53925314	.	A	.	.	LowGQX	END=53925317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925318	.	G	.	.	LowGQX	END=53925320	GT	./.
chr1	53925321	.	G	.	.	LowGQX	END=53925322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925323	.	A	.	.	LowGQX	.	GT	./.
chr1	53925324	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925325	.	G	.	.	LowGQX	END=53925326	GT	./.
chr1	53925327	.	G	.	.	LowGQX	END=53925329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925330	.	C	.	.	LowGQX	.	GT	./.
chr1	53925331	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925332	.	T	.	.	LowGQX	.	GT	./.
chr1	53925333	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925334	.	T	.	.	LowGQX	.	GT	./.
chr1	53925335	.	G	.	.	LowGQX	END=53925338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925339	.	G	.	.	LowGQX	.	GT	./.
chr1	53925340	.	C	.	.	LowGQX	END=53925342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925343	.	G	.	.	LowGQX	.	GT	./.
chr1	53925344	.	G	.	.	LowGQX	END=53925351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53925352	.	C	.	.	LowGQX	END=53925711	GT	./.
chr1	53927144	.	A	.	.	LowGQX	END=53927320	GT	./.
chr1	53930237	.	G	.	.	LowGQX	END=53930245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930246	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53930247	.	T	.	.	LowGQX	END=53930279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930280	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	53930281	.	T	.	.	LowGQX	END=53930282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930283	.	C	.	.	LowGQX	.	GT	./.
chr1	53930284	.	G	.	.	LowGQX	END=53930285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930286	.	C	.	.	LowGQX	.	GT	./.
chr1	53930287	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930288	.	C	.	.	LowGQX	.	GT	./.
chr1	53930289	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930290	.	C	.	.	LowGQX	.	GT	./.
chr1	53930291	.	T	.	.	LowGQX	END=53930292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930293	.	C	.	.	LowGQX	.	GT	./.
chr1	53930294	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930295	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53930296	.	T	.	.	LowGQX	END=53930297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930298	.	T	.	.	LowGQX	.	GT	./.
chr1	53930299	.	G	.	.	LowGQX	END=53930300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930301	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53930302	.	C	.	.	LowGQX	.	GT	./.
chr1	53930303	.	C	.	.	LowGQX	END=53930309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930310	.	G	.	.	LowGQX	.	GT	./.
chr1	53930311	.	T	.	.	LowGQX	END=53930321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930322	.	G	.	.	LowGQX	.	GT	./.
chr1	53930323	.	G	.	.	LowGQX	END=53930326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930327	.	A	.	.	LowGQX	.	GT	./.
chr1	53930328	.	G	.	.	LowGQX	END=53930333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930334	.	C	.	.	LowGQX	END=53930335	GT	./.
chr1	53930336	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53930337	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930338	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53930339	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930340	.	A	.	.	LowGQX	.	GT	./.
chr1	53930341	.	G	.	.	LowGQX	END=53930348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930349	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53930350	.	T	.	.	LowGQX	END=53930352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930353	.	C	.	.	LowGQX	.	GT	./.
chr1	53930354	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	53930355	.	C	.	.	LowGQX	END=53930359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930360	.	G	.	.	LowGQX	.	GT	./.
chr1	53930361	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930362	.	C	.	.	LowGQX	.	GT	./.
chr1	53930363	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930364	.	C	.	.	LowGQX	.	GT	./.
chr1	53930365	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53930366	.	G	.	.	LowGQX	.	GT	./.
chr1	53930367	.	C	.	.	LowGQX	END=53930370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53930371	.	T	.	.	LowGQX	END=53930388	GT	./.
chr1	53930389	.	T	.	.	LowGQX	END=53930392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53930393	.	A	.	.	LowGQX	.	GT	./.
chr1	53930394	.	C	.	.	LowGQX	END=53930442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53930443	.	T	.	.	LowGQX	.	GT	./.
chr1	53930444	.	C	.	.	LowGQX	END=53930449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53930450	.	G	.	.	LowGQX	.	GT	./.
chr1	53930451	.	C	.	.	LowGQX	END=53930452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53930453	.	A	.	.	LowGQX	.	GT	./.
chr1	53930454	.	C	.	.	LowGQX	END=53930455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53930456	.	G	.	.	LowGQX	.	GT	./.
chr1	53930457	.	C	.	.	LowGQX	END=53930458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53930459	.	A	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	53930460	.	C	.	.	LowGQX	END=53930461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53930462	.	A	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	53930463	.	C	.	.	LowGQX	END=53930464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53930465	.	A	.	.	LowGQX	.	GT	./.
chr1	53930466	.	C	.	.	LowGQX	END=53930467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53930468	.	T	.	.	LowGQX	END=53930469	GT	./.
chr1	53930470	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53930471	.	A	.	.	LowGQX	END=53930555	GT	./.
chr1	53930556	.	C	.	.	LowGQX	END=53930559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53930560	.	G	.	.	LowGQX	END=53930561	GT	./.
chr1	53930562	.	A	.	.	LowGQX	END=53930572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53930573	.	A	.	.	LowGQX	.	GT	./.
chr1	53930574	.	G	.	.	LowGQX	END=53930575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53930576	.	A	.	.	LowGQX	.	GT	./.
chr1	53930577	.	A	.	.	LowGQX	END=53930586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53932252	.	T	.	.	LowGQX	.	GT	./.
chr1	53932253	.	C	.	.	LowGQX	END=53932289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53932290	.	G	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr1	53932291	.	T	.	.	LowGQX	END=53932314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	53932315	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	53932316	.	C	.	.	LowGQX	END=53932351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53972290	.	C	.	.	LowGQX	END=53972451	GT	./.
chr1	53974791	.	A	.	.	LowGQX	END=53974793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53974794	.	T	.	.	LowGQX	END=53974962	GT	./.
chr1	53975509	.	G	.	.	LowGQX	END=53975614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53975615	.	A	.	.	LowGQX	.	GT	./.
chr1	53975616	.	A	.	.	LowGQX	END=53975648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	53975649	.	C	T	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	53975650	.	C	.	.	LowGQX	END=53975716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53975717	.	T	.	.	LowGQX	END=53975719	GT	./.
chr1	53980275	.	G	.	.	LowGQX	END=53980456	GT	./.
chr1	53986305	.	A	.	.	LowGQX	END=53986441	GT	./.
chr1	53990448	.	A	.	.	LowGQX	END=53990456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	53990457	.	C	.	.	LowGQX	END=53990472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	53990473	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr1	53990474	.	G	.	.	LowGQX	END=53990513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	53990514	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:9:60
chr1	53990515	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	53990516	.	T	.	10.85	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:0.05:60:0
chr1	53990517	.	G	.	.	LowGQX	END=53990525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	53990526	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:6:60
chr1	53990527	.	T	.	.	LowGQX	END=53990530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:9:60
chr1	53990531	.	G	.	.	LowGQX	END=53990539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	53990540	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	53990541	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	53990542	.	T	.	45.04	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:15.04:60:15
chr1	53990543	.	C	.	.	LowGQX	END=53990547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	53990548	.	A	.	45.04	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:15.04:60:15
chr1	53990549	.	G	.	.	LowGQX	END=53990557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	53990558	.	C	.	.	LowGQX	END=53990560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	53990561	.	C	.	.	LowGQX	END=53990562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	53995462	.	A	.	.	LowGQX	END=53995481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53995482	.	C	.	.	LowGQX	END=53995483	GT	./.
chr1	53995484	.	G	.	.	LowGQX	END=53995496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	53995497	.	G	.	.	LowGQX	END=53995512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	53995513	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	53995514	.	A	.	.	LowGQX	END=53995521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	53995522	.	T	.	.	LowGQX	END=53995524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	53995525	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	53995526	.	A	.	.	LowGQX	END=53995532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	53995533	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	53995534	.	T	.	.	LowGQX	END=53995577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	53995578	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	53995579	.	A	.	.	LowGQX	END=53995585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	53995586	.	G	.	.	LowGQX	END=53995616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	53995617	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	53995618	.	C	.	.	LowGQX	END=53995627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	54059779	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	54059780	.	C	.	.	PASS	END=54059785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	54059786	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	54059787	.	C	.	.	PASS	END=54059797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	54059798	.	T	.	.	PASS	END=54059811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	54059812	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:42:60
chr1	54059813	.	C	.	.	PASS	END=54059821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	54059822	.	G	.	.	PASS	END=54059855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	54059856	.	G	.	.	PASS	END=54059865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	54059866	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:69:60
chr1	54059867	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:93:60
chr1	54059868	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:54:60
chr1	54059869	.	C	.	.	PASS	END=54059910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	54059911	.	T	.	.	PASS	END=54059963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	54059964	.	T	.	.	PASS	END=54059979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	54059980	.	C	.	.	PASS	END=54060003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	54060004	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:24:60
chr1	54060005	.	C	.	.	PASS	END=54060015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	54060016	.	G	C	243.70	PASS	BaseQRankSum=1.051;DP=22;Dels=0.00;FS=2.318;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.263;QD=11.08;ReadPosRankSum=0.066;SB=-98.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:11,11:22:99:274,0,369:60:99:0.500
chr1	54060017	.	C	.	.	PASS	END=54060034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	54060035	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:45:60
chr1	54060036	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	54060037	.	C	.	.	PASS	END=54060041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	54060042	.	G	.	.	PASS	END=54060049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	54060050	.	C	.	.	PASS	END=54060052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	54060053	.	G	.	.	LowGQX	END=54060054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	54060055	.	G	.	.	PASS	END=54060060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	54060061	.	T	.	.	LowGQX	END=54060068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	54060069	.	G	.	.	PASS	END=54060078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	54060079	.	G	.	.	LowGQX	END=54060108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	54060109	.	A	.	.	LowGQX	END=54060123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	54060124	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	54060125	.	C	.	.	LowGQX	END=54060130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	54060131	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	54060132	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:6:60
chr1	54060133	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	54060134	.	C	.	.	LowGQX	END=54060135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	54060136	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	54060137	.	G	.	.	LowGQX	END=54060138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	54060139	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	54060140	.	T	.	.	LowGQX	END=54060148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	54060149	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	54060150	.	C	.	.	LowGQX	END=54060171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	54060172	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	54060173	.	G	.	.	LowGQX	END=54060185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	54060186	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	54060187	.	T	.	.	LowGQX	END=54060190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	54060191	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	54060192	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:60
chr1	54060193	.	T	.	.	LowGQX	END=54060195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	54060196	.	G	.	.	LowGQX	END=54060206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	54060207	.	G	.	.	LowGQX	END=54060210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	54060211	.	G	.	.	LowGQX	END=54060214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	54060215	.	G	.	.	LowGQX	END=54060221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	54060222	.	C	.	.	LowGQX	END=54060247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	54060248	.	T	.	4.57	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.01:60:0
chr1	54060249	.	C	.	.	LowGQX	END=54060277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	54060278	.	A	.	.	LowGQX	END=54060312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54060313	.	G	.	.	LowGQX	.	GT	./.
chr1	54060314	.	A	.	.	LowGQX	END=54060316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54060317	.	T	.	.	LowGQX	.	GT	./.
chr1	54060318	.	G	.	.	LowGQX	END=54060321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54060322	.	T	.	.	LowGQX	.	GT	./.
chr1	54060323	.	C	.	.	LowGQX	END=54060353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54060354	.	G	.	.	LowGQX	.	GT	./.
chr1	54060355	.	G	.	.	LowGQX	END=54060356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54060357	.	G	.	.	LowGQX	END=54060385	GT	./.
chr1	54060386	.	G	.	.	LowGQX	END=54060416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54060417	.	G	.	.	LowGQX	.	GT	./.
chr1	54060418	.	G	.	.	LowGQX	END=54060577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54233625	.	A	.	.	LowGQX	END=54233724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54238000	.	A	.	.	LowGQX	END=54238164	GT	./.
chr1	54252829	.	A	.	.	LowGQX	END=54252830	GT	./.
chr1	54252831	.	C	.	.	LowGQX	END=54252881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54252882	.	A	.	.	LowGQX	END=54252933	GT	./.
chr1	54254734	.	C	.	.	LowGQX	END=54254887	GT	./.
chr1	54258878	.	A	.	.	LowGQX	END=54258977	GT	./.
chr1	54262360	.	A	.	.	LowGQX	END=54262479	GT	./.
chr1	54262570	.	A	.	.	LowGQX	END=54262622	GT	./.
chr1	54262623	.	G	.	.	LowGQX	END=54262658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262659	.	C	.	.	LowGQX	.	GT	./.
chr1	54262660	.	A	.	.	LowGQX	END=54262663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262664	.	A	.	.	LowGQX	.	GT	./.
chr1	54262665	.	T	.	.	LowGQX	END=54262680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262681	.	A	.	.	LowGQX	END=54262683	GT	./.
chr1	54262684	.	G	.	.	LowGQX	END=54262686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262687	.	A	.	.	LowGQX	.	GT	./.
chr1	54262688	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262689	.	A	.	.	LowGQX	.	GT	./.
chr1	54262690	.	T	.	.	LowGQX	END=54262708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262709	.	A	.	.	LowGQX	.	GT	./.
chr1	54262710	.	C	.	.	LowGQX	END=54262718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262719	.	G	.	.	LowGQX	END=54262720	GT	./.
chr1	54262721	.	G	.	.	LowGQX	END=54262724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262725	.	A	.	.	LowGQX	.	GT	./.
chr1	54262726	.	T	.	.	LowGQX	END=54262738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262739	.	A	.	.	LowGQX	.	GT	./.
chr1	54262740	.	A	.	.	LowGQX	END=54262741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262742	.	A	.	.	LowGQX	.	GT	./.
chr1	54262743	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262744	.	T	.	.	LowGQX	END=54262745	GT	./.
chr1	54262746	.	A	.	.	LowGQX	END=54262747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262748	.	G	.	.	LowGQX	END=54262749	GT	./.
chr1	54262750	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262751	.	T	.	.	LowGQX	.	GT	./.
chr1	54262752	.	T	.	.	LowGQX	END=54262753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262754	.	A	.	.	LowGQX	.	GT	./.
chr1	54262755	.	C	.	.	LowGQX	END=54262756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262757	.	A	.	.	LowGQX	.	GT	./.
chr1	54262758	.	A	.	.	LowGQX	END=54262760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262761	.	G	.	.	LowGQX	.	GT	./.
chr1	54262762	.	T	.	.	LowGQX	END=54262769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262770	.	A	.	.	LowGQX	.	GT	./.
chr1	54262771	.	A	.	.	LowGQX	END=54262773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262774	.	C	.	.	LowGQX	END=54262785	GT	./.
chr1	54262786	.	G	.	.	LowGQX	END=54262787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262788	.	T	.	.	LowGQX	.	GT	./.
chr1	54262789	.	A	.	.	LowGQX	END=54262813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54262814	.	T	.	.	LowGQX	.	GT	./.
chr1	54262815	.	C	.	.	LowGQX	END=54262819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54266334	.	T	.	.	LowGQX	END=54266523	GT	./.
chr1	54269592	.	T	.	.	LowGQX	END=54269691	GT	./.
chr1	54272036	.	A	.	.	LowGQX	END=54272194	GT	./.
chr1	54273327	.	A	.	.	LowGQX	END=54273395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54273396	.	A	.	.	LowGQX	END=54273466	GT	./.
chr1	54275344	.	T	.	.	LowGQX	END=54275443	GT	./.
chr1	54284642	.	A	.	.	LowGQX	END=54284710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54284711	.	T	.	.	LowGQX	END=54284801	GT	./.
chr1	54291469	.	A	.	.	LowGQX	END=54291471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54291472	.	T	.	.	LowGQX	END=54291658	GT	./.
chr1	54293670	.	A	.	.	LowGQX	END=54293706	GT	./.
chr1	54293707	.	G	.	.	LowGQX	END=54293729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54293730	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	54293731	.	A	.	.	LowGQX	END=54293848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54298161	.	A	.	.	LowGQX	END=54298266	GT	./.
chr1	54301171	.	A	.	.	LowGQX	END=54301295	GT	./.
chr1	54303797	.	C	.	.	LowGQX	END=54303956	GT	./.
chr1	54325732	.	C	.	.	LowGQX	END=54325831	GT	./.
chr1	54331871	.	A	.	.	LowGQX	END=54332057	GT	./.
chr1	54332428	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54332429	.	A	.	.	LowGQX	.	GT	./.
chr1	54332430	.	C	.	.	LowGQX	END=54332455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54332456	.	G	.	.	LowGQX	.	GT	./.
chr1	54332457	.	A	.	.	LowGQX	END=54332533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54332534	.	A	.	.	LowGQX	END=54332599	GT	./.
chr1	54337043	.	A	.	.	LowGQX	END=54337163	GT	./.
chr1	54343982	.	A	.	.	LowGQX	END=54343989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54343990	.	T	.	.	LowGQX	.	GT	./.
chr1	54343991	.	A	.	.	LowGQX	END=54343998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54343999	.	G	.	.	LowGQX	.	GT	./.
chr1	54344000	.	G	.	.	LowGQX	END=54344006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54344007	.	G	.	.	LowGQX	.	GT	./.
chr1	54344008	.	C	.	.	LowGQX	END=54344027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54344028	.	G	.	.	LowGQX	.	GT	./.
chr1	54344029	.	T	.	.	LowGQX	END=54344065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54344066	.	T	.	.	LowGQX	END=54344081	GT	./.
chr1	54344253	.	C	.	.	LowGQX	END=54344405	GT	./.
chr1	54348784	.	A	.	.	LowGQX	END=54348888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54348889	.	T	.	.	LowGQX	.	GT	./.
chr1	54348890	.	C	.	.	LowGQX	END=54348901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54348902	.	T	.	.	LowGQX	END=54348951	GT	./.
chr1	54354569	.	A	.	.	LowGQX	END=54354668	GT	./.
chr1	54356187	.	A	.	.	LowGQX	END=54356286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54359882	.	A	.	.	PASS	END=54359896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	54359897	.	A	.	.	PASS	END=54359990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	54359991	.	A	.	.	PASS	END=54360165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	54360166	.	T	.	.	PASS	END=54360200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	54360201	.	C	.	.	PASS	END=54360222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	54370337	.	A	.	.	PASS	END=54370405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	54370406	.	G	.	.	PASS	END=54370448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	54370449	.	C	.	.	PASS	END=54370484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	54371766	.	A	.	.	PASS	END=54371794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	54371795	.	A	.	.	PASS	END=54371884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	54371885	.	C	.	.	PASS	END=54371928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	54371929	.	A	.	.	PASS	END=54371944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	54371945	.	A	.	.	PASS	END=54371969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	54375589	.	T	.	.	PASS	END=54375642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	54375643	.	C	.	.	PASS	END=54375665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	54375666	.	C	.	.	PASS	END=54375688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	54387322	.	C	.	.	LowGQX	END=54387442	GT	./.
chr1	54389485	.	A	.	.	LowGQX	END=54389638	GT	./.
chr1	54394030	.	T	.	.	LowGQX	END=54394129	GT	./.
chr1	54395691	.	A	.	.	LowGQX	END=54395860	GT	./.
chr1	54405596	.	T	.	.	LowGQX	END=54405624	GT	./.
chr1	54405625	.	A	.	.	LowGQX	END=54405630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54405631	.	T	.	.	LowGQX	.	GT	./.
chr1	54405632	.	A	.	.	LowGQX	END=54405644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54405645	.	T	.	.	LowGQX	.	GT	./.
chr1	54405646	.	A	.	.	LowGQX	END=54405647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54405648	.	T	.	.	LowGQX	.	GT	./.
chr1	54405649	.	A	.	.	LowGQX	END=54405653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54405654	.	T	.	.	LowGQX	.	GT	./.
chr1	54405655	.	T	.	.	LowGQX	END=54405664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54405665	.	T	.	.	LowGQX	.	GT	./.
chr1	54405666	.	G	.	.	LowGQX	END=54405677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54405678	.	T	.	.	LowGQX	END=54405679	GT	./.
chr1	54405680	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54405681	.	G	.	.	LowGQX	END=54405683	GT	./.
chr1	54405684	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54405685	.	T	.	.	LowGQX	END=54405686	GT	./.
chr1	54405687	.	T	.	.	LowGQX	END=54405695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54405696	.	T	.	.	LowGQX	.	GT	./.
chr1	54405697	.	G	.	.	LowGQX	END=54405702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54405703	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	54405704	.	C	.	.	LowGQX	END=54405712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54405713	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	54405714	.	T	.	.	LowGQX	END=54405720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54405721	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	54405722	.	C	.	.	LowGQX	END=54405723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54405724	.	T	.	.	LowGQX	.	GT	./.
chr1	54405725	.	C	.	.	LowGQX	END=54405731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54405732	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	54405733	.	A	.	.	LowGQX	END=54405750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54405751	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	54405752	.	T	.	.	LowGQX	END=54405757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54417671	.	C	.	.	LowGQX	END=54417799	GT	./.
chr1	54417800	.	C	.	.	LowGQX	END=54417832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417833	.	A	.	.	LowGQX	.	GT	./.
chr1	54417834	.	G	.	.	LowGQX	END=54417843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417844	.	A	.	.	LowGQX	END=54417845	GT	./.
chr1	54417846	.	C	.	.	LowGQX	END=54417850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417851	.	A	.	.	LowGQX	.	GT	./.
chr1	54417852	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417853	.	G	.	.	LowGQX	END=54417854	GT	./.
chr1	54417855	.	C	.	.	LowGQX	END=54417856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417857	.	A	.	.	LowGQX	.	GT	./.
chr1	54417858	.	C	.	.	LowGQX	END=54417860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417861	.	T	.	.	LowGQX	.	GT	./.
chr1	54417862	.	G	.	.	LowGQX	END=54417863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417864	.	A	.	.	LowGQX	.	GT	./.
chr1	54417865	.	C	.	.	LowGQX	END=54417868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417869	.	A	.	.	LowGQX	.	GT	./.
chr1	54417870	.	A	.	.	LowGQX	END=54417871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417872	.	A	.	.	LowGQX	.	GT	./.
chr1	54417873	.	G	.	.	LowGQX	END=54417876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417877	.	A	.	.	LowGQX	.	GT	./.
chr1	54417878	.	C	.	.	LowGQX	END=54417880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417881	.	A	.	.	LowGQX	END=54417882	GT	./.
chr1	54417883	.	C	.	.	LowGQX	END=54417884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417885	.	T	.	.	LowGQX	END=54417886	GT	./.
chr1	54417887	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417888	.	C	.	.	LowGQX	.	GT	./.
chr1	54417889	.	A	.	.	LowGQX	END=54417896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417897	.	A	.	.	LowGQX	.	GT	./.
chr1	54417898	.	T	.	.	LowGQX	END=54417900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417901	.	A	.	.	LowGQX	.	GT	./.
chr1	54417902	.	C	.	.	LowGQX	END=54417911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417912	.	G	.	.	LowGQX	.	GT	./.
chr1	54417913	.	A	.	.	LowGQX	END=54417914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417915	.	T	.	.	LowGQX	.	GT	./.
chr1	54417916	.	C	.	.	LowGQX	END=54417917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417918	.	T	.	.	LowGQX	.	GT	./.
chr1	54417919	.	C	.	.	LowGQX	END=54417922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417923	.	A	.	.	LowGQX	.	GT	./.
chr1	54417924	.	C	.	.	LowGQX	END=54417931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417932	.	A	.	.	LowGQX	.	GT	./.
chr1	54417933	.	A	.	.	LowGQX	END=54417934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417935	.	C	.	.	LowGQX	.	GT	./.
chr1	54417936	.	C	.	.	LowGQX	END=54417948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417949	.	G	.	.	LowGQX	.	GT	./.
chr1	54417950	.	T	.	.	LowGQX	END=54417954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417955	.	G	.	.	LowGQX	END=54417956	GT	./.
chr1	54417957	.	T	.	.	LowGQX	END=54417959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417960	.	C	.	.	LowGQX	.	GT	./.
chr1	54417961	.	A	.	.	LowGQX	END=54417963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417964	.	T	.	.	LowGQX	END=54417965	GT	./.
chr1	54417966	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417967	.	G	.	.	LowGQX	.	GT	./.
chr1	54417968	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54417969	.	C	.	.	LowGQX	.	GT	./.
chr1	54417970	.	A	.	.	LowGQX	END=54417971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54417972	.	T	.	.	LowGQX	.	GT	./.
chr1	54417973	.	G	.	.	LowGQX	END=54417980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54417981	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	54417982	.	A	.	.	LowGQX	END=54417988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	54417989	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	54417990	.	C	.	.	LowGQX	.	GT	./.
chr1	54417991	.	C	.	.	LowGQX	END=54418014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	54418015	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	54418016	.	C	.	.	LowGQX	END=54418055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	54418056	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	54418057	.	A	.	.	LowGQX	END=54418061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	54418062	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	54418063	.	C	.	.	LowGQX	END=54418079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	54418080	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	54418081	.	G	.	.	LowGQX	END=54418088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	54418089	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	54418090	.	A	.	.	LowGQX	END=54418111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54418112	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	54418113	.	T	.	.	LowGQX	END=54418122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54418123	.	T	.	.	LowGQX	.	GT	./.
chr1	54418124	.	G	.	.	LowGQX	END=54418126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54418127	.	C	.	.	LowGQX	END=54418147	GT	./.
chr1	54423820	.	A	.	.	LowGQX	END=54423955	GT	./.
chr1	54426027	.	A	.	.	LowGQX	END=54426131	GT	./.
chr1	54426132	.	T	.	.	LowGQX	END=54426140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54426141	.	T	.	.	LowGQX	.	GT	./.
chr1	54426142	.	T	.	.	LowGQX	END=54426149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54427702	.	T	.	.	LowGQX	END=54427801	GT	./.
chr1	54427967	.	A	.	.	LowGQX	END=54428084	GT	./.
chr1	54431962	.	G	.	.	LowGQX	END=54432061	GT	./.
chr1	54433336	.	A	.	.	LowGQX	END=54433495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54433496	.	A	.	.	LowGQX	.	GT	./.
chr1	54433497	.	G	.	.	LowGQX	END=54433527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54433528	.	A	.	.	LowGQX	END=54433614	GT	./.
chr1	54474653	.	A	.	.	LowGQX	END=54474805	GT	./.
chr1	54475953	.	A	.	.	LowGQX	END=54476013	GT	./.
chr1	54476014	.	G	.	.	LowGQX	END=54476047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54476048	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	54476049	.	C	.	.	LowGQX	END=54476053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54476054	.	G	.	.	LowGQX	.	GT	./.
chr1	54476055	.	G	.	.	LowGQX	END=54476059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54476060	.	G	.	.	LowGQX	.	GT	./.
chr1	54476061	.	G	.	.	LowGQX	END=54476062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54476063	.	G	.	.	LowGQX	.	GT	./.
chr1	54476064	.	G	.	.	LowGQX	END=54476068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54476069	.	T	.	.	LowGQX	.	GT	./.
chr1	54476070	.	C	.	.	LowGQX	END=54476085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54477814	.	A	.	.	LowGQX	END=54477831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54477832	.	C	.	.	LowGQX	END=54477884	GT	./.
chr1	54477885	.	G	.	.	LowGQX	END=54477955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54479907	.	A	.	.	LowGQX	END=54480039	GT	./.
chr1	54483025	.	G	.	.	LowGQX	END=54483124	GT	./.
chr1	54483697	.	C	.	.	LowGQX	END=54483856	GT	./.
chr1	54497821	.	G	.	.	LowGQX	END=54497980	GT	./.
chr1	54502272	.	A	.	.	LowGQX	END=54502393	GT	./.
chr1	54506421	.	A	.	.	LowGQX	END=54506520	GT	./.
chr1	54507388	.	A	.	.	LowGQX	END=54507487	GT	./.
chr1	54509044	.	A	.	.	LowGQX	END=54509200	GT	./.
chr1	54511316	.	G	.	.	LowGQX	END=54511461	GT	./.
chr1	54512938	.	A	.	.	LowGQX	END=54512949	GT	./.
chr1	54512950	.	T	.	.	LowGQX	END=54513046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54513047	.	T	.	.	LowGQX	END=54513097	GT	./.
chr1	54514289	.	A	.	.	LowGQX	END=54514388	GT	./.
chr1	54518671	.	A	.	.	LowGQX	END=54518863	GT	./.
chr1	54520005	.	C	.	.	LowGQX	END=54520199	GT	./.
chr1	54534427	.	A	.	.	LowGQX	END=54534572	GT	./.
chr1	54554258	.	T	.	.	LowGQX	END=54554465	GT	./.
chr1	54561956	.	A	.	.	LowGQX	END=54562148	GT	./.
chr1	54570140	.	A	.	.	LowGQX	END=54570533	GT	./.
chr1	54605180	.	A	.	.	LowGQX	END=54605789	GT	./.
chr1	54606769	.	A	.	.	LowGQX	END=54607108	GT	./.
chr1	54610137	.	A	.	.	LowGQX	END=54610488	GT	./.
chr1	54618507	.	G	.	.	LowGQX	END=54618606	GT	./.
chr1	54636763	.	C	.	.	LowGQX	END=54637144	GT	./.
chr1	54640291	.	G	.	.	LowGQX	END=54640495	GT	./.
chr1	54641263	.	A	.	.	LowGQX	END=54641362	GT	./.
chr1	54644821	.	C	.	.	LowGQX	END=54645018	GT	./.
chr1	54645019	.	C	.	.	LowGQX	END=54645025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645586	.	C	.	.	LowGQX	END=54645587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645588	.	T	.	.	LowGQX	.	GT	./.
chr1	54645589	.	G	.	.	LowGQX	END=54645598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645599	.	A	.	.	LowGQX	.	GT	./.
chr1	54645600	.	C	.	.	LowGQX	END=54645602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645603	.	G	.	.	LowGQX	.	GT	./.
chr1	54645604	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645605	.	A	.	.	LowGQX	END=54645606	GT	./.
chr1	54645607	.	A	.	.	LowGQX	END=54645609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645610	.	A	.	.	LowGQX	.	GT	./.
chr1	54645611	.	G	.	.	LowGQX	END=54645621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645622	.	A	.	.	LowGQX	.	GT	./.
chr1	54645623	.	A	.	.	LowGQX	END=54645649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645650	.	G	.	.	LowGQX	.	GT	./.
chr1	54645651	.	G	.	.	LowGQX	END=54645665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54645666	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	54645667	.	C	.	.	LowGQX	END=54645683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54645684	.	C	.	.	LowGQX	.	GT	./.
chr1	54645685	.	A	.	.	LowGQX	END=54645704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54645705	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	54645706	.	G	.	.	LowGQX	END=54645713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645714	.	T	.	.	LowGQX	.	GT	./.
chr1	54645715	.	T	.	.	LowGQX	END=54645716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645717	.	G	.	.	LowGQX	.	GT	./.
chr1	54645718	.	A	.	.	LowGQX	END=54645726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645727	.	T	.	.	LowGQX	END=54645728	GT	./.
chr1	54645729	.	G	.	.	LowGQX	END=54645735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645736	.	T	.	.	LowGQX	.	GT	./.
chr1	54645737	.	C	.	.	LowGQX	END=54645739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645740	.	T	.	.	LowGQX	.	GT	./.
chr1	54645741	.	C	.	.	LowGQX	END=54645744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645745	.	A	.	.	LowGQX	.	GT	./.
chr1	54645746	.	C	.	.	LowGQX	END=54645747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645748	.	A	.	.	LowGQX	.	GT	./.
chr1	54645749	.	A	.	.	LowGQX	END=54645763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645764	.	G	.	.	LowGQX	END=54645765	GT	./.
chr1	54645766	.	C	.	.	LowGQX	END=54645767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645768	.	A	.	.	LowGQX	.	GT	./.
chr1	54645769	.	G	.	.	LowGQX	END=54645772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645773	.	G	.	.	LowGQX	.	GT	./.
chr1	54645774	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645775	.	T	.	.	LowGQX	.	GT	./.
chr1	54645776	.	G	.	.	LowGQX	END=54645782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54645783	.	G	.	.	LowGQX	END=54645935	GT	./.
chr1	54649833	.	C	.	.	LowGQX	END=54649938	GT	./.
chr1	54653319	.	A	.	.	LowGQX	END=54653418	GT	./.
chr1	54656350	.	G	.	.	LowGQX	END=54656357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54656358	.	C	.	.	LowGQX	.	GT	./.
chr1	54656359	.	A	.	.	LowGQX	END=54656361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54656362	.	A	.	.	LowGQX	.	GT	./.
chr1	54656363	.	G	.	.	LowGQX	END=54656368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54656369	.	A	.	.	LowGQX	.	GT	./.
chr1	54656370	.	A	.	.	LowGQX	END=54656374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54656375	.	C	.	.	LowGQX	.	GT	./.
chr1	54656376	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54656377	.	A	.	.	LowGQX	END=54656380	GT	./.
chr1	54656381	.	A	.	.	LowGQX	END=54656401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54656402	.	T	.	.	LowGQX	.	GT	./.
chr1	54656403	.	C	.	.	LowGQX	END=54656409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54656410	.	C	.	.	LowGQX	.	GT	./.
chr1	54656411	.	C	.	.	LowGQX	END=54656450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54656451	.	C	.	.	LowGQX	.	GT	./.
chr1	54656452	.	C	.	.	LowGQX	END=54656474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54656475	.	G	.	.	LowGQX	.	GT	./.
chr1	54656476	.	C	.	.	LowGQX	END=54656486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54656487	.	C	.	.	LowGQX	END=54656569	GT	./.
chr1	54661091	.	C	.	.	LowGQX	END=54661149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54661150	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	54661151	.	T	.	.	LowGQX	END=54661271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54661272	.	T	.	.	LowGQX	END=54661289	GT	./.
chr1	54665915	.	G	.	.	LowGQX	END=54665928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54665929	.	T	.	.	LowGQX	END=54666070	GT	./.
chr1	54666071	.	T	.	.	LowGQX	END=54666174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54666175	.	T	.	.	LowGQX	.	GT	./.
chr1	54666176	.	T	.	.	LowGQX	END=54666263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54666264	.	T	.	.	LowGQX	.	GT	./.
chr1	54670689	.	A	.	.	LowGQX	END=54670876	GT	./.
chr1	54670966	.	A	.	.	LowGQX	END=54671085	GT	./.
chr1	54675617	.	A	.	.	LowGQX	END=54675806	GT	./.
chr1	54678172	.	A	.	.	LowGQX	END=54678190	GT	./.
chr1	54678191	.	C	.	.	LowGQX	END=54678215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54678216	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	54678217	.	C	.	.	LowGQX	END=54678220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	54678221	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	54678222	.	T	.	.	LowGQX	END=54678223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	54678224	.	G	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	54678225	.	A	.	.	LowGQX	END=54678226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	54678227	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	54678228	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	54678229	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	54678230	.	G	.	.	LowGQX	END=54678241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	54678242	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	54678243	.	C	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	54678244	.	A	.	.	LowGQX	END=54678247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	54678248	.	C	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	54678249	.	G	.	.	LowGQX	END=54678250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	54678251	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	54678252	.	T	.	.	LowGQX	END=54678257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	54678258	.	C	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	54678259	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	54678260	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	54678261	.	A	.	.	LowGQX	END=54678264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	54678265	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	54678266	.	C	.	.	LowGQX	END=54678268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	54678269	.	C	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	54678270	.	G	.	.	LowGQX	END=54678271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	54678272	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	54678273	.	C	.	.	LowGQX	END=54678276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	54678277	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	54678278	.	A	.	.	LowGQX	END=54678286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	54678287	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	54678288	.	T	.	.	LowGQX	END=54678290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	54678291	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	54678292	.	T	.	.	LowGQX	END=54678312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	54678313	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	54678314	.	G	.	.	LowGQX	END=54678315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	54678316	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	54678317	.	C	.	.	LowGQX	END=54678329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	54678330	.	G	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	54678331	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	54678332	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	54678333	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54681812	.	A	.	.	LowGQX	END=54682019	GT	./.
chr1	54683834	.	G	.	.	LowGQX	END=54683933	GT	./.
chr1	54686283	.	G	.	.	LowGQX	END=54686529	GT	./.
chr1	54692709	.	C	.	.	LowGQX	END=54692868	GT	./.
chr1	54693926	.	A	.	.	LowGQX	END=54694031	GT	./.
chr1	54694087	.	T	.	.	LowGQX	END=54694186	GT	./.
chr1	54694411	.	G	.	.	LowGQX	END=54694510	GT	./.
chr1	54703739	.	G	.	.	LowGQX	END=54703860	GT	./.
chr1	54703861	.	G	.	.	LowGQX	END=54704010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54704011	.	T	.	.	LowGQX	END=54704042	GT	./.
chr1	54704754	.	T	.	.	LowGQX	END=54704809	GT	./.
chr1	54704810	.	G	.	.	LowGQX	END=54704839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54704840	.	T	.	.	LowGQX	.	GT	./.
chr1	54704841	.	T	.	.	LowGQX	END=54704874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54706496	.	A	.	.	LowGQX	END=54706559	GT	./.
chr1	54706560	.	C	.	.	LowGQX	END=54706563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54706564	.	T	.	.	LowGQX	.	GT	./.
chr1	54706565	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54706566	.	A	.	.	LowGQX	.	GT	./.
chr1	54706567	.	A	.	.	LowGQX	END=54706586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54706587	.	T	.	.	LowGQX	.	GT	./.
chr1	54706588	.	G	.	.	LowGQX	END=54706597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54706598	.	G	.	.	LowGQX	.	GT	./.
chr1	54706599	.	G	.	.	LowGQX	END=54706605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54706606	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	54706607	.	G	.	.	LowGQX	.	GT	./.
chr1	54706608	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54706609	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	54706610	.	G	.	.	LowGQX	END=54706616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54706617	.	C	.	.	LowGQX	.	GT	./.
chr1	54706618	.	A	.	.	LowGQX	END=54706623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54706624	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	54706625	.	G	.	.	LowGQX	END=54706632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54706633	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	54706634	.	T	.	.	LowGQX	END=54706636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54706637	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	54706638	.	G	.	.	LowGQX	END=54706641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54706642	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	54706643	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54706644	.	A	.	.	LowGQX	.	GT	./.
chr1	54706645	.	C	.	.	LowGQX	END=54706655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	54707115	.	A	.	.	LowGQX	END=54707214	GT	./.
chr1	54707812	.	C	.	.	LowGQX	END=54707911	GT	./.
chr1	54708891	.	G	.	.	LowGQX	END=54708911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54708912	.	T	.	.	LowGQX	.	GT	./.
chr1	54708913	.	A	.	.	LowGQX	END=54708937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54708938	.	G	.	.	LowGQX	END=54708990	GT	./.
chr1	54717227	.	G	.	.	LowGQX	END=54717377	GT	./.
chr1	54717451	.	A	.	.	LowGQX	END=54717550	GT	./.
chr1	54722728	.	T	.	.	LowGQX	END=54722769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54722770	.	G	.	.	LowGQX	END=54722879	GT	./.
chr1	54723673	.	C	.	.	LowGQX	END=54723832	GT	./.
chr1	54747106	.	C	.	.	LowGQX	END=54747107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54747108	.	T	.	.	LowGQX	.	GT	./.
chr1	54747109	.	A	.	.	LowGQX	END=54747114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54747115	.	A	.	.	LowGQX	.	GT	./.
chr1	54747116	.	A	.	.	LowGQX	END=54747128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54747129	.	G	.	.	LowGQX	.	GT	./.
chr1	54747130	.	A	.	.	LowGQX	END=54747163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54747164	.	T	.	.	LowGQX	.	GT	./.
chr1	54747165	.	G	.	.	LowGQX	END=54747166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54747167	.	T	.	.	LowGQX	.	GT	./.
chr1	54747168	.	G	.	.	LowGQX	END=54747177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54747178	.	G	.	.	LowGQX	.	GT	./.
chr1	54747179	.	G	.	.	LowGQX	END=54747194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54747195	.	T	.	.	LowGQX	.	GT	./.
chr1	54747196	.	G	.	.	LowGQX	END=54747201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54747202	.	T	.	.	LowGQX	END=54747257	GT	./.
chr1	54867527	.	T	.	.	LowGQX	END=54867626	GT	./.
chr1	54870230	.	A	.	.	LowGQX	END=54870315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54870316	.	A	.	.	LowGQX	.	GT	./.
chr1	54870317	.	A	.	.	LowGQX	END=54870329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	54870518	.	G	.	.	LowGQX	END=54870617	GT	./.
chr1	54871544	.	C	.	.	LowGQX	END=54871703	GT	./.
chr1	55013890	.	C	.	.	LowGQX	END=55014049	GT	./.
chr1	55050326	.	A	.	.	LowGQX	END=55050537	GT	./.
chr1	55051493	.	T	.	.	LowGQX	END=55051592	GT	./.
chr1	55058200	.	C	.	.	LowGQX	END=55058299	GT	./.
chr1	55059612	.	A	.	.	LowGQX	END=55059654	GT	./.
chr1	55059655	.	G	.	.	LowGQX	END=55059697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55059698	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	55059699	.	G	.	.	LowGQX	END=55059714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55060227	.	A	.	.	LowGQX	END=55060278	GT	./.
chr1	55060279	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55060280	.	A	.	.	LowGQX	.	GT	./.
chr1	55060281	.	G	.	.	LowGQX	END=55060282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55060283	.	G	.	.	LowGQX	.	GT	./.
chr1	55060284	.	T	.	.	LowGQX	END=55060285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55060286	.	G	.	.	LowGQX	.	GT	./.
chr1	55060287	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55060288	.	G	.	.	LowGQX	END=55060289	GT	./.
chr1	55060290	.	C	.	.	LowGQX	END=55060292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55060293	.	A	.	.	LowGQX	.	GT	./.
chr1	55060294	.	G	.	.	LowGQX	END=55060296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55060297	.	C	.	.	LowGQX	.	GT	./.
chr1	55060298	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55060299	.	G	.	.	LowGQX	.	GT	./.
chr1	55060300	.	G	.	.	LowGQX	END=55060307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55060308	.	G	.	.	LowGQX	.	GT	./.
chr1	55060309	.	C	.	.	LowGQX	END=55060313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55060314	.	T	.	.	LowGQX	.	GT	./.
chr1	55060315	.	C	.	.	LowGQX	END=55060319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55060320	.	C	.	.	LowGQX	END=55060323	GT	./.
chr1	55060324	.	C	.	.	LowGQX	END=55060326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55060327	.	C	.	.	LowGQX	.	GT	./.
chr1	55060328	.	A	.	.	LowGQX	END=55060331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55060332	.	A	.	.	LowGQX	END=55060333	GT	./.
chr1	55060334	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55060335	.	A	.	.	LowGQX	END=55060336	GT	./.
chr1	55060337	.	C	.	.	LowGQX	END=55060348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	55060349	.	T	.	.	LowGQX	.	GT	./.
chr1	55060350	.	G	.	.	LowGQX	END=55060366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	55062900	.	C	.	.	LowGQX	END=55063024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55063025	.	A	.	.	LowGQX	END=55063092	GT	./.
chr1	55064967	.	A	.	.	LowGQX	END=55065090	GT	./.
chr1	55066940	.	A	.	.	LowGQX	END=55067088	GT	./.
chr1	55068320	.	C	.	.	LowGQX	END=55068419	GT	./.
chr1	55069528	.	C	.	.	LowGQX	END=55069615	GT	./.
chr1	55069616	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55069617	.	C	.	.	LowGQX	.	GT	./.
chr1	55069618	.	T	.	.	LowGQX	END=55069627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55070011	.	T	.	.	LowGQX	END=55070110	GT	./.
chr1	55070747	.	A	.	.	LowGQX	END=55070884	GT	./.
chr1	55072805	.	A	.	.	LowGQX	END=55072940	GT	./.
chr1	55073613	.	A	.	.	LowGQX	END=55073743	GT	./.
chr1	55074628	.	A	.	.	LowGQX	END=55074650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	55074651	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	55074652	.	C	.	.	LowGQX	END=55074656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	55074657	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	55074658	.	G	.	.	LowGQX	END=55074662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	55074663	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	55074664	.	T	.	.	LowGQX	END=55074682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55074683	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	55074684	.	G	.	.	LowGQX	END=55074689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55074690	.	G	.	.	LowGQX	.	GT	./.
chr1	55074691	.	G	.	.	LowGQX	END=55074787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55074939	.	G	.	.	LowGQX	END=55075016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55075017	.	A	.	.	LowGQX	.	GT	./.
chr1	55075018	.	C	.	.	LowGQX	END=55075066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55075067	.	A	.	.	LowGQX	.	GT	./.
chr1	55075068	.	G	.	.	LowGQX	END=55075073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55075074	.	T	.	.	LowGQX	END=55075107	GT	./.
chr1	55075108	.	A	.	.	LowGQX	END=55075129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55075130	.	T	.	.	LowGQX	.	GT	./.
chr1	55075131	.	C	.	.	LowGQX	END=55075164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55075165	.	T	.	.	LowGQX	.	GT	./.
chr1	55075166	.	C	.	.	LowGQX	END=55075258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55075259	.	C	.	.	LowGQX	END=55075369	GT	./.
chr1	55075370	.	A	.	.	LowGQX	END=55075475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	55075476	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr1	55075477	.	G	.	.	LowGQX	END=55075478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	55075479	.	C	.	.	LowGQX	END=55075480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	55075481	.	G	.	36	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.01:60:6
chr1	55075482	.	G	.	.	LowGQX	END=55075493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	55075494	.	A	.	.	LowGQX	END=55075498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	55075499	.	C	.	.	LowGQX	END=55075504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	55075505	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	55075506	.	C	.	4.69	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.01:60:0
chr1	55075507	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	55075508	.	G	.	.	LowGQX	END=55075511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	55075512	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	55075513	.	C	.	.	LowGQX	END=55075516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	55075517	.	C	.	.	LowGQX	END=55075518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	55075519	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:60
chr1	55075520	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	55075521	.	A	.	.	LowGQX	END=55075522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	55075523	.	G	.	.	LowGQX	END=55075529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	55075530	.	C	.	.	LowGQX	END=55075532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	55075533	.	C	.	.	LowGQX	END=55075534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	55075535	.	T	.	.	LowGQX	END=55075538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	55075539	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr1	55075540	.	T	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	55075541	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	55075542	.	T	.	.	LowGQX	END=55075546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	55075547	.	A	.	.	LowGQX	END=55075578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	55075579	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	55075580	.	G	.	.	LowGQX	END=55075586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	55075587	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	55075588	.	T	.	.	LowGQX	END=55075593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	55075594	.	G	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:30.11:33,0,30:60:5:0.667
chr1	55075595	.	C	.	.	LowGQX	END=55075599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	55075600	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	55075601	.	C	.	.	LowGQX	END=55075604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	55075605	.	C	.	.	LowGQX	END=55075612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	55075613	.	G	.	36	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.01:60:6
chr1	55075614	.	T	.	.	LowGQX	END=55075616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	55076083	.	A	.	.	LowGQX	END=55076230	GT	./.
chr1	55077277	.	A	.	.	LowGQX	END=55077420	GT	./.
chr1	55078157	.	A	.	.	LowGQX	END=55078385	GT	./.
chr1	55080371	.	A	.	.	LowGQX	END=55080534	GT	./.
chr1	55081661	.	G	.	.	LowGQX	END=55081847	GT	./.
chr1	55085535	.	A	.	.	LowGQX	END=55085682	GT	./.
chr1	55088949	.	A	.	.	LowGQX	END=55089070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	55096405	.	A	.	.	LowGQX	END=55096561	GT	./.
chr1	55100332	.	G	.	.	LowGQX	END=55100431	GT	./.
chr1	55118598	.	A	.	.	LowGQX	END=55119331	GT	./.
chr1	55119332	.	A	.	.	LowGQX	END=55119333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119334	.	T	.	.	LowGQX	.	GT	./.
chr1	55119335	.	G	.	.	LowGQX	END=55119343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119344	.	A	.	.	LowGQX	.	GT	./.
chr1	55119345	.	C	.	.	LowGQX	END=55119365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119366	.	C	.	.	LowGQX	.	GT	./.
chr1	55119367	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119368	.	G	.	.	LowGQX	END=55119369	GT	./.
chr1	55119370	.	G	.	.	LowGQX	END=55119384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119385	.	A	.	.	LowGQX	.	GT	./.
chr1	55119386	.	G	.	.	LowGQX	END=55119409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119410	.	A	.	.	LowGQX	.	GT	./.
chr1	55119411	.	G	.	.	LowGQX	END=55119421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119422	.	A	.	.	LowGQX	.	GT	./.
chr1	55119423	.	C	.	.	LowGQX	END=55119433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119434	.	G	.	.	LowGQX	.	GT	./.
chr1	55119435	.	C	.	.	LowGQX	END=55119445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119446	.	C	.	.	LowGQX	.	GT	./.
chr1	55119447	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119448	.	C	.	.	LowGQX	.	GT	./.
chr1	55119449	.	T	.	.	LowGQX	END=55119462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119463	.	G	.	.	LowGQX	.	GT	./.
chr1	55119464	.	A	.	.	LowGQX	END=55119468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119469	.	G	.	.	LowGQX	.	GT	./.
chr1	55119470	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119471	.	C	.	.	LowGQX	.	GT	./.
chr1	55119472	.	C	.	.	LowGQX	END=55119474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119475	.	C	.	.	LowGQX	.	GT	./.
chr1	55119476	.	A	.	.	LowGQX	END=55119478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119479	.	C	.	.	LowGQX	.	GT	./.
chr1	55119480	.	A	.	.	LowGQX	END=55119482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119483	.	C	.	.	LowGQX	END=55119487	GT	./.
chr1	55119488	.	T	.	.	LowGQX	END=55119493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119494	.	A	.	.	LowGQX	.	GT	./.
chr1	55119495	.	C	.	.	LowGQX	END=55119499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119500	.	A	.	.	LowGQX	.	GT	./.
chr1	55119501	.	T	.	.	LowGQX	END=55119502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119503	.	C	.	.	LowGQX	.	GT	./.
chr1	55119504	.	C	.	.	LowGQX	END=55119509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119510	.	C	.	.	LowGQX	.	GT	./.
chr1	55119511	.	C	.	.	LowGQX	END=55119519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119520	.	T	.	.	LowGQX	.	GT	./.
chr1	55119521	.	A	.	.	LowGQX	END=55119530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119531	.	A	.	.	LowGQX	.	GT	./.
chr1	55119532	.	C	.	.	LowGQX	END=55119533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119534	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	55119535	.	C	.	.	LowGQX	END=55119538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119539	.	A	.	.	LowGQX	.	GT	./.
chr1	55119540	.	C	.	.	LowGQX	END=55119545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119546	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	55119547	.	G	.	.	LowGQX	END=55119551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119552	.	A	.	.	LowGQX	.	GT	./.
chr1	55119553	.	C	.	.	LowGQX	END=55119567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	55119568	.	A	.	.	LowGQX	.	GT	./.
chr1	55119569	.	C	.	.	LowGQX	END=55119699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119700	.	T	.	.	LowGQX	END=55119705	GT	./.
chr1	55119706	.	C	.	.	LowGQX	END=55119708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119709	.	G	.	.	LowGQX	.	GT	./.
chr1	55119710	.	G	.	.	LowGQX	END=55119726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119727	.	T	.	.	LowGQX	.	GT	./.
chr1	55119728	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119729	.	G	.	.	LowGQX	END=55119730	GT	./.
chr1	55119731	.	A	.	.	LowGQX	END=55119736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119737	.	A	.	.	LowGQX	END=55119740	GT	./.
chr1	55119741	.	C	.	.	LowGQX	END=55119752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119753	.	T	.	.	LowGQX	.	GT	./.
chr1	55119754	.	G	.	.	LowGQX	END=55119757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119758	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	55119759	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119760	.	G	.	.	LowGQX	.	GT	./.
chr1	55119761	.	T	.	.	LowGQX	END=55119798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119799	.	G	.	.	LowGQX	.	GT	./.
chr1	55119800	.	G	.	.	LowGQX	END=55119804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119805	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	55119806	.	G	.	.	LowGQX	END=55119820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55119821	.	A	.	.	LowGQX	.	GT	./.
chr1	55119822	.	T	.	.	LowGQX	END=55119832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55124716	.	T	.	.	LowGQX	END=55124874	GT	./.
chr1	55129400	.	C	.	.	LowGQX	END=55129499	GT	./.
chr1	55130827	.	T	.	.	LowGQX	END=55130926	GT	./.
chr1	55134519	.	T	.	.	LowGQX	.	GT	./.
chr1	55134520	.	C	.	.	LowGQX	END=55134522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55134523	.	C	.	.	LowGQX	END=55134525	GT	./.
chr1	55134526	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55134527	.	G	.	.	LowGQX	END=55134529	GT	./.
chr1	55134530	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55134531	.	A	.	.	LowGQX	END=55134532	GT	./.
chr1	55134533	.	A	.	.	LowGQX	END=55134534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55134535	.	T	.	.	LowGQX	.	GT	./.
chr1	55134536	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55134537	.	T	.	.	LowGQX	.	GT	./.
chr1	55134538	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55134539	.	A	.	.	LowGQX	.	GT	./.
chr1	55134540	.	C	.	.	LowGQX	END=55134541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55134542	.	A	.	.	LowGQX	.	GT	./.
chr1	55134543	.	C	.	.	LowGQX	END=55134544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55134545	.	C	.	.	LowGQX	END=55134547	GT	./.
chr1	55134548	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55134549	.	A	.	.	LowGQX	END=55134550	GT	./.
chr1	55134551	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55134552	.	A	.	.	LowGQX	.	GT	./.
chr1	55134553	.	G	.	.	LowGQX	END=55134557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55134558	.	A	.	.	LowGQX	END=55134559	GT	./.
chr1	55134560	.	G	.	.	LowGQX	END=55134561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55134562	.	T	.	.	LowGQX	END=55134563	GT	./.
chr1	55134564	.	T	.	.	LowGQX	END=55134569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55134570	.	A	.	.	LowGQX	.	GT	./.
chr1	55134571	.	G	.	.	LowGQX	END=55134578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55134579	.	G	.	.	LowGQX	END=55134581	GT	./.
chr1	55134582	.	A	.	.	LowGQX	END=55134585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55134586	.	G	.	.	LowGQX	.	GT	./.
chr1	55134587	.	A	.	.	LowGQX	END=55134588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55134589	.	G	.	.	LowGQX	.	GT	./.
chr1	55134590	.	A	.	.	LowGQX	END=55134595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55134596	.	A	.	.	LowGQX	.	GT	./.
chr1	55134597	.	T	.	.	LowGQX	END=55134618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55136160	.	C	.	.	LowGQX	END=55136259	GT	./.
chr1	55136471	.	A	.	.	LowGQX	END=55136558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55136559	.	A	.	.	LowGQX	END=55136580	GT	./.
chr1	55136581	.	G	.	.	LowGQX	END=55136604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	55138762	.	A	.	.	LowGQX	END=55138861	GT	./.
chr1	55139372	.	A	.	.	LowGQX	END=55139374	GT	./.
chr1	55139375	.	C	.	.	LowGQX	END=55139386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55139387	.	G	.	.	LowGQX	.	GT	./.
chr1	55139388	.	G	.	.	LowGQX	END=55139391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55139392	.	A	.	.	LowGQX	END=55139393	GT	./.
chr1	55139394	.	C	.	.	LowGQX	END=55139395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55139396	.	C	.	.	LowGQX	.	GT	./.
chr1	55139397	.	T	.	.	LowGQX	END=55139405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55139406	.	C	.	.	LowGQX	.	GT	./.
chr1	55139407	.	C	.	.	LowGQX	END=55139410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55139411	.	A	.	.	LowGQX	.	GT	./.
chr1	55139412	.	G	.	.	LowGQX	END=55139413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55139414	.	G	.	.	LowGQX	END=55139415	GT	./.
chr1	55139416	.	G	.	.	LowGQX	END=55139417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55139418	.	A	.	.	LowGQX	.	GT	./.
chr1	55139419	.	C	.	.	LowGQX	END=55139422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55139423	.	C	.	.	LowGQX	.	GT	./.
chr1	55139424	.	T	.	.	LowGQX	END=55139427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55139428	.	A	.	.	LowGQX	END=55139429	GT	./.
chr1	55139430	.	C	.	.	LowGQX	END=55139480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55139672	.	G	.	.	LowGQX	END=55139673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55139674	.	T	.	.	LowGQX	.	GT	./.
chr1	55139675	.	T	.	.	LowGQX	END=55139687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55139688	.	G	.	.	LowGQX	.	GT	./.
chr1	55139689	.	A	.	.	LowGQX	END=55139725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55139726	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	55139727	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55139728	.	A	.	.	LowGQX	END=55139826	GT	./.
chr1	55144413	.	A	.	.	LowGQX	END=55144529	GT	./.
chr1	55144884	.	C	.	.	LowGQX	END=55144904	GT	./.
chr1	55144905	.	G	.	.	LowGQX	END=55145114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55145562	.	A	.	.	LowGQX	END=55145720	GT	./.
chr1	55148327	.	A	.	.	LowGQX	END=55148410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55148411	.	A	.	.	LowGQX	END=55148469	GT	./.
chr1	55151929	.	A	.	.	LowGQX	END=55152123	GT	./.
chr1	55158095	.	A	.	.	LowGQX	END=55158236	GT	./.
chr1	55161047	.	A	.	.	LowGQX	END=55161283	GT	./.
chr1	55163295	.	C	.	.	LowGQX	END=55163394	GT	./.
chr1	55165741	.	G	.	.	LowGQX	END=55165749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55165750	.	A	.	.	LowGQX	END=55166136	GT	./.
chr1	55166794	.	C	.	.	LowGQX	END=55166947	GT	./.
chr1	55166948	.	G	.	.	LowGQX	END=55166983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55166984	.	C	.	.	LowGQX	.	GT	./.
chr1	55166985	.	A	.	.	LowGQX	END=55166993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55166994	.	A	.	.	LowGQX	.	GT	./.
chr1	55166995	.	C	.	.	LowGQX	END=55166997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55167761	.	A	.	.	LowGQX	END=55167772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55167773	.	T	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	55167774	.	C	.	.	LowGQX	END=55167791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55167792	.	C	.	.	LowGQX	END=55167920	GT	./.
chr1	55168294	.	A	.	.	LowGQX	END=55168420	GT	./.
chr1	55172106	.	A	.	.	LowGQX	END=55172212	GT	./.
chr1	55174669	.	T	.	.	LowGQX	END=55174672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55174673	.	G	.	.	LowGQX	.	GT	./.
chr1	55174674	.	G	.	.	LowGQX	END=55174686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55174687	.	G	.	.	LowGQX	END=55174768	GT	./.
chr1	55175617	.	A	.	.	LowGQX	END=55175619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55175620	.	T	.	.	LowGQX	END=55175621	GT	./.
chr1	55175622	.	T	.	.	LowGQX	END=55175648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55175649	.	C	.	.	LowGQX	.	GT	./.
chr1	55175650	.	A	.	.	LowGQX	END=55175657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55175658	.	G	.	.	LowGQX	END=55175862	GT	./.
chr1	55181190	.	C	.	.	LowGQX	END=55181289	GT	./.
chr1	55181580	.	C	.	.	LowGQX	END=55181816	GT	./.
chr1	55182271	.	A	.	.	LowGQX	END=55182299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55182300	.	T	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	55182301	.	C	.	.	LowGQX	END=55182392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55183163	.	A	.	.	LowGQX	END=55183328	GT	./.
chr1	55186825	.	T	.	.	LowGQX	END=55186924	GT	./.
chr1	55188346	.	A	.	.	LowGQX	END=55188394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55188395	.	T	.	.	LowGQX	END=55188474	GT	./.
chr1	55194013	.	T	.	.	LowGQX	END=55194112	GT	./.
chr1	55197157	.	A	.	.	LowGQX	END=55197274	GT	./.
chr1	55197275	.	G	.	.	LowGQX	END=55197327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55197328	.	A	.	.	LowGQX	.	GT	./.
chr1	55197329	.	G	.	.	LowGQX	END=55197348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55197349	.	T	.	.	LowGQX	.	GT	./.
chr1	55197350	.	C	.	.	LowGQX	END=55197354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55197355	.	C	.	.	LowGQX	.	GT	./.
chr1	55197356	.	T	.	.	LowGQX	END=55197375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55199293	.	T	.	.	LowGQX	END=55199392	GT	./.
chr1	55203247	.	T	.	.	LowGQX	END=55203346	GT	./.
chr1	55207032	.	G	.	.	LowGQX	END=55207188	GT	./.
chr1	55223405	.	A	.	.	LowGQX	END=55224553	GT	./.
chr1	55224554	.	G	.	.	LowGQX	END=55224836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55246904	.	G	.	.	LowGQX	END=55247434	GT	./.
chr1	55247435	.	G	.	.	LowGQX	END=55247452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55247997	.	C	.	.	LowGQX	END=55248150	GT	./.
chr1	55250403	.	G	.	.	LowGQX	END=55250549	GT	./.
chr1	55251167	.	G	.	.	LowGQX	END=55251317	GT	./.
chr1	55251654	.	A	.	.	LowGQX	END=55251819	GT	./.
chr1	55252628	.	A	.	.	LowGQX	END=55252750	GT	./.
chr1	55253341	.	A	.	.	LowGQX	END=55253361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55253362	.	C	.	.	LowGQX	END=55253501	GT	./.
chr1	55253693	.	C	.	.	LowGQX	END=55253792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55266268	.	A	.	.	LowGQX	END=55266847	GT	./.
chr1	55271737	.	C	.	.	LowGQX	END=55271773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55271774	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	55271775	.	G	.	.	LowGQX	END=55271779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55271780	.	C	.	.	LowGQX	.	GT	./.
chr1	55271781	.	A	.	.	LowGQX	END=55271813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55271814	.	G	.	.	LowGQX	.	GT	./.
chr1	55271815	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55271816	.	A	.	.	LowGQX	.	GT	./.
chr1	55271817	.	G	.	.	LowGQX	END=55271818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55271819	.	T	.	.	LowGQX	END=55271947	GT	./.
chr1	55272663	.	C	.	.	LowGQX	END=55272751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	55272752	.	A	.	.	LowGQX	END=55272762	GT	./.
chr1	55273197	.	A	.	.	LowGQX	END=55273210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55273211	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	55273212	.	C	.	.	LowGQX	END=55273268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55273269	.	T	.	.	LowGQX	END=55273365	GT	./.
chr1	55273560	.	A	.	.	LowGQX	END=55273686	GT	./.
chr1	55277465	.	A	.	.	LowGQX	END=55277606	GT	./.
chr1	55277717	.	A	.	.	LowGQX	END=55277864	GT	./.
chr1	55279485	.	A	.	.	LowGQX	END=55279650	GT	./.
chr1	55280585	.	A	.	.	LowGQX	END=55280714	GT	./.
chr1	55282660	.	A	.	.	LowGQX	END=55282797	GT	./.
chr1	55307270	.	G	.	.	LowGQX	END=55307369	GT	./.
chr1	55307460	.	C	.	.	LowGQX	END=55307461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55307462	.	G	.	.	LowGQX	.	GT	./.
chr1	55307463	.	T	.	.	LowGQX	END=55307475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55307476	.	A	.	.	LowGQX	.	GT	./.
chr1	55307477	.	A	.	.	LowGQX	END=55307481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55307482	.	T	.	.	LowGQX	.	GT	./.
chr1	55307483	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55307484	.	A	.	.	LowGQX	.	GT	./.
chr1	55307485	.	C	.	.	LowGQX	END=55307489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55307490	.	T	.	.	LowGQX	.	GT	./.
chr1	55307491	.	T	.	.	LowGQX	END=55307501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55307502	.	A	.	.	LowGQX	.	GT	./.
chr1	55307503	.	A	.	.	LowGQX	END=55307505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55307506	.	G	.	.	LowGQX	.	GT	./.
chr1	55307507	.	C	.	.	LowGQX	END=55307509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55307510	.	T	.	.	LowGQX	.	GT	./.
chr1	55307511	.	C	.	.	LowGQX	END=55307516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55307517	.	G	.	.	LowGQX	.	GT	./.
chr1	55307518	.	T	.	.	LowGQX	END=55307520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55307521	.	A	.	.	LowGQX	END=55307522	GT	./.
chr1	55307523	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55307524	.	A	.	.	LowGQX	.	GT	./.
chr1	55307525	.	C	.	.	LowGQX	END=55307528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55307529	.	T	.	.	LowGQX	.	GT	./.
chr1	55307530	.	C	.	.	LowGQX	END=55307543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55307544	.	T	.	.	LowGQX	.	GT	./.
chr1	55307545	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55307546	.	A	.	.	LowGQX	.	GT	./.
chr1	55307547	.	A	.	.	LowGQX	END=55307553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55307554	.	T	.	.	LowGQX	END=55307559	GT	./.
chr1	55317855	.	G	.	.	PASS	END=55317860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	55317861	.	T	.	.	PASS	END=55317866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	55317867	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:60:60
chr1	55317868	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:99:60
chr1	55317869	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:60:60
chr1	55317870	.	A	.	.	PASS	END=55317887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	55317888	.	C	.	.	PASS	END=55317911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	55317912	.	C	.	.	PASS	END=55317951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	55317952	.	G	.	.	PASS	END=55318017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	55318018	.	T	.	.	PASS	END=55318049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	55318050	.	C	.	.	PASS	END=55318081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	55318082	.	G	.	.	PASS	END=55318091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	55318092	.	G	.	.	PASS	END=55318098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	55318099	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:45:60
chr1	55318100	.	A	.	.	PASS	END=55318110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	55319056	.	T	.	.	PASS	END=55319079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	55319080	.	C	.	.	PASS	END=55319084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	55319085	.	T	.	.	PASS	END=55319089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	55319090	.	T	.	.	PASS	END=55319105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	55319106	.	C	.	.	PASS	END=55319141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	55319142	.	C	.	.	PASS	END=55319188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	55319189	.	C	.	.	PASS	END=55319240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	55319241	.	T	.	.	PASS	END=55319286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	55319287	.	T	.	.	PASS	END=55319296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	55319297	.	A	.	.	PASS	END=55319320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	55319321	.	T	.	.	PASS	END=55319336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	55319659	.	G	.	.	PASS	END=55319688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	55319689	.	T	.	.	PASS	END=55319762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	55319763	.	C	.	.	PASS	END=55319858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	55319859	.	A	.	.	PASS	END=55319901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	55319902	.	A	G	4773.29	PASS	DP=162;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=17.1393;MQ=60;MQ0=0;QD=29.46;SB=-2154.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,160:162:99:4773,370,0:60:99:1.000
chr1	55319903	.	A	.	.	PASS	END=55319939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	55319940	.	A	.	.	PASS	END=55319958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	55330925	.	C	.	.	PASS	END=55330932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	55330933	.	A	.	.	PASS	END=55330936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	55330937	.	G	.	.	PASS	END=55330946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	55330947	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:57:60
chr1	55330948	.	G	.	.	PASS	END=55330962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	55330963	.	A	.	.	PASS	END=55330965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	55330966	.	T	C	1301.36	PASS	DP=42;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=1.8938;MQ=60;MQ0=0;QD=30.98;SB=-380.41	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,42:42:99:1334,102,0:60:99:1.000
chr1	55330967	.	A	.	.	PASS	END=55330992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	55330993	.	T	.	.	PASS	END=55331023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	55331024	.	C	.	.	PASS	END=55331123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	55331124	.	A	.	.	PASS	END=55331156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	55331157	.	A	.	.	PASS	END=55331162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	55331163	.	C	.	.	PASS	END=55331164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:75:60
chr1	55331165	.	A	.	.	PASS	END=55331169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	55331170	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:60:60
chr1	55336972	.	A	.	.	PASS	END=55336973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	55336974	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:51:60
chr1	55336975	.	C	.	.	PASS	END=55336985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	55336986	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:45:60
chr1	55336987	.	C	.	.	PASS	END=55337008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	55337009	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:60:60
chr1	55337010	.	C	.	.	PASS	END=55337017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	55337018	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:57:60
chr1	55337019	.	T	.	.	PASS	END=55337033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	55337034	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:72:60
chr1	55337035	.	T	.	.	PASS	END=55337056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	55337057	.	G	.	.	PASS	END=55337078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	55337079	.	G	.	.	PASS	END=55337111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	55337112	.	C	.	.	PASS	END=55337146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	55337147	.	A	.	.	PASS	END=55337215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	55337216	.	T	.	.	PASS	END=55337256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	55337257	.	T	.	.	PASS	END=55337269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	55337270	.	A	.	.	PASS	END=55337301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	55337302	.	G	.	.	PASS	END=55337313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	55337314	.	G	.	.	PASS	END=55337315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	55337316	.	T	.	.	PASS	END=55337337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	55340715	.	C	.	.	PASS	END=55340747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:84:60
chr1	55340748	.	T	.	.	PASS	END=55340774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:97:60
chr1	55340775	.	T	.	.	PASS	END=55340846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	55340847	.	G	.	.	PASS	END=55340876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	55340877	.	C	.	.	PASS	END=55340893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr1	55340894	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:43:60
chr1	55340895	.	A	.	.	PASS	END=55340903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	55340904	.	A	.	.	PASS	END=55340910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	55340911	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:39:60
chr1	55340912	.	C	.	.	PASS	END=55340920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	55340921	.	C	.	.	PASS	END=55340926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	55340927	.	G	.	.	PASS	END=55340932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	55340933	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	55340934	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:51:60
chr1	55340935	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	55341564	.	C	.	.	PASS	END=55341606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	55341607	.	G	.	.	PASS	END=55341690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	55341691	.	C	.	.	PASS	END=55341718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	55341719	.	A	.	.	PASS	END=55341757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	55341758	.	G	.	.	PASS	END=55341771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	55349240	.	C	.	.	PASS	END=55349260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	55349261	.	T	.	.	PASS	END=55349305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	55349306	.	C	.	.	PASS	END=55349377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	55349378	.	G	.	.	PASS	END=55349397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	55349398	.	G	.	.	PASS	END=55349423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	55349424	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:64:99:60
chr1	55349425	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:57:60
chr1	55349426	.	C	.	.	PASS	END=55349454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:79:60
chr1	55349455	.	A	.	.	PASS	END=55349461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	55349462	.	A	.	.	PASS	END=55349467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	55349468	.	T	.	.	PASS	END=55349471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	55349472	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:33:60
chr1	55349473	.	T	.	.	PASS	END=55349497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	55352235	.	C	.	.	LowGQX	END=55352306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55352307	.	T	.	.	LowGQX	.	GT	./.
chr1	55352308	.	C	.	.	LowGQX	END=55352311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55352312	.	C	.	.	LowGQX	.	GT	./.
chr1	55352313	.	T	.	.	LowGQX	END=55352314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55352315	.	T	.	.	LowGQX	END=55352317	GT	./.
chr1	55352318	.	C	.	.	LowGQX	END=55352322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55352323	.	C	.	.	LowGQX	.	GT	./.
chr1	55352324	.	T	.	.	LowGQX	END=55352328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55352329	.	C	.	.	LowGQX	END=55352330	GT	./.
chr1	55352331	.	C	.	.	LowGQX	END=55352336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	55352337	.	A	.	.	LowGQX	.	GT	./.
chr1	55352338	.	G	.	.	LowGQX	END=55352350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	55352351	.	G	.	.	LowGQX	END=55352357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	55352358	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	55352359	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	55352360	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	55352361	.	C	.	.	LowGQX	END=55352362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:63
chr1	55352363	.	G	.	.	LowGQX	END=55352368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:62
chr1	55352369	.	A	.	.	LowGQX	END=55352382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:62
chr1	55352383	.	G	.	.	LowGQX	END=55352385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:62
chr1	55352386	.	C	.	.	LowGQX	END=55352387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:64
chr1	55352388	.	C	.	.	LowGQX	END=55352389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:64
chr1	55352390	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:64
chr1	55352391	.	G	.	2.30	LowGQX	DP=3;MQ=64;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0:64:0
chr1	55352392	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:64
chr1	55352393	.	C	.	.	LowGQX	.	GT	./.
chr1	55352394	.	C	.	.	LowGQX	END=55352395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:64
chr1	55352396	.	C	.	.	LowGQX	END=55352398	GT	./.
chr1	55352511	.	C	.	.	PASS	END=55352516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	55352517	.	C	.	.	PASS	END=55352534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	55352535	.	G	.	.	PASS	END=55352546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	55352547	.	C	.	.	PASS	END=55352556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	55352557	.	C	.	.	PASS	END=55352559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	55352560	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:42:60
chr1	55352561	.	C	.	.	PASS	END=55352587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	55352588	.	G	.	.	PASS	END=55352632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:91:60
chr1	55352633	.	C	.	.	PASS	END=55352646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	55352647	.	T	.	.	PASS	END=55352747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:90:60
chr1	55352748	.	C	.	.	PASS	END=55352776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	55352777	.	A	.	.	PASS	END=55352792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	55352793	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:75:60
chr1	55352794	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:99:60
chr1	55352795	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:72:60
chr1	55352796	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:96:60
chr1	55352797	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:48:60
chr1	55352798	.	G	.	.	PASS	END=55352799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	55352800	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:45:60
chr1	55352801	.	G	.	.	PASS	END=55352822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	55352823	.	T	.	.	PASS	END=55352824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:60
chr1	55352825	.	C	.	.	PASS	END=55352839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	55352840	.	T	.	.	PASS	END=55352843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	55446697	.	G	.	.	LowGQX	END=55446796	GT	./.
chr1	55451768	.	A	.	.	LowGQX	END=55452121	GT	./.
chr1	55457507	.	A	.	.	LowGQX	END=55457583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	55457584	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	55457585	.	C	.	.	LowGQX	END=55457614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55457615	.	C	.	.	LowGQX	END=55457748	GT	./.
chr1	55457749	.	G	.	.	LowGQX	END=55457755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55457756	.	A	.	.	LowGQX	.	GT	./.
chr1	55457757	.	C	.	.	LowGQX	END=55457778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55464809	.	C	.	.	PASS	END=55464822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	55464823	.	C	.	.	PASS	END=55464836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	55464837	.	G	.	.	PASS	END=55464887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	55464888	.	G	.	.	PASS	END=55464952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	55464953	.	C	.	.	PASS	END=55464977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	55464978	.	T	.	.	PASS	END=55464992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	55464993	.	T	.	.	PASS	END=55465015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	55465016	.	A	.	.	PASS	END=55465021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	55465022	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:36:60
chr1	55465023	.	A	.	.	PASS	END=55465035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	55465036	.	G	.	.	PASS	END=55465038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:93:60
chr1	55465039	.	A	.	.	PASS	END=55465041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	55465042	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:51:60
chr1	55465043	.	G	.	.	PASS	END=55465044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	55465045	.	T	.	.	PASS	END=55465046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr1	55465047	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:84:60
chr1	55465048	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:45:60
chr1	55465049	.	G	.	.	PASS	END=55465052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	55465053	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:60:60
chr1	55465054	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:36:60
chr1	55465055	.	G	.	.	PASS	END=55465057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	55465058	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:33:60
chr1	55465059	.	G	.	.	PASS	END=55465067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	55465068	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:33:60
chr1	55465069	.	C	.	.	PASS	END=55465071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	55465072	.	C	.	.	PASS	END=55465078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	55465079	.	C	.	.	PASS	END=55465087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	55470644	.	G	.	.	PASS	END=55470646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	55470647	.	C	.	.	PASS	END=55470664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	55470665	.	G	.	.	PASS	END=55470699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	55470700	.	C	.	.	PASS	END=55470796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	55470797	.	C	.	.	PASS	END=55470815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	55470816	.	G	.	.	PASS	END=55470840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	55472619	.	G	.	.	PASS	END=55472629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	55472630	.	G	.	.	PASS	END=55472653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	55472654	.	C	.	.	PASS	END=55472663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	55472664	.	C	.	.	PASS	END=55472669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	55472670	.	C	.	.	PASS	END=55472675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	55472676	.	T	.	.	PASS	END=55472684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	55472685	.	G	.	.	PASS	END=55472689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	55472690	.	A	.	.	PASS	END=55472728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:94:60
chr1	55472729	.	T	.	.	PASS	END=55472762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	55472763	.	G	.	.	PASS	END=55472837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	55472838	.	A	.	.	PASS	END=55472870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	55472871	.	G	.	.	PASS	END=55472904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	55472905	.	G	.	.	PASS	END=55472917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	55472918	.	A	.	.	PASS	END=55472922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	55472923	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:21:60
chr1	55472924	.	G	.	.	PASS	END=55472932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	55472933	.	A	.	.	PASS	END=55472937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	55472938	.	T	.	.	PASS	END=55472942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	55472943	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:39:60
chr1	55472944	.	G	.	.	PASS	END=55472946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	55472947	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:60
chr1	55472948	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:45:60
chr1	55472949	.	A	.	.	PASS	END=55472959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	55472960	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	55472961	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	55472962	.	C	.	.	LowGQX	END=55472973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	55472974	.	T	.	.	LowGQX	END=55472975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	55472976	.	C	.	.	LowGQX	END=55472983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	55472984	.	T	.	.	LowGQX	END=55472989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	55472990	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	55472991	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	55472992	.	T	.	.	LowGQX	END=55472996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	55473836	.	A	.	.	PASS	END=55473845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	55473846	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr1	55473847	.	C	.	.	PASS	END=55473870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	55473871	.	G	.	.	PASS	END=55473887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	55473888	.	C	.	.	PASS	END=55473907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	55473908	.	C	.	.	PASS	END=55473937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	55473938	.	C	.	.	PASS	END=55473966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	55473967	.	G	.	.	PASS	END=55473987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	55473988	.	A	.	.	PASS	END=55474019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	55474020	.	C	.	.	PASS	END=55474125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr1	55474126	.	T	.	.	PASS	END=55474156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	55474157	.	A	.	.	PASS	END=55474177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	55474178	.	T	.	.	PASS	END=55474197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	55474198	.	A	.	.	PASS	END=55474228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	55474229	.	T	.	.	PASS	END=55474238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	55474239	.	G	.	.	PASS	END=55474261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	55474262	.	G	A	1731.28	SB	BaseQRankSum=-0.801;DP=51;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.7343;MQ=60;MQ0=0;MQRankSum=1.383;QD=33.95;ReadPosRankSum=-0.752;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,49:51:71.85:1764,72,0:60:72:0.961
chr1	55474263	.	G	.	.	PASS	END=55474298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	55474299	.	T	.	.	PASS	END=55474324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	55474325	.	A	C	885.47	SB	BaseQRankSum=-1.733;DP=32;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=-0.462;QD=27.67;ReadPosRankSum=-0.347;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,29:32:38.93:918,39,0:60:39:0.967
chr1	55474326	.	G	.	.	PASS	END=55474337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	55474338	.	T	.	.	PASS	END=55474351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	55474352	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:57:60
chr1	55505460	.	G	.	.	PASS	END=55505464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	55505465	.	G	.	.	PASS	END=55505479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	55505480	.	C	.	.	PASS	END=55505504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	55505505	.	G	.	.	PASS	END=55505523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	55505524	.	G	.	.	PASS	END=55505548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	55505549	.	G	.	.	PASS	END=55505597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	55505598	.	G	.	.	PASS	END=55505659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	55505660	.	C	.	.	PASS	END=55505694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	55505695	.	C	.	.	PASS	END=55505720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	55505721	.	C	.	.	PASS	END=55505731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	55505732	.	A	G	2190.79	PASS	DP=67;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=7.5754;MQ=60;MQ0=0;QD=32.70;SB=-419.73	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,67:67:99:2224,178,0:60:99:1.000
chr1	55505733	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:60:60
chr1	55505734	.	G	.	.	PASS	END=55505768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	55509465	.	G	.	.	PASS	END=55509492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	55509493	.	T	.	.	PASS	END=55509496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr1	55509497	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:71:60
chr1	55509498	.	C	.	.	PASS	END=55509518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	55509519	.	C	.	.	PASS	END=55509538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	55509539	.	C	.	.	PASS	END=55509579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	55509580	.	C	.	.	PASS	END=55509615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	55509616	.	C	.	.	PASS	END=55509638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	55509639	.	A	.	.	PASS	END=55509705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	55509706	.	T	.	.	PASS	END=55509748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	55509749	.	G	.	.	PASS	END=55509758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	55512145	.	T	.	.	PASS	END=55512161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	55512162	.	A	.	.	PASS	END=55512185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	55512186	.	G	.	.	PASS	END=55512205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	55512206	.	T	.	.	PASS	END=55512235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	55512236	.	C	.	.	PASS	END=55512289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	55512290	.	G	.	.	PASS	END=55512318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	55512319	.	G	.	.	PASS	END=55512330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	55512331	.	A	.	.	PASS	END=55512344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	55512345	.	C	.	.	PASS	END=55512354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	55512355	.	T	.	.	PASS	END=55512369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	55512370	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:72:60
chr1	55516802	.	G	.	.	LowGQX	END=55516839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	55516840	.	T	.	.	LowGQX	END=55516961	GT	./.
chr1	55517900	.	G	.	.	PASS	END=55517917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	55517918	.	T	.	.	PASS	END=55517964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	55517965	.	G	.	.	PASS	END=55517984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	55517985	.	C	.	.	PASS	END=55518001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	55518002	.	A	.	.	PASS	END=55518116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	55518117	.	C	.	.	PASS	END=55518135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	55518272	.	A	.	.	PASS	END=55518295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	55518296	.	C	.	.	PASS	END=55518315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	55518316	.	C	T	1276.47	PASS	BaseQRankSum=-0.882;DP=126;Dels=0.00;FS=0.748;HRun=1;HaplotypeScore=21.7791;MQ=60;MQ0=0;MQRankSum=0.709;QD=10.13;ReadPosRankSum=-1.312;SB=-519.73	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:65,60:126:99:1306,0,1640:60:99:0.480
chr1	55518317	.	G	.	.	PASS	END=55518391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	55518392	.	A	.	.	PASS	END=55518442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	55518443	.	A	.	.	PASS	END=55518465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	55518466	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:89:99:60
chr1	55518467	.	A	G	1067.34	PASS	BaseQRankSum=-1.180;DP=87;Dels=0.00;FS=3.549;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=0.873;QD=12.27;ReadPosRankSum=1.265;SB=-426.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:40,47:87:99:1097,0,1033:60:99:0.540
chr1	55518468	.	A	.	.	PASS	END=55518500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	55518501	.	T	.	.	PASS	END=55518515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	55521615	.	G	.	.	PASS	END=55521637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	55521638	.	G	.	.	PASS	END=55521674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	55521675	.	T	.	.	PASS	END=55521708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:91:60
chr1	55521709	.	G	.	.	PASS	END=55521783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	55521784	.	G	.	.	PASS	END=55521843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	55521844	.	C	.	.	PASS	END=55521862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	55521863	.	G	.	.	PASS	END=55521869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	55521870	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:52:60
chr1	55521871	.	T	.	.	PASS	END=55521884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	55521885	.	C	.	.	PASS	END=55521894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	55521895	.	G	.	.	PASS	END=55521899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	55521899	.	GGGGCGGA	G	762.15	LowGQ;LowGQX	DP=24;FS=0.000;HRun=0;HaplotypeScore=29.4540;MQ=60;MQ0=0;QD=31.76;SB=-91.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:16,8:24:27.09:804,27,0:60:27:0.333
chr1	55521900	.	G	.	.	LowGQX	DP=24;MQ=60;MQ0=0	GT:AD:DP:MQ	.:16:16:60
chr1	55521901	.	G	.	.	LowGQX	DP=23;MQ=60;MQ0=0	GT:AD:DP:MQ	.:15:15:60
chr1	55521902	.	G	.	.	LowGQX	DP=23;MQ=60;MQ0=0	GT:AD:DP:MQ	.:15:15:60
chr1	55521903	.	C	.	.	LowGQX	DP=22;MQ=60;MQ0=0	GT:AD:DP:MQ	.:14:14:60
chr1	55521904	.	G	.	.	LowGQX	DP=22;MQ=60;MQ0=0	GT:AD:DP:MQ	.:14:14:60
chr1	55521905	.	G	.	.	LowGQX	DP=22;MQ=60;MQ0=0	GT:AD:DP:MQ	.:14:14:60
chr1	55521906	.	A	.	.	LowGQX	DP=22;MQ=60;MQ0=0	GT:AD:DP:MQ	.:14:14:60
chr1	55521907	.	G	.	.	PASS	END=55521913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	55522953	.	A	.	.	PASS	END=55523007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	55523008	.	T	.	.	PASS	END=55523032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	55523033	.	A	G	6157.89	PASS	DP=208;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=22.8815;MQ=60;MQ0=0;QD=29.61;SB=-2255.18	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,205:208:99:6158,475,0:60:99:1.000
chr1	55523034	.	G	.	.	PASS	END=55523091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr1	55523092	.	T	.	.	PASS	END=55523228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:272:99:60
chr1	55523229	.	A	.	.	PASS	END=55523238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:246:99:60
chr1	55523658	.	G	.	.	PASS	END=55523683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	55523684	.	C	.	.	PASS	END=55523696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	55523697	.	C	.	.	PASS	END=55523729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	55523730	.	C	.	.	PASS	END=55523773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	55523774	.	A	.	.	PASS	END=55523852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	55523853	.	C	.	.	PASS	END=55523891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	55523892	.	A	.	.	PASS	END=55523916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	55523917	.	G	.	.	PASS	END=55523933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	55524121	.	G	.	.	PASS	END=55524152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	55524153	.	T	.	.	PASS	END=55524184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	55524185	.	T	.	.	PASS	END=55524196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	55524197	.	A	G	1917.72	PASS	BaseQRankSum=-0.331;DP=151;Dels=0.00;FS=16.087;HRun=0;HaplotypeScore=21.0422;MQ=60;MQ0=0;MQRankSum=-0.809;QD=12.70;ReadPosRankSum=-0.002;SB=-778.92	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:69,82:151:99:1948,0,1475:60:99:0.543
chr1	55524198	.	T	.	.	PASS	END=55524214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	55524215	.	G	.	.	PASS	END=55524236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	55524237	.	G	A	2746.32	PASS	BaseQRankSum=3.783;DP=191;Dels=0.00;FS=4.670;HRun=0;HaplotypeScore=33.2351;MQ=60;MQ0=0;MQRankSum=-0.191;QD=14.38;ReadPosRankSum=-0.999;SB=-1573.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:76,115:191:99:2776,0,1535:60:99:0.602
chr1	55524238	.	T	.	.	PASS	END=55524297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	55524298	.	A	.	.	PASS	END=55524326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	55524327	.	G	.	.	PASS	END=55524339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	55524340	.	G	.	.	PASS	END=55524348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	55524349	.	T	.	.	PASS	END=55524360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:59
chr1	55524361	.	T	.	.	PASS	END=55524362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:59
chr1	55524363	.	T	.	.	PASS	END=55524364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:59
chr1	55524365	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:60:59
chr1	55524366	.	G	.	.	PASS	END=55524368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:59
chr1	55524369	.	T	.	.	PASS	END=55524370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:59
chr1	55524371	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:48:59
chr1	55525108	.	T	.	.	PASS	END=55525133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	55525134	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:99:60
chr1	55525135	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:51:60
chr1	55525136	.	C	.	.	PASS	END=55525178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	55525179	.	C	.	.	PASS	END=55525259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	55525260	.	C	.	.	PASS	END=55525306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	55525307	.	A	.	.	PASS	END=55525325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	55525326	.	C	.	.	PASS	END=55525341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	55525342	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:65:60
chr1	55525343	.	G	.	.	PASS	END=55525345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	55525346	.	T	.	.	PASS	END=55525347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	55525348	.	G	.	.	PASS	END=55525361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	55525362	.	T	.	.	PASS	END=55525364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	55525365	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:18:60
chr1	55525366	.	G	.	.	PASS	END=55525368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr1	55525369	.	G	.	.	PASS	END=55525371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	55525372	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	55525373	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:48:60
chr1	55525374	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	55525375	.	C	.	.	PASS	END=55525378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	55525379	.	C	.	.	PASS	END=55525383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	55525384	.	T	.	.	PASS	END=55525387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	55526997	.	A	.	.	PASS	END=55527002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	55527003	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:39:60
chr1	55527004	.	G	.	.	PASS	END=55527006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	55527007	.	T	.	.	PASS	END=55527010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	55527011	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:35:60
chr1	55527012	.	G	.	.	PASS	END=55527019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	55527020	.	C	.	.	PASS	END=55527036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	55527037	.	C	.	.	PASS	END=55527038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	55527039	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:60
chr1	55527040	.	T	.	.	PASS	END=55527048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	55527049	.	C	.	.	PASS	END=55527074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	55527075	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:63:60
chr1	55527076	.	C	.	.	PASS	END=55527097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	55527098	.	G	.	.	PASS	END=55527123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	55527124	.	C	.	.	PASS	END=55527158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	55527159	.	C	.	.	PASS	END=55527237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	55527238	.	G	.	.	PASS	END=55527276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	55527277	.	C	.	.	PASS	END=55527280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	55528991	.	G	.	.	PASS	END=55529003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	55529004	.	C	.	.	PASS	END=55529019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	55529020	.	T	.	.	PASS	END=55529025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	55529026	.	C	.	.	PASS	END=55529062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:60
chr1	55529063	.	G	.	.	PASS	END=55529082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:72:60
chr1	55529083	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:42:60
chr1	55529084	.	A	.	.	PASS	END=55529091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	55529092	.	C	.	.	PASS	END=55529115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	55529116	.	G	.	.	PASS	END=55529137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	55529138	.	T	.	.	PASS	END=55529186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	55529187	.	G	A	3018.52	PASS	DP=122;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.5754;MQ=60;MQ0=0;QD=24.74;SB=-1462.51	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,121:122:99:3052,232,0:60:99:1.000
chr1	55529188	.	G	.	.	PASS	END=55529246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	55529247	.	A	.	.	PASS	END=55529280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	55529281	.	C	.	.	PASS	END=55529298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	55529299	.	T	.	.	PASS	END=55529308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	55534699	.	T	.	.	PASS	END=55534717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	55534718	.	C	.	.	PASS	END=55534742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	55534743	.	C	.	.	PASS	END=55534798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	55537486	.	C	.	.	PASS	END=55537540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	55537541	.	A	.	.	PASS	END=55537593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	55537594	.	T	.	.	PASS	END=55537597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	55537983	.	C	.	.	PASS	END=55538055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	55538056	.	T	.	.	PASS	END=55538082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	55538447	.	A	.	.	PASS	END=55538461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	55538462	.	C	T	698.69	PASS	BaseQRankSum=2.647;DP=35;Dels=0.00;FS=8.500;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.124;QD=19.96;ReadPosRankSum=1.155;SB=-397.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:11,24:35:99:729,0,275:60:99:0.686
chr1	55538463	.	T	.	.	PASS	END=55538469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	55538470	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:69:60
chr1	55538471	.	C	.	.	PASS	END=55538478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	55538479	.	C	.	.	PASS	END=55538546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	55539430	.	T	.	.	PASS	END=55539482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	55539483	.	T	.	.	PASS	END=55539589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	55541059	.	G	.	.	PASS	END=55541107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	55541108	.	G	.	.	PASS	END=55541173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	55541174	.	A	G	796.05	PASS	BaseQRankSum=-1.240;DP=77;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=8.5727;MQ=60;MQ0=0;MQRankSum=0.489;QD=10.34;ReadPosRankSum=2.517;SB=-416.83	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,33:77:99:826,0,1088:60:99:0.429
chr1	55541175	.	C	.	.	PASS	END=55541197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:96:60
chr1	55541198	.	T	.	.	PASS	END=55541204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	55541205	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:69:60
chr1	55541206	.	G	.	.	PASS	END=55541212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	55542891	.	G	.	.	PASS	END=55542896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	55542897	.	T	.	.	PASS	END=55542933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	55542934	.	T	.	.	PASS	END=55542990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	55544210	.	C	.	.	PASS	END=55544261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	55544262	.	G	.	.	PASS	END=55544297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	55544298	.	T	.	.	PASS	END=55544324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	55545160	.	T	.	.	PASS	END=55545223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	55545224	.	G	.	.	PASS	END=55545295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	55545296	.	A	.	.	PASS	END=55545330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	55545331	.	A	.	.	PASS	END=55545332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:289:99:60
chr1	55546994	.	C	.	.	PASS	END=55547039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:96:60
chr1	55547040	.	C	.	.	PASS	END=55547097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	55548941	.	T	.	.	PASS	END=55549005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:97:60
chr1	55549006	.	C	.	.	PASS	END=55549040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	55549444	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:99:60
chr1	55549445	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:75:60
chr1	55549446	.	T	.	.	PASS	END=55549495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	55549496	.	A	.	.	PASS	END=55549534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	55549535	.	C	.	.	PASS	END=55549565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	55549566	.	T	.	.	PASS	END=55549603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	55551613	.	A	.	.	PASS	END=55551638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	55551639	.	G	.	.	PASS	END=55551712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	55555299	.	C	.	.	PASS	END=55555322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	55555323	.	A	.	.	PASS	END=55555413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	55557695	.	C	.	.	PASS	END=55557752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	55557753	.	A	.	.	PASS	END=55557799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	55558433	.	T	.	.	PASS	END=55558492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	55558493	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:72:60
chr1	55558494	.	A	.	.	PASS	END=55558507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	55558508	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:69:60
chr1	55558509	.	T	.	.	PASS	END=55558536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	55558537	.	C	.	.	PASS	END=55558550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	55558551	.	T	.	.	PASS	END=55558589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	55558590	.	C	.	.	PASS	END=55558591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	55559609	.	C	.	.	PASS	END=55559645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	55559646	.	T	.	.	PASS	END=55559702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	55559703	.	C	.	.	PASS	END=55559752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	55559753	.	G	.	.	PASS	END=55559760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	55560927	.	C	.	.	PASS	END=55561065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:252:99:60
chr1	55561066	.	T	.	.	PASS	END=55561069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	55562170	.	C	.	.	PASS	END=55562215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	55562216	.	A	.	.	PASS	END=55562295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	55562624	.	C	.	.	PASS	END=55562653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	55562654	.	G	.	.	PASS	END=55562664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	55562665	.	C	.	.	PASS	END=55562674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	55562675	.	G	.	.	PASS	END=55562817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	55562818	.	A	.	.	PASS	END=55562824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	55562825	.	C	.	.	PASS	END=55562845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	55563270	.	C	.	.	PASS	END=55563316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	55563317	.	A	.	.	PASS	END=55563379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	55563380	.	A	.	.	PASS	END=55563390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	55563615	.	C	.	.	PASS	END=55563636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	55563637	.	G	.	.	PASS	END=55563725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	55563726	.	T	.	.	PASS	END=55563757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	55564140	.	T	.	.	PASS	END=55564154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:78:60
chr1	55564155	.	G	.	.	PASS	END=55564176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	55564177	.	G	.	.	PASS	END=55564239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	55565383	.	A	.	.	PASS	END=55565453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	55565454	.	T	.	.	PASS	END=55565472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	55565473	.	G	.	.	PASS	END=55565515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	55565516	.	A	.	.	PASS	END=55565542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	55566511	.	C	.	.	PASS	END=55566535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	55566536	.	G	.	.	PASS	END=55566615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	55566616	.	C	.	.	PASS	END=55566637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr1	55567206	.	G	.	.	PASS	END=55567209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	55567210	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:47:60
chr1	55567211	.	G	.	.	PASS	END=55567213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	55567214	.	C	.	.	PASS	END=55567230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	55567231	.	C	.	.	PASS	END=55567274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	55567275	.	C	.	.	PASS	END=55567303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	55567304	.	T	.	.	PASS	END=55567360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	55567361	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:75:58:60
chr1	55567362	.	C	.	.	PASS	END=55567370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	55567371	.	A	.	.	PASS	END=55567376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	55569548	.	C	.	.	PASS	END=55569665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	55569666	.	T	.	.	PASS	END=55569693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	55571768	.	T	.	.	PASS	END=55571936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	55572911	.	C	.	.	PASS	END=55572937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	55572938	.	A	.	.	PASS	END=55573013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	55573014	.	C	.	.	PASS	END=55573079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	55573080	.	T	.	.	PASS	END=55573087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	55573088	.	T	.	.	PASS	END=55573103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	55575839	.	A	.	.	PASS	END=55575857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	55575858	.	T	.	.	PASS	END=55575918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	55575919	.	T	.	.	PASS	END=55575938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	55586268	.	C	.	.	PASS	END=55586314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr1	55586315	.	G	.	.	PASS	END=55586398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:265:99:60
chr1	55586399	.	T	.	.	PASS	END=55586416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	55586417	.	C	.	.	PASS	END=55586429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	55587094	.	G	.	.	PASS	END=55587168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	55587169	.	A	.	.	PASS	END=55587193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	55589119	.	C	.	.	PASS	END=55589168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	55589169	.	C	.	.	PASS	END=55589260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	55589261	.	A	.	.	PASS	END=55589275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	55590141	.	C	.	.	PASS	END=55590171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	55590172	.	C	.	.	PASS	END=55590281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	55590282	.	A	.	.	PASS	END=55590301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	55590992	.	C	.	.	PASS	END=55591022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	55591023	.	T	.	.	PASS	END=55591158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	55591159	.	A	.	.	PASS	END=55591221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	55591334	.	A	.	.	PASS	END=55591376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	55591377	.	T	.	.	PASS	END=55591414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	55591415	.	T	.	.	PASS	END=55591433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	55595149	.	C	.	.	PASS	END=55595205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	55595206	.	C	.	.	PASS	END=55595240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	55595241	.	T	.	.	PASS	END=55595248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	55598217	.	C	.	.	PASS	END=55598233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	55598234	.	A	.	.	PASS	END=55598243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	55598244	.	T	.	.	PASS	END=55598328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	55598329	.	T	.	.	PASS	END=55598373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	55599740	.	T	.	.	PASS	END=55599831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	55599832	.	T	.	.	PASS	END=55599839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	55599994	.	T	.	.	PASS	END=55600071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	55600072	.	A	.	.	PASS	END=55600093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	55603187	.	C	.	.	PASS	END=55603207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	55603208	.	A	.	.	PASS	END=55603291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	55603292	.	T	.	.	PASS	END=55603340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	55603341	.	T	.	.	PASS	END=55603361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	55603478	.	C	.	.	PASS	END=55603526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	55603527	.	C	.	.	PASS	END=55603562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	55603563	.	T	.	.	PASS	END=55603577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	55604280	.	C	.	.	PASS	END=55604297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	55604298	.	C	.	.	PASS	END=55604313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	55604314	.	G	.	.	PASS	END=55604391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	55604600	.	A	.	.	PASS	END=55604615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	55604616	.	C	.	.	PASS	END=55604641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	55604642	.	G	.	.	PASS	END=55604692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	55604693	.	A	.	.	PASS	END=55604699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	55607288	.	C	.	.	PASS	END=55607346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	55607347	.	T	.	.	PASS	END=55607392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	55607393	.	T	.	.	PASS	END=55607403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	55607404	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:99:60
chr1	55608392	.	G	.	.	PASS	END=55608409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	55608410	.	C	.	.	PASS	END=55608491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	55608611	.	G	.	.	PASS	END=55608643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	55608644	.	A	.	.	PASS	END=55608715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	55608716	.	G	.	.	PASS	END=55608792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	55609788	.	T	.	.	PASS	END=55609887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	55611670	.	C	.	.	PASS	END=55611753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	55611754	.	T	.	.	PASS	END=55611772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:79:60
chr1	55611773	.	C	.	.	PASS	END=55611782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:96:60
chr1	55612561	.	A	.	.	PASS	END=55612595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	55612596	.	T	.	.	PASS	END=55612733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	55613321	.	C	.	.	PASS	END=55613323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	55613324	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:18:60
chr1	55613325	.	C	.	.	PASS	END=55613331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	55613332	.	G	.	.	PASS	END=55613340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	55613341	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:33:60
chr1	55613342	.	C	.	.	PASS	END=55613378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	55613379	.	G	.	.	PASS	END=55613389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	55613390	.	C	.	.	PASS	END=55613471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	55614085	.	T	.	.	PASS	END=55614127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	55614128	.	A	.	.	PASS	END=55614138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	55614139	.	G	.	.	PASS	END=55614234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	55614235	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:74:66:60
chr1	55614236	.	T	.	.	PASS	END=55614243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	55619462	.	T	.	.	PASS	END=55619489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	55619490	.	G	.	.	PASS	END=55619493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	55619494	.	A	.	.	PASS	END=55619497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	55619498	.	T	.	.	PASS	END=55619516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	55619517	.	A	.	.	PASS	END=55619567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	55619568	.	T	.	.	PASS	END=55619616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	55619791	.	C	.	.	PASS	END=55619809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	55619810	.	G	.	.	PASS	END=55619953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	55620042	.	G	.	.	PASS	END=55620095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	55620096	.	C	.	.	PASS	END=55620127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	55620128	.	A	.	.	PASS	END=55620141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	55620343	.	C	.	.	PASS	END=55620365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	55620366	.	T	.	.	PASS	END=55620433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	55620434	.	A	.	.	PASS	END=55620451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	55622620	.	C	.	.	PASS	END=55622708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	55622709	.	G	.	.	PASS	END=55622721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	55622722	.	T	.	.	PASS	END=55622724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	55622878	.	A	.	.	PASS	END=55622946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	55622947	.	G	.	.	PASS	END=55623043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	55624550	.	C	.	.	PASS	END=55624696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	55624697	.	T	.	.	PASS	END=55624709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	55625271	.	A	.	.	PASS	END=55625305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	55625306	.	T	.	.	PASS	END=55625354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	55625355	.	T	.	.	PASS	END=55625370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	55627801	.	T	.	.	PASS	END=55627830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	55627831	.	T	.	.	PASS	END=55627858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	55627859	.	G	.	.	PASS	END=55627868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	55627869	.	T	.	.	PASS	END=55627887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	55627888	.	T	.	.	PASS	END=55627906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	55627907	.	C	.	.	PASS	END=55627954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	55631541	.	A	.	.	PASS	END=55631563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	55631564	.	T	.	.	PASS	END=55631627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	55631628	.	G	.	.	PASS	END=55631640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	55632150	.	A	.	.	PASS	END=55632175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	55632176	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:64:60
chr1	55632177	.	T	.	.	PASS	END=55632252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	55632253	.	A	.	.	PASS	END=55632308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:96:60
chr1	55637228	.	C	.	.	PASS	END=55637261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	55637262	.	C	.	.	PASS	END=55637340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	55637341	.	G	.	.	PASS	END=55637351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	55638049	.	C	.	.	PASS	END=55638071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	55638072	.	C	.	.	PASS	END=55638074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	55638075	.	G	A	801.82	PASS	BaseQRankSum=0.631;DP=70;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=12.3604;MQ=60;MQ0=0;MQRankSum=0.402;QD=11.45;ReadPosRankSum=1.532;SB=-393.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,36:70:99:832,0,909:60:99:0.522
chr1	55638076	.	T	.	.	PASS	END=55638185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	55638186	.	G	.	.	PASS	END=55638193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	55642033	.	A	.	.	PASS	END=55642064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	55642065	.	G	.	.	PASS	END=55642115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	55642116	.	C	.	.	PASS	END=55642132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	55643639	.	C	.	.	PASS	END=55643656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	55643657	.	G	.	.	PASS	END=55643794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	55643795	.	T	.	.	PASS	END=55643821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	55643822	.	A	.	.	PASS	END=55643828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	55680462	.	C	.	.	PASS	END=55680484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chr1	55680485	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	55680486	.	A	.	.	LowGQX	END=55680503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	55680504	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:2:60
chr1	55680505	.	G	.	.	LowGQX	END=55680514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	55680515	.	C	.	.	LowGQX	END=55680521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	55680522	.	T	.	.	LowGQX	END=55680524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	55680525	.	T	.	.	LowGQX	END=55680538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	55680539	.	G	.	.	LowGQX	END=55680549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	55680550	.	G	.	.	LowGQX	END=55680552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	55680553	.	G	.	.	LowGQX	END=55680557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	55680558	.	C	.	.	PASS	END=55680573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	55680574	.	C	.	.	PASS	END=55680580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	55680581	.	C	.	.	PASS	END=55680585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	55680586	.	G	.	.	PASS	END=55680589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	55680590	.	G	.	.	PASS	END=55680595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	55680596	.	G	.	.	PASS	END=55680615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	55680616	.	G	.	.	PASS	END=55680632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	55680633	.	C	.	.	PASS	END=55680658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	55680659	.	T	.	.	PASS	END=55680689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	55680690	.	C	.	.	PASS	END=55680768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	55680769	.	C	.	.	PASS	END=55680786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	56197046	.	A	.	.	LowGQX	END=56197051	GT	./.
chr1	56197052	.	A	.	.	LowGQX	END=56197256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	56197257	.	T	.	.	LowGQX	END=56197792	GT	./.
chr1	56962221	.	A	.	.	LowGQX	END=56962350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	56977576	.	A	.	.	LowGQX	END=56977826	GT	./.
chr1	56989423	.	T	.	.	LowGQX	END=56989426	GT	./.
chr1	56989427	.	G	.	.	LowGQX	END=56989573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	56989947	.	A	.	.	LowGQX	END=56990228	GT	./.
chr1	57002625	.	A	.	.	LowGQX	END=57002786	GT	./.
chr1	57044518	.	C	.	.	LowGQX	END=57044728	GT	./.
chr1	57110998	.	A	.	.	PASS	END=57111024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	57111025	.	G	.	.	PASS	END=57111028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	57111029	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:21:60
chr1	57111030	.	A	.	.	PASS	END=57111042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	57111043	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:45:60
chr1	57111044	.	G	.	.	PASS	END=57111067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:57:60
chr1	57111068	.	A	.	.	PASS	END=57111089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:60:60
chr1	57111090	.	G	.	.	PASS	END=57111118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:69:60
chr1	57111119	.	A	.	.	PASS	END=57111137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:60:60
chr1	57111138	.	C	.	.	PASS	END=57111145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:48:60
chr1	57111146	.	A	.	.	PASS	END=57111154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:45:60
chr1	57111155	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:63:60
chr1	57111156	.	T	.	.	PASS	END=57111162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:42:60
chr1	57111163	.	C	.	.	PASS	END=57111177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr1	57111178	.	T	.	.	PASS	END=57111180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:48:60
chr1	57111181	.	G	.	.	PASS	END=57111186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	57111187	.	C	.	.	PASS	END=57111193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	57111194	.	A	.	.	PASS	END=57111196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chr1	57111197	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:21:60
chr1	57111198	.	G	.	.	PASS	END=57111202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	57111203	.	A	.	.	PASS	END=57111207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chr1	57111208	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:42:60
chr1	57140052	.	A	.	.	PASS	END=57140074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	57140075	.	G	.	.	PASS	END=57140161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	57140162	.	T	.	.	PASS	END=57140197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	57157064	.	A	.	.	PASS	END=57157163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	57157989	.	A	.	.	PASS	END=57157999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	57158000	.	T	.	.	PASS	END=57158037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	57158038	.	A	.	.	PASS	END=57158085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	57158086	.	A	.	.	PASS	END=57158141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	57158142	.	G	.	.	PASS	END=57158177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	57159432	.	T	.	.	LowGQX	END=57159441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	57159442	.	A	.	.	PASS	END=57159450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	57159451	.	G	.	.	PASS	END=57159480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	57159481	.	T	.	.	PASS	END=57159512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	57159513	.	T	.	.	PASS	END=57159531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	57161606	.	A	.	.	PASS	END=57161633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	57161634	.	T	.	.	PASS	END=57161703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	57161704	.	T	.	.	PASS	END=57161825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	57161826	.	A	.	.	PASS	END=57161834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	57169642	.	A	.	.	PASS	END=57169675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	57169676	.	G	.	.	PASS	END=57170024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	57170025	.	T	.	.	PASS	END=57170127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	57170128	.	C	.	.	PASS	END=57170150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	57171763	.	A	.	.	PASS	END=57171773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	57171774	.	G	.	.	PASS	END=57171893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	57173146	.	A	.	.	PASS	END=57173174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	57173175	.	C	.	.	PASS	END=57173290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	57173291	.	G	.	.	PASS	END=57173341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	57173342	.	T	.	.	PASS	END=57173363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	57173364	.	T	.	.	PASS	END=57173388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	57185305	.	T	.	.	LowGQX	END=57185404	GT	./.
chr1	57185662	.	T	.	.	LowGQX	END=57185761	GT	./.
chr1	57185844	.	A	.	.	LowGQX	END=57186004	GT	./.
chr1	57189258	.	T	.	.	LowGQX	END=57189408	GT	./.
chr1	57192164	.	T	.	.	LowGQX	END=57192263	GT	./.
chr1	57202688	.	G	.	.	LowGQX	END=57202712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57202713	.	A	.	.	LowGQX	END=57202840	GT	./.
chr1	57204263	.	G	.	.	LowGQX	END=57204362	GT	./.
chr1	57206368	.	A	.	.	LowGQX	END=57206470	GT	./.
chr1	57207762	.	C	.	.	LowGQX	END=57207914	GT	./.
chr1	57209670	.	C	.	.	LowGQX	END=57209769	GT	./.
chr1	57209823	.	A	.	.	LowGQX	END=57209941	GT	./.
chr1	57216715	.	A	.	.	LowGQX	END=57216878	GT	./.
chr1	57219510	.	A	.	.	LowGQX	END=57219518	GT	./.
chr1	57219519	.	A	.	.	LowGQX	END=57219524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57219525	.	T	.	.	LowGQX	.	GT	./.
chr1	57219526	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57219527	.	T	.	.	LowGQX	.	GT	./.
chr1	57219528	.	G	.	.	LowGQX	END=57219536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57219537	.	T	.	.	LowGQX	.	GT	./.
chr1	57219538	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57219539	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	57219540	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57219541	.	T	.	.	LowGQX	.	GT	./.
chr1	57219542	.	T	.	.	LowGQX	END=57219544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57219545	.	T	.	.	LowGQX	.	GT	./.
chr1	57219546	.	G	.	.	LowGQX	END=57219555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57219556	.	G	.	.	LowGQX	.	GT	./.
chr1	57219557	.	T	.	.	LowGQX	END=57219558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57219559	.	T	.	.	LowGQX	.	GT	./.
chr1	57219560	.	C	.	.	LowGQX	END=57219585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57219586	.	T	.	.	LowGQX	.	GT	./.
chr1	57219587	.	T	.	.	LowGQX	END=57219591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57219592	.	T	.	.	LowGQX	.	GT	./.
chr1	57219593	.	A	.	.	LowGQX	END=57219610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57221535	.	G	.	.	LowGQX	END=57221634	GT	./.
chr1	57224357	.	T	.	.	LowGQX	END=57224456	GT	./.
chr1	57233450	.	C	.	.	LowGQX	END=57233613	GT	./.
chr1	57252815	.	A	.	.	LowGQX	END=57252914	GT	./.
chr1	57254548	.	T	.	.	LowGQX	END=57254556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	57254557	.	A	.	.	LowGQX	.	GT	./.
chr1	57254558	.	G	.	.	LowGQX	END=57254592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57254593	.	A	.	.	LowGQX	.	GT	./.
chr1	57254594	.	G	.	.	LowGQX	END=57254601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57254602	.	T	.	.	LowGQX	.	GT	./.
chr1	57254603	.	G	.	.	LowGQX	END=57254608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57254609	.	T	.	.	LowGQX	END=57254809	GT	./.
chr1	57257727	.	A	.	.	LowGQX	END=57258294	GT	./.
chr1	57258295	.	G	.	.	LowGQX	END=57258414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57258415	.	A	.	.	LowGQX	.	GT	./.
chr1	57258416	.	G	.	.	LowGQX	END=57258445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57258446	.	C	.	.	LowGQX	.	GT	./.
chr1	57258447	.	T	.	.	LowGQX	END=57258478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57284910	.	G	.	.	LowGQX	END=57284986	GT	./.
chr1	57284987	.	G	.	.	LowGQX	END=57285009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	57320523	.	A	.	.	PASS	END=57320543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:97:60
chr1	57320544	.	A	.	.	PASS	END=57320645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	57320646	.	G	.	.	PASS	END=57320693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	57320694	.	C	.	.	PASS	END=57320702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	57333231	.	T	.	.	PASS	END=57333259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	57333260	.	C	.	.	PASS	END=57333281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	57333282	.	G	.	.	PASS	END=57333349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	57333350	.	A	.	.	PASS	END=57333390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:82:60
chr1	57333391	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:73:60
chr1	57333392	.	C	.	.	PASS	END=57333407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	57333408	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:72:60
chr1	57333409	.	A	.	.	PASS	END=57333426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	57340571	.	T	.	.	PASS	END=57340584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr1	57340585	.	G	.	.	PASS	END=57340593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	57340594	.	A	.	.	PASS	END=57340648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:90:60
chr1	57340649	.	A	.	.	PASS	END=57340733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	57340734	.	A	.	.	PASS	END=57340761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	57340762	.	G	.	.	PASS	END=57340793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	57340794	.	C	.	.	PASS	END=57340797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	57340798	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:69:60
chr1	57340799	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:42:60
chr1	57340800	.	C	.	.	PASS	END=57340817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	57341684	.	G	.	.	PASS	END=57341696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	57341697	.	G	.	.	PASS	END=57341702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	57341703	.	C	.	.	PASS	END=57341713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	57341714	.	G	.	.	PASS	END=57341726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	57341727	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:24:60
chr1	57341728	.	T	.	.	PASS	END=57341742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	57341743	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:30:60
chr1	57341744	.	T	.	.	PASS	END=57341747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	57341748	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:47:60
chr1	57341749	.	C	.	.	PASS	END=57341759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	57341760	.	G	.	.	PASS	END=57341771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	57341772	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:69:60
chr1	57341773	.	C	.	.	PASS	END=57341788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	57341789	.	G	.	.	PASS	END=57341826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	57341827	.	G	.	.	PASS	END=57341930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	57341931	.	C	.	.	PASS	END=57341933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	57347067	.	T	.	.	PASS	END=57347079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	57347080	.	A	.	.	PASS	END=57347107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	57347108	.	T	.	.	PASS	END=57347119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	57347120	.	A	.	.	PASS	END=57347130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr1	57347131	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:69:60
chr1	57347132	.	C	.	.	PASS	END=57347133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:93:60
chr1	57347134	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:60:60
chr1	57347135	.	A	.	.	PASS	END=57347149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	57347150	.	G	.	.	PASS	END=57347168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	57347169	.	T	.	.	PASS	END=57347180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	57347181	.	G	.	.	PASS	END=57347195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	57347196	.	C	.	.	PASS	END=57347222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	57347223	.	T	.	.	PASS	END=57347328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	57347329	.	C	.	.	PASS	END=57347349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	57347350	.	T	.	.	PASS	END=57347358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	57349103	.	G	.	.	PASS	END=57349114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	57349115	.	T	.	.	PASS	END=57349120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	57349121	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:67:60
chr1	57349122	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:99:60
chr1	57349123	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:72:60
chr1	57349124	.	A	.	.	PASS	END=57349147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	57349148	.	T	.	.	PASS	END=57349165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	57349166	.	A	.	.	PASS	END=57349245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	57349246	.	A	.	.	PASS	END=57349270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	57349271	.	G	.	.	PASS	END=57349298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	57349299	.	T	.	.	PASS	END=57349314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	57349315	.	C	.	.	PASS	END=57349349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:59
chr1	57349350	.	A	.	.	PASS	END=57349372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	57349373	.	T	.	.	PASS	END=57349389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr1	57349390	.	C	.	.	PASS	END=57349394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:39:60
chr1	57349395	.	T	.	.	PASS	END=57349398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	57349399	.	C	.	.	LowGQX	END=57349401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	57349402	.	T	.	.	LowGQX	END=57349405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	57351549	.	A	.	.	PASS	END=57351563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr1	57351564	.	T	.	.	PASS	END=57351586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	57351587	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:62:60
chr1	57351588	.	G	.	.	PASS	END=57351626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	57351627	.	A	.	.	PASS	END=57351636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	57351637	.	C	.	.	PASS	END=57351668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	57351669	.	A	.	.	PASS	END=57351705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	57351706	.	T	.	.	PASS	END=57351735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	57351736	.	C	.	.	PASS	END=57351798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	57351799	.	A	.	.	PASS	END=57351844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	57351845	.	G	.	.	PASS	END=57351856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	57351857	.	C	.	.	PASS	END=57351868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	57351869	.	A	.	.	PASS	END=57351873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	57351874	.	T	.	.	PASS	END=57351885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	57351886	.	C	.	.	PASS	END=57351891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	57372289	.	A	.	.	PASS	END=57372332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	57372333	.	G	.	.	PASS	END=57372376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	57372377	.	C	.	.	PASS	END=57372423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	57372424	.	T	.	.	PASS	END=57372485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:84:60
chr1	57372486	.	C	.	.	PASS	END=57372506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	57372507	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:70:60
chr1	57372508	.	T	.	.	PASS	END=57372516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	57373578	.	C	.	.	PASS	END=57373584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	57373585	.	C	.	.	PASS	END=57373596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	57373597	.	T	.	.	PASS	END=57373649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	57373650	.	C	.	.	PASS	END=57373713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	57373714	.	G	.	.	PASS	END=57373745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	57373746	.	G	.	.	PASS	END=57373792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	57373793	.	C	.	.	PASS	END=57373807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	57373808	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:76:60
chr1	57373809	.	A	.	.	PASS	END=57373837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	57378025	.	G	.	.	PASS	END=57378030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	57378031	.	A	.	.	PASS	END=57378037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	57378038	.	G	.	.	PASS	END=57378054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	57378055	.	G	.	.	PASS	END=57378072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	57378073	.	C	.	.	PASS	END=57378086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	57378087	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:73:60
chr1	57378088	.	C	.	.	PASS	END=57378108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	57378109	.	A	.	.	PASS	END=57378133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	57378134	.	G	.	.	PASS	END=57378171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	57378172	.	G	.	.	PASS	END=57378252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	57378253	.	C	.	.	PASS	END=57378304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	57378305	.	T	.	.	PASS	END=57378321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:96:60
chr1	57378322	.	A	.	.	PASS	END=57378338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	57378339	.	G	.	.	PASS	END=57378349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:98:60
chr1	57383187	.	C	.	.	PASS	END=57383199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	57383200	.	A	.	.	PASS	END=57383251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	57383252	.	G	.	.	PASS	END=57383278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	57383279	.	T	.	.	PASS	END=57383341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	57383342	.	G	.	.	PASS	END=57383393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	57383394	.	C	.	.	PASS	END=57383406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	57383407	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:39:60
chr1	57383408	.	T	.	.	PASS	END=57383414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	57383415	.	G	.	.	PASS	END=57383427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	57383428	.	T	.	.	PASS	END=57383431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	57383432	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:33:60
chr1	57383433	.	C	.	.	PASS	END=57383440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	57395026	.	T	.	.	PASS	END=57395032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	57395033	.	G	.	.	PASS	END=57395045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	57395046	.	C	.	.	PASS	END=57395061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	57395062	.	C	.	.	PASS	END=57395077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	57395078	.	T	.	.	PASS	END=57395095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	57395096	.	T	.	.	PASS	END=57395141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	57395142	.	G	.	.	PASS	END=57395226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	57395227	.	G	.	.	PASS	END=57395250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	57395251	.	T	C	2711.94	PASS	DP=100;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;QD=27.12;SB=-1504.71	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,100:100:99:2745,205,0:60:99:1.000
chr1	57395252	.	A	.	.	PASS	END=57395278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	57395279	.	T	.	.	PASS	END=57395282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	57397427	.	T	.	.	PASS	END=57397519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	57397520	.	T	.	.	PASS	END=57397544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	57397545	.	C	.	.	PASS	END=57397560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:91:60
chr1	57397561	.	C	.	.	PASS	END=57397593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	57397594	.	A	.	.	PASS	END=57397602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	57398957	.	T	.	.	PASS	END=57398966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	57398967	.	T	.	.	PASS	END=57399014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	57399015	.	G	.	.	PASS	END=57399108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	57399109	.	G	.	.	PASS	END=57399150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	57399151	.	A	.	.	PASS	END=57399199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	57399200	.	A	.	.	PASS	END=57399212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	57406471	.	A	.	.	PASS	END=57406490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	57406491	.	A	.	.	PASS	END=57406495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	57406496	.	A	.	.	PASS	END=57406510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	57406511	.	G	.	.	PASS	END=57406536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	57406537	.	G	.	.	PASS	END=57406556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	57406557	.	C	.	.	PASS	END=57406598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	57406599	.	G	.	.	PASS	END=57406707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	57406708	.	A	.	.	PASS	END=57406736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:93:60
chr1	57409318	.	C	.	.	PASS	END=57409328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	57409329	.	A	G	184.57	PASS	BaseQRankSum=-1.349;DP=26;Dels=0.00;FS=4.224;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=0.052;QD=7.10;ReadPosRankSum=0.571;SB=-119.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:15,11:26:99:215,0,459:60:99:0.423
chr1	57409330	.	A	.	.	PASS	END=57409339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	57409340	.	T	.	.	PASS	END=57409353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	57409354	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:99:60
chr1	57409355	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:66:60
chr1	57409356	.	C	.	.	PASS	END=57409400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr1	57409401	.	C	.	.	PASS	END=57409420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	57409421	.	G	.	.	PASS	END=57409491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	57409492	.	T	.	.	PASS	END=57409544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	57409545	.	C	.	.	PASS	END=57409548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	57411443	.	A	.	.	PASS	END=57411444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	57411445	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	57411446	.	A	.	.	PASS	END=57411459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	57411460	.	T	.	.	PASS	END=57411477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	57411478	.	C	.	.	PASS	END=57411482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	57411483	.	G	.	.	PASS	END=57411487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	57411488	.	G	.	.	PASS	END=57411508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	57411509	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:33:60
chr1	57411510	.	C	.	.	PASS	END=57411522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	57411523	.	A	.	.	PASS	END=57411543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	57411544	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:75:60
chr1	57411545	.	C	.	.	PASS	END=57411556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	57411557	.	C	.	.	PASS	END=57411567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	57411568	.	T	.	.	PASS	END=57411614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	57411615	.	G	.	.	PASS	END=57411683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	57411684	.	C	.	.	PASS	END=57411714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	57411715	.	G	.	.	PASS	END=57411753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	57411754	.	G	.	.	PASS	END=57411767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	57411768	.	T	.	.	PASS	END=57411785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	57415177	.	A	.	.	PASS	END=57415190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	57415191	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:66:60
chr1	57415192	.	A	.	.	PASS	END=57415193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	57415194	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:75:60
chr1	57415195	.	A	.	.	PASS	END=57415228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	57415229	.	G	.	.	PASS	END=57415250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	57415251	.	T	.	.	PASS	END=57415274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	57415275	.	C	.	.	PASS	END=57415309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	57415310	.	G	A	1330.75	PASS	BaseQRankSum=1.426;DP=121;Dels=0.00;FS=1.619;HRun=1;HaplotypeScore=0.9997;MQ=60;MQ0=0;MQRankSum=0.383;QD=11.00;ReadPosRankSum=-0.206;SB=-546.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:67,54:121:99:1361,0,1808:60:99:0.446
chr1	57415311	.	G	.	.	PASS	END=57415402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	57415403	.	A	.	.	PASS	END=57415425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	57415426	.	C	.	.	PASS	END=57415476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	57417670	.	A	.	.	PASS	END=57417671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	57417672	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:64:60
chr1	57417673	.	T	.	.	PASS	END=57417719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	57417720	.	C	.	.	PASS	END=57417742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	57417743	.	T	.	.	PASS	END=57417805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	57417806	.	C	.	.	PASS	END=57417878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	57417879	.	A	.	.	PASS	END=57417904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	57420308	.	C	.	.	PASS	END=57420329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:93:60
chr1	57420330	.	A	.	.	PASS	END=57420374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	57420375	.	C	.	.	PASS	END=57420465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	57420466	.	C	.	.	PASS	END=57420504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	57420505	.	A	.	.	PASS	END=57420529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	57420530	.	C	.	.	PASS	END=57420537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	57420538	.	T	.	.	PASS	END=57420551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	57422391	.	A	.	.	PASS	END=57422416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	57422417	.	C	.	.	PASS	END=57422438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	57422439	.	T	.	.	PASS	END=57422466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	57422467	.	A	.	.	PASS	END=57422483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	57422484	.	C	T	3797.33	PASS	DP=136;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=14.2038;MQ=60;MQ0=0;QD=27.92;SB=-2245.62	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,136:136:99:3797,277,0:60:99:1.000
chr1	57422485	.	G	.	.	PASS	END=57422510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	57422511	.	C	T	1721.49	PASS	BaseQRankSum=4.227;DP=138;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=12.3627;MQ=60;MQ0=0;MQRankSum=-0.434;QD=12.47;ReadPosRankSum=1.890;SB=-1094.38	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:62,76:138:99:1751,0,1379:60:99:0.551
chr1	57422512	.	G	.	.	PASS	END=57422556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	57422557	.	G	.	.	PASS	END=57422583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	57422584	.	C	.	.	PASS	END=57422594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	57422595	.	A	.	.	PASS	END=57422605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	57422606	.	G	.	.	PASS	END=57422630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	57422631	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:75:60
chr1	57422632	.	A	.	.	PASS	END=57422634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	57425183	.	G	.	.	LowGQX	END=57425282	GT	./.
chr1	57425642	.	G	.	.	PASS	END=57425661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	57425662	.	G	.	.	PASS	END=57425709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	57425710	.	G	.	.	PASS	END=57425736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	57425737	.	T	.	.	PASS	END=57425769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	57425770	.	C	.	.	PASS	END=57425887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:265:99:60
chr1	57425888	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:264:99:60
chr1	57425888	.	AG	A	5166.37	PASS	BaseQRankSum=-0.607;DP=264;FS=1.492;HRun=3;HaplotypeScore=361.8845;MQ=60;MQ0=0;MQRankSum=0.850;QD=19.57;ReadPosRankSum=-1.126;SB=-2366.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:117,147:264:99:5166,0,3885:60:99:0.557
chr1	57425889	.	G	.	282.80	PASS	DP=264;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:117:117:99:60:99
chr1	57425890	.	G	.	.	PASS	END=57425900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:250:99:60
chr1	57431479	.	A	.	.	PASS	END=57431485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	57431486	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:78:70:60
chr1	57431487	.	T	.	.	PASS	END=57431527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	57431528	.	A	.	.	PASS	END=57431563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	57431564	.	C	.	.	PASS	END=57431580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	57431581	.	T	.	.	PASS	END=57431599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	57431600	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:52:60
chr1	57431601	.	C	.	.	PASS	END=57431607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	57431608	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:36:60
chr1	57431609	.	T	.	.	PASS	END=57431615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	57431616	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:1:60
chr1	57431617	.	T	.	.	PASS	END=57431640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	57431641	.	A	.	.	PASS	END=57431649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	57431650	.	A	.	.	PASS	END=57431661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	57431662	.	C	.	.	PASS	END=57431672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	57476366	.	A	.	.	LowGQX	END=57476465	GT	./.
chr1	57476816	.	A	.	.	LowGQX	END=57476911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57476912	.	G	.	.	LowGQX	END=57476947	GT	./.
chr1	57480554	.	A	.	.	LowGQX	END=57480629	GT	./.
chr1	57480630	.	T	.	.	LowGQX	END=57480634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480635	.	A	.	.	LowGQX	.	GT	./.
chr1	57480636	.	T	.	.	LowGQX	END=57480643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480644	.	C	.	.	LowGQX	.	GT	./.
chr1	57480645	.	A	.	.	LowGQX	END=57480667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480668	.	G	.	.	LowGQX	.	GT	./.
chr1	57480669	.	G	.	.	LowGQX	END=57480671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480672	.	A	.	.	LowGQX	.	GT	./.
chr1	57480673	.	A	.	.	LowGQX	END=57480683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480684	.	G	.	.	LowGQX	END=57480687	GT	./.
chr1	57480688	.	A	.	.	LowGQX	END=57480691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480692	.	G	.	.	LowGQX	.	GT	./.
chr1	57480693	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480694	.	G	.	.	LowGQX	.	GT	./.
chr1	57480695	.	G	.	.	LowGQX	END=57480701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480702	.	T	.	.	LowGQX	.	GT	./.
chr1	57480703	.	G	.	.	LowGQX	END=57480704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480705	.	T	.	.	LowGQX	.	GT	./.
chr1	57480706	.	C	.	.	LowGQX	END=57480709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480710	.	T	.	.	LowGQX	END=57480711	GT	./.
chr1	57480712	.	T	.	.	LowGQX	END=57480721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480722	.	C	.	.	LowGQX	END=57480723	GT	./.
chr1	57480724	.	C	.	.	LowGQX	END=57480747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480748	.	A	.	.	LowGQX	.	GT	./.
chr1	57480749	.	A	.	.	LowGQX	END=57480751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480752	.	C	.	.	LowGQX	.	GT	./.
chr1	57480753	.	T	.	.	LowGQX	END=57480756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480757	.	A	.	.	LowGQX	.	GT	./.
chr1	57480758	.	C	.	.	LowGQX	END=57480767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480768	.	C	.	.	LowGQX	.	GT	./.
chr1	57480769	.	C	.	.	LowGQX	END=57480779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480780	.	C	.	.	LowGQX	END=57480793	GT	./.
chr1	57480794	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480795	.	T	.	.	LowGQX	.	GT	./.
chr1	57480796	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480797	.	T	.	.	LowGQX	END=57480798	GT	./.
chr1	57480799	.	G	.	.	LowGQX	END=57480807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480808	.	T	.	.	LowGQX	.	GT	./.
chr1	57480809	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480810	.	G	.	.	LowGQX	.	GT	./.
chr1	57480811	.	T	.	.	LowGQX	END=57480813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480814	.	A	.	.	LowGQX	.	GT	./.
chr1	57480815	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480816	.	T	.	.	LowGQX	.	GT	./.
chr1	57480817	.	C	.	.	LowGQX	END=57480838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480839	.	A	.	.	LowGQX	.	GT	./.
chr1	57480840	.	A	.	.	LowGQX	END=57480846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480847	.	T	.	.	LowGQX	.	GT	./.
chr1	57480848	.	G	.	.	LowGQX	END=57480863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480864	.	A	.	.	LowGQX	.	GT	./.
chr1	57480865	.	T	.	.	LowGQX	END=57480876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480877	.	A	.	.	LowGQX	.	GT	./.
chr1	57480878	.	A	.	.	LowGQX	END=57480889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480890	.	T	.	.	LowGQX	END=57480891	GT	./.
chr1	57480892	.	G	.	.	LowGQX	END=57480910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480911	.	T	.	.	LowGQX	.	GT	./.
chr1	57480912	.	G	.	.	LowGQX	END=57480920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480921	.	T	.	.	LowGQX	.	GT	./.
chr1	57480922	.	G	.	.	LowGQX	END=57480934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480935	.	T	.	.	LowGQX	.	GT	./.
chr1	57480936	.	G	.	.	LowGQX	END=57480944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57480945	.	T	.	.	LowGQX	END=57481106	GT	./.
chr1	57489202	.	A	.	.	LowGQX	END=57489314	GT	./.
chr1	57491576	.	G	.	.	LowGQX	END=57491791	GT	./.
chr1	57499033	.	A	.	.	LowGQX	END=57499059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57499060	.	T	.	.	LowGQX	END=57499132	GT	./.
chr1	57499171	.	A	.	.	LowGQX	END=57499212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57499213	.	A	.	.	LowGQX	.	GT	./.
chr1	57499214	.	C	.	.	LowGQX	END=57499257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57499258	.	A	.	.	LowGQX	.	GT	./.
chr1	57499259	.	G	.	.	LowGQX	END=57499270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57528537	.	T	.	.	LowGQX	END=57528636	GT	./.
chr1	57535016	.	G	.	.	LowGQX	END=57535056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57535057	.	G	.	.	LowGQX	.	GT	./.
chr1	57535058	.	G	.	.	LowGQX	END=57535076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57535077	.	G	.	.	LowGQX	.	GT	./.
chr1	57535078	.	T	.	.	LowGQX	END=57535115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57536644	.	C	.	.	LowGQX	END=57536656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	57536657	.	A	.	.	LowGQX	END=57536743	GT	./.
chr1	57537193	.	A	.	.	LowGQX	END=57537362	GT	./.
chr1	57537954	.	A	.	.	LowGQX	END=57538089	GT	./.
chr1	57602214	.	A	.	.	LowGQX	END=57602316	GT	./.
chr1	57610961	.	A	.	.	LowGQX	END=57611104	GT	./.
chr1	57756620	.	T	.	.	LowGQX	END=57756719	GT	./.
chr1	58521805	.	T	.	.	PASS	END=58521827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:46
chr1	58521828	.	G	.	.	PASS	END=58521855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:45
chr1	58521856	.	G	.	.	PASS	END=58521888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:43
chr1	58521889	.	A	.	.	PASS	END=58521995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:43
chr1	58521996	.	T	.	.	PASS	END=58522055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:56
chr1	58522056	.	C	.	.	PASS	END=58522139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:58
chr1	58522140	.	T	.	.	PASS	END=58522152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:58
chr1	58939543	.	T	.	.	LowGQX	END=58939642	GT	./.
chr1	58946635	.	A	.	.	LowGQX	END=58946848	GT	./.
chr1	58971730	.	A	.	.	LowGQX	END=58971883	GT	./.
chr1	58992921	.	T	.	.	LowGQX	END=58993020	GT	./.
chr1	58996271	.	A	.	.	LowGQX	END=58996403	GT	./.
chr1	58999563	.	G	.	.	LowGQX	END=58999626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	58999627	.	C	.	.	LowGQX	END=58999782	GT	./.
chr1	58999808	.	G	.	.	LowGQX	END=59000005	GT	./.
chr1	59002183	.	A	.	.	LowGQX	END=59002415	GT	./.
chr1	59004465	.	A	.	.	LowGQX	END=59004968	GT	./.
chr1	59041806	.	G	.	.	PASS	END=59041825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	59041826	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:69:60
chr1	59041827	.	C	.	.	PASS	END=59041830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	59041831	.	A	C	99.73	SB	BaseQRankSum=-1.665;DP=41;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=16.2410;MQ=60;MQ0=0;MQRankSum=-0.149;QD=2.43;ReadPosRankSum=2.422;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,15:41:99:130,0,341:60:99:0.366
chr1	59041832	.	C	.	.	PASS	END=59041835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	59041836	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:43:0:60
chr1	59041837	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:75:60
chr1	59041838	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:50:60
chr1	59041839	.	C	.	.	PASS	END=59041841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	59041842	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:69:60
chr1	59041843	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:99:60
chr1	59041844	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr1	59041845	.	C	.	.	PASS	END=59041856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr1	59041857	.	C	.	.	PASS	END=59041888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:81:60
chr1	59041889	.	G	.	.	PASS	END=59041905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	59041906	.	T	.	.	PASS	END=59041967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	59041968	.	G	.	.	PASS	END=59042027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	59042028	.	C	.	.	PASS	END=59042201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	59042202	.	C	.	.	PASS	END=59042249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	59042250	.	G	.	.	PASS	END=59042303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	59042304	.	C	.	.	PASS	END=59042401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	59042402	.	G	.	.	PASS	END=59042454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	59042455	.	C	.	.	PASS	END=59042567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	59042568	.	G	.	.	PASS	END=59042612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	59042613	.	C	.	.	PASS	END=59042632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	59042633	.	A	.	.	PASS	END=59042654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:91:60
chr1	59042655	.	C	.	.	PASS	END=59042672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	59042673	.	G	.	.	PASS	END=59042676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	59042677	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:48:60
chr1	59042678	.	C	.	.	PASS	END=59042679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	59042680	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:42:60
chr1	59042681	.	C	.	.	PASS	END=59042687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	59042688	.	G	.	.	PASS	END=59042689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:51:60
chr1	59042690	.	C	.	.	PASS	END=59042704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	59042705	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:51:60
chr1	59042706	.	C	.	.	PASS	END=59042707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	59042708	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:54:60
chr1	59042709	.	C	.	.	PASS	END=59042712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	59042713	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:51:60
chr1	59042714	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:39:60
chr1	59042715	.	G	.	.	PASS	END=59042716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	59042717	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:33:60
chr1	59042718	.	G	.	.	PASS	END=59042725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	59042726	.	T	.	.	PASS	END=59042727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	59042728	.	C	.	.	PASS	END=59042730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	59042731	.	T	.	.	PASS	END=59042732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:36:60
chr1	59042733	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:60:60
chr1	59042734	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:33:60
chr1	59042735	.	C	.	.	PASS	END=59042736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	59042737	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	59042738	.	G	.	.	PASS	END=59042746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	59042747	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:1:60
chr1	59042748	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:39:60
chr1	59042749	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:21:60
chr1	59042750	.	G	.	.	PASS	END=59042755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	59042756	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:18:60
chr1	59042757	.	C	.	.	PASS	END=59042778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	59042779	.	A	.	.	PASS	END=59042783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	59042784	.	C	.	.	PASS	END=59042786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	59042787	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:6:60
chr1	59042788	.	A	.	.	PASS	END=59042789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	59042790	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:9:60
chr1	59042791	.	C	.	.	PASS	END=59042798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	59042799	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:60
chr1	59042800	.	G	.	.	PASS	END=59042830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	59042831	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	59042832	.	G	.	.	PASS	END=59042833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	59042834	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	59042835	.	G	.	.	PASS	END=59042836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	59042837	.	G	.	.	LowGQX	END=59042864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	59042865	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	59042866	.	G	.	.	LowGQX	END=59042871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	59042872	.	C	.	.	LowGQX	END=59042877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	59042878	.	C	.	.	LowGQX	END=59042879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	59125667	.	A	.	.	LowGQX	END=59125829	GT	./.
chr1	59126821	.	A	.	.	LowGQX	END=59126920	GT	./.
chr1	59127076	.	A	.	.	LowGQX	END=59127185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	59131169	.	A	.	.	LowGQX	END=59131305	GT	./.
chr1	59132708	.	A	.	.	LowGQX	END=59132855	GT	./.
chr1	59132856	.	G	.	.	LowGQX	END=59132860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59132861	.	C	.	.	LowGQX	.	GT	./.
chr1	59132862	.	C	.	.	LowGQX	END=59132900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59133507	.	G	.	.	LowGQX	END=59133558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59133559	.	A	.	.	LowGQX	END=59133606	GT	./.
chr1	59134280	.	G	.	.	LowGQX	END=59134324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59134325	.	T	.	.	LowGQX	.	GT	./.
chr1	59134326	.	T	.	.	LowGQX	END=59134350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59134351	.	G	.	.	LowGQX	END=59134431	GT	./.
chr1	59134574	.	C	.	.	LowGQX	END=59134733	GT	./.
chr1	59137537	.	T	.	.	LowGQX	END=59137689	GT	./.
chr1	59139234	.	G	.	.	LowGQX	END=59139333	GT	./.
chr1	59141147	.	A	.	.	LowGQX	END=59141230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59141231	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	59141232	.	G	.	.	LowGQX	END=59141244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59141245	.	A	.	.	LowGQX	END=59141254	GT	./.
chr1	59142556	.	A	.	.	LowGQX	END=59142730	GT	./.
chr1	59147455	.	A	.	.	LowGQX	END=59147478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	59147479	.	T	.	.	LowGQX	.	GT	./.
chr1	59147480	.	A	.	.	LowGQX	END=59147484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	59147485	.	T	.	.	LowGQX	.	GT	./.
chr1	59147486	.	C	.	.	LowGQX	END=59147498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	59147499	.	G	.	.	LowGQX	END=59147500	GT	./.
chr1	59147501	.	T	.	.	LowGQX	END=59147532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	59147533	.	G	.	.	LowGQX	.	GT	./.
chr1	59147534	.	A	.	.	LowGQX	END=59147535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	59147536	.	T	.	.	LowGQX	.	GT	./.
chr1	59147537	.	T	.	.	LowGQX	END=59147541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	59147542	.	G	.	.	LowGQX	.	GT	./.
chr1	59147543	.	T	.	.	LowGQX	END=59147545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59147546	.	T	.	.	LowGQX	.	GT	./.
chr1	59147547	.	T	.	.	LowGQX	END=59147552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59147553	.	T	.	.	LowGQX	END=59147554	GT	./.
chr1	59147555	.	T	.	.	LowGQX	END=59147556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59147557	.	G	.	.	LowGQX	.	GT	./.
chr1	59147558	.	A	.	.	LowGQX	END=59147564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59147565	.	T	.	.	LowGQX	END=59147566	GT	./.
chr1	59147567	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59147568	.	C	.	.	LowGQX	END=59147569	GT	./.
chr1	59147570	.	A	.	.	LowGQX	END=59147576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59147577	.	T	.	.	LowGQX	.	GT	./.
chr1	59147578	.	C	.	.	LowGQX	END=59147580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59147581	.	T	.	.	LowGQX	END=59147582	GT	./.
chr1	59147583	.	T	.	.	LowGQX	END=59147605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59147606	.	T	.	.	LowGQX	END=59148219	GT	./.
chr1	59150823	.	A	.	.	LowGQX	END=59150835	GT	./.
chr1	59150836	.	A	.	.	LowGQX	END=59150840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59150841	.	T	.	.	LowGQX	.	GT	./.
chr1	59150842	.	G	.	.	LowGQX	END=59150925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59154648	.	T	.	.	LowGQX	END=59154799	GT	./.
chr1	59155782	.	T	.	.	LowGQX	END=59155937	GT	./.
chr1	59156001	.	A	.	.	LowGQX	END=59156100	GT	./.
chr1	59158519	.	T	.	.	LowGQX	END=59158618	GT	./.
chr1	59160791	.	A	.	.	LowGQX	END=59160890	GT	./.
chr1	59165641	.	G	.	.	LowGQX	END=59165740	GT	./.
chr1	59247745	.	C	.	.	PASS	END=59247789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	59247790	.	C	.	.	PASS	END=59247836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	59247837	.	C	.	.	PASS	END=59247909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	59247910	.	G	.	.	PASS	END=59247981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	59247982	.	T	.	.	PASS	END=59248059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	59248060	.	T	.	.	PASS	END=59248114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	59248115	.	G	.	.	PASS	END=59248181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	59248182	.	C	.	.	PASS	END=59248201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	59248202	.	G	.	.	PASS	END=59248297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	59248298	.	A	.	.	PASS	END=59248366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	59248367	.	T	.	.	PASS	END=59248417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	59248418	.	C	.	.	PASS	END=59248478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	59248479	.	G	.	.	PASS	END=59248591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	59248592	.	G	.	.	PASS	END=59248718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	59248719	.	G	.	.	PASS	END=59248744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	59250927	.	C	.	.	LowGQX	END=59251026	GT	./.
chr1	59359197	.	T	.	.	LowGQX	END=59359346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59359347	.	C	.	.	LowGQX	END=59359389	GT	./.
chr1	59364719	.	T	.	.	LowGQX	END=59364920	GT	./.
chr1	59364921	.	G	.	.	LowGQX	END=59364938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59364939	.	A	.	.	LowGQX	.	GT	./.
chr1	59364940	.	A	.	.	LowGQX	END=59364957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	59787221	.	A	.	.	LowGQX	END=59787422	GT	./.
chr1	59805629	.	G	.	.	LowGQX	END=59805741	GT	./.
chr1	59811918	.	G	.	.	LowGQX	END=59812072	GT	./.
chr1	59844416	.	G	.	.	LowGQX	END=59844515	GT	./.
chr1	59922631	.	A	.	.	LowGQX	END=59922750	GT	./.
chr1	59977981	.	A	.	.	LowGQX	END=59978113	GT	./.
chr1	60019794	.	A	.	.	LowGQX	END=60019901	GT	./.
chr1	60073473	.	A	.	.	LowGQX	END=60073540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60073541	.	T	.	.	LowGQX	.	GT	./.
chr1	60073542	.	T	.	.	LowGQX	END=60073584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60091642	.	A	.	.	LowGQX	END=60091741	GT	./.
chr1	60103898	.	A	.	.	LowGQX	END=60104049	GT	./.
chr1	60106938	.	C	.	.	LowGQX	END=60107037	GT	./.
chr1	60125879	.	T	.	.	LowGQX	END=60125978	GT	./.
chr1	60132903	.	A	.	.	LowGQX	END=60133027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60133028	.	G	.	.	LowGQX	.	GT	./.
chr1	60133029	.	C	.	.	LowGQX	END=60133047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60133048	.	T	.	.	LowGQX	.	GT	./.
chr1	60133049	.	T	.	.	LowGQX	END=60133059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60133060	.	C	.	.	LowGQX	END=60133069	GT	./.
chr1	60133070	.	T	.	.	LowGQX	END=60133077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60139709	.	A	.	.	LowGQX	END=60139808	GT	./.
chr1	60163275	.	T	.	.	LowGQX	END=60163374	GT	./.
chr1	60223584	.	G	.	.	LowGQX	END=60223683	GT	./.
chr1	60228166	.	C	.	.	LowGQX	END=60228224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60228225	.	A	.	.	LowGQX	.	GT	./.
chr1	60228226	.	G	.	.	LowGQX	END=60228257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60228258	.	C	.	.	LowGQX	END=60228265	GT	./.
chr1	60280712	.	T	.	.	LowGQX	END=60280871	GT	./.
chr1	60287523	.	A	.	.	LowGQX	END=60287556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60287557	.	T	.	.	LowGQX	END=60287676	GT	./.
chr1	60294439	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294440	.	T	.	.	LowGQX	.	GT	./.
chr1	60294441	.	T	.	.	LowGQX	END=60294443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294444	.	T	.	.	LowGQX	END=60294449	GT	./.
chr1	60294450	.	A	.	.	LowGQX	END=60294456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294457	.	C	.	.	LowGQX	.	GT	./.
chr1	60294458	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294459	.	G	.	.	LowGQX	END=60294462	GT	./.
chr1	60294463	.	G	.	.	LowGQX	END=60294465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294466	.	T	.	.	LowGQX	.	GT	./.
chr1	60294467	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294468	.	A	.	.	LowGQX	END=60294469	GT	./.
chr1	60294470	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294471	.	G	.	.	LowGQX	.	GT	./.
chr1	60294472	.	A	.	.	LowGQX	END=60294475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294476	.	T	.	.	LowGQX	.	GT	./.
chr1	60294477	.	T	.	.	LowGQX	END=60294480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294481	.	T	.	.	LowGQX	.	GT	./.
chr1	60294482	.	A	.	.	LowGQX	END=60294485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294486	.	C	.	.	LowGQX	.	GT	./.
chr1	60294487	.	G	.	.	LowGQX	END=60294488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294489	.	A	.	.	LowGQX	.	GT	./.
chr1	60294490	.	T	.	.	LowGQX	END=60294491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294492	.	A	.	.	LowGQX	END=60294493	GT	./.
chr1	60294494	.	A	.	.	LowGQX	END=60294498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294499	.	A	.	.	LowGQX	END=60294500	GT	./.
chr1	60294501	.	G	.	.	LowGQX	END=60294504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294505	.	G	.	.	LowGQX	.	GT	./.
chr1	60294506	.	G	.	.	LowGQX	END=60294511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294512	.	C	.	.	LowGQX	END=60294513	GT	./.
chr1	60294514	.	G	.	.	LowGQX	END=60294518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294519	.	A	.	.	LowGQX	.	GT	./.
chr1	60294520	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294521	.	A	.	.	LowGQX	.	GT	./.
chr1	60294522	.	A	.	.	LowGQX	END=60294523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294524	.	G	.	.	LowGQX	.	GT	./.
chr1	60294525	.	G	.	.	LowGQX	END=60294527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294528	.	T	.	.	LowGQX	.	GT	./.
chr1	60294529	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60294530	.	C	.	.	LowGQX	END=60294538	GT	./.
chr1	60297811	.	A	.	.	LowGQX	END=60297962	GT	./.
chr1	60299075	.	A	.	.	LowGQX	END=60299211	GT	./.
chr1	60300945	.	T	.	.	LowGQX	END=60301100	GT	./.
chr1	60302527	.	A	.	.	LowGQX	END=60302626	GT	./.
chr1	60305972	.	T	.	.	LowGQX	END=60306071	GT	./.
chr1	60309102	.	A	.	.	LowGQX	END=60309272	GT	./.
chr1	60312715	.	A	.	.	LowGQX	END=60312894	GT	./.
chr1	60313985	.	A	.	.	LowGQX	END=60314190	GT	./.
chr1	60314743	.	A	.	.	LowGQX	END=60314857	GT	./.
chr1	60324094	.	T	.	.	LowGQX	END=60324193	GT	./.
chr1	60324578	.	A	.	.	LowGQX	END=60324737	GT	./.
chr1	60325858	.	A	.	.	LowGQX	END=60325999	GT	./.
chr1	60326000	.	G	.	.	LowGQX	END=60326002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60328453	.	T	.	.	LowGQX	END=60328552	GT	./.
chr1	60330212	.	A	.	.	LowGQX	END=60330371	GT	./.
chr1	60330827	.	C	.	.	LowGQX	END=60330926	GT	./.
chr1	60331542	.	A	.	.	LowGQX	END=60331701	GT	./.
chr1	60333920	.	A	.	.	LowGQX	END=60334079	GT	./.
chr1	60336699	.	A	.	.	LowGQX	END=60336798	GT	./.
chr1	60338465	.	A	.	.	LowGQX	END=60338607	GT	./.
chr1	60338608	.	G	.	.	LowGQX	END=60338639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60359321	.	T	.	.	PASS	END=60359333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	60359334	.	G	.	.	PASS	END=60359346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	60359347	.	G	.	.	PASS	END=60359475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	60359476	.	C	.	.	PASS	END=60359500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	60359501	.	C	.	.	PASS	END=60359503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	60366635	.	A	.	.	PASS	END=60366736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	60366737	.	C	.	.	PASS	END=60366760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	60366761	.	C	.	.	PASS	END=60366777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	60370530	.	T	.	.	PASS	END=60370565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	60370566	.	A	.	.	PASS	END=60370690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	60370691	.	C	.	.	PASS	END=60370712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	60370713	.	T	.	.	PASS	END=60370740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	60373456	.	A	.	.	PASS	END=60373482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	60373483	.	A	.	.	PASS	END=60373491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	60373492	.	A	.	.	PASS	END=60373493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:69:60
chr1	60373494	.	C	.	.	PASS	END=60373540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	60373541	.	T	.	.	PASS	END=60373579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	60373580	.	G	.	.	PASS	END=60373601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	60375454	.	A	.	.	PASS	END=60375520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	60375521	.	T	.	.	PASS	END=60375576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	60375577	.	A	.	.	PASS	END=60375620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	60375621	.	G	.	.	PASS	END=60375632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	60375633	.	C	.	.	PASS	END=60375663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	60377278	.	A	.	.	PASS	END=60377295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	60377296	.	G	.	.	PASS	END=60377314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	60377315	.	C	.	.	PASS	END=60377376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	60377377	.	G	.	.	PASS	END=60377442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr1	60377832	.	A	.	.	PASS	END=60377872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	60377873	.	C	.	.	PASS	END=60377965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	60377966	.	C	.	.	PASS	END=60377985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	60381608	.	A	.	.	PASS	END=60381647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	60381648	.	G	.	.	PASS	END=60381694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	60381695	.	T	.	.	PASS	END=60381774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr1	60392207	.	A	.	.	PASS	END=60392236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	60392237	.	A	.	.	PASS	END=60392343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	60392344	.	A	.	.	PASS	END=60392402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	60392403	.	C	.	.	PASS	END=60392420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	60456343	.	T	.	.	LowGQX	END=60456507	GT	./.
chr1	60463279	.	A	.	.	LowGQX	END=60463490	GT	./.
chr1	60466679	.	C	.	.	LowGQX	END=60466838	GT	./.
chr1	60474317	.	C	.	.	LowGQX	END=60474364	GT	./.
chr1	60474365	.	G	.	.	LowGQX	END=60474416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60476047	.	A	.	.	LowGQX	END=60476130	GT	./.
chr1	60476131	.	G	.	.	LowGQX	END=60476146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60491071	.	A	.	.	LowGQX	END=60491104	GT	./.
chr1	60491105	.	G	.	.	LowGQX	END=60491149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60491150	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	60491151	.	T	.	.	LowGQX	END=60491172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60499146	.	A	.	.	LowGQX	END=60499315	GT	./.
chr1	60503662	.	A	.	.	LowGQX	END=60503781	GT	./.
chr1	60505587	.	A	.	.	LowGQX	END=60505854	GT	./.
chr1	60506661	.	A	.	.	LowGQX	END=60506680	GT	./.
chr1	60506681	.	G	.	.	LowGQX	END=60506699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60506700	.	A	.	.	LowGQX	.	GT	./.
chr1	60506701	.	A	.	.	LowGQX	END=60506714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60506715	.	A	.	.	LowGQX	.	GT	./.
chr1	60506716	.	G	.	.	LowGQX	END=60506735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60506736	.	T	.	.	LowGQX	END=60506737	GT	./.
chr1	60506738	.	C	.	.	LowGQX	END=60506752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60506753	.	C	.	.	LowGQX	.	GT	./.
chr1	60506754	.	T	.	.	LowGQX	END=60506761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	60506762	.	G	.	.	LowGQX	.	GT	./.
chr1	60506763	.	G	.	.	LowGQX	END=60506766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	60506767	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	60506768	.	T	.	.	LowGQX	END=60506799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	60506800	.	G	.	.	LowGQX	.	GT	./.
chr1	60506801	.	A	.	.	LowGQX	END=60506805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	60520874	.	A	.	.	LowGQX	END=60521041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60521042	.	C	.	.	LowGQX	.	GT	./.
chr1	60521043	.	T	.	.	LowGQX	END=60521052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60521053	.	A	.	.	LowGQX	.	GT	./.
chr1	60521054	.	G	.	.	LowGQX	END=60521081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	60521082	.	T	.	.	LowGQX	END=60521112	GT	./.
chr1	60538207	.	A	.	.	LowGQX	END=60538317	GT	./.
chr1	61331041	.	A	.	.	LowGQX	END=61331091	GT	./.
chr1	61331092	.	T	.	.	LowGQX	END=61331140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	61543249	.	A	.	.	PASS	END=61543270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	61543271	.	T	.	.	PASS	END=61543281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	61543282	.	C	.	.	PASS	END=61543289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	61543290	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:51:60
chr1	61543291	.	C	.	.	PASS	END=61543331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	61543332	.	C	.	.	PASS	END=61543348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	61547558	.	T	.	.	PASS	END=61547666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	61547667	.	T	.	.	PASS	END=61547682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	61547683	.	G	.	.	PASS	END=61547704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	61547705	.	A	.	.	PASS	END=61547713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	61547714	.	A	.	.	PASS	END=61547718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	61547719	.	G	.	.	PASS	END=61547727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	61547728	.	A	.	.	PASS	END=61547730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	61547731	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:2:60
chr1	61547732	.	C	.	.	PASS	END=61547737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	61547738	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	61547739	.	G	.	.	PASS	END=61547743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:60
chr1	61547744	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	61547745	.	G	.	.	PASS	END=61547750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	61547751	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	61547752	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:0:60
chr1	61547753	.	G	.	.	PASS	END=61547756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:48:60
chr1	61547757	.	A	.	.	PASS	END=61547774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	61548413	.	C	.	.	PASS	END=61548432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	61548433	.	A	.	.	PASS	END=61548437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:72:60
chr1	61548438	.	C	.	.	PASS	END=61548439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:75:60
chr1	61548440	.	C	.	.	PASS	END=61548449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	61548450	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:75:60
chr1	61548451	.	G	.	.	PASS	END=61548474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	61548475	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:57:60
chr1	61548476	.	C	.	.	PASS	END=61548485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	61548486	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:57:60
chr1	61548487	.	C	.	.	PASS	END=61548493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	61548494	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:69:60
chr1	61548495	.	G	.	.	PASS	END=61548503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	61548504	.	T	.	.	PASS	END=61548512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	61553819	.	A	.	.	PASS	END=61553847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	61553848	.	C	.	.	PASS	END=61553860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	61553861	.	T	.	.	PASS	END=61553881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	61553882	.	G	.	.	PASS	END=61553950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	61553951	.	A	.	.	PASS	END=61553994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	61553995	.	A	.	.	PASS	END=61554047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	61554048	.	C	T	1699.36	PASS	BaseQRankSum=2.281;DP=132;Dels=0.00;FS=1.450;HRun=0;HaplotypeScore=11.4158;MQ=60;MQ0=0;MQRankSum=0.359;QD=12.87;ReadPosRankSum=-0.933;SB=-675.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:69,61:132:99:1729,0,1906:60:99:0.469
chr1	61554049	.	G	.	.	PASS	END=61554184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	61554185	.	T	.	.	PASS	END=61554338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	61554339	.	T	.	.	PASS	END=61554354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	61743175	.	A	.	.	PASS	END=61743201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	61743202	.	A	.	.	PASS	END=61743255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	61743256	.	T	.	.	PASS	END=61743274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr1	61798172	.	T	.	.	PASS	END=61798234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:94:60
chr1	61798235	.	C	.	.	PASS	END=61798255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	61798256	.	A	.	.	PASS	END=61798266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	61798267	.	A	.	.	PASS	END=61798271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	61818120	.	A	.	.	PASS	END=61818182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	61818183	.	C	.	.	PASS	END=61818199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	61818200	.	G	.	.	PASS	END=61818220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	61818221	.	C	.	.	PASS	END=61818224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	61818225	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:56:60
chr1	61818226	.	A	.	.	PASS	END=61818230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	61818231	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:30:60
chr1	61818232	.	T	.	.	PASS	END=61818248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	61818249	.	T	.	.	PASS	END=61818283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	61818284	.	C	.	.	PASS	END=61818289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	61824817	.	A	.	.	PASS	END=61824840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	61824841	.	G	.	.	PASS	END=61824860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	61824861	.	T	.	.	PASS	END=61824908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	61824909	.	T	.	.	PASS	END=61824948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	61848907	.	A	.	.	PASS	END=61848925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	61848926	.	A	.	.	PASS	END=61849038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	61849039	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:99:60
chr1	61869757	.	A	.	.	PASS	END=61869782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	61869783	.	G	A	1363.87	PASS	BaseQRankSum=1.618;DP=134;Dels=0.00;FS=1.555;HRun=0;HaplotypeScore=14.4119;MQ=60;MQ0=0;MQRankSum=-0.007;QD=10.18;ReadPosRankSum=0.511;SB=-606.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:67,66:134:99:1394,0,1466:60:99:0.496
chr1	61869784	.	C	.	.	PASS	END=61869800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	61869801	.	T	.	.	PASS	END=61869907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	61869908	.	T	.	.	PASS	END=61869935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	61869936	.	A	.	.	PASS	END=61869956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	61872202	.	A	.	.	PASS	END=61872212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	61872213	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:48:60
chr1	61872214	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:18:60
chr1	61872215	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:33:60
chr1	61872216	.	C	.	10.70	LowGQX	DP=12;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:9:0.05:60:0
chr1	61872217	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	61872218	.	C	.	.	PASS	END=61872219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	61872220	.	C	.	.	PASS	END=61872222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	61872223	.	C	.	.	PASS	END=61872227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	61872228	.	C	.	.	PASS	END=61872229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	61872230	.	A	.	.	PASS	END=61872232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	61872233	.	G	.	.	PASS	END=61872245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	61872246	.	A	.	.	PASS	END=61872253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	61872254	.	C	.	.	PASS	END=61872257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	61872258	.	G	.	.	PASS	END=61872265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	61872266	.	C	.	.	PASS	END=61872308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	61872309	.	C	.	.	PASS	END=61872343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	61872344	.	C	.	.	PASS	END=61872395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	61872396	.	C	.	.	PASS	END=61872401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	61892133	.	A	.	.	PASS	END=61892136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	61892137	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:70:60
chr1	61892138	.	C	.	.	PASS	END=61892178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:87:60
chr1	61892179	.	G	.	.	PASS	END=61892223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	61892224	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:75:51:60
chr1	61892225	.	A	.	.	PASS	END=61892232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	61920913	.	C	.	.	PASS	END=61921024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	61921025	.	C	.	.	PASS	END=61921044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	61921045	.	T	.	.	PASS	END=61921063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	62149107	.	T	.	.	LowGQX	END=62149266	GT	./.
chr1	62160347	.	C	.	.	LowGQX	END=62160446	GT	./.
chr1	62165824	.	C	.	.	LowGQX	END=62165946	GT	./.
chr1	62166602	.	G	.	.	LowGQX	END=62166701	GT	./.
chr1	62175000	.	C	.	.	LowGQX	END=62175158	GT	./.
chr1	62189372	.	C	.	.	LowGQX	END=62189471	GT	./.
chr1	62190624	.	G	.	.	LowGQX	END=62190978	GT	./.
chr1	62228526	.	T	.	.	LowGQX	END=62228625	GT	./.
chr1	62228683	.	A	.	.	LowGQX	END=62228853	GT	./.
chr1	62231939	.	T	.	.	LowGQX	END=62232070	GT	./.
chr1	62232071	.	G	.	.	LowGQX	END=62232129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62232130	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	62232131	.	C	.	.	LowGQX	END=62232147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62234953	.	A	.	.	LowGQX	END=62235096	GT	./.
chr1	62237101	.	A	.	.	LowGQX	END=62237300	GT	./.
chr1	62240876	.	A	.	.	LowGQX	END=62240888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62240889	.	C	.	.	LowGQX	.	GT	./.
chr1	62240890	.	C	.	.	LowGQX	END=62240934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62240935	.	T	.	.	LowGQX	.	GT	./.
chr1	62240936	.	T	.	.	LowGQX	END=62240939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62240940	.	A	.	.	LowGQX	.	GT	./.
chr1	62240941	.	A	.	.	LowGQX	END=62240954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62240955	.	A	.	.	LowGQX	.	GT	./.
chr1	62240956	.	A	.	.	LowGQX	END=62241001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62241002	.	A	.	.	LowGQX	.	GT	./.
chr1	62241003	.	T	.	.	LowGQX	END=62241008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62253424	.	A	.	.	LowGQX	END=62253433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62253434	.	A	.	.	LowGQX	.	GT	./.
chr1	62253435	.	C	.	.	LowGQX	END=62253436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62253437	.	C	.	.	LowGQX	.	GT	./.
chr1	62253438	.	C	.	.	LowGQX	END=62253439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62253440	.	G	.	.	LowGQX	END=62253441	GT	./.
chr1	62253442	.	C	.	.	LowGQX	END=62253462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62253463	.	T	.	.	LowGQX	.	GT	./.
chr1	62253464	.	T	.	.	LowGQX	END=62253467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62253468	.	G	.	.	LowGQX	.	GT	./.
chr1	62253469	.	G	.	.	LowGQX	END=62253481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62253482	.	G	.	.	LowGQX	.	GT	./.
chr1	62253483	.	G	.	.	LowGQX	END=62253575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62253576	.	G	.	.	LowGQX	.	GT	./.
chr1	62253577	.	T	.	.	LowGQX	END=62253600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62253601	.	T	.	.	LowGQX	.	GT	./.
chr1	62253602	.	A	.	.	LowGQX	END=62253631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62253632	.	G	.	.	LowGQX	END=62253646	GT	./.
chr1	62257018	.	A	.	.	LowGQX	END=62257085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62257086	.	A	.	.	LowGQX	.	GT	./.
chr1	62257087	.	G	.	.	LowGQX	END=62257121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62261135	.	T	.	.	LowGQX	END=62261234	GT	./.
chr1	62262957	.	A	.	.	LowGQX	END=62262959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62262960	.	T	.	.	LowGQX	.	GT	./.
chr1	62262961	.	C	.	.	LowGQX	END=62262982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62262983	.	T	.	.	LowGQX	.	GT	./.
chr1	62262984	.	T	.	.	LowGQX	END=62263025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62263026	.	A	.	.	LowGQX	END=62263061	GT	./.
chr1	62263062	.	C	.	.	LowGQX	END=62263102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62267293	.	A	.	.	LowGQX	END=62267309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62267310	.	C	.	.	LowGQX	END=62267443	GT	./.
chr1	62271109	.	T	.	.	LowGQX	END=62271208	GT	./.
chr1	62274074	.	T	.	.	LowGQX	END=62274137	GT	./.
chr1	62274138	.	A	.	.	LowGQX	END=62274158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62274159	.	A	.	.	LowGQX	.	GT	./.
chr1	62274160	.	C	.	.	LowGQX	END=62274224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62288615	.	A	.	.	LowGQX	END=62288753	GT	./.
chr1	62293092	.	A	.	.	LowGQX	END=62293257	GT	./.
chr1	62299324	.	A	.	.	LowGQX	END=62299459	GT	./.
chr1	62321700	.	A	.	.	LowGQX	END=62321701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62321702	.	G	.	.	LowGQX	.	GT	./.
chr1	62321703	.	A	.	.	LowGQX	END=62321704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62321705	.	C	.	.	LowGQX	.	GT	./.
chr1	62321706	.	C	.	.	LowGQX	END=62321710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62321711	.	G	.	.	LowGQX	.	GT	./.
chr1	62321712	.	A	.	.	LowGQX	END=62321737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62321738	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	62321739	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	62321740	.	C	.	.	LowGQX	END=62321747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62321748	.	T	.	.	LowGQX	.	GT	./.
chr1	62321749	.	A	.	.	LowGQX	END=62321764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62321765	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	62321766	.	A	.	.	LowGQX	.	GT	./.
chr1	62321767	.	A	.	.	LowGQX	END=62321774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62321775	.	G	.	.	LowGQX	END=62321778	GT	./.
chr1	62321779	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62321780	.	C	.	.	LowGQX	.	GT	./.
chr1	62321781	.	T	.	.	LowGQX	END=62321786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62321787	.	C	.	.	LowGQX	.	GT	./.
chr1	62321788	.	T	.	.	LowGQX	END=62321789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62321790	.	G	.	.	LowGQX	.	GT	./.
chr1	62321791	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62321792	.	G	.	.	LowGQX	.	GT	./.
chr1	62321793	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62321794	.	C	.	.	LowGQX	.	GT	./.
chr1	62321795	.	C	.	.	LowGQX	END=62321809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62321810	.	A	.	.	LowGQX	END=62321817	GT	./.
chr1	62321818	.	C	.	.	LowGQX	END=62321913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62327151	.	T	.	.	LowGQX	END=62327341	GT	./.
chr1	62329908	.	A	.	.	LowGQX	END=62329909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62329910	.	G	.	.	LowGQX	.	GT	./.
chr1	62329911	.	G	.	.	LowGQX	END=62329912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62329913	.	T	.	.	LowGQX	.	GT	./.
chr1	62329914	.	T	.	.	LowGQX	END=62329951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62329952	.	G	.	.	LowGQX	.	GT	./.
chr1	62329953	.	A	.	.	LowGQX	END=62329978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62329979	.	T	.	.	LowGQX	.	GT	./.
chr1	62329980	.	T	.	.	LowGQX	END=62330025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62330026	.	G	.	.	LowGQX	END=62330307	GT	./.
chr1	62340913	.	A	.	.	LowGQX	END=62340915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62340916	.	T	.	.	LowGQX	END=62340918	GT	./.
chr1	62340919	.	A	.	.	LowGQX	END=62340926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62340927	.	T	.	.	LowGQX	END=62340928	GT	./.
chr1	62340929	.	T	.	.	LowGQX	END=62340930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62340931	.	T	.	.	LowGQX	END=62340932	GT	./.
chr1	62340933	.	A	.	.	LowGQX	END=62340935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62340936	.	G	.	.	LowGQX	.	GT	./.
chr1	62340937	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62340938	.	G	.	.	LowGQX	.	GT	./.
chr1	62340939	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62340940	.	C	.	.	LowGQX	.	GT	./.
chr1	62340941	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62340942	.	C	.	.	LowGQX	.	GT	./.
chr1	62340943	.	T	.	.	LowGQX	END=62340945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62340946	.	C	.	.	LowGQX	.	GT	./.
chr1	62340947	.	A	.	.	LowGQX	END=62340950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62340951	.	G	.	.	LowGQX	END=62340953	GT	./.
chr1	62340954	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62340955	.	C	.	.	LowGQX	.	GT	./.
chr1	62340956	.	A	.	.	LowGQX	END=62340962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62340963	.	G	.	.	LowGQX	.	GT	./.
chr1	62340964	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62340965	.	A	.	.	LowGQX	END=62340967	GT	./.
chr1	62340968	.	A	.	.	LowGQX	END=62340973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62340974	.	T	.	.	LowGQX	.	GT	./.
chr1	62340975	.	C	.	.	LowGQX	END=62340978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62340979	.	A	.	.	LowGQX	.	GT	./.
chr1	62340980	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62340981	.	G	.	.	LowGQX	END=62340982	GT	./.
chr1	62340983	.	C	.	.	LowGQX	END=62340984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62340985	.	G	.	.	LowGQX	.	GT	./.
chr1	62340986	.	A	.	.	LowGQX	END=62340989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62340990	.	G	.	.	LowGQX	.	GT	./.
chr1	62340991	.	A	.	.	LowGQX	END=62340997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62340998	.	G	.	.	LowGQX	END=62340999	GT	./.
chr1	62341000	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62341001	.	A	.	.	LowGQX	.	GT	./.
chr1	62341002	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62341003	.	A	.	.	LowGQX	END=62341010	GT	./.
chr1	62341011	.	T	.	.	LowGQX	END=62341012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62341013	.	A	.	.	LowGQX	.	GT	./.
chr1	62341014	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62341015	.	T	.	.	LowGQX	.	GT	./.
chr1	62341016	.	A	.	.	LowGQX	END=62341017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62341018	.	C	.	.	LowGQX	.	GT	./.
chr1	62341019	.	A	.	.	LowGQX	END=62341024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62341025	.	T	.	.	LowGQX	.	GT	./.
chr1	62341026	.	A	.	.	LowGQX	END=62341030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62341031	.	G	.	.	LowGQX	.	GT	./.
chr1	62341032	.	G	.	.	LowGQX	END=62341033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62341034	.	T	.	.	LowGQX	.	GT	./.
chr1	62341035	.	T	.	.	LowGQX	END=62341037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62341038	.	G	.	.	LowGQX	.	GT	./.
chr1	62341039	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62341040	.	T	.	.	LowGQX	.	GT	./.
chr1	62349907	.	A	.	.	LowGQX	END=62349932	GT	./.
chr1	62349933	.	G	.	.	LowGQX	END=62349952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62349953	.	C	.	.	LowGQX	.	GT	./.
chr1	62349954	.	T	.	.	LowGQX	END=62349955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62349956	.	C	.	.	LowGQX	.	GT	./.
chr1	62349957	.	C	.	.	LowGQX	END=62349970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62349971	.	A	.	.	LowGQX	.	GT	./.
chr1	62349972	.	G	.	.	LowGQX	END=62350014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62350015	.	A	.	.	LowGQX	.	GT	./.
chr1	62350016	.	C	.	.	LowGQX	END=62350082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62365241	.	T	.	.	LowGQX	END=62365340	GT	./.
chr1	62366952	.	A	.	.	LowGQX	END=62367151	GT	./.
chr1	62373992	.	T	.	.	LowGQX	END=62374156	GT	./.
chr1	62380248	.	T	.	.	LowGQX	END=62380347	GT	./.
chr1	62393400	.	A	.	.	LowGQX	END=62393503	GT	./.
chr1	62418023	.	A	.	.	LowGQX	END=62418122	GT	./.
chr1	62455828	.	T	.	.	LowGQX	END=62455837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62455838	.	A	.	.	LowGQX	END=62455887	GT	./.
chr1	62455888	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62455889	.	T	.	.	LowGQX	END=62455890	GT	./.
chr1	62455891	.	A	.	.	LowGQX	END=62455896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62455897	.	A	.	.	LowGQX	.	GT	./.
chr1	62455898	.	A	.	.	LowGQX	END=62455907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62455908	.	A	.	.	LowGQX	.	GT	./.
chr1	62455909	.	A	.	.	LowGQX	END=62455920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62455921	.	T	.	.	LowGQX	.	GT	./.
chr1	62455922	.	C	.	.	LowGQX	END=62455943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62455944	.	C	.	.	LowGQX	.	GT	./.
chr1	62455945	.	G	.	.	LowGQX	END=62455953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62455954	.	T	.	.	LowGQX	.	GT	./.
chr1	62455955	.	G	.	.	LowGQX	END=62455957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62455958	.	C	.	.	LowGQX	END=62455959	GT	./.
chr1	62455960	.	T	.	.	LowGQX	END=62455970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62455971	.	G	.	.	LowGQX	.	GT	./.
chr1	62455972	.	G	.	.	LowGQX	END=62455976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62455977	.	A	.	.	LowGQX	END=62455978	GT	./.
chr1	62455979	.	C	.	.	LowGQX	END=62455986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62455987	.	G	.	.	LowGQX	.	GT	./.
chr1	62455988	.	A	.	.	LowGQX	END=62455991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62455992	.	G	.	.	LowGQX	.	GT	./.
chr1	62455993	.	C	.	.	LowGQX	END=62455997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62455998	.	G	.	.	LowGQX	.	GT	./.
chr1	62455999	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62456000	.	A	.	.	LowGQX	.	GT	./.
chr1	62456001	.	G	.	.	LowGQX	END=62456003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62456004	.	G	.	.	LowGQX	.	GT	./.
chr1	62456005	.	G	.	.	LowGQX	END=62456007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62456008	.	G	.	.	LowGQX	.	GT	./.
chr1	62456009	.	A	.	.	LowGQX	END=62456013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62456014	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	62456015	.	T	.	.	LowGQX	END=62456021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62456022	.	G	.	.	LowGQX	.	GT	./.
chr1	62456023	.	A	.	.	LowGQX	END=62456037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62456038	.	T	.	.	LowGQX	.	GT	./.
chr1	62483524	.	A	.	.	LowGQX	END=62483623	GT	./.
chr1	62503636	.	T	.	.	LowGQX	END=62503735	GT	./.
chr1	62516635	.	T	.	.	LowGQX	END=62516734	GT	./.
chr1	62519961	.	G	.	.	LowGQX	END=62519967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62519968	.	G	.	.	LowGQX	END=62519969	GT	./.
chr1	62519970	.	G	.	.	LowGQX	END=62519986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62519987	.	A	.	.	LowGQX	.	GT	./.
chr1	62519988	.	T	.	.	LowGQX	END=62519989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62519990	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	62519991	.	T	.	.	LowGQX	.	GT	./.
chr1	62519992	.	G	.	.	LowGQX	END=62520001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62520002	.	T	.	.	LowGQX	.	GT	./.
chr1	62520003	.	C	.	.	LowGQX	END=62520004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62520005	.	A	.	.	LowGQX	.	GT	./.
chr1	62520006	.	G	.	.	LowGQX	END=62520012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62520013	.	T	.	.	LowGQX	END=62520015	GT	./.
chr1	62520016	.	C	.	.	LowGQX	END=62520060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62545120	.	A	.	.	LowGQX	END=62545241	GT	./.
chr1	62550185	.	A	.	.	LowGQX	END=62550205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	62550206	.	G	T	9.30	LowGQX	BaseQRankSum=1.026;DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.000;QD=2.32;ReadPosRankSum=1.026;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:38.74:39,0,39:60:9:0.500
chr1	62550207	.	T	.	.	LowGQX	END=62550275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62550276	.	T	.	.	LowGQX	.	GT	./.
chr1	62550277	.	C	.	.	LowGQX	END=62550345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62550346	.	C	.	.	LowGQX	.	GT	./.
chr1	62550347	.	C	.	.	LowGQX	END=62550355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62550356	.	A	.	.	LowGQX	.	GT	./.
chr1	62550357	.	G	.	.	LowGQX	END=62550364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62565986	.	C	.	.	LowGQX	END=62566003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62566004	.	G	.	.	LowGQX	.	GT	./.
chr1	62566005	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62566006	.	A	.	.	LowGQX	END=62566055	GT	./.
chr1	62566056	.	T	.	.	LowGQX	END=62566058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62566059	.	T	.	.	LowGQX	.	GT	./.
chr1	62566060	.	G	.	.	LowGQX	END=62566076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62566077	.	G	.	.	LowGQX	.	GT	./.
chr1	62566078	.	C	.	.	LowGQX	END=62566081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62566082	.	T	.	.	LowGQX	.	GT	./.
chr1	62566083	.	G	.	.	LowGQX	END=62566085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62574101	.	T	.	.	LowGQX	END=62574200	GT	./.
chr1	62579713	.	C	.	.	LowGQX	END=62579922	GT	./.
chr1	62582152	.	G	.	.	LowGQX	END=62582353	GT	./.
chr1	62582802	.	A	.	.	LowGQX	END=62582867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62582868	.	G	.	.	LowGQX	.	GT	./.
chr1	62582869	.	G	.	.	LowGQX	END=62582917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62586851	.	A	.	.	LowGQX	END=62586861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62586862	.	C	.	.	LowGQX	.	GT	./.
chr1	62586863	.	A	.	.	LowGQX	END=62586867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62586868	.	G	.	.	LowGQX	.	GT	./.
chr1	62586869	.	C	.	.	LowGQX	END=62586905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62586906	.	C	.	.	LowGQX	.	GT	./.
chr1	62586907	.	A	.	.	LowGQX	END=62586910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62586911	.	G	.	.	LowGQX	END=62586912	GT	./.
chr1	62586913	.	C	.	.	LowGQX	END=62586915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62586916	.	C	.	.	LowGQX	.	GT	./.
chr1	62586917	.	A	.	.	LowGQX	END=62586934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62586935	.	A	.	.	LowGQX	.	GT	./.
chr1	62586936	.	A	.	.	LowGQX	END=62586969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62588662	.	T	.	.	LowGQX	END=62588761	GT	./.
chr1	62593642	.	A	.	.	LowGQX	END=62593644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62593645	.	A	.	.	LowGQX	.	GT	./.
chr1	62593646	.	G	.	.	LowGQX	END=62593649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62593650	.	A	.	.	LowGQX	.	GT	./.
chr1	62593651	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62593652	.	T	.	.	LowGQX	.	GT	./.
chr1	62593653	.	G	.	.	LowGQX	END=62593678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62593679	.	A	.	.	LowGQX	.	GT	./.
chr1	62593680	.	G	.	.	LowGQX	END=62593685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62593686	.	G	.	.	LowGQX	.	GT	./.
chr1	62593687	.	G	.	.	LowGQX	END=62593695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62593696	.	T	.	.	LowGQX	.	GT	./.
chr1	62593697	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62593698	.	G	.	.	LowGQX	.	GT	./.
chr1	62593699	.	G	.	.	LowGQX	END=62593768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62594511	.	A	.	.	LowGQX	END=62594619	GT	./.
chr1	62613954	.	A	.	.	LowGQX	END=62614064	GT	./.
chr1	62626544	.	T	.	.	LowGQX	END=62626643	GT	./.
chr1	62628524	.	C	.	.	LowGQX	END=62628646	GT	./.
chr1	62628647	.	G	.	.	LowGQX	END=62628654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62628655	.	G	.	.	LowGQX	.	GT	./.
chr1	62628656	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62628657	.	C	.	.	LowGQX	.	GT	./.
chr1	62628658	.	A	.	.	LowGQX	END=62628675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62644071	.	G	.	.	LowGQX	END=62644170	GT	./.
chr1	62672299	.	C	.	.	LowGQX	END=62673310	GT	./.
chr1	62675453	.	A	.	.	LowGQX	END=62675862	GT	./.
chr1	62675863	.	G	.	.	LowGQX	END=62675891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62675892	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	62675893	.	G	.	.	LowGQX	END=62675899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62675900	.	A	.	.	LowGQX	END=62675901	GT	./.
chr1	62675902	.	A	.	.	LowGQX	END=62675935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62675936	.	T	.	.	LowGQX	.	GT	./.
chr1	62675937	.	G	.	.	LowGQX	END=62675943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62675944	.	A	.	.	LowGQX	.	GT	./.
chr1	62675945	.	A	.	.	LowGQX	END=62675947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62675948	.	A	.	.	LowGQX	.	GT	./.
chr1	62675949	.	A	.	.	LowGQX	END=62675950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62675951	.	C	.	.	LowGQX	.	GT	./.
chr1	62675952	.	C	.	.	LowGQX	END=62676014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62676015	.	G	.	.	LowGQX	.	GT	./.
chr1	62676016	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62676017	.	T	.	.	LowGQX	.	GT	./.
chr1	62676018	.	G	.	.	LowGQX	END=62676019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62676020	.	A	.	.	LowGQX	END=62676021	GT	./.
chr1	62676022	.	C	.	.	LowGQX	END=62676028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62676029	.	T	.	.	LowGQX	.	GT	./.
chr1	62676030	.	G	.	.	LowGQX	END=62676031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62676032	.	T	.	.	LowGQX	.	GT	./.
chr1	62676033	.	G	.	.	LowGQX	END=62676041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62676042	.	C	.	.	LowGQX	.	GT	./.
chr1	62676043	.	C	.	.	LowGQX	END=62676077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62676078	.	A	.	.	LowGQX	.	GT	./.
chr1	62676079	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62676080	.	G	.	.	LowGQX	.	GT	./.
chr1	62676081	.	A	.	.	LowGQX	END=62676082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62676083	.	C	.	.	LowGQX	.	GT	./.
chr1	62676084	.	T	.	.	LowGQX	END=62676103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62676104	.	T	.	.	LowGQX	END=62677046	GT	./.
chr1	62703947	.	C	.	.	LowGQX	END=62704055	GT	./.
chr1	62713142	.	A	.	.	LowGQX	END=62713346	GT	./.
chr1	62718697	.	C	.	.	LowGQX	END=62718883	GT	./.
chr1	62728692	.	T	.	.	LowGQX	END=62728783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	62728784	.	A	G	82.72	LowGQ;LowGQX;SB	DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=27.57;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:9.03:115,9,0:60:9:1.000
chr1	62728785	.	C	.	.	LowGQX	END=62728824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	62728825	.	C	.	.	LowGQX	END=62728837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62728838	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	62728839	.	G	.	.	LowGQX	END=62728858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62728859	.	A	.	.	LowGQX	END=62729051	GT	./.
chr1	62732398	.	G	.	.	LowGQX	END=62732497	GT	./.
chr1	62733887	.	A	.	.	LowGQX	END=62734050	GT	./.
chr1	62734051	.	G	.	.	LowGQX	END=62734089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62734090	.	G	.	.	LowGQX	.	GT	./.
chr1	62734091	.	T	.	.	LowGQX	END=62734093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62734094	.	C	.	.	LowGQX	.	GT	./.
chr1	62734095	.	A	.	.	LowGQX	END=62734118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62734119	.	A	.	.	LowGQX	.	GT	./.
chr1	62734120	.	C	.	.	LowGQX	END=62734142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62734143	.	C	.	.	LowGQX	.	GT	./.
chr1	62734144	.	A	.	.	LowGQX	END=62734148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62734149	.	T	.	.	LowGQX	.	GT	./.
chr1	62734150	.	G	.	.	LowGQX	END=62734155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62734156	.	C	.	.	LowGQX	.	GT	./.
chr1	62734157	.	T	.	.	LowGQX	END=62734172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62734173	.	C	.	.	LowGQX	END=62734174	GT	./.
chr1	62734175	.	T	.	.	LowGQX	END=62734176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62734177	.	C	.	.	LowGQX	END=62734178	GT	./.
chr1	62734179	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62734180	.	G	.	.	LowGQX	.	GT	./.
chr1	62734181	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62734182	.	G	.	.	LowGQX	.	GT	./.
chr1	62734183	.	G	.	.	LowGQX	END=62734186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62734187	.	A	.	.	LowGQX	.	GT	./.
chr1	62734188	.	A	.	.	LowGQX	END=62734196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62734197	.	T	.	.	LowGQX	.	GT	./.
chr1	62734198	.	C	.	.	LowGQX	END=62734199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62734200	.	C	.	.	LowGQX	END=62734216	GT	./.
chr1	62734217	.	G	.	.	LowGQX	END=62734230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62734231	.	T	.	.	LowGQX	.	GT	./.
chr1	62734232	.	C	.	.	LowGQX	END=62734246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62737148	.	A	.	.	LowGQX	END=62737263	GT	./.
chr1	62738874	.	A	.	.	LowGQX	END=62739672	GT	./.
chr1	62739673	.	G	.	.	LowGQX	END=62739832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62739833	.	G	.	.	LowGQX	END=62740761	GT	./.
chr1	62747179	.	A	.	.	LowGQX	END=62747180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62747181	.	T	.	.	LowGQX	END=62747182	GT	./.
chr1	62747183	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62747184	.	T	.	.	LowGQX	.	GT	./.
chr1	62747185	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62747186	.	A	.	.	LowGQX	END=62747187	GT	./.
chr1	62747188	.	C	.	.	LowGQX	END=62747191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62747192	.	A	.	.	LowGQX	.	GT	./.
chr1	62747193	.	A	.	.	LowGQX	END=62747194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62747195	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	62747196	.	A	.	.	LowGQX	END=62747202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62747203	.	A	.	.	LowGQX	.	GT	./.
chr1	62747204	.	C	.	.	LowGQX	END=62747205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62747206	.	A	.	.	LowGQX	.	GT	./.
chr1	62747207	.	A	.	.	LowGQX	END=62747209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62747210	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	62747211	.	G	.	.	LowGQX	END=62747220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62747221	.	C	.	.	LowGQX	END=62747222	GT	./.
chr1	62747223	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62747224	.	C	.	.	LowGQX	.	GT	./.
chr1	62747225	.	T	.	.	LowGQX	END=62747226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62747227	.	T	.	.	LowGQX	END=62747228	GT	./.
chr1	62747229	.	T	.	.	LowGQX	END=62747239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62747240	.	T	.	.	LowGQX	.	GT	./.
chr1	62747241	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62747242	.	G	.	.	LowGQX	.	GT	./.
chr1	62747243	.	A	.	.	LowGQX	END=62747244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62747245	.	C	.	.	LowGQX	.	GT	./.
chr1	62747246	.	G	.	.	LowGQX	END=62747250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62747251	.	C	.	.	LowGQX	END=62747252	GT	./.
chr1	62747253	.	C	.	.	LowGQX	END=62747254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62747255	.	C	.	.	LowGQX	.	GT	./.
chr1	62747256	.	A	.	.	LowGQX	END=62747260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62747261	.	C	.	.	LowGQX	.	GT	./.
chr1	62747262	.	T	.	.	LowGQX	END=62747266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62747267	.	C	.	.	LowGQX	.	GT	./.
chr1	62747268	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62747269	.	C	.	.	LowGQX	.	GT	./.
chr1	62747270	.	T	.	.	LowGQX	END=62747275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62747276	.	T	.	.	LowGQX	END=62747278	GT	./.
chr1	62905537	.	A	.	.	LowGQX	END=62905710	GT	./.
chr1	62907157	.	A	.	.	LowGQX	END=62907281	GT	./.
chr1	62907864	.	A	.	.	LowGQX	END=62907942	GT	./.
chr1	62907943	.	A	.	.	LowGQX	END=62907972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62908828	.	A	.	.	LowGQX	END=62908992	GT	./.
chr1	62910407	.	A	.	.	LowGQX	END=62911102	GT	./.
chr1	62913010	.	A	.	.	LowGQX	END=62913131	GT	./.
chr1	62913132	.	G	.	.	LowGQX	END=62913184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	62914134	.	A	.	.	LowGQX	END=62914339	GT	./.
chr1	62915915	.	A	.	.	LowGQX	END=62916373	GT	./.
chr1	62916374	.	G	.	.	LowGQX	END=62916529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62916530	.	A	.	.	LowGQX	END=62916654	GT	./.
chr1	62920901	.	A	.	.	LowGQX	END=62920976	GT	./.
chr1	62920977	.	G	.	.	LowGQX	END=62921042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62921043	.	A	.	.	LowGQX	.	GT	./.
chr1	62921044	.	T	.	.	LowGQX	END=62921125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62921126	.	C	.	.	LowGQX	END=62921170	GT	./.
chr1	62923207	.	A	.	.	LowGQX	END=62923378	GT	./.
chr1	62939651	.	A	.	.	LowGQX	END=62939761	GT	./.
chr1	62940877	.	A	.	.	LowGQX	END=62941024	GT	./.
chr1	62941376	.	A	.	.	LowGQX	.	GT	./.
chr1	62941377	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62941378	.	C	.	.	LowGQX	.	GT	./.
chr1	62941379	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62941380	.	C	.	.	LowGQX	END=62941381	GT	./.
chr1	62941382	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62941383	.	C	.	.	LowGQX	.	GT	./.
chr1	62941384	.	T	.	.	LowGQX	END=62941402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62941403	.	C	.	.	LowGQX	.	GT	./.
chr1	62941404	.	T	.	.	LowGQX	END=62941410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62941411	.	A	.	.	LowGQX	END=62941412	GT	./.
chr1	62941413	.	T	.	.	LowGQX	END=62941417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62941418	.	G	.	.	LowGQX	.	GT	./.
chr1	62941419	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62941420	.	A	.	.	LowGQX	END=62941421	GT	./.
chr1	62941422	.	A	.	.	LowGQX	END=62941428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62941429	.	A	.	.	LowGQX	END=62941564	GT	./.
chr1	62941565	.	A	.	.	LowGQX	END=62941566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62941567	.	C	.	.	LowGQX	.	GT	./.
chr1	62941568	.	T	.	.	LowGQX	END=62941576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62941577	.	T	.	.	LowGQX	.	GT	./.
chr1	62941578	.	C	.	.	LowGQX	END=62941601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62941602	.	T	.	.	LowGQX	.	GT	./.
chr1	62941603	.	C	.	.	LowGQX	END=62941607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62941608	.	T	.	.	LowGQX	.	GT	./.
chr1	62941609	.	A	.	.	LowGQX	END=62941613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62941614	.	C	.	.	LowGQX	.	GT	./.
chr1	62941615	.	C	.	.	LowGQX	END=62941616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62941733	.	T	.	.	LowGQX	END=62941832	GT	./.
chr1	62943369	.	A	.	.	LowGQX	END=62943505	GT	./.
chr1	62945348	.	T	.	.	LowGQX	END=62945447	GT	./.
chr1	62953027	.	A	.	.	LowGQX	END=62953126	GT	./.
chr1	62954439	.	G	.	.	LowGQX	END=62954538	GT	./.
chr1	62954543	.	A	.	.	LowGQX	END=62954738	GT	./.
chr1	62958323	.	T	.	.	LowGQX	END=62958520	GT	./.
chr1	62959944	.	A	.	.	LowGQX	END=62960140	GT	./.
chr1	62961250	.	A	.	.	LowGQX	END=62961409	GT	./.
chr1	62961978	.	C	.	.	LowGQX	END=62962170	GT	./.
chr1	62970299	.	A	.	.	LowGQX	END=62970455	GT	./.
chr1	62971351	.	A	.	.	LowGQX	END=62971489	GT	./.
chr1	62973561	.	C	.	.	LowGQX	END=62973686	GT	./.
chr1	62973687	.	G	.	.	LowGQX	END=62973710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62973711	.	T	.	.	LowGQX	.	GT	./.
chr1	62973712	.	T	.	.	LowGQX	END=62973723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62973724	.	C	.	.	LowGQX	.	GT	./.
chr1	62973725	.	T	.	.	LowGQX	END=62973731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	62976246	.	A	.	.	LowGQX	END=62976346	GT	./.
chr1	62979113	.	A	.	.	LowGQX	END=62979279	GT	./.
chr1	62979385	.	A	.	.	LowGQX	END=62979571	GT	./.
chr1	62993820	.	A	.	.	LowGQX	END=62993978	GT	./.
chr1	62994946	.	A	.	.	LowGQX	END=62995119	GT	./.
chr1	63001162	.	A	.	.	LowGQX	END=63001305	GT	./.
chr1	63003560	.	A	.	.	LowGQX	END=63003734	GT	./.
chr1	63005214	.	A	.	.	LowGQX	END=63005331	GT	./.
chr1	63005421	.	A	.	.	LowGQX	END=63005565	GT	./.
chr1	63008277	.	A	.	.	LowGQX	END=63008319	GT	./.
chr1	63008320	.	C	.	.	LowGQX	END=63008376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63009322	.	T	.	.	LowGQX	END=63009333	GT	./.
chr1	63009334	.	G	.	.	LowGQX	END=63009343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63009344	.	G	.	.	LowGQX	END=63009345	GT	./.
chr1	63009346	.	C	.	.	LowGQX	END=63009369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63009370	.	G	.	.	LowGQX	.	GT	./.
chr1	63009371	.	A	.	.	LowGQX	END=63009421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	63010614	.	C	.	.	LowGQX	END=63010713	GT	./.
chr1	63018401	.	A	.	.	LowGQX	END=63018574	GT	./.
chr1	63021494	.	A	.	.	LowGQX	END=63021569	GT	./.
chr1	63021570	.	C	.	.	LowGQX	END=63021617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63021618	.	A	.	.	LowGQX	.	GT	./.
chr1	63021619	.	T	.	.	LowGQX	END=63021624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63021625	.	A	.	.	LowGQX	.	GT	./.
chr1	63021626	.	T	.	.	LowGQX	END=63021671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63021672	.	G	.	.	LowGQX	.	GT	./.
chr1	63021673	.	A	.	.	LowGQX	END=63021675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63021676	.	A	.	.	LowGQX	.	GT	./.
chr1	63021677	.	A	.	.	LowGQX	END=63021683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63024658	.	A	.	.	LowGQX	END=63024893	GT	./.
chr1	63027282	.	A	.	.	LowGQX	END=63027435	GT	./.
chr1	63042931	.	A	.	.	LowGQX	.	GT	./.
chr1	63042932	.	C	.	.	LowGQX	END=63043036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63044457	.	A	.	.	LowGQX	END=63044629	GT	./.
chr1	63044630	.	C	.	.	LowGQX	END=63044639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63048841	.	T	.	.	LowGQX	END=63048940	GT	./.
chr1	63050450	.	A	.	.	LowGQX	END=63050549	GT	./.
chr1	63052176	.	A	.	.	LowGQX	END=63052297	GT	./.
chr1	63063187	.	T	.	.	PASS	END=63063189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	63063190	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:51:60
chr1	63063191	.	A	.	.	PASS	END=63063205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	63063206	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:59:60
chr1	63063207	.	A	.	.	PASS	END=63063252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	63063253	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:51:60
chr1	63063254	.	T	.	.	PASS	END=63063263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	63063264	.	T	.	.	PASS	END=63063290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	63063291	.	A	.	.	PASS	END=63063343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	63063344	.	G	.	.	PASS	END=63063390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	63063391	.	C	.	.	PASS	END=63063470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	63063471	.	T	.	.	PASS	END=63063496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	63063497	.	T	.	.	PASS	END=63063537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:88:60
chr1	63063538	.	A	.	.	PASS	END=63063547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	63063548	.	A	.	.	PASS	END=63063553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	63063554	.	T	.	.	PASS	END=63063581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	63063582	.	T	.	.	PASS	END=63063587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	63063588	.	A	.	.	PASS	END=63063637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	63063638	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	63063639	.	T	.	.	PASS	END=63063641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	63063642	.	A	.	.	LowGQX	END=63063643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	63063644	.	A	.	.	PASS	END=63063648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	63063649	.	G	.	.	LowGQX	END=63063678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	63063679	.	T	.	.	LowGQX	END=63063689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	63063690	.	T	.	.	LowGQX	END=63063709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	63063710	.	A	.	.	LowGQX	END=63063733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	63063734	.	T	.	.	LowGQX	END=63063766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63063767	.	T	.	.	LowGQX	END=63063769	GT	./.
chr1	63063770	.	C	.	.	LowGQX	END=63063774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63063775	.	T	.	.	LowGQX	END=63063776	GT	./.
chr1	63063777	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	63063778	.	A	.	.	LowGQX	END=63063780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	63063781	.	T	.	.	LowGQX	.	GT	./.
chr1	63063782	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	63063783	.	T	.	.	LowGQX	.	GT	./.
chr1	63064316	.	T	.	.	PASS	END=63064337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	63064338	.	C	.	.	PASS	END=63064351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	63064352	.	A	.	.	PASS	END=63064366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	63064367	.	A	.	.	PASS	END=63064406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	63064407	.	T	.	.	PASS	END=63064504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	63064505	.	C	.	.	PASS	END=63064526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	63064527	.	A	.	.	PASS	END=63064528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	63066702	.	A	.	.	PASS	END=63066705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	63066706	.	G	.	.	PASS	END=63066726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	63066727	.	A	.	.	PASS	END=63066730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	63066731	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:30:60
chr1	63066732	.	A	.	.	PASS	END=63066744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	63066745	.	T	.	.	PASS	END=63066751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	63066752	.	G	.	.	PASS	END=63066866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:77:60
chr1	63066867	.	G	.	.	PASS	END=63066868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	63066869	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:45:60
chr1	63066870	.	A	.	.	PASS	END=63066873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	63066874	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:45:60
chr1	63066875	.	A	.	.	PASS	END=63066892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	63066893	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:51:60
chr1	63066894	.	T	.	.	PASS	END=63066911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	63066912	.	A	.	.	PASS	END=63066918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:67:60
chr1	63067389	.	G	.	.	PASS	END=63067398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:60
chr1	63067399	.	C	.	.	PASS	END=63067402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	63067403	.	T	.	.	PASS	END=63067419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	63067420	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:30:60
chr1	63067421	.	A	.	.	PASS	END=63067432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	63067433	.	A	.	.	PASS	END=63067452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	63067453	.	A	.	.	PASS	END=63067464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	63067465	.	T	.	.	PASS	END=63067499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	63067500	.	C	.	.	PASS	END=63067586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	63067587	.	A	.	.	PASS	END=63067604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	63067905	.	T	.	.	LowGQX	END=63067909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	63067910	.	C	.	.	LowGQX	END=63067913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	63067914	.	A	.	.	PASS	END=63067915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	63067916	.	A	.	.	LowGQX	END=63067917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	63067918	.	A	.	.	PASS	END=63067919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	63067920	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	63067921	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	63067922	.	A	.	.	PASS	END=63067923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	63067924	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	63067925	.	A	.	.	PASS	END=63067926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	63067927	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	63067928	.	A	.	.	PASS	END=63067929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	63067930	.	T	.	.	LowGQX	END=63067935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	63067936	.	A	.	.	PASS	END=63067943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	63067944	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	63067945	.	A	.	.	PASS	END=63067958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	63067959	.	G	.	.	PASS	END=63067971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	63067972	.	A	.	.	PASS	END=63068045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	63068046	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:35:27:60
chr1	63068047	.	T	.	.	PASS	END=63068064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	63068065	.	A	.	.	PASS	END=63068102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	63069589	.	T	.	.	PASS	END=63069598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	63069599	.	G	.	.	PASS	END=63069635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	63069636	.	T	.	.	PASS	END=63069647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	63069648	.	T	.	.	PASS	END=63069654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	63069655	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:96:60
chr1	63069656	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:54:60
chr1	63069657	.	C	.	.	PASS	END=63069665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	63069666	.	A	.	.	PASS	END=63069707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	63069708	.	G	.	.	PASS	END=63069748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	63069749	.	T	.	.	PASS	END=63069815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	63069816	.	C	.	.	PASS	END=63069856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	63069857	.	T	.	.	PASS	END=63069887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	63069888	.	T	.	.	PASS	END=63069905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr1	63069906	.	G	.	.	PASS	END=63069918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	63069919	.	G	.	.	PASS	END=63069927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	63069928	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:50:60
chr1	63069929	.	C	.	.	PASS	END=63069935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	63069936	.	T	.	.	PASS	END=63069951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	63069952	.	A	.	.	PASS	END=63069957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	63070253	.	G	.	.	PASS	END=63070259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	63070260	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:18:60
chr1	63070261	.	A	.	.	PASS	END=63070296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	63070297	.	C	.	.	PASS	END=63070317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	63070318	.	C	.	.	PASS	END=63070410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	63070411	.	T	.	.	PASS	END=63070433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	63070434	.	T	.	.	PASS	END=63070445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	63070446	.	C	.	.	PASS	END=63070448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:60
chr1	63070449	.	A	.	.	PASS	END=63070456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	63070457	.	T	.	.	PASS	END=63070468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	63070469	.	A	.	.	PASS	END=63070476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	63070477	.	A	.	.	PASS	END=63070489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	63070490	.	C	.	.	LowGQX	END=63070494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	63070495	.	G	.	.	PASS	END=63070499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	63070500	.	T	.	.	LowGQX	END=63070509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	63070510	.	A	.	.	PASS	END=63070514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	63070515	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	63070516	.	T	.	.	PASS	END=63070518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	63070519	.	A	.	.	LowGQX	END=63070520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	63070521	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	63070522	.	A	.	.	LowGQX	END=63070529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	63070530	.	C	.	.	LowGQX	END=63070537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	63070538	.	G	.	39.02	LowGQX	DP=6;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:3:9.03:60:9
chr1	63070539	.	T	.	39.02	LowGQX	DP=6;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:3:9.03:60:9
chr1	63084345	.	C	.	.	LowGQX	END=63084454	GT	./.
chr1	63084455	.	G	.	.	LowGQX	END=63084463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63084464	.	T	.	.	LowGQX	.	GT	./.
chr1	63084465	.	T	.	.	LowGQX	END=63084537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63084538	.	A	.	.	LowGQX	.	GT	./.
chr1	63084539	.	G	.	.	LowGQX	END=63084541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63085568	.	T	.	.	LowGQX	END=63085667	GT	./.
chr1	63090928	.	A	.	.	LowGQX	END=63091074	GT	./.
chr1	63096909	.	A	.	.	LowGQX	END=63097078	GT	./.
chr1	63099160	.	A	.	.	LowGQX	END=63099259	GT	./.
chr1	63100412	.	A	.	.	LowGQX	END=63100595	GT	./.
chr1	63102136	.	T	.	.	LowGQX	END=63102291	GT	./.
chr1	63113355	.	T	.	.	LowGQX	END=63113414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63113415	.	A	.	.	LowGQX	.	GT	./.
chr1	63113416	.	T	.	.	LowGQX	END=63113426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63113427	.	A	.	.	LowGQX	.	GT	./.
chr1	63113428	.	A	.	.	LowGQX	END=63113441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63113442	.	T	.	.	LowGQX	.	GT	./.
chr1	63113443	.	T	.	.	LowGQX	END=63113454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63113775	.	A	.	.	LowGQX	END=63113991	GT	./.
chr1	63114084	.	A	.	.	LowGQX	END=63114217	GT	./.
chr1	63119324	.	T	.	.	LowGQX	END=63119384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63119385	.	A	.	.	LowGQX	END=63119480	GT	./.
chr1	63119653	.	A	.	.	LowGQX	END=63119832	GT	./.
chr1	63128694	.	A	.	.	LowGQX	END=63128803	GT	./.
chr1	63153807	.	C	.	.	LowGQX	END=63153966	GT	./.
chr1	63269446	.	T	.	.	LowGQX	END=63269545	GT	./.
chr1	63270781	.	A	.	.	LowGQX	END=63270782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63270783	.	T	.	.	LowGQX	.	GT	./.
chr1	63270784	.	T	.	.	LowGQX	END=63270787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63270788	.	G	.	.	LowGQX	END=63270790	GT	./.
chr1	63270791	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63270792	.	G	.	.	LowGQX	.	GT	./.
chr1	63270793	.	A	.	.	LowGQX	END=63270800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63270801	.	T	.	.	LowGQX	.	GT	./.
chr1	63270802	.	A	.	.	LowGQX	END=63270803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63270804	.	T	.	.	LowGQX	END=63270805	GT	./.
chr1	63270806	.	A	.	.	LowGQX	END=63270812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63270813	.	G	.	.	LowGQX	.	GT	./.
chr1	63270814	.	T	.	.	LowGQX	END=63270817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63270818	.	C	.	.	LowGQX	END=63270819	GT	./.
chr1	63270820	.	T	.	.	LowGQX	END=63270822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63270823	.	C	.	.	LowGQX	.	GT	./.
chr1	63270824	.	T	.	.	LowGQX	END=63270870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63270871	.	T	.	.	LowGQX	END=63270934	GT	./.
chr1	63282244	.	A	.	.	LowGQX	END=63282350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63282351	.	T	.	.	LowGQX	END=63282481	GT	./.
chr1	63284674	.	A	.	.	LowGQX	END=63285008	GT	./.
chr1	63286796	.	T	.	.	LowGQX	END=63286895	GT	./.
chr1	63294709	.	A	.	.	LowGQX	END=63294888	GT	./.
chr1	63299699	.	T	.	.	LowGQX	END=63299714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63299715	.	T	.	.	LowGQX	.	GT	./.
chr1	63299716	.	T	.	.	LowGQX	END=63299733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63299734	.	T	.	.	LowGQX	.	GT	./.
chr1	63299735	.	G	.	.	LowGQX	END=63299760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63299761	.	A	.	.	LowGQX	END=63299798	GT	./.
chr1	63300436	.	T	.	.	LowGQX	END=63300535	GT	./.
chr1	63301012	.	T	.	.	LowGQX	END=63301111	GT	./.
chr1	63307047	.	T	.	.	LowGQX	END=63307220	GT	./.
chr1	63329661	.	A	.	.	LowGQX	END=63329709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63329710	.	A	.	.	LowGQX	.	GT	./.
chr1	63329711	.	A	.	.	LowGQX	END=63329738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63329739	.	C	.	.	LowGQX	.	GT	./.
chr1	63329740	.	A	.	.	LowGQX	END=63329771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63329772	.	C	.	.	LowGQX	END=63329860	GT	./.
chr1	63339923	.	C	.	.	LowGQX;LowMQ	END=63339955	GT	./.
chr1	63339956	.	T	.	.	LowGQX	END=63340022	GT	./.
chr1	63788717	.	A	.	.	PASS	END=63788722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	63788723	.	A	.	.	PASS	END=63788777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	63788778	.	G	.	.	PASS	END=63788871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:83:60
chr1	63788872	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:50:21:60
chr1	63788873	.	G	.	.	PASS	END=63788892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	63788893	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:54:60
chr1	63788894	.	G	.	.	PASS	END=63788910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	63788911	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:69:60
chr1	63788912	.	G	.	.	PASS	END=63788941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	63788942	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:72:60
chr1	63788943	.	C	.	.	PASS	END=63788947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	63788948	.	G	.	.	PASS	END=63788962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	63788963	.	C	.	.	PASS	END=63788968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	63788969	.	A	.	.	PASS	END=63788971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr1	63788972	.	G	.	.	PASS	END=63788979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	63788980	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:1:60
chr1	63788981	.	G	.	.	PASS	END=63788989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	63788990	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	63788991	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	63788992	.	C	.	.	LowGQX	END=63788993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	63788994	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	63788995	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	63788996	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	63788997	.	G	.	.	LowGQX	END=63788998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	63788999	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	63789000	.	G	.	.	LowGQX	END=63789001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	63789002	.	A	.	.	PASS	END=63789003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	63789004	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	63789005	.	G	.	51.06	LowGQX	DP=10;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:8:21.07:60:21
chr1	63789006	.	G	.	.	LowGQX	END=63789010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	63789011	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	63789012	.	G	.	.	LowGQX	END=63789013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	63789014	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	63789015	.	G	.	.	LowGQX	END=63789019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	63789020	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr1	63789021	.	G	.	.	LowGQX	END=63789032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	63789033	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	63789034	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	63789035	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	63789036	.	G	.	.	PASS	END=63789040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	63789041	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:3:60
chr1	63789042	.	A	.	.	PASS	END=63789047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:39:60
chr1	63789048	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:36:60
chr1	63789049	.	G	.	.	PASS	END=63789061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	63789062	.	G	.	.	PASS	END=63789097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	63789098	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:47:60
chr1	63789099	.	A	.	.	PASS	END=63789114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	63789115	.	G	.	.	PASS	END=63789123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	63789124	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:57:60
chr1	63789125	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:96:60
chr1	63789126	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:66:60
chr1	63789127	.	G	.	.	PASS	END=63789128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	63789129	.	A	.	.	PASS	END=63789130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:66:60
chr1	63789131	.	G	.	.	PASS	END=63789141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	63789142	.	G	.	.	PASS	END=63789158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	63789159	.	T	.	.	PASS	END=63789169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	63789170	.	C	.	.	PASS	END=63789209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	63789210	.	A	.	.	PASS	END=63789232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	63789233	.	C	.	.	PASS	END=63789360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	63789361	.	A	.	.	PASS	END=63789383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	63789384	.	C	.	.	PASS	END=63789414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	63789415	.	G	.	.	PASS	END=63789456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	63789457	.	A	.	.	PASS	END=63789481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	63789482	.	C	.	.	PASS	END=63789491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	63789492	.	A	.	108.23	PASS	DP=45;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:35:45:78.23:60:78
chr1	63789493	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:99:60
chr1	63789494	.	C	.	.	PASS	END=63789495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:57:60
chr1	63789496	.	T	.	93.20	PASS	DP=39;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:27:39:63.20:60:63
chr1	63789497	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:75:60
chr1	63789498	.	G	.	.	PASS	END=63789499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	63789500	.	C	.	.	PASS	END=63789501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:69:60
chr1	63789502	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:57:60
chr1	63789503	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:90:60
chr1	63789504	.	T	.	.	PASS	END=63789505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:54:60
chr1	63789506	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:99:60
chr1	63789507	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:45:60
chr1	63789508	.	G	.	.	PASS	END=63789509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	63789510	.	C	.	81.15	PASS	DP=35;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:28:35:51.16:60:51
chr1	63789511	.	T	G	92.29	SB	BaseQRankSum=-1.395;DP=29;Dels=0.00;FS=6.117;HRun=2;HaplotypeScore=28.5509;MQ=60;MQ0=0;MQRankSum=0.244;QD=3.18;ReadPosRankSum=3.432;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:17,12:29:99:122,0,347:60:92:0.414
chr1	63789512	.	G	.	.	PASS	END=63789513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	63789514	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:30:60
chr1	63789515	.	G	.	.	PASS	END=63789516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	63789517	.	C	.	66.07	PASS	DP=42;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:30:42:36.08:60:36
chr1	63789518	.	G	.	.	PASS	END=63789519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	63789520	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:43:3:60
chr1	63789521	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:99:60
chr1	63789522	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:66:60
chr1	63789523	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:99:60
chr1	63789524	.	C	.	78.14	PASS	DP=48;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:37:48:48.14:60:48
chr1	63789525	.	G	.	.	PASS	END=63789527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr1	63789528	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:63:60
chr1	63789529	.	C	.	.	PASS	END=63789530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	63789531	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:50:0:60
chr1	63789532	.	C	.	.	PASS	END=63789556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	63789557	.	C	.	.	PASS	END=63789563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	63789564	.	C	.	.	PASS	END=63789566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	63789567	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	63789568	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	63789569	.	G	.	.	LowGQX	END=63789571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr1	63789572	.	G	.	.	LowGQX	END=63789573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	63789574	.	C	.	.	LowGQX	END=63789590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	63789591	.	C	.	.	LowGQX	END=63789593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63789594	.	C	.	.	LowGQX	END=63789665	GT	./.
chr1	63789666	.	G	.	.	LowGQX	END=63789702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63789703	.	A	.	.	LowGQX	.	GT	./.
chr1	63789704	.	G	.	.	LowGQX	END=63789741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63789742	.	G	.	.	LowGQX	END=63789767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	63789768	.	A	.	.	LowGQX	END=63789785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	63789786	.	G	.	.	LowGQX	END=63789797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	63789798	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:3:60
chr1	63789799	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	63789800	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	63789801	.	G	.	.	LowGQX	END=63789815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	63789816	.	A	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	63789817	.	C	.	.	LowGQX	END=63789818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	63789819	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	63789820	.	C	.	.	LowGQX	END=63789831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	63789832	.	T	.	.	LowGQX	END=63789834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	63789835	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	63789836	.	G	.	.	LowGQX	END=63789840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	63789841	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	63789842	.	G	.	.	LowGQX	END=63789845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	63789846	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	63789847	.	G	.	.	LowGQX	END=63789860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	63789861	.	T	.	51.06	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:21.07:60:21
chr1	63789862	.	T	.	.	LowGQX	END=63789869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	63789870	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	63789871	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	63789872	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	63789873	.	A	.	.	LowGQX	END=63789874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	63789875	.	C	.	.	PASS	END=63789896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	63789897	.	G	.	.	PASS	END=63789938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:59
chr1	63789939	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:24:59
chr1	63789940	.	C	.	.	PASS	END=63789941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:59
chr1	63789942	.	G	.	.	PASS	END=63789950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:59
chr1	63789951	.	G	.	.	PASS	END=63789959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:59
chr1	63789960	.	A	.	.	PASS	END=63789962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:59
chr1	63789963	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:0:59
chr1	63789964	.	C	.	.	PASS	END=63789965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:59
chr1	63789966	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:18:59
chr1	63789967	.	C	.	.	PASS	END=63789968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:59
chr1	63789969	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:31:59
chr1	63789970	.	A	.	.	PASS	END=63789975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:59
chr1	63789976	.	T	.	.	PASS	END=63789985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:59
chr1	63789986	.	A	.	.	PASS	END=63790009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	63790010	.	G	.	.	PASS	END=63790020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	63790021	.	C	.	.	PASS	END=63790056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	63790057	.	C	.	.	PASS	END=63790160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	63790161	.	C	.	.	PASS	END=63790169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	63790170	.	C	.	.	PASS	END=63790177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	63836598	.	T	.	.	PASS	END=63836651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	63836652	.	G	.	.	PASS	END=63836676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	63836677	.	T	.	.	PASS	END=63836750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	63836751	.	A	.	.	PASS	END=63836781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	63862133	.	C	.	.	PASS	END=63862188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	63862189	.	G	.	.	PASS	END=63862219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	63862220	.	C	.	.	PASS	END=63862313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	63862314	.	A	.	.	PASS	END=63862319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	63867874	.	T	.	.	PASS	END=63867959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	63867960	.	G	.	.	PASS	END=63867994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	63867995	.	A	.	.	PASS	END=63868011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	63868012	.	T	.	.	PASS	END=63868024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	63868025	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:69:60
chr1	63868026	.	T	.	.	PASS	END=63868055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	63868056	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:48:60
chr1	63868057	.	T	.	.	PASS	END=63868065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	63870073	.	T	.	.	PASS	END=63870139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	63870140	.	C	.	.	PASS	END=63870234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	63870235	.	A	.	.	PASS	END=63870263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	63871937	.	G	.	.	PASS	END=63871987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	63871988	.	T	.	.	PASS	END=63872088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	63872089	.	T	.	.	PASS	END=63872121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	63872682	.	T	.	.	PASS	END=63872712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	63872713	.	C	.	.	PASS	END=63872735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	63872736	.	G	.	.	PASS	END=63872743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	63872744	.	A	.	.	PASS	END=63872760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	63872761	.	A	.	.	PASS	END=63872848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	63876764	.	A	.	.	PASS	END=63876805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	63876806	.	C	.	.	PASS	END=63877031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	63877032	.	A	.	.	PASS	END=63877053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	63877546	.	A	.	.	PASS	END=63877574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	63877575	.	C	.	.	PASS	END=63877622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	63877623	.	G	.	.	PASS	END=63877683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	63877684	.	C	.	.	PASS	END=63877713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	63877714	.	T	.	.	PASS	END=63877756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	63877757	.	T	.	.	PASS	END=63877772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	63877773	.	T	.	.	PASS	END=63877782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	63877783	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:99:60
chr1	63879681	.	A	.	.	PASS	END=63879746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	63879747	.	A	.	.	PASS	END=63879862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	63879863	.	T	.	.	PASS	END=63879868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	63881493	.	A	.	.	PASS	END=63881556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	63881557	.	T	.	.	PASS	END=63881579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	63881580	.	C	.	.	PASS	END=63881660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	63881661	.	T	.	.	PASS	END=63881679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	63884990	.	A	.	.	PASS	END=63885014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	63885015	.	T	.	.	PASS	END=63885032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	63885033	.	T	.	.	PASS	END=63885153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	63885154	.	A	.	.	PASS	END=63885162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	63894353	.	G	.	.	PASS	END=63894456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	63894457	.	T	.	.	PASS	END=63894492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	63894493	.	T	.	.	PASS	END=63894523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	63894548	.	A	.	.	PASS	END=63894649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	63894650	.	A	.	.	PASS	END=63894680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	63894681	.	T	.	.	PASS	END=63894750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	63894751	.	A	.	.	PASS	END=63894779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	63894780	.	A	.	.	PASS	END=63894821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	63894822	.	C	.	.	PASS	END=63894848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	63902443	.	C	.	.	PASS	END=63902455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	63902456	.	C	.	.	PASS	END=63902465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	63902466	.	T	.	.	PASS	END=63902467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	63902468	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:48:60
chr1	63902469	.	T	.	.	PASS	END=63902485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	63902486	.	C	.	.	PASS	END=63902487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:51:60
chr1	63902488	.	T	.	.	PASS	END=63902501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	63902502	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:51:60
chr1	63902503	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:93:60
chr1	63902504	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:52:60
chr1	63902505	.	A	.	.	PASS	END=63902512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	63902513	.	C	.	.	PASS	END=63902598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	63902599	.	T	.	.	PASS	END=63902626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	63902627	.	T	.	.	PASS	END=63902663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	63902664	.	T	.	.	PASS	END=63902668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	63902669	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:75:60
chr1	63902670	.	A	.	.	PASS	END=63902699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	63902700	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:60:60
chr1	63902701	.	T	.	.	PASS	END=63902724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	63902725	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:66:60
chr1	63902726	.	G	.	.	PASS	END=63902738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr1	63902739	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:57:60
chr1	63902740	.	A	.	.	PASS	END=63902742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:81:60
chr1	63912453	.	T	.	.	LowGQX	END=63912552	GT	./.
chr1	63913221	.	G	.	.	LowGQX	END=63913320	GT	./.
chr1	63919511	.	G	.	.	LowGQX	END=63919664	GT	./.
chr1	63920048	.	T	.	.	LowGQX	END=63920147	GT	./.
chr1	63920551	.	A	.	.	LowGQX	END=63920650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63944363	.	A	.	.	LowGQX	END=63944519	GT	./.
chr1	63955712	.	T	.	.	LowGQX	END=63955764	GT	./.
chr1	63955765	.	C	.	.	LowGQX	END=63955876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63955877	.	A	.	.	LowGQX	.	GT	./.
chr1	63955878	.	A	.	.	LowGQX	END=63955891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63974117	.	T	.	.	LowGQX	END=63974270	GT	./.
chr1	63975684	.	A	.	.	LowGQX	END=63975794	GT	./.
chr1	63975795	.	A	.	.	LowGQX	END=63975829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63975830	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	63975831	.	A	.	.	LowGQX	END=63975852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63988611	.	T	.	.	LowGQX	END=63988615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63988616	.	T	.	.	LowGQX	.	GT	./.
chr1	63988617	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63988618	.	T	.	.	LowGQX	.	GT	./.
chr1	63988619	.	G	.	.	LowGQX	END=63988627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63988628	.	T	.	.	LowGQX	.	GT	./.
chr1	63988629	.	G	.	.	LowGQX	END=63988690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63988691	.	T	.	.	LowGQX	.	GT	./.
chr1	63988692	.	T	.	.	LowGQX	END=63988709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63988710	.	G	.	.	LowGQX	.	GT	./.
chr1	63988753	.	T	.	.	LowGQX	END=63988758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63988759	.	A	.	.	LowGQX	END=63988852	GT	./.
chr1	63991242	.	G	.	.	LowGQX	END=63991401	GT	./.
chr1	63991402	.	C	.	.	LowGQX	END=63991441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	63997419	.	T	.	.	LowGQX	END=63997768	GT	./.
chr1	63998335	.	T	.	.	LowGQX	END=63998394	GT	./.
chr1	63998395	.	G	.	.	LowGQX	END=63998488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	63999113	.	T	.	.	LowGQX	END=63999322	GT	./.
chr1	63999764	.	A	.	.	LowGQX	END=63999889	GT	./.
chr1	64011545	.	T	.	.	LowGQX	END=64011730	GT	./.
chr1	64014962	.	C	.	.	LowGQX	END=64015061	GT	./.
chr1	64015159	.	G	.	.	LowGQX	END=64015261	GT	./.
chr1	64017394	.	A	.	.	LowGQX	END=64017507	GT	./.
chr1	64021027	.	A	.	.	LowGQX	END=64021036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64021037	.	A	.	.	LowGQX	END=64021188	GT	./.
chr1	64022783	.	A	.	.	LowGQX	END=64022962	GT	./.
chr1	64027378	.	A	.	.	LowGQX	END=64027530	GT	./.
chr1	64033938	.	A	.	.	LowGQX	END=64034247	GT	./.
chr1	64036690	.	A	.	.	LowGQX	END=64036801	GT	./.
chr1	64038041	.	G	.	.	LowGQX	END=64038200	GT	./.
chr1	64059109	.	C	.	.	PASS	END=64059178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	64059179	.	T	.	.	PASS	END=64059378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	64059379	.	A	.	.	PASS	END=64059413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	64059414	.	T	.	.	PASS	END=64059437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	64059438	.	C	.	.	PASS	END=64059439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	64059440	.	C	.	.	PASS	END=64059445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	64059446	.	C	.	.	PASS	END=64059456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	64089131	.	G	.	.	PASS	END=64089185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	64089186	.	C	.	.	PASS	END=64089215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	64089216	.	C	.	.	PASS	END=64089309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	64089310	.	G	.	.	PASS	END=64089362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	64089363	.	G	.	.	PASS	END=64089418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	64089419	.	A	.	.	PASS	END=64089431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	64095045	.	G	.	.	PASS	END=64095051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	64095052	.	G	.	.	PASS	END=64095058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	64095059	.	T	.	.	PASS	END=64095114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	64095115	.	G	.	.	PASS	END=64095135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	64095136	.	C	.	.	PASS	END=64095156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	64095157	.	T	.	.	PASS	END=64095211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	64095212	.	G	.	.	PASS	END=64095281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:90:60
chr1	64095282	.	A	.	.	PASS	END=64095296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	64095297	.	T	.	.	PASS	END=64095309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr1	64095562	.	T	.	.	PASS	END=64095575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:77:60
chr1	64095576	.	G	.	.	PASS	END=64095623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	64095624	.	G	.	.	PASS	END=64095695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	64095696	.	G	.	.	PASS	END=64095720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	64095721	.	A	.	.	PASS	END=64095730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	64095731	.	C	.	.	PASS	END=64095743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	64095744	.	T	.	.	PASS	END=64095749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	64095750	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:21:60
chr1	64095751	.	C	.	.	PASS	END=64095758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	64095759	.	G	.	.	PASS	END=64095796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	64095797	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	64095798	.	T	.	.	PASS	END=64095803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	64095804	.	T	.	.	PASS	END=64095810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	64097277	.	T	.	.	PASS	END=64097303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	64097304	.	T	.	.	PASS	END=64097428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	64097429	.	A	.	.	PASS	END=64097452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	64097453	.	G	.	.	PASS	END=64097467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	64097468	.	C	.	.	PASS	END=64097500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	64097501	.	T	.	.	PASS	END=64097504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:96:60
chr1	64100449	.	A	.	.	PASS	END=64100471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	64100472	.	G	.	.	PASS	END=64100476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	64100477	.	C	.	.	PASS	END=64100491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	64100492	.	G	.	.	PASS	END=64100548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	64100549	.	T	.	.	PASS	END=64100622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	64100623	.	C	.	.	PASS	END=64100637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	64100638	.	A	.	.	PASS	END=64100641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	64100642	.	C	.	.	PASS	END=64100649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:83:60
chr1	64100650	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr1	64100651	.	A	.	.	PASS	END=64100681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	64100682	.	G	.	.	PASS	END=64100701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	64100702	.	T	.	.	PASS	END=64100703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	64100704	.	C	.	.	PASS	END=64100721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	64100722	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:45:60
chr1	64100723	.	G	.	.	PASS	END=64100734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr1	64100735	.	T	.	.	PASS	END=64100739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	64100740	.	C	.	.	PASS	END=64100741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	64101854	.	T	.	.	PASS	END=64101885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	64101886	.	A	.	.	PASS	END=64101911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	64101912	.	A	.	.	PASS	END=64101945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	64101946	.	C	.	.	PASS	END=64102040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	64102041	.	C	.	.	PASS	END=64102062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	64102063	.	G	.	.	PASS	END=64102083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	64102084	.	T	.	.	PASS	END=64102097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	64102098	.	C	.	.	PASS	END=64102108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	64102109	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr1	64102110	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:93:60
chr1	64104305	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:99:60
chr1	64104306	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:63:60
chr1	64104307	.	C	.	.	PASS	END=64104344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:96:60
chr1	64104345	.	T	.	.	PASS	END=64104363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	64104364	.	G	.	.	PASS	END=64104458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	64104459	.	A	.	.	PASS	END=64104490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	64104491	.	T	.	.	PASS	END=64104509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	64104510	.	A	.	.	PASS	END=64104519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	64104520	.	C	.	.	PASS	END=64104522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	64114137	.	G	.	.	PASS	END=64114157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	64114158	.	T	.	.	PASS	END=64114162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	64114163	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:51:60
chr1	64114164	.	A	.	.	PASS	END=64114180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	64114181	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:42:60
chr1	64114182	.	C	.	.	PASS	END=64114190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	64114191	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:71:60
chr1	64114192	.	T	.	.	PASS	END=64114208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:92:60
chr1	64114209	.	A	.	.	PASS	END=64114243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	64114244	.	A	.	.	PASS	END=64114342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	64114343	.	G	.	.	PASS	END=64114358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	64114359	.	G	.	.	PASS	END=64114370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	64114371	.	A	.	.	PASS	END=64114374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	64117289	.	T	.	.	PASS	END=64117294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	64117295	.	G	.	.	PASS	END=64117306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	64117307	.	G	.	.	PASS	END=64117310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	64117311	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:59:60
chr1	64117312	.	T	.	.	PASS	END=64117318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	64117319	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:45:60
chr1	64117320	.	A	.	.	PASS	END=64117342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	64117343	.	T	.	.	PASS	END=64117379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	64117380	.	A	.	.	PASS	END=64117403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	64117404	.	A	.	.	PASS	END=64117464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	64117465	.	A	.	.	PASS	END=64117505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:79:60
chr1	64117506	.	A	.	.	PASS	END=64117535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	64117536	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:66:60
chr1	64117537	.	G	.	.	PASS	END=64117552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	64117553	.	A	.	.	PASS	END=64117574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	64119952	.	C	.	.	PASS	END=64120002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	64120003	.	G	.	.	PASS	END=64120054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	64120055	.	G	.	.	PASS	END=64120156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	64120157	.	C	.	.	PASS	END=64120188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	64125206	.	A	.	.	PASS	END=64125235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	64125236	.	T	.	.	PASS	END=64125303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:90:60
chr1	64125304	.	G	.	.	PASS	END=64125314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr1	64125315	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr1	64125316	.	G	.	.	PASS	END=64125327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	64125328	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:71:60
chr1	64125329	.	C	.	.	PASS	END=64125350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	64125351	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:75:60
chr1	64125352	.	C	.	.	PASS	END=64125368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	64125369	.	G	.	.	PASS	END=64125371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	64125372	.	C	.	.	PASS	END=64125374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	64125375	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:24:60
chr1	64125376	.	C	.	.	PASS	END=64125386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	64125387	.	C	.	.	PASS	END=64125388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	64125389	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	64125390	.	T	.	51.06	LowGQX	DP=15;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:12:15:21.06:60:21
chr1	64125391	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	64125392	.	C	.	.	PASS	END=64125393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	64125394	.	A	.	.	LowGQX	END=64125396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	64125397	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	64239983	.	G	.	.	LowGQX	END=64240082	GT	./.
chr1	64240085	.	A	.	.	LowGQX	END=64240240	GT	./.
chr1	64474963	.	C	.	.	LowGQX	END=64475045	GT	./.
chr1	64475046	.	A	.	.	LowGQX	END=64475062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	64515361	.	A	.	.	LowGQX	END=64515652	GT	./.
chr1	64516324	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64516325	.	A	.	.	LowGQX	.	GT	./.
chr1	64516326	.	C	.	.	LowGQX	END=64516354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64516355	.	C	.	.	LowGQX	.	GT	./.
chr1	64516356	.	A	.	.	LowGQX	END=64516358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64516359	.	C	.	.	LowGQX	END=64516388	GT	./.
chr1	64516389	.	G	.	.	LowGQX	END=64516423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64603050	.	A	.	.	LowGQX	END=64603102	GT	./.
chr1	64603103	.	T	.	.	LowGQX	END=64603125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64603126	.	C	.	.	LowGQX	.	GT	./.
chr1	64603127	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64603128	.	G	.	.	LowGQX	END=64603129	GT	./.
chr1	64603130	.	C	.	.	LowGQX	END=64603131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64603132	.	A	.	.	LowGQX	.	GT	./.
chr1	64603133	.	T	.	.	LowGQX	END=64603136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64603137	.	G	.	.	LowGQX	.	GT	./.
chr1	64603138	.	A	.	.	LowGQX	END=64603144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64603145	.	G	.	.	LowGQX	END=64603146	GT	./.
chr1	64603147	.	A	.	.	LowGQX	END=64603148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64603149	.	A	.	.	LowGQX	.	GT	./.
chr1	64603150	.	T	.	.	LowGQX	END=64603153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64603154	.	A	.	.	LowGQX	.	GT	./.
chr1	64603155	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64603156	.	G	.	.	LowGQX	END=64603158	GT	./.
chr1	64603159	.	A	.	.	LowGQX	END=64603178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64603179	.	G	.	.	LowGQX	.	GT	./.
chr1	64603180	.	G	.	.	LowGQX	END=64603181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	64605790	.	A	.	.	LowGQX	END=64606111	GT	./.
chr1	64608086	.	A	.	.	LowGQX	END=64608090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64608091	.	A	.	.	LowGQX	.	GT	./.
chr1	64608092	.	C	.	.	LowGQX	END=64608093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64608094	.	A	.	.	LowGQX	END=64608095	GT	./.
chr1	64608096	.	T	.	.	LowGQX	END=64608102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64608103	.	A	.	.	LowGQX	.	GT	./.
chr1	64608104	.	C	.	.	LowGQX	END=64608113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64608114	.	G	.	.	LowGQX	.	GT	./.
chr1	64608115	.	T	.	.	LowGQX	END=64608122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64608123	.	C	.	.	LowGQX	END=64608296	GT	./.
chr1	64608297	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64608298	.	A	.	.	LowGQX	.	GT	./.
chr1	64608299	.	C	.	.	LowGQX	END=64608300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64608301	.	T	.	.	LowGQX	END=64608302	GT	./.
chr1	64608303	.	A	.	.	LowGQX	END=64608304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64608305	.	G	.	.	LowGQX	.	GT	./.
chr1	64608306	.	T	.	.	LowGQX	END=64608310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64608311	.	T	.	.	LowGQX	.	GT	./.
chr1	64608312	.	C	.	.	LowGQX	END=64608313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64608314	.	G	.	.	LowGQX	END=64608315	GT	./.
chr1	64608316	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64608317	.	T	.	.	LowGQX	.	GT	./.
chr1	64608318	.	G	.	.	LowGQX	END=64608324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64608325	.	C	.	.	LowGQX	.	GT	./.
chr1	64608326	.	A	.	.	LowGQX	END=64608328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64608329	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	64608330	.	T	.	.	LowGQX	END=64608331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64608332	.	C	.	.	LowGQX	.	GT	./.
chr1	64608333	.	G	.	.	LowGQX	END=64608341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64608342	.	A	.	.	LowGQX	END=64608343	GT	./.
chr1	64624662	.	A	.	.	LowGQX	END=64624877	GT	./.
chr1	64643109	.	A	.	.	LowGQX	END=64643384	GT	./.
chr1	64643385	.	A	.	.	LowGQX	END=64643593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64643594	.	G	.	.	LowGQX	END=64644107	GT	./.
chr1	64644108	.	G	.	.	LowGQX	END=64644216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	64644217	.	T	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	64644218	.	C	.	.	LowGQX	END=64644219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	64644220	.	A	.	.	LowGQX	END=64644540	GT	./.
chr1	64669717	.	A	.	.	LowGQX	END=64669816	GT	./.
chr1	64671260	.	T	.	.	LowGQX	END=64671412	GT	./.
chr1	64672444	.	T	.	.	LowGQX	END=64672594	GT	./.
chr1	64676423	.	A	.	.	LowGQX	END=64676524	GT	./.
chr1	64680496	.	A	.	.	LowGQX	END=64680617	GT	./.
chr1	64686450	.	A	.	.	LowGQX	END=64686616	GT	./.
chr1	64698239	.	T	.	.	LowGQX	END=64698338	GT	./.
chr1	64707273	.	T	.	.	LowGQX	END=64707425	GT	./.
chr1	64709765	.	A	.	.	LowGQX	END=64709864	GT	./.
chr1	64726282	.	C	.	.	LowGQX	END=64726286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64726287	.	T	.	.	LowGQX	END=64726289	GT	./.
chr1	64726290	.	T	.	.	LowGQX	END=64726291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64726292	.	C	.	.	LowGQX	END=64726293	GT	./.
chr1	64726294	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64726295	.	T	.	.	LowGQX	END=64726296	GT	./.
chr1	64726297	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64726298	.	C	.	.	LowGQX	.	GT	./.
chr1	64726299	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64726300	.	A	.	.	LowGQX	.	GT	./.
chr1	64726301	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64726302	.	T	.	.	LowGQX	END=64726303	GT	./.
chr1	64726304	.	T	.	.	LowGQX	END=64726305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64726306	.	G	.	.	LowGQX	END=64726308	GT	./.
chr1	64726309	.	T	.	.	LowGQX	END=64726310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64726311	.	G	.	.	LowGQX	END=64726381	GT	./.
chr1	64732684	.	A	.	.	LowGQX	END=64732891	GT	./.
chr1	64936427	.	C	.	.	LowGQX	END=64936547	GT	./.
chr1	64936548	.	A	.	.	LowGQX	END=64936557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64936558	.	A	.	.	LowGQX	.	GT	./.
chr1	64936559	.	G	.	.	LowGQX	END=64936599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	64936600	.	A	.	.	LowGQX	.	GT	./.
chr1	64936601	.	G	.	.	LowGQX	END=64936627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	65016259	.	A	.	.	LowGQX	END=65016358	GT	./.
chr1	65047837	.	A	.	.	LowGQX	END=65047984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65047985	.	G	.	.	LowGQX	END=65047989	GT	./.
chr1	65068427	.	A	.	.	LowGQX	END=65068645	GT	./.
chr1	65095036	.	A	.	.	LowGQX	END=65095072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65095073	.	A	.	.	LowGQX	.	GT	./.
chr1	65095074	.	A	.	.	LowGQX	END=65095079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65095080	.	A	.	.	LowGQX	.	GT	./.
chr1	65095081	.	A	.	.	LowGQX	END=65095166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65098280	.	A	.	.	LowGQX	END=65098422	GT	./.
chr1	65098423	.	C	.	.	LowGQX	END=65098428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65099725	.	A	.	.	LowGQX	END=65099945	GT	./.
chr1	65107501	.	A	.	.	LowGQX	END=65107527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	65107528	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	65107529	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	65107530	.	C	.	.	LowGQX	END=65107541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	65107542	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	65107543	.	A	.	.	LowGQX	END=65107561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	65107562	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	65107563	.	A	.	.	LowGQX	END=65107564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	65107565	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	65107566	.	A	.	.	LowGQX	END=65107599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65107600	.	A	.	.	LowGQX	.	GT	./.
chr1	65107601	.	A	.	.	LowGQX	END=65107625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65107626	.	T	.	.	LowGQX	END=65107654	GT	./.
chr1	65113482	.	A	.	.	LowGQX	END=65113554	GT	./.
chr1	65113555	.	G	.	.	LowGQX	END=65113557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113558	.	C	.	.	LowGQX	.	GT	./.
chr1	65113559	.	C	.	.	LowGQX	END=65113567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113568	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	65113569	.	G	.	.	LowGQX	END=65113570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113571	.	C	.	.	LowGQX	.	GT	./.
chr1	65113572	.	C	.	.	LowGQX	END=65113575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113576	.	C	.	.	LowGQX	.	GT	./.
chr1	65113577	.	C	.	.	LowGQX	END=65113587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113588	.	G	.	.	LowGQX	.	GT	./.
chr1	65113589	.	G	.	.	LowGQX	END=65113603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113604	.	T	.	.	LowGQX	.	GT	./.
chr1	65113605	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113606	.	A	.	.	LowGQX	.	GT	./.
chr1	65113607	.	A	.	.	LowGQX	END=65113623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113624	.	G	.	.	LowGQX	.	GT	./.
chr1	65113625	.	A	.	.	LowGQX	END=65113628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113629	.	C	.	.	LowGQX	.	GT	./.
chr1	65113630	.	A	.	.	LowGQX	END=65113634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113635	.	G	.	.	LowGQX	.	GT	./.
chr1	65113636	.	G	.	.	LowGQX	END=65113637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113638	.	C	.	.	LowGQX	.	GT	./.
chr1	65113639	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113640	.	G	.	.	LowGQX	.	GT	./.
chr1	65113641	.	G	.	.	LowGQX	END=65113646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113647	.	C	.	.	LowGQX	END=65113648	GT	./.
chr1	65113649	.	C	.	.	LowGQX	END=65113652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113653	.	C	.	.	LowGQX	.	GT	./.
chr1	65113654	.	C	.	.	LowGQX	END=65113663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113664	.	G	.	.	LowGQX	END=65113665	GT	./.
chr1	65113666	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113667	.	T	.	.	LowGQX	.	GT	./.
chr1	65113668	.	G	.	.	LowGQX	END=65113669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113670	.	T	.	.	LowGQX	END=65113671	GT	./.
chr1	65113672	.	G	.	.	LowGQX	END=65113675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113676	.	A	.	.	LowGQX	.	GT	./.
chr1	65113677	.	A	.	.	LowGQX	END=65113680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113681	.	G	.	.	LowGQX	.	GT	./.
chr1	65113682	.	T	.	.	LowGQX	END=65113694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113695	.	C	.	.	LowGQX	.	GT	./.
chr1	65113696	.	T	.	.	LowGQX	END=65113702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	65113703	.	A	.	.	LowGQX	.	GT	./.
chr1	65113704	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	65113705	.	G	.	.	LowGQX	END=65113707	GT	./.
chr1	65113708	.	A	.	.	LowGQX	END=65113709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113710	.	G	.	.	LowGQX	END=65113711	GT	./.
chr1	65113712	.	G	.	.	LowGQX	END=65113713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113714	.	G	.	.	LowGQX	.	GT	./.
chr1	65113715	.	A	.	.	LowGQX	END=65113716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65113717	.	G	.	.	LowGQX	END=65113718	GT	./.
chr1	65113719	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65117842	.	A	.	.	LowGQX	END=65117995	GT	./.
chr1	65119439	.	A	.	.	LowGQX	END=65119566	GT	./.
chr1	65120367	.	A	.	.	LowGQX	END=65120377	GT	./.
chr1	65120378	.	G	.	.	LowGQX	END=65120488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65124386	.	A	.	.	LowGQX	END=65124558	GT	./.
chr1	65129376	.	A	.	.	LowGQX	END=65129522	GT	./.
chr1	65130179	.	A	.	.	LowGQX	END=65130195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65130196	.	G	.	.	LowGQX	.	GT	./.
chr1	65130197	.	A	.	.	LowGQX	END=65130199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65130200	.	T	.	.	LowGQX	.	GT	./.
chr1	65130201	.	A	.	.	LowGQX	END=65130204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65130205	.	G	.	.	LowGQX	.	GT	./.
chr1	65130206	.	C	.	.	LowGQX	END=65130217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65130218	.	T	.	.	LowGQX	.	GT	./.
chr1	65130219	.	C	.	.	LowGQX	END=65130232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65130233	.	T	.	.	LowGQX	.	GT	./.
chr1	65130234	.	G	.	.	LowGQX	END=65130252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65130253	.	A	.	.	LowGQX	END=65130364	GT	./.
chr1	65131738	.	A	.	.	LowGQX	END=65131763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65131764	.	A	.	.	LowGQX	END=65131852	GT	./.
chr1	65137245	.	A	.	.	LowGQX	END=65137343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65137344	.	A	.	.	LowGQX	END=65137371	GT	./.
chr1	65138839	.	A	.	.	LowGQX	END=65138942	GT	./.
chr1	65139029	.	A	.	.	LowGQX	END=65139149	GT	./.
chr1	65141082	.	A	.	.	LowGQX	END=65141246	GT	./.
chr1	65141574	.	T	.	.	LowGQX	END=65141673	GT	./.
chr1	65142576	.	A	.	.	LowGQX	END=65142696	GT	./.
chr1	65143800	.	C	.	.	LowGQX	END=65143846	GT	./.
chr1	65143847	.	G	.	.	LowGQX	END=65143995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65145276	.	A	.	.	LowGQX	END=65145441	GT	./.
chr1	65146930	.	A	.	.	LowGQX	END=65146931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65146932	.	G	.	.	LowGQX	.	GT	./.
chr1	65146933	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65146934	.	T	.	.	LowGQX	.	GT	./.
chr1	65146935	.	G	.	.	LowGQX	END=65146939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65146940	.	G	.	.	LowGQX	END=65146941	GT	./.
chr1	65146942	.	A	.	.	LowGQX	END=65146956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65146957	.	G	.	.	LowGQX	.	GT	./.
chr1	65146958	.	T	.	.	LowGQX	END=65146975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65146976	.	A	.	.	LowGQX	END=65146977	GT	./.
chr1	65146978	.	A	.	.	LowGQX	END=65146981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65146982	.	G	.	.	LowGQX	.	GT	./.
chr1	65146983	.	A	.	.	LowGQX	END=65146985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65146986	.	G	.	.	LowGQX	.	GT	./.
chr1	65146987	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65146988	.	G	.	.	LowGQX	.	GT	./.
chr1	65146989	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65146990	.	C	.	.	LowGQX	.	GT	./.
chr1	65146991	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65146992	.	A	.	.	LowGQX	.	GT	./.
chr1	65146993	.	C	.	.	LowGQX	END=65147005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65147006	.	G	.	.	LowGQX	END=65147007	GT	./.
chr1	65147008	.	C	.	.	LowGQX	END=65147011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65147012	.	G	.	.	LowGQX	.	GT	./.
chr1	65147013	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	65147014	.	C	.	.	LowGQX	END=65147015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65147016	.	T	.	.	LowGQX	END=65147029	GT	./.
chr1	65147686	.	A	.	.	LowGQX	END=65147791	GT	./.
chr1	65157004	.	A	.	.	LowGQX	END=65157246	GT	./.
chr1	65210843	.	G	.	.	LowGQX	END=65211112	GT	./.
chr1	65234267	.	A	.	.	LowGQX	END=65234422	GT	./.
chr1	65243304	.	A	.	.	LowGQX	END=65243777	GT	./.
chr1	65247061	.	A	.	.	LowGQX	END=65247256	GT	./.
chr1	65255069	.	A	.	.	LowGQX	END=65255138	GT	./.
chr1	65255139	.	C	.	.	LowGQX	END=65255199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65268652	.	C	.	.	LowGQX	END=65268751	GT	./.
chr1	65270416	.	G	.	.	LowGQX	END=65270523	GT	./.
chr1	65270672	.	A	.	.	LowGQX	END=65270698	GT	./.
chr1	65270699	.	C	.	.	LowGQX	END=65270757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65270758	.	T	.	.	LowGQX	.	GT	./.
chr1	65270759	.	T	.	.	LowGQX	END=65270773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65270774	.	G	.	.	LowGQX	.	GT	./.
chr1	65270775	.	A	.	.	LowGQX	END=65270790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65272887	.	A	.	.	LowGQX	END=65272978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65272979	.	G	.	.	LowGQX	.	GT	./.
chr1	65272980	.	G	.	.	LowGQX	END=65272983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65272984	.	G	.	.	LowGQX	.	GT	./.
chr1	65272985	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65272986	.	G	.	.	LowGQX	END=65272987	GT	./.
chr1	65272988	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65272989	.	C	.	.	LowGQX	.	GT	./.
chr1	65272990	.	A	.	.	LowGQX	END=65272991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65272992	.	T	.	.	LowGQX	.	GT	./.
chr1	65272993	.	A	.	.	LowGQX	END=65273000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65273001	.	G	.	.	LowGQX	.	GT	./.
chr1	65273002	.	G	.	.	LowGQX	END=65273004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65273005	.	A	.	.	LowGQX	.	GT	./.
chr1	65273006	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65273007	.	A	.	.	LowGQX	.	GT	./.
chr1	65273008	.	C	.	.	LowGQX	END=65273010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65273011	.	C	.	.	LowGQX	.	GT	./.
chr1	65273012	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65273013	.	A	.	.	LowGQX	.	GT	./.
chr1	65273014	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65273015	.	C	.	.	LowGQX	END=65273016	GT	./.
chr1	65273017	.	A	.	.	LowGQX	END=65273027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65273028	.	G	.	.	LowGQX	END=65273030	GT	./.
chr1	65273031	.	A	.	.	LowGQX	END=65273032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65273033	.	A	.	.	LowGQX	.	GT	./.
chr1	65273034	.	A	.	.	LowGQX	END=65273035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65273036	.	G	.	.	LowGQX	.	GT	./.
chr1	65273037	.	A	.	.	LowGQX	END=65273044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65273045	.	C	.	.	LowGQX	END=65273046	GT	./.
chr1	65273047	.	G	.	.	LowGQX	END=65273050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65273051	.	C	.	.	LowGQX	END=65273159	GT	./.
chr1	65278419	.	A	.	.	LowGQX	END=65278455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65278456	.	A	.	.	LowGQX	END=65278534	GT	./.
chr1	65280385	.	A	.	.	LowGQX	END=65280525	GT	./.
chr1	65296520	.	A	.	.	LowGQX	END=65296670	GT	./.
chr1	65300243	.	T	.	.	LowGQX	END=65300244	GT	./.
chr1	65300245	.	T	.	.	LowGQX	END=65300247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65300248	.	T	.	.	LowGQX	.	GT	./.
chr1	65300249	.	T	.	.	LowGQX	END=65300251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65300252	.	A	.	.	LowGQX	END=65300253	GT	./.
chr1	65300254	.	A	.	.	LowGQX	END=65300258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65300259	.	C	.	.	LowGQX	END=65300342	GT	./.
chr1	65301077	.	A	.	.	LowGQX	END=65301193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65301194	.	A	.	.	LowGQX	.	GT	./.
chr1	65301195	.	T	.	.	LowGQX	END=65301214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65301215	.	C	.	.	LowGQX	.	GT	./.
chr1	65301216	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65301217	.	T	.	.	LowGQX	END=65301222	GT	./.
chr1	65301223	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65301224	.	T	.	.	LowGQX	.	GT	./.
chr1	65301225	.	T	.	.	LowGQX	END=65301228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65301229	.	A	.	.	LowGQX	.	GT	./.
chr1	65301230	.	G	.	.	LowGQX	END=65301234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65301235	.	T	.	.	LowGQX	.	GT	./.
chr1	65301236	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65301779	.	A	.	.	LowGQX	END=65301900	GT	./.
chr1	65303613	.	A	.	.	LowGQX	END=65303646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65303647	.	G	.	.	LowGQX	END=65303789	GT	./.
chr1	65304146	.	A	.	.	LowGQX	END=65304274	GT	./.
chr1	65305284	.	A	.	.	LowGQX	END=65305480	GT	./.
chr1	65306926	.	A	.	.	LowGQX	END=65307025	GT	./.
chr1	65307132	.	A	.	.	LowGQX	END=65307159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	65307160	.	C	.	.	LowGQX	.	GT	./.
chr1	65307161	.	T	.	.	LowGQX	END=65307238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65307239	.	A	.	.	LowGQX	END=65307286	GT	./.
chr1	65309745	.	A	.	.	LowGQX	END=65309900	GT	./.
chr1	65310435	.	A	.	.	LowGQX	END=65310438	GT	./.
chr1	65310439	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65310440	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	65310441	.	C	.	.	LowGQX	END=65310488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65310489	.	T	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	65310490	.	G	.	.	LowGQX	END=65310574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	65311194	.	A	.	.	LowGQX	END=65311325	GT	./.
chr1	65312326	.	A	.	.	LowGQX	END=65312425	GT	./.
chr1	65313173	.	A	.	.	LowGQX	END=65313195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65313196	.	T	.	.	LowGQX	.	GT	./.
chr1	65313197	.	T	.	.	LowGQX	END=65313200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65313201	.	A	.	.	LowGQX	.	GT	./.
chr1	65313202	.	G	.	.	LowGQX	END=65313207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65313208	.	C	.	.	LowGQX	.	GT	./.
chr1	65313209	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65313210	.	C	.	.	LowGQX	.	GT	./.
chr1	65313211	.	T	.	.	LowGQX	END=65313214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65313215	.	C	.	.	LowGQX	END=65313216	GT	./.
chr1	65313217	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65313218	.	G	.	.	LowGQX	.	GT	./.
chr1	65313219	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65313220	.	A	.	.	LowGQX	END=65313221	GT	./.
chr1	65313222	.	A	.	.	LowGQX	END=65313225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65313226	.	C	.	.	LowGQX	END=65313227	GT	./.
chr1	65313228	.	C	.	.	LowGQX	END=65313229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65313230	.	G	.	.	LowGQX	.	GT	./.
chr1	65313231	.	T	.	.	LowGQX	END=65313246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65313247	.	C	.	.	LowGQX	.	GT	./.
chr1	65313248	.	T	.	.	LowGQX	END=65313268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65313269	.	C	.	.	LowGQX	.	GT	./.
chr1	65313270	.	T	.	.	LowGQX	END=65313271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65313272	.	C	.	.	LowGQX	.	GT	./.
chr1	65313273	.	T	.	.	LowGQX	END=65313276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65313277	.	C	.	.	LowGQX	END=65313278	GT	./.
chr1	65313279	.	G	.	.	LowGQX	END=65313305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65313306	.	A	.	.	LowGQX	END=65313317	GT	./.
chr1	65313318	.	G	.	.	LowGQX	END=65313360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65316485	.	A	.	.	LowGQX	END=65316595	GT	./.
chr1	65321190	.	A	.	.	LowGQX	END=65321240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	65321241	.	C	.	.	LowGQX	END=65321383	GT	./.
chr1	65323337	.	A	.	.	LowGQX	END=65323360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65323361	.	A	.	.	LowGQX	.	GT	./.
chr1	65323362	.	C	.	.	LowGQX	END=65323397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65323398	.	A	.	.	LowGQX	.	GT	./.
chr1	65323399	.	C	.	.	LowGQX	END=65323405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65323406	.	A	.	.	LowGQX	.	GT	./.
chr1	65323407	.	C	.	.	LowGQX	END=65323464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65325786	.	A	.	.	LowGQX	END=65325947	GT	./.
chr1	65330468	.	A	.	.	LowGQX	END=65330657	GT	./.
chr1	65332547	.	A	.	.	LowGQX	END=65332815	GT	./.
chr1	65332816	.	A	.	.	LowGQX	END=65332853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	65332854	.	T	.	.	LowGQX	END=65332893	GT	./.
chr1	65334992	.	A	.	.	LowGQX	END=65335159	GT	./.
chr1	65339051	.	A	.	.	LowGQX	END=65339208	GT	./.
chr1	65344706	.	A	.	.	LowGQX	END=65344833	GT	./.
chr1	65348958	.	A	.	.	LowGQX	END=65349001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	65349002	.	A	.	.	LowGQX	END=65349014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65349015	.	C	.	.	LowGQX	.	GT	./.
chr1	65349016	.	A	.	.	LowGQX	END=65349026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65349027	.	C	.	.	LowGQX	END=65349129	GT	./.
chr1	65349130	.	G	.	.	LowGQX	END=65349160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	65351895	.	T	.	.	LowGQX	END=65351994	GT	./.
chr1	65524045	.	T	.	.	LowGQX	END=65524256	GT	./.
chr1	65614089	.	C	.	.	LowGQX	.	GT	./.
chr1	65614090	.	A	.	.	LowGQX	END=65614093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	65614094	.	G	.	.	LowGQX	.	GT	./.
chr1	65614095	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:45
chr1	65614096	.	T	.	.	LowGQX	.	GT	./.
chr1	65614097	.	T	.	.	LowGQX	END=65614111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	65614112	.	G	.	.	LowGQX	END=65614114	GT	./.
chr1	65614115	.	G	.	.	LowGQX	END=65614147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:53
chr1	65614148	.	A	.	.	LowGQX	.	GT	./.
chr1	65614149	.	C	.	.	LowGQX	END=65614162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65614163	.	A	.	.	LowGQX	.	GT	./.
chr1	65614164	.	T	.	.	LowGQX	END=65614173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65614174	.	C	.	.	LowGQX	.	GT	./.
chr1	65614175	.	T	.	.	LowGQX	END=65614203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65614204	.	C	.	.	LowGQX	.	GT	./.
chr1	65614205	.	T	.	.	LowGQX	END=65614228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	65614229	.	A	.	.	LowGQX	.	GT	./.
chr1	65614230	.	G	.	.	LowGQX	END=65614237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	65656391	.	A	.	.	LowGQX	END=65656514	GT	./.
chr1	65684435	.	A	.	.	LowGQX	END=65684611	GT	./.
chr1	65690433	.	A	.	.	LowGQX	END=65690555	GT	./.
chr1	65691744	.	A	.	.	LowGQX	END=65691840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65691841	.	A	.	.	LowGQX	END=65691862	GT	./.
chr1	65720147	.	A	.	.	LowGQX	END=65720516	GT	./.
chr1	65730495	.	G	.	.	PASS	END=65730508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	65730509	.	T	.	.	PASS	END=65730530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	65730531	.	A	.	.	PASS	END=65730548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:51:60
chr1	65730549	.	A	.	.	PASS	END=65730568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	65730569	.	T	.	.	PASS	END=65730592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	65730593	.	A	.	.	PASS	END=65730610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	65730611	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:59:60
chr1	65730612	.	A	.	.	PASS	END=65730639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	65730640	.	G	.	.	PASS	END=65730654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	65775417	.	C	.	.	PASS	END=65775431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	65775432	.	A	.	.	PASS	END=65775445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	65775446	.	C	.	.	PASS	END=65775463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	65775464	.	C	.	.	PASS	END=65775587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	65775588	.	C	.	.	PASS	END=65775607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	65775608	.	C	.	.	PASS	END=65775614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	65775615	.	A	.	.	PASS	END=65775621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	65830316	.	A	.	.	PASS	END=65830317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:75:60
chr1	65830318	.	G	.	.	PASS	END=65830323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:81:60
chr1	65830324	.	C	.	.	PASS	END=65830325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:72:60
chr1	65830326	.	T	.	.	PASS	END=65830344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	65830345	.	G	.	.	PASS	END=65830403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	65830404	.	C	.	.	PASS	END=65830470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	65831543	.	G	.	.	PASS	END=65831574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	65831575	.	A	.	.	PASS	END=65831639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	65831640	.	C	.	.	PASS	END=65831642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	65831729	.	A	.	.	PASS	END=65831830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	65831831	.	A	.	.	PASS	END=65831837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	65831838	.	C	.	.	PASS	END=65831845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	65831846	.	T	.	.	PASS	END=65831870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	65831871	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:60:60
chr1	65831872	.	A	.	.	PASS	END=65831881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	65845083	.	A	.	.	PASS	END=65845133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	65845134	.	T	.	.	PASS	END=65845167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	65845168	.	A	.	.	PASS	END=65845206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	65845207	.	G	.	.	PASS	END=65845209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	65849874	.	A	.	.	PASS	END=65849890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	65849891	.	T	.	.	PASS	END=65849928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	65849929	.	T	.	.	PASS	END=65849975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	65849976	.	G	.	.	PASS	END=65850011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	65851393	.	A	.	.	PASS	END=65851405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	65851406	.	A	.	.	PASS	END=65851445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	65851446	.	C	.	.	PASS	END=65851552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	65851553	.	A	.	.	PASS	END=65851591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	65852493	.	A	.	.	PASS	END=65852543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	65852544	.	G	.	.	PASS	END=65852571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	65852572	.	A	.	.	PASS	END=65852614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	65854009	.	G	.	.	PASS	END=65854032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	65854033	.	G	.	.	PASS	END=65854108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	65854937	.	A	.	.	PASS	END=65854945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	65854946	.	T	.	.	PASS	END=65855000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	65855001	.	A	.	.	PASS	END=65855134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	65855221	.	G	.	.	PASS	END=65855320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	65858112	.	A	.	.	PASS	END=65858150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	65858151	.	C	T	1878.43	PASS	BaseQRankSum=3.155;DP=150;Dels=0.00;FS=2.411;HRun=0;HaplotypeScore=15.3594;MQ=60;MQ0=0;MQRankSum=0.136;QD=12.52;ReadPosRankSum=-1.932;SB=-618.49	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:83,66:150:99:1908,0,2316:60:99:0.443
chr1	65858152	.	G	.	.	PASS	END=65858241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	65858242	.	C	.	.	PASS	END=65858287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	65858288	.	C	.	.	PASS	END=65858329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	65858330	.	C	.	.	PASS	END=65858368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	65858369	.	C	.	.	PASS	END=65858476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	65858477	.	C	.	.	PASS	END=65858518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	65858519	.	C	.	.	PASS	END=65858545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	65858546	.	A	.	.	PASS	END=65858550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	65860579	.	A	.	.	PASS	END=65860627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	65860628	.	G	.	.	PASS	END=65860659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	65860660	.	T	C	1022.08	PASS	BaseQRankSum=1.010;DP=117;Dels=0.00;FS=0.745;HRun=0;HaplotypeScore=11.4559;MQ=60;MQ0=0;MQRankSum=0.339;QD=8.74;ReadPosRankSum=0.452;SB=-503.60	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:72,44:117:99:1052,0,1787:60:99:0.379
chr1	65860661	.	G	.	.	PASS	END=65860686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	65860687	.	A	C	909.88	PASS	BaseQRankSum=-1.038;DP=100;Dels=0.00;FS=1.732;HRun=2;HaplotypeScore=7.6281;MQ=60;MQ0=0;MQRankSum=0.039;QD=9.10;ReadPosRankSum=1.066;SB=-427.49	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:60,40:100:99:940,0,1646:60:99:0.400
chr1	65860688	.	A	.	.	PASS	END=65860717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	65864481	.	T	.	.	PASS	END=65864504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	65864505	.	C	.	.	PASS	END=65864569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	65864570	.	A	.	.	PASS	END=65864580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	65867442	.	A	.	.	PASS	END=65867518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:96:60
chr1	65867519	.	G	A	513.52	PASS	BaseQRankSum=0.185;DP=61;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=5.6815;MQ=60;MQ0=0;MQRankSum=-0.908;QD=8.42;ReadPosRankSum=-0.332;SB=-335.46	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:37,24:61:99:544,0,1012:60:99:0.393
chr1	65867520	.	C	.	.	PASS	END=65867571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:79:60
chr1	65867572	.	T	.	.	PASS	END=65867600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	65867601	.	T	.	.	PASS	END=65867611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	65871551	.	A	.	.	PASS	END=65871647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	65871648	.	A	.	.	PASS	END=65871793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	65871794	.	T	.	.	PASS	END=65871818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	65874322	.	A	.	.	PASS	END=65874360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	65874361	.	C	.	.	PASS	END=65874467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	65874468	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:72:99:60
chr1	65876931	.	A	.	.	PASS	END=65877059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	65877060	.	A	.	.	PASS	END=65877083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	65877084	.	C	.	.	PASS	END=65877108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	65877109	.	A	.	.	PASS	END=65877111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	65878605	.	A	.	.	PASS	END=65878618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	65878619	.	C	.	.	PASS	END=65878710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	65886306	.	G	.	.	LowGQX	END=65886465	GT	./.
chr1	65887071	.	G	.	.	LowGQX	END=65887170	GT	./.
chr1	65890914	.	A	.	.	LowGQX	END=65890951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65890952	.	T	.	.	LowGQX	END=65891073	GT	./.
chr1	65893426	.	G	.	.	LowGQX	END=65893525	GT	./.
chr1	65895543	.	A	.	.	LowGQX	END=65895733	GT	./.
chr1	65897484	.	A	.	.	LowGQX	END=65897497	GT	./.
chr1	65897498	.	G	.	.	LowGQX	END=65897499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65897500	.	C	.	.	LowGQX	.	GT	./.
chr1	65897501	.	T	.	.	LowGQX	END=65897507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65897508	.	T	.	.	LowGQX	END=65897509	GT	./.
chr1	65897510	.	G	.	.	LowGQX	END=65897516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65897517	.	C	.	.	LowGQX	.	GT	./.
chr1	65897518	.	A	.	.	LowGQX	END=65897527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65897528	.	G	.	.	LowGQX	.	GT	./.
chr1	65897529	.	T	.	.	LowGQX	END=65897531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65897532	.	T	.	.	LowGQX	.	GT	./.
chr1	65897533	.	T	.	.	LowGQX	END=65897536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65897537	.	C	.	.	LowGQX	END=65897539	GT	./.
chr1	65897540	.	A	.	.	LowGQX	END=65897549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65897550	.	G	.	.	LowGQX	.	GT	./.
chr1	65897551	.	G	.	.	LowGQX	END=65897556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65897557	.	C	.	.	LowGQX	END=65897558	GT	./.
chr1	65897559	.	T	.	.	LowGQX	END=65897561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65897562	.	T	.	.	LowGQX	END=65897564	GT	./.
chr1	65897565	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65897566	.	T	.	.	LowGQX	.	GT	./.
chr1	65897567	.	G	.	.	LowGQX	END=65897573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65897574	.	G	.	.	LowGQX	.	GT	./.
chr1	65897575	.	A	.	.	LowGQX	END=65897577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65897578	.	T	.	.	LowGQX	.	GT	./.
chr1	65897579	.	G	.	.	LowGQX	END=65897582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65897583	.	T	.	.	LowGQX	.	GT	./.
chr1	65897584	.	T	.	.	LowGQX	END=65897586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65897587	.	C	.	.	LowGQX	END=65897588	GT	./.
chr1	65897589	.	G	.	.	LowGQX	END=65897597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	65897598	.	G	.	.	LowGQX	.	GT	./.
chr1	65897599	.	G	.	.	LowGQX	END=65897601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	65897602	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	65897603	.	C	.	.	LowGQX	.	GT	./.
chr1	65897604	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	66031198	.	T	.	.	PASS	END=66031240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	66031241	.	G	.	.	PASS	END=66031300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	66031301	.	C	.	.	PASS	END=66031339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	66036105	.	C	.	.	PASS	END=66036136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	66036137	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:30:60
chr1	66036138	.	T	.	.	PASS	END=66036165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	66036166	.	T	.	.	PASS	END=66036175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	66036176	.	G	.	.	PASS	END=66036188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	66036189	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:60:60
chr1	66036190	.	A	.	.	PASS	END=66036194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	66036195	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:64:60
chr1	66036196	.	A	.	.	PASS	END=66036239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	66036240	.	C	.	.	PASS	END=66036258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	66036259	.	T	.	.	PASS	END=66036325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	66036326	.	A	.	.	PASS	END=66036370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	66036371	.	A	.	.	PASS	END=66036393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	66036394	.	T	.	.	PASS	END=66036409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	66036410	.	T	.	.	PASS	END=66036428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	66036429	.	A	.	.	PASS	END=66036434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	66036435	.	A	.	.	PASS	END=66036440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	66036441	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:2:60
chr1	66036442	.	G	.	.	PASS	END=66036481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	66036482	.	A	.	.	PASS	END=66036490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	66036491	.	C	.	.	PASS	END=66036500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	66036501	.	G	T	435.59	SB	DP=12;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=36.30;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,12:12:36.12:469,36,0:60:36:1.000
chr1	66036502	.	T	.	.	PASS	END=66036511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	66036512	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	66036513	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	66036514	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	66036515	.	G	.	.	PASS	END=66036527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	66036528	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	66036529	.	A	.	.	PASS	END=66036536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	66037958	.	A	.	.	PASS	END=66037973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:59
chr1	66037973	.	GT	G	112.15	LowQD	BaseQRankSum=3.262;DP=59;FS=0.000;HRun=27;HaplotypeScore=421.0048;MQ=59;MQ0=0;MQRankSum=-1.071;QD=1.90;ReadPosRankSum=-0.084;SB=-13.03	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,11:59:99:151,0,293:59:99:0.200
chr1	66037974	.	T	.	162.40	LowQD	DP=71;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:56:56:99:59:99
chr1	66037975	.	T	.	.	PASS	END=66037983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:59
chr1	66037984	.	T	G	210.52	SB	BaseQRankSum=-2.721;DP=70;Dels=0.00;FS=16.414;HRun=0;HaplotypeScore=41.1285;MQ=59;MQ0=0;MQRankSum=-0.662;QD=3.01;ReadPosRankSum=0.760;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:45,25:70:99:241,0,1083:59:99:0.357
chr1	66037985	.	T	G	3.77	LowGQX;LowQD;SB	BaseQRankSum=-1.439;DP=70;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=26.6309;MQ=59;MQ0=0;MQRankSum=0.193;QD=0.05;ReadPosRankSum=3.299;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:61,9:70:31.40:31,0,1556:59:4:0.129
chr1	66037986	.	T	.	.	PASS	END=66038000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:77:59
chr1	66038001	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:64:69:60
chr1	66038002	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:64:99:60
chr1	66038003	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:69:60
chr1	66038004	.	T	.	.	PASS	END=66038005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:90:60
chr1	66038006	.	C	.	63.10	PASS	DP=56;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:34:56:33.10:60:33
chr1	66038007	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:66:60
chr1	66038008	.	G	.	72.12	PASS	DP=60;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:48:60:42.13:60:42
chr1	66038009	.	A	.	.	PASS	END=66038010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:72:60
chr1	66038011	.	G	.	.	PASS	END=66038012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:54:60
chr1	66038013	.	A	.	.	PASS	END=66038017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:84:60
chr1	66038018	.	G	.	.	PASS	END=66038027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	66038028	.	G	.	.	PASS	END=66038084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	66038085	.	G	.	.	PASS	END=66038169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	66038170	.	C	.	.	PASS	END=66038183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	66058289	.	T	.	.	PASS	END=66058327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	66058328	.	T	.	.	PASS	END=66058331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	66058332	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:30:60
chr1	66058333	.	A	.	.	PASS	END=66058338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	66058339	.	G	.	.	PASS	END=66058377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	66058378	.	A	.	.	PASS	END=66058399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	66058400	.	C	.	.	PASS	END=66058431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	66058432	.	G	.	.	PASS	END=66058500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	66058501	.	G	.	.	PASS	END=66058550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	66058551	.	A	.	.	PASS	END=66058576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:91:60
chr1	66058577	.	A	.	.	PASS	END=66058599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	66062080	.	A	.	.	PASS	END=66062098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	66062099	.	G	.	.	PASS	END=66062104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	66062105	.	A	.	.	PASS	END=66062122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	66062123	.	T	.	.	PASS	END=66062128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	66062129	.	A	.	.	PASS	END=66062144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	66062145	.	C	.	.	PASS	END=66062166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	66062167	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:60:60
chr1	66062168	.	C	.	.	PASS	END=66062229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	66062230	.	A	.	.	PASS	END=66062262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	66062263	.	C	.	.	PASS	END=66062289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	66062290	.	A	.	.	PASS	END=66062308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	66062309	.	T	.	.	PASS	END=66062324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	66062325	.	A	G	201.86	PASS	BaseQRankSum=-1.736;DP=23;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=-0.601;QD=8.78;ReadPosRankSum=0.467;SB=-30.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,9:23:99:232,0,374:60:99:0.409
chr1	66062326	.	C	.	.	PASS	END=66062327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	66064292	.	A	.	.	PASS	END=66064304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:59
chr1	66064305	.	A	.	.	PASS	END=66064315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	66064316	.	C	.	.	PASS	END=66064339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	66064340	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:42:60
chr1	66064341	.	A	.	.	PASS	END=66064445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:93:60
chr1	66064446	.	T	.	.	PASS	END=66064466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	66064467	.	C	.	.	PASS	END=66064477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	66064478	.	A	.	.	PASS	END=66064483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	66064484	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:24:60
chr1	66064485	.	A	.	.	PASS	END=66064487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:48:60
chr1	66064488	.	G	.	.	PASS	END=66064503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	66064504	.	C	.	.	PASS	END=66064507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	66064508	.	T	.	.	PASS	END=66064510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	66064511	.	T	.	.	LowGQX	END=66064512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:27:60
chr1	66064513	.	C	.	.	PASS	END=66064519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	66064520	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	66064521	.	G	.	.	PASS	END=66064537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	66064538	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	66067024	.	A	.	.	PASS	END=66067054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	66067055	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:72:60
chr1	66067056	.	C	.	.	PASS	END=66067066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	66067067	.	C	.	.	PASS	END=66067076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	66067077	.	G	.	.	PASS	END=66067107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	66067108	.	G	.	.	PASS	END=66067150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	66067151	.	A	.	.	PASS	END=66067165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	66067166	.	C	.	.	PASS	END=66067264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr1	66067265	.	T	.	.	PASS	END=66067316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	66067317	.	T	.	.	PASS	END=66067334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	66067335	.	C	.	.	PASS	END=66067370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	66067371	.	A	.	.	PASS	END=66067416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	66067475	.	A	.	.	PASS	END=66067593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	66067594	.	A	.	.	PASS	END=66067603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	66067604	.	A	.	.	PASS	END=66067645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	66067646	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:78:60
chr1	66067647	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:39:60
chr1	66067648	.	G	.	.	PASS	END=66067694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	66070670	.	T	.	.	PASS	END=66070671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	66070672	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	66070673	.	T	.	.	PASS	END=66070683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	66070684	.	A	.	.	PASS	END=66070686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	66070687	.	G	.	.	PASS	END=66070701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	66070702	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:60
chr1	66070703	.	T	.	.	PASS	END=66070711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	66070712	.	C	.	.	PASS	END=66070723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	66070724	.	C	.	.	PASS	END=66070725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	66070726	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:93:60
chr1	66070727	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:48:60
chr1	66070728	.	C	.	.	PASS	END=66070747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:82:60
chr1	66070748	.	A	.	.	PASS	END=66070764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	66070765	.	C	.	.	PASS	END=66070823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	66070824	.	A	.	.	PASS	END=66070876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	66070877	.	T	.	.	PASS	END=66070900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	66070901	.	T	.	.	PASS	END=66070930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	66070931	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:73:60
chr1	66070932	.	T	.	.	PASS	END=66070933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	66070934	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:69:60
chr1	66070935	.	G	.	.	PASS	END=66070948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	66070949	.	T	.	.	PASS	END=66070954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	66070955	.	A	.	.	PASS	END=66070956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	66070957	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:39:60
chr1	66070958	.	A	.	.	PASS	END=66070971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	66074385	.	A	.	.	PASS	END=66074409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	66074410	.	C	.	.	PASS	END=66074445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	66074446	.	G	.	.	PASS	END=66074545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	66074546	.	A	.	.	PASS	END=66074587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	66074588	.	C	.	.	PASS	END=66074602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	66074603	.	T	.	.	PASS	END=66074635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	66075579	.	G	.	.	PASS	END=66075593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	66075594	.	G	.	.	PASS	END=66075618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	66075619	.	T	.	.	PASS	END=66075723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	66075724	.	T	.	.	PASS	END=66075754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	66075755	.	C	.	.	PASS	END=66075840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	66075846	.	T	.	.	PASS	END=66075895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	66075896	.	G	.	.	PASS	END=66075902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	66075903	.	T	.	.	PASS	END=66075951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	66075952	.	G	C	961.77	PASS	BaseQRankSum=1.477;DP=117;Dels=0.00;FS=1.687;HRun=0;HaplotypeScore=8.5223;MQ=60;MQ0=0;MQRankSum=-0.285;QD=8.22;ReadPosRankSum=-1.113;SB=-489.79	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:75,40:117:99:992,0,1913:60:99:0.348
chr1	66075953	.	G	.	.	PASS	END=66076014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	66076015	.	T	.	.	PASS	END=66076030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	66081640	.	T	.	.	PASS	END=66081661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	66081662	.	A	.	.	PASS	END=66081692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	66081693	.	C	.	.	PASS	END=66081720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:96:60
chr1	66081721	.	G	.	.	PASS	END=66081752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	66081753	.	C	.	.	PASS	END=66081823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	66081824	.	A	.	.	PASS	END=66081862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	66081863	.	C	.	.	PASS	END=66081885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	66081886	.	T	.	.	PASS	END=66081896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	66081897	.	T	.	.	PASS	END=66081906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	66081907	.	G	.	.	PASS	END=66081915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	66081916	.	A	.	.	PASS	END=66081929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	66081930	.	A	.	.	PASS	END=66081931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr1	66081932	.	T	.	.	PASS	END=66081936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	66081937	.	T	.	.	PASS	END=66081939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	66081940	.	C	.	.	PASS	END=66081945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	66081946	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:36:60
chr1	66081947	.	A	.	.	PASS	END=66081956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	66081957	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:21:60
chr1	66081958	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:42:60
chr1	66083596	.	G	.	.	PASS	END=66083632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	66083633	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:73:60
chr1	66083634	.	C	.	.	PASS	END=66083662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:78:60
chr1	66083663	.	A	.	.	PASS	END=66083675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	66083676	.	C	.	.	PASS	END=66083739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	66083740	.	A	.	.	PASS	END=66083824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	66083825	.	C	.	.	PASS	END=66083838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	66083839	.	C	.	.	PASS	END=66083854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:90:60
chr1	66083855	.	T	.	.	PASS	END=66083858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	66083859	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:51:60
chr1	66083860	.	T	.	.	PASS	END=66083880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:75:60
chr1	66085560	.	C	.	.	PASS	END=66085573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	66085574	.	T	A	464.61	PASS	BaseQRankSum=-0.504;DP=56;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.9363;MQ=60;MQ0=0;MQRankSum=0.436;QD=8.30;ReadPosRankSum=-0.128;SB=-211.83	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:36,20:56:99:495,0,947:60:99:0.357
chr1	66085575	.	T	.	.	PASS	END=66085627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	66085628	.	G	.	.	PASS	END=66085666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	66085667	.	G	.	.	PASS	END=66085710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:60
chr1	66085711	.	A	.	.	PASS	END=66085743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	66085744	.	T	.	.	PASS	END=66085751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	66085752	.	T	.	.	PASS	END=66085757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	66086985	.	A	.	.	PASS	END=66087011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	66087012	.	G	.	.	PASS	END=66087043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	66087044	.	G	.	.	PASS	END=66087057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	66087058	.	T	.	.	PASS	END=66087118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	66087119	.	A	.	.	PASS	END=66087162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	66087163	.	A	.	.	PASS	END=66087169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	66087170	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:42:60
chr1	66087171	.	G	.	.	PASS	END=66087192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	66088538	.	T	.	.	PASS	END=66088555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:69:60
chr1	66088556	.	C	.	.	PASS	END=66088569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	66088570	.	C	.	.	PASS	END=66088571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	66088572	.	C	.	.	PASS	END=66088581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	66088582	.	T	.	.	PASS	END=66088700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	66088701	.	C	A	756.26	PASS	BaseQRankSum=3.777;DP=50;Dels=0.00;FS=20.460;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.553;QD=15.13;ReadPosRankSum=1.078;SB=-131.47	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:24,26:50:99:786,0,572:60:99:0.520
chr1	66088702	.	G	.	.	PASS	END=66088705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	66091740	.	A	.	.	PASS	END=66091768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	66091769	.	G	.	.	PASS	END=66091843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	66091844	.	G	.	.	PASS	END=66091853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	66094973	.	T	.	.	LowGQX	END=66095072	GT	./.
chr1	66095873	.	C	.	.	PASS	END=66095944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:59
chr1	66095945	.	G	.	.	PASS	END=66095971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:56
chr1	66095972	.	G	.	.	PASS	END=66095985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:55
chr1	66095986	.	G	.	.	PASS	END=66096038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:51
chr1	66096039	.	T	.	.	PASS	END=66096050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:48
chr1	66096051	.	C	.	.	PASS	END=66096088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:46
chr1	66098784	.	T	.	.	PASS	END=66098825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	66098826	.	T	.	.	PASS	END=66098886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	66098887	.	T	.	.	PASS	END=66098904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	66098905	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:39:60
chr1	66098906	.	T	.	.	PASS	END=66098913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	66101823	.	A	.	.	PASS	END=66101878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	66101879	.	A	.	.	PASS	END=66101888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	66101889	.	C	.	.	PASS	END=66101901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	66101902	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:66:60
chr1	66101903	.	G	.	.	PASS	END=66101909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:84:60
chr1	66101910	.	G	.	.	PASS	END=66101919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	66101920	.	C	.	.	PASS	END=66101959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	66101960	.	A	.	.	PASS	END=66101970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	66101971	.	T	.	.	PASS	END=66102016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	66102017	.	G	.	.	PASS	END=66102034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	66102035	.	A	.	.	PASS	END=66102145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	66102146	.	C	.	.	PASS	END=66102255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	66102256	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:153:99:60
chr1	66102257	.	G	A	1951.47	PASS	BaseQRankSum=3.039;DP=154;Dels=0.00;FS=0.621;HRun=0;HaplotypeScore=15.2357;MQ=60;MQ0=0;MQRankSum=-0.138;QD=12.67;ReadPosRankSum=-0.499;SB=-1085.05	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:81,73:154:99:1981,0,2059:60:99:0.474
chr1	66102258	.	T	.	.	PASS	END=66102288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	66102289	.	A	.	.	PASS	END=66102330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	66102331	.	C	.	.	PASS	END=66102404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	66102405	.	G	.	.	PASS	END=66102482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	66102483	.	A	.	.	PASS	END=66102503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	66102504	.	T	.	.	PASS	END=66102544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	66102545	.	T	.	.	PASS	END=66102554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	66102555	.	A	.	.	PASS	END=66102561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	66102562	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:52:60
chr1	66102563	.	A	.	.	PASS	END=66102566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	66102567	.	T	.	.	PASS	END=66102583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	66102584	.	C	.	.	PASS	END=66102598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	66102599	.	T	.	.	PASS	END=66102602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	66102603	.	A	.	.	PASS	END=66102619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	66102620	.	T	.	.	PASS	END=66102624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	66102625	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:33:60
chr1	66102626	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:48:60
chr1	66102627	.	C	.	.	PASS	END=66102638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	66102639	.	A	.	.	PASS	END=66102643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	66102644	.	T	.	.	PASS	END=66102651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	66102652	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	66102653	.	G	.	.	PASS	END=66102655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	66102656	.	T	.	.	PASS	END=66102669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	66102670	.	A	.	.	LowGQX	END=66102671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	66102672	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	66102673	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	66102674	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:0:60
chr1	66102675	.	A	.	.	PASS	END=66102682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	66102683	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	66102684	.	G	.	.	PASS	END=66102685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	66102686	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	66102687	.	C	.	.	PASS	END=66102690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	66102691	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	66102692	.	T	.	.	PASS	END=66102693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	66102694	.	T	.	.	LowGQX	END=66102713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	66102714	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	66102715	.	T	.	.	LowGQX	END=66102731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	66102732	.	A	.	.	LowGQX	END=66102740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	66102741	.	A	.	.	LowGQX	END=66102743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	66102744	.	A	.	.	LowGQX	END=66102749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	66378969	.	C	.	.	PASS	END=66379013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	66379014	.	G	.	.	PASS	END=66379068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	66384278	.	A	.	.	PASS	END=66384465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	66384466	.	C	.	.	PASS	END=66384501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	66384502	.	A	.	.	PASS	END=66384520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	66458588	.	A	.	.	PASS	END=66458723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	66458724	.	T	.	.	PASS	END=66458776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	66458777	.	T	.	.	PASS	END=66458822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	66458823	.	A	.	.	PASS	END=66458827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	66618164	.	G	.	.	LowGQX	END=66618166	GT	./.
chr1	66618167	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	66618168	.	T	.	.	LowGQX	.	GT	./.
chr1	66618169	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	66618170	.	G	.	.	LowGQX	.	GT	./.
chr1	66618171	.	A	.	.	LowGQX	END=66618175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	66618176	.	A	.	.	LowGQX	.	GT	./.
chr1	66618177	.	G	.	.	LowGQX	END=66618179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	66618180	.	T	.	.	LowGQX	.	GT	./.
chr1	66618181	.	C	.	.	LowGQX	END=66618184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	66618185	.	C	.	.	LowGQX	END=66618186	GT	./.
chr1	66618187	.	T	.	.	LowGQX	END=66618189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	66618190	.	T	.	.	LowGQX	.	GT	./.
chr1	66618191	.	T	.	.	LowGQX	END=66618209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	66618210	.	G	.	.	LowGQX	.	GT	./.
chr1	66618211	.	A	.	.	LowGQX	END=66618212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	66618213	.	G	.	.	LowGQX	END=66618214	GT	./.
chr1	66618215	.	G	.	.	LowGQX	END=66618217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	66618218	.	A	.	.	LowGQX	END=66618219	GT	./.
chr1	66618220	.	G	.	.	LowGQX	END=66618229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	66618230	.	A	.	.	LowGQX	.	GT	./.
chr1	66618231	.	T	.	.	LowGQX	END=66618237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	66618238	.	A	.	.	LowGQX	END=66618263	GT	./.
chr1	66713141	.	A	.	.	PASS	END=66713215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	66713216	.	G	.	.	PASS	END=66713303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr1	66713304	.	C	.	.	PASS	END=66713339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	66723091	.	A	.	.	PASS	END=66723100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	66723101	.	A	.	.	PASS	END=66723117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	66723118	.	A	.	.	PASS	END=66723161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	66723162	.	C	.	.	PASS	END=66723190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:89:60
chr1	66723299	.	T	.	.	PASS	END=66723384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	66723385	.	C	.	.	PASS	END=66723398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	66723462	.	C	.	.	PASS	END=66723523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	66723524	.	A	.	.	PASS	END=66723561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	66731714	.	T	.	.	PASS	END=66731793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	66731794	.	C	.	.	PASS	END=66731813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	66732335	.	C	.	.	LowGQX	END=66732434	GT	./.
chr1	66798071	.	T	.	.	PASS	END=66798107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	66798108	.	A	.	.	PASS	END=66798130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	66798131	.	C	.	.	PASS	END=66798283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	66798284	.	G	.	.	PASS	END=66798305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	66820504	.	G	.	.	LowGQX	END=66820603	GT	./.
chr1	66821207	.	C	.	.	PASS	END=66821226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	66821227	.	C	.	.	PASS	END=66821243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	66821244	.	T	.	.	PASS	END=66821306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	66827296	.	A	.	.	PASS	END=66827299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	66827300	.	A	.	.	PASS	END=66827311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	66827312	.	G	.	.	PASS	END=66827322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	66827323	.	A	.	.	PASS	END=66827392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	66827393	.	A	.	.	PASS	END=66827427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	66827428	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:46:15:60
chr1	66827429	.	A	.	.	PASS	END=66827478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	66828849	.	A	.	.	PASS	END=66828951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	66829088	.	A	.	.	PASS	END=66829216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	66829217	.	A	.	.	PASS	END=66829255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	66829256	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:106:99:60
chr1	66831348	.	A	.	.	PASS	END=66831369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	66831370	.	G	A	5224.15	PASS	BaseQRankSum=1.047;DP=172;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=-1.712;QD=30.37;ReadPosRankSum=-0.624;SB=-2486.09	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,171:172:99:5224,364,0:60:99:0.994
chr1	66831371	.	A	.	.	PASS	END=66831451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	66833377	.	A	.	.	PASS	END=66833403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	66833404	.	T	.	.	PASS	END=66833535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	66833624	.	A	.	.	PASS	END=66833740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	66833741	.	G	.	.	PASS	END=66833750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	66834468	.	A	.	.	PASS	END=66834480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	66834481	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:84:60
chr1	66834482	.	A	.	.	PASS	END=66834496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	66834497	.	G	.	.	PASS	END=66834632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	66834633	.	C	.	.	PASS	END=66834654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	66837994	.	A	.	.	PASS	END=66838022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	66838023	.	C	.	.	PASS	END=66838108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	66838109	.	G	.	.	PASS	END=66838151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	66838152	.	A	.	.	PASS	END=66838204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:60
chr1	66838205	.	T	.	.	PASS	END=66838312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:60
chr1	66838313	.	G	.	.	PASS	END=66838335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	66838336	.	A	.	.	PASS	END=66838356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	66838357	.	C	.	.	PASS	END=66838363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	66999997	.	G	.	.	LowGQX	END=66999999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67000000	.	T	.	.	LowGQX	END=67000001	GT	./.
chr1	67000002	.	T	.	.	LowGQX	END=67000006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67000007	.	A	.	.	LowGQX	.	GT	./.
chr1	67000008	.	C	.	.	LowGQX	END=67000020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67000021	.	A	.	.	LowGQX	.	GT	./.
chr1	67000022	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67000023	.	G	.	.	LowGQX	.	GT	./.
chr1	67000024	.	G	.	.	LowGQX	END=67000051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67000052	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	67000053	.	T	.	.	LowGQX	END=67000057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	67000058	.	T	.	.	LowGQX	END=67000059	GT	./.
chr1	67000060	.	C	.	.	LowGQX	END=67000096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	67091512	.	T	.	.	LowGQX	END=67091611	GT	./.
chr1	67098661	.	G	.	.	LowGQX	END=67098815	GT	./.
chr1	67099755	.	C	.	.	LowGQX	END=67099854	GT	./.
chr1	67101613	.	A	.	.	LowGQX	END=67101712	GT	./.
chr1	67105388	.	G	.	.	LowGQX	END=67105512	GT	./.
chr1	67105513	.	A	.	.	LowGQX	END=67105524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67105525	.	C	.	.	LowGQX	.	GT	./.
chr1	67105526	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67105527	.	G	.	.	LowGQX	.	GT	./.
chr1	67105528	.	A	.	.	LowGQX	END=67105531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67105532	.	G	.	.	LowGQX	.	GT	./.
chr1	67105533	.	T	.	.	LowGQX	END=67105534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67105535	.	T	.	.	LowGQX	.	GT	./.
chr1	67105536	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67105537	.	T	.	.	LowGQX	.	GT	./.
chr1	67105538	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67108471	.	C	.	.	LowGQX	END=67108491	GT	./.
chr1	67108492	.	G	.	.	LowGQX	END=67108570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67109195	.	G	.	.	LowGQX	END=67109404	GT	./.
chr1	67125712	.	A	.	.	LowGQX	END=67125871	GT	./.
chr1	67126152	.	T	.	.	LowGQX	END=67126251	GT	./.
chr1	67131893	.	A	.	.	LowGQX	END=67132441	GT	./.
chr1	67133169	.	C	.	.	LowGQX	END=67133232	GT	./.
chr1	67133233	.	T	.	.	LowGQX	END=67133235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67133236	.	C	.	.	LowGQX	.	GT	./.
chr1	67133237	.	A	.	.	LowGQX	END=67133239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67133240	.	A	.	.	LowGQX	END=67133241	GT	./.
chr1	67133242	.	T	.	.	LowGQX	END=67133243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67133244	.	T	.	.	LowGQX	.	GT	./.
chr1	67133245	.	T	.	.	LowGQX	END=67133248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67133249	.	T	.	.	LowGQX	END=67133250	GT	./.
chr1	67133251	.	A	.	.	LowGQX	END=67133253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67133254	.	C	.	.	LowGQX	.	GT	./.
chr1	67133255	.	A	.	.	LowGQX	END=67133256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67133257	.	G	.	.	LowGQX	.	GT	./.
chr1	67133258	.	T	.	.	LowGQX	END=67133259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67133260	.	T	.	.	LowGQX	.	GT	./.
chr1	67133261	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67133262	.	G	.	.	LowGQX	END=67133264	GT	./.
chr1	67133265	.	A	.	.	LowGQX	END=67133268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67136641	.	T	.	.	LowGQX	END=67136740	GT	./.
chr1	67137603	.	A	.	.	LowGQX	END=67137606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67137607	.	T	.	.	LowGQX	.	GT	./.
chr1	67137608	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67137609	.	C	.	.	LowGQX	.	GT	./.
chr1	67137610	.	T	.	.	LowGQX	END=67137630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67137631	.	A	.	.	LowGQX	.	GT	./.
chr1	67137632	.	G	.	.	LowGQX	END=67137649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67137650	.	C	.	.	LowGQX	.	GT	./.
chr1	67137651	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67137652	.	T	.	.	LowGQX	.	GT	./.
chr1	67137653	.	T	.	.	LowGQX	END=67137675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67137676	.	A	.	.	LowGQX	.	GT	./.
chr1	67137677	.	A	.	.	LowGQX	END=67137702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67138897	.	G	.	.	LowGQX	END=67139056	GT	./.
chr1	67142684	.	C	.	.	LowGQX	END=67142783	GT	./.
chr1	67145289	.	G	.	.	LowGQX	END=67145448	GT	./.
chr1	67147550	.	A	.	.	LowGQX	END=67147557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67147558	.	A	.	.	LowGQX	.	GT	./.
chr1	67147559	.	C	.	.	LowGQX	END=67147563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67147564	.	C	.	.	LowGQX	.	GT	./.
chr1	67147565	.	A	.	.	LowGQX	END=67147570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67147571	.	A	.	.	LowGQX	.	GT	./.
chr1	67147572	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67147573	.	A	.	.	LowGQX	.	GT	./.
chr1	67147574	.	G	.	.	LowGQX	END=67147575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67147576	.	T	.	.	LowGQX	.	GT	./.
chr1	67147577	.	C	.	.	LowGQX	END=67147592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67147593	.	C	.	.	LowGQX	.	GT	./.
chr1	67147594	.	C	.	.	LowGQX	END=67147596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67147597	.	C	.	.	LowGQX	END=67147674	GT	./.
chr1	67147675	.	T	.	.	LowGQX	END=67147679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67147680	.	T	.	.	LowGQX	.	GT	./.
chr1	67147681	.	T	.	.	LowGQX	END=67147704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67147705	.	T	.	.	LowGQX	END=67147706	GT	./.
chr1	67147707	.	A	.	.	LowGQX	END=67147737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67147738	.	T	.	.	LowGQX	.	GT	./.
chr1	67147739	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67147740	.	T	.	.	LowGQX	.	GT	./.
chr1	67147741	.	C	.	.	LowGQX	END=67147768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67147769	.	T	.	.	LowGQX	.	GT	./.
chr1	67147770	.	G	.	.	LowGQX	END=67147820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67147821	.	G	.	.	LowGQX	.	GT	./.
chr1	67147822	.	G	.	.	LowGQX	END=67147824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67147825	.	C	.	.	LowGQX	END=67148054	GT	./.
chr1	67149789	.	G	.	.	LowGQX	END=67149889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67154829	.	A	.	.	LowGQX	END=67154960	GT	./.
chr1	67155871	.	A	.	.	LowGQX	END=67156001	GT	./.
chr1	67160045	.	A	.	.	LowGQX	END=67160204	GT	./.
chr1	67161031	.	A	.	.	LowGQX	END=67161178	GT	./.
chr1	67184975	.	A	.	.	LowGQX	END=67185090	GT	./.
chr1	67194945	.	A	.	.	LowGQX	END=67195104	GT	./.
chr1	67199429	.	A	.	.	LowGQX	END=67199530	GT	./.
chr1	67199531	.	A	.	.	LowGQX	END=67199546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67199547	.	A	.	.	LowGQX	.	GT	./.
chr1	67199548	.	C	.	.	LowGQX	END=67199565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67205016	.	A	.	.	LowGQX	END=67205222	GT	./.
chr1	67206269	.	G	.	.	LowGQX	END=67206423	GT	./.
chr1	67206953	.	A	.	.	LowGQX	END=67207121	GT	./.
chr1	67208718	.	T	.	.	LowGQX	END=67208817	GT	./.
chr1	67220340	.	T	.	.	LowGQX	END=67220462	GT	./.
chr1	67236066	.	T	.	.	LowGQX	END=67236165	GT	./.
chr1	67236221	.	A	.	.	LowGQX	END=67236320	GT	./.
chr1	67241960	.	A	.	.	LowGQX	END=67242088	GT	./.
chr1	67242932	.	A	.	.	LowGQX	END=67242936	GT	./.
chr1	67242937	.	A	.	.	LowGQX	END=67242944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	67242945	.	C	.	.	LowGQX	.	GT	./.
chr1	67242946	.	C	.	.	LowGQX	END=67242981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	67242982	.	A	.	.	LowGQX	END=67243139	GT	./.
chr1	67263694	.	T	.	.	LowGQX	END=67263930	GT	./.
chr1	67266728	.	A	.	.	LowGQX	END=67266783	GT	./.
chr1	67266784	.	A	.	.	LowGQX	END=67266892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67266893	.	G	.	.	LowGQX	.	GT	./.
chr1	67266894	.	G	.	.	LowGQX	END=67266906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67279789	.	A	.	.	LowGQX	END=67279888	GT	./.
chr1	67288042	.	A	.	.	LowGQX	END=67288044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	67288045	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	67288046	.	G	.	.	LowGQX	END=67288105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67288106	.	T	.	.	LowGQX	END=67288109	GT	./.
chr1	67288110	.	T	.	.	LowGQX	END=67288202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67292501	.	A	.	.	LowGQX	END=67292731	GT	./.
chr1	67293493	.	A	.	.	LowGQX	END=67293595	GT	./.
chr1	67299266	.	A	.	.	LowGQX	END=67299391	GT	./.
chr1	67299672	.	A	.	.	LowGQX	END=67299861	GT	./.
chr1	67301307	.	A	.	.	LowGQX	.	GT	./.
chr1	67301308	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67301309	.	C	.	.	LowGQX	.	GT	./.
chr1	67301310	.	T	.	.	LowGQX	END=67301316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67301317	.	C	.	.	LowGQX	.	GT	./.
chr1	67301318	.	A	.	.	LowGQX	END=67301319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67301320	.	A	.	.	LowGQX	.	GT	./.
chr1	67301321	.	A	.	.	LowGQX	END=67301322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67301323	.	T	.	.	LowGQX	.	GT	./.
chr1	67301324	.	G	.	.	LowGQX	END=67301328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67301329	.	A	.	.	LowGQX	.	GT	./.
chr1	67301330	.	T	.	.	LowGQX	END=67301340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67301341	.	C	.	.	LowGQX	.	GT	./.
chr1	67301342	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67301343	.	G	.	.	LowGQX	.	GT	./.
chr1	67301344	.	T	.	.	LowGQX	END=67301367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67301368	.	A	.	.	LowGQX	.	GT	./.
chr1	67301369	.	T	.	.	LowGQX	END=67301379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67301380	.	A	.	.	LowGQX	END=67301462	GT	./.
chr1	67303335	.	T	.	.	LowGQX	END=67303514	GT	./.
chr1	67306150	.	A	.	.	LowGQX	END=67306200	GT	./.
chr1	67306201	.	A	.	.	LowGQX	END=67306288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67306289	.	A	.	.	LowGQX	.	GT	./.
chr1	67306290	.	T	.	.	LowGQX	END=67306312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67306313	.	T	.	.	LowGQX	.	GT	./.
chr1	67306314	.	T	.	.	LowGQX	END=67306351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67306352	.	G	.	.	LowGQX	END=67306356	GT	./.
chr1	67313155	.	T	.	.	LowGQX	END=67313363	GT	./.
chr1	67313851	.	G	.	.	LowGQX	END=67314010	GT	./.
chr1	67327828	.	A	.	.	LowGQX	END=67328017	GT	./.
chr1	67337029	.	A	.	.	LowGQX	END=67337194	GT	./.
chr1	67340462	.	A	.	.	LowGQX	END=67340622	GT	./.
chr1	67356763	.	A	.	.	LowGQX	END=67356962	GT	./.
chr1	67358910	.	A	.	.	LowGQX	END=67359089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67359090	.	C	.	.	LowGQX	END=67359098	GT	./.
chr1	67370862	.	C	.	.	LowGQX	END=67371060	GT	./.
chr1	67384747	.	C	.	.	LowGQX	END=67384846	GT	./.
chr1	67390323	.	G	.	.	LowGQX	END=67390516	GT	./.
chr1	67390635	.	A	.	.	LowGQX	END=67390850	GT	./.
chr1	67391824	.	G	.	.	LowGQX	END=67391925	GT	./.
chr1	67394560	.	T	.	.	LowGQX	END=67394582	GT	./.
chr1	67394583	.	T	.	.	LowGQX	END=67394659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67394784	.	T	.	.	LowGQX	END=67394823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67394824	.	T	.	.	LowGQX	END=67394883	GT	./.
chr1	67396030	.	C	.	.	LowGQX	END=67396129	GT	./.
chr1	67405674	.	A	.	.	LowGQX	END=67405773	GT	./.
chr1	67411801	.	T	.	.	LowGQX	END=67411993	GT	./.
chr1	67423740	.	A	.	.	LowGQX	END=67423766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	67423767	.	T	.	.	LowGQX	END=67423905	GT	./.
chr1	67424532	.	A	.	.	LowGQX	END=67424668	GT	./.
chr1	67425290	.	A	.	.	LowGQX	END=67425390	GT	./.
chr1	67425391	.	G	.	.	LowGQX	END=67425444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67428758	.	A	.	.	LowGQX	END=67428771	GT	./.
chr1	67428772	.	A	.	.	LowGQX	END=67428794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67428795	.	C	.	.	LowGQX	.	GT	./.
chr1	67428796	.	A	.	.	LowGQX	END=67428797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67428798	.	G	.	.	LowGQX	.	GT	./.
chr1	67428799	.	C	.	.	LowGQX	END=67428809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67428810	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	67428811	.	T	.	.	LowGQX	END=67428812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	67428813	.	G	.	.	LowGQX	.	GT	./.
chr1	67428814	.	G	.	.	LowGQX	END=67428843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	67428844	.	G	.	.	LowGQX	.	GT	./.
chr1	67428845	.	T	.	.	LowGQX	END=67428857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	67436489	.	A	.	.	LowGQX	END=67436668	GT	./.
chr1	67437276	.	G	.	.	LowGQX	END=67437428	GT	./.
chr1	67438578	.	A	.	.	LowGQX	END=67438677	GT	./.
chr1	67442276	.	A	.	.	LowGQX	END=67442407	GT	./.
chr1	67447460	.	A	.	.	LowGQX	END=67447603	GT	./.
chr1	67450253	.	A	.	.	LowGQX	END=67450392	GT	./.
chr1	67450393	.	A	.	.	LowGQX	END=67450491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67450492	.	G	.	.	LowGQX	END=67450585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	67452072	.	T	.	.	LowGQX	END=67452084	GT	./.
chr1	67452085	.	G	.	.	LowGQX	END=67452134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67452135	.	A	.	.	LowGQX	.	GT	./.
chr1	67452136	.	G	.	.	LowGQX	END=67452171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67469972	.	C	.	.	PASS	END=67470008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	67470009	.	A	.	.	PASS	END=67470031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	67470032	.	T	.	.	PASS	END=67470115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	67470116	.	C	.	.	PASS	END=67470169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	67470170	.	G	.	.	PASS	END=67470182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	67474050	.	G	.	.	LowGQX	END=67474149	GT	./.
chr1	67474717	.	A	.	.	PASS	END=67474742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	67474743	.	A	.	.	PASS	END=67474814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	67474815	.	A	.	.	PASS	END=67474838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	67474839	.	T	.	.	PASS	END=67474882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	67474883	.	A	.	.	PASS	END=67474893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	67474894	.	A	.	.	PASS	END=67474901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	67486001	.	C	.	.	PASS	END=67486074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	67486075	.	T	.	.	PASS	END=67486086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	67486087	.	A	.	.	PASS	END=67486104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	67486105	.	G	.	.	PASS	END=67486181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	67487162	.	T	.	.	PASS	END=67487246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	67487247	.	A	.	.	PASS	END=67487333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:61
chr1	67487334	.	A	.	.	PASS	END=67487336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:64
chr1	67507868	.	A	.	.	PASS	END=67507890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	67507891	.	C	.	.	PASS	END=67507965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	67507966	.	T	.	.	PASS	END=67507988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	67507989	.	A	.	.	PASS	END=67508018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:84:60
chr1	67508019	.	A	.	.	PASS	END=67508062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	67512897	.	T	.	.	PASS	END=67512902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	67512903	.	G	T	2565.70	PASS	DP=81;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.8938;MQ=60;MQ0=0;QD=31.68;SB=-1014.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,81:81:99:2599,199,0:60:99:1.000
chr1	67512904	.	C	.	.	PASS	END=67512911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	67512912	.	A	.	.	PASS	END=67512919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	67512920	.	A	C	4297.43	PASS	BaseQRankSum=0.509;DP=136;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=8.5750;MQ=60;MQ0=0;MQRankSum=1.172;QD=31.60;ReadPosRankSum=-0.841;SB=-1401.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,135:136:99:4297,298,0:60:99:0.993
chr1	67512921	.	C	.	.	PASS	END=67513051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	67513052	.	T	.	.	PASS	END=67513063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	67513064	.	G	.	.	PASS	END=67513076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	67513077	.	A	.	.	PASS	END=67513101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	67515414	.	T	.	.	PASS	END=67515430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	67515431	.	T	.	.	PASS	END=67515443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	67515444	.	A	.	.	PASS	END=67515451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	67515452	.	G	.	.	PASS	END=67515471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	67515472	.	C	.	.	PASS	END=67515532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	67515533	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:75:60
chr1	67515534	.	C	.	.	PASS	END=67515577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	67515578	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:62:60
chr1	67515579	.	C	.	.	PASS	END=67515584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	67516065	.	G	.	.	PASS	END=67516204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	67516205	.	A	.	.	PASS	END=67516238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	67517644	.	T	.	.	PASS	END=67517653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	67517654	.	A	.	.	PASS	END=67517658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	67517659	.	A	.	.	PASS	END=67517706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	67517707	.	G	.	.	PASS	END=67517747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	67517748	.	A	.	.	PASS	END=67517756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	67517757	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:62:60
chr1	67517758	.	A	.	.	PASS	END=67517803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	67518403	.	A	.	.	PASS	END=67518477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	67518478	.	G	.	.	PASS	END=67518495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	67518496	.	T	.	.	PASS	END=67518553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	67518554	.	A	.	.	PASS	END=67518631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	67518632	.	A	.	.	PASS	END=67518718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	67518719	.	T	.	.	PASS	END=67518725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	67519443	.	C	.	.	LowGQX	END=67519444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	67519445	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	67519446	.	C	.	.	LowGQX	END=67519447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	67519448	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	67519449	.	C	.	.	LowGQX	END=67519450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	67519451	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	67519452	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	67519453	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	67519454	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	67519455	.	C	.	.	LowGQX	END=67519465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	67519466	.	G	.	.	PASS	END=67519477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	67519478	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:2:60
chr1	67519479	.	C	.	.	PASS	END=67519485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	67519486	.	G	.	.	PASS	END=67519491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	67519492	.	A	.	.	PASS	END=67519496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	67519497	.	T	.	.	PASS	END=67519508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	67519509	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr1	67519510	.	C	.	.	PASS	END=67519520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	67519521	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:69:60
chr1	67519522	.	C	.	.	PASS	END=67519528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:75:60
chr1	67519529	.	G	.	.	PASS	END=67519559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	67519560	.	G	.	.	PASS	END=67519638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:82:60
chr1	67519639	.	A	.	.	PASS	END=67519663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	67519664	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:39:60
chr1	67519665	.	C	.	.	PASS	END=67519678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	67519679	.	T	.	.	PASS	END=67519682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:60:60
chr1	67519683	.	T	.	.	PASS	END=67519685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	67519686	.	A	.	.	PASS	END=67519689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	67519690	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:24:60
chr1	67519691	.	C	.	.	PASS	END=67519694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	67519695	.	A	.	.	PASS	END=67519708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:60
chr1	67519709	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:45:60
chr1	67519710	.	G	.	.	PASS	END=67519713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	67519714	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:33:60
chr1	67519715	.	G	.	.	PASS	END=67519717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	67519718	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:45:60
chr1	67519719	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:33:60
chr1	67519720	.	G	.	.	PASS	END=67519725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	67519726	.	G	.	.	PASS	END=67519728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	67519729	.	G	.	.	PASS	END=67519738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	67519739	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:36:60
chr1	67519740	.	C	.	.	PASS	END=67519747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	67558686	.	T	.	.	LowGQX	END=67559289	GT	./.
chr1	67560916	.	A	.	.	LowGQX	END=67561106	GT	./.
chr1	67561863	.	C	.	.	LowGQX	END=67562019	GT	./.
chr1	67568920	.	C	.	.	LowGQX	END=67569065	GT	./.
chr1	67577244	.	T	.	.	LowGQX	END=67577343	GT	./.
chr1	67579386	.	A	.	.	LowGQX	END=67579485	GT	./.
chr1	67580973	.	A	.	.	LowGQX	END=67581149	GT	./.
chr1	67591351	.	T	.	.	LowGQX	END=67591594	GT	./.
chr1	67592837	.	T	.	.	LowGQX	END=67592936	GT	./.
chr1	67633753	.	A	.	.	PASS	END=67633759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr1	67633760	.	A	.	.	PASS	END=67633768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	67633769	.	T	.	.	PASS	END=67633770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:39:60
chr1	67633771	.	C	.	.	PASS	END=67633783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	67633784	.	G	.	.	PASS	END=67633803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	67633804	.	A	.	.	PASS	END=67633811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	67633812	.	G	T	467.56	PASS	BaseQRankSum=1.781;DP=31;Dels=0.00;FS=1.599;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-0.420;QD=15.08;ReadPosRankSum=0.420;SB=-245.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,18:31:99:498,0,273:60:99:0.581
chr1	67633813	.	G	.	.	PASS	END=67633818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	67633819	.	A	.	.	PASS	END=67633833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	67633834	.	G	.	.	PASS	END=67633851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	67633852	.	C	.	.	PASS	END=67633924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr1	67634974	.	T	.	.	PASS	END=67635011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	67635012	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:36:60
chr1	67635013	.	A	.	.	PASS	END=67635032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	67635033	.	A	.	.	PASS	END=67635047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	67635048	.	G	.	.	PASS	END=67635054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	67635055	.	T	.	.	PASS	END=67635066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	67635067	.	C	.	.	PASS	END=67635091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	67635092	.	G	.	.	PASS	END=67635101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	67635102	.	A	.	.	PASS	END=67635117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	67635118	.	C	.	.	PASS	END=67635236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	67635237	.	C	.	.	PASS	END=67635252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	67635253	.	A	.	.	PASS	END=67635257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	67635258	.	A	.	.	PASS	END=67635264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	67635265	.	A	.	.	PASS	END=67635269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	67635270	.	C	.	.	PASS	END=67635301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	67635302	.	A	.	.	PASS	END=67635372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	67648468	.	G	.	.	PASS	END=67648493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	67648494	.	T	.	.	PASS	END=67648523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	67648524	.	C	.	.	PASS	END=67648637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	67648638	.	A	.	.	PASS	END=67648649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	67648650	.	A	.	.	PASS	END=67648678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:96:60
chr1	67648679	.	C	.	.	PASS	END=67648693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	67666369	.	A	.	.	PASS	END=67666402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	67666403	.	T	.	.	PASS	END=67666506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	67666507	.	G	.	.	PASS	END=67666553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	67666554	.	A	.	.	PASS	END=67666594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	67666595	.	A	.	.	PASS	END=67666631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	67672542	.	C	.	.	PASS	END=67672561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	67672562	.	C	.	.	PASS	END=67672566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	67672567	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	67672568	.	T	.	.	PASS	END=67672588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	67672589	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	67672590	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	67672591	.	A	.	.	PASS	END=67672592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	67672593	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:48:60
chr1	67672594	.	G	.	.	PASS	END=67672595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	67672596	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:51:60
chr1	67672597	.	A	.	.	PASS	END=67672599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	67672600	.	T	.	.	PASS	END=67672603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	67672604	.	G	.	.	PASS	END=67672605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	67672606	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:48:60
chr1	67672607	.	G	.	.	PASS	END=67672610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chr1	67672611	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:45:60
chr1	67672612	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr1	67672613	.	A	.	.	PASS	END=67672619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	67672620	.	G	.	.	PASS	END=67672623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	67672624	.	T	.	.	PASS	END=67672630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	67672631	.	A	.	.	PASS	END=67672644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	67672645	.	G	.	.	PASS	END=67672756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:82:60
chr1	67672757	.	A	.	.	PASS	END=67672768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	67672769	.	G	.	.	PASS	END=67672778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	67672779	.	G	.	.	PASS	END=67672785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	67672786	.	A	.	.	PASS	END=67672789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	67672808	.	G	.	.	PASS	END=67672811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	67672812	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:42:60
chr1	67672813	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:3:60
chr1	67672814	.	T	.	.	PASS	END=67672820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	67672821	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:39:60
chr1	67672822	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	67672823	.	C	.	.	PASS	END=67672828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	67672829	.	T	.	.	PASS	END=67672831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	67672832	.	A	.	.	PASS	END=67672843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	67672844	.	T	.	.	PASS	END=67672849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	67672850	.	T	.	.	PASS	END=67672865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	67672866	.	G	.	.	PASS	END=67672867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	67672868	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:3:60
chr1	67672869	.	A	.	.	PASS	END=67672891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	67672892	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:48:60
chr1	67672893	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:9:60
chr1	67672894	.	A	.	.	PASS	END=67672907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	67673231	.	T	.	.	LowGQX	END=67673330	GT	./.
chr1	67673331	.	A	.	.	LowGQX	END=67673332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67673333	.	C	.	.	LowGQX	.	GT	./.
chr1	67673334	.	C	.	.	LowGQX	END=67673335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67673336	.	T	.	.	LowGQX	.	GT	./.
chr1	67673337	.	T	.	.	LowGQX	END=67673338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67673339	.	G	.	.	LowGQX	END=67673340	GT	./.
chr1	67673341	.	C	.	.	LowGQX	END=67673347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67673348	.	C	.	.	LowGQX	.	GT	./.
chr1	67673349	.	A	.	.	LowGQX	END=67673353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67673354	.	T	.	.	LowGQX	.	GT	./.
chr1	67673355	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67673356	.	T	.	.	LowGQX	.	GT	./.
chr1	67673357	.	G	.	.	LowGQX	END=67673359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67673360	.	G	.	.	LowGQX	.	GT	./.
chr1	67673361	.	C	.	.	LowGQX	END=67673373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67673374	.	G	.	.	LowGQX	END=67673376	GT	./.
chr1	67673377	.	G	.	.	LowGQX	END=67673382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67673383	.	T	.	.	LowGQX	.	GT	./.
chr1	67673384	.	A	.	.	LowGQX	END=67673385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67673386	.	G	.	.	LowGQX	.	GT	./.
chr1	67673387	.	T	.	.	LowGQX	END=67673390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	67685206	.	A	.	.	PASS	END=67685230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	67685231	.	T	.	.	PASS	END=67685244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	67685245	.	C	.	.	PASS	END=67685265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	67685266	.	T	.	.	PASS	END=67685270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	67685271	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:60
chr1	67685272	.	A	.	.	PASS	END=67685277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	67685278	.	T	.	.	PASS	END=67685287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	67685288	.	T	.	.	PASS	END=67685341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	67685342	.	G	.	.	PASS	END=67685386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	67685387	.	T	C	2118.81	PASS	DP=74;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.9134;MQ=60;MQ0=0;QD=28.63;SB=-1114.75	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,73:74:99:2152,168,0:60:99:1.000
chr1	67685388	.	G	.	.	PASS	END=67685404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	67685405	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:73:70:60
chr1	67685406	.	T	.	.	PASS	END=67685442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	67685443	.	G	A	1858.80	PASS	DP=61;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=30.47;SB=-698.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,61:61:99:1892,141,0:60:99:1.000
chr1	67685444	.	G	.	.	PASS	END=67685464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	67702345	.	C	.	.	PASS	END=67702429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	67702430	.	C	.	.	PASS	END=67702468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	67702469	.	A	.	.	PASS	END=67702498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	67702499	.	A	.	.	PASS	END=67702514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	67702515	.	T	.	.	PASS	END=67702525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	67702526	.	T	G	459.57	SB	BaseQRankSum=0.298;DP=24;Dels=0.00;FS=4.260;HRun=1;HaplotypeScore=2.8912;MQ=60;MQ0=0;MQRankSum=0.537;QD=19.15;ReadPosRankSum=-0.954;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:9,15:24:99:490,0,248:60:99:0.625
chr1	67702527	.	A	.	.	PASS	END=67702536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	67705811	.	T	.	.	PASS	END=67705858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	67705859	.	T	.	.	PASS	END=67705935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	67705936	.	G	.	.	PASS	END=67705957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	67705958	.	G	A	1101.75	PASS	BaseQRankSum=4.922;DP=66;Dels=0.00;FS=6.090;HRun=2;HaplotypeScore=2.8935;MQ=60;MQ0=0;MQRankSum=-0.078;QD=16.69;ReadPosRankSum=-0.090;SB=-212.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:29,37:66:99:1132,0,719:60:99:0.561
chr1	67705959	.	A	.	.	PASS	END=67706009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	67706010	.	T	.	.	PASS	END=67706012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	67706013	.	G	.	.	PASS	END=67706015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	67721469	.	A	.	.	PASS	END=67721471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	67721472	.	T	.	.	PASS	END=67721540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	67721541	.	G	.	.	PASS	END=67721622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	67721623	.	C	.	.	PASS	END=67721661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:95:60
chr1	67724110	.	T	.	.	LowGQX	END=67724112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	67724113	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	67724114	.	T	.	.	LowGQX	END=67724135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	67724136	.	A	.	.	LowGQX	END=67724148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	67724149	.	T	.	.	LowGQX	END=67724165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	67724166	.	T	.	.	PASS	END=67724171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	67724172	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	67724173	.	C	.	.	PASS	END=67724178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	67724179	.	A	.	.	LowGQX	END=67724181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	67724182	.	A	.	.	PASS	END=67724196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	67724197	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:2:60
chr1	67724198	.	A	.	.	PASS	END=67724199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:60
chr1	67724200	.	G	.	.	PASS	END=67724201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	67724202	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:66:60
chr1	67724203	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:18:60
chr1	67724204	.	T	.	.	PASS	END=67724214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	67724215	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:42:60
chr1	67724216	.	C	.	.	PASS	END=67724240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	67724241	.	C	.	.	PASS	END=67724245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:74:60
chr1	67724246	.	T	.	.	PASS	END=67724247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	67724248	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:55:60
chr1	67724249	.	C	.	.	PASS	END=67724267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	67724268	.	C	.	.	PASS	END=67724291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:94:60
chr1	67724292	.	C	.	.	PASS	END=67724332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	67724333	.	A	.	.	PASS	END=67724409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	67724410	.	C	.	.	PASS	END=67724530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	67724531	.	T	.	.	PASS	END=67724591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	67724592	.	A	.	.	PASS	END=67724639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	67724640	.	G	.	.	PASS	END=67724685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	67724686	.	C	.	.	PASS	END=67724719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	67724720	.	T	.	.	PASS	END=67724740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:97:60
chr1	67724741	.	C	.	.	PASS	END=67724750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	67724751	.	T	.	.	PASS	END=67724758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	67724759	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:54:60
chr1	67724760	.	A	.	.	PASS	END=67724792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	67724793	.	T	.	.	PASS	END=67724814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	67724815	.	T	.	.	PASS	END=67724824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	67724825	.	A	.	.	LowGQX	END=67724827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	67724828	.	T	.	.	PASS	END=67724833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	67724834	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	67724835	.	G	.	.	PASS	END=67724849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	67724850	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	67724851	.	A	.	.	PASS	END=67724852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	67724853	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	67724854	.	C	.	.	PASS	END=67724855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	67724856	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	67724857	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	67724858	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	67724859	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	67724860	.	T	.	.	LowGQX	END=67724862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr1	67786000	.	T	.	.	PASS	END=67786030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	67786031	.	C	.	.	PASS	END=67786090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	67786091	.	T	.	.	PASS	END=67786149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	67786150	.	T	.	.	PASS	END=67786157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	67786158	.	A	.	.	PASS	END=67786159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:75:60
chr1	67786160	.	A	.	.	PASS	END=67786178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	67787234	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	67787235	.	A	.	.	PASS	END=67787236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	67787237	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	67787238	.	T	.	.	PASS	END=67787241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	67787242	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	67787243	.	T	.	.	PASS	END=67787250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	67787251	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:21:60
chr1	67787252	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr1	67787253	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	67787254	.	A	.	.	PASS	END=67787258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	67787259	.	A	.	.	PASS	END=67787266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	67787267	.	A	.	.	PASS	END=67787278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	67787279	.	T	.	.	PASS	END=67787288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	67787289	.	G	.	.	PASS	END=67787308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:81:60
chr1	67787309	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:45:60
chr1	67787310	.	T	.	.	PASS	END=67787320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	67787321	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:46:60
chr1	67787322	.	C	.	.	PASS	END=67787350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	67787351	.	A	.	.	PASS	END=67787381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	67787382	.	C	.	.	PASS	END=67787470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	67787471	.	A	.	.	PASS	END=67787515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:86:60
chr1	67787516	.	T	.	.	PASS	END=67787531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	67787532	.	T	.	.	PASS	END=67787550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	67787551	.	G	.	.	PASS	END=67787560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	67787561	.	T	.	.	PASS	END=67787564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	67787565	.	C	.	.	PASS	END=67787579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	67787580	.	T	.	.	PASS	END=67787623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	67792367	.	G	.	.	PASS	END=67792377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	67792378	.	A	.	.	PASS	END=67792420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	67792421	.	C	.	.	PASS	END=67792470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	67792471	.	A	.	.	PASS	END=67792502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	67792503	.	C	.	.	PASS	END=67792517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	67792518	.	T	.	.	PASS	END=67792528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	67792529	.	T	.	.	PASS	END=67792531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	67792532	.	A	.	.	PASS	END=67792533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	67792534	.	T	.	.	PASS	END=67792535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	67792536	.	A	.	.	LowGQX	END=67792539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	67792540	.	A	.	.	LowGQX	END=67792543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	67792544	.	G	.	.	LowGQX	END=67792558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	67792559	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	67792560	.	T	.	.	LowGQX	END=67792568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	67792569	.	G	.	.	LowGQX	END=67792570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	67792571	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	67792572	.	C	.	.	LowGQX	END=67792582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	67792583	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	67793832	.	G	.	.	PASS	END=67793854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	67793855	.	G	.	.	PASS	END=67793881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	67793882	.	G	.	.	PASS	END=67793932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	67793933	.	A	.	.	PASS	END=67794003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	67794004	.	A	.	.	PASS	END=67794018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	67794019	.	C	.	.	PASS	END=67794029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	67794030	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:72:60
chr1	67794031	.	T	.	.	PASS	END=67794040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	67794041	.	C	.	.	PASS	END=67794056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	67794057	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:39:60
chr1	67794058	.	T	.	.	PASS	END=67794066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	67794067	.	G	.	.	PASS	END=67794073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	67794074	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:15:60
chr1	67794075	.	T	.	.	PASS	END=67794078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	67794079	.	T	.	.	PASS	END=67794082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	67794083	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	67794084	.	T	.	.	PASS	END=67794101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	67794102	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	67794103	.	A	.	.	PASS	END=67794105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	67794106	.	T	.	.	PASS	END=67794107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	67794108	.	T	.	.	PASS	END=67794117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	67794118	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:16:60
chr1	67795219	.	T	.	.	PASS	END=67795260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:87:60
chr1	67795261	.	G	.	.	PASS	END=67795308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	67795309	.	A	.	.	PASS	END=67795318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	67795319	.	T	C	2740.49	PASS	DP=105;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=11.4158;MQ=60;MQ0=0;QD=26.10;SB=-1724.09	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,104:105:99:2773,208,0:60:99:1.000
chr1	67795320	.	G	.	.	PASS	END=67795351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	67795352	.	G	.	.	PASS	END=67795367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	67795368	.	A	.	.	PASS	END=67795397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	67795398	.	A	.	.	PASS	END=67795420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	67795421	.	C	.	.	PASS	END=67795426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	67795427	.	A	.	.	PASS	END=67795442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	67795443	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:21:60
chr1	67795444	.	T	.	.	PASS	END=67795460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	67795461	.	T	.	.	PASS	END=67795463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	67796292	.	A	.	.	PASS	END=67796297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	67796298	.	G	.	.	PASS	END=67796300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:42:60
chr1	67796301	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:66:60
chr1	67796302	.	T	.	.	PASS	END=67796304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:45:60
chr1	67796305	.	A	.	.	PASS	END=67796308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:63:60
chr1	67796309	.	T	.	.	PASS	END=67796315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	67796316	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:66:60
chr1	67796317	.	C	A	30.04	LowQD	BaseQRankSum=1.996;DP=35;Dels=0.00;FS=2.442;HRun=1;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=-0.078;QD=0.86;ReadPosRankSum=0.648;SB=-27.48	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:31,4:35:60.02:60,0,599:60:30:0.114
chr1	67796318	.	A	.	.	PASS	END=67796319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:54:60
chr1	67796320	.	T	.	.	PASS	END=67796330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	67796331	.	G	.	.	PASS	END=67796334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:54:60
chr1	67796335	.	G	.	.	PASS	END=67796346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	67796347	.	A	.	.	PASS	END=67796361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	67796362	.	A	.	.	PASS	END=67796385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	67796386	.	T	.	.	PASS	END=67796455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:59
chr1	67796456	.	T	.	.	PASS	END=67796484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:59
chr1	67796485	.	C	.	.	PASS	END=67796498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	67796499	.	T	.	.	PASS	END=67796515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	67796516	.	C	.	.	PASS	END=67796517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	67796518	.	T	.	.	PASS	END=67796524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	67796525	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	67796526	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	67796527	.	G	.	.	LowGQX	END=67796533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	67796534	.	A	.	.	LowGQX	END=67796536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	67796537	.	G	.	.	LowGQX	END=67796544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	67804256	.	T	.	.	PASS	END=67804292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:82:60
chr1	67804293	.	C	.	.	PASS	END=67804314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	67804315	.	G	.	.	PASS	END=67804350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	67804351	.	G	.	.	PASS	END=67804459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	67816502	.	A	.	.	PASS	END=67816518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	67816519	.	G	.	.	PASS	END=67816553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	67816554	.	A	.	.	PASS	END=67816598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	67816599	.	T	.	.	PASS	END=67816644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	67816645	.	C	.	.	PASS	END=67816748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	67816749	.	A	.	.	PASS	END=67816769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	67816770	.	C	.	.	PASS	END=67816780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	67816781	.	T	.	.	PASS	END=67816818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	67816819	.	T	.	.	PASS	END=67816823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	67833457	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr1	67833458	.	T	.	.	PASS	END=67833463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	67833464	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:42:60
chr1	67833465	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:26:60
chr1	67833466	.	C	.	.	PASS	END=67833492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	67833493	.	T	.	.	PASS	END=67833500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	67833501	.	G	.	.	PASS	END=67833507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	67833508	.	G	.	.	PASS	END=67833512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	67833513	.	C	.	.	PASS	END=67833514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:56:60
chr1	67833515	.	G	.	.	PASS	END=67833526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	67833527	.	G	.	.	PASS	END=67833559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	67833560	.	T	.	.	PASS	END=67833636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	67833637	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:74:60
chr1	67833638	.	A	.	.	PASS	END=67833650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:60
chr1	67833651	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:54:60
chr1	67833652	.	A	.	.	PASS	END=67833655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	67833656	.	C	.	.	PASS	END=67833657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:36:60
chr1	67833658	.	C	.	.	PASS	END=67833677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	67833678	.	C	.	.	PASS	END=67833681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	67833682	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:21:60
chr1	67833683	.	C	.	.	PASS	END=67833690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	67833691	.	T	.	.	PASS	END=67833710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	67833711	.	A	.	.	PASS	END=67833732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	67833733	.	T	.	.	PASS	END=67833740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	67833741	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	67833742	.	A	.	.	PASS	END=67833744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	67833745	.	A	.	.	LowGQX	END=67833747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	67833748	.	T	.	.	LowGQX	END=67833751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	67833752	.	C	.	.	LowGQX	END=67833754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	67833755	.	T	.	.	LowGQX	END=67833759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	67838068	.	T	.	.	PASS	END=67838209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	67838210	.	G	.	.	PASS	END=67838228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	67838229	.	G	.	.	PASS	END=67838326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	67838327	.	C	.	.	PASS	END=67838404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	67838405	.	C	.	.	PASS	END=67838452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	67838453	.	G	.	.	PASS	END=67838467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	67838468	.	T	.	.	PASS	END=67838477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	67838478	.	A	.	.	PASS	END=67838499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	67838500	.	C	.	.	PASS	END=67838517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	67845618	.	T	.	.	PASS	END=67845648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	67845648	.	CTTCCT	C	2704.98	PASS	BaseQRankSum=-1.013;DP=85;FS=4.421;HRun=0;HaplotypeScore=79.8697;MQ=60;MQ0=0;MQRankSum=0.685;QD=31.82;ReadPosRankSum=1.226;SB=-1200.38	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:47,37:85:99:2744,0,3197:60:99:0.440
chr1	67845649	.	T	.	132.34	PASS	DP=84;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:47:47:99:60:99
chr1	67845650	.	T	.	129.32	PASS	DP=84;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:47:47:99:60:99
chr1	67845651	.	C	.	120.27	PASS	DP=80;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:42:43:90.28:60:90
chr1	67845652	.	C	.	120.26	PASS	DP=80;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:43:43:90.27:60:90
chr1	67845653	.	T	.	120.28	PASS	DP=80;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:42:43:90.29:60:90
chr1	67845654	.	T	.	.	PASS	END=67845702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	67845703	.	A	.	.	PASS	END=67845747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	67845748	.	A	.	.	PASS	END=67845781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	67845782	.	A	.	.	PASS	END=67845826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	67845827	.	T	.	.	PASS	END=67845845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	67845846	.	T	.	.	PASS	END=67845857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	67852211	.	A	.	.	PASS	END=67852244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	67852245	.	A	.	.	PASS	END=67852326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	67852327	.	T	.	.	PASS	END=67852334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	67852335	.	G	A	1853.89	PASS	BaseQRankSum=2.976;DP=114;Dels=0.00;FS=4.112;HRun=0;HaplotypeScore=8.6175;MQ=60;MQ0=0;MQRankSum=0.719;QD=16.26;ReadPosRankSum=-1.245;SB=-811.58	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:43,71:114:99:1884,0,1012:60:99:0.623
chr1	67852336	.	C	.	.	PASS	END=67852368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	67852369	.	T	.	.	PASS	END=67852385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	67852386	.	A	.	.	PASS	END=67852403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	67855661	.	A	.	.	PASS	END=67855670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	67855671	.	G	.	.	PASS	END=67855719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	67855720	.	T	.	.	PASS	END=67855816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	67855817	.	G	.	.	PASS	END=67855825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	67855826	.	C	.	.	PASS	END=67855852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	67855853	.	T	.	.	PASS	END=67855855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	67855856	.	T	.	.	PASS	END=67855862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	67861179	.	T	.	.	PASS	END=67861187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	67861188	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:57:60
chr1	67861189	.	T	.	.	PASS	END=67861201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:96:60
chr1	67861202	.	T	.	.	PASS	END=67861224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	67861225	.	C	.	.	PASS	END=67861244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	67861245	.	C	.	.	PASS	END=67861259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	67861260	.	C	.	.	PASS	END=67861280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	67861281	.	G	.	.	PASS	END=67861325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	67861326	.	A	.	.	PASS	END=67861425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	67861426	.	C	.	.	PASS	END=67861457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	67861458	.	G	.	.	PASS	END=67861491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	67861492	.	T	.	.	PASS	END=67861519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	67861520	.	C	A	2619.44	PASS	DP=75;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;QD=34.93;SB=-1233.49	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,75:75:99:2652,205,0:60:99:1.000
chr1	67861521	.	G	.	.	PASS	END=67861606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	67861607	.	C	.	.	PASS	END=67861652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	67861653	.	C	.	.	PASS	END=67861746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	67861747	.	T	.	.	PASS	END=67861769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	67861770	.	T	.	.	PASS	END=67861786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	67861787	.	A	.	.	PASS	END=67861812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	67861813	.	C	.	.	PASS	END=67861823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	67878818	.	G	.	.	LowGQX	END=67878968	GT	./.
chr1	67880847	.	A	.	.	LowGQX	END=67880928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	67880929	.	G	.	.	LowGQX	END=67881024	GT	./.
chr1	67885670	.	A	.	.	LowGQX	END=67885871	GT	./.
chr1	67889881	.	A	.	.	LowGQX	END=67890007	GT	./.
chr1	67890566	.	C	.	.	LowGQX	END=67890665	GT	./.
chr1	67890764	.	A	.	.	LowGQX	END=67890908	GT	./.
chr1	67891816	.	A	.	.	LowGQX	END=67891970	GT	./.
chr1	67895669	.	A	.	.	LowGQX	END=67895985	GT	./.
chr1	68151150	.	T	.	.	LowGQX	END=68151161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68151162	.	A	.	.	LowGQX	.	GT	./.
chr1	68151163	.	C	.	.	LowGQX	END=68151249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68151649	.	C	.	.	LowGQX	END=68151702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68151703	.	T	.	.	LowGQX	.	GT	./.
chr1	68151704	.	G	.	.	LowGQX	END=68151715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68151716	.	A	.	.	LowGQX	END=68151865	GT	./.
chr1	68152031	.	A	.	.	LowGQX	END=68152272	GT	./.
chr1	68153342	.	A	.	.	LowGQX	END=68153459	GT	./.
chr1	68171132	.	C	.	.	LowGQX	END=68171134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	68171135	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	68171136	.	A	.	.	LowGQX	END=68171145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	68171146	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	68171147	.	C	.	.	LowGQX	END=68171173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	68171174	.	T	.	.	LowGQX	END=68171195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	68171196	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	68171197	.	C	.	.	LowGQX	END=68171211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	68171212	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	68171213	.	G	.	.	LowGQX	END=68171217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	68171218	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	68171219	.	T	.	.	LowGQX	END=68171230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	68171231	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	68171232	.	A	.	.	LowGQX	END=68171242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	68171243	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	68171244	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	68171245	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	68171246	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	68171247	.	A	.	.	LowGQX	END=68171261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	68173215	.	C	.	.	LowGQX	END=68173373	GT	./.
chr1	68512289	.	G	.	.	LowGQX	END=68512497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68512498	.	C	.	.	LowGQX	END=68512583	GT	./.
chr1	68512584	.	G	.	.	LowGQX	END=68512596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	68512597	.	C	.	.	LowGQX	.	GT	./.
chr1	68512598	.	T	.	.	LowGQX	END=68512672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	68512673	.	C	.	.	LowGQX	END=68512904	GT	./.
chr1	68512905	.	G	.	.	LowGQX	END=68512974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68512975	.	A	.	.	LowGQX	.	GT	./.
chr1	68512976	.	C	.	.	LowGQX	END=68512982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68564313	.	A	.	.	LowGQX	END=68564438	GT	./.
chr1	68591907	.	T	.	.	LowGQX	END=68592020	GT	./.
chr1	68592713	.	A	.	.	LowGQX	END=68592809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68592810	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	68592811	.	T	.	.	LowGQX	END=68592875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68603461	.	A	.	.	LowGQX	END=68603618	GT	./.
chr1	68610244	.	C	.	.	LowGQX	END=68610343	GT	./.
chr1	68611550	.	A	.	.	LowGQX	END=68611697	GT	./.
chr1	68613801	.	C	.	.	LowGQX	END=68613900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68614244	.	A	.	.	LowGQX	.	GT	./.
chr1	68614245	.	C	.	.	LowGQX	END=68614250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68614251	.	A	.	.	LowGQX	.	GT	./.
chr1	68614252	.	C	.	.	LowGQX	END=68614270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68614271	.	G	.	.	LowGQX	.	GT	./.
chr1	68614272	.	G	.	.	LowGQX	END=68614302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68614303	.	T	.	.	LowGQX	END=68614345	GT	./.
chr1	68615869	.	A	.	.	LowGQX	END=68616041	GT	./.
chr1	68619198	.	A	.	.	LowGQX	END=68619338	GT	./.
chr1	68620780	.	A	.	.	LowGQX	END=68620934	GT	./.
chr1	68620935	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68620936	.	T	.	.	LowGQX	END=68620937	GT	./.
chr1	68620938	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68620939	.	G	.	.	LowGQX	.	GT	./.
chr1	68620940	.	G	.	.	LowGQX	END=68620943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68620944	.	C	.	.	LowGQX	END=68620945	GT	./.
chr1	68624804	.	A	.	.	LowGQX	END=68624932	GT	./.
chr1	68649198	.	T	.	.	LowGQX	END=68649297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68652254	.	T	.	.	LowGQX	END=68652353	GT	./.
chr1	68659632	.	C	.	.	LowGQX	END=68659912	GT	./.
chr1	68693885	.	G	.	.	LowGQX	END=68693910	GT	./.
chr1	68693911	.	G	.	.	LowGQX	END=68693984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	68697386	.	C	.	.	LowGQX	END=68697483	GT	./.
chr1	68697484	.	T	.	.	LowGQX	END=68697508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68697875	.	A	.	.	LowGQX	END=68697984	GT	./.
chr1	68895408	.	A	.	.	PASS	END=68895442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	68895443	.	T	.	.	PASS	END=68895465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	68895466	.	T	.	.	PASS	END=68895475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	68895476	.	G	.	.	PASS	END=68895554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	68895555	.	G	.	.	PASS	END=68895634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr1	68895635	.	A	.	.	PASS	END=68895661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	68896697	.	T	.	.	PASS	END=68896714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	68896715	.	A	.	.	PASS	END=68896756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	68896757	.	C	.	.	PASS	END=68896792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	68896793	.	C	.	.	PASS	END=68896825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	68896826	.	A	.	.	PASS	END=68896898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	68896899	.	A	.	.	PASS	END=68896910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	68896914	.	C	.	.	PASS	END=68896956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	68896957	.	T	.	.	PASS	END=68896993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	68896994	.	G	.	.	PASS	END=68897148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr1	68897149	.	C	.	.	PASS	END=68897205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	68897206	.	A	.	.	PASS	END=68897222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	68897223	.	T	.	.	PASS	END=68897239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	68897240	.	A	.	.	PASS	END=68897275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	68897276	.	A	.	.	PASS	END=68897318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	68897319	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:99:60
chr1	68903819	.	G	.	.	PASS	END=68903868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	68903869	.	C	.	.	PASS	END=68903891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	68903892	.	A	.	.	PASS	END=68904040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	68904041	.	A	.	.	PASS	END=68904050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	68904574	.	A	.	.	PASS	END=68904585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	68904586	.	C	.	.	PASS	END=68904600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	68904601	.	C	.	.	PASS	END=68904642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	68904643	.	T	.	.	PASS	END=68904679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	68904680	.	T	.	.	PASS	END=68904776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	68904777	.	G	.	.	PASS	END=68904815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	68904823	.	A	.	.	PASS	END=68904875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	68904876	.	C	.	.	PASS	END=68904946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	68904947	.	A	.	.	PASS	END=68904995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	68904996	.	T	.	.	PASS	END=68905011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	68905012	.	C	.	.	PASS	END=68905056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	68905057	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:66:60
chr1	68905193	.	A	.	.	PASS	END=68905223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	68905224	.	A	.	.	PASS	END=68905240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	68905241	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:84:60
chr1	68905242	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:47:60
chr1	68905243	.	C	.	.	PASS	END=68905259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	68905260	.	G	.	.	PASS	END=68905269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	68905270	.	G	.	.	PASS	END=68905286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	68905287	.	G	.	.	PASS	END=68905357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	68905358	.	G	C	612.57	PASS	BaseQRankSum=-1.181;DP=44;Dels=0.00;FS=1.259;HRun=0;HaplotypeScore=10.5336;MQ=60;MQ0=0;MQRankSum=-1.567;QD=13.92;ReadPosRankSum=-0.988;SB=-302.67	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:17,27:44:99:643,0,464:60:99:0.614
chr1	68905359	.	A	.	.	PASS	END=68905376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	68906485	.	T	.	.	PASS	END=68906600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	68906601	.	C	.	.	PASS	END=68906690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	68906691	.	A	.	.	PASS	END=68906734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	68910163	.	T	.	.	PASS	END=68910170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	68910171	.	C	.	.	PASS	END=68910172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:66:60
chr1	68910173	.	A	.	.	PASS	END=68910177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	68910178	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:64:60
chr1	68910179	.	T	.	.	PASS	END=68910194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	68910195	.	A	.	.	PASS	END=68910266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	68910267	.	C	.	.	PASS	END=68910345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	68910346	.	A	.	.	PASS	END=68910406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	68910408	.	A	.	.	PASS	END=68910454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	68910455	.	T	.	.	PASS	END=68910557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	68910558	.	C	.	.	PASS	END=68910573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	68910574	.	A	.	.	PASS	END=68910601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	68910602	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:70:99:60
chr1	68910603	.	G	.	.	PASS	END=68910616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	68910617	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:99:60
chr1	68912342	.	C	.	.	PASS	END=68912354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	68912355	.	A	.	.	PASS	END=68912375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	68912376	.	A	.	.	PASS	END=68912400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	68912401	.	G	.	.	PASS	END=68912461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	68912462	.	T	.	.	PASS	END=68912515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	68912516	.	C	.	.	PASS	END=68912534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	68912535	.	G	.	.	PASS	END=68912555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	68912556	.	G	.	.	PASS	END=68912591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	68912592	.	T	.	.	PASS	END=68912594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	68914256	.	A	.	.	PASS	END=68914273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	68914274	.	A	.	.	PASS	END=68914302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	68914303	.	C	.	.	PASS	END=68914336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	68914337	.	G	.	.	PASS	END=68914395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	68914396	.	T	.	.	PASS	END=68914439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	68914440	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:73:99:60
chr1	68915527	.	T	.	.	PASS	END=68915560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	68915561	.	C	.	.	PASS	END=68915620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	68915621	.	C	.	.	PASS	END=68915639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	68942613	.	A	.	.	LowGQX	END=68942754	GT	./.
chr1	68943468	.	A	.	.	LowGQX	END=68943657	GT	./.
chr1	68944825	.	A	.	.	LowGQX	END=68945005	GT	./.
chr1	68947121	.	A	.	.	LowGQX	END=68947297	GT	./.
chr1	68947728	.	C	.	.	LowGQX	END=68948011	GT	./.
chr1	68948012	.	G	.	.	LowGQX	END=68948061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	68948062	.	T	.	.	LowGQX	.	GT	./.
chr1	68948063	.	T	.	.	LowGQX	END=68948094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	68948095	.	G	.	.	LowGQX	.	GT	./.
chr1	68948096	.	G	.	.	LowGQX	END=68948177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	68948178	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	68948179	.	A	.	.	LowGQX	END=68948265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68948266	.	T	.	.	LowGQX	END=68948580	GT	./.
chr1	68948922	.	T	.	.	LowGQX	END=68949021	GT	./.
chr1	68949631	.	A	.	.	LowGQX	END=68949810	GT	./.
chr1	68952594	.	C	.	.	LowGQX	END=68952693	GT	./.
chr1	68954055	.	A	.	.	LowGQX	END=68954234	GT	./.
chr1	68954547	.	A	.	.	LowGQX	END=68954719	GT	./.
chr1	68955133	.	A	.	.	LowGQX	END=68955322	GT	./.
chr1	68960111	.	A	.	.	LowGQX	END=68960380	GT	./.
chr1	68962609	.	G	.	.	LowGQX	END=68962666	GT	./.
chr1	68962667	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	68962668	.	A	.	.	LowGQX	.	GT	./.
chr1	68962669	.	C	.	.	LowGQX	END=68962708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70034274	.	T	.	.	LowGQX	END=70034373	GT	./.
chr1	70144063	.	G	.	.	LowGQX	END=70144136	GT	./.
chr1	70144137	.	C	.	.	LowGQX	END=70144162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70181851	.	A	.	.	LowGQX	END=70181950	GT	./.
chr1	70225873	.	G	.	.	LowGQX	END=70226078	GT	./.
chr1	70257724	.	A	.	.	LowGQX	END=70257792	GT	./.
chr1	70257793	.	C	.	.	LowGQX	END=70257802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70257803	.	T	.	.	LowGQX	.	GT	./.
chr1	70257804	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70257805	.	G	.	.	LowGQX	.	GT	./.
chr1	70257806	.	T	.	.	LowGQX	END=70257815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70257816	.	C	.	.	LowGQX	.	GT	./.
chr1	70257817	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70257818	.	T	.	.	LowGQX	.	GT	./.
chr1	70257819	.	A	.	.	LowGQX	END=70257823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70257824	.	A	.	.	LowGQX	.	GT	./.
chr1	70257825	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70257826	.	T	.	.	LowGQX	.	GT	./.
chr1	70257827	.	C	.	.	LowGQX	END=70257828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70257829	.	A	.	.	LowGQX	.	GT	./.
chr1	70257830	.	C	.	.	LowGQX	END=70257834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70257835	.	G	.	.	LowGQX	.	GT	./.
chr1	70257836	.	T	.	.	LowGQX	END=70257843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70257844	.	G	.	.	LowGQX	.	GT	./.
chr1	70257845	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70291421	.	C	.	.	LowGQX	END=70291520	GT	./.
chr1	70300401	.	T	.	.	LowGQX	END=70300446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70300447	.	T	.	.	LowGQX	END=70300557	GT	./.
chr1	70303889	.	T	.	.	LowGQX	END=70303911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70303912	.	T	.	.	LowGQX	END=70304040	GT	./.
chr1	70304687	.	T	.	.	LowGQX	END=70304786	GT	./.
chr1	70339103	.	T	.	.	LowGQX	END=70339202	GT	./.
chr1	70397172	.	T	.	.	LowGQX	END=70397182	GT	./.
chr1	70397183	.	G	.	.	LowGQX	END=70397271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	70445990	.	C	.	.	LowGQX	END=70446149	GT	./.
chr1	70451923	.	A	.	.	LowGQX	END=70451955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70451956	.	T	.	.	LowGQX	END=70452071	GT	./.
chr1	70460172	.	T	.	.	LowGQX	END=70460330	GT	./.
chr1	70477438	.	T	.	.	LowGQX	END=70477611	GT	./.
chr1	70478605	.	A	.	.	LowGQX	END=70478774	GT	./.
chr1	70482133	.	T	.	.	LowGQX	END=70482138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70482139	.	T	.	.	LowGQX	END=70482232	GT	./.
chr1	70484400	.	A	.	.	LowGQX	.	GT	./.
chr1	70484401	.	G	.	.	LowGQX	END=70484405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70484406	.	A	.	.	LowGQX	.	GT	./.
chr1	70484407	.	A	.	.	LowGQX	END=70484410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70484411	.	C	.	.	LowGQX	.	GT	./.
chr1	70484412	.	T	.	.	LowGQX	END=70484413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70484414	.	A	.	.	LowGQX	.	GT	./.
chr1	70484415	.	T	.	.	LowGQX	END=70484425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70484426	.	A	.	.	LowGQX	.	GT	./.
chr1	70484427	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70484428	.	A	.	.	LowGQX	.	GT	./.
chr1	70484429	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70484430	.	A	.	.	LowGQX	END=70484432	GT	./.
chr1	70484433	.	C	.	.	LowGQX	END=70484445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70484446	.	A	.	.	LowGQX	.	GT	./.
chr1	70484447	.	A	.	.	LowGQX	END=70484452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70484453	.	A	.	.	LowGQX	.	GT	./.
chr1	70484454	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70484455	.	A	.	.	LowGQX	.	GT	./.
chr1	70484456	.	G	.	.	LowGQX	END=70484457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70484458	.	A	.	.	LowGQX	.	GT	./.
chr1	70484459	.	T	.	.	LowGQX	END=70484480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70484481	.	A	.	.	LowGQX	.	GT	./.
chr1	70484482	.	G	.	.	LowGQX	END=70484490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70484491	.	T	.	.	LowGQX	.	GT	./.
chr1	70484492	.	G	.	.	LowGQX	END=70484502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70484503	.	T	.	.	LowGQX	.	GT	./.
chr1	70486686	.	A	.	.	LowGQX	END=70486714	GT	./.
chr1	70486715	.	A	.	.	LowGQX	END=70486814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70488807	.	A	.	.	LowGQX	END=70489059	GT	./.
chr1	70493852	.	A	.	.	LowGQX	END=70493853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	70493854	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	70493855	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	70493856	.	T	.	.	LowGQX	END=70493861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70493862	.	A	.	.	LowGQX	.	GT	./.
chr1	70493863	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70493864	.	A	.	.	LowGQX	END=70493867	GT	./.
chr1	70493868	.	A	.	.	LowGQX	END=70493878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70493879	.	C	.	.	LowGQX	.	GT	./.
chr1	70493880	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70493881	.	A	.	.	LowGQX	END=70493882	GT	./.
chr1	70493883	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70493884	.	C	.	.	LowGQX	.	GT	./.
chr1	70493885	.	C	.	.	LowGQX	END=70493888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70493889	.	C	.	.	LowGQX	.	GT	./.
chr1	70493890	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70493891	.	C	.	.	LowGQX	END=70493894	GT	./.
chr1	70493895	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70493896	.	G	.	.	LowGQX	END=70493897	GT	./.
chr1	70493898	.	T	.	.	LowGQX	END=70493900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70493901	.	A	.	.	LowGQX	END=70493902	GT	./.
chr1	70493903	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70493904	.	G	.	.	LowGQX	.	GT	./.
chr1	70493905	.	A	.	.	LowGQX	END=70493913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70493914	.	A	.	.	LowGQX	.	GT	./.
chr1	70493915	.	A	.	.	LowGQX	END=70493916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70493917	.	T	.	.	LowGQX	END=70494056	GT	./.
chr1	70501802	.	A	.	.	LowGQX	END=70501834	GT	./.
chr1	70501835	.	G	.	.	LowGQX	END=70501897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70501898	.	T	.	.	LowGQX	.	GT	./.
chr1	70501899	.	A	.	.	LowGQX	END=70501917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70502125	.	A	.	.	LowGQX	END=70502201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70502202	.	A	.	.	LowGQX	END=70502309	GT	./.
chr1	70503794	.	A	.	.	LowGQX	.	GT	./.
chr1	70503795	.	G	.	.	LowGQX	END=70503946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70503947	.	A	.	.	LowGQX	END=70505478	GT	./.
chr1	70509635	.	A	.	.	LowGQX	END=70509779	GT	./.
chr1	70518707	.	A	.	.	LowGQX	END=70518830	GT	./.
chr1	70541758	.	A	.	.	LowGQX	END=70541980	GT	./.
chr1	70541981	.	G	.	.	LowGQX	END=70541983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70555407	.	T	.	.	LowGQX	END=70555557	GT	./.
chr1	70573423	.	T	.	.	LowGQX	END=70573522	GT	./.
chr1	70587461	.	A	.	.	LowGQX	END=70587620	GT	./.
chr1	70611481	.	T	.	.	LowGQX	END=70611590	GT	./.
chr1	70614168	.	A	.	.	LowGQX	END=70614357	GT	./.
chr1	70616749	.	C	.	.	LowGQX	END=70616899	GT	./.
chr1	70618114	.	A	.	.	LowGQX	END=70618273	GT	./.
chr1	70621370	.	A	.	.	LowGQX	END=70621481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	70625011	.	A	.	.	LowGQX	END=70625021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70625022	.	A	.	.	LowGQX	.	GT	./.
chr1	70625023	.	A	.	.	LowGQX	END=70625025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70625026	.	T	.	.	LowGQX	.	GT	./.
chr1	70625027	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70625028	.	T	.	.	LowGQX	.	GT	./.
chr1	70625029	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70625030	.	T	.	.	LowGQX	.	GT	./.
chr1	70625031	.	A	.	.	LowGQX	END=70625032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70625033	.	T	.	.	LowGQX	END=70625035	GT	./.
chr1	70625036	.	A	.	.	LowGQX	END=70625039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70625040	.	A	.	.	LowGQX	.	GT	./.
chr1	70625041	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70625042	.	G	.	.	LowGQX	.	GT	./.
chr1	70625043	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70625044	.	C	.	.	LowGQX	END=70625045	GT	./.
chr1	70625046	.	T	.	.	LowGQX	END=70625048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70625049	.	A	.	.	LowGQX	.	GT	./.
chr1	70625050	.	T	.	.	LowGQX	END=70625053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70625054	.	G	.	.	LowGQX	.	GT	./.
chr1	70625055	.	A	.	.	LowGQX	END=70625058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70625059	.	T	.	.	LowGQX	END=70625060	GT	./.
chr1	70625061	.	G	.	.	LowGQX	END=70625076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70625077	.	T	.	.	LowGQX	END=70625078	GT	./.
chr1	70625079	.	A	.	.	LowGQX	END=70625083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70625084	.	A	.	.	LowGQX	.	GT	./.
chr1	70625085	.	G	.	.	LowGQX	END=70625095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70625096	.	A	.	.	LowGQX	END=70625123	GT	./.
chr1	70639121	.	A	.	.	LowGQX	END=70639220	GT	./.
chr1	70639299	.	A	.	.	LowGQX	END=70639398	GT	./.
chr1	70641471	.	T	.	.	LowGQX	END=70641539	GT	./.
chr1	70641540	.	T	.	.	LowGQX	END=70641555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70641556	.	G	.	.	LowGQX	.	GT	./.
chr1	70641557	.	G	.	.	LowGQX	END=70641667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70644532	.	A	.	.	LowGQX	END=70644678	GT	./.
chr1	70646767	.	A	.	.	LowGQX	END=70646894	GT	./.
chr1	70650466	.	A	.	.	LowGQX	END=70650523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	70650524	.	T	.	.	LowGQX	.	GT	./.
chr1	70650525	.	A	.	.	LowGQX	END=70650544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70650545	.	T	.	.	LowGQX	.	GT	./.
chr1	70650546	.	C	.	.	LowGQX	END=70650547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70650548	.	G	.	.	LowGQX	.	GT	./.
chr1	70650549	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70650550	.	T	.	.	LowGQX	.	GT	./.
chr1	70650551	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70650552	.	T	.	.	LowGQX	.	GT	./.
chr1	70650553	.	C	.	.	LowGQX	END=70650599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70652876	.	A	.	.	LowGQX	END=70653034	GT	./.
chr1	70654773	.	A	.	.	LowGQX	END=70654958	GT	./.
chr1	70671071	.	A	.	.	LowGQX	END=70671225	GT	./.
chr1	70687318	.	C	.	.	LowGQX	END=70687524	GT	./.
chr1	70694103	.	A	.	.	LowGQX	END=70694240	GT	./.
chr1	70694880	.	G	.	.	LowGQX	END=70694933	GT	./.
chr1	70694934	.	C	.	.	LowGQX	END=70694979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	70696219	.	C	.	.	LowGQX	END=70696318	GT	./.
chr1	70696740	.	T	.	.	LowGQX	END=70696839	GT	./.
chr1	70697517	.	C	.	.	LowGQX	END=70697616	GT	./.
chr1	70697793	.	A	.	.	LowGQX	END=70698062	GT	./.
chr1	70700376	.	C	.	.	LowGQX	END=70700475	GT	./.
chr1	70701159	.	T	.	.	LowGQX	END=70701258	GT	./.
chr1	70703066	.	A	.	.	LowGQX	END=70703237	GT	./.
chr1	70705113	.	T	.	.	LowGQX	END=70705212	GT	./.
chr1	70710365	.	A	.	.	LowGQX	END=70710485	GT	./.
chr1	70710486	.	C	.	.	LowGQX	END=70710500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	70712496	.	G	.	.	LowGQX	END=70712531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70712532	.	C	.	.	LowGQX	.	GT	./.
chr1	70712533	.	G	.	.	LowGQX	END=70712553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70712554	.	G	.	.	LowGQX	.	GT	./.
chr1	70712555	.	T	.	.	LowGQX	END=70712581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70712582	.	T	.	.	LowGQX	END=70712595	GT	./.
chr1	70715614	.	T	.	.	LowGQX	END=70715732	GT	./.
chr1	70716046	.	A	.	.	LowGQX	END=70716188	GT	./.
chr1	70716289	.	A	.	.	LowGQX	END=70716490	GT	./.
chr1	70728398	.	A	.	.	LowGQX	END=70728532	GT	./.
chr1	70736537	.	A	.	.	LowGQX	END=70736641	GT	./.
chr1	70740401	.	A	.	.	LowGQX	END=70740455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70740456	.	T	.	.	LowGQX	.	GT	./.
chr1	70740457	.	T	.	.	LowGQX	END=70740503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70742386	.	T	.	.	LowGQX	END=70742537	GT	./.
chr1	70758069	.	A	.	.	LowGQX	END=70758258	GT	./.
chr1	70761811	.	A	.	.	LowGQX	END=70761944	GT	./.
chr1	70761945	.	C	.	.	LowGQX	END=70761946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70766445	.	A	.	.	LowGQX	END=70766624	GT	./.
chr1	70771891	.	A	.	.	LowGQX	END=70771990	GT	./.
chr1	70779401	.	T	.	.	LowGQX	END=70779500	GT	./.
chr1	70781157	.	A	.	.	LowGQX	END=70781256	GT	./.
chr1	70790534	.	A	.	.	LowGQX	END=70790642	GT	./.
chr1	70801652	.	A	.	.	LowGQX	END=70801811	GT	./.
chr1	70819648	.	C	.	.	LowGQX	END=70819749	GT	./.
chr1	70819750	.	G	.	.	LowGQX	END=70819785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70819786	.	A	.	.	LowGQX	.	GT	./.
chr1	70819787	.	G	.	.	LowGQX	END=70819837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70819838	.	A	.	.	LowGQX	.	GT	./.
chr1	70819839	.	C	.	.	LowGQX	END=70819886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70819887	.	A	.	.	LowGQX	.	GT	./.
chr1	70819888	.	G	.	.	LowGQX	END=70819890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70819891	.	C	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	70819892	.	G	.	.	LowGQX	END=70819893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70819894	.	A	.	.	LowGQX	.	GT	./.
chr1	70819895	.	G	.	.	LowGQX	END=70819899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70819900	.	C	.	.	LowGQX	END=70819913	GT	./.
chr1	70819914	.	G	.	.	LowGQX	END=70819918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70819919	.	T	.	.	LowGQX	.	GT	./.
chr1	70819920	.	G	.	.	LowGQX	END=70819921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70819922	.	T	.	.	LowGQX	.	GT	./.
chr1	70819923	.	G	.	.	LowGQX	END=70819925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70819926	.	T	.	.	LowGQX	.	GT	./.
chr1	70819927	.	A	.	.	LowGQX	END=70819934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70819935	.	T	.	.	LowGQX	.	GT	./.
chr1	70819936	.	C	.	.	LowGQX	END=70819940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70819941	.	G	.	.	LowGQX	.	GT	./.
chr1	70819942	.	A	.	.	LowGQX	END=70819948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70819949	.	T	.	.	LowGQX	END=70819950	GT	./.
chr1	70819951	.	G	.	.	LowGQX	END=70819958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70819959	.	T	.	.	LowGQX	END=70819960	GT	./.
chr1	70819961	.	C	.	.	LowGQX	END=70819967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70819968	.	T	.	.	LowGQX	.	GT	./.
chr1	70819969	.	G	.	.	LowGQX	END=70819970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70819971	.	T	.	.	LowGQX	END=70819972	GT	./.
chr1	70819973	.	C	.	.	LowGQX	END=70819976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70819977	.	T	.	.	LowGQX	.	GT	./.
chr1	70819978	.	A	.	.	LowGQX	END=70819981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70819982	.	G	.	.	LowGQX	END=70819983	GT	./.
chr1	70819984	.	A	.	.	LowGQX	END=70820056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70820057	.	T	.	.	LowGQX	.	GT	./.
chr1	70820058	.	C	.	.	LowGQX	END=70820063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70820064	.	G	.	.	LowGQX	END=70820093	GT	./.
chr1	70820633	.	A	.	.	LowGQX	END=70820647	GT	./.
chr1	70820648	.	G	.	.	LowGQX	END=70820747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70820748	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	70820749	.	A	.	.	LowGQX	END=70820852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70820853	.	A	.	.	LowGQX	END=70820893	GT	./.
chr1	70831812	.	C	.	.	LowGQX	END=70831911	GT	./.
chr1	70831961	.	A	.	.	LowGQX	END=70832013	GT	./.
chr1	70832014	.	A	.	.	LowGQX	END=70832029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70832030	.	C	.	.	LowGQX	.	GT	./.
chr1	70832031	.	T	.	.	LowGQX	END=70832060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70832124	.	T	.	.	LowGQX	END=70832223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	70833238	.	T	.	.	LowGQX	END=70833411	GT	./.
chr1	70877048	.	C	.	.	PASS	END=70877054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	70877055	.	T	.	.	PASS	END=70877112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	70877113	.	C	.	.	PASS	END=70877177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	70877178	.	A	.	.	PASS	END=70877199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	70877200	.	C	.	.	PASS	END=70877210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	70877211	.	T	.	.	PASS	END=70877225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	70877226	.	T	.	.	PASS	END=70877231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	70877232	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:39:60
chr1	70877233	.	C	.	.	PASS	END=70877244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	70877245	.	A	.	.	PASS	END=70877246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	70877247	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:39:60
chr1	70877248	.	G	.	.	PASS	END=70877262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	70877263	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:30:60
chr1	70877264	.	T	.	.	PASS	END=70877281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	70877282	.	C	.	.	PASS	END=70877288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	70877289	.	T	.	.	PASS	END=70877300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	70877301	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	70877302	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	70877303	.	C	.	.	PASS	END=70877308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	70877309	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	70877310	.	A	.	.	PASS	END=70877315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	70877316	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	70877317	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:60
chr1	70881588	.	C	.	.	PASS	END=70881707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	70881708	.	G	.	.	PASS	END=70881719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	70881720	.	T	.	.	PASS	END=70881756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	70881757	.	T	.	.	PASS	END=70881771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	70883569	.	T	.	.	PASS	END=70883572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	70883573	.	C	.	.	PASS	END=70883716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	70883717	.	T	.	.	PASS	END=70883722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	70883723	.	A	.	.	PASS	END=70883766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	70887198	.	G	.	.	PASS	END=70887220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	70887221	.	C	.	.	PASS	END=70887247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	70887248	.	G	.	.	PASS	END=70887365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	70887366	.	A	.	.	PASS	END=70887409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	70889917	.	G	.	.	PASS	END=70889936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	70889937	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:57:60
chr1	70889938	.	A	.	.	PASS	END=70889982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr1	70889983	.	A	.	.	PASS	END=70890015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	70890016	.	A	.	.	PASS	END=70890031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	70890032	.	A	.	.	PASS	END=70890100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	70890101	.	T	.	.	PASS	END=70890150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	70895426	.	A	.	.	PASS	END=70895500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	70895501	.	A	.	.	PASS	END=70895541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	70895542	.	G	.	.	PASS	END=70895571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	70895572	.	G	.	.	PASS	END=70895585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	70895949	.	A	.	.	PASS	END=70895970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	70895971	.	T	.	.	PASS	END=70896090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	70896091	.	A	.	.	PASS	END=70896109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	70896110	.	A	.	.	PASS	END=70896128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	70897715	.	T	.	.	PASS	END=70897719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	70897720	.	G	.	.	PASS	END=70897731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	70897732	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:66:60
chr1	70897733	.	T	.	.	PASS	END=70897766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	70897767	.	T	.	.	PASS	END=70897785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	70897786	.	C	.	.	PASS	END=70897805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	70897806	.	C	.	.	PASS	END=70897916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	70897917	.	T	.	.	PASS	END=70897943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	70897944	.	A	.	.	PASS	END=70897969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	70899460	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr1	70899461	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	70899462	.	A	.	.	LowGQX	END=70899463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:21:60
chr1	70899464	.	T	.	.	PASS	END=70899465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	70899466	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:18:60
chr1	70899467	.	A	.	.	LowGQX	END=70899468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:21:60
chr1	70899469	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:36:60
chr1	70899470	.	T	.	.	LowGQX	END=70899471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:27:60
chr1	70899472	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:36:60
chr1	70899473	.	A	.	.	LowGQX	END=70899475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:24:60
chr1	70899476	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr1	70899477	.	C	.	.	LowGQX	END=70899478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:24:60
chr1	70899479	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	70899480	.	A	.	.	LowGQX	END=70899482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:24:60
chr1	70899483	.	T	.	.	PASS	END=70899484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	70899485	.	A	.	.	LowGQX	END=70899487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:24:60
chr1	70899488	.	C	.	.	PASS	END=70899496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chr1	70899497	.	C	.	.	PASS	END=70899504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	70899505	.	T	.	.	PASS	END=70899527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	70899528	.	C	.	.	PASS	END=70899547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	70899548	.	T	.	.	PASS	END=70899550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	70899551	.	G	.	.	PASS	END=70899561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	70899562	.	G	.	.	PASS	END=70899683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	70900757	.	T	.	.	PASS	END=70900850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	70900851	.	C	.	.	PASS	END=70900871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	70900872	.	T	.	.	PASS	END=70900911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	70904320	.	C	.	.	PASS	END=70904329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	70904330	.	C	.	.	PASS	END=70904364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	70904365	.	T	.	.	PASS	END=70904384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	70904385	.	A	.	.	PASS	END=70904461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	70904462	.	G	.	.	PASS	END=70904481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	70904482	.	A	.	.	PASS	END=70904495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	70904496	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:64:60
chr1	70904497	.	T	.	.	PASS	END=70904521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	70904522	.	A	.	.	PASS	END=70904527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	70904528	.	T	.	.	PASS	END=70904535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	70904536	.	T	.	.	PASS	END=70904539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	70904540	.	T	.	.	PASS	END=70904545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	70904546	.	T	.	.	PASS	END=70904547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	70904548	.	T	.	.	PASS	END=70904549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	70904550	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	70904733	.	C	.	.	PASS	END=70904773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	70904774	.	G	.	.	PASS	END=70904846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	70904847	.	A	.	.	PASS	END=70904861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	71318430	.	T	.	.	LowGQX	END=71318582	GT	./.
chr1	71328017	.	T	.	.	LowGQX	END=71328116	GT	./.
chr1	71331370	.	A	.	.	LowGQX	END=71331518	GT	./.
chr1	71334915	.	G	.	.	LowGQX	END=71334966	GT	./.
chr1	71334967	.	T	.	.	LowGQX	END=71334977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71334978	.	A	.	.	LowGQX	END=71334979	GT	./.
chr1	71334980	.	C	.	.	LowGQX	END=71334983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71334984	.	T	.	.	LowGQX	.	GT	./.
chr1	71334985	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71334986	.	C	.	.	LowGQX	.	GT	./.
chr1	71334987	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71334988	.	A	.	.	LowGQX	.	GT	./.
chr1	71334989	.	T	.	.	LowGQX	END=71334990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71334991	.	A	.	.	LowGQX	END=71334992	GT	./.
chr1	71334993	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71334994	.	C	.	.	LowGQX	END=71334995	GT	./.
chr1	71334996	.	C	.	.	LowGQX	END=71334999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71335000	.	C	.	.	LowGQX	.	GT	./.
chr1	71335001	.	T	.	.	LowGQX	END=71335002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71335003	.	C	.	.	LowGQX	.	GT	./.
chr1	71335004	.	T	.	.	LowGQX	END=71335012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71335013	.	G	.	.	LowGQX	.	GT	./.
chr1	71335014	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71349631	.	G	.	.	LowGQX	END=71349809	GT	./.
chr1	71351936	.	T	.	.	LowGQX	END=71352035	GT	./.
chr1	71418588	.	T	.	.	LowGQX	END=71418744	GT	./.
chr1	71419349	.	T	.	.	LowGQX	END=71419408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71419409	.	A	.	.	LowGQX	.	GT	./.
chr1	71419410	.	A	.	.	LowGQX	END=71419411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71419412	.	T	.	.	LowGQX	.	GT	./.
chr1	71419413	.	G	.	.	LowGQX	END=71419417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71419418	.	T	.	.	LowGQX	.	GT	./.
chr1	71419419	.	A	.	.	LowGQX	END=71419423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71419424	.	T	.	.	LowGQX	.	GT	./.
chr1	71419425	.	A	.	.	LowGQX	END=71419426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71419427	.	T	.	.	LowGQX	.	GT	./.
chr1	71419428	.	A	.	.	LowGQX	END=71419429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71419430	.	T	.	.	LowGQX	.	GT	./.
chr1	71419431	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71419432	.	T	.	.	LowGQX	.	GT	./.
chr1	71419433	.	C	.	.	LowGQX	END=71419435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71419436	.	T	.	.	LowGQX	.	GT	./.
chr1	71419437	.	G	.	.	LowGQX	END=71419465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71419466	.	T	.	.	LowGQX	.	GT	./.
chr1	71419467	.	T	.	.	LowGQX	END=71419481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71419482	.	A	.	.	LowGQX	.	GT	./.
chr1	71419483	.	G	.	.	LowGQX	END=71419498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71419499	.	C	.	.	LowGQX	END=71419508	GT	./.
chr1	71437365	.	A	.	.	LowGQX	END=71437464	GT	./.
chr1	71439976	.	T	.	.	LowGQX	END=71439994	GT	./.
chr1	71439995	.	C	.	.	LowGQX	END=71440039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71440040	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	71440041	.	T	.	.	LowGQX	END=71440075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71477896	.	T	.	.	LowGQX	END=71478169	GT	./.
chr1	71512362	.	A	.	.	LowGQX	END=71512663	GT	./.
chr1	71512664	.	G	.	.	LowGQX	END=71512685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71512686	.	G	.	.	LowGQX	.	GT	./.
chr1	71512687	.	G	.	.	LowGQX	END=71512724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	71512725	.	A	.	.	LowGQX	.	GT	./.
chr1	71512726	.	G	.	.	LowGQX	END=71512740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	71512741	.	T	.	.	LowGQX	.	GT	./.
chr1	71512742	.	G	.	.	LowGQX	END=71512825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	71512826	.	C	.	.	LowGQX	END=71513262	GT	./.
chr1	71530739	.	G	.	.	LowGQX	END=71530838	GT	./.
chr1	71531369	.	A	.	.	LowGQX	END=71531468	GT	./.
chr1	71532427	.	A	.	.	LowGQX	END=71532619	GT	./.
chr1	71533253	.	T	.	.	LowGQX	END=71533463	GT	./.
chr1	71534953	.	A	.	.	LowGQX	END=71535052	GT	./.
chr1	71536508	.	A	.	.	LowGQX	END=71536681	GT	./.
chr1	71537802	.	A	.	.	LowGQX	END=71537981	GT	./.
chr1	71538144	.	A	.	.	LowGQX	END=71538243	GT	./.
chr1	71542416	.	T	.	.	LowGQX	END=71542569	GT	./.
chr1	71544138	.	A	.	.	LowGQX	END=71544250	GT	./.
chr1	71544316	.	T	.	.	LowGQX	END=71544415	GT	./.
chr1	71546601	.	T	.	.	LowGQX	END=71546700	GT	./.
chr1	71873127	.	A	.	.	PASS	END=71873230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	71873231	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:99:60
chr1	71873232	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:54:60
chr1	71873233	.	C	.	.	PASS	END=71873251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	71873252	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:96:60
chr1	71873253	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:72:60
chr1	71873254	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:42:60
chr1	71873255	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:81:60
chr1	72058498	.	A	.	.	PASS	END=72058535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	72058536	.	T	.	.	PASS	END=72058551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr1	72058552	.	G	A	7402.82	PASS	DP=252;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=5.6815;MQ=60;MQ0=0;QD=29.38;SB=-3585.71	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,252:252:99:7403,548,0:60:99:1.000
chr1	72058553	.	G	.	.	PASS	END=72058653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr1	72076707	.	A	.	.	PASS	END=72076717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	72076718	.	C	.	.	PASS	END=72076756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	72076757	.	C	.	.	PASS	END=72076831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	72163689	.	A	.	.	PASS	END=72163803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	72163804	.	C	.	.	PASS	END=72163824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	72241853	.	A	.	.	PASS	END=72241894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	72241895	.	T	.	.	PASS	END=72241955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	72241956	.	G	.	.	PASS	END=72241982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	72400760	.	A	.	.	PASS	END=72400774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	72400775	.	A	.	.	PASS	END=72400787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	72400788	.	G	.	.	PASS	END=72400811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	72400812	.	A	.	.	PASS	END=72400866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	72400867	.	T	.	.	PASS	END=72400938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	72400939	.	T	.	.	PASS	END=72400965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	72400966	.	C	.	.	PASS	END=72400996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	72748000	.	A	.	.	PASS	END=72748022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	72748023	.	T	.	.	PASS	END=72748153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	72748154	.	C	.	.	PASS	END=72748173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	72748174	.	C	.	.	PASS	END=72748179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	74492465	.	A	.	.	LowGQX	END=74492655	GT	./.
chr1	74506895	.	A	.	.	LowGQX	END=74507619	GT	./.
chr1	74540303	.	A	.	.	LowGQX	END=74540476	GT	./.
chr1	74549834	.	C	.	.	LowGQX	END=74549933	GT	./.
chr1	74574527	.	T	.	.	LowGQX	END=74574626	GT	./.
chr1	74574876	.	T	.	.	LowGQX	END=74574975	GT	./.
chr1	74574982	.	T	.	.	LowGQX	END=74575265	GT	./.
chr1	74610127	.	A	.	.	LowGQX	END=74610229	GT	./.
chr1	74621375	.	T	.	.	LowGQX	END=74621552	GT	./.
chr1	74646393	.	C	.	.	LowGQX	END=74646492	GT	./.
chr1	74648220	.	A	.	.	LowGQX	END=74648223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	74648224	.	T	.	.	LowGQX	END=74648294	GT	./.
chr1	74648295	.	T	.	.	LowGQX	END=74648302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	74648303	.	T	.	.	LowGQX	.	GT	./.
chr1	74648304	.	A	.	.	LowGQX	END=74648315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	74648316	.	G	.	.	LowGQX	.	GT	./.
chr1	74648317	.	A	.	.	LowGQX	END=74648352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	74648353	.	T	.	.	LowGQX	.	GT	./.
chr1	74648354	.	A	.	.	LowGQX	END=74648364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	74648365	.	G	.	.	LowGQX	.	GT	./.
chr1	74648366	.	A	.	.	LowGQX	END=74648427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	74648428	.	T	.	.	LowGQX	.	GT	./.
chr1	74648429	.	T	.	.	LowGQX	END=74648443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	74648444	.	T	.	.	LowGQX	END=74648547	GT	./.
chr1	74649118	.	A	.	.	LowGQX	END=74649370	GT	./.
chr1	74663961	.	C	.	.	LowGQX	END=74664110	GT	./.
chr1	74665346	.	A	.	.	LowGQX	END=74665529	GT	./.
chr1	74666353	.	A	.	.	LowGQX	END=74666452	GT	./.
chr1	74666940	.	C	.	.	LowGQX	END=74667098	GT	./.
chr1	74670073	.	A	.	.	LowGQX	END=74671518	GT	./.
chr1	74699025	.	A	.	.	LowGQX	END=74699124	GT	./.
chr1	74701054	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:93:60
chr1	74701055	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:54:60
chr1	74701056	.	A	.	.	PASS	END=74701071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	74701072	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:61:60
chr1	74701073	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:99:60
chr1	74701074	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:66:60
chr1	74701075	.	T	.	.	PASS	END=74701118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr1	74701119	.	G	.	.	PASS	END=74701173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	74701174	.	T	.	.	PASS	END=74701205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	74701784	.	A	.	.	PASS	END=74701816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	74701817	.	T	.	.	PASS	END=74701877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:81:60
chr1	74701878	.	C	.	.	PASS	END=74701932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	74701933	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:54:60
chr1	74701934	.	T	.	.	PASS	END=74701943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	74705592	.	C	.	.	LowGQX	END=74705691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	74715136	.	T	.	.	PASS	END=74715154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	74715155	.	C	.	.	PASS	END=74715235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	74716354	.	A	.	.	PASS	END=74716438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	74716439	.	T	.	.	PASS	END=74716455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	74737280	.	A	.	.	PASS	END=74737358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	74737359	.	C	.	.	PASS	END=74737393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	74737394	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:90:99:60
chr1	74797132	.	A	.	.	PASS	END=74797137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	74797138	.	C	.	.	PASS	END=74797207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	74797208	.	T	.	.	PASS	END=74797220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	74797221	.	G	.	.	PASS	END=74797234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	74801693	.	A	.	.	PASS	END=74801734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:90:60
chr1	74801735	.	T	.	.	PASS	END=74801756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	74801757	.	A	.	.	PASS	END=74801843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	74801844	.	A	.	.	PASS	END=74801872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	74808524	.	A	.	.	PASS	END=74808536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	74808537	.	G	.	.	PASS	END=74808557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	74808558	.	C	.	.	PASS	END=74808661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	74808662	.	C	.	.	PASS	END=74808672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	74808757	.	A	.	.	PASS	END=74808861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	74808862	.	A	.	.	PASS	END=74808902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	74808903	.	T	.	.	PASS	END=74808916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	74818948	.	A	.	.	PASS	END=74818971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	74818972	.	A	.	.	PASS	END=74819040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	74819041	.	A	.	.	PASS	END=74819047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	74819662	.	A	.	.	PASS	END=74819691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:59
chr1	74819692	.	C	.	.	PASS	END=74819712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	74819713	.	A	.	.	PASS	END=74819813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	74819814	.	G	.	.	PASS	END=74819815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	74832934	.	A	.	.	PASS	END=74832961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:85:60
chr1	74832962	.	C	.	.	PASS	END=74833033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	74833520	.	T	.	.	PASS	END=74833568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	74833569	.	C	.	.	PASS	END=74833602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	74833603	.	G	.	.	PASS	END=74833670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	74834703	.	C	.	.	PASS	END=74834734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	74834735	.	G	.	.	PASS	END=74834793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	74834794	.	C	.	.	PASS	END=74834802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	74834870	.	A	.	.	PASS	END=74834969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	74835073	.	A	.	.	PASS	END=74835084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	74835085	.	A	.	.	PASS	END=74835192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	74835193	.	G	.	.	PASS	END=74835231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	74835232	.	G	.	.	PASS	END=74835249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	74835250	.	C	.	.	PASS	END=74835269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	74835270	.	G	.	.	PASS	END=74835271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	74835970	.	A	.	.	PASS	END=74836030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	74836031	.	A	.	.	PASS	END=74836095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	74841218	.	A	.	.	LowGQX	END=74841317	GT	./.
chr1	74867473	.	T	.	.	LowGQX	END=74867640	GT	./.
chr1	74867641	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	74883806	.	T	.	.	LowGQX	END=74883905	GT	./.
chr1	74901741	.	T	.	120.28	PASS	DP=63;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:47:48:90.28:60:90
chr1	74901742	.	T	.	.	PASS	END=74901760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:90:60
chr1	74901761	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:53:60
chr1	74901762	.	A	.	.	PASS	END=74901764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:78:60
chr1	74901765	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:30:60
chr1	74901766	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:99:60
chr1	74901767	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:36:60
chr1	74901768	.	A	.	.	PASS	END=74901773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:87:60
chr1	74901774	.	C	.	114.26	PASS	DP=64;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:46:64:84.27:60:84
chr1	74901775	.	T	.	.	PASS	END=74901789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	74901790	.	G	.	.	PASS	END=74901840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	74902135	.	G	.	.	PASS	END=74902167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	74902168	.	T	.	.	PASS	END=74902232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	74902233	.	T	.	.	PASS	END=74902275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	74902276	.	G	.	.	PASS	END=74902285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	74905172	.	A	.	.	PASS	END=74905203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	74905204	.	A	.	.	PASS	END=74905222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	74905223	.	C	.	.	PASS	END=74905308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	74929123	.	A	.	.	PASS	END=74929150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	74929151	.	C	.	.	PASS	END=74929171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	74929172	.	G	.	.	PASS	END=74929236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	74930318	.	G	.	.	LowGQX	END=74930426	GT	./.
chr1	74937775	.	T	.	.	LowGQX	END=74937885	GT	./.
chr1	74940978	.	C	.	.	LowGQX	END=74941494	GT	./.
chr1	74945836	.	C	.	.	LowGQX	END=74946652	GT	./.
chr1	74948940	.	T	.	.	LowGQX	END=74949011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	74949012	.	A	.	.	LowGQX	END=74949039	GT	./.
chr1	74954853	.	G	.	.	PASS	END=74954903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	74954904	.	A	.	.	PASS	END=74954928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	74954929	.	T	.	.	PASS	END=74954952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	74957779	.	A	.	.	PASS	END=74957786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	74957787	.	T	.	.	PASS	END=74957800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	74957801	.	T	.	.	PASS	END=74957935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	74957936	.	T	.	.	PASS	END=74957951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	74957952	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:106:99:60
chr1	75005908	.	A	.	.	PASS	END=75005943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	75005944	.	T	.	.	PASS	END=75005990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	75005991	.	A	.	.	PASS	END=75006007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	75009528	.	A	.	.	PASS	END=75009588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	75009589	.	G	.	.	PASS	END=75009657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	75009658	.	A	.	.	PASS	END=75009678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:92:60
chr1	75036799	.	T	.	.	LowGQX	END=75036811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	75036812	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	75036813	.	G	.	.	LowGQX	END=75036866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75036867	.	C	.	.	LowGQX	END=75036935	GT	./.
chr1	75036936	.	C	.	.	LowGQX	END=75037066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	75037067	.	C	.	.	LowGQX	END=75037494	GT	./.
chr1	75037495	.	T	.	.	LowGQX	END=75037501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75037502	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	75037503	.	T	.	.	LowGQX	END=75037676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75037677	.	C	.	.	LowGQX	END=75038619	GT	./.
chr1	75038620	.	G	.	.	LowGQX	END=75038700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75038701	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	75038702	.	C	.	.	LowGQX	END=75038808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75038809	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	75038810	.	C	.	.	LowGQX	END=75038821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75038822	.	G	.	.	LowGQX	END=75039177	GT	./.
chr1	75042550	.	A	.	.	LowGQX	END=75042649	GT	./.
chr1	75055297	.	C	.	.	LowGQX	END=75055388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75055389	.	T	.	.	LowGQX	END=75055766	GT	./.
chr1	75065377	.	G	.	.	LowGQX	END=75065605	GT	./.
chr1	75065606	.	T	.	.	LowGQX	END=75065617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75072283	.	A	.	.	LowGQX	END=75072375	GT	./.
chr1	75072376	.	T	.	.	LowGQX	END=75072381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	75072382	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	75072383	.	C	.	.	LowGQX	END=75072423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	75072424	.	G	.	23.48	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.62:60:1
chr1	75072425	.	G	.	.	LowGQX	END=75072497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	75072498	.	T	.	.	LowGQX	.	GT	./.
chr1	75072499	.	C	.	.	LowGQX	END=75072507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	75072508	.	C	.	.	LowGQX	.	GT	./.
chr1	75072509	.	T	.	.	LowGQX	END=75072511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	75072512	.	C	.	.	LowGQX	END=75072588	GT	./.
chr1	75078305	.	A	.	.	LowGQX	END=75078495	GT	./.
chr1	75086416	.	A	.	.	LowGQX	END=75086600	GT	./.
chr1	75097395	.	A	.	.	LowGQX	END=75097614	GT	./.
chr1	75100305	.	A	.	.	LowGQX	END=75100404	GT	./.
chr1	75101962	.	A	.	.	LowGQX	END=75102124	GT	./.
chr1	75106982	.	A	.	.	LowGQX	END=75107192	GT	./.
chr1	75108639	.	C	.	.	LowGQX	END=75108796	GT	./.
chr1	75112309	.	G	.	.	LowGQX	END=75112478	GT	./.
chr1	75114903	.	T	.	.	LowGQX	END=75115002	GT	./.
chr1	75139143	.	A	.	.	LowGQX	END=75139242	GT	./.
chr1	75171978	.	C	.	.	LowGQX	END=75172008	GT	./.
chr1	75172009	.	C	.	.	LowGQX	END=75172046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75172047	.	A	.	.	LowGQX	.	GT	./.
chr1	75172048	.	C	.	.	LowGQX	END=75172143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75172511	.	T	.	.	LowGQX	END=75172680	GT	./.
chr1	75172785	.	A	.	.	LowGQX	END=75172944	GT	./.
chr1	75175780	.	A	.	.	LowGQX	END=75175933	GT	./.
chr1	75180239	.	A	.	.	LowGQX	END=75180338	GT	./.
chr1	75184891	.	A	.	.	LowGQX	END=75184991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	75184992	.	G	.	.	LowGQX	.	GT	./.
chr1	75184993	.	C	.	.	LowGQX	END=75185041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75185042	.	A	.	.	LowGQX	END=75185058	GT	./.
chr1	75188770	.	A	.	.	LowGQX	END=75188956	GT	./.
chr1	75190393	.	A	.	.	LowGQX	END=75190451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	75190452	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	75190453	.	C	.	.	LowGQX	END=75190507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75198927	.	C	.	.	LowGQX	END=75198929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75198930	.	T	.	.	LowGQX	.	GT	./.
chr1	75198931	.	G	.	.	LowGQX	END=75198933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75198934	.	T	.	.	LowGQX	.	GT	./.
chr1	75198935	.	C	.	.	LowGQX	END=75198960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75198961	.	G	.	.	LowGQX	.	GT	./.
chr1	75198962	.	G	.	.	LowGQX	END=75198974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75198975	.	G	.	.	LowGQX	.	GT	./.
chr1	75198976	.	C	.	.	LowGQX	END=75199002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75199003	.	T	.	.	LowGQX	END=75199104	GT	./.
chr1	75202217	.	T	.	.	LowGQX	END=75202316	GT	./.
chr1	75204372	.	A	.	.	LowGQX	END=75204474	GT	./.
chr1	75214363	.	T	.	.	LowGQX	END=75214520	GT	./.
chr1	75217974	.	A	.	.	LowGQX	END=75218111	GT	./.
chr1	75229576	.	A	.	.	LowGQX	END=75229799	GT	./.
chr1	75596349	.	C	.	.	PASS	END=75596354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	75596355	.	G	.	.	PASS	END=75596365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	75596366	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:60:60
chr1	75596367	.	G	.	.	PASS	END=75596370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	75596371	.	G	.	.	PASS	END=75596385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	75596386	.	A	.	.	PASS	END=75596405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	75596406	.	A	.	.	PASS	END=75596478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	75602237	.	T	.	.	PASS	END=75602257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:60
chr1	75602258	.	T	.	.	PASS	END=75602273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	75602274	.	C	.	.	PASS	END=75602287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	75602288	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:60:60
chr1	75602289	.	G	.	.	PASS	END=75602368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	75602369	.	G	.	.	PASS	END=75602383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	75602384	.	G	T	433.77	PASS	BaseQRankSum=-0.392;DP=40;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8935;MQ=60;MQ0=0;MQRankSum=-0.068;QD=10.84;ReadPosRankSum=-1.312;SB=-232.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:20,20:40:99:464,0,398:60:99:0.500
chr1	75602385	.	A	.	.	PASS	END=75602389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	75602390	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:35:24:60
chr1	75602391	.	T	.	.	PASS	END=75602405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:57:60
chr1	75602406	.	A	.	.	PASS	END=75602417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:48:60
chr1	75602418	.	G	.	.	PASS	END=75602424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr1	75602425	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:48:60
chr1	75602734	.	G	.	.	PASS	END=75602743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	75602744	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:35:60
chr1	75602745	.	G	.	.	PASS	END=75602749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	75602750	.	G	.	.	PASS	END=75602778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:80:60
chr1	75602779	.	C	.	.	PASS	END=75602802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	75602803	.	G	.	.	PASS	END=75602821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	75602822	.	C	.	.	PASS	END=75602898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	75602899	.	G	.	.	PASS	END=75602929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	75602930	.	A	.	.	PASS	END=75602957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	75602958	.	C	.	.	PASS	END=75602979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	75602980	.	G	.	.	PASS	END=75602982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	75602983	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:57:60
chr1	75602984	.	G	.	.	PASS	END=75602993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	75602994	.	T	.	.	PASS	END=75602997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	75606619	.	T	.	.	PASS	END=75606675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	75606676	.	G	.	.	PASS	END=75606710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	75606711	.	T	.	.	PASS	END=75606741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	75606742	.	A	.	.	PASS	END=75606784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	75606785	.	A	.	.	PASS	END=75606824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	75606825	.	G	.	.	PASS	END=75606831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	75606832	.	T	.	.	PASS	END=75606842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	75608752	.	T	.	.	PASS	END=75608764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	75608765	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:39:60
chr1	75608766	.	T	.	.	PASS	END=75608781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	75608782	.	C	.	.	PASS	END=75608786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	75608787	.	C	.	.	PASS	END=75608791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	75608792	.	A	.	.	PASS	END=75608805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	75608806	.	G	.	.	PASS	END=75608832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	75608833	.	G	.	.	PASS	END=75608841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	75608842	.	C	.	.	PASS	END=75608878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	75608879	.	G	.	.	PASS	END=75608957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	75608958	.	A	.	.	PASS	END=75608986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	75608987	.	T	.	.	PASS	END=75609019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	75609020	.	A	.	.	PASS	END=75609035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	75609036	.	T	.	.	PASS	END=75609061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	75609062	.	A	.	.	PASS	END=75609073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	75609074	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:54:60
chr1	75609479	.	G	.	.	PASS	END=75609502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	75609503	.	C	.	.	PASS	END=75609553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	75609554	.	C	.	.	PASS	END=75609646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	75609647	.	T	.	.	PASS	END=75609689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	75614221	.	A	.	.	PASS	END=75614270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	75614271	.	G	.	.	PASS	END=75614299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	75614300	.	A	.	.	PASS	END=75614380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	75614380	.	CTT	C,CT	1775.55	PASS	BaseQRankSum=-0.838;DP=134;FS=0.921;HaplotypeScore=440.7722;MQ=60;MQ0=0;MQRankSum=0.879;QD=13.25;ReadPosRankSum=1.420;SB=-802.99	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/2:31,19,1:134:51.85:1853,1228,1924,52,0,174:60:52:0.392
chr1	75614381	.	T	.	.	LowGQX	DP=137;MQ=60;MQ0=0	GT:AD:DP:MQ	.:37:37:60
chr1	75614382	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	.:122:.:60
chr1	75614383	.	T	.	.	PASS	END=75614408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	75622527	.	C	.	.	PASS	END=75622538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	75622539	.	T	.	.	PASS	END=75622576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	75622577	.	G	.	.	PASS	END=75622590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	75622591	.	A	.	.	PASS	END=75622607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	75622608	.	A	.	.	PASS	END=75622615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	75622616	.	C	T	563.95	PASS	BaseQRankSum=1.042;DP=72;Dels=0.00;FS=4.927;HRun=0;HaplotypeScore=10.5211;MQ=60;MQ0=0;MQRankSum=0.728;QD=7.83;ReadPosRankSum=-0.937;SB=-320.59	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:41,30:72:99:594,0,974:60:99:0.423
chr1	75622617	.	G	.	.	PASS	END=75622645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	75622646	.	A	.	.	PASS	END=75622740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	75622741	.	C	.	.	PASS	END=75622758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	75622759	.	A	.	.	PASS	END=75622776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:96:60
chr1	75622777	.	T	.	.	PASS	END=75622784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	75622785	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:45:60
chr1	75622786	.	T	.	.	PASS	END=75622806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	75622807	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:36:60
chr1	75622808	.	T	.	.	PASS	END=75622812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	75626453	.	A	.	.	PASS	END=75626544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	75626545	.	C	.	.	PASS	END=75626616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	75626617	.	A	.	.	PASS	END=75626631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	75669411	.	T	.	.	LowGQX	END=75669518	GT	./.
chr1	75672290	.	T	.	.	LowGQX	END=75672406	GT	./.
chr1	75677146	.	T	.	.	LowGQX	END=75677245	GT	./.
chr1	75679385	.	C	.	.	LowGQX	END=75679484	GT	./.
chr1	75679590	.	T	.	.	LowGQX	END=75679601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75679602	.	A	.	.	LowGQX	.	GT	./.
chr1	75679603	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75679604	.	C	.	.	LowGQX	.	GT	./.
chr1	75679605	.	T	.	.	LowGQX	END=75679610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75679611	.	T	.	.	LowGQX	.	GT	./.
chr1	75679612	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75679613	.	C	.	.	LowGQX	.	GT	./.
chr1	75679614	.	A	.	.	LowGQX	END=75679620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75679621	.	A	.	.	LowGQX	.	GT	./.
chr1	75679622	.	G	.	.	LowGQX	END=75679623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75679624	.	A	.	.	LowGQX	.	GT	./.
chr1	75679625	.	G	.	.	LowGQX	END=75679630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75679631	.	C	.	.	LowGQX	.	GT	./.
chr1	75679632	.	C	.	.	LowGQX	END=75679634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75679635	.	G	.	.	LowGQX	.	GT	./.
chr1	75679636	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75679637	.	A	.	.	LowGQX	.	GT	./.
chr1	75679638	.	T	.	.	LowGQX	END=75679639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75679640	.	A	.	.	LowGQX	.	GT	./.
chr1	75679641	.	T	.	.	LowGQX	END=75679644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75679645	.	A	.	.	LowGQX	.	GT	./.
chr1	75679646	.	A	.	.	LowGQX	END=75679652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75679653	.	A	.	.	LowGQX	END=75679680	GT	./.
chr1	75679681	.	A	.	.	LowGQX	END=75679689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75680277	.	C	.	.	LowGQX	END=75680376	GT	./.
chr1	75681437	.	A	.	.	LowGQX	END=75681557	GT	./.
chr1	75681558	.	A	.	.	LowGQX	END=75681596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75683489	.	T	.	.	LowGQX	END=75683648	GT	./.
chr1	75684173	.	A	.	.	LowGQX	END=75684391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75684392	.	A	.	.	LowGQX	.	GT	./.
chr1	75684393	.	C	.	.	LowGQX	END=75684403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75684404	.	G	.	.	LowGQX	.	GT	./.
chr1	75684405	.	G	.	.	LowGQX	END=75684413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75684414	.	G	.	.	LowGQX	.	GT	./.
chr1	75684415	.	G	.	.	LowGQX	END=75684439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75684936	.	A	.	.	LowGQX	END=75685035	GT	./.
chr1	75685482	.	T	.	.	LowGQX	END=75685581	GT	./.
chr1	75688044	.	A	.	.	LowGQX	END=75688147	GT	./.
chr1	75693409	.	A	.	.	LowGQX	END=75693588	GT	./.
chr1	75699669	.	A	.	.	LowGQX	END=75699828	GT	./.
chr1	75702664	.	T	.	.	LowGQX	END=75702763	GT	./.
chr1	75704196	.	A	.	.	LowGQX	END=75704320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75704321	.	A	.	.	LowGQX	END=75704323	GT	./.
chr1	75707667	.	T	.	.	LowGQX	END=75707681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75707682	.	T	.	.	LowGQX	.	GT	./.
chr1	75707683	.	T	.	.	LowGQX	END=75707689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75707690	.	T	.	.	LowGQX	END=75707766	GT	./.
chr1	75708569	.	A	.	.	LowGQX	END=75708698	GT	./.
chr1	75716823	.	G	.	.	LowGQX	END=75716987	GT	./.
chr1	75740636	.	T	.	.	LowGQX	END=75740640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75740641	.	A	.	.	LowGQX	END=75740722	GT	./.
chr1	75740723	.	C	.	.	LowGQX	END=75740735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75766284	.	T	.	.	LowGQX	END=75766383	GT	./.
chr1	75805244	.	T	.	.	LowGQX	END=75805298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	75805299	.	A	.	.	LowGQX	END=75805343	GT	./.
chr1	75819627	.	C	.	.	LowGQX	END=75819726	GT	./.
chr1	75822833	.	T	.	.	LowGQX	END=75822932	GT	./.
chr1	75862245	.	T	.	.	LowGQX	END=75862344	GT	./.
chr1	75868067	.	C	.	.	LowGQX	END=75868180	GT	./.
chr1	76007077	.	A	.	.	LowGQX	END=76007176	GT	./.
chr1	76081445	.	C	.	.	LowGQX	END=76081604	GT	./.
chr1	76143364	.	A	.	.	LowGQX	END=76143544	GT	./.
chr1	76190338	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:72:60
chr1	76190339	.	A	.	.	PASS	END=76190340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:42:60
chr1	76190341	.	C	.	.	PASS	END=76190355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	76190356	.	C	.	.	PASS	END=76190357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	76190358	.	G	.	.	PASS	END=76190371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	76190372	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:72:60
chr1	76190373	.	C	.	.	PASS	END=76190389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	76190390	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:99:60
chr1	76190391	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:60:60
chr1	76190392	.	C	.	.	PASS	END=76190453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	76190454	.	G	.	.	PASS	END=76190514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	76190515	.	C	.	.	PASS	END=76190555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	76194073	.	G	.	.	PASS	END=76194118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	76194119	.	T	.	.	PASS	END=76194193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	76194194	.	T	.	.	PASS	END=76194224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	76198278	.	A	.	.	PASS	END=76198341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:93:60
chr1	76198342	.	G	.	.	PASS	END=76198407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	76198408	.	A	.	.	PASS	END=76198429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	76198430	.	G	.	.	PASS	END=76198435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	76198436	.	T	C	631.71	PASS	BaseQRankSum=-2.866;DP=67;Dels=0.00;FS=2.237;HRun=0;HaplotypeScore=5.7343;MQ=60;MQ0=0;MQRankSum=0.677;QD=9.43;ReadPosRankSum=-0.221;SB=-289.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,29:67:99:662,0,1180:60:99:0.433
chr1	76198437	.	A	.	.	PASS	END=76198476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	76198477	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:82:99:60
chr1	76198479	.	T	.	.	PASS	END=76198580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	76198581	.	T	.	.	PASS	END=76198615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	76198616	.	T	.	.	PASS	END=76198658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	76198735	.	G	.	.	PASS	END=76198744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr1	76198745	.	T	.	.	PASS	END=76198764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	76198765	.	T	.	.	PASS	END=76198768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	76198769	.	C	.	.	PASS	END=76198779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	76198780	.	G	.	.	PASS	END=76198784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	76198785	.	G	A	200.06	PASS	BaseQRankSum=-0.174;DP=15;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.289;QD=13.34;ReadPosRankSum=-0.174;SB=-30.29	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:8,7:15:99:230,0,266:60:99:0.467
chr1	76198786	.	T	.	.	PASS	END=76198801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	76198802	.	C	.	.	PASS	END=76198808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	76198809	.	C	.	.	PASS	END=76198818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	76198819	.	T	.	.	PASS	END=76198820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	76198821	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	76198822	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	76198823	.	A	.	.	LowGQX	END=76198825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	76198826	.	T	.	.	PASS	END=76198827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	76198828	.	A	.	.	LowGQX	END=76198834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	76199162	.	T	.	.	PASS	END=76199170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	76199171	.	G	.	.	PASS	END=76199177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	76199178	.	A	.	.	PASS	END=76199196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	76199197	.	C	.	.	PASS	END=76199213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	76199214	.	A	.	.	PASS	END=76199330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	76199331	.	T	.	.	PASS	END=76199344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	76199345	.	C	G	1718.21	PASS	BaseQRankSum=0.615;DP=125;Dels=0.00;FS=1.651;HRun=0;HaplotypeScore=11.5735;MQ=60;MQ0=0;MQRankSum=-2.064;QD=13.75;ReadPosRankSum=2.479;SB=-635.41	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:57,64:125:99:1748,0,1328:60:99:0.529
chr1	76199346	.	A	.	.	PASS	END=76199358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	76199359	.	G	.	.	PASS	END=76199364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	76200425	.	A	.	.	PASS	END=76200517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:94:60
chr1	76200518	.	A	.	.	PASS	END=76200555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	76200556	.	T	.	.	PASS	END=76200569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	76200570	.	A	.	.	PASS	END=76200607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	76205614	.	A	.	.	PASS	END=76205619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	76205620	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:25:60
chr1	76205621	.	T	.	.	PASS	END=76205625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	76205626	.	A	.	.	PASS	END=76205629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	76205630	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:31:60
chr1	76205631	.	T	.	.	PASS	END=76205642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	76205643	.	C	A	232.79	PASS	BaseQRankSum=2.137;DP=22;Dels=0.00;FS=4.359;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=-1.002;QD=10.58;ReadPosRankSum=0.134;SB=-51.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,9:22:99:263,0,371:60:99:0.409
chr1	76205644	.	T	.	.	PASS	END=76205653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	76205654	.	A	.	.	PASS	END=76205664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	76205665	.	G	.	.	PASS	END=76205672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	76205673	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:90:60
chr1	76205674	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:60
chr1	76205675	.	T	.	.	PASS	END=76205693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	76205694	.	C	.	.	PASS	END=76205769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	76205770	.	A	.	.	PASS	END=76205781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	76205782	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:39:60
chr1	76205783	.	G	.	.	PASS	END=76205805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	76205806	.	C	.	.	PASS	END=76205836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	76205837	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:27:60
chr1	76205838	.	T	.	.	PASS	END=76205846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	76211440	.	A	.	.	PASS	END=76211468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	76211469	.	A	.	.	PASS	END=76211519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	76211520	.	A	.	.	PASS	END=76211575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	76211576	.	C	.	.	PASS	END=76211626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	76211627	.	C	.	.	PASS	END=76211650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	76215053	.	T	.	.	PASS	END=76215074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	76215075	.	T	.	.	PASS	END=76215093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	76215094	.	T	.	.	PASS	END=76215095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	76215096	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:9:60
chr1	76215097	.	T	.	.	PASS	END=76215109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	76215110	.	A	.	.	PASS	END=76215121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	76215122	.	C	.	.	PASS	END=76215133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	76215134	.	A	.	.	PASS	END=76215238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	76215239	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:39:60
chr1	76215240	.	C	.	.	PASS	END=76215251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	76215252	.	A	.	.	PASS	END=76215261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	76215262	.	A	.	.	PASS	END=76215275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	76215276	.	A	.	.	PASS	END=76215290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:59
chr1	76215291	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:11:59
chr1	76215292	.	A	.	.	PASS	END=76215295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:59
chr1	76216085	.	G	.	.	PASS	END=76216113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	76216114	.	T	.	.	PASS	END=76216168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	76216169	.	G	.	.	PASS	END=76216229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	76216230	.	A	.	.	PASS	END=76216282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	76226756	.	T	.	.	PASS	END=76226813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	76226814	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:33:60
chr1	76226815	.	A	.	.	PASS	END=76226829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	76226830	.	G	.	.	PASS	END=76226840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	76226841	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:60:60
chr1	76226842	.	A	.	.	PASS	END=76226871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	76226872	.	C	.	.	PASS	END=76226915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	76226916	.	A	.	.	PASS	END=76226987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	76226988	.	T	.	.	PASS	END=76227007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	76227008	.	A	.	.	PASS	END=76227021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	76227022	.	A	G	533.02	PASS	BaseQRankSum=-0.271;DP=37;Dels=0.00;FS=1.397;HRun=1;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=1.449;QD=14.41;ReadPosRankSum=-1.226;SB=-265.84	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:16,20:37:99:563,0,420:60:99:0.556
chr1	76227023	.	G	.	.	PASS	END=76227052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	76227053	.	C	.	.	PASS	END=76227061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr1	76227062	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:57:60
chr1	76227063	.	T	.	.	PASS	END=76227084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	76227085	.	C	.	.	PASS	END=76227097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	76227098	.	T	.	.	PASS	END=76227111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	76227112	.	A	.	.	PASS	END=76227128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	76227129	.	A	.	.	PASS	END=76227130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	76228326	.	A	.	.	PASS	END=76228356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	76228357	.	C	.	.	PASS	END=76228405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	76228406	.	A	.	.	PASS	END=76228418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	76228419	.	C	.	.	PASS	END=76228421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	76228422	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:71:60
chr1	76228423	.	A	.	.	PASS	END=76228454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	76228455	.	T	.	.	PASS	END=76228486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	76228487	.	G	A	530.24	PASS	BaseQRankSum=0.559;DP=30;Dels=0.00;FS=2.129;HRun=2;HaplotypeScore=4.7873;MQ=60;MQ0=0;MQRankSum=0.215;QD=17.67;ReadPosRankSum=0.172;SB=-63.41	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:11,19:30:99:560,0,289:60:99:0.633
chr1	76228488	.	C	.	.	PASS	END=76228490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	76228491	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:36:60
chr1	76228492	.	T	.	.	PASS	END=76228496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	76228497	.	C	.	.	PASS	END=76228499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	76234833	.	C	.	.	LowGQX	END=76234932	GT	./.
chr1	76251909	.	C	.	.	LowGQX	END=76252008	GT	./.
chr1	76252687	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	76252688	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	76252689	.	G	.	.	LowGQX	END=76252699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	76252700	.	T	.	.	LowGQX	.	GT	./.
chr1	76252701	.	T	.	.	LowGQX	END=76252722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	76252723	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	76252724	.	T	.	.	LowGQX	END=76252742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	76252743	.	G	.	.	LowGQX	.	GT	./.
chr1	76252744	.	T	.	.	LowGQX	END=76252758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	76252759	.	T	.	.	LowGQX	.	GT	./.
chr1	76252760	.	C	.	.	LowGQX	END=76252795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76252796	.	G	.	.	LowGQX	.	GT	./.
chr1	76252797	.	A	.	.	LowGQX	END=76252800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76252801	.	T	.	.	LowGQX	END=76252845	GT	./.
chr1	76253180	.	A	.	.	LowGQX	END=76253291	GT	./.
chr1	76253566	.	A	.	.	LowGQX	END=76253665	GT	./.
chr1	76254842	.	A	.	.	LowGQX	END=76255043	GT	./.
chr1	76255148	.	A	.	.	LowGQX	END=76255247	GT	./.
chr1	76255585	.	C	.	.	LowGQX	END=76255786	GT	./.
chr1	76256947	.	G	.	.	LowGQX	END=76257046	GT	./.
chr1	76257144	.	A	.	.	LowGQX	END=76257258	GT	./.
chr1	76257864	.	A	.	.	LowGQX	END=76257993	GT	./.
chr1	76259767	.	A	.	.	LowGQX	END=76259919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76259920	.	C	.	.	LowGQX	.	GT	./.
chr1	76260193	.	A	.	.	LowGQX	END=76260194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76260195	.	G	.	.	LowGQX	END=76260204	GT	./.
chr1	76260205	.	T	.	.	LowGQX	END=76260206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76260207	.	C	.	.	LowGQX	.	GT	./.
chr1	76260208	.	A	.	.	LowGQX	END=76260212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76260213	.	T	.	.	LowGQX	END=76260214	GT	./.
chr1	76260215	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76260216	.	T	.	.	LowGQX	.	GT	./.
chr1	76260217	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76260218	.	T	.	.	LowGQX	END=76260220	GT	./.
chr1	76260221	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76260222	.	A	.	.	LowGQX	.	GT	./.
chr1	76260223	.	T	.	.	LowGQX	END=76260226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76260227	.	T	.	.	LowGQX	.	GT	./.
chr1	76260228	.	G	.	.	LowGQX	END=76260237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76260238	.	T	.	.	LowGQX	.	GT	./.
chr1	76260239	.	T	.	.	LowGQX	END=76260244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76260245	.	A	.	.	LowGQX	.	GT	./.
chr1	76260246	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76260247	.	A	.	.	LowGQX	END=76260249	GT	./.
chr1	76260250	.	A	.	.	LowGQX	END=76260252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76260253	.	A	.	.	LowGQX	.	GT	./.
chr1	76260254	.	G	.	.	LowGQX	END=76260262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76260263	.	T	.	.	LowGQX	END=76260337	GT	./.
chr1	76260878	.	T	.	.	LowGQX	END=76260977	GT	./.
chr1	76261027	.	T	.	.	LowGQX	END=76261126	GT	./.
chr1	76262669	.	G	.	.	PASS	END=76262765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	76262766	.	T	.	.	PASS	END=76262825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	76262826	.	C	.	.	PASS	END=76262916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	76269414	.	A	.	.	PASS	END=76269512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	76269513	.	T	.	.	PASS	END=76269600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	76272634	.	T	.	.	PASS	END=76272653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	76272654	.	A	T	645.71	PASS	BaseQRankSum=-0.152;DP=65;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=8.7309;MQ=60;MQ0=0;MQRankSum=-0.930;QD=9.93;ReadPosRankSum=0.429;SB=-279.87	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:36,29:65:99:676,0,943:60:99:0.446
chr1	76272655	.	A	.	.	PASS	END=76272662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	76272663	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:68:60
chr1	76272664	.	A	.	.	PASS	END=76272685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	76272686	.	T	.	.	PASS	END=76272777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	76272778	.	C	.	.	PASS	END=76272820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	76272821	.	G	.	.	PASS	END=76272828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	76276380	.	A	.	.	PASS	END=76276422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	76276423	.	A	.	.	PASS	END=76276539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	76280644	.	A	.	.	PASS	END=76280648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	76280649	.	T	.	.	PASS	END=76280659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	76280660	.	C	.	.	PASS	END=76280782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:87:60
chr1	76280783	.	A	.	.	PASS	END=76280808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	76280809	.	A	.	.	PASS	END=76280814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	76280815	.	A	.	.	PASS	END=76280823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	76282056	.	A	.	.	PASS	END=76282083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	76282084	.	C	.	.	PASS	END=76282185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	76282186	.	C	.	.	PASS	END=76282206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	76282207	.	T	.	.	PASS	END=76282233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	76288072	.	G	.	.	PASS	END=76288157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr1	76288158	.	C	.	.	PASS	END=76288268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	76313878	.	T	.	.	PASS	END=76313973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	76313974	.	A	.	.	PASS	END=76313977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	76333127	.	T	.	.	PASS	END=76333162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	76333163	.	T	G	1864.11	PASS	BaseQRankSum=0.600;DP=156;Dels=0.00;FS=5.971;HRun=2;HaplotypeScore=10.7717;MQ=60;MQ0=0;MQRankSum=0.151;QD=11.95;ReadPosRankSum=0.062;SB=-596.16	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:86,70:156:99:1894,0,2505:60:99:0.449
chr1	76333164	.	G	.	.	PASS	END=76333172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	76333173	.	C	T	2193.53	PASS	BaseQRankSum=4.842;DP=148;Dels=0.00;FS=6.080;HRun=1;HaplotypeScore=11.7187;MQ=60;MQ0=0;MQRankSum=1.087;QD=14.82;ReadPosRankSum=0.685;SB=-468.47	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:74,74:148:99:2224,0,1893:60:99:0.500
chr1	76333174	.	C	.	.	PASS	END=76333273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	76333274	.	G	.	.	PASS	END=76333284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	76333285	.	G	.	.	PASS	END=76333286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr1	76342604	.	A	.	.	PASS	END=76342634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	76342635	.	C	.	.	PASS	END=76342703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	76343812	.	T	.	.	PASS	END=76343931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	76343932	.	T	.	.	PASS	END=76344005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	76344675	.	A	.	.	PASS	END=76344710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	76344711	.	A	T	2056.19	PASS	BaseQRankSum=1.981;DP=137;Dels=0.00;FS=7.484;HRun=1;HaplotypeScore=3.8404;MQ=60;MQ0=0;MQRankSum=-1.815;QD=15.01;ReadPosRankSum=-0.112;SB=-885.70	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:56,81:137:99:2086,0,1515:60:99:0.591
chr1	76344712	.	C	.	.	PASS	END=76344764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	76344765	.	A	.	.	PASS	END=76344778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	76344779	.	T	.	.	PASS	END=76344788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	76344789	.	T	.	.	PASS	END=76344854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	76345683	.	T	.	.	PASS	END=76345684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	76345685	.	T	.	.	PASS	END=76345759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	76345760	.	G	.	.	PASS	END=76345840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	76346929	.	A	.	.	PASS	END=76346959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	76346960	.	A	.	.	PASS	END=76347032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	76347033	.	T	.	.	PASS	END=76347108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	76349304	.	A	.	.	PASS	END=76349382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	76349383	.	C	.	.	PASS	END=76349502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	76349503	.	A	.	.	PASS	END=76349508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	76354884	.	T	.	.	PASS	END=76354943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	76354944	.	G	.	.	PASS	END=76355002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	76355003	.	T	.	.	PASS	END=76355056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	76356379	.	A	.	.	PASS	END=76356450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	76356451	.	A	.	.	PASS	END=76356540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	76356541	.	A	.	.	PASS	END=76356558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	76363590	.	A	.	.	PASS	END=76363616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	76363617	.	T	.	.	PASS	END=76363767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	76363768	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:116:99:60
chr1	76365240	.	A	.	.	PASS	END=76365319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:77:60
chr1	76365320	.	G	.	.	PASS	END=76365352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	76365353	.	G	.	.	PASS	END=76365399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	76365400	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:42:60
chr1	76365401	.	T	.	.	PASS	END=76365412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	76365413	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:45:60
chr1	76365414	.	G	.	.	PASS	END=76365432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	76365433	.	A	.	.	PASS	END=76365450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	76378369	.	T	.	.	PASS	END=76378391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:90:60
chr1	76378392	.	G	.	.	PASS	END=76378422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	76378423	.	G	.	.	PASS	END=76378501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	76378502	.	G	A	1791.20	PASS	BaseQRankSum=1.117;DP=150;Dels=0.00;FS=4.042;HRun=2;HaplotypeScore=8.5223;MQ=60;MQ0=0;MQRankSum=0.855;QD=11.94;ReadPosRankSum=-0.048;SB=-801.95	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:80,69:150:99:1821,0,2053:60:99:0.463
chr1	76378503	.	T	.	.	PASS	END=76378545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	76378546	.	C	.	.	PASS	END=76378573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	76378574	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:85:99:60
chr1	76384635	.	T	.	.	LowGQX	END=76384845	GT	./.
chr1	76387763	.	A	.	.	LowGQX	END=76388046	GT	./.
chr1	76397574	.	A	.	.	LowGQX	END=76397575	GT	./.
chr1	76397576	.	C	.	.	LowGQX	END=76397597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76397598	.	A	.	.	LowGQX	.	GT	./.
chr1	76397599	.	A	.	.	LowGQX	END=76397600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76397601	.	T	.	.	LowGQX	.	GT	./.
chr1	76397602	.	T	.	.	LowGQX	END=76397652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76397653	.	A	.	.	LowGQX	.	GT	./.
chr1	76397654	.	G	.	.	LowGQX	END=76397682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76397683	.	C	.	.	LowGQX	.	GT	./.
chr1	76397684	.	A	.	.	LowGQX	END=76397725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76397726	.	C	.	.	LowGQX	END=76397773	GT	./.
chr1	76397774	.	G	.	.	LowGQX	END=76397803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76397804	.	A	.	.	LowGQX	.	GT	./.
chr1	76397805	.	C	.	.	LowGQX	END=76397819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76397820	.	T	.	.	LowGQX	.	GT	./.
chr1	76397821	.	T	.	.	LowGQX	END=76397857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76397858	.	T	.	.	LowGQX	.	GT	./.
chr1	76397859	.	A	.	.	LowGQX	END=76397866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76397867	.	T	.	.	LowGQX	.	GT	./.
chr1	76397868	.	G	.	.	LowGQX	END=76397923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76397924	.	A	.	.	LowGQX	END=76397978	GT	./.
chr1	76540517	.	C	.	.	LowGQX	END=76540616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	76608505	.	T	.	.	LowGQX	END=76608529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	76608530	.	T	.	.	LowGQX	END=76608535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	76608536	.	C	.	39.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.02:60:9
chr1	76608537	.	T	.	.	LowGQX	END=76608546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	76608547	.	T	.	.	LowGQX	END=76608549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	76608550	.	C	.	.	LowGQX	END=76608572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	76608573	.	C	.	.	LowGQX	END=76608604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	76771558	.	G	.	.	LowGQX	END=76771657	GT	./.
chr1	76773541	.	A	.	.	LowGQX	END=76773640	GT	./.
chr1	76775614	.	T	.	.	LowGQX	END=76775685	GT	./.
chr1	76775686	.	C	.	.	LowGQX	END=76775711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76775712	.	A	.	.	LowGQX	.	GT	./.
chr1	76775713	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	76779310	.	A	.	.	LowGQX	END=76779409	GT	./.
chr1	76779488	.	A	.	.	LowGQX	END=76779686	GT	./.
chr1	76877677	.	T	.	.	LowGQX	END=76878104	GT	./.
chr1	76878636	.	A	.	.	LowGQX	END=76878735	GT	./.
chr1	77042486	.	A	.	.	LowGQX	END=77042585	GT	./.
chr1	77093135	.	A	.	.	LowGQX	END=77093246	GT	./.
chr1	77094303	.	A	.	.	LowGQX	END=77094502	GT	./.
chr1	77333259	.	A	.	.	LowGQX	END=77333418	GT	./.
chr1	77334180	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	77334181	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	77334182	.	C	.	.	LowGQX	END=77334188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	77334189	.	G	.	4.69	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.01:60:0
chr1	77334190	.	T	.	.	LowGQX	END=77334191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	77334192	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	77334193	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	77334194	.	G	.	.	LowGQX	END=77334197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	77334198	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	77334199	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	77334200	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	77334201	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:60
chr1	77334202	.	T	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	77334203	.	T	.	.	LowGQX	END=77334205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	77334206	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	77334207	.	C	.	.	LowGQX	END=77334211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	77334212	.	A	.	.	LowGQX	END=77334213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	77334214	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	77334215	.	A	.	.	LowGQX	END=77334222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:60
chr1	77334223	.	C	.	.	LowGQX	END=77334225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	77334226	.	C	.	13.68	LowGQX	DP=7;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:7:0.10:60:0
chr1	77334227	.	A	.	.	LowGQX	END=77334229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	77334230	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	77334231	.	T	.	.	LowGQX	END=77334238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	77334239	.	G	.	.	LowGQX	END=77334240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	77334241	.	G	.	.	LowGQX	END=77334243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:60
chr1	77334244	.	C	.	.	LowGQX	END=77334249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	77334250	.	C	.	.	LowGQX	END=77334251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:60
chr1	77334252	.	T	.	.	LowGQX	END=77334266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	77334267	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:15:60
chr1	77334268	.	G	.	.	LowGQX	END=77334276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	77334277	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:15:60
chr1	77334278	.	C	.	.	LowGQX	END=77334279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	77334280	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	77334281	.	C	.	.	LowGQX	END=77334293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	77334294	.	A	.	.	LowGQX	END=77334297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:60
chr1	77334298	.	G	.	.	LowGQX	END=77334300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	77334301	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	77334302	.	C	.	.	LowGQX	END=77334303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	77334304	.	G	.	.	LowGQX	END=77334307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:60
chr1	77334308	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	77334309	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	77334310	.	G	.	.	LowGQX	END=77334319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	77334320	.	G	.	.	LowGQX	END=77334323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:60
chr1	77334324	.	C	.	.	LowGQX	END=77334325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	77334326	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr1	77334327	.	G	.	.	LowGQX	END=77334328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	77334329	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:15:60
chr1	77334330	.	G	.	.	LowGQX	END=77334335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	77334336	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr1	77334337	.	G	.	.	LowGQX	END=77334359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	77334360	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:15:60
chr1	77334361	.	G	.	.	LowGQX	END=77334362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	77334363	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:60
chr1	77334364	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	77334365	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	77334366	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	77334367	.	C	.	.	LowGQX	END=77334374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	77334375	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:60
chr1	77334376	.	C	.	.	LowGQX	END=77334384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	77334385	.	A	.	.	LowGQX	END=77334387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	77334388	.	G	.	.	LowGQX	END=77334393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	77334394	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	77334395	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr1	77334396	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	77334397	.	G	.	.	LowGQX	END=77334400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	77334401	.	G	.	.	LowGQX	END=77334403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	77334404	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	77334405	.	A	.	.	LowGQX	END=77334412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	77334413	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	77334414	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	77334415	.	G	.	.	LowGQX	END=77334427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	77334428	.	G	.	.	LowGQX	END=77334429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	77509887	.	A	.	.	LowGQX	END=77509937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77509938	.	A	.	.	LowGQX	END=77510300	GT	./.
chr1	77515941	.	A	.	.	LowGQX	END=77515969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77515970	.	T	.	.	LowGQX	END=77516052	GT	./.
chr1	77528658	.	A	.	.	LowGQX	END=77528893	GT	./.
chr1	77558057	.	G	.	.	LowGQX	END=77558226	GT	./.
chr1	77587953	.	T	.	.	LowGQX	END=77588052	GT	./.
chr1	77594799	.	A	.	.	LowGQX	END=77594801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77594802	.	G	.	.	LowGQX	.	GT	./.
chr1	77594803	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77594804	.	T	.	.	LowGQX	.	GT	./.
chr1	77594805	.	C	.	.	LowGQX	END=77594807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77594808	.	T	.	.	LowGQX	.	GT	./.
chr1	77594809	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77594810	.	C	.	.	LowGQX	END=77594814	GT	./.
chr1	77594815	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77594816	.	T	.	.	LowGQX	END=77594817	GT	./.
chr1	77594818	.	A	.	.	LowGQX	END=77594820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77594821	.	C	.	.	LowGQX	END=77594822	GT	./.
chr1	77594823	.	G	.	.	LowGQX	END=77594824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77594825	.	G	.	.	LowGQX	.	GT	./.
chr1	77594826	.	A	.	.	LowGQX	END=77594828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77594829	.	C	.	.	LowGQX	END=77594830	GT	./.
chr1	77594831	.	C	.	.	LowGQX	END=77594832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77594833	.	C	.	.	LowGQX	END=77594834	GT	./.
chr1	77594835	.	A	.	.	LowGQX	END=77594841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77594842	.	G	.	.	LowGQX	.	GT	./.
chr1	77594843	.	C	.	.	LowGQX	END=77594847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77594848	.	C	.	.	LowGQX	.	GT	./.
chr1	77594849	.	A	.	.	LowGQX	END=77594852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77594853	.	G	.	.	LowGQX	END=77594854	GT	./.
chr1	77594855	.	T	.	.	LowGQX	END=77594859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77594860	.	A	.	.	LowGQX	END=77594862	GT	./.
chr1	77594863	.	T	.	.	LowGQX	END=77594865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:53
chr1	77594866	.	G	.	.	LowGQX	.	GT	./.
chr1	77594867	.	T	.	.	LowGQX	END=77594873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:53
chr1	77594874	.	T	.	.	LowGQX	.	GT	./.
chr1	77594875	.	T	.	.	LowGQX	END=77594882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:53
chr1	77594883	.	A	.	.	LowGQX	.	GT	./.
chr1	77594884	.	C	.	.	LowGQX	END=77594888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:53
chr1	77594889	.	G	.	.	LowGQX	.	GT	./.
chr1	77594890	.	A	.	.	LowGQX	END=77594892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:53
chr1	77594893	.	C	.	.	LowGQX	.	GT	./.
chr1	77594894	.	T	.	.	LowGQX	END=77594895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:53
chr1	77594896	.	C	.	.	LowGQX	.	GT	./.
chr1	77594897	.	T	.	.	LowGQX	END=77594899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:53
chr1	77594900	.	G	.	.	LowGQX	END=77594902	GT	./.
chr1	77594903	.	C	.	.	LowGQX	END=77594909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:53
chr1	77594910	.	G	.	33	LowGQX	DP=2;MQ=53;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:53:3
chr1	77594911	.	G	.	.	LowGQX	END=77594918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:53
chr1	77594919	.	A	.	.	LowGQX	END=77594920	GT	./.
chr1	77594921	.	A	.	.	LowGQX	END=77594924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77594925	.	A	.	.	LowGQX	END=77594927	GT	./.
chr1	77594928	.	G	.	.	LowGQX	END=77594931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77594932	.	C	.	.	LowGQX	END=77594933	GT	./.
chr1	77594934	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77594935	.	A	.	.	LowGQX	.	GT	./.
chr1	77594936	.	G	.	.	LowGQX	END=77594944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77594945	.	A	.	.	LowGQX	END=77594946	GT	./.
chr1	77594947	.	A	.	.	LowGQX	END=77594958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77594959	.	A	.	.	LowGQX	.	GT	./.
chr1	77594960	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77594961	.	A	.	.	LowGQX	END=77594963	GT	./.
chr1	77594964	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77594965	.	A	.	.	LowGQX	.	GT	./.
chr1	77594966	.	G	.	.	LowGQX	END=77594967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77594968	.	G	.	.	LowGQX	.	GT	./.
chr1	77594969	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77594970	.	G	.	.	LowGQX	.	GT	./.
chr1	77594971	.	T	.	.	LowGQX	END=77594972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77594973	.	C	.	.	LowGQX	.	GT	./.
chr1	77594974	.	C	.	.	LowGQX	END=77594975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77594976	.	T	.	.	LowGQX	.	GT	./.
chr1	77594977	.	T	.	.	LowGQX	END=77594979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77594980	.	G	.	.	LowGQX	.	GT	./.
chr1	77594981	.	A	.	.	LowGQX	END=77594982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77594983	.	G	.	.	LowGQX	.	GT	./.
chr1	77594984	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77594985	.	T	.	.	LowGQX	END=77594986	GT	./.
chr1	77594987	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77594988	.	A	.	.	LowGQX	.	GT	./.
chr1	77594989	.	A	.	.	LowGQX	END=77594990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77594991	.	G	.	.	LowGQX	.	GT	./.
chr1	77594992	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77594993	.	T	.	.	LowGQX	END=77594995	GT	./.
chr1	77594996	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77594997	.	G	.	.	LowGQX	.	GT	./.
chr1	77594998	.	T	.	.	LowGQX	END=77595000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77595001	.	G	.	.	LowGQX	.	GT	./.
chr1	77595002	.	C	.	.	LowGQX	END=77595003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77595004	.	G	.	.	LowGQX	END=77595006	GT	./.
chr1	77595007	.	G	.	.	LowGQX	END=77595008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77595009	.	G	.	.	LowGQX	.	GT	./.
chr1	77595010	.	C	.	.	LowGQX	END=77595011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	77595012	.	C	.	.	LowGQX	END=77595181	GT	./.
chr1	77595182	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr1	77595183	.	A	.	.	LowGQX	.	GT	./.
chr1	77595184	.	C	.	.	LowGQX	END=77595231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	77595232	.	A	.	.	LowGQX	.	GT	./.
chr1	77595233	.	C	.	.	LowGQX	END=77595317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	77595318	.	A	.	.	LowGQX	.	GT	./.
chr1	77595319	.	A	.	.	LowGQX	END=77595326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	77595327	.	A	.	.	LowGQX	.	GT	./.
chr1	77595328	.	A	.	.	LowGQX	END=77595332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	77595333	.	A	.	.	LowGQX	END=77595353	GT	./.
chr1	77620120	.	T	.	.	LowGQX	END=77620329	GT	./.
chr1	77626978	.	A	.	.	LowGQX	END=77627092	GT	./.
chr1	77627227	.	A	.	.	LowGQX	END=77627398	GT	./.
chr1	77629479	.	G	.	.	LowGQX	END=77629629	GT	./.
chr1	77632402	.	A	.	.	LowGQX	END=77632476	GT	./.
chr1	77632477	.	C	.	.	LowGQX	END=77632561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77634943	.	A	.	.	LowGQX	END=77635122	GT	./.
chr1	77672321	.	T	.	.	LowGQX	END=77672420	GT	./.
chr1	77676098	.	G	.	.	LowGQX	END=77676197	GT	./.
chr1	77684992	.	T	.	.	LowGQX	END=77685109	GT	./.
chr1	77685110	.	G	.	.	LowGQX	END=77685113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77685114	.	C	.	.	LowGQX	END=77685115	GT	./.
chr1	77685116	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77685117	.	A	.	.	LowGQX	END=77685118	GT	./.
chr1	77685119	.	G	.	.	LowGQX	END=77685131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77685132	.	T	.	.	LowGQX	.	GT	./.
chr1	77685133	.	G	.	.	LowGQX	END=77685134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77685135	.	C	.	.	LowGQX	.	GT	./.
chr1	77685136	.	G	.	.	LowGQX	END=77685141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77685142	.	T	.	.	LowGQX	.	GT	./.
chr1	77747979	.	A	.	.	LowGQX	END=77748078	GT	./.
chr1	77752624	.	A	.	.	LowGQX	END=77752814	GT	./.
chr1	77759476	.	A	.	.	LowGQX	END=77759675	GT	./.
chr1	77763242	.	A	.	.	LowGQX	END=77763415	GT	./.
chr1	77763517	.	A	.	.	LowGQX	END=77763634	GT	./.
chr1	77779480	.	T	.	.	LowGQX	END=77779579	GT	./.
chr1	77806060	.	A	.	.	LowGQX	END=77806255	GT	./.
chr1	77876662	.	C	.	.	LowGQX	END=77876761	GT	./.
chr1	77883262	.	G	.	.	LowGQX	END=77883412	GT	./.
chr1	77948974	.	T	.	.	LowGQX	END=77949055	GT	./.
chr1	77949056	.	T	.	.	LowGQX	END=77949073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77951911	.	T	.	.	LowGQX	END=77951927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77951928	.	T	.	.	LowGQX	END=77952065	GT	./.
chr1	77984247	.	A	.	.	LowGQX	END=77984252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77984253	.	T	.	.	LowGQX	.	GT	./.
chr1	77984254	.	C	.	.	LowGQX	END=77984301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77984302	.	G	.	.	LowGQX	.	GT	./.
chr1	77984303	.	G	.	.	LowGQX	END=77984316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	77984317	.	T	.	.	LowGQX	END=77984414	GT	./.
chr1	77987460	.	T	.	.	LowGQX	END=77987630	GT	./.
chr1	78001530	.	A	.	.	LowGQX	END=78001725	GT	./.
chr1	78024272	.	T	.	.	LowGQX	END=78024327	GT	./.
chr1	78024328	.	C	.	.	LowGQX	END=78024371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78031323	.	T	.	.	LowGQX	END=78031334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	78031335	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	78031336	.	C	.	.	LowGQX	END=78031351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	78031352	.	G	.	.	LowGQX	.	GT	./.
chr1	78031353	.	T	.	.	LowGQX	END=78031392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	78031393	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	78031394	.	T	.	.	LowGQX	END=78031414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	78031415	.	C	.	.	LowGQX	.	GT	./.
chr1	78031416	.	C	.	.	LowGQX	END=78031427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	78031428	.	T	.	.	LowGQX	.	GT	./.
chr1	78031429	.	C	.	.	LowGQX	END=78031439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78031440	.	T	.	.	LowGQX	.	GT	./.
chr1	78031441	.	C	.	.	LowGQX	END=78031444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78031445	.	C	.	.	LowGQX	.	GT	./.
chr1	78031446	.	T	.	.	LowGQX	END=78031450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78031451	.	A	.	.	LowGQX	.	GT	./.
chr1	78031452	.	A	.	.	LowGQX	END=78031455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78031456	.	C	.	.	LowGQX	.	GT	./.
chr1	78031457	.	T	.	.	LowGQX	END=78031461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78031462	.	C	.	.	LowGQX	.	GT	./.
chr1	78031463	.	A	.	.	LowGQX	END=78031464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78031465	.	G	.	.	LowGQX	.	GT	./.
chr1	78031466	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78031467	.	A	.	.	LowGQX	.	GT	./.
chr1	78031468	.	G	.	.	LowGQX	END=78031471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78031764	.	A	.	.	LowGQX	END=78031868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78033975	.	A	.	.	LowGQX	END=78033980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78033981	.	A	.	.	LowGQX	.	GT	./.
chr1	78033982	.	A	.	.	LowGQX	END=78034016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78034017	.	C	.	.	LowGQX	.	GT	./.
chr1	78034018	.	T	.	.	LowGQX	END=78034034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78034035	.	C	.	.	LowGQX	.	GT	./.
chr1	78034036	.	A	.	.	LowGQX	END=78034047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78034048	.	T	.	.	LowGQX	.	GT	./.
chr1	78034049	.	C	.	.	LowGQX	END=78034070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78034071	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	78034072	.	T	.	.	LowGQX	END=78034073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	78034074	.	C	.	.	LowGQX	END=78034075	GT	./.
chr1	78034076	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78034077	.	C	.	.	LowGQX	END=78034078	GT	./.
chr1	78034079	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78034080	.	T	.	.	LowGQX	.	GT	./.
chr1	78034081	.	A	.	.	LowGQX	END=78034082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78034083	.	C	.	.	LowGQX	END=78034084	GT	./.
chr1	78034085	.	T	.	.	LowGQX	END=78034086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78034087	.	T	.	.	LowGQX	END=78034088	GT	./.
chr1	78034089	.	A	.	.	LowGQX	END=78034091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78034092	.	C	.	.	LowGQX	END=78034096	GT	./.
chr1	78034097	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78034098	.	T	.	.	LowGQX	END=78034100	GT	./.
chr1	78034101	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78034102	.	T	.	.	LowGQX	END=78034104	GT	./.
chr1	78034105	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78034106	.	T	.	.	LowGQX	END=78034117	GT	./.
chr1	78034118	.	A	.	.	LowGQX	END=78034119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78034120	.	T	.	.	LowGQX	END=78034126	GT	./.
chr1	78034127	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78034128	.	C	.	.	LowGQX	END=78034136	GT	./.
chr1	78034137	.	A	.	.	LowGQX	END=78034138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78034139	.	T	.	.	LowGQX	.	GT	./.
chr1	78034140	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78034141	.	C	.	.	LowGQX	END=78034142	GT	./.
chr1	78034143	.	T	.	.	LowGQX	END=78034144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78034145	.	C	.	.	LowGQX	END=78034148	GT	./.
chr1	78034149	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78034150	.	T	.	.	LowGQX	END=78034153	GT	./.
chr1	78041751	.	A	.	.	LowGQX	END=78041821	GT	./.
chr1	78041822	.	C	.	.	LowGQX	END=78041840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78041841	.	G	.	.	LowGQX	.	GT	./.
chr1	78041842	.	T	.	.	LowGQX	END=78041844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78041845	.	T	.	.	LowGQX	.	GT	./.
chr1	78041846	.	G	.	.	LowGQX	END=78041855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78041856	.	G	.	.	LowGQX	END=78041857	GT	./.
chr1	78041858	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78041859	.	T	.	.	LowGQX	.	GT	./.
chr1	78041860	.	T	.	.	LowGQX	END=78041866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78041867	.	A	.	.	LowGQX	END=78041868	GT	./.
chr1	78041869	.	G	.	.	LowGQX	END=78041874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78041875	.	T	.	.	LowGQX	.	GT	./.
chr1	78041876	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78041877	.	A	.	.	LowGQX	.	GT	./.
chr1	78041878	.	G	.	.	LowGQX	END=78041879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78041880	.	G	.	.	LowGQX	.	GT	./.
chr1	78041881	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78041882	.	G	.	.	LowGQX	END=78041883	GT	./.
chr1	78041884	.	G	.	.	LowGQX	END=78041891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78041892	.	C	.	.	LowGQX	END=78041893	GT	./.
chr1	78041894	.	G	.	.	LowGQX	END=78041900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	78041901	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	78041902	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	78041903	.	A	.	.	LowGQX	END=78041907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	78044457	.	A	.	.	LowGQX	END=78044556	GT	./.
chr1	78045149	.	A	.	.	LowGQX	END=78045231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78045232	.	C	.	.	LowGQX	.	GT	./.
chr1	78045233	.	C	.	.	LowGQX	END=78045240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78045241	.	C	.	.	LowGQX	END=78045264	GT	./.
chr1	78045265	.	A	.	.	LowGQX	END=78045311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78045312	.	T	.	.	LowGQX	.	GT	./.
chr1	78045313	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78045314	.	C	.	.	LowGQX	.	GT	./.
chr1	78045315	.	T	.	.	LowGQX	END=78045331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78045332	.	C	.	.	LowGQX	.	GT	./.
chr1	78045333	.	A	.	.	LowGQX	END=78045348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78045349	.	G	.	.	LowGQX	.	GT	./.
chr1	78045350	.	T	.	.	LowGQX	END=78045358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78045359	.	T	.	.	LowGQX	.	GT	./.
chr1	78045360	.	T	.	.	LowGQX	END=78045363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78045364	.	T	.	.	LowGQX	.	GT	./.
chr1	78045365	.	A	.	.	LowGQX	END=78045369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78046669	.	G	.	.	LowGQX	END=78046697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	78046698	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	78046699	.	C	.	.	LowGQX	END=78046755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78046756	.	T	.	.	LowGQX	END=78046768	GT	./.
chr1	78047459	.	A	.	.	LowGQX	END=78047578	GT	./.
chr1	78047662	.	A	.	.	LowGQX	END=78047813	GT	./.
chr1	78050200	.	A	.	.	LowGQX	END=78050342	GT	./.
chr1	78097525	.	T	.	.	LowGQX	END=78097527	GT	./.
chr1	78097528	.	C	.	.	LowGQX	END=78097678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78097679	.	T	.	.	LowGQX	END=78097850	GT	./.
chr1	78097851	.	A	.	.	LowGQX	END=78097856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78097857	.	T	.	.	LowGQX	.	GT	./.
chr1	78097858	.	T	.	.	LowGQX	END=78097859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78097860	.	T	.	.	LowGQX	END=78097861	GT	./.
chr1	78097862	.	G	.	.	LowGQX	END=78097882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78097883	.	G	.	.	LowGQX	.	GT	./.
chr1	78097884	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78097885	.	T	.	.	LowGQX	.	GT	./.
chr1	78097886	.	G	.	.	LowGQX	END=78097890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78097891	.	T	.	.	LowGQX	.	GT	./.
chr1	78097892	.	C	.	.	LowGQX	END=78097893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78097894	.	T	.	.	LowGQX	.	GT	./.
chr1	78097895	.	G	.	.	LowGQX	END=78097896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78097897	.	T	.	.	LowGQX	.	GT	./.
chr1	78097898	.	G	.	.	LowGQX	END=78097909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78097910	.	G	.	.	LowGQX	.	GT	./.
chr1	78097911	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78097912	.	A	.	.	LowGQX	.	GT	./.
chr1	78097913	.	T	.	.	LowGQX	END=78097929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78097930	.	T	.	.	LowGQX	.	GT	./.
chr1	78097931	.	T	.	.	LowGQX	END=78097980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78097981	.	T	.	.	LowGQX	END=78097982	GT	./.
chr1	78097983	.	C	.	.	LowGQX	END=78097999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78098000	.	G	.	.	LowGQX	END=78099032	GT	./.
chr1	78099033	.	C	.	.	LowGQX	END=78099041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78105095	.	C	.	.	LowGQX	END=78105194	GT	./.
chr1	78163000	.	A	.	.	LowGQX	END=78163161	GT	./.
chr1	78163533	.	A	.	.	LowGQX	END=78163632	GT	./.
chr1	78167052	.	A	.	.	LowGQX	.	GT	./.
chr1	78167053	.	C	.	.	LowGQX	END=78167054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78167055	.	T	.	.	LowGQX	END=78167056	GT	./.
chr1	78167057	.	C	.	.	LowGQX	END=78167061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78167062	.	T	.	.	LowGQX	.	GT	./.
chr1	78167063	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78167064	.	A	.	.	LowGQX	END=78167065	GT	./.
chr1	78167066	.	C	.	.	LowGQX	END=78167077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78167078	.	T	.	.	LowGQX	END=78167211	GT	./.
chr1	78177418	.	C	.	.	LowGQX	END=78177431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	78177432	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	78177433	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	78177434	.	G	.	.	LowGQX	END=78177438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	78177439	.	A	.	.	LowGQX	.	GT	./.
chr1	78177440	.	A	.	.	LowGQX	END=78177451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	78177452	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	78177453	.	A	.	.	LowGQX	END=78177481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78177482	.	C	.	.	LowGQX	.	GT	./.
chr1	78177483	.	C	.	.	LowGQX	END=78177490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78177491	.	G	.	.	LowGQX	.	GT	./.
chr1	78177492	.	G	.	.	LowGQX	END=78177494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78177495	.	A	.	.	LowGQX	.	GT	./.
chr1	78177496	.	G	.	.	LowGQX	END=78177504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78177505	.	A	.	.	LowGQX	END=78177587	GT	./.
chr1	78178822	.	A	.	.	LowGQX	END=78179032	GT	./.
chr1	78180297	.	A	.	.	LowGQX	END=78180486	GT	./.
chr1	78181425	.	A	.	.	LowGQX	END=78181555	GT	./.
chr1	78183550	.	A	.	.	LowGQX	END=78183734	GT	./.
chr1	78184199	.	A	.	.	LowGQX	END=78184353	GT	./.
chr1	78186765	.	A	.	.	LowGQX	END=78186923	GT	./.
chr1	78187454	.	T	.	.	LowGQX	END=78187541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78187542	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	78187543	.	C	.	.	LowGQX	END=78187547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78187548	.	A	.	.	LowGQX	END=78187609	GT	./.
chr1	78187610	.	C	.	.	LowGQX	END=78187613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78187707	.	A	.	.	LowGQX	END=78187759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78187760	.	T	.	.	LowGQX	END=78187853	GT	./.
chr1	78187854	.	C	.	.	LowGQX	END=78187878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78187879	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	78187880	.	A	.	.	LowGQX	END=78187883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78188964	.	T	.	.	LowGQX	END=78189130	GT	./.
chr1	78191305	.	A	.	.	LowGQX	END=78191449	GT	./.
chr1	78193978	.	A	.	.	LowGQX	END=78194156	GT	./.
chr1	78194157	.	G	.	.	LowGQX	END=78194236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78194237	.	C	.	.	LowGQX	.	GT	./.
chr1	78194238	.	A	.	.	LowGQX	END=78194280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78194281	.	T	.	.	LowGQX	.	GT	./.
chr1	78194282	.	T	.	.	LowGQX	END=78194307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78194308	.	G	.	.	LowGQX	END=78194391	GT	./.
chr1	78194392	.	A	.	.	LowGQX	END=78194399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78195535	.	A	.	.	LowGQX	END=78195634	GT	./.
chr1	78196301	.	A	.	.	LowGQX	END=78196368	GT	./.
chr1	78196369	.	G	.	.	LowGQX	END=78196418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78199960	.	T	.	.	LowGQX	END=78199967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78199968	.	T	.	.	LowGQX	END=78199969	GT	./.
chr1	78199970	.	T	.	.	LowGQX	END=78200004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78200005	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	78200006	.	A	.	.	LowGQX	END=78200017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78200018	.	A	.	.	LowGQX	END=78200116	GT	./.
chr1	78201739	.	A	.	.	LowGQX	END=78201845	GT	./.
chr1	78204948	.	A	.	.	LowGQX	END=78205104	GT	./.
chr1	78206490	.	G	.	.	LowGQX	END=78206643	GT	./.
chr1	78207038	.	T	.	.	LowGQX	END=78207137	GT	./.
chr1	78207300	.	A	.	.	LowGQX	END=78207435	GT	./.
chr1	78211017	.	G	.	.	LowGQX	END=78211042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78211043	.	G	.	.	LowGQX	END=78211176	GT	./.
chr1	78245272	.	G	.	.	LowGQX	END=78245431	GT	./.
chr1	78248921	.	A	.	.	LowGQX	END=78249017	GT	./.
chr1	78249018	.	G	.	.	LowGQX	END=78249038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78267014	.	A	.	.	LowGQX	END=78267213	GT	./.
chr1	78268953	.	A	.	.	LowGQX	END=78269093	GT	./.
chr1	78272658	.	A	.	.	LowGQX	END=78272788	GT	./.
chr1	78279417	.	A	.	.	LowGQX	END=78279554	GT	./.
chr1	78280791	.	A	.	.	LowGQX	END=78280918	GT	./.
chr1	78308990	.	A	.	.	LowGQX	END=78309094	GT	./.
chr1	78324621	.	A	.	.	LowGQX	END=78324781	GT	./.
chr1	78324986	.	G	.	.	LowGQX	END=78325085	GT	./.
chr1	78325663	.	T	.	.	LowGQX	END=78325818	GT	./.
chr1	78326907	.	A	.	.	LowGQX	END=78327009	GT	./.
chr1	78329577	.	A	.	.	LowGQX	END=78329756	GT	./.
chr1	78332000	.	T	.	.	LowGQX	END=78332099	GT	./.
chr1	78338635	.	A	.	.	LowGQX	END=78338807	GT	./.
chr1	78340529	.	A	.	.	LowGQX	END=78340699	GT	./.
chr1	78340700	.	G	.	.	LowGQX	END=78340751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78381741	.	T	.	.	LowGQX	END=78381744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	78381745	.	A	.	.	PASS	END=78381746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	78381747	.	T	.	.	PASS	END=78381752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	78381753	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:12:60
chr1	78381754	.	A	.	.	PASS	END=78381766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	78381767	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:50:60
chr1	78381768	.	A	.	.	PASS	END=78381769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	78381770	.	C	.	.	PASS	END=78381783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	78381784	.	G	.	.	PASS	END=78381869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	78383200	.	T	.	.	PASS	END=78383259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:59
chr1	78383260	.	T	.	.	PASS	END=78383264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	78383265	.	A	.	.	PASS	END=78383297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	78383298	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:68:60
chr1	78383299	.	C	.	.	PASS	END=78383333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	78383334	.	C	.	.	PASS	END=78383348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	78383349	.	G	.	.	PASS	END=78383361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	78383362	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:21:60
chr1	78383363	.	A	.	.	PASS	END=78383385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	78383386	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:36:60
chr1	78383387	.	A	.	.	PASS	END=78383415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	78383416	.	A	.	.	PASS	END=78383466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	78383467	.	G	A	178.82	PASS	BaseQRankSum=2.171;DP=23;Dels=0.00;FS=1.922;HRun=0;HaplotypeScore=1.9466;MQ=60;MQ0=0;MQRankSum=1.169;QD=7.77;ReadPosRankSum=-0.568;SB=-51.55	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:16,7:23:99:209,0,471:60:99:0.304
chr1	78383468	.	T	.	.	PASS	END=78383493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	78383594	.	T	.	.	PASS	END=78383638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	78383639	.	A	.	.	PASS	END=78383701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	78383702	.	G	.	.	PASS	END=78383810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	78383811	.	A	.	.	PASS	END=78383851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	78383852	.	A	.	.	PASS	END=78383919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	78383920	.	A	.	.	PASS	END=78383965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:79:60
chr1	78383966	.	T	.	.	PASS	END=78384009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	78389801	.	C	.	.	LowGQX	END=78389960	GT	./.
chr1	78390822	.	A	.	.	PASS	END=78390942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	78390943	.	T	.	.	PASS	END=78390965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	78392048	.	A	.	.	PASS	END=78392052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	78392053	.	A	.	.	PASS	END=78392059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	78392060	.	T	.	.	PASS	END=78392074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	78392075	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:15:60
chr1	78392076	.	T	.	.	PASS	END=78392099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	78392100	.	A	.	.	PASS	END=78392113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	78392114	.	C	.	.	PASS	END=78392115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	78392116	.	A	.	.	PASS	END=78392123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	78392124	.	C	.	.	PASS	END=78392224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	78392225	.	G	.	.	PASS	END=78392299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	78392300	.	A	.	.	PASS	END=78392347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	78392350	.	G	.	.	PASS	END=78392430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	78392431	.	G	.	.	PASS	END=78392526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	78392527	.	A	.	.	PASS	END=78392560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	78392561	.	A	.	.	PASS	END=78392612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	78392613	.	A	.	.	PASS	END=78392623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	78392624	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:69:60
chr1	78392625	.	C	.	.	PASS	END=78392628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	78394950	.	C	.	.	PASS	END=78394999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	78395000	.	G	.	.	PASS	END=78395098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	78395099	.	A	.	.	PASS	END=78395214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	78395215	.	G	.	.	PASS	END=78395240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	78398916	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	78398917	.	T	.	.	PASS	END=78398924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	78398925	.	G	.	.	PASS	END=78398926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	78398927	.	G	.	.	PASS	END=78398929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	78398930	.	A	.	.	PASS	END=78398936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	78398937	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:21:60
chr1	78398938	.	C	.	.	PASS	END=78398965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	78398966	.	G	.	.	PASS	END=78398982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	78398983	.	C	.	.	PASS	END=78398992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	78398993	.	G	.	.	PASS	END=78399114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	78399115	.	T	.	.	PASS	END=78399143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	78399144	.	C	.	.	PASS	END=78399206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	78399207	.	C	G	864.68	PASS	BaseQRankSum=-0.790;DP=58;Dels=0.00;FS=1.434;HRun=1;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=1.321;QD=14.91;ReadPosRankSum=1.227;SB=-127.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,32:58:99:895,0,705:60:99:0.552
chr1	78399208	.	T	.	.	PASS	END=78399215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	78401457	.	G	.	.	PASS	END=78401531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	78401532	.	G	.	.	PASS	END=78401547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	78401548	.	A	.	.	PASS	END=78401589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	78401590	.	C	.	.	PASS	END=78401687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	78401688	.	G	.	.	PASS	END=78401733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	78401734	.	A	.	.	PASS	END=78401751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	78401752	.	A	.	.	PASS	END=78401769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	78401770	.	T	.	.	PASS	END=78401780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	78407657	.	C	.	.	PASS	END=78407714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	78407715	.	A	.	.	PASS	END=78407736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	78407737	.	A	.	.	PASS	END=78407816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	78407817	.	A	.	.	PASS	END=78407855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	78407856	.	A	.	.	PASS	END=78407872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	78407873	.	A	.	.	PASS	END=78407885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	78407886	.	T	.	.	PASS	END=78407893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	78407894	.	G	.	.	PASS	END=78407895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	78407896	.	A	.	.	PASS	END=78407910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	78407911	.	C	.	.	PASS	END=78407927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	78407928	.	T	.	.	PASS	END=78407931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	78407932	.	C	.	.	PASS	END=78407944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	78408095	.	T	.	.	PASS	END=78408111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	78408112	.	A	.	.	PASS	END=78408119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	78408120	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:66:60
chr1	78408121	.	C	.	.	PASS	END=78408128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	78408129	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:53:60
chr1	78408130	.	A	.	.	PASS	END=78408134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	78408135	.	T	.	.	PASS	END=78408145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	78408146	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:63:60
chr1	78408147	.	A	.	.	PASS	END=78408196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	78408197	.	G	.	.	PASS	END=78408213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	78408214	.	A	.	.	PASS	END=78408229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	78408230	.	C	.	.	PASS	END=78408262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	78408263	.	G	.	.	PASS	END=78408305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	78408306	.	G	.	.	PASS	END=78408373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	78408374	.	T	.	.	PASS	END=78408408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	78408409	.	A	.	.	PASS	END=78408431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	78408432	.	G	.	.	PASS	END=78408447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	78408448	.	T	.	.	PASS	END=78408453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	78408454	.	A	.	.	PASS	END=78408467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:90:60
chr1	78408468	.	G	.	.	PASS	END=78408476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	78408477	.	C	.	.	PASS	END=78408484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	78408485	.	T	.	.	PASS	END=78408491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	78408492	.	T	.	.	LowGQX	END=78408493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	78408494	.	A	.	.	LowGQX	END=78408496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	78408497	.	A	.	.	LowGQX	END=78408499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	78408500	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	78408501	.	A	.	.	LowGQX	END=78408516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	78408517	.	A	.	.	LowGQX	END=78408519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	78408520	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:2:60
chr1	78408521	.	T	.	.	LowGQX	END=78408535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	78408536	.	C	G	24.58	LowGQX;SB	BaseQRankSum=-0.572;DP=8;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.000;QD=3.07;ReadPosRankSum=-1.067;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:6,2:8:54.55:55,0,201:60:25:0.250
chr1	78408537	.	T	.	.	LowGQX	END=78408538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	78408539	.	T	.	.	LowGQX	END=78408544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	78408545	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	78408546	.	T	.	.	LowGQX	END=78408560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	78408561	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	78408562	.	A	.	.	LowGQX	END=78408565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	78408566	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	78408567	.	T	.	.	LowGQX	END=78408574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	78408575	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr1	78408576	.	C	.	.	LowGQX	END=78408589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	78408590	.	G	.	.	LowGQX	END=78408591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	78408592	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr1	78408593	.	T	.	.	LowGQX	END=78408595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	78408596	.	T	.	.	LowGQX	END=78408603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	78408604	.	C	.	.	LowGQX	END=78408617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	78408618	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	78408619	.	A	.	.	LowGQX	END=78408641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	78413168	.	A	.	.	LowGQX	END=78413218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78413219	.	T	.	.	LowGQX	END=78413267	GT	./.
chr1	78414406	.	T	.	.	LowGQX	END=78414505	GT	./.
chr1	78414529	.	G	.	.	LowGQX	END=78414628	GT	./.
chr1	78414838	.	A	.	.	LowGQX	END=78414987	GT	./.
chr1	78420928	.	T	.	.	LowGQX	END=78421027	GT	./.
chr1	78422255	.	A	.	.	LowGQX	END=78422387	GT	./.
chr1	78425799	.	T	.	.	LowGQX	END=78426232	GT	./.
chr1	78428453	.	A	.	.	LowGQX	END=78428617	GT	./.
chr1	78429257	.	G	.	.	LowGQX	END=78429272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78429273	.	A	.	.	LowGQX	.	GT	./.
chr1	78429274	.	A	.	.	LowGQX	END=78429301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78429302	.	A	.	.	LowGQX	.	GT	./.
chr1	78429303	.	T	.	.	LowGQX	END=78429316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78429317	.	T	.	.	LowGQX	.	GT	./.
chr1	78429318	.	C	.	.	LowGQX	END=78429354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78429355	.	T	.	.	LowGQX	.	GT	./.
chr1	78429356	.	A	.	.	LowGQX	END=78429369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78429370	.	C	.	.	LowGQX	END=78429402	GT	./.
chr1	78429745	.	A	.	.	LowGQX	END=78429849	GT	./.
chr1	78429937	.	A	.	.	LowGQX	END=78429943	GT	./.
chr1	78429944	.	T	.	.	LowGQX	END=78429946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78429947	.	A	.	.	LowGQX	END=78429948	GT	./.
chr1	78429949	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78429950	.	T	.	.	LowGQX	.	GT	./.
chr1	78429951	.	G	.	.	LowGQX	END=78429953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78429954	.	T	.	.	LowGQX	.	GT	./.
chr1	78429955	.	G	.	.	LowGQX	END=78429956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78429957	.	G	.	.	LowGQX	.	GT	./.
chr1	78429958	.	A	.	.	LowGQX	END=78429964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78429965	.	G	.	.	LowGQX	END=78429966	GT	./.
chr1	78429967	.	A	.	.	LowGQX	END=78429973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78429974	.	T	.	.	LowGQX	.	GT	./.
chr1	78429975	.	G	.	.	LowGQX	END=78429982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78429983	.	T	.	.	LowGQX	.	GT	./.
chr1	78429984	.	T	.	.	LowGQX	END=78430000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78430001	.	C	.	.	LowGQX	END=78430002	GT	./.
chr1	78430003	.	T	.	.	LowGQX	END=78430005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78430006	.	T	.	.	LowGQX	.	GT	./.
chr1	78430007	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78430008	.	T	.	.	LowGQX	.	GT	./.
chr1	78430009	.	T	.	.	LowGQX	END=78430013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78430014	.	T	.	.	LowGQX	.	GT	./.
chr1	78430015	.	G	.	.	LowGQX	END=78430043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78430329	.	A	.	.	LowGQX	END=78430434	GT	./.
chr1	78430553	.	A	.	.	LowGQX	END=78430655	GT	./.
chr1	78430751	.	A	.	.	LowGQX	END=78430917	GT	./.
chr1	78432357	.	T	.	.	LowGQX	END=78432456	GT	./.
chr1	78432554	.	G	.	.	LowGQX	END=78432653	GT	./.
chr1	78432710	.	A	.	.	LowGQX	END=78432809	GT	./.
chr1	78433281	.	G	.	.	LowGQX	END=78433380	GT	./.
chr1	78433759	.	C	.	.	LowGQX	END=78433976	GT	./.
chr1	78434687	.	A	.	.	LowGQX	END=78434688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78434689	.	T	.	.	LowGQX	.	GT	./.
chr1	78434690	.	A	.	.	LowGQX	END=78434692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78434693	.	T	.	.	LowGQX	.	GT	./.
chr1	78434694	.	A	.	.	LowGQX	END=78434714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78434715	.	G	.	.	LowGQX	.	GT	./.
chr1	78434716	.	A	.	.	LowGQX	END=78434718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78434719	.	G	.	.	LowGQX	.	GT	./.
chr1	78434720	.	G	.	.	LowGQX	END=78434744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78434745	.	T	.	.	LowGQX	END=78434786	GT	./.
chr1	78435605	.	T	.	.	LowGQX	END=78435704	GT	./.
chr1	78444517	.	A	.	.	LowGQX	END=78444529	GT	./.
chr1	78444530	.	C	.	.	LowGQX	END=78444628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	78444629	.	G	.	.	LowGQX	.	GT	./.
chr1	78444630	.	C	.	.	LowGQX	END=78444633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	78444634	.	C	.	.	LowGQX	END=78444690	GT	./.
chr1	78470793	.	A	.	.	LowGQX	END=78471007	GT	./.
chr1	78478733	.	A	.	.	LowGQX	END=78479305	GT	./.
chr1	78481696	.	A	.	.	LowGQX	END=78481933	GT	./.
chr1	78511757	.	C	.	.	LowGQX	END=78511953	GT	./.
chr1	78511954	.	G	.	.	LowGQX	END=78511997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78511998	.	T	.	.	LowGQX	.	GT	./.
chr1	78511999	.	T	.	.	LowGQX	END=78512001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78512002	.	A	.	.	LowGQX	.	GT	./.
chr1	78512003	.	A	.	.	LowGQX	END=78512012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78512013	.	T	.	.	LowGQX	END=78512014	GT	./.
chr1	78512015	.	G	.	.	LowGQX	END=78512016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78512017	.	A	.	.	LowGQX	.	GT	./.
chr1	78512018	.	G	.	.	LowGQX	END=78512020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78512021	.	A	.	.	LowGQX	.	GT	./.
chr1	78512022	.	A	.	.	LowGQX	END=78512028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78512029	.	A	.	.	LowGQX	.	GT	./.
chr1	78512030	.	G	.	.	LowGQX	END=78512031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78512032	.	T	.	.	LowGQX	.	GT	./.
chr1	78512033	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78512034	.	C	.	.	LowGQX	.	GT	./.
chr1	78512035	.	T	.	.	LowGQX	END=78512036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78512037	.	A	.	.	LowGQX	.	GT	./.
chr1	78512038	.	G	.	.	LowGQX	END=78512039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78512040	.	C	.	.	LowGQX	END=78512042	GT	./.
chr1	78512043	.	T	.	.	LowGQX	END=78512057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78512058	.	G	.	.	LowGQX	.	GT	./.
chr1	78512059	.	C	.	.	LowGQX	END=78512062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78512063	.	G	.	.	LowGQX	.	GT	./.
chr1	78512064	.	C	.	.	LowGQX	END=78512065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78512066	.	C	.	.	LowGQX	.	GT	./.
chr1	78512067	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78512068	.	G	.	.	LowGQX	.	GT	./.
chr1	78512069	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78512070	.	G	.	.	LowGQX	.	GT	./.
chr1	78512071	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78512072	.	C	.	.	LowGQX	.	GT	./.
chr1	78512073	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78512074	.	C	.	.	LowGQX	END=78512076	GT	./.
chr1	78512077	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78512078	.	T	.	.	LowGQX	END=78512080	GT	./.
chr1	78512081	.	T	.	.	LowGQX	END=78512082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78512083	.	C	.	.	LowGQX	.	GT	./.
chr1	78512084	.	T	.	.	LowGQX	END=78512086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78546357	.	A	.	.	LowGQX	END=78546495	GT	./.
chr1	78546496	.	A	.	.	LowGQX	END=78546504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78546505	.	C	.	.	LowGQX	.	GT	./.
chr1	78546506	.	A	.	.	LowGQX	END=78546512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78546513	.	C	.	.	LowGQX	.	GT	./.
chr1	78546514	.	A	.	.	LowGQX	END=78546523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78546524	.	G	.	.	LowGQX	END=78546525	GT	./.
chr1	78546526	.	T	.	.	LowGQX	END=78546544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78546545	.	G	.	.	LowGQX	END=78546546	GT	./.
chr1	78560634	.	A	.	.	LowGQX	END=78560818	GT	./.
chr1	78578128	.	A	.	.	LowGQX	END=78578227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	78585075	.	A	.	.	LowGQX	END=78585185	GT	./.
chr1	78591556	.	T	.	.	LowGQX	END=78591655	GT	./.
chr1	78601274	.	A	.	.	LowGQX	END=78601463	GT	./.
chr1	78958427	.	C	.	.	LowGQX	END=78958580	GT	./.
chr1	78958581	.	C	.	.	LowGQX	END=78958622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78958623	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	78958624	.	T	.	.	LowGQX	END=78958835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	78958836	.	A	.	.	LowGQX	END=78959228	GT	./.
chr1	78963487	.	A	.	.	LowGQX	END=78963644	GT	./.
chr1	78997799	.	T	.	.	LowGQX	END=78997958	GT	./.
chr1	79002089	.	A	.	.	LowGQX	END=79002374	GT	./.
chr1	79093600	.	A	.	.	PASS	END=79093628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr1	79093629	.	A	.	.	PASS	END=79093741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:273:99:60
chr1	79093742	.	G	.	.	PASS	END=79093766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr1	79093767	.	T	.	.	PASS	END=79093856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	79093857	.	C	.	.	PASS	END=79093924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	79093925	.	G	.	.	PASS	END=79093974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	79093975	.	T	.	.	PASS	END=79094080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	79094611	.	A	.	.	PASS	END=79094674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	79094675	.	A	.	.	PASS	END=79094684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	79094685	.	G	.	.	PASS	END=79094742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	79094743	.	A	.	.	PASS	END=79094763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	79095403	.	A	.	.	PASS	END=79095419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	79095420	.	T	.	.	PASS	END=79095433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	79095434	.	G	.	.	PASS	END=79095443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	79095444	.	G	.	.	PASS	END=79095573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	79095574	.	T	.	.	PASS	END=79095587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	79095588	.	C	.	.	PASS	END=79095599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	79095600	.	G	.	.	PASS	END=79095602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	79095649	.	T	.	.	PASS	END=79095691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	79095692	.	A	.	.	PASS	END=79095703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	79095704	.	T	.	.	PASS	END=79095748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	79101020	.	A	.	.	PASS	END=79101118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	79101119	.	T	.	.	PASS	END=79101171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	79101172	.	C	.	.	PASS	END=79101193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	79101194	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:84:64:60
chr1	79101195	.	A	.	.	PASS	END=79101199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	79102704	.	G	.	.	PASS	END=79102750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	79102751	.	C	.	.	PASS	END=79102895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	79102896	.	T	.	.	PASS	END=79102914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	79106704	.	A	.	.	PASS	END=79106708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	79106709	.	T	.	.	PASS	END=79106752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	79106753	.	G	.	.	PASS	END=79106802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	79106803	.	C	.	.	PASS	END=79106808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	79107118	.	A	.	.	PASS	END=79107149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	79107150	.	C	.	.	PASS	END=79107216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	79107217	.	T	.	.	PASS	END=79107296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr1	79107428	.	T	.	.	PASS	END=79107506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	79107507	.	T	.	.	PASS	END=79107527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	79115879	.	G	.	.	LowGQX	END=79116339	GT	./.
chr1	79119846	.	T	.	.	LowGQX	END=79119996	GT	./.
chr1	79120697	.	A	.	.	LowGQX	END=79120746	GT	./.
chr1	79120747	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79120748	.	T	.	.	LowGQX	.	GT	./.
chr1	79120749	.	C	.	.	LowGQX	END=79120754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79120755	.	T	.	.	LowGQX	.	GT	./.
chr1	79120756	.	T	.	.	LowGQX	END=79120774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79120775	.	C	.	.	LowGQX	END=79120776	GT	./.
chr1	79120777	.	G	.	.	LowGQX	END=79120788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79120789	.	T	.	.	LowGQX	.	GT	./.
chr1	79120790	.	G	.	.	LowGQX	END=79120825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79120826	.	T	.	.	LowGQX	.	GT	./.
chr1	79120827	.	C	.	.	LowGQX	END=79120895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79120896	.	T	.	.	LowGQX	.	GT	./.
chr1	79121045	.	A	.	.	LowGQX	END=79121198	GT	./.
chr1	79124995	.	A	.	.	LowGQX	END=79125170	GT	./.
chr1	79126237	.	A	.	.	LowGQX	END=79126465	GT	./.
chr1	79128387	.	A	.	.	LowGQX	END=79128602	GT	./.
chr1	79129424	.	A	.	.	LowGQX	END=79129473	GT	./.
chr1	79129474	.	A	.	.	LowGQX	END=79129507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	79129508	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	79129509	.	T	.	.	LowGQX	END=79129523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	79355455	.	T	.	.	LowGQX	END=79355554	GT	./.
chr1	79356737	.	G	.	.	LowGQX	END=79356816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79356817	.	A	.	.	LowGQX	.	GT	./.
chr1	79356818	.	A	.	.	LowGQX	END=79356820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79356821	.	A	.	.	LowGQX	.	GT	./.
chr1	79356822	.	T	.	.	LowGQX	END=79356830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79356831	.	C	.	.	LowGQX	END=79356852	GT	./.
chr1	79356853	.	C	.	.	LowGQX	END=79356856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79356857	.	A	.	.	LowGQX	.	GT	./.
chr1	79356858	.	C	.	.	LowGQX	END=79356894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79356895	.	C	.	.	LowGQX	END=79356910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	79356911	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:2:6.02:60:6
chr1	79356912	.	A	.	.	LowGQX	END=79356920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	79357207	.	A	.	.	LowGQX	END=79357211	GT	./.
chr1	79357212	.	T	.	.	LowGQX	END=79357220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357221	.	A	.	.	LowGQX	END=79357222	GT	./.
chr1	79357223	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357224	.	A	.	.	LowGQX	.	GT	./.
chr1	79357225	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357226	.	A	.	.	LowGQX	END=79357229	GT	./.
chr1	79357230	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357231	.	A	.	.	LowGQX	.	GT	./.
chr1	79357232	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357233	.	T	.	.	LowGQX	END=79357234	GT	./.
chr1	79357235	.	A	.	.	LowGQX	END=79357238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357239	.	A	.	.	LowGQX	END=79357240	GT	./.
chr1	79357241	.	T	.	.	LowGQX	END=79357243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357244	.	A	.	.	LowGQX	END=79357246	GT	./.
chr1	79357247	.	T	.	.	LowGQX	END=79357264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357265	.	T	.	.	LowGQX	.	GT	./.
chr1	79357266	.	G	.	.	LowGQX	END=79357268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357269	.	T	.	.	LowGQX	.	GT	./.
chr1	79357270	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357271	.	T	.	.	LowGQX	END=79357272	GT	./.
chr1	79357273	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357274	.	A	.	.	LowGQX	.	GT	./.
chr1	79357275	.	G	.	.	LowGQX	END=79357276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357277	.	G	.	.	LowGQX	END=79357278	GT	./.
chr1	79357279	.	T	.	.	LowGQX	END=79357284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357285	.	G	.	.	LowGQX	END=79357286	GT	./.
chr1	79357287	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357288	.	A	.	.	LowGQX	.	GT	./.
chr1	79357289	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357290	.	C	.	.	LowGQX	END=79357292	GT	./.
chr1	79357293	.	T	.	.	LowGQX	END=79357298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357299	.	G	.	.	LowGQX	END=79357300	GT	./.
chr1	79357301	.	G	.	.	LowGQX	END=79357304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357305	.	A	.	.	LowGQX	.	GT	./.
chr1	79357306	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357307	.	C	.	.	LowGQX	.	GT	./.
chr1	79357308	.	A	.	.	LowGQX	END=79357310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357311	.	G	.	.	LowGQX	.	GT	./.
chr1	79357312	.	A	.	.	LowGQX	END=79357316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357317	.	C	.	.	LowGQX	.	GT	./.
chr1	79357318	.	C	.	.	LowGQX	END=79357327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357328	.	A	.	.	LowGQX	END=79357329	GT	./.
chr1	79357330	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357331	.	T	.	.	LowGQX	.	GT	./.
chr1	79357332	.	G	.	.	LowGQX	END=79357334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357335	.	G	.	.	LowGQX	.	GT	./.
chr1	79357336	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357337	.	C	.	.	LowGQX	.	GT	./.
chr1	79357338	.	G	.	.	LowGQX	END=79357339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357340	.	G	.	.	LowGQX	.	GT	./.
chr1	79357341	.	A	.	.	LowGQX	END=79357345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357346	.	A	.	.	LowGQX	.	GT	./.
chr1	79357347	.	C	.	.	LowGQX	END=79357350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357351	.	A	.	.	LowGQX	END=79357353	GT	./.
chr1	79357354	.	G	.	.	LowGQX	END=79357358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357359	.	G	.	.	LowGQX	.	GT	./.
chr1	79357360	.	G	.	.	LowGQX	END=79357361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79357362	.	T	.	.	LowGQX	END=79357379	GT	./.
chr1	79358779	.	T	.	.	LowGQX	END=79358930	GT	./.
chr1	79383303	.	T	.	.	LowGQX	END=79383402	GT	./.
chr1	79383513	.	A	.	.	LowGQX	END=79383613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	79383614	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	79383615	.	A	.	.	LowGQX	END=79383662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	79383663	.	C	.	.	LowGQX	END=79383737	GT	./.
chr1	79385866	.	A	.	.	LowGQX	END=79386073	GT	./.
chr1	79387296	.	A	.	.	LowGQX	END=79387473	GT	./.
chr1	79392569	.	A	.	.	LowGQX	END=79392778	GT	./.
chr1	79401928	.	T	.	.	LowGQX	END=79401998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	79401999	.	T	.	.	LowGQX	END=79402147	GT	./.
chr1	79403490	.	A	.	.	LowGQX	END=79403560	GT	./.
chr1	79403561	.	G	.	.	LowGQX	END=79403677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79403763	.	A	.	.	LowGQX	END=79403801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	79403802	.	A	.	.	LowGQX	.	GT	./.
chr1	79403803	.	A	.	.	LowGQX	END=79403843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	79403844	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	79403845	.	T	.	.	LowGQX	END=79403862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79403863	.	T	.	.	LowGQX	.	GT	./.
chr1	79403864	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79403865	.	A	.	.	LowGQX	END=79403966	GT	./.
chr1	79404801	.	G	.	.	LowGQX	END=79404958	GT	./.
chr1	79411957	.	A	.	.	LowGQX	END=79412050	GT	./.
chr1	79412051	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79412052	.	T	.	.	LowGQX	.	GT	./.
chr1	79412053	.	G	.	.	LowGQX	END=79412059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79412060	.	C	.	.	LowGQX	.	GT	./.
chr1	79412061	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79412062	.	A	.	.	LowGQX	.	GT	./.
chr1	79412063	.	T	.	.	LowGQX	END=79412064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79412065	.	A	.	.	LowGQX	.	GT	./.
chr1	79412066	.	G	.	.	LowGQX	END=79412067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79412068	.	A	.	.	LowGQX	END=79412069	GT	./.
chr1	79412070	.	T	.	.	LowGQX	END=79412076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79412077	.	A	.	.	LowGQX	END=79412079	GT	./.
chr1	79412080	.	G	.	.	LowGQX	END=79412081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79412082	.	A	.	.	LowGQX	.	GT	./.
chr1	79412083	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79412084	.	T	.	.	LowGQX	.	GT	./.
chr1	79412085	.	G	.	.	LowGQX	END=79412088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79412089	.	T	.	.	LowGQX	END=79412090	GT	./.
chr1	79412091	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79412092	.	A	.	.	LowGQX	.	GT	./.
chr1	79412093	.	T	.	.	LowGQX	END=79412094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79412095	.	T	.	.	LowGQX	END=79412096	GT	./.
chr1	79412097	.	C	.	.	LowGQX	END=79412098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79412099	.	C	.	.	LowGQX	END=79412100	GT	./.
chr1	79412101	.	T	.	.	LowGQX	END=79412103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79412104	.	A	.	.	LowGQX	.	GT	./.
chr1	79412105	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79412106	.	T	.	.	LowGQX	END=79412107	GT	./.
chr1	79412108	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79412109	.	C	.	.	LowGQX	END=79412111	GT	./.
chr1	79412112	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	79412113	.	T	.	.	LowGQX	.	GT	./.
chr1	79470753	.	A	.	.	LowGQX	END=79470906	GT	./.
chr1	79472219	.	T	.	.	LowGQX	END=79472378	GT	./.
chr1	79474599	.	A	.	.	LowGQX	END=79474698	GT	./.
chr1	82302598	.	G	.	.	LowGQX	END=82302756	GT	./.
chr1	82372700	.	A	.	.	LowGQX	END=82372917	GT	./.
chr1	82402410	.	A	.	.	LowGQX	END=82402523	GT	./.
chr1	82407674	.	C	.	.	LowGQX	END=82407769	GT	./.
chr1	82407770	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	82407771	.	C	.	.	LowGQX	.	GT	./.
chr1	82407772	.	C	.	.	LowGQX	END=82407773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	82408453	.	A	.	.	LowGQX	END=82408552	GT	./.
chr1	82408651	.	A	.	.	LowGQX	END=82409455	GT	./.
chr1	82415871	.	A	.	.	LowGQX	END=82416168	GT	./.
chr1	82416700	.	A	.	.	LowGQX	END=82416706	GT	./.
chr1	82416707	.	G	.	.	LowGQX	END=82416807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	82417639	.	A	.	.	LowGQX	END=82417828	GT	./.
chr1	82418640	.	C	.	.	LowGQX	END=82418739	GT	./.
chr1	82421559	.	A	.	.	LowGQX	END=82421595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	82421596	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	82421597	.	G	.	.	LowGQX	END=82421698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	82421699	.	A	.	.	LowGQX	END=82421746	GT	./.
chr1	82431740	.	A	.	.	LowGQX	END=82431869	GT	./.
chr1	82432086	.	A	.	.	LowGQX	END=82432295	GT	./.
chr1	82433697	.	T	.	.	LowGQX	END=82433917	GT	./.
chr1	82434860	.	A	.	.	LowGQX	END=82435073	GT	./.
chr1	82435925	.	A	.	.	LowGQX	END=82436284	GT	./.
chr1	82437520	.	T	.	.	LowGQX	END=82437619	GT	./.
chr1	82445549	.	A	.	.	LowGQX	END=82445648	GT	./.
chr1	82446451	.	C	.	.	LowGQX	END=82446550	GT	./.
chr1	82446772	.	A	.	.	LowGQX	END=82446871	GT	./.
chr1	82447490	.	A	.	.	LowGQX	END=82447675	GT	./.
chr1	82447676	.	C	.	.	LowGQX	END=82447699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	82450265	.	A	.	.	LowGQX	END=82450307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	82450308	.	C	.	.	LowGQX	END=82450397	GT	./.
chr1	82450941	.	A	.	.	LowGQX	END=82451041	GT	./.
chr1	82452584	.	G	.	.	LowGQX	END=82452713	GT	./.
chr1	82452949	.	A	.	.	LowGQX	END=82453113	GT	./.
chr1	82453452	.	A	.	.	LowGQX	END=82453611	GT	./.
chr1	82455310	.	A	.	.	LowGQX	END=82455409	GT	./.
chr1	82456073	.	A	.	.	LowGQX	END=82456176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	82456177	.	A	.	.	LowGQX	.	GT	./.
chr1	82456178	.	C	.	.	LowGQX	END=82456189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	82456190	.	T	.	.	LowGQX	END=82456630	GT	./.
chr1	82456631	.	C	.	.	LowGQX	END=82456638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	82456639	.	C	.	.	LowGQX	.	GT	./.
chr1	82456640	.	C	.	.	LowGQX	END=82456658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	82456659	.	G	.	.	LowGQX	.	GT	./.
chr1	82456660	.	A	.	.	LowGQX	END=82456688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	82456689	.	G	.	.	LowGQX	.	GT	./.
chr1	82456690	.	G	.	.	LowGQX	END=82456754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	82456755	.	C	.	.	LowGQX	END=82456756	GT	./.
chr1	82456757	.	C	.	.	LowGQX	END=82456766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	82456767	.	G	.	.	LowGQX	.	GT	./.
chr1	82456768	.	A	.	.	LowGQX	END=82456779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	82456780	.	C	.	.	LowGQX	.	GT	./.
chr1	82456781	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	82456782	.	G	.	.	LowGQX	END=82456788	GT	./.
chr1	82456789	.	A	.	.	LowGQX	END=82456797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	82456798	.	A	.	.	LowGQX	.	GT	./.
chr1	82456799	.	A	.	.	LowGQX	END=82456814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	82456815	.	G	.	.	LowGQX	END=82456816	GT	./.
chr1	82456817	.	T	.	.	LowGQX	END=82456831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	82459676	.	G	.	.	LowGQX	END=82459775	GT	./.
chr1	84335593	.	G	.	.	LowGQX	END=84335642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	84335643	.	T	.	.	LowGQX	END=84335767	GT	./.
chr1	84348624	.	G	.	.	LowGQX	END=84348821	GT	./.
chr1	84352915	.	T	.	.	LowGQX	END=84353014	GT	./.
chr1	84355582	.	A	.	.	LowGQX	END=84355678	GT	./.
chr1	84355679	.	C	.	.	LowGQX	END=84355681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84356002	.	A	.	.	LowGQX	END=84356166	GT	./.
chr1	84365796	.	T	.	.	LowGQX	END=84365895	GT	./.
chr1	84369700	.	T	.	.	LowGQX	END=84369852	GT	./.
chr1	84371970	.	A	.	.	LowGQX	END=84372148	GT	./.
chr1	84372150	.	A	.	.	LowGQX	END=84372249	GT	./.
chr1	84373134	.	C	.	.	LowGQX	END=84373346	GT	./.
chr1	84376846	.	A	.	.	LowGQX	END=84377048	GT	./.
chr1	84383281	.	C	.	.	LowGQX	END=84383346	GT	./.
chr1	84383347	.	C	.	.	LowGQX	END=84383370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84383371	.	T	.	.	LowGQX	.	GT	./.
chr1	84383372	.	T	.	.	LowGQX	END=84383380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84385380	.	A	.	.	LowGQX	END=84385519	GT	./.
chr1	84386757	.	G	.	.	LowGQX	END=84386856	GT	./.
chr1	84386928	.	A	.	.	LowGQX	END=84387079	GT	./.
chr1	84394817	.	A	.	.	LowGQX	END=84394916	GT	./.
chr1	84399289	.	A	.	.	LowGQX	END=84399451	GT	./.
chr1	84403533	.	A	.	.	LowGQX	END=84403701	GT	./.
chr1	84408144	.	A	.	.	LowGQX	END=84408185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	84408186	.	A	.	.	LowGQX	END=84408364	GT	./.
chr1	84412805	.	A	.	.	LowGQX	END=84412994	GT	./.
chr1	84414295	.	A	.	.	LowGQX	END=84414394	GT	./.
chr1	84415496	.	G	.	.	LowGQX	END=84415671	GT	./.
chr1	84417526	.	A	.	.	LowGQX	END=84417661	GT	./.
chr1	84417833	.	T	.	.	LowGQX	END=84417932	GT	./.
chr1	84464613	.	C	.	.	LowGQX	END=84464758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84464759	.	A	.	.	LowGQX	END=84464777	GT	./.
chr1	84464778	.	G	.	.	LowGQX	END=84464830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84464831	.	A	.	.	LowGQX	.	GT	./.
chr1	84464832	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84543982	.	T	.	.	LowGQX	END=84544081	GT	./.
chr1	84610023	.	A	.	.	LowGQX	END=84610242	GT	./.
chr1	84630051	.	G	.	.	LowGQX	END=84630150	GT	./.
chr1	84630643	.	T	.	.	LowGQX	END=84630742	GT	./.
chr1	84638974	.	A	.	.	LowGQX	END=84639073	GT	./.
chr1	84640618	.	C	.	.	LowGQX	END=84640777	GT	./.
chr1	84641436	.	A	.	.	LowGQX	END=84641535	GT	./.
chr1	84644717	.	G	.	.	LowGQX	END=84644740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84644741	.	T	.	.	LowGQX	END=84644940	GT	./.
chr1	84647327	.	G	.	.	LowGQX	END=84647426	GT	./.
chr1	84647881	.	A	.	.	LowGQX	END=84648013	GT	./.
chr1	84649718	.	A	.	.	LowGQX	END=84649820	GT	./.
chr1	84650720	.	T	.	.	LowGQX	END=84650930	GT	./.
chr1	84662297	.	A	.	.	LowGQX	END=84662427	GT	./.
chr1	84663410	.	A	.	.	LowGQX	END=84663426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84663427	.	T	.	.	LowGQX	.	GT	./.
chr1	84663428	.	T	.	.	LowGQX	END=84663485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84663486	.	T	.	.	LowGQX	END=84663509	GT	./.
chr1	84668364	.	A	.	.	LowGQX	END=84668490	GT	./.
chr1	84670119	.	C	.	.	LowGQX	END=84670218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679834	.	A	.	.	LowGQX	END=84679835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679836	.	G	.	.	LowGQX	.	GT	./.
chr1	84679837	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679838	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	84679839	.	C	.	.	LowGQX	.	GT	./.
chr1	84679840	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679841	.	A	.	.	LowGQX	.	GT	./.
chr1	84679842	.	T	.	.	LowGQX	END=84679844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679845	.	C	.	.	LowGQX	.	GT	./.
chr1	84679846	.	C	.	.	LowGQX	END=84679849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679850	.	C	.	.	LowGQX	.	GT	./.
chr1	84679851	.	C	.	.	LowGQX	END=84679855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679856	.	C	.	.	LowGQX	.	GT	./.
chr1	84679857	.	A	.	.	LowGQX	END=84679858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679859	.	T	.	.	LowGQX	.	GT	./.
chr1	84679860	.	T	.	.	LowGQX	END=84679862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679863	.	G	.	.	LowGQX	.	GT	./.
chr1	84679864	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679865	.	T	.	.	LowGQX	.	GT	./.
chr1	84679866	.	C	.	.	LowGQX	END=84679871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679872	.	G	.	.	LowGQX	.	GT	./.
chr1	84679873	.	A	.	.	LowGQX	END=84679878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679879	.	T	.	.	LowGQX	.	GT	./.
chr1	84679880	.	A	.	.	LowGQX	END=84679881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679882	.	G	.	.	LowGQX	END=84679883	GT	./.
chr1	84679884	.	A	.	.	LowGQX	END=84679889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679890	.	C	.	.	LowGQX	.	GT	./.
chr1	84679891	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679892	.	G	.	.	LowGQX	.	GT	./.
chr1	84679893	.	C	.	.	LowGQX	END=84679898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679899	.	G	.	.	LowGQX	.	GT	./.
chr1	84679900	.	A	.	.	LowGQX	END=84679901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679902	.	T	.	.	LowGQX	.	GT	./.
chr1	84679903	.	T	.	.	LowGQX	END=84679911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679912	.	G	.	.	LowGQX	END=84679914	GT	./.
chr1	84679915	.	T	.	.	LowGQX	END=84679916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679917	.	G	.	.	LowGQX	.	GT	./.
chr1	84679918	.	G	.	.	LowGQX	END=84679925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679926	.	A	.	.	LowGQX	.	GT	./.
chr1	84679927	.	A	.	.	LowGQX	END=84679930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84679931	.	T	.	.	LowGQX	END=84680002	GT	./.
chr1	84700861	.	A	.	.	LowGQX	END=84701030	GT	./.
chr1	84764136	.	C	.	.	LowGQX	END=84764143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	84764144	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	84764145	.	A	.	.	LowGQX	END=84764151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	84764152	.	G	.	.	LowGQX	.	GT	./.
chr1	84764153	.	G	.	.	LowGQX	END=84764188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	84764189	.	T	.	.	LowGQX	.	GT	./.
chr1	84764190	.	T	.	.	LowGQX	END=84764191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	84764192	.	C	.	.	LowGQX	.	GT	./.
chr1	84764193	.	G	.	.	LowGQX	END=84764196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	84764197	.	G	.	.	LowGQX	.	GT	./.
chr1	84764198	.	G	.	.	LowGQX	END=84764200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	84764201	.	G	.	.	LowGQX	.	GT	./.
chr1	84764202	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	84764203	.	C	.	.	LowGQX	.	GT	./.
chr1	84764204	.	G	.	.	LowGQX	END=84764210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	84764211	.	T	.	.	LowGQX	.	GT	./.
chr1	84764212	.	C	.	.	LowGQX	END=84764213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	84764214	.	G	.	.	LowGQX	.	GT	./.
chr1	84764215	.	C	.	.	LowGQX	END=84764224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	84764225	.	A	.	.	LowGQX	.	GT	./.
chr1	84764226	.	C	.	.	LowGQX	END=84764230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	84764231	.	C	.	.	LowGQX	.	GT	./.
chr1	84764232	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	84764233	.	G	.	.	LowGQX	.	GT	./.
chr1	84764234	.	C	.	.	LowGQX	END=84764237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	84764238	.	G	.	.	LowGQX	.	GT	./.
chr1	84764239	.	C	.	.	LowGQX	END=84764240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	84764241	.	A	.	.	LowGQX	.	GT	./.
chr1	84764242	.	T	.	.	LowGQX	END=84764245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	84764246	.	G	.	.	LowGQX	.	GT	./.
chr1	84764247	.	G	.	.	LowGQX	END=84764257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	84764258	.	A	.	.	LowGQX	END=84764259	GT	./.
chr1	84764260	.	C	.	.	LowGQX	END=84764261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	84764262	.	G	.	.	LowGQX	END=84764263	GT	./.
chr1	84764264	.	C	.	.	LowGQX	END=84764266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84764267	.	T	.	.	LowGQX	.	GT	./.
chr1	84764268	.	G	.	.	LowGQX	END=84764271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84764272	.	C	.	.	LowGQX	.	GT	./.
chr1	84764273	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84764274	.	A	.	.	LowGQX	.	GT	./.
chr1	84764275	.	G	.	.	LowGQX	END=84764276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84764277	.	G	.	.	LowGQX	END=84764280	GT	./.
chr1	84764281	.	G	.	.	LowGQX	END=84764285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84764286	.	G	.	.	LowGQX	END=84764295	GT	./.
chr1	84765264	.	A	.	.	LowGQX	END=84765363	GT	./.
chr1	84768879	.	T	.	.	LowGQX	END=84768896	GT	./.
chr1	84768897	.	A	.	.	LowGQX	END=84768900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84768901	.	A	.	.	LowGQX	.	GT	./.
chr1	84768902	.	A	.	.	LowGQX	END=84768929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84768930	.	G	.	.	LowGQX	.	GT	./.
chr1	84768931	.	A	.	.	LowGQX	END=84768967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84768968	.	A	.	.	LowGQX	.	GT	./.
chr1	84768969	.	A	.	.	LowGQX	END=84768974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84768975	.	G	.	.	LowGQX	.	GT	./.
chr1	84768976	.	T	.	.	LowGQX	END=84768978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84791318	.	A	.	.	LowGQX	END=84791433	GT	./.
chr1	84810518	.	T	.	.	LowGQX	END=84810522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84810523	.	G	.	.	LowGQX	.	GT	./.
chr1	84810524	.	G	.	.	LowGQX	END=84810532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84810533	.	G	.	.	LowGQX	.	GT	./.
chr1	84810534	.	A	.	.	LowGQX	END=84810540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84810541	.	G	.	.	LowGQX	.	GT	./.
chr1	84810542	.	A	.	.	LowGQX	END=84810561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84810562	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	84810563	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84810564	.	C	.	.	LowGQX	.	GT	./.
chr1	84810565	.	C	.	.	LowGQX	END=84810608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84810609	.	C	.	.	LowGQX	.	GT	./.
chr1	84810610	.	A	.	.	LowGQX	END=84810627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84810628	.	G	.	.	LowGQX	.	GT	./.
chr1	84810629	.	A	.	.	LowGQX	END=84810693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84810694	.	A	.	.	LowGQX	END=84810956	GT	./.
chr1	84815312	.	A	.	.	LowGQX	END=84815459	GT	./.
chr1	84853954	.	G	.	.	LowGQX	END=84854053	GT	./.
chr1	84864247	.	A	.	.	LowGQX	END=84864372	GT	./.
chr1	84867583	.	G	.	.	LowGQX	END=84867782	GT	./.
chr1	84874111	.	T	.	.	LowGQX	END=84874210	GT	./.
chr1	84876520	.	G	.	.	LowGQX	END=84876709	GT	./.
chr1	84878031	.	G	.	.	LowGQX	END=84878060	GT	./.
chr1	84878061	.	G	.	.	LowGQX	END=84878080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84878081	.	A	.	.	LowGQX	.	GT	./.
chr1	84878082	.	G	.	.	LowGQX	END=84878218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84878219	.	T	.	.	LowGQX	END=84878231	GT	./.
chr1	84880209	.	A	.	.	LowGQX	END=84880553	GT	./.
chr1	84944963	.	C	.	.	LowGQX	.	GT	./.
chr1	84944964	.	C	.	.	LowGQX	END=84944984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84944985	.	G	.	.	LowGQX	.	GT	./.
chr1	84944986	.	A	.	.	LowGQX	END=84944988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84944989	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	84944990	.	G	.	.	LowGQX	END=84945005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84945006	.	A	.	.	LowGQX	.	GT	./.
chr1	84945007	.	A	.	.	LowGQX	END=84945010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84945011	.	T	.	.	LowGQX	.	GT	./.
chr1	84945012	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84945013	.	A	.	.	LowGQX	.	GT	./.
chr1	84945014	.	A	.	.	LowGQX	END=84945025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84945026	.	C	.	.	LowGQX	.	GT	./.
chr1	84945027	.	T	.	.	LowGQX	END=84945035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84945036	.	A	.	.	LowGQX	END=84945037	GT	./.
chr1	84945038	.	T	.	.	LowGQX	END=84945046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84945047	.	C	.	.	LowGQX	END=84945132	GT	./.
chr1	84945133	.	A	.	.	LowGQX	END=84945146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84945147	.	G	.	.	LowGQX	.	GT	./.
chr1	84945148	.	C	.	.	LowGQX	END=84945150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84945151	.	C	.	.	LowGQX	.	GT	./.
chr1	84945152	.	G	.	.	LowGQX	END=84945155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84945156	.	C	.	.	LowGQX	.	GT	./.
chr1	84945157	.	T	.	.	LowGQX	END=84945162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84945163	.	T	.	.	LowGQX	END=84945165	GT	./.
chr1	84945166	.	A	.	.	LowGQX	END=84945168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84945169	.	C	.	.	LowGQX	.	GT	./.
chr1	84945170	.	G	.	.	LowGQX	END=84945173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84945174	.	G	.	.	LowGQX	.	GT	./.
chr1	84945175	.	A	.	.	LowGQX	END=84945192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84945193	.	G	.	.	LowGQX	.	GT	./.
chr1	84945194	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84946618	.	T	.	.	LowGQX	END=84946717	GT	./.
chr1	84948596	.	A	.	.	LowGQX	END=84948702	GT	./.
chr1	84955314	.	A	.	.	LowGQX	END=84955413	GT	./.
chr1	84956000	.	A	.	.	LowGQX	END=84956157	GT	./.
chr1	84960994	.	T	.	.	LowGQX	END=84961040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84961041	.	A	.	.	LowGQX	.	GT	./.
chr1	84961042	.	A	.	.	LowGQX	END=84961053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84961054	.	A	.	.	LowGQX	.	GT	./.
chr1	84961055	.	G	.	.	LowGQX	END=84961083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84961084	.	T	.	.	LowGQX	END=84961147	GT	./.
chr1	84961563	.	A	.	.	LowGQX	END=84961748	GT	./.
chr1	84961925	.	A	.	.	LowGQX	END=84962055	GT	./.
chr1	84963083	.	T	.	.	LowGQX	END=84963182	GT	./.
chr1	84967526	.	T	.	.	LowGQX	END=84967655	GT	./.
chr1	84971625	.	C	.	.	LowGQX	END=84971784	GT	./.
chr1	84981977	.	A	.	.	LowGQX	END=84982136	GT	./.
chr1	84986268	.	T	.	.	LowGQX	END=84986427	GT	./.
chr1	84988073	.	A	.	.	LowGQX	END=84988190	GT	./.
chr1	84991356	.	T	.	.	LowGQX	END=84991476	GT	./.
chr1	84991477	.	A	.	.	LowGQX	END=84991508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84991528	.	G	.	.	LowGQX	END=84991558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84991559	.	T	.	.	LowGQX	.	GT	./.
chr1	84991560	.	A	.	.	LowGQX	END=84991625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84991626	.	T	.	.	LowGQX	END=84991770	GT	./.
chr1	84991771	.	G	.	.	LowGQX	END=84991809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	84998543	.	C	.	.	LowGQX	END=84998657	GT	./.
chr1	84999312	.	A	.	.	LowGQX	END=84999470	GT	./.
chr1	85009885	.	A	.	.	LowGQX	END=85009904	GT	./.
chr1	85009905	.	C	.	.	LowGQX	END=85009987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85011247	.	T	.	.	LowGQX	END=85011442	GT	./.
chr1	85014469	.	C	.	.	LowGQX	END=85014647	GT	./.
chr1	85016115	.	A	.	.	LowGQX	END=85016214	GT	./.
chr1	85018658	.	A	.	.	LowGQX	END=85018812	GT	./.
chr1	85020680	.	G	.	.	LowGQX	END=85020884	GT	./.
chr1	85028938	.	A	.	.	LowGQX	END=85028957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85028958	.	A	.	.	LowGQX	END=85029103	GT	./.
chr1	85029366	.	T	.	.	LowGQX	END=85029517	GT	./.
chr1	85031502	.	A	.	.	LowGQX	END=85031697	GT	./.
chr1	85035542	.	A	.	.	LowGQX	END=85035663	GT	./.
chr1	85035664	.	A	.	.	LowGQX	END=85035686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85035687	.	G	.	.	LowGQX	.	GT	./.
chr1	85035688	.	G	.	.	LowGQX	END=85035690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85035691	.	A	.	.	LowGQX	.	GT	./.
chr1	85035692	.	T	.	.	LowGQX	END=85035726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85035727	.	T	.	.	LowGQX	.	GT	./.
chr1	85035728	.	T	.	.	LowGQX	END=85035735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85035736	.	T	.	.	LowGQX	.	GT	./.
chr1	85035737	.	A	.	.	LowGQX	END=85035742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85035743	.	T	.	.	LowGQX	.	GT	./.
chr1	85035744	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	85035745	.	T	.	.	LowGQX	END=85035764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85035765	.	T	.	.	LowGQX	.	GT	./.
chr1	85035766	.	G	.	.	LowGQX	END=85035795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85035796	.	C	.	.	LowGQX	.	GT	./.
chr1	85035797	.	A	.	.	LowGQX	END=85035814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85035815	.	T	.	.	LowGQX	END=85035861	GT	./.
chr1	85036263	.	A	.	.	LowGQX	END=85036405	GT	./.
chr1	85039868	.	A	.	.	LowGQX	END=85039901	GT	./.
chr1	85039902	.	G	.	.	LowGQX	END=85039954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85039955	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	85039956	.	A	.	.	LowGQX	END=85039998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	85039999	.	G	.	.	LowGQX	END=85040007	GT	./.
chr1	85040008	.	G	.	.	LowGQX	END=85040068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85040069	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	85040070	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	85040071	.	G	.	.	LowGQX	END=85040100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85096296	.	G	.	.	LowGQX	END=85096546	GT	./.
chr1	85096547	.	G	.	.	LowGQX	END=85096570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85097020	.	G	.	.	LowGQX	END=85097119	GT	./.
chr1	85097292	.	C	.	.	LowGQX	END=85097391	GT	./.
chr1	85113114	.	G	.	.	LowGQX	END=85113292	GT	./.
chr1	85115575	.	T	.	.	LowGQX	END=85115674	GT	./.
chr1	85116008	.	T	.	.	LowGQX	END=85116212	GT	./.
chr1	85117564	.	A	.	.	LowGQX	END=85117566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85117567	.	T	.	.	LowGQX	END=85117682	GT	./.
chr1	85121147	.	C	.	.	LowGQX	END=85121271	GT	./.
chr1	85121513	.	A	.	.	LowGQX	END=85121690	GT	./.
chr1	85122029	.	A	.	.	LowGQX	END=85122169	GT	./.
chr1	85123999	.	A	.	.	LowGQX	END=85124153	GT	./.
chr1	85127879	.	A	.	.	LowGQX	END=85128060	GT	./.
chr1	85128126	.	A	.	.	LowGQX	END=85128225	GT	./.
chr1	85130098	.	A	.	.	LowGQX	END=85130237	GT	./.
chr1	85131802	.	C	.	.	LowGQX	END=85131961	GT	./.
chr1	85135362	.	A	.	.	LowGQX	END=85135578	GT	./.
chr1	85136327	.	A	.	.	LowGQX	END=85136500	GT	./.
chr1	85136832	.	T	.	.	LowGQX	END=85136931	GT	./.
chr1	85279527	.	G	.	.	LowGQX	END=85279856	GT	./.
chr1	85331066	.	A	.	.	LowGQX	END=85331115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85331116	.	G	.	.	LowGQX	END=85331805	GT	./.
chr1	85392337	.	T	.	.	LowGQX	END=85392436	GT	./.
chr1	85395239	.	A	.	.	LowGQX	END=85395364	GT	./.
chr1	85397043	.	A	.	.	LowGQX	END=85397253	GT	./.
chr1	85403436	.	A	.	.	LowGQX	END=85403562	GT	./.
chr1	85403662	.	A	.	.	LowGQX	END=85403767	GT	./.
chr1	85405234	.	A	.	.	LowGQX	END=85405413	GT	./.
chr1	85406560	.	A	.	.	LowGQX	END=85406676	GT	./.
chr1	85412714	.	A	.	.	LowGQX	END=85412716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85412717	.	A	.	.	LowGQX	END=85412817	GT	./.
chr1	85417924	.	G	.	.	LowGQX	END=85418024	GT	./.
chr1	85418122	.	T	.	.	LowGQX	END=85418139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85418140	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	85418141	.	A	.	.	LowGQX	END=85418221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85422082	.	A	.	.	LowGQX	END=85422084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	85422085	.	G	.	.	LowGQX	.	GT	./.
chr1	85422086	.	G	.	.	LowGQX	END=85422104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	85422105	.	C	.	.	LowGQX	.	GT	./.
chr1	85422106	.	T	.	.	LowGQX	END=85422119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85422120	.	C	.	.	LowGQX	.	GT	./.
chr1	85422121	.	A	.	.	LowGQX	END=85422123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85422124	.	G	.	.	LowGQX	END=85422125	GT	./.
chr1	85422126	.	C	.	.	LowGQX	END=85422127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85422128	.	T	.	.	LowGQX	.	GT	./.
chr1	85422129	.	T	.	.	LowGQX	END=85422143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85422144	.	T	.	.	LowGQX	.	GT	./.
chr1	85422145	.	C	.	.	LowGQX	END=85422154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85422155	.	G	.	.	LowGQX	.	GT	./.
chr1	85422156	.	G	.	.	LowGQX	END=85422163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85422164	.	G	.	.	LowGQX	.	GT	./.
chr1	85422165	.	T	.	.	LowGQX	END=85422171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85422172	.	C	.	.	LowGQX	.	GT	./.
chr1	85422173	.	T	.	.	LowGQX	END=85422184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85422185	.	T	.	.	LowGQX	.	GT	./.
chr1	85422186	.	T	.	.	LowGQX	END=85422187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85422188	.	C	.	.	LowGQX	.	GT	./.
chr1	85422189	.	A	.	.	LowGQX	END=85422200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85422201	.	C	.	.	LowGQX	.	GT	./.
chr1	85422202	.	A	.	.	LowGQX	END=85422219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85422220	.	T	.	.	LowGQX	END=85422269	GT	./.
chr1	85424190	.	T	.	.	LowGQX	END=85424347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85424348	.	G	.	.	LowGQX	END=85424387	GT	./.
chr1	85431230	.	A	.	.	LowGQX	END=85431333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85431334	.	C	.	.	LowGQX	END=85431393	GT	./.
chr1	85462468	.	A	.	.	LowGQX	END=85462567	GT	./.
chr1	85484804	.	A	.	.	LowGQX	END=85484942	GT	./.
chr1	85486751	.	A	.	.	LowGQX	END=85486961	GT	./.
chr1	85487751	.	A	.	.	LowGQX	END=85487828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85487829	.	A	.	.	LowGQX	.	GT	./.
chr1	85487830	.	A	.	.	LowGQX	END=85487833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85487834	.	G	.	.	LowGQX	.	GT	./.
chr1	85487835	.	A	.	.	LowGQX	END=85487860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85487861	.	G	.	.	LowGQX	.	GT	./.
chr1	85487862	.	G	.	.	LowGQX	END=85487877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85487920	.	C	.	.	LowGQX	END=85488029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85488030	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	85488031	.	A	.	.	LowGQX	END=85488073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85488074	.	T	.	.	LowGQX	END=85488085	GT	./.
chr1	85491564	.	T	.	.	LowGQX	END=85491773	GT	./.
chr1	85491833	.	C	.	.	LowGQX	END=85491969	GT	./.
chr1	85494787	.	A	.	.	LowGQX	END=85494890	GT	./.
chr1	85498377	.	A	.	.	LowGQX	END=85498477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85498548	.	C	.	.	LowGQX	END=85498565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85498566	.	C	.	.	LowGQX	.	GT	./.
chr1	85498567	.	A	.	.	LowGQX	END=85498574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85498575	.	G	.	.	LowGQX	.	GT	./.
chr1	85498576	.	T	.	.	LowGQX	END=85498583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85498584	.	A	.	.	LowGQX	.	GT	./.
chr1	85498585	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85498586	.	T	.	.	LowGQX	.	GT	./.
chr1	85498587	.	T	.	.	LowGQX	END=85498598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85498599	.	C	.	.	LowGQX	END=85498600	GT	./.
chr1	85498601	.	C	.	.	LowGQX	END=85498604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85498605	.	G	.	.	LowGQX	END=85498606	GT	./.
chr1	85498607	.	G	.	.	LowGQX	END=85498609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85498610	.	A	.	.	LowGQX	.	GT	./.
chr1	85498611	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85498612	.	G	.	.	LowGQX	END=85498613	GT	./.
chr1	85498614	.	T	.	.	LowGQX	END=85498615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85498616	.	C	.	.	LowGQX	.	GT	./.
chr1	85498617	.	A	.	.	LowGQX	END=85498618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85498619	.	C	.	.	LowGQX	.	GT	./.
chr1	85498620	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85498621	.	G	.	.	LowGQX	.	GT	./.
chr1	85498622	.	G	.	.	LowGQX	END=85498624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85498625	.	C	.	.	LowGQX	END=85498626	GT	./.
chr1	85498627	.	A	.	.	LowGQX	END=85498631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85498632	.	G	.	.	LowGQX	.	GT	./.
chr1	85498633	.	A	.	.	LowGQX	END=85498639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85498640	.	C	.	.	LowGQX	END=85498641	GT	./.
chr1	85498642	.	G	.	.	LowGQX	END=85498647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85499779	.	A	.	.	LowGQX	END=85499936	GT	./.
chr1	85506671	.	A	.	.	LowGQX	END=85506779	GT	./.
chr1	85506780	.	T	.	.	LowGQX	END=85506862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510814	.	A	.	.	LowGQX	END=85510829	GT	./.
chr1	85510830	.	T	.	.	LowGQX	END=85510872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510873	.	A	.	.	LowGQX	.	GT	./.
chr1	85510874	.	C	.	.	LowGQX	END=85510878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510879	.	A	.	.	LowGQX	.	GT	./.
chr1	85510880	.	G	.	.	LowGQX	END=85510881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510882	.	C	.	.	LowGQX	END=85510883	GT	./.
chr1	85510884	.	A	.	.	LowGQX	END=85510891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510892	.	T	.	.	LowGQX	.	GT	./.
chr1	85510893	.	C	.	.	LowGQX	END=85510897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510898	.	G	.	.	LowGQX	.	GT	./.
chr1	85510899	.	G	.	.	LowGQX	END=85510903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510904	.	A	.	.	LowGQX	END=85510905	GT	./.
chr1	85510906	.	G	.	.	LowGQX	END=85510920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510921	.	T	.	.	LowGQX	END=85510923	GT	./.
chr1	85510924	.	T	.	.	LowGQX	END=85510926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510927	.	C	.	.	LowGQX	END=85510928	GT	./.
chr1	85510929	.	T	.	.	LowGQX	END=85510930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510931	.	A	.	.	LowGQX	.	GT	./.
chr1	85510932	.	T	.	.	LowGQX	END=85510936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510937	.	T	.	.	LowGQX	.	GT	./.
chr1	85510938	.	C	.	.	LowGQX	END=85510939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510940	.	T	.	.	LowGQX	.	GT	./.
chr1	85510941	.	C	.	.	LowGQX	END=85510943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510944	.	A	.	.	LowGQX	.	GT	./.
chr1	85510945	.	T	.	.	LowGQX	END=85510947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510948	.	A	.	.	LowGQX	.	GT	./.
chr1	85510949	.	A	.	.	LowGQX	END=85510952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510953	.	C	.	.	LowGQX	.	GT	./.
chr1	85510954	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510955	.	T	.	.	LowGQX	END=85510956	GT	./.
chr1	85510957	.	A	.	.	LowGQX	END=85510958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510959	.	A	.	.	LowGQX	.	GT	./.
chr1	85510960	.	T	.	.	LowGQX	END=85510964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510965	.	A	.	.	LowGQX	.	GT	./.
chr1	85510966	.	T	.	.	LowGQX	END=85510971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510972	.	C	.	.	LowGQX	END=85510974	GT	./.
chr1	85510975	.	G	.	.	LowGQX	END=85510977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510978	.	A	.	.	LowGQX	END=85510979	GT	./.
chr1	85510980	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85510981	.	A	.	.	LowGQX	END=85511045	GT	./.
chr1	85537553	.	A	.	.	LowGQX	END=85537706	GT	./.
chr1	85538655	.	A	.	.	LowGQX	END=85538806	GT	./.
chr1	85546905	.	T	.	.	LowGQX	END=85546912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	85546913	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	85546914	.	T	.	.	LowGQX	END=85546948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85546949	.	A	.	.	LowGQX	END=85547100	GT	./.
chr1	85547981	.	A	.	.	LowGQX	END=85548040	GT	./.
chr1	85548041	.	A	.	.	LowGQX	END=85548082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85548083	.	T	.	.	LowGQX	.	GT	./.
chr1	85548084	.	A	.	.	LowGQX	END=85548140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85550227	.	A	.	.	LowGQX	END=85550380	GT	./.
chr1	85551512	.	A	.	.	LowGQX	END=85551513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85551514	.	A	.	.	LowGQX	.	GT	./.
chr1	85551515	.	T	.	.	LowGQX	END=85551520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85551521	.	A	.	.	LowGQX	.	GT	./.
chr1	85551522	.	T	.	.	LowGQX	END=85551539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85551540	.	A	.	.	LowGQX	.	GT	./.
chr1	85551541	.	A	.	.	LowGQX	END=85551693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85551694	.	A	.	.	LowGQX	END=85551715	GT	./.
chr1	85555797	.	A	.	.	LowGQX	END=85555908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85555909	.	C	.	.	LowGQX	END=85555917	GT	./.
chr1	85559139	.	A	.	.	LowGQX	END=85559321	GT	./.
chr1	85559322	.	A	.	.	LowGQX	END=85559333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85559435	.	C	.	.	LowGQX	END=85559451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85559452	.	A	G	14.90	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.45;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	85559453	.	C	.	.	LowGQX	END=85559534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85560112	.	A	.	.	LowGQX	END=85560240	GT	./.
chr1	85561609	.	T	.	.	LowGQX	END=85561689	GT	./.
chr1	85561690	.	G	.	.	LowGQX	END=85561708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85563246	.	T	.	.	LowGQX	END=85563345	GT	./.
chr1	85564211	.	A	.	.	LowGQX	END=85564380	GT	./.
chr1	85570194	.	T	.	.	LowGQX	END=85570293	GT	./.
chr1	85573714	.	A	.	.	LowGQX	END=85573862	GT	./.
chr1	85575725	.	C	.	.	LowGQX	END=85575824	GT	./.
chr1	85583410	.	A	.	.	LowGQX	END=85583544	GT	./.
chr1	85587416	.	A	.	.	LowGQX	END=85587515	GT	./.
chr1	85589802	.	A	.	.	LowGQX	END=85589936	GT	./.
chr1	85592192	.	A	.	.	LowGQX	END=85592400	GT	./.
chr1	85594387	.	T	.	.	LowGQX	END=85594538	GT	./.
chr1	85595671	.	A	.	.	LowGQX	END=85595801	GT	./.
chr1	85598536	.	A	.	.	LowGQX	END=85598664	GT	./.
chr1	85598665	.	A	.	.	LowGQX	END=85598683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85624422	.	A	.	.	LowGQX	END=85624535	GT	./.
chr1	85624536	.	A	.	.	LowGQX	END=85624548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85624549	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	85624550	.	T	.	.	LowGQX	END=85624821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85624822	.	C	.	.	LowGQX	END=85624941	GT	./.
chr1	85630208	.	C	.	.	LowGQX	END=85630440	GT	./.
chr1	85634686	.	T	.	.	LowGQX	END=85634908	GT	./.
chr1	85643828	.	C	.	.	LowGQX	END=85643955	GT	./.
chr1	85647733	.	T	.	.	LowGQX	END=85648883	GT	./.
chr1	85655739	.	C	.	.	LowGQX	END=85655775	GT	./.
chr1	85655776	.	C	.	.	LowGQX	END=85655873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85655874	.	C	.	.	LowGQX	.	GT	./.
chr1	85655875	.	G	.	.	LowGQX	END=85655915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85655916	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	85655917	.	A	.	.	LowGQX	END=85655925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85655926	.	T	.	.	LowGQX	END=85656017	GT	./.
chr1	85656018	.	C	.	.	LowGQX	END=85656022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85656023	.	G	.	.	LowGQX	.	GT	./.
chr1	85656024	.	G	.	.	LowGQX	END=85656168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85656169	.	A	.	.	LowGQX	END=85656435	GT	./.
chr1	85665924	.	A	.	.	LowGQX	END=85666679	GT	./.
chr1	85718240	.	C	.	.	LowGQX	END=85718398	GT	./.
chr1	85723090	.	G	.	.	LowGQX	END=85723189	GT	./.
chr1	85724205	.	A	.	.	LowGQX	END=85724407	GT	./.
chr1	85725039	.	A	.	.	LowGQX	END=85725311	GT	./.
chr1	85725312	.	G	.	.	LowGQX	END=85725318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	85733308	.	T	.	.	PASS	END=85733332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	85733333	.	A	.	.	PASS	END=85733408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	85733409	.	A	.	.	PASS	END=85733560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	85733561	.	T	.	.	PASS	END=85733660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	85733661	.	T	.	.	PASS	END=85733667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	85736299	.	A	.	.	PASS	END=85736377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	85736378	.	T	.	.	PASS	END=85736422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	85736423	.	T	.	.	PASS	END=85736571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	85736572	.	A	.	.	PASS	END=85736573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	85736574	.	G	.	.	PASS	END=85736591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	85741898	.	T	.	.	PASS	END=85741920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	85741921	.	G	C	2359.97	PASS	BaseQRankSum=1.119;DP=222;Dels=0.00;FS=12.763;HRun=1;HaplotypeScore=25.7773;MQ=60;MQ0=0;MQRankSum=-0.904;QD=10.63;ReadPosRankSum=-2.194;SB=-1076.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:127,95:222:99:2390,0,3226:60:99:0.428
chr1	85741922	.	T	.	.	PASS	END=85741952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	85741953	.	G	.	.	PASS	END=85742001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	85742002	.	C	.	.	PASS	END=85742022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	85742023	.	C	A	1413.46	PASS	BaseQRankSum=1.397;DP=122;Dels=0.00;FS=4.487;HRun=0;HaplotypeScore=33.1949;MQ=60;MQ0=0;MQRankSum=-0.697;QD=11.59;ReadPosRankSum=1.481;SB=-278.43	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:64,56:122:99:1443,0,1688:60:99:0.467
chr1	85742024	.	G	.	.	PASS	END=85742057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	85787133	.	G	.	.	PASS	END=85787253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	85790421	.	A	.	.	PASS	END=85790452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	85790453	.	T	.	.	PASS	END=85790534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	85790535	.	T	.	.	PASS	END=85790562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	85790563	.	T	.	.	PASS	END=85790568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	85816096	.	A	.	.	PASS	END=85816141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	85816142	.	G	.	.	PASS	END=85816216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	85816217	.	C	.	.	PASS	END=85816219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	85817176	.	A	.	.	PASS	END=85817242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	85817243	.	G	.	.	PASS	END=85817274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	85817275	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:83:99:60
chr1	85824429	.	A	.	.	PASS	END=85824486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	85824487	.	A	.	.	PASS	END=85824506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	85824507	.	T	.	.	PASS	END=85824532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	85870015	.	C	.	.	LowGQX	END=85870114	GT	./.
chr1	85930141	.	T	.	.	LowGQX	END=85930144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	85930145	.	A	.	5.79	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr1	85930146	.	A	.	.	LowGQX	END=85930156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	85930157	.	A	.	5.68	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr1	85930158	.	C	.	.	LowGQX	END=85930160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	85930161	.	A	.	5.68	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr1	85930162	.	A	.	.	LowGQX	.	GT	./.
chr1	85930163	.	T	.	.	LowGQX	END=85930172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	85930173	.	A	.	.	LowGQX	.	GT	./.
chr1	85930174	.	C	.	.	LowGQX	END=85930176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	85930177	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:3.01:60:3
chr1	85930178	.	C	.	.	LowGQX	END=85930180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	85930181	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	85930182	.	C	.	.	LowGQX	END=85930184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	85930185	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	85930186	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	85930187	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr1	85930188	.	A	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:4:3.01:60:3
chr1	85930189	.	C	.	.	LowGQX	END=85930191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	85930192	.	T	.	42.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.03:60:12
chr1	85930193	.	A	.	39.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.02:60:9
chr1	85930194	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:60
chr1	85930195	.	A	.	39.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.02:60:9
chr1	85930196	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	85930197	.	C	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	85930198	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	85930199	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	85930200	.	C	.	.	LowGQX	END=85930201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	85930202	.	T	.	.	LowGQX	END=85930204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	85930205	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	85930206	.	A	.	.	LowGQX	END=85930208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	85930209	.	G	.	.	LowGQX	END=85930210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	85930211	.	A	.	.	LowGQX	END=85930213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	85930214	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	85930215	.	T	.	.	LowGQX	END=85930217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	85930218	.	A	.	.	LowGQX	END=85930225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	85930226	.	G	.	.	LowGQX	END=85930231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	85930232	.	A	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	85930233	.	G	.	.	LowGQX	END=85930236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	85930237	.	G	.	.	LowGQX	END=85930240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	85930424	.	A	.	.	PASS	END=85930467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	85930468	.	C	.	.	PASS	END=85930609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	85930610	.	A	.	.	PASS	END=85930627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	85930628	.	T	.	.	PASS	END=85930643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	85930644	.	C	.	.	PASS	END=85930668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	85930669	.	C	.	.	PASS	END=85930684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	85930685	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:72:60
chr1	85930686	.	G	.	.	PASS	END=85930688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:96:60
chr1	85930689	.	T	.	.	PASS	END=85930694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	85930695	.	G	.	.	PASS	END=85930705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:57:60
chr1	85930706	.	G	.	.	PASS	END=85930711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	85930712	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:27:60
chr1	85930713	.	G	.	.	PASS	END=85930726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	85930727	.	A	.	.	PASS	END=85930730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	86046650	.	C	.	.	LowGQX	END=86046749	GT	./.
chr1	86047046	.	A	.	.	LowGQX	END=86047066	GT	./.
chr1	86047067	.	C	.	.	LowGQX	END=86047189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	86047190	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	86047191	.	C	.	.	LowGQX	END=86047215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	86047216	.	T	.	.	LowGQX	END=86047263	GT	./.
chr1	86047535	.	A	.	.	LowGQX	END=86048071	GT	./.
chr1	86048097	.	A	.	.	LowGQX	END=86048309	GT	./.
chr1	86048421	.	A	.	.	LowGQX	END=86048727	GT	./.
chr1	86119712	.	T	.	.	PASS	END=86119782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:307:99:60
chr1	86119783	.	T	.	.	PASS	END=86119811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:349:99:60
chr1	86123478	.	T	.	.	PASS	END=86123502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	86123503	.	G	.	.	PASS	END=86123636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	86123637	.	G	.	.	PASS	END=86123656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	86142908	.	A	.	.	PASS	END=86142910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	86142911	.	A	.	.	PASS	END=86143007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	86144322	.	C	.	.	PASS	END=86144465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	86144466	.	T	.	.	PASS	END=86144473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	86144474	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:98:99:60
chr1	86146504	.	A	.	.	PASS	END=86146577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	86146578	.	C	.	.	PASS	END=86146603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	86167838	.	A	.	.	PASS	END=86167912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	86167913	.	G	.	.	PASS	END=86167945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	86171754	.	A	.	.	PASS	END=86171853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr1	86171930	.	A	.	.	PASS	END=86172040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	86172053	.	G	.	.	PASS	END=86172125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	86172126	.	T	.	.	PASS	END=86172162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	86172163	.	T	.	.	PASS	END=86172190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	86172191	.	C	.	.	PASS	END=86172207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	86173310	.	A	.	.	PASS	END=86173372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	86173373	.	C	.	.	PASS	END=86173513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	86173514	.	C	.	.	PASS	END=86173644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	86173645	.	T	.	.	PASS	END=86173771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	86173772	.	G	.	.	PASS	END=86173819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	86173820	.	C	.	.	PASS	END=86173917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	86173918	.	C	.	.	PASS	END=86173969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	86196227	.	C	.	.	LowGQX	END=86196377	GT	./.
chr1	86200430	.	A	.	.	LowGQX	END=86200649	GT	./.
chr1	86201940	.	T	.	.	LowGQX	END=86202110	GT	./.
chr1	86202111	.	A	.	.	LowGQX	END=86202230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86202231	.	A	.	.	LowGQX	.	GT	./.
chr1	86202232	.	A	.	.	LowGQX	END=86202240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86202241	.	G	.	.	LowGQX	.	GT	./.
chr1	86202242	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86203077	.	A	.	.	LowGQX	END=86203190	GT	./.
chr1	86210347	.	A	.	.	LowGQX	END=86210519	GT	./.
chr1	86211107	.	A	.	.	LowGQX	END=86211206	GT	./.
chr1	86227043	.	G	.	.	LowGQX	END=86227142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86227182	.	T	.	.	LowGQX	END=86227200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86227201	.	A	.	.	LowGQX	END=86227248	GT	./.
chr1	86227249	.	C	.	.	LowGQX	END=86227281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86241325	.	G	.	.	LowGQX	END=86241424	GT	./.
chr1	86246880	.	G	.	.	LowGQX	END=86246979	GT	./.
chr1	86249161	.	G	.	.	LowGQX	END=86249164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86249165	.	G	.	.	LowGQX	.	GT	./.
chr1	86249166	.	A	.	.	LowGQX	END=86249198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86249199	.	T	.	.	LowGQX	.	GT	./.
chr1	86249200	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86249201	.	G	.	.	LowGQX	.	GT	./.
chr1	86249202	.	G	.	.	LowGQX	END=86249203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86249204	.	C	.	.	LowGQX	.	GT	./.
chr1	86249205	.	C	.	.	LowGQX	END=86249214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86249215	.	A	.	.	LowGQX	.	GT	./.
chr1	86249216	.	A	.	.	LowGQX	END=86249220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86249221	.	G	.	.	LowGQX	.	GT	./.
chr1	86249222	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86249223	.	C	.	.	LowGQX	.	GT	./.
chr1	86249224	.	A	.	.	LowGQX	END=86249225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86249226	.	C	.	.	LowGQX	.	GT	./.
chr1	86249227	.	A	.	.	LowGQX	END=86249228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86249229	.	C	.	.	LowGQX	.	GT	./.
chr1	86249230	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86249231	.	C	.	.	LowGQX	.	GT	./.
chr1	86249232	.	C	.	.	LowGQX	END=86249239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86249240	.	C	.	.	LowGQX	.	GT	./.
chr1	86249241	.	C	.	.	LowGQX	END=86249242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86249243	.	T	.	.	LowGQX	.	GT	./.
chr1	86249244	.	A	.	.	LowGQX	END=86249253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86249254	.	T	.	.	LowGQX	.	GT	./.
chr1	86249255	.	A	.	.	LowGQX	END=86249260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86249773	.	T	.	.	LowGQX	END=86249872	GT	./.
chr1	86249940	.	A	.	.	LowGQX	END=86250051	GT	./.
chr1	86252035	.	A	.	.	LowGQX	END=86252146	GT	./.
chr1	86282469	.	A	.	.	LowGQX	END=86282491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86282492	.	T	.	.	LowGQX	END=86282580	GT	./.
chr1	86283694	.	G	.	.	LowGQX	END=86283793	GT	./.
chr1	86289196	.	T	.	.	LowGQX	END=86289295	GT	./.
chr1	86289345	.	G	.	.	LowGQX	END=86289444	GT	./.
chr1	86304245	.	T	.	.	LowGQX	END=86304344	GT	./.
chr1	86306833	.	T	.	.	LowGQX	END=86306983	GT	./.
chr1	86307728	.	A	.	.	LowGQX	END=86307827	GT	./.
chr1	86308000	.	T	.	.	LowGQX	END=86308150	GT	./.
chr1	86313346	.	A	.	.	LowGQX	END=86313457	GT	./.
chr1	86315013	.	C	.	.	LowGQX	END=86315112	GT	./.
chr1	86334200	.	A	.	.	LowGQX	END=86334311	GT	./.
chr1	86334442	.	A	.	.	LowGQX	END=86334464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86334465	.	C	.	.	LowGQX	.	GT	./.
chr1	86334466	.	T	.	.	LowGQX	END=86334502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86334503	.	G	.	.	LowGQX	.	GT	./.
chr1	86334504	.	A	.	.	LowGQX	END=86334508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86334509	.	C	.	.	LowGQX	.	GT	./.
chr1	86334510	.	T	.	.	LowGQX	END=86334514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86334515	.	C	.	.	LowGQX	END=86334532	GT	./.
chr1	86334533	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86334534	.	A	.	.	LowGQX	.	GT	./.
chr1	86334535	.	A	.	.	LowGQX	END=86334541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86340309	.	A	.	.	LowGQX	END=86340408	GT	./.
chr1	86340937	.	T	.	.	LowGQX	END=86340986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86340987	.	A	.	.	LowGQX	END=86341036	GT	./.
chr1	86342722	.	T	.	.	LowGQX	END=86342723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86342724	.	T	.	.	LowGQX	.	GT	./.
chr1	86342725	.	A	.	.	LowGQX	END=86342727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86342728	.	T	.	.	LowGQX	.	GT	./.
chr1	86342729	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86342730	.	T	.	.	LowGQX	.	GT	./.
chr1	86342731	.	A	.	.	LowGQX	END=86342747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86342748	.	T	.	.	LowGQX	.	GT	./.
chr1	86342749	.	A	.	.	LowGQX	END=86342762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86342763	.	A	.	.	LowGQX	.	GT	./.
chr1	86342764	.	G	.	.	LowGQX	END=86342782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86342783	.	G	.	.	LowGQX	.	GT	./.
chr1	86342784	.	A	.	.	LowGQX	END=86342785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86342786	.	C	.	.	LowGQX	.	GT	./.
chr1	86342787	.	T	.	.	LowGQX	END=86342810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86342811	.	G	.	.	LowGQX	.	GT	./.
chr1	86342812	.	C	.	.	LowGQX	END=86342858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86342859	.	C	.	.	LowGQX	END=86342881	GT	./.
chr1	86355220	.	G	.	.	LowGQX	END=86355370	GT	./.
chr1	86361459	.	C	.	.	LowGQX	END=86361584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86361585	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	86361586	.	C	.	.	LowGQX	END=86361613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	86361677	.	T	.	.	LowGQX	END=86361776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86362016	.	A	.	.	LowGQX	END=86362115	GT	./.
chr1	86372854	.	A	.	.	LowGQX	END=86372953	GT	./.
chr1	86374199	.	C	.	.	LowGQX	END=86374357	GT	./.
chr1	86375541	.	G	.	.	LowGQX	END=86375573	GT	./.
chr1	86375574	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86375575	.	A	.	.	LowGQX	.	GT	./.
chr1	86375576	.	C	.	.	LowGQX	END=86375577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86375578	.	A	.	.	LowGQX	.	GT	./.
chr1	86375579	.	C	.	.	LowGQX	END=86375590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86375591	.	G	.	.	LowGQX	.	GT	./.
chr1	86375592	.	C	.	.	LowGQX	END=86375595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86375596	.	C	.	.	LowGQX	.	GT	./.
chr1	86375597	.	T	.	.	LowGQX	END=86375599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86375600	.	G	.	.	LowGQX	.	GT	./.
chr1	86375601	.	G	.	.	LowGQX	END=86375604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86375605	.	C	.	.	LowGQX	END=86375606	GT	./.
chr1	86375607	.	T	.	.	LowGQX	END=86375611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86375612	.	T	.	.	LowGQX	.	GT	./.
chr1	86375613	.	T	.	.	LowGQX	END=86375614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86375615	.	A	.	.	LowGQX	.	GT	./.
chr1	86375616	.	A	.	.	LowGQX	END=86375618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86375619	.	C	.	.	LowGQX	.	GT	./.
chr1	86375620	.	A	.	.	LowGQX	END=86375627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86375628	.	C	.	.	LowGQX	.	GT	./.
chr1	86375629	.	T	.	.	LowGQX	END=86375632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86375633	.	C	.	.	LowGQX	.	GT	./.
chr1	86375634	.	A	.	.	LowGQX	END=86375636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86375637	.	A	.	.	LowGQX	.	GT	./.
chr1	86375638	.	C	.	.	LowGQX	END=86375640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86375641	.	C	.	.	LowGQX	.	GT	./.
chr1	86375642	.	T	.	.	LowGQX	END=86375653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86375654	.	C	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	86375655	.	G	.	.	LowGQX	END=86375657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86375658	.	C	.	.	LowGQX	END=86375659	GT	./.
chr1	86375660	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86375661	.	A	.	.	LowGQX	.	GT	./.
chr1	86375662	.	G	.	.	LowGQX	END=86375664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86375665	.	G	.	.	LowGQX	.	GT	./.
chr1	86375666	.	G	.	.	LowGQX	END=86375679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86375680	.	G	.	.	LowGQX	.	GT	./.
chr1	86375681	.	T	.	.	LowGQX	END=86375687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86375688	.	T	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	86375689	.	T	.	.	LowGQX	END=86375709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86377040	.	C	.	.	LowGQX	END=86377047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86377048	.	T	.	.	LowGQX	.	GT	./.
chr1	86377049	.	T	.	.	LowGQX	END=86377073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86377074	.	T	.	.	LowGQX	.	GT	./.
chr1	86377075	.	G	.	.	LowGQX	END=86377094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86377095	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	86377096	.	T	.	.	LowGQX	END=86377099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86377100	.	G	.	.	LowGQX	.	GT	./.
chr1	86377101	.	G	.	.	LowGQX	END=86377110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86377111	.	A	.	.	LowGQX	.	GT	./.
chr1	86377112	.	G	.	.	LowGQX	END=86377113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86377114	.	T	.	.	LowGQX	END=86377190	GT	./.
chr1	86426456	.	T	.	.	LowGQX	END=86426529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86426530	.	G	.	.	LowGQX	.	GT	./.
chr1	86426531	.	T	.	.	LowGQX	END=86426566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86426567	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	86426568	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	86426569	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	86426570	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	86426571	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	86426572	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	86426573	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	86426574	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	86426575	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	86426576	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	86426577	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	86426578	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	86426579	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	86426580	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	86426581	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	86426582	.	A	.	.	LowGQX	.	GT	./.
chr1	86426583	.	A	.	.	LowGQX	END=86426614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86426850	.	T	.	.	LowGQX	END=86427004	GT	./.
chr1	86430669	.	G	.	.	LowGQX	END=86430743	GT	./.
chr1	86430744	.	C	.	.	LowGQX	END=86430768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86435883	.	A	.	.	LowGQX	END=86435982	GT	./.
chr1	86436941	.	A	.	.	LowGQX	END=86436947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86436948	.	G	.	.	LowGQX	.	GT	./.
chr1	86436949	.	C	.	.	LowGQX	END=86436967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86436968	.	G	.	.	LowGQX	.	GT	./.
chr1	86436969	.	A	.	.	LowGQX	END=86437012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86437013	.	T	.	.	LowGQX	.	GT	./.
chr1	86437014	.	C	.	.	LowGQX	END=86437053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86437054	.	G	.	.	LowGQX	END=86437099	GT	./.
chr1	86453202	.	T	.	.	LowGQX	END=86453360	GT	./.
chr1	86482751	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86482752	.	C	.	.	LowGQX	.	GT	./.
chr1	86482753	.	T	.	.	LowGQX	END=86482758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86482759	.	G	.	.	LowGQX	.	GT	./.
chr1	86482760	.	A	.	.	LowGQX	END=86482766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86482767	.	T	.	.	LowGQX	.	GT	./.
chr1	86482768	.	T	.	.	LowGQX	END=86482776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86482777	.	C	.	.	LowGQX	.	GT	./.
chr1	86482778	.	A	.	.	LowGQX	END=86482816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86482817	.	T	.	.	LowGQX	.	GT	./.
chr1	86482818	.	T	.	.	LowGQX	END=86482854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86482855	.	T	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	86482856	.	G	.	.	LowGQX	END=86482873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86482874	.	T	.	.	LowGQX	.	GT	./.
chr1	86482875	.	C	.	.	LowGQX	END=86482888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86482889	.	T	.	.	LowGQX	END=86482961	GT	./.
chr1	86487900	.	G	.	.	LowGQX	END=86487999	GT	./.
chr1	86488198	.	A	.	.	LowGQX	END=86488297	GT	./.
chr1	86488489	.	T	.	.	LowGQX	END=86488588	GT	./.
chr1	86488614	.	C	.	.	LowGQX	END=86488713	GT	./.
chr1	86497534	.	A	.	.	LowGQX	END=86497633	GT	./.
chr1	86499471	.	A	.	.	LowGQX	END=86499629	GT	./.
chr1	86511498	.	A	.	.	LowGQX	END=86511597	GT	./.
chr1	86512426	.	A	.	.	LowGQX	END=86512468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86512469	.	T	.	.	LowGQX	END=86512580	GT	./.
chr1	86515784	.	C	.	.	LowGQX	END=86515785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86515786	.	A	.	.	LowGQX	.	GT	./.
chr1	86515787	.	T	.	.	LowGQX	END=86515829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86515830	.	G	.	.	LowGQX	.	GT	./.
chr1	86515831	.	T	.	.	LowGQX	END=86515837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86515838	.	T	.	.	LowGQX	.	GT	./.
chr1	86515839	.	C	.	.	LowGQX	END=86515852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86515853	.	A	.	.	LowGQX	.	GT	./.
chr1	86515854	.	T	.	.	LowGQX	END=86515862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86515863	.	T	.	.	LowGQX	.	GT	./.
chr1	86515864	.	A	.	.	LowGQX	END=86515883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86523587	.	A	.	.	LowGQX	END=86523686	GT	./.
chr1	86524781	.	A	.	.	LowGQX	END=86524880	GT	./.
chr1	86529371	.	T	.	.	LowGQX	END=86529470	GT	./.
chr1	86554834	.	A	.	.	LowGQX	END=86554984	GT	./.
chr1	86557927	.	T	.	.	LowGQX	END=86558077	GT	./.
chr1	86578227	.	T	.	.	LowGQX	END=86578326	GT	./.
chr1	86580985	.	G	.	.	LowGQX	END=86581084	GT	./.
chr1	86590526	.	A	.	.	LowGQX	END=86591243	GT	./.
chr1	86591244	.	G	.	.	LowGQX	END=86591417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86591418	.	T	.	.	LowGQX	END=86591899	GT	./.
chr1	86611785	.	A	.	.	LowGQX	END=86611884	GT	./.
chr1	86622002	.	A	.	.	LowGQX	END=86622101	GT	./.
chr1	86795869	.	C	.	.	LowGQX	END=86795900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86795901	.	T	.	.	LowGQX	END=86795968	GT	./.
chr1	86814431	.	A	.	.	LowGQX	END=86814539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86814540	.	A	.	.	LowGQX	END=86814620	GT	./.
chr1	86817833	.	T	.	.	LowGQX	END=86817932	GT	./.
chr1	86818540	.	A	.	.	LowGQX	END=86818709	GT	./.
chr1	86820211	.	A	.	.	LowGQX	END=86820377	GT	./.
chr1	86820395	.	A	.	.	LowGQX	END=86820549	GT	./.
chr1	86821000	.	T	.	.	LowGQX	END=86821099	GT	./.
chr1	86821634	.	G	.	.	LowGQX	END=86821733	GT	./.
chr1	86822125	.	A	.	.	LowGQX	END=86822287	GT	./.
chr1	86824413	.	A	.	.	LowGQX	END=86824627	GT	./.
chr1	86826107	.	A	.	.	LowGQX	END=86826142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86826143	.	T	.	.	LowGQX	.	GT	./.
chr1	86826144	.	T	.	.	LowGQX	END=86826171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86826172	.	T	.	.	LowGQX	.	GT	./.
chr1	86826173	.	T	.	.	LowGQX	END=86826199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86826200	.	T	.	.	LowGQX	.	GT	./.
chr1	86826201	.	T	.	.	LowGQX	END=86826221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86834312	.	A	.	.	LowGQX	END=86834411	GT	./.
chr1	86836699	.	A	.	.	LowGQX	END=86836838	GT	./.
chr1	86838112	.	A	.	.	LowGQX	END=86838271	GT	./.
chr1	86841914	.	A	.	.	LowGQX	END=86842103	GT	./.
chr1	86847923	.	A	.	.	LowGQX	END=86848092	GT	./.
chr1	86848542	.	G	.	.	LowGQX	END=86848699	GT	./.
chr1	86848745	.	T	.	.	LowGQX	END=86848898	GT	./.
chr1	86850357	.	A	.	.	LowGQX	END=86850536	GT	./.
chr1	86851139	.	A	.	.	LowGQX	END=86851143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851144	.	T	.	.	LowGQX	END=86851145	GT	./.
chr1	86851146	.	C	.	.	LowGQX	END=86851150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851151	.	T	.	.	LowGQX	.	GT	./.
chr1	86851152	.	T	.	.	LowGQX	END=86851164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851165	.	G	.	.	LowGQX	.	GT	./.
chr1	86851166	.	G	.	.	LowGQX	END=86851167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851168	.	G	.	.	LowGQX	.	GT	./.
chr1	86851169	.	T	.	.	LowGQX	END=86851180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851181	.	G	.	.	LowGQX	.	GT	./.
chr1	86851182	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851183	.	C	.	.	LowGQX	.	GT	./.
chr1	86851184	.	A	.	.	LowGQX	END=86851187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851188	.	G	.	.	LowGQX	.	GT	./.
chr1	86851189	.	C	.	.	LowGQX	END=86851193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851194	.	C	.	.	LowGQX	END=86851195	GT	./.
chr1	86851196	.	A	.	.	LowGQX	END=86851198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851199	.	G	.	.	LowGQX	.	GT	./.
chr1	86851200	.	A	.	.	LowGQX	END=86851202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851203	.	G	.	.	LowGQX	.	GT	./.
chr1	86851204	.	A	.	.	LowGQX	END=86851208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851209	.	C	.	.	LowGQX	END=86851219	GT	./.
chr1	86851220	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851221	.	C	.	.	LowGQX	.	GT	./.
chr1	86851222	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851223	.	T	.	.	LowGQX	.	GT	./.
chr1	86851224	.	T	.	.	LowGQX	END=86851226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851227	.	G	.	.	LowGQX	.	GT	./.
chr1	86851228	.	T	.	.	LowGQX	END=86851235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851236	.	C	.	.	LowGQX	.	GT	./.
chr1	86851237	.	C	.	.	LowGQX	END=86851243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851244	.	G	.	.	LowGQX	.	GT	./.
chr1	86851245	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851246	.	C	.	.	LowGQX	.	GT	./.
chr1	86851247	.	T	.	.	LowGQX	END=86851248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851249	.	T	.	.	LowGQX	.	GT	./.
chr1	86851250	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851251	.	C	.	.	LowGQX	END=86851252	GT	./.
chr1	86851253	.	T	.	.	LowGQX	END=86851254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851255	.	T	.	.	LowGQX	.	GT	./.
chr1	86851256	.	A	.	.	LowGQX	END=86851257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851258	.	A	.	.	LowGQX	.	GT	./.
chr1	86851259	.	A	.	.	LowGQX	END=86851269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851270	.	C	.	.	LowGQX	.	GT	./.
chr1	86851271	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851272	.	G	.	.	LowGQX	.	GT	./.
chr1	86851273	.	G	.	.	LowGQX	END=86851279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851280	.	A	.	.	LowGQX	.	GT	./.
chr1	86851281	.	C	.	.	LowGQX	END=86851292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851293	.	C	.	.	LowGQX	END=86851294	GT	./.
chr1	86851295	.	A	.	.	LowGQX	END=86851305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851306	.	A	.	.	LowGQX	.	GT	./.
chr1	86851307	.	A	.	.	LowGQX	END=86851310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86851311	.	C	.	.	LowGQX	END=86851312	GT	./.
chr1	86851313	.	T	.	.	LowGQX	END=86851318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	86852527	.	T	.	.	LowGQX	END=86852726	GT	./.
chr1	86889929	.	A	.	.	PASS	END=86889962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	86889963	.	C	.	.	PASS	END=86890068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	86890069	.	A	.	.	PASS	END=86890118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:60
chr1	86890980	.	T	.	.	PASS	END=86891004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	86891005	.	C	A	4419.16	PASS	DP=127;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8935;MQ=60;MQ0=0;QD=34.80;SB=-2181.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,127:127:99:4419,340,0:60:99:1.000
chr1	86891006	.	T	.	.	PASS	END=86891103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	86891104	.	C	.	.	PASS	END=86891161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	86894099	.	A	.	.	PASS	END=86894237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr1	86894238	.	C	.	.	PASS	END=86894253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:304:99:60
chr1	86896473	.	C	.	.	PASS	END=86896540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	86896541	.	G	A	1934.54	PASS	BaseQRankSum=2.252;DP=176;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=1.636;QD=10.99;ReadPosRankSum=0.689;SB=-941.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:92,83:176:99:1965,0,2414:60:99:0.474
chr1	86896542	.	C	.	.	PASS	END=86896605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	86896606	.	T	.	.	PASS	END=86896633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	86896634	.	A	.	.	PASS	END=86896655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	86898020	.	A	.	.	PASS	END=86898078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	86898079	.	T	.	.	PASS	END=86898213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	86900199	.	A	.	.	PASS	END=86900254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	86900255	.	A	.	.	PASS	END=86900331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	86900332	.	T	C	1322.18	PASS	BaseQRankSum=1.491;DP=116;Dels=0.00;FS=2.566;HRun=0;HaplotypeScore=11.5189;MQ=60;MQ0=0;MQRankSum=0.122;QD=11.40;ReadPosRankSum=-0.590;SB=-697.70	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:65,51:116:99:1352,0,1572:60:99:0.440
chr1	86900333	.	G	.	.	PASS	END=86900371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	86900372	.	C	G	1155.19	PASS	BaseQRankSum=2.224;DP=113;Dels=0.00;FS=1.549;HRun=0;HaplotypeScore=5.7338;MQ=60;MQ0=0;MQRankSum=-1.820;QD=10.22;ReadPosRankSum=1.283;SB=-665.24	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:67,46:113:99:1185,0,1762:60:99:0.407
chr1	86900373	.	A	.	.	PASS	END=86900413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	86900414	.	A	.	.	PASS	END=86900430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	86904557	.	A	.	.	PASS	END=86904585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	86904586	.	G	.	.	PASS	END=86904653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	86904654	.	C	.	.	PASS	END=86904791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	86905829	.	A	.	.	PASS	END=86905931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	86905932	.	C	.	.	PASS	END=86905984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	86905985	.	T	.	.	PASS	END=86906010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	86907118	.	A	.	.	PASS	END=86907155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	86907156	.	C	.	.	PASS	END=86907203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	86907204	.	A	.	.	PASS	END=86907228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	86909468	.	A	.	.	PASS	END=86909679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	86909680	.	C	.	.	PASS	END=86909696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	86913189	.	A	.	.	PASS	END=86913201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	86913202	.	G	.	.	PASS	END=86913213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	86913214	.	G	.	.	PASS	END=86913264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	86913265	.	C	T	1501.14	PASS	BaseQRankSum=3.403;DP=113;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.6815;MQ=60;MQ0=0;MQRankSum=1.445;QD=13.28;ReadPosRankSum=-0.892;SB=-320.40	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:59,53:113:99:1531,0,1483:60:99:0.473
chr1	86913266	.	G	.	.	PASS	END=86913302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	86913303	.	C	.	.	PASS	END=86913437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	86913438	.	T	.	.	PASS	END=86913463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	86916244	.	A	.	.	PASS	END=86916257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	86916258	.	T	.	.	PASS	END=86916375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	86916376	.	A	.	.	PASS	END=86916395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	86916396	.	T	.	.	PASS	END=86916408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	86916409	.	A	.	.	PASS	END=86916418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	86919050	.	A	.	.	PASS	END=86919253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	86919254	.	A	.	.	PASS	END=86919287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	86920766	.	A	.	.	PASS	END=86920797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	86920798	.	G	.	.	PASS	END=86920852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	86920853	.	G	.	.	PASS	END=86920869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	86920870	.	C	.	.	PASS	END=86920903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	86920904	.	A	G	1950.82	PASS	BaseQRankSum=-0.617;DP=143;Dels=0.00;FS=4.111;HRun=0;HaplotypeScore=9.4692;MQ=60;MQ0=0;MQRankSum=1.298;QD=13.64;ReadPosRankSum=1.740;SB=-1117.78	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:64,78:143:99:1981,0,1570:60:99:0.549
chr1	86920905	.	A	.	.	PASS	END=86920988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	86920989	.	A	.	.	PASS	END=86921013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	86921014	.	C	.	.	PASS	END=86921020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	86921021	.	T	.	.	PASS	END=86921111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	86921112	.	T	.	.	PASS	END=86921212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	86934653	.	C	.	.	PASS	END=86934697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	86934698	.	T	.	.	PASS	END=86934796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	86934797	.	C	.	.	PASS	END=86934818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	86939098	.	A	.	.	PASS	END=86939129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	86939130	.	C	T	3927.52	PASS	DP=116;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=5.6815;MQ=60;MQ0=0;QD=33.86;SB=-1506.40	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,115:116:99:3928,304,0:60:99:1.000
chr1	86939131	.	T	.	.	PASS	END=86939218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	86939219	.	A	.	.	PASS	END=86939242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	86939410	.	A	.	.	PASS	END=86939455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	86939456	.	A	.	.	PASS	END=86939561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	86942079	.	G	.	.	PASS	END=86942088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	86942089	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:39:60
chr1	86942090	.	C	.	.	PASS	END=86942129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	86942130	.	G	.	.	PASS	END=86942156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	86942157	.	C	.	.	PASS	END=86942183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	86942184	.	T	.	.	PASS	END=86942204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	86942205	.	T	.	.	PASS	END=86942238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	86947886	.	A	.	.	PASS	END=86947900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	86947901	.	A	.	.	PASS	END=86947929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	86947930	.	T	.	.	PASS	END=86947974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	86947975	.	A	T	2096.64	PASS	BaseQRankSum=2.406;DP=188;Dels=0.00;FS=3.508;HRun=1;HaplotypeScore=18.0437;MQ=60;MQ0=0;MQRankSum=-0.070;QD=11.15;ReadPosRankSum=-0.532;SB=-1143.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:101,87:188:99:2127,0,2582:60:99:0.463
chr1	86947976	.	A	.	.	PASS	END=86948053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	86948054	.	C	.	.	PASS	END=86948067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	86951024	.	A	.	.	PASS	END=86951237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	86951238	.	C	.	.	PASS	END=86951246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	86952207	.	A	.	.	PASS	END=86952323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	86952324	.	A	G	4477.81	PASS	DP=143;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.7599;MQ=60;MQ0=0;QD=31.31;SB=-2369.75	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,143:143:99:4478,346,0:60:99:1.000
chr1	86952325	.	T	.	.	PASS	END=86952435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	86952436	.	T	.	.	PASS	END=86952438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	86954677	.	A	.	.	PASS	END=86954739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	86954740	.	A	.	.	PASS	END=86954828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	86954829	.	C	.	.	PASS	END=86954855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	86956946	.	A	.	.	PASS	END=86957034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	86957035	.	T	.	.	PASS	END=86957056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	86959065	.	A	.	.	PASS	END=86959081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	86959082	.	T	.	.	PASS	END=86959172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	86959173	.	T	C	4265.87	PASS	BaseQRankSum=1.126;DP=162;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.4153;MQ=60;MQ0=0;MQRankSum=1.451;QD=26.33;ReadPosRankSum=1.451;SB=-2744.66	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,159:162:99:4266,286,0:60:99:0.994
chr1	86959174	.	G	.	.	PASS	END=86959232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	86959233	.	T	.	.	PASS	END=86959283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	86959284	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:87:99:60
chr1	86959868	.	A	.	.	PASS	END=86959946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	86959947	.	T	.	.	PASS	END=86960041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	86960042	.	C	.	.	PASS	END=86960070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	86960071	.	G	.	.	PASS	END=86960133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	86961186	.	A	.	.	PASS	END=86961190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	86961191	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:55:60
chr1	86961192	.	T	.	.	PASS	END=86961249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	86961250	.	G	.	.	PASS	END=86961331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:97:60
chr1	86961332	.	T	.	.	PASS	END=86961343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	86961344	.	G	.	.	PASS	END=86961360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	86964253	.	A	.	.	PASS	END=86964295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	86964296	.	G	.	.	PASS	END=86964450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	86964451	.	T	.	.	PASS	END=86964472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	86964473	.	G	.	.	PASS	END=86964496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	86965335	.	A	.	.	PASS	END=86965340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	86965341	.	C	.	.	PASS	END=86965389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	86965390	.	T	.	.	PASS	END=86965459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	86965460	.	T	.	.	PASS	END=86965648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	86965649	.	T	.	.	PASS	END=86965730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	87012771	.	A	.	.	LowGQX	END=87012963	GT	./.
chr1	87025573	.	T	.	.	LowGQX	END=87025757	GT	./.
chr1	87025892	.	A	.	.	LowGQX	END=87026043	GT	./.
chr1	87029342	.	A	.	.	LowGQX	END=87029454	GT	./.
chr1	87030955	.	A	.	.	LowGQX	END=87031136	GT	./.
chr1	87031483	.	A	.	.	LowGQX	END=87031705	GT	./.
chr1	87033105	.	A	.	.	LowGQX	END=87033336	GT	./.
chr1	87036758	.	A	.	.	LowGQX	END=87036939	GT	./.
chr1	87038295	.	A	.	.	PASS	END=87038344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	87038345	.	T	.	.	PASS	END=87038350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	87038351	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:44:60
chr1	87038352	.	T	.	.	PASS	END=87038369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	87038370	.	A	.	.	PASS	END=87038377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	87038378	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:24:60
chr1	87038379	.	T	.	.	PASS	END=87038387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	87038388	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:3:60
chr1	87038389	.	C	.	.	PASS	END=87038394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	87038395	.	T	.	.	PASS	END=87038396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	87038397	.	C	.	.	LowGQX	END=87038399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	87038400	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	87038401	.	C	.	.	LowGQX	END=87038406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	87038407	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	87038408	.	G	.	.	LowGQX	END=87038418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	87038419	.	C	.	.	LowGQX	END=87038422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	87038423	.	G	.	.	LowGQX	END=87038424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	87038425	.	G	.	.	LowGQX	END=87038427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	87038428	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	87038429	.	T	.	.	LowGQX	END=87038437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	87038438	.	C	.	.	LowGQX	END=87038450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	87038451	.	A	.	.	LowGQX	END=87038461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	87038462	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	87038463	.	G	.	.	LowGQX	END=87038464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	87038465	.	T	.	.	LowGQX	END=87038476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	87038477	.	T	.	.	LowGQX	END=87038511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	87040221	.	A	.	.	LowGQX	END=87040440	GT	./.
chr1	87041013	.	A	.	.	LowGQX	END=87041284	GT	./.
chr1	87043583	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	87043584	.	G	.	.	LowGQX	.	GT	./.
chr1	87043585	.	G	.	.	LowGQX	END=87043608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	87043609	.	G	.	.	LowGQX	.	GT	./.
chr1	87043610	.	A	.	.	LowGQX	END=87043621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	87043622	.	G	.	.	LowGQX	.	GT	./.
chr1	87043623	.	T	.	.	LowGQX	END=87043647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	87043648	.	G	.	.	LowGQX	.	GT	./.
chr1	87043649	.	C	.	.	LowGQX	END=87043663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87043664	.	A	.	.	LowGQX	.	GT	./.
chr1	87043665	.	G	.	.	LowGQX	END=87043718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87043719	.	A	.	.	LowGQX	END=87043733	GT	./.
chr1	87043734	.	A	.	.	LowGQX	END=87043737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87043738	.	C	.	.	LowGQX	.	GT	./.
chr1	87043739	.	A	.	.	LowGQX	END=87043757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87045035	.	A	.	.	LowGQX	END=87045272	GT	./.
chr1	87045623	.	A	.	.	LowGQX	END=87046030	GT	./.
chr1	87099975	.	A	.	.	LowGQX	.	GT	./.
chr1	87099976	.	A	.	.	LowGQX	END=87099979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87099980	.	G	.	.	LowGQX	.	GT	./.
chr1	87099981	.	T	.	.	LowGQX	END=87099985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87099986	.	A	.	.	LowGQX	END=87099988	GT	./.
chr1	87099989	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87099990	.	T	.	.	LowGQX	.	GT	./.
chr1	87099991	.	G	.	.	LowGQX	END=87099995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87099996	.	T	.	.	LowGQX	.	GT	./.
chr1	87099997	.	G	.	.	LowGQX	END=87100000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87100001	.	C	.	.	LowGQX	.	GT	./.
chr1	87100002	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87100003	.	C	.	.	LowGQX	.	GT	./.
chr1	87100004	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87100005	.	T	.	.	LowGQX	.	GT	./.
chr1	87100006	.	C	.	.	LowGQX	END=87100008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87100009	.	A	.	.	LowGQX	.	GT	./.
chr1	87100010	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87100011	.	C	.	.	LowGQX	.	GT	./.
chr1	87100012	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87100013	.	T	.	.	LowGQX	.	GT	./.
chr1	87100014	.	T	.	.	LowGQX	END=87100020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87100021	.	C	.	.	LowGQX	.	GT	./.
chr1	87100022	.	T	.	.	LowGQX	END=87100035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87100036	.	A	.	.	LowGQX	.	GT	./.
chr1	87100037	.	A	.	.	LowGQX	END=87100060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87100061	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	87100062	.	A	.	.	LowGQX	END=87100067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87100068	.	A	.	.	LowGQX	END=87100137	GT	./.
chr1	87101281	.	A	.	.	LowGQX	END=87101425	GT	./.
chr1	87101637	.	A	.	.	LowGQX	END=87101806	GT	./.
chr1	87101807	.	C	.	.	LowGQX	END=87101817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87101818	.	A	.	.	LowGQX	.	GT	./.
chr1	87101819	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87101820	.	T	.	.	LowGQX	.	GT	./.
chr1	87101821	.	T	.	.	LowGQX	END=87101826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87102431	.	T	.	.	LowGQX	END=87102433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87102434	.	C	.	.	LowGQX	.	GT	./.
chr1	87102435	.	T	.	.	LowGQX	END=87102440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87102441	.	T	.	.	LowGQX	.	GT	./.
chr1	87102442	.	A	.	.	LowGQX	END=87102444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87102445	.	G	.	.	LowGQX	.	GT	./.
chr1	87102446	.	T	.	.	LowGQX	END=87102448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87102449	.	C	.	.	LowGQX	.	GT	./.
chr1	87102450	.	T	.	.	LowGQX	END=87102457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87102458	.	T	.	.	LowGQX	.	GT	./.
chr1	87102459	.	A	.	.	LowGQX	END=87102466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87102467	.	C	.	.	LowGQX	.	GT	./.
chr1	87102468	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87102469	.	G	.	.	LowGQX	.	GT	./.
chr1	87102470	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87102471	.	A	.	.	LowGQX	END=87102472	GT	./.
chr1	87102473	.	T	.	.	LowGQX	END=87102478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87102479	.	A	.	.	LowGQX	.	GT	./.
chr1	87102480	.	C	.	.	LowGQX	END=87102482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87102483	.	G	.	.	LowGQX	.	GT	./.
chr1	87102484	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87102485	.	A	.	.	LowGQX	END=87102486	GT	./.
chr1	87102487	.	A	.	.	LowGQX	END=87102515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87102516	.	G	.	.	LowGQX	END=87102517	GT	./.
chr1	87102518	.	T	.	.	LowGQX	END=87102540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87102541	.	T	.	.	LowGQX	END=87102542	GT	./.
chr1	87102543	.	T	.	.	LowGQX	END=87102553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87102554	.	T	.	.	LowGQX	END=87102555	GT	./.
chr1	87102556	.	C	.	.	LowGQX	END=87102560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87102561	.	T	.	.	LowGQX	END=87102593	GT	./.
chr1	87104539	.	A	.	.	LowGQX	END=87104720	GT	./.
chr1	87108204	.	T	.	.	LowGQX	END=87108303	GT	./.
chr1	87170509	.	G	.	.	LowGQX	END=87170558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87170559	.	G	.	.	LowGQX	.	GT	./.
chr1	87170560	.	G	.	.	LowGQX	END=87170574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87170575	.	C	.	.	LowGQX	.	GT	./.
chr1	87170576	.	G	.	.	LowGQX	END=87170586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87170587	.	A	.	.	LowGQX	END=87170627	GT	./.
chr1	87170628	.	G	.	.	LowGQX	END=87170629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87170630	.	C	.	.	LowGQX	.	GT	./.
chr1	87170631	.	A	.	.	LowGQX	END=87170634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87170635	.	T	.	.	LowGQX	.	GT	./.
chr1	87170636	.	C	.	.	LowGQX	END=87170641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87170642	.	T	.	.	LowGQX	.	GT	./.
chr1	87170643	.	C	.	.	LowGQX	END=87170647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87170648	.	C	.	.	LowGQX	.	GT	./.
chr1	87170649	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	87170650	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	87170651	.	G	.	.	LowGQX	END=87170663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	87170664	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	87170665	.	G	.	.	LowGQX	END=87170668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	87181405	.	A	.	.	LowGQX	END=87181584	GT	./.
chr1	87185188	.	A	.	.	LowGQX	END=87185249	GT	./.
chr1	87185250	.	A	.	.	LowGQX	END=87185251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87185252	.	A	.	.	LowGQX	.	GT	./.
chr1	87185253	.	A	.	.	LowGQX	END=87185264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87185265	.	T	.	.	LowGQX	.	GT	./.
chr1	87185266	.	G	.	.	LowGQX	END=87185272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87185273	.	T	.	.	LowGQX	.	GT	./.
chr1	87185274	.	A	.	.	LowGQX	END=87185318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87185319	.	G	.	.	LowGQX	.	GT	./.
chr1	87185320	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87188221	.	A	.	.	LowGQX	END=87188358	GT	./.
chr1	87189993	.	T	.	.	LowGQX	END=87190143	GT	./.
chr1	87194079	.	A	.	.	LowGQX	END=87194178	GT	./.
chr1	87195733	.	A	.	.	LowGQX	END=87195832	GT	./.
chr1	87200280	.	T	.	.	LowGQX	END=87200379	GT	./.
chr1	87200760	.	A	.	.	LowGQX	END=87200864	GT	./.
chr1	87207889	.	A	.	.	LowGQX	END=87208121	GT	./.
chr1	87208755	.	T	.	.	LowGQX	END=87208898	GT	./.
chr1	87208899	.	A	.	.	LowGQX	END=87208920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87329156	.	T	.	.	PASS	END=87329188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	87329189	.	C	.	.	PASS	END=87329216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	87329217	.	A	.	.	PASS	END=87329278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	87329279	.	C	.	.	PASS	END=87329280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	87329281	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:57:60
chr1	87329282	.	G	.	.	PASS	END=87329288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	87333711	.	G	.	.	PASS	END=87333746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:92:60
chr1	87333747	.	G	.	.	PASS	END=87333785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	87333786	.	C	.	.	PASS	END=87333810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	87346327	.	G	.	.	PASS	END=87346344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	87346345	.	C	.	.	PASS	END=87346363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	87346364	.	T	.	.	PASS	END=87346426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	87352809	.	C	.	.	LowGQX	END=87352908	GT	./.
chr1	87368933	.	C	.	.	PASS	END=87368942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	87368943	.	G	.	.	PASS	END=87368986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	87368987	.	C	.	.	PASS	END=87369095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	87369096	.	T	.	.	PASS	END=87369131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	87379703	.	A	.	.	PASS	END=87379736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	87379737	.	A	.	.	PASS	END=87379802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	87380668	.	G	.	.	LowGQX	END=87380845	GT	./.
chr1	87458738	.	G	.	.	LowGQX	END=87458837	GT	./.
chr1	87530132	.	C	.	.	LowGQX	.	GT	./.
chr1	87530133	.	C	.	.	LowGQX	END=87530134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87530135	.	T	.	.	LowGQX	.	GT	./.
chr1	87530136	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87530137	.	A	.	.	LowGQX	.	GT	./.
chr1	87530138	.	A	.	.	LowGQX	END=87530140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87530141	.	T	.	.	LowGQX	.	GT	./.
chr1	87530142	.	G	.	.	LowGQX	END=87530143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87530144	.	A	.	.	LowGQX	END=87530145	GT	./.
chr1	87530146	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87530147	.	T	.	.	LowGQX	END=87530149	GT	./.
chr1	87530150	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87530151	.	T	.	.	LowGQX	.	GT	./.
chr1	87530152	.	G	.	.	LowGQX	END=87530154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87530155	.	A	.	.	LowGQX	END=87530231	GT	./.
chr1	87538615	.	A	.	.	LowGQX	END=87538731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87538732	.	A	.	.	LowGQX	END=87538857	GT	./.
chr1	87549870	.	T	.	.	LowGQX	END=87549969	GT	./.
chr1	87558212	.	A	.	.	LowGQX	END=87558391	GT	./.
chr1	87563519	.	A	.	.	LowGQX	END=87563622	GT	./.
chr1	87569113	.	A	.	.	LowGQX	END=87569158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87569159	.	T	.	.	LowGQX	END=87569274	GT	./.
chr1	87570151	.	A	.	.	LowGQX	END=87570381	GT	./.
chr1	87597769	.	A	.	.	LowGQX	END=87597802	GT	./.
chr1	87597803	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597804	.	T	.	.	LowGQX	END=87597807	GT	./.
chr1	87597808	.	G	.	.	LowGQX	END=87597809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597810	.	G	.	.	LowGQX	END=87597812	GT	./.
chr1	87597813	.	G	.	.	LowGQX	END=87597816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597817	.	G	.	.	LowGQX	.	GT	./.
chr1	87597818	.	T	.	.	LowGQX	END=87597820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597821	.	C	.	.	LowGQX	END=87597822	GT	./.
chr1	87597823	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597824	.	T	.	.	LowGQX	.	GT	./.
chr1	87597825	.	T	.	.	LowGQX	END=87597834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597835	.	T	.	.	LowGQX	.	GT	./.
chr1	87597836	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597837	.	T	.	.	LowGQX	.	GT	./.
chr1	87597838	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597839	.	C	.	.	LowGQX	.	GT	./.
chr1	87597840	.	A	.	.	LowGQX	END=87597841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597842	.	C	.	.	LowGQX	.	GT	./.
chr1	87597843	.	A	.	.	LowGQX	END=87597845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597846	.	G	.	.	LowGQX	.	GT	./.
chr1	87597847	.	G	.	.	LowGQX	END=87597852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597853	.	G	.	.	LowGQX	.	GT	./.
chr1	87597854	.	C	.	.	LowGQX	END=87597861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597862	.	T	.	.	LowGQX	END=87597863	GT	./.
chr1	87597864	.	C	.	.	LowGQX	END=87597875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597876	.	T	.	.	LowGQX	.	GT	./.
chr1	87597877	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597878	.	C	.	.	LowGQX	.	GT	./.
chr1	87597879	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597880	.	C	.	.	LowGQX	.	GT	./.
chr1	87597881	.	C	.	.	LowGQX	END=87597883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597884	.	G	.	.	LowGQX	END=87597885	GT	./.
chr1	87597886	.	A	.	.	LowGQX	END=87597902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597903	.	G	.	.	LowGQX	.	GT	./.
chr1	87597904	.	A	.	.	LowGQX	END=87597913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597914	.	T	.	.	LowGQX	.	GT	./.
chr1	87597915	.	T	.	.	LowGQX	END=87597930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597931	.	C	.	.	LowGQX	.	GT	./.
chr1	87597932	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597933	.	A	.	.	LowGQX	.	GT	./.
chr1	87597934	.	G	.	.	LowGQX	END=87597935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597936	.	G	.	.	LowGQX	END=87597937	GT	./.
chr1	87597938	.	G	.	.	LowGQX	END=87597941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597942	.	G	.	.	LowGQX	.	GT	./.
chr1	87597943	.	G	.	.	LowGQX	END=87597948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87597949	.	C	.	.	LowGQX	END=87598599	GT	./.
chr1	87599296	.	G	.	.	LowGQX	END=87599401	GT	./.
chr1	87599647	.	G	.	.	LowGQX	END=87599746	GT	./.
chr1	87633789	.	T	.	.	LowGQX	END=87633888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87797697	.	C	.	.	LowGQX	END=87797760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87797761	.	G	.	.	LowGQX	END=87797936	GT	./.
chr1	87805217	.	A	.	.	LowGQX	END=87805317	GT	./.
chr1	87805728	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805729	.	G	.	.	LowGQX	END=87805730	GT	./.
chr1	87805731	.	G	.	.	LowGQX	END=87805745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805746	.	C	.	.	LowGQX	END=87805747	GT	./.
chr1	87805748	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805749	.	G	.	.	LowGQX	.	GT	./.
chr1	87805750	.	C	.	.	LowGQX	END=87805752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805753	.	G	.	.	LowGQX	.	GT	./.
chr1	87805754	.	A	.	.	LowGQX	END=87805757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805758	.	G	.	.	LowGQX	END=87805761	GT	./.
chr1	87805762	.	G	.	.	LowGQX	END=87805765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805766	.	C	.	.	LowGQX	.	GT	./.
chr1	87805767	.	C	.	.	LowGQX	END=87805769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805770	.	G	.	.	LowGQX	.	GT	./.
chr1	87805771	.	A	.	.	LowGQX	END=87805774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805775	.	C	.	.	LowGQX	.	GT	./.
chr1	87805776	.	G	.	.	LowGQX	END=87805777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805778	.	T	.	.	LowGQX	END=87805798	GT	./.
chr1	87805799	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805800	.	T	.	.	LowGQX	END=87805801	GT	./.
chr1	87805802	.	T	.	.	LowGQX	END=87805814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805815	.	A	.	.	LowGQX	.	GT	./.
chr1	87805816	.	T	.	.	LowGQX	END=87805824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805825	.	A	.	.	LowGQX	.	GT	./.
chr1	87805826	.	G	.	.	LowGQX	END=87805838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805839	.	G	.	.	LowGQX	.	GT	./.
chr1	87805840	.	C	.	.	LowGQX	END=87805851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805852	.	A	.	.	LowGQX	.	GT	./.
chr1	87805853	.	C	.	.	LowGQX	END=87805865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805866	.	C	.	.	LowGQX	.	GT	./.
chr1	87805867	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805868	.	C	.	.	LowGQX	.	GT	./.
chr1	87805869	.	T	.	.	LowGQX	END=87805870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805871	.	C	.	.	LowGQX	.	GT	./.
chr1	87805872	.	T	.	.	LowGQX	END=87805887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805888	.	G	.	.	LowGQX	.	GT	./.
chr1	87805889	.	A	.	.	LowGQX	END=87805890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805891	.	T	.	.	LowGQX	.	GT	./.
chr1	87805892	.	A	.	.	LowGQX	END=87805894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805895	.	C	.	.	LowGQX	.	GT	./.
chr1	87805896	.	A	.	.	LowGQX	END=87805903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805904	.	C	.	.	LowGQX	.	GT	./.
chr1	87805905	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805906	.	A	.	.	LowGQX	.	GT	./.
chr1	87805907	.	A	.	.	LowGQX	END=87805908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805909	.	A	.	.	LowGQX	.	GT	./.
chr1	87805910	.	A	.	.	LowGQX	END=87805911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87805912	.	C	.	.	LowGQX	.	GT	./.
chr1	87805913	.	T	.	.	LowGQX	END=87805917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	87810426	.	C	.	.	LowGQX	END=87810525	GT	./.
chr1	87814381	.	A	.	.	LowGQX	END=87814429	GT	./.
chr1	87814430	.	A	.	.	LowGQX	END=87814480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89150178	.	T	.	.	LowGQX	END=89150391	GT	./.
chr1	89206669	.	A	.	.	LowGQX	END=89206973	GT	./.
chr1	89225873	.	A	.	.	LowGQX	END=89226061	GT	./.
chr1	89236033	.	A	.	.	LowGQX	END=89236154	GT	./.
chr1	89237102	.	A	.	.	LowGQX	END=89237167	GT	./.
chr1	89237168	.	G	.	.	LowGQX	END=89237233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89237234	.	A	.	.	LowGQX	.	GT	./.
chr1	89237235	.	A	.	.	LowGQX	END=89237251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89237344	.	A	.	.	LowGQX	END=89237431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89237432	.	T	.	.	LowGQX	END=89237564	GT	./.
chr1	89246791	.	C	.	.	LowGQX	END=89246890	GT	./.
chr1	89250320	.	A	.	.	LowGQX	END=89250509	GT	./.
chr1	89251785	.	A	.	.	LowGQX	END=89251894	GT	./.
chr1	89251895	.	G	.	.	LowGQX	END=89251898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89270072	.	A	.	.	LowGQX	END=89270219	GT	./.
chr1	89270517	.	T	.	.	LowGQX	END=89270616	GT	./.
chr1	89271178	.	A	.	.	LowGQX	END=89271493	GT	./.
chr1	89271572	.	A	.	.	LowGQX	END=89271702	GT	./.
chr1	89272994	.	A	.	.	LowGQX	END=89273128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89273200	.	T	.	.	LowGQX	END=89273219	GT	./.
chr1	89273220	.	A	.	.	LowGQX	END=89273224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89273225	.	T	.	.	LowGQX	.	GT	./.
chr1	89273226	.	T	.	.	LowGQX	END=89273237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89273238	.	T	.	.	LowGQX	.	GT	./.
chr1	89273239	.	A	.	.	LowGQX	END=89273299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89273363	.	T	.	.	LowGQX	END=89273437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89273438	.	G	.	.	LowGQX	END=89273462	GT	./.
chr1	89279218	.	T	.	.	LowGQX	END=89279414	GT	./.
chr1	89279415	.	G	.	.	LowGQX	END=89279447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89281068	.	A	.	.	LowGQX	END=89281167	GT	./.
chr1	89287606	.	A	.	.	LowGQX	END=89287705	GT	./.
chr1	89289982	.	A	.	.	LowGQX	END=89290081	GT	./.
chr1	89294162	.	A	.	.	LowGQX	END=89294308	GT	./.
chr1	89294649	.	C	.	.	LowGQX	END=89294658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89294659	.	G	.	.	LowGQX	END=89294660	GT	./.
chr1	89294661	.	C	.	.	LowGQX	END=89294748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89298375	.	G	.	.	LowGQX	END=89298536	GT	./.
chr1	89298751	.	T	.	.	LowGQX	END=89298850	GT	./.
chr1	89298926	.	A	.	.	LowGQX	END=89299133	GT	./.
chr1	89318854	.	G	.	.	LowGQX	END=89319031	GT	./.
chr1	89322887	.	A	.	.	LowGQX	END=89322888	GT	./.
chr1	89322889	.	C	.	.	LowGQX	END=89322897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89322898	.	T	.	.	LowGQX	END=89322899	GT	./.
chr1	89322900	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89322901	.	T	.	.	LowGQX	.	GT	./.
chr1	89322902	.	C	.	.	LowGQX	END=89322905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89322906	.	T	.	.	LowGQX	.	GT	./.
chr1	89322907	.	C	.	.	LowGQX	END=89322932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89322933	.	A	.	.	LowGQX	END=89323172	GT	./.
chr1	89325563	.	A	.	.	LowGQX	END=89325696	GT	./.
chr1	89325821	.	A	.	.	LowGQX	END=89325971	GT	./.
chr1	89329662	.	A	.	.	LowGQX	END=89329799	GT	./.
chr1	89352942	.	A	.	.	LowGQX	END=89353101	GT	./.
chr1	89357125	.	G	.	.	LowGQX	END=89357221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89357222	.	A	.	.	LowGQX	END=89357224	GT	./.
chr1	89401848	.	T	.	.	LowGQX	END=89401916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89401917	.	T	.	.	LowGQX	END=89401947	GT	./.
chr1	89408682	.	A	.	.	LowGQX	END=89408781	GT	./.
chr1	89408961	.	C	.	.	LowGQX	END=89409119	GT	./.
chr1	89414772	.	A	.	.	LowGQX	END=89414962	GT	./.
chr1	89418741	.	C	.	.	LowGQX	END=89418840	GT	./.
chr1	89420821	.	A	.	.	LowGQX	END=89420826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89420827	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	89420828	.	T	.	.	LowGQX	END=89420863	GT	./.
chr1	89420864	.	C	.	.	LowGQX	END=89420867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89420868	.	T	.	.	LowGQX	.	GT	./.
chr1	89420869	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89420870	.	C	.	.	LowGQX	.	GT	./.
chr1	89420871	.	T	.	.	LowGQX	END=89420873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89420874	.	T	.	.	LowGQX	.	GT	./.
chr1	89420875	.	G	.	.	LowGQX	END=89420887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89420888	.	C	.	.	LowGQX	.	GT	./.
chr1	89420889	.	C	.	.	LowGQX	END=89420890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89420891	.	A	.	.	LowGQX	.	GT	./.
chr1	89420892	.	C	.	.	LowGQX	END=89420893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89420894	.	T	.	.	LowGQX	.	GT	./.
chr1	89420895	.	A	.	.	LowGQX	END=89420897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89420898	.	T	.	.	LowGQX	END=89420899	GT	./.
chr1	89420900	.	G	.	.	LowGQX	END=89420913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89420914	.	C	.	.	LowGQX	.	GT	./.
chr1	89420915	.	A	.	.	LowGQX	END=89420920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89426848	.	A	.	.	LowGQX	END=89426901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89426902	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	89426903	.	C	.	.	LowGQX	END=89426915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89426916	.	T	.	.	LowGQX	.	GT	./.
chr1	89426917	.	G	.	.	LowGQX	END=89426935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89426936	.	T	.	.	LowGQX	.	GT	./.
chr1	89426937	.	C	.	.	LowGQX	END=89426972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89427062	.	A	.	.	LowGQX	END=89427152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89427153	.	A	.	.	LowGQX	END=89427191	GT	./.
chr1	89427736	.	A	.	.	LowGQX	END=89427835	GT	./.
chr1	89430320	.	G	.	.	LowGQX	END=89430419	GT	./.
chr1	89430510	.	A	.	.	LowGQX	END=89430519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89430520	.	C	.	.	LowGQX	.	GT	./.
chr1	89430521	.	C	.	.	LowGQX	END=89430529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89430530	.	T	.	.	LowGQX	.	GT	./.
chr1	89430531	.	A	.	.	LowGQX	END=89430538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89430539	.	A	.	.	LowGQX	.	GT	./.
chr1	89430540	.	A	.	.	LowGQX	END=89430573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89430574	.	T	.	.	LowGQX	END=89430658	GT	./.
chr1	89430659	.	G	.	.	LowGQX	END=89430677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89430678	.	A	.	.	LowGQX	.	GT	./.
chr1	89430679	.	A	.	.	LowGQX	END=89430699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89434351	.	A	.	.	LowGQX	END=89434530	GT	./.
chr1	89435020	.	A	.	.	LowGQX	END=89435028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89435029	.	T	.	.	LowGQX	.	GT	./.
chr1	89435030	.	C	.	.	LowGQX	END=89435051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89435052	.	G	.	.	LowGQX	END=89435053	GT	./.
chr1	89435054	.	A	.	.	LowGQX	END=89435100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89435101	.	C	.	.	LowGQX	.	GT	./.
chr1	89435102	.	T	.	.	LowGQX	END=89435104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89435105	.	C	.	.	LowGQX	.	GT	./.
chr1	89435106	.	A	.	.	LowGQX	END=89435130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89435131	.	G	.	.	LowGQX	END=89435171	GT	./.
chr1	89448335	.	T	.	.	LowGQX	END=89448934	GT	./.
chr1	89448935	.	C	.	.	LowGQX	END=89448982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89448983	.	C	.	.	LowGQX	.	GT	./.
chr1	89448984	.	C	.	.	LowGQX	END=89448993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89448994	.	G	.	.	LowGQX	.	GT	./.
chr1	89448995	.	C	.	.	LowGQX	END=89449010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449011	.	G	.	.	LowGQX	.	GT	./.
chr1	89449012	.	T	.	.	LowGQX	END=89449015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89449016	.	G	.	.	LowGQX	.	GT	./.
chr1	89449017	.	A	.	.	LowGQX	END=89449165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449166	.	C	.	.	LowGQX	.	GT	./.
chr1	89449167	.	C	.	.	LowGQX	END=89449171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449172	.	C	.	.	LowGQX	.	GT	./.
chr1	89449173	.	T	.	.	LowGQX	END=89449183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449184	.	A	.	.	LowGQX	.	GT	./.
chr1	89449185	.	A	.	.	LowGQX	END=89449192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449193	.	G	.	.	LowGQX	.	GT	./.
chr1	89449194	.	G	.	.	LowGQX	END=89449197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89449198	.	A	.	.	LowGQX	.	GT	./.
chr1	89449199	.	C	.	.	LowGQX	END=89449203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89449204	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	89449205	.	C	.	.	LowGQX	END=89449223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449224	.	G	.	.	LowGQX	END=89449225	GT	./.
chr1	89449226	.	C	.	.	LowGQX	END=89449232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449233	.	T	.	.	LowGQX	.	GT	./.
chr1	89449234	.	A	.	.	LowGQX	END=89449248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449249	.	T	.	.	LowGQX	.	GT	./.
chr1	89449250	.	G	.	.	LowGQX	END=89449266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449267	.	C	.	.	LowGQX	.	GT	./.
chr1	89449268	.	A	.	.	LowGQX	END=89449271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449272	.	T	.	.	LowGQX	.	GT	./.
chr1	89449273	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449274	.	A	.	.	LowGQX	.	GT	./.
chr1	89449275	.	T	.	.	LowGQX	END=89449329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449330	.	T	.	.	LowGQX	.	GT	./.
chr1	89449331	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89449332	.	C	.	.	LowGQX	.	GT	./.
chr1	89449333	.	T	.	.	LowGQX	END=89449354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449355	.	G	.	.	LowGQX	.	GT	./.
chr1	89449356	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449357	.	A	.	.	LowGQX	.	GT	./.
chr1	89449358	.	A	.	.	LowGQX	END=89449364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449365	.	T	.	.	LowGQX	END=89449366	GT	./.
chr1	89449367	.	G	.	.	LowGQX	END=89449370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449371	.	T	.	.	LowGQX	END=89449373	GT	./.
chr1	89449374	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449375	.	G	.	.	LowGQX	END=89449376	GT	./.
chr1	89449377	.	T	.	.	LowGQX	END=89449378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449379	.	T	.	.	LowGQX	.	GT	./.
chr1	89449380	.	C	.	.	LowGQX	END=89449382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449383	.	G	.	.	LowGQX	.	GT	./.
chr1	89449384	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449385	.	T	.	.	LowGQX	.	GT	./.
chr1	89449386	.	C	.	.	LowGQX	END=89449392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449393	.	C	.	.	LowGQX	END=89449394	GT	./.
chr1	89449395	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	89449396	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	89449397	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89449398	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	89449399	.	T	.	.	LowGQX	END=89449405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89449406	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	89449407	.	C	.	.	LowGQX	END=89449408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89449409	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	89449410	.	T	.	.	LowGQX	END=89449413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89449414	.	T	.	.	LowGQX	.	GT	./.
chr1	89449415	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89449416	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	89449417	.	A	.	.	LowGQX	END=89449421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89449422	.	T	.	.	LowGQX	.	GT	./.
chr1	89449423	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89449424	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	89449425	.	C	.	.	LowGQX	END=89449432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449433	.	G	.	.	LowGQX	END=89449435	GT	./.
chr1	89449436	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449437	.	C	.	.	LowGQX	END=89449443	GT	./.
chr1	89449444	.	T	.	.	LowGQX	END=89449446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449447	.	C	.	.	LowGQX	END=89449449	GT	./.
chr1	89449450	.	A	.	.	LowGQX	END=89449456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449457	.	T	.	.	LowGQX	.	GT	./.
chr1	89449458	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449459	.	C	.	.	LowGQX	END=89449460	GT	./.
chr1	89449461	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449462	.	A	.	.	LowGQX	.	GT	./.
chr1	89449463	.	T	.	.	LowGQX	END=89449464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449465	.	A	.	.	LowGQX	END=89449467	GT	./.
chr1	89449468	.	C	.	.	LowGQX	END=89449469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449470	.	C	.	.	LowGQX	END=89449473	GT	./.
chr1	89449474	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449475	.	A	.	.	LowGQX	.	GT	./.
chr1	89449476	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449477	.	G	.	.	LowGQX	.	GT	./.
chr1	89449478	.	A	.	.	LowGQX	END=89449481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449482	.	G	.	.	LowGQX	END=89449483	GT	./.
chr1	89449484	.	T	.	.	LowGQX	END=89449487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449488	.	C	.	.	LowGQX	END=89449489	GT	./.
chr1	89449490	.	G	.	.	LowGQX	END=89449492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449493	.	C	.	.	LowGQX	END=89449495	GT	./.
chr1	89449496	.	T	.	.	LowGQX	END=89449506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449507	.	C	.	.	LowGQX	.	GT	./.
chr1	89449508	.	A	.	.	LowGQX	END=89449509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89449510	.	T	.	.	LowGQX	.	GT	./.
chr1	89449511	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89453933	.	A	.	.	LowGQX	END=89454035	GT	./.
chr1	89473405	.	G	.	.	LowGQX	END=89473537	GT	./.
chr1	89474573	.	T	.	.	LowGQX	END=89474825	GT	./.
chr1	89475023	.	T	.	.	LowGQX	END=89475025	GT	./.
chr1	89475026	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475027	.	A	.	.	LowGQX	.	GT	./.
chr1	89475028	.	A	.	.	LowGQX	END=89475029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475030	.	T	.	.	LowGQX	END=89475035	GT	./.
chr1	89475036	.	A	.	.	LowGQX	END=89475039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475040	.	T	.	.	LowGQX	.	GT	./.
chr1	89475041	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475042	.	T	.	.	LowGQX	.	GT	./.
chr1	89475043	.	A	.	.	LowGQX	END=89475044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475045	.	G	.	.	LowGQX	.	GT	./.
chr1	89475046	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475047	.	T	.	.	LowGQX	.	GT	./.
chr1	89475048	.	A	.	.	LowGQX	END=89475049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475050	.	T	.	.	LowGQX	.	GT	./.
chr1	89475051	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475052	.	T	.	.	LowGQX	.	GT	./.
chr1	89475053	.	G	.	.	LowGQX	END=89475054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475055	.	T	.	.	LowGQX	.	GT	./.
chr1	89475056	.	C	.	.	LowGQX	END=89475057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475058	.	T	.	.	LowGQX	.	GT	./.
chr1	89475059	.	T	.	.	LowGQX	END=89475064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475065	.	T	.	.	LowGQX	.	GT	./.
chr1	89475066	.	G	.	.	LowGQX	END=89475070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475071	.	T	.	.	LowGQX	.	GT	./.
chr1	89475072	.	C	.	.	LowGQX	END=89475080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475081	.	T	.	.	LowGQX	.	GT	./.
chr1	89475082	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475083	.	T	.	.	LowGQX	.	GT	./.
chr1	89475084	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475085	.	C	.	.	LowGQX	.	GT	./.
chr1	89475086	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475087	.	T	.	.	LowGQX	END=89475089	GT	./.
chr1	89475090	.	C	.	.	LowGQX	END=89475091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475092	.	T	.	.	LowGQX	.	GT	./.
chr1	89475093	.	T	.	.	LowGQX	END=89475101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475102	.	G	.	.	LowGQX	END=89475103	GT	./.
chr1	89475104	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475105	.	T	.	.	LowGQX	.	GT	./.
chr1	89475106	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475107	.	T	.	.	LowGQX	.	GT	./.
chr1	89475108	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475109	.	G	.	.	LowGQX	END=89475110	GT	./.
chr1	89475111	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475112	.	T	.	.	LowGQX	END=89475113	GT	./.
chr1	89475114	.	T	.	.	LowGQX	END=89475115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475116	.	T	.	.	LowGQX	.	GT	./.
chr1	89475117	.	G	.	.	LowGQX	END=89475151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475152	.	A	.	.	LowGQX	.	GT	./.
chr1	89475153	.	A	.	.	LowGQX	END=89475165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89475166	.	A	.	.	LowGQX	END=89475179	GT	./.
chr1	89476534	.	T	.	.	LowGQX	END=89476863	GT	./.
chr1	89477417	.	A	.	.	LowGQX	END=89477716	GT	./.
chr1	89478866	.	A	.	.	LowGQX	END=89479112	GT	./.
chr1	89479759	.	C	.	.	LowGQX	END=89479787	GT	./.
chr1	89479788	.	C	.	.	LowGQX	END=89479822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89479823	.	C	.	.	LowGQX	.	GT	./.
chr1	89479824	.	T	.	.	LowGQX	END=89479852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89479853	.	G	.	.	LowGQX	.	GT	./.
chr1	89479854	.	T	.	.	LowGQX	END=89479869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89479870	.	G	.	.	LowGQX	.	GT	./.
chr1	89479871	.	G	.	.	LowGQX	END=89479881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89479882	.	A	.	.	LowGQX	.	GT	./.
chr1	89479883	.	C	.	.	LowGQX	END=89479898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89479899	.	C	.	.	LowGQX	.	GT	./.
chr1	89479900	.	T	.	.	LowGQX	END=89479902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89479903	.	T	.	.	LowGQX	.	GT	./.
chr1	89479904	.	T	.	.	LowGQX	END=89479906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89479907	.	C	.	.	LowGQX	END=89479909	GT	./.
chr1	89479910	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89479911	.	C	.	.	LowGQX	END=89479912	GT	./.
chr1	89479913	.	C	.	.	LowGQX	END=89479923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89479924	.	G	.	.	LowGQX	.	GT	./.
chr1	89479925	.	A	.	.	LowGQX	END=89479927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89479928	.	T	.	.	LowGQX	.	GT	./.
chr1	89479929	.	T	.	.	LowGQX	END=89479950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89479951	.	T	.	.	LowGQX	.	GT	./.
chr1	89479952	.	C	.	.	LowGQX	END=89479954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89479955	.	T	.	.	LowGQX	.	GT	./.
chr1	89479956	.	C	.	.	LowGQX	END=89479964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89480051	.	T	.	.	LowGQX	END=89480150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89480228	.	A	.	.	LowGQX	END=89480341	GT	./.
chr1	89480968	.	A	.	.	LowGQX	END=89481099	GT	./.
chr1	89485804	.	C	.	.	LowGQX	END=89485903	GT	./.
chr1	89486117	.	T	.	.	LowGQX	END=89486186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89486187	.	T	.	.	LowGQX	END=89486406	GT	./.
chr1	89519036	.	C	.	.	LowGQX	END=89519153	GT	./.
chr1	89520353	.	G	.	.	LowGQX	END=89520560	GT	./.
chr1	89520744	.	T	.	.	LowGQX;LowMQ	END=89520832	GT	./.
chr1	89520833	.	T	.	.	LowGQX	END=89520900	GT	./.
chr1	89521697	.	A	.	.	LowGQX	END=89521913	GT	./.
chr1	89522535	.	A	.	.	LowGQX	END=89522614	GT	./.
chr1	89522615	.	G	.	.	LowGQX	END=89522645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89522646	.	G	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	89522647	.	T	.	.	LowGQX	END=89522803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89522804	.	C	.	.	LowGQX	END=89522819	GT	./.
chr1	89523673	.	A	.	.	LowGQX	END=89523919	GT	./.
chr1	89524522	.	A	.	.	LowGQX	END=89524728	GT	./.
chr1	89524998	.	A	.	.	LowGQX	END=89525111	GT	./.
chr1	89525878	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	89525879	.	C	.	.	LowGQX	END=89525934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89525935	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	89525936	.	T	.	.	LowGQX	END=89525947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89525948	.	G	.	.	LowGQX	.	GT	./.
chr1	89525949	.	C	.	.	LowGQX	END=89525976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89525977	.	T	.	.	LowGQX	.	GT	./.
chr1	89525978	.	G	.	.	LowGQX	END=89525987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89525988	.	C	.	.	LowGQX	END=89526009	GT	./.
chr1	89528726	.	A	.	.	LowGQX	END=89528919	GT	./.
chr1	89573856	.	T	.	.	LowGQX	END=89573933	GT	./.
chr1	89573934	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89573935	.	T	.	.	LowGQX	.	GT	./.
chr1	89573936	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89573937	.	T	.	.	LowGQX	.	GT	./.
chr1	89573938	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89573939	.	A	.	.	LowGQX	END=89573940	GT	./.
chr1	89573941	.	T	.	.	LowGQX	END=89573943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89573944	.	C	.	.	LowGQX	.	GT	./.
chr1	89573945	.	G	.	.	LowGQX	END=89573946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89573947	.	A	.	.	LowGQX	END=89573948	GT	./.
chr1	89573949	.	C	.	.	LowGQX	END=89573954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89573955	.	T	.	.	LowGQX	END=89573956	GT	./.
chr1	89573957	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89573958	.	A	.	.	LowGQX	.	GT	./.
chr1	89573959	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89573960	.	A	.	.	LowGQX	.	GT	./.
chr1	89573961	.	A	.	.	LowGQX	END=89573964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89573965	.	G	.	.	LowGQX	END=89573966	GT	./.
chr1	89573967	.	T	.	.	LowGQX	END=89573969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89573970	.	T	.	.	LowGQX	.	GT	./.
chr1	89573971	.	G	.	.	LowGQX	END=89573972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89573973	.	T	.	.	LowGQX	.	GT	./.
chr1	89573974	.	C	.	.	LowGQX	END=89573976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89575348	.	G	.	.	LowGQX	END=89575555	GT	./.
chr1	89575845	.	A	.	.	LowGQX	END=89576004	GT	./.
chr1	89578153	.	A	.	.	LowGQX	END=89578369	GT	./.
chr1	89579697	.	A	.	.	LowGQX	END=89579712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89579713	.	G	.	.	LowGQX	END=89579714	GT	./.
chr1	89579715	.	A	.	.	LowGQX	END=89579722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89579723	.	G	.	.	LowGQX	.	GT	./.
chr1	89579724	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89579725	.	C	.	.	LowGQX	END=89579726	GT	./.
chr1	89579727	.	A	.	.	LowGQX	END=89579733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89579734	.	T	.	.	LowGQX	.	GT	./.
chr1	89579735	.	G	.	.	LowGQX	END=89579742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89579743	.	T	.	.	LowGQX	.	GT	./.
chr1	89579744	.	C	.	.	LowGQX	END=89579749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89579750	.	G	.	.	LowGQX	.	GT	./.
chr1	89579751	.	A	.	.	LowGQX	END=89579752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89579753	.	G	.	.	LowGQX	.	GT	./.
chr1	89579754	.	A	.	.	LowGQX	END=89579761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89579762	.	G	.	.	LowGQX	.	GT	./.
chr1	89579763	.	G	.	.	LowGQX	END=89579764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89579765	.	C	.	.	LowGQX	.	GT	./.
chr1	89579766	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89579767	.	C	.	.	LowGQX	.	GT	./.
chr1	89579768	.	T	.	.	LowGQX	END=89579779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89579780	.	C	.	.	LowGQX	END=89579956	GT	./.
chr1	89579957	.	G	.	.	LowGQX	END=89579974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89579975	.	T	.	.	LowGQX	END=89579977	GT	./.
chr1	89579978	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89579979	.	C	.	.	LowGQX	.	GT	./.
chr1	89579980	.	C	.	.	LowGQX	END=89579981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89582673	.	A	.	.	LowGQX	END=89582813	GT	./.
chr1	89582814	.	C	.	.	LowGQX	END=89582919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89583248	.	A	.	.	LowGQX	END=89583458	GT	./.
chr1	89585860	.	A	.	.	LowGQX	END=89585871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89585872	.	C	.	.	LowGQX	.	GT	./.
chr1	89585873	.	C	.	.	LowGQX	END=89585889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89585890	.	T	.	.	LowGQX	.	GT	./.
chr1	89585891	.	G	.	.	LowGQX	END=89585902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89585903	.	A	.	.	LowGQX	.	GT	./.
chr1	89585904	.	T	.	.	LowGQX	END=89585924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89585925	.	A	.	.	LowGQX	END=89586029	GT	./.
chr1	89586784	.	A	.	.	LowGQX	END=89586799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89586800	.	A	.	.	LowGQX	.	GT	./.
chr1	89586801	.	T	.	.	LowGQX	END=89586806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89586807	.	A	.	.	LowGQX	.	GT	./.
chr1	89586808	.	A	.	.	LowGQX	END=89586818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89586819	.	T	.	.	LowGQX	.	GT	./.
chr1	89586820	.	T	.	.	LowGQX	END=89586822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89586823	.	T	.	.	LowGQX	.	GT	./.
chr1	89586824	.	A	.	.	LowGQX	END=89586825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89586826	.	C	.	.	LowGQX	.	GT	./.
chr1	89586827	.	T	.	.	LowGQX	END=89586834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89586835	.	A	.	.	LowGQX	.	GT	./.
chr1	89586836	.	T	.	.	LowGQX	END=89586843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89586844	.	G	.	.	LowGQX	END=89586955	GT	./.
chr1	89587458	.	A	.	.	LowGQX	END=89587651	GT	./.
chr1	89597830	.	C	.	.	LowGQX	END=89597888	GT	./.
chr1	89597889	.	T	.	.	LowGQX	END=89597893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89597894	.	T	.	.	LowGQX	.	GT	./.
chr1	89597895	.	T	.	.	LowGQX	END=89597918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89597919	.	C	.	.	LowGQX	.	GT	./.
chr1	89597920	.	C	.	.	LowGQX	END=89597931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89597932	.	G	.	.	LowGQX	.	GT	./.
chr1	89597933	.	C	.	.	LowGQX	END=89597944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89597945	.	T	.	.	LowGQX	.	GT	./.
chr1	89597946	.	G	.	.	LowGQX	END=89597949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89597950	.	G	.	.	LowGQX	.	GT	./.
chr1	89597951	.	C	.	.	LowGQX	END=89597983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89597984	.	C	.	.	LowGQX	.	GT	./.
chr1	89597985	.	T	.	.	LowGQX	END=89598032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89598033	.	A	.	.	LowGQX	.	GT	./.
chr1	89598034	.	T	.	.	LowGQX	END=89598035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89598036	.	T	.	.	LowGQX	.	GT	./.
chr1	89598037	.	A	.	.	LowGQX	END=89598039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89598040	.	G	.	.	LowGQX	END=89598088	GT	./.
chr1	89598939	.	A	.	.	LowGQX	END=89599136	GT	./.
chr1	89607227	.	A	.	.	LowGQX	END=89607333	GT	./.
chr1	89613248	.	A	.	.	LowGQX	END=89613464	GT	./.
chr1	89614973	.	A	.	.	LowGQX	END=89614976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89614977	.	C	.	.	LowGQX	.	GT	./.
chr1	89614978	.	A	.	.	LowGQX	END=89614997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89614998	.	G	.	.	LowGQX	.	GT	./.
chr1	89614999	.	G	.	.	LowGQX	END=89615005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89615006	.	T	.	.	LowGQX	END=89615007	GT	./.
chr1	89615008	.	T	.	.	LowGQX	END=89615086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89615087	.	T	.	.	LowGQX	.	GT	./.
chr1	89615088	.	C	.	.	LowGQX	END=89615158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89615159	.	T	.	.	LowGQX	END=89615257	GT	./.
chr1	89616011	.	A	.	.	LowGQX	END=89616260	GT	./.
chr1	89617949	.	A	.	.	LowGQX	END=89618048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89618049	.	A	.	.	LowGQX	.	GT	./.
chr1	89618050	.	A	.	.	LowGQX	END=89618137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89618138	.	A	.	.	LowGQX	END=89618149	GT	./.
chr1	89618349	.	A	.	.	LowGQX	END=89618462	GT	./.
chr1	89630362	.	A	.	.	LowGQX	END=89630543	GT	./.
chr1	89637427	.	A	.	.	LowGQX	END=89637481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89637482	.	A	.	.	LowGQX	END=89637620	GT	./.
chr1	89650935	.	T	.	.	LowGQX	END=89650957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89650958	.	T	.	.	LowGQX	.	GT	./.
chr1	89650959	.	T	.	.	LowGQX	END=89650960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89650961	.	T	.	.	LowGQX	.	GT	./.
chr1	89650962	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89650963	.	T	.	.	LowGQX	.	GT	./.
chr1	89650964	.	C	.	.	LowGQX	END=89651005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89651006	.	C	.	.	LowGQX	.	GT	./.
chr1	89651007	.	A	.	.	LowGQX	END=89651015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89651016	.	C	.	.	LowGQX	.	GT	./.
chr1	89651017	.	T	.	.	LowGQX	END=89651028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89651029	.	G	.	.	LowGQX	.	GT	./.
chr1	89651030	.	G	.	.	LowGQX	END=89651048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89651049	.	T	.	.	LowGQX	END=89651054	GT	./.
chr1	89651055	.	T	.	.	LowGQX	END=89651154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89652014	.	A	.	.	LowGQX	END=89652211	GT	./.
chr1	89652681	.	A	.	.	LowGQX	END=89652690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89652691	.	G	.	.	LowGQX	.	GT	./.
chr1	89652692	.	C	.	.	LowGQX	END=89652736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89652737	.	C	.	.	LowGQX	.	GT	./.
chr1	89652738	.	C	.	.	LowGQX	END=89652763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89652764	.	A	.	.	LowGQX	.	GT	./.
chr1	89652765	.	G	.	.	LowGQX	END=89652779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89652780	.	G	.	.	LowGQX	.	GT	./.
chr1	89652781	.	T	.	.	LowGQX	END=89652782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89652783	.	T	.	.	LowGQX	.	GT	./.
chr1	89652784	.	G	.	.	LowGQX	END=89652787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89654263	.	A	.	.	LowGQX	END=89654479	GT	./.
chr1	89655719	.	A	.	.	LowGQX	END=89656003	GT	./.
chr1	89656942	.	A	.	.	LowGQX	END=89657001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89657002	.	A	.	.	LowGQX	END=89657191	GT	./.
chr1	89658585	.	A	.	.	LowGQX	END=89658785	GT	./.
chr1	89658984	.	A	.	.	LowGQX	END=89659033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89659034	.	A	.	.	LowGQX	END=89659097	GT	./.
chr1	89660978	.	A	.	.	LowGQX	END=89661109	GT	./.
chr1	89662791	.	A	.	.	LowGQX	END=89662981	GT	./.
chr1	89662982	.	G	.	.	LowGQX	END=89662984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89662985	.	A	.	.	LowGQX	.	GT	./.
chr1	89662986	.	A	.	.	LowGQX	END=89662989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89664448	.	T	.	.	LowGQX	END=89664546	GT	./.
chr1	89664547	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89726385	.	C	.	.	LowGQX	END=89726477	GT	./.
chr1	89726478	.	G	.	.	LowGQX	END=89726480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89726481	.	C	.	.	LowGQX	.	GT	./.
chr1	89726482	.	T	.	.	LowGQX	END=89726496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89726497	.	G	.	.	LowGQX	.	GT	./.
chr1	89726498	.	T	.	.	LowGQX	END=89726500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89726501	.	C	.	.	LowGQX	.	GT	./.
chr1	89726502	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89727901	.	A	.	.	LowGQX	END=89728086	GT	./.
chr1	89728313	.	T	.	.	LowGQX	END=89728470	GT	./.
chr1	89729417	.	A	.	.	LowGQX	END=89729633	GT	./.
chr1	89730367	.	A	.	.	LowGQX	END=89730393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89730394	.	T	.	.	LowGQX	.	GT	./.
chr1	89730395	.	C	.	.	LowGQX	END=89730403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89730404	.	T	.	.	LowGQX	.	GT	./.
chr1	89730405	.	G	.	.	LowGQX	END=89730407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89730408	.	A	.	.	LowGQX	.	GT	./.
chr1	89730409	.	G	.	.	LowGQX	END=89730431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89730432	.	G	.	.	LowGQX	.	GT	./.
chr1	89730433	.	G	.	.	LowGQX	END=89730445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89730446	.	T	.	.	LowGQX	END=89730651	GT	./.
chr1	89732027	.	A	.	.	LowGQX	END=89732041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89732042	.	C	.	.	LowGQX	END=89732273	GT	./.
chr1	89732628	.	A	.	.	LowGQX	END=89732838	GT	./.
chr1	89733098	.	A	.	.	LowGQX	END=89733211	GT	./.
chr1	89734370	.	A	.	.	LowGQX	END=89734541	GT	./.
chr1	89735047	.	A	.	.	LowGQX	END=89735240	GT	./.
chr1	89834109	.	C	.	.	LowGQX	END=89834302	GT	./.
chr1	89835103	.	A	.	.	LowGQX	END=89835234	GT	./.
chr1	89843600	.	A	.	.	LowGQX	END=89843731	GT	./.
chr1	89843732	.	G	.	.	LowGQX	END=89843768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89843769	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	89843770	.	C	.	.	LowGQX	END=89843773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89843964	.	C	.	.	LowGQX	END=89843998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89843999	.	T	.	.	LowGQX	.	GT	./.
chr1	89844000	.	A	.	.	LowGQX	END=89844011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89844012	.	G	.	.	LowGQX	.	GT	./.
chr1	89844013	.	T	.	.	LowGQX	END=89844040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89844041	.	A	.	.	LowGQX	END=89844174	GT	./.
chr1	89845943	.	A	.	.	LowGQX	END=89846192	GT	./.
chr1	89847251	.	A	.	.	LowGQX	END=89847535	GT	./.
chr1	89848221	.	A	.	.	LowGQX	END=89848271	GT	./.
chr1	89848272	.	C	.	.	LowGQX	END=89848291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89848292	.	G	.	.	LowGQX	.	GT	./.
chr1	89848293	.	C	.	.	LowGQX	END=89848297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89848298	.	C	.	.	LowGQX	.	GT	./.
chr1	89848299	.	T	.	.	LowGQX	END=89848321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89848322	.	A	.	.	LowGQX	.	GT	./.
chr1	89848323	.	T	.	.	LowGQX	END=89848328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89848329	.	G	.	.	LowGQX	.	GT	./.
chr1	89848330	.	T	.	.	LowGQX	END=89848332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89848333	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	89848334	.	T	.	.	LowGQX	END=89848337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89848338	.	C	.	.	LowGQX	.	GT	./.
chr1	89848339	.	A	.	.	LowGQX	END=89848341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89848342	.	A	.	.	LowGQX	.	GT	./.
chr1	89848343	.	A	.	.	LowGQX	END=89848362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89848363	.	G	.	.	LowGQX	END=89848364	GT	./.
chr1	89848365	.	A	.	.	LowGQX	END=89848377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89848378	.	G	.	.	LowGQX	.	GT	./.
chr1	89848379	.	G	.	.	LowGQX	END=89848387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	89848388	.	G	.	.	LowGQX	END=89848389	GT	./.
chr1	89848390	.	A	.	.	LowGQX	END=89848424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89848425	.	A	.	.	LowGQX	END=89848426	GT	./.
chr1	89848427	.	G	.	.	LowGQX	END=89848428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89848429	.	A	.	.	LowGQX	.	GT	./.
chr1	89848430	.	G	.	.	LowGQX	END=89848437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89849159	.	C	.	.	LowGQX	END=89849315	GT	./.
chr1	89849650	.	A	.	.	LowGQX	END=89849847	GT	./.
chr1	89850787	.	A	.	.	LowGQX	END=89850911	GT	./.
chr1	89850912	.	A	.	.	LowGQX	END=89850948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89850949	.	T	.	.	LowGQX	.	GT	./.
chr1	89850950	.	G	.	.	LowGQX	END=89851004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	89851005	.	A	.	.	LowGQX	.	GT	./.
chr1	89851006	.	A	.	.	LowGQX	END=89851030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90048208	.	T	.	.	LowGQX	END=90048953	GT	./.
chr1	90048954	.	G	.	.	LowGQX	END=90048979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90048980	.	A	.	.	LowGQX	.	GT	./.
chr1	90048981	.	T	.	.	LowGQX	END=90048988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90048989	.	A	.	.	LowGQX	.	GT	./.
chr1	90048990	.	C	.	.	LowGQX	END=90049110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90049111	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	90049112	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90049113	.	T	.	.	LowGQX	.	GT	./.
chr1	90049114	.	A	.	.	LowGQX	END=90049122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90049123	.	T	.	.	LowGQX	.	GT	./.
chr1	90049124	.	C	.	.	LowGQX	END=90049144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90049145	.	T	.	.	LowGQX	.	GT	./.
chr1	90049146	.	A	.	.	LowGQX	END=90049182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90049183	.	T	.	.	LowGQX	END=90050350	GT	./.
chr1	90058328	.	A	.	.	LowGQX	END=90058604	GT	./.
chr1	90152031	.	A	.	.	LowGQX	END=90152172	GT	./.
chr1	90171829	.	T	.	.	LowGQX	END=90171928	GT	./.
chr1	90178266	.	A	.	.	LowGQX	END=90178712	GT	./.
chr1	90178713	.	G	.	.	LowGQX	END=90178742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90178743	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	90178744	.	C	.	.	LowGQX	END=90178765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90178766	.	T	.	.	LowGQX	.	GT	./.
chr1	90178767	.	T	.	.	LowGQX	END=90178807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90178808	.	G	.	.	LowGQX	.	GT	./.
chr1	90178809	.	C	.	.	LowGQX	END=90178811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90178812	.	G	.	.	LowGQX	.	GT	./.
chr1	90178813	.	G	.	.	LowGQX	END=90178872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90178873	.	C	.	.	LowGQX	.	GT	./.
chr1	90178874	.	A	.	.	LowGQX	END=90178885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90178886	.	G	.	.	LowGQX	.	GT	./.
chr1	90178887	.	A	.	.	LowGQX	END=90178911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90178912	.	G	.	.	LowGQX	.	GT	./.
chr1	90178913	.	T	.	.	LowGQX	END=90178969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90178970	.	A	.	.	LowGQX	END=90179611	GT	./.
chr1	90179612	.	G	.	.	LowGQX	END=90179643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90179644	.	A	.	.	LowGQX	.	GT	./.
chr1	90179645	.	C	.	.	LowGQX	END=90179660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90179661	.	A	.	.	LowGQX	END=90179662	GT	./.
chr1	90179663	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90179664	.	G	.	.	LowGQX	.	GT	./.
chr1	90179665	.	G	.	.	LowGQX	END=90179679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90179680	.	A	.	.	LowGQX	.	GT	./.
chr1	90179681	.	G	.	.	LowGQX	END=90179697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90179698	.	C	.	.	LowGQX	.	GT	./.
chr1	90179699	.	T	.	.	LowGQX	END=90179707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90179708	.	C	.	.	LowGQX	.	GT	./.
chr1	90179709	.	A	.	.	LowGQX	END=90179711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90179712	.	A	.	.	LowGQX	.	GT	./.
chr1	90179713	.	T	.	.	LowGQX	END=90179745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90179746	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	90179747	.	G	.	.	LowGQX	END=90179768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90179769	.	T	.	.	LowGQX	.	GT	./.
chr1	90179770	.	C	.	.	LowGQX	END=90179772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90179773	.	T	.	.	LowGQX	END=90179774	GT	./.
chr1	90179775	.	T	.	.	LowGQX	END=90179797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90179798	.	C	.	.	LowGQX	.	GT	./.
chr1	90179799	.	C	.	.	LowGQX	END=90179810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90179811	.	T	.	.	LowGQX	.	GT	./.
chr1	90179812	.	T	.	.	LowGQX	END=90179819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90179820	.	C	.	.	LowGQX	.	GT	./.
chr1	90179821	.	C	.	.	LowGQX	END=90179870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90179871	.	T	.	.	LowGQX	END=90180543	GT	./.
chr1	90309156	.	G	.	.	LowGQX	END=90309170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90309171	.	T	.	.	LowGQX	END=90309255	GT	./.
chr1	90398626	.	G	.	.	LowGQX	END=90398656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90398657	.	T	.	.	LowGQX	.	GT	./.
chr1	90398658	.	A	.	.	LowGQX	END=90398696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90398697	.	T	.	.	LowGQX	.	GT	./.
chr1	90398698	.	G	.	.	LowGQX	END=90398701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90398702	.	T	.	.	LowGQX	.	GT	./.
chr1	90398703	.	G	.	.	LowGQX	END=90398773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90398774	.	A	.	.	LowGQX	END=90399265	GT	./.
chr1	90399266	.	G	.	.	LowGQX	END=90399275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90399276	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	90399277	.	C	.	.	LowGQX	END=90399376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90399377	.	T	.	.	LowGQX	.	GT	./.
chr1	90399378	.	A	.	.	LowGQX	END=90399386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90399387	.	A	.	.	LowGQX	END=90399388	GT	./.
chr1	90399389	.	C	.	.	LowGQX	END=90399414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90399415	.	C	.	.	LowGQX	END=90399514	GT	./.
chr1	90399515	.	C	.	.	LowGQX	END=90399678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90399679	.	T	.	.	LowGQX	END=90399910	GT	./.
chr1	90399911	.	G	.	.	LowGQX	END=90399929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90399930	.	G	.	.	LowGQX	.	GT	./.
chr1	90399931	.	G	.	.	LowGQX	END=90399967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90399968	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	90399969	.	G	.	.	LowGQX	.	GT	./.
chr1	90399970	.	A	.	.	LowGQX	END=90399979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	90399980	.	G	.	.	LowGQX	.	GT	./.
chr1	90399981	.	A	.	.	LowGQX	END=90400013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	90400014	.	C	.	.	LowGQX	.	GT	./.
chr1	90400015	.	A	.	.	LowGQX	END=90400023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	90400024	.	G	.	.	LowGQX	.	GT	./.
chr1	90400025	.	C	.	.	LowGQX	END=90400029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	90400030	.	C	.	.	LowGQX	.	GT	./.
chr1	90400031	.	C	.	.	LowGQX	END=90400045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	90400046	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	90400047	.	T	.	.	LowGQX	END=90400070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	90400071	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	90400072	.	T	.	.	LowGQX	END=90400073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	90400074	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	90400075	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	90400076	.	C	.	.	LowGQX	END=90400185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	90400186	.	T	.	.	LowGQX	END=90400897	GT	./.
chr1	90400898	.	G	.	.	LowGQX	END=90400904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90400905	.	A	.	.	LowGQX	.	GT	./.
chr1	90400906	.	C	.	.	LowGQX	END=90400920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90400921	.	A	.	.	LowGQX	.	GT	./.
chr1	90400922	.	C	.	.	LowGQX	END=90400940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90400941	.	T	.	.	LowGQX	.	GT	./.
chr1	90400942	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90400943	.	T	.	.	LowGQX	.	GT	./.
chr1	90400944	.	A	.	.	LowGQX	END=90400945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90400946	.	A	.	.	LowGQX	.	GT	./.
chr1	90400947	.	T	.	.	LowGQX	END=90400949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90400950	.	A	.	.	LowGQX	.	GT	./.
chr1	90400951	.	T	.	.	LowGQX	END=90400973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90400974	.	G	.	.	LowGQX	.	GT	./.
chr1	90400975	.	G	.	.	LowGQX	END=90400979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90400980	.	A	.	.	LowGQX	END=90400981	GT	./.
chr1	90400982	.	C	.	.	LowGQX	END=90401006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90401007	.	G	.	.	LowGQX	.	GT	./.
chr1	90401008	.	T	.	.	LowGQX	END=90401026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90401027	.	C	.	.	LowGQX	.	GT	./.
chr1	90401028	.	A	.	.	LowGQX	END=90401032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90401033	.	G	.	.	LowGQX	.	GT	./.
chr1	90401034	.	C	.	.	LowGQX	END=90401044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90401045	.	G	.	.	LowGQX	.	GT	./.
chr1	90401046	.	G	.	.	LowGQX	END=90401048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90401049	.	A	.	.	LowGQX	END=90401085	GT	./.
chr1	90401086	.	G	.	.	LowGQX	END=90401096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90401097	.	A	.	.	LowGQX	.	GT	./.
chr1	90401098	.	A	.	.	LowGQX	END=90401102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90401103	.	A	.	.	LowGQX	END=90401104	GT	./.
chr1	90401105	.	C	.	.	LowGQX	END=90401109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90401110	.	T	.	.	LowGQX	END=90401111	GT	./.
chr1	90401112	.	G	.	.	LowGQX	END=90401131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90401132	.	T	.	.	LowGQX	.	GT	./.
chr1	90401133	.	G	.	.	LowGQX	END=90401139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90401140	.	T	.	.	LowGQX	.	GT	./.
chr1	90401141	.	G	.	.	LowGQX	END=90401151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90401152	.	T	.	.	LowGQX	.	GT	./.
chr1	90401153	.	C	.	.	LowGQX	END=90401155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90401156	.	A	.	.	LowGQX	.	GT	./.
chr1	90401157	.	G	.	.	LowGQX	END=90401158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90401159	.	G	.	.	LowGQX	END=90401160	GT	./.
chr1	90401161	.	C	.	.	LowGQX	END=90401164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90401165	.	G	.	.	LowGQX	.	GT	./.
chr1	90401166	.	A	.	.	LowGQX	END=90401206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	90457679	.	A	.	.	LowGQX	END=90457778	GT	./.
chr1	90460715	.	C	.	.	LowGQX	END=90460874	GT	./.
chr1	90463641	.	T	.	.	LowGQX	END=90463740	GT	./.
chr1	90470556	.	T	.	.	LowGQX	END=90470655	GT	./.
chr1	90470690	.	A	.	.	LowGQX	END=90470809	GT	./.
chr1	90472902	.	A	.	.	LowGQX	END=90473311	GT	./.
chr1	90475645	.	A	.	.	LowGQX	END=90475847	GT	./.
chr1	90478683	.	A	.	.	LowGQX	END=90478798	GT	./.
chr1	90482874	.	A	.	.	LowGQX	END=90483053	GT	./.
chr1	90484192	.	T	.	.	LowGQX	END=90484345	GT	./.
chr1	90486349	.	A	.	.	LowGQX	END=90486483	GT	./.
chr1	90487807	.	A	.	.	LowGQX	END=90487906	GT	./.
chr1	90492911	.	A	.	.	LowGQX	END=90493267	GT	./.
chr1	91177867	.	T	.	.	LowGQX	END=91178183	GT	./.
chr1	91180086	.	A	.	.	LowGQX	END=91180315	GT	./.
chr1	91182126	.	A	.	.	LowGQX	END=91182217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182218	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	91182219	.	C	.	.	LowGQX	END=91182223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182224	.	C	.	.	LowGQX	.	GT	./.
chr1	91182225	.	G	.	.	LowGQX	END=91182242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182243	.	G	.	.	LowGQX	END=91182244	GT	./.
chr1	91182245	.	T	.	.	LowGQX	END=91182258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182259	.	G	.	.	LowGQX	.	GT	./.
chr1	91182260	.	A	.	.	LowGQX	END=91182270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182271	.	C	.	.	LowGQX	.	GT	./.
chr1	91182272	.	T	.	.	LowGQX	END=91182355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182356	.	A	.	.	LowGQX	.	GT	./.
chr1	91182357	.	G	.	.	LowGQX	END=91182364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182365	.	A	.	.	LowGQX	.	GT	./.
chr1	91182366	.	G	.	.	LowGQX	END=91182368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182369	.	C	.	.	LowGQX	.	GT	./.
chr1	91182370	.	A	.	.	LowGQX	END=91182376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182377	.	G	.	.	LowGQX	.	GT	./.
chr1	91182378	.	G	.	.	LowGQX	END=91182383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182384	.	C	.	.	LowGQX	.	GT	./.
chr1	91182385	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182386	.	G	.	.	LowGQX	.	GT	./.
chr1	91182387	.	C	.	.	LowGQX	END=91182389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182390	.	C	.	.	LowGQX	.	GT	./.
chr1	91182391	.	G	.	.	LowGQX	END=91182396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182397	.	T	.	.	LowGQX	.	GT	./.
chr1	91182398	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182399	.	C	.	.	LowGQX	END=91182400	GT	./.
chr1	91182401	.	G	.	.	LowGQX	END=91182408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182409	.	A	.	.	LowGQX	.	GT	./.
chr1	91182410	.	G	.	.	LowGQX	END=91182416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182417	.	C	.	.	LowGQX	.	GT	./.
chr1	91182418	.	T	.	.	LowGQX	END=91182419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182420	.	C	.	.	LowGQX	END=91182421	GT	./.
chr1	91182422	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182423	.	T	.	.	LowGQX	END=91182424	GT	./.
chr1	91182425	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182426	.	G	.	.	LowGQX	END=91182635	GT	./.
chr1	91182636	.	C	.	.	LowGQX	END=91182637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182638	.	T	.	.	LowGQX	END=91182639	GT	./.
chr1	91182640	.	G	.	.	LowGQX	END=91182642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182643	.	T	.	.	LowGQX	.	GT	./.
chr1	91182644	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182645	.	A	.	.	LowGQX	.	GT	./.
chr1	91182646	.	C	.	.	LowGQX	END=91182648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182649	.	A	.	.	LowGQX	END=91182650	GT	./.
chr1	91182651	.	C	.	.	LowGQX	END=91182653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182654	.	G	.	.	LowGQX	.	GT	./.
chr1	91182655	.	C	.	.	LowGQX	END=91182659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182660	.	A	.	.	LowGQX	END=91182661	GT	./.
chr1	91182662	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182663	.	T	.	.	LowGQX	.	GT	./.
chr1	91182664	.	C	.	.	LowGQX	END=91182666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182667	.	T	.	.	LowGQX	END=91182668	GT	./.
chr1	91182669	.	C	.	.	LowGQX	END=91182673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182674	.	T	.	.	LowGQX	.	GT	./.
chr1	91182675	.	G	.	.	LowGQX	END=91182676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182677	.	C	.	.	LowGQX	END=91182678	GT	./.
chr1	91182679	.	G	.	.	LowGQX	END=91182682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182683	.	T	.	.	LowGQX	.	GT	./.
chr1	91182684	.	G	.	.	LowGQX	END=91182688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182689	.	A	.	.	LowGQX	.	GT	./.
chr1	91182690	.	A	.	.	LowGQX	END=91182692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182693	.	G	.	.	LowGQX	.	GT	./.
chr1	91182694	.	G	.	.	LowGQX	END=91182706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182707	.	T	.	.	LowGQX	.	GT	./.
chr1	91182708	.	C	.	.	LowGQX	END=91182709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182710	.	T	.	.	LowGQX	.	GT	./.
chr1	91182711	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182712	.	T	.	.	LowGQX	.	GT	./.
chr1	91182713	.	C	.	.	LowGQX	END=91182715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182716	.	T	.	.	LowGQX	.	GT	./.
chr1	91182717	.	T	.	.	LowGQX	END=91182721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182722	.	A	.	.	LowGQX	END=91182723	GT	./.
chr1	91182724	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182725	.	T	.	.	LowGQX	.	GT	./.
chr1	91182726	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182727	.	G	.	.	LowGQX	END=91182728	GT	./.
chr1	91182729	.	C	.	.	LowGQX	END=91182733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182734	.	T	.	.	LowGQX	END=91182735	GT	./.
chr1	91182736	.	G	.	.	LowGQX	END=91182740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182741	.	T	.	.	LowGQX	.	GT	./.
chr1	91182742	.	T	.	.	LowGQX	END=91182751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91182752	.	T	.	.	LowGQX	.	GT	./.
chr1	91182753	.	T	.	.	LowGQX	END=91182755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91382304	.	A	.	.	PASS	END=91382359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	91382360	.	A	.	.	PASS	END=91382433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	91382434	.	T	.	.	PASS	END=91382466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	91382467	.	G	.	.	PASS	END=91382490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	91382491	.	T	.	.	PASS	END=91382505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	91382506	.	T	.	.	PASS	END=91382513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	91382514	.	A	.	.	PASS	END=91382522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	91382523	.	T	.	.	PASS	END=91382524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	91382525	.	C	.	.	PASS	END=91382530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	91382531	.	A	.	.	LowGQX	END=91382555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	91382556	.	A	.	.	LowGQX	END=91382585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	91382586	.	T	.	.	LowGQX	END=91382587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	91382588	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	91382589	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	91382590	.	T	.	.	LowGQX	END=91382591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	91382592	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	91382593	.	T	.	.	LowGQX	END=91382598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	91383558	.	T	.	.	PASS	END=91383567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	91383568	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:66:60
chr1	91383569	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:33:60
chr1	91383570	.	A	.	.	PASS	END=91383581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	91383582	.	A	.	.	PASS	END=91383588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	91383589	.	T	G	727.70	PASS	BaseQRankSum=-0.041;DP=41;Dels=0.00;FS=6.346;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-0.756;QD=17.75;ReadPosRankSum=-1.581;SB=-111.29	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:14,27:41:99:758,0,291:60:99:0.659
chr1	91383590	.	T	.	.	PASS	END=91383620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	91383621	.	A	.	.	PASS	END=91383638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	91383639	.	C	.	.	PASS	END=91383762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	91402991	.	A	.	.	PASS	END=91402992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	91402993	.	T	.	.	PASS	END=91402994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	91402995	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:57:60
chr1	91402996	.	A	.	.	PASS	END=91402997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	91402998	.	C	.	.	PASS	END=91402999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	91403000	.	G	.	.	PASS	END=91403010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	91403011	.	G	.	.	PASS	END=91403014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	91403015	.	A	.	.	PASS	END=91403022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	91403023	.	G	.	.	PASS	END=91403043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	91403044	.	G	.	.	PASS	END=91403075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	91403076	.	A	.	.	PASS	END=91403091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	91403092	.	T	.	.	PASS	END=91403155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:246:99:60
chr1	91403156	.	T	.	.	PASS	END=91403264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:276:99:60
chr1	91403265	.	T	.	.	PASS	END=91403338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	91403339	.	C	.	.	PASS	END=91403358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	91403359	.	G	.	.	PASS	END=91403571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	91403572	.	A	.	.	PASS	END=91403602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	91403603	.	A	.	.	PASS	END=91403614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	91403615	.	T	.	.	PASS	END=91403635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	91403636	.	A	.	.	PASS	END=91403647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	91403648	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:30:60
chr1	91403649	.	T	.	.	PASS	END=91403658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	91403659	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:75:60
chr1	91403660	.	T	.	.	PASS	END=91403693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:89:60
chr1	91403694	.	T	.	.	PASS	END=91403698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	91403778	.	A	.	.	PASS	END=91403794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	91403795	.	C	.	.	PASS	END=91403800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	91403801	.	G	.	.	PASS	END=91403816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	91403817	.	T	.	.	PASS	END=91403821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	91403822	.	A	.	.	PASS	END=91403824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	91403825	.	T	.	.	PASS	END=91403828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	91403829	.	C	.	.	PASS	END=91403832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	91403833	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:3:60
chr1	91403834	.	C	.	.	PASS	END=91403848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	91403849	.	G	.	.	PASS	END=91403860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	91403861	.	C	.	.	PASS	END=91403878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	91403879	.	T	.	.	PASS	END=91403887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	91403888	.	T	.	.	PASS	END=91403914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	91403915	.	A	.	.	PASS	END=91403918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	91403919	.	C	.	.	PASS	END=91403927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	91403928	.	C	.	.	PASS	END=91403934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	91403935	.	G	.	.	PASS	END=91403959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	91403960	.	C	.	.	PASS	END=91403978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	91403979	.	A	.	.	PASS	END=91404009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	91404010	.	G	.	.	PASS	END=91404095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	91404096	.	A	.	.	PASS	END=91404181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	91404182	.	T	.	.	PASS	END=91404271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	91404272	.	C	.	.	PASS	END=91404291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	91404292	.	G	.	.	PASS	END=91404296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	91404297	.	G	.	.	PASS	END=91404347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr1	91404348	.	T	.	.	PASS	END=91404446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:315:99:60
chr1	91404447	.	C	.	.	PASS	END=91404495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:266:99:60
chr1	91404496	.	A	.	.	PASS	END=91404633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:362:99:60
chr1	91404634	.	C	.	.	PASS	END=91404646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:334:99:60
chr1	91404647	.	T	.	.	PASS	END=91404769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:268:99:60
chr1	91404770	.	C	.	.	PASS	END=91404854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:312:99:60
chr1	91404855	.	T	.	.	PASS	END=91405086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:391:99:60
chr1	91405087	.	C	.	.	PASS	END=91405328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:469:99:60
chr1	91405329	.	C	.	.	PASS	END=91405417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:391:99:60
chr1	91405418	.	C	.	.	PASS	END=91405488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:504:99:60
chr1	91405489	.	T	.	.	PASS	END=91405574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:591:99:60
chr1	91405575	.	T	.	.	PASS	END=91405686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:464:99:60
chr1	91405687	.	T	.	.	PASS	END=91405947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:340:99:60
chr1	91405948	.	T	.	.	PASS	END=91406096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:271:99:60
chr1	91406097	.	T	.	.	PASS	END=91406329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:324:99:60
chr1	91406330	.	A	.	.	PASS	END=91406381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:261:99:60
chr1	91406382	.	A	.	.	PASS	END=91406435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	91406436	.	C	.	.	PASS	END=91406507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	91406508	.	T	.	.	PASS	END=91406570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	91406571	.	C	.	.	PASS	END=91406643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	91406644	.	T	.	.	PASS	END=91406733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	91406734	.	T	.	.	PASS	END=91406759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr1	91406760	.	C	.	.	PASS	END=91406771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	91406772	.	T	.	.	PASS	END=91406809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	91406810	.	T	.	.	PASS	END=91406815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	91406816	.	T	.	.	PASS	END=91406817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	91406818	.	T	.	.	PASS	END=91406839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	91406840	.	T	.	.	PASS	END=91406846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	91406847	.	G	.	.	PASS	END=91406859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	91406860	.	A	.	.	PASS	END=91406864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	91406865	.	G	.	.	LowGQX	END=91406866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	91406867	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	91406868	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	91406869	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	91406870	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	91406871	.	A	.	.	PASS	END=91406874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	91406875	.	T	.	.	LowGQX	END=91406876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	91406877	.	G	.	.	PASS	END=91406887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	91406888	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	91406889	.	T	.	.	PASS	END=91406917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	91447816	.	G	.	.	PASS	END=91447842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	91447843	.	T	.	.	PASS	END=91447933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	91447934	.	G	.	.	PASS	END=91447954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	91447955	.	G	.	.	PASS	END=91447961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	91726832	.	A	.	.	LowGQX	END=91726931	GT	./.
chr1	91727794	.	T	.	.	LowGQX	END=91727983	GT	./.
chr1	91728036	.	A	.	.	LowGQX	END=91728151	GT	./.
chr1	91731502	.	A	.	.	LowGQX	END=91731720	GT	./.
chr1	91733300	.	A	.	.	LowGQX	END=91733459	GT	./.
chr1	91739267	.	A	.	.	LowGQX	END=91739290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91739291	.	T	.	.	LowGQX	.	GT	./.
chr1	91739292	.	T	.	.	LowGQX	END=91739340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91739341	.	T	.	.	LowGQX	END=91739374	GT	./.
chr1	91740277	.	A	.	.	LowGQX	END=91740376	GT	./.
chr1	91742133	.	A	.	.	LowGQX	END=91742302	GT	./.
chr1	91742530	.	G	.	.	LowGQX	END=91742629	GT	./.
chr1	91778904	.	A	.	.	LowGQX	END=91779054	GT	./.
chr1	91779512	.	A	.	.	LowGQX	END=91779619	GT	./.
chr1	91781370	.	A	.	.	LowGQX	END=91781531	GT	./.
chr1	91781650	.	A	.	.	LowGQX	END=91781749	GT	./.
chr1	91781941	.	T	.	.	LowGQX	END=91782040	GT	./.
chr1	91784633	.	A	.	.	LowGQX	END=91784768	GT	./.
chr1	91784848	.	A	.	.	LowGQX	END=91784949	GT	./.
chr1	91788481	.	C	.	.	LowGQX	END=91788634	GT	./.
chr1	91788648	.	A	.	.	LowGQX	END=91788807	GT	./.
chr1	91790228	.	T	.	.	LowGQX	END=91790379	GT	./.
chr1	91804492	.	C	.	.	LowGQX	END=91804591	GT	./.
chr1	91808925	.	A	.	.	LowGQX	END=91809077	GT	./.
chr1	91812960	.	A	.	.	LowGQX	END=91813059	GT	./.
chr1	91816233	.	G	.	.	LowGQX	END=91816430	GT	./.
chr1	91817044	.	A	.	.	LowGQX	END=91817203	GT	./.
chr1	91818061	.	A	.	.	LowGQX	END=91818200	GT	./.
chr1	91818201	.	G	.	.	LowGQX	END=91818210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91818606	.	A	.	.	LowGQX	END=91818711	GT	./.
chr1	91818785	.	G	.	.	LowGQX	END=91818884	GT	./.
chr1	91840910	.	T	.	.	LowGQX	END=91841009	GT	./.
chr1	91841082	.	A	.	.	LowGQX	END=91841286	GT	./.
chr1	91843541	.	G	.	.	LowGQX	END=91843742	GT	./.
chr1	91843949	.	G	.	.	LowGQX	END=91844048	GT	./.
chr1	91844618	.	A	.	.	LowGQX	END=91844817	GT	./.
chr1	91845659	.	A	.	.	LowGQX	END=91845795	GT	./.
chr1	91846397	.	C	.	.	LowGQX	END=91846428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91846429	.	T	.	.	LowGQX	.	GT	./.
chr1	91846430	.	G	.	.	LowGQX	END=91846497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91846498	.	T	.	.	LowGQX	END=91846554	GT	./.
chr1	91850718	.	G	.	.	LowGQX	END=91850871	GT	./.
chr1	91851130	.	A	.	.	LowGQX	END=91851393	GT	./.
chr1	91859648	.	A	.	.	LowGQX	END=91859961	GT	./.
chr1	91861848	.	A	.	.	LowGQX	END=91861964	GT	./.
chr1	91866507	.	C	.	.	LowGQX	END=91866726	GT	./.
chr1	91870341	.	G	.	.	LowGQX	.	GT	./.
chr1	91870342	.	C	.	.	LowGQX	END=91870357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91870358	.	C	.	.	LowGQX	.	GT	./.
chr1	91870359	.	C	.	.	LowGQX	END=91870379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91870380	.	G	.	.	LowGQX	END=91870381	GT	./.
chr1	91870382	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91870383	.	G	.	.	LowGQX	.	GT	./.
chr1	91870384	.	A	.	.	LowGQX	END=91870410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91870411	.	A	.	.	LowGQX	END=91870440	GT	./.
chr1	91967272	.	T	.	.	LowGQX	END=91967292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91967293	.	T	.	.	LowGQX	END=91967390	GT	./.
chr1	91973349	.	T	.	.	LowGQX	END=91973502	GT	./.
chr1	91973817	.	A	.	.	LowGQX	END=91973996	GT	./.
chr1	91977151	.	T	.	.	LowGQX	END=91977169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91977170	.	A	.	.	LowGQX	END=91977250	GT	./.
chr1	91977336	.	A	.	.	LowGQX	END=91977482	GT	./.
chr1	91978613	.	A	.	.	LowGQX	END=91978638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91978639	.	G	.	.	LowGQX	END=91978842	GT	./.
chr1	91978843	.	T	.	.	LowGQX	END=91978856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91978857	.	A	.	.	LowGQX	.	GT	./.
chr1	91978858	.	C	.	.	LowGQX	END=91978866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91979503	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91979504	.	G	.	.	LowGQX	.	GT	./.
chr1	91979505	.	G	.	.	LowGQX	END=91979510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91979511	.	T	.	.	LowGQX	.	GT	./.
chr1	91979512	.	C	.	.	LowGQX	END=91979520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91979521	.	T	.	.	LowGQX	.	GT	./.
chr1	91979522	.	T	.	.	LowGQX	END=91979526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91979527	.	T	.	.	LowGQX	.	GT	./.
chr1	91979528	.	C	.	.	LowGQX	END=91979534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91979535	.	T	.	.	LowGQX	.	GT	./.
chr1	91979536	.	C	.	.	LowGQX	END=91979572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	91979573	.	C	.	.	LowGQX	END=91979602	GT	./.
chr1	91980374	.	A	.	.	LowGQX	END=91980556	GT	./.
chr1	91981343	.	A	.	.	LowGQX	END=91981442	GT	./.
chr1	91985685	.	A	.	.	LowGQX	END=91985838	GT	./.
chr1	91989596	.	A	.	.	LowGQX	END=91989994	GT	./.
chr1	92100557	.	A	.	.	LowGQX	END=92100656	GT	./.
chr1	92107922	.	G	.	.	LowGQX	END=92107923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	92107924	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	92107925	.	T	.	.	LowGQX	END=92107926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	92107927	.	C	.	.	PASS	END=92107928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	92107929	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:20:59
chr1	92107930	.	C	.	.	PASS	END=92107931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:59
chr1	92107932	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:12:59
chr1	92107933	.	T	.	.	PASS	END=92107941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:59
chr1	92107942	.	C	.	.	PASS	END=92107945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:59
chr1	92107946	.	T	.	.	PASS	END=92107950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:59
chr1	92107951	.	C	.	.	PASS	END=92107952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:59
chr1	92107953	.	A	.	.	PASS	END=92107961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:59
chr1	92107962	.	G	.	.	PASS	END=92107965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:59
chr1	92107966	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:30:59
chr1	92107967	.	G	.	.	PASS	END=92107983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:59
chr1	92107984	.	G	.	.	PASS	END=92108020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	92108021	.	G	.	.	PASS	END=92108055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	92108056	.	G	.	.	PASS	END=92108073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	92108074	.	G	.	.	PASS	END=92108097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	92108098	.	G	.	.	PASS	END=92108120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	92108121	.	C	.	.	PASS	END=92108200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	92108331	.	G	.	.	PASS	END=92108399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	92108400	.	T	.	.	PASS	END=92108504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	92108505	.	C	.	.	PASS	END=92108578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	92108579	.	C	.	.	PASS	END=92108632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	92108633	.	T	.	.	PASS	END=92108748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	92108749	.	C	.	.	PASS	END=92108799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	92108800	.	T	.	.	PASS	END=92108812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	92108813	.	C	.	.	PASS	END=92108859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:267:99:60
chr1	92108860	.	T	.	.	PASS	END=92108898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:315:99:60
chr1	92108899	.	C	T	10005.46	PASS	BaseQRankSum=0.651;DP=315;Dels=0.00;FS=3.758;HRun=1;HaplotypeScore=20.9802;MQ=60;MQ0=0;MQRankSum=-0.121;QD=31.76;ReadPosRankSum=-1.423;SB=-4801.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,313:315:99:10005,722,0:60:99:0.997
chr1	92108900	.	T	.	.	PASS	END=92108963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:266:99:60
chr1	92108964	.	T	.	.	PASS	END=92109047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	92109048	.	A	.	.	PASS	END=92109174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:300:99:60
chr1	92109175	.	C	.	.	PASS	END=92109335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:386:99:60
chr1	92145899	.	A	.	.	PASS	END=92145926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	92145927	.	A	.	.	PASS	END=92145969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	92145970	.	C	.	.	PASS	END=92145993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	92145994	.	C	.	.	PASS	END=92146012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	92146013	.	A	.	.	PASS	END=92146064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:247:99:60
chr1	92146065	.	G	.	.	PASS	END=92146265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:324:99:60
chr1	92146266	.	A	.	.	PASS	END=92146306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:60
chr1	92146307	.	A	.	.	PASS	END=92146345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	92146346	.	C	.	.	PASS	END=92146356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	92146357	.	A	.	.	PASS	END=92146491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	92146492	.	A	.	.	PASS	END=92146516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	92146517	.	G	.	.	PASS	END=92146531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	92146532	.	G	.	.	PASS	END=92146569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr1	92146570	.	T	.	.	PASS	END=92146674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:288:99:60
chr1	92146675	.	A	.	.	PASS	END=92146720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	92146721	.	A	.	.	PASS	END=92146767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	92146768	.	A	.	.	PASS	END=92146783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	92146784	.	C	.	.	PASS	END=92146866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	92146867	.	G	.	.	PASS	END=92146916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	92146917	.	C	A	2963.87	PASS	DP=92;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=10.5170;MQ=60;MQ0=0;QD=32.22;SB=-1297.49	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,91:92:99:2997,229,0:60:99:1.000
chr1	92146918	.	A	.	.	PASS	END=92146954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	92146955	.	C	.	.	PASS	END=92147057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	92147058	.	T	.	.	PASS	END=92147106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	92147107	.	A	.	.	PASS	END=92147174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	92147175	.	G	.	.	PASS	END=92147304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	92147305	.	C	.	.	PASS	END=92147385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	92147386	.	G	.	.	PASS	END=92147425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	92147426	.	A	.	.	PASS	END=92147619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	92147620	.	T	.	.	PASS	END=92147708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	92147709	.	A	.	.	PASS	END=92147858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:267:99:60
chr1	92147859	.	G	.	.	PASS	END=92147889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	92147890	.	A	.	.	PASS	END=92147922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	92147923	.	A	.	.	PASS	END=92147936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	92147937	.	G	.	258.54	PASS	DP=136;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:108:136:99:60:99
chr1	92147938	.	C	.	.	PASS	END=92147960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:59
chr1	92147961	.	C	.	204.48	PASS	DP=144;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:98:126:99:59:99
chr1	92147962	.	T	.	293.29	PASS	DP=198;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:157:166:99:59:99
chr1	92147963	.	T	.	.	PASS	END=92148006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:59
chr1	92148007	.	T	.	.	PASS	END=92148073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:245:99:60
chr1	92148074	.	T	.	.	PASS	END=92148220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:312:99:60
chr1	92148221	.	T	.	.	PASS	END=92148226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:391:99:60
chr1	92148227	.	C	G	12549.88	PASS	BaseQRankSum=1.553;DP=390;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=25.8164;MQ=60;MQ0=0;MQRankSum=1.232;QD=32.18;ReadPosRankSum=-1.259;SB=-3897.24	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,387:390:99:12550,966,0:60:99:0.997
chr1	92148228	.	A	.	.	PASS	END=92148286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:373:99:60
chr1	92148287	.	A	.	.	PASS	END=92148322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:377:99:60
chr1	92148323	.	A	.	.	PASS	END=92148427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:289:99:60
chr1	92148428	.	T	.	.	PASS	END=92148492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	92148493	.	A	.	.	PASS	END=92148569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:257:99:60
chr1	92148570	.	A	.	.	PASS	END=92148710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr1	92148711	.	G	.	.	PASS	END=92148746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:315:99:60
chr1	92148747	.	G	.	.	PASS	END=92148809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:399:99:60
chr1	92148810	.	C	.	.	PASS	END=92148883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:422:99:60
chr1	92148884	.	C	.	.	PASS	END=92148927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:317:99:60
chr1	92148928	.	T	.	.	PASS	END=92149036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:266:99:60
chr1	92149037	.	T	.	.	PASS	END=92149090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	92149091	.	A	.	.	PASS	END=92149112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	92149113	.	T	.	.	PASS	END=92149129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	92149130	.	T	.	.	PASS	END=92149144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	92149145	.	A	.	.	PASS	END=92149204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	92149205	.	T	.	.	PASS	END=92149287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	92149288	.	G	.	.	PASS	END=92149292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	92149293	.	G	.	.	PASS	END=92149318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	92149319	.	A	.	.	PASS	END=92149405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	92149406	.	C	.	.	PASS	END=92149443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	92149444	.	G	.	.	PASS	END=92149462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	92149463	.	T	.	.	PASS	END=92149465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	92161178	.	G	.	.	PASS	END=92161198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	92161199	.	C	.	.	PASS	END=92161230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	92161231	.	G	.	.	PASS	END=92161259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	92161260	.	C	.	.	PASS	END=92161313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	92161314	.	G	.	.	PASS	END=92161365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	92161366	.	C	.	.	PASS	END=92161384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	92161385	.	C	.	.	PASS	END=92161387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	92163587	.	A	.	.	PASS	END=92163718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	92163719	.	T	.	.	PASS	END=92163726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	92163727	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:41:60
chr1	92163728	.	C	.	.	PASS	END=92163737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	92163738	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:60:60
chr1	92174169	.	T	.	.	PASS	END=92174179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	92174180	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:66:60
chr1	92174181	.	C	.	.	PASS	END=92174182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	92174183	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:63:60
chr1	92174184	.	A	.	.	PASS	END=92174192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	92174193	.	G	.	.	PASS	END=92174208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	92174209	.	C	.	.	PASS	END=92174236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	92174237	.	T	.	.	PASS	END=92174259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	92174260	.	A	G	3074.53	PASS	DP=112;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=6.6709;MQ=60;MQ0=0;QD=27.45;SB=-1677.80	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,112:112:99:3108,229,0:60:99:1.000
chr1	92174261	.	G	.	.	PASS	END=92174332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	92174333	.	G	.	.	PASS	END=92174347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:97:60
chr1	92174348	.	C	.	.	PASS	END=92174369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	92174370	.	C	.	.	PASS	END=92174380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	92174381	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:69:60
chr1	92174382	.	A	.	.	PASS	END=92174391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	92177749	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92177750	.	T	.	.	LowGQX	.	GT	./.
chr1	92177751	.	C	.	.	LowGQX	END=92177763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	92177764	.	C	.	.	LowGQX	END=92177792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	92177793	.	C	.	.	LowGQX	END=92177798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	92177799	.	C	.	.	LowGQX	END=92177806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	92177807	.	A	.	.	LowGQX	END=92177821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	92177822	.	T	.	48.05	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:18.06:60:18
chr1	92177823	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	92177824	.	C	.	.	LowGQX	END=92177828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	92177829	.	T	.	.	PASS	END=92177830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	92177831	.	T	.	.	PASS	END=92177845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	92177846	.	A	.	.	PASS	END=92177853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	92177854	.	C	.	.	PASS	END=92177870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	92177871	.	A	.	.	PASS	END=92177875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	92177876	.	T	.	.	PASS	END=92177909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	92177910	.	T	.	.	PASS	END=92177940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	92177941	.	G	.	.	PASS	END=92178005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	92178006	.	T	.	.	PASS	END=92178057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	92178058	.	G	.	.	PASS	END=92178087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr1	92178088	.	A	.	.	PASS	END=92178098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	92178099	.	C	.	.	PASS	END=92178150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr1	92181742	.	A	.	.	PASS	END=92181769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	92181770	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:75:60
chr1	92181771	.	A	.	.	PASS	END=92181802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr1	92181803	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:69:60
chr1	92181804	.	C	.	.	PASS	END=92181833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:84:60
chr1	92181834	.	C	.	.	PASS	END=92181898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	92181899	.	G	.	.	PASS	END=92181968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:60
chr1	92181969	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:74:60
chr1	92181970	.	A	.	.	PASS	END=92181983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	92181984	.	C	.	.	PASS	END=92181998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	92181999	.	T	.	.	PASS	END=92182002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	92182074	.	A	.	.	PASS	END=92182092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	92182093	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:51:60
chr1	92182094	.	C	.	.	PASS	END=92182106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	92182107	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr1	92182108	.	T	.	.	PASS	END=92182165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	92182166	.	C	.	.	PASS	END=92182224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	92182225	.	C	.	.	PASS	END=92182239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	92182240	.	C	.	.	PASS	END=92182254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	92182255	.	T	.	.	PASS	END=92182265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	92182266	.	C	.	.	PASS	END=92182316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	92184818	.	A	.	.	LowGQX	END=92184819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	92184820	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	92184821	.	C	.	.	LowGQX	END=92184822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	92184823	.	G	.	.	PASS	END=92184825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	92184826	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	92184827	.	G	.	.	PASS	END=92184832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	92184833	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	92184834	.	G	.	.	PASS	END=92184835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	92184836	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	92184837	.	A	.	.	PASS	END=92184845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	92184846	.	G	.	.	PASS	END=92184850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	92184851	.	G	.	.	PASS	END=92184860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	92184861	.	A	.	.	PASS	END=92184869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	92184870	.	G	.	.	PASS	END=92184875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	92184876	.	T	.	.	PASS	END=92184889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	92184890	.	A	.	.	PASS	END=92184912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	92184913	.	G	.	.	PASS	END=92184942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	92184943	.	A	.	.	PASS	END=92185028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	92185029	.	A	.	.	PASS	END=92185063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	92185064	.	C	.	.	PASS	END=92185072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	92185399	.	A	.	.	LowGQX	END=92185400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	92185401	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	92185402	.	T	.	.	LowGQX	END=92185404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	92185405	.	G	.	.	PASS	END=92185410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	92185411	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	92185412	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	92185413	.	G	.	.	LowGQX	END=92185414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	92185415	.	A	.	.	PASS	END=92185418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	92185419	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	92185420	.	C	.	.	PASS	END=92185423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	92185424	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	92185425	.	C	.	.	PASS	END=92185429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	92185430	.	C	.	.	PASS	END=92185436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	92185437	.	C	.	.	PASS	END=92185447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	92185448	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	92185449	.	C	.	.	PASS	END=92185477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	92185478	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:45:60
chr1	92185479	.	T	.	.	PASS	END=92185508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	92185509	.	G	.	.	PASS	END=92185517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	92185518	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:51:60
chr1	92185519	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:99:60
chr1	92185520	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:75:60
chr1	92185521	.	C	.	.	PASS	END=92185524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	92185525	.	C	.	.	PASS	END=92185544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	92185545	.	C	.	.	PASS	END=92185574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	92185575	.	G	.	.	PASS	END=92185613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	92185614	.	C	.	.	PASS	END=92185656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	92185657	.	C	T	1402.21	PASS	BaseQRankSum=2.515;DP=127;Dels=0.00;FS=1.559;HRun=0;HaplotypeScore=5.7240;MQ=60;MQ0=0;MQRankSum=0.046;QD=11.04;ReadPosRankSum=1.362;SB=-864.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:64,63:127:99:1432,0,1261:60:99:0.496
chr1	92185658	.	G	.	.	PASS	END=92185693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	92185694	.	G	.	.	PASS	END=92185718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	92185719	.	C	.	.	PASS	END=92185737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	92185738	.	C	.	.	PASS	END=92185752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	92185753	.	A	.	.	PASS	END=92185783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	92185784	.	T	.	.	PASS	END=92185802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	92185803	.	G	.	.	PASS	END=92185828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	92185829	.	C	.	.	PASS	END=92185838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	92187461	.	A	.	.	PASS	END=92187512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	92187513	.	A	.	.	PASS	END=92187550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	92187551	.	G	.	.	PASS	END=92187691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	92187692	.	T	.	.	PASS	END=92187706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	92187707	.	G	.	.	PASS	END=92187724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	92187725	.	C	.	.	PASS	END=92187752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	92193165	.	A	.	.	PASS	END=92193186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	92193187	.	A	.	.	PASS	END=92193227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	92193228	.	G	.	.	PASS	END=92193323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	92193324	.	A	.	.	PASS	END=92193337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	92193338	.	C	.	.	PASS	END=92193364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	92193365	.	T	.	.	PASS	END=92193396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	92193397	.	T	.	.	PASS	END=92193405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	92193406	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:18:60
chr1	92193407	.	A	.	.	PASS	END=92193414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	92195311	.	A	.	.	LowGQX	END=92195312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr1	92195313	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	92195314	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	92195315	.	T	.	.	LowGQX	END=92195318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	92195319	.	T	.	.	PASS	END=92195321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	92195322	.	T	.	.	LowGQX	END=92195323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	92195324	.	T	.	.	PASS	END=92195330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	92195331	.	T	.	.	PASS	END=92195338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	92195339	.	C	.	.	PASS	END=92195344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	92195345	.	C	.	.	PASS	END=92195354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	92195355	.	C	.	.	PASS	END=92195373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	92195374	.	G	.	.	PASS	END=92195399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	92195400	.	G	.	.	PASS	END=92195428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:96:60
chr1	92195429	.	A	.	.	PASS	END=92195455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	92195456	.	G	.	.	PASS	END=92195547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	92195548	.	C	.	.	PASS	END=92195580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	92195581	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:64:99:60
chr1	92200282	.	A	.	.	PASS	END=92200297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	92200298	.	A	.	.	PASS	END=92200363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	92200364	.	T	.	.	PASS	END=92200386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	92200387	.	T	.	.	PASS	END=92200499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	92200500	.	A	.	.	PASS	END=92200518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	92200519	.	A	.	.	PASS	END=92200542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	92200543	.	A	.	.	PASS	END=92200557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	92200558	.	C	.	.	PASS	END=92200567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	92224119	.	C	.	.	PASS	END=92224125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	92224126	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr1	92224127	.	T	.	.	PASS	END=92224144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	92224145	.	G	.	.	PASS	END=92224167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	92224168	.	A	.	.	PASS	END=92224226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	92224227	.	G	.	.	PASS	END=92224285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	92224286	.	T	.	.	PASS	END=92224318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	92224319	.	C	.	.	PASS	END=92224358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	92251725	.	A	.	.	LowGQX	END=92251727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92251728	.	T	.	.	LowGQX	.	GT	./.
chr1	92251729	.	G	.	.	LowGQX	END=92251748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92251749	.	C	.	.	LowGQX	END=92251781	GT	./.
chr1	92251782	.	G	.	.	LowGQX	END=92251824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92262793	.	C	.	.	PASS	END=92262804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	92262805	.	C	.	.	PASS	END=92262829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	92262830	.	A	.	.	PASS	END=92262837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	92262838	.	A	.	.	PASS	END=92262859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	92262860	.	C	.	.	PASS	END=92262873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	92262874	.	T	C	5795.27	PASS	DP=213;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=7.6178;MQ=60;MQ0=0;QD=27.21;SB=-3381.36	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,212:213:99:5795,430,0:60:99:1.000
chr1	92262875	.	G	.	.	PASS	END=92262992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	92262993	.	C	.	.	PASS	END=92263009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	92263010	.	A	.	.	PASS	END=92263019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	92263020	.	G	.	.	PASS	END=92263028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	92263029	.	C	.	.	PASS	END=92263051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	92263052	.	A	.	.	PASS	END=92263079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	92266474	.	C	.	.	PASS	END=92266485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	92266486	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:60
chr1	92266487	.	A	.	.	PASS	END=92266495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	92266496	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:45:60
chr1	92266497	.	T	.	.	PASS	END=92266514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	92266515	.	C	.	.	PASS	END=92266573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:59
chr1	92266574	.	A	.	.	PASS	END=92266597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:57
chr1	92266598	.	C	.	.	PASS	END=92266640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:56
chr1	92266640	.	CA	C	260.01	PASS	BaseQRankSum=2.098;DP=94;FS=13.263;HRun=17;HaplotypeScore=473.7141;MQ=56;MQ0=0;MQRankSum=2.629;QD=2.77;ReadPosRankSum=0.507;SB=-144.75	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:62,18:93:99:299,0,540:56:99:0.225
chr1	92266641	.	A	.	198.54	PASS	DP=113;MQ=57;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:83:83:99:57:99
chr1	92266642	.	A	.	.	PASS	END=92266657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:57
chr1	92266658	.	G	.	.	PASS	END=92266673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:59
chr1	92326977	.	A	.	.	PASS	END=92327016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	92327017	.	A	.	.	PASS	END=92327105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	92327106	.	T	.	.	PASS	END=92327150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	92327151	.	T	.	.	PASS	END=92327172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	92327173	.	A	.	.	PASS	END=92327176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	92327177	.	T	.	.	PASS	END=92327201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:60
chr1	92351434	.	C	.	.	PASS	END=92351447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	92351448	.	T	.	.	PASS	END=92351561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	92351562	.	A	.	.	PASS	END=92351654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	92351655	.	C	.	.	PASS	END=92351722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	92351723	.	G	.	.	PASS	END=92351775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	92351776	.	G	.	.	PASS	END=92351805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	92351806	.	C	.	.	PASS	END=92351836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	92428310	.	G	.	.	LowGQX	END=92428505	GT	./.
chr1	92430182	.	A	.	.	LowGQX	END=92430183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92430184	.	G	.	.	LowGQX	.	GT	./.
chr1	92430185	.	A	.	.	LowGQX	END=92430196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92430197	.	T	.	.	LowGQX	.	GT	./.
chr1	92430198	.	T	.	.	LowGQX	END=92430200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92430201	.	A	.	.	LowGQX	.	GT	./.
chr1	92430202	.	A	.	.	LowGQX	END=92430204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92430205	.	A	.	.	LowGQX	END=92430206	GT	./.
chr1	92430207	.	C	.	.	LowGQX	END=92430216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92430217	.	T	.	.	LowGQX	.	GT	./.
chr1	92430218	.	T	.	.	LowGQX	END=92430223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92430224	.	C	.	.	LowGQX	.	GT	./.
chr1	92430225	.	A	.	.	LowGQX	END=92430233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92430234	.	G	.	.	LowGQX	.	GT	./.
chr1	92430235	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92430236	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	92430237	.	C	.	.	LowGQX	.	GT	./.
chr1	92430238	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92430239	.	T	.	.	LowGQX	.	GT	./.
chr1	92430240	.	G	.	.	LowGQX	END=92430261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92430262	.	G	.	.	LowGQX	.	GT	./.
chr1	92430263	.	C	.	.	LowGQX	END=92430280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92430281	.	A	.	.	LowGQX	.	GT	./.
chr1	92430282	.	C	.	.	LowGQX	END=92430298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92430299	.	C	.	.	LowGQX	.	GT	./.
chr1	92430300	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92430301	.	A	.	.	LowGQX	.	GT	./.
chr1	92430302	.	A	.	.	LowGQX	END=92430323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92433701	.	A	.	.	LowGQX	END=92433829	GT	./.
chr1	92441821	.	A	.	.	LowGQX	END=92441824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441825	.	A	.	.	LowGQX	.	GT	./.
chr1	92441826	.	C	.	.	LowGQX	END=92441828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441829	.	A	.	.	LowGQX	.	GT	./.
chr1	92441830	.	A	.	.	LowGQX	END=92441833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441834	.	A	.	.	LowGQX	.	GT	./.
chr1	92441835	.	A	.	.	LowGQX	END=92441844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441845	.	T	.	.	LowGQX	.	GT	./.
chr1	92441846	.	T	.	.	LowGQX	END=92441853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441854	.	T	.	.	LowGQX	.	GT	./.
chr1	92441855	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441856	.	A	.	.	LowGQX	.	GT	./.
chr1	92441857	.	A	.	.	LowGQX	END=92441861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441862	.	A	.	.	LowGQX	END=92441863	GT	./.
chr1	92441864	.	T	.	.	LowGQX	END=92441865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441866	.	A	.	.	LowGQX	.	GT	./.
chr1	92441867	.	T	.	.	LowGQX	END=92441868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441869	.	A	.	.	LowGQX	.	GT	./.
chr1	92441870	.	C	.	.	LowGQX	END=92441875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441876	.	G	.	.	LowGQX	.	GT	./.
chr1	92441877	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441878	.	A	.	.	LowGQX	.	GT	./.
chr1	92441879	.	A	.	.	LowGQX	END=92441890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441891	.	T	.	.	LowGQX	.	GT	./.
chr1	92441892	.	T	.	.	LowGQX	END=92441904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441905	.	A	.	.	LowGQX	.	GT	./.
chr1	92441906	.	A	.	.	LowGQX	END=92441917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441918	.	T	.	.	LowGQX	.	GT	./.
chr1	92441919	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441920	.	T	.	.	LowGQX	.	GT	./.
chr1	92441921	.	C	.	.	LowGQX	END=92441927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441928	.	C	.	.	LowGQX	.	GT	./.
chr1	92441929	.	A	.	.	LowGQX	END=92441933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441934	.	T	.	.	LowGQX	.	GT	./.
chr1	92441935	.	T	.	.	LowGQX	END=92441945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441946	.	A	.	.	LowGQX	.	GT	./.
chr1	92441947	.	C	.	.	LowGQX	END=92441958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441959	.	A	.	.	LowGQX	.	GT	./.
chr1	92441960	.	G	.	.	LowGQX	END=92441961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441962	.	T	.	.	LowGQX	.	GT	./.
chr1	92441963	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92441964	.	C	.	.	LowGQX	END=92441997	GT	./.
chr1	92442598	.	A	.	.	LowGQX	END=92442817	GT	./.
chr1	92442818	.	T	.	.	LowGQX	END=92442907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92442908	.	C	.	.	LowGQX	END=92442952	GT	./.
chr1	92443723	.	A	.	.	LowGQX	END=92443855	GT	./.
chr1	92445114	.	T	.	.	LowGQX	END=92445316	GT	./.
chr1	92446198	.	A	.	.	LowGQX	END=92446374	GT	./.
chr1	92446444	.	A	.	.	LowGQX	END=92446737	GT	./.
chr1	92446823	.	A	.	.	LowGQX	END=92446940	GT	./.
chr1	92447173	.	A	.	.	LowGQX	END=92447276	GT	./.
chr1	92447277	.	A	.	.	LowGQX	END=92447279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92447280	.	T	.	.	LowGQX	END=92447282	GT	./.
chr1	92447283	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92447284	.	C	.	.	LowGQX	.	GT	./.
chr1	92447285	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92447286	.	C	.	.	LowGQX	END=92447287	GT	./.
chr1	92447288	.	T	.	.	LowGQX	END=92447290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92447291	.	G	.	.	LowGQX	END=92447292	GT	./.
chr1	92447293	.	C	.	.	LowGQX	END=92447297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92447298	.	G	.	.	LowGQX	END=92447299	GT	./.
chr1	92447300	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92447301	.	A	.	.	LowGQX	END=92447302	GT	./.
chr1	92447303	.	T	.	.	LowGQX	END=92447304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92447305	.	T	.	.	LowGQX	.	GT	./.
chr1	92447306	.	G	.	.	LowGQX	END=92447307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92447308	.	A	.	.	LowGQX	.	GT	./.
chr1	92447309	.	T	.	.	LowGQX	END=92447312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92447313	.	G	.	.	LowGQX	END=92447314	GT	./.
chr1	92456669	.	A	.	.	LowGQX	END=92456821	GT	./.
chr1	92457797	.	T	.	.	LowGQX	END=92457948	GT	./.
chr1	92459638	.	A	.	.	LowGQX	END=92459639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92459640	.	A	.	.	LowGQX	END=92459812	GT	./.
chr1	92459813	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92467604	.	A	.	.	LowGQX	END=92467708	GT	./.
chr1	92469969	.	A	.	.	LowGQX	END=92470178	GT	./.
chr1	92470674	.	A	.	.	LowGQX	END=92470858	GT	./.
chr1	92479691	.	A	.	.	LowGQX	END=92479847	GT	./.
chr1	92495635	.	C	.	.	LowGQX	END=92495733	GT	./.
chr1	92495734	.	C	.	.	LowGQX	END=92495856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92495857	.	T	.	.	LowGQX	.	GT	./.
chr1	92495858	.	G	.	.	LowGQX	END=92495869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92498055	.	C	.	.	LowGQX	END=92498154	GT	./.
chr1	92508378	.	A	.	.	LowGQX	END=92508539	GT	./.
chr1	92511056	.	T	.	.	LowGQX	END=92511266	GT	./.
chr1	92515822	.	G	.	.	LowGQX	END=92515840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92515841	.	T	.	.	LowGQX	.	GT	./.
chr1	92515842	.	G	.	.	LowGQX	END=92515847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92515848	.	G	.	.	LowGQX	.	GT	./.
chr1	92515849	.	G	.	.	LowGQX	END=92515855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92515856	.	A	.	.	LowGQX	END=92515979	GT	./.
chr1	92518035	.	A	.	.	LowGQX	END=92518217	GT	./.
chr1	92528610	.	A	.	.	LowGQX	END=92528619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92528620	.	C	.	.	LowGQX	END=92528621	GT	./.
chr1	92528622	.	C	.	.	LowGQX	END=92528635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92528636	.	G	.	.	LowGQX	.	GT	./.
chr1	92528637	.	G	.	.	LowGQX	END=92528639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92528640	.	A	.	.	LowGQX	.	GT	./.
chr1	92528641	.	C	.	.	LowGQX	END=92528645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92528646	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	92528647	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92528648	.	A	.	.	LowGQX	.	GT	./.
chr1	92528649	.	A	.	.	LowGQX	END=92528651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92528652	.	C	.	.	LowGQX	.	GT	./.
chr1	92528653	.	T	.	.	LowGQX	END=92528665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92528666	.	A	.	.	LowGQX	.	GT	./.
chr1	92528667	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92528668	.	A	.	.	LowGQX	END=92528845	GT	./.
chr1	92546106	.	A	.	.	LowGQX	END=92546316	GT	./.
chr1	92554253	.	A	.	.	LowGQX	END=92554454	GT	./.
chr1	92568028	.	A	.	.	LowGQX	END=92568228	GT	./.
chr1	92573439	.	A	.	.	LowGQX	END=92573608	GT	./.
chr1	92595239	.	T	.	.	LowGQX	END=92595338	GT	./.
chr1	92604875	.	A	.	.	LowGQX	END=92605072	GT	./.
chr1	92606670	.	A	.	.	LowGQX	END=92606829	GT	./.
chr1	92612732	.	T	.	.	LowGQX	END=92612831	GT	./.
chr1	92613239	.	A	.	.	LowGQX	END=92613360	GT	./.
chr1	92632541	.	G	.	.	LowGQX	END=92632697	GT	./.
chr1	92633404	.	G	.	.	LowGQX	END=92633542	GT	./.
chr1	92634422	.	G	.	.	LowGQX	END=92634458	GT	./.
chr1	92634459	.	C	.	.	LowGQX	END=92634527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92634528	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	92634529	.	A	.	.	LowGQX	END=92634548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92634549	.	G	.	.	LowGQX	.	GT	./.
chr1	92634550	.	C	.	.	LowGQX	END=92634552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92636877	.	A	.	.	LowGQX	END=92637036	GT	./.
chr1	92642385	.	G	.	.	LowGQX	END=92642694	GT	./.
chr1	92642695	.	C	.	.	LowGQX	END=92642700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92642701	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	92642702	.	A	.	.	LowGQX	END=92642755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92642756	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	92642757	.	A	.	.	LowGQX	END=92642854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92642855	.	T	.	.	LowGQX	.	GT	./.
chr1	92642856	.	G	.	.	LowGQX	END=92642890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92642891	.	G	.	.	LowGQX	END=92643103	GT	./.
chr1	92643307	.	T	.	.	LowGQX	END=92643308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92643309	.	C	.	.	LowGQX	.	GT	./.
chr1	92643310	.	A	.	.	LowGQX	END=92643358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92643359	.	A	.	.	LowGQX	.	GT	./.
chr1	92643360	.	A	.	.	LowGQX	END=92643388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92643389	.	C	.	.	LowGQX	.	GT	./.
chr1	92643390	.	A	.	.	LowGQX	END=92643391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92643392	.	G	.	.	LowGQX	.	GT	./.
chr1	92643393	.	A	.	.	LowGQX	END=92643428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92643429	.	T	.	.	LowGQX	.	GT	./.
chr1	92643430	.	G	.	.	LowGQX	END=92643435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92643436	.	G	.	.	LowGQX	.	GT	./.
chr1	92643437	.	A	.	.	LowGQX	END=92643440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92643441	.	T	.	.	LowGQX	END=92643461	GT	./.
chr1	92643868	.	G	.	.	LowGQX	END=92644008	GT	./.
chr1	92645821	.	G	.	.	LowGQX	END=92646944	GT	./.
chr1	92646945	.	G	.	.	LowGQX	END=92647073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92647074	.	T	.	.	LowGQX	END=92647463	GT	./.
chr1	92647464	.	G	.	.	LowGQX	END=92647531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92647532	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	92647533	.	T	.	.	LowGQX	END=92647573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92647574	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	92647575	.	T	.	.	LowGQX	END=92647599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	92647600	.	G	.	.	LowGQX	END=92648152	GT	./.
chr1	92649420	.	G	.	.	LowGQX	END=92649452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92649453	.	A	.	.	LowGQX	END=92649454	GT	./.
chr1	92649455	.	C	.	.	LowGQX	END=92649469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92649470	.	T	.	.	LowGQX	.	GT	./.
chr1	92649471	.	C	.	.	LowGQX	END=92649481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92649482	.	A	.	.	LowGQX	.	GT	./.
chr1	92649483	.	A	.	.	LowGQX	END=92649485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92649486	.	C	.	.	LowGQX	END=92649543	GT	./.
chr1	92649544	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92649545	.	A	.	.	LowGQX	.	GT	./.
chr1	92649546	.	A	.	.	LowGQX	END=92649552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92649553	.	T	.	.	LowGQX	.	GT	./.
chr1	92649554	.	T	.	.	LowGQX	END=92649572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92649573	.	G	.	.	LowGQX	.	GT	./.
chr1	92649574	.	A	.	.	LowGQX	END=92649577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92649578	.	C	.	.	LowGQX	.	GT	./.
chr1	92649579	.	C	.	.	LowGQX	END=92649694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92649695	.	C	.	.	LowGQX	END=92649887	GT	./.
chr1	92696961	.	G	.	.	LowGQX	END=92697060	GT	./.
chr1	92706442	.	A	.	.	LowGQX	END=92706521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92706522	.	C	.	.	LowGQX	END=92706541	GT	./.
chr1	92707766	.	A	.	.	LowGQX	END=92707865	GT	./.
chr1	92709762	.	C	.	.	LowGQX	END=92709944	GT	./.
chr1	92710326	.	T	.	.	LowGQX	END=92710425	GT	./.
chr1	92711055	.	T	.	.	LowGQX	END=92711062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92711063	.	G	.	.	LowGQX	.	GT	./.
chr1	92711064	.	T	.	.	LowGQX	END=92711066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92711067	.	A	.	.	LowGQX	.	GT	./.
chr1	92711068	.	T	.	.	LowGQX	END=92711153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92711154	.	T	.	.	LowGQX	.	GT	./.
chr1	92711155	.	A	.	.	LowGQX	END=92711167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92711168	.	A	.	.	LowGQX	.	GT	./.
chr1	92711169	.	A	.	.	LowGQX	END=92711208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92711209	.	G	.	.	LowGQX	.	GT	./.
chr1	92711210	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92711211	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	92711212	.	A	.	.	LowGQX	END=92711233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92712036	.	C	.	.	PASS	END=92712047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	92712048	.	T	.	.	PASS	END=92712157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	92712158	.	G	.	.	PASS	END=92712198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	92712199	.	A	.	.	PASS	END=92712237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	92712238	.	T	.	.	PASS	END=92712254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	92712578	.	T	.	.	PASS	END=92712598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:87:60
chr1	92712598	.	GAA	G	1165.26	PASS	BaseQRankSum=3.315;DP=55;FS=1.129;HRun=4;HaplotypeScore=37.5909;MQ=60;MQ0=0;MQRankSum=-0.563;QD=21.19;ReadPosRankSum=-0.615;SB=-354.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:27,28:55:99:1204,0,1155:60:99:0.509
chr1	92712599	.	A	.	87.18	PASS	DP=55;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:27:27:57.19:60:57
chr1	92712600	.	A	.	84.16	PASS	DP=54;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:26:26:54.17:60:54
chr1	92712601	.	A	.	.	PASS	END=92712617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	92712618	.	C	.	.	PASS	END=92712697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	92712698	.	G	.	.	PASS	END=92712752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	92713384	.	A	.	.	PASS	END=92713426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	92713427	.	T	.	.	PASS	END=92713456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	92713457	.	T	.	.	PASS	END=92713577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	92713578	.	T	.	.	PASS	END=92713597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	92728369	.	C	.	.	PASS	END=92728489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	92728490	.	A	.	.	PASS	END=92728511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	92728512	.	A	.	.	PASS	END=92728526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	92728527	.	A	.	.	PASS	END=92728534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	92729129	.	T	.	.	PASS	END=92729161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	92729162	.	T	.	.	PASS	END=92729188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	92729189	.	T	.	.	PASS	END=92729283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	92729284	.	T	.	.	PASS	END=92729325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	92729326	.	T	.	.	PASS	END=92729340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	92730060	.	A	.	.	PASS	END=92730090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	92730091	.	C	.	.	PASS	END=92730138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	92730139	.	A	.	.	PASS	END=92730181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	92730182	.	T	.	.	PASS	END=92730215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	92730216	.	A	.	.	PASS	END=92730241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	92730242	.	T	.	.	PASS	END=92730246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	92731923	.	A	.	.	PASS	END=92731935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	92731936	.	T	.	.	PASS	END=92731938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	92731939	.	A	.	.	PASS	END=92731982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	92731983	.	A	.	.	PASS	END=92732043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	92732044	.	T	.	.	PASS	END=92732089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	92732090	.	A	.	.	PASS	END=92732100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	92732206	.	A	.	.	PASS	END=92732288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	92732289	.	T	.	.	PASS	END=92732305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	92732306	.	T	.	.	PASS	END=92732342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	92732343	.	T	.	.	PASS	END=92732347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	92732348	.	G	.	.	PASS	END=92732349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	92733419	.	T	.	.	PASS	END=92733442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	92733443	.	C	.	.	PASS	END=92733515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	92733516	.	A	.	.	PASS	END=92733586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	92733587	.	T	.	.	PASS	END=92733667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	92733668	.	T	.	.	PASS	END=92733693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	92733694	.	T	.	.	PASS	END=92733735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	92733736	.	T	.	.	PASS	END=92733743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	92735229	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:90:60
chr1	92735230	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:54:60
chr1	92735231	.	T	.	.	PASS	END=92735249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	92735250	.	C	.	.	PASS	END=92735358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	92735359	.	T	C	892.63	PASS	BaseQRankSum=-0.084;DP=61;Dels=0.00;FS=2.584;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-1.127;QD=14.63;ReadPosRankSum=-0.836;SB=-337.06	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:25,34:61:99:923,0,685:60:99:0.576
chr1	92735360	.	A	.	.	PASS	END=92735380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	92735381	.	A	.	.	PASS	END=92735384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	92736971	.	T	.	.	PASS	END=92737058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	92737059	.	G	.	.	PASS	END=92737125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	92737126	.	T	.	.	PASS	END=92737240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	92737241	.	A	.	.	PASS	END=92737258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	92737259	.	C	.	.	PASS	END=92737260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	92751996	.	T	.	.	PASS	END=92752043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	92752044	.	T	.	.	PASS	END=92752153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	92752154	.	G	.	.	PASS	END=92752200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	92754420	.	A	.	.	PASS	END=92754432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	92754433	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:73:60
chr1	92754434	.	T	.	.	PASS	END=92754441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	92754442	.	C	.	.	PASS	END=92754512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	92754513	.	T	.	.	PASS	END=92754586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	92754587	.	G	.	.	PASS	END=92754594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	92754595	.	C	.	.	PASS	END=92754649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr1	92754650	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:75:60
chr1	92754651	.	C	.	.	PASS	END=92754663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	92754664	.	A	.	.	PASS	END=92754672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	92754673	.	C	.	.	PASS	END=92754697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	92754698	.	T	.	.	PASS	END=92754700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr1	92754701	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:42:60
chr1	92754702	.	T	.	.	PASS	END=92754709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	92754710	.	T	.	.	PASS	END=92754720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	92754721	.	T	.	.	PASS	END=92754753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	92754754	.	G	.	.	PASS	END=92754755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	92754756	.	A	.	.	PASS	END=92754759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	92755704	.	A	.	.	PASS	END=92755795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	92755796	.	A	.	.	PASS	END=92755832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	92755833	.	A	.	.	PASS	END=92755856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	92755857	.	T	.	.	PASS	END=92755858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	92755859	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:50:22:60
chr1	92755860	.	A	.	.	PASS	END=92755887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	92755888	.	C	.	.	PASS	END=92755907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	92755908	.	T	.	.	PASS	END=92755914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	92756924	.	T	.	.	PASS	END=92756932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	92756933	.	G	.	.	PASS	END=92756937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	92756938	.	G	.	.	PASS	END=92756957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	92756958	.	T	.	.	PASS	END=92756995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	92756996	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:61:60
chr1	92756997	.	A	.	.	PASS	END=92757014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	92757015	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:69:60
chr1	92757016	.	T	.	.	PASS	END=92757070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr1	92757071	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:66:60
chr1	92757072	.	C	.	.	PASS	END=92757105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	92757106	.	T	.	.	PASS	END=92757128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	92757129	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:39:60
chr1	92757130	.	C	.	.	PASS	END=92757141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	92757142	.	T	.	.	PASS	END=92757145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	92762910	.	G	.	.	PASS	END=92762930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:59
chr1	92762931	.	C	.	.	PASS	END=92762932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:69:59
chr1	92762933	.	G	.	.	PASS	END=92762942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	92762943	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr1	92762944	.	A	.	.	PASS	END=92762950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	92762951	.	T	C	558.43	PASS	BaseQRankSum=-0.685;DP=55;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=12.3622;MQ=60;MQ0=0;MQRankSum=-0.685;QD=10.15;ReadPosRankSum=-1.141;SB=-226.88	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,25:55:99:588,0,710:60:99:0.455
chr1	92762952	.	T	.	.	PASS	END=92762992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	92762993	.	G	.	.	PASS	END=92763081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	92763082	.	A	.	.	PASS	END=92763105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	92763106	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:80:11:60
chr1	92763107	.	C	.	.	PASS	END=92763114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	92763115	.	C	.	27.41	LowGQX	DP=84;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:64:84:1.91:60:2
chr1	92763116	.	A	.	.	PASS	END=92763118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	92763119	.	C	.	16.19	LowGQX	DP=88;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:65:88:0.17:60:0
chr1	92763120	.	A	.	.	PASS	END=92763137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	92763467	.	G	.	.	PASS	END=92763536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	92763537	.	T	.	.	PASS	END=92763601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	92763602	.	A	.	.	PASS	END=92763607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	92764558	.	G	.	.	LowGQX	END=92764717	GT	./.
chr1	92765724	.	T	.	.	LowGQX	END=92765823	GT	./.
chr1	92766981	.	A	.	.	LowGQX	END=92767149	GT	./.
chr1	92769532	.	A	.	.	LowGQX	END=92769634	GT	./.
chr1	92769769	.	A	.	.	LowGQX	END=92769923	GT	./.
chr1	92772740	.	T	.	.	LowGQX	END=92772839	GT	./.
chr1	92786124	.	G	.	.	LowGQX	END=92786173	GT	./.
chr1	92786174	.	G	.	.	LowGQX	END=92786223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92789000	.	A	.	.	LowGQX	END=92789134	GT	./.
chr1	92789135	.	G	.	.	LowGQX	END=92789151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92789152	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	92789153	.	T	.	.	LowGQX	END=92789285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92789286	.	T	.	.	LowGQX	END=92789363	GT	./.
chr1	92789364	.	A	.	.	LowGQX	END=92789512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92789513	.	C	.	.	LowGQX	END=92789934	GT	./.
chr1	92798940	.	T	.	.	LowGQX	END=92798989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	92798990	.	C	.	.	LowGQX	END=92799039	GT	./.
chr1	92801842	.	T	.	.	LowGQX	END=92801994	GT	./.
chr1	92811388	.	T	.	.	LowGQX	END=92811487	GT	./.
chr1	92829248	.	C	.	.	LowGQX	END=92829347	GT	./.
chr1	92846279	.	A	.	.	LowGQX	END=92846432	GT	./.
chr1	92852519	.	T	.	.	LowGQX	END=92852618	GT	./.
chr1	92941535	.	G	.	.	PASS	END=92941543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	92941544	.	C	.	.	PASS	END=92941561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	92941562	.	G	.	.	PASS	END=92941590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	92941591	.	T	.	.	PASS	END=92941623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	92941624	.	G	.	.	PASS	END=92941707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	92941708	.	G	.	.	PASS	END=92941747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	92941748	.	C	.	.	PASS	END=92941772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	92941773	.	A	.	.	PASS	END=92941777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:78:60
chr1	92941778	.	A	.	99.21	PASS	DP=71;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:54:71:69.22:60:69
chr1	92941779	.	G	.	.	PASS	END=92941783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	92941784	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:70:66:60
chr1	92941785	.	G	.	.	PASS	END=92941807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	92941808	.	T	.	.	PASS	END=92941815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	92944094	.	T	.	.	PASS	END=92944108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	92944109	.	G	.	.	PASS	END=92944116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	92944117	.	C	.	.	PASS	END=92944120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	92944121	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:53:60
chr1	92944122	.	A	.	.	PASS	END=92944231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	92944232	.	A	.	.	PASS	END=92944264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	92944265	.	A	.	.	PASS	END=92944291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:90:60
chr1	92944292	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:54:60
chr1	92944293	.	A	.	.	PASS	END=92944314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:60
chr1	92944314	.	C	CAG	382.63	PASS	BaseQRankSum=-0.119;DP=47;FS=0.000;HRun=0;HaplotypeScore=234.1144;MQ=60;MQ0=0;MQRankSum=0.954;QD=8.14;ReadPosRankSum=-0.298;SB=-180.88	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,9:47:99:422,0,221:60:99:0.231
chr1	92944315	.	A	.	.	PASS	END=92944341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	92944342	.	G	.	.	PASS	END=92944351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr1	92944352	.	T	.	.	PASS	END=92944353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:39:60
chr1	92944354	.	C	.	.	PASS	END=92944361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	92945854	.	T	.	.	PASS	END=92945867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	92945868	.	G	.	.	PASS	END=92945886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	92945887	.	G	.	.	PASS	END=92945910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	92945911	.	G	.	.	PASS	END=92945939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:245:99:60
chr1	92945940	.	C	.	.	PASS	END=92946037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:282:99:60
chr1	92946038	.	A	.	.	PASS	END=92946072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	92946073	.	C	.	.	PASS	END=92946093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	92946107	.	G	.	.	PASS	END=92946142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	92946143	.	G	.	.	PASS	END=92946207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:60
chr1	92946208	.	T	.	.	PASS	END=92946284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:286:99:60
chr1	92946285	.	A	.	.	PASS	END=92946328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	92946329	.	A	.	.	PASS	END=92946357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	92946358	.	C	.	.	PASS	END=92946369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	92946370	.	T	.	.	PASS	END=92946387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	92946388	.	T	.	.	PASS	END=92946405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	92946406	.	C	.	.	PASS	END=92946435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	92946436	.	G	.	.	PASS	END=92946443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	92946444	.	A	.	.	PASS	END=92946448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	92946449	.	G	.	.	PASS	END=92946462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr1	92946463	.	G	.	.	PASS	END=92946476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	92946477	.	T	.	.	PASS	END=92946478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	92946479	.	G	A	1568.86	PASS	DP=62;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=25.30;SB=-383.60	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,62:62:99:1602,123,0:60:99:1.000
chr1	92946480	.	C	.	.	PASS	END=92946493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	92946494	.	G	.	.	PASS	END=92946507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	92946508	.	C	.	.	PASS	END=92946533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	92946534	.	T	.	.	PASS	END=92946643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	92946644	.	G	.	.	PASS	END=92946662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	92946663	.	G	.	.	PASS	END=92946688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	92946689	.	A	.	.	PASS	END=92946696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	92948370	.	A	.	.	PASS	END=92948386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	92948387	.	G	.	.	PASS	END=92948474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	92948475	.	G	.	.	PASS	END=92948568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	92948569	.	C	.	.	PASS	END=92948641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	92948642	.	C	.	.	PASS	END=92948654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	92948879	.	G	.	.	PASS	END=92948904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:86:60
chr1	92948905	.	C	.	.	PASS	END=92948953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	92948954	.	T	.	.	PASS	END=92948983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	92948984	.	G	.	.	PASS	END=92949049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	92949050	.	T	.	.	PASS	END=92949095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:96:60
chr1	92979211	.	G	.	.	PASS	END=92979221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:62
chr1	92979222	.	G	.	.	PASS	END=92979237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:61
chr1	92979238	.	C	.	.	PASS	END=92979280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	92979281	.	C	.	.	PASS	END=92979289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	92979290	.	C	.	.	PASS	END=92979313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	92979314	.	T	.	.	PASS	END=92979328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	92979329	.	C	.	.	PASS	END=92979353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	92979354	.	A	G	5851.00	PASS	BaseQRankSum=1.678;DP=192;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=15.2987;MQ=60;MQ0=0;MQRankSum=-1.606;QD=30.47;ReadPosRankSum=-0.235;SB=-1177.66	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,191:192:99:5851,451,0:60:99:0.995
chr1	92979355	.	C	.	.	PASS	END=92979478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	92979479	.	C	.	.	PASS	END=92979522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	92979523	.	C	.	.	PASS	END=92979529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	93029197	.	A	.	.	PASS	END=93029215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:60
chr1	93029216	.	C	.	.	PASS	END=93029240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	93029241	.	A	.	.	PASS	END=93029290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	93029291	.	C	.	.	PASS	END=93029296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	93070862	.	A	.	.	PASS	END=93070907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	93070908	.	C	.	.	PASS	END=93070955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	93070956	.	T	.	.	PASS	END=93070961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	93073136	.	A	.	.	PASS	END=93073173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:90:60
chr1	93073174	.	A	.	.	PASS	END=93073192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	93073193	.	C	.	.	PASS	END=93073289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	93073290	.	A	.	.	PASS	END=93073315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	93087824	.	T	.	.	LowGQX	END=93087923	GT	./.
chr1	93089731	.	A	.	.	PASS	END=93089748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	93089749	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:2:60
chr1	93089750	.	T	.	.	PASS	END=93089801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	93089802	.	T	.	.	PASS	END=93089818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	93089819	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	93089820	.	A	.	.	PASS	END=93089821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	93089822	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	93089823	.	T	C	294.73	LowGQ;LowGQX	DP=12;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=24.56;SB=-154.05	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,12:12:24.08:328,24,0:60:24:1.000
chr1	93089824	.	T	.	.	LowGQX	END=93089875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	93089876	.	T	.	.	LowGQX	END=93089883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	93089884	.	A	.	.	LowGQX	END=93089907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	93089908	.	T	.	.	LowGQX	END=93089911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	93089912	.	T	.	.	LowGQX	END=93089915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	93089916	.	A	.	.	LowGQX	END=93089920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	93091349	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93091350	.	C	.	.	LowGQX	.	GT	./.
chr1	93091351	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93091352	.	T	.	.	LowGQX	.	GT	./.
chr1	93091353	.	G	.	.	LowGQX	END=93091357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93091358	.	T	.	.	LowGQX	.	GT	./.
chr1	93091359	.	G	.	.	LowGQX	END=93091364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93091365	.	C	.	.	LowGQX	.	GT	./.
chr1	93091366	.	T	.	.	LowGQX	END=93091368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93091369	.	A	.	.	LowGQX	.	GT	./.
chr1	93091370	.	T	.	.	LowGQX	END=93091371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93091372	.	C	.	.	LowGQX	.	GT	./.
chr1	93091373	.	T	.	.	LowGQX	END=93091378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93091379	.	T	.	.	LowGQX	END=93091380	GT	./.
chr1	93091381	.	C	.	.	LowGQX	END=93091391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93091392	.	C	.	.	LowGQX	.	GT	./.
chr1	93091393	.	T	.	.	LowGQX	END=93091395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93091396	.	C	.	.	LowGQX	END=93091411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	93091412	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	93091413	.	C	.	.	LowGQX	END=93091435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	93091436	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	93091437	.	T	.	.	LowGQX	END=93091446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	93091447	.	C	.	.	LowGQX	END=93091459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	93091460	.	A	.	.	LowGQX	END=93091493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	93101757	.	A	.	.	PASS	END=93101792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	93101793	.	T	.	.	PASS	END=93101813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	93101814	.	G	.	.	PASS	END=93101895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	93128275	.	C	.	.	LowGQX	END=93128422	GT	./.
chr1	93128943	.	G	.	.	LowGQX	END=93129042	GT	./.
chr1	93131473	.	T	.	.	PASS	END=93131505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	93131506	.	G	.	.	PASS	END=93131547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	93131548	.	C	.	.	PASS	END=93131572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	93142643	.	A	.	.	LowGQX	END=93142647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	93142648	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	93142649	.	T	.	.	LowGQX	END=93142651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	93142652	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	93142653	.	C	.	.	LowGQX	END=93142654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	93142655	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	93142656	.	C	.	.	LowGQX	END=93142658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	93142659	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	93142660	.	T	.	.	LowGQX	END=93142661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	93142662	.	T	.	.	PASS	END=93142663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	93142664	.	C	.	.	LowGQX	END=93142670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	93142671	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	93142672	.	G	.	.	LowGQX	END=93142675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	93142676	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	93142677	.	C	.	.	LowGQX	END=93142678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	93142679	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	93142680	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	93142681	.	C	.	.	LowGQX	END=93142682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	93142683	.	A	.	.	LowGQX	END=93142715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	93142716	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	93142717	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr1	93142718	.	A	.	.	PASS	END=93142720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	93142721	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	93142722	.	T	.	.	PASS	END=93142735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	93142736	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	93142737	.	A	.	.	PASS	END=93142744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	93142745	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	93142746	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	93142747	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	93142748	.	T	.	.	PASS	END=93142751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	93142752	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	93142753	.	T	.	.	PASS	END=93142758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	93142759	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	93142760	.	G	.	.	PASS	END=93142761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	93142762	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	93142763	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	93142764	.	T	.	.	LowGQX	END=93142774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	93142775	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	93142776	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	93142777	.	T	.	.	PASS	END=93142781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	93142782	.	A	.	.	LowGQX	END=93142795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	93159357	.	A	.	.	PASS	END=93159439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	93159440	.	A	.	.	PASS	END=93159458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	93159851	.	C	.	.	PASS	END=93159926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:96:60
chr1	93159927	.	G	.	.	PASS	END=93159950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	93160865	.	A	.	.	PASS	END=93160890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	93160891	.	C	.	.	PASS	END=93160901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	93160902	.	T	C	3315.46	PASS	BaseQRankSum=-0.708;DP=115;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.7343;MQ=60;MQ0=0;MQRankSum=1.461;QD=28.83;ReadPosRankSum=-1.220;SB=-1388.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,114:115:99:3315,217,0:60:99:0.991
chr1	93160903	.	T	.	.	PASS	END=93161003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	93161004	.	G	.	.	PASS	END=93161012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	93163415	.	A	.	.	PASS	END=93163418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	93163419	.	G	.	.	PASS	END=93163436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	93163437	.	G	.	.	PASS	END=93163450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	93163451	.	C	.	.	PASS	END=93163492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	93163493	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:21:60
chr1	93163494	.	A	.	.	PASS	END=93163544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	93167625	.	A	.	.	PASS	END=93167657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:60
chr1	93167658	.	A	.	.	PASS	END=93167666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	93167667	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:15:60
chr1	93167668	.	A	.	.	PASS	END=93167685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	93167686	.	A	.	.	PASS	END=93167720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	93167721	.	T	.	.	PASS	END=93167748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	93167749	.	C	.	.	PASS	END=93167767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	93167768	.	T	.	.	PASS	END=93167790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	93167791	.	T	.	.	PASS	END=93167811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	93167812	.	T	.	.	PASS	END=93167819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	93167820	.	T	.	.	PASS	END=93167827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	93167828	.	C	.	.	PASS	END=93167845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	93168920	.	T	.	.	PASS	END=93168933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	93168934	.	T	.	.	PASS	END=93168967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	93168968	.	A	.	.	PASS	END=93169021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	93169022	.	G	.	.	PASS	END=93169082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	93169083	.	A	.	.	PASS	END=93169121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	93169122	.	A	.	.	PASS	END=93169209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	93170110	.	A	.	.	PASS	END=93170169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	93170170	.	C	.	.	PASS	END=93170267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	93170268	.	A	.	.	PASS	END=93170298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	93170299	.	A	.	.	PASS	END=93170303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	93201953	.	A	.	.	PASS	END=93201993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	93201994	.	T	.	.	PASS	END=93202075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	93202076	.	T	.	.	PASS	END=93202141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	93202142	.	A	.	.	PASS	END=93202186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	93257877	.	T	.	.	LowGQX	END=93257976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93297621	.	T	.	.	PASS	END=93297655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	93297656	.	G	.	.	PASS	END=93297726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	93297727	.	T	.	.	PASS	END=93297742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	93298534	.	C	.	.	LowGQX	END=93298542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	93298543	.	G	.	.	LowGQX	END=93298547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	93298548	.	G	.	.	LowGQX	END=93298570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	93298571	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	93298572	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr1	93298573	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	93298574	.	C	.	.	LowGQX	END=93298575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	93298576	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	93298577	.	T	.	.	LowGQX	END=93298578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	93298579	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	93298580	.	C	.	.	LowGQX	END=93298591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	93298592	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	93298593	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	93298594	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	93298595	.	G	.	.	LowGQX	END=93298596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	93298597	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	93298598	.	G	.	.	LowGQX	END=93298599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	93298600	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	93298601	.	A	.	.	LowGQX	END=93298605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	93298606	.	T	.	.	LowGQX	END=93298607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	93298608	.	T	.	.	LowGQX	END=93298612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	93298613	.	A	.	.	LowGQX	END=93298616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	93298617	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:1:60
chr1	93298618	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	93298619	.	A	.	.	LowGQX	END=93298626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	93298627	.	A	.	.	LowGQX	END=93298629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	93298630	.	C	.	.	LowGQX	END=93298633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	93298891	.	A	.	.	PASS	END=93298990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	93298991	.	C	.	.	PASS	END=93299084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	93299085	.	T	.	.	PASS	END=93299152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	93299153	.	A	.	.	PASS	END=93299218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	93299219	.	T	.	.	PASS	END=93299235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	93299236	.	A	.	.	PASS	END=93299268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	93300285	.	G	.	.	PASS	END=93300299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	93300300	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:57:60
chr1	93300301	.	A	.	.	PASS	END=93300330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	93300331	.	T	.	.	PASS	END=93300358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	93300359	.	G	.	.	PASS	END=93300377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	93300378	.	G	.	.	PASS	END=93300426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	93300427	.	A	.	.	PASS	END=93300513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	93300514	.	G	.	.	PASS	END=93300521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	93301696	.	T	.	.	PASS	END=93301707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	93301708	.	A	.	.	PASS	END=93301738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	93301739	.	T	.	.	PASS	END=93301752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	93301753	.	A	.	.	PASS	END=93301758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	93301759	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:49:60
chr1	93301760	.	T	.	.	PASS	END=93301786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	93301787	.	A	.	.	PASS	END=93301808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	93301809	.	A	.	.	PASS	END=93301919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:88:60
chr1	93301920	.	T	.	.	PASS	END=93301946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	93301947	.	C	.	.	PASS	END=93301969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	93301970	.	C	.	.	PASS	END=93301983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	93301984	.	C	.	.	PASS	END=93301993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr1	93301994	.	C	.	.	PASS	END=93302001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	93302844	.	C	.	.	LowGQX	END=93302845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	93302846	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	93302847	.	C	.	.	LowGQX	END=93302849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	93302850	.	A	.	.	LowGQX	END=93302860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	93302861	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:36:60
chr1	93302862	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	93302863	.	C	.	.	PASS	END=93302873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	93302874	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	93302875	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	93302876	.	G	.	.	PASS	END=93302888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	93302889	.	C	.	.	PASS	END=93302896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	93302897	.	T	.	.	PASS	END=93302898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	93302899	.	C	.	.	PASS	END=93302904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	93302905	.	A	.	.	PASS	END=93302907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	93302908	.	C	.	.	PASS	END=93302909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	93302910	.	A	.	.	PASS	END=93302914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	93302915	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:51:60
chr1	93302916	.	G	.	.	PASS	END=93302919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	93302920	.	C	.	.	PASS	END=93302921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	93302922	.	A	.	.	PASS	END=93302943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	93302962	.	G	.	.	PASS	END=93302974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	93302975	.	A	.	.	PASS	END=93302983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	93302984	.	A	.	.	PASS	END=93303023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	93303024	.	T	.	.	PASS	END=93303025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	93303026	.	C	.	.	PASS	END=93303027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	93303028	.	T	.	.	PASS	END=93303051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	93303052	.	A	.	.	PASS	END=93303091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	93303092	.	A	.	.	PASS	END=93303161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	93303162	.	A	.	.	PASS	END=93303174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	93303175	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:39:60
chr1	93303176	.	G	.	.	PASS	END=93303185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	93303186	.	A	.	.	PASS	END=93303188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr1	93303189	.	T	.	.	PASS	END=93303213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr1	93303214	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:18:60
chr1	93303215	.	T	.	.	PASS	END=93303232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	93303233	.	G	.	.	PASS	END=93303241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	93306057	.	A	.	.	PASS	END=93306101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	93306102	.	T	.	.	PASS	END=93306149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	93306150	.	A	.	.	PASS	END=93306205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:97:60
chr1	93306206	.	C	.	.	PASS	END=93306230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	93306231	.	C	.	.	PASS	END=93306246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	93306247	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:45:60
chr1	93306248	.	C	.	.	PASS	END=93306252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	93306253	.	T	.	.	PASS	END=93306268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	93306269	.	T	.	.	PASS	END=93306276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	93306277	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:48:60
chr1	93306278	.	G	.	.	PASS	END=93306282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	93306283	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:30:60
chr1	93306284	.	T	.	.	PASS	END=93306290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	93306291	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:30:60
chr1	93306292	.	T	.	.	PASS	END=93306301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	93306302	.	T	.	.	PASS	END=93306316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	93306317	.	G	A	553.53	SB	DP=15;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=36.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,15:15:45.15:587,45,0:60:45:1.000
chr1	93306318	.	A	.	.	PASS	END=93306324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	93306325	.	C	.	.	PASS	END=93306329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	93306330	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	93306331	.	T	.	.	PASS	END=93306348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	93306349	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	93306350	.	G	.	.	PASS	END=93306351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	93306352	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr1	93306353	.	G	.	.	PASS	END=93306359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	93306360	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	93306361	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	93306362	.	T	.	.	LowGQX	END=93306363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	93306364	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	93306365	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	93306366	.	C	.	.	PASS	END=93306375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	93306376	.	T	.	.	PASS	END=93306404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	93306405	.	A	.	.	PASS	END=93306406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	93306407	.	T	.	.	LowGQX	END=93306408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	93307272	.	T	.	.	PASS	END=93307367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	93307368	.	A	.	.	PASS	END=93307404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:95:60
chr1	93307405	.	C	.	.	PASS	END=93307408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	93307409	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:52:60
chr1	93307410	.	T	.	.	PASS	END=93307414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	93307415	.	A	.	.	PASS	END=93307424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	93307425	.	C	.	.	PASS	END=93307427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:45:60
chr1	93307428	.	G	.	.	PASS	END=93307458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	93307459	.	A	.	.	PASS	END=93307472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	93307473	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:42:60
chr1	93308939	.	A	.	.	LowGQX	END=93308968	GT	./.
chr1	93308969	.	T	.	.	LowGQX	END=93308972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93308973	.	C	.	.	LowGQX	.	GT	./.
chr1	93308974	.	A	.	.	LowGQX	END=93308983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93308984	.	T	.	.	LowGQX	.	GT	./.
chr1	93308985	.	T	.	.	LowGQX	END=93309002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93309003	.	A	.	.	LowGQX	.	GT	./.
chr1	93309004	.	G	.	.	LowGQX	END=93309014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93309015	.	T	.	.	LowGQX	.	GT	./.
chr1	93309016	.	T	.	.	LowGQX	END=93309032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93309033	.	G	.	.	LowGQX	.	GT	./.
chr1	93309034	.	A	.	.	LowGQX	END=93309111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93309112	.	T	.	.	LowGQX	.	GT	./.
chr1	93309113	.	C	.	.	LowGQX	END=93309119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93309120	.	T	.	.	LowGQX	END=93309517	GT	./.
chr1	93309518	.	A	.	.	LowGQX	END=93309532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93309533	.	C	.	.	LowGQX	.	GT	./.
chr1	93309534	.	A	.	.	LowGQX	END=93309686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93309687	.	T	.	.	LowGQX	END=93309752	GT	./.
chr1	93311009	.	T	.	.	LowGQX	END=93311020	GT	./.
chr1	93311021	.	T	.	.	LowGQX	END=93311035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93311036	.	G	.	.	LowGQX	END=93311037	GT	./.
chr1	93311038	.	C	.	.	LowGQX	END=93311046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93311047	.	G	.	.	LowGQX	.	GT	./.
chr1	93311048	.	A	.	.	LowGQX	END=93311054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93311055	.	G	.	.	LowGQX	.	GT	./.
chr1	93311056	.	T	.	.	LowGQX	END=93311064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93311065	.	G	.	.	LowGQX	.	GT	./.
chr1	93311066	.	A	.	.	LowGQX	END=93311083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93311084	.	A	.	.	LowGQX	END=93311108	GT	./.
chr1	93312089	.	C	.	.	LowGQX	END=93312091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93312092	.	T	.	.	LowGQX	END=93312188	GT	./.
chr1	93312739	.	C	.	.	LowGQX	END=93312916	GT	./.
chr1	93316404	.	C	.	.	LowGQX	END=93316512	GT	./.
chr1	93341852	.	C	.	.	LowGQX	END=93342020	GT	./.
chr1	93426910	.	T	.	.	LowGQX	END=93427061	GT	./.
chr1	93545037	.	G	.	.	LowGQX	END=93545107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	93545108	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	93545109	.	A	.	.	LowGQX	END=93545136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	93575785	.	A	.	.	LowGQX	END=93575987	GT	./.
chr1	93576093	.	G	.	.	LowGQX	END=93576192	GT	./.
chr1	93580243	.	A	.	.	LowGQX	END=93580342	GT	./.
chr1	93580543	.	A	.	.	LowGQX	END=93580647	GT	./.
chr1	93581025	.	A	.	.	LowGQX	END=93581177	GT	./.
chr1	93583900	.	A	.	.	LowGQX	END=93583999	GT	./.
chr1	93584818	.	A	.	.	LowGQX	END=93584974	GT	./.
chr1	93586104	.	A	.	.	LowGQX	END=93586273	GT	./.
chr1	93592773	.	T	.	.	LowGQX	END=93592872	GT	./.
chr1	93594833	.	A	.	.	LowGQX	END=93594914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93594915	.	T	.	.	LowGQX	.	GT	./.
chr1	93594916	.	G	.	.	LowGQX	END=93595002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93595003	.	A	.	.	LowGQX	END=93595007	GT	./.
chr1	93599258	.	A	.	.	LowGQX	END=93599367	GT	./.
chr1	93599462	.	A	.	.	LowGQX	END=93599561	GT	./.
chr1	93599646	.	A	.	.	LowGQX	END=93599754	GT	./.
chr1	93602225	.	A	.	.	LowGQX	END=93602396	GT	./.
chr1	93602397	.	C	.	.	LowGQX	END=93602410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	93602411	.	A	.	.	LowGQX	.	GT	./.
chr1	93602412	.	A	.	.	LowGQX	END=93602483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	93602484	.	G	.	.	LowGQX	END=93602586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	93620225	.	T	.	.	LowGQX	END=93620447	GT	./.
chr1	93621567	.	A	.	.	LowGQX	END=93621666	GT	./.
chr1	93621838	.	A	.	.	LowGQX	END=93622031	GT	./.
chr1	93622032	.	G	.	.	LowGQX	END=93622042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93625684	.	A	.	.	LowGQX	END=93625785	GT	./.
chr1	93645598	.	C	.	.	LowGQX	END=93645818	GT	./.
chr1	93646016	.	C	.	.	LowGQX	END=93646475	GT	./.
chr1	93646476	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93646477	.	C	.	.	LowGQX	END=93646478	GT	./.
chr1	93646479	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93646480	.	G	.	.	LowGQX	END=93646484	GT	./.
chr1	93646485	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93646486	.	G	.	.	LowGQX	.	GT	./.
chr1	93646487	.	T	.	.	LowGQX	END=93646491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93646492	.	T	.	.	LowGQX	END=93646493	GT	./.
chr1	93646494	.	C	.	.	LowGQX	END=93646505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93648915	.	A	.	.	LowGQX	END=93649054	GT	./.
chr1	93649533	.	A	.	.	LowGQX	END=93649705	GT	./.
chr1	93651870	.	G	.	.	LowGQX	END=93652062	GT	./.
chr1	93657555	.	A	.	.	LowGQX	END=93657645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93657646	.	T	.	.	LowGQX	END=93657665	GT	./.
chr1	93659121	.	A	.	.	LowGQX	END=93659350	GT	./.
chr1	93667447	.	A	.	.	LowGQX	END=93667463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93667464	.	G	.	.	LowGQX	END=93667544	GT	./.
chr1	93667545	.	G	.	.	LowGQX	END=93667547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93671065	.	A	.	.	LowGQX	END=93671244	GT	./.
chr1	93672662	.	A	.	.	LowGQX	END=93672957	GT	./.
chr1	93676357	.	A	.	.	LowGQX	END=93676485	GT	./.
chr1	93677626	.	A	.	.	LowGQX	END=93677820	GT	./.
chr1	93680298	.	A	.	.	LowGQX	END=93680525	GT	./.
chr1	93682191	.	A	.	.	LowGQX	END=93682350	GT	./.
chr1	93683293	.	A	.	.	LowGQX	END=93683428	GT	./.
chr1	93687164	.	A	.	.	LowGQX	END=93687234	GT	./.
chr1	93687235	.	C	.	.	LowGQX	END=93687316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93687317	.	A	.	.	LowGQX	.	GT	./.
chr1	93687318	.	A	.	.	LowGQX	END=93687343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93687405	.	A	.	.	LowGQX	END=93687469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93687470	.	C	.	.	LowGQX	END=93687504	GT	./.
chr1	93691888	.	A	.	.	LowGQX	END=93692057	GT	./.
chr1	93697981	.	A	.	.	LowGQX	END=93698066	GT	./.
chr1	93698067	.	C	.	.	LowGQX	END=93698100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93698101	.	C	.	.	LowGQX	.	GT	./.
chr1	93698102	.	A	.	.	LowGQX	END=93698117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93698118	.	C	.	.	LowGQX	.	GT	./.
chr1	93698119	.	T	.	.	LowGQX	END=93698131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93698132	.	A	.	.	LowGQX	.	GT	./.
chr1	93698133	.	A	.	.	LowGQX	END=93698134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93698135	.	T	.	.	LowGQX	.	GT	./.
chr1	93698136	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93698137	.	A	.	.	LowGQX	.	GT	./.
chr1	93698138	.	A	.	.	LowGQX	END=93698139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93698140	.	T	.	.	LowGQX	.	GT	./.
chr1	93698141	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93698142	.	G	.	.	LowGQX	.	GT	./.
chr1	93698143	.	A	.	.	LowGQX	END=93698152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93701753	.	A	.	.	LowGQX	END=93701981	GT	./.
chr1	93704865	.	A	.	.	LowGQX	END=93705032	GT	./.
chr1	93705238	.	A	.	.	LowGQX	END=93705455	GT	./.
chr1	93711660	.	A	.	.	LowGQX	END=93711763	GT	./.
chr1	93712343	.	C	.	.	LowGQX	END=93712562	GT	./.
chr1	93720026	.	A	.	.	LowGQX	END=93720043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93720044	.	A	.	.	LowGQX	.	GT	./.
chr1	93720045	.	C	.	.	LowGQX	END=93720052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93720053	.	A	.	.	LowGQX	END=93720064	GT	./.
chr1	93720065	.	A	.	.	LowGQX	END=93720069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93720070	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	93720071	.	T	.	.	LowGQX	END=93720073	GT	./.
chr1	93720074	.	G	.	.	LowGQX	END=93720089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93720090	.	A	.	.	LowGQX	.	GT	./.
chr1	93720091	.	A	.	.	LowGQX	END=93720150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93720151	.	A	.	.	LowGQX	.	GT	./.
chr1	93720152	.	G	.	.	LowGQX	END=93720159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93720160	.	G	.	.	LowGQX	.	GT	./.
chr1	93720161	.	A	.	.	LowGQX	END=93720164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93720165	.	G	.	.	LowGQX	.	GT	./.
chr1	93720166	.	G	.	.	LowGQX	END=93720215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93720216	.	T	.	.	LowGQX	END=93720225	GT	./.
chr1	93721890	.	A	.	.	LowGQX	END=93721899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93721900	.	A	.	.	LowGQX	END=93722097	GT	./.
chr1	93724303	.	A	.	.	LowGQX	END=93724333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93724334	.	A	.	.	LowGQX	.	GT	./.
chr1	93724335	.	C	.	.	LowGQX	END=93724374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93724375	.	G	.	.	LowGQX	END=93724444	GT	./.
chr1	93730256	.	A	.	.	LowGQX	END=93730500	GT	./.
chr1	93735903	.	G	.	.	LowGQX	END=93736371	GT	./.
chr1	93743978	.	G	.	.	LowGQX	END=93744077	GT	./.
chr1	93812201	.	C	.	.	LowGQX	END=93812234	GT	./.
chr1	93812235	.	C	.	.	LowGQX	END=93812244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93812245	.	A	.	.	LowGQX	END=93812246	GT	./.
chr1	93812247	.	A	.	.	LowGQX	END=93812275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93812276	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	93812277	.	T	.	.	LowGQX	END=93812308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	93812309	.	G	.	.	LowGQX	.	GT	./.
chr1	93812310	.	A	.	.	LowGQX	END=93812316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	93812317	.	G	.	.	LowGQX	.	GT	./.
chr1	93812318	.	T	.	.	LowGQX	END=93812362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	93812363	.	C	.	.	LowGQX	.	GT	./.
chr1	93812364	.	C	.	.	LowGQX	END=93812367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	93812368	.	G	.	.	LowGQX	.	GT	./.
chr1	93812369	.	A	.	.	LowGQX	END=93812409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93812410	.	C	.	.	LowGQX	END=93812421	GT	./.
chr1	93812422	.	G	.	.	LowGQX	END=93812424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93819463	.	A	.	.	LowGQX	END=93819630	GT	./.
chr1	93826048	.	A	.	.	LowGQX	.	GT	./.
chr1	93826049	.	G	.	.	LowGQX	END=93826050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93826051	.	C	.	.	LowGQX	.	GT	./.
chr1	93826052	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93826053	.	A	.	.	LowGQX	.	GT	./.
chr1	93826054	.	G	.	.	LowGQX	END=93826057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93826058	.	G	.	.	LowGQX	.	GT	./.
chr1	93826059	.	C	.	.	LowGQX	END=93826062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93826063	.	A	.	.	LowGQX	END=93826064	GT	./.
chr1	93826065	.	G	.	.	LowGQX	END=93826067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93826068	.	G	.	.	LowGQX	.	GT	./.
chr1	93826069	.	A	.	.	LowGQX	END=93826072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93826073	.	G	.	.	LowGQX	END=93826227	GT	./.
chr1	93913741	.	G	.	.	LowGQX	END=93913841	GT	./.
chr1	93913842	.	A	.	.	LowGQX	END=93913900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93964974	.	G	.	.	LowGQX	END=93965119	GT	./.
chr1	93965120	.	G	.	.	LowGQX	END=93965140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93987556	.	G	.	.	LowGQX	END=93987715	GT	./.
chr1	93988900	.	G	.	.	LowGQX	END=93989048	GT	./.
chr1	93989799	.	C	.	.	LowGQX	END=93989898	GT	./.
chr1	93995208	.	G	.	.	LowGQX	END=93995367	GT	./.
chr1	93996261	.	G	.	.	LowGQX	END=93996414	GT	./.
chr1	93996415	.	A	.	.	LowGQX	END=93996419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93996420	.	G	.	.	LowGQX	.	GT	./.
chr1	93996421	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93996422	.	G	.	.	LowGQX	.	GT	./.
chr1	93996423	.	A	.	.	LowGQX	END=93996425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93996426	.	C	.	.	LowGQX	.	GT	./.
chr1	93996427	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93996428	.	T	.	.	LowGQX	.	GT	./.
chr1	93996429	.	C	.	.	LowGQX	END=93996431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93996432	.	A	.	.	LowGQX	.	GT	./.
chr1	93996433	.	T	.	.	LowGQX	END=93996437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93996438	.	A	.	.	LowGQX	.	GT	./.
chr1	93996439	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	93996440	.	G	.	.	LowGQX	.	GT	./.
chr1	93998478	.	G	.	.	LowGQX	END=93998625	GT	./.
chr1	94000261	.	G	.	.	LowGQX	END=94000465	GT	./.
chr1	94001888	.	G	.	.	LowGQX	END=94001893	GT	./.
chr1	94001894	.	G	.	.	LowGQX	END=94002047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94006556	.	G	.	.	LowGQX	END=94006655	GT	./.
chr1	94009663	.	G	.	.	LowGQX	END=94009773	GT	./.
chr1	94012348	.	T	.	.	LowGQX	END=94012484	GT	./.
chr1	94012485	.	C	.	.	LowGQX	END=94012567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94012901	.	A	.	.	LowGQX	END=94013000	GT	./.
chr1	94014834	.	G	.	.	LowGQX	.	GT	./.
chr1	94014835	.	T	.	.	LowGQX	END=94014836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94014837	.	C	.	.	LowGQX	END=94014839	GT	./.
chr1	94014840	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94014841	.	G	.	.	LowGQX	END=94014845	GT	./.
chr1	94014846	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94014847	.	T	.	.	LowGQX	END=94014848	GT	./.
chr1	94014849	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94014850	.	C	.	.	LowGQX	.	GT	./.
chr1	94014851	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94014852	.	C	.	.	LowGQX	.	GT	./.
chr1	94014853	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94014854	.	G	.	.	LowGQX	END=94014855	GT	./.
chr1	94014856	.	T	.	.	LowGQX	END=94014859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94014860	.	G	.	.	LowGQX	.	GT	./.
chr1	94014861	.	C	.	.	LowGQX	END=94014867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94014868	.	G	.	.	LowGQX	.	GT	./.
chr1	94014869	.	G	.	.	LowGQX	END=94014871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94014872	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	94014873	.	T	.	.	LowGQX	END=94014877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94014878	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	94014879	.	G	.	.	LowGQX	END=94014936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94014937	.	T	.	.	LowGQX	.	GT	./.
chr1	94014938	.	C	.	.	LowGQX	END=94014983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94016503	.	G	.	.	LowGQX	END=94016682	GT	./.
chr1	94017920	.	A	.	.	LowGQX	END=94018019	GT	./.
chr1	94027796	.	T	.	.	LowGQX	END=94027978	GT	./.
chr1	94032834	.	A	.	.	LowGQX	END=94032842	GT	./.
chr1	94032843	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94032844	.	A	.	.	LowGQX	END=94032845	GT	./.
chr1	94032846	.	C	.	.	LowGQX	END=94032847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94032848	.	T	.	.	LowGQX	.	GT	./.
chr1	94032849	.	C	.	.	LowGQX	END=94032854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94032855	.	A	.	.	LowGQX	.	GT	./.
chr1	94032856	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94032857	.	T	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	94032858	.	C	.	.	LowGQX	END=94032859	GT	./.
chr1	94032860	.	T	.	.	LowGQX	END=94032866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94032867	.	G	.	.	LowGQX	.	GT	./.
chr1	94032868	.	C	.	.	LowGQX	END=94032870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94032871	.	T	.	.	LowGQX	.	GT	./.
chr1	94032872	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94032873	.	T	.	.	LowGQX	END=94032874	GT	./.
chr1	94032875	.	C	.	.	LowGQX	END=94032881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94032882	.	G	.	.	LowGQX	END=94032884	GT	./.
chr1	94032885	.	C	.	.	LowGQX	END=94032887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94032888	.	G	.	.	LowGQX	.	GT	./.
chr1	94032889	.	A	.	.	LowGQX	END=94032900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94032901	.	G	.	.	LowGQX	END=94032902	GT	./.
chr1	94032903	.	C	.	.	LowGQX	END=94032907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94032908	.	G	.	.	LowGQX	.	GT	./.
chr1	94032909	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94032910	.	T	.	.	LowGQX	END=94032911	GT	./.
chr1	94032912	.	C	.	.	LowGQX	END=94032913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94032914	.	G	.	.	LowGQX	.	GT	./.
chr1	94032915	.	C	.	.	LowGQX	END=94032923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94032924	.	A	.	.	LowGQX	.	GT	./.
chr1	94032925	.	C	.	.	LowGQX	END=94032937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94032938	.	T	.	.	LowGQX	END=94032939	GT	./.
chr1	94032940	.	T	.	.	LowGQX	END=94032955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94032956	.	T	.	.	LowGQX	END=94032957	GT	./.
chr1	94032958	.	C	.	.	LowGQX	END=94032961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94032962	.	C	.	.	LowGQX	.	GT	./.
chr1	94032963	.	A	.	.	LowGQX	END=94032967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94032968	.	T	.	.	LowGQX	.	GT	./.
chr1	94032969	.	C	.	.	LowGQX	END=94032991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94032992	.	T	.	.	LowGQX	END=94033050	GT	./.
chr1	94033295	.	A	.	.	LowGQX	END=94033410	GT	./.
chr1	94037098	.	C	.	.	LowGQX	END=94037400	GT	./.
chr1	94041569	.	A	.	.	LowGQX	END=94041688	GT	./.
chr1	94047856	.	A	.	.	LowGQX	END=94047929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94047930	.	T	.	.	LowGQX	END=94047931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	94047932	.	T	A	6.77	LowGQX;LowQD	BaseQRankSum=1.026;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-1.026;QD=1.69;ReadPosRankSum=1.026;SB=-30.29	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:35.74:36,0,63:60:7:0.500
chr1	94047933	.	C	.	.	LowGQX	END=94047977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	94047978	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:3:60
chr1	94047979	.	G	.	.	LowGQX	END=94047997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	94047998	.	T	A	9.30	LowGQX	BaseQRankSum=-1.026;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-1.026;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:38.75:39,0,39:60:9:0.500
chr1	94047999	.	G	.	.	LowGQX	END=94048057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94048058	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	94048059	.	C	.	.	LowGQX	END=94048070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	94048071	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	94048072	.	G	.	.	LowGQX	END=94048102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94048103	.	C	.	.	LowGQX	.	GT	./.
chr1	94048104	.	A	.	.	LowGQX	END=94048106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94048107	.	A	.	.	LowGQX	.	GT	./.
chr1	94048108	.	T	.	.	LowGQX	END=94048110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94048111	.	A	.	.	LowGQX	.	GT	./.
chr1	94048112	.	G	.	.	LowGQX	END=94048121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94048122	.	G	.	.	LowGQX	.	GT	./.
chr1	94048123	.	T	.	.	LowGQX	END=94048129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94048130	.	C	.	.	LowGQX	.	GT	./.
chr1	94048131	.	A	.	.	LowGQX	END=94048134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94048135	.	T	.	.	LowGQX	.	GT	./.
chr1	94048136	.	T	.	.	LowGQX	END=94048150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94048151	.	C	.	.	LowGQX	.	GT	./.
chr1	94048152	.	C	.	.	LowGQX	END=94048165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94048166	.	C	.	.	LowGQX	.	GT	./.
chr1	94048167	.	T	.	.	LowGQX	END=94048168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94048169	.	T	.	.	LowGQX	.	GT	./.
chr1	94048170	.	G	.	.	LowGQX	END=94048177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94048178	.	C	.	.	LowGQX	END=94048179	GT	./.
chr1	94048180	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94048181	.	T	.	.	LowGQX	.	GT	./.
chr1	94048182	.	G	.	.	LowGQX	END=94048183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94048184	.	G	.	.	LowGQX	END=94048248	GT	./.
chr1	94048249	.	A	.	.	LowGQX	END=94048267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94048268	.	C	.	.	LowGQX	.	GT	./.
chr1	94048269	.	T	.	.	LowGQX	END=94048280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94048281	.	G	.	.	LowGQX	.	GT	./.
chr1	94048282	.	G	.	.	LowGQX	END=94048286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94048287	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	94048288	.	G	.	.	LowGQX	END=94048300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94048301	.	C	.	.	LowGQX	.	GT	./.
chr1	94048302	.	C	.	.	LowGQX	END=94048307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94048308	.	G	.	.	LowGQX	.	GT	./.
chr1	94048309	.	A	.	.	LowGQX	END=94048400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94048401	.	C	.	.	LowGQX	.	GT	./.
chr1	94048402	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94048403	.	T	.	.	LowGQX	END=94048512	GT	./.
chr1	94049573	.	A	.	.	LowGQX	END=94049680	GT	./.
chr1	94054532	.	A	.	.	LowGQX	END=94054543	GT	./.
chr1	94054544	.	T	.	.	LowGQX	END=94054550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94054551	.	G	.	.	LowGQX	.	GT	./.
chr1	94054552	.	G	.	.	LowGQX	END=94054556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94054557	.	A	.	.	LowGQX	.	GT	./.
chr1	94054558	.	T	.	.	LowGQX	END=94054571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94054572	.	C	.	.	LowGQX	END=94054573	GT	./.
chr1	94054574	.	G	.	.	LowGQX	END=94054588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94054589	.	T	.	.	LowGQX	.	GT	./.
chr1	94054590	.	G	.	.	LowGQX	END=94054626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94054627	.	G	.	.	LowGQX	.	GT	./.
chr1	94054628	.	T	.	.	LowGQX	END=94054694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94054695	.	C	.	.	LowGQX	END=94054978	GT	./.
chr1	94057780	.	G	.	.	LowGQX	END=94057952	GT	./.
chr1	94079396	.	A	.	.	LowGQX	END=94079446	GT	./.
chr1	94079447	.	G	.	.	LowGQX	END=94079495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94107830	.	A	.	.	LowGQX	END=94107929	GT	./.
chr1	94140158	.	T	.	.	LowGQX	END=94140344	GT	./.
chr1	94140345	.	G	.	.	LowGQX	END=94140349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140350	.	G	.	.	LowGQX	END=94140351	GT	./.
chr1	94140352	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140353	.	A	.	.	LowGQX	END=94140354	GT	./.
chr1	94140355	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140356	.	T	.	.	LowGQX	.	GT	./.
chr1	94140357	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140358	.	T	.	.	LowGQX	END=94140359	GT	./.
chr1	94140360	.	G	.	.	LowGQX	END=94140361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140362	.	T	.	.	LowGQX	.	GT	./.
chr1	94140363	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140364	.	G	.	.	LowGQX	.	GT	./.
chr1	94140365	.	G	.	.	LowGQX	END=94140367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140368	.	T	.	.	LowGQX	.	GT	./.
chr1	94140369	.	C	.	.	LowGQX	END=94140370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140371	.	G	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=42;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:42:3:1.000
chr1	94140372	.	G	.	.	LowGQX	.	GT	./.
chr1	94140373	.	G	.	.	LowGQX	END=94140374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140375	.	G	.	.	LowGQX	.	GT	./.
chr1	94140376	.	A	.	.	LowGQX	END=94140377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140378	.	G	.	.	LowGQX	END=94140379	GT	./.
chr1	94140380	.	T	.	.	LowGQX	END=94140381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140382	.	A	.	.	LowGQX	.	GT	./.
chr1	94140383	.	G	.	5.68	LowGQX	DP=1;MQ=42;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:42:0
chr1	94140384	.	C	.	2.30	LowGQX	DP=1;MQ=42;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:42:0
chr1	94140385	.	G	.	5.68	LowGQX	DP=1;MQ=42;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:42:0
chr1	94140386	.	A	.	.	LowGQX	END=94140388	GT	./.
chr1	94140389	.	G	.	.	LowGQX	END=94140390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140391	.	G	.	.	LowGQX	.	GT	./.
chr1	94140392	.	G	.	.	LowGQX	END=94140393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140394	.	C	.	.	LowGQX	END=94140395	GT	./.
chr1	94140396	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140397	.	G	.	.	LowGQX	END=94140398	GT	./.
chr1	94140399	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140400	.	G	.	.	LowGQX	.	GT	./.
chr1	94140401	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140402	.	T	.	.	LowGQX	END=94140403	GT	./.
chr1	94140404	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140405	.	G	.	.	LowGQX	.	GT	./.
chr1	94140406	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140407	.	A	.	.	LowGQX	END=94140410	GT	./.
chr1	94140411	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140412	.	C	.	.	LowGQX	.	GT	./.
chr1	94140413	.	A	.	.	LowGQX	END=94140414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:42
chr1	94140415	.	G	.	.	LowGQX	END=94140488	GT	./.
chr1	94312327	.	C	.	.	LowGQX	END=94312414	GT	./.
chr1	94312415	.	A	.	.	LowGQX	END=94312416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94312417	.	C	.	.	LowGQX	.	GT	./.
chr1	94312418	.	C	.	.	LowGQX	END=94312422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94312423	.	T	.	.	LowGQX	.	GT	./.
chr1	94312424	.	A	.	.	LowGQX	END=94312456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94312457	.	C	.	.	LowGQX	.	GT	./.
chr1	94312458	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94312459	.	A	.	.	LowGQX	END=94312460	GT	./.
chr1	94312461	.	A	.	.	LowGQX	END=94312465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94312466	.	A	.	.	LowGQX	.	GT	./.
chr1	94312467	.	C	.	.	LowGQX	END=94312471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94312472	.	A	.	.	LowGQX	.	GT	./.
chr1	94312473	.	C	.	.	LowGQX	END=94312478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94312479	.	T	.	.	LowGQX	.	GT	./.
chr1	94312480	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94312481	.	T	.	.	LowGQX	.	GT	./.
chr1	94312482	.	T	.	.	LowGQX	END=94312485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94312486	.	A	.	.	LowGQX	.	GT	./.
chr1	94312487	.	C	.	.	LowGQX	END=94312497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94312498	.	T	.	.	LowGQX	END=94312499	GT	./.
chr1	94312500	.	A	.	.	LowGQX	END=94312502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94312503	.	A	.	.	LowGQX	.	GT	./.
chr1	94312504	.	C	.	.	LowGQX	END=94312509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94312510	.	A	.	.	LowGQX	.	GT	./.
chr1	94312511	.	G	.	.	LowGQX	END=94312514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94312515	.	G	.	.	LowGQX	.	GT	./.
chr1	94312516	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94312517	.	A	.	.	LowGQX	.	GT	./.
chr1	94312518	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94312519	.	A	.	.	LowGQX	.	GT	./.
chr1	94312520	.	C	.	.	LowGQX	END=94312522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94312523	.	A	.	.	LowGQX	.	GT	./.
chr1	94312524	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94312525	.	G	.	.	LowGQX	END=94312537	GT	./.
chr1	94335404	.	A	.	.	LowGQX	END=94335503	GT	./.
chr1	94336238	.	C	.	.	LowGQX	END=94336348	GT	./.
chr1	94337627	.	C	.	.	LowGQX	END=94337792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94338673	.	A	.	.	LowGQX	END=94338823	GT	./.
chr1	94341200	.	C	.	.	LowGQX	END=94341379	GT	./.
chr1	94341823	.	C	.	.	LowGQX	END=94341827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94341828	.	T	.	.	LowGQX	END=94341840	GT	./.
chr1	94341841	.	A	.	.	LowGQX	END=94341847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94341848	.	A	.	.	LowGQX	.	GT	./.
chr1	94341849	.	A	.	.	LowGQX	END=94341851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94341852	.	C	.	.	LowGQX	.	GT	./.
chr1	94341853	.	T	.	.	LowGQX	END=94341855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94341856	.	T	.	.	LowGQX	.	GT	./.
chr1	94341857	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94341858	.	C	.	.	LowGQX	END=94341859	GT	./.
chr1	94341860	.	T	.	.	LowGQX	END=94341872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94341873	.	C	.	.	LowGQX	.	GT	./.
chr1	94341874	.	T	.	.	LowGQX	END=94341883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94341884	.	T	.	.	LowGQX	.	GT	./.
chr1	94341885	.	C	.	.	LowGQX	END=94341898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94341899	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	94341900	.	C	.	.	LowGQX	END=94341935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94341936	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	94341937	.	T	.	.	LowGQX	END=94341947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94341948	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	94341949	.	A	.	.	LowGQX	END=94341960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94341961	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	94341962	.	T	.	.	LowGQX	END=94341976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94341977	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	94341978	.	A	.	.	LowGQX	END=94341985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94341986	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	94341987	.	T	.	.	LowGQX	END=94342015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342016	.	T	.	.	LowGQX	.	GT	./.
chr1	94342017	.	C	.	.	LowGQX	END=94342027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342028	.	A	.	.	LowGQX	END=94342062	GT	./.
chr1	94342063	.	A	.	.	LowGQX	END=94342065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342066	.	T	.	.	LowGQX	.	GT	./.
chr1	94342067	.	A	.	.	LowGQX	END=94342071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342072	.	C	.	.	LowGQX	.	GT	./.
chr1	94342073	.	T	.	.	LowGQX	END=94342078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342079	.	T	.	.	LowGQX	.	GT	./.
chr1	94342080	.	G	.	.	LowGQX	END=94342087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342088	.	T	.	.	LowGQX	.	GT	./.
chr1	94342089	.	T	.	.	LowGQX	END=94342090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342091	.	T	.	.	LowGQX	END=94342092	GT	./.
chr1	94342093	.	A	.	.	LowGQX	END=94342096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342097	.	A	.	.	LowGQX	END=94342098	GT	./.
chr1	94342099	.	A	.	.	LowGQX	END=94342101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342102	.	T	.	.	LowGQX	.	GT	./.
chr1	94342103	.	A	.	.	LowGQX	END=94342105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342106	.	G	.	.	LowGQX	.	GT	./.
chr1	94342107	.	T	.	.	LowGQX	END=94342108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342109	.	T	.	.	LowGQX	.	GT	./.
chr1	94342110	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342111	.	C	.	.	LowGQX	END=94342112	GT	./.
chr1	94342113	.	C	.	.	LowGQX	END=94342114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342115	.	T	.	.	LowGQX	END=94342116	GT	./.
chr1	94342117	.	A	.	.	LowGQX	END=94342118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342119	.	T	.	.	LowGQX	.	GT	./.
chr1	94342120	.	C	.	.	LowGQX	END=94342121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342122	.	C	.	.	LowGQX	END=94342123	GT	./.
chr1	94342124	.	C	.	.	LowGQX	END=94342127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342128	.	T	.	.	LowGQX	.	GT	./.
chr1	94342129	.	T	.	.	LowGQX	END=94342130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342131	.	C	.	.	LowGQX	.	GT	./.
chr1	94342132	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342133	.	G	.	.	LowGQX	.	GT	./.
chr1	94342134	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342135	.	C	.	.	LowGQX	.	GT	./.
chr1	94342136	.	T	.	.	LowGQX	END=94342145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342146	.	C	.	.	LowGQX	.	GT	./.
chr1	94342147	.	A	.	.	LowGQX	END=94342157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342158	.	G	.	.	LowGQX	.	GT	./.
chr1	94342159	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342160	.	A	.	.	LowGQX	.	GT	./.
chr1	94342161	.	C	.	.	LowGQX	END=94342182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342183	.	A	.	.	LowGQX	END=94342184	GT	./.
chr1	94342185	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342186	.	C	.	.	LowGQX	.	GT	./.
chr1	94342187	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342188	.	G	.	.	LowGQX	.	GT	./.
chr1	94342189	.	A	.	.	LowGQX	END=94342191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342192	.	T	.	.	LowGQX	.	GT	./.
chr1	94342193	.	G	.	.	LowGQX	END=94342196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342197	.	T	.	.	LowGQX	.	GT	./.
chr1	94342198	.	G	.	.	LowGQX	END=94342199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342200	.	G	.	.	LowGQX	END=94342201	GT	./.
chr1	94342202	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342203	.	C	.	.	LowGQX	.	GT	./.
chr1	94342204	.	A	.	.	LowGQX	END=94342208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342209	.	T	.	.	LowGQX	.	GT	./.
chr1	94342210	.	G	.	.	LowGQX	END=94342213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342214	.	A	.	.	LowGQX	END=94342506	GT	./.
chr1	94342507	.	G	.	.	LowGQX	END=94342563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342564	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	94342565	.	T	.	.	LowGQX	END=94342596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342597	.	A	.	.	LowGQX	.	GT	./.
chr1	94342598	.	T	.	.	LowGQX	END=94342621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342622	.	T	.	.	LowGQX	.	GT	./.
chr1	94342623	.	T	.	.	LowGQX	END=94342828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342829	.	A	.	.	LowGQX	END=94342873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	94342874	.	A	.	.	LowGQX	END=94342885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94342886	.	C	.	.	LowGQX	.	GT	./.
chr1	94342887	.	T	.	.	LowGQX	END=94342888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342889	.	C	.	.	LowGQX	.	GT	./.
chr1	94342890	.	T	.	.	LowGQX	END=94342896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342897	.	A	.	.	LowGQX	.	GT	./.
chr1	94342898	.	A	.	.	LowGQX	END=94342901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342902	.	C	.	.	LowGQX	.	GT	./.
chr1	94342903	.	A	.	.	LowGQX	END=94342904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342905	.	A	.	.	LowGQX	.	GT	./.
chr1	94342906	.	G	.	.	LowGQX	END=94342907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342908	.	A	.	.	LowGQX	.	GT	./.
chr1	94342909	.	T	.	.	LowGQX	END=94342911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342912	.	A	.	.	LowGQX	END=94342913	GT	./.
chr1	94342914	.	T	.	.	LowGQX	END=94342916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342917	.	C	.	.	LowGQX	.	GT	./.
chr1	94342918	.	T	.	.	LowGQX	END=94342919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342920	.	A	.	.	LowGQX	.	GT	./.
chr1	94342921	.	G	.	.	LowGQX	END=94342925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342926	.	A	.	.	LowGQX	END=94342927	GT	./.
chr1	94342928	.	G	.	.	LowGQX	END=94342929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342930	.	C	.	.	LowGQX	.	GT	./.
chr1	94342931	.	T	.	.	LowGQX	END=94342935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342936	.	A	.	.	LowGQX	.	GT	./.
chr1	94342937	.	T	.	.	LowGQX	END=94342941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342942	.	T	.	.	LowGQX	.	GT	./.
chr1	94342943	.	A	.	.	LowGQX	END=94342944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342945	.	A	.	.	LowGQX	.	GT	./.
chr1	94342946	.	G	.	.	LowGQX	END=94342950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342951	.	T	.	.	LowGQX	.	GT	./.
chr1	94342952	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342953	.	T	.	.	LowGQX	.	GT	./.
chr1	94342954	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342955	.	T	.	.	LowGQX	.	GT	./.
chr1	94342956	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342957	.	A	.	.	LowGQX	.	GT	./.
chr1	94342958	.	G	.	.	LowGQX	END=94342959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342960	.	T	.	.	LowGQX	.	GT	./.
chr1	94342961	.	T	.	.	LowGQX	END=94342962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342963	.	T	.	.	LowGQX	.	GT	./.
chr1	94342964	.	T	.	.	LowGQX	END=94342966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342967	.	C	.	.	LowGQX	.	GT	./.
chr1	94342968	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342969	.	T	.	.	LowGQX	.	GT	./.
chr1	94342970	.	G	.	.	LowGQX	END=94342971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94342972	.	A	.	.	LowGQX	END=94343201	GT	./.
chr1	94343202	.	A	.	.	LowGQX	END=94343206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94343207	.	G	.	.	LowGQX	.	GT	./.
chr1	94343208	.	A	.	.	LowGQX	END=94343212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94343213	.	T	.	.	LowGQX	.	GT	./.
chr1	94343214	.	T	.	.	LowGQX	END=94343215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94343216	.	G	.	.	LowGQX	END=94343217	GT	./.
chr1	94343218	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94343219	.	T	.	.	LowGQX	.	GT	./.
chr1	94343220	.	C	.	.	LowGQX	END=94343224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94343225	.	T	.	.	LowGQX	.	GT	./.
chr1	94343226	.	C	.	.	LowGQX	END=94343227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94343228	.	G	.	.	LowGQX	END=94343229	GT	./.
chr1	94343230	.	G	.	.	LowGQX	END=94343231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94343232	.	T	.	.	LowGQX	.	GT	./.
chr1	94343233	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	94343234	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94343235	.	C	.	.	LowGQX	.	GT	./.
chr1	94343236	.	T	.	.	LowGQX	END=94343243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94343244	.	T	.	.	LowGQX	.	GT	./.
chr1	94343245	.	A	.	.	LowGQX	END=94343247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94343248	.	T	.	.	LowGQX	.	GT	./.
chr1	94343249	.	G	.	.	LowGQX	END=94343251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94343252	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	94343253	.	C	.	.	LowGQX	END=94343439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94344619	.	A	.	.	LowGQX	END=94344672	GT	./.
chr1	94344673	.	G	.	.	LowGQX	END=94344695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94344696	.	A	.	.	LowGQX	.	GT	./.
chr1	94344697	.	A	.	.	LowGQX	END=94344715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94344716	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	94344717	.	C	.	.	LowGQX	END=94344718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94354544	.	A	.	.	PASS	END=94354640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	94354641	.	G	.	.	PASS	END=94354717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	94360168	.	A	.	.	PASS	END=94360286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	94362172	.	A	.	.	PASS	END=94362200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	94362201	.	C	.	.	PASS	END=94362290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	94362291	.	C	.	.	PASS	END=94362322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	94362323	.	G	.	.	PASS	END=94362351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	94362352	.	T	.	.	PASS	END=94362368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	94362369	.	T	.	.	PASS	END=94362374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:93:60
chr1	94362375	.	G	.	.	PASS	END=94362378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	94363323	.	A	.	.	PASS	END=94363345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	94363346	.	T	.	.	PASS	END=94363382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	94363383	.	G	.	.	PASS	END=94363467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	94363468	.	A	.	.	PASS	END=94363474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	94367079	.	T	.	.	PASS	END=94367208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	94367209	.	A	.	.	PASS	END=94367233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	94370007	.	G	.	.	PASS	END=94370142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	94370143	.	A	.	.	PASS	END=94370161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	94374542	.	C	.	.	PASS	END=94374587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr1	94374588	.	G	.	.	PASS	END=94374595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:60
chr1	94374596	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:6:60
chr1	94374597	.	C	.	.	PASS	END=94374650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	94374651	.	C	.	.	PASS	END=94374663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	94374664	.	T	.	.	PASS	END=94374676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	94374677	.	C	.	.	LowGQX	END=94374678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	94374679	.	C	.	.	LowGQX	END=94374698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	94374699	.	C	.	.	LowGQX	END=94374721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	94458742	.	T	.	.	PASS	END=94458746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	94458747	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:27:60
chr1	94458748	.	T	.	.	PASS	END=94458769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	94458770	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:75:60
chr1	94458771	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:33:60
chr1	94458772	.	A	.	.	PASS	END=94458782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	94458783	.	G	.	.	PASS	END=94458810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	94458811	.	A	.	.	PASS	END=94458865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	94461614	.	C	.	.	PASS	END=94461643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr1	94461644	.	C	.	.	PASS	END=94461661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	94461662	.	T	.	.	PASS	END=94461703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	94461704	.	A	.	.	PASS	END=94461796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	94461797	.	A	.	.	PASS	END=94461802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	94463366	.	G	.	.	PASS	END=94463374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	94463375	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:45:60
chr1	94463376	.	C	.	.	PASS	END=94463389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	94463390	.	G	.	.	PASS	END=94463399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr1	94463400	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:51:60
chr1	94463401	.	C	.	.	PASS	END=94463418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	94463419	.	G	.	.	PASS	END=94463423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	94463424	.	A	.	.	PASS	END=94463444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:84:60
chr1	94463445	.	T	.	.	PASS	END=94463484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	94463485	.	G	.	.	PASS	END=94463540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	94463541	.	T	.	.	PASS	END=94463627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	94463628	.	G	.	.	PASS	END=94463681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	94463682	.	A	.	.	PASS	END=94463691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	94463692	.	A	.	.	PASS	END=94463707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	94463708	.	T	.	.	PASS	END=94463717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	94466341	.	C	.	.	PASS	END=94466384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	94466385	.	T	.	.	PASS	END=94466602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	94466603	.	A	.	.	PASS	END=94466624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	94466625	.	G	.	.	PASS	END=94466638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	94466639	.	T	.	.	PASS	END=94466651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	94466652	.	T	.	.	PASS	END=94466667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:60
chr1	94466668	.	G	.	.	PASS	END=94466669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	94466670	.	T	.	28.20	LowGQX	DP=48;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:34:48:2.20:60:2
chr1	94466671	.	G	.	.	PASS	END=94466677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr1	94466678	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:47:60
chr1	94466679	.	G	.	.	PASS	END=94466680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr1	94466681	.	T	.	.	PASS	END=94466682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:60:59
chr1	94466683	.	G	.	.	PASS	END=94466689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:84:59
chr1	94466690	.	C	.	.	PASS	END=94466712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:59
chr1	94467114	.	A	.	.	LowGQX	END=94467146	GT	./.
chr1	94467147	.	G	.	.	LowGQX	END=94467160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94467161	.	G	.	.	LowGQX	END=94467163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	94467164	.	C	.	.	LowGQX	END=94467188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	94467189	.	G	.	.	LowGQX	END=94467191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	94467192	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	94467193	.	G	.	.	LowGQX	END=94467198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	94467199	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	94467200	.	G	.	.	PASS	END=94467204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	94467205	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	94467206	.	A	.	.	PASS	END=94467209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	94467210	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	94467211	.	A	.	.	PASS	END=94467213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	94467214	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	94467215	.	T	.	.	PASS	END=94467219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	94467220	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	94467221	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	94467222	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	94467223	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	94467224	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	94467225	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	94467226	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	94467227	.	T	.	.	PASS	END=94467229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	94467230	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	94467231	.	T	.	.	PASS	END=94467240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	94467241	.	G	.	.	PASS	END=94467249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	94467250	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	94467251	.	C	.	.	PASS	END=94467254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	94467255	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	94467256	.	C	.	.	PASS	END=94467265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	94467266	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	94467267	.	T	.	.	PASS	END=94467280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	94467281	.	C	.	.	PASS	END=94467285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	94467286	.	C	.	.	PASS	END=94467290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	94467291	.	A	.	.	PASS	END=94467294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	94467295	.	G	.	.	PASS	END=94467314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	94467315	.	G	.	.	PASS	END=94467336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	94467337	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:60
chr1	94467338	.	C	.	.	PASS	END=94467343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	94467344	.	A	.	.	PASS	END=94467351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	94467352	.	C	.	.	PASS	END=94467356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	94467357	.	A	.	.	PASS	END=94467366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	94467367	.	C	.	.	PASS	END=94467395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr1	94467396	.	G	.	.	PASS	END=94467403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	94467404	.	C	.	.	PASS	END=94467405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:55:60
chr1	94467406	.	G	.	.	PASS	END=94467460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	94467461	.	G	.	.	PASS	END=94467526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	94467527	.	T	.	.	PASS	END=94467576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	94467577	.	A	.	.	PASS	END=94467598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	94467599	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:69:60
chr1	94470946	.	A	.	.	PASS	END=94470952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	94470953	.	T	.	.	PASS	END=94470978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	94470979	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:60:60
chr1	94470980	.	A	.	.	PASS	END=94470991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	94470992	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:68:60
chr1	94470993	.	T	.	.	PASS	END=94471021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	94471022	.	C	.	.	PASS	END=94471041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:81:60
chr1	94471042	.	G	.	.	PASS	END=94471074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	94471075	.	A	G	2159.90	PASS	DP=79;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;QD=27.34;SB=-1122.91	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,79:79:99:2193,166,0:60:99:1.000
chr1	94471076	.	A	.	.	PASS	END=94471108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	94471109	.	T	.	.	PASS	END=94471153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	94471154	.	C	T	459.37	PASS	BaseQRankSum=1.183;DP=47;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.8925;MQ=60;MQ0=0;MQRankSum=1.344;QD=9.77;ReadPosRankSum=0.241;SB=-176.96	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,19:47:99:489,0,705:60:99:0.422
chr1	94471155	.	A	.	.	PASS	END=94471176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	94471177	.	A	.	.	PASS	END=94471186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	94471187	.	T	.	.	PASS	END=94471189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	94473139	.	C	.	.	PASS	END=94473147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	94473148	.	C	.	.	PASS	END=94473171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	94473172	.	G	.	.	PASS	END=94473199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	94473200	.	C	.	.	PASS	END=94473208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	94473209	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:73:60
chr1	94473210	.	A	.	.	PASS	END=94473219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	94473220	.	G	.	.	PASS	END=94473296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	94473297	.	C	.	.	PASS	END=94473323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	94473324	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:42:60
chr1	94473325	.	C	.	.	PASS	END=94473347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:84:60
chr1	94473740	.	A	.	.	PASS	END=94473756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	94473757	.	G	.	.	PASS	END=94473760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	94473761	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:24:60
chr1	94473762	.	C	.	.	PASS	END=94473765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	94473766	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:24:60
chr1	94473767	.	A	.	.	PASS	END=94473772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr1	94473773	.	G	.	.	PASS	END=94473784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	94473785	.	A	.	.	PASS	END=94473810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	94473811	.	C	.	.	PASS	END=94473826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	94473827	.	T	.	.	PASS	END=94473844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	94473845	.	T	C	697.25	PASS	BaseQRankSum=-0.844;DP=90;Dels=0.00;FS=1.906;HRun=2;HaplotypeScore=3.8073;MQ=60;MQ0=0;MQRankSum=0.058;QD=7.75;ReadPosRankSum=0.223;SB=-353.43	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:55,35:90:99:727,0,1441:60:99:0.389
chr1	94473846	.	G	.	.	PASS	END=94473863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	94473864	.	C	T	729.79	PASS	BaseQRankSum=2.693;DP=97;Dels=0.00;FS=1.757;HRun=0;HaplotypeScore=8.5745;MQ=60;MQ0=0;MQRankSum=-0.560;QD=7.52;ReadPosRankSum=0.304;SB=-483.43	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:62,35:97:99:760,0,1416:60:99:0.361
chr1	94473865	.	G	.	.	PASS	END=94473895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	94473896	.	G	T	603.58	PASS	BaseQRankSum=2.459;DP=82;Dels=0.00;FS=8.079;HRun=1;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=-0.328;QD=7.36;ReadPosRankSum=-0.298;SB=-267.68	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:54,28:82:99:634,0,1107:60:99:0.341
chr1	94473897	.	A	.	.	PASS	END=94473904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	94474256	.	T	.	.	PASS	END=94474266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	94474267	.	G	.	.	PASS	END=94474278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	94474279	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:75:60
chr1	94474280	.	C	.	.	PASS	END=94474299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:80:60
chr1	94474300	.	C	.	.	PASS	END=94474317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:93:60
chr1	94474318	.	C	.	.	PASS	END=94474327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	94474328	.	T	C	839.69	PASS	BaseQRankSum=0.298;DP=85;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=-0.787;QD=9.88;ReadPosRankSum=1.863;SB=-501.93	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:49,36:85:99:870,0,1111:60:99:0.424
chr1	94474329	.	A	.	.	PASS	END=94474418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	94474419	.	T	.	.	PASS	END=94474448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	94474449	.	G	.	.	PASS	END=94474451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	94474452	.	T	G	520.84	PASS	BaseQRankSum=0.252;DP=54;Dels=0.00;FS=1.304;HRun=0;HaplotypeScore=4.7771;MQ=60;MQ0=0;MQRankSum=-0.305;QD=9.65;ReadPosRankSum=1.192;SB=-177.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,24:54:99:551,0,824:60:99:0.444
chr1	94474453	.	T	.	.	PASS	END=94474457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	94474458	.	T	.	.	PASS	END=94474468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	94474469	.	T	.	.	PASS	END=94474478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	94476180	.	T	.	.	LowGQX	END=94476213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	94476214	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	94476215	.	T	.	.	LowGQX	END=94476219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	94476220	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	94476221	.	A	.	.	LowGQX	END=94476242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	94476243	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	94476244	.	G	.	.	LowGQX	END=94476252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	94476253	.	T	.	.	LowGQX	END=94476258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	94476259	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	94476260	.	G	.	.	LowGQX	END=94476279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	94476305	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	94476306	.	T	.	.	LowGQX	END=94476310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	94476311	.	G	.	.	PASS	END=94476319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	94476320	.	A	.	.	PASS	END=94476330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	94476331	.	G	.	.	PASS	END=94476337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	94476338	.	G	.	.	PASS	END=94476344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	94476345	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:42:60
chr1	94476346	.	A	.	.	PASS	END=94476351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	94476352	.	G	.	.	PASS	END=94476360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	94476361	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:67:60
chr1	94476362	.	G	.	.	PASS	END=94476383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	94476384	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:75:60
chr1	94476385	.	C	.	.	PASS	END=94476387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	94476388	.	C	G	575.17	PASS	BaseQRankSum=0.762;DP=52;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.8404;MQ=60;MQ0=0;MQRankSum=-0.229;QD=11.06;ReadPosRankSum=-0.431;SB=-152.36	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,24:52:99:605,0,780:60:99:0.462
chr1	94476389	.	A	.	.	PASS	END=94476395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	94476396	.	G	.	.	PASS	END=94476413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	94476414	.	C	.	.	PASS	END=94476488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	94476489	.	G	.	.	PASS	END=94476536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:96:60
chr1	94476767	.	C	.	.	PASS	END=94476787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	94476788	.	C	.	.	PASS	END=94476837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	94476838	.	G	.	.	PASS	END=94476920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	94476921	.	G	.	.	PASS	END=94476941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	94476942	.	C	.	.	PASS	END=94476971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	94476972	.	G	.	.	PASS	END=94476991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:79:60
chr1	94476991	.	CT	C	640.88	PASS	BaseQRankSum=-0.582;DP=49;FS=4.408;HRun=1;HaplotypeScore=126.3316;MQ=60;MQ0=0;MQRankSum=-0.994;QD=13.08;ReadPosRankSum=-1.016;SB=-26.41	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:27,20:49:99:680,0,911:60:99:0.426
chr1	94476992	.	T	.	93.19	PASS	DP=47;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:27:27:63.19:60:63
chr1	94480048	.	T	.	.	PASS	END=94480105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	94480106	.	T	.	.	PASS	END=94480184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	94480185	.	A	.	.	PASS	END=94480198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	94480199	.	A	.	.	PASS	END=94480247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	94480248	.	T	.	.	PASS	END=94480279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	94480280	.	T	.	.	PASS	END=94480284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	94480285	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:63:60
chr1	94480286	.	A	.	.	PASS	END=94480297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	94481244	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:36:60
chr1	94481245	.	A	.	19.39	LowGQX	DP=12;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:12:0.36:60:0
chr1	94481246	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	94481247	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	94481248	.	A	.	22.37	LowGQX	DP=12;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:9:12:0.69:60:1
chr1	94481249	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	94481250	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	94481251	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr1	94481252	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:12:60
chr1	94481253	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr1	94481254	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	94481255	.	T	.	12.19	LowGQX	DP=12;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:12:0.07:60:0
chr1	94481256	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	94481257	.	C	.	.	LowGQX	END=94481258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:15:60
chr1	94481259	.	C	.	.	LowGQX	END=94481260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	94481261	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:60
chr1	94481262	.	C	.	.	LowGQX	END=94481264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:60
chr1	94481265	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:15:60
chr1	94481266	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	94481267	.	G	.	.	PASS	END=94481268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	94481269	.	A	.	.	LowGQX	END=94481270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr1	94481271	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	94481272	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	94481273	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	94481274	.	C	.	.	PASS	END=94481279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	94481280	.	G	.	.	PASS	END=94481289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	94481290	.	C	.	.	PASS	END=94481295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	94481296	.	C	.	.	PASS	END=94481302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	94481303	.	C	.	.	PASS	END=94481313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	94481314	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:72:60
chr1	94481315	.	C	.	.	PASS	END=94481316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	94481317	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:72:60
chr1	94481318	.	A	.	.	PASS	END=94481342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	94481343	.	G	.	.	PASS	END=94481454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:81:60
chr1	94481455	.	T	.	.	PASS	END=94481461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	94484083	.	A	.	.	LowGQX	END=94484182	GT	./.
chr1	94485087	.	C	.	.	PASS	END=94485090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	94485091	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:48:60
chr1	94485092	.	C	.	.	PASS	END=94485118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	94485119	.	G	.	.	PASS	END=94485144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	94485145	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:55:60
chr1	94485146	.	A	.	.	PASS	END=94485163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	94485164	.	A	.	.	PASS	END=94485181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	94485182	.	C	.	.	PASS	END=94485291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:85:60
chr1	94485292	.	A	.	.	PASS	END=94485314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	94485315	.	C	.	.	PASS	END=94485324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	94485325	.	G	.	.	PASS	END=94485327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	94485328	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:33:60
chr1	94485329	.	A	.	.	PASS	END=94485342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	94485343	.	A	.	.	PASS	END=94485366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	94486745	.	G	.	.	PASS	END=94486773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	94486774	.	G	.	.	PASS	END=94486793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	94486794	.	A	.	.	PASS	END=94486820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	94486821	.	T	.	.	PASS	END=94486943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	94486944	.	A	.	.	PASS	END=94486971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	94486972	.	G	.	.	PASS	END=94487002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	94487003	.	C	.	.	PASS	END=94487016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	94487145	.	C	.	.	PASS	END=94487175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	94487176	.	A	.	.	PASS	END=94487252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	94487253	.	C	.	.	PASS	END=94487321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	94487351	.	G	.	.	PASS	END=94487353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	94487354	.	G	A	3536.38	PASS	DP=108;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=8.5727;MQ=60;MQ0=0;QD=32.74;SB=-850.80	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,108:108:99:3536,271,0:60:99:1.000
chr1	94487355	.	T	.	.	PASS	END=94487430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	94487431	.	C	.	.	PASS	END=94487512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	94487513	.	A	.	.	PASS	END=94487541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	94487542	.	C	.	.	PASS	END=94487558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	94488891	.	T	.	.	PASS	END=94489005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	94489006	.	A	.	.	PASS	END=94489019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	94489020	.	A	.	.	PASS	END=94489027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	94490459	.	A	.	.	PASS	END=94490475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	94490476	.	C	.	.	PASS	END=94490517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	94490518	.	T	.	.	PASS	END=94490596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:87:60
chr1	94490597	.	T	.	.	PASS	END=94490610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	94490611	.	C	.	.	PASS	END=94490633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:59
chr1	94490634	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:90:59
chr1	94490635	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:45:59
chr1	94490636	.	T	.	.	PASS	END=94490655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:59
chr1	94494950	.	G	.	.	PASS	END=94494963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	94494964	.	G	.	.	PASS	END=94494968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	94494969	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:12:60
chr1	94494970	.	C	.	.	PASS	END=94494983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	94494984	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:84:60
chr1	94494985	.	T	.	.	PASS	END=94494999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	94495000	.	C	.	.	PASS	END=94495013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	94495014	.	A	.	.	PASS	END=94495029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	94495030	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:66:60
chr1	94495031	.	G	.	.	PASS	END=94495033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	94495034	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:69:60
chr1	94495035	.	C	.	.	PASS	END=94495064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	94495065	.	G	.	.	PASS	END=94495162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	94495163	.	T	.	.	PASS	END=94495186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	94495187	.	C	.	.	PASS	END=94495211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	94495212	.	C	.	.	PASS	END=94495226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	94495227	.	A	.	.	PASS	END=94495228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	94495229	.	T	.	.	PASS	END=94495238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	94495933	.	G	.	.	PASS	END=94495937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	94495938	.	C	.	.	PASS	END=94495970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	94495971	.	C	.	.	PASS	END=94496088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	94496089	.	A	.	.	PASS	END=94496121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	94496122	.	C	.	.	PASS	END=94496133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	94496501	.	C	.	.	PASS	END=94496504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	94496505	.	G	.	.	LowGQX	END=94496506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	94496507	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:2:60
chr1	94496508	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	94496509	.	C	.	.	PASS	END=94496519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	94496520	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:2:60
chr1	94496521	.	A	.	.	PASS	END=94496523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	94496524	.	G	.	.	PASS	END=94496539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	94496540	.	G	.	.	PASS	END=94496550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	94496551	.	C	.	.	PASS	END=94496573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	94496574	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:61:60
chr1	94496575	.	A	.	.	PASS	END=94496609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	94496610	.	C	.	.	PASS	END=94496674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:81:60
chr1	94496675	.	A	.	.	PASS	END=94496707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	94496708	.	C	.	.	PASS	END=94496727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	94497283	.	G	.	.	PASS	END=94497298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	94497299	.	A	.	.	PASS	END=94497319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	94497320	.	A	.	.	PASS	END=94497358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	94497359	.	C	.	.	PASS	END=94497448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	94497449	.	T	.	.	PASS	END=94497470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	94497471	.	C	.	.	PASS	END=94497546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	94497547	.	A	.	.	PASS	END=94497596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	94497597	.	C	.	.	PASS	END=94497644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	94497645	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:51:60
chr1	94497646	.	C	.	.	PASS	END=94497650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	94502245	.	A	.	.	PASS	END=94502267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	94502268	.	G	.	.	PASS	END=94502281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	94502282	.	C	.	.	PASS	END=94502319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	94502320	.	A	.	.	PASS	END=94502395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:93:60
chr1	94502650	.	G	.	.	PASS	END=94502651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	94502652	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	94502653	.	C	.	.	PASS	END=94502659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	94502660	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	94502661	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	94502662	.	C	.	.	LowGQX	END=94502663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	94502664	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	94502665	.	G	.	.	LowGQX	END=94502667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	94502668	.	C	.	.	PASS	END=94502686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	94502687	.	A	.	.	PASS	END=94502701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	94502702	.	T	.	.	PASS	END=94502704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	94502705	.	T	.	.	PASS	END=94502716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	94502717	.	T	.	.	PASS	END=94502720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	94502721	.	A	.	.	PASS	END=94502734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	94502735	.	C	.	.	PASS	END=94502743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	94502744	.	A	.	.	PASS	END=94502757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	94502758	.	C	.	.	PASS	END=94502781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:83:60
chr1	94502782	.	G	.	.	PASS	END=94502800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	94502801	.	A	.	.	PASS	END=94502885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	94502886	.	C	.	.	PASS	END=94502892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	94502893	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:69:60
chr1	94502894	.	T	.	.	PASS	END=94502913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	94502914	.	A	.	.	PASS	END=94502927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	94502928	.	A	.	.	PASS	END=94502937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	94502938	.	T	.	.	PASS	END=94502957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	94505548	.	C	.	.	PASS	END=94505575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:84:60
chr1	94505576	.	A	.	.	PASS	END=94505599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	94505600	.	A	.	.	PASS	END=94505689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	94505690	.	C	.	.	PASS	END=94505733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:89:60
chr1	94505734	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:99:60
chr1	94506714	.	T	.	.	PASS	END=94506728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	94506729	.	A	.	.	PASS	END=94506751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	94506752	.	G	.	.	PASS	END=94506783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	94506784	.	C	.	.	PASS	END=94506895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:279:99:60
chr1	94506896	.	C	.	.	PASS	END=94506926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	94506927	.	C	.	.	PASS	END=94506955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	94506956	.	T	.	.	PASS	END=94506969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	94506970	.	G	.	.	PASS	END=94506991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	94506992	.	T	.	.	PASS	END=94507001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	94507002	.	T	.	.	PASS	END=94507009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	94508266	.	G	.	.	PASS	END=94508277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr1	94508278	.	G	.	.	PASS	END=94508294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	94508295	.	G	.	.	PASS	END=94508326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	94508327	.	C	.	.	PASS	END=94508358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	94508359	.	A	.	.	PASS	END=94508477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	94508478	.	G	.	.	PASS	END=94508499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	94508500	.	G	.	.	PASS	END=94508505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	94508841	.	G	.	.	PASS	END=94508856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	94508857	.	C	.	.	PASS	END=94508870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	94508871	.	T	.	.	PASS	END=94508893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	94508894	.	G	.	.	PASS	END=94508972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	94508973	.	C	.	.	PASS	END=94509009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	94509010	.	C	.	.	PASS	END=94509032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	94509033	.	T	.	.	PASS	END=94509046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	94509047	.	A	.	.	PASS	END=94509074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:86:60
chr1	94509075	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:74:60
chr1	94509076	.	A	.	.	PASS	END=94509082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	94510118	.	G	.	.	PASS	END=94510128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	94510129	.	G	.	.	PASS	END=94510147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	94510148	.	C	.	.	PASS	END=94510182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	94510183	.	G	.	.	PASS	END=94510222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	94510223	.	T	.	.	PASS	END=94510316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	94510317	.	T	.	.	PASS	END=94510351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	94511277	.	A	.	.	LowGQX	END=94511521	GT	./.
chr1	94512424	.	C	.	.	PASS	END=94512436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:59
chr1	94512437	.	G	.	.	PASS	END=94512441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	94512442	.	C	.	.	PASS	END=94512446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	94512447	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:60
chr1	94512448	.	A	.	.	PASS	END=94512465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	94512466	.	A	.	.	PASS	END=94512490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	94512491	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:69:60
chr1	94512492	.	A	.	.	PASS	END=94512531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:78:60
chr1	94512532	.	T	.	.	PASS	END=94512551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	94512552	.	G	.	.	PASS	END=94512564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	94512565	.	C	T	876.32	PASS	BaseQRankSum=1.959;DP=92;Dels=0.00;FS=3.025;HRun=0;HaplotypeScore=8.5750;MQ=60;MQ0=0;MQRankSum=-0.379;QD=9.53;ReadPosRankSum=-0.237;SB=-350.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:53,39:92:99:906,0,1290:60:99:0.424
chr1	94512566	.	G	.	.	PASS	END=94512646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	94512647	.	A	.	.	PASS	END=94512692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	94512693	.	T	.	.	PASS	END=94512700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:78:60
chr1	94514373	.	G	.	.	PASS	END=94514399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	94514400	.	G	.	.	PASS	END=94514488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	94514489	.	G	.	.	PASS	END=94514535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	94514536	.	T	.	.	PASS	END=94514564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	94517138	.	A	.	.	PASS	END=94517153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	94517154	.	T	.	.	PASS	END=94517193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	94517194	.	C	.	.	PASS	END=94517253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	94517254	.	C	G	896.70	PASS	BaseQRankSum=1.264;DP=91;Dels=0.00;FS=0.828;HRun=0;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=0.932;QD=9.85;ReadPosRankSum=0.648;SB=-560.48	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:49,41:91:99:927,0,1170:60:99:0.456
chr1	94517255	.	C	.	.	PASS	END=94517289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	94517290	.	G	.	.	PASS	END=94517305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	94520616	.	T	.	.	LowGQX	END=94520630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	94520631	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	94520632	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	94520633	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:0:60
chr1	94520634	.	A	.	.	PASS	END=94520646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	94520647	.	C	.	.	PASS	END=94520658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	94520659	.	A	.	.	PASS	END=94520672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	94520673	.	A	.	.	PASS	END=94520674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:65:60
chr1	94520675	.	A	.	.	PASS	END=94520700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	94520701	.	G	.	.	PASS	END=94520794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:91:60
chr1	94520795	.	T	.	.	PASS	END=94520797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	94520798	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:74:60
chr1	94520799	.	G	.	.	PASS	END=94520806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	94520807	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:74:60
chr1	94520808	.	C	.	.	PASS	END=94520832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	94520833	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:66:60
chr1	94520834	.	T	.	.	PASS	END=94520864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	94520865	.	G	.	.	PASS	END=94520878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	94520879	.	G	.	.	PASS	END=94520889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	94520890	.	G	.	.	PASS	END=94520900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	94520901	.	A	.	.	PASS	END=94520903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	94520904	.	G	.	.	PASS	END=94520909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	94520910	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:21:60
chr1	94520911	.	C	.	.	PASS	END=94520922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	94522106	.	A	.	.	PASS	END=94522124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	94522125	.	T	.	.	PASS	END=94522143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	94522144	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:99:60
chr1	94522145	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:69:60
chr1	94522146	.	A	.	.	PASS	END=94522163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	94522164	.	T	.	.	PASS	END=94522202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	94522203	.	C	.	.	PASS	END=94522241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	94522242	.	C	.	.	PASS	END=94522340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	94522341	.	A	.	.	PASS	END=94522365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	94522366	.	G	.	.	PASS	END=94522392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	94522393	.	C	.	.	PASS	END=94522405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	94522406	.	A	.	.	PASS	END=94522420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr1	94522421	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:60
chr1	94522422	.	G	.	.	PASS	END=94522424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	94522425	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:57:60
chr1	94522426	.	G	.	.	PASS	END=94522427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr1	94522428	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:60:60
chr1	94522429	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:90:60
chr1	94526042	.	G	.	.	PASS	END=94526043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:96:60
chr1	94526044	.	A	G	376.67	SB	BaseQRankSum=0.856;DP=33;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=0.055;QD=11.41;ReadPosRankSum=-0.018;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:19,14:33:99:407,0,569:60:99:0.424
chr1	94526045	.	A	.	.	PASS	END=94526068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	94526069	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:69:60
chr1	94526070	.	T	.	.	PASS	END=94526089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	94526090	.	T	.	.	PASS	END=94526104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	94526105	.	C	.	.	PASS	END=94526124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	94526125	.	T	.	.	PASS	END=94526198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	94526199	.	G	.	.	PASS	END=94526264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	94526265	.	C	.	.	PASS	END=94526294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	94526295	.	C	.	.	PASS	END=94526324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	94526325	.	A	.	.	PASS	END=94526349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	94526350	.	G	.	.	PASS	END=94526360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	94526361	.	G	.	.	PASS	END=94526363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	94526364	.	A	.	.	PASS	END=94526366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	94528082	.	C	.	.	LowGQX	END=94528086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	94528087	.	C	.	.	LowGQX	END=94528088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	94528089	.	C	.	.	PASS	END=94528096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	94528097	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:2:60
chr1	94528098	.	G	.	.	PASS	END=94528099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	94528100	.	G	.	.	PASS	END=94528114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	94528115	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:12:60
chr1	94528116	.	G	.	.	PASS	END=94528118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	94528119	.	A	.	.	PASS	END=94528120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	94528121	.	C	.	.	PASS	END=94528127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	94528128	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:60:60
chr1	94528129	.	T	.	.	PASS	END=94528137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:59
chr1	94528138	.	G	.	.	PASS	END=94528140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:59
chr1	94528141	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:27:59
chr1	94528142	.	A	.	.	PASS	END=94528147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:59
chr1	94528148	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:36:60
chr1	94528149	.	A	.	.	PASS	END=94528152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	94528153	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:45:60
chr1	94528154	.	T	.	.	PASS	END=94528175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	94528176	.	T	.	.	PASS	END=94528197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	94528198	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:72:60
chr1	94528199	.	A	.	.	PASS	END=94528212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	94528213	.	G	.	.	PASS	END=94528307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:91:60
chr1	94528308	.	A	.	.	PASS	END=94528335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	94528336	.	T	.	.	PASS	END=94528352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	94528353	.	A	.	.	PASS	END=94528360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	94528617	.	A	.	.	PASS	END=94528689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	94528690	.	T	.	.	PASS	END=94528711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	94528712	.	T	.	.	PASS	END=94528737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	94528738	.	G	.	.	PASS	END=94528849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	94528850	.	T	.	.	PASS	END=94528867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	94528868	.	C	.	.	PASS	END=94528879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	94528880	.	A	.	.	PASS	END=94528889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	94528890	.	A	.	.	PASS	END=94528905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	94528906	.	G	.	.	PASS	END=94528908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	94528909	.	G	.	.	PASS	END=94528921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	94528922	.	A	.	.	PASS	END=94528924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	94543195	.	A	.	.	PASS	END=94543196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:30:60
chr1	94543197	.	T	.	.	PASS	END=94543202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	94543203	.	G	.	.	PASS	END=94543207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	94543208	.	T	.	.	PASS	END=94543221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	94543222	.	A	.	.	PASS	END=94543225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	94543226	.	T	.	.	PASS	END=94543236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	94543237	.	G	.	.	PASS	END=94543250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	94543251	.	G	.	.	PASS	END=94543272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	94543273	.	G	.	.	PASS	END=94543294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	94543295	.	A	.	.	PASS	END=94543368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	94543369	.	G	.	.	PASS	END=94543440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	94543441	.	A	.	.	PASS	END=94543482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	94543483	.	T	.	.	PASS	END=94543494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	94544095	.	C	.	.	LowGQX	END=94544096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	94544097	.	C	.	.	LowGQX	END=94544099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	94544100	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:60
chr1	94544101	.	C	.	.	LowGQX	END=94544104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	94544105	.	T	.	.	LowGQX	END=94544106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:60
chr1	94544107	.	C	.	.	LowGQX	END=94544108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	94544109	.	T	.	36.01	LowGQX	DP=6;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:6:6.02:60:6
chr1	94544110	.	C	.	.	LowGQX	END=94544111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	94544112	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr1	94544113	.	C	.	.	LowGQX	END=94544114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	94544115	.	C	.	.	LowGQX	END=94544116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	94544117	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	94544118	.	C	.	.	LowGQX	END=94544125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	94544126	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:0:60
chr1	94544127	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	94544128	.	T	.	.	PASS	END=94544135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	94544135	.	A	AC	150.69	PASS	BaseQRankSum=-0.741;DP=16;FS=0.000;HRun=6;HaplotypeScore=114.8073;MQ=60;MQ0=0;MQRankSum=2.117;QD=9.42;ReadPosRankSum=-0.318;SB=-77.90	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:9,7:16:99:190,0,258:60:99:0.438
chr1	94544136	.	C	.	.	PASS	END=94544138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	94544139	.	C	.	.	PASS	END=94544160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	94544161	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:75:60
chr1	94544162	.	T	.	.	PASS	END=94544182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	94544183	.	T	.	.	PASS	END=94544201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	94544202	.	C	.	.	PASS	END=94544275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	94544276	.	G	A	879.22	PASS	BaseQRankSum=1.148;DP=93;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=11.4685;MQ=60;MQ0=0;MQRankSum=0.592;QD=9.45;ReadPosRankSum=-1.013;SB=-647.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:47,44:93:99:909,0,1202:60:99:0.484
chr1	94544277	.	A	.	.	PASS	END=94544289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	94544290	.	G	.	.	PASS	END=94544313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	94544827	.	A	.	.	PASS	END=94544829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	94544830	.	C	.	.	PASS	END=94544843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	94544844	.	A	.	.	PASS	END=94544865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	94544866	.	C	.	.	PASS	END=94544911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	94544912	.	G	.	.	PASS	END=94544936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	94544937	.	G	.	.	PASS	END=94544983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	94544984	.	T	.	.	PASS	END=94545044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	94545045	.	C	.	.	PASS	END=94545068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	94545983	.	A	.	.	PASS	END=94546001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	94546002	.	G	.	.	PASS	END=94546043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	94546044	.	G	.	.	PASS	END=94546082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:90:60
chr1	94546083	.	C	.	.	PASS	END=94546105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	94546106	.	T	.	.	PASS	END=94546201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	94546202	.	T	.	.	PASS	END=94546212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	94546213	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:75:75:60
chr1	94546214	.	C	.	.	PASS	END=94546230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	94546231	.	C	.	.	PASS	END=94546249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	94546250	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:67:60
chr1	94546251	.	C	.	.	PASS	END=94546266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	94546267	.	T	.	.	PASS	END=94546278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	94546279	.	G	.	.	PASS	END=94546290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	94546291	.	T	.	.	PASS	END=94546301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	94546302	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:29:60
chr1	94546303	.	T	.	.	PASS	END=94546325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	94548857	.	A	.	.	PASS	END=94548908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	94548909	.	T	.	.	PASS	END=94548977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	94548978	.	C	.	.	PASS	END=94548998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:97:60
chr1	94548999	.	T	.	.	PASS	END=94549037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	94549038	.	T	.	.	PASS	END=94549048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	94564299	.	C	.	.	PASS	END=94564342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	94564343	.	C	.	.	PASS	END=94564393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	94564394	.	C	.	.	PASS	END=94564423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	94564424	.	G	.	.	PASS	END=94564443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	94564444	.	A	.	.	PASS	END=94564456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	94564457	.	C	.	.	PASS	END=94564493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	94564494	.	G	.	.	PASS	END=94564527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	94564528	.	T	.	.	PASS	END=94564529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:63:60
chr1	94564530	.	C	.	.	PASS	END=94564536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	94564537	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:30:60
chr1	94564538	.	C	.	.	PASS	END=94564558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	94564559	.	A	.	.	PASS	END=94564586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	94564587	.	T	.	.	PASS	END=94564592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:60
chr1	94564593	.	A	.	.	PASS	END=94564598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	94568520	.	C	.	.	PASS	END=94568528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	94568529	.	T	.	.	PASS	END=94568536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	94568537	.	C	.	.	PASS	END=94568548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	94568549	.	C	.	.	PASS	END=94568556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	94568557	.	T	.	.	PASS	END=94568572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	94568573	.	G	.	.	PASS	END=94568585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	94568586	.	T	.	.	PASS	END=94568608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	94568609	.	C	.	.	PASS	END=94568723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	94568724	.	G	.	.	PASS	END=94568749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	94574082	.	C	.	.	PASS	END=94574083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	94574084	.	C	.	.	PASS	END=94574103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	94574104	.	A	.	.	PASS	END=94574118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	94574119	.	G	.	.	PASS	END=94574151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	94574152	.	A	.	.	PASS	END=94574184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	94574185	.	G	.	.	PASS	END=94574291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	94574292	.	T	.	.	PASS	END=94574323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	94576943	.	T	.	.	PASS	END=94576965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	94576966	.	C	.	.	PASS	END=94576967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	94576968	.	T	C	1029.59	PASS	BaseQRankSum=-0.941;DP=87;Dels=0.00;FS=0.889;HRun=4;HaplotypeScore=8.7333;MQ=60;MQ0=0;MQRankSum=0.592;QD=11.83;ReadPosRankSum=-1.895;SB=-467.98	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:40,47:87:99:1060,0,948:60:99:0.540
chr1	94576969	.	G	.	.	PASS	END=94577001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	94577002	.	G	.	.	PASS	END=94577077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	94577078	.	A	.	.	PASS	END=94577106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	94577107	.	T	.	.	PASS	END=94577125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	94577126	.	G	.	.	PASS	END=94577167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	94577168	.	T	.	.	PASS	END=94577178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr1	94577179	.	A	.	.	PASS	END=94577186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	94578478	.	C	.	.	PASS	END=94578492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	94578493	.	C	.	.	PASS	END=94578512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	94578513	.	A	.	.	PASS	END=94578522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	94578523	.	G	.	.	PASS	END=94578539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	94578540	.	C	.	.	PASS	END=94578547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	94578548	.	T	C	2430.73	PASS	DP=87;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.6815;MQ=60;MQ0=0;QD=27.94;SB=-661.49	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,86:87:99:2464,190,0:60:99:1.000
chr1	94578549	.	G	.	.	PASS	END=94578565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	94578566	.	C	.	.	PASS	END=94578673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	94586479	.	T	.	.	PASS	END=94586489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	94586490	.	T	.	.	PASS	END=94586510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	94586511	.	T	.	.	PASS	END=94586528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	94586529	.	C	.	.	PASS	END=94586621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:59
chr1	94586622	.	C	.	.	PASS	END=94586641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:59
chr1	94586642	.	C	.	.	PASS	END=94586652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:59
chr1	94620128	.	T	.	.	LowGQX	END=94620147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94620148	.	T	.	.	LowGQX	END=94620149	GT	./.
chr1	94620150	.	A	.	.	LowGQX	END=94620154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94620155	.	C	.	.	LowGQX	END=94620156	GT	./.
chr1	94620157	.	G	.	.	LowGQX	END=94620220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94620221	.	G	.	.	LowGQX	.	GT	./.
chr1	94620222	.	A	.	.	LowGQX	END=94620227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94639423	.	C	.	.	LowGQX	END=94639767	GT	./.
chr1	94639768	.	G	.	.	LowGQX	END=94639792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94639793	.	C	.	.	LowGQX	.	GT	./.
chr1	94639794	.	A	.	.	LowGQX	END=94639809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94639810	.	G	.	.	LowGQX	.	GT	./.
chr1	94639811	.	A	.	.	LowGQX	END=94639816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94639817	.	C	.	.	LowGQX	.	GT	./.
chr1	94639818	.	T	.	.	LowGQX	END=94639842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94639843	.	T	.	.	LowGQX	END=94639898	GT	./.
chr1	94639899	.	T	.	.	LowGQX	END=94640188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94640189	.	T	.	.	LowGQX	END=94640307	GT	./.
chr1	94643160	.	C	.	.	LowGQX	END=94643278	GT	./.
chr1	94643406	.	A	.	.	LowGQX	END=94643725	GT	./.
chr1	94645279	.	A	.	.	LowGQX	END=94645515	GT	./.
chr1	94649665	.	G	.	.	LowGQX	END=94649846	GT	./.
chr1	94650426	.	A	.	.	LowGQX	END=94650618	GT	./.
chr1	94650896	.	A	.	.	LowGQX	END=94650897	GT	./.
chr1	94650898	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94650899	.	T	.	.	LowGQX	.	GT	./.
chr1	94650900	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94650901	.	T	.	.	LowGQX	.	GT	./.
chr1	94650902	.	T	.	.	LowGQX	END=94650908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94650909	.	C	.	.	LowGQX	.	GT	./.
chr1	94650910	.	A	.	.	LowGQX	END=94650912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94650913	.	A	.	.	LowGQX	.	GT	./.
chr1	94650914	.	C	.	.	LowGQX	END=94650924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94650925	.	T	.	.	LowGQX	END=94650926	GT	./.
chr1	94650927	.	C	.	.	LowGQX	END=94650929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94650930	.	T	.	.	LowGQX	END=94650932	GT	./.
chr1	94650933	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94650934	.	T	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	94650935	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94650936	.	C	.	.	LowGQX	.	GT	./.
chr1	94650937	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94650938	.	C	.	.	LowGQX	END=94650939	GT	./.
chr1	94650940	.	A	.	.	LowGQX	END=94650941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94650942	.	C	.	.	LowGQX	.	GT	./.
chr1	94650943	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94650944	.	C	.	.	LowGQX	.	GT	./.
chr1	94650945	.	T	.	.	LowGQX	END=94650946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94650947	.	C	.	.	LowGQX	.	GT	./.
chr1	94650948	.	A	.	.	LowGQX	END=94650951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94650952	.	C	.	.	LowGQX	.	GT	./.
chr1	94650953	.	G	.	.	LowGQX	END=94650960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94650961	.	T	.	.	LowGQX	.	GT	./.
chr1	94650962	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94650963	.	T	.	.	LowGQX	.	GT	./.
chr1	94650964	.	C	.	.	LowGQX	END=94651000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94651001	.	A	.	.	LowGQX	END=94651039	GT	./.
chr1	94652053	.	A	.	.	LowGQX	END=94652155	GT	./.
chr1	94654391	.	A	.	.	LowGQX	END=94654499	GT	./.
chr1	94654770	.	A	.	.	LowGQX	END=94654910	GT	./.
chr1	94655450	.	T	.	.	LowGQX	END=94655641	GT	./.
chr1	94667234	.	G	.	.	LowGQX	END=94667412	GT	./.
chr1	94667413	.	C	.	.	LowGQX	END=94667415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94668060	.	G	.	.	LowGQX	END=94668108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94668109	.	A	.	.	LowGQX	END=94668290	GT	./.
chr1	94668465	.	A	.	.	LowGQX	END=94668564	GT	./.
chr1	94668654	.	A	.	.	LowGQX	END=94668768	GT	./.
chr1	94669469	.	G	.	.	LowGQX	END=94669568	GT	./.
chr1	94670615	.	A	.	.	LowGQX	END=94670756	GT	./.
chr1	94671166	.	A	.	.	LowGQX	END=94671173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94671174	.	A	.	.	LowGQX	.	GT	./.
chr1	94671175	.	A	.	.	LowGQX	END=94671182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94671183	.	A	.	.	LowGQX	.	GT	./.
chr1	94671184	.	G	.	.	LowGQX	END=94671190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94671191	.	C	.	.	LowGQX	.	GT	./.
chr1	94671192	.	T	.	.	LowGQX	END=94671220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94671221	.	C	.	.	LowGQX	.	GT	./.
chr1	94671222	.	A	.	.	LowGQX	END=94671244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94671245	.	A	.	.	LowGQX	.	GT	./.
chr1	94671246	.	A	.	.	LowGQX	END=94671252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94671253	.	A	.	.	LowGQX	.	GT	./.
chr1	94671254	.	A	.	.	LowGQX	END=94671256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94671257	.	G	.	.	LowGQX	.	GT	./.
chr1	94671258	.	A	.	.	LowGQX	END=94671265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94674375	.	A	.	.	LowGQX	END=94674415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94674416	.	A	.	.	LowGQX	.	GT	./.
chr1	94674417	.	A	.	.	LowGQX	END=94674474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94674758	.	T	.	.	LowGQX	END=94674908	GT	./.
chr1	94685772	.	C	.	.	LowGQX	END=94685913	GT	./.
chr1	94685914	.	C	.	.	LowGQX	END=94685950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94696961	.	A	.	.	LowGQX	END=94697169	GT	./.
chr1	94883984	.	G	.	.	PASS	END=94884010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	94884011	.	C	.	.	PASS	END=94884029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	94884030	.	G	.	.	PASS	END=94884157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	94884158	.	T	.	.	PASS	END=94884174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	94884175	.	C	.	.	PASS	END=94884195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:93:60
chr1	94921275	.	T	.	.	LowGQX	END=94921276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94921277	.	C	.	.	LowGQX	.	GT	./.
chr1	94921278	.	C	.	.	LowGQX	END=94921279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94921280	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	94921281	.	T	.	.	LowGQX	END=94921295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	94921296	.	A	.	.	LowGQX	.	GT	./.
chr1	94921297	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94921298	.	G	.	.	LowGQX	END=94921300	GT	./.
chr1	94921301	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94921302	.	A	.	.	LowGQX	END=94921304	GT	./.
chr1	94921305	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94921306	.	G	.	.	LowGQX	END=94921307	GT	./.
chr1	94921308	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94921309	.	G	.	.	LowGQX	END=94921326	GT	./.
chr1	94921327	.	T	.	.	LowGQX	END=94921329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94921330	.	T	.	.	LowGQX	.	GT	./.
chr1	94921331	.	G	.	.	LowGQX	END=94921332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94921333	.	G	.	.	LowGQX	END=94921334	GT	./.
chr1	94921335	.	G	.	.	LowGQX	END=94921336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94921337	.	G	.	.	LowGQX	END=94921338	GT	./.
chr1	94921339	.	T	.	.	LowGQX	END=94921344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94921345	.	A	.	.	LowGQX	END=94921346	GT	./.
chr1	94921347	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94921348	.	A	.	.	LowGQX	.	GT	./.
chr1	94921349	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94921350	.	G	.	.	LowGQX	.	GT	./.
chr1	94921351	.	T	.	.	LowGQX	END=94921353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94921354	.	C	.	.	LowGQX	.	GT	./.
chr1	94921355	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94921356	.	C	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	94921357	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94921358	.	T	.	.	LowGQX	.	GT	./.
chr1	94921359	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94921360	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	94921361	.	G	.	.	LowGQX	END=94921363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94921364	.	G	.	.	LowGQX	END=94921366	GT	./.
chr1	94921367	.	G	.	.	LowGQX	END=94921372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94921373	.	G	.	.	LowGQX	.	GT	./.
chr1	94921374	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	94924111	.	A	.	.	PASS	END=94924189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	94924190	.	G	.	.	PASS	END=94924250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:79:60
chr1	94930280	.	A	.	.	PASS	END=94930310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	94930311	.	G	.	.	PASS	END=94930344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	94930345	.	G	A	1910.51	PASS	BaseQRankSum=1.422;DP=170;Dels=0.00;FS=0.594;HRun=5;HaplotypeScore=19.8853;MQ=60;MQ0=0;MQRankSum=0.826;QD=11.24;ReadPosRankSum=0.907;SB=-1110.59	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:87,83:170:99:1941,0,2117:60:99:0.488
chr1	94930346	.	G	.	.	PASS	END=94930464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	94930465	.	G	.	.	PASS	END=94930480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	94933424	.	T	.	.	PASS	END=94933443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	94933444	.	T	.	.	PASS	END=94933467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	94933468	.	A	.	.	PASS	END=94933481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	94933482	.	A	.	.	PASS	END=94933597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	94933598	.	A	.	.	PASS	END=94933614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	94939271	.	G	.	.	PASS	END=94939298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	94939299	.	G	.	.	PASS	END=94939306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	94939307	.	T	.	.	PASS	END=94939322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	94939323	.	G	.	.	PASS	END=94939376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	94939377	.	G	.	.	PASS	END=94939442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	94940648	.	A	.	.	PASS	END=94940702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	94940703	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:60:60
chr1	94940704	.	T	.	.	PASS	END=94940738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	94940739	.	A	.	.	PASS	END=94940795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	94940796	.	A	.	.	PASS	END=94940847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	94941119	.	T	.	.	PASS	END=94941230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	94941231	.	C	.	.	PASS	END=94941272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	94941273	.	C	.	.	PASS	END=94941306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	94941307	.	C	.	.	PASS	END=94941344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	94943764	.	C	.	.	PASS	END=94943789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	94943790	.	G	.	.	PASS	END=94943872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	94943873	.	T	.	.	PASS	END=94943922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	94944043	.	A	.	.	PASS	END=94944133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	94944134	.	T	.	.	PASS	END=94944142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	94945969	.	T	.	.	PASS	END=94945981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	94945982	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:33:60
chr1	94945983	.	C	.	.	PASS	END=94946013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	94946014	.	T	.	.	PASS	END=94946034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	94946035	.	A	.	.	PASS	END=94946133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	94946134	.	T	.	.	PASS	END=94946178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	94946179	.	T	.	.	PASS	END=94946196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	94946197	.	T	.	.	PASS	END=94946213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	94948675	.	T	.	.	PASS	END=94948757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	94948758	.	G	.	.	PASS	END=94948808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	94948809	.	C	.	.	PASS	END=94948846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	94953047	.	C	.	.	PASS	END=94953118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	94953119	.	A	.	.	PASS	END=94953281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	94953282	.	A	.	.	PASS	END=94953315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	94953316	.	A	.	.	PASS	END=94953386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	94953387	.	A	.	.	PASS	END=94953499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	94953500	.	G	.	.	PASS	END=94953523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	94953524	.	T	.	.	PASS	END=94953552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	94953553	.	T	.	.	PASS	END=94953590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	94955230	.	T	.	.	PASS	END=94955383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	94955384	.	T	.	.	PASS	END=94955512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	94955513	.	T	.	.	PASS	END=94955582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	94956689	.	A	.	.	PASS	END=94956706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	94956707	.	A	.	.	PASS	END=94956744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	94956745	.	A	.	.	PASS	END=94956813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	94956814	.	A	.	.	PASS	END=94956838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	94956839	.	A	.	.	PASS	END=94956854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	94964107	.	A	.	.	PASS	END=94964142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	94964143	.	T	.	.	PASS	END=94964154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	94964155	.	C	.	153.53	PASS	DP=86;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:66:85:99:60:99
chr1	94964156	.	A	.	.	PASS	END=94964178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	94964179	.	C	.	177.47	PASS	DP=85;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:68:85:99:60:99
chr1	94964180	.	T	.	.	PASS	END=94964251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	94964252	.	C	.	.	PASS	END=94964273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	94964274	.	T	.	.	PASS	END=94964283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	94964284	.	G	.	.	PASS	END=94964286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	94964288	.	A	.	.	PASS	END=94964359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	94964360	.	C	.	.	PASS	END=94964409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	94964410	.	A	.	.	PASS	END=94964432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	94964433	.	C	.	.	PASS	END=94964519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	94964520	.	G	.	.	PASS	END=94964615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	94964616	.	C	.	.	PASS	END=94964641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	94965000	.	A	.	.	PASS	END=94965108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	94965109	.	G	.	.	PASS	END=94965128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	94965129	.	T	.	.	PASS	END=94965143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	94965144	.	A	.	.	PASS	END=94965178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:59
chr1	94965179	.	A	.	.	PASS	END=94965182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:59
chr1	94965183	.	T	.	.	PASS	END=94965193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:59
chr1	94965194	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:24:60
chr1	94965195	.	A	.	.	PASS	END=94965202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	94965203	.	G	.	.	PASS	END=94965207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	94965208	.	T	.	.	PASS	END=94965212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	94965213	.	C	.	.	PASS	END=94965221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	94972043	.	T	.	.	PASS	END=94972094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	94972095	.	T	.	.	PASS	END=94972143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	94972144	.	C	.	.	PASS	END=94972180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	94972181	.	T	.	.	PASS	END=94972199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:91:60
chr1	94972200	.	T	.	.	PASS	END=94972211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	94972212	.	T	.	.	PASS	END=94972243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	94972244	.	A	.	.	PASS	END=94972249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	94980651	.	T	.	.	PASS	END=94980670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	94980671	.	C	G	1156.51	PASS	DP=36;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=32.13;SB=-250.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,36:36:93.28:1190,93,0:60:93:1.000
chr1	94980672	.	A	.	.	PASS	END=94980702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	94980703	.	T	.	.	PASS	END=94980715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	94980716	.	C	.	.	PASS	END=94980785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	94980786	.	A	.	.	PASS	END=94980799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	94982557	.	T	.	.	PASS	END=94982601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	94982602	.	C	.	.	PASS	END=94982638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	94982639	.	A	.	.	PASS	END=94982705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	94982706	.	C	.	.	PASS	END=94982734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	94982735	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:64:60
chr1	94982736	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:99:60
chr1	94996014	.	C	.	.	PASS	END=94996054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	94996055	.	C	.	.	PASS	END=94996125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	94996126	.	C	.	.	PASS	END=94996148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	94996149	.	A	.	.	PASS	END=94996154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	94997875	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	94997876	.	C	.	.	PASS	END=94997898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	94997899	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:6:60
chr1	94997900	.	C	.	.	PASS	END=94997919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	94997920	.	G	.	.	PASS	END=94997932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	94997933	.	C	.	.	PASS	END=94997960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	94997961	.	C	.	.	PASS	END=94998036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	94998037	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:39:60
chr1	94998038	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:81:60
chr1	94998624	.	A	.	.	PASS	END=94998658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	94998659	.	G	.	.	PASS	END=94998723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	94998724	.	A	.	.	PASS	END=94998756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	94998757	.	T	.	.	PASS	END=94998765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	94998766	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:63:60
chr1	94998767	.	A	.	.	PASS	END=94998785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	94998786	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:54:60
chr1	94998787	.	C	.	.	PASS	END=94998815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	94998816	.	C	.	.	PASS	END=94998821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	94998822	.	T	.	.	PASS	END=94998839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	94998840	.	T	.	.	PASS	END=94998843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	95001519	.	A	.	.	PASS	END=95001539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	95001540	.	C	.	.	PASS	END=95001565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	95001566	.	C	.	.	PASS	END=95001599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	95001600	.	A	C	6282.60	PASS	BaseQRankSum=0.515;DP=205;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=16.2031;MQ=60;MQ0=0;MQRankSum=-0.076;QD=30.65;ReadPosRankSum=0.414;SB=-2819.51	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,204:205:99:6283,448,0:60:99:0.995
chr1	95001601	.	G	.	.	PASS	END=95001701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	95001702	.	C	.	.	PASS	END=95001722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	95005761	.	G	.	.	PASS	END=95005806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	95005807	.	G	.	.	PASS	END=95005815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	95005816	.	A	.	.	PASS	END=95005822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	95005823	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:40:60
chr1	95005824	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:84:60
chr1	95005825	.	G	.	.	PASS	END=95005926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	95007040	.	C	.	.	LowGQX	END=95007041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	95007042	.	T	.	.	LowGQX	END=95007047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	95007048	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr1	95007049	.	T	.	.	LowGQX	END=95007061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	95007062	.	C	.	7.21	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:0.02:60:0
chr1	95007063	.	C	.	.	LowGQX	END=95007077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	95007078	.	G	.	.	PASS	END=95007080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	95007081	.	G	.	.	LowGQX	END=95007082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:60
chr1	95007083	.	T	.	.	PASS	END=95007084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	95007085	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	95007086	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	95007087	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr1	95007088	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	95007089	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	95007090	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	95007091	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:21:60
chr1	95007092	.	C	.	.	PASS	END=95007101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	95007102	.	C	.	.	LowGQX	END=95007122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	95007123	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr1	95007124	.	G	.	.	LowGQX	END=95007127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	95007128	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr1	95007129	.	G	.	.	LowGQX	END=95007141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	95007142	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr1	95007143	.	G	.	.	LowGQX	END=95007185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:60
chr1	95007186	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr1	95007187	.	C	.	.	LowGQX	END=95007189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	95007190	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:0:60
chr1	95007191	.	A	.	.	LowGQX	END=95007194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	95285911	.	C	.	.	LowGQX	END=95286055	GT	./.
chr1	95286056	.	C	.	.	LowGQX	END=95286060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95286061	.	G	.	.	LowGQX	.	GT	./.
chr1	95286062	.	G	.	.	LowGQX	END=95286063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95286064	.	G	.	.	LowGQX	.	GT	./.
chr1	95286065	.	A	.	.	LowGQX	END=95286068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95286069	.	G	.	.	LowGQX	.	GT	./.
chr1	95286070	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95286504	.	G	.	.	LowGQX	END=95286612	GT	./.
chr1	95290048	.	G	.	.	LowGQX	END=95290193	GT	./.
chr1	95291389	.	A	.	.	LowGQX	END=95291494	GT	./.
chr1	95293061	.	A	.	.	LowGQX	END=95293201	GT	./.
chr1	95294046	.	C	.	.	LowGQX	END=95294145	GT	./.
chr1	95303265	.	A	.	.	LowGQX	END=95303429	GT	./.
chr1	95305499	.	T	.	.	LowGQX	END=95305598	GT	./.
chr1	95307554	.	A	.	.	LowGQX	END=95307565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95307566	.	T	.	.	LowGQX	.	GT	./.
chr1	95307567	.	G	.	.	LowGQX	END=95307574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95307575	.	G	.	.	LowGQX	.	GT	./.
chr1	95307576	.	T	.	.	LowGQX	END=95307597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95307598	.	A	.	.	LowGQX	.	GT	./.
chr1	95307599	.	C	.	.	LowGQX	END=95307600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95307601	.	A	.	.	LowGQX	.	GT	./.
chr1	95307602	.	C	.	.	LowGQX	END=95307605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95307606	.	A	.	.	LowGQX	.	GT	./.
chr1	95307607	.	G	.	.	LowGQX	END=95307619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95307620	.	C	.	.	LowGQX	.	GT	./.
chr1	95307621	.	A	.	.	LowGQX	END=95307651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95307652	.	G	.	.	LowGQX	.	GT	./.
chr1	95307653	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95307654	.	T	.	.	LowGQX	.	GT	./.
chr1	95307655	.	T	.	.	LowGQX	END=95307663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95307664	.	T	.	.	LowGQX	.	GT	./.
chr1	95307665	.	A	.	.	LowGQX	END=95307681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95307682	.	T	.	.	LowGQX	.	GT	./.
chr1	95310832	.	A	.	.	LowGQX	END=95310843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95310844	.	T	.	.	LowGQX	.	GT	./.
chr1	95310845	.	C	.	.	LowGQX	END=95310874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95310875	.	A	.	.	LowGQX	.	GT	./.
chr1	95310876	.	A	.	.	LowGQX	END=95310946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95310947	.	A	.	.	LowGQX	END=95311022	GT	./.
chr1	95322889	.	A	.	.	LowGQX	END=95323058	GT	./.
chr1	95330297	.	A	.	.	LowGQX	END=95330457	GT	./.
chr1	95332881	.	A	.	.	LowGQX	END=95332900	GT	./.
chr1	95332901	.	G	.	.	LowGQX	END=95332954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	95332955	.	C	.	32.74	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:2.88:60:3
chr1	95332956	.	C	.	.	LowGQX	END=95332980	GT	./.
chr1	95356684	.	A	.	.	LowGQX	END=95356825	GT	./.
chr1	95357835	.	A	.	.	LowGQX	END=95357841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95357842	.	A	.	.	LowGQX	.	GT	./.
chr1	95357843	.	G	.	.	LowGQX	END=95357858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95357859	.	T	.	.	LowGQX	.	GT	./.
chr1	95357860	.	T	.	.	LowGQX	END=95357864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95357865	.	G	.	.	LowGQX	.	GT	./.
chr1	95357866	.	A	.	.	LowGQX	END=95357874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95357875	.	G	.	.	LowGQX	END=95357894	GT	./.
chr1	95357895	.	C	.	.	LowGQX	END=95357902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95357903	.	G	.	.	LowGQX	.	GT	./.
chr1	95357904	.	T	.	.	LowGQX	END=95357938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95357939	.	G	.	.	LowGQX	.	GT	./.
chr1	95357940	.	C	.	.	LowGQX	END=95357988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95357989	.	T	.	.	LowGQX	.	GT	./.
chr1	95357990	.	G	.	.	LowGQX	END=95358034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95358035	.	T	.	.	LowGQX	.	GT	./.
chr1	95358036	.	C	.	.	LowGQX	END=95358044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95358045	.	A	.	.	LowGQX	END=95358075	GT	./.
chr1	95360367	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95360368	.	T	.	.	LowGQX	END=95360480	GT	./.
chr1	95363296	.	A	.	.	LowGQX	END=95363641	GT	./.
chr1	95364925	.	A	.	.	LowGQX	END=95365075	GT	./.
chr1	95367223	.	A	.	.	LowGQX	END=95367343	GT	./.
chr1	95367675	.	A	.	.	LowGQX	END=95367816	GT	./.
chr1	95368662	.	T	.	.	LowGQX	END=95368761	GT	./.
chr1	95368957	.	A	.	.	LowGQX	END=95369123	GT	./.
chr1	95392313	.	A	.	.	LowGQX	END=95392472	GT	./.
chr1	95426899	.	A	.	.	LowGQX	END=95426998	GT	./.
chr1	95428481	.	A	.	.	LowGQX	END=95428571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95428572	.	T	.	.	LowGQX	END=95428631	GT	./.
chr1	95428632	.	G	.	.	LowGQX	END=95428784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95448630	.	T	.	.	LowGQX	END=95448864	GT	./.
chr1	95492683	.	A	.	.	LowGQX	END=95492818	GT	./.
chr1	95530420	.	A	.	.	LowGQX	END=95530575	GT	./.
chr1	95538317	.	A	.	.	LowGQX	END=95538456	GT	./.
chr1	95609456	.	A	.	.	LowGQX	END=95609614	GT	./.
chr1	95614253	.	T	.	.	LowGQX	END=95614352	GT	./.
chr1	95615692	.	C	.	.	LowGQX	END=95615843	GT	./.
chr1	95616819	.	C	.	.	LowGQX	END=95616978	GT	./.
chr1	95639359	.	G	.	.	LowGQX	END=95639458	GT	./.
chr1	95657104	.	A	.	.	LowGQX	END=95657426	GT	./.
chr1	95696454	.	C	.	.	LowGQX	END=95696553	GT	./.
chr1	95699780	.	C	.	.	LowGQX	END=95699811	GT	./.
chr1	95699812	.	T	.	.	LowGQX	END=95699879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95705396	.	T	.	.	LowGQX	END=95705495	GT	./.
chr1	95709765	.	A	.	.	LowGQX	END=95710269	GT	./.
chr1	95712096	.	A	.	.	LowGQX	END=95712199	GT	./.
chr1	95712200	.	A	.	.	LowGQX	END=95712215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95712310	.	A	.	.	LowGQX	END=95712319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95712320	.	C	.	.	LowGQX	END=95712321	GT	./.
chr1	95712322	.	T	.	.	LowGQX	END=95712327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	95712328	.	G	.	.	LowGQX	.	GT	./.
chr1	95712329	.	T	.	.	LowGQX	END=95712428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97187375	.	G	.	.	LowGQX	END=97187474	GT	./.
chr1	97189086	.	C	.	.	LowGQX	END=97189185	GT	./.
chr1	97215157	.	A	.	.	LowGQX	END=97215256	GT	./.
chr1	97216791	.	A	.	.	LowGQX	END=97216872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97216873	.	T	.	.	LowGQX	END=97216890	GT	./.
chr1	97216969	.	T	.	.	LowGQX	END=97217068	GT	./.
chr1	97235257	.	A	.	.	LowGQX	END=97235433	GT	./.
chr1	97236242	.	A	.	.	LowGQX	END=97236443	GT	./.
chr1	97243139	.	A	.	.	LowGQX	END=97243307	GT	./.
chr1	97243390	.	A	.	.	LowGQX	END=97243504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97250603	.	T	.	.	LowGQX	END=97250803	GT	./.
chr1	97250804	.	C	.	.	LowGQX	END=97250812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97270340	.	G	.	.	LowGQX	END=97270343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97270344	.	T	.	.	LowGQX	.	GT	./.
chr1	97270345	.	T	.	.	LowGQX	END=97270349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97270350	.	T	.	.	LowGQX	.	GT	./.
chr1	97270351	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97270352	.	G	.	.	LowGQX	.	GT	./.
chr1	97270353	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97270354	.	A	.	.	LowGQX	END=97270355	GT	./.
chr1	97270356	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97270357	.	T	.	.	LowGQX	.	GT	./.
chr1	97270358	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97270359	.	T	.	.	LowGQX	.	GT	./.
chr1	97270360	.	T	.	.	LowGQX	END=97270365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97270366	.	A	.	.	LowGQX	.	GT	./.
chr1	97270367	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97270368	.	C	.	.	LowGQX	.	GT	./.
chr1	97270369	.	T	.	.	LowGQX	END=97270372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97270373	.	A	.	.	LowGQX	END=97270375	GT	./.
chr1	97270376	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97270377	.	C	.	.	LowGQX	END=97270379	GT	./.
chr1	97270380	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97270381	.	G	.	.	LowGQX	.	GT	./.
chr1	97270382	.	G	.	.	LowGQX	END=97270383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97270384	.	C	.	.	LowGQX	END=97270386	GT	./.
chr1	97270387	.	T	.	.	LowGQX	END=97270388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97270389	.	C	.	.	LowGQX	.	GT	./.
chr1	97270390	.	A	.	.	LowGQX	END=97270391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97270392	.	A	.	.	LowGQX	.	GT	./.
chr1	97270393	.	T	.	.	LowGQX	END=97270399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97270400	.	G	.	.	LowGQX	.	GT	./.
chr1	97270401	.	C	.	.	LowGQX	END=97270402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97270403	.	G	.	.	LowGQX	END=97270497	GT	./.
chr1	97271942	.	T	.	.	LowGQX	END=97272021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97272022	.	A	.	.	LowGQX	END=97272041	GT	./.
chr1	97272360	.	T	.	.	LowGQX	END=97272518	GT	./.
chr1	97278266	.	A	.	.	LowGQX	END=97278312	GT	./.
chr1	97278313	.	G	.	.	LowGQX	END=97278315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97278316	.	T	.	.	LowGQX	.	GT	./.
chr1	97278317	.	T	.	.	LowGQX	END=97278481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97278482	.	C	.	.	LowGQX	END=97278486	GT	./.
chr1	97278574	.	A	.	.	LowGQX	END=97278673	GT	./.
chr1	97278828	.	G	.	.	LowGQX	END=97278927	GT	./.
chr1	97278928	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97278929	.	C	.	.	LowGQX	.	GT	./.
chr1	97278930	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97278931	.	G	.	.	LowGQX	.	GT	./.
chr1	97278932	.	A	.	.	LowGQX	END=97278936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97278937	.	G	.	.	LowGQX	.	GT	./.
chr1	97278938	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97278939	.	C	.	.	LowGQX	END=97278940	GT	./.
chr1	97278941	.	T	.	.	LowGQX	END=97278954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97278955	.	A	.	.	LowGQX	.	GT	./.
chr1	97278956	.	A	.	.	LowGQX	END=97278958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97278959	.	T	.	.	LowGQX	END=97278960	GT	./.
chr1	97278961	.	A	.	.	LowGQX	END=97278963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	97544481	.	C	.	.	PASS	END=97544485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	97544486	.	T	.	.	PASS	END=97544516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	97544517	.	G	.	.	PASS	END=97544550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	97544551	.	G	.	.	PASS	END=97544564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	97544565	.	T	.	.	PASS	END=97544636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	97544637	.	C	.	.	PASS	END=97544658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	97544659	.	T	.	.	PASS	END=97544702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	97544703	.	C	.	.	PASS	END=97544716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	97544717	.	A	.	.	PASS	END=97544730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	97544731	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:87:60
chr1	97544732	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:51:60
chr1	97544733	.	A	.	.	PASS	END=97544738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	97544739	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:48:60
chr1	97544740	.	A	.	.	PASS	END=97544746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	97544747	.	T	.	.	PASS	END=97544753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	97547835	.	A	.	.	PASS	END=97547851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	97547852	.	T	.	.	PASS	END=97547877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	97547878	.	A	.	.	PASS	END=97547933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	97547934	.	A	.	.	PASS	END=97548002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	97548003	.	C	.	.	PASS	END=97548052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	97548053	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:51:60
chr1	97548054	.	A	.	.	PASS	END=97548071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	97548072	.	T	.	.	PASS	END=97548077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	97563994	.	T	.	.	PASS	END=97563995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:39:60
chr1	97563996	.	T	.	.	PASS	END=97564002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	97564003	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:6:60
chr1	97564004	.	C	.	.	PASS	END=97564011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	97564012	.	T	.	.	PASS	END=97564015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	97564016	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:33:60
chr1	97564017	.	A	.	.	PASS	END=97564019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	97564020	.	C	.	.	PASS	END=97564062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	97564063	.	C	.	.	PASS	END=97564166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	97564167	.	A	.	.	PASS	END=97564200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	97564201	.	C	.	.	PASS	END=97564204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	97564205	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr1	97564206	.	A	.	.	PASS	END=97564222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	97564223	.	A	.	.	PASS	END=97564239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	97658574	.	A	.	.	PASS	END=97658584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	97658585	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:24:60
chr1	97658586	.	T	.	.	PASS	END=97658610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	97658611	.	A	.	.	PASS	END=97658618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	97658619	.	A	.	.	PASS	END=97658639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	97658640	.	A	.	.	PASS	END=97658672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:96:60
chr1	97658673	.	A	.	.	PASS	END=97658692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	97658693	.	G	.	.	PASS	END=97658751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	97658752	.	G	.	.	PASS	END=97658802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	97658803	.	A	.	.	PASS	END=97658843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	97658844	.	A	.	.	PASS	END=97658855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	97700357	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:84:60
chr1	97700358	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:54:60
chr1	97700359	.	A	.	.	PASS	END=97700364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	97700365	.	G	.	.	PASS	END=97700371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:72:60
chr1	97700372	.	A	.	.	PASS	END=97700410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	97700411	.	G	.	.	PASS	END=97700426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	97700427	.	C	.	.	PASS	END=97700475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	97700476	.	C	.	.	PASS	END=97700528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	97700529	.	G	.	.	PASS	END=97700576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	97700577	.	T	.	.	PASS	END=97700585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	97700586	.	T	.	.	PASS	END=97700601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	97770764	.	T	.	.	PASS	END=97770791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:81:60
chr1	97770792	.	T	.	.	PASS	END=97770826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	97770827	.	C	.	.	PASS	END=97770922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	97770923	.	C	.	.	PASS	END=97770942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	97770943	.	G	.	.	PASS	END=97770960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr1	97770961	.	T	.	.	PASS	END=97770965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	97770966	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:63:60
chr1	97770967	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:99:60
chr1	97770968	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:57:60
chr1	97770969	.	T	.	.	PASS	END=97770975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	97770976	.	A	.	.	PASS	END=97770985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	97771682	.	T	.	.	PASS	END=97771692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	97771693	.	A	.	.	PASS	END=97771707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	97771708	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:75:60
chr1	97771709	.	A	.	.	PASS	END=97771744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:78:60
chr1	97771745	.	C	.	.	PASS	END=97771836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:97:60
chr1	97771837	.	C	.	.	PASS	END=97771852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	97771853	.	C	.	.	PASS	END=97771882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	97771883	.	C	.	.	PASS	END=97771900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	97771901	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:36:60
chr1	97771902	.	T	.	.	PASS	END=97771904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	97839066	.	G	.	.	PASS	END=97839070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	97839071	.	G	.	.	PASS	END=97839077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	97839078	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:63:60
chr1	97839079	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:93:60
chr1	97839080	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:63:60
chr1	97839081	.	A	.	.	PASS	END=97839096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	97839097	.	G	.	.	PASS	END=97839109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	97839110	.	T	.	.	PASS	END=97839132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	97839133	.	C	.	.	PASS	END=97839184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	97839185	.	C	.	.	PASS	END=97839240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	97839241	.	T	.	.	PASS	END=97839251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	97847898	.	T	.	.	PASS	END=97847915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	97847916	.	A	.	.	PASS	END=97847926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	97847927	.	T	.	.	PASS	END=97847940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	97847941	.	A	.	.	PASS	END=97848068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	97915564	.	A	.	.	PASS	END=97915574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	97915575	.	T	.	.	PASS	END=97915634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	97915635	.	T	.	.	PASS	END=97915699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	97915700	.	A	.	.	PASS	END=97915723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	97915724	.	A	.	.	PASS	END=97915736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	97915737	.	T	.	.	PASS	END=97915757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:60
chr1	97915758	.	G	.	.	PASS	END=97915780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	97915781	.	T	.	.	PASS	END=97915804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	97915805	.	T	.	.	PASS	END=97915812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	97915813	.	T	.	.	PASS	END=97915830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	97981231	.	A	.	.	PASS	END=97981241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	97981242	.	T	C	1142.77	PASS	BaseQRankSum=1.970;DP=93;Dels=0.00;FS=6.313;HRun=0;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=0.378;QD=12.29;ReadPosRankSum=1.150;SB=-158.71	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:49,42:93:99:1173,0,1562:60:99:0.462
chr1	97981243	.	G	A	1214.52	PASS	BaseQRankSum=0.978;DP=81;Dels=0.00;FS=1.704;HRun=1;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-1.383;QD=14.99;ReadPosRankSum=-0.458;SB=-136.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,42:81:99:1245,0,1202:60:99:0.525
chr1	97981244	.	A	.	.	PASS	END=97981273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	97981274	.	T	.	.	PASS	END=97981297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	97981298	.	G	.	.	PASS	END=97981318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	97981319	.	C	.	.	PASS	END=97981384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	97981385	.	A	.	.	PASS	END=97981394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr1	97981395	.	T	C	2840.19	PASS	BaseQRankSum=1.083;DP=245;Dels=0.00;FS=1.032;HRun=0;HaplotypeScore=16.1499;MQ=60;MQ0=0;MQRankSum=-2.091;QD=11.59;ReadPosRankSum=0.084;SB=-1439.74	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:128,116:245:99:2870,0,3206:60:99:0.475
chr1	97981396	.	A	.	.	PASS	END=97981451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	97981452	.	A	.	.	PASS	END=97981469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	97981470	.	T	.	.	PASS	END=97981497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	97981498	.	C	.	.	PASS	END=97981520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	97981521	.	G	.	.	PASS	END=97981541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	97981542	.	T	.	.	PASS	END=97981548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	98015065	.	A	.	.	PASS	END=98015119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	98015120	.	A	.	.	PASS	END=98015187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	98015188	.	A	.	.	PASS	END=98015266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	98015267	.	C	.	.	PASS	END=98015308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	98015309	.	A	.	.	PASS	END=98015346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	98015347	.	A	.	.	PASS	END=98015351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	98039265	.	C	.	.	PASS	END=98039267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	98039268	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	98039269	.	A	.	.	PASS	END=98039279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	98039280	.	C	.	.	PASS	END=98039293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	98039294	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:60
chr1	98039295	.	T	.	.	PASS	END=98039301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	98039302	.	T	.	.	PASS	END=98039314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	98039315	.	C	.	.	PASS	END=98039325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	98039326	.	A	.	.	PASS	END=98039367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	98039368	.	C	.	.	PASS	END=98039412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	98039413	.	A	.	.	PASS	END=98039481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	98039482	.	C	.	.	PASS	END=98039563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	98039564	.	T	.	.	PASS	END=98039577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	98058723	.	C	.	.	PASS	END=98058729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	98058730	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:61:60
chr1	98058731	.	C	.	.	PASS	END=98058747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	98058748	.	C	.	.	PASS	END=98058775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	98058776	.	C	.	.	PASS	END=98058808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	98058809	.	T	.	.	PASS	END=98058848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	98058849	.	A	.	.	PASS	END=98058877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	98058878	.	C	.	.	PASS	END=98058936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	98058937	.	C	.	.	PASS	END=98058974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	98058975	.	G	.	.	PASS	END=98058994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	98060564	.	A	.	.	PASS	END=98060571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:60
chr1	98060572	.	A	.	.	PASS	END=98060579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:66:60
chr1	98060580	.	A	.	.	PASS	END=98060606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	98060607	.	T	.	.	PASS	END=98060681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr1	98060682	.	C	.	.	PASS	END=98060730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	98060731	.	T	.	.	PASS	END=98060756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	98060757	.	G	.	.	PASS	END=98060770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	98060771	.	C	.	.	PASS	END=98060773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	98144600	.	G	.	.	PASS	END=98144692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	98144693	.	T	.	.	PASS	END=98144722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	98144723	.	T	.	.	PASS	END=98144785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	98144786	.	T	.	.	PASS	END=98144789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	98157222	.	C	.	.	PASS	END=98157225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	98157226	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:33:60
chr1	98157227	.	T	.	.	PASS	END=98157230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	98157231	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:41:60
chr1	98157232	.	T	.	.	PASS	END=98157241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	98157242	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:50:60
chr1	98157243	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:81:60
chr1	98157244	.	G	.	.	PASS	END=98157285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	98157286	.	T	.	.	PASS	END=98157322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	98157323	.	A	.	.	PASS	END=98157366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	98157367	.	G	.	.	PASS	END=98157405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	98164856	.	T	.	.	PASS	END=98164921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	98164922	.	T	.	.	PASS	END=98165044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	98165045	.	T	.	.	PASS	END=98165154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	98165759	.	G	.	.	LowGQX	END=98165770	GT	./.
chr1	98165771	.	G	.	.	LowGQX	END=98165790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	98165791	.	A	.	.	LowGQX	.	GT	./.
chr1	98165792	.	A	.	.	LowGQX	END=98165820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	98165821	.	A	T	14.89	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.45;SB=-25.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	98165822	.	G	.	.	LowGQX	END=98165832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	98165833	.	T	.	.	LowGQX	.	GT	./.
chr1	98165834	.	T	.	.	LowGQX	END=98165858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	98186393	.	T	.	.	PASS	END=98186401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	98186402	.	G	.	.	PASS	END=98186404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	98186405	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:57:60
chr1	98186406	.	C	.	.	PASS	END=98186414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	98186415	.	G	.	.	PASS	END=98186486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	98186487	.	G	.	.	PASS	END=98186505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	98186506	.	G	.	.	PASS	END=98186522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	98186523	.	C	.	.	PASS	END=98186532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:57:60
chr1	98186533	.	T	.	.	PASS	END=98186550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr1	98186551	.	A	.	.	PASS	END=98186552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	98187015	.	T	.	.	PASS	END=98187024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	98187025	.	G	.	.	PASS	END=98187047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	98187048	.	C	.	.	PASS	END=98187067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	98187068	.	C	.	.	PASS	END=98187175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	98187176	.	T	.	.	PASS	END=98187225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	98187226	.	T	.	.	PASS	END=98187259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	98187260	.	C	.	.	PASS	END=98187278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	98205897	.	A	.	.	PASS	END=98205903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	98205904	.	T	.	.	PASS	END=98205929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	98205930	.	A	.	.	PASS	END=98205958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	98205959	.	T	.	.	PASS	END=98206032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr1	98206033	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:75:60
chr1	98206034	.	A	.	.	PASS	END=98206063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	98206064	.	A	.	.	PASS	END=98206082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	98206083	.	A	.	.	PASS	END=98206086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	98293619	.	G	.	.	PASS	END=98293646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	98293647	.	T	.	.	PASS	END=98293786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	98293787	.	A	.	.	PASS	END=98293797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	98293798	.	A	.	.	PASS	END=98293803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	98348769	.	G	.	.	PASS	END=98348791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	98348792	.	C	.	.	PASS	END=98348802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	98348803	.	G	.	.	PASS	END=98348826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	98348827	.	T	.	.	PASS	END=98348884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	98348885	.	G	A	2435.12	PASS	DP=88;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;QD=27.67;SB=-1549.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,88:88:99:2468,184,0:60:99:1.000
chr1	98348886	.	C	.	.	PASS	END=98348919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	98348920	.	G	.	.	PASS	END=98348938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	98348939	.	A	.	.	PASS	END=98348951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:80:60
chr1	98348952	.	T	.	.	PASS	END=98348971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	98348972	.	T	.	.	PASS	END=98348981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	98349365	.	G	.	.	LowGQX	END=98349464	GT	./.
chr1	98386389	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:41:60
chr1	98386390	.	G	.	.	PASS	END=98386398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	98386399	.	A	.	92.68	PASS	DP=43;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:33:43:62.69:60:63
chr1	98386400	.	C	.	.	PASS	END=98386401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	98386402	.	A	.	.	PASS	END=98386403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:68:60
chr1	98386404	.	C	.	.	PASS	END=98386409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	98386410	.	A	.	73.52	PASS	DP=45;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:36:45:43.53:60:44
chr1	98386411	.	C	.	.	PASS	END=98386421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:75:60
chr1	98386422	.	C	.	.	PASS	END=98386443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	98386444	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:48:60
chr1	98386445	.	T	.	.	PASS	END=98386492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:80:60
chr1	98386493	.	T	.	.	PASS	END=98386503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	98386504	.	C	.	.	PASS	END=98386513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:60:60
chr1	98386514	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:60
chr1	98386515	.	C	.	.	PASS	END=98386525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:63:60
chr1	98386526	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:51:60
chr1	98386527	.	C	.	.	PASS	END=98386529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	98511626	.	T	.	.	LowGQX	END=98511727	GT	./.
chr1	99127276	.	C	.	.	LowGQX	END=99127467	GT	./.
chr1	99128262	.	A	.	.	LowGQX	END=99128369	GT	./.
chr1	99150440	.	G	.	.	LowGQX	END=99150625	GT	./.
chr1	99156629	.	A	.	.	LowGQX	END=99156642	GT	./.
chr1	99156643	.	G	.	.	LowGQX	END=99156743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99157089	.	A	.	.	LowGQX	END=99157257	GT	./.
chr1	99161072	.	A	.	.	LowGQX	END=99161274	GT	./.
chr1	99164260	.	A	.	.	LowGQX	END=99164463	GT	./.
chr1	99167367	.	G	.	.	LowGQX	END=99167466	GT	./.
chr1	99203791	.	A	.	.	LowGQX	END=99203947	GT	./.
chr1	99225599	.	C	.	.	LowGQX	END=99225698	GT	./.
chr1	99358536	.	A	.	.	LowGQX	END=99358694	GT	./.
chr1	99380340	.	A	.	.	LowGQX	END=99380406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99380407	.	C	.	.	LowGQX	END=99380456	GT	./.
chr1	99380457	.	T	.	.	LowGQX	END=99380460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99380461	.	T	.	.	LowGQX	END=99380462	GT	./.
chr1	99380463	.	A	.	.	LowGQX	END=99380478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387436	.	A	.	.	LowGQX	END=99387439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387440	.	G	.	.	LowGQX	.	GT	./.
chr1	99387441	.	A	.	.	LowGQX	END=99387448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387449	.	C	.	.	LowGQX	.	GT	./.
chr1	99387450	.	T	.	.	LowGQX	END=99387454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387455	.	A	.	.	LowGQX	.	GT	./.
chr1	99387456	.	T	.	.	LowGQX	END=99387462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387463	.	A	.	.	LowGQX	.	GT	./.
chr1	99387464	.	C	.	.	LowGQX	END=99387485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387486	.	T	.	.	LowGQX	.	GT	./.
chr1	99387487	.	G	.	.	LowGQX	END=99387514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387515	.	T	.	.	LowGQX	.	GT	./.
chr1	99387516	.	G	.	.	LowGQX	END=99387521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387522	.	T	.	.	LowGQX	.	GT	./.
chr1	99387523	.	C	.	.	LowGQX	END=99387554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387555	.	G	.	.	LowGQX	.	GT	./.
chr1	99387556	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387557	.	A	.	.	LowGQX	.	GT	./.
chr1	99387558	.	T	.	.	LowGQX	END=99387561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387562	.	A	.	.	LowGQX	END=99387570	GT	./.
chr1	99387571	.	G	.	.	LowGQX	END=99387573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387574	.	A	.	.	LowGQX	.	GT	./.
chr1	99387575	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387576	.	T	.	.	LowGQX	.	GT	./.
chr1	99387577	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387578	.	T	.	.	LowGQX	END=99387579	GT	./.
chr1	99387580	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387581	.	T	.	.	LowGQX	.	GT	./.
chr1	99387582	.	T	.	.	LowGQX	END=99387588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387589	.	G	.	.	LowGQX	END=99387591	GT	./.
chr1	99387592	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387593	.	T	.	.	LowGQX	END=99387594	GT	./.
chr1	99387595	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387596	.	T	.	.	LowGQX	END=99387598	GT	./.
chr1	99387599	.	T	.	.	LowGQX	END=99387602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387603	.	G	.	.	LowGQX	.	GT	./.
chr1	99387604	.	G	.	.	LowGQX	END=99387610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387611	.	A	.	.	LowGQX	.	GT	./.
chr1	99387612	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387613	.	A	.	.	LowGQX	.	GT	./.
chr1	99387614	.	T	.	.	LowGQX	END=99387619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387620	.	A	.	.	LowGQX	.	GT	./.
chr1	99387621	.	C	.	.	LowGQX	END=99387622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387623	.	T	.	.	LowGQX	.	GT	./.
chr1	99387624	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99387625	.	C	.	.	LowGQX	.	GT	./.
chr1	99387626	.	A	.	.	LowGQX	END=99387635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99418624	.	A	.	.	LowGQX	END=99418878	GT	./.
chr1	99422123	.	C	.	.	LowGQX	END=99422299	GT	./.
chr1	99469989	.	A	.	.	LowGQX	END=99470229	GT	./.
chr1	99729973	.	C	.	.	LowGQX	END=99730293	GT	./.
chr1	99753519	.	A	.	.	LowGQX	END=99753523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99753524	.	C	.	.	LowGQX	.	GT	./.
chr1	99753525	.	C	.	.	LowGQX	END=99753564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99753565	.	A	.	.	LowGQX	.	GT	./.
chr1	99753566	.	C	.	.	LowGQX	END=99753582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99753583	.	A	.	.	LowGQX	.	GT	./.
chr1	99753584	.	C	.	.	LowGQX	END=99753708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99762292	.	A	.	.	LowGQX	END=99762425	GT	./.
chr1	99764456	.	A	.	.	LowGQX	END=99764795	GT	./.
chr1	99766444	.	T	.	.	LowGQX	END=99766543	GT	./.
chr1	99767278	.	A	.	.	LowGQX	END=99767455	GT	./.
chr1	99771239	.	A	.	.	LowGQX	END=99772159	GT	./.
chr1	99772160	.	A	.	.	LowGQX	END=99772235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	99772236	.	G	.	.	LowGQX	END=99772370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	99772371	.	A	.	.	LowGQX	END=99772379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	99772380	.	C	.	.	LowGQX	END=99772568	GT	./.
chr1	100111847	.	C	.	.	LowGQX	END=100111884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100111885	.	T	.	.	LowGQX	END=100111946	GT	./.
chr1	100127806	.	C	.	.	LowGQX	END=100128022	GT	./.
chr1	100133196	.	A	.	.	LowGQX	END=100133324	GT	./.
chr1	100152230	.	A	.	.	LowGQX	END=100152348	GT	./.
chr1	100152453	.	G	.	.	LowGQX	END=100152552	GT	./.
chr1	100152630	.	A	.	.	LowGQX	END=100152747	GT	./.
chr1	100154329	.	A	.	.	LowGQX	END=100154591	GT	./.
chr1	100154592	.	A	.	.	LowGQX	END=100154647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100154648	.	A	.	.	LowGQX	.	GT	./.
chr1	100154649	.	C	.	.	LowGQX	END=100154803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100154804	.	C	.	.	LowGQX	END=100155430	GT	./.
chr1	100159493	.	T	.	.	LowGQX	END=100159523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100159524	.	A	.	.	LowGQX	.	GT	./.
chr1	100159525	.	A	.	.	LowGQX	END=100159545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100159546	.	A	.	.	LowGQX	.	GT	./.
chr1	100159547	.	A	.	.	LowGQX	END=100159554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100159555	.	T	.	.	LowGQX	END=100159585	GT	./.
chr1	100159586	.	A	.	.	LowGQX	END=100159600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100159601	.	G	.	.	LowGQX	.	GT	./.
chr1	100159602	.	G	.	.	LowGQX	END=100159646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100174452	.	C	.	.	LowGQX	END=100174678	GT	./.
chr1	100174735	.	G	.	.	LowGQX	END=100174834	GT	./.
chr1	100176361	.	C	.	.	LowGQX	END=100176507	GT	./.
chr1	100177641	.	G	.	.	LowGQX	END=100177740	GT	./.
chr1	100177972	.	A	.	.	LowGQX	END=100178037	GT	./.
chr1	100178038	.	C	.	.	LowGQX	END=100178073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	100181136	.	A	.	.	LowGQX	END=100181192	GT	./.
chr1	100181193	.	G	.	.	LowGQX	END=100181235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100182964	.	A	.	.	LowGQX	END=100183033	GT	./.
chr1	100183034	.	G	.	.	LowGQX	END=100183083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100185038	.	A	.	.	LowGQX	END=100185205	GT	./.
chr1	100194047	.	A	.	.	LowGQX	END=100194198	GT	./.
chr1	100195204	.	A	.	.	LowGQX	END=100195262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100195263	.	A	.	.	LowGQX	END=100195306	GT	./.
chr1	100203640	.	A	.	.	LowGQX	END=100203826	GT	./.
chr1	100206347	.	A	.	.	LowGQX	END=100206498	GT	./.
chr1	100207733	.	A	.	.	LowGQX	END=100207832	GT	./.
chr1	100212848	.	A	.	.	LowGQX	END=100212971	GT	./.
chr1	100212972	.	G	.	.	LowGQX	END=100212975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100212976	.	T	.	.	LowGQX	.	GT	./.
chr1	100212977	.	G	.	.	LowGQX	END=100212988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100214117	.	C	.	.	LowGQX	END=100214326	GT	./.
chr1	100316540	.	A	.	.	PASS	END=100316554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	100316555	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:71:60
chr1	100316556	.	C	.	.	PASS	END=100316588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	100316589	.	A	G	468.40	PASS	BaseQRankSum=-1.968;DP=44;Dels=0.00;FS=4.566;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-1.355;QD=10.65;ReadPosRankSum=-0.153;SB=-238.93	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:24,20:44:99:498,0,638:60:99:0.455
chr1	100316590	.	G	.	.	PASS	END=100316605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	100316606	.	A	.	.	PASS	END=100316653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	100316654	.	A	.	.	PASS	END=100316695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	100316696	.	T	.	.	PASS	END=100316713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:81:60
chr1	100316714	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:76:60
chr1	100316715	.	G	.	.	PASS	END=100316731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	100318175	.	T	.	.	PASS	END=100318178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	100318179	.	T	.	.	PASS	END=100318190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	100318191	.	G	.	.	PASS	END=100318209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	100318210	.	G	.	.	PASS	END=100318226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr1	100318227	.	T	.	.	PASS	END=100318242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	100318243	.	C	.	.	PASS	END=100318244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	100318245	.	T	G	1174.91	PASS	BaseQRankSum=0.916;DP=88;Dels=0.00;FS=8.539;HRun=0;HaplotypeScore=7.6178;MQ=60;MQ0=0;MQRankSum=-2.108;QD=13.35;ReadPosRankSum=0.403;SB=-580.48	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:39,49:88:99:1205,0,921:60:99:0.557
chr1	100318246	.	T	.	.	PASS	END=100318310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	100326977	.	A	.	.	PASS	END=100327005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	100327006	.	A	.	.	PASS	END=100327031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	100327032	.	G	.	.	PASS	END=100327063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	100327064	.	G	.	.	PASS	END=100327073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	100327074	.	T	.	.	PASS	END=100327103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	100327104	.	C	.	.	PASS	END=100327182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	100327183	.	T	C	1636.63	PASS	BaseQRankSum=-1.648;DP=145;Dels=0.00;FS=6.410;HRun=2;HaplotypeScore=9.5219;MQ=60;MQ0=0;MQRankSum=0.620;QD=11.29;ReadPosRankSum=-1.736;SB=-731.36	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:85,60:145:99:1667,0,2446:60:99:0.414
chr1	100327184	.	C	.	.	PASS	END=100327224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	100327225	.	T	.	.	PASS	END=100327257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	100327258	.	T	.	.	PASS	END=100327266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	100327267	.	A	.	.	PASS	END=100327320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	100327762	.	A	.	.	PASS	END=100327813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	100327814	.	A	.	.	PASS	END=100327831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	100327832	.	G	.	.	PASS	END=100327840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	100327841	.	G	.	.	PASS	END=100327879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	100327880	.	G	.	.	PASS	END=100327892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	100327893	.	A	.	.	PASS	END=100327989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	100327990	.	C	.	.	PASS	END=100328020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	100329891	.	T	.	.	PASS	END=100329905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	100329906	.	G	.	.	PASS	END=100329921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	100329922	.	T	.	.	PASS	END=100329933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	100329934	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:15:60
chr1	100329935	.	T	.	.	PASS	END=100329974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	100329975	.	C	.	.	PASS	END=100329984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	100329985	.	A	.	.	PASS	END=100329994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	100329995	.	T	.	.	PASS	END=100330058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	100330059	.	C	.	.	PASS	END=100330125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	100330126	.	T	.	.	PASS	END=100330142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	100330143	.	C	.	.	PASS	END=100330158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	100330159	.	T	.	.	PASS	END=100330192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr1	100330193	.	C	.	.	PASS	END=100330196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:84:60
chr1	100335905	.	C	.	.	PASS	END=100335916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	100335917	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	100335918	.	A	.	.	PASS	END=100335919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	100335920	.	T	.	.	LowGQX	END=100335921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	100335922	.	T	.	.	PASS	END=100335930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	100335931	.	C	.	.	PASS	END=100335944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	100335945	.	T	.	.	PASS	END=100335975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	100335976	.	C	.	.	PASS	END=100335981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	100335982	.	C	.	.	PASS	END=100335992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	100335993	.	T	.	.	PASS	END=100335994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	100335995	.	C	.	.	PASS	END=100335996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:39:60
chr1	100335997	.	T	.	.	PASS	END=100336002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	100336003	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:45:60
chr1	100336004	.	T	.	.	PASS	END=100336035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr1	100336036	.	G	.	.	PASS	END=100336154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	100336155	.	A	.	.	PASS	END=100336186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	100336187	.	G	.	.	PASS	END=100336188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	100336263	.	T	.	.	PASS	END=100336272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	100336273	.	T	.	.	PASS	END=100336295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	100336296	.	A	.	.	PASS	END=100336360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	100336361	.	C	T	2936.73	PASS	DP=92;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=8.5223;MQ=60;MQ0=0;QD=31.92;SB=-1294.21	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,92:92:99:2970,223,0:60:99:1.000
chr1	100336362	.	T	.	.	PASS	END=100336422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	100336423	.	A	.	.	PASS	END=100336434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	100336435	.	A	.	.	PASS	END=100336445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	100336446	.	T	.	.	PASS	END=100336458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	100336459	.	T	.	.	PASS	END=100336476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	100340192	.	A	.	.	PASS	END=100340224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	100340225	.	G	A	1773.10	PASS	DP=61;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;QD=29.07;SB=-863.24	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,61:61:99:1806,132,0:60:99:1.000
chr1	100340226	.	T	.	.	PASS	END=100340263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	100340264	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:57:60
chr1	100340265	.	T	.	.	PASS	END=100340314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	100340315	.	T	.	.	PASS	END=100340337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	100340338	.	A	.	.	PASS	END=100340374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:89:60
chr1	100340375	.	T	.	.	PASS	END=100340410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	100340411	.	A	.	.	PASS	END=100340412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:62:60
chr1	100340413	.	C	.	.	PASS	END=100340417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	100340659	.	G	.	.	PASS	END=100340706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	100340707	.	T	.	.	PASS	END=100340733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	100340734	.	A	.	.	PASS	END=100340826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	100340827	.	T	C	1064.66	PASS	BaseQRankSum=-1.047;DP=76;Dels=0.00;FS=10.680;HRun=0;HaplotypeScore=7.7228;MQ=60;MQ0=0;MQRankSum=1.710;QD=14.01;ReadPosRankSum=-0.110;SB=-650.48	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:32,44:76:99:1095,0,852:60:99:0.579
chr1	100340828	.	G	.	.	PASS	END=100340890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	100340891	.	T	.	.	PASS	END=100340974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	100340975	.	T	.	.	PASS	END=100340995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	100340996	.	A	.	.	PASS	END=100341009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	100341010	.	A	.	.	PASS	END=100341038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	100341039	.	T	.	.	PASS	END=100341062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	100341963	.	T	.	.	PASS	END=100341986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	100341987	.	A	.	.	PASS	END=100342046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	100342047	.	C	.	.	PASS	END=100342121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	100342122	.	A	.	.	PASS	END=100342188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	100342189	.	G	.	.	PASS	END=100342202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	100342203	.	A	.	.	PASS	END=100342204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	100343146	.	T	.	.	PASS	END=100343196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	100343197	.	G	.	.	PASS	END=100343260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	100343261	.	G	.	.	PASS	END=100343411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	100343412	.	A	.	.	PASS	END=100343435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	100345428	.	T	.	.	PASS	END=100345439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	100345440	.	T	.	.	PASS	END=100345464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	100345465	.	T	.	.	PASS	END=100345467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	100345468	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:36:60
chr1	100345469	.	C	.	.	PASS	END=100345480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	100345481	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:73:60
chr1	100345482	.	A	.	.	PASS	END=100345531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	100345532	.	A	.	.	PASS	END=100345591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	100345592	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:66:60
chr1	100345593	.	T	.	.	PASS	END=100345601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	100345602	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:58:60
chr1	100345603	.	G	.	.	PASS	END=100345633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	100345634	.	A	.	.	PASS	END=100345637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	100345638	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:48:60
chr1	100345639	.	A	.	.	PASS	END=100345653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	100346137	.	T	.	.	PASS	END=100346158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:60
chr1	100346159	.	T	.	.	PASS	END=100346166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	100346167	.	A	.	.	PASS	END=100346173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	100346174	.	G	.	.	PASS	END=100346178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	100346179	.	G	.	.	PASS	END=100346188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	100346189	.	G	.	.	PASS	END=100346198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	100346199	.	G	.	.	PASS	END=100346208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	100346209	.	G	.	.	PASS	END=100346264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	100346265	.	G	.	.	PASS	END=100346299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	100346300	.	T	.	.	PASS	END=100346339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	100346340	.	T	.	.	PASS	END=100346358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	100346359	.	C	.	.	PASS	END=100346402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	100346581	.	C	.	.	PASS	END=100346619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	100346620	.	G	.	.	PASS	END=100346630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	100346631	.	G	.	.	PASS	END=100346662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	100346663	.	C	.	.	PASS	END=100346699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	100346700	.	T	.	.	PASS	END=100346740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	100346741	.	T	C	1870.04	PASS	BaseQRankSum=-1.016;DP=139;Dels=0.00;FS=0.694;HRun=0;HaplotypeScore=7.6281;MQ=60;MQ0=0;MQRankSum=-0.382;QD=13.45;ReadPosRankSum=-0.477;SB=-704.57	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:64,73:139:99:1900,0,1691:60:99:0.533
chr1	100346742	.	A	.	.	PASS	END=100346784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	100346797	.	A	.	.	PASS	END=100346866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	100346867	.	A	.	.	PASS	END=100347021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	100347022	.	T	.	.	PASS	END=100347103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	100347104	.	T	.	.	PASS	END=100347162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	100347163	.	T	.	.	PASS	END=100347213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	100347214	.	T	.	.	PASS	END=100347251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	100347252	.	T	.	.	PASS	END=100347287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	100347288	.	T	.	.	PASS	END=100347298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	100349625	.	T	.	.	PASS	END=100349657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	100349658	.	G	.	.	PASS	END=100349692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	100349693	.	G	.	.	PASS	END=100349710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	100349711	.	A	.	.	PASS	END=100349929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	100349930	.	T	.	.	PASS	END=100349967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	100349968	.	A	.	.	PASS	END=100350058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	100350074	.	T	.	.	PASS	END=100350224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	100350225	.	A	.	.	PASS	END=100350274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	100350275	.	T	.	.	PASS	END=100350292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	100350293	.	C	.	.	PASS	END=100350310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	100353483	.	G	.	.	PASS	END=100353501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:85:60
chr1	100353502	.	A	.	.	PASS	END=100353608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	100353609	.	T	.	.	PASS	END=100353648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	100353649	.	T	.	.	PASS	END=100353674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	100353675	.	G	A	575.92	PASS	BaseQRankSum=1.165;DP=48;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-0.526;QD=12.00;ReadPosRankSum=-1.165;SB=-155.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:24,24:48:99:606,0,561:60:99:0.500
chr1	100353676	.	G	.	.	PASS	END=100353710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	100353711	.	T	.	.	PASS	END=100353715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	100356725	.	A	.	.	PASS	END=100356751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	100356752	.	C	.	.	PASS	END=100356877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	100356878	.	A	.	.	PASS	END=100356910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	100356911	.	A	.	.	PASS	END=100356931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	100356932	.	C	.	.	PASS	END=100356963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	100357111	.	A	.	.	PASS	END=100357120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	100357121	.	T	.	.	PASS	END=100357140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	100357141	.	T	A	1243.24	PASS	BaseQRankSum=0.907;DP=84;Dels=0.00;FS=0.906;HRun=0;HaplotypeScore=9.5117;MQ=60;MQ0=0;MQRankSum=0.695;QD=14.80;ReadPosRankSum=0.741;SB=-698.38	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:32,52:84:99:1273,0,675:60:99:0.619
chr1	100357142	.	C	.	.	PASS	END=100357202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	100357203	.	G	.	.	PASS	END=100357239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	100357240	.	A	.	.	PASS	END=100357264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	100357265	.	T	.	.	PASS	END=100357274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	100357275	.	A	.	.	PASS	END=100357346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	100357937	.	T	.	.	LowGQX	END=100357942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	100357943	.	A	.	.	LowGQX	END=100357954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:57
chr1	100357955	.	T	.	.	PASS	END=100357967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:58
chr1	100357968	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:58
chr1	100357969	.	T	.	.	PASS	END=100357979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:58
chr1	100357980	.	T	.	.	PASS	END=100357991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:59
chr1	100357992	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:51:59
chr1	100357993	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:31:59
chr1	100357994	.	T	.	.	PASS	END=100358007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:59
chr1	100358008	.	C	.	.	PASS	END=100358028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:59
chr1	100358029	.	T	.	.	PASS	END=100358036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:59
chr1	100358037	.	G	.	.	PASS	END=100358088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	100358089	.	C	.	.	PASS	END=100358174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	100358175	.	T	.	.	PASS	END=100358199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:95:60
chr1	100358200	.	G	A	611.87	PASS	BaseQRankSum=1.930;DP=56;Dels=0.00;FS=2.340;HRun=1;HaplotypeScore=3.8302;MQ=60;MQ0=0;MQRankSum=0.969;QD=10.93;ReadPosRankSum=-0.480;SB=-314.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:29,26:56:99:642,0,690:60:99:0.473
chr1	100358201	.	A	.	.	PASS	END=100358214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	100361791	.	T	.	.	PASS	END=100361811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	100361812	.	C	.	.	PASS	END=100361912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	100361913	.	C	.	.	PASS	END=100361932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	100361933	.	T	.	.	PASS	END=100361940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	100361941	.	C	.	.	PASS	END=100361961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	100361962	.	G	.	.	PASS	END=100361965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	100361966	.	T	.	.	PASS	END=100361976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	100361977	.	T	.	.	PASS	END=100361995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	100366141	.	A	.	.	PASS	END=100366145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	100366146	.	T	.	.	PASS	END=100366156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	100366157	.	T	.	.	PASS	END=100366171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	100366172	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:96:60
chr1	100366173	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:60:60
chr1	100366174	.	T	.	.	PASS	END=100366216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	100366217	.	A	.	.	PASS	END=100366235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	100366236	.	T	.	.	PASS	END=100366320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	100366321	.	C	.	.	PASS	END=100366359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr1	100366360	.	C	.	.	PASS	END=100366379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	100366380	.	C	.	.	PASS	END=100366386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	100366387	.	T	.	.	PASS	END=100366405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	100366406	.	G	.	.	PASS	END=100366412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	100366413	.	C	.	78.12	PASS	DP=23;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:18:23:48.13:60:48
chr1	100366414	.	A	.	.	PASS	END=100366416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	100366417	.	G	.	.	PASS	END=100366419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	100366420	.	A	.	.	PASS	END=100366421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	100366422	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:57:60
chr1	100366423	.	G	.	.	PASS	END=100366424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr1	100366425	.	T	.	.	PASS	END=100366429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	100366430	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:30:61
chr1	100366431	.	T	.	.	PASS	END=100366432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	100366433	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:24:60
chr1	100366434	.	A	.	.	PASS	END=100366437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	100366438	.	G	T	21.32	LowGQX;LowQD;SB	BaseQRankSum=0.091;DP=19;Dels=0.05;FS=25.185;HRun=7;HaplotypeScore=10.5701;MQ=61;MQ0=0;MQRankSum=1.268;QD=1.12;ReadPosRankSum=0.634;SB=-2.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:11,7:18:51.28:51,0,145:61:21:0.389
chr1	100366439	.	T	.	.	PASS	END=100366444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:61
chr1	100366445	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:42:61
chr1	100366446	.	G	T	22.38	LowGQX;LowQD;SB	BaseQRankSum=0.053;DP=17;Dels=0.00;FS=7.782;HRun=15;HaplotypeScore=9.6232;MQ=61;MQ0=0;MQRankSum=-0.158;QD=1.32;ReadPosRankSum=0.685;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:12,5:17:52.35:52,0,155:61:22:0.294
chr1	100366447	.	T	.	.	PASS	END=100366453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:61
chr1	100366454	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:61
chr1	100366455	.	T	.	.	PASS	END=100366458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:61
chr1	100368188	.	T	.	.	PASS	END=100368272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	100368273	.	T	.	.	PASS	END=100368301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	100368302	.	C	.	.	PASS	END=100368361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	100368362	.	T	.	.	PASS	END=100368375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	100368376	.	C	.	.	PASS	END=100368390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	100368391	.	G	.	.	PASS	END=100368393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:60
chr1	100368394	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:18:60
chr1	100368395	.	A	.	.	PASS	END=100368401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	100376217	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:96:60
chr1	100376218	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:66:60
chr1	100376219	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:99:60
chr1	100376220	.	A	.	.	PASS	END=100376261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	100376262	.	T	.	.	PASS	END=100376285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	100376286	.	G	.	.	PASS	END=100376370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	100376371	.	A	.	.	PASS	END=100376395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	100376396	.	A	.	.	PASS	END=100376424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	100376425	.	T	.	.	PASS	END=100376437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	100376438	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:32:60
chr1	100376439	.	C	.	.	PASS	END=100376441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr1	100376442	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:36:60
chr1	100376443	.	T	.	.	PASS	END=100376454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	100377910	.	G	.	.	PASS	END=100377974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	100377975	.	T	.	.	PASS	END=100378004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	100378005	.	T	.	.	PASS	END=100378084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	100378085	.	A	.	.	PASS	END=100378121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	100378122	.	A	.	.	PASS	END=100378124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	100379032	.	T	.	.	PASS	END=100379037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	100379038	.	T	.	.	PASS	END=100379058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	100379059	.	A	.	.	PASS	END=100379064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	100379065	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:96:60
chr1	100379066	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:51:60
chr1	100379067	.	T	.	.	PASS	END=100379086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	100379087	.	G	.	.	PASS	END=100379100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	100379101	.	C	.	.	PASS	END=100379198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	100379199	.	G	.	.	PASS	END=100379235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	100379236	.	C	.	.	PASS	END=100379264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	100379265	.	A	.	.	PASS	END=100379268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	100379269	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:73:60
chr1	100379270	.	T	.	.	PASS	END=100379300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	100379301	.	G	.	.	PASS	END=100379341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	100379342	.	T	.	.	PASS	END=100379345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	100380894	.	A	.	.	PASS	END=100380956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	100380957	.	T	.	.	PASS	END=100381038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	100381039	.	C	.	.	PASS	END=100381093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	100381915	.	A	.	.	PASS	END=100381996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	100381997	.	G	.	.	PASS	END=100382084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	100382085	.	T	.	.	PASS	END=100382147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	100382148	.	T	.	.	PASS	END=100382224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	100382225	.	T	.	.	PASS	END=100382285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	100382286	.	A	.	.	PASS	END=100382302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr1	100382303	.	C	.	.	PASS	END=100382311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	100382312	.	T	.	.	PASS	END=100382338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	100387039	.	G	.	.	PASS	END=100387138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	100387139	.	T	.	.	PASS	END=100387184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	100387185	.	T	.	.	PASS	END=100387225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	100387226	.	T	.	.	PASS	END=100387243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	100387244	.	A	.	.	PASS	END=100387247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	100387248	.	G	.	.	PASS	END=100387256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	100387257	.	T	.	.	PASS	END=100387258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	100436092	.	C	.	.	LowGQX	END=100436200	GT	./.
chr1	100459092	.	G	.	.	LowGQX	END=100459299	GT	./.
chr1	100464815	.	A	.	.	LowGQX	END=100465004	GT	./.
chr1	100472588	.	A	.	.	LowGQX	END=100472757	GT	./.
chr1	100476919	.	A	.	.	LowGQX	END=100477091	GT	./.
chr1	100480856	.	A	.	.	LowGQX	END=100480978	GT	./.
chr1	100483196	.	T	.	.	LowGQX	END=100483415	GT	./.
chr1	100487938	.	T	.	.	LowGQX	END=100488037	GT	./.
chr1	100503781	.	A	.	.	LowGQX	END=100503880	GT	./.
chr1	100515463	.	A	.	.	LowGQX	END=100515562	GT	./.
chr1	100524204	.	T	.	.	LowGQX	END=100524303	GT	./.
chr1	100525432	.	A	.	.	LowGQX	END=100525459	GT	./.
chr1	100525460	.	G	.	.	LowGQX	END=100525563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100527369	.	T	.	.	LowGQX	END=100527562	GT	./.
chr1	100533531	.	A	.	.	LowGQX	END=100533753	GT	./.
chr1	100534027	.	A	.	.	LowGQX	END=100534144	GT	./.
chr1	100535156	.	G	.	.	LowGQX	END=100535255	GT	./.
chr1	100542719	.	A	.	.	LowGQX	END=100542888	GT	./.
chr1	100544005	.	A	.	.	LowGQX	END=100544106	GT	./.
chr1	100546050	.	A	.	.	LowGQX	END=100546217	GT	./.
chr1	100547557	.	A	.	.	LowGQX	END=100547767	GT	./.
chr1	100550882	.	A	.	.	LowGQX	END=100550921	GT	./.
chr1	100550922	.	A	.	.	LowGQX	END=100550926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	100550927	.	G	.	.	LowGQX	.	GT	./.
chr1	100550928	.	A	.	.	LowGQX	END=100550943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	100550944	.	T	.	.	LowGQX	.	GT	./.
chr1	100550945	.	T	.	.	LowGQX	END=100550992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	100551090	.	A	.	.	LowGQX	END=100551189	GT	./.
chr1	100553693	.	A	.	.	LowGQX	END=100553794	GT	./.
chr1	100568509	.	A	.	.	LowGQX	END=100568641	GT	./.
chr1	100571281	.	G	.	.	LowGQX	END=100571461	GT	./.
chr1	100572406	.	T	.	.	LowGQX	END=100572558	GT	./.
chr1	100572908	.	A	.	.	LowGQX	END=100573111	GT	./.
chr1	100573179	.	C	.	.	LowGQX	END=100573278	GT	./.
chr1	100573364	.	A	.	.	LowGQX	END=100573562	GT	./.
chr1	100575846	.	A	.	.	LowGQX	END=100576041	GT	./.
chr1	100584572	.	A	.	.	LowGQX	END=100584695	GT	./.
chr1	100585933	.	A	.	.	LowGQX	END=100586032	GT	./.
chr1	100586932	.	A	.	.	LowGQX	END=100587131	GT	./.
chr1	100587934	.	A	.	.	LowGQX	END=100588042	GT	./.
chr1	100588704	.	A	.	.	LowGQX	END=100588855	GT	./.
chr1	100591366	.	C	.	.	LowGQX	END=100591485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100591486	.	T	.	.	LowGQX	END=100591518	GT	./.
chr1	100598234	.	C	.	.	LowGQX	END=100598388	GT	./.
chr1	100598723	.	T	.	.	LowGQX	END=100598726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100598727	.	G	.	.	LowGQX	.	GT	./.
chr1	100598728	.	G	.	.	LowGQX	END=100598756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100598757	.	T	.	.	LowGQX	.	GT	./.
chr1	100598758	.	G	.	.	LowGQX	END=100598783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100598784	.	T	.	.	LowGQX	.	GT	./.
chr1	100598785	.	T	.	.	LowGQX	END=100598822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	100598823	.	G	.	.	LowGQX	.	GT	./.
chr1	100598824	.	G	.	.	LowGQX	END=100598849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100598850	.	T	.	.	LowGQX	.	GT	./.
chr1	100598851	.	G	.	.	LowGQX	END=100598873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100602412	.	A	.	.	LowGQX	END=100602511	GT	./.
chr1	100602559	.	T	.	.	LowGQX	END=100602658	GT	./.
chr1	100605133	.	A	.	.	LowGQX	END=100605286	GT	./.
chr1	100605723	.	T	.	.	LowGQX	END=100605822	GT	./.
chr1	100605962	.	A	.	.	LowGQX	END=100606073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100606074	.	T	.	.	LowGQX	END=100606097	GT	./.
chr1	100606406	.	A	.	.	LowGQX	END=100606577	GT	./.
chr1	100608621	.	A	.	.	LowGQX	END=100608779	GT	./.
chr1	100609553	.	T	.	.	LowGQX	END=100609645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100609646	.	A	.	.	LowGQX	END=100609687	GT	./.
chr1	100609688	.	G	.	.	LowGQX	END=100609712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100613448	.	A	.	.	LowGQX	END=100613560	GT	./.
chr1	100613561	.	C	.	.	LowGQX	END=100613639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	100613640	.	T	.	.	LowGQX	END=100613884	GT	./.
chr1	100614169	.	T	.	.	LowGQX	END=100614378	GT	./.
chr1	100614576	.	T	.	.	LowGQX	END=100614675	GT	./.
chr1	100614853	.	T	.	.	LowGQX	END=100615007	GT	./.
chr1	100617939	.	A	.	.	LowGQX	END=100618082	GT	./.
chr1	100620605	.	A	.	.	LowGQX	END=100620761	GT	./.
chr1	100621726	.	A	.	.	LowGQX	END=100621875	GT	./.
chr1	100623785	.	A	.	.	LowGQX	END=100623925	GT	./.
chr1	100624813	.	A	.	.	LowGQX	END=100624854	GT	./.
chr1	100624855	.	A	.	.	LowGQX	END=100624880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100624881	.	T	.	.	LowGQX	.	GT	./.
chr1	100624882	.	T	.	.	LowGQX	END=100624892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100624893	.	C	.	.	LowGQX	.	GT	./.
chr1	100624894	.	A	.	.	LowGQX	END=100624903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100624904	.	A	.	.	LowGQX	.	GT	./.
chr1	100624905	.	G	.	.	LowGQX	END=100624909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100624910	.	C	.	.	LowGQX	.	GT	./.
chr1	100624911	.	C	.	.	LowGQX	END=100624913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100624914	.	T	.	.	LowGQX	.	GT	./.
chr1	100624915	.	T	.	.	LowGQX	END=100624918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100624919	.	T	.	.	LowGQX	END=100624920	GT	./.
chr1	100624921	.	A	.	.	LowGQX	END=100624923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100624924	.	T	.	.	LowGQX	.	GT	./.
chr1	100624925	.	T	.	.	LowGQX	END=100624935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100624936	.	T	.	.	LowGQX	.	GT	./.
chr1	100624937	.	A	.	.	LowGQX	END=100624939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100624940	.	T	.	.	LowGQX	.	GT	./.
chr1	100624941	.	G	.	.	LowGQX	END=100624942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100624943	.	T	.	.	LowGQX	.	GT	./.
chr1	100624944	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100624945	.	C	.	.	LowGQX	END=100624946	GT	./.
chr1	100624947	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	100624948	.	T	.	.	LowGQX	END=100624949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100624950	.	T	.	.	LowGQX	.	GT	./.
chr1	100624951	.	C	.	.	LowGQX	END=100624952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100624953	.	G	.	.	LowGQX	END=100624954	GT	./.
chr1	100624955	.	A	.	.	LowGQX	END=100624968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100624969	.	G	.	.	LowGQX	.	GT	./.
chr1	100624970	.	G	.	.	LowGQX	END=100624973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100626020	.	A	.	.	LowGQX	END=100626129	GT	./.
chr1	100633958	.	A	.	.	LowGQX	END=100634117	GT	./.
chr1	100661760	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:54:60
chr1	100661761	.	T	.	.	PASS	END=100661779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	100661780	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:60
chr1	100661781	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:84:60
chr1	100661782	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:36:60
chr1	100661783	.	A	.	.	PASS	END=100661790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	100661791	.	C	.	.	PASS	END=100661798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	100661799	.	T	.	.	PASS	END=100661841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr1	100661842	.	T	C	615.37	PASS	BaseQRankSum=-0.259;DP=60;Dels=0.00;FS=4.195;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=-0.096;QD=10.26;ReadPosRankSum=1.978;SB=-363.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,32:60:99:645,0,468:60:99:0.533
chr1	100661843	.	T	.	.	PASS	END=100661891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:93:60
chr1	100661892	.	A	.	.	PASS	END=100661934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	100661935	.	T	.	.	PASS	END=100661947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:59
chr1	100661948	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:50:59
chr1	100661949	.	T	.	.	PASS	END=100661950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:59
chr1	100661951	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:42:59
chr1	100661952	.	T	.	.	PASS	END=100661959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:66:59
chr1	100661960	.	G	.	.	PASS	END=100661961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:36:59
chr1	100661962	.	T	.	.	PASS	END=100661967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:59
chr1	100661968	.	C	.	.	PASS	END=100661971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:33:59
chr1	100661972	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:54:59
chr1	100661973	.	A	.	.	PASS	END=100661974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:59
chr1	100661975	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:66:59
chr1	100661976	.	G	.	.	PASS	END=100661978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:30:59
chr1	100661979	.	C	.	.	PASS	END=100661982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:45:59
chr1	100661983	.	A	.	.	PASS	END=100661985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:54:59
chr1	100661986	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:45:59
chr1	100661987	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:2:59
chr1	100661988	.	A	.	.	PASS	END=100661989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:48:59
chr1	100661990	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:63:59
chr1	100661991	.	A	.	.	PASS	END=100662000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:59
chr1	100662001	.	A	.	.	PASS	END=100662015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:59
chr1	100662016	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:36:59
chr1	100662017	.	A	.	.	PASS	END=100662024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:59
chr1	100662025	.	G	.	.	PASS	END=100662029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:59
chr1	100671735	.	T	.	.	PASS	END=100671777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	100671778	.	A	.	.	PASS	END=100671908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	100671950	.	A	.	.	PASS	END=100671998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	100671999	.	A	.	.	PASS	END=100672046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	100672047	.	G	.	.	PASS	END=100672059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	100672060	.	T	C	1670.79	PASS	BaseQRankSum=1.837;DP=99;Dels=0.00;FS=0.844;HRun=1;HaplotypeScore=12.4677;MQ=60;MQ0=0;MQRankSum=0.039;QD=16.88;ReadPosRankSum=0.159;SB=-540.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,57:99:99:1701,0,1049:60:99:0.576
chr1	100672061	.	C	.	.	PASS	END=100672164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	100672165	.	C	.	.	PASS	END=100672176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	100672177	.	C	.	.	PASS	END=100672197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	100672198	.	A	.	.	PASS	END=100672239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	100672240	.	C	.	.	PASS	END=100672243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	100676199	.	T	.	.	PASS	END=100676211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	100676212	.	T	.	.	PASS	END=100676237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	100676238	.	T	.	.	PASS	END=100676245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	100676246	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:61:60
chr1	100676247	.	A	.	.	PASS	END=100676259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	100676260	.	A	.	.	PASS	END=100676293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	100676294	.	G	.	.	PASS	END=100676378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	100676619	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	100676620	.	C	.	.	LowGQX	END=100676624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	100676625	.	T	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	100676626	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	100676627	.	C	.	.	LowGQX	END=100676628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	100676629	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	100676630	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	100676631	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	100676632	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	100676633	.	G	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	100676634	.	A	.	.	LowGQX	END=100676635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	100676636	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	100676637	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	100676638	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	100676639	.	C	.	.	LowGQX	END=100676641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	100676642	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	100676643	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	100676644	.	T	.	.	LowGQX	END=100676648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	100676649	.	T	.	.	LowGQX	END=100676651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	100676652	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	100676653	.	G	.	42.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.02:60:12
chr1	100676654	.	A	.	.	LowGQX	END=100676657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	100676658	.	T	.	.	LowGQX	END=100676659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	100676660	.	A	.	.	LowGQX	END=100676662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	100676663	.	T	.	.	LowGQX	END=100676664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	100676665	.	T	.	.	LowGQX	END=100676669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	100676670	.	G	.	.	LowGQX	END=100676677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	100676678	.	A	.	.	LowGQX	END=100676679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	100676680	.	A	.	.	LowGQX	END=100676684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	100676685	.	G	.	.	LowGQX	END=100676689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	100676690	.	A	.	.	LowGQX	END=100676694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	100676695	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	100676696	.	C	.	.	LowGQX	END=100676711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	100676712	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	100676713	.	C	.	.	LowGQX	END=100676718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	100680322	.	C	.	.	PASS	END=100680347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	100680348	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:60:60
chr1	100680349	.	T	.	.	PASS	END=100680367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	100680368	.	C	.	.	PASS	END=100680386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	100680387	.	G	.	.	PASS	END=100680501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	100680502	.	G	.	.	PASS	END=100680518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	100680519	.	T	.	.	PASS	END=100680537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	100680538	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:57:61
chr1	100680539	.	C	.	.	PASS	END=100680546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:61
chr1	100680547	.	G	.	87.16	PASS	DP=38;MQ=61;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:30:38:57.17:61:57
chr1	100680548	.	C	.	.	PASS	END=100680550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:61
chr1	100680551	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:87:61
chr1	100680552	.	A	.	.	PASS	END=100680553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:61
chr1	100680554	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:87:61
chr1	100680555	.	T	.	.	PASS	END=100680556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:61
chr1	100680557	.	G	.	10.65	LowGQX	DP=31;MQ=61;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:21:31:0.05:61:0
chr1	100680558	.	T	.	.	PASS	END=100680559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:61
chr1	100680560	.	A	.	.	PASS	END=100680561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:61
chr1	100680562	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:84:61
chr1	100680563	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:30:61
chr1	100680564	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:66:61
chr1	100680565	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:48:61
chr1	100680566	.	T	.	.	PASS	END=100680567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:61
chr1	100680568	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:36:61
chr1	100680569	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:48:61
chr1	100680570	.	T	.	.	PASS	END=100680571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:61
chr1	100680572	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:42:61
chr1	100680573	.	A	.	.	PASS	END=100680574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:61
chr1	100680575	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:48:61
chr1	100680576	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:69:61
chr1	100680577	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:33:61
chr1	100680578	.	T	.	.	PASS	END=100680579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:36:61
chr1	100680580	.	A	.	.	PASS	END=100680582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:61
chr1	100680583	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:45:61
chr1	100680584	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:24:61
chr1	100680585	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:61
chr1	100680586	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:30:61
chr1	100680587	.	T	.	.	PASS	END=100680588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:61
chr1	100680589	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:30:61
chr1	100680590	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:54:61
chr1	100681488	.	C	.	.	PASS	END=100681500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	100681501	.	G	.	.	PASS	END=100681504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	100681505	.	T	.	.	PASS	END=100681512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	100681513	.	T	.	.	PASS	END=100681519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	100681520	.	T	.	.	PASS	END=100681547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	100681548	.	G	.	.	PASS	END=100681573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	100681574	.	A	.	.	PASS	END=100681592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	100681593	.	G	.	.	PASS	END=100681710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	100681711	.	T	.	.	PASS	END=100681738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	100681739	.	A	.	.	PASS	END=100681747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	100681748	.	A	.	.	PASS	END=100681778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	100681779	.	C	.	.	PASS	END=100681806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	100684131	.	C	.	.	PASS	END=100684140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	100684141	.	C	.	.	PASS	END=100684172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	100684173	.	A	.	.	PASS	END=100684234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	100684235	.	C	.	.	PASS	END=100684291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	100684292	.	C	.	.	PASS	END=100684325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	100684326	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:66:60
chr1	100684327	.	T	.	.	PASS	END=100684354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:84:60
chr1	100696238	.	A	.	.	PASS	END=100696241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	100696242	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	100696243	.	A	.	.	LowGQX	END=100696247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	100696248	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	100696249	.	A	.	.	LowGQX	END=100696250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	100696251	.	A	.	.	LowGQX	END=100696252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr1	100696253	.	T	.	.	LowGQX	END=100696254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	100696255	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:60
chr1	100696256	.	A	.	.	LowGQX	END=100696258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	100696259	.	T	.	.	LowGQX	END=100696260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	100696261	.	G	.	48.04	LowGQX	DP=8;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:8:18.05:60:18
chr1	100696262	.	T	.	.	LowGQX	END=100696268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	100696269	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	100696270	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	100696271	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	100696272	.	T	.	.	PASS	END=100696273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	100696274	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	100696275	.	C	.	.	PASS	END=100696276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	100696277	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	100696278	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	100696279	.	C	.	.	LowGQX	END=100696280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	100696281	.	T	.	.	PASS	END=100696289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	100696290	.	T	.	.	PASS	END=100696305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	100696306	.	T	.	.	PASS	END=100696314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	100696315	.	A	.	.	PASS	END=100696331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	100696332	.	A	.	.	PASS	END=100696375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	100696376	.	C	.	.	PASS	END=100696403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	100696404	.	A	.	.	PASS	END=100696463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	100696464	.	T	.	.	PASS	END=100696469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	100696470	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:33:60
chr1	100696471	.	C	.	.	PASS	END=100696521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	100700941	.	T	.	.	PASS	END=100701004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:60
chr1	100701005	.	T	.	.	PASS	END=100701039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	100701040	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr1	100701041	.	T	.	.	PASS	END=100701108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	100701109	.	A	.	.	PASS	END=100701115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	100701116	.	T	.	.	PASS	END=100701118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	100706266	.	A	.	.	PASS	END=100706286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	100706287	.	T	.	.	PASS	END=100706313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	100706314	.	T	.	.	PASS	END=100706341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	100706342	.	T	.	.	PASS	END=100706372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	100706373	.	A	.	.	PASS	END=100706491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	100715275	.	C	.	.	PASS	END=100715327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:81:60
chr1	100715328	.	G	.	.	PASS	END=100715396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	100715397	.	A	.	.	PASS	END=100715424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	100715425	.	G	.	.	PASS	END=100715427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	100731850	.	A	.	.	LowGQX	END=100732004	GT	./.
chr1	100732078	.	A	.	.	LowGQX	END=100732176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100732177	.	T	.	.	LowGQX	END=100732184	GT	./.
chr1	100733025	.	G	.	.	LowGQX	END=100733031	GT	./.
chr1	100733032	.	C	.	.	LowGQX	END=100733035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100733036	.	A	.	.	LowGQX	END=100733037	GT	./.
chr1	100733038	.	A	.	.	LowGQX	END=100733042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100733043	.	T	.	.	LowGQX	.	GT	./.
chr1	100733044	.	A	.	.	LowGQX	END=100733045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100733046	.	T	.	.	LowGQX	.	GT	./.
chr1	100733047	.	T	.	.	LowGQX	END=100733050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100733051	.	C	.	.	LowGQX	.	GT	./.
chr1	100733052	.	A	.	.	LowGQX	END=100733055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100733056	.	T	.	.	LowGQX	END=100733057	GT	./.
chr1	100733058	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100733059	.	T	.	.	LowGQX	END=100733060	GT	./.
chr1	100733061	.	G	.	.	LowGQX	END=100733070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100733071	.	G	.	.	LowGQX	END=100733072	GT	./.
chr1	100733073	.	C	.	.	LowGQX	END=100733075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100733076	.	A	.	.	LowGQX	.	GT	./.
chr1	100733077	.	G	.	.	LowGQX	END=100733078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100733079	.	T	.	.	LowGQX	.	GT	./.
chr1	100733080	.	C	.	.	LowGQX	END=100733081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100733082	.	A	.	.	LowGQX	.	GT	./.
chr1	100733083	.	G	.	.	LowGQX	END=100733090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100733091	.	C	.	.	LowGQX	END=100733092	GT	./.
chr1	100733093	.	A	.	.	LowGQX	END=100733095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100733096	.	T	.	.	LowGQX	END=100733097	GT	./.
chr1	100733098	.	G	.	.	LowGQX	END=100733100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100733101	.	T	.	.	LowGQX	.	GT	./.
chr1	100733102	.	T	.	.	LowGQX	END=100733106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100733107	.	T	.	.	LowGQX	.	GT	./.
chr1	100733108	.	G	.	.	LowGQX	END=100733124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100733706	.	A	.	.	LowGQX	END=100733853	GT	./.
chr1	100736111	.	A	.	.	LowGQX	END=100736238	GT	./.
chr1	100738878	.	T	.	.	LowGQX	END=100739030	GT	./.
chr1	100740378	.	A	.	.	LowGQX	END=100740424	GT	./.
chr1	100740425	.	A	.	.	LowGQX	END=100740523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100741153	.	A	.	.	LowGQX	END=100741281	GT	./.
chr1	100742734	.	G	.	.	LowGQX	END=100742893	GT	./.
chr1	100746727	.	T	.	.	LowGQX	END=100746880	GT	./.
chr1	100750782	.	A	.	.	LowGQX	END=100750881	GT	./.
chr1	100752653	.	A	.	.	LowGQX	END=100752714	GT	./.
chr1	100752715	.	C	.	.	LowGQX	END=100752761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100756957	.	A	.	.	LowGQX	END=100757062	GT	./.
chr1	100817289	.	A	.	.	LowGQX	END=100817388	GT	./.
chr1	100818486	.	C	.	.	LowGQX	END=100818638	GT	./.
chr1	100819314	.	T	.	.	LowGQX	END=100819465	GT	./.
chr1	100843090	.	C	.	.	LowGQX	END=100843189	GT	./.
chr1	100856286	.	A	.	.	LowGQX	END=100856494	GT	./.
chr1	100889768	.	T	.	.	LowGQX	END=100889867	GT	./.
chr1	100905472	.	T	.	.	LowGQX	END=100905571	GT	./.
chr1	100908418	.	T	.	.	LowGQX	END=100908571	GT	./.
chr1	100920899	.	T	.	.	LowGQX	END=100921054	GT	./.
chr1	100928205	.	A	.	.	LowGQX	END=100928439	GT	./.
chr1	100933510	.	A	.	.	LowGQX	END=100933709	GT	./.
chr1	100949846	.	A	.	.	LowGQX	END=100949922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	100949923	.	T	.	.	LowGQX	END=100950024	GT	./.
chr1	100960372	.	A	.	.	LowGQX	END=100960488	GT	./.
chr1	100961532	.	T	.	.	LowGQX	END=100961631	GT	./.
chr1	100963639	.	A	.	.	LowGQX	END=100963646	GT	./.
chr1	100963647	.	T	.	.	LowGQX	END=100963649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100963650	.	A	.	.	LowGQX	END=100963651	GT	./.
chr1	100963652	.	C	.	.	LowGQX	END=100963658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100963659	.	A	.	.	LowGQX	END=100963660	GT	./.
chr1	100963661	.	G	.	.	LowGQX	END=100963664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100963665	.	T	.	.	LowGQX	.	GT	./.
chr1	100963666	.	G	.	.	LowGQX	END=100963668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100963669	.	G	.	.	LowGQX	END=100963670	GT	./.
chr1	100963671	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100963672	.	A	.	.	LowGQX	.	GT	./.
chr1	100963673	.	C	.	.	LowGQX	END=100963682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100963683	.	A	.	.	LowGQX	.	GT	./.
chr1	100963684	.	T	.	.	LowGQX	END=100963692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100963693	.	G	.	.	LowGQX	.	GT	./.
chr1	100963694	.	C	.	.	LowGQX	END=100963695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100963696	.	C	.	.	LowGQX	.	GT	./.
chr1	100963697	.	T	.	.	LowGQX	END=100963698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100963699	.	T	.	.	LowGQX	.	GT	./.
chr1	100963700	.	C	.	.	LowGQX	END=100963701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100963702	.	C	.	.	LowGQX	.	GT	./.
chr1	100963703	.	C	.	.	LowGQX	END=100963710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100963711	.	A	.	.	LowGQX	.	GT	./.
chr1	100963712	.	C	.	.	LowGQX	END=100963748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100963749	.	T	.	.	LowGQX	.	GT	./.
chr1	100963750	.	G	.	.	LowGQX	END=100963765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100964483	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100964484	.	G	.	.	LowGQX	.	GT	./.
chr1	100964485	.	C	.	.	LowGQX	END=100964504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100964505	.	T	.	.	LowGQX	.	GT	./.
chr1	100964506	.	A	.	.	LowGQX	END=100964517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100964518	.	A	.	.	LowGQX	.	GT	./.
chr1	100964519	.	G	.	.	LowGQX	END=100964521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100964522	.	A	.	.	LowGQX	.	GT	./.
chr1	100964523	.	A	.	.	LowGQX	END=100964546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100964547	.	C	.	.	LowGQX	.	GT	./.
chr1	100964548	.	A	.	.	LowGQX	END=100964551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100964552	.	A	.	.	LowGQX	.	GT	./.
chr1	100964553	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100964554	.	C	.	.	LowGQX	.	GT	./.
chr1	100964555	.	A	.	.	LowGQX	END=100964569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100964570	.	T	.	.	LowGQX	END=100964595	GT	./.
chr1	100964596	.	C	.	.	LowGQX	END=100964601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100964602	.	T	.	.	LowGQX	.	GT	./.
chr1	100964603	.	A	.	.	LowGQX	END=100964611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100964612	.	T	.	.	LowGQX	.	GT	./.
chr1	100964613	.	T	.	.	LowGQX	END=100964628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100964629	.	G	.	.	LowGQX	.	GT	./.
chr1	100964630	.	C	.	.	LowGQX	END=100964634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100964635	.	T	.	.	LowGQX	.	GT	./.
chr1	100964636	.	A	.	.	LowGQX	END=100964637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100964638	.	C	.	.	LowGQX	.	GT	./.
chr1	100964639	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100964640	.	G	.	.	LowGQX	.	GT	./.
chr1	100964641	.	A	.	.	LowGQX	END=100964667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100964668	.	G	.	.	LowGQX	.	GT	./.
chr1	100964669	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100964670	.	A	.	.	LowGQX	.	GT	./.
chr1	100964671	.	C	.	.	LowGQX	END=100964724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	100964725	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	100964726	.	A	.	.	LowGQX	END=100964752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	100964753	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	100964754	.	T	.	.	LowGQX	END=100964764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	100964765	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	100964766	.	C	.	.	LowGQX	END=100964825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100964826	.	C	.	.	LowGQX	.	GT	./.
chr1	100964827	.	G	.	.	LowGQX	END=100964860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100964861	.	T	.	.	LowGQX	END=100964937	GT	./.
chr1	100970359	.	T	.	.	LowGQX	END=100970401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100970402	.	C	.	.	LowGQX	.	GT	./.
chr1	100970403	.	T	.	.	LowGQX	END=100970416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100970417	.	C	.	.	LowGQX	.	GT	./.
chr1	100970418	.	C	.	.	LowGQX	END=100970454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100970455	.	C	.	.	LowGQX	.	GT	./.
chr1	100970456	.	A	.	.	LowGQX	END=100970458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100983772	.	G	.	.	LowGQX	END=100983779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100983780	.	C	.	.	LowGQX	.	GT	./.
chr1	100983781	.	C	.	.	LowGQX	END=100983782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100983783	.	C	.	.	LowGQX	.	GT	./.
chr1	100983784	.	A	.	.	LowGQX	END=100983791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100983792	.	T	.	.	LowGQX	.	GT	./.
chr1	100983793	.	C	.	.	LowGQX	END=100983812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	100983813	.	C	.	.	LowGQX	END=100983871	GT	./.
chr1	101004511	.	G	.	.	LowGQX	END=101004636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	101004637	.	T	.	.	LowGQX	END=101005142	GT	./.
chr1	101005143	.	G	.	.	LowGQX	END=101005183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101005184	.	T	.	.	LowGQX	.	GT	./.
chr1	101005185	.	C	.	.	LowGQX	END=101005189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	101005190	.	T	.	.	LowGQX	.	GT	./.
chr1	101005191	.	C	.	.	LowGQX	END=101005192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	101005193	.	A	.	.	LowGQX	.	GT	./.
chr1	101005194	.	G	.	.	LowGQX	END=101005198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	101005199	.	T	.	.	LowGQX	.	GT	./.
chr1	101005200	.	C	.	.	LowGQX	END=101005209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	101005210	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	101005211	.	A	.	.	LowGQX	END=101005216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	101005217	.	A	.	.	LowGQX	.	GT	./.
chr1	101005218	.	C	.	.	LowGQX	END=101005219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	101005220	.	T	.	.	LowGQX	.	GT	./.
chr1	101005221	.	G	.	.	LowGQX	END=101005292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	101005293	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	101005294	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101005295	.	G	.	.	LowGQX	END=101005388	GT	./.
chr1	101005389	.	C	.	.	LowGQX	END=101005578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101005579	.	G	.	.	LowGQX	END=101005680	GT	./.
chr1	101185399	.	T	.	.	PASS	END=101185406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	101185407	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:64:60
chr1	101185408	.	C	.	.	PASS	END=101185439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	101185440	.	C	.	.	PASS	END=101185472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	101185473	.	T	.	.	PASS	END=101185498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	101186030	.	A	.	.	PASS	END=101186128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	101186129	.	C	.	.	PASS	END=101186225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	101186226	.	T	.	.	PASS	END=101186306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	101186307	.	T	.	.	PASS	END=101186309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	101188574	.	A	.	.	PASS	END=101188641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	101188642	.	A	.	.	PASS	END=101188721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	101188722	.	G	.	.	PASS	END=101188869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:273:99:60
chr1	101188870	.	A	.	.	PASS	END=101188898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	101190178	.	A	.	.	PASS	END=101190225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	101190226	.	G	.	.	PASS	END=101190280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	101190281	.	G	.	.	PASS	END=101190327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	101190328	.	T	.	.	PASS	END=101190441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	101190442	.	T	.	.	PASS	END=101190448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	101194661	.	A	.	.	PASS	END=101194686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	101194687	.	C	.	.	PASS	END=101194818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	101194819	.	A	.	.	PASS	END=101194855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:88:60
chr1	101194856	.	T	.	.	PASS	END=101194876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	101194877	.	T	.	.	PASS	END=101194933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	101194934	.	C	.	.	PASS	END=101194940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	101196752	.	A	.	.	PASS	END=101196763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	101196764	.	A	.	.	PASS	END=101196827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	101196828	.	G	.	.	PASS	END=101196885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	101196886	.	T	.	.	PASS	END=101196936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr1	101196937	.	A	.	.	PASS	END=101197045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:271:99:60
chr1	101197046	.	G	.	.	PASS	END=101197068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	101197069	.	T	.	.	PASS	END=101197076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	101197972	.	A	.	.	PASS	END=101198003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	101198004	.	G	.	.	PASS	END=101198168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	101198169	.	C	.	.	PASS	END=101198242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	101200056	.	A	.	.	PASS	END=101200076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	101200077	.	A	.	.	PASS	END=101200145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	101200146	.	T	.	.	PASS	END=101200200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	101200201	.	C	.	.	PASS	END=101200223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	101200224	.	T	.	.	PASS	END=101200234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	101200235	.	A	.	.	PASS	END=101200294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	101200295	.	A	.	.	PASS	END=101200326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	101203677	.	A	.	.	PASS	END=101203806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	101203807	.	A	.	.	PASS	END=101203819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	101203820	.	C	.	.	PASS	END=101203826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	101203827	.	G	A	3336.22	PASS	DP=109;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=5.7240;MQ=60;MQ0=0;QD=30.61;SB=-822.43	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,109:109:99:3336,256,0:60:99:1.000
chr1	101203828	.	T	.	.	PASS	END=101203841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	101339496	.	T	.	.	LowGQX	END=101339498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339499	.	T	.	.	LowGQX	.	GT	./.
chr1	101339500	.	A	.	.	LowGQX	END=101339744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339745	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	101339746	.	T	.	.	LowGQX	END=101339769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339770	.	G	.	.	LowGQX	.	GT	./.
chr1	101339771	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339772	.	G	.	.	LowGQX	END=101339773	GT	./.
chr1	101339774	.	A	.	.	LowGQX	END=101339775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339776	.	C	.	.	LowGQX	.	GT	./.
chr1	101339777	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339778	.	T	.	.	LowGQX	.	GT	./.
chr1	101339779	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339780	.	T	.	.	LowGQX	.	GT	./.
chr1	101339781	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339782	.	T	.	.	LowGQX	.	GT	./.
chr1	101339783	.	C	.	.	LowGQX	END=101339790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339791	.	G	.	.	LowGQX	END=101339792	GT	./.
chr1	101339793	.	A	.	.	LowGQX	END=101339794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339795	.	A	.	.	LowGQX	.	GT	./.
chr1	101339796	.	G	.	.	LowGQX	END=101339802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339803	.	G	.	.	LowGQX	.	GT	./.
chr1	101339804	.	T	.	.	LowGQX	END=101339808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339809	.	T	.	.	LowGQX	.	GT	./.
chr1	101339810	.	C	.	.	LowGQX	END=101339815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339816	.	T	.	.	LowGQX	.	GT	./.
chr1	101339817	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339818	.	A	.	.	LowGQX	.	GT	./.
chr1	101339819	.	T	.	.	LowGQX	END=101339832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339833	.	T	.	.	LowGQX	.	GT	./.
chr1	101339834	.	A	.	.	LowGQX	END=101339842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339843	.	T	.	.	LowGQX	.	GT	./.
chr1	101339844	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339845	.	A	.	.	LowGQX	.	GT	./.
chr1	101339846	.	G	.	.	LowGQX	END=101339855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339856	.	A	.	.	LowGQX	.	GT	./.
chr1	101339857	.	G	.	.	LowGQX	END=101339865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339866	.	A	.	.	LowGQX	.	GT	./.
chr1	101339867	.	G	.	.	LowGQX	END=101339873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101339874	.	T	.	.	LowGQX	END=101339988	GT	./.
chr1	101342336	.	G	.	.	LowGQX	END=101342435	GT	./.
chr1	101343030	.	A	.	.	LowGQX	END=101343461	GT	./.
chr1	101343942	.	G	.	.	LowGQX	END=101344041	GT	./.
chr1	101354262	.	C	.	.	LowGQX	END=101354342	GT	./.
chr1	101354343	.	C	.	.	LowGQX	END=101354361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101361809	.	G	.	.	LowGQX	END=101361908	GT	./.
chr1	101362124	.	A	.	.	LowGQX	END=101362229	GT	./.
chr1	101372406	.	A	.	.	LowGQX	END=101372523	GT	./.
chr1	101376613	.	C	.	.	LowGQX	END=101376712	GT	./.
chr1	101377666	.	A	.	.	LowGQX	END=101377781	GT	./.
chr1	101377782	.	T	.	.	LowGQX	END=101377784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101377785	.	C	.	.	LowGQX	.	GT	./.
chr1	101377786	.	A	.	.	LowGQX	END=101377796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101379217	.	A	.	.	LowGQX	END=101379364	GT	./.
chr1	101383609	.	T	.	.	LowGQX	END=101383624	GT	./.
chr1	101383625	.	C	.	.	LowGQX	END=101383708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101387260	.	A	.	.	LowGQX	END=101387439	GT	./.
chr1	101427380	.	T	.	.	LowGQX	END=101427479	GT	./.
chr1	101431293	.	T	.	.	LowGQX	END=101431476	GT	./.
chr1	101437798	.	C	.	.	LowGQX	END=101437897	GT	./.
chr1	101440340	.	T	.	.	LowGQX	END=101440439	GT	./.
chr1	101455962	.	G	.	.	LowGQX	END=101456189	GT	./.
chr1	101458191	.	A	.	.	LowGQX	END=101458298	GT	./.
chr1	101460636	.	C	.	.	LowGQX	END=101460684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101460685	.	A	.	.	LowGQX	.	GT	./.
chr1	101460686	.	C	.	.	LowGQX	END=101460700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	101460701	.	G	.	.	LowGQX	END=101460735	GT	./.
chr1	101467021	.	A	.	.	LowGQX	END=101467145	GT	./.
chr1	101479264	.	A	.	.	LowGQX	END=101479376	GT	./.
chr1	101487195	.	A	.	.	LowGQX	END=101487323	GT	./.
chr1	101490863	.	A	.	.	LowGQX	END=101491001	GT	./.
chr1	101704539	.	C	.	.	PASS	END=101704563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	101704564	.	G	.	.	PASS	END=101704591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	101704592	.	G	.	.	PASS	END=101704664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	101704665	.	A	.	.	PASS	END=101704709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:245:99:60
chr1	101704710	.	G	.	.	PASS	END=101704874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:300:99:60
chr1	101704875	.	T	.	.	PASS	END=101704965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:277:99:60
chr1	101704966	.	C	.	.	PASS	END=101704986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:314:99:60
chr1	101704987	.	G	.	.	PASS	END=101705118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:273:99:60
chr1	101705119	.	C	.	.	PASS	END=101705217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:264:99:60
chr1	101705218	.	C	.	.	PASS	END=101705363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:60
chr1	101705364	.	T	.	.	PASS	END=101705441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	101705442	.	T	.	.	PASS	END=101705616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	101705617	.	C	.	.	PASS	END=101705660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	101705661	.	C	.	.	PASS	END=101705709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	101705710	.	C	.	.	PASS	END=101705733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	101705734	.	C	.	.	PASS	END=101705775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	101705776	.	T	.	.	PASS	END=101705791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	101705792	.	C	.	.	PASS	END=101705802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	101705803	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:54:60
chr1	101705804	.	A	.	.	PASS	END=101705822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	101705823	.	A	.	.	PASS	END=101705832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:69:60
chr1	101705833	.	C	.	.	PASS	END=101705840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	101705841	.	T	.	.	PASS	END=101705842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	101705843	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:60
chr1	101705844	.	C	.	.	PASS	END=101705849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	101705850	.	T	.	.	PASS	END=101705853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	101705854	.	T	.	.	PASS	END=101705859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	101705860	.	G	.	.	PASS	END=101705867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	101705868	.	T	.	.	PASS	END=101705869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	101705870	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	101705871	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	101705872	.	G	.	.	LowGQX	END=101705874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	101705875	.	A	.	.	PASS	END=101705879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	101705880	.	T	.	.	LowGQX	END=101705881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	101705882	.	C	.	.	PASS	END=101705883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	101705884	.	C	.	.	LowGQX	END=101705887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	101705888	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	101705889	.	A	.	.	LowGQX	END=101705891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	101705892	.	G	.	.	LowGQX	END=101705893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	101705894	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	101705895	.	G	.	.	LowGQX	END=101705899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	101705900	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	101705901	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	101705902	.	A	.	.	LowGQX	END=101705904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	101705905	.	T	.	.	LowGQX	END=101705913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	101705914	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	101705915	.	G	.	.	LowGQX	END=101705926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	101705927	.	T	.	.	LowGQX	END=101705941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	101705942	.	T	.	.	LowGQX	END=101705945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	102269792	.	G	.	.	LowGQX	END=102270324	GT	./.
chr1	102270325	.	G	.	.	LowGQX	END=102270350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	102270351	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	102270352	.	A	.	.	LowGQX	END=102270396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	102270397	.	C	.	.	LowGQX	.	GT	./.
chr1	102270398	.	C	.	.	LowGQX	END=102270419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	102270420	.	A	.	.	LowGQX	.	GT	./.
chr1	102270421	.	T	.	.	LowGQX	END=102270428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	102270429	.	C	.	.	LowGQX	.	GT	./.
chr1	102270430	.	A	.	.	LowGQX	END=102270447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	102270448	.	A	.	.	LowGQX	.	GT	./.
chr1	102270449	.	G	.	.	LowGQX	END=102270473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	102271630	.	A	.	.	LowGQX	END=102271740	GT	./.
chr1	102278625	.	T	.	.	LowGQX	END=102278724	GT	./.
chr1	102290580	.	A	.	.	LowGQX	END=102290596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	102290597	.	A	.	.	LowGQX	END=102290725	GT	./.
chr1	102290726	.	T	.	.	LowGQX	END=102290736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	102290737	.	T	.	.	LowGQX	.	GT	./.
chr1	102290738	.	C	.	.	LowGQX	END=102290764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	102290765	.	T	.	.	LowGQX	.	GT	./.
chr1	102290766	.	C	.	.	LowGQX	END=102290768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	102290769	.	A	.	.	LowGQX	.	GT	./.
chr1	102290770	.	G	.	.	LowGQX	END=102290774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	102290775	.	G	.	.	LowGQX	.	GT	./.
chr1	102290776	.	A	.	.	LowGQX	END=102290803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	102296196	.	T	.	.	LowGQX	END=102296385	GT	./.
chr1	102302433	.	A	.	.	LowGQX	END=102302520	GT	./.
chr1	102302521	.	G	.	.	LowGQX	END=102302531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	102302532	.	T	.	.	LowGQX	.	GT	./.
chr1	102302533	.	C	.	.	LowGQX	END=102302534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	102302535	.	T	.	.	LowGQX	.	GT	./.
chr1	102302536	.	G	.	.	LowGQX	END=102302567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	102302568	.	G	.	.	LowGQX	.	GT	./.
chr1	102302569	.	G	.	.	LowGQX	END=102302579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	102302580	.	G	.	.	LowGQX	.	GT	./.
chr1	102302581	.	T	.	.	LowGQX	END=102302583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	102312400	.	C	.	.	LowGQX	END=102312529	GT	./.
chr1	102462289	.	A	.	.	LowGQX	END=102462388	GT	./.
chr1	103343524	.	G	.	.	PASS	END=103343565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	103343566	.	G	.	.	PASS	END=103343622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	103343623	.	C	.	.	PASS	END=103343676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	103343677	.	T	.	.	PASS	END=103343772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	103345188	.	A	.	.	PASS	END=103345205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	103345206	.	C	.	.	PASS	END=103345227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	103345228	.	C	.	.	PASS	END=103345277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:60
chr1	103345278	.	G	.	.	PASS	END=103345382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:298:99:60
chr1	103345383	.	G	.	.	PASS	END=103345485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:60
chr1	103345486	.	A	.	.	PASS	END=103345523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	103347202	.	G	.	.	PASS	END=103347212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	103347213	.	A	.	.	PASS	END=103347227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	103347228	.	G	.	.	PASS	END=103347230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	103347231	.	T	.	.	PASS	END=103347236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	103347237	.	T	.	.	PASS	END=103347242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	103347243	.	A	.	.	PASS	END=103347353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	103347354	.	G	.	.	PASS	END=103347372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	103348704	.	A	.	.	PASS	END=103348719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	103348720	.	G	.	.	PASS	END=103348863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	103348864	.	T	.	.	PASS	END=103348901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	103348902	.	T	.	.	PASS	END=103348918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	103352312	.	C	.	.	PASS	END=103352324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	103352325	.	G	.	.	PASS	END=103352331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	103352332	.	A	.	.	PASS	END=103352342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	103352343	.	G	.	.	PASS	END=103352353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	103352354	.	T	.	.	PASS	END=103352381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	103352382	.	G	.	.	PASS	END=103352404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	103352405	.	T	.	.	PASS	END=103352428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:87:60
chr1	103352429	.	C	.	.	PASS	END=103352450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	103352451	.	A	G	1154.24	PASS	BaseQRankSum=-1.062;DP=84;Dels=0.00;FS=1.921;HRun=0;HaplotypeScore=7.6808;MQ=60;MQ0=0;MQRankSum=0.908;QD=13.74;ReadPosRankSum=-1.595;SB=-568.95	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:36,48:84:99:1184,0,850:60:99:0.571
chr1	103352452	.	A	.	.	PASS	END=103352548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	103352549	.	T	.	.	PASS	END=103352563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	103352564	.	T	.	.	PASS	END=103352588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	103352589	.	C	.	.	PASS	END=103352612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	103352613	.	C	.	.	PASS	END=103352621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	103352622	.	A	.	.	PASS	END=103352635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	103352636	.	C	.	.	PASS	END=103352648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	103352649	.	A	.	.	PASS	END=103352650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	103352651	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:9:60
chr1	103352652	.	T	.	.	PASS	END=103352663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	103354080	.	G	.	.	PASS	END=103354111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	103354112	.	C	.	.	PASS	END=103354121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	103354122	.	C	.	.	PASS	END=103354137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	103354138	.	A	G	2132.23	PASS	BaseQRankSum=3.645;DP=133;Dels=0.00;FS=4.418;HRun=1;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=0.848;QD=16.03;ReadPosRankSum=0.075;SB=-353.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:60,72:133:99:2162,0,1523:60:99:0.545
chr1	103354139	.	C	.	.	PASS	END=103354171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	103354172	.	C	.	.	PASS	END=103354383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	103354384	.	T	.	.	PASS	END=103354427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	103354428	.	A	G	2127.50	PASS	BaseQRankSum=1.126;DP=163;Dels=0.00;FS=11.736;HRun=0;HaplotypeScore=11.4134;MQ=60;MQ0=0;MQRankSum=0.104;QD=13.05;ReadPosRankSum=0.801;SB=-532.59	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:79,83:163:99:2157,0,1842:60:99:0.512
chr1	103354429	.	C	.	.	PASS	END=103354453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	103354454	.	G	.	.	PASS	END=103354470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	103354471	.	A	.	.	PASS	END=103354509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	103354510	.	C	.	.	PASS	END=103354526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	103354960	.	T	.	.	PASS	END=103355005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:82:59
chr1	103355006	.	C	.	.	PASS	END=103355013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	103355014	.	A	.	.	PASS	END=103355109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	103355110	.	A	.	.	PASS	END=103355159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	103355160	.	T	.	.	PASS	END=103355169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	103355956	.	T	.	.	PASS	END=103355969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	103355970	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:36:60
chr1	103355971	.	T	.	.	PASS	END=103355995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:63:60
chr1	103355996	.	T	.	.	PASS	END=103356048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	103356049	.	G	.	.	PASS	END=103356057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	103356058	.	T	.	.	PASS	END=103356060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:42:60
chr1	103356061	.	C	.	.	PASS	END=103356068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	103356069	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:42:60
chr1	103356070	.	A	.	.	PASS	END=103356101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	103363628	.	A	.	.	PASS	END=103363675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	103363676	.	C	.	.	PASS	END=103363688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	103363689	.	C	.	.	PASS	END=103363712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	103363713	.	C	.	.	PASS	END=103363785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	103364171	.	A	.	.	PASS	END=103364213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	103364214	.	A	.	.	PASS	END=103364226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	103364227	.	G	.	.	PASS	END=103364272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	103364273	.	T	.	.	PASS	END=103364322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	103364323	.	C	.	.	PASS	END=103364377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	103364378	.	T	.	.	PASS	END=103364380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	103364456	.	A	.	.	PASS	END=103364473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	103364474	.	T	.	.	PASS	END=103364554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	103364555	.	A	.	.	PASS	END=103364558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	103364559	.	A	.	.	PASS	END=103364588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	103364589	.	A	.	.	PASS	END=103364601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	103377652	.	A	.	.	PASS	END=103377764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	103377765	.	G	.	.	PASS	END=103377788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	103377789	.	C	.	.	PASS	END=103377819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	103379142	.	A	.	.	PASS	END=103379210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	103379211	.	A	.	.	PASS	END=103379247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	103379248	.	T	.	.	PASS	END=103379295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	103379296	.	A	.	.	PASS	END=103379297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	103379845	.	A	.	.	PASS	END=103379901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	103379902	.	A	.	.	PASS	END=103379917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	103379918	.	G	A	848.35	PASS	BaseQRankSum=4.138;DP=61;Dels=0.00;FS=2.266;HRun=1;HaplotypeScore=11.3630;MQ=60;MQ0=0;MQRankSum=0.542;QD=13.91;ReadPosRankSum=0.628;SB=-387.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:32,29:61:99:878,0,720:60:99:0.475
chr1	103379919	.	G	.	.	PASS	END=103380012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	103380209	.	C	.	.	PASS	END=103380233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	103380234	.	C	.	.	PASS	END=103380376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:59
chr1	103380377	.	G	.	3.45	LowGQX	DP=84;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:67:84:0.01:59:0
chr1	103380378	.	T	.	.	PASS	END=103380379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:59
chr1	103380379	.	T	TA	352.03	PASS	BaseQRankSum=-0.195;DP=86;FS=7.306;HRun=13;HaplotypeScore=567.8338;MQ=59;MQ0=0;MQRankSum=-0.539;QD=4.09;ReadPosRankSum=2.322;SB=-108.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:59,19:85:99:391,0,522:59:99:0.244
chr1	103380380	.	A	.	.	PASS	END=103380392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:59
chr1	103380393	.	G	.	17.80	LowGQX	DP=70;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:46:69:0.25:60:0
chr1	103380394	.	A	.	.	PASS	END=103380395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	103380396	.	G	.	114.25	PASS	DP=72;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:57:72:84.25:60:84
chr1	103380397	.	A	.	.	PASS	END=103380408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:84:60
chr1	103381124	.	T	.	.	PASS	END=103381246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	103381247	.	A	.	.	PASS	END=103381251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	103381252	.	A	.	.	PASS	END=103381276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	103381277	.	A	.	.	PASS	END=103381283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	103381284	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:66:60
chr1	103381285	.	T	.	.	PASS	END=103381291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	103385814	.	A	.	.	PASS	END=103385908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	103385909	.	T	.	.	PASS	END=103385932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	103385933	.	A	.	.	PASS	END=103385950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	103385951	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:72:60
chr1	103385952	.	A	.	.	PASS	END=103385971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	103387021	.	T	.	.	PASS	END=103387178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	103388829	.	T	.	.	PASS	END=103388848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	103388849	.	G	.	.	PASS	END=103388902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	103388903	.	C	.	.	PASS	END=103388945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	103388946	.	C	.	.	PASS	END=103388996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	103399954	.	G	.	.	PASS	END=103399966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	103399967	.	T	.	.	PASS	END=103399993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	103399994	.	G	.	.	PASS	END=103400027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	103400028	.	G	.	.	PASS	END=103400154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	103400155	.	A	.	.	PASS	END=103400163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	103400563	.	T	.	.	PASS	END=103400667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	103400668	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:75:60
chr1	103400669	.	C	.	.	PASS	END=103400692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	103400693	.	A	.	.	PASS	END=103400703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	103400704	.	G	.	.	PASS	END=103400708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr1	103400709	.	C	.	.	PASS	END=103400716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	103400717	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:36:60
chr1	103400718	.	C	.	.	PASS	END=103400720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	103404538	.	A	.	.	PASS	END=103404554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	103404555	.	A	.	.	PASS	END=103404605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	103404606	.	A	.	.	PASS	END=103404638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:88:60
chr1	103404639	.	T	.	.	PASS	END=103404694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	103404695	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:99:60
chr1	103405822	.	A	.	.	PASS	END=103405870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	103405871	.	A	.	.	PASS	END=103405891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	103405892	.	G	A	1555.66	PASS	BaseQRankSum=0.263;DP=124;Dels=0.00;FS=0.681;HRun=0;HaplotypeScore=7.5754;MQ=60;MQ0=0;MQRankSum=-0.643;QD=12.55;ReadPosRankSum=0.773;SB=-926.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:60,64:124:99:1586,0,1653:60:99:0.516
chr1	103405893	.	T	.	.	PASS	END=103406013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	103406014	.	T	.	.	PASS	END=103406041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	103412354	.	T	.	.	PASS	END=103412364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	103412365	.	G	.	.	PASS	END=103412464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	103412465	.	A	.	.	PASS	END=103412487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	103412488	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:54:60
chr1	103412489	.	T	.	.	PASS	END=103412508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	103412509	.	A	.	.	PASS	END=103412519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	103412520	.	A	.	.	PASS	END=103412528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	103412529	.	G	.	.	PASS	END=103412561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	103412562	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:33:60
chr1	103412563	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:72:60
chr1	103427359	.	A	.	.	PASS	END=103427408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	103427409	.	T	.	.	PASS	END=103427475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	103427476	.	C	.	.	PASS	END=103427526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	103427681	.	C	.	.	PASS	END=103427768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	103427769	.	C	.	.	PASS	END=103427802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	103427803	.	C	.	.	PASS	END=103427827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	103427828	.	A	.	.	PASS	END=103427843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	103427844	.	T	A	587.21	PASS	BaseQRankSum=-0.549;DP=46;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=-0.198;QD=12.77;ReadPosRankSum=-1.186;SB=-197.73	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:23,23:46:99:617,0,571:60:99:0.500
chr1	103427845	.	C	.	.	PASS	END=103427872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	103428158	.	A	.	.	PASS	END=103428232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	103428233	.	A	.	.	PASS	END=103428367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	103430980	.	T	.	.	PASS	END=103430992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	103430993	.	A	.	.	PASS	END=103431125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	103431126	.	C	.	.	PASS	END=103431138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	103431139	.	A	.	.	PASS	END=103431147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	103435712	.	T	.	.	PASS	END=103435732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	103435733	.	C	.	.	PASS	END=103435835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	103435836	.	T	.	.	PASS	END=103435879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	103440323	.	T	.	.	PASS	END=103440349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	103440350	.	A	.	.	PASS	END=103440474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	103440475	.	A	.	.	PASS	END=103440487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	103440488	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr1	103440489	.	G	.	.	PASS	END=103440490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	103444206	.	T	.	.	PASS	END=103444250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	103444251	.	G	.	.	PASS	END=103444278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	103444279	.	G	.	.	PASS	END=103444359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	103444363	.	G	.	.	PASS	END=103444403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	103444404	.	T	.	.	PASS	END=103444459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	103444460	.	C	.	.	PASS	END=103444497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	103444498	.	A	.	.	PASS	END=103444520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	103444548	.	A	.	.	PASS	END=103444618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	103444619	.	T	.	.	PASS	END=103444628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	103444629	.	T	.	.	PASS	END=103444660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	103444661	.	C	.	.	PASS	END=103444678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	103444679	.	T	G	2239.14	PASS	DP=65;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;QD=34.45;SB=-235.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,65:65:99:2272,178,0:60:99:1.000
chr1	103444680	.	T	.	.	PASS	END=103444699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	103444700	.	A	.	.	PASS	END=103444711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	103444887	.	C	.	.	PASS	END=103444897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	103444898	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:45:60
chr1	103444899	.	A	.	.	PASS	END=103444901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	103444902	.	T	.	.	PASS	END=103444929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	103444930	.	T	.	.	PASS	END=103445000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	103445001	.	T	.	.	PASS	END=103445033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	103445034	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:57:60
chr1	103445035	.	A	.	.	PASS	END=103445042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	103445111	.	G	.	.	PASS	END=103445139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	103445140	.	A	.	.	PASS	END=103445151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	103445152	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:9:60
chr1	103445153	.	A	.	.	PASS	END=103445157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:60
chr1	103445158	.	C	.	.	PASS	END=103445170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	103445171	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	103445172	.	G	.	.	PASS	END=103445175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:60
chr1	103445176	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	103445177	.	A	.	.	PASS	END=103445187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	103445188	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	103445189	.	A	.	.	PASS	END=103445190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	103445191	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	103445192	.	T	.	.	PASS	END=103445198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	103445199	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:1:60
chr1	103445200	.	C	.	.	PASS	END=103445210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	103449643	.	A	.	.	PASS	END=103449688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	103449689	.	T	.	.	PASS	END=103449722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	103449723	.	G	.	.	PASS	END=103449745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	103449746	.	C	.	.	PASS	END=103449774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	103449775	.	G	.	.	PASS	END=103449776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	103449777	.	A	.	.	PASS	END=103449787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	103449788	.	T	.	.	PASS	END=103449798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	103453138	.	A	.	.	PASS	END=103453165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	103453166	.	T	.	.	PASS	END=103453217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	103453218	.	G	.	.	PASS	END=103453333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	103453334	.	G	.	.	PASS	END=103453347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	103455023	.	A	.	.	PASS	END=103455049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	103455050	.	G	.	.	PASS	END=103455080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	103455081	.	C	.	.	PASS	END=103455178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	103461369	.	A	.	.	PASS	END=103461426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	103461427	.	C	.	.	PASS	END=103461464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	103461465	.	C	.	.	PASS	END=103461507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	103461508	.	T	A	5239.26	PASS	DP=171;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;QD=30.64;SB=-2531.47	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,171:171:99:5239,388,0:60:99:1.000
chr1	103461509	.	T	.	.	PASS	END=103461574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	103461575	.	A	.	.	PASS	END=103461579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	103461580	.	C	.	.	PASS	END=103461593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	103461594	.	G	.	.	PASS	END=103461613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	103461614	.	T	.	.	PASS	END=103461634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	103461635	.	A	.	.	PASS	END=103461649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	103462578	.	G	.	.	PASS	END=103462638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	103462639	.	A	.	.	PASS	END=103462702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	103462703	.	C	.	.	PASS	END=103462722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	103462723	.	C	.	.	PASS	END=103462731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	103463803	.	A	.	.	PASS	END=103463846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	103463847	.	C	.	.	PASS	END=103463900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	103463901	.	C	.	.	PASS	END=103463960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	103467430	.	G	.	.	PASS	END=103467462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:79:60
chr1	103467463	.	A	.	.	PASS	END=103467503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	103467504	.	G	.	.	PASS	END=103467560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	103467561	.	C	.	.	PASS	END=103467576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	103467921	.	T	.	.	PASS	END=103467932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	103467933	.	A	.	.	PASS	END=103467970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	103467971	.	G	.	.	PASS	END=103468045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	103468046	.	G	.	.	PASS	END=103468087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	103468088	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:169:99:60
chr1	103468252	.	C	.	.	PASS	END=103468337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	103468338	.	C	.	.	PASS	END=103468398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	103468708	.	G	.	.	PASS	END=103468875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	103469949	.	T	.	.	PASS	END=103470011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	103470012	.	A	.	.	PASS	END=103470083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	103470084	.	A	.	.	PASS	END=103470095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	103470113	.	T	.	.	PASS	END=103470161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	103470162	.	A	.	.	PASS	END=103470204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	103470205	.	G	.	.	PASS	END=103470217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	103470218	.	C	.	.	PASS	END=103470226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	103470227	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:39:60
chr1	103470228	.	A	.	.	PASS	END=103470239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	103470240	.	A	.	.	PASS	END=103470250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	103470251	.	G	.	.	PASS	END=103470268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	103471341	.	T	.	.	PASS	END=103471374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	103471375	.	A	.	.	PASS	END=103471389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	103471390	.	T	.	.	PASS	END=103471456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	103471456	.	CCAT	C	2485.39	PASS	BaseQRankSum=0.233;DP=129;FS=16.453;HRun=0;HaplotypeScore=149.6104;MQ=60;MQ0=0;MQRankSum=-0.227;QD=19.27;ReadPosRankSum=-0.871;SB=-778.83	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:68,55:129:99:2524,0,2350:60:99:0.447
chr1	103471457	.	C	.	207.56	PASS	DP=126;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:68:68:99:60:99
chr1	103471458	.	A	.	198.53	PASS	DP=125;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:67:67:99:60:99
chr1	103471459	.	T	.	198.55	PASS	DP=125;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:67:67:99:60:99
chr1	103471460	.	C	.	.	PASS	END=103471498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	103471571	.	T	.	.	PASS	END=103471651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	103471652	.	C	.	.	PASS	END=103471728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	103471755	.	A	.	.	PASS	END=103471819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	103471820	.	T	.	.	PASS	END=103471860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	103471861	.	C	.	.	PASS	END=103471883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	103471884	.	A	.	.	PASS	END=103471909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	103471910	.	T	.	.	PASS	END=103471922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	103473968	.	C	.	.	PASS	END=103474030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	103474031	.	A	.	.	PASS	END=103474120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	103474121	.	C	.	.	PASS	END=103474123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	103477917	.	A	.	.	PASS	END=103477941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	103477942	.	T	.	.	PASS	END=103477967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	103477968	.	C	.	.	PASS	END=103478041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	103478042	.	A	.	.	PASS	END=103478076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	103480016	.	C	.	.	PASS	END=103480059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	103480060	.	G	.	.	PASS	END=103480125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	103480126	.	T	.	.	PASS	END=103480163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	103480164	.	A	.	.	PASS	END=103480201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	103481173	.	A	.	.	PASS	END=103481205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	103481206	.	A	.	.	PASS	END=103481229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	103481230	.	C	.	.	PASS	END=103481240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	103481241	.	T	.	.	PASS	END=103481349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	103483317	.	T	.	.	PASS	END=103483420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	103483421	.	T	.	.	PASS	END=103483433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	103483434	.	A	.	.	PASS	END=103483447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	103483448	.	A	.	.	PASS	END=103483478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	103483479	.	T	.	.	PASS	END=103483489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	103484323	.	T	.	.	PASS	END=103484343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	103484344	.	G	.	.	PASS	END=103484362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	103484363	.	C	.	.	PASS	END=103484466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	103487212	.	G	.	.	PASS	END=103487249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:98:60
chr1	103487250	.	C	.	.	PASS	END=103487376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	103488247	.	A	.	.	LowGQX	END=103488258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	103488259	.	A	.	.	LowGQX	END=103488261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	103488262	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	103488263	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	103488264	.	A	.	.	LowGQX	END=103488265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	103488266	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	103488267	.	T	.	.	PASS	END=103488268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	103488269	.	C	.	.	PASS	END=103488278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	103488279	.	G	.	.	PASS	END=103488281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	103488282	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:48:60
chr1	103488283	.	A	.	.	PASS	END=103488289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:93:60
chr1	103488290	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:65:60
chr1	103488291	.	A	.	.	PASS	END=103488319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr1	103488320	.	T	.	.	PASS	END=103488331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	103488332	.	C	.	.	PASS	END=103488373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	103488374	.	T	.	.	PASS	END=103488429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	103488430	.	A	.	.	PASS	END=103488476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	103488477	.	C	.	.	PASS	END=103488489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	103488490	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:46:60
chr1	103488491	.	T	.	.	PASS	END=103488508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	103488509	.	C	.	.	PASS	END=103488522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	103488523	.	T	.	.	PASS	END=103488542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	103488543	.	C	.	.	PASS	END=103488550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	103488551	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:48:60
chr1	103488552	.	G	.	.	PASS	END=103488581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	103488582	.	A	.	.	PASS	END=103488603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	103491026	.	T	.	.	PASS	END=103491030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	103491031	.	T	.	.	PASS	END=103491032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	103491033	.	T	.	.	PASS	END=103491044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	103491045	.	G	.	.	PASS	END=103491051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	103491052	.	A	.	.	PASS	END=103491059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	103491060	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:60:60
chr1	103491061	.	T	.	.	PASS	END=103491066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	103491067	.	T	.	.	PASS	END=103491102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	103491103	.	G	.	.	PASS	END=103491177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	103491178	.	A	.	.	PASS	END=103491212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	103491213	.	T	.	.	PASS	END=103491220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	103491305	.	G	.	.	PASS	END=103491316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	103491317	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:75:60
chr1	103491318	.	T	.	.	PASS	END=103491321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	103491322	.	C	.	.	PASS	END=103491384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	103491385	.	C	.	.	PASS	END=103491472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	103491473	.	T	.	.	PASS	END=103491505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:80:60
chr1	103491506	.	T	.	.	PASS	END=103491559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:86:60
chr1	103491721	.	A	.	.	PASS	END=103491731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	103491732	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:60:60
chr1	103491733	.	A	.	.	PASS	END=103491741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	103491742	.	C	.	.	PASS	END=103491763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	103491764	.	G	.	.	PASS	END=103491804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	103491805	.	G	.	.	PASS	END=103491832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	103491833	.	T	.	.	PASS	END=103491892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	103491893	.	A	.	.	PASS	END=103491939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	103496603	.	T	.	.	PASS	END=103496608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	103496609	.	A	.	.	PASS	END=103496617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	103496618	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:33:27:60
chr1	103496619	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:75:60
chr1	103496620	.	G	T	992.57	PASS	DP=35;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;QD=28.36;SB=-496.96	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,35:35:75.25:1026,75,0:60:75:1.000
chr1	103496621	.	A	.	.	PASS	END=103496626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	103496627	.	A	.	.	PASS	END=103496652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	103496653	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:71:60
chr1	103496654	.	T	.	.	PASS	END=103496702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:78:60
chr1	103496703	.	G	.	.	PASS	END=103496761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	103496762	.	C	.	.	PASS	END=103496797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr1	103496798	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:60:60
chr1	103496799	.	C	.	.	PASS	END=103496805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr1	103496805	.	GA	G	810.12	LowGQ;LowGQX	BaseQRankSum=0.749;DP=51;FS=6.895;HRun=13;HaplotypeScore=177.6241;MQ=60;MQ0=0;MQRankSum=-1.737;QD=15.88;ReadPosRankSum=1.068;SB=-437.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:15,31:51:1.84:849,2,0:60:2:0.674
chr1	103496806	.	A	.	.	LowGQX	DP=51;MQ=60;MQ0=0	GT:AD:DP:MQ	.:13:16:60
chr1	103496807	.	A	.	.	PASS	END=103496824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	103496825	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:68:60
chr1	103496826	.	A	.	.	PASS	END=103496847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	103496848	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:57:60
chr1	103496849	.	A	.	.	PASS	END=103496851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	103540123	.	C	.	.	PASS	END=103540158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	103540159	.	T	.	.	PASS	END=103540300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	103540301	.	G	.	.	PASS	END=103540322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	103540323	.	C	.	.	PASS	END=103540337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	103540338	.	T	.	.	PASS	END=103540387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	103544163	.	A	.	.	PASS	END=103544184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	103544185	.	C	.	.	PASS	END=103544222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	103544223	.	G	.	.	PASS	END=103544251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	103544252	.	G	.	.	PASS	END=103544388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	103544389	.	C	.	.	PASS	END=103544460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	103544461	.	C	.	.	PASS	END=103544478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	103548310	.	G	.	.	PASS	END=103548318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	103548319	.	C	G	1551.06	PASS	BaseQRankSum=2.528;DP=114;Dels=0.00;FS=3.748;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-0.351;QD=13.61;ReadPosRankSum=0.924;SB=-509.75	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:57,57:114:99:1581,0,1540:60:99:0.500
chr1	103548320	.	T	.	.	PASS	END=103548388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	103548389	.	G	.	.	PASS	END=103548459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	103548460	.	C	.	.	PASS	END=103548561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	103548562	.	T	.	.	PASS	END=103548579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	103573578	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:44:60
chr1	103573579	.	C	.	.	PASS	END=103573589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	103573590	.	A	.	.	PASS	END=103573591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	103573592	.	G	.	.	PASS	END=103573602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	103573603	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:69:60
chr1	103573604	.	C	.	.	PASS	END=103573625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	103573626	.	T	.	.	PASS	END=103573661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	103573662	.	T	.	.	PASS	END=103573698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	103573699	.	C	.	.	PASS	END=103573729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	103573730	.	T	.	.	PASS	END=103573756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	103573757	.	T	.	.	PASS	END=103573785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	104068692	.	A	.	.	LowGQX	END=104068884	GT	./.
chr1	104070226	.	A	.	.	LowGQX	END=104070300	GT	./.
chr1	104070301	.	C	.	.	LowGQX	END=104070315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104070316	.	G	.	.	LowGQX	.	GT	./.
chr1	104070317	.	A	.	.	LowGQX	END=104070390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104076310	.	A	.	.	LowGQX	END=104076479	GT	./.
chr1	104077335	.	T	.	.	LowGQX	END=104077487	GT	./.
chr1	104077951	.	G	.	.	LowGQX	END=104078063	GT	./.
chr1	104078732	.	G	.	.	LowGQX	END=104078831	GT	./.
chr1	104079963	.	G	.	.	LowGQX	END=104079971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	104079972	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	104079973	.	T	.	.	LowGQX	END=104079984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	104079985	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	104079986	.	A	.	.	LowGQX	END=104080029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104080030	.	C	.	.	LowGQX	END=104080106	GT	./.
chr1	104083930	.	C	.	.	LowGQX	END=104084070	GT	./.
chr1	104084071	.	G	.	.	LowGQX	END=104084150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104085917	.	G	.	.	LowGQX	END=104086069	GT	./.
chr1	104087562	.	G	.	.	LowGQX	END=104087751	GT	./.
chr1	104088867	.	A	.	.	LowGQX	END=104089018	GT	./.
chr1	104089578	.	T	.	.	LowGQX	END=104089677	GT	./.
chr1	104093522	.	A	.	.	LowGQX	END=104093689	GT	./.
chr1	104093690	.	G	.	.	LowGQX	END=104093695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	104094272	.	A	.	.	LowGQX	END=104094422	GT	./.
chr1	104114223	.	A	.	.	LowGQX	END=104114239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	104114240	.	T	.	.	LowGQX	.	GT	./.
chr1	104114241	.	T	.	.	LowGQX	END=104114243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	104114244	.	T	.	.	LowGQX	.	GT	./.
chr1	104114245	.	T	.	.	LowGQX	END=104114246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	104114247	.	T	.	.	LowGQX	.	GT	./.
chr1	104114248	.	C	.	.	LowGQX	END=104114280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	104114281	.	A	.	.	LowGQX	END=104114394	GT	./.
chr1	104114730	.	A	.	.	LowGQX	END=104114746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104114747	.	G	.	.	LowGQX	.	GT	./.
chr1	104114748	.	A	.	.	LowGQX	END=104114753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104114754	.	T	.	.	LowGQX	END=104114755	GT	./.
chr1	104114756	.	G	.	.	LowGQX	END=104114779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104114780	.	T	.	.	LowGQX	.	GT	./.
chr1	104114781	.	G	.	.	LowGQX	END=104114783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104114784	.	G	.	.	LowGQX	.	GT	./.
chr1	104114785	.	G	.	.	LowGQX	END=104114788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104114789	.	A	.	.	LowGQX	END=104114880	GT	./.
chr1	104115683	.	A	.	.	LowGQX	END=104115884	GT	./.
chr1	104116328	.	A	.	.	LowGQX	END=104116562	GT	./.
chr1	104116880	.	A	.	.	LowGQX	END=104117017	GT	./.
chr1	104117843	.	A	.	.	LowGQX	END=104117915	GT	./.
chr1	104117916	.	A	.	.	LowGQX	END=104117918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104117919	.	G	.	.	LowGQX	.	GT	./.
chr1	104117920	.	A	.	.	LowGQX	END=104117951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104117952	.	C	.	.	LowGQX	.	GT	./.
chr1	104117953	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104117954	.	T	.	.	LowGQX	.	GT	./.
chr1	104117955	.	T	.	.	LowGQX	END=104117962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104117963	.	G	.	.	LowGQX	.	GT	./.
chr1	104117964	.	C	.	.	LowGQX	END=104117969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104118061	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104118062	.	G	.	.	LowGQX	.	GT	./.
chr1	104118063	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104118064	.	C	.	.	LowGQX	END=104118135	GT	./.
chr1	104118136	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104118137	.	G	.	.	LowGQX	END=104118138	GT	./.
chr1	104118139	.	C	.	.	LowGQX	END=104118150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104118151	.	C	.	.	LowGQX	END=104118152	GT	./.
chr1	104118153	.	A	.	.	LowGQX	END=104118154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104118155	.	A	.	.	LowGQX	.	GT	./.
chr1	104118156	.	T	.	.	LowGQX	END=104118159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104118160	.	A	.	.	LowGQX	.	GT	./.
chr1	104118161	.	A	.	.	LowGQX	END=104118164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104120110	.	A	.	.	LowGQX	.	GT	./.
chr1	104120111	.	G	.	.	LowGQX	END=104120113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104120114	.	T	.	.	LowGQX	.	GT	./.
chr1	104120115	.	G	.	.	LowGQX	END=104120122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104120123	.	T	.	.	LowGQX	.	GT	./.
chr1	104120124	.	T	.	.	LowGQX	END=104120134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104120135	.	A	.	.	LowGQX	.	GT	./.
chr1	104120136	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104120137	.	C	.	.	LowGQX	.	GT	./.
chr1	104120138	.	A	.	.	LowGQX	END=104120139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104120140	.	A	.	.	LowGQX	.	GT	./.
chr1	104120141	.	T	.	.	LowGQX	END=104120150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104120151	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	104120152	.	T	.	.	LowGQX	END=104120154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104120155	.	T	.	.	LowGQX	.	GT	./.
chr1	104120156	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104120157	.	A	.	.	LowGQX	.	GT	./.
chr1	104120158	.	A	.	.	LowGQX	END=104120160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104120161	.	A	.	.	LowGQX	.	GT	./.
chr1	104120162	.	A	.	.	LowGQX	END=104120165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104120166	.	A	.	.	LowGQX	END=104120168	GT	./.
chr1	104120169	.	A	.	.	LowGQX	END=104120178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104120179	.	A	.	.	LowGQX	.	GT	./.
chr1	104120180	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104120181	.	A	.	.	LowGQX	END=104120182	GT	./.
chr1	104120183	.	T	.	.	LowGQX	END=104120184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104120185	.	C	.	.	LowGQX	.	GT	./.
chr1	104120186	.	T	.	.	LowGQX	END=104120196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104120197	.	A	.	.	LowGQX	END=104120232	GT	./.
chr1	104120340	.	A	.	.	LowGQX	END=104120368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:24
chr1	104120369	.	G	.	.	LowGQX	END=104120392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:40
chr1	104120393	.	G	.	33.01	LowGQX	DP=3;MQ=40;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:40:3
chr1	104120394	.	T	.	.	LowGQX	END=104120395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:40
chr1	104120396	.	T	.	33.01	LowGQX	DP=3;MQ=40;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:40:3
chr1	104120397	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:40
chr1	104120398	.	A	.	33.01	LowGQX	DP=3;MQ=40;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:40:3
chr1	104120399	.	T	.	.	LowGQX	END=104120401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:40
chr1	104120402	.	T	.	33.01	LowGQX	DP=3;MQ=40;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:40:3
chr1	104120403	.	G	.	.	LowGQX	END=104120469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:40
chr1	104121931	.	A	.	.	LowGQX	END=104121932	GT	./.
chr1	104121933	.	G	.	.	LowGQX	END=104121936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104121937	.	T	.	.	LowGQX	END=104121938	GT	./.
chr1	104121939	.	T	.	.	LowGQX	END=104121941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104121942	.	T	.	.	LowGQX	.	GT	./.
chr1	104121943	.	T	.	.	LowGQX	END=104121948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104121949	.	T	.	.	LowGQX	.	GT	./.
chr1	104121950	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104121951	.	G	.	.	LowGQX	.	GT	./.
chr1	104121952	.	C	.	.	LowGQX	END=104121953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104121954	.	A	.	.	LowGQX	.	GT	./.
chr1	104121955	.	A	.	.	LowGQX	END=104121957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104121958	.	G	.	.	LowGQX	END=104121960	GT	./.
chr1	104121961	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104121962	.	T	.	.	LowGQX	.	GT	./.
chr1	104121963	.	T	.	.	LowGQX	END=104121965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104121966	.	T	.	.	LowGQX	.	GT	./.
chr1	104121967	.	G	.	.	LowGQX	END=104121968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104121969	.	T	.	.	LowGQX	.	GT	./.
chr1	104121970	.	G	.	.	LowGQX	END=104121976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104121977	.	A	.	.	LowGQX	END=104121978	GT	./.
chr1	104121979	.	T	.	.	LowGQX	END=104121981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104121982	.	G	.	.	LowGQX	END=104121984	GT	./.
chr1	104121985	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104121986	.	T	.	.	LowGQX	.	GT	./.
chr1	104121987	.	C	.	.	LowGQX	END=104121988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104121989	.	T	.	.	LowGQX	END=104121990	GT	./.
chr1	104121991	.	T	.	.	LowGQX	END=104122021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104122022	.	G	.	.	LowGQX	.	GT	./.
chr1	104122023	.	C	.	.	LowGQX	END=104122024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104122025	.	T	.	.	LowGQX	.	GT	./.
chr1	104122026	.	T	.	.	LowGQX	END=104122030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104122031	.	T	.	.	LowGQX	.	GT	./.
chr1	104122032	.	C	.	.	LowGQX	END=104122033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104122034	.	A	.	.	LowGQX	.	GT	./.
chr1	104122035	.	C	.	.	LowGQX	END=104122036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104122037	.	T	.	.	LowGQX	.	GT	./.
chr1	104122038	.	T	.	.	LowGQX	END=104122046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104122047	.	T	.	.	LowGQX	.	GT	./.
chr1	104122048	.	G	.	.	LowGQX	END=104122082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	104122083	.	G	.	.	LowGQX	END=104122124	GT	./.
chr1	104160061	.	A	.	.	LowGQX	END=104160232	GT	./.
chr1	104160574	.	A	.	.	LowGQX	END=104160724	GT	./.
chr1	104161491	.	C	.	.	LowGQX	END=104161732	GT	./.
chr1	104162170	.	C	.	.	LowGQX;LowMQ	END=104162310	GT	./.
chr1	104162311	.	A	.	.	LowGQX	END=104162460	GT	./.
chr1	104163110	.	T	.	.	LowGQX	END=104163308	GT	./.
chr1	104164156	.	T	.	.	LowGQX	END=104164323	GT	./.
chr1	104164414	.	A	.	.	LowGQX	END=104164572	GT	./.
chr1	104166425	.	T	.	.	LowGQX	END=104166608	GT	./.
chr1	104166675	.	A	.	.	LowGQX;LowMQ	END=104166832	GT	./.
chr1	104166833	.	A	.	.	LowGQX	END=104166885	GT	./.
chr1	104168166	.	T	.	.	LowGQX	END=104168275	GT	./.
chr1	104168276	.	A	.	.	LowGQX;LowMQ	END=104168370	GT	./.
chr1	104198920	.	T	.	.	LowGQX;LowMQ	END=104199090	GT	./.
chr1	104199091	.	T	.	.	LowGQX	END=104199122	GT	./.
chr1	104199433	.	A	.	.	LowGQX	END=104199614	GT	./.
chr1	104200343	.	T	.	.	LowGQX	END=104200682	GT	./.
chr1	104200989	.	A	.	.	LowGQX	END=104201348	GT	./.
chr1	104201999	.	G	.	.	LowGQX;LowMQ	END=104202149	GT	./.
chr1	104202150	.	A	.	.	LowGQX	END=104202167	GT	./.
chr1	104202980	.	A	.	.	LowGQX	END=104203148	GT	./.
chr1	104203197	.	A	.	.	LowGQX	END=104203355	GT	./.
chr1	104205236	.	A	.	.	LowGQX	END=104205399	GT	./.
chr1	104205465	.	A	.	.	LowGQX	END=104205635	GT	./.
chr1	104206940	.	T	.	.	LowGQX	END=104207144	GT	./.
chr1	104230058	.	T	.	.	LowGQX	END=104230262	GT	./.
chr1	104231578	.	A	.	.	LowGQX	END=104231746	GT	./.
chr1	104231773	.	G	.	.	LowGQX	END=104231936	GT	./.
chr1	104233863	.	G	.	.	LowGQX	END=104234152	GT	./.
chr1	104234153	.	G	.	.	LowGQX;LowMQ	END=104234234	GT	./.
chr1	104235016	.	A	.	.	LowGQX	END=104235184	GT	./.
chr1	104235849	.	T	.	.	LowGQX;LowMQ	END=104236042	GT	./.
chr1	104236043	.	C	.	.	LowGQX	END=104236157	GT	./.
chr1	104236158	.	G	.	.	LowGQX;LowMQ	END=104236214	GT	./.
chr1	104236215	.	T	.	.	LowGQX	END=104236218	GT	./.
chr1	104236528	.	T	.	.	LowGQX	END=104236718	GT	./.
chr1	104236719	.	C	.	.	LowGQX;LowMQ	END=104236760	GT	./.
chr1	104236761	.	C	.	.	LowGQX	END=104236867	GT	./.
chr1	104237600	.	A	.	.	LowGQX	END=104237778	GT	./.
chr1	104238081	.	G	.	.	LowGQX	END=104238220	GT	./.
chr1	104238221	.	C	.	.	LowGQX;LowMQ	END=104238263	GT	./.
chr1	104257454	.	T	.	.	LowGQX	END=104257553	GT	./.
chr1	104258324	.	G	.	.	LowGQX;LowMQ	END=104258492	GT	./.
chr1	104258541	.	G	.	.	LowGQX;LowMQ	END=104258631	GT	./.
chr1	104258632	.	A	.	.	LowGQX	END=104258699	GT	./.
chr1	104260552	.	A	.	.	LowGQX	END=104260731	GT	./.
chr1	104260792	.	A	.	.	LowGQX	END=104260851	GT	./.
chr1	104260852	.	T	.	.	LowGQX;LowMQ	END=104260968	GT	./.
chr1	104262293	.	T	.	.	LowGQX	END=104262490	GT	./.
chr1	104293059	.	T	.	.	LowGQX	END=104293128	GT	./.
chr1	104293129	.	G	.	.	LowGQX;LowMQ	END=104293261	GT	./.
chr1	104293572	.	A	.	.	LowGQX	END=104293753	GT	./.
chr1	104294482	.	T	.	.	LowGQX	END=104294821	GT	./.
chr1	104295128	.	A	.	.	LowGQX	END=104295487	GT	./.
chr1	104296138	.	G	.	.	LowGQX	END=104296306	GT	./.
chr1	104297069	.	T	.	.	LowGQX;LowMQ	END=104297215	GT	./.
chr1	104297216	.	C	.	.	LowGQX	END=104297224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:37
chr1	104297225	.	T	.	.	LowGQX	END=104297245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:52
chr1	104297275	.	C	.	.	LowGQX	END=104297409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	104297410	.	T	.	.	LowGQX	END=104297493	GT	./.
chr1	104299374	.	A	.	.	LowGQX;LowMQ	END=104299384	GT	./.
chr1	104299385	.	G	.	.	LowGQX	END=104299537	GT	./.
chr1	104299603	.	A	.	.	LowGQX	END=104299619	GT	./.
chr1	104299620	.	C	.	.	LowGQX;LowMQ	END=104299768	GT	./.
chr1	104299769	.	C	.	.	LowGQX	END=104299773	GT	./.
chr1	104301078	.	T	.	.	LowGQX	END=104301282	GT	./.
chr1	107599337	.	G	.	.	LowGQX	END=107599592	GT	./.
chr1	107599593	.	G	.	.	LowGQX	END=107599762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	107599763	.	T	.	.	LowGQX	END=107600434	GT	./.
chr1	107600435	.	G	.	.	LowGQX	END=107600447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	107600448	.	T	.	.	LowGQX	.	GT	./.
chr1	107600449	.	T	.	.	LowGQX	END=107600507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	107600508	.	T	.	.	LowGQX	.	GT	./.
chr1	107600509	.	G	.	.	LowGQX	END=107600533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	107600534	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	107600535	.	A	.	.	LowGQX	END=107600536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	107600537	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	107600538	.	G	.	.	LowGQX	END=107600540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	107600541	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	107600542	.	A	.	.	LowGQX	END=107600593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	107691214	.	A	.	.	PASS	END=107691280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	107691281	.	C	.	.	PASS	END=107691375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	107691376	.	C	.	.	PASS	END=107691428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	107691429	.	T	.	.	PASS	END=107691452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	107691453	.	T	.	.	PASS	END=107691462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	107691463	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:113:99:60
chr1	107866902	.	A	.	.	PASS	END=107866907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	107866908	.	A	.	.	PASS	END=107866919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	107866920	.	G	.	.	PASS	END=107866943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	107866944	.	C	.	.	PASS	END=107867033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	107867034	.	A	.	.	PASS	END=107867153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:60
chr1	107867154	.	T	.	.	PASS	END=107867283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:286:99:60
chr1	107867284	.	G	.	.	PASS	END=107867394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:305:99:60
chr1	107867395	.	G	.	.	PASS	END=107867446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr1	107867447	.	A	.	.	PASS	END=107867517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	107867518	.	G	.	.	PASS	END=107867546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	107937774	.	A	.	.	PASS	END=107937795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	107937796	.	C	.	.	PASS	END=107937844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	107937845	.	C	.	.	PASS	END=107937921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	107937922	.	C	.	.	PASS	END=107937947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	107937948	.	T	.	.	PASS	END=107937952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	107938042	.	C	.	.	PASS	END=107938045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	107938046	.	T	.	.	PASS	END=107938049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	107938050	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	107938051	.	T	.	.	PASS	END=107938067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	107938068	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	107938069	.	C	.	.	PASS	END=107938071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	107938072	.	C	.	.	PASS	END=107938097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	107938098	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:39:60
chr1	107938099	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:3:60
chr1	107938100	.	T	.	.	PASS	END=107938113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	107938114	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	107938115	.	G	.	.	PASS	END=107938118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	107938119	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	107938120	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	107938121	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	107938122	.	G	.	.	LowGQX	END=107938123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	107938124	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	107938125	.	C	.	.	LowGQX	END=107938129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	107938130	.	G	.	.	LowGQX	END=107938135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	107938136	.	T	.	.	LowGQX	END=107938137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	107938138	.	C	.	.	LowGQX	END=107938141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	107946155	.	A	.	.	LowGQX	END=107946314	GT	./.
chr1	107950271	.	A	.	.	PASS	END=107950299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	107950300	.	C	.	.	PASS	END=107950370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	107950438	.	A	.	.	PASS	END=107950443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	107950444	.	T	.	.	PASS	END=107950459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	107950460	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:45:60
chr1	107950461	.	A	.	.	PASS	END=107950473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	107950474	.	T	.	.	PASS	END=107950480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	107950481	.	C	.	.	PASS	END=107950491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	107950492	.	T	.	.	PASS	END=107950493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	107950494	.	A	.	.	PASS	END=107950518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	107950519	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:60
chr1	107950520	.	G	.	.	PASS	END=107950533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	107950534	.	A	.	.	PASS	END=107950535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	107950536	.	A	.	.	PASS	END=107950537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	107961185	.	T	.	.	PASS	END=107961211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:81:60
chr1	107961212	.	G	.	.	PASS	END=107961274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	107961275	.	C	.	.	PASS	END=107961284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	107963686	.	A	.	.	PASS	END=107963785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	107973257	.	A	.	.	PASS	END=107973280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:99:60
chr1	107973281	.	T	.	.	PASS	END=107973304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	107973305	.	A	.	.	PASS	END=107973317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	107973318	.	C	.	.	PASS	END=107973330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	107973331	.	A	.	.	PASS	END=107973339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	107973340	.	A	.	.	PASS	END=107973356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	107973371	.	G	.	.	PASS	END=107973402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	107973403	.	C	.	.	PASS	END=107973486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr1	107973487	.	G	.	.	PASS	END=107973530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	107973531	.	T	.	.	PASS	END=107973539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	107979286	.	G	.	.	PASS	END=107979306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	107979307	.	G	.	.	PASS	END=107979347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	107979348	.	G	.	.	PASS	END=107979384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	107979385	.	T	.	.	PASS	END=107979395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	107979396	.	A	C	1850.01	PASS	BaseQRankSum=-0.388;DP=67;Dels=0.00;FS=3.658;HRun=0;HaplotypeScore=6.6812;MQ=60;MQ0=0;MQRankSum=0.750;QD=27.61;ReadPosRankSum=1.163;SB=-1006.26	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,66:67:99:1883,108,0:60:99:0.985
chr1	107979397	.	A	.	.	PASS	END=107979421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	107998194	.	A	.	.	LowGQX	END=107998293	GT	./.
chr1	108002978	.	T	.	.	LowGQX	END=108003077	GT	./.
chr1	108023231	.	A	.	.	PASS	END=108023252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	108023253	.	C	.	.	PASS	END=108023262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	108023263	.	G	.	.	PASS	END=108023279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	108023280	.	T	.	.	PASS	END=108023341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	108023342	.	G	.	.	PASS	END=108023419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	108023420	.	G	.	.	PASS	END=108023468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	108023469	.	C	.	.	PASS	END=108023501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:96:60
chr1	108023502	.	G	.	.	PASS	END=108023539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	108115924	.	T	.	.	LowGQX	END=108115972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108115973	.	A	.	.	LowGQX	.	GT	./.
chr1	108115974	.	T	.	.	LowGQX	END=108115988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108115989	.	G	.	.	LowGQX	.	GT	./.
chr1	108115990	.	C	.	.	LowGQX	END=108115991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108115992	.	C	.	.	LowGQX	.	GT	./.
chr1	108115993	.	A	.	.	LowGQX	END=108116007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108116008	.	G	.	.	LowGQX	.	GT	./.
chr1	108116009	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108116010	.	A	.	.	LowGQX	END=108116011	GT	./.
chr1	108116012	.	C	.	.	LowGQX	END=108116016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108116017	.	A	.	.	LowGQX	.	GT	./.
chr1	108116018	.	C	.	.	LowGQX	END=108116023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108116667	.	A	.	.	LowGQX	END=108116822	GT	./.
chr1	108119006	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108119007	.	G	.	.	LowGQX	.	GT	./.
chr1	108119008	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108119009	.	A	.	.	LowGQX	.	GT	./.
chr1	108119010	.	G	.	.	LowGQX	END=108119016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108119017	.	A	.	.	LowGQX	.	GT	./.
chr1	108119018	.	C	.	.	LowGQX	END=108119024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108119025	.	G	.	.	LowGQX	END=108119026	GT	./.
chr1	108119027	.	A	.	.	LowGQX	END=108119029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108119030	.	G	.	.	LowGQX	.	GT	./.
chr1	108119031	.	G	.	.	LowGQX	END=108119038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108119039	.	G	.	.	LowGQX	.	GT	./.
chr1	108119040	.	G	.	.	LowGQX	END=108119042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108119043	.	A	.	.	LowGQX	END=108119044	GT	./.
chr1	108119045	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108119046	.	A	.	.	LowGQX	.	GT	./.
chr1	108119047	.	A	.	.	LowGQX	END=108119049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108119050	.	T	.	.	LowGQX	.	GT	./.
chr1	108119051	.	G	.	.	LowGQX	END=108119055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108119056	.	C	.	.	LowGQX	END=108119099	GT	./.
chr1	108119100	.	T	.	.	LowGQX	END=108119102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108119103	.	A	.	.	LowGQX	.	GT	./.
chr1	108119104	.	G	.	.	LowGQX	END=108119105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108138832	.	A	.	.	LowGQX	END=108138913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108138914	.	G	.	.	LowGQX	END=108138915	GT	./.
chr1	108138916	.	T	.	.	LowGQX	END=108138959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108138960	.	G	.	.	LowGQX	.	GT	./.
chr1	108138961	.	T	.	.	LowGQX	END=108138965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108144953	.	T	.	.	LowGQX	END=108145166	GT	./.
chr1	108145667	.	A	.	.	LowGQX	END=108145787	GT	./.
chr1	108152521	.	A	.	.	LowGQX	.	GT	./.
chr1	108152522	.	A	.	.	LowGQX	END=108152530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108152531	.	C	.	.	LowGQX	END=108152532	GT	./.
chr1	108152533	.	T	.	.	LowGQX	END=108152534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108152535	.	A	.	.	LowGQX	.	GT	./.
chr1	108152536	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108152537	.	C	.	.	LowGQX	END=108152538	GT	./.
chr1	108152539	.	T	.	.	LowGQX	END=108152540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108152541	.	T	.	.	LowGQX	.	GT	./.
chr1	108152542	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108152543	.	T	.	.	LowGQX	.	GT	./.
chr1	108152544	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108152545	.	A	.	.	LowGQX	END=108152546	GT	./.
chr1	108152547	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108152548	.	C	.	.	LowGQX	END=108152620	GT	./.
chr1	108160172	.	A	.	.	LowGQX	END=108160271	GT	./.
chr1	108185189	.	A	.	.	LowGQX	END=108185417	GT	./.
chr1	108211940	.	G	.	.	LowGQX	END=108212099	GT	./.
chr1	108226083	.	T	.	.	LowGQX	END=108226117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108226118	.	A	.	.	LowGQX	.	GT	./.
chr1	108226119	.	C	.	.	LowGQX	END=108226138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108226139	.	A	.	.	LowGQX	.	GT	./.
chr1	108226140	.	G	.	.	LowGQX	END=108226182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108230978	.	A	.	.	LowGQX	END=108231005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108231006	.	T	.	.	LowGQX	END=108231130	GT	./.
chr1	108247170	.	A	.	.	LowGQX	END=108247220	GT	./.
chr1	108247221	.	G	.	.	LowGQX	END=108247274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108247580	.	A	.	.	LowGQX	END=108247589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108247590	.	C	.	.	LowGQX	END=108247685	GT	./.
chr1	108291588	.	A	.	.	LowGQX	END=108291747	GT	./.
chr1	108292082	.	A	.	.	LowGQX	END=108292261	GT	./.
chr1	108293677	.	A	.	.	LowGQX	END=108293831	GT	./.
chr1	108298043	.	A	.	.	LowGQX	END=108298044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	108298045	.	A	.	.	LowGQX	END=108298113	GT	./.
chr1	108298114	.	C	.	.	LowGQX	END=108298142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108299868	.	A	.	.	LowGQX	END=108299967	GT	./.
chr1	108303404	.	A	.	.	LowGQX	END=108303475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108303476	.	C	.	.	LowGQX	.	GT	./.
chr1	108303477	.	C	.	.	LowGQX	END=108303488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108303489	.	T	.	.	LowGQX	END=108303503	GT	./.
chr1	108307696	.	A	.	.	LowGQX	END=108307855	GT	./.
chr1	108309067	.	A	.	.	LowGQX	END=108309226	GT	./.
chr1	108311048	.	C	.	.	LowGQX	END=108311147	GT	./.
chr1	108313196	.	G	.	.	LowGQX	END=108313354	GT	./.
chr1	108315355	.	A	.	.	LowGQX	END=108315467	GT	./.
chr1	108319781	.	A	.	.	LowGQX	END=108319935	GT	./.
chr1	108322036	.	A	.	.	LowGQX	END=108322135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108327990	.	C	.	.	LowGQX	END=108328149	GT	./.
chr1	108417521	.	A	.	.	LowGQX	END=108417641	GT	./.
chr1	108507286	.	A	.	.	LowGQX	END=108507397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108507398	.	C	.	.	LowGQX	END=108507493	GT	./.
chr1	108679273	.	C	.	.	LowGQX	END=108679297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	108679298	.	T	.	.	LowGQX	END=108679482	GT	./.
chr1	108681678	.	A	.	.	LowGQX	END=108681832	GT	./.
chr1	108686163	.	A	.	.	LowGQX	END=108686198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108686199	.	A	.	.	LowGQX	END=108686334	GT	./.
chr1	108690899	.	A	.	.	LowGQX	END=108691010	GT	./.
chr1	108697603	.	A	.	.	LowGQX	END=108697759	GT	./.
chr1	108700082	.	A	.	.	LowGQX	END=108700244	GT	./.
chr1	108703802	.	A	.	.	LowGQX	END=108703961	GT	./.
chr1	108724501	.	A	.	.	LowGQX	END=108724510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108724511	.	A	.	.	LowGQX	.	GT	./.
chr1	108724512	.	A	.	.	LowGQX	END=108724516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108724517	.	G	.	.	LowGQX	END=108724656	GT	./.
chr1	108728398	.	G	.	.	LowGQX	END=108728578	GT	./.
chr1	108735116	.	A	.	.	LowGQX	END=108735117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	108735118	.	C	.	.	LowGQX	.	GT	./.
chr1	108735119	.	T	.	.	LowGQX	END=108735122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	108735123	.	C	.	.	LowGQX	.	GT	./.
chr1	108735124	.	T	.	.	LowGQX	END=108735126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	108735127	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	108735128	.	T	.	.	LowGQX	END=108735134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	108735135	.	A	.	.	LowGQX	END=108735204	GT	./.
chr1	108735205	.	G	.	.	LowGQX	END=108735230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108735231	.	A	.	.	LowGQX	.	GT	./.
chr1	108735232	.	G	.	.	LowGQX	END=108735245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108742550	.	C	.	.	LowGQX	END=108742611	GT	./.
chr1	108742612	.	T	.	.	LowGQX	END=108742692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	108742693	.	C	.	.	LowGQX	END=108742762	GT	./.
chr1	108766298	.	G	.	.	LowGQX	END=108766383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	108766384	.	A	.	.	LowGQX	END=108766397	GT	./.
chr1	108769300	.	C	.	.	LowGQX	END=108769536	GT	./.
chr1	108771541	.	C	.	.	LowGQX	END=108771778	GT	./.
chr1	108774866	.	T	.	.	LowGQX	END=108775050	GT	./.
chr1	108775698	.	A	.	.	LowGQX	END=108775745	GT	./.
chr1	108775746	.	A	.	.	LowGQX;LowMQ	END=108775857	GT	./.
chr1	108776842	.	A	.	.	LowGQX;LowMQ	END=108776891	GT	./.
chr1	108776892	.	G	.	.	LowGQX	END=108777033	GT	./.
chr1	108777774	.	T	.	.	LowGQX	END=108777933	GT	./.
chr1	108778891	.	C	.	.	LowGQX	END=108778956	GT	./.
chr1	108778957	.	G	.	.	LowGQX;LowMQ	END=108779069	GT	./.
chr1	108779571	.	T	.	.	LowGQX	END=108779725	GT	./.
chr1	108779825	.	T	.	.	LowGQX	END=108779984	GT	./.
chr1	108781298	.	T	.	.	LowGQX;LowMQ	END=108781430	GT	./.
chr1	108781431	.	A	.	.	LowGQX	END=108781497	GT	./.
chr1	108781498	.	G	.	.	LowGQX;LowMQ	END=108781647	GT	./.
chr1	108782388	.	T	.	.	LowGQX	END=108782538	GT	./.
chr1	108783500	.	G	.	.	LowGQX	END=108783535	GT	./.
chr1	108783536	.	G	.	.	LowGQX;LowMQ	END=108783849	GT	./.
chr1	108784644	.	T	.	.	LowGQX	END=108784795	GT	./.
chr1	108786194	.	T	.	.	LowGQX	END=108786404	GT	./.
chr1	108993212	.	A	.	.	LowGQX	END=108993422	GT	./.
chr1	108994760	.	C	.	.	LowGQX	END=108994911	GT	./.
chr1	108995731	.	C	.	.	LowGQX	END=108995733	GT	./.
chr1	108995734	.	C	.	.	LowGQX;LowMQ	END=108995785	GT	./.
chr1	108995786	.	C	.	.	LowGQX	END=108995795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:23
chr1	108995796	.	A	.	.	LowGQX;LowMQ	END=108995810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:15
chr1	108995811	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	108995812	.	A	.	.	LowGQX;LowMQ	END=108995816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:15
chr1	108995817	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	108995818	.	G	.	.	LowGQX;LowMQ	END=108995891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:13
chr1	108995892	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	108995893	.	G	.	.	LowGQX;LowMQ	END=108995936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:15
chr1	108995937	.	A	.	.	LowGQX;LowMQ	END=108996080	GT	./.
chr1	108996562	.	G	.	.	LowGQX	END=108996721	GT	./.
chr1	108996999	.	G	.	.	LowGQX	END=108997149	GT	./.
chr1	108997946	.	T	.	.	LowGQX	END=108998011	GT	./.
chr1	108998012	.	G	.	.	LowGQX;LowMQ	END=108998172	GT	./.
chr1	108998173	.	T	.	.	LowGQX	END=108998285	GT	./.
chr1	108999545	.	T	.	.	LowGQX;LowMQ	END=108999555	GT	./.
chr1	108999556	.	T	.	.	LowGQX	END=108999570	GT	./.
chr1	108999571	.	C	.	.	LowGQX;LowMQ	END=108999704	GT	./.
chr1	108999808	.	T	.	.	LowGQX	END=108999962	GT	./.
chr1	109000526	.	T	.	.	LowGQX;LowMQ	END=109000564	GT	./.
chr1	109000565	.	G	.	.	LowGQX	END=109000650	GT	./.
chr1	109000651	.	G	.	.	LowGQX;LowMQ	END=109000678	GT	./.
chr1	109000679	.	A	.	.	LowGQX	END=109000697	GT	./.
chr1	109001596	.	C	.	.	LowGQX	END=109001755	GT	./.
chr1	109002543	.	C	.	.	LowGQX;LowMQ	END=109002640	GT	./.
chr1	109002641	.	C	.	.	LowGQX	END=109002724	GT	./.
chr1	109003671	.	C	.	.	LowGQX	END=109003830	GT	./.
chr1	109004526	.	T	.	.	LowGQX	END=109004710	GT	./.
chr1	109007738	.	G	.	.	LowGQX	END=109007739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	109007740	.	T	.	.	LowGQX	END=109008107	GT	./.
chr1	109010037	.	G	.	.	LowGQX	END=109010279	GT	./.
chr1	109010280	.	G	.	.	LowGQX	END=109010287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109013190	.	T	.	.	LowGQX	END=109013289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109103050	.	G	.	.	LowGQX	END=109103189	GT	./.
chr1	109143186	.	A	.	.	LowGQX	END=109143190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109143191	.	G	.	.	LowGQX	.	GT	./.
chr1	109143192	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109143193	.	T	.	.	LowGQX	.	GT	./.
chr1	109143194	.	G	.	.	LowGQX	END=109143203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109143204	.	A	.	.	LowGQX	.	GT	./.
chr1	109143205	.	A	.	.	LowGQX	END=109143214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109143215	.	C	.	.	LowGQX	.	GT	./.
chr1	109143216	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109143217	.	G	.	.	LowGQX	.	GT	./.
chr1	109143218	.	G	.	.	LowGQX	END=109143224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109143225	.	A	.	.	LowGQX	.	GT	./.
chr1	109143226	.	A	.	.	LowGQX	END=109143231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109143232	.	C	.	.	LowGQX	.	GT	./.
chr1	109143233	.	A	.	.	LowGQX	END=109143234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109143235	.	T	.	.	LowGQX	.	GT	./.
chr1	109143236	.	T	.	.	LowGQX	END=109143243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109143244	.	A	.	.	LowGQX	.	GT	./.
chr1	109143245	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109143246	.	A	.	.	LowGQX	.	GT	./.
chr1	109143247	.	T	.	.	LowGQX	END=109143251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109143252	.	G	.	.	LowGQX	END=109143291	GT	./.
chr1	109143292	.	G	.	.	LowGQX	END=109143301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109143302	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	109143303	.	A	.	.	LowGQX	END=109143310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109148810	.	T	.	.	LowGQX	END=109148909	GT	./.
chr1	109154798	.	A	.	.	LowGQX	END=109154918	GT	./.
chr1	109158922	.	A	.	.	LowGQX	END=109159022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109159023	.	T	.	.	LowGQX	END=109159077	GT	./.
chr1	109167265	.	A	.	.	LowGQX	END=109167372	GT	./.
chr1	109170787	.	A	.	.	LowGQX	END=109170886	GT	./.
chr1	109171015	.	A	.	.	LowGQX	END=109171208	GT	./.
chr1	109171297	.	A	.	.	LowGQX	END=109171369	GT	./.
chr1	109171370	.	A	.	.	LowGQX	END=109171428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109172195	.	A	.	.	LowGQX	END=109172294	GT	./.
chr1	109172398	.	G	.	.	LowGQX	END=109172426	GT	./.
chr1	109172427	.	A	.	.	LowGQX	END=109172497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109173693	.	G	.	.	LowGQX	END=109173792	GT	./.
chr1	109177702	.	T	.	.	LowGQX	END=109177801	GT	./.
chr1	109187282	.	T	.	.	LowGQX	END=109187316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109187317	.	G	C	9.30	LowGQX	BaseQRankSum=-1.026;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.000;QD=2.32;ReadPosRankSum=-1.026;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:38.75:39,0,39:60:9:0.500
chr1	109187318	.	T	.	.	LowGQX	END=109187381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109191186	.	G	.	.	LowGQX	END=109191615	GT	./.
chr1	109191899	.	G	.	.	LowGQX	END=109192058	GT	./.
chr1	109192617	.	T	.	.	LowGQX	END=109192716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109192831	.	A	.	.	LowGQX	END=109192924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109192925	.	A	.	.	LowGQX	END=109193012	GT	./.
chr1	109193650	.	A	.	.	LowGQX	END=109193833	GT	./.
chr1	109197336	.	A	.	.	LowGQX	END=109197474	GT	./.
chr1	109198206	.	A	.	.	LowGQX	END=109198322	GT	./.
chr1	109200071	.	A	.	.	LowGQX	END=109200250	GT	./.
chr1	109202447	.	C	.	.	LowGQX	END=109202546	GT	./.
chr1	109235212	.	A	.	.	LowGQX	END=109235491	GT	./.
chr1	109238309	.	C	.	.	LowGQX	END=109238408	GT	./.
chr1	109238663	.	A	.	.	LowGQX	END=109238664	GT	./.
chr1	109238665	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238666	.	T	.	.	LowGQX	.	GT	./.
chr1	109238667	.	T	.	.	LowGQX	END=109238682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238683	.	G	.	.	LowGQX	.	GT	./.
chr1	109238684	.	G	.	.	LowGQX	END=109238697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238698	.	A	.	.	LowGQX	.	GT	./.
chr1	109238699	.	C	.	.	LowGQX	END=109238708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238709	.	C	.	.	LowGQX	.	GT	./.
chr1	109238710	.	C	.	.	LowGQX	END=109238740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238741	.	C	.	.	LowGQX	.	GT	./.
chr1	109238742	.	T	.	.	LowGQX	END=109238750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238751	.	A	.	.	LowGQX	.	GT	./.
chr1	109238752	.	G	.	.	LowGQX	END=109238758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238759	.	G	.	.	LowGQX	.	GT	./.
chr1	109238760	.	T	.	.	LowGQX	END=109238768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238769	.	A	.	.	LowGQX	.	GT	./.
chr1	109238770	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238771	.	A	.	.	LowGQX	.	GT	./.
chr1	109238772	.	C	.	.	LowGQX	END=109238777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238778	.	C	.	.	LowGQX	.	GT	./.
chr1	109238779	.	T	.	.	LowGQX	END=109238781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238782	.	C	.	.	LowGQX	END=109238783	GT	./.
chr1	109238784	.	A	.	.	LowGQX	END=109238790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238791	.	A	.	.	LowGQX	.	GT	./.
chr1	109238792	.	G	.	.	LowGQX	END=109238794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238795	.	C	.	.	LowGQX	.	GT	./.
chr1	109238796	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238797	.	C	.	.	LowGQX	.	GT	./.
chr1	109238798	.	T	.	.	LowGQX	END=109238807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238808	.	G	.	.	LowGQX	.	GT	./.
chr1	109238809	.	T	.	.	LowGQX	END=109238814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238815	.	A	.	.	LowGQX	END=109238818	GT	./.
chr1	109238880	.	T	.	.	LowGQX	END=109238933	GT	./.
chr1	109238934	.	T	.	.	LowGQX	END=109238938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238939	.	T	.	.	LowGQX	END=109238940	GT	./.
chr1	109238941	.	C	.	.	LowGQX	END=109238947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238948	.	G	.	.	LowGQX	.	GT	./.
chr1	109238949	.	A	.	.	LowGQX	END=109238953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238954	.	G	.	.	LowGQX	.	GT	./.
chr1	109238955	.	A	.	.	LowGQX	END=109238958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238959	.	G	.	.	LowGQX	.	GT	./.
chr1	109238960	.	G	.	.	LowGQX	END=109238971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109238972	.	G	.	.	LowGQX	.	GT	./.
chr1	109238973	.	G	.	.	LowGQX	END=109238979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109239319	.	T	.	.	LowGQX	END=109239418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109241224	.	A	.	.	LowGQX	END=109241451	GT	./.
chr1	109241782	.	A	.	.	LowGQX	END=109242181	GT	./.
chr1	109242182	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242183	.	T	.	.	LowGQX	.	GT	./.
chr1	109242184	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242185	.	G	.	.	LowGQX	.	GT	./.
chr1	109242186	.	G	.	.	LowGQX	END=109242222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242223	.	G	.	.	LowGQX	.	GT	./.
chr1	109242224	.	A	.	.	LowGQX	END=109242232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242233	.	G	.	.	LowGQX	.	GT	./.
chr1	109242234	.	G	.	.	LowGQX	END=109242235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242236	.	A	.	.	LowGQX	.	GT	./.
chr1	109242237	.	C	.	.	LowGQX	END=109242241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242242	.	A	.	.	LowGQX	.	GT	./.
chr1	109242243	.	T	.	.	LowGQX	END=109242245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242246	.	C	.	.	LowGQX	.	GT	./.
chr1	109242247	.	A	.	.	LowGQX	END=109242251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242252	.	A	.	.	LowGQX	END=109242253	GT	./.
chr1	109242254	.	A	.	.	LowGQX	END=109242256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242257	.	C	.	.	LowGQX	.	GT	./.
chr1	109242258	.	C	.	.	LowGQX	END=109242262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242263	.	A	.	.	LowGQX	.	GT	./.
chr1	109242264	.	A	.	.	LowGQX	END=109242268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242269	.	A	.	.	LowGQX	.	GT	./.
chr1	109242270	.	A	.	.	LowGQX	END=109242272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242273	.	A	.	.	LowGQX	.	GT	./.
chr1	109242274	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242275	.	A	.	.	LowGQX	END=109242276	GT	./.
chr1	109242277	.	A	.	.	LowGQX	END=109242285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242286	.	A	.	.	LowGQX	.	GT	./.
chr1	109242287	.	G	.	.	LowGQX	END=109242295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242296	.	A	.	.	LowGQX	.	GT	./.
chr1	109242297	.	A	.	.	LowGQX	END=109242299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242300	.	G	.	.	LowGQX	.	GT	./.
chr1	109242301	.	A	.	.	LowGQX	END=109242306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242307	.	A	.	.	LowGQX	.	GT	./.
chr1	109242308	.	G	.	.	LowGQX	END=109242315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242316	.	A	.	.	LowGQX	END=109242317	GT	./.
chr1	109242318	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242319	.	C	.	.	LowGQX	.	GT	./.
chr1	109242320	.	G	.	.	LowGQX	END=109242322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242323	.	G	.	.	LowGQX	.	GT	./.
chr1	109242324	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242325	.	A	.	.	LowGQX	.	GT	./.
chr1	109242326	.	G	.	.	LowGQX	END=109242328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242329	.	A	.	.	LowGQX	.	GT	./.
chr1	109242330	.	T	.	.	LowGQX	END=109242331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242332	.	C	.	.	LowGQX	END=109242586	GT	./.
chr1	109242587	.	G	.	.	LowGQX	END=109242597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109242598	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	109242599	.	A	.	.	LowGQX	END=109242601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109242602	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	109242603	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109242604	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	109242605	.	A	.	.	LowGQX	END=109242611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	109242612	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	109242613	.	C	.	5.68	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.01:60:0
chr1	109242614	.	A	.	.	LowGQX	END=109242620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	109242621	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	109242622	.	A	.	.	LowGQX	END=109242624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	109242625	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	109242626	.	A	.	.	LowGQX	END=109242628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	109242629	.	A	.	.	LowGQX	.	GT	./.
chr1	109242630	.	T	.	.	LowGQX	END=109242635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	109242636	.	T	.	.	LowGQX	END=109242638	GT	./.
chr1	109242639	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242640	.	T	.	.	LowGQX	.	GT	./.
chr1	109242641	.	G	.	.	LowGQX	END=109242643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109242644	.	A	.	.	LowGQX	.	GT	./.
chr1	109255537	.	G	.	.	LowGQX	END=109255560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109255561	.	T	.	.	LowGQX	.	GT	./.
chr1	109255562	.	G	.	.	LowGQX	END=109255612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109255613	.	A	.	.	LowGQX	.	GT	./.
chr1	109255614	.	A	.	.	LowGQX	END=109255632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109255633	.	C	.	.	LowGQX	END=109255636	GT	./.
chr1	109256059	.	T	.	.	LowGQX	END=109256158	GT	./.
chr1	109260398	.	G	.	.	LowGQX	END=109260653	GT	./.
chr1	109261410	.	G	.	.	LowGQX	END=109261508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109261509	.	A	.	.	LowGQX	END=109261671	GT	./.
chr1	109264956	.	G	.	.	LowGQX	END=109264984	GT	./.
chr1	109264985	.	C	.	.	LowGQX	END=109264986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109264987	.	C	.	.	LowGQX	.	GT	./.
chr1	109264988	.	T	.	.	LowGQX	END=109264990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109264991	.	C	.	.	LowGQX	.	GT	./.
chr1	109264992	.	G	.	.	LowGQX	END=109264999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265000	.	A	.	.	LowGQX	.	GT	./.
chr1	109265001	.	G	.	.	LowGQX	END=109265007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265008	.	A	.	.	LowGQX	.	GT	./.
chr1	109265009	.	G	.	.	LowGQX	END=109265010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265011	.	C	.	.	LowGQX	END=109265013	GT	./.
chr1	109265014	.	C	.	.	LowGQX	END=109265025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265026	.	C	.	.	LowGQX	END=109265027	GT	./.
chr1	109265028	.	C	.	.	LowGQX	END=109265034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265035	.	A	.	.	LowGQX	.	GT	./.
chr1	109265036	.	A	.	.	LowGQX	END=109265046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265047	.	A	.	.	LowGQX	.	GT	./.
chr1	109265048	.	T	.	.	LowGQX	END=109265049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265050	.	A	.	.	LowGQX	.	GT	./.
chr1	109265051	.	T	.	.	LowGQX	END=109265061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265062	.	C	.	.	LowGQX	.	GT	./.
chr1	109265063	.	T	.	.	LowGQX	END=109265065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265066	.	G	.	.	LowGQX	.	GT	./.
chr1	109265067	.	A	.	.	LowGQX	END=109265068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265069	.	C	.	.	LowGQX	.	GT	./.
chr1	109265070	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265071	.	A	.	.	LowGQX	.	GT	./.
chr1	109265072	.	C	.	.	LowGQX	END=109265090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265091	.	A	.	.	LowGQX	.	GT	./.
chr1	109265092	.	G	.	.	LowGQX	END=109265104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265105	.	T	.	.	LowGQX	.	GT	./.
chr1	109265106	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265107	.	C	.	.	LowGQX	.	GT	./.
chr1	109265108	.	C	.	.	LowGQX	END=109265110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265111	.	C	.	.	LowGQX	.	GT	./.
chr1	109265112	.	A	.	.	LowGQX	END=109265113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265114	.	C	.	.	LowGQX	.	GT	./.
chr1	109265115	.	A	.	.	LowGQX	END=109265119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265120	.	T	.	.	LowGQX	.	GT	./.
chr1	109265121	.	T	.	.	LowGQX	END=109265123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265124	.	C	.	.	LowGQX	.	GT	./.
chr1	109265125	.	T	.	.	LowGQX	END=109265128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265129	.	G	.	.	LowGQX	END=109265130	GT	./.
chr1	109265131	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265132	.	T	.	.	LowGQX	.	GT	./.
chr1	109265133	.	G	.	.	LowGQX	END=109265134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265135	.	A	.	.	LowGQX	END=109265147	GT	./.
chr1	109265148	.	A	.	.	LowGQX	END=109265179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265180	.	T	.	.	LowGQX	.	GT	./.
chr1	109265181	.	A	.	.	LowGQX	END=109265191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109265192	.	T	.	.	LowGQX	END=109265193	GT	./.
chr1	109265194	.	C	.	.	LowGQX	END=109265216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109268370	.	A	.	.	LowGQX	END=109268628	GT	./.
chr1	109270428	.	A	.	.	LowGQX	END=109270443	GT	./.
chr1	109270444	.	A	.	.	LowGQX	END=109270634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109270635	.	C	.	.	LowGQX	END=109270689	GT	./.
chr1	109271252	.	A	.	.	LowGQX	END=109271508	GT	./.
chr1	109271509	.	G	.	.	LowGQX	END=109271510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109273294	.	A	.	.	LowGQX	END=109273552	GT	./.
chr1	109275892	.	A	.	.	LowGQX	END=109275932	GT	./.
chr1	109275933	.	G	.	.	LowGQX	END=109276091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109276092	.	T	.	.	LowGQX	END=109276156	GT	./.
chr1	109280025	.	C	.	.	LowGQX	END=109280181	GT	./.
chr1	109284303	.	A	.	.	LowGQX	END=109284460	GT	./.
chr1	109289275	.	G	.	.	LowGQX	END=109289316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109289317	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	109289318	.	G	.	.	LowGQX	END=109289425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	109289426	.	G	T	3.07	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.02;ReadPosRankSum=-0.736;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.11:30,0,39:60:3:0.333
chr1	109289427	.	G	.	.	LowGQX	END=109289429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109289430	.	T	.	.	LowGQX	END=109289487	GT	./.
chr1	109294854	.	A	.	.	LowGQX	END=109294953	GT	./.
chr1	109295676	.	T	.	.	LowGQX	END=109295775	GT	./.
chr1	109299301	.	T	.	.	LowGQX	END=109299400	GT	./.
chr1	109301070	.	A	.	.	LowGQX	END=109301221	GT	./.
chr1	109302555	.	A	.	.	LowGQX	END=109302663	GT	./.
chr1	109302664	.	G	.	.	LowGQX	END=109302676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109302677	.	A	.	.	LowGQX	.	GT	./.
chr1	109302678	.	A	.	.	LowGQX	END=109302709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109315285	.	A	.	.	LowGQX	END=109315443	GT	./.
chr1	109318953	.	A	.	.	LowGQX	END=109319052	GT	./.
chr1	109321906	.	A	.	.	LowGQX	END=109322034	GT	./.
chr1	109325042	.	A	.	.	LowGQX	END=109325141	GT	./.
chr1	109325250	.	A	.	.	LowGQX	END=109325349	GT	./.
chr1	109336187	.	T	.	.	LowGQX	END=109336286	GT	./.
chr1	109337440	.	G	.	.	LowGQX	END=109337539	GT	./.
chr1	109338854	.	A	.	.	LowGQX	END=109338996	GT	./.
chr1	109339240	.	A	.	.	LowGQX	END=109339350	GT	./.
chr1	109340764	.	T	.	.	LowGQX	END=109340863	GT	./.
chr1	109342770	.	T	.	.	LowGQX	END=109342934	GT	./.
chr1	109349991	.	G	.	.	LowGQX	END=109350173	GT	./.
chr1	109351343	.	A	.	.	LowGQX	END=109351361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109351362	.	A	.	.	LowGQX	.	GT	./.
chr1	109351363	.	T	.	.	LowGQX	END=109351453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109351454	.	G	.	.	LowGQX	.	GT	./.
chr1	109351455	.	C	.	.	LowGQX	END=109351500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109351501	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	109351502	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109358791	.	A	.	.	LowGQX	END=109358926	GT	./.
chr1	109359668	.	A	.	.	LowGQX	END=109359801	GT	./.
chr1	109363158	.	A	.	.	LowGQX	END=109363257	GT	./.
chr1	109365774	.	G	.	.	LowGQX	END=109365893	GT	./.
chr1	109365947	.	A	.	.	LowGQX	END=109366101	GT	./.
chr1	109366186	.	A	.	.	LowGQX	END=109366312	GT	./.
chr1	109369825	.	A	.	.	LowGQX	END=109369872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109369873	.	A	.	.	LowGQX	.	GT	./.
chr1	109369874	.	A	.	.	LowGQX	END=109369902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109369903	.	C	.	.	LowGQX	END=109369911	GT	./.
chr1	109369912	.	C	.	.	LowGQX	END=109369926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109373177	.	T	.	.	LowGQX	END=109373327	GT	./.
chr1	109377060	.	G	.	.	LowGQX	END=109377159	GT	./.
chr1	109377518	.	T	.	.	LowGQX	END=109377588	GT	./.
chr1	109377589	.	C	.	.	LowGQX	END=109377654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109377655	.	G	.	.	LowGQX	.	GT	./.
chr1	109377656	.	T	.	.	LowGQX	END=109377728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109380170	.	A	.	.	LowGQX	END=109380250	GT	./.
chr1	109380251	.	G	.	.	LowGQX	END=109380276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109380277	.	T	.	.	LowGQX	.	GT	./.
chr1	109380278	.	T	.	.	LowGQX	END=109380291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109380292	.	C	.	.	LowGQX	.	GT	./.
chr1	109380293	.	A	.	.	LowGQX	END=109380330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109385754	.	A	.	.	LowGQX	END=109385891	GT	./.
chr1	109391356	.	C	.	.	LowGQX	END=109391393	GT	./.
chr1	109391394	.	G	.	.	LowGQX	END=109391455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109391532	.	A	.	.	LowGQX	END=109391546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109391547	.	T	.	.	LowGQX	END=109391684	GT	./.
chr1	109392129	.	T	.	.	LowGQX	END=109392228	GT	./.
chr1	109394292	.	A	.	.	LowGQX	END=109394383	GT	./.
chr1	109394384	.	A	.	.	LowGQX	END=109394398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109394399	.	G	.	.	LowGQX	END=109394400	GT	./.
chr1	109394401	.	G	.	.	LowGQX	END=109394475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109394476	.	G	.	.	LowGQX	.	GT	./.
chr1	109394477	.	A	.	.	LowGQX	END=109394482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109394483	.	C	.	.	LowGQX	.	GT	./.
chr1	109394484	.	A	.	.	LowGQX	END=109394701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109394702	.	A	.	.	LowGQX	END=109395159	GT	./.
chr1	109395160	.	C	.	.	LowGQX	END=109395218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109395219	.	A	.	.	LowGQX	END=109395288	GT	./.
chr1	109428133	.	T	.	.	PASS	END=109428206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	109428207	.	C	.	.	PASS	END=109428222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	109428223	.	G	.	.	PASS	END=109428237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	109428238	.	C	.	.	PASS	END=109428248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	109428249	.	G	A	1628.92	PASS	BaseQRankSum=1.304;DP=120;Dels=0.00;FS=0.934;HRun=3;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=0.995;QD=13.57;ReadPosRankSum=0.255;SB=-296.66	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:60,60:120:99:1659,0,1705:60:99:0.500
chr1	109428250	.	T	.	.	PASS	END=109428251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	109439435	.	T	.	.	PASS	END=109439438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	109439439	.	G	.	.	PASS	END=109439447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	109439448	.	A	.	.	PASS	END=109439461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	109439462	.	T	.	.	PASS	END=109439471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	109439472	.	G	.	.	PASS	END=109439493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr1	109439494	.	C	.	.	PASS	END=109439496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	109439497	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:61:60
chr1	109439498	.	T	.	.	PASS	END=109439527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	109439528	.	T	.	.	PASS	END=109439557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	109439558	.	C	.	.	PASS	END=109439646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	109439647	.	T	.	.	PASS	END=109439679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	109439680	.	A	.	.	PASS	END=109439694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	109439695	.	T	.	.	PASS	END=109439699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	109439700	.	C	.	.	PASS	END=109439703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	109439704	.	C	.	.	PASS	END=109439706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	109439707	.	G	.	.	PASS	END=109439737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	109439738	.	C	.	.	PASS	END=109439751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	109439752	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:75:60
chr1	109439753	.	A	.	.	PASS	END=109439758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	109440063	.	T	.	.	PASS	END=109440075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	109440076	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:63:60
chr1	109440077	.	A	.	.	PASS	END=109440105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	109440106	.	T	.	.	PASS	END=109440118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	109440119	.	T	.	.	PASS	END=109440256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:89:60
chr1	109440257	.	C	.	.	PASS	END=109440269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	109440270	.	G	.	.	PASS	END=109440300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	109440530	.	A	.	.	PASS	END=109440583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	109440584	.	G	.	.	PASS	END=109440617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	109440618	.	T	.	.	PASS	END=109440671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	109440672	.	A	.	.	PASS	END=109440723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	109440724	.	G	.	.	PASS	END=109440739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	109440740	.	A	G	566.73	PASS	BaseQRankSum=-0.347;DP=58;Dels=0.00;FS=3.338;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=-0.121;QD=9.77;ReadPosRankSum=-0.784;SB=-155.36	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,24:58:99:597,0,973:60:99:0.421
chr1	109440741	.	T	.	.	PASS	END=109440758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	109440759	.	C	.	.	PASS	END=109440767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	109440768	.	C	.	.	PASS	END=109440771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	109440772	.	G	.	.	PASS	END=109440774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	109441213	.	A	.	.	PASS	END=109441256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:78:60
chr1	109441257	.	C	.	.	PASS	END=109441303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	109441304	.	G	.	.	PASS	END=109441430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	109441431	.	G	.	.	PASS	END=109441438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	109441450	.	T	.	.	PASS	END=109441510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	109441511	.	T	.	.	PASS	END=109441557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	109441558	.	A	.	.	PASS	END=109441615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	109441616	.	A	.	.	PASS	END=109441661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	109441662	.	C	.	.	PASS	END=109441667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	109444361	.	A	.	.	PASS	END=109444369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	109444370	.	A	T	1747.16	PASS	BaseQRankSum=1.430;DP=170;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=9.6792;MQ=60;MQ0=0;MQRankSum=-0.866;QD=10.28;ReadPosRankSum=0.484;SB=-766.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:98,72:170:99:1777,0,2568:60:99:0.424
chr1	109444371	.	C	.	.	PASS	END=109444469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	109444470	.	T	.	.	PASS	END=109444546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	109444547	.	T	.	.	PASS	END=109444562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	109444563	.	G	.	.	PASS	END=109444618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	109445697	.	C	.	.	PASS	END=109445705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	109445706	.	T	G	1173.24	PASS	BaseQRankSum=-0.300;DP=89;Dels=0.00;FS=5.949;HRun=0;HaplotypeScore=7.8278;MQ=60;MQ0=0;MQRankSum=1.145;QD=13.18;ReadPosRankSum=1.654;SB=-315.68	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:43,46:89:99:1203,0,1249:60:99:0.517
chr1	109445707	.	C	.	.	PASS	END=109445780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	109445781	.	A	.	.	PASS	END=109445867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	109445868	.	A	.	.	PASS	END=109445907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	109446696	.	C	.	.	PASS	END=109446744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	109446745	.	A	.	.	PASS	END=109446823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	109446824	.	C	.	.	PASS	END=109446927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	109456909	.	G	.	.	PASS	END=109456959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	109456960	.	G	.	.	PASS	END=109456980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	109456981	.	G	.	.	PASS	END=109456985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	109456986	.	C	.	.	PASS	END=109457040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	109457041	.	G	.	.	PASS	END=109457081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	109461184	.	C	.	.	PASS	END=109461239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	109461240	.	G	.	.	PASS	END=109461316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	109461317	.	G	.	.	PASS	END=109461340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	109461341	.	C	T	2709.93	PASS	BaseQRankSum=6.116;DP=198;Dels=0.00;FS=6.128;HRun=0;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=-1.634;QD=13.69;ReadPosRankSum=0.364;SB=-1496.73	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:102,96:198:99:2740,0,2476:60:99:0.485
chr1	109461342	.	G	.	.	PASS	END=109461448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	109461449	.	G	.	.	PASS	END=109461462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	109464988	.	A	.	.	PASS	END=109465011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	109465012	.	A	.	.	PASS	END=109465054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	109465055	.	C	.	.	PASS	END=109465165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	109465165	.	ACTT	A	4646.44	PASS	BaseQRankSum=-0.949;DP=212;FS=6.894;HRun=0;HaplotypeScore=147.2033;MQ=60;MQ0=0;MQRankSum=0.135;QD=21.92;ReadPosRankSum=2.020;SB=-2082.99	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:118,90:212:99:4646,0,6044:60:99:0.433
chr1	109465166	.	C	.	330.97	PASS	DP=210;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:120:120:99:60:99
chr1	109465167	.	T	.	327.96	PASS	DP=210;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:120:120:99:60:99
chr1	109465168	.	T	.	333.94	PASS	DP=210;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:120:120:99:60:99
chr1	109465169	.	C	.	.	PASS	END=109465249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	109466571	.	T	.	.	PASS	END=109466596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	109466597	.	T	C	1160.01	PASS	BaseQRankSum=-3.757;DP=111;Dels=0.00;FS=2.589;HRun=1;HaplotypeScore=12.4052;MQ=60;MQ0=0;MQRankSum=-1.358;QD=10.45;ReadPosRankSum=1.010;SB=-228.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:48,61:111:99:1190,0,1452:60:99:0.560
chr1	109466598	.	T	.	.	PASS	END=109466621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	109466622	.	C	.	.	PASS	END=109466687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	109466688	.	G	.	.	PASS	END=109466738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	109466739	.	G	.	.	PASS	END=109466781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	109466782	.	T	.	.	PASS	END=109466830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	109466831	.	T	.	.	PASS	END=109466857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	109466858	.	G	A	1916.74	PASS	BaseQRankSum=1.239;DP=119;Dels=0.00;FS=2.087;HRun=0;HaplotypeScore=8.6805;MQ=60;MQ0=0;MQRankSum=-1.773;QD=16.11;ReadPosRankSum=1.042;SB=-323.43	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:51,66:119:99:1947,0,1272:60:99:0.564
chr1	109466859	.	T	.	.	PASS	END=109466876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	109466877	.	T	.	.	PASS	END=109466888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	109466889	.	C	.	.	PASS	END=109466905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	109466906	.	T	.	.	PASS	END=109466919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	109472272	.	G	.	.	LowGQX	END=109472274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	109472275	.	G	.	.	PASS	END=109472276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	109472277	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	109472278	.	T	.	.	PASS	END=109472281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	109472282	.	T	.	.	PASS	END=109472289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	109472290	.	G	.	.	PASS	END=109472295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	109472296	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:36:60
chr1	109472297	.	T	.	.	PASS	END=109472315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	109472316	.	C	.	.	PASS	END=109472339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	109472340	.	T	.	.	PASS	END=109472372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:60
chr1	109472373	.	G	.	.	PASS	END=109472413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	109472414	.	T	.	.	PASS	END=109472472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	109472473	.	A	.	.	PASS	END=109472563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	109472564	.	T	.	.	PASS	END=109472570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	109472571	.	G	.	.	PASS	END=109472613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	109473977	.	A	.	.	LowGQX	END=109474107	GT	./.
chr1	109477290	.	C	.	.	LowGQX	END=109477566	GT	./.
chr1	109479697	.	A	.	.	LowGQX	END=109480042	GT	./.
chr1	109482256	.	A	.	.	LowGQX	END=109482388	GT	./.
chr1	109482389	.	A	.	.	LowGQX	END=109482406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109482665	.	A	.	.	LowGQX	END=109482766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109484024	.	T	.	.	LowGQX	END=109484123	GT	./.
chr1	109486095	.	A	.	.	LowGQX	END=109486191	GT	./.
chr1	109486192	.	G	.	.	LowGQX	END=109486195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109486196	.	A	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	109486197	.	G	.	.	LowGQX	END=109486214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109486215	.	A	.	.	LowGQX	.	GT	./.
chr1	109486216	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109486217	.	G	.	.	LowGQX	.	GT	./.
chr1	109486218	.	C	.	.	LowGQX	END=109486240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109486241	.	A	.	.	LowGQX	.	GT	./.
chr1	109486242	.	A	.	.	LowGQX	END=109486261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109486262	.	C	.	.	LowGQX	.	GT	./.
chr1	109486263	.	A	.	.	LowGQX	END=109486284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109486456	.	A	.	.	LowGQX	END=109486478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109486479	.	C	.	.	LowGQX	END=109486681	GT	./.
chr1	109490231	.	A	.	.	LowGQX	END=109490342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109492440	.	A	.	.	LowGQX	END=109492599	GT	./.
chr1	109492929	.	A	.	.	LowGQX	END=109493061	GT	./.
chr1	109505982	.	C	.	.	LowGQX	END=109506028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109506029	.	C	.	.	LowGQX	END=109506096	GT	./.
chr1	109514050	.	C	.	.	LowGQX	END=109514091	GT	./.
chr1	109514092	.	G	.	.	LowGQX	END=109514160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109514161	.	A	.	.	LowGQX	.	GT	./.
chr1	109514162	.	C	.	.	LowGQX	END=109514196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517156	.	A	.	.	LowGQX	.	GT	./.
chr1	109517157	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517158	.	C	.	.	LowGQX	.	GT	./.
chr1	109517159	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517160	.	T	.	.	LowGQX	.	GT	./.
chr1	109517161	.	G	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	109517162	.	T	.	.	LowGQX	END=109517163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517164	.	G	.	.	LowGQX	.	GT	./.
chr1	109517165	.	G	.	.	LowGQX	END=109517166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517167	.	C	.	.	LowGQX	.	GT	./.
chr1	109517168	.	T	.	.	LowGQX	END=109517170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517171	.	C	.	.	LowGQX	.	GT	./.
chr1	109517172	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517173	.	C	.	.	LowGQX	END=109517174	GT	./.
chr1	109517175	.	T	.	.	LowGQX	END=109517178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517179	.	T	.	.	LowGQX	.	GT	./.
chr1	109517180	.	T	.	.	LowGQX	END=109517187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517188	.	C	.	.	LowGQX	.	GT	./.
chr1	109517189	.	A	.	.	LowGQX	END=109517191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517192	.	A	.	.	LowGQX	END=109517193	GT	./.
chr1	109517194	.	A	.	.	LowGQX	END=109517195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517196	.	C	.	.	LowGQX	END=109517197	GT	./.
chr1	109517198	.	T	.	.	LowGQX	END=109517202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517203	.	G	.	.	LowGQX	END=109517204	GT	./.
chr1	109517205	.	A	.	.	LowGQX	END=109517206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517207	.	G	.	.	LowGQX	.	GT	./.
chr1	109517208	.	T	.	.	LowGQX	END=109517211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517212	.	G	.	.	LowGQX	END=109517213	GT	./.
chr1	109517214	.	G	.	.	LowGQX	END=109517216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517217	.	C	.	.	LowGQX	.	GT	./.
chr1	109517218	.	C	.	.	LowGQX	END=109517220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517221	.	G	.	.	LowGQX	.	GT	./.
chr1	109517222	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	109517223	.	G	.	.	LowGQX	END=109517226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517227	.	A	.	.	LowGQX	.	GT	./.
chr1	109517228	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517229	.	C	.	.	LowGQX	END=109517230	GT	./.
chr1	109517231	.	A	.	.	LowGQX	END=109517232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517233	.	C	.	.	LowGQX	END=109517234	GT	./.
chr1	109517235	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109517236	.	A	.	.	LowGQX	END=109517378	GT	./.
chr1	109524350	.	C	.	.	LowGQX	END=109524488	GT	./.
chr1	109525229	.	A	.	.	LowGQX	END=109525403	GT	./.
chr1	109525902	.	A	.	.	LowGQX	END=109526075	GT	./.
chr1	109529143	.	A	.	.	LowGQX	END=109529304	GT	./.
chr1	109533864	.	C	.	.	LowGQX	END=109533963	GT	./.
chr1	109538200	.	A	.	.	LowGQX	END=109538278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109538279	.	A	.	.	LowGQX	.	GT	./.
chr1	109538280	.	A	.	.	LowGQX	END=109538292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109538293	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	109538294	.	A	.	.	LowGQX	END=109538339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109538340	.	G	.	.	LowGQX	END=109538461	GT	./.
chr1	109544844	.	A	.	.	LowGQX	END=109544884	GT	./.
chr1	109544885	.	G	.	.	LowGQX	END=109544886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109544887	.	A	.	.	LowGQX	.	GT	./.
chr1	109544888	.	C	.	.	LowGQX	END=109545026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109547212	.	A	.	.	LowGQX	END=109547342	GT	./.
chr1	109553536	.	A	.	.	LowGQX	END=109553647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109553648	.	T	.	.	LowGQX	END=109554342	GT	./.
chr1	109556441	.	C	.	.	LowGQX	END=109556465	GT	./.
chr1	109556466	.	C	.	.	LowGQX	END=109556472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109556473	.	T	.	.	LowGQX	.	GT	./.
chr1	109556474	.	C	.	.	LowGQX	END=109556480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109556481	.	T	.	.	LowGQX	.	GT	./.
chr1	109556482	.	G	.	.	LowGQX	END=109556504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109556505	.	T	.	.	LowGQX	.	GT	./.
chr1	109556506	.	A	.	.	LowGQX	END=109556523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109556524	.	T	.	.	LowGQX	.	GT	./.
chr1	109556525	.	G	.	.	LowGQX	END=109556536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109556537	.	T	.	.	LowGQX	.	GT	./.
chr1	109556538	.	A	.	.	LowGQX	END=109556539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109556540	.	A	.	.	LowGQX	.	GT	./.
chr1	109556541	.	A	.	.	LowGQX	END=109556549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109560078	.	T	.	.	LowGQX	END=109560231	GT	./.
chr1	109565975	.	A	.	.	LowGQX	END=109566136	GT	./.
chr1	109607143	.	T	.	.	LowGQX	END=109607317	GT	./.
chr1	109608705	.	T	.	.	LowGQX	END=109608856	GT	./.
chr1	109617599	.	T	.	.	LowGQX	END=109617698	GT	./.
chr1	109618507	.	A	.	.	LowGQX	END=109618606	GT	./.
chr1	109633390	.	C	.	.	LowGQX	END=109633466	GT	./.
chr1	109633467	.	C	.	.	LowGQX	END=109633476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109633477	.	G	.	.	LowGQX	END=109633478	GT	./.
chr1	109633479	.	T	.	.	LowGQX	END=109633495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109633496	.	T	.	.	LowGQX	.	GT	./.
chr1	109633497	.	G	.	.	LowGQX	END=109633503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109633504	.	G	.	.	LowGQX	.	GT	./.
chr1	109633505	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109633506	.	T	.	.	LowGQX	.	GT	./.
chr1	109633507	.	G	.	.	LowGQX	END=109633519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109633520	.	C	.	.	LowGQX	.	GT	./.
chr1	109633521	.	T	.	.	LowGQX	END=109633530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109633531	.	G	.	.	LowGQX	.	GT	./.
chr1	109633532	.	T	.	.	LowGQX	END=109633533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109633534	.	G	.	.	LowGQX	.	GT	./.
chr1	109633535	.	G	.	.	LowGQX	END=109633541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109633542	.	G	.	.	LowGQX	.	GT	./.
chr1	109633543	.	G	.	.	LowGQX	END=109633549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109635510	.	A	.	.	LowGQX	END=109635545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109635546	.	G	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr1	109635547	.	C	.	.	LowGQX	END=109635637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	109635638	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	109635639	.	C	.	.	LowGQX	END=109635645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	109637031	.	C	.	.	LowGQX	END=109637130	GT	./.
chr1	109642815	.	G	.	.	LowGQX	END=109643236	GT	./.
chr1	109648636	.	G	.	.	LowGQX	END=109648735	GT	./.
chr1	109649155	.	A	.	.	LowGQX	END=109649283	GT	./.
chr1	109649627	.	A	.	.	LowGQX	END=109649628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649629	.	C	.	.	LowGQX	.	GT	./.
chr1	109649630	.	T	.	.	LowGQX	END=109649644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649645	.	T	.	.	LowGQX	END=109649646	GT	./.
chr1	109649647	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649648	.	T	.	.	LowGQX	.	GT	./.
chr1	109649649	.	T	.	.	LowGQX	END=109649655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649656	.	T	.	.	LowGQX	.	GT	./.
chr1	109649657	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649658	.	T	.	.	LowGQX	.	GT	./.
chr1	109649659	.	A	.	.	LowGQX	END=109649667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649668	.	T	.	.	LowGQX	.	GT	./.
chr1	109649669	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649670	.	A	.	.	LowGQX	END=109649671	GT	./.
chr1	109649672	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649673	.	T	.	.	LowGQX	.	GT	./.
chr1	109649674	.	T	.	.	LowGQX	END=109649676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649677	.	T	.	.	LowGQX	.	GT	./.
chr1	109649678	.	T	.	.	LowGQX	END=109649691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649692	.	G	.	.	LowGQX	.	GT	./.
chr1	109649693	.	T	.	.	LowGQX	END=109649697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649698	.	T	.	.	LowGQX	.	GT	./.
chr1	109649699	.	G	.	.	LowGQX	END=109649710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649711	.	C	.	.	LowGQX	.	GT	./.
chr1	109649712	.	T	.	.	LowGQX	END=109649714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649715	.	T	.	.	LowGQX	.	GT	./.
chr1	109649716	.	A	.	.	LowGQX	END=109649719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649720	.	G	.	.	LowGQX	.	GT	./.
chr1	109649721	.	G	.	.	LowGQX	END=109649724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649725	.	T	.	.	LowGQX	.	GT	./.
chr1	109649726	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649727	.	C	.	.	LowGQX	.	GT	./.
chr1	109649728	.	A	.	.	LowGQX	END=109649730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649731	.	T	.	.	LowGQX	.	GT	./.
chr1	109649732	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649733	.	A	.	.	LowGQX	.	GT	./.
chr1	109649734	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649735	.	C	.	.	LowGQX	.	GT	./.
chr1	109649736	.	C	.	.	LowGQX	END=109649741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649742	.	T	.	.	LowGQX	.	GT	./.
chr1	109649743	.	A	.	.	LowGQX	END=109649744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109649745	.	C	.	.	LowGQX	END=109649746	GT	./.
chr1	109650541	.	A	.	.	LowGQX	END=109650661	GT	./.
chr1	109655211	.	A	.	.	LowGQX	END=109655310	GT	./.
chr1	109656228	.	G	.	.	LowGQX	END=109656327	GT	./.
chr1	109656804	.	C	.	.	LowGQX	END=109656869	GT	./.
chr1	109656870	.	T	.	.	LowGQX	END=109656883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109656884	.	C	A	7.08	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=3.54;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:36,3,0:60:3:1.000
chr1	109656885	.	G	.	.	LowGQX	END=109656900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109656901	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	109656902	.	G	.	.	LowGQX	END=109656915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109656916	.	G	.	.	LowGQX	.	GT	./.
chr1	109656917	.	G	.	.	LowGQX	END=109656945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109656946	.	T	C	7.08	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=3.54;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:36,3,0:60:3:1.000
chr1	109656947	.	G	.	.	LowGQX	END=109656960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109704514	.	A	.	.	LowGQX	END=109704638	GT	./.
chr1	109707119	.	A	.	.	LowGQX	END=109707296	GT	./.
chr1	109707297	.	A	.	.	LowGQX	END=109707315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109714486	.	A	.	.	LowGQX	END=109714637	GT	./.
chr1	109715101	.	T	.	.	LowGQX	END=109715200	GT	./.
chr1	109716094	.	A	.	.	LowGQX	END=109716203	GT	./.
chr1	109716308	.	A	.	.	LowGQX	END=109716461	GT	./.
chr1	109727662	.	T	.	.	LowGQX	END=109727761	GT	./.
chr1	109730797	.	A	.	.	LowGQX	END=109730908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109730909	.	A	.	.	LowGQX	END=109730932	GT	./.
chr1	109730933	.	C	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	109730934	.	A	.	.	LowGQX	END=109730937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109730938	.	G	.	.	LowGQX	.	GT	./.
chr1	109730939	.	C	.	.	LowGQX	END=109730950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109730951	.	A	.	.	LowGQX	.	GT	./.
chr1	109730952	.	T	.	.	LowGQX	END=109730955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109730956	.	G	.	.	LowGQX	.	GT	./.
chr1	109730957	.	T	.	.	LowGQX	END=109730958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109730959	.	C	.	.	LowGQX	.	GT	./.
chr1	109730960	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109730961	.	T	.	.	LowGQX	.	GT	./.
chr1	109730962	.	A	.	.	LowGQX	END=109730977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109730978	.	T	.	.	LowGQX	.	GT	./.
chr1	109731686	.	A	.	.	LowGQX	END=109731818	GT	./.
chr1	109732210	.	T	.	.	LowGQX	END=109732309	GT	./.
chr1	109733986	.	A	.	.	LowGQX	END=109734090	GT	./.
chr1	109734091	.	G	.	.	LowGQX	END=109734095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109734346	.	A	.	.	LowGQX	END=109734446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109734447	.	T	.	.	LowGQX	END=109734487	GT	./.
chr1	109735231	.	A	.	.	LowGQX	END=109735254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109735255	.	T	.	.	LowGQX	END=109735498	GT	./.
chr1	109737041	.	A	.	.	LowGQX	END=109737062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109737063	.	C	.	.	LowGQX	END=109737130	GT	./.
chr1	109737131	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109737132	.	T	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	109737133	.	G	.	.	LowGQX	END=109737155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109737156	.	C	.	.	LowGQX	.	GT	./.
chr1	109737157	.	T	.	.	LowGQX	END=109737169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109737170	.	G	.	.	LowGQX	.	GT	./.
chr1	109737171	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109737172	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	109737173	.	T	.	.	LowGQX	END=109737182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109737183	.	C	.	.	LowGQX	.	GT	./.
chr1	109737184	.	C	.	.	LowGQX	END=109737194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109737195	.	C	.	.	LowGQX	.	GT	./.
chr1	109737196	.	C	.	.	LowGQX	END=109737212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109737213	.	C	.	.	LowGQX	.	GT	./.
chr1	109737214	.	C	.	.	LowGQX	END=109737218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109740094	.	A	.	.	LowGQX	END=109740103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109740104	.	A	.	.	LowGQX	END=109740278	GT	./.
chr1	109740599	.	A	.	.	LowGQX	END=109740699	GT	./.
chr1	109741193	.	A	.	.	LowGQX	END=109741211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109741212	.	A	.	.	LowGQX	END=109741298	GT	./.
chr1	109742474	.	A	.	.	LowGQX	END=109742604	GT	./.
chr1	109742679	.	A	.	.	LowGQX	END=109742861	GT	./.
chr1	109743355	.	A	.	.	LowGQX	END=109743405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109743406	.	T	.	.	LowGQX	END=109743435	GT	./.
chr1	109743436	.	A	.	.	LowGQX	END=109743446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109743447	.	C	.	.	LowGQX	.	GT	./.
chr1	109743448	.	G	.	.	LowGQX	END=109743464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109743465	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	109743466	.	C	.	.	LowGQX	END=109743524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109743908	.	C	.	.	LowGQX	END=109743927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109743928	.	T	.	.	LowGQX	.	GT	./.
chr1	109743929	.	G	.	.	LowGQX	END=109743935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109743936	.	T	.	.	LowGQX	END=109744007	GT	./.
chr1	109745475	.	G	.	.	LowGQX	END=109745636	GT	./.
chr1	109756613	.	A	.	.	LowGQX	END=109756752	GT	./.
chr1	109766586	.	T	.	.	LowGQX	END=109766595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766596	.	C	.	.	LowGQX	.	GT	./.
chr1	109766597	.	T	.	.	LowGQX	END=109766600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766601	.	T	.	.	LowGQX	.	GT	./.
chr1	109766602	.	A	.	.	LowGQX	END=109766604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766605	.	T	.	.	LowGQX	.	GT	./.
chr1	109766606	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766607	.	T	.	.	LowGQX	.	GT	./.
chr1	109766608	.	C	.	.	LowGQX	END=109766614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766615	.	A	.	.	LowGQX	.	GT	./.
chr1	109766616	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766617	.	A	.	.	LowGQX	END=109766618	GT	./.
chr1	109766619	.	C	.	.	LowGQX	END=109766620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766621	.	T	.	.	LowGQX	.	GT	./.
chr1	109766622	.	G	.	.	LowGQX	END=109766624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766625	.	C	.	.	LowGQX	.	GT	./.
chr1	109766626	.	A	.	.	LowGQX	END=109766631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766632	.	A	.	.	LowGQX	.	GT	./.
chr1	109766633	.	A	.	.	LowGQX	END=109766635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766636	.	A	.	.	LowGQX	.	GT	./.
chr1	109766637	.	C	.	.	LowGQX	END=109766638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766639	.	T	.	.	LowGQX	.	GT	./.
chr1	109766640	.	A	.	.	LowGQX	END=109766641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766642	.	G	.	.	LowGQX	.	GT	./.
chr1	109766643	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766644	.	A	.	.	LowGQX	END=109766645	GT	./.
chr1	109766646	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766647	.	A	.	.	LowGQX	.	GT	./.
chr1	109766648	.	A	.	.	LowGQX	END=109766649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766650	.	A	.	.	LowGQX	.	GT	./.
chr1	109766651	.	C	.	.	LowGQX	END=109766654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766655	.	C	.	.	LowGQX	.	GT	./.
chr1	109766656	.	G	.	.	LowGQX	END=109766657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766658	.	A	.	.	LowGQX	.	GT	./.
chr1	109766659	.	G	.	.	LowGQX	END=109766661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766662	.	A	.	.	LowGQX	END=109766663	GT	./.
chr1	109766664	.	A	.	.	LowGQX	END=109766665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766666	.	T	.	.	LowGQX	.	GT	./.
chr1	109766667	.	G	.	.	LowGQX	END=109766668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109766669	.	A	.	.	LowGQX	END=109766685	GT	./.
chr1	109770965	.	T	.	.	LowGQX	END=109771064	GT	./.
chr1	109772034	.	A	.	.	LowGQX	END=109772196	GT	./.
chr1	109773467	.	C	.	.	LowGQX	END=109773645	GT	./.
chr1	109774251	.	A	.	.	LowGQX	END=109774410	GT	./.
chr1	109777830	.	A	.	.	LowGQX	END=109778055	GT	./.
chr1	109778597	.	A	.	.	LowGQX	END=109778730	GT	./.
chr1	109779011	.	A	.	.	LowGQX	END=109779147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109779148	.	A	.	.	LowGQX	END=109779172	GT	./.
chr1	109779410	.	G	.	.	LowGQX	END=109779498	GT	./.
chr1	109779499	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109779500	.	T	.	.	LowGQX	.	GT	./.
chr1	109779501	.	T	.	.	LowGQX	END=109779509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109779864	.	A	.	.	LowGQX	END=109780053	GT	./.
chr1	109780351	.	A	.	.	LowGQX	END=109780512	GT	./.
chr1	109792700	.	A	.	.	LowGQX	END=109792706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109792707	.	G	.	.	LowGQX	.	GT	./.
chr1	109792708	.	A	.	.	LowGQX	END=109792718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109792719	.	C	.	.	LowGQX	END=109792721	GT	./.
chr1	109792722	.	C	.	.	LowGQX	END=109792794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109792795	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	109792796	.	A	.	.	LowGQX	END=109792808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	109792809	.	C	.	36	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.01:60:6
chr1	109792810	.	T	.	.	LowGQX	END=109792815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	109792816	.	T	.	36	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.01:60:6
chr1	109792817	.	C	.	.	LowGQX	END=109792833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	109792834	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	109792835	.	G	.	.	LowGQX	END=109792857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	109792858	.	C	.	.	LowGQX	END=109792862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	109792863	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	109792864	.	G	.	.	LowGQX	END=109792868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	109792869	.	G	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:5:9.03:60:9
chr1	109792870	.	C	.	.	LowGQX	END=109792871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	109792872	.	C	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	109792873	.	T	.	.	LowGQX	END=109792875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	109792876	.	C	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	109792877	.	C	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	109792878	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	109792879	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	109792880	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	109792881	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	109792882	.	T	.	.	LowGQX	END=109792883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	109792884	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	109792885	.	G	.	.	LowGQX	END=109792887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	109792888	.	T	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	109792889	.	C	.	.	LowGQX	END=109792890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	109792891	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	109792892	.	A	.	.	LowGQX	END=109792893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	109792894	.	C	.	.	LowGQX	END=109792897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	109792898	.	G	.	6.90	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.02:60:0
chr1	109792899	.	G	.	.	LowGQX	END=109792903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	109792904	.	A	.	.	LowGQX	END=109792905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	109792906	.	A	.	.	LowGQX	END=109792909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	109792910	.	G	.	.	LowGQX	END=109792922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	109792923	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	109792924	.	G	.	.	LowGQX	END=109792940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	109792941	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	109792942	.	G	.	.	LowGQX	END=109792954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	109792955	.	C	.	.	LowGQX	END=109792957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109792958	.	A	.	.	LowGQX	.	GT	./.
chr1	109792959	.	C	.	.	LowGQX	END=109792960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	109792961	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	109792962	.	C	.	.	LowGQX	END=109792976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	109792977	.	T	.	2.30	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0:60:0
chr1	109792978	.	T	.	.	LowGQX	END=109793109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793110	.	T	.	.	LowGQX	END=109793188	GT	./.
chr1	109793189	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793190	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	109793191	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793192	.	A	.	.	LowGQX	END=109793194	GT	./.
chr1	109793195	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793196	.	G	.	.	LowGQX	END=109793197	GT	./.
chr1	109793198	.	C	.	.	LowGQX	END=109793199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793200	.	C	.	.	LowGQX	.	GT	./.
chr1	109793201	.	T	.	.	LowGQX	END=109793204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793205	.	T	.	.	LowGQX	END=109793206	GT	./.
chr1	109793207	.	G	.	.	LowGQX	END=109793209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793210	.	G	.	.	LowGQX	.	GT	./.
chr1	109793211	.	T	.	.	LowGQX	END=109793212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793213	.	G	.	.	LowGQX	.	GT	./.
chr1	109793214	.	G	.	.	LowGQX	END=109793215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793216	.	A	.	.	LowGQX	END=109793219	GT	./.
chr1	109793220	.	G	.	.	LowGQX	END=109793221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793222	.	A	.	.	LowGQX	END=109793223	GT	./.
chr1	109793224	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793225	.	T	.	.	LowGQX	END=109793226	GT	./.
chr1	109793227	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793228	.	A	.	.	LowGQX	.	GT	./.
chr1	109793229	.	T	.	.	LowGQX	END=109793230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793231	.	C	.	.	LowGQX	.	GT	./.
chr1	109793232	.	A	.	.	LowGQX	END=109793239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793240	.	A	.	.	LowGQX	.	GT	./.
chr1	109793241	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793242	.	T	.	.	LowGQX	.	GT	./.
chr1	109793243	.	T	.	.	LowGQX	END=109793245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793246	.	A	.	.	LowGQX	.	GT	./.
chr1	109793247	.	G	.	.	LowGQX	END=109793253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793254	.	A	.	.	LowGQX	END=109793255	GT	./.
chr1	109793256	.	C	.	.	LowGQX	END=109793267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793268	.	A	.	.	LowGQX	.	GT	./.
chr1	109793269	.	G	.	.	LowGQX	END=109793270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793271	.	G	.	.	LowGQX	.	GT	./.
chr1	109793272	.	C	.	.	LowGQX	END=109793281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793282	.	A	.	.	LowGQX	END=109793283	GT	./.
chr1	109793284	.	C	.	.	LowGQX	END=109793286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793287	.	G	.	.	LowGQX	.	GT	./.
chr1	109793288	.	C	.	.	LowGQX	END=109793298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793299	.	G	.	.	LowGQX	.	GT	./.
chr1	109793300	.	T	.	.	LowGQX	END=109793303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793304	.	A	.	.	LowGQX	.	GT	./.
chr1	109793305	.	T	.	.	LowGQX	END=109793317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793318	.	T	.	.	LowGQX	.	GT	./.
chr1	109793319	.	C	.	.	LowGQX	END=109793321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793322	.	C	.	.	LowGQX	.	GT	./.
chr1	109793323	.	C	.	.	LowGQX	END=109793338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793339	.	C	.	.	LowGQX	END=109793411	GT	./.
chr1	109793412	.	C	.	.	LowGQX	END=109793645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793646	.	T	.	.	LowGQX	END=109793837	GT	./.
chr1	109793838	.	G	.	.	LowGQX	END=109793864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793865	.	T	.	.	LowGQX	.	GT	./.
chr1	109793866	.	G	.	.	LowGQX	END=109793874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109793875	.	G	.	.	LowGQX	.	GT	./.
chr1	109793876	.	A	.	.	LowGQX	END=109794096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109794097	.	A	.	.	LowGQX	.	GT	./.
chr1	109794098	.	C	.	.	LowGQX	END=109794108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109794109	.	T	.	.	LowGQX	END=109794460	GT	./.
chr1	109794461	.	C	.	.	LowGQX	END=109794498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109794499	.	G	.	.	LowGQX	END=109794512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	109794513	.	C	.	.	LowGQX	END=109794517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109794518	.	A	.	.	LowGQX	.	GT	./.
chr1	109794519	.	C	.	.	LowGQX	END=109794525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109794526	.	A	C	3.09	LowGQ;LowGQX;LowQD;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=1.54;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:19.67:30,0,20:60:3:0.500
chr1	109794527	.	C	.	.	LowGQX	END=109794535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109794536	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	109794537	.	A	.	.	LowGQX	.	GT	./.
chr1	109794538	.	C	.	.	LowGQX	END=109794557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109794558	.	C	.	.	LowGQX	.	GT	./.
chr1	109794559	.	A	.	.	LowGQX	END=109794569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109794570	.	A	.	.	LowGQX	.	GT	./.
chr1	109794571	.	G	.	.	LowGQX	END=109794583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109794584	.	G	.	.	LowGQX	END=109794607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	109794608	.	A	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	109794609	.	C	.	.	LowGQX	END=109794611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	109794612	.	T	.	.	LowGQX	END=109794615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	109794616	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	109794617	.	C	.	.	LowGQX	END=109794619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	109794620	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	109794621	.	T	.	.	LowGQX	END=109794626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	109794627	.	C	.	.	LowGQX	END=109794629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	109794630	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	109794631	.	A	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	109794632	.	C	.	.	LowGQX	END=109794635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	109794636	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	109794637	.	C	.	.	LowGQX	END=109794642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	109794643	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	109794644	.	C	.	.	LowGQX	END=109794649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	109794650	.	G	.	.	LowGQX	END=109794698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109794699	.	G	.	.	LowGQX	END=109794703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	109794704	.	C	.	.	LowGQX	END=109794708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	109794709	.	G	.	4.58	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.01:60:0
chr1	109794710	.	C	.	.	LowGQX	END=109794722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	109794723	.	C	.	.	LowGQX	END=109794735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	109794736	.	C	.	.	LowGQX	END=109794740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	109794741	.	G	.	.	LowGQX	END=109794749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	109794750	.	G	.	.	LowGQX	END=109794753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	109794754	.	G	.	.	LowGQX	END=109794769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	109794770	.	G	.	.	PASS	END=109794771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	109794772	.	A	.	.	LowGQX	END=109794773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	109794774	.	T	.	.	PASS	END=109794775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	109794776	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	109794777	.	G	.	.	PASS	END=109794781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	109794782	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	109794783	.	C	.	.	PASS	END=109794788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	109794789	.	A	.	.	LowGQX	END=109794790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	109794791	.	A	.	.	PASS	END=109794800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	109794801	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:3:60
chr1	109794802	.	A	.	.	PASS	END=109794807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	109794808	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:24:60
chr1	109794809	.	C	.	.	PASS	END=109794812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	109794813	.	C	.	.	PASS	END=109794817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	109794818	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:30:60
chr1	109794819	.	C	.	.	PASS	END=109794842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	109794843	.	C	.	.	PASS	END=109794878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	109794879	.	G	.	.	PASS	END=109794884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:60:60
chr1	109794885	.	C	.	.	PASS	END=109794894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	109794895	.	G	.	.	PASS	END=109794912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	109794913	.	G	.	.	PASS	END=109794975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	109794976	.	C	.	.	PASS	END=109795012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	109795013	.	C	.	.	PASS	END=109795021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	109795022	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:42:60
chr1	109795023	.	C	.	.	PASS	END=109795025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	109795026	.	T	C	1041.88	PASS	DP=39;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7868;MQ=60;MQ0=0;QD=26.71;SB=-558.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,39:39:78.26:1075,78,0:60:78:1.000
chr1	109795027	.	G	.	.	PASS	END=109795044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	109795045	.	A	.	.	PASS	END=109795046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	109795047	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:51:60
chr1	109795048	.	C	.	.	PASS	END=109795058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	109795059	.	T	.	.	PASS	END=109795078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	109795079	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	109795080	.	C	.	.	PASS	END=109795086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	109795087	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	109795088	.	C	.	.	LowGQX	END=109795099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	109795100	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	109795101	.	C	.	.	LowGQX	END=109795123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	109795124	.	T	.	.	LowGQX	END=109795125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	109795126	.	A	.	.	LowGQX	END=109795132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	109795133	.	A	.	.	LowGQX	END=109795134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	109795135	.	G	.	.	LowGQX	END=109795143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	109795144	.	T	.	.	LowGQX	END=109795145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	109795146	.	C	.	.	LowGQX	END=109795148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	109795149	.	G	.	.	LowGQX	END=109795155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	109795156	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	109795157	.	C	.	.	LowGQX	END=109795169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	109795170	.	T	.	.	LowGQX	END=109795179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	109795180	.	G	.	.	LowGQX	END=109795181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	109795182	.	T	.	.	LowGQX	END=109795186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	109795187	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	109795188	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	109795189	.	C	.	.	LowGQX	END=109795193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	109795194	.	C	.	.	LowGQX	END=109795197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	109795198	.	A	.	.	LowGQX	END=109795201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	109795202	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	109795203	.	C	.	.	LowGQX	END=109795226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	109795227	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	109795228	.	G	.	.	LowGQX	END=109795271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	109795272	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	109795273	.	G	.	.	LowGQX	END=109795284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	109795285	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	109795286	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	109795287	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	109795288	.	G	.	.	LowGQX	END=109795298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	109795299	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	109795300	.	G	.	.	LowGQX	END=109795318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	109795319	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	109795320	.	G	.	.	LowGQX	END=109795323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	109795324	.	A	.	.	LowGQX	END=109795353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109795354	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	109795355	.	C	.	.	LowGQX	END=109795414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109795415	.	T	.	.	LowGQX	END=109795759	GT	./.
chr1	109795760	.	C	.	.	LowGQX	END=109795940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109795941	.	T	.	.	LowGQX	END=109796013	GT	./.
chr1	109801052	.	A	.	.	LowGQX	END=109801226	GT	./.
chr1	109801227	.	G	.	.	LowGQX	END=109801245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109801246	.	A	.	.	LowGQX	END=109801266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	109801267	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	109801268	.	C	.	.	LowGQX	END=109801273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	109801274	.	G	T	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.05;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.29:30,0,70:60:3:0.333
chr1	109801275	.	G	.	.	LowGQX	END=109801307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	109801308	.	C	.	4.58	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.01:60:0
chr1	109801309	.	A	.	.	LowGQX	END=109801353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	109801354	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:60
chr1	109801355	.	C	.	.	LowGQX	END=109801365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	109801366	.	G	.	.	LowGQX	END=109801386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	109801387	.	T	.	.	LowGQX	END=109801408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	109801409	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	109801410	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	109801411	.	G	.	.	PASS	END=109801425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	109801426	.	A	.	.	LowGQX	END=109801427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:60
chr1	109801428	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	109801429	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	109801430	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	109801431	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	109801432	.	A	.	.	PASS	END=109801436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	109801437	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	109801438	.	G	.	.	PASS	END=109801439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	109801440	.	C	.	.	LowGQX	END=109801473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	109801474	.	T	.	.	LowGQX	END=109801490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	109801491	.	G	.	.	LowGQX	END=109801505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	109801506	.	T	.	.	LowGQX	END=109801522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	109801523	.	C	.	.	LowGQX	END=109801542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	109801543	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	109801544	.	C	.	.	LowGQX	END=109801561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	109801562	.	C	.	.	LowGQX	END=109801586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	109801587	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	109801588	.	G	.	.	LowGQX	END=109801595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	109801596	.	T	.	.	LowGQX	END=109801633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	109801634	.	T	.	.	LowGQX	END=109801638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109801639	.	C	.	.	LowGQX	END=109801703	GT	./.
chr1	109803662	.	A	.	.	LowGQX	END=109803888	GT	./.
chr1	109804133	.	A	.	.	LowGQX	END=109804252	GT	./.
chr1	109804425	.	C	.	.	LowGQX	END=109804430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109804431	.	G	.	.	LowGQX	.	GT	./.
chr1	109804432	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109804433	.	A	.	.	LowGQX	.	GT	./.
chr1	109804434	.	G	.	.	LowGQX	END=109804449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109804450	.	T	.	.	LowGQX	END=109804524	GT	./.
chr1	109804907	.	A	.	.	LowGQX	END=109805068	GT	./.
chr1	109805426	.	A	.	.	LowGQX	END=109805428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109805429	.	T	.	.	LowGQX	.	GT	./.
chr1	109805430	.	C	.	.	LowGQX	END=109805593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109805762	.	A	.	.	LowGQX	END=109805891	GT	./.
chr1	109806231	.	A	.	.	LowGQX	END=109806251	GT	./.
chr1	109806252	.	C	.	.	LowGQX	END=109806286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109806287	.	T	.	.	LowGQX	.	GT	./.
chr1	109806288	.	C	.	.	LowGQX	END=109806295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109806296	.	C	.	.	LowGQX	.	GT	./.
chr1	109806297	.	C	.	.	LowGQX	END=109806305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109806306	.	A	.	.	LowGQX	.	GT	./.
chr1	109806307	.	C	.	.	LowGQX	END=109806352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109806353	.	T	.	.	LowGQX	.	GT	./.
chr1	109806354	.	C	.	.	LowGQX	END=109806401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109806698	.	A	.	.	LowGQX	END=109806989	GT	./.
chr1	109807074	.	A	.	.	LowGQX	END=109807190	GT	./.
chr1	109807191	.	G	.	.	LowGQX	END=109807252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109807488	.	A	.	.	LowGQX	END=109807633	GT	./.
chr1	109807811	.	A	.	.	LowGQX	END=109807819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109807820	.	C	.	.	LowGQX	.	GT	./.
chr1	109807821	.	A	.	.	LowGQX	END=109807908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109807909	.	G	.	.	LowGQX	.	GT	./.
chr1	109807910	.	A	.	.	LowGQX	END=109807929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109807930	.	C	A	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	109807931	.	A	.	.	LowGQX	END=109807935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109808355	.	A	.	.	LowGQX	END=109808391	GT	./.
chr1	109808392	.	C	.	.	LowGQX	END=109808542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109808725	.	A	.	.	LowGQX	END=109808830	GT	./.
chr1	109810168	.	A	.	.	LowGQX	END=109810187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109810188	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	109810189	.	T	.	.	LowGQX	.	GT	./.
chr1	109810190	.	G	.	.	LowGQX	END=109810206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109810207	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	109810208	.	C	.	.	LowGQX	END=109810216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109810217	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	109810218	.	A	.	.	LowGQX	END=109810227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109810228	.	C	.	.	LowGQX	.	GT	./.
chr1	109810229	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109810230	.	G	.	24.37	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.76:60:1
chr1	109810231	.	C	.	.	LowGQX	END=109810237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109810238	.	A	.	31.25	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:2.04:60:2
chr1	109810239	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	109810240	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109810241	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	109810242	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109810243	.	C	.	.	LowGQX	.	GT	./.
chr1	109810244	.	T	.	.	LowGQX	END=109810256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109810257	.	A	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	109810258	.	G	.	.	LowGQX	END=109810262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109810263	.	T	.	.	LowGQX	.	GT	./.
chr1	109810264	.	C	.	.	LowGQX	END=109810267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109810471	.	A	.	.	LowGQX	END=109810684	GT	./.
chr1	109811201	.	A	.	.	LowGQX	END=109811260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811261	.	T	.	.	LowGQX	END=109811328	GT	./.
chr1	109811329	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811330	.	C	.	.	LowGQX	.	GT	./.
chr1	109811331	.	C	.	.	LowGQX	END=109811332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811333	.	A	.	.	LowGQX	.	GT	./.
chr1	109811334	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811335	.	A	.	.	LowGQX	.	GT	./.
chr1	109811336	.	A	.	.	LowGQX	END=109811340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811341	.	C	.	.	LowGQX	.	GT	./.
chr1	109811342	.	G	.	.	LowGQX	END=109811346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811347	.	A	.	.	LowGQX	.	GT	./.
chr1	109811348	.	C	.	.	LowGQX	END=109811351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811352	.	C	.	.	LowGQX	.	GT	./.
chr1	109811353	.	C	.	.	LowGQX	END=109811354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811355	.	A	.	.	LowGQX	.	GT	./.
chr1	109811356	.	A	.	.	LowGQX	END=109811366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811367	.	C	.	.	LowGQX	.	GT	./.
chr1	109811368	.	A	.	.	LowGQX	END=109811379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811380	.	A	.	.	LowGQX	.	GT	./.
chr1	109811381	.	A	.	.	LowGQX	END=109811388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811500	.	A	.	.	LowGQX	END=109811501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811502	.	T	.	.	LowGQX	.	GT	./.
chr1	109811503	.	C	.	.	LowGQX	END=109811508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811509	.	C	.	.	LowGQX	.	GT	./.
chr1	109811510	.	G	.	.	LowGQX	END=109811517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811518	.	C	.	.	LowGQX	END=109811519	GT	./.
chr1	109811520	.	T	.	.	LowGQX	END=109811528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811529	.	G	.	.	LowGQX	.	GT	./.
chr1	109811530	.	G	.	.	LowGQX	END=109811534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811535	.	T	.	.	LowGQX	.	GT	./.
chr1	109811536	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	109811537	.	G	.	.	LowGQX	END=109811538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811539	.	T	.	.	LowGQX	.	GT	./.
chr1	109811540	.	G	.	.	LowGQX	END=109811542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811543	.	G	.	.	LowGQX	.	GT	./.
chr1	109811544	.	C	.	.	LowGQX	END=109811553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811554	.	C	.	.	LowGQX	.	GT	./.
chr1	109811555	.	C	.	.	LowGQX	END=109811632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109811730	.	A	.	.	LowGQX	END=109811929	GT	./.
chr1	109812044	.	A	.	.	LowGQX	END=109812156	GT	./.
chr1	109812157	.	G	.	.	LowGQX	END=109812215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109812314	.	A	.	.	LowGQX	END=109812428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109812429	.	T	.	.	LowGQX	.	GT	./.
chr1	109812430	.	T	.	.	LowGQX	END=109812432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109812433	.	T	.	.	LowGQX	.	GT	./.
chr1	109812434	.	C	.	.	LowGQX	END=109812444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109812553	.	A	.	.	LowGQX	END=109812757	GT	./.
chr1	109813046	.	A	.	.	LowGQX	END=109813224	GT	./.
chr1	109813547	.	A	.	.	LowGQX	END=109813548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	109813549	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:3.01:60:3
chr1	109813550	.	G	.	.	LowGQX	END=109813560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109813561	.	G	.	.	LowGQX	END=109813565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	109813566	.	G	.	4.69	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.01:60:0
chr1	109813567	.	A	.	.	LowGQX	END=109813647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	109813648	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	109813649	.	C	.	.	LowGQX	END=109813661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	109813662	.	G	.	.	LowGQX	END=109813663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109813829	.	C	.	.	LowGQX	END=109813853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	109813854	.	T	.	.	LowGQX	END=109813856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	109813857	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	109813858	.	T	.	.	LowGQX	END=109813866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109813867	.	C	.	.	LowGQX	.	GT	./.
chr1	109813868	.	C	.	.	LowGQX	END=109813893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109813894	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	109813895	.	G	.	.	LowGQX	END=109813898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109813899	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	109813900	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	109813901	.	T	.	.	LowGQX	END=109813928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109814006	.	A	.	.	LowGQX	END=109814044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109814045	.	C	.	.	LowGQX	END=109814136	GT	./.
chr1	109814220	.	A	.	.	LowGQX	END=109814318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109814319	.	T	.	.	LowGQX	END=109814346	GT	./.
chr1	109814898	.	A	.	.	LowGQX	END=109814974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109814975	.	A	.	.	LowGQX	END=109815029	GT	./.
chr1	109815257	.	C	.	.	LowGQX	END=109815356	GT	./.
chr1	109815453	.	A	.	.	LowGQX	END=109815651	GT	./.
chr1	109815766	.	A	.	.	LowGQX	END=109815960	GT	./.
chr1	109816031	.	A	.	.	LowGQX	END=109816175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109816176	.	A	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	109816177	.	G	.	.	LowGQX	END=109816193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109816194	.	A	.	.	LowGQX	END=109816230	GT	./.
chr1	109816231	.	G	.	.	LowGQX	END=109816237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109816238	.	C	.	.	LowGQX	.	GT	./.
chr1	109816239	.	C	.	.	LowGQX	END=109816242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109816243	.	G	.	.	LowGQX	.	GT	./.
chr1	109816244	.	C	.	.	LowGQX	END=109816294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109816608	.	T	.	.	LowGQX	END=109816612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:56
chr1	109816613	.	T	.	33	LowGQX	DP=2;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:56:3
chr1	109816614	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:56
chr1	109816615	.	T	.	33	LowGQX	DP=2;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:56:3
chr1	109816616	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:56
chr1	109816617	.	T	.	.	LowGQX	.	GT	./.
chr1	109816618	.	G	.	.	LowGQX	END=109816620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:56
chr1	109816621	.	A	.	33	LowGQX	DP=2;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:56:3
chr1	109816622	.	C	.	.	LowGQX	END=109816628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:56
chr1	109816629	.	T	.	33	LowGQX	DP=2;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:56:3
chr1	109816630	.	T	.	.	LowGQX	END=109816634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:56
chr1	109816635	.	C	.	.	LowGQX	.	GT	./.
chr1	109816636	.	C	.	.	LowGQX	END=109816638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:56
chr1	109816639	.	T	.	33	LowGQX	DP=2;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:56:3
chr1	109816640	.	C	.	.	LowGQX	END=109816644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:56
chr1	109816645	.	T	.	33	LowGQX	DP=2;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:56:3
chr1	109816646	.	T	.	.	LowGQX	.	GT	./.
chr1	109816647	.	T	.	.	LowGQX	END=109816650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:56
chr1	109816651	.	T	.	.	LowGQX	.	GT	./.
chr1	109816652	.	T	.	.	LowGQX	END=109816653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:52
chr1	109816654	.	T	.	.	LowGQX	END=109816655	GT	./.
chr1	109816656	.	T	.	.	LowGQX	END=109816657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:52
chr1	109816658	.	A	.	.	LowGQX	.	GT	./.
chr1	109816659	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:52
chr1	109816660	.	T	.	.	LowGQX	END=109816662	GT	./.
chr1	109816663	.	C	.	.	LowGQX	END=109816667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:52
chr1	109816668	.	T	.	.	LowGQX	END=109816670	GT	./.
chr1	109816671	.	A	.	.	LowGQX	END=109816674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:52
chr1	109816675	.	T	.	.	LowGQX	END=109816676	GT	./.
chr1	109816677	.	G	.	.	LowGQX	END=109816679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:52
chr1	109816680	.	C	.	.	LowGQX	END=109816707	GT	./.
chr1	109822711	.	A	.	.	LowGQX	END=109822810	GT	./.
chr1	109823015	.	G	.	.	LowGQX	END=109823028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823029	.	T	.	.	LowGQX	END=109823046	GT	./.
chr1	109823047	.	G	.	.	LowGQX	END=109823052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823053	.	C	.	.	LowGQX	.	GT	./.
chr1	109823054	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823055	.	G	.	.	LowGQX	.	GT	./.
chr1	109823056	.	C	.	.	LowGQX	END=109823057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823058	.	G	.	.	LowGQX	.	GT	./.
chr1	109823059	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823060	.	T	.	.	LowGQX	.	GT	./.
chr1	109823061	.	T	.	.	LowGQX	END=109823063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823064	.	T	.	.	LowGQX	END=109823066	GT	./.
chr1	109823067	.	G	.	.	LowGQX	END=109823069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823070	.	T	.	.	LowGQX	END=109823071	GT	./.
chr1	109823072	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823073	.	C	.	.	LowGQX	.	GT	./.
chr1	109823074	.	A	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	109823075	.	C	.	.	LowGQX	.	GT	./.
chr1	109823076	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823077	.	C	.	.	LowGQX	.	GT	./.
chr1	109823078	.	A	.	.	LowGQX	END=109823081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823082	.	C	.	.	LowGQX	END=109823083	GT	./.
chr1	109823084	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823085	.	G	.	.	LowGQX	.	GT	./.
chr1	109823086	.	A	.	.	LowGQX	END=109823090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823091	.	T	.	.	LowGQX	END=109823092	GT	./.
chr1	109823093	.	A	.	.	LowGQX	END=109823094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823095	.	T	.	.	LowGQX	.	GT	./.
chr1	109823096	.	C	.	.	LowGQX	END=109823098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823099	.	T	.	.	LowGQX	END=109823100	GT	./.
chr1	109823101	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823102	.	G	.	.	LowGQX	.	GT	./.
chr1	109823103	.	A	.	.	LowGQX	END=109823104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823105	.	A	.	.	LowGQX	.	GT	./.
chr1	109823106	.	C	.	.	LowGQX	END=109823107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823108	.	G	.	.	LowGQX	END=109823109	GT	./.
chr1	109823110	.	A	.	.	LowGQX	END=109823111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823112	.	C	.	.	LowGQX	END=109823114	GT	./.
chr1	109823397	.	A	.	.	LowGQX	END=109823432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823433	.	A	.	.	LowGQX	END=109823450	GT	./.
chr1	109823451	.	C	.	.	LowGQX	END=109823452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823453	.	C	.	.	LowGQX	END=109823454	GT	./.
chr1	109823455	.	T	.	.	LowGQX	END=109823460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823461	.	G	.	.	LowGQX	END=109823463	GT	./.
chr1	109823464	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	109823465	.	A	.	.	LowGQX	END=109823467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823468	.	G	.	.	LowGQX	.	GT	./.
chr1	109823469	.	A	.	.	LowGQX	END=109823473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823474	.	C	.	.	LowGQX	.	GT	./.
chr1	109823475	.	C	.	.	LowGQX	END=109823486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823487	.	A	.	.	LowGQX	.	GT	./.
chr1	109823488	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823489	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	109823490	.	T	.	.	LowGQX	END=109823491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823492	.	T	.	.	LowGQX	.	GT	./.
chr1	109823493	.	G	.	.	LowGQX	END=109823496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823497	.	G	.	.	LowGQX	.	GT	./.
chr1	109823498	.	G	.	.	LowGQX	END=109823500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823501	.	G	.	.	LowGQX	END=109823503	GT	./.
chr1	109823504	.	C	.	.	LowGQX	END=109823510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823511	.	G	.	.	LowGQX	END=109823512	GT	./.
chr1	109823513	.	T	.	.	LowGQX	END=109823515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823516	.	T	.	.	LowGQX	.	GT	./.
chr1	109823517	.	G	.	.	LowGQX	END=109823519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823520	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	109823521	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	109823522	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823523	.	C	.	.	LowGQX	.	GT	./.
chr1	109823524	.	A	.	.	LowGQX	END=109823525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823526	.	T	.	.	LowGQX	.	GT	./.
chr1	109823527	.	C	.	.	LowGQX	END=109823534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823535	.	A	.	.	LowGQX	.	GT	./.
chr1	109823536	.	G	.	.	LowGQX	END=109823538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823539	.	C	.	.	LowGQX	.	GT	./.
chr1	109823540	.	T	.	.	LowGQX	END=109823545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823546	.	T	.	.	LowGQX	.	GT	./.
chr1	109823547	.	G	.	.	LowGQX	END=109823559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823560	.	G	.	.	LowGQX	.	GT	./.
chr1	109823561	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823562	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	109823563	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823564	.	G	.	.	LowGQX	.	GT	./.
chr1	109823565	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823566	.	T	.	.	LowGQX	.	GT	./.
chr1	109823567	.	G	.	.	LowGQX	END=109823592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823593	.	T	.	.	LowGQX	.	GT	./.
chr1	109823594	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	109823595	.	C	.	.	LowGQX	END=109823596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823597	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	109823598	.	C	.	.	LowGQX	END=109823601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109823602	.	G	.	.	LowGQX	.	GT	./.
chr1	109823603	.	G	.	.	LowGQX	END=109823607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823608	.	C	.	.	LowGQX	.	GT	./.
chr1	109823609	.	G	.	.	LowGQX	END=109823611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823612	.	G	.	.	LowGQX	.	GT	./.
chr1	109823613	.	A	.	.	LowGQX	END=109823616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823617	.	T	.	.	LowGQX	.	GT	./.
chr1	109823618	.	T	.	.	LowGQX	END=109823622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109823623	.	G	.	.	LowGQX	END=109823875	GT	./.
chr1	109824239	.	A	.	.	LowGQX	END=109824684	GT	./.
chr1	109825119	.	G	.	.	LowGQX	END=109825218	GT	./.
chr1	109825261	.	C	.	.	LowGQX	END=109825360	GT	./.
chr1	109836817	.	T	.	.	LowGQX	END=109836916	GT	./.
chr1	109837731	.	A	.	.	LowGQX	END=109837872	GT	./.
chr1	109837873	.	G	.	.	LowGQX	END=109837916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109837917	.	G	.	.	LowGQX	END=109837918	GT	./.
chr1	109837919	.	G	.	.	LowGQX	END=109837921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109838854	.	A	.	.	LowGQX	END=109839033	GT	./.
chr1	109839403	.	A	.	.	LowGQX	END=109839432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109839433	.	A	G	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	109839434	.	G	.	.	LowGQX	END=109839566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	109839670	.	A	.	.	LowGQX	END=109839813	GT	./.
chr1	109840042	.	A	.	.	LowGQX	END=109840241	GT	./.
chr1	109840786	.	A	.	.	LowGQX	END=109840938	GT	./.
chr1	109849427	.	C	.	.	LowGQX	END=109849646	GT	./.
chr1	109856623	.	T	.	.	PASS	END=109856638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	109856639	.	A	.	.	PASS	END=109856656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	109856657	.	C	.	.	PASS	END=109856722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	109856881	.	A	.	.	PASS	END=109856915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	109856916	.	A	.	.	PASS	END=109856995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	109856996	.	G	.	.	PASS	END=109857008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	109857292	.	A	.	.	PASS	END=109857305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	109857306	.	A	.	.	PASS	END=109857331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	109857332	.	T	.	.	PASS	END=109857402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	109859470	.	A	.	.	PASS	END=109859562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:77:60
chr1	109859563	.	C	.	.	PASS	END=109859579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	109859580	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:69:60
chr1	109859581	.	C	.	.	PASS	END=109859582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	109860473	.	A	.	.	PASS	END=109860536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:60
chr1	109860537	.	T	.	.	PASS	END=109860591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:257:99:60
chr1	109860592	.	C	.	.	PASS	END=109860593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:256:99:60
chr1	109865552	.	A	.	.	PASS	END=109865578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	109865579	.	G	.	.	PASS	END=109865604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	109865605	.	A	.	.	PASS	END=109865636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	109865637	.	C	.	.	PASS	END=109865719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	109865720	.	A	.	.	PASS	END=109865733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	109865734	.	T	.	.	PASS	END=109865745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	109867519	.	A	.	.	PASS	END=109867552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	109867553	.	G	.	.	PASS	END=109867695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	109867696	.	T	.	.	PASS	END=109867707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	109867708	.	G	.	.	PASS	END=109867713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	109869612	.	A	.	.	PASS	END=109869630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	109869631	.	A	.	.	PASS	END=109869679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr1	109869680	.	G	.	.	PASS	END=109869741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr1	109869742	.	C	.	.	PASS	END=109869764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	109869765	.	T	.	.	PASS	END=109869782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	109869783	.	C	.	.	PASS	END=109869784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	109870119	.	A	.	.	PASS	END=109870170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	109870171	.	G	.	.	PASS	END=109870217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	109870218	.	G	.	.	PASS	END=109870225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:85:60
chr1	109878860	.	A	.	.	PASS	END=109878906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	109878907	.	C	.	.	PASS	END=109878962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	109878963	.	A	.	.	PASS	END=109878970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	109883314	.	G	.	.	PASS	END=109883316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr1	109883317	.	C	.	.	PASS	END=109883318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	109883319	.	G	.	.	PASS	END=109883322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr1	109883323	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:65:60
chr1	109883324	.	C	.	.	PASS	END=109883336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	109883337	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr1	109883338	.	A	.	.	PASS	END=109883357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	109883358	.	C	.	.	PASS	END=109883420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	109883421	.	T	.	.	PASS	END=109883477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	109883478	.	T	.	.	PASS	END=109883503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	109884594	.	C	.	.	PASS	END=109884611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	109884612	.	G	.	.	PASS	END=109884684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	109884685	.	A	.	.	PASS	END=109884749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	109884750	.	C	.	.	PASS	END=109884774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	109884775	.	T	G	1760.07	PASS	DP=61;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=28.85;SB=-962.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,61:61:99:1793,135,0:60:99:1.000
chr1	109884776	.	G	.	.	PASS	END=109884782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	109888371	.	A	.	.	PASS	END=109888424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	109888425	.	T	.	.	PASS	END=109888496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	109888497	.	T	.	.	PASS	END=109888505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	109890080	.	T	.	.	PASS	END=109890103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	109890104	.	C	.	.	PASS	END=109890179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	109893538	.	T	.	.	PASS	END=109893637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	109896987	.	A	.	.	PASS	END=109897002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	109897003	.	C	.	.	PASS	END=109897042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	109897043	.	A	.	.	PASS	END=109897102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	109897103	.	A	G	3835.06	PASS	BaseQRankSum=-2.064;DP=134;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-0.083;QD=28.62;ReadPosRankSum=1.037;SB=-1770.75	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,132:134:99:3835,247,0:60:99:0.985
chr1	109897104	.	A	.	.	PASS	END=109897137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	109897138	.	C	.	.	PASS	END=109897155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	109897937	.	C	.	.	PASS	END=109897967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	109897968	.	G	.	.	PASS	END=109897996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	109897997	.	A	.	.	PASS	END=109898007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	109898008	.	C	.	.	PASS	END=109898093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	109910017	.	T	.	.	PASS	END=109910038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	109910039	.	A	.	.	PASS	END=109910116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	109912132	.	A	.	.	PASS	END=109912150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	109912151	.	C	.	.	PASS	END=109912167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	109912168	.	A	.	.	PASS	END=109912231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	109940196	.	G	.	.	LowGQX	END=109940212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	109940213	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:12:60
chr1	109940214	.	G	.	.	LowGQX	END=109940219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:15:60
chr1	109940220	.	T	.	.	LowGQX	END=109940232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	109940233	.	G	.	.	LowGQX	END=109940258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:60
chr1	109940259	.	A	.	.	LowGQX	END=109940265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:60
chr1	109940266	.	G	.	.	LowGQX	END=109940269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	109940270	.	T	.	.	LowGQX	END=109940335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	109940336	.	A	.	42.03	LowGQX	DP=6;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:6:12.04:60:12
chr1	109940337	.	G	.	.	LowGQX	END=109940339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	109940340	.	C	.	.	LowGQX	END=109940344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	109940345	.	C	.	.	LowGQX	END=109940361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	109940362	.	A	.	.	LowGQX	END=109940377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	109940378	.	G	.	.	LowGQX	END=109940410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	109940411	.	T	.	.	LowGQX	END=109940479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	109940480	.	G	.	.	LowGQX	END=109940481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	109940482	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	109940483	.	A	.	.	LowGQX	END=109940488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	109940489	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	109940490	.	C	.	.	LowGQX	END=109940525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109944624	.	A	.	.	LowGQX	END=109944723	GT	./.
chr1	109952544	.	A	.	.	LowGQX	END=109952643	GT	./.
chr1	109953631	.	A	.	.	LowGQX	END=109953652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109953653	.	A	.	.	LowGQX	.	GT	./.
chr1	109953654	.	G	.	.	LowGQX	END=109953663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109953664	.	G	.	.	LowGQX	.	GT	./.
chr1	109953665	.	C	.	.	LowGQX	END=109953704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109953705	.	T	.	.	LowGQX	.	GT	./.
chr1	109953706	.	A	.	.	LowGQX	END=109953731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109953732	.	A	.	.	LowGQX	END=109953737	GT	./.
chr1	109954479	.	A	.	.	LowGQX	END=109954499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109954500	.	G	.	.	LowGQX	.	GT	./.
chr1	109954501	.	C	.	.	LowGQX	END=109954578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109954697	.	A	.	.	LowGQX	END=109954706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109954707	.	C	.	.	LowGQX	.	GT	./.
chr1	109954708	.	T	.	.	LowGQX	END=109954713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109954714	.	T	.	.	LowGQX	.	GT	./.
chr1	109954715	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109954716	.	C	.	.	LowGQX	.	GT	./.
chr1	109954717	.	A	.	.	LowGQX	END=109954768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109954769	.	T	.	.	LowGQX	.	GT	./.
chr1	109954770	.	C	.	.	LowGQX	END=109954798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	109954799	.	C	.	.	LowGQX	END=109954808	GT	./.
chr1	109955674	.	A	.	.	LowGQX	END=109955773	GT	./.
chr1	109957857	.	A	.	.	LowGQX	END=109957987	GT	./.
chr1	109964410	.	A	.	.	LowGQX	END=109964565	GT	./.
chr1	109968889	.	A	.	.	LowGQX	END=109968988	GT	./.
chr1	110009383	.	G	.	.	LowGQX	END=110009542	GT	./.
chr1	110009608	.	G	.	.	LowGQX	END=110009768	GT	./.
chr1	110018201	.	A	.	.	LowGQX	END=110018213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110018214	.	T	.	.	LowGQX	.	GT	./.
chr1	110018215	.	T	.	.	LowGQX	END=110018222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110018223	.	C	.	.	LowGQX	.	GT	./.
chr1	110018224	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110018225	.	G	.	.	LowGQX	.	GT	./.
chr1	110018226	.	G	.	.	LowGQX	END=110018233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110018234	.	G	.	.	LowGQX	.	GT	./.
chr1	110018235	.	C	.	.	LowGQX	END=110018251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110018252	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110018253	.	A	.	.	LowGQX	END=110018329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110019396	.	A	.	.	LowGQX	END=110019448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110019449	.	C	.	.	LowGQX	END=110019601	GT	./.
chr1	110020438	.	A	.	.	LowGQX	END=110020694	GT	./.
chr1	110021998	.	A	.	.	LowGQX	END=110022172	GT	./.
chr1	110026514	.	G	.	.	LowGQX	END=110026742	GT	./.
chr1	110028662	.	C	.	.	LowGQX	END=110028744	GT	./.
chr1	110028745	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110028746	.	T	.	.	LowGQX	.	GT	./.
chr1	110028747	.	G	.	.	LowGQX	END=110028748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110028749	.	G	.	.	LowGQX	.	GT	./.
chr1	110028750	.	A	.	.	LowGQX	END=110028761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110029126	.	A	.	.	LowGQX	END=110029234	GT	./.
chr1	110029627	.	A	.	.	LowGQX	END=110029639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110029640	.	G	.	.	LowGQX	.	GT	./.
chr1	110029641	.	G	.	.	LowGQX	END=110029665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110029666	.	G	.	.	LowGQX	.	GT	./.
chr1	110029667	.	G	.	.	LowGQX	END=110029699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110029700	.	C	.	.	LowGQX	END=110029701	GT	./.
chr1	110029702	.	G	.	.	LowGQX	END=110029703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110029704	.	A	.	.	LowGQX	END=110029841	GT	./.
chr1	110030234	.	A	.	.	LowGQX	END=110030428	GT	./.
chr1	110030943	.	C	.	.	LowGQX	END=110031010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110031011	.	A	.	.	LowGQX	END=110031096	GT	./.
chr1	110031467	.	A	.	.	LowGQX	END=110031626	GT	./.
chr1	110031627	.	C	.	.	LowGQX	END=110031724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110032519	.	A	.	.	LowGQX	END=110032587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110032588	.	A	.	.	LowGQX	.	GT	./.
chr1	110032589	.	G	.	.	LowGQX	END=110032613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110032614	.	C	.	.	LowGQX	.	GT	./.
chr1	110032615	.	A	.	.	LowGQX	END=110032623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110032624	.	C	.	.	LowGQX	.	GT	./.
chr1	110032625	.	C	.	.	LowGQX	END=110032700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110032701	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110032702	.	C	.	.	LowGQX	END=110032712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110032713	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110032714	.	C	.	.	LowGQX	END=110032722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110032723	.	T	.	.	LowGQX	.	GT	./.
chr1	110032724	.	G	.	.	LowGQX	END=110032752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110032891	.	A	.	.	LowGQX	END=110033016	GT	./.
chr1	110033542	.	A	.	.	LowGQX	END=110033744	GT	./.
chr1	110033745	.	T	.	.	LowGQX	END=110033789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110033790	.	A	.	.	LowGQX	.	GT	./.
chr1	110033791	.	C	.	.	LowGQX	END=110033814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110033815	.	T	.	.	LowGQX	.	GT	./.
chr1	110033816	.	C	.	.	LowGQX	END=110033839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110033840	.	A	.	.	LowGQX	.	GT	./.
chr1	110033841	.	G	.	.	LowGQX	END=110033853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110033854	.	T	.	.	LowGQX	.	GT	./.
chr1	110033855	.	C	.	.	LowGQX	END=110033866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110033867	.	A	.	.	LowGQX	.	GT	./.
chr1	110033868	.	C	.	.	LowGQX	END=110033881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110033882	.	A	.	.	LowGQX	.	GT	./.
chr1	110033883	.	G	.	.	LowGQX	END=110033887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110033888	.	C	.	.	LowGQX	.	GT	./.
chr1	110033889	.	T	.	.	LowGQX	END=110033894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110033895	.	A	.	.	LowGQX	END=110033989	GT	./.
chr1	110033990	.	C	.	.	LowGQX	END=110033991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110033992	.	G	.	.	LowGQX	.	GT	./.
chr1	110033993	.	C	.	.	LowGQX	END=110034000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110034001	.	A	.	.	LowGQX	END=110034002	GT	./.
chr1	110034003	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110034004	.	A	.	.	LowGQX	.	GT	./.
chr1	110034005	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110034006	.	A	.	.	LowGQX	END=110034007	GT	./.
chr1	110034008	.	C	.	.	LowGQX	END=110034010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110034011	.	T	.	.	LowGQX	.	GT	./.
chr1	110034012	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110034013	.	A	.	.	LowGQX	.	GT	./.
chr1	110034014	.	G	.	.	LowGQX	END=110034022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110034023	.	T	.	.	LowGQX	.	GT	./.
chr1	110034024	.	T	.	.	LowGQX	END=110034026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110034027	.	T	.	.	LowGQX	.	GT	./.
chr1	110034028	.	G	.	.	LowGQX	END=110034036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110034037	.	G	.	.	LowGQX	.	GT	./.
chr1	110034038	.	G	.	.	LowGQX	END=110034046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110034047	.	T	.	.	LowGQX	.	GT	./.
chr1	110034048	.	G	.	.	LowGQX	END=110034064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110034065	.	T	.	.	LowGQX	.	GT	./.
chr1	110034066	.	G	.	.	LowGQX	END=110034070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110034071	.	G	.	.	LowGQX	.	GT	./.
chr1	110034072	.	T	.	.	LowGQX	END=110034091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110034092	.	T	.	.	LowGQX	.	GT	./.
chr1	110034093	.	C	.	.	LowGQX	END=110034111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110034112	.	T	.	.	LowGQX	.	GT	./.
chr1	110034113	.	C	.	.	LowGQX	END=110034134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110034135	.	A	.	.	LowGQX	END=110034341	GT	./.
chr1	110035166	.	C	.	.	LowGQX	END=110035239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110035240	.	A	.	.	LowGQX	END=110035265	GT	./.
chr1	110036760	.	C	.	.	LowGQX	END=110036860	GT	./.
chr1	110036861	.	G	.	.	LowGQX	END=110036880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110036881	.	T	.	.	LowGQX	.	GT	./.
chr1	110036882	.	C	.	.	LowGQX	END=110036888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110036889	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110036890	.	G	.	.	LowGQX	END=110036893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110036894	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110036895	.	C	.	.	LowGQX	END=110036901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110036902	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110036903	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110036904	.	G	.	.	LowGQX	END=110036911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110037080	.	A	.	.	LowGQX	END=110037085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	110037086	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	110037087	.	T	.	.	LowGQX	END=110037097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	110037098	.	T	.	.	LowGQX	.	GT	./.
chr1	110037099	.	G	.	.	LowGQX	END=110037103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	110037104	.	A	.	.	LowGQX	END=110037245	GT	./.
chr1	110037734	.	A	.	.	LowGQX	END=110037833	GT	./.
chr1	110038300	.	G	.	.	LowGQX	END=110038392	GT	./.
chr1	110038393	.	G	.	.	LowGQX	END=110038461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110038462	.	C	.	.	LowGQX	.	GT	./.
chr1	110038463	.	G	.	.	LowGQX	END=110038482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110038483	.	A	.	.	LowGQX	.	GT	./.
chr1	110038484	.	C	.	.	LowGQX	END=110038490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110038491	.	C	.	.	LowGQX	.	GT	./.
chr1	110038492	.	A	.	.	LowGQX	END=110038518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110038519	.	T	.	.	LowGQX	.	GT	./.
chr1	110038520	.	T	.	.	LowGQX	END=110038533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110038534	.	A	.	.	LowGQX	.	GT	./.
chr1	110038535	.	G	.	.	LowGQX	END=110038543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110038544	.	G	.	.	LowGQX	END=110038610	GT	./.
chr1	110038611	.	C	.	.	LowGQX	END=110038620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110038621	.	T	.	.	LowGQX	.	GT	./.
chr1	110038622	.	G	.	.	LowGQX	END=110038627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110038628	.	T	.	.	LowGQX	.	GT	./.
chr1	110038629	.	C	.	.	LowGQX	END=110038675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110038676	.	T	.	.	LowGQX	.	GT	./.
chr1	110038677	.	C	.	.	LowGQX	END=110038736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110038737	.	T	.	.	LowGQX	.	GT	./.
chr1	110038738	.	C	.	.	LowGQX	END=110038883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110044960	.	A	.	.	LowGQX	END=110045059	GT	./.
chr1	110050051	.	G	.	.	LowGQX	END=110050600	GT	./.
chr1	110050601	.	C	.	.	LowGQX	END=110050782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110050783	.	A	.	.	LowGQX	END=110050788	GT	./.
chr1	110050789	.	T	.	.	LowGQX	END=110050921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110050922	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	110050923	.	G	.	.	LowGQX	END=110050972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110050973	.	T	.	.	LowGQX	.	GT	./.
chr1	110050974	.	T	.	.	LowGQX	END=110051026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110051027	.	T	.	.	LowGQX	.	GT	./.
chr1	110051028	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110051029	.	T	.	.	LowGQX	END=110051066	GT	./.
chr1	110051067	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:1:3.01:60:3
chr1	110051068	.	T	.	.	LowGQX	END=110051106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110051107	.	T	.	.	LowGQX	END=110051148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	110051149	.	A	T	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.727;QD=0.79;ReadPosRankSum=0.727;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,1:4:30.28:30,0,75:60:3:0.250
chr1	110051150	.	G	.	.	LowGQX	END=110051208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	110051209	.	A	.	.	LowGQX	END=110051278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110051279	.	T	.	.	LowGQX	.	GT	./.
chr1	110051280	.	C	.	.	LowGQX	END=110051293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110051294	.	T	.	.	LowGQX	.	GT	./.
chr1	110051295	.	C	.	.	LowGQX	END=110051353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110051354	.	T	.	.	LowGQX	END=110051373	GT	./.
chr1	110051374	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110051375	.	T	.	.	LowGQX	.	GT	./.
chr1	110051376	.	G	.	.	LowGQX	END=110051385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110051386	.	T	.	.	LowGQX	.	GT	./.
chr1	110051387	.	G	.	.	LowGQX	END=110051414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110051415	.	G	.	.	LowGQX	.	GT	./.
chr1	110051416	.	C	.	.	LowGQX	END=110051487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110051488	.	G	T	9.30	LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr1	110051489	.	A	.	.	LowGQX	END=110051536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110085256	.	G	.	.	LowGQX	END=110085290	GT	./.
chr1	110085291	.	G	.	.	LowGQX	END=110085343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085344	.	C	.	.	LowGQX	.	GT	./.
chr1	110085345	.	A	.	.	LowGQX	END=110085349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085350	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	110085351	.	A	.	.	LowGQX	END=110085384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085385	.	C	.	.	LowGQX	.	GT	./.
chr1	110085386	.	T	.	.	LowGQX	END=110085402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085403	.	C	.	.	LowGQX	.	GT	./.
chr1	110085404	.	T	.	.	LowGQX	END=110085422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085423	.	A	.	.	LowGQX	.	GT	./.
chr1	110085424	.	C	.	.	LowGQX	END=110085441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085442	.	C	.	.	LowGQX	END=110085445	GT	./.
chr1	110085446	.	A	.	.	LowGQX	END=110085447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085448	.	A	.	.	LowGQX	.	GT	./.
chr1	110085449	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085450	.	G	.	.	LowGQX	.	GT	./.
chr1	110085451	.	G	.	.	LowGQX	END=110085463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085464	.	A	.	.	LowGQX	.	GT	./.
chr1	110085465	.	T	.	.	LowGQX	END=110085467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085468	.	T	.	.	LowGQX	.	GT	./.
chr1	110085469	.	T	.	.	LowGQX	END=110085473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085474	.	T	.	.	LowGQX	.	GT	./.
chr1	110085475	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085476	.	C	.	.	LowGQX	.	GT	./.
chr1	110085477	.	C	.	.	LowGQX	END=110085488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085489	.	T	.	.	LowGQX	.	GT	./.
chr1	110085490	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085491	.	T	.	.	LowGQX	.	GT	./.
chr1	110085492	.	G	.	.	LowGQX	END=110085494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085495	.	C	.	.	LowGQX	.	GT	./.
chr1	110085496	.	G	.	.	LowGQX	END=110085507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085508	.	G	.	.	LowGQX	.	GT	./.
chr1	110085509	.	C	.	.	LowGQX	END=110085550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085551	.	A	.	.	LowGQX	.	GT	./.
chr1	110085552	.	G	.	.	LowGQX	END=110085579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085580	.	T	.	.	LowGQX	.	GT	./.
chr1	110085581	.	C	.	.	LowGQX	END=110085594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085595	.	G	.	.	LowGQX	END=110085607	GT	./.
chr1	110085611	.	A	.	.	LowGQX	END=110085771	GT	./.
chr1	110085772	.	C	.	.	LowGQX	END=110085979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110085980	.	G	.	.	LowGQX	END=110086039	GT	./.
chr1	110086040	.	G	.	.	LowGQX	END=110086137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110086138	.	G	.	.	LowGQX	END=110086164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	110086165	.	C	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	110086166	.	T	.	.	LowGQX	END=110086185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	110086186	.	G	.	.	LowGQX	END=110086236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	110086237	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr1	110086238	.	G	.	.	LowGQX	END=110086254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	110086255	.	A	.	.	LowGQX	END=110086282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	110086283	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	110086284	.	G	.	.	LowGQX	END=110086337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	110086338	.	T	.	.	LowGQX	END=110086339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	110086340	.	C	.	.	LowGQX	END=110086344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	110086345	.	T	.	.	LowGQX	END=110086357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110086358	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110086359	.	G	.	.	LowGQX	END=110086389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110086390	.	T	.	.	LowGQX	.	GT	./.
chr1	110086391	.	G	.	.	LowGQX	END=110086409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110086410	.	T	.	.	LowGQX	.	GT	./.
chr1	110086411	.	C	.	.	LowGQX	END=110086416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110086417	.	C	.	.	LowGQX	END=110086418	GT	./.
chr1	110086419	.	C	.	.	LowGQX	END=110086448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110086449	.	T	.	.	LowGQX	.	GT	./.
chr1	110086450	.	C	.	.	LowGQX	END=110086471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110086472	.	A	.	.	LowGQX	.	GT	./.
chr1	110086473	.	C	.	.	LowGQX	END=110086476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110086477	.	G	.	.	LowGQX	END=110087002	GT	./.
chr1	110091341	.	C	.	.	LowGQX	END=110091462	GT	./.
chr1	110116331	.	T	.	.	PASS	END=110116350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	110116351	.	T	.	.	PASS	END=110116417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	110116418	.	C	.	.	PASS	END=110116428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	110116429	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:48:60
chr1	110116430	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:12:60
chr1	110116516	.	A	.	.	PASS	END=110116558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	110116559	.	A	.	.	LowGQX	END=110116560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	110116561	.	T	.	.	PASS	END=110116566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	110116567	.	G	.	.	LowGQX	END=110116584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	110116585	.	A	.	.	PASS	END=110116586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	110116587	.	T	.	.	LowGQX	END=110116591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	110116592	.	A	.	.	LowGQX	END=110116607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	110116608	.	C	.	.	LowGQX	END=110116621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	110116622	.	G	.	.	LowGQX	END=110116635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	110116636	.	G	.	.	LowGQX	END=110116661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	110121824	.	A	.	.	LowGQX	END=110121975	GT	./.
chr1	110121976	.	G	.	.	LowGQX	END=110121985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110125057	.	A	.	.	LowGQX	END=110125189	GT	./.
chr1	110128836	.	A	.	.	LowGQX	END=110128866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110128867	.	A	.	.	LowGQX	.	GT	./.
chr1	110128868	.	A	.	.	LowGQX	END=110128873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110128874	.	A	.	.	LowGQX	.	GT	./.
chr1	110128875	.	A	.	.	LowGQX	END=110128904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110128905	.	G	.	.	LowGQX	.	GT	./.
chr1	110128906	.	C	.	.	LowGQX	END=110128909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110128910	.	T	.	.	LowGQX	.	GT	./.
chr1	110128911	.	A	.	.	LowGQX	END=110128922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110128923	.	G	.	.	LowGQX	.	GT	./.
chr1	110128924	.	C	.	.	LowGQX	END=110128926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110128927	.	T	.	.	LowGQX	.	GT	./.
chr1	110128928	.	C	.	.	LowGQX	END=110128934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110128935	.	T	.	.	LowGQX	.	GT	./.
chr1	110128936	.	A	.	.	LowGQX	END=110128940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110128941	.	C	.	.	LowGQX	END=110128942	GT	./.
chr1	110128943	.	T	.	.	LowGQX	END=110128969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110129349	.	A	.	.	LowGQX	END=110129558	GT	./.
chr1	110134663	.	A	.	.	LowGQX	END=110134857	GT	./.
chr1	110141503	.	C	.	.	LowGQX	END=110141514	GT	./.
chr1	110141515	.	G	.	.	LowGQX	END=110141535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110141536	.	C	.	.	LowGQX	.	GT	./.
chr1	110141537	.	A	.	.	LowGQX	END=110141538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110141539	.	T	.	.	LowGQX	.	GT	./.
chr1	110141540	.	G	.	.	LowGQX	END=110141548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110141549	.	G	.	.	LowGQX	.	GT	./.
chr1	110141550	.	A	.	.	LowGQX	END=110141567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110141568	.	A	.	.	LowGQX	.	GT	./.
chr1	110141569	.	C	.	.	LowGQX	END=110141580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110141581	.	A	.	.	LowGQX	.	GT	./.
chr1	110141582	.	G	.	.	LowGQX	END=110141584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110141585	.	T	.	.	LowGQX	.	GT	./.
chr1	110141586	.	G	.	.	LowGQX	END=110141602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110145925	.	A	.	.	PASS	END=110145939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	110145940	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:27:60
chr1	110145941	.	T	.	.	PASS	END=110145945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	110145946	.	A	.	.	PASS	END=110145968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	110145969	.	G	.	.	PASS	END=110145985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	110145986	.	C	.	.	PASS	END=110146016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	110146017	.	T	.	.	PASS	END=110146058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	110146059	.	C	.	.	PASS	END=110146166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	110146167	.	C	.	.	PASS	END=110146208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	110146209	.	C	.	.	PASS	END=110146217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	110146522	.	G	.	.	PASS	END=110146549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	110146550	.	T	.	.	PASS	END=110146567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	110146568	.	C	.	.	PASS	END=110146662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	110146663	.	T	.	.	PASS	END=110146712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	110146713	.	T	.	.	PASS	END=110146777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	110148541	.	T	.	.	PASS	END=110148551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	110148552	.	A	.	.	PASS	END=110148555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	110148556	.	G	.	.	PASS	END=110148588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	110148589	.	C	.	.	PASS	END=110148601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	110148602	.	T	.	.	PASS	END=110148618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	110148619	.	A	.	.	PASS	END=110148631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	110148632	.	A	.	.	PASS	END=110148756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	110148757	.	C	.	.	PASS	END=110148772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	110148879	.	T	.	.	PASS	END=110148909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	110148910	.	C	.	.	PASS	END=110148973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	110148974	.	C	T	873.82	PASS	BaseQRankSum=-1.889;DP=97;Dels=0.00;FS=5.821;HRun=0;HaplotypeScore=15.2035;MQ=60;MQ0=0;MQRankSum=0.778;QD=9.01;ReadPosRankSum=0.793;SB=-278.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:55,41:97:99:904,0,1495:60:99:0.427
chr1	110148975	.	G	.	.	PASS	END=110149017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	110149018	.	G	.	.	PASS	END=110149035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	110149036	.	T	.	.	PASS	END=110149047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	110149048	.	G	.	.	PASS	END=110149058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	110149059	.	C	.	.	PASS	END=110149067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	110149068	.	A	.	.	PASS	END=110149069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	110149070	.	T	.	.	PASS	END=110149091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	110149092	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:54:60
chr1	110149093	.	T	.	.	PASS	END=110149096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	110149097	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:32:60
chr1	110149098	.	A	.	.	PASS	END=110149109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	110151202	.	G	.	.	PASS	END=110151234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	110151235	.	C	.	.	PASS	END=110151265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	110151266	.	C	.	.	PASS	END=110151365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	110151366	.	C	.	.	PASS	END=110151395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	110151396	.	C	.	.	PASS	END=110151417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	110151418	.	G	.	.	PASS	END=110151439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	110151440	.	C	.	.	PASS	END=110151461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	110152611	.	C	.	.	PASS	END=110152632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	110152633	.	C	.	.	PASS	END=110152640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	110152641	.	C	.	.	PASS	END=110152651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	110152652	.	A	.	.	PASS	END=110152653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	110152654	.	T	.	.	PASS	END=110152660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	110152661	.	C	.	.	PASS	END=110152677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	110152678	.	G	.	.	PASS	END=110152693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	110152694	.	G	.	.	PASS	END=110152737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	110152738	.	T	.	.	PASS	END=110152814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	110152815	.	A	.	.	PASS	END=110152832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	110152833	.	T	.	.	PASS	END=110152854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	110153028	.	C	.	.	PASS	END=110153129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	110153130	.	C	.	.	PASS	END=110153178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	110153179	.	C	.	.	PASS	END=110153180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	110155324	.	A	.	.	PASS	END=110155364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:81:60
chr1	110155365	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:64:73:60
chr1	110155366	.	C	.	.	PASS	END=110155367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	110155368	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:70:60
chr1	110155369	.	A	.	.	PASS	END=110155449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:81:60
chr1	110155450	.	T	.	.	PASS	END=110155474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	110155475	.	A	.	.	PASS	END=110155483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	110155484	.	A	.	.	PASS	END=110155508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr1	110155509	.	G	.	.	PASS	END=110155512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:60:60
chr1	110155513	.	T	.	.	PASS	END=110155515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	110155516	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:45:60
chr1	110155517	.	A	.	.	PASS	END=110155527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	110155528	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:45:60
chr1	110155529	.	C	.	.	PASS	END=110155543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	110162786	.	G	.	.	LowGQX	END=110162798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110162799	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110162800	.	C	.	.	LowGQX	END=110162809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110162810	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110162811	.	T	.	.	LowGQX	END=110162907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110162908	.	T	.	.	LowGQX	.	GT	./.
chr1	110162909	.	G	.	.	LowGQX	END=110162945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110163634	.	A	.	.	LowGQX	END=110163930	GT	./.
chr1	110163931	.	G	.	.	LowGQX	END=110163961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110163962	.	C	.	.	LowGQX	.	GT	./.
chr1	110163963	.	C	.	.	LowGQX	END=110163966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110163967	.	A	.	.	LowGQX	.	GT	./.
chr1	110163968	.	G	.	.	LowGQX	END=110163992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110163993	.	T	.	.	LowGQX	.	GT	./.
chr1	110163994	.	C	.	.	LowGQX	END=110164016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110164017	.	T	.	.	LowGQX	.	GT	./.
chr1	110164018	.	C	.	.	LowGQX	END=110164030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110164031	.	A	.	.	LowGQX	.	GT	./.
chr1	110164032	.	G	.	.	LowGQX	END=110164033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110164034	.	C	.	.	LowGQX	.	GT	./.
chr1	110164035	.	G	.	.	LowGQX	END=110164041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110164042	.	A	.	.	LowGQX	.	GT	./.
chr1	110164043	.	A	.	.	LowGQX	END=110164044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110164807	.	A	.	.	LowGQX	END=110164940	GT	./.
chr1	110167923	.	A	.	.	LowGQX	END=110168057	GT	./.
chr1	110168255	.	C	.	.	LowGQX	END=110168416	GT	./.
chr1	110168767	.	C	.	.	LowGQX	.	GT	./.
chr1	110168768	.	C	.	.	LowGQX	END=110168827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110168828	.	A	.	.	LowGQX	.	GT	./.
chr1	110168829	.	C	.	.	LowGQX	END=110168844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110168845	.	C	.	.	LowGQX	.	GT	./.
chr1	110168846	.	C	.	.	LowGQX	END=110168856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110168857	.	A	.	.	LowGQX	.	GT	./.
chr1	110168858	.	G	.	.	LowGQX	END=110168861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110168862	.	A	.	.	LowGQX	.	GT	./.
chr1	110168863	.	G	.	.	LowGQX	END=110168866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110168939	.	A	.	.	LowGQX	END=110169051	GT	./.
chr1	110169052	.	A	.	.	LowGQX	END=110169056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110169057	.	T	.	.	LowGQX	.	GT	./.
chr1	110169058	.	G	.	.	LowGQX	END=110169071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110169072	.	G	.	.	LowGQX	.	GT	./.
chr1	110169073	.	T	.	.	LowGQX	END=110169081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110169082	.	A	.	.	LowGQX	.	GT	./.
chr1	110169083	.	T	.	.	LowGQX	END=110169087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110169088	.	T	.	.	LowGQX	END=110169092	GT	./.
chr1	110169093	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110169094	.	T	.	.	LowGQX	.	GT	./.
chr1	110169095	.	T	.	.	LowGQX	END=110169098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110169346	.	A	.	.	LowGQX	END=110169509	GT	./.
chr1	110169510	.	G	.	.	LowGQX	END=110169536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110169748	.	G	.	.	LowGQX	END=110169749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110169750	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110169751	.	G	.	.	LowGQX	END=110169753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110169754	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110169755	.	T	.	.	LowGQX	END=110169758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110169759	.	A	.	.	LowGQX	.	GT	./.
chr1	110169760	.	G	.	.	LowGQX	END=110169761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110169762	.	G	.	.	LowGQX	.	GT	./.
chr1	110169763	.	C	.	.	LowGQX	END=110169768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110169769	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110169770	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110169771	.	T	.	.	LowGQX	END=110169772	GT	./.
chr1	110169773	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110169774	.	C	.	.	LowGQX	END=110169784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110169785	.	T	.	.	LowGQX	.	GT	./.
chr1	110169786	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110169787	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110169788	.	C	.	.	LowGQX	END=110169793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110169794	.	C	.	.	LowGQX	.	GT	./.
chr1	110169795	.	A	.	.	LowGQX	END=110169796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110169797	.	A	.	.	LowGQX	.	GT	./.
chr1	110169798	.	T	.	.	LowGQX	END=110169805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110169806	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110169807	.	G	.	.	LowGQX	END=110169808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110169809	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110169810	.	C	.	.	LowGQX	END=110169822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110169823	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110169824	.	A	.	.	LowGQX	END=110169827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110169828	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110169829	.	C	.	.	LowGQX	END=110169836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110169837	.	T	.	.	LowGQX	.	GT	./.
chr1	110169838	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110169839	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110169840	.	G	.	.	LowGQX	END=110169852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110169853	.	A	.	.	LowGQX	.	GT	./.
chr1	110169854	.	G	.	.	LowGQX	END=110169855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110169856	.	A	.	.	LowGQX	.	GT	./.
chr1	110169857	.	C	.	.	LowGQX	END=110169860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110169861	.	G	.	.	LowGQX	.	GT	./.
chr1	110169862	.	C	.	.	LowGQX	END=110169877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110169878	.	T	.	.	LowGQX	.	GT	./.
chr1	110169879	.	G	.	.	LowGQX	END=110169881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110169882	.	T	.	.	LowGQX	END=110169940	GT	./.
chr1	110170046	.	G	.	.	LowGQX	END=110170145	GT	./.
chr1	110170394	.	A	.	.	LowGQX	END=110170407	GT	./.
chr1	110170408	.	C	.	.	LowGQX	END=110170423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110170424	.	T	.	.	LowGQX	.	GT	./.
chr1	110170425	.	A	.	.	LowGQX	END=110170439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110170440	.	T	.	.	LowGQX	END=110170441	GT	./.
chr1	110170442	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110170443	.	A	.	.	LowGQX	.	GT	./.
chr1	110170444	.	G	.	.	LowGQX	END=110170448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110170449	.	A	.	.	LowGQX	END=110170450	GT	./.
chr1	110170451	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110170452	.	T	.	.	LowGQX	.	GT	./.
chr1	110170453	.	G	.	.	LowGQX	END=110170467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110170468	.	G	.	.	LowGQX	.	GT	./.
chr1	110170469	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110170470	.	A	.	.	LowGQX	.	GT	./.
chr1	110170471	.	G	.	.	LowGQX	END=110170476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110170477	.	G	.	.	LowGQX	END=110170486	GT	./.
chr1	110170487	.	A	.	.	LowGQX	END=110170488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110170489	.	G	.	.	LowGQX	END=110170490	GT	./.
chr1	110170491	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110170492	.	A	.	.	LowGQX	END=110170494	GT	./.
chr1	110170495	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110170496	.	C	.	.	LowGQX	.	GT	./.
chr1	110170497	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110170498	.	A	.	.	LowGQX	END=110170499	GT	./.
chr1	110170500	.	A	.	.	LowGQX	END=110170501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110170502	.	C	.	.	LowGQX	.	GT	./.
chr1	110170503	.	G	.	.	LowGQX	END=110170506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110170507	.	T	.	.	LowGQX	END=110170509	GT	./.
chr1	110170510	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110170511	.	T	.	.	LowGQX	.	GT	./.
chr1	110170512	.	A	.	.	LowGQX	END=110170514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110170515	.	A	.	.	LowGQX	.	GT	./.
chr1	110170516	.	C	.	.	LowGQX	END=110170526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110170527	.	T	.	.	LowGQX	.	GT	./.
chr1	110170703	.	A	.	.	LowGQX	END=110170711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	110170712	.	C	.	.	LowGQX	END=110170718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	110170719	.	C	.	.	LowGQX	END=110170721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	110170722	.	T	.	.	LowGQX	END=110170737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	110170738	.	A	.	.	LowGQX	END=110170755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	110170756	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:12:60
chr1	110170757	.	G	.	.	LowGQX	END=110170776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	110170777	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	110170778	.	A	.	.	LowGQX	END=110170788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	110170789	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:1:60
chr1	110170790	.	A	.	.	LowGQX	END=110170792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	110170793	.	A	.	.	LowGQX	END=110170825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	110170826	.	C	.	.	LowGQX	END=110170886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	110170887	.	G	.	.	LowGQX	END=110170895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	110170896	.	T	C	44.20	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=22.10;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:75,6,0:60:6:1.000
chr1	110170897	.	G	.	.	LowGQX	END=110170901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110170984	.	A	.	.	LowGQX	END=110171119	GT	./.
chr1	110171263	.	A	.	.	LowGQX	END=110171430	GT	./.
chr1	110171729	.	A	.	.	LowGQX	END=110171859	GT	./.
chr1	110171947	.	A	.	.	LowGQX	END=110171969	GT	./.
chr1	110171970	.	G	.	.	LowGQX	END=110172042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110172043	.	A	.	.	LowGQX	.	GT	./.
chr1	110172044	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110172045	.	A	.	.	LowGQX	END=110172046	GT	./.
chr1	110172047	.	C	.	.	LowGQX	END=110172049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110172050	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110172051	.	C	.	.	LowGQX	END=110172114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110172416	.	A	.	.	LowGQX	END=110172462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110172463	.	G	.	.	LowGQX	END=110172540	GT	./.
chr1	110172853	.	A	.	.	LowGQX	END=110173061	GT	./.
chr1	110173303	.	A	.	.	LowGQX	END=110173340	GT	./.
chr1	110173341	.	G	.	.	LowGQX	END=110173417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110173563	.	A	.	.	LowGQX	END=110173776	GT	./.
chr1	110198920	.	C	.	.	PASS	END=110198929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	110198930	.	C	.	.	PASS	END=110198946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:72:60
chr1	110198947	.	C	.	.	PASS	END=110198960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	110198961	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:47:27:60
chr1	110198962	.	C	.	.	PASS	END=110198977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:78:60
chr1	110198978	.	A	.	.	PASS	END=110199021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:91:60
chr1	110199022	.	C	.	.	PASS	END=110199073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	110199074	.	G	.	.	PASS	END=110199079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	110199332	.	A	.	.	PASS	END=110199395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	110199396	.	T	.	.	PASS	END=110199419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	110199420	.	C	.	.	PASS	END=110199438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	110199439	.	C	.	.	PASS	END=110199461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	110199462	.	A	.	.	PASS	END=110199487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	110199488	.	T	.	.	PASS	END=110199515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	110199516	.	T	.	.	PASS	END=110199545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	110199546	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:99:60
chr1	110199820	.	C	.	.	PASS	END=110199859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:59
chr1	110199860	.	T	.	.	PASS	END=110199919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:59
chr1	110200157	.	G	.	.	PASS	END=110200200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	110200201	.	C	.	.	PASS	END=110200244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	110200245	.	A	.	.	PASS	END=110200295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	110200392	.	A	.	.	PASS	END=110200452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	110200453	.	G	.	.	PASS	END=110200496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	110201434	.	A	.	.	PASS	END=110201477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	110201478	.	A	.	.	PASS	END=110201533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	110201620	.	A	.	.	PASS	END=110201698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:57
chr1	110201699	.	T	C	1813.12	PASS	BaseQRankSum=-0.450;DP=157;Dels=0.00;FS=3.898;HRun=2;HaplotypeScore=7.5754;MQ=57;MQ0=2;MQRankSum=-0.967;QD=11.55;ReadPosRankSum=-0.605;SB=-1000.90	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:78,78:157:99:1843,0,1954:57:99:0.500
chr1	110201700	.	C	.	.	PASS	END=110201761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:57
chr1	110201762	.	T	.	.	PASS	END=110201799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:56
chr1	110201800	.	A	.	.	PASS	END=110201808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:58
chr1	110201809	.	G	T	1111.85	PASS	BaseQRankSum=0.325;DP=76;Dels=0.00;FS=8.985;HRun=0;HaplotypeScore=3.8399;MQ=58;MQ0=0;MQRankSum=-2.725;QD=14.63;ReadPosRankSum=0.472;SB=-240.20	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,43:76:99:1142,0,948:58:99:0.566
chr1	110201810	.	C	.	.	PASS	END=110201811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:59
chr1	110201812	.	A	G	1125.11	PASS	BaseQRankSum=1.156;DP=64;Dels=0.00;FS=6.143;HRun=0;HaplotypeScore=1.9461;MQ=59;MQ0=0;MQRankSum=0.537;QD=17.58;ReadPosRankSum=-0.853;SB=-202.09	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:25,39:64:99:1155,0,717:59:99:0.609
chr1	110201813	.	C	.	.	PASS	END=110201849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:59
chr1	110201850	.	A	.	.	PASS	END=110201871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	110201872	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:48:60
chr1	110201873	.	A	.	.	PASS	END=110201880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	110201881	.	T	.	.	PASS	END=110201893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:75:60
chr1	110201894	.	T	.	.	PASS	END=110201897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	110203782	.	C	.	.	PASS	END=110203807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:57
chr1	110203808	.	T	.	.	PASS	END=110203878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:58
chr1	110203879	.	C	.	.	PASS	END=110203881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	110207594	.	C	.	.	PASS	END=110207670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	110207671	.	C	.	.	PASS	END=110207689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	110207690	.	G	.	.	PASS	END=110207691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:96:60
chr1	110207692	.	T	.	.	PASS	END=110207693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	110210646	.	C	.	.	PASS	END=110210655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	110210656	.	C	.	.	PASS	END=110210658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	110210659	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:51:60
chr1	110210660	.	T	.	.	PASS	END=110210661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:66:60
chr1	110210662	.	C	.	.	PASS	END=110210677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	110210678	.	C	.	.	PASS	END=110210697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr1	110210698	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:63:60
chr1	110210699	.	C	.	.	PASS	END=110210707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	110210708	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:75:60
chr1	110210709	.	T	.	.	PASS	END=110210754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	110210755	.	G	.	.	PASS	END=110210779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	110210780	.	C	G	1810.17	PASS	DP=62;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.6815;MQ=60;MQ0=0;QD=29.20;SB=-569.22	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,61:62:99:1843,141,0:60:99:1.000
chr1	110210781	.	A	.	.	PASS	END=110210799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	110210800	.	G	.	.	PASS	END=110210805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	110211035	.	C	.	.	PASS	END=110211134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	110211530	.	C	.	.	PASS	END=110211548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:56
chr1	110211549	.	C	.	.	PASS	END=110211629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:50
chr1	110211903	.	T	.	.	PASS	END=110211973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:53
chr1	110211974	.	T	.	.	PASS	END=110211996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:59
chr1	110211997	.	A	.	.	PASS	END=110212002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	110212091	.	A	.	.	PASS	END=110212151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	110212152	.	A	.	.	PASS	END=110212161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:54:60
chr1	110212162	.	A	.	.	PASS	END=110212164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	110212165	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	110212166	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	110212167	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	110212168	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	110212169	.	C	.	.	LowGQX	END=110212179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	110212180	.	A	.	.	LowGQX	END=110212184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	110212185	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	110212186	.	C	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	110212187	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	110212188	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	110212189	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	110212190	.	T	.	.	LowGQX	END=110212191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	110212192	.	T	.	.	LowGQX	END=110212195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	110213907	.	A	.	.	LowGQX	END=110213949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110213950	.	G	.	.	LowGQX	.	GT	./.
chr1	110213951	.	C	.	.	LowGQX	END=110214006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110214093	.	A	.	.	LowGQX	END=110214178	GT	./.
chr1	110214179	.	C	.	.	LowGQX	END=110214207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110215782	.	G	.	.	LowGQX	END=110215881	GT	./.
chr1	110217364	.	C	.	.	PASS	END=110217390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:47
chr1	110217391	.	A	.	.	PASS	END=110217469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:246:99:44
chr1	110217470	.	C	.	.	PASS	END=110217503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:41
chr1	110217504	.	T	.	.	PASS	END=110217515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:40
chr1	110224385	.	A	.	.	LowGQX	END=110224484	GT	./.
chr1	110230404	.	A	.	.	LowGQX	END=110230563	GT	./.
chr1	110230729	.	C	.	.	LowGQX	END=110230879	GT	./.
chr1	110231218	.	G	.	.	LowGQX	END=110231312	GT	./.
chr1	110231313	.	G	.	.	LowGQX;LowMQ	END=110231372	GT	./.
chr1	110231373	.	A	.	.	LowGQX	END=110231377	GT	./.
chr1	110231581	.	C	.	.	LowGQX	END=110231753	GT	./.
chr1	110231845	.	A	.	.	LowGQX	END=110232003	GT	./.
chr1	110232891	.	A	.	.	LowGQX	END=110232896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110232897	.	A	.	.	LowGQX	.	GT	./.
chr1	110232898	.	A	.	.	LowGQX	END=110232911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110232912	.	A	.	.	LowGQX	.	GT	./.
chr1	110232913	.	C	.	.	LowGQX	END=110232927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110232928	.	T	.	.	LowGQX	.	GT	./.
chr1	110232929	.	G	.	.	LowGQX	END=110232933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110232934	.	G	.	.	LowGQX	END=110232935	GT	./.
chr1	110232936	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110232937	.	A	.	.	LowGQX	.	GT	./.
chr1	110232938	.	A	.	.	LowGQX	END=110232943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110232944	.	T	.	.	LowGQX	.	GT	./.
chr1	110232945	.	A	.	.	LowGQX	END=110232957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110232958	.	G	.	.	LowGQX	.	GT	./.
chr1	110232959	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110232960	.	G	.	.	LowGQX	END=110232961	GT	./.
chr1	110232962	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110232963	.	A	.	.	LowGQX	.	GT	./.
chr1	110232964	.	G	.	.	LowGQX	END=110232965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110232966	.	G	.	.	LowGQX	END=110232967	GT	./.
chr1	110232968	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110232969	.	C	.	.	LowGQX	.	GT	./.
chr1	110232970	.	A	.	.	LowGQX	END=110232984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110232985	.	C	.	.	LowGQX	END=110233001	GT	./.
chr1	110233002	.	G	.	.	LowGQX	END=110233021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110233022	.	T	.	.	LowGQX	.	GT	./.
chr1	110233023	.	T	.	.	LowGQX	END=110233055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110233056	.	A	.	.	LowGQX	.	GT	./.
chr1	110233057	.	T	.	.	LowGQX	END=110233060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110233061	.	C	.	.	LowGQX	.	GT	./.
chr1	110233062	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110233063	.	T	.	.	LowGQX	.	GT	./.
chr1	110233064	.	G	.	.	LowGQX	END=110233066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110233067	.	C	.	.	LowGQX	.	GT	./.
chr1	110233068	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110233069	.	T	.	.	LowGQX	.	GT	./.
chr1	110233070	.	C	.	.	LowGQX	END=110233075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110233076	.	A	.	.	LowGQX	.	GT	./.
chr1	110233077	.	T	.	.	LowGQX	END=110233087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110233088	.	G	.	.	LowGQX	END=110233089	GT	./.
chr1	110233090	.	T	.	.	LowGQX	END=110233094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110233095	.	T	.	.	LowGQX	.	GT	./.
chr1	110233096	.	C	.	.	LowGQX	END=110233101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110233102	.	T	.	.	LowGQX	.	GT	./.
chr1	110233103	.	G	.	.	LowGQX	END=110233106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110233107	.	T	.	.	LowGQX	.	GT	./.
chr1	110233108	.	C	.	.	LowGQX	END=110233116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110233117	.	C	.	.	LowGQX	.	GT	./.
chr1	110233118	.	C	.	.	LowGQX	END=110233137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr1	110233138	.	G	C	9.30	LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=54;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=0.736;SB=-30.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:30.11:39,0,30:54:9:0.667
chr1	110233139	.	T	.	.	LowGQX	END=110233146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:54
chr1	110233147	.	C	.	33	LowGQX	DP=3;MQ=54;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:54:3
chr1	110233148	.	G	.	.	LowGQX	END=110233154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:51
chr1	110233155	.	C	.	.	LowGQX	.	GT	./.
chr1	110233156	.	A	.	.	LowGQX	END=110233173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:51
chr1	110233174	.	C	.	.	LowGQX	.	GT	./.
chr1	110233175	.	T	.	.	LowGQX	END=110233188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:51
chr1	110235823	.	C	.	.	LowGQX;LowMQ	END=110235879	GT	./.
chr1	110235880	.	C	.	.	LowGQX	END=110235899	GT	./.
chr1	110235900	.	G	.	.	LowGQX;LowMQ	END=110235974	GT	./.
chr1	110251101	.	A	.	.	LowGQX	END=110251122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110251123	.	G	.	.	LowGQX	.	GT	./.
chr1	110251124	.	A	.	.	LowGQX	END=110251131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110251132	.	A	.	.	LowGQX	END=110251200	GT	./.
chr1	110254843	.	C	.	.	PASS	END=110254845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	110254846	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr1	110254847	.	A	.	.	PASS	END=110254953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr1	110254954	.	A	.	.	PASS	END=110254971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	110254972	.	T	.	.	PASS	END=110254973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	110254974	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:72:60
chr1	110254975	.	G	.	.	PASS	END=110254981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	110254982	.	T	.	.	PASS	END=110254989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	110254990	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:51:60
chr1	110254991	.	G	.	.	PASS	END=110254993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:59
chr1	110254994	.	T	.	69.12	PASS	DP=25;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:19:25:39.13:59:39
chr1	110254995	.	G	.	.	PASS	END=110254998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:59
chr1	110254999	.	C	.	.	PASS	END=110255001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:59
chr1	110255002	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:63:59
chr1	110255228	.	C	.	.	PASS	END=110255301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	110255302	.	C	.	.	PASS	END=110255327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	110255724	.	C	.	.	PASS	END=110255742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:59
chr1	110255743	.	C	.	.	PASS	END=110255795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:55
chr1	110255796	.	C	.	.	PASS	END=110255823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:52
chr1	110256048	.	G	.	.	PASS	END=110256112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:55
chr1	110256113	.	A	.	.	PASS	END=110256189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:59
chr1	110256281	.	A	.	.	PASS	END=110256327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	110256328	.	A	.	.	PASS	END=110256343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	110256344	.	C	G	1792.07	PASS	BaseQRankSum=0.424;DP=122;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=20.0286;MQ=60;MQ0=0;MQRankSum=-0.361;QD=14.69;ReadPosRankSum=1.463;SB=-247.82	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:56,65:122:99:1822,0,1397:60:99:0.537
chr1	110256345	.	C	.	.	PASS	END=110256363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	110256364	.	T	.	.	PASS	END=110256373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	110256374	.	C	.	.	PASS	END=110256385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	110257567	.	A	.	.	PASS	END=110257615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	110257616	.	G	.	.	PASS	END=110257666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	110257750	.	A	.	.	PASS	END=110257791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	110257792	.	T	.	.	PASS	END=110257808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	110257809	.	C	.	.	PASS	END=110257836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	110257837	.	T	.	.	PASS	END=110257871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	110257872	.	C	.	.	PASS	END=110257887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	110257888	.	T	.	.	PASS	END=110257920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	110257921	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:62:60
chr1	110257922	.	G	.	.	PASS	END=110257923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr1	110257924	.	T	.	.	PASS	END=110257931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	110257932	.	T	.	.	PASS	END=110257939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:59
chr1	110257940	.	C	.	.	PASS	END=110257946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:59
chr1	110257947	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:18:59
chr1	110257948	.	A	.	.	PASS	END=110257954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:59
chr1	110257955	.	C	.	.	PASS	END=110257967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:59
chr1	110257968	.	A	.	.	PASS	END=110257977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	110257978	.	T	.	.	PASS	END=110257981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	110257982	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	110257983	.	C	.	.	PASS	END=110257996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	110257997	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	110257998	.	A	.	.	PASS	END=110258010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	110258011	.	T	.	.	LowGQX	END=110258027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	110259954	.	C	.	.	LowGQX	END=110259960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	110259961	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	110259962	.	T	.	.	LowGQX	END=110259978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	110259979	.	C	.	.	LowGQX	END=110260039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	110260040	.	A	G	28.84	LowGQX	BaseQRankSum=-0.358;DP=5;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.358;QD=5.77;ReadPosRankSum=1.231;SB=-22.53	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,2:5:58.83:59,0,64:60:29:0.400
chr1	110260041	.	G	.	.	LowGQX	END=110260051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	110260052	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	110260053	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	110279691	.	G	.	.	PASS	END=110279700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	110279701	.	C	T	1468.55	PASS	BaseQRankSum=0.783;DP=107;Dels=0.00;FS=0.760;HRun=0;HaplotypeScore=3.8404;MQ=60;MQ0=0;MQRankSum=-0.745;QD=13.72;ReadPosRankSum=-1.681;SB=-626.75	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:51,56:107:99:1499,0,1296:60:99:0.523
chr1	110279702	.	A	.	.	PASS	END=110279723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	110279724	.	A	.	.	PASS	END=110279793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	110280001	.	A	.	.	PASS	END=110280018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	110280019	.	C	.	.	PASS	END=110280058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	110280059	.	A	.	.	PASS	END=110280136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	110280137	.	A	.	.	PASS	END=110280167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	110280168	.	T	.	.	PASS	END=110280191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	110280276	.	A	.	.	PASS	END=110280320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	110280321	.	A	.	.	PASS	END=110280373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	110280374	.	C	.	.	PASS	END=110280375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	110280711	.	A	.	.	PASS	END=110280721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	110280722	.	G	.	.	PASS	END=110280741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	110280742	.	G	.	.	PASS	END=110280815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	110280898	.	C	.	.	PASS	END=110280997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	110282034	.	C	.	.	PASS	END=110282051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	110282052	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:76:60
chr1	110282053	.	T	.	.	PASS	END=110282125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr1	110282126	.	C	.	.	PASS	END=110282133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	110282443	.	G	.	.	PASS	END=110282447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	110282448	.	G	.	.	PASS	END=110282466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	110282467	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:72:60
chr1	110282468	.	G	.	.	PASS	END=110282539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:60
chr1	110282540	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:65:60
chr1	110282541	.	C	.	.	PASS	END=110282542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	110282809	.	T	.	.	PASS	END=110282845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	110282846	.	T	.	.	PASS	END=110282912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	110282913	.	G	.	.	PASS	END=110282943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	110282944	.	A	.	.	PASS	END=110282971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	110282972	.	G	T	730.67	PASS	BaseQRankSum=3.226;DP=75;Dels=0.00;FS=1.016;HRun=0;HaplotypeScore=11.5208;MQ=60;MQ0=0;MQRankSum=0.898;QD=9.74;ReadPosRankSum=-0.082;SB=-244.98	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:46,29:75:99:761,0,1024:60:99:0.387
chr1	110282973	.	A	.	.	PASS	END=110282976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	110292969	.	T	.	.	LowGQX	END=110293068	GT	./.
chr1	110293280	.	A	.	.	LowGQX	END=110293416	GT	./.
chr1	110293887	.	G	.	.	LowGQX	END=110293986	GT	./.
chr1	110294243	.	T	.	.	LowGQX	END=110294261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110294262	.	A	.	.	LowGQX	END=110294345	GT	./.
chr1	110294346	.	T	.	.	LowGQX	END=110294406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110294615	.	A	.	.	LowGQX	END=110294709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110294710	.	T	.	.	LowGQX	.	GT	./.
chr1	110294711	.	T	.	.	LowGQX	END=110294726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110294727	.	T	.	.	LowGQX	.	GT	./.
chr1	110294728	.	G	.	.	LowGQX	END=110294733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110294734	.	G	.	.	LowGQX	END=110294735	GT	./.
chr1	110294736	.	G	.	.	LowGQX	END=110294752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110294753	.	T	.	.	LowGQX	.	GT	./.
chr1	110294754	.	C	.	.	LowGQX	END=110294761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110294762	.	T	.	.	LowGQX	END=110294817	GT	./.
chr1	110295276	.	A	.	.	LowGQX	.	GT	./.
chr1	110295277	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110295278	.	C	.	.	LowGQX	.	GT	./.
chr1	110295279	.	A	.	.	LowGQX	END=110295296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110295297	.	T	.	.	LowGQX	END=110295298	GT	./.
chr1	110295299	.	A	.	.	LowGQX	END=110295301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110295302	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110295303	.	C	.	.	LowGQX	END=110295322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110295323	.	T	.	.	LowGQX	.	GT	./.
chr1	110295324	.	C	.	.	LowGQX	END=110295337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110295338	.	G	.	.	LowGQX	.	GT	./.
chr1	110295339	.	G	.	.	LowGQX	END=110295375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110295670	.	G	.	.	LowGQX	END=110295716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110295717	.	C	.	.	LowGQX	END=110295829	GT	./.
chr1	110299616	.	G	.	.	LowGQX	END=110299618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110299619	.	C	.	.	LowGQX	.	GT	./.
chr1	110299620	.	A	.	.	LowGQX	END=110299638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110299639	.	C	.	.	LowGQX	.	GT	./.
chr1	110299640	.	G	.	.	LowGQX	END=110299657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110299658	.	G	.	.	LowGQX	.	GT	./.
chr1	110299659	.	G	.	.	LowGQX	END=110299660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110299661	.	C	.	.	LowGQX	.	GT	./.
chr1	110299662	.	C	.	.	LowGQX	END=110299671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110299672	.	C	.	.	LowGQX	.	GT	./.
chr1	110299673	.	A	.	.	LowGQX	END=110299688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110299689	.	T	.	.	LowGQX	END=110299789	GT	./.
chr1	110300091	.	C	.	.	LowGQX	END=110300122	GT	./.
chr1	110300123	.	G	.	.	LowGQX	END=110300189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110300190	.	A	.	.	LowGQX	.	GT	./.
chr1	110300405	.	C	.	.	LowGQX	END=110300504	GT	./.
chr1	110300564	.	A	.	.	LowGQX	END=110300636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	110300637	.	C	.	.	LowGQX	END=110300682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	110300896	.	G	.	.	LowGQX	END=110300951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110300952	.	G	.	.	LowGQX	.	GT	./.
chr1	110300953	.	G	.	.	LowGQX	END=110300974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110300975	.	C	.	.	LowGQX	.	GT	./.
chr1	110300976	.	T	.	.	LowGQX	END=110300982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110300983	.	A	.	.	LowGQX	END=110301077	GT	./.
chr1	110301144	.	A	.	.	LowGQX	END=110301290	GT	./.
chr1	110301662	.	G	.	.	LowGQX	END=110301761	GT	./.
chr1	110301858	.	A	.	.	LowGQX	END=110302011	GT	./.
chr1	110302298	.	A	.	.	LowGQX	END=110302366	GT	./.
chr1	110302367	.	A	.	.	LowGQX	END=110302413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110302414	.	G	.	.	LowGQX	.	GT	./.
chr1	110302415	.	G	.	.	LowGQX	END=110302460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110304100	.	G	.	.	LowGQX	END=110304199	GT	./.
chr1	110304307	.	G	.	.	LowGQX	END=110304406	GT	./.
chr1	110452970	.	C	.	.	LowGQX	END=110453069	GT	./.
chr1	110453556	.	C	.	.	PASS	END=110453562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	110453563	.	C	.	.	PASS	END=110453572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	110453573	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	110453574	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr1	110453575	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr1	110453576	.	C	.	.	PASS	END=110453577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	110453578	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr1	110453579	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	110453580	.	A	.	.	LowGQX	END=110453581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	110453582	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	110453583	.	A	.	.	LowGQX	END=110453586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	110453587	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	110453588	.	G	.	.	LowGQX	END=110453590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	110453591	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	110453592	.	G	.	.	LowGQX	END=110453593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	110453594	.	G	.	.	LowGQX	END=110453597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	110453598	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr1	110453599	.	A	.	.	LowGQX	END=110453602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	110453603	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	110453604	.	G	.	.	LowGQX	END=110453615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	110453616	.	G	.	.	LowGQX	END=110453650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	110453651	.	C	.	.	LowGQX	END=110453715	GT	./.
chr1	110456879	.	A	.	.	PASS	END=110456997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr1	110456998	.	C	.	.	PASS	END=110457005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	110458238	.	G	.	.	PASS	END=110458262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	110458263	.	G	.	.	PASS	END=110458281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	110458282	.	C	.	.	PASS	END=110458337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	110459913	.	A	.	.	PASS	END=110459930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	110459931	.	A	.	.	PASS	END=110460012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:271:99:60
chr1	110460013	.	C	.	.	PASS	END=110460081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:279:99:60
chr1	110460082	.	C	.	.	PASS	END=110460087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:256:99:60
chr1	110464467	.	A	.	.	PASS	END=110464495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	110464496	.	C	.	.	PASS	END=110464526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	110464527	.	T	.	.	PASS	END=110464612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	110464613	.	C	.	.	PASS	END=110464618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	110465786	.	A	.	.	PASS	END=110465873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	110465874	.	C	.	.	PASS	END=110465954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	110465955	.	G	.	.	PASS	END=110465975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	110465976	.	G	.	.	PASS	END=110466087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	110466088	.	C	.	.	PASS	END=110466168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	110466169	.	C	.	.	PASS	END=110466252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	110466253	.	C	.	.	PASS	END=110466337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	110466338	.	C	A	2743.22	PASS	BaseQRankSum=3.016;DP=211;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=20.0911;MQ=60;MQ0=0;MQRankSum=0.592;QD=13.00;ReadPosRankSum=-1.851;SB=-1018.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:102,108:211:99:2773,0,2521:60:99:0.514
chr1	110466339	.	G	.	.	PASS	END=110466358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	110466359	.	C	.	.	PASS	END=110466389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	110466390	.	A	.	.	PASS	END=110466403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	110466404	.	A	.	.	PASS	END=110466465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	110466466	.	T	C	1365.70	PASS	BaseQRankSum=0.162;DP=103;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=22.9319;MQ=60;MQ0=0;MQRankSum=-0.650;QD=13.26;ReadPosRankSum=1.448;SB=-713.96	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:51,52:103:99:1396,0,1386:60:99:0.505
chr1	110466467	.	G	.	.	PASS	END=110466489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	110466490	.	C	.	.	PASS	END=110466543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	110466544	.	T	.	.	PASS	END=110466672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	110466673	.	C	.	.	PASS	END=110466708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	110466709	.	T	C	7277.53	PASS	DP=239;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=20.9900;MQ=60;MQ0=0;QD=30.45;SB=-3468.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,237:239:99:7278,560,0:60:99:1.000
chr1	110466710	.	C	.	.	PASS	END=110466783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	110466784	.	G	.	.	PASS	END=110466807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	110466808	.	G	.	.	PASS	END=110466809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	110466810	.	C	A	1750.77	PASS	BaseQRankSum=0.931;DP=142;Dels=0.00;FS=10.053;HRun=0;HaplotypeScore=24.7669;MQ=60;MQ0=0;MQRankSum=-0.208;QD=12.33;ReadPosRankSum=-1.335;SB=-517.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:73,69:142:99:1781,0,1850:60:99:0.486
chr1	110466811	.	G	.	.	PASS	END=110466814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	110467375	.	G	.	.	PASS	END=110467391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	110467392	.	C	.	.	PASS	END=110467474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	110467741	.	T	.	.	PASS	END=110467744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	110467745	.	A	G	2630.52	PASS	DP=92;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.6281;MQ=60;MQ0=0;QD=28.59;SB=-1280.67	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,92:92:99:2664,202,0:60:99:1.000
chr1	110467746	.	C	.	.	PASS	END=110467765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	110467766	.	C	.	.	PASS	END=110467840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	110527673	.	G	.	.	LowGQX	END=110527842	GT	./.
chr1	110551654	.	A	.	.	LowGQX	END=110551769	GT	./.
chr1	110553834	.	A	.	.	LowGQX	END=110553851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110553852	.	T	.	.	LowGQX	END=110553959	GT	./.
chr1	110553960	.	G	.	.	LowGQX	END=110553981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110554982	.	A	.	.	LowGQX	END=110554985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110554986	.	A	.	.	LowGQX	END=110554987	GT	./.
chr1	110554988	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110554989	.	T	.	.	LowGQX	.	GT	./.
chr1	110554990	.	C	.	.	LowGQX	END=110554992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110554993	.	C	.	.	LowGQX	.	GT	./.
chr1	110554994	.	T	.	.	LowGQX	END=110554995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110554996	.	T	.	.	LowGQX	.	GT	./.
chr1	110554997	.	G	.	.	LowGQX	END=110554999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110555000	.	T	.	.	LowGQX	.	GT	./.
chr1	110555001	.	T	.	.	LowGQX	END=110555002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110555003	.	A	.	.	LowGQX	.	GT	./.
chr1	110555004	.	C	.	.	LowGQX	END=110555005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110555006	.	C	.	.	LowGQX	END=110555007	GT	./.
chr1	110555008	.	G	.	.	LowGQX	END=110555013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110555014	.	G	.	.	LowGQX	.	GT	./.
chr1	110555015	.	T	.	.	LowGQX	END=110555017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110555018	.	T	.	.	LowGQX	.	GT	./.
chr1	110555019	.	C	.	.	LowGQX	END=110555020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110555021	.	G	.	.	LowGQX	END=110555022	GT	./.
chr1	110555023	.	G	.	.	LowGQX	END=110555027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110555028	.	A	.	.	LowGQX	.	GT	./.
chr1	110555029	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110555030	.	G	.	.	LowGQX	.	GT	./.
chr1	110555031	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110555032	.	C	.	.	LowGQX	END=110555035	GT	./.
chr1	110555036	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110555037	.	G	.	.	LowGQX	.	GT	./.
chr1	110555038	.	C	.	.	LowGQX	END=110555039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110555040	.	G	.	.	LowGQX	.	GT	./.
chr1	110555041	.	G	.	.	LowGQX	END=110555043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110555044	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110555045	.	T	.	.	LowGQX	END=110555086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110555517	.	A	.	.	LowGQX	END=110555623	GT	./.
chr1	110557383	.	A	.	.	LowGQX	END=110557482	GT	./.
chr1	110558045	.	A	.	.	LowGQX	END=110558100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	110558101	.	G	A	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.66;ReadPosRankSum=-0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr1	110558102	.	T	.	.	LowGQX	END=110558151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110558152	.	A	.	.	LowGQX	.	GT	./.
chr1	110558153	.	G	.	.	LowGQX	END=110558155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110558964	.	A	.	.	LowGQX	END=110559084	GT	./.
chr1	110559271	.	C	.	.	LowGQX	END=110559370	GT	./.
chr1	110560112	.	T	.	.	LowGQX	END=110560128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110560129	.	T	.	.	LowGQX	END=110560211	GT	./.
chr1	110560554	.	T	.	.	LowGQX	END=110560653	GT	./.
chr1	110560993	.	A	.	.	LowGQX	END=110561011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110561012	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110561013	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110561014	.	A	.	.	LowGQX	.	GT	./.
chr1	110561015	.	C	.	.	LowGQX	END=110561029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110561030	.	C	.	.	LowGQX	.	GT	./.
chr1	110561031	.	G	.	.	LowGQX	END=110561073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110561074	.	C	.	.	LowGQX	.	GT	./.
chr1	110561075	.	A	.	.	LowGQX	END=110561076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110561077	.	A	.	.	LowGQX	END=110561092	GT	./.
chr1	110561172	.	A	.	.	LowGQX	END=110561274	GT	./.
chr1	110561658	.	C	.	.	LowGQX	END=110561757	GT	./.
chr1	110562160	.	C	.	.	LowGQX	END=110562229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110562230	.	T	.	.	LowGQX	END=110562259	GT	./.
chr1	110563351	.	A	.	.	LowGQX	END=110563475	GT	./.
chr1	110564250	.	C	.	.	LowGQX	END=110564256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110564257	.	A	.	.	LowGQX	.	GT	./.
chr1	110564258	.	A	.	.	LowGQX	END=110564259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110564260	.	A	.	.	LowGQX	END=110564261	GT	./.
chr1	110564262	.	A	.	.	LowGQX	END=110564263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110564264	.	A	.	.	LowGQX	.	GT	./.
chr1	110564265	.	A	.	.	LowGQX	END=110564267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110564268	.	G	.	.	LowGQX	.	GT	./.
chr1	110564269	.	T	.	.	LowGQX	END=110564271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110564272	.	A	.	.	LowGQX	.	GT	./.
chr1	110564273	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110564274	.	C	.	.	LowGQX	END=110564275	GT	./.
chr1	110564276	.	A	.	.	LowGQX	END=110564280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110564281	.	T	.	.	LowGQX	.	GT	./.
chr1	110564282	.	C	.	.	LowGQX	END=110564286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110564287	.	T	.	.	LowGQX	.	GT	./.
chr1	110564288	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110564289	.	T	.	.	LowGQX	.	GT	./.
chr1	110564290	.	T	.	.	LowGQX	END=110564291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110564292	.	A	.	.	LowGQX	END=110564293	GT	./.
chr1	110564294	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110564295	.	G	.	.	LowGQX	END=110564349	GT	./.
chr1	110577247	.	T	.	.	LowGQX	END=110577441	GT	./.
chr1	110580498	.	T	.	.	LowGQX	END=110580520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110580521	.	G	.	.	LowGQX	END=110580597	GT	./.
chr1	110581293	.	T	.	.	LowGQX	END=110581392	GT	./.
chr1	110581792	.	A	.	.	LowGQX	END=110581930	GT	./.
chr1	110582015	.	A	.	.	LowGQX	END=110582139	GT	./.
chr1	110582425	.	A	.	.	LowGQX	END=110582583	GT	./.
chr1	110583242	.	C	.	.	LowGQX	END=110583258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110583259	.	A	.	.	LowGQX	.	GT	./.
chr1	110583260	.	C	.	.	LowGQX	END=110583341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110584156	.	A	.	.	LowGQX	END=110584266	GT	./.
chr1	110584354	.	A	.	.	LowGQX	END=110584485	GT	./.
chr1	110585708	.	A	.	.	LowGQX	END=110585894	GT	./.
chr1	110586209	.	C	.	.	LowGQX	END=110586228	GT	./.
chr1	110586229	.	G	.	.	LowGQX	END=110586290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110586291	.	T	.	.	LowGQX	.	GT	./.
chr1	110586292	.	T	.	.	LowGQX	END=110586386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110586387	.	G	.	.	LowGQX	.	GT	./.
chr1	110586388	.	A	.	.	LowGQX	END=110586392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110586393	.	G	.	.	LowGQX	END=110586394	GT	./.
chr1	110586395	.	T	.	.	LowGQX	END=110586397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110586398	.	A	.	.	LowGQX	.	GT	./.
chr1	110586399	.	G	.	.	LowGQX	END=110586482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110586483	.	G	.	.	LowGQX	END=110586497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	110586498	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	110586499	.	G	.	.	LowGQX	END=110586529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	110586530	.	A	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	110586531	.	C	.	.	LowGQX	END=110586540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110586541	.	T	.	.	LowGQX	.	GT	./.
chr1	110586542	.	G	.	.	LowGQX	END=110586546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110586547	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	110586548	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110587445	.	T	.	.	LowGQX	END=110587544	GT	./.
chr1	110587619	.	G	.	.	LowGQX	END=110587670	GT	./.
chr1	110587671	.	A	.	.	LowGQX	END=110587674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110587675	.	A	.	.	LowGQX	.	GT	./.
chr1	110587676	.	C	.	.	LowGQX	END=110587690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110587691	.	T	.	.	LowGQX	.	GT	./.
chr1	110587692	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110587693	.	T	.	.	LowGQX	END=110587697	GT	./.
chr1	110587698	.	C	.	.	LowGQX	END=110587707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110587708	.	G	.	.	LowGQX	END=110587711	GT	./.
chr1	110587712	.	T	.	.	LowGQX	END=110587716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110587717	.	G	.	.	LowGQX	.	GT	./.
chr1	110587718	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110589288	.	A	.	.	LowGQX	END=110589387	GT	./.
chr1	110590152	.	T	.	.	LowGQX	END=110590251	GT	./.
chr1	110590392	.	A	.	.	LowGQX	END=110590410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110590411	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	110590412	.	C	.	.	LowGQX	END=110590493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110591732	.	A	.	.	LowGQX	END=110591862	GT	./.
chr1	110592080	.	A	.	.	LowGQX	.	GT	./.
chr1	110592081	.	G	.	.	LowGQX	END=110592084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110592085	.	G	.	.	LowGQX	.	GT	./.
chr1	110592086	.	A	.	.	LowGQX	END=110592088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110592089	.	A	.	.	LowGQX	END=110592091	GT	./.
chr1	110592092	.	T	.	.	LowGQX	END=110592093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110592094	.	G	.	.	LowGQX	END=110592103	GT	./.
chr1	110592104	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110592105	.	G	.	.	LowGQX	END=110592106	GT	./.
chr1	110592107	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110592108	.	G	.	.	LowGQX	.	GT	./.
chr1	110592109	.	T	.	.	LowGQX	END=110592111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110592112	.	G	.	.	LowGQX	END=110592121	GT	./.
chr1	110592122	.	T	.	.	LowGQX	END=110592123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110592124	.	C	.	.	LowGQX	END=110592125	GT	./.
chr1	110592126	.	T	.	.	LowGQX	END=110592128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110592129	.	G	.	.	LowGQX	.	GT	./.
chr1	110592130	.	A	.	.	LowGQX	END=110592131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110592132	.	C	.	.	LowGQX	END=110592133	GT	./.
chr1	110592134	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110592135	.	A	.	.	LowGQX	.	GT	./.
chr1	110592136	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110592137	.	A	.	.	LowGQX	.	GT	./.
chr1	110592138	.	G	.	.	LowGQX	END=110592143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110592144	.	C	.	.	LowGQX	.	GT	./.
chr1	110592145	.	A	.	.	LowGQX	END=110592147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110592148	.	C	.	.	LowGQX	END=110592149	GT	./.
chr1	110592150	.	A	.	.	LowGQX	END=110592151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110592152	.	A	.	.	LowGQX	.	GT	./.
chr1	110592153	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110592154	.	A	.	.	LowGQX	.	GT	./.
chr1	110592155	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110592156	.	C	.	.	LowGQX	END=110592157	GT	./.
chr1	110592158	.	T	.	.	LowGQX	END=110592184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110592949	.	C	.	.	LowGQX	END=110593019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110593020	.	G	.	.	LowGQX	END=110593048	GT	./.
chr1	110593576	.	A	.	.	LowGQX	END=110593624	GT	./.
chr1	110593625	.	T	.	.	LowGQX	END=110593626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110593627	.	T	.	.	LowGQX	.	GT	./.
chr1	110593628	.	C	.	.	LowGQX	END=110593661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110593662	.	T	.	.	LowGQX	.	GT	./.
chr1	110593663	.	G	.	.	LowGQX	END=110593684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110594303	.	A	.	.	LowGQX	END=110594511	GT	./.
chr1	110596285	.	A	.	.	LowGQX	END=110596536	GT	./.
chr1	110603304	.	T	.	.	PASS	END=110603339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:65
chr1	110603340	.	G	.	.	PASS	END=110603361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:64
chr1	110603362	.	G	.	.	PASS	END=110603392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:62
chr1	110603393	.	G	.	.	PASS	END=110603512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	110603513	.	C	.	.	PASS	END=110603538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	110603539	.	C	.	.	PASS	END=110603558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	110603559	.	G	.	.	PASS	END=110603573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	110603574	.	C	.	.	PASS	END=110603602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	110603603	.	A	.	.	PASS	END=110603625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	110603626	.	C	.	.	PASS	END=110603653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	110603654	.	A	.	.	PASS	END=110603655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	110603656	.	T	.	.	PASS	END=110603658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	110603659	.	T	.	.	PASS	END=110603662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	110603663	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:36:60
chr1	110603664	.	C	.	.	PASS	END=110603669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	110603670	.	A	.	.	PASS	END=110603693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	110603694	.	C	.	.	PASS	END=110603714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	110604006	.	T	.	.	PASS	END=110604042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	110604043	.	G	.	.	PASS	END=110604072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	110604073	.	G	.	.	PASS	END=110604145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	110604146	.	C	.	.	PASS	END=110604187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	110604188	.	G	.	.	PASS	END=110604203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	110604204	.	G	.	.	PASS	END=110604210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:60
chr1	110604211	.	G	.	.	PASS	END=110604215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	110604216	.	T	.	108.23	PASS	DP=66;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:50:66:78.23:59:78
chr1	110604217	.	G	.	.	PASS	END=110604233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:59
chr1	110604234	.	G	.	.	PASS	END=110604236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:59
chr1	110607158	.	T	.	.	PASS	END=110607175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	110607176	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:42:60
chr1	110607177	.	G	.	.	PASS	END=110607189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	110607190	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:20:60
chr1	110607191	.	T	.	.	PASS	END=110607205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	110607206	.	C	.	.	PASS	END=110607219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	110607220	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:51:60
chr1	110607221	.	C	.	.	PASS	END=110607228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	110607229	.	G	.	.	PASS	END=110607241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	110607242	.	G	.	.	PASS	END=110607264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	110607265	.	C	.	.	PASS	END=110607324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	110607325	.	A	.	.	PASS	END=110607378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	110607379	.	C	.	.	PASS	END=110607407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	110607408	.	A	.	.	PASS	END=110607458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:96:60
chr1	110607459	.	C	.	.	PASS	END=110607474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	110607475	.	A	.	.	PASS	END=110607484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	110607485	.	C	.	.	PASS	END=110607487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	110607488	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:39:60
chr1	110607489	.	T	.	.	PASS	END=110607513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	110607514	.	T	.	.	PASS	END=110607520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	110607521	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:27:60
chr1	110607522	.	T	.	.	PASS	END=110607543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	110607544	.	A	.	.	PASS	END=110607548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	110607549	.	A	.	.	PASS	END=110607562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	110607563	.	A	.	.	PASS	END=110607570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	110607571	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	110607572	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	110607573	.	T	.	.	PASS	END=110607574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	110607575	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	110607576	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	110612907	.	G	.	.	PASS	END=110612924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	110612925	.	G	A	1808.94	PASS	DP=69;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=26.22;SB=-761.22	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,68:69:99:1842,138,0:60:99:1.000
chr1	110612926	.	G	.	.	PASS	END=110612941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	110612942	.	C	.	.	PASS	END=110612963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	110612964	.	C	.	.	PASS	END=110612980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	110612981	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr1	110612982	.	G	.	.	PASS	END=110612989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	110612990	.	T	.	.	PASS	END=110612991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	110612992	.	G	.	.	PASS	END=110612995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	110612996	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:34:60
chr1	110612997	.	C	.	.	PASS	END=110613013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	110613014	.	T	.	.	PASS	END=110613022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	110613023	.	T	.	.	PASS	END=110613037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	110613038	.	T	.	.	PASS	END=110613039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	110613040	.	G	.	.	PASS	END=110613044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	110613045	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:6:60
chr1	110613046	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:48:60
chr1	110613047	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	110613048	.	C	.	.	PASS	END=110613055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	110613056	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr1	110613057	.	A	.	.	PASS	END=110613061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	110613062	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	110613063	.	C	.	.	PASS	END=110613064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	110613065	.	A	.	.	PASS	END=110613069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	110613070	.	C	.	.	LowGQX	END=110613074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	110613075	.	A	.	.	LowGQX	END=110613079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	110613080	.	G	.	.	LowGQX	END=110613082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	110613083	.	A	.	.	LowGQX	END=110613084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	110613085	.	G	.	.	LowGQX	END=110613086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	110613087	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	110613088	.	G	.	.	LowGQX	END=110613089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	110613090	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:12:60
chr1	110613091	.	C	.	.	LowGQX	END=110613096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	110613097	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	110613098	.	G	.	.	LowGQX	END=110613118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	110613119	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:12:60
chr1	110613120	.	G	.	.	LowGQX	END=110613124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	110613125	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:9:60
chr1	110613126	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	110613127	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	110613128	.	G	.	.	LowGQX	END=110613135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	110613136	.	G	.	.	LowGQX	END=110613137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	110613138	.	C	.	.	LowGQX	END=110613144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	110613145	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	110613146	.	C	.	.	LowGQX	END=110613148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	110613149	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	110613150	.	G	.	.	LowGQX	END=110613155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	110613156	.	C	.	.	LowGQX	END=110613162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	110613163	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr1	110613164	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	110613165	.	C	.	.	LowGQX	END=110613166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	110613167	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	110613168	.	C	.	.	LowGQX	END=110613169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	110613170	.	C	.	.	LowGQX	END=110613171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	110613172	.	C	.	.	LowGQX	END=110613174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	110613175	.	G	.	.	LowGQX	END=110613177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	110613178	.	C	.	.	LowGQX	END=110613184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	110613185	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	110613186	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr1	110613187	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	110613188	.	C	.	.	LowGQX	END=110613189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	110613190	.	G	.	.	LowGQX	END=110613191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	110613192	.	G	.	.	LowGQX	END=110613200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	110613201	.	C	.	.	LowGQX	END=110613202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	110613203	.	A	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	110613204	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	110613205	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	110613206	.	C	.	.	LowGQX	END=110613213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	110613214	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	110613215	.	G	.	.	LowGQX	END=110613217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	110613218	.	C	.	13.53	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.09:60:0
chr1	110613219	.	A	.	.	LowGQX	END=110613220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	110613221	.	T	.	.	LowGQX	END=110613223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	110613224	.	T	.	.	LowGQX	END=110613225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	110613226	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	110613227	.	G	.	.	LowGQX	END=110613229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	110613230	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	110613231	.	C	.	.	LowGQX	END=110613237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	110613238	.	G	.	.	LowGQX	END=110613285	GT	./.
chr1	110655155	.	C	.	.	LowGQX	END=110655683	GT	./.
chr1	110709550	.	C	.	.	LowGQX	END=110709576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110709577	.	A	.	.	LowGQX	END=110709813	GT	./.
chr1	110709814	.	A	.	.	LowGQX	END=110709839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110714680	.	A	.	.	LowGQX	.	GT	./.
chr1	110714681	.	G	.	.	LowGQX	END=110714702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110714703	.	T	.	.	LowGQX	.	GT	./.
chr1	110714704	.	G	.	.	LowGQX	END=110714784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110714785	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	110714786	.	G	.	.	LowGQX	END=110714834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	110714835	.	G	T	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.727;QD=0.79;ReadPosRankSum=0.727;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,1:4:30.28:30,0,75:60:3:0.250
chr1	110714836	.	C	.	.	LowGQX	END=110714841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	110716593	.	A	.	.	LowGQX	END=110716723	GT	./.
chr1	110717399	.	A	.	.	LowGQX	END=110717445	GT	./.
chr1	110717446	.	G	.	.	LowGQX	END=110717451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110717452	.	G	.	.	LowGQX	.	GT	./.
chr1	110717453	.	A	.	.	LowGQX	END=110717490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110717491	.	G	.	.	LowGQX	.	GT	./.
chr1	110717492	.	G	.	.	LowGQX	END=110717554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110717555	.	C	.	.	LowGQX	.	GT	./.
chr1	110717556	.	G	.	.	LowGQX	END=110717560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110717561	.	G	.	.	LowGQX	.	GT	./.
chr1	110717562	.	G	.	.	LowGQX	END=110717584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110719197	.	G	.	.	LowGQX	END=110719363	GT	./.
chr1	110734592	.	A	.	.	LowGQX	END=110734710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110734711	.	A	.	.	LowGQX	.	GT	./.
chr1	110734712	.	A	.	.	LowGQX	END=110734715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110734716	.	C	.	.	LowGQX	.	GT	./.
chr1	110734717	.	C	.	.	LowGQX	END=110734780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110734781	.	T	.	.	LowGQX	.	GT	./.
chr1	110734782	.	G	.	.	LowGQX	END=110734797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110734798	.	T	.	.	LowGQX	END=110734799	GT	./.
chr1	110734800	.	C	.	.	LowGQX	END=110734837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110735126	.	A	.	.	LowGQX	END=110735163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110735164	.	C	T	9.30	LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=0.736;SB=-25.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:30.11:39,0,30:60:9:0.667
chr1	110735165	.	G	.	.	LowGQX	END=110735185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	110735186	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	110735187	.	C	.	.	LowGQX	END=110735244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	110735245	.	C	.	35.50	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:5.51:60:6
chr1	110735246	.	A	.	.	LowGQX	END=110735291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110735292	.	C	.	.	LowGQX	END=110735322	GT	./.
chr1	110737199	.	A	.	.	LowGQX	END=110737467	GT	./.
chr1	110738206	.	A	.	.	LowGQX	END=110738369	GT	./.
chr1	110740057	.	A	.	.	LowGQX	END=110740223	GT	./.
chr1	110740696	.	A	.	.	LowGQX	END=110741068	GT	./.
chr1	110754120	.	T	.	.	LowGQX	END=110754124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	110754125	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	110754126	.	T	.	.	LowGQX	END=110754128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	110754129	.	G	.	.	LowGQX	END=110754133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	110754134	.	G	.	.	LowGQX	END=110754149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	110754150	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	110754151	.	C	.	.	LowGQX	END=110754159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	110754160	.	C	.	.	LowGQX	END=110754162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	110754163	.	G	.	.	LowGQX	END=110754169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	110754170	.	A	.	.	LowGQX	END=110754173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	110754174	.	A	.	.	LowGQX	END=110754181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	110754182	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	110754183	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	110754184	.	C	.	.	LowGQX	END=110754185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	110754186	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	110754187	.	A	.	.	LowGQX	END=110754188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	110754189	.	C	.	.	LowGQX	END=110754191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	110754192	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	110754193	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	110754194	.	C	.	.	LowGQX	END=110754207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	110754208	.	G	.	.	PASS	END=110754210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	110754211	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	110754212	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	110754213	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	110754214	.	G	.	.	PASS	END=110754218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	110754219	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	110754220	.	G	.	.	PASS	END=110754223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	110754224	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	110754225	.	C	.	.	PASS	END=110754226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	110754227	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	110754228	.	A	.	.	PASS	END=110754229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	110754230	.	A	.	.	LowGQX	END=110754231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	110754232	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	110754233	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	110754234	.	T	.	.	PASS	END=110754235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	110754236	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	110754237	.	T	.	.	PASS	END=110754246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	110754247	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:2:60
chr1	110754248	.	G	.	.	PASS	END=110754258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	110754259	.	A	.	.	PASS	END=110754265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	110754266	.	A	.	.	PASS	END=110754277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	110754278	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:14:60
chr1	110754279	.	C	.	.	PASS	END=110754296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	110754297	.	G	.	.	PASS	END=110754320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	110754321	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:66:60
chr1	110754322	.	C	.	.	PASS	END=110754326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:87:60
chr1	110754327	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:51:60
chr1	110754328	.	C	.	.	PASS	END=110754339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	110754340	.	G	.	.	PASS	END=110754359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	110754360	.	G	.	.	PASS	END=110754394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	110754395	.	T	.	.	PASS	END=110754443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	110754444	.	A	.	.	PASS	END=110754574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	110754575	.	C	.	.	PASS	END=110754607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	110754608	.	A	.	.	PASS	END=110754647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:87:60
chr1	110754648	.	A	.	.	PASS	END=110754682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	110754683	.	C	.	.	PASS	END=110754692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	110754693	.	C	.	.	PASS	END=110754702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	110754703	.	A	.	.	PASS	END=110754709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	110754710	.	G	.	.	PASS	END=110754724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	110754725	.	T	.	.	PASS	END=110754732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:63:60
chr1	110754733	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:57:60
chr1	110754734	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:36:60
chr1	110754735	.	G	.	.	PASS	END=110754742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	110754743	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:42:60
chr1	110754744	.	G	.	.	PASS	END=110754755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	110754756	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:48:60
chr1	110754757	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:66:60
chr1	110754758	.	T	.	.	PASS	END=110754764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	110754765	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:33:60
chr1	110754766	.	C	.	.	PASS	END=110754775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	110754776	.	C	.	.	PASS	END=110754778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	110754779	.	T	.	.	PASS	END=110754784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	110754785	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	110754786	.	C	.	.	PASS	END=110754799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	110754800	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	110754801	.	T	.	51.06	LowGQX	DP=15;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:12:15:21.06:60:21
chr1	110754802	.	G	.	.	PASS	END=110754803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:59
chr1	110754804	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:3:59
chr1	110754805	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:18:59
chr1	110754806	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:59
chr1	110754807	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:0:59
chr1	110765584	.	A	.	.	LowGQX	END=110765675	GT	./.
chr1	110765676	.	G	.	.	LowGQX	END=110765708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110765709	.	A	.	.	LowGQX	END=110765762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	110765763	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	110765764	.	G	.	.	LowGQX	END=110765771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	110765772	.	G	.	.	LowGQX	END=110765785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	110765786	.	A	.	.	LowGQX	END=110765787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	110765788	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	110765789	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	110765790	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	110765791	.	A	.	.	LowGQX	END=110765803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	110765804	.	C	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	110765805	.	A	.	.	LowGQX	END=110765815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	110765816	.	C	.	.	LowGQX	END=110765818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	110765819	.	C	.	.	LowGQX	END=110765820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	110765821	.	A	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	110765822	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:60
chr1	110765823	.	A	.	.	LowGQX	END=110765824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	110765825	.	G	.	.	LowGQX	END=110765845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	110765846	.	G	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	110765847	.	C	.	.	LowGQX	END=110765849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	110765850	.	A	.	.	LowGQX	END=110765852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	110765853	.	A	.	.	LowGQX	END=110765859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	110765860	.	A	.	.	LowGQX	END=110765877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	110765878	.	C	.	.	LowGQX	END=110765912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	110765913	.	T	.	.	LowGQX	END=110765956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	110765957	.	C	.	.	LowGQX	END=110765966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	110765967	.	A	.	.	LowGQX	END=110765968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	110765969	.	C	.	.	LowGQX	END=110765978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	110765979	.	T	.	.	LowGQX	END=110765989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	110765990	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	110765991	.	C	.	.	LowGQX	END=110765994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	110765995	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	110765996	.	C	.	.	LowGQX	END=110766008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	110766009	.	C	.	.	LowGQX	END=110766014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	110766015	.	C	.	.	LowGQX	END=110766018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	110766019	.	G	.	.	LowGQX	END=110766023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	110766024	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	110766025	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:60
chr1	110766026	.	C	.	.	LowGQX	END=110766035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	110766036	.	A	.	.	LowGQX	END=110766038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	110766039	.	A	.	36	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.01:60:6
chr1	110766040	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	110766041	.	C	.	.	LowGQX	END=110766042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	110766043	.	A	.	.	LowGQX	END=110766046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	110766047	.	G	.	.	LowGQX	END=110766059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	110766060	.	A	.	.	LowGQX	END=110766061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	110766062	.	C	.	.	LowGQX	END=110766066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	110766067	.	T	.	.	LowGQX	END=110766068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	110766069	.	C	.	.	LowGQX	END=110766071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	110766072	.	G	.	.	LowGQX	END=110766076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	110766077	.	G	.	.	PASS	END=110766078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	110766079	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:1:60
chr1	110766080	.	T	.	.	PASS	END=110766100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	110766101	.	G	.	.	PASS	END=110766103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	110766104	.	C	.	.	PASS	END=110766130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	110766131	.	G	.	.	PASS	END=110766138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	110766139	.	A	.	.	PASS	END=110766140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	110766141	.	C	.	.	PASS	END=110766153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	110766154	.	A	.	.	PASS	END=110766157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	110766158	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:81:60
chr1	110766159	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:54:60
chr1	110766160	.	C	.	.	PASS	END=110766162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	110766163	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:60:60
chr1	110766164	.	C	.	.	PASS	END=110766173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	110766174	.	A	.	.	PASS	END=110766176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	110766177	.	C	.	.	PASS	END=110766203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	110766204	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:57:60
chr1	110766205	.	C	.	.	PASS	END=110766220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	110766221	.	C	.	.	PASS	END=110766247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	110766248	.	G	.	.	PASS	END=110766267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	110766268	.	C	.	.	PASS	END=110766271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	110766272	.	G	.	.	PASS	END=110766287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	110766288	.	G	.	.	PASS	END=110766344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	110766345	.	T	.	.	PASS	END=110766416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	110766417	.	T	.	.	PASS	END=110766428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	110766429	.	T	.	.	PASS	END=110766454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	110766455	.	G	.	.	PASS	END=110766475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	110766476	.	C	.	.	PASS	END=110766487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	110766488	.	C	.	.	PASS	END=110766504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	110766505	.	T	.	.	PASS	END=110766523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	110766524	.	T	.	.	PASS	END=110766530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	110766531	.	A	.	.	PASS	END=110766535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	110766536	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	110766537	.	T	.	.	PASS	END=110766539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	110766540	.	G	.	.	PASS	END=110766563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	110766564	.	T	.	.	PASS	END=110766565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	110766566	.	G	.	.	PASS	END=110766573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	110766574	.	A	.	.	PASS	END=110766597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	110766598	.	T	.	.	PASS	END=110766606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	110766607	.	G	.	.	PASS	END=110766611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	110766612	.	T	.	.	PASS	END=110766620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	110766621	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:60
chr1	110766622	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chr1	110766623	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	110766624	.	G	.	.	PASS	END=110766626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	110766627	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:18:60
chr1	110766628	.	T	.	.	PASS	END=110766643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	110766644	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	110766645	.	G	.	60.09	PASS	DP=14;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:11:13:30.10:60:30
chr1	110766646	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr1	110766647	.	G	.	.	PASS	END=110766656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	110768595	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768596	.	G	.	.	LowGQX	.	GT	./.
chr1	110768597	.	A	.	.	LowGQX	END=110768598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768599	.	T	.	.	LowGQX	.	GT	./.
chr1	110768600	.	C	.	.	LowGQX	END=110768601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768602	.	A	.	.	LowGQX	.	GT	./.
chr1	110768603	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768604	.	G	.	.	LowGQX	.	GT	./.
chr1	110768605	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768606	.	A	.	.	LowGQX	END=110768607	GT	./.
chr1	110768608	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768609	.	A	.	.	LowGQX	END=110768611	GT	./.
chr1	110768612	.	G	.	.	LowGQX	END=110768615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768616	.	T	.	.	LowGQX	.	GT	./.
chr1	110768617	.	G	.	.	LowGQX	END=110768620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768621	.	A	.	.	LowGQX	.	GT	./.
chr1	110768622	.	C	.	.	LowGQX	END=110768624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768625	.	A	.	.	LowGQX	.	GT	./.
chr1	110768626	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768627	.	T	.	.	LowGQX	.	GT	./.
chr1	110768628	.	G	.	.	LowGQX	END=110768632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768633	.	C	.	.	LowGQX	.	GT	./.
chr1	110768634	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768635	.	G	.	.	LowGQX	END=110768637	GT	./.
chr1	110768638	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768639	.	A	.	.	LowGQX	.	GT	./.
chr1	110768640	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768641	.	G	.	.	LowGQX	.	GT	./.
chr1	110768642	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768643	.	G	.	.	LowGQX	.	GT	./.
chr1	110768644	.	G	.	.	LowGQX	END=110768646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768647	.	G	.	.	LowGQX	.	GT	./.
chr1	110768648	.	C	.	.	LowGQX	END=110768649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768650	.	G	.	.	LowGQX	.	GT	./.
chr1	110768651	.	G	.	.	LowGQX	END=110768653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768654	.	T	.	.	LowGQX	.	GT	./.
chr1	110768655	.	C	.	.	LowGQX	END=110768656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768657	.	C	.	.	LowGQX	.	GT	./.
chr1	110768658	.	C	.	.	LowGQX	END=110768661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768662	.	C	.	.	LowGQX	.	GT	./.
chr1	110768663	.	C	.	.	LowGQX	END=110768670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768671	.	T	.	.	LowGQX	.	GT	./.
chr1	110768672	.	C	.	.	LowGQX	END=110768674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768675	.	C	.	.	LowGQX	.	GT	./.
chr1	110768676	.	C	.	.	LowGQX	END=110768677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768678	.	C	.	.	LowGQX	END=110768679	GT	./.
chr1	110768680	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768681	.	C	.	.	LowGQX	.	GT	./.
chr1	110768682	.	C	.	.	LowGQX	END=110768684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768685	.	C	.	.	LowGQX	.	GT	./.
chr1	110768686	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768687	.	A	.	.	LowGQX	.	GT	./.
chr1	110768688	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768689	.	G	.	.	LowGQX	.	GT	./.
chr1	110768690	.	A	.	.	LowGQX	END=110768699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110768700	.	C	.	.	LowGQX	END=110768940	GT	./.
chr1	110774838	.	G	.	.	LowGQX	END=110774937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110775449	.	C	.	.	LowGQX	END=110775613	GT	./.
chr1	110876470	.	T	.	.	LowGQX	END=110876569	GT	./.
chr1	110882026	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	110882027	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	110882028	.	A	.	.	LowGQX	END=110882029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	110882030	.	G	.	.	PASS	END=110882032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	110882033	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	110882034	.	A	.	.	PASS	END=110882035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	110882036	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	110882037	.	G	.	.	PASS	END=110882045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	110882046	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	110882047	.	A	.	.	PASS	END=110882064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:59
chr1	110882065	.	G	.	.	PASS	END=110882071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	110882072	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	110882073	.	T	.	.	PASS	END=110882085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	110882086	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	110882087	.	T	.	.	PASS	END=110882093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	110882094	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	110882095	.	G	.	.	PASS	END=110882097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	110882098	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:21:60
chr1	110882099	.	A	.	.	PASS	END=110882102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	110882103	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:21:60
chr1	110882104	.	G	.	.	PASS	END=110882118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	110882119	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	110882120	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:36:60
chr1	110882121	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr1	110882122	.	C	.	.	PASS	END=110882124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	110882125	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:21:60
chr1	110882126	.	G	.	.	PASS	END=110882136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	110882137	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	110882138	.	C	.	.	PASS	END=110882139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	110882140	.	A	.	28.37	LowGQX	DP=14;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:10:14:2.27:60:2
chr1	110882141	.	C	.	.	PASS	END=110882149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	110882150	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:18:60
chr1	110882151	.	C	.	.	PASS	END=110882156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	110882157	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	110882158	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:2:60
chr1	110882159	.	A	.	.	PASS	END=110882172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	110882173	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:7:60
chr1	110882174	.	G	.	.	PASS	END=110882178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	110882179	.	C	.	.	PASS	END=110882181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	110882182	.	C	.	.	PASS	END=110882186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	110882187	.	A	.	.	PASS	END=110882188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	110882189	.	G	.	.	PASS	END=110882192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	110882193	.	A	.	.	PASS	END=110882195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	110882196	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:48:60
chr1	110882197	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:6:60
chr1	110882198	.	C	.	.	PASS	END=110882214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	110882215	.	A	.	.	PASS	END=110882240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	110882241	.	A	.	.	PASS	END=110882255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	110882256	.	T	.	.	PASS	END=110882258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	110882259	.	G	.	.	PASS	END=110882260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	110882261	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:42:60
chr1	110882262	.	G	.	.	PASS	END=110882273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	110882274	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:33:60
chr1	110882275	.	G	.	.	PASS	END=110882278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	110882279	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:54:60
chr1	110882280	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	110882281	.	G	.	.	PASS	END=110882286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:59
chr1	110882287	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:39:59
chr1	110882288	.	G	.	.	PASS	END=110882296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:59
chr1	110882297	.	C	.	.	PASS	END=110882304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:59
chr1	110882305	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:36:59
chr1	110882306	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:63:59
chr1	110882307	.	T	.	.	PASS	END=110882312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:59
chr1	110882313	.	C	.	.	PASS	END=110882320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:59
chr1	110882321	.	C	.	.	PASS	END=110882322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:59
chr1	110882323	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:45:59
chr1	110882324	.	C	.	.	PASS	END=110882330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:59
chr1	110882331	.	A	.	.	PASS	END=110882334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:59
chr1	110882335	.	C	.	.	PASS	END=110882341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:59
chr1	110882342	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:51:59
chr1	110882343	.	C	.	.	PASS	END=110882347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:59
chr1	110882348	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:54:59
chr1	110882349	.	G	.	.	PASS	END=110882363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:59
chr1	110882364	.	G	.	.	PASS	END=110882366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	110882367	.	A	.	.	PASS	END=110882374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	110882375	.	G	.	.	PASS	END=110882387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	110882388	.	A	.	.	PASS	END=110882389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	110882390	.	C	.	.	PASS	END=110882400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	110882401	.	G	.	.	PASS	END=110882443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	110882444	.	A	G	1458.37	PASS	DP=47;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.3630;MQ=60;MQ0=0;QD=31.03;SB=-350.65	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,46:47:99:1491,117,0:60:99:1.000
chr1	110882445	.	T	.	.	PASS	END=110882489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	110882490	.	G	.	.	PASS	END=110882537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	110882538	.	A	.	.	PASS	END=110882582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	110882583	.	G	.	.	PASS	END=110882733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	110882734	.	G	.	.	PASS	END=110882855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	110882856	.	G	.	.	PASS	END=110882910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	110882911	.	C	.	.	PASS	END=110883002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	110883003	.	G	.	.	PASS	END=110883038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	110883039	.	A	.	.	PASS	END=110883108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	110883109	.	T	.	.	PASS	END=110883226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	110883227	.	C	.	.	PASS	END=110883268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	110883269	.	T	.	.	PASS	END=110883344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:96:60
chr1	110883345	.	A	.	.	PASS	END=110883403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	110883404	.	G	.	.	PASS	END=110883417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	110883418	.	C	.	.	PASS	END=110883423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	110883424	.	T	.	.	PASS	END=110883426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	110883427	.	C	.	.	PASS	END=110883447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	110883448	.	A	.	.	PASS	END=110883467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	110883468	.	A	.	.	PASS	END=110883474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	110883475	.	C	.	.	PASS	END=110883490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	110883491	.	A	.	.	PASS	END=110883497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	110883498	.	A	.	.	PASS	END=110883503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	110883504	.	G	.	.	PASS	END=110883517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:90:60
chr1	110883518	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:68:60
chr1	110883519	.	G	.	.	PASS	END=110883542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	110883543	.	G	.	.	PASS	END=110883588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	110883589	.	G	.	.	PASS	END=110883600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	110883601	.	A	.	.	PASS	END=110883700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	110883701	.	A	.	.	PASS	END=110883739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	110883740	.	A	.	.	PASS	END=110883790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	110883791	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:84:1:60
chr1	110883792	.	C	.	.	PASS	END=110883890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	110883891	.	T	.	.	PASS	END=110884163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	110884164	.	C	.	.	PASS	END=110884215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	110884216	.	A	.	.	PASS	END=110884280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr1	110884281	.	A	.	.	PASS	END=110884344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	110884345	.	G	.	.	PASS	END=110884373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	110884374	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:76:60
chr1	110884375	.	A	.	.	PASS	END=110884491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	110884492	.	C	.	.	PASS	END=110884611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:85:60
chr1	110884612	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:69:60
chr1	110884613	.	T	.	.	PASS	END=110884657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:81:60
chr1	110884658	.	A	.	.	PASS	END=110884745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	110884746	.	C	.	.	PASS	END=110884875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	110884876	.	T	.	.	PASS	END=110884891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	110884892	.	T	.	.	PASS	END=110884899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	110884900	.	A	.	.	PASS	END=110884901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	110888089	.	C	.	.	PASS	END=110888231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	110888232	.	T	.	.	PASS	END=110888243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	110888244	.	T	.	.	PASS	END=110888246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	110888903	.	T	.	.	PASS	END=110888996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:59
chr1	110888997	.	T	.	.	PASS	END=110889002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	110906386	.	T	.	.	LowGQX	END=110906535	GT	./.
chr1	110918060	.	G	.	.	LowGQX	END=110918156	GT	./.
chr1	110918157	.	T	.	.	LowGQX	END=110918175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	110919570	.	A	.	.	LowGQX	END=110919615	GT	./.
chr1	110919616	.	C	.	.	LowGQX	END=110919652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110919653	.	G	.	.	LowGQX	.	GT	./.
chr1	110919654	.	G	.	.	LowGQX	END=110919706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110919707	.	G	.	.	LowGQX	.	GT	./.
chr1	110919708	.	T	.	.	LowGQX	END=110919765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110919766	.	T	.	.	LowGQX	END=110919785	GT	./.
chr1	110921473	.	A	.	.	LowGQX	END=110921788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110921789	.	T	.	.	LowGQX	END=110921980	GT	./.
chr1	110923602	.	A	.	.	LowGQX	END=110923767	GT	./.
chr1	110924272	.	A	.	.	LowGQX	END=110924284	GT	./.
chr1	110924285	.	C	.	.	LowGQX	END=110924287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924288	.	A	.	.	LowGQX	END=110924289	GT	./.
chr1	110924290	.	A	.	.	LowGQX	END=110924297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924298	.	A	.	.	LowGQX	.	GT	./.
chr1	110924299	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924300	.	A	.	.	LowGQX	END=110924301	GT	./.
chr1	110924302	.	A	.	.	LowGQX	END=110924308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924309	.	A	.	.	LowGQX	.	GT	./.
chr1	110924310	.	T	.	.	LowGQX	END=110924311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924312	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	110924313	.	T	.	.	LowGQX	END=110924314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924315	.	G	.	.	LowGQX	END=110924317	GT	./.
chr1	110924318	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924319	.	C	.	.	LowGQX	.	GT	./.
chr1	110924320	.	C	.	.	LowGQX	END=110924321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924322	.	A	.	.	LowGQX	.	GT	./.
chr1	110924323	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	110924324	.	C	.	.	LowGQX	END=110924326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924327	.	C	.	.	LowGQX	END=110924329	GT	./.
chr1	110924330	.	A	.	.	LowGQX	END=110924337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924338	.	T	.	.	LowGQX	END=110924343	GT	./.
chr1	110924344	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924345	.	G	.	.	LowGQX	END=110924346	GT	./.
chr1	110924347	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924348	.	A	.	.	LowGQX	.	GT	./.
chr1	110924349	.	C	.	.	LowGQX	END=110924350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924351	.	A	.	.	LowGQX	.	GT	./.
chr1	110924352	.	C	.	.	LowGQX	END=110924356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924357	.	G	.	.	LowGQX	END=110924360	GT	./.
chr1	110924361	.	C	.	.	LowGQX	END=110924368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924369	.	G	.	.	LowGQX	.	GT	./.
chr1	110924370	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924371	.	G	.	.	LowGQX	END=110924372	GT	./.
chr1	110924373	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924374	.	A	.	.	LowGQX	.	GT	./.
chr1	110924375	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924376	.	T	.	.	LowGQX	END=110924379	GT	./.
chr1	110924380	.	C	.	.	LowGQX	END=110924381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924382	.	C	.	.	LowGQX	.	GT	./.
chr1	110924383	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924384	.	C	.	.	LowGQX	END=110924385	GT	./.
chr1	110924386	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924387	.	A	.	.	LowGQX	END=110924388	GT	./.
chr1	110924389	.	T	.	.	LowGQX	END=110924391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924392	.	G	.	.	LowGQX	.	GT	./.
chr1	110924393	.	T	.	.	LowGQX	END=110924395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924396	.	C	.	.	LowGQX	.	GT	./.
chr1	110924397	.	A	.	.	LowGQX	END=110924411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924412	.	G	.	.	LowGQX	.	GT	./.
chr1	110924413	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924414	.	G	.	.	LowGQX	END=110924418	GT	./.
chr1	110924419	.	T	.	.	LowGQX	END=110924424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924425	.	G	.	.	LowGQX	.	GT	./.
chr1	110924426	.	A	.	.	LowGQX	END=110924431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924432	.	G	.	.	LowGQX	END=110924433	GT	./.
chr1	110924434	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110924435	.	A	.	.	LowGQX	END=110924451	GT	./.
chr1	110925454	.	A	.	.	LowGQX	.	GT	./.
chr1	110925455	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110925456	.	C	.	.	LowGQX	.	GT	./.
chr1	110925457	.	T	.	.	LowGQX	END=110925459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110925460	.	A	.	.	LowGQX	.	GT	./.
chr1	110925461	.	C	.	.	LowGQX	END=110925477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110925478	.	C	.	.	LowGQX	.	GT	./.
chr1	110925479	.	A	.	.	LowGQX	END=110925481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110925482	.	A	.	.	LowGQX	.	GT	./.
chr1	110925483	.	T	.	.	LowGQX	END=110925495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110925496	.	A	.	.	LowGQX	.	GT	./.
chr1	110925497	.	C	.	.	LowGQX	END=110925509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110925510	.	A	.	.	LowGQX	.	GT	./.
chr1	110925511	.	G	.	.	LowGQX	END=110925515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110925516	.	C	.	.	LowGQX	.	GT	./.
chr1	110925517	.	T	.	.	LowGQX	END=110925534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110925535	.	G	.	.	LowGQX	.	GT	./.
chr1	110925536	.	A	.	.	LowGQX	END=110925557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110925558	.	T	.	.	LowGQX	END=110925590	GT	./.
chr1	110931797	.	A	.	.	LowGQX	END=110931952	GT	./.
chr1	110944126	.	T	.	.	LowGQX	END=110944225	GT	./.
chr1	110946539	.	A	.	.	LowGQX	END=110946660	GT	./.
chr1	110948921	.	T	.	.	LowGQX	END=110949020	GT	./.
chr1	110949621	.	T	.	.	LowGQX	END=110949720	GT	./.
chr1	110950206	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	110950207	.	C	.	.	LowGQX	END=110950490	GT	./.
chr1	110993788	.	G	.	.	PASS	END=110993820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	110993821	.	C	.	.	PASS	END=110993858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	110993859	.	C	.	.	PASS	END=110993874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	110993875	.	C	.	.	PASS	END=110993961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	110996532	.	C	.	.	PASS	END=110996555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	110996556	.	C	.	.	PASS	END=110996573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	110996574	.	C	.	.	PASS	END=110996595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	110996596	.	A	.	.	PASS	END=110996713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	110996714	.	C	.	.	PASS	END=110996731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	110996732	.	T	.	.	PASS	END=110996744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	110996745	.	G	.	.	PASS	END=110996757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	110996758	.	G	.	.	PASS	END=110996759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	110998803	.	G	.	.	PASS	END=110998824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	110998825	.	G	.	.	PASS	END=110998845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	110998846	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:48:60
chr1	110998847	.	T	.	.	PASS	END=110998853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:84:60
chr1	110998854	.	G	A	1538.83	PASS	DP=66;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=8.6278;MQ=60;MQ0=0;QD=23.32;SB=-770.38	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,64:66:99:1572,117,0:60:99:1.000
chr1	110998855	.	T	.	.	PASS	END=110998960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:93:60
chr1	110998961	.	C	.	.	PASS	END=110999024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	111059872	.	G	.	.	LowGQX	END=111059878	GT	./.
chr1	111059879	.	T	.	.	LowGQX	END=111059884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111059885	.	A	.	.	LowGQX	.	GT	./.
chr1	111059886	.	C	.	.	LowGQX	END=111059903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111059904	.	A	.	.	LowGQX	.	GT	./.
chr1	111059905	.	C	.	.	LowGQX	END=111059906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111059907	.	A	.	.	LowGQX	END=111059911	GT	./.
chr1	111059912	.	T	.	.	LowGQX	END=111059913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111059914	.	T	.	.	LowGQX	.	GT	./.
chr1	111059915	.	T	.	.	LowGQX	END=111059923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	111059924	.	A	.	.	LowGQX	END=111059935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	111059936	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	111059937	.	C	.	.	LowGQX	END=111059943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	111059944	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	111059945	.	A	.	.	LowGQX	END=111059947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	111059948	.	C	A	6.77	LowGQX;LowQD	BaseQRankSum=0.000;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=-1.026;QD=1.69;ReadPosRankSum=-1.026;SB=-30.29	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:35.74:36,0,66:60:7:0.500
chr1	111059949	.	T	.	.	LowGQX	END=111059961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	111059962	.	A	.	.	LowGQX	END=111059963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	111059964	.	T	.	.	LowGQX	END=111059977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	111059978	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	111059979	.	T	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	111059980	.	G	.	.	LowGQX	END=111059983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	111059984	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	111059985	.	G	.	.	LowGQX	END=111059998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	111059999	.	C	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	111060000	.	A	.	.	LowGQX	END=111060005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	111060006	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:60
chr1	111060007	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:60
chr1	111060008	.	T	.	.	LowGQX	END=111060011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	111060012	.	C	.	.	LowGQX	END=111060013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	111060014	.	G	.	.	LowGQX	END=111060015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	111060016	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	111060017	.	G	.	.	LowGQX	END=111060025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	111060026	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr1	111060027	.	A	.	.	LowGQX	END=111060030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	111060031	.	A	.	.	LowGQX	END=111060049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	111060050	.	G	.	.	LowGQX	END=111060052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	111060053	.	C	.	.	LowGQX	END=111060058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	111060059	.	G	.	.	LowGQX	END=111060065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	111060066	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	111060067	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	111060068	.	T	.	.	LowGQX	END=111060069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	111060070	.	A	.	.	LowGQX	END=111060081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	111060082	.	A	.	.	LowGQX	END=111060083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	111060084	.	G	.	.	PASS	END=111060086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	111060087	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	111060088	.	C	.	.	PASS	END=111060092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	111060093	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	111060094	.	G	.	.	PASS	END=111060097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	111060098	.	C	.	.	LowGQX	END=111060100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	111060101	.	C	.	.	PASS	END=111060120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	111060121	.	G	.	.	PASS	END=111060140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	111060141	.	G	.	.	PASS	END=111060155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	111060156	.	G	.	.	PASS	END=111060159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	111060160	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:54:60
chr1	111060161	.	C	.	.	PASS	END=111060168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	111060169	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:30:60
chr1	111060170	.	A	.	.	PASS	END=111060177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	111060178	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:87:60
chr1	111060179	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:45:60
chr1	111060180	.	A	.	.	PASS	END=111060194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	111060195	.	G	.	.	PASS	END=111060205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	111060206	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:55:60
chr1	111060207	.	T	.	.	PASS	END=111060220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	111060221	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:64:60
chr1	111060222	.	A	.	.	PASS	END=111060243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	111060244	.	A	.	.	PASS	END=111060270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	111060271	.	A	.	.	PASS	END=111060301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	111060302	.	C	.	.	PASS	END=111060393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	111060394	.	A	.	.	PASS	END=111060427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	111060428	.	C	.	.	PASS	END=111060441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	111060442	.	A	.	.	PASS	END=111060452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	111060453	.	G	.	.	PASS	END=111060474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	111060475	.	A	.	.	PASS	END=111060486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	111060487	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:63:60
chr1	111060488	.	C	.	.	PASS	END=111060495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	111060496	.	T	.	.	PASS	END=111060498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	111060499	.	A	.	.	PASS	END=111060504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	111060505	.	T	.	.	PASS	END=111060515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	111060516	.	G	.	.	PASS	END=111060517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	111060518	.	C	.	.	PASS	END=111060555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	111060556	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	111060557	.	C	.	.	PASS	END=111060562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	111060563	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr1	111060564	.	G	.	.	PASS	END=111060592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:60
chr1	111060593	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	111060594	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	111060595	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	111060596	.	A	.	.	LowGQX	END=111060597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	111060598	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	111060599	.	A	.	.	LowGQX	END=111060600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	111060601	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	111060602	.	G	.	.	LowGQX	END=111060603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr1	111060604	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	111060605	.	C	.	.	LowGQX	END=111060615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	111060616	.	G	.	.	LowGQX	END=111060629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	111060630	.	T	.	.	LowGQX	END=111060649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	111060650	.	T	.	.	LowGQX	END=111060656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	111060657	.	T	.	.	LowGQX	.	GT	./.
chr1	111060658	.	C	.	.	LowGQX	END=111060668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	111060669	.	T	C	44.20	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=22.10;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:75,6,0:60:6:1.000
chr1	111060670	.	A	.	.	LowGQX	END=111060698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111060699	.	T	.	.	LowGQX	END=111061411	GT	./.
chr1	111136483	.	G	.	.	LowGQX	END=111136582	GT	./.
chr1	111144651	.	C	.	.	LowGQX	END=111144674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111144675	.	C	.	.	LowGQX	END=111144792	GT	./.
chr1	111145903	.	A	.	.	LowGQX	END=111146037	GT	./.
chr1	111146038	.	G	.	.	LowGQX	END=111146053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111146054	.	A	.	.	LowGQX	.	GT	./.
chr1	111146055	.	G	.	.	LowGQX	END=111146066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111146067	.	T	.	.	LowGQX	.	GT	./.
chr1	111146068	.	T	.	.	LowGQX	END=111146097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111146098	.	G	.	.	LowGQX	.	GT	./.
chr1	111146099	.	G	.	.	LowGQX	END=111146104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111146105	.	T	.	.	LowGQX	.	GT	./.
chr1	111146106	.	T	.	.	LowGQX	END=111146161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111146162	.	A	.	.	LowGQX	END=111146163	GT	./.
chr1	111146164	.	T	.	.	LowGQX	END=111146178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111146179	.	A	.	.	LowGQX	.	GT	./.
chr1	111146180	.	T	.	.	LowGQX	END=111146181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111146182	.	A	.	.	LowGQX	.	GT	./.
chr1	111146183	.	C	.	.	LowGQX	END=111146185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111146186	.	G	.	.	LowGQX	.	GT	./.
chr1	111146187	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111146188	.	A	.	.	LowGQX	END=111146194	GT	./.
chr1	111146195	.	A	.	.	LowGQX	END=111146247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111146248	.	C	.	.	LowGQX	END=111146317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	111146318	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	111146319	.	T	.	.	LowGQX	END=111146384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	111146385	.	G	.	.	LowGQX	END=111146405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111146406	.	G	.	.	LowGQX	.	GT	./.
chr1	111146407	.	A	.	.	LowGQX	END=111146617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111146618	.	T	.	.	LowGQX	END=111146676	GT	./.
chr1	111146677	.	G	.	.	LowGQX	END=111146803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111146804	.	T	.	.	LowGQX	.	GT	./.
chr1	111146805	.	C	.	.	LowGQX	END=111146825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111146826	.	T	.	.	LowGQX	END=111147406	GT	./.
chr1	111215702	.	T	.	.	PASS	END=111215759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	111215760	.	T	.	.	PASS	END=111215935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:267:99:60
chr1	111215936	.	T	.	.	PASS	END=111216005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:280:99:60
chr1	111216006	.	C	.	.	PASS	END=111216099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	111216100	.	T	.	.	PASS	END=111216293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	111216294	.	G	.	.	PASS	END=111216511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	111216512	.	G	.	.	PASS	END=111216804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	111216805	.	C	.	.	PASS	END=111216918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	111216919	.	C	.	.	PASS	END=111216957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	111216958	.	G	.	.	PASS	END=111217069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	111217070	.	G	.	.	PASS	END=111217108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	111217109	.	A	.	.	PASS	END=111217143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	111217144	.	C	.	.	PASS	END=111217178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	111217179	.	G	.	.	PASS	END=111217266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	111217267	.	C	.	.	PASS	END=111217323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	111217324	.	C	.	.	PASS	END=111217331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	111217332	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:66:60
chr1	111217333	.	G	.	.	PASS	END=111217338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	111217339	.	A	.	.	PASS	END=111217340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	111217341	.	C	.	.	PASS	END=111217352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	111217353	.	C	.	.	PASS	END=111217360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	111217361	.	T	.	.	PASS	END=111217363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	111217364	.	G	.	.	PASS	END=111217365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	111217366	.	A	.	.	PASS	END=111217369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	111217370	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr1	111217371	.	G	.	.	PASS	END=111217372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	111217373	.	G	.	.	LowGQX	END=111217375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	111217376	.	C	.	.	LowGQX	END=111217384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	111217385	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	111217386	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	111217387	.	T	.	.	LowGQX	END=111217392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	111217393	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	111217394	.	G	.	.	LowGQX	END=111217401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	111217402	.	C	.	.	LowGQX	END=111217404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	111217405	.	G	.	.	LowGQX	END=111217410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	111217411	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	111217412	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	111217413	.	G	.	.	LowGQX	END=111217415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	111217416	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	111217417	.	G	.	.	LowGQX	END=111217419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	111217420	.	G	.	.	LowGQX	END=111217421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	111217422	.	G	.	.	LowGQX	END=111217423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	111217424	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	111217425	.	C	.	4.58	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.01:60:0
chr1	111217426	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	111217427	.	T	.	.	LowGQX	END=111217428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	111217429	.	C	.	.	LowGQX	END=111217441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	111217442	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	111434013	.	G	.	.	LowGQX	END=111434112	GT	./.
chr1	111434945	.	G	.	.	LowGQX	END=111435157	GT	./.
chr1	111436937	.	G	.	.	LowGQX	END=111437036	GT	./.
chr1	111437580	.	A	.	.	LowGQX	END=111437679	GT	./.
chr1	111439213	.	T	.	.	LowGQX	END=111439262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111439263	.	T	.	.	LowGQX	.	GT	./.
chr1	111439264	.	T	.	.	LowGQX	END=111439290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111439291	.	T	.	.	LowGQX	END=111439365	GT	./.
chr1	111440423	.	T	.	.	LowGQX	END=111440522	GT	./.
chr1	111441732	.	A	.	.	LowGQX	END=111441831	GT	./.
chr1	111490579	.	T	.	.	LowGQX	END=111490683	GT	./.
chr1	111490684	.	A	.	.	LowGQX	END=111490686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111490687	.	T	.	.	LowGQX	.	GT	./.
chr1	111490688	.	C	.	.	LowGQX	END=111490712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111490713	.	T	.	.	LowGQX	.	GT	./.
chr1	111490714	.	T	.	.	LowGQX	END=111490716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111490717	.	G	.	.	LowGQX	.	GT	./.
chr1	111490718	.	T	.	.	LowGQX	END=111490735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111490736	.	A	.	.	LowGQX	.	GT	./.
chr1	111490737	.	A	.	.	LowGQX	END=111490739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111490740	.	A	.	.	LowGQX	END=111490741	GT	./.
chr1	111490742	.	T	.	.	LowGQX	END=111490745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111490746	.	T	.	.	LowGQX	.	GT	./.
chr1	111490747	.	T	.	.	LowGQX	END=111490792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111490793	.	G	.	.	LowGQX	.	GT	./.
chr1	111490794	.	G	.	.	LowGQX	END=111490798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111490799	.	A	.	.	LowGQX	.	GT	./.
chr1	111490800	.	G	.	.	LowGQX	END=111490804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111490805	.	C	.	.	LowGQX	.	GT	./.
chr1	111490806	.	C	.	.	LowGQX	END=111490807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111490808	.	T	.	.	LowGQX	.	GT	./.
chr1	111490809	.	C	.	.	LowGQX	END=111490810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111490811	.	C	.	.	LowGQX	END=111490812	GT	./.
chr1	111490813	.	G	.	.	LowGQX	END=111490816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111490817	.	T	.	.	LowGQX	.	GT	./.
chr1	111490818	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111490819	.	T	.	.	LowGQX	.	GT	./.
chr1	111490820	.	T	.	.	LowGQX	END=111490822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111490823	.	C	.	.	LowGQX	.	GT	./.
chr1	111490824	.	T	.	.	LowGQX	END=111490829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111490830	.	G	.	.	LowGQX	.	GT	./.
chr1	111490831	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111490832	.	T	.	.	LowGQX	.	GT	./.
chr1	111490833	.	T	.	.	LowGQX	END=111490834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111490835	.	T	.	.	LowGQX	END=111490990	GT	./.
chr1	111490991	.	T	.	.	LowGQX	END=111491008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111491009	.	T	.	.	LowGQX	END=111491011	GT	./.
chr1	111491012	.	C	.	.	LowGQX	END=111491014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111491015	.	A	.	.	LowGQX	.	GT	./.
chr1	111491016	.	A	.	.	LowGQX	END=111491017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111491018	.	T	.	.	LowGQX	.	GT	./.
chr1	111491019	.	C	.	.	LowGQX	END=111491023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111492471	.	A	.	.	LowGQX	END=111492747	GT	./.
chr1	111493908	.	A	.	.	LowGQX	END=111495439	GT	./.
chr1	111506227	.	C	.	.	LowGQX	END=111506326	GT	./.
chr1	111660726	.	A	.	.	LowGQX	END=111660729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111660730	.	T	.	.	LowGQX	.	GT	./.
chr1	111660731	.	T	.	.	LowGQX	END=111660756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111660757	.	A	.	.	LowGQX	END=111660891	GT	./.
chr1	111661424	.	T	.	.	LowGQX	END=111661523	GT	./.
chr1	111662491	.	G	.	.	LowGQX	END=111662590	GT	./.
chr1	111663136	.	A	.	.	LowGQX	END=111663166	GT	./.
chr1	111663167	.	A	.	.	LowGQX	END=111663216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111663217	.	C	.	.	LowGQX	.	GT	./.
chr1	111663218	.	A	.	.	LowGQX	END=111663279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111663280	.	A	.	.	LowGQX	.	GT	./.
chr1	111663281	.	G	.	.	LowGQX	END=111663310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111663311	.	G	.	.	LowGQX	.	GT	./.
chr1	111663312	.	T	.	.	LowGQX	END=111663315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111663316	.	C	.	.	LowGQX	END=111663317	GT	./.
chr1	111667322	.	A	.	.	LowGQX	END=111667387	GT	./.
chr1	111667388	.	T	.	.	LowGQX	END=111667394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111667395	.	C	.	.	LowGQX	.	GT	./.
chr1	111667396	.	A	.	.	LowGQX	END=111667397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111667398	.	C	.	.	LowGQX	.	GT	./.
chr1	111667399	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111667400	.	C	.	.	LowGQX	.	GT	./.
chr1	111667401	.	A	.	.	LowGQX	END=111667422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111667423	.	C	.	.	LowGQX	.	GT	./.
chr1	111667424	.	C	.	.	LowGQX	END=111667425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111667426	.	T	.	.	LowGQX	END=111667427	GT	./.
chr1	111667428	.	T	.	.	LowGQX	END=111667440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111667441	.	T	.	.	LowGQX	.	GT	./.
chr1	111667442	.	A	.	.	LowGQX	END=111667452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111667453	.	C	.	.	LowGQX	.	GT	./.
chr1	111667454	.	A	.	.	LowGQX	END=111667461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111667462	.	G	.	.	LowGQX	.	GT	./.
chr1	111667463	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111667464	.	G	.	.	LowGQX	.	GT	./.
chr1	111667465	.	C	.	.	LowGQX	END=111667466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111667467	.	T	.	.	LowGQX	END=111667468	GT	./.
chr1	111667469	.	A	.	.	LowGQX	END=111667472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111667473	.	T	.	.	LowGQX	END=111667474	GT	./.
chr1	111667475	.	C	.	.	LowGQX	END=111667478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111667479	.	T	.	.	LowGQX	.	GT	./.
chr1	111667480	.	A	.	.	LowGQX	END=111667488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111667489	.	A	.	.	LowGQX	.	GT	./.
chr1	111667490	.	A	.	.	LowGQX	END=111667491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111667492	.	T	.	.	LowGQX	.	GT	./.
chr1	111667493	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111667494	.	G	.	.	LowGQX	.	GT	./.
chr1	111667495	.	T	.	.	LowGQX	END=111667496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111667497	.	G	.	.	LowGQX	END=111667498	GT	./.
chr1	111667499	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111667500	.	A	.	.	LowGQX	.	GT	./.
chr1	111667501	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111667502	.	G	.	.	LowGQX	END=111667504	GT	./.
chr1	111667505	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111668833	.	C	.	.	LowGQX	END=111668932	GT	./.
chr1	111674044	.	A	.	.	LowGQX	END=111674178	GT	./.
chr1	111690335	.	C	.	.	LowGQX	END=111690412	GT	./.
chr1	111690413	.	G	.	.	LowGQX	END=111690613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111690614	.	T	.	.	LowGQX	END=111690677	GT	./.
chr1	111701980	.	C	.	.	LowGQX	END=111702184	GT	./.
chr1	111703735	.	T	.	.	LowGQX	END=111703920	GT	./.
chr1	111717494	.	T	.	.	LowGQX	END=111717593	GT	./.
chr1	111724807	.	A	.	.	LowGQX	END=111724996	GT	./.
chr1	111725419	.	A	.	.	LowGQX	END=111725429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111725430	.	G	.	.	LowGQX	.	GT	./.
chr1	111725431	.	T	.	.	LowGQX	END=111725439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111725440	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	111725441	.	T	.	.	LowGQX	END=111725533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	111725534	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	111725535	.	C	.	.	LowGQX	END=111725581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	111726082	.	A	.	.	LowGQX	.	GT	./.
chr1	111726083	.	G	.	.	LowGQX	END=111726096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111726097	.	C	.	.	LowGQX	.	GT	./.
chr1	111726098	.	G	.	.	LowGQX	END=111726101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111726102	.	A	.	.	LowGQX	.	GT	./.
chr1	111726103	.	G	.	.	LowGQX	END=111726111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111726112	.	A	.	.	LowGQX	.	GT	./.
chr1	111726113	.	T	.	.	LowGQX	END=111726119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111726120	.	G	.	.	LowGQX	.	GT	./.
chr1	111726121	.	A	.	.	LowGQX	END=111726125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111726126	.	G	.	.	LowGQX	.	GT	./.
chr1	111726127	.	C	.	.	LowGQX	END=111726134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111726135	.	G	.	.	LowGQX	END=111726211	GT	./.
chr1	111726811	.	A	.	.	LowGQX	END=111726934	GT	./.
chr1	111730216	.	C	.	.	LowGQX	END=111730315	GT	./.
chr1	111730751	.	A	.	.	LowGQX	END=111730994	GT	./.
chr1	111731317	.	G	.	.	LowGQX	END=111731395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	111731396	.	T	.	.	LowGQX	END=111731416	GT	./.
chr1	111731805	.	C	.	.	LowGQX	END=111731872	GT	./.
chr1	111731873	.	G	.	.	LowGQX	END=111731874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111731875	.	C	.	.	LowGQX	.	GT	./.
chr1	111731876	.	C	.	.	LowGQX	END=111731903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111731904	.	G	.	.	LowGQX	.	GT	./.
chr1	111734760	.	A	.	.	LowGQX	END=111734941	GT	./.
chr1	111737198	.	A	.	.	LowGQX	END=111737252	GT	./.
chr1	111737253	.	G	.	.	LowGQX	END=111737350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	111738505	.	C	.	.	LowGQX	END=111738680	GT	./.
chr1	111739787	.	C	.	.	LowGQX	END=111739795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111739796	.	A	.	.	LowGQX	.	GT	./.
chr1	111739797	.	C	.	.	LowGQX	END=111739806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	111739807	.	C	A	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	111739808	.	A	.	.	LowGQX	END=111739809	GT	./.
chr1	111739810	.	G	.	.	LowGQX	END=111739814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	111739815	.	A	.	.	LowGQX	.	GT	./.
chr1	111739816	.	G	.	.	LowGQX	END=111739823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	111739824	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	111739825	.	G	.	.	LowGQX	END=111739857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	111739858	.	A	.	.	LowGQX	.	GT	./.
chr1	111739859	.	G	.	.	LowGQX	END=111739886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111740527	.	C	.	.	LowGQX	END=111740626	GT	./.
chr1	111741250	.	A	.	.	LowGQX	END=111741366	GT	./.
chr1	111742243	.	A	.	.	LowGQX	END=111742422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111742999	.	G	.	.	LowGQX	END=111743098	GT	./.
chr1	111746837	.	A	.	.	LowGQX	END=111746996	GT	./.
chr1	111770322	.	T	.	.	PASS	END=111770401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	111770402	.	G	.	.	PASS	END=111770421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	111772439	.	C	.	.	PASS	END=111772475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	111772476	.	G	.	.	PASS	END=111772525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	111772526	.	C	.	.	PASS	END=111772538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	111773362	.	A	.	.	PASS	END=111773458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	111773459	.	T	.	.	PASS	END=111773567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	111773788	.	G	.	.	PASS	END=111773829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	111773830	.	A	T	1856.04	PASS	BaseQRankSum=1.621;DP=62;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=5.7343;MQ=60;MQ0=0;MQRankSum=0.503;QD=29.94;ReadPosRankSum=-1.621;SB=-1086.68	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,61:62:99:1889,141,0:60:99:0.984
chr1	111773831	.	T	.	.	PASS	END=111773923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	111773924	.	T	.	.	PASS	END=111773938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	111777527	.	A	.	.	PASS	END=111777548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	111777549	.	C	.	.	PASS	END=111777633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	111777634	.	C	.	.	PASS	END=111777676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	111777677	.	C	.	.	PASS	END=111777681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	111778259	.	A	.	.	PASS	END=111778377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	111778378	.	C	.	.	PASS	END=111778387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	111778644	.	A	.	.	PASS	END=111778738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	111778739	.	G	.	.	PASS	END=111778773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	111778774	.	T	.	.	PASS	END=111778777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	111781340	.	A	.	.	PASS	END=111781370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	111781371	.	G	.	.	PASS	END=111781390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	111781391	.	G	.	.	PASS	END=111781417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	111781418	.	A	.	.	PASS	END=111781546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	111781547	.	A	.	.	PASS	END=111781556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	111783897	.	A	.	.	PASS	END=111783918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	111783919	.	T	.	.	PASS	END=111783927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	111783928	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:57:60
chr1	111783929	.	G	.	.	PASS	END=111783941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	111783942	.	C	T	604.71	PASS	BaseQRankSum=1.749;DP=45;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=5.6815;MQ=60;MQ0=0;MQRankSum=-1.602;QD=13.44;ReadPosRankSum=0.477;SB=-299.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:19,24:45:99:635,0,478:60:99:0.558
chr1	111783943	.	T	.	.	PASS	END=111783952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	111783953	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:51:60
chr1	111783954	.	C	.	.	PASS	END=111783976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	111783977	.	T	.	.	PASS	END=111783981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	111783982	.	C	A	503.50	PASS	BaseQRankSum=-0.035;DP=54;Dels=0.00;FS=2.347;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=-0.175;QD=9.32;ReadPosRankSum=0.962;SB=-284.16	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:31,23:54:99:533,0,844:60:99:0.426
chr1	111783983	.	G	.	.	PASS	END=111783995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	111783996	.	A	G	1640.17	PASS	DP=57;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;QD=28.77;SB=-1035.13	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,57:57:99:1673,123,0:60:99:1.000
chr1	111783997	.	C	.	.	PASS	END=111784041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:79:60
chr1	111784042	.	G	.	.	PASS	END=111784067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	111784816	.	G	.	.	PASS	END=111784841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:59
chr1	111784842	.	C	.	.	PASS	END=111784879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:95:60
chr1	111784880	.	G	.	.	PASS	END=111784959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	111784960	.	G	.	.	PASS	END=111784988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	111785791	.	C	.	.	LowGQX	END=111785792	GT	./.
chr1	111785793	.	C	.	.	LowGQX	END=111785794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111785795	.	G	.	.	LowGQX	.	GT	./.
chr1	111785796	.	T	.	.	LowGQX	END=111785797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111785798	.	T	.	.	LowGQX	.	GT	./.
chr1	111785799	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111785800	.	C	.	.	LowGQX	.	GT	./.
chr1	111785801	.	T	.	.	LowGQX	END=111785802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111785803	.	A	.	.	LowGQX	.	GT	./.
chr1	111785804	.	G	.	.	LowGQX	END=111785805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111785806	.	T	.	.	LowGQX	.	GT	./.
chr1	111785807	.	G	.	.	LowGQX	END=111785815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111785816	.	A	.	.	LowGQX	.	GT	./.
chr1	111785817	.	A	.	.	LowGQX	END=111785819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111785820	.	T	.	.	LowGQX	END=111785822	GT	./.
chr1	111785823	.	T	.	.	LowGQX	END=111785832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111785833	.	T	.	.	LowGQX	.	GT	./.
chr1	111785834	.	T	.	.	LowGQX	END=111785836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111785837	.	A	.	.	LowGQX	.	GT	./.
chr1	111785838	.	G	.	.	LowGQX	END=111785843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111785844	.	A	.	.	LowGQX	.	GT	./.
chr1	111785845	.	C	.	.	LowGQX	END=111785846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111785847	.	T	.	.	LowGQX	.	GT	./.
chr1	111785848	.	A	.	.	LowGQX	END=111785849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111785850	.	A	.	.	LowGQX	END=111785851	GT	./.
chr1	111785852	.	A	.	.	LowGQX	END=111785854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111785855	.	A	.	.	LowGQX	.	GT	./.
chr1	111785856	.	G	.	.	LowGQX	END=111785858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111785859	.	G	.	.	LowGQX	.	GT	./.
chr1	111785860	.	G	.	.	LowGQX	END=111785875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111785876	.	G	.	.	LowGQX	END=111785877	GT	./.
chr1	111785878	.	C	.	.	LowGQX	END=111785879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111785880	.	G	.	.	LowGQX	END=111785881	GT	./.
chr1	111785882	.	G	.	.	LowGQX	END=111785890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111833479	.	T	.	.	LowGQX	END=111833578	GT	./.
chr1	111853053	.	T	.	.	PASS	END=111853060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	111853060	.	A	AGCCAATCTAG	3286.85	PASS	BaseQRankSum=-1.868;DP=69;FS=2.186;HRun=0;HaplotypeScore=157.2220;MQ=60;MQ0=0;MQRankSum=1.078;QD=47.64;ReadPosRankSum=0.564;SB=-1363.05	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:45,23:69:99:3287,0,4973:60:99:0.338
chr1	111853061	.	G	.	.	PASS	END=111853152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	111854276	.	T	.	.	PASS	END=111854375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	111854810	.	A	.	.	PASS	END=111854849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	111854850	.	G	.	.	PASS	END=111854888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	111854889	.	A	G	1672.93	PASS	BaseQRankSum=0.812;DP=149;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=35.5291;MQ=60;MQ0=0;MQRankSum=-0.843;QD=11.23;ReadPosRankSum=-1.922;SB=-596.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:78,70:149:99:1703,0,1853:60:99:0.473
chr1	111854890	.	A	.	.	PASS	END=111854894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	111854895	.	G	A	1404.45	PASS	BaseQRankSum=0.592;DP=148;Dels=0.01;FS=0.000;HRun=1;HaplotypeScore=49.9009;MQ=60;MQ0=0;MQRankSum=-0.588;QD=9.49;ReadPosRankSum=-1.702;SB=-550.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:77,68:146:99:1434,0,1931:60:99:0.469
chr1	111854896	.	A	.	.	PASS	END=111854937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	111854938	.	G	T	2065.11	PASS	BaseQRankSum=2.751;DP=159;Dels=0.00;FS=2.266;HRun=0;HaplotypeScore=12.3622;MQ=60;MQ0=0;MQRankSum=0.467;QD=12.99;ReadPosRankSum=0.260;SB=-706.06	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:80,79:159:99:2095,0,1933:60:99:0.497
chr1	111854939	.	G	.	.	PASS	END=111855005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	111855006	.	A	.	.	PASS	END=111855015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	111857141	.	T	.	.	PASS	END=111857153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	111857154	.	T	C	2122.54	PASS	DP=81;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=8.5223;MQ=60;MQ0=0;QD=26.20;SB=-1332.33	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,79:81:99:2156,160,0:60:99:1.000
chr1	111857155	.	T	.	.	PASS	END=111857174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	111857175	.	A	.	.	PASS	END=111857231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	111857232	.	G	.	.	PASS	END=111857240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	111857890	.	A	.	.	PASS	END=111857904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	111857905	.	G	.	.	PASS	END=111857950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	111857951	.	A	G	1860.99	PASS	BaseQRankSum=1.697;DP=166;Dels=0.00;FS=3.750;HRun=0;HaplotypeScore=9.4692;MQ=60;MQ0=0;MQRankSum=-0.565;QD=11.21;ReadPosRankSum=-0.170;SB=-1161.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:86,78:166:99:1891,0,2126:60:99:0.476
chr1	111857952	.	A	.	.	PASS	END=111858013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	111858014	.	G	.	.	PASS	END=111858038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	111858039	.	C	.	.	PASS	END=111858054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	111858055	.	C	.	.	PASS	END=111858059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	111858356	.	A	.	.	LowGQX	END=111858381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	111858382	.	T	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	111858383	.	T	.	.	LowGQX	END=111858443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	111858444	.	C	T	58.30	LowGQ;LowGQX	DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=14.57;SB=-75.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,4:4:6.02:90,6,0:60:6:1.000
chr1	111858445	.	A	.	.	LowGQX	END=111858494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111860301	.	A	.	.	PASS	END=111860352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	111860353	.	G	.	.	PASS	END=111860418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	111860419	.	A	.	.	PASS	END=111860429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	111860606	.	A	.	.	PASS	END=111860623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:58
chr1	111860624	.	C	.	.	PASS	END=111860695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:52
chr1	111860696	.	C	.	.	PASS	END=111860733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:49
chr1	111861113	.	A	.	.	PASS	END=111861128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	111861129	.	C	.	.	PASS	END=111861159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr1	111861160	.	A	.	.	PASS	END=111861253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:247:99:60
chr1	111861254	.	C	.	.	PASS	END=111861283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	111861284	.	T	.	.	PASS	END=111861302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	111861740	.	A	.	.	PASS	END=111861773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	111861774	.	G	.	.	PASS	END=111861821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	111861822	.	G	A	1086.18	PASS	BaseQRankSum=1.701;DP=91;Dels=0.00;FS=4.204;HRun=0;HaplotypeScore=11.5213;MQ=60;MQ0=0;MQRankSum=-0.332;QD=11.94;ReadPosRankSum=-0.405;SB=-583.26	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:49,41:91:99:1116,0,1254:60:99:0.456
chr1	111861823	.	T	.	.	PASS	END=111861840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	111861841	.	A	G	2085.64	PASS	DP=73;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.5754;MQ=60;MQ0=0;QD=28.57;SB=-1021.59	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,71:73:99:2119,163,0:60:99:1.000
chr1	111861842	.	T	.	.	PASS	END=111861863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	111861947	.	A	.	.	PASS	END=111861973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	111861974	.	T	C	1645.76	PASS	DP=61;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;QD=26.98;SB=-824.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,60:61:99:1679,126,0:60:99:1.000
chr1	111861975	.	T	.	.	PASS	END=111862065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:98:60
chr1	111862066	.	A	.	.	PASS	END=111862076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	111862077	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:75:60
chr1	111862078	.	C	T	746.74	PASS	BaseQRankSum=2.155;DP=53;Dels=0.00;FS=2.508;HRun=1;HaplotypeScore=3.8404;MQ=60;MQ0=0;MQRankSum=1.828;QD=14.09;ReadPosRankSum=-1.009;SB=-335.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:21,32:53:99:777,0,479:60:99:0.604
chr1	111862079	.	T	.	.	PASS	END=111862092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	111862833	.	A	.	.	PASS	END=111862854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	111862855	.	C	.	.	PASS	END=111862951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	111862952	.	T	G	4402.08	PASS	DP=153;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=5.8290;MQ=60;MQ0=0;QD=28.77;SB=-2454.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,153:153:99:4402,334,0:60:99:1.000
chr1	111862953	.	C	.	.	PASS	END=111863063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	111863064	.	C	.	.	PASS	END=111863090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	111889235	.	T	.	.	LowGQX	END=111889334	GT	./.
chr1	111889530	.	A	.	.	LowGQX	END=111889673	GT	./.
chr1	111890294	.	A	.	.	LowGQX	END=111890396	GT	./.
chr1	111891136	.	A	.	.	LowGQX	END=111891270	GT	./.
chr1	111892726	.	A	.	.	LowGQX	END=111892847	GT	./.
chr1	111893806	.	T	.	.	LowGQX	END=111893965	GT	./.
chr1	111957084	.	G	.	.	LowGQX	END=111957091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111957092	.	T	.	.	LowGQX	.	GT	./.
chr1	111957093	.	T	.	.	LowGQX	END=111957096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	111957097	.	C	G	36.44	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=18.22;SB=-30.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:68,6,0:60:6:1.000
chr1	111957098	.	A	.	.	LowGQX	END=111957105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	111957106	.	C	.	.	LowGQX	END=111957130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	111957131	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	111957132	.	A	.	.	LowGQX	END=111957155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	111957156	.	G	.	.	LowGQX	END=111957159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	111957160	.	C	.	.	LowGQX	END=111957164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	111957165	.	T	.	.	LowGQX	END=111957182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	111957183	.	C	.	.	LowGQX	END=111957221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	111957222	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	111957223	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	111957224	.	T	.	.	PASS	END=111957226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	111957227	.	T	.	.	LowGQX	END=111957230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	111957231	.	G	.	.	PASS	END=111957236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	111957237	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	111957238	.	G	.	.	PASS	END=111957243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	111957244	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	111957245	.	G	A	108.64	PASS	BaseQRankSum=0.212;DP=13;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-1.381;QD=8.36;ReadPosRankSum=-1.991;SB=-60.40	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:8,5:13:99:139,0,150:60:99:0.385
chr1	111957246	.	G	.	.	LowGQX	END=111957252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:60
chr1	111957253	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr1	111957254	.	G	.	.	LowGQX	END=111957271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	111957272	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr1	111957273	.	T	.	.	LowGQX	END=111957283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	111957284	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:15:60
chr1	111957285	.	T	.	.	LowGQX	END=111957298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	111957299	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	111957300	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	111957301	.	C	.	.	PASS	END=111957302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	111957303	.	A	.	.	LowGQX	END=111957304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:27:60
chr1	111957305	.	C	.	.	PASS	END=111957307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	111957308	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	111957309	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	111957310	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:60
chr1	111957311	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	111957312	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	111957313	.	G	.	.	PASS	END=111957317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	111957318	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	111957319	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	111957320	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	111957321	.	A	.	.	PASS	END=111957374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	111957375	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	111957376	.	C	.	.	PASS	END=111957377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	111957378	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	111957379	.	A	.	.	PASS	END=111957382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	111957383	.	G	.	.	LowGQX	END=111957401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	111957402	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	111957403	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	111957404	.	C	.	.	LowGQX	END=111957405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	111957406	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	111957407	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	111957408	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	111957409	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	111957410	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	111957411	.	C	.	.	LowGQX	END=111957415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	111957416	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	111957417	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	111957418	.	C	.	.	PASS	END=111957421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	111957422	.	C	.	.	LowGQX	END=111957423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	111957424	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	111957425	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:1:60
chr1	111957426	.	C	.	.	PASS	END=111957431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	111957432	.	G	.	.	LowGQX	END=111957435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	111957436	.	C	.	.	PASS	END=111957467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	111957468	.	A	.	.	LowGQX	END=111957469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	111957470	.	A	.	.	PASS	END=111957471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	111957472	.	G	.	.	LowGQX	END=111957473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	111957474	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	111957475	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	111957476	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	111957477	.	G	.	.	PASS	END=111957479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	111957480	.	G	.	.	LowGQX	END=111957481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	111957482	.	C	.	.	PASS	END=111957484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	111957485	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	111957486	.	G	.	.	PASS	END=111957487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	111957488	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	111957489	.	G	.	.	PASS	END=111957491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	111957492	.	C	.	.	LowGQX	END=111957493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	111957494	.	T	.	.	PASS	END=111957495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	111957496	.	C	.	.	LowGQX	END=111957499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	111957500	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	111957501	.	C	.	.	LowGQX	END=111957516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	111957517	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:0:60
chr1	111957518	.	C	.	.	LowGQX	END=111957538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	111957539	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	111957540	.	C	.	.	LowGQX	END=111957542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	111957543	.	A	.	.	LowGQX	END=111957544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	111957545	.	A	.	.	LowGQX	END=111957546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	111957547	.	G	.	.	LowGQX	END=111957555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	111957556	.	T	.	.	LowGQX	END=111957557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	111957558	.	T	.	.	LowGQX	END=111957561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	111957562	.	C	.	18.01	LowGQX	DP=10;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:0.26:60:0
chr1	111957563	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	111957564	.	C	.	.	PASS	END=111957569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	111957570	.	G	C	54.85	SB	BaseQRankSum=-0.370;DP=12;Dels=0.00;FS=2.932;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=0.740;QD=4.57;ReadPosRankSum=-2.034;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:9,3:12:84.85:85,0,270:60:55:0.250
chr1	111957571	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	111957572	.	C	.	.	PASS	END=111957575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	111957576	.	G	.	.	LowGQX	END=111957577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	111957578	.	C	.	.	PASS	END=111957580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	111957581	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr1	111957582	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	111957583	.	A	G	57.68	SB	BaseQRankSum=0.370;DP=13;Dels=0.00;FS=3.233;HRun=0;HaplotypeScore=3.8381;MQ=60;MQ0=0;MQRankSum=0.000;QD=4.44;ReadPosRankSum=0.185;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:9,3:13:87.67:88,0,214:60:58:0.250
chr1	111957584	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	111957585	.	C	.	.	PASS	END=111957591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	111957592	.	A	G	56.11	SB	BaseQRankSum=0.536;DP=13;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=5.7847;MQ=60;MQ0=0;MQRankSum=-0.289;QD=4.32;ReadPosRankSum=-0.289;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:8,4:13:86.11:86,0,165:60:56:0.333
chr1	111957593	.	G	.	.	PASS	END=111957601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	111957602	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:0:60
chr1	111957603	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:36:60
chr1	111957604	.	T	.	.	LowGQX	END=111957606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	111957607	.	G	.	.	PASS	END=111957612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	111957613	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr1	111957614	.	G	.	.	PASS	END=111957615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	111957616	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	111957617	.	C	.	.	PASS	END=111957620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	111957621	.	G	.	.	PASS	END=111957629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	111957630	.	C	.	.	PASS	END=111957649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	111957650	.	C	.	.	PASS	END=111957665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	111957666	.	G	.	.	PASS	END=111957673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	111957674	.	A	.	.	PASS	END=111957692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	111957693	.	A	G	327.43	PASS	BaseQRankSum=0.785;DP=22;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.171;QD=14.88;ReadPosRankSum=0.921;SB=-164.57	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:8,14:22:99:357,0,213:60:99:0.636
chr1	111957694	.	T	.	.	PASS	END=111957726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	111957727	.	C	.	.	PASS	END=111957786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	111957787	.	G	.	.	PASS	END=111957809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	111957810	.	T	.	.	PASS	END=111957825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	111957826	.	T	.	.	PASS	END=111957837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	111957838	.	C	.	.	PASS	END=111957864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	111957865	.	C	.	.	PASS	END=111957874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	111957875	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	111957876	.	G	.	.	PASS	END=111957879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	111957880	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	111957881	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	111957882	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	111957883	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:12:60
chr1	111957884	.	C	.	.	PASS	END=111957885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	111957886	.	C	.	.	LowGQX	END=111957893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	111957894	.	C	.	.	LowGQX	END=111957895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	111957896	.	T	.	.	LowGQX	END=111957897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	111957898	.	C	.	.	LowGQX	END=111957902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	111957903	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:3:60
chr1	111957904	.	C	.	.	LowGQX	END=111957906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	111957907	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	111957908	.	G	.	.	LowGQX	END=111957910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	111957911	.	T	.	.	LowGQX	END=111957913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	111957914	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	111957915	.	G	.	.	LowGQX	END=111957917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	111957918	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	111957919	.	T	.	.	LowGQX	END=111957921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	111957922	.	C	.	.	LowGQX	END=111957923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	111957924	.	G	.	.	LowGQX	END=111957928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	111957929	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	111957930	.	G	.	.	LowGQX	END=111957940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	111957941	.	T	.	.	LowGQX	END=111957945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	111957946	.	G	.	.	LowGQX	END=111957947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	111957948	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	111957949	.	A	.	.	LowGQX	END=111957950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	111957951	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	111957952	.	A	.	.	LowGQX	END=111957953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	111957954	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	111957955	.	T	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	111957956	.	T	.	.	LowGQX	END=111957958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	111957959	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	111957960	.	C	.	.	LowGQX	END=111957961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	111957962	.	G	.	.	LowGQX	END=111957968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	111958943	.	A	.	.	PASS	END=111958981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	111958982	.	G	.	.	PASS	END=111959082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	111962230	.	A	.	.	LowGQX	END=111962350	GT	./.
chr1	111963896	.	A	.	.	PASS	END=111963909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	111963910	.	C	.	.	PASS	END=111963918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	111963919	.	T	.	.	PASS	END=111963935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	111963936	.	T	.	.	PASS	END=111964016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	111964017	.	T	.	.	PASS	END=111964038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:33:60
chr1	111964039	.	C	.	.	PASS	END=111964060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	111964061	.	C	.	.	PASS	END=111964073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	111964074	.	T	.	.	PASS	END=111964085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	111964185	.	A	.	.	PASS	END=111964193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	111964194	.	T	.	.	LowGQX	END=111964196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	111964197	.	G	.	.	PASS	END=111964199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	111964200	.	T	.	.	LowGQX	END=111964202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	111964203	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	111964204	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	111964205	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	111964206	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	111964207	.	G	.	.	PASS	END=111964210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	111964211	.	A	.	.	LowGQX	END=111964231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	111964232	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	111964233	.	C	.	.	LowGQX	END=111964237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	111964238	.	G	.	.	LowGQX	END=111964243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	111964244	.	T	.	.	LowGQX	END=111964254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	111964255	.	C	.	.	LowGQX	END=111964294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	111964295	.	T	.	.	LowGQX	END=111964297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	111965547	.	A	.	.	PASS	END=111965581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:81:60
chr1	111965582	.	A	.	.	PASS	END=111965636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	111965637	.	T	.	.	PASS	END=111965675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:80:60
chr1	111966163	.	A	.	.	LowGQX	END=111966176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	111966177	.	G	.	.	LowGQX	END=111966182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	111966183	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:60
chr1	111966184	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	111966185	.	T	.	45.04	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:15.05:60:15
chr1	111966186	.	C	.	.	LowGQX	END=111966187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	111966188	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:21:60
chr1	111966189	.	C	.	.	LowGQX	END=111966195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	111966196	.	T	.	.	LowGQX	END=111966198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:60
chr1	111966199	.	A	.	.	LowGQX	END=111966207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	111966208	.	C	.	.	LowGQX	END=111966210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:60
chr1	111966211	.	C	.	.	LowGQX	END=111966218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	111966219	.	A	.	.	LowGQX	END=111966222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:60
chr1	111966223	.	T	.	.	LowGQX	END=111966229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	111966230	.	A	.	.	LowGQX	END=111966232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:60
chr1	111966233	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	111966234	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr1	111966235	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	111966236	.	G	.	.	LowGQX	END=111966239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:60
chr1	111966240	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	111966241	.	A	.	.	LowGQX	END=111966242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:60
chr1	111966243	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:60
chr1	111966244	.	C	.	.	LowGQX	END=111966253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	111966254	.	C	.	.	LowGQX	END=111966256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	111966257	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	111966258	.	T	.	.	LowGQX	END=111966261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	111966262	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:9:60
chr1	111966263	.	T	.	.	LowGQX	END=111966276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	111966277	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	111966278	.	C	.	.	LowGQX	END=111966279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	111966280	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	111966281	.	A	.	.	LowGQX	END=111966290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	111966291	.	C	T	72.34	PASS	BaseQRankSum=0.361;DP=9;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.361;QD=8.04;ReadPosRankSum=-1.159;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:5,4:9:99:102,0,142:60:72:0.444
chr1	111966292	.	T	.	.	LowGQX	END=111966318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	111966319	.	A	.	.	LowGQX	END=111966323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	111966324	.	G	.	.	LowGQX	END=111966332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	111968003	.	A	.	.	PASS	END=111968095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:94:60
chr1	111968096	.	T	.	.	PASS	END=111968104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:78:60
chr1	111968105	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:67:60
chr1	111968106	.	G	.	.	PASS	END=111968127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	111969046	.	A	.	.	LowGQX	END=111969047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	111969048	.	T	.	.	LowGQX	END=111969055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	111969056	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	111969057	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	111969058	.	C	.	.	PASS	END=111969078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	111969079	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:0:60
chr1	111969080	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	111969081	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:0:60
chr1	111969082	.	T	.	.	PASS	END=111969084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	111969085	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr1	111969086	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	111969087	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	111969088	.	G	.	.	PASS	END=111969089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	111969090	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	111969091	.	A	.	.	PASS	END=111969099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	111969100	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	111969101	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	111969102	.	C	.	.	LowGQX	END=111969103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	111969104	.	T	.	.	PASS	END=111969105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	111969106	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	111969107	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	111969108	.	G	.	.	LowGQX	END=111969109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	111969110	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	111969111	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	111969112	.	C	.	.	PASS	END=111969117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	111969118	.	A	.	.	PASS	END=111969122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	111969123	.	T	.	.	PASS	END=111969153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	111969154	.	T	.	.	PASS	END=111969165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:60
chr1	111969166	.	G	.	.	PASS	END=111969179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	111969180	.	C	.	.	PASS	END=111969221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	111969222	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:69:60
chr1	111969223	.	T	.	.	PASS	END=111969276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	111969277	.	G	.	.	PASS	END=111969293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:66:60
chr1	111969294	.	A	G	439.93	PASS	BaseQRankSum=1.128;DP=40;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=10.4161;MQ=60;MQ0=0;MQRankSum=0.258;QD=11.00;ReadPosRankSum=1.210;SB=-293.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:18,22:40:99:470,0,416:60:99:0.550
chr1	111969295	.	A	.	.	PASS	END=111969306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	111969307	.	G	C	403.54	PASS	BaseQRankSum=0.507;DP=35;Dels=0.00;FS=1.447;HRun=0;HaplotypeScore=8.5223;MQ=60;MQ0=0;MQRankSum=0.857;QD=11.53;ReadPosRankSum=0.122;SB=-270.65	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:14,20:35:99:434,0,298:60:99:0.588
chr1	111969308	.	G	.	.	PASS	END=111969345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	111969346	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:35:60
chr1	111969347	.	C	.	.	PASS	END=111969353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	111969354	.	A	.	.	PASS	END=111969370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	111969371	.	C	.	.	PASS	END=111969400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	111969401	.	T	.	.	PASS	END=111969404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	111969405	.	A	.	.	PASS	END=111969407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	111969408	.	T	.	.	PASS	END=111969411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	111969412	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	111969413	.	T	.	.	PASS	END=111969424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	111969425	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:1:60
chr1	111969426	.	C	.	.	PASS	END=111969427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	111969428	.	C	.	.	LowGQX	END=111969432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	111969433	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	111969434	.	C	.	.	LowGQX	END=111969444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	111969649	.	C	.	.	PASS	END=111969718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	111969719	.	A	G	1205.40	PASS	BaseQRankSum=-1.916;DP=109;Dels=0.00;FS=1.603;HRun=1;HaplotypeScore=12.3524;MQ=60;MQ0=0;MQRankSum=-0.440;QD=11.06;ReadPosRankSum=-0.477;SB=-770.36	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:51,58:109:99:1235,0,1238:60:99:0.532
chr1	111969720	.	G	.	.	PASS	END=111969748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	111970282	.	T	.	.	PASS	END=111970297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	111970298	.	G	.	.	PASS	END=111970372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	111970373	.	G	.	.	PASS	END=111970381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	111983850	.	A	.	.	LowGQX	END=111983933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111983934	.	A	.	.	LowGQX	END=111984013	GT	./.
chr1	111984645	.	A	.	.	LowGQX	END=111984751	GT	./.
chr1	111985273	.	A	.	.	LowGQX	END=111985385	GT	./.
chr1	111985931	.	A	.	.	LowGQX	END=111986030	GT	./.
chr1	111986467	.	C	.	.	LowGQX	END=111986566	GT	./.
chr1	111986662	.	G	.	.	LowGQX	END=111986761	GT	./.
chr1	111989692	.	G	.	.	LowGQX	END=111989740	GT	./.
chr1	111989741	.	G	.	.	LowGQX	END=111989791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111990055	.	A	.	.	LowGQX	END=111990143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	111990144	.	A	.	.	LowGQX	END=111990200	GT	./.
chr1	111991219	.	G	.	.	LowGQX	END=111991226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111991227	.	G	.	.	LowGQX	.	GT	./.
chr1	111991228	.	G	.	.	LowGQX	END=111991232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111991233	.	T	.	.	LowGQX	.	GT	./.
chr1	111991234	.	G	.	.	LowGQX	END=111991313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111991314	.	T	.	.	LowGQX	END=111991574	GT	./.
chr1	111991628	.	C	.	.	LowGQX	END=111991793	GT	./.
chr1	111991817	.	A	.	.	LowGQX	END=111992205	GT	./.
chr1	111992428	.	C	.	.	LowGQX	END=111992527	GT	./.
chr1	111996831	.	A	.	.	LowGQX	END=111996978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	111996979	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	111996980	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	111998706	.	A	.	.	LowGQX	END=111998873	GT	./.
chr1	111999250	.	A	.	.	LowGQX	END=111999379	GT	./.
chr1	112002077	.	A	.	.	LowGQX	END=112002260	GT	./.
chr1	112003528	.	C	.	.	LowGQX	END=112003627	GT	./.
chr1	112018620	.	A	.	.	LowGQX	END=112018719	GT	./.
chr1	112019405	.	T	.	.	LowGQX	END=112019504	GT	./.
chr1	112019954	.	A	.	.	LowGQX	END=112020053	GT	./.
chr1	112020271	.	A	.	.	LowGQX	END=112020307	GT	./.
chr1	112020308	.	T	.	.	LowGQX	END=112020377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112020378	.	A	.	.	LowGQX	.	GT	./.
chr1	112020379	.	C	.	.	LowGQX	END=112020399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112020603	.	A	.	.	LowGQX	END=112020605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	112020606	.	T	.	.	LowGQX	END=112020625	GT	./.
chr1	112020626	.	T	.	.	LowGQX	END=112020747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112026237	.	G	.	.	PASS	END=112026275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	112026276	.	T	.	.	PASS	END=112026316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	112026317	.	G	.	.	PASS	END=112026394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	112028360	.	A	.	.	PASS	END=112028464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	112029192	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:99:60
chr1	112029193	.	A	G	1430.31	PASS	DP=53;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=10.4161;MQ=60;MQ0=0;QD=26.99;SB=-800.13	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,51:53:99:1463,114,0:60:99:1.000
chr1	112029194	.	A	.	.	PASS	END=112029204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	112029205	.	C	.	.	PASS	END=112029231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	112029232	.	A	.	.	PASS	END=112029291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	112031297	.	A	.	.	PASS	END=112031457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	112031458	.	T	.	.	PASS	END=112031497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	112031498	.	G	.	.	PASS	END=112031531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:283:99:60
chr1	112031532	.	T	.	.	PASS	END=112031608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:326:99:60
chr1	112031609	.	A	.	.	PASS	END=112031638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	112031639	.	C	.	.	PASS	END=112031648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	112032217	.	C	.	.	LowGQX	END=112032218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112032219	.	A	.	.	LowGQX	END=112032220	GT	./.
chr1	112032221	.	G	.	.	LowGQX	END=112032223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112032224	.	T	.	.	LowGQX	.	GT	./.
chr1	112032225	.	G	.	.	LowGQX	END=112032227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112032228	.	T	.	.	LowGQX	.	GT	./.
chr1	112032229	.	G	.	.	LowGQX	END=112032232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112032233	.	T	.	.	LowGQX	.	GT	./.
chr1	112032234	.	A	.	.	LowGQX	END=112032242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112032243	.	T	.	.	LowGQX	.	GT	./.
chr1	112032244	.	C	.	.	LowGQX	END=112032251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112032252	.	T	.	.	LowGQX	.	GT	./.
chr1	112032253	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112032254	.	C	.	.	LowGQX	END=112032255	GT	./.
chr1	112032256	.	T	.	.	LowGQX	END=112032257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112032258	.	A	.	.	LowGQX	.	GT	./.
chr1	112032259	.	C	.	.	LowGQX	END=112032260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112032261	.	G	.	.	LowGQX	.	GT	./.
chr1	112032262	.	A	.	.	LowGQX	END=112032266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112032267	.	C	.	.	LowGQX	END=112032268	GT	./.
chr1	112032269	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112032270	.	G	.	.	LowGQX	.	GT	./.
chr1	112032271	.	A	.	.	LowGQX	END=112032304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112032305	.	T	.	.	LowGQX	.	GT	./.
chr1	112032306	.	C	.	.	LowGQX	END=112032316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112033276	.	A	.	.	PASS	END=112033347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	112033348	.	T	.	.	PASS	END=112033386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	112042570	.	A	.	.	PASS	END=112042616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	112042617	.	A	.	.	PASS	END=112042631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	112042632	.	A	G	6765.50	PASS	DP=239;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=14.3620;MQ=60;MQ0=0;QD=28.31;SB=-3238.74	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,239:239:99:6765,518,0:60:99:1.000
chr1	112042633	.	G	.	.	PASS	END=112042745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	112042746	.	C	.	.	PASS	END=112042786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:281:99:60
chr1	112042787	.	T	G	3774.89	PASS	BaseQRankSum=2.081;DP=314;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=42.8546;MQ=60;MQ0=0;MQRankSum=0.828;QD=12.02;ReadPosRankSum=0.562;SB=-1216.90	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:175,138:314:99:3775,0,4676:60:99:0.441
chr1	112042788	.	A	.	.	PASS	END=112042947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:306:99:60
chr1	112042948	.	C	.	.	PASS	END=112043028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:286:99:60
chr1	112043029	.	T	.	.	PASS	END=112043141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:325:99:60
chr1	112043142	.	C	.	.	PASS	END=112043169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:60
chr1	112043170	.	C	.	.	PASS	END=112043180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	112045625	.	A	.	.	PASS	END=112045647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	112045648	.	A	.	.	PASS	END=112045672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	112045673	.	G	.	.	PASS	END=112045737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr1	112045738	.	A	.	.	PASS	END=112045798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:266:99:60
chr1	112045799	.	C	.	.	PASS	END=112045953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	112045954	.	A	.	.	PASS	END=112045975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	112045976	.	T	.	.	PASS	END=112045978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	112106466	.	A	.	.	PASS	END=112106564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:88:60
chr1	112106565	.	A	.	.	PASS	END=112106576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:92:60
chr1	112233962	.	A	.	.	LowGQX	END=112234061	GT	./.
chr1	112237891	.	A	.	.	LowGQX	END=112238047	GT	./.
chr1	112240042	.	T	.	.	LowGQX	END=112240141	GT	./.
chr1	112245956	.	A	.	.	LowGQX	END=112246100	GT	./.
chr1	112246963	.	A	.	.	LowGQX	END=112247110	GT	./.
chr1	112251765	.	A	.	.	LowGQX	END=112251852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112251853	.	T	.	.	LowGQX	END=112251864	GT	./.
chr1	112265637	.	C	.	.	LowGQX	END=112265669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112265670	.	C	.	.	LowGQX	.	GT	./.
chr1	112265671	.	T	.	.	LowGQX	END=112265674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112265675	.	A	.	.	LowGQX	.	GT	./.
chr1	112265676	.	T	.	.	LowGQX	END=112265736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112265737	.	A	.	.	LowGQX	END=112265796	GT	./.
chr1	112269577	.	C	.	.	LowGQX	END=112269588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112269589	.	T	.	.	LowGQX	.	GT	./.
chr1	112269590	.	T	.	.	LowGQX	END=112269628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112269629	.	T	.	.	LowGQX	.	GT	./.
chr1	112269630	.	G	.	.	LowGQX	END=112269661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112269662	.	G	.	.	LowGQX	END=112270242	GT	./.
chr1	112270243	.	C	.	.	LowGQX	END=112270276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112270277	.	A	.	.	LowGQX	.	GT	./.
chr1	112270278	.	C	.	.	LowGQX	END=112270390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112270391	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	112270392	.	T	.	.	LowGQX	END=112270402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	112270403	.	A	.	.	LowGQX	END=112270414	GT	./.
chr1	112270415	.	C	.	.	LowGQX	END=112270416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112270417	.	T	.	.	LowGQX	.	GT	./.
chr1	112270418	.	C	.	.	LowGQX	END=112270419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112270420	.	T	.	.	LowGQX	END=112270421	GT	./.
chr1	112270422	.	G	.	.	LowGQX	END=112270428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112270429	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	112270430	.	C	.	.	LowGQX	END=112270432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112270433	.	G	.	.	LowGQX	.	GT	./.
chr1	112270434	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112270435	.	G	.	.	LowGQX	.	GT	./.
chr1	112270436	.	A	.	.	LowGQX	END=112270437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112270438	.	A	.	.	LowGQX	.	GT	./.
chr1	112270439	.	G	.	.	LowGQX	END=112270447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112270448	.	T	.	.	LowGQX	.	GT	./.
chr1	112270449	.	G	.	.	LowGQX	END=112270451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112270452	.	G	.	.	LowGQX	.	GT	./.
chr1	112270453	.	C	.	.	LowGQX	END=112270455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112270456	.	A	.	.	LowGQX	.	GT	./.
chr1	112281787	.	C	.	.	LowGQX	END=112281791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112281792	.	C	.	.	LowGQX	.	GT	./.
chr1	112281793	.	C	.	.	LowGQX	END=112281803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112281804	.	T	.	.	LowGQX	END=112281886	GT	./.
chr1	112298279	.	C	.	.	PASS	END=112298297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	112298298	.	C	.	.	PASS	END=112298319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	112298320	.	C	.	.	PASS	END=112298348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	112298349	.	C	.	.	PASS	END=112298373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	112298374	.	T	.	.	PASS	END=112298377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	112298378	.	T	C	2744.89	PASS	BaseQRankSum=-2.768;DP=200;Dels=0.00;FS=0.782;HRun=0;HaplotypeScore=26.6715;MQ=60;MQ0=0;MQRankSum=0.483;QD=13.72;ReadPosRankSum=-0.103;SB=-468.86	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:93,107:200:99:2775,0,2649:60:99:0.535
chr1	112298545	.	C	.	.	PASS	END=112298581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:275:99:60
chr1	112298582	.	A	G	4073.46	PASS	BaseQRankSum=-0.240;DP=275;Dels=0.00;FS=3.289;HRun=1;HaplotypeScore=28.6256;MQ=60;MQ0=0;MQRankSum=0.005;QD=14.81;ReadPosRankSum=-2.005;SB=-1212.84	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:120,154:275:99:4073,0,3149:60:99:0.562
chr1	112298583	.	G	.	.	PASS	END=112298617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	112298618	.	C	.	.	PASS	END=112298661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	112298662	.	T	.	.	PASS	END=112298687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	112298688	.	A	.	.	PASS	END=112298709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	112298710	.	A	.	.	PASS	END=112298761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	112298762	.	G	.	.	PASS	END=112298771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	112298772	.	G	.	.	PASS	END=112298789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	112298790	.	T	.	.	PASS	END=112298791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	112298792	.	C	.	.	PASS	END=112298800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	112298801	.	C	.	.	PASS	END=112298808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	112298809	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:48:60
chr1	112298810	.	G	.	.	PASS	END=112298817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	112298818	.	A	.	.	PASS	END=112298821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	112298822	.	C	.	.	PASS	END=112298828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	112298829	.	T	C	471.72	PASS	DP=14;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=33.69;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,14:14:39.13:505,39,0:60:39:1.000
chr1	112298830	.	T	.	.	PASS	END=112298837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	112298838	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:21:60
chr1	112298839	.	G	.	.	PASS	END=112298843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	112298844	.	C	.	.	LowGQX	END=112298845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	112298846	.	C	.	.	PASS	END=112298848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	112298849	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr1	112299266	.	A	.	.	PASS	END=112299342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	112299343	.	T	.	.	PASS	END=112299365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	112302020	.	A	.	.	PASS	END=112302066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	112302067	.	T	.	.	PASS	END=112302127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:60
chr1	112302128	.	G	.	.	PASS	END=112302192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	112303094	.	A	.	.	PASS	END=112303096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	112303097	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:68:72:60
chr1	112303098	.	A	.	.	PASS	END=112303126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	112303127	.	C	.	.	PASS	END=112303140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	112303141	.	G	.	.	PASS	END=112303212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	112303326	.	A	.	.	PASS	END=112303377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	112303378	.	C	.	.	PASS	END=112303423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	112303424	.	A	.	.	PASS	END=112303472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	112303607	.	A	.	.	PASS	END=112303727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	112303728	.	T	.	.	PASS	END=112303749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	112303828	.	A	.	.	PASS	END=112303919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	112303920	.	T	.	.	PASS	END=112303927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	112304869	.	C	.	.	PASS	END=112304898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	112304899	.	T	.	.	PASS	END=112304955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	112304956	.	T	.	.	PASS	END=112304968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	112305297	.	A	.	.	PASS	END=112305340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	112305341	.	A	.	.	PASS	END=112305379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	112305380	.	C	.	.	PASS	END=112305402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	112305403	.	T	.	.	PASS	END=112305406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	112305406	.	TA	T	308.16	PASS	BaseQRankSum=-1.332;DP=89;FS=0.000;HRun=16;HaplotypeScore=611.5178;MQ=60;MQ0=0;MQRankSum=-1.412;QD=3.46;ReadPosRankSum=-0.006;SB=-146.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:51,20:89:99:347,0,673:60:99:0.282
chr1	112305493	.	A	.	.	PASS	END=112305557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	112305558	.	G	.	.	PASS	END=112305580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	112305581	.	A	.	.	PASS	END=112305631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	112308357	.	A	.	.	PASS	END=112308392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	112308393	.	G	.	.	PASS	END=112308458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	112308459	.	C	.	.	PASS	END=112308525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	112308526	.	G	.	.	PASS	END=112308629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	112308630	.	A	.	.	PASS	END=112308750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	112308751	.	C	.	.	PASS	END=112308892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	112308893	.	A	.	.	PASS	END=112308952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	112308953	.	T	C	6211.81	PASS	BaseQRankSum=-0.781;DP=208;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.4158;MQ=60;MQ0=0;MQRankSum=-0.849;QD=29.86;ReadPosRankSum=0.449;SB=-3167.98	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:3,203:208:99:6212,403,0:60:99:0.985
chr1	112308954	.	T	.	.	PASS	END=112308971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr1	112308972	.	G	A	7210.57	PASS	BaseQRankSum=0.213;DP=236;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=21.0525;MQ=60;MQ0=0;MQRankSum=-0.970;QD=30.55;ReadPosRankSum=0.187;SB=-3668.91	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:3,233:236:99:7211,476,0:60:99:0.987
chr1	112308973	.	T	.	.	PASS	END=112309103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	112309104	.	A	.	.	PASS	END=112309122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:60
chr1	112309123	.	C	A	3315.28	PASS	BaseQRankSum=3.544;DP=238;Dels=0.00;FS=1.674;HRun=0;HaplotypeScore=27.6184;MQ=60;MQ0=0;MQRankSum=0.507;QD=13.93;ReadPosRankSum=0.119;SB=-1517.74	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:115,123:238:99:3315,0,2794:60:99:0.517
chr1	112309124	.	G	.	.	PASS	END=112309330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	112309331	.	T	C	3349.71	PASS	BaseQRankSum=-0.567;DP=228;Dels=0.00;FS=6.800;HRun=0;HaplotypeScore=15.2534;MQ=60;MQ0=0;MQRankSum=0.553;QD=14.69;ReadPosRankSum=1.130;SB=-1589.05	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:109,119:228:99:3350,0,3152:60:99:0.522
chr1	112309332	.	A	.	.	PASS	END=112309521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	112309522	.	T	.	.	PASS	END=112309523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	112318648	.	G	.	.	PASS	END=112318675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	112318676	.	C	.	.	PASS	END=112318705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	112318706	.	G	.	.	PASS	END=112318965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	112318966	.	C	.	.	PASS	END=112318987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	112319597	.	G	.	.	LowGQX	END=112319598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	112319599	.	G	.	.	LowGQX	END=112319639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	112319640	.	C	.	.	LowGQX	END=112319644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	112319645	.	C	.	.	LowGQX	END=112319646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	112319647	.	C	.	.	LowGQX	END=112319651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	112319652	.	T	.	.	LowGQX	END=112319654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	112319655	.	T	.	.	LowGQX	END=112319661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	112319662	.	G	.	.	PASS	END=112319669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	112319670	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:2:60
chr1	112319671	.	A	.	.	PASS	END=112319709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	112319710	.	G	.	.	PASS	END=112319729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	112319730	.	G	.	.	PASS	END=112319791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr1	112319792	.	C	.	.	PASS	END=112319806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chr1	112319807	.	A	.	.	PASS	END=112319813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	112319814	.	G	.	.	PASS	END=112319829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	112319830	.	G	.	.	PASS	END=112319834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	112319835	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr1	112319836	.	C	.	.	PASS	END=112319849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	112319850	.	C	.	.	LowGQX	END=112319851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:1:60
chr1	112319852	.	A	.	.	PASS	END=112319865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	112319866	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	112319867	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	112319868	.	A	.	.	PASS	END=112319884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	112319885	.	A	.	.	LowGQX	END=112319886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	112319887	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	112319888	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	112319889	.	C	.	.	PASS	END=112319890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	112319891	.	T	.	.	LowGQX	END=112319911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	112319912	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	112319913	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	112319914	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	112319915	.	A	.	.	LowGQX	END=112319925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	112319926	.	A	.	.	LowGQX	END=112319933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	112319934	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr1	112319935	.	A	.	.	LowGQX	END=112319941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	112319942	.	A	.	.	LowGQX	END=112319946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	112321007	.	C	.	.	PASS	END=112321031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	112321032	.	T	A	854.14	PASS	BaseQRankSum=0.178;DP=92;Dels=0.00;FS=1.795;HRun=1;HaplotypeScore=3.8404;MQ=60;MQ0=0;MQRankSum=0.194;QD=9.28;ReadPosRankSum=0.979;SB=-541.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:54,38:92:99:884,0,1209:60:99:0.413
chr1	112321033	.	C	.	.	PASS	END=112321102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	112321103	.	A	.	.	PASS	END=112321113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	112321114	.	C	.	.	PASS	END=112321123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	112321124	.	A	.	.	PASS	END=112321136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	112321137	.	A	.	.	PASS	END=112321146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	112321147	.	C	.	.	PASS	END=112321152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	112321153	.	T	.	.	PASS	END=112321165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	112322796	.	A	.	.	PASS	END=112322808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	112322809	.	C	.	.	PASS	END=112322834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	112322835	.	G	.	.	PASS	END=112322873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	112322874	.	G	.	.	PASS	END=112322929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	112322930	.	G	.	.	PASS	END=112322941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	112322942	.	A	.	.	PASS	END=112322947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	112322948	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:54:60
chr1	112322949	.	G	.	.	PASS	END=112322979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	112322980	.	T	.	.	PASS	END=112322985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr1	112322986	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:45:60
chr1	112322987	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:63:60
chr1	112323261	.	A	.	.	PASS	END=112323282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	112323283	.	T	.	.	PASS	END=112323297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	112323298	.	C	.	.	PASS	END=112323351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	112323352	.	C	.	.	PASS	END=112323434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	112323435	.	A	.	.	PASS	END=112323458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	112323459	.	A	.	.	PASS	END=112323464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	112329515	.	G	.	.	PASS	END=112329516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	112329517	.	T	.	.	PASS	END=112329519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:63:60
chr1	112329520	.	C	.	.	PASS	END=112329524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	112329525	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:48:60
chr1	112329526	.	T	.	.	PASS	END=112329536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr1	112329537	.	G	.	.	PASS	END=112329550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:84:60
chr1	112329551	.	G	T	891.89	PASS	BaseQRankSum=-0.502;DP=66;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=26.5665;MQ=60;MQ0=0;MQRankSum=-0.225;QD=13.51;ReadPosRankSum=-0.198;SB=-259.49	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:25,41:66:99:922,0,558:60:99:0.621
chr1	112329552	.	C	.	.	PASS	END=112329587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	112329588	.	G	.	.	PASS	END=112329656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	112329657	.	A	.	.	PASS	END=112329665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	112329666	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:67:60
chr1	112329667	.	T	.	.	PASS	END=112329681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	112329682	.	A	.	.	PASS	END=112329718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	112329719	.	G	.	.	PASS	END=112329733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	112329734	.	A	.	.	PASS	END=112329759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	112329760	.	A	.	.	PASS	END=112329762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	112329763	.	G	.	.	PASS	END=112329768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	112329769	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:15:60
chr1	112329770	.	A	.	.	PASS	END=112329775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	112329776	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:48:60
chr1	112329777	.	A	.	.	PASS	END=112329779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	112524192	.	C	.	.	PASS	END=112524199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	112524200	.	C	.	.	PASS	END=112524205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	112524206	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:60:60
chr1	112524207	.	C	.	.	PASS	END=112524229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	112524230	.	A	.	.	PASS	END=112524235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	112524236	.	G	.	.	PASS	END=112524256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	112524257	.	G	.	.	PASS	END=112524274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	112524275	.	A	.	.	PASS	END=112524346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	112524347	.	G	.	.	PASS	END=112524436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	112524437	.	G	.	.	PASS	END=112524494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	112524495	.	G	.	.	PASS	END=112524536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	112524537	.	T	.	.	PASS	END=112524689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr1	112524690	.	T	.	.	PASS	END=112524786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	112524787	.	C	.	.	PASS	END=112524941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:264:99:60
chr1	112524942	.	T	.	.	PASS	END=112524960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	112524961	.	C	.	.	PASS	END=112525012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	112525013	.	A	.	.	PASS	END=112525040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	112525041	.	A	.	.	PASS	END=112525079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	112525080	.	A	.	.	PASS	END=112525084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	112525085	.	G	A	1364.40	PASS	BaseQRankSum=0.905;DP=87;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=19.2016;MQ=60;MQ0=0;MQRankSum=-0.792;QD=15.68;ReadPosRankSum=0.446;SB=-397.46	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:40,46:87:99:1394,0,945:60:99:0.535
chr1	112525086	.	G	.	.	PASS	END=112525118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	112525119	.	T	.	.	PASS	END=112525255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	112525256	.	C	.	.	PASS	END=112525310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	112525311	.	C	.	.	PASS	END=112525338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:60
chr1	112525339	.	C	.	.	PASS	END=112525361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	112525362	.	C	.	.	PASS	END=112525371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	112525372	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:51:60
chr1	112525373	.	A	.	.	PASS	END=112525392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:72:60
chr1	112525393	.	C	.	.	PASS	END=112525399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr1	112533519	.	A	.	.	LowGQX	END=112533687	GT	./.
chr1	112533688	.	C	.	.	LowGQX	END=112533690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112533691	.	C	.	.	LowGQX	.	GT	./.
chr1	112533692	.	A	.	.	LowGQX	END=112533724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112533725	.	G	.	.	LowGQX	.	GT	./.
chr1	112533726	.	G	.	.	LowGQX	END=112533727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112533728	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	112533729	.	C	.	.	LowGQX	END=112533737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112533738	.	C	.	.	LowGQX	.	GT	./.
chr1	112533739	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112533740	.	A	.	.	LowGQX	.	GT	./.
chr1	112533741	.	G	.	.	LowGQX	END=112533804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112533805	.	G	.	.	LowGQX	.	GT	./.
chr1	112533806	.	A	.	.	LowGQX	END=112533809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	112539043	.	T	.	.	LowGQX	END=112539142	GT	./.
chr1	112958736	.	A	.	.	LowGQX	END=112958888	GT	./.
chr1	112991562	.	A	.	.	LowGQX	END=112991796	GT	./.
chr1	112997069	.	A	.	.	LowGQX	END=112997180	GT	./.
chr1	112998551	.	A	.	.	LowGQX	END=112999746	GT	./.
chr1	112999747	.	G	.	.	LowGQX	END=112999817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112999818	.	C	.	.	LowGQX	.	GT	./.
chr1	112999819	.	C	.	.	LowGQX	END=112999860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112999861	.	C	.	.	LowGQX	.	GT	./.
chr1	112999862	.	C	.	.	LowGQX	END=112999933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	112999934	.	C	.	.	LowGQX	END=113000036	GT	./.
chr1	113010137	.	T	.	.	LowGQX	END=113010236	GT	./.
chr1	113033619	.	T	.	.	LowGQX	END=113033718	GT	./.
chr1	113051863	.	C	.	.	LowGQX	END=113052082	GT	./.
chr1	113057494	.	A	.	.	LowGQX	END=113057679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113057680	.	C	.	.	LowGQX	END=113057718	GT	./.
chr1	113058760	.	A	.	.	LowGQX	END=113059041	GT	./.
chr1	113059741	.	A	.	.	LowGQX	END=113059851	GT	./.
chr1	113059852	.	A	.	.	LowGQX	END=113059913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113059914	.	A	.	.	LowGQX	.	GT	./.
chr1	113059915	.	C	.	.	LowGQX	END=113059926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113059927	.	A	.	.	LowGQX	.	GT	./.
chr1	113059928	.	A	.	.	LowGQX	END=113059953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113059954	.	A	.	.	LowGQX	.	GT	./.
chr1	113059955	.	T	.	.	LowGQX	END=113059969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113059970	.	C	.	.	LowGQX	.	GT	./.
chr1	113059971	.	A	.	.	LowGQX	END=113059990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113059991	.	C	.	.	LowGQX	.	GT	./.
chr1	113059992	.	T	.	.	LowGQX	END=113060001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113060002	.	C	.	.	LowGQX	END=113060009	GT	./.
chr1	113062900	.	A	.	.	LowGQX	END=113063133	GT	./.
chr1	113068633	.	G	.	.	LowGQX	END=113068735	GT	./.
chr1	113083425	.	G	.	.	LowGQX	END=113083524	GT	./.
chr1	113084532	.	T	.	.	LowGQX	END=113084714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113093220	.	T	.	.	LowGQX	END=113093319	GT	./.
chr1	113098488	.	A	.	.	LowGQX	END=113098642	GT	./.
chr1	113113308	.	A	.	.	LowGQX	END=113113407	GT	./.
chr1	113113885	.	A	.	.	LowGQX	END=113113984	GT	./.
chr1	113119606	.	A	.	.	LowGQX	END=113119685	GT	./.
chr1	113119686	.	T	.	.	LowGQX	END=113119712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113120954	.	T	.	.	LowGQX	END=113121053	GT	./.
chr1	113124562	.	T	.	.	LowGQX	END=113124730	GT	./.
chr1	113124995	.	A	.	.	LowGQX	END=113125096	GT	./.
chr1	113126592	.	A	.	.	LowGQX	END=113126656	GT	./.
chr1	113126657	.	C	.	.	LowGQX	END=113126732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	113126733	.	A	.	.	LowGQX	END=113126750	GT	./.
chr1	113134085	.	T	.	.	LowGQX	END=113134087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134088	.	A	.	.	LowGQX	.	GT	./.
chr1	113134089	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134090	.	A	.	.	LowGQX	.	GT	./.
chr1	113134091	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134092	.	C	.	.	LowGQX	.	GT	./.
chr1	113134093	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134094	.	T	.	.	LowGQX	.	GT	./.
chr1	113134095	.	T	.	.	LowGQX	END=113134097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134098	.	C	.	.	LowGQX	.	GT	./.
chr1	113134099	.	C	.	.	LowGQX	END=113134101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134102	.	G	.	.	LowGQX	END=113134104	GT	./.
chr1	113134105	.	T	.	.	LowGQX	END=113134106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134107	.	C	.	.	LowGQX	END=113134108	GT	./.
chr1	113134109	.	T	.	.	LowGQX	END=113134117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134118	.	A	.	.	LowGQX	.	GT	./.
chr1	113134119	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134120	.	T	.	.	LowGQX	END=113134121	GT	./.
chr1	113134122	.	T	.	.	LowGQX	END=113134123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134124	.	T	.	.	LowGQX	.	GT	./.
chr1	113134125	.	T	.	.	LowGQX	END=113134132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134133	.	T	.	.	LowGQX	.	GT	./.
chr1	113134134	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134135	.	T	.	.	LowGQX	.	GT	./.
chr1	113134136	.	T	.	.	LowGQX	END=113134137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134138	.	C	.	.	LowGQX	.	GT	./.
chr1	113134139	.	A	.	.	LowGQX	END=113134143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134144	.	T	.	.	LowGQX	.	GT	./.
chr1	113134145	.	A	.	.	LowGQX	END=113134147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134148	.	C	.	.	LowGQX	.	GT	./.
chr1	113134149	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134150	.	T	.	.	LowGQX	.	GT	./.
chr1	113134151	.	T	.	.	LowGQX	END=113134153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134154	.	T	.	.	LowGQX	.	GT	./.
chr1	113134155	.	T	.	.	LowGQX	END=113134156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134157	.	A	.	.	LowGQX	.	GT	./.
chr1	113134158	.	T	.	.	LowGQX	END=113134160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134161	.	T	.	.	LowGQX	.	GT	./.
chr1	113134162	.	A	.	.	LowGQX	END=113134174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134175	.	C	.	.	LowGQX	.	GT	./.
chr1	113134176	.	T	.	.	LowGQX	END=113134181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134182	.	G	.	.	LowGQX	.	GT	./.
chr1	113134183	.	A	.	.	LowGQX	END=113134190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134191	.	T	.	.	LowGQX	.	GT	./.
chr1	113134192	.	G	.	.	LowGQX	END=113134195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134196	.	G	.	.	LowGQX	END=113134197	GT	./.
chr1	113134198	.	T	.	.	LowGQX	END=113134210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134211	.	A	.	.	LowGQX	.	GT	./.
chr1	113134212	.	A	.	.	LowGQX	END=113134214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134215	.	C	.	.	LowGQX	.	GT	./.
chr1	113134216	.	T	.	.	LowGQX	END=113134219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134220	.	G	.	.	LowGQX	.	GT	./.
chr1	113134221	.	C	.	.	LowGQX	END=113134226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113134227	.	T	.	.	LowGQX	END=113134236	GT	./.
chr1	113140591	.	A	.	.	LowGQX	END=113140710	GT	./.
chr1	113143334	.	A	.	.	LowGQX	END=113143493	GT	./.
chr1	113153461	.	A	.	.	LowGQX	END=113153606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113153607	.	A	.	.	LowGQX	END=113153627	GT	./.
chr1	113159373	.	A	.	.	LowGQX	END=113159526	GT	./.
chr1	113160597	.	A	.	.	LowGQX	END=113160696	GT	./.
chr1	113161529	.	A	.	.	LowGQX	END=113161636	GT	./.
chr1	113161637	.	C	.	.	LowGQX	END=113161664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113161665	.	T	.	.	LowGQX	.	GT	./.
chr1	113161666	.	T	.	.	LowGQX	END=113161673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113161674	.	G	.	.	LowGQX	.	GT	./.
chr1	113161675	.	G	.	.	LowGQX	END=113161676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113161677	.	A	.	.	LowGQX	.	GT	./.
chr1	113161678	.	C	.	.	LowGQX	END=113161679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113161680	.	G	.	.	LowGQX	END=113161681	GT	./.
chr1	113161682	.	T	.	.	LowGQX	END=113161694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113161695	.	C	.	.	LowGQX	.	GT	./.
chr1	113161696	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113161697	.	A	.	.	LowGQX	.	GT	./.
chr1	113161698	.	A	.	.	LowGQX	END=113161710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113161711	.	C	.	.	LowGQX	END=113161712	GT	./.
chr1	113161713	.	C	.	.	LowGQX	END=113161715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113161716	.	A	.	.	LowGQX	.	GT	./.
chr1	113161717	.	C	.	.	LowGQX	END=113161725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113161726	.	G	.	.	LowGQX	.	GT	./.
chr1	113161727	.	G	.	.	LowGQX	END=113161737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113162437	.	C	.	.	LowGQX	END=113162536	GT	./.
chr1	113189814	.	A	.	.	LowGQX	END=113189913	GT	./.
chr1	113192016	.	C	.	.	LowGQX	END=113192167	GT	./.
chr1	113196148	.	T	.	.	LowGQX	END=113196301	GT	./.
chr1	113197085	.	A	.	.	LowGQX	END=113197233	GT	./.
chr1	113197234	.	T	.	.	LowGQX	END=113197295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113201634	.	C	.	.	LowGQX	END=113201733	GT	./.
chr1	113202313	.	G	.	.	LowGQX	END=113202412	GT	./.
chr1	113209682	.	A	.	.	LowGQX	END=113209781	GT	./.
chr1	113212093	.	C	.	.	LowGQX	END=113212246	GT	./.
chr1	113212612	.	A	.	.	LowGQX	END=113212756	GT	./.
chr1	113217502	.	G	.	.	LowGQX	END=113217503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113217504	.	C	.	.	LowGQX	.	GT	./.
chr1	113217505	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113217506	.	C	.	.	LowGQX	END=113217508	GT	./.
chr1	113217509	.	C	.	.	LowGQX	END=113217513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113217514	.	T	.	.	LowGQX	END=113217517	GT	./.
chr1	113217518	.	C	.	.	LowGQX	END=113217520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113217521	.	C	.	.	LowGQX	.	GT	./.
chr1	113217522	.	A	.	.	LowGQX	END=113217526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113217527	.	C	.	.	LowGQX	.	GT	./.
chr1	113217528	.	C	.	.	LowGQX	END=113217534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113217535	.	A	.	.	LowGQX	.	GT	./.
chr1	113217536	.	T	.	.	LowGQX	END=113217539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113217540	.	C	.	.	LowGQX	.	GT	./.
chr1	113217541	.	A	.	.	LowGQX	END=113217544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113217545	.	A	.	.	LowGQX	.	GT	./.
chr1	113217546	.	G	.	.	LowGQX	END=113217562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113217563	.	T	.	.	LowGQX	.	GT	./.
chr1	113217564	.	C	.	.	LowGQX	END=113217587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113217588	.	G	.	.	LowGQX	END=113217712	GT	./.
chr1	113229555	.	G	.	.	LowGQX	END=113229654	GT	./.
chr1	113231555	.	A	.	.	LowGQX	END=113231762	GT	./.
chr1	113232035	.	A	.	.	LowGQX	END=113232274	GT	./.
chr1	113232460	.	A	.	.	LowGQX	END=113232722	GT	./.
chr1	113234285	.	A	.	.	LowGQX	END=113234322	GT	./.
chr1	113234323	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113234324	.	G	.	.	LowGQX	.	GT	./.
chr1	113234325	.	G	.	.	LowGQX	END=113234337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113234338	.	A	.	.	LowGQX	.	GT	./.
chr1	113234339	.	C	.	.	LowGQX	END=113234344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113234345	.	C	.	.	LowGQX	END=113234346	GT	./.
chr1	113234347	.	C	.	.	LowGQX	END=113234350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113234351	.	A	.	.	LowGQX	.	GT	./.
chr1	113234352	.	G	.	.	LowGQX	END=113234367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113234368	.	G	.	.	LowGQX	.	GT	./.
chr1	113234369	.	C	.	.	LowGQX	END=113234384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113234385	.	G	.	.	LowGQX	.	GT	./.
chr1	113234386	.	T	.	.	LowGQX	END=113234387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113234388	.	T	.	.	LowGQX	.	GT	./.
chr1	113234389	.	C	.	.	LowGQX	END=113234423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235381	.	A	.	.	LowGQX	END=113235382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235383	.	G	.	.	LowGQX	END=113235384	GT	./.
chr1	113235385	.	C	.	.	LowGQX	END=113235387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235388	.	A	.	.	LowGQX	.	GT	./.
chr1	113235389	.	G	.	.	LowGQX	END=113235396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235397	.	C	.	.	LowGQX	END=113235398	GT	./.
chr1	113235399	.	G	.	.	LowGQX	END=113235407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235408	.	T	.	.	LowGQX	.	GT	./.
chr1	113235409	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235410	.	G	.	.	LowGQX	END=113235411	GT	./.
chr1	113235412	.	G	.	.	LowGQX	END=113235413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235414	.	A	.	.	LowGQX	END=113235415	GT	./.
chr1	113235416	.	C	.	.	LowGQX	END=113235417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235418	.	A	.	.	LowGQX	.	GT	./.
chr1	113235419	.	T	.	.	LowGQX	END=113235432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235433	.	G	.	.	LowGQX	END=113235434	GT	./.
chr1	113235435	.	C	.	.	LowGQX	END=113235465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235466	.	A	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	113235467	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235468	.	C	.	.	LowGQX	.	GT	./.
chr1	113235469	.	A	.	.	LowGQX	END=113235477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235478	.	G	.	.	LowGQX	.	GT	./.
chr1	113235479	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235480	.	C	.	.	LowGQX	.	GT	./.
chr1	113235481	.	A	.	.	LowGQX	END=113235489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235490	.	T	.	.	LowGQX	END=113235491	GT	./.
chr1	113235492	.	G	.	.	LowGQX	END=113235495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235496	.	C	.	.	LowGQX	.	GT	./.
chr1	113235497	.	G	.	.	LowGQX	END=113235499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235500	.	G	.	.	LowGQX	.	GT	./.
chr1	113235501	.	C	.	.	LowGQX	END=113235512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235513	.	G	.	.	LowGQX	END=113235514	GT	./.
chr1	113235515	.	C	.	.	LowGQX	END=113235517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235518	.	T	.	.	LowGQX	.	GT	./.
chr1	113235519	.	G	.	.	LowGQX	END=113235520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235521	.	G	.	.	LowGQX	.	GT	./.
chr1	113235522	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235523	.	A	.	.	LowGQX	.	GT	./.
chr1	113235524	.	C	.	.	LowGQX	END=113235527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235528	.	A	.	.	LowGQX	.	GT	./.
chr1	113235529	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235530	.	C	.	.	LowGQX	END=113235531	GT	./.
chr1	113235532	.	C	.	.	LowGQX	END=113235534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235535	.	G	.	.	LowGQX	END=113235536	GT	./.
chr1	113235537	.	C	.	.	LowGQX	END=113235541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113235542	.	C	.	.	LowGQX	END=113235546	GT	./.
chr1	113235547	.	T	.	.	LowGQX	END=113235551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	113235552	.	G	.	.	LowGQX	.	GT	./.
chr1	113235553	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	113236638	.	A	.	.	LowGQX	END=113236796	GT	./.
chr1	113237053	.	T	.	.	LowGQX	END=113237253	GT	./.
chr1	113237369	.	A	.	.	LowGQX	END=113237516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113237517	.	A	.	.	LowGQX	END=113237520	GT	./.
chr1	113238036	.	A	.	.	LowGQX	END=113238080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113238081	.	C	.	.	LowGQX	END=113238198	GT	./.
chr1	113238768	.	A	.	.	LowGQX	END=113238919	GT	./.
chr1	113239057	.	A	.	.	LowGQX	END=113239158	GT	./.
chr1	113239250	.	A	.	.	LowGQX	END=113239393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113239394	.	C	.	.	LowGQX	END=113239470	GT	./.
chr1	113240614	.	A	.	.	LowGQX	END=113240735	GT	./.
chr1	113240907	.	A	.	.	LowGQX	END=113241102	GT	./.
chr1	113241325	.	C	.	.	LowGQX	END=113241424	GT	./.
chr1	113242305	.	A	.	.	LowGQX	END=113242434	GT	./.
chr1	113242511	.	T	.	.	LowGQX	END=113242610	GT	./.
chr1	113242839	.	A	.	.	LowGQX	END=113242964	GT	./.
chr1	113243034	.	C	.	.	LowGQX	END=113243133	GT	./.
chr1	113243162	.	A	.	.	LowGQX	END=113243257	GT	./.
chr1	113243258	.	T	.	.	LowGQX	END=113243361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113244082	.	C	.	.	LowGQX	END=113244337	GT	./.
chr1	113245183	.	A	.	.	LowGQX	END=113245283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113245284	.	C	.	.	LowGQX	END=113245317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	113245619	.	A	.	.	LowGQX	END=113245743	GT	./.
chr1	113246009	.	C	.	.	LowGQX	END=113246108	GT	./.
chr1	113246264	.	A	.	.	LowGQX	END=113246428	GT	./.
chr1	113247707	.	G	.	.	LowGQX	END=113247712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113247713	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	113247714	.	G	.	.	LowGQX	END=113247719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113247720	.	A	.	.	LowGQX	.	GT	./.
chr1	113247721	.	C	.	.	LowGQX	END=113247755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113247756	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	113247757	.	G	.	.	LowGQX	END=113247782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	113247783	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	113247784	.	G	.	.	LowGQX	END=113247806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	113248195	.	A	.	.	LowGQX	END=113248294	GT	./.
chr1	113252752	.	G	.	.	LowGQX	END=113252962	GT	./.
chr1	113253080	.	A	.	.	LowGQX	END=113253235	GT	./.
chr1	113253364	.	A	.	.	LowGQX	END=113253415	GT	./.
chr1	113253416	.	C	.	.	LowGQX	END=113253460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253461	.	C	.	.	LowGQX	.	GT	./.
chr1	113253462	.	C	.	.	LowGQX	END=113253465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253466	.	A	.	.	LowGQX	.	GT	./.
chr1	113253467	.	C	.	.	LowGQX	END=113253473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253474	.	C	.	.	LowGQX	.	GT	./.
chr1	113253475	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253612	.	C	.	.	LowGQX	END=113253711	GT	./.
chr1	113253886	.	A	.	.	LowGQX	END=113253895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	113253896	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	113253897	.	A	.	.	LowGQX	END=113253908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	113253909	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	113253910	.	G	.	.	LowGQX	END=113253915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	113253916	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	113253917	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	113253918	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	113253919	.	T	.	.	LowGQX	END=113253927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253928	.	C	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	113253929	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253930	.	A	.	.	LowGQX	.	GT	./.
chr1	113253931	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253932	.	C	.	.	LowGQX	END=113253933	GT	./.
chr1	113253934	.	C	.	.	LowGQX	END=113253935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253936	.	T	.	.	LowGQX	.	GT	./.
chr1	113253937	.	T	.	.	LowGQX	END=113253939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253940	.	G	.	.	LowGQX	END=113253941	GT	./.
chr1	113253942	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253943	.	G	.	.	LowGQX	END=113253945	GT	./.
chr1	113253946	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253947	.	T	.	.	LowGQX	.	GT	./.
chr1	113253948	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253949	.	T	.	.	LowGQX	.	GT	./.
chr1	113253950	.	G	.	.	LowGQX	END=113253953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253954	.	G	.	.	LowGQX	END=113253955	GT	./.
chr1	113253956	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253957	.	A	.	.	LowGQX	END=113253959	GT	./.
chr1	113253960	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253961	.	C	.	.	LowGQX	.	GT	./.
chr1	113253962	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253963	.	A	.	.	LowGQX	END=113253964	GT	./.
chr1	113253965	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253966	.	T	.	.	LowGQX	.	GT	./.
chr1	113253967	.	G	.	.	LowGQX	END=113253969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253970	.	T	.	.	LowGQX	.	GT	./.
chr1	113253971	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253972	.	A	.	.	LowGQX	END=113253975	GT	./.
chr1	113253976	.	C	.	.	LowGQX	END=113253977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253978	.	C	.	.	LowGQX	END=113253982	GT	./.
chr1	113253983	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253984	.	A	.	.	LowGQX	.	GT	./.
chr1	113253985	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113253986	.	C	.	.	LowGQX	END=113254008	GT	./.
chr1	113254586	.	T	.	.	LowGQX	END=113254685	GT	./.
chr1	113254965	.	A	.	.	LowGQX	END=113255057	GT	./.
chr1	113255058	.	G	.	.	LowGQX	END=113255067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113255068	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	113255069	.	A	.	.	LowGQX	END=113255081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113255364	.	A	.	.	LowGQX	END=113255388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113255389	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	113255390	.	G	.	.	LowGQX	END=113255416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113255417	.	C	.	.	LowGQX	END=113255655	GT	./.
chr1	113256117	.	A	.	.	LowGQX	END=113256235	GT	./.
chr1	113257596	.	A	.	.	LowGQX	END=113257616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113257617	.	A	.	.	LowGQX	.	GT	./.
chr1	113257618	.	G	.	.	LowGQX	END=113257621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113257622	.	A	.	.	LowGQX	.	GT	./.
chr1	113257623	.	G	.	.	LowGQX	END=113257627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113257628	.	C	.	.	LowGQX	END=113257695	GT	./.
chr1	113257696	.	G	.	.	LowGQX	END=113257711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113257712	.	G	.	.	LowGQX	END=113257713	GT	./.
chr1	113257714	.	C	.	.	LowGQX	END=113257727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113257728	.	T	.	.	LowGQX	.	GT	./.
chr1	113257729	.	C	.	.	LowGQX	END=113257757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113257758	.	T	.	.	LowGQX	.	GT	./.
chr1	113257759	.	C	.	.	LowGQX	END=113257777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113257778	.	T	.	.	LowGQX	.	GT	./.
chr1	113257779	.	T	.	.	LowGQX	END=113257835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113257836	.	T	.	.	LowGQX	.	GT	./.
chr1	113257837	.	G	.	.	LowGQX	END=113257843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113257844	.	T	.	.	LowGQX	.	GT	./.
chr1	113257845	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113257846	.	C	.	.	LowGQX	END=113257925	GT	./.
chr1	113264854	.	G	.	.	LowGQX	END=113264972	GT	./.
chr1	113265636	.	A	.	.	LowGQX	END=113265789	GT	./.
chr1	113266555	.	C	.	.	LowGQX	END=113266600	GT	./.
chr1	113266601	.	C	.	.	LowGQX	END=113266639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113266640	.	A	.	.	LowGQX	.	GT	./.
chr1	113266641	.	T	.	.	LowGQX	END=113266730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113266731	.	G	T	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:33,0,30:60:5:0.500
chr1	113266732	.	C	.	.	LowGQX	END=113266761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	113269227	.	C	.	.	LowGQX	END=113269326	GT	./.
chr1	113456462	.	T	.	.	PASS	END=113456468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr1	113456469	.	T	.	.	PASS	END=113456474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	113456475	.	G	.	.	PASS	END=113456509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:98:60
chr1	113456510	.	G	.	.	PASS	END=113456531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	113456532	.	T	.	.	PASS	END=113456545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	113456546	.	A	T	3155.05	PASS	DP=95;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=12.4154;MQ=60;MQ0=0;QD=33.21;SB=-157.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,94:95:99:3188,250,0:60:99:1.000
chr1	113456547	.	T	.	.	PASS	END=113456604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	113456605	.	C	.	.	PASS	END=113456609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	113456610	.	T	.	.	PASS	END=113456710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	113456711	.	G	.	.	PASS	END=113456755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	113456756	.	T	.	.	PASS	END=113456759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	113456760	.	T	.	.	PASS	END=113456771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	113456772	.	A	.	.	PASS	END=113456774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	113456775	.	T	.	.	PASS	END=113456783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	113456784	.	C	.	.	PASS	END=113456802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	113456803	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:72:60
chr1	113456804	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:50:60
chr1	113456805	.	C	.	.	PASS	END=113456813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	113456814	.	T	.	.	PASS	END=113456824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	113456825	.	A	.	.	PASS	END=113456838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	113459717	.	A	.	.	PASS	END=113459745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	113459746	.	A	.	.	PASS	END=113459751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:60
chr1	113459752	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:15:60
chr1	113459753	.	A	.	.	PASS	END=113459775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	113459776	.	C	.	.	PASS	END=113459785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	113459786	.	G	.	.	PASS	END=113459797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	113459798	.	A	.	.	PASS	END=113459820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	113459821	.	G	.	.	PASS	END=113459832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	113459833	.	A	.	.	PASS	END=113459848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	113459849	.	C	.	.	PASS	END=113459869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	113459870	.	C	.	.	PASS	END=113459907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	113459908	.	A	.	.	PASS	END=113459993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:260:99:60
chr1	113459994	.	A	.	.	PASS	END=113460116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:343:99:60
chr1	113460117	.	A	.	.	PASS	END=113460237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:359:99:60
chr1	113460238	.	A	.	.	PASS	END=113460317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:278:99:60
chr1	113460318	.	T	.	.	PASS	END=113460392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr1	113460393	.	G	.	.	PASS	END=113460436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	113460437	.	T	.	.	PASS	END=113460471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	113460472	.	G	.	.	PASS	END=113460495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	113460496	.	A	.	.	PASS	END=113460545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	113460546	.	A	.	.	PASS	END=113460555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	113460556	.	G	.	.	PASS	END=113460562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	113460563	.	A	.	.	PASS	END=113460567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr1	113460568	.	T	.	.	PASS	END=113460581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	113460582	.	A	.	.	PASS	END=113460588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	113460589	.	T	.	.	PASS	END=113460592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	113460593	.	C	.	.	PASS	END=113460607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	113460608	.	G	.	.	PASS	END=113460615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	113460616	.	A	.	.	PASS	END=113460619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	113460620	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	113460621	.	C	.	.	PASS	END=113460623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	113460624	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	113460625	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	113460626	.	C	.	.	LowGQX	END=113460633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	113460634	.	G	.	.	LowGQX	END=113460638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	113460639	.	G	.	.	LowGQX	END=113460640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	113460641	.	A	.	.	LowGQX	END=113460642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	113460643	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	113460644	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:60
chr1	113460645	.	A	.	.	LowGQX	END=113460668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	113460669	.	G	.	.	LowGQX	END=113460675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	113460676	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	113460677	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:2:6.02:60:6
chr1	113460678	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:2:6.02:60:6
chr1	113460679	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:2:6.02:60:6
chr1	113460680	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:2:6.02:60:6
chr1	113460681	.	A	.	.	LowGQX	END=113460682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	113460683	.	T	G	36.43	SB	BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=12.14;ReadPosRankSum=-0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:30.29:66,0,30:60:30:0.667
chr1	113460684	.	A	.	.	LowGQX	END=113460686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	113460687	.	T	.	5.68	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr1	113460688	.	A	.	.	LowGQX	END=113460717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	113464561	.	A	.	.	PASS	END=113464570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	113464571	.	G	.	.	PASS	END=113464572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	113464573	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:18:60
chr1	113464574	.	A	.	.	PASS	END=113464590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	113464591	.	A	.	.	PASS	END=113464601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	113464602	.	A	.	.	PASS	END=113464613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	113464614	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:57:60
chr1	113464615	.	C	.	.	PASS	END=113464632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr1	113464633	.	C	.	.	PASS	END=113464647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	113464648	.	C	.	.	PASS	END=113464685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	113464686	.	G	.	.	PASS	END=113464721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	113464722	.	C	.	.	PASS	END=113464732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	113464733	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:72:69:60
chr1	113464734	.	A	.	.	PASS	END=113464762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	113464763	.	A	.	.	PASS	END=113464788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	113464789	.	G	.	.	PASS	END=113464792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	113464793	.	C	.	.	PASS	END=113464795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	113464796	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:53:60
chr1	113464797	.	T	.	.	PASS	END=113464806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	113471663	.	A	.	.	PASS	END=113471664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	113471665	.	T	.	.	PASS	END=113471667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	113471668	.	G	.	.	PASS	END=113471669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	113471670	.	C	.	.	PASS	END=113471672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	113471673	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:60
chr1	113471674	.	T	.	.	PASS	END=113471680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	113471681	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	113471682	.	A	.	.	PASS	END=113471690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	113471691	.	A	.	.	PASS	END=113471692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	113471693	.	C	.	.	PASS	END=113471694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	113471695	.	G	.	.	PASS	END=113471696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	113471697	.	C	.	.	PASS	END=113471710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	113471711	.	T	.	.	PASS	END=113471720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	113471721	.	A	.	.	PASS	END=113471734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	113471735	.	A	.	.	PASS	END=113471750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	113471751	.	C	.	.	PASS	END=113471857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	113471858	.	C	.	.	PASS	END=113471884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	113471885	.	C	.	.	PASS	END=113471894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	113471895	.	G	.	.	PASS	END=113471906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	113471907	.	T	.	.	PASS	END=113471943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	113471944	.	A	.	.	PASS	END=113471962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	113471963	.	A	.	.	PASS	END=113471980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	113471981	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:45:60
chr1	113616027	.	A	.	.	LowGQX	END=113616075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113616076	.	T	.	.	LowGQX	END=113616077	GT	./.
chr1	113616078	.	G	.	.	LowGQX	END=113616124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113616125	.	C	.	.	LowGQX	END=113616209	GT	./.
chr1	113616210	.	T	.	.	LowGQX	END=113616251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113616252	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	113616253	.	C	.	.	LowGQX	END=113616269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113633923	.	A	.	.	LowGQX	END=113634022	GT	./.
chr1	113635756	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635757	.	G	.	.	LowGQX	END=113635758	GT	./.
chr1	113635759	.	C	.	.	LowGQX	END=113635763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635764	.	G	.	.	LowGQX	END=113635765	GT	./.
chr1	113635766	.	T	.	.	LowGQX	END=113635772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635773	.	C	.	.	LowGQX	END=113635775	GT	./.
chr1	113635776	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635777	.	A	.	.	LowGQX	END=113635779	GT	./.
chr1	113635780	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635781	.	A	.	.	LowGQX	END=113635782	GT	./.
chr1	113635783	.	T	.	.	LowGQX	END=113635787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635788	.	C	.	.	LowGQX	END=113635789	GT	./.
chr1	113635790	.	C	.	.	LowGQX	END=113635791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635792	.	C	.	.	LowGQX	END=113635794	GT	./.
chr1	113635795	.	T	.	.	LowGQX	END=113635796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635797	.	A	.	.	LowGQX	END=113635798	GT	./.
chr1	113635799	.	C	.	.	LowGQX	END=113635803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635804	.	A	.	.	LowGQX	.	GT	./.
chr1	113635805	.	A	.	.	LowGQX	END=113635807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635808	.	C	.	.	LowGQX	.	GT	./.
chr1	113635809	.	T	.	.	LowGQX	END=113635816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635817	.	C	.	.	LowGQX	.	GT	./.
chr1	113635818	.	T	.	.	LowGQX	END=113635821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635822	.	G	.	.	LowGQX	.	GT	./.
chr1	113635823	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635824	.	C	.	.	LowGQX	.	GT	./.
chr1	113635825	.	T	.	.	LowGQX	END=113635826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635827	.	G	.	.	LowGQX	.	GT	./.
chr1	113635828	.	G	.	.	LowGQX	END=113635834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635835	.	A	.	.	LowGQX	END=113635836	GT	./.
chr1	113635837	.	T	.	.	LowGQX	END=113635839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635840	.	C	.	.	LowGQX	.	GT	./.
chr1	113635841	.	A	.	.	LowGQX	END=113635845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635846	.	A	.	.	LowGQX	.	GT	./.
chr1	113635847	.	C	.	.	LowGQX	END=113635851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635852	.	A	.	.	LowGQX	.	GT	./.
chr1	113635853	.	G	.	.	LowGQX	END=113635855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635856	.	A	.	.	LowGQX	.	GT	./.
chr1	113635857	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635858	.	C	.	.	LowGQX	.	GT	./.
chr1	113635859	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635860	.	C	.	.	LowGQX	.	GT	./.
chr1	113635861	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	113635862	.	T	.	.	LowGQX	END=113635873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635874	.	C	.	.	LowGQX	.	GT	./.
chr1	113635875	.	C	.	.	LowGQX	END=113635885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635886	.	A	.	.	LowGQX	.	GT	./.
chr1	113635887	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113635888	.	T	.	.	LowGQX	END=113635915	GT	./.
chr1	113636050	.	A	.	.	LowGQX	END=113636056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113636057	.	A	.	.	LowGQX	.	GT	./.
chr1	113636058	.	T	.	.	LowGQX	END=113636065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113636066	.	T	.	.	LowGQX	.	GT	./.
chr1	113636067	.	C	.	.	LowGQX	END=113636104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113636105	.	C	.	.	LowGQX	.	GT	./.
chr1	113636106	.	T	.	.	LowGQX	END=113636120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113636121	.	C	.	.	LowGQX	.	GT	./.
chr1	113636122	.	C	.	.	LowGQX	END=113636155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113636156	.	C	.	.	LowGQX	.	GT	./.
chr1	113636157	.	T	.	.	LowGQX	END=113636160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113636161	.	T	.	.	LowGQX	.	GT	./.
chr1	113636162	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113636163	.	T	.	.	LowGQX	END=113636188	GT	./.
chr1	113636959	.	A	.	.	LowGQX	END=113637106	GT	./.
chr1	113637232	.	A	.	.	LowGQX	END=113637379	GT	./.
chr1	113638494	.	A	.	.	LowGQX	END=113638641	GT	./.
chr1	113638842	.	A	.	.	LowGQX	END=113638985	GT	./.
chr1	113638986	.	T	.	.	LowGQX	END=113638989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113641318	.	T	.	.	LowGQX	END=113641417	GT	./.
chr1	113642819	.	T	.	.	LowGQX	END=113642918	GT	./.
chr1	113643027	.	T	.	.	LowGQX	END=113643126	GT	./.
chr1	113650214	.	A	.	.	LowGQX	END=113650403	GT	./.
chr1	113652862	.	A	.	.	LowGQX	END=113653057	GT	./.
chr1	113653058	.	G	.	.	LowGQX	END=113653186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113655099	.	A	.	.	LowGQX	END=113655384	GT	./.
chr1	113657047	.	A	.	.	LowGQX	END=113657066	GT	./.
chr1	113657067	.	G	.	.	LowGQX	END=113657091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113657092	.	A	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	113657093	.	C	.	.	LowGQX	END=113657124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113657125	.	T	.	.	LowGQX	.	GT	./.
chr1	113657126	.	G	.	.	LowGQX	END=113657151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113657152	.	C	.	.	LowGQX	.	GT	./.
chr1	113657153	.	T	.	.	LowGQX	END=113657156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113657157	.	C	.	.	LowGQX	.	GT	./.
chr1	113657158	.	T	.	.	LowGQX	END=113657177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113657178	.	T	.	.	LowGQX	.	GT	./.
chr1	113657179	.	G	.	.	LowGQX	END=113657207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113657208	.	C	.	.	LowGQX	.	GT	./.
chr1	113657209	.	C	.	.	LowGQX	END=113657215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113657216	.	C	.	.	LowGQX	END=113657265	GT	./.
chr1	113657266	.	C	.	.	LowGQX	END=113657271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113657272	.	G	.	.	LowGQX	.	GT	./.
chr1	113657273	.	T	.	.	LowGQX	END=113657286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113657287	.	G	.	.	LowGQX	END=113657288	GT	./.
chr1	113657289	.	C	.	.	LowGQX	END=113657292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113657293	.	A	.	.	LowGQX	END=113657294	GT	./.
chr1	113657295	.	G	.	.	LowGQX	END=113657305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113657306	.	T	.	.	LowGQX	.	GT	./.
chr1	113657307	.	A	.	.	LowGQX	END=113657326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113657327	.	C	.	.	LowGQX	.	GT	./.
chr1	113657328	.	C	.	.	LowGQX	END=113657415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113657416	.	T	.	.	LowGQX	END=113657500	GT	./.
chr1	113658907	.	A	.	.	LowGQX	END=113658963	GT	./.
chr1	113658964	.	G	.	.	LowGQX	END=113658980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	113658981	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	113658982	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	113658983	.	T	.	.	LowGQX	END=113658990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	113658991	.	C	.	.	LowGQX	.	GT	./.
chr1	113658992	.	T	.	.	LowGQX	END=113658997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	113658998	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	113658999	.	C	.	.	LowGQX	END=113659011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	113659012	.	G	.	.	LowGQX	END=113659013	GT	./.
chr1	113659014	.	A	.	.	LowGQX	END=113659024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	113659025	.	C	.	.	LowGQX	.	GT	./.
chr1	113659026	.	C	.	.	LowGQX	END=113659033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	113659034	.	G	.	.	LowGQX	.	GT	./.
chr1	113659035	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	113659036	.	A	.	.	LowGQX	END=113659058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	113659059	.	G	.	.	LowGQX	.	GT	./.
chr1	113659060	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	113661853	.	A	.	.	LowGQX	END=113662147	GT	./.
chr1	113666495	.	A	.	.	LowGQX	END=113666497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113666498	.	A	.	.	LowGQX	END=113666500	GT	./.
chr1	113666501	.	A	.	.	LowGQX	END=113666502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113666503	.	T	.	.	LowGQX	.	GT	./.
chr1	113666504	.	G	.	.	LowGQX	END=113666516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113666517	.	T	.	.	LowGQX	.	GT	./.
chr1	113666518	.	G	.	.	LowGQX	END=113666520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113666521	.	A	.	.	LowGQX	.	GT	./.
chr1	113666522	.	C	.	.	LowGQX	END=113666525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113666526	.	A	.	.	LowGQX	.	GT	./.
chr1	113666527	.	A	.	.	LowGQX	END=113666537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113666538	.	G	.	.	LowGQX	.	GT	./.
chr1	113666539	.	G	.	.	LowGQX	END=113666553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113666554	.	C	.	.	LowGQX	.	GT	./.
chr1	113666555	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113666556	.	T	.	.	LowGQX	.	GT	./.
chr1	113666557	.	T	.	.	LowGQX	END=113666558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113666559	.	T	.	.	LowGQX	.	GT	./.
chr1	113666560	.	C	.	.	LowGQX	END=113666570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113666571	.	G	.	.	LowGQX	.	GT	./.
chr1	113666572	.	T	.	.	LowGQX	END=113666597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113666598	.	A	.	.	LowGQX	END=113666599	GT	./.
chr1	113666600	.	T	.	.	LowGQX	END=113666601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113666602	.	A	.	.	LowGQX	.	GT	./.
chr1	113666603	.	G	.	.	LowGQX	END=113666607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113666608	.	T	.	.	LowGQX	.	GT	./.
chr1	113666609	.	G	.	.	LowGQX	END=113666659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	113666660	.	A	.	.	LowGQX	END=113666725	GT	./.
chr1	113933643	.	A	.	.	LowGQX	END=113933982	GT	./.
chr1	114092135	.	A	.	.	LowGQX	END=114092215	GT	./.
chr1	114092216	.	A	.	.	LowGQX	END=114092238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114092239	.	T	.	.	LowGQX	END=114092240	GT	./.
chr1	114092241	.	A	.	.	LowGQX	END=114092242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114092243	.	A	.	.	LowGQX	.	GT	./.
chr1	114092244	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114092245	.	C	.	.	LowGQX	END=114092246	GT	./.
chr1	114092247	.	A	.	.	LowGQX	END=114092249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114092250	.	C	.	.	LowGQX	.	GT	./.
chr1	114092251	.	C	.	.	LowGQX	END=114092253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114092254	.	G	.	.	LowGQX	.	GT	./.
chr1	114092255	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114123162	.	A	.	.	LowGQX	END=114123285	GT	./.
chr1	114128007	.	A	.	.	LowGQX	END=114128220	GT	./.
chr1	114133084	.	T	.	.	LowGQX	END=114133282	GT	./.
chr1	114137093	.	T	.	.	LowGQX	END=114137119	GT	./.
chr1	114137120	.	C	.	.	LowGQX	END=114137141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114137142	.	T	.	.	LowGQX	.	GT	./.
chr1	114137143	.	T	.	.	LowGQX	END=114137192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114157151	.	A	.	.	LowGQX	END=114157301	GT	./.
chr1	114161082	.	T	.	.	LowGQX	END=114161094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114161095	.	T	.	.	LowGQX	END=114161240	GT	./.
chr1	114162356	.	A	.	.	LowGQX	END=114162455	GT	./.
chr1	114165416	.	A	.	.	LowGQX	END=114165618	GT	./.
chr1	114184531	.	A	.	.	LowGQX	END=114185140	GT	./.
chr1	114186331	.	C	.	.	LowGQX	END=114186398	GT	./.
chr1	114186399	.	G	.	.	LowGQX	END=114186400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114186401	.	G	.	.	LowGQX	.	GT	./.
chr1	114186402	.	T	.	.	LowGQX	END=114186430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114189106	.	A	.	.	LowGQX	END=114189266	GT	./.
chr1	114191855	.	T	.	.	LowGQX	END=114191954	GT	./.
chr1	114193624	.	T	.	.	LowGQX	END=114193830	GT	./.
chr1	114196450	.	A	.	.	LowGQX	END=114196642	GT	./.
chr1	114201700	.	A	.	.	LowGQX	END=114201899	GT	./.
chr1	114214354	.	A	.	.	LowGQX	END=114214357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114214358	.	C	.	.	LowGQX	.	GT	./.
chr1	114214359	.	A	.	.	LowGQX	END=114214368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114214369	.	A	.	.	LowGQX	.	GT	./.
chr1	114214370	.	C	.	.	LowGQX	END=114214378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114214379	.	A	.	.	LowGQX	.	GT	./.
chr1	114214380	.	C	.	.	LowGQX	END=114214382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114214383	.	A	.	.	LowGQX	.	GT	./.
chr1	114214384	.	C	.	.	LowGQX	END=114214386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114214387	.	A	.	.	LowGQX	.	GT	./.
chr1	114214388	.	G	.	.	LowGQX	END=114214389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114214390	.	C	.	.	LowGQX	.	GT	./.
chr1	114214391	.	A	.	.	LowGQX	END=114214394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114214395	.	A	.	.	LowGQX	END=114214396	GT	./.
chr1	114214397	.	A	.	.	LowGQX	END=114214400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114214401	.	C	.	.	LowGQX	END=114214402	GT	./.
chr1	114214403	.	G	.	.	LowGQX	END=114214405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114214406	.	C	.	.	LowGQX	END=114214460	GT	./.
chr1	114215235	.	A	.	.	LowGQX	END=114215272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114215273	.	C	.	.	LowGQX	.	GT	./.
chr1	114215274	.	A	.	.	LowGQX	END=114215318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114215319	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	114215320	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114215321	.	T	.	.	LowGQX	END=114215322	GT	./.
chr1	114215323	.	A	.	.	LowGQX	END=114215326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114215327	.	C	.	.	LowGQX	END=114215365	GT	./.
chr1	114215882	.	T	.	.	LowGQX	END=114216101	GT	./.
chr1	114216102	.	G	.	.	LowGQX	END=114216120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114223818	.	A	.	.	LowGQX	END=114223960	GT	./.
chr1	114224809	.	T	.	.	LowGQX	END=114224852	GT	./.
chr1	114224853	.	G	.	.	LowGQX	END=114224908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114225518	.	G	.	.	LowGQX	END=114225944	GT	./.
chr1	114225945	.	G	.	.	LowGQX	END=114226014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226015	.	A	.	.	LowGQX	.	GT	./.
chr1	114226016	.	C	.	.	LowGQX	END=114226020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226021	.	T	.	.	LowGQX	.	GT	./.
chr1	114226022	.	C	.	.	LowGQX	END=114226032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226033	.	A	.	.	LowGQX	.	GT	./.
chr1	114226034	.	A	.	.	LowGQX	END=114226057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226058	.	A	.	.	LowGQX	.	GT	./.
chr1	114226059	.	A	.	.	LowGQX	END=114226060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226061	.	A	.	.	LowGQX	.	GT	./.
chr1	114226062	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226063	.	G	.	.	LowGQX	.	GT	./.
chr1	114226064	.	C	.	.	LowGQX	END=114226070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226071	.	A	.	.	LowGQX	.	GT	./.
chr1	114226072	.	A	.	.	LowGQX	END=114226094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226095	.	C	.	.	LowGQX	END=114226288	GT	./.
chr1	114226289	.	C	.	.	LowGQX	END=114226305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226306	.	T	.	.	LowGQX	END=114226307	GT	./.
chr1	114226308	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226309	.	G	.	.	LowGQX	.	GT	./.
chr1	114226310	.	A	.	.	LowGQX	END=114226312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226313	.	A	.	.	LowGQX	.	GT	./.
chr1	114226314	.	C	.	.	LowGQX	END=114226317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226318	.	T	.	.	LowGQX	.	GT	./.
chr1	114226319	.	A	.	.	LowGQX	END=114226323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226324	.	A	.	.	LowGQX	.	GT	./.
chr1	114226325	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226326	.	T	.	.	LowGQX	.	GT	./.
chr1	114226327	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226328	.	T	.	.	LowGQX	.	GT	./.
chr1	114226329	.	C	.	.	LowGQX	END=114226334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226335	.	A	.	.	LowGQX	END=114226336	GT	./.
chr1	114226337	.	G	.	.	LowGQX	END=114226339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226340	.	A	.	.	LowGQX	.	GT	./.
chr1	114226341	.	A	.	.	LowGQX	END=114226346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226347	.	A	.	.	LowGQX	END=114226348	GT	./.
chr1	114226349	.	A	.	.	LowGQX	END=114226352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226353	.	T	.	.	LowGQX	.	GT	./.
chr1	114226354	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226355	.	A	.	.	LowGQX	.	GT	./.
chr1	114226356	.	C	.	.	LowGQX	END=114226364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226365	.	A	.	.	LowGQX	.	GT	./.
chr1	114226366	.	A	.	.	LowGQX	END=114226398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226399	.	T	.	.	LowGQX	END=114226400	GT	./.
chr1	114226401	.	T	.	.	LowGQX	END=114226409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226410	.	C	.	.	LowGQX	.	GT	./.
chr1	114226411	.	A	.	.	LowGQX	END=114226419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226420	.	G	.	.	LowGQX	.	GT	./.
chr1	114226421	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226422	.	T	.	.	LowGQX	.	GT	./.
chr1	114226423	.	G	.	.	LowGQX	END=114226437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226438	.	A	.	.	LowGQX	.	GT	./.
chr1	114226439	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114226440	.	A	.	.	LowGQX	END=114226636	GT	./.
chr1	114234813	.	A	.	.	LowGQX	END=114234912	GT	./.
chr1	114240288	.	T	.	.	LowGQX	END=114240387	GT	./.
chr1	114240882	.	A	.	.	LowGQX	END=114241051	GT	./.
chr1	114242264	.	C	.	.	LowGQX	END=114242285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114242286	.	C	.	.	LowGQX	.	GT	./.
chr1	114242287	.	T	.	.	LowGQX	END=114242290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114242291	.	A	.	.	LowGQX	.	GT	./.
chr1	114242292	.	T	.	.	LowGQX	END=114242294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114242295	.	T	.	.	LowGQX	.	GT	./.
chr1	114242296	.	A	.	.	LowGQX	END=114242307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114242308	.	T	.	.	LowGQX	.	GT	./.
chr1	114242309	.	C	.	.	LowGQX	END=114242328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114242329	.	C	.	.	LowGQX	.	GT	./.
chr1	114242330	.	A	.	.	LowGQX	END=114242344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114242345	.	A	.	.	LowGQX	.	GT	./.
chr1	114242346	.	G	.	.	LowGQX	END=114242347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114242348	.	T	.	.	LowGQX	END=114242400	GT	./.
chr1	114242401	.	C	.	.	LowGQX	END=114242423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114243384	.	C	.	.	LowGQX	END=114243603	GT	./.
chr1	114246678	.	C	.	.	LowGQX	END=114246791	GT	./.
chr1	114247286	.	A	.	.	LowGQX	END=114247421	GT	./.
chr1	114248455	.	T	.	.	LowGQX	END=114248609	GT	./.
chr1	114248610	.	G	.	.	LowGQX	END=114248661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114248662	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	114248663	.	G	.	.	LowGQX	END=114248759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114248760	.	C	.	.	LowGQX	END=114248776	GT	./.
chr1	114248777	.	G	.	.	LowGQX	END=114248782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114248783	.	A	.	.	LowGQX	.	GT	./.
chr1	114248784	.	C	.	.	LowGQX	END=114248786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114249214	.	A	.	.	LowGQX	END=114249217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114249218	.	T	.	.	LowGQX	END=114249346	GT	./.
chr1	114252874	.	A	.	.	LowGQX	END=114253099	GT	./.
chr1	114254363	.	T	.	.	LowGQX	END=114254462	GT	./.
chr1	114254560	.	A	.	.	LowGQX	END=114254737	GT	./.
chr1	114255869	.	A	.	.	LowGQX	END=114256062	GT	./.
chr1	114267379	.	A	.	.	LowGQX	END=114267517	GT	./.
chr1	114269008	.	A	.	.	LowGQX	END=114269135	GT	./.
chr1	114269136	.	G	.	.	LowGQX	END=114269198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114280730	.	A	.	.	LowGQX	END=114280757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	114280758	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	114280759	.	A	.	.	LowGQX	END=114280851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114280852	.	T	.	.	LowGQX	END=114280892	GT	./.
chr1	114281337	.	A	.	.	LowGQX	END=114281436	GT	./.
chr1	114300300	.	G	.	.	LowGQX	END=114300399	GT	./.
chr1	114301254	.	A	.	.	LowGQX	END=114301353	GT	./.
chr1	114308600	.	T	.	.	LowGQX	END=114309077	GT	./.
chr1	114309719	.	A	.	.	LowGQX	END=114309831	GT	./.
chr1	114310842	.	A	.	.	LowGQX	END=114310933	GT	./.
chr1	114310934	.	G	.	.	LowGQX	END=114310944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114310945	.	A	.	.	LowGQX	.	GT	./.
chr1	114310946	.	A	.	.	LowGQX	END=114310947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114310948	.	G	.	.	LowGQX	.	GT	./.
chr1	114310949	.	A	.	.	LowGQX	END=114311013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114319830	.	A	.	.	LowGQX	END=114319831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114319832	.	C	.	2.30	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:2:0:60:0
chr1	114319833	.	G	.	.	LowGQX	END=114319927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114319928	.	C	.	.	LowGQX	END=114319976	GT	./.
chr1	114320291	.	A	.	.	LowGQX	END=114320432	GT	./.
chr1	114339983	.	A	.	.	LowGQX	END=114340122	GT	./.
chr1	114340123	.	T	.	.	LowGQX	END=114340145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114340146	.	T	.	.	LowGQX	.	GT	./.
chr1	114340147	.	T	.	.	LowGQX	END=114340156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114340157	.	T	.	.	LowGQX	.	GT	./.
chr1	114340158	.	C	.	.	LowGQX	END=114340167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114340168	.	C	.	.	LowGQX	.	GT	./.
chr1	114340169	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114340170	.	A	.	.	LowGQX	.	GT	./.
chr1	114340171	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114340172	.	G	.	.	LowGQX	.	GT	./.
chr1	114340173	.	C	.	.	LowGQX	END=114340177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114340178	.	A	.	.	LowGQX	.	GT	./.
chr1	114340179	.	A	.	.	LowGQX	END=114340183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114340184	.	T	.	.	LowGQX	.	GT	./.
chr1	114340185	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114340186	.	A	.	.	LowGQX	.	GT	./.
chr1	114340187	.	G	.	.	LowGQX	END=114340191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114340192	.	T	.	.	LowGQX	.	GT	./.
chr1	114340193	.	C	.	.	LowGQX	END=114340207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114340208	.	G	.	.	LowGQX	.	GT	./.
chr1	114340209	.	G	.	.	LowGQX	END=114340212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114340213	.	C	.	.	LowGQX	.	GT	./.
chr1	114340214	.	A	.	.	LowGQX	END=114340301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114340302	.	T	.	.	LowGQX	.	GT	./.
chr1	114340303	.	A	.	.	LowGQX	END=114340342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114340343	.	T	.	.	LowGQX	.	GT	./.
chr1	114340344	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114340345	.	A	.	.	LowGQX	.	GT	./.
chr1	114340346	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114340347	.	T	.	.	LowGQX	.	GT	./.
chr1	114340348	.	C	.	.	LowGQX	END=114340358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114340359	.	T	.	.	LowGQX	.	GT	./.
chr1	114340360	.	T	.	.	LowGQX	END=114340374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114340375	.	T	.	.	LowGQX	END=114340660	GT	./.
chr1	114354330	.	A	.	.	LowGQX	END=114354634	GT	./.
chr1	114354635	.	C	.	.	LowGQX	END=114354704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114354705	.	A	.	.	LowGQX	.	GT	./.
chr1	114354706	.	G	.	.	LowGQX	END=114354729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114354730	.	C	.	.	LowGQX	.	GT	./.
chr1	114354731	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114354732	.	C	.	.	LowGQX	END=114354974	GT	./.
chr1	114354975	.	G	.	.	LowGQX	END=114355036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114357450	.	A	.	.	PASS	END=114357489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	114357490	.	T	.	.	PASS	END=114357525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	114357526	.	A	.	.	PASS	END=114357599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	114357600	.	A	.	.	PASS	END=114357609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	114362169	.	T	.	.	PASS	END=114362187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	114362188	.	A	.	.	PASS	END=114362278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	114367672	.	T	.	.	PASS	END=114367702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	114367703	.	T	.	.	PASS	END=114367794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	114367795	.	C	.	.	PASS	END=114367810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	114367811	.	A	.	.	PASS	END=114367829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	114372212	.	A	.	.	PASS	END=114372280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	114372281	.	G	.	.	PASS	END=114372331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	114372502	.	C	.	.	PASS	END=114372587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	114372588	.	A	.	.	PASS	END=114372611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	114372612	.	G	.	.	PASS	END=114372652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	114372653	.	T	.	.	PASS	END=114372661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	114375628	.	A	.	.	PASS	END=114375637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	114375638	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:63:60
chr1	114375639	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:31:60
chr1	114375640	.	A	.	.	PASS	END=114375661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	114375662	.	A	.	.	PASS	END=114375692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	114375693	.	T	.	.	PASS	END=114375698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	114375699	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:42:60
chr1	114375700	.	T	.	.	PASS	END=114375717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	114375718	.	A	.	.	PASS	END=114375760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	114375761	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:51:60
chr1	114375762	.	T	.	.	PASS	END=114375785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	114376929	.	A	.	.	PASS	END=114376942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	114376943	.	A	.	.	PASS	END=114377001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	114377002	.	T	.	.	PASS	END=114377063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	114377470	.	T	.	.	PASS	END=114377503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	114377504	.	T	.	.	PASS	END=114377512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	114377513	.	C	.	.	PASS	END=114377523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	114377524	.	G	.	.	PASS	END=114377567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	114377568	.	A	G	1633.00	PASS	BaseQRankSum=0.491;DP=142;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.3630;MQ=60;MQ0=0;MQRankSum=-0.356;QD=11.50;ReadPosRankSum=0.156;SB=-643.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:77,65:142:99:1663,0,2013:60:99:0.458
chr1	114377569	.	T	.	.	PASS	END=114377623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	114380210	.	A	.	.	PASS	END=114380224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	114380225	.	C	.	.	PASS	END=114380234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	114380235	.	A	.	.	PASS	END=114380295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	114380296	.	A	.	.	PASS	END=114380320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	114380321	.	C	.	.	PASS	END=114380393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	114380394	.	C	.	.	PASS	END=114380827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr1	114380828	.	C	.	.	PASS	END=114381031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	114381155	.	A	.	.	PASS	END=114381254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	114391090	.	A	.	.	PASS	END=114391190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr1	114391191	.	C	.	.	PASS	END=114391255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	114394638	.	A	.	.	PASS	END=114394651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	114394652	.	C	.	.	PASS	END=114394674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	114394675	.	G	.	.	PASS	END=114394737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	114397077	.	G	.	.	PASS	END=114397176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	114397527	.	A	.	.	PASS	END=114397574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	114397575	.	G	.	.	PASS	END=114397581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	114397582	.	C	.	.	PASS	END=114397659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	114397660	.	A	.	.	PASS	END=114397673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	114398984	.	C	.	.	PASS	END=114399031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	114399032	.	A	.	.	PASS	END=114399083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	114399156	.	G	.	.	PASS	END=114399227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	114399228	.	C	.	.	PASS	END=114399255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	114400330	.	A	.	.	PASS	END=114400394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	114400395	.	T	.	.	PASS	END=114400429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	114401098	.	A	.	.	PASS	END=114401110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	114401111	.	A	.	.	PASS	END=114401197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	114401613	.	T	.	.	PASS	END=114401637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	114401638	.	C	.	.	PASS	END=114401701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	114401702	.	T	.	.	PASS	END=114401712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	114401972	.	A	.	.	PASS	END=114402059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	114402060	.	T	.	.	PASS	END=114402081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	114402082	.	T	.	.	PASS	END=114402084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	114406809	.	T	.	.	LowGQX	END=114406908	GT	./.
chr1	114406909	.	G	.	.	LowGQX	END=114406981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114406982	.	A	.	10.70	LowGQX	DP=2;MQ=51;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.05:51:0
chr1	114406983	.	G	.	.	LowGQX	END=114407003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:51
chr1	114407004	.	C	.	.	LowGQX	.	GT	./.
chr1	114414153	.	A	.	.	PASS	END=114414252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	114423692	.	C	.	.	LowGQX	END=114423791	GT	./.
chr1	114424393	.	A	.	.	LowGQX	END=114424541	GT	./.
chr1	114424542	.	C	.	.	LowGQX	END=114424548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114424549	.	G	.	.	LowGQX	END=114424550	GT	./.
chr1	114424551	.	T	.	.	LowGQX	END=114424554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114424555	.	C	.	.	LowGQX	END=114424556	GT	./.
chr1	114424557	.	G	.	.	LowGQX	END=114424558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114424559	.	A	.	.	LowGQX	.	GT	./.
chr1	114424560	.	A	.	.	LowGQX	END=114424565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114424566	.	A	.	.	LowGQX	.	GT	./.
chr1	114424567	.	G	.	.	LowGQX	END=114424568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114424569	.	A	.	.	LowGQX	END=114424570	GT	./.
chr1	114424571	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114424572	.	C	.	.	LowGQX	END=114424573	GT	./.
chr1	114424574	.	A	.	.	LowGQX	END=114424575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114424576	.	G	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	114424577	.	T	.	.	LowGQX	.	GT	./.
chr1	114424578	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114424579	.	T	.	.	LowGQX	END=114424582	GT	./.
chr1	114424583	.	T	.	.	LowGQX	END=114424584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114424585	.	A	.	.	LowGQX	.	GT	./.
chr1	114424586	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114424587	.	A	.	.	LowGQX	END=114424588	GT	./.
chr1	114424589	.	A	.	.	LowGQX	END=114424596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114424597	.	G	.	.	LowGQX	.	GT	./.
chr1	114424598	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114424599	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	114424600	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	114424601	.	C	T	14.91	LowGQ;LowGQX	DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.97;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:3.01:45,3,0:60:3:1.000
chr1	114424602	.	C	.	.	LowGQX	END=114424604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	114424605	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	114424606	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	114424607	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	114424608	.	T	.	.	LowGQX	END=114424613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	114424614	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	114424615	.	C	.	.	LowGQX	END=114424617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	114424618	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	114424619	.	T	.	.	LowGQX	END=114424621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	114429157	.	A	.	.	LowGQX	END=114429282	GT	./.
chr1	114429869	.	A	.	.	LowGQX	END=114429999	GT	./.
chr1	114437636	.	A	.	.	PASS	END=114437655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:83:60
chr1	114437656	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:69:60
chr1	114437657	.	A	.	.	PASS	END=114437666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	114437667	.	A	.	.	PASS	END=114437690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	114437691	.	G	.	.	PASS	END=114437705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	114437706	.	A	.	.	PASS	END=114437743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	114437744	.	A	.	.	PASS	END=114437854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	114437855	.	A	.	.	PASS	END=114437931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	114437932	.	T	.	.	PASS	END=114438024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	114438025	.	C	.	.	PASS	END=114438037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	114438038	.	A	.	.	PASS	END=114438063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	114438064	.	A	.	.	PASS	END=114438082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	114438083	.	C	.	.	PASS	END=114438089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	114438090	.	T	.	.	PASS	END=114438103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	114438104	.	A	.	.	PASS	END=114438111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	114438112	.	G	.	.	PASS	END=114438117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	114438118	.	A	.	.	PASS	END=114438143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	114438144	.	A	.	.	PASS	END=114438154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	114438155	.	C	.	.	PASS	END=114438162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr1	114438163	.	G	.	.	PASS	END=114438165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	114438301	.	A	.	.	PASS	END=114438310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:60
chr1	114438311	.	A	.	.	PASS	END=114438322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	114438323	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:48:60
chr1	114438324	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:12:60
chr1	114438325	.	A	.	.	PASS	END=114438353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	114438354	.	G	.	.	PASS	END=114438387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	114438388	.	C	.	.	PASS	END=114438413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	114438414	.	G	.	.	PASS	END=114438437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	114438438	.	C	.	.	PASS	END=114438454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	114438455	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:39:60
chr1	114438456	.	C	.	.	PASS	END=114438472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	114438473	.	C	.	.	PASS	END=114438500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	114438501	.	G	.	.	PASS	END=114438593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	114438594	.	A	.	.	PASS	END=114438625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	114438626	.	A	.	.	PASS	END=114438640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	114438641	.	A	.	.	PASS	END=114438660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	114438661	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:66:60
chr1	114438662	.	T	.	.	PASS	END=114438677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	114438678	.	A	.	.	PASS	END=114438698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	114438699	.	A	.	.	PASS	END=114438700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:45:60
chr1	114438701	.	C	.	.	PASS	END=114438711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr1	114438819	.	A	.	.	PASS	END=114438849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	114438850	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:75:60
chr1	114438851	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:27:60
chr1	114438852	.	A	.	.	PASS	END=114438854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	114438855	.	T	.	.	PASS	END=114438859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	114438860	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:47:60
chr1	114438861	.	T	.	.	PASS	END=114438872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:69:60
chr1	114438873	.	A	.	.	PASS	END=114438876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	114438877	.	C	.	.	PASS	END=114438884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	114438885	.	C	.	.	PASS	END=114438895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	114438896	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:63:60
chr1	114438897	.	A	.	.	PASS	END=114438911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	114438912	.	T	.	.	PASS	END=114438931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	114438932	.	G	.	.	PASS	END=114438950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	114438951	.	A	G	874.46	PASS	BaseQRankSum=0.225;DP=72;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=0.329;QD=12.15;ReadPosRankSum=0.884;SB=-369.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:32,39:71:99:904,0,823:60:99:0.549
chr1	114438952	.	A	.	.	PASS	END=114438989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	114438990	.	T	.	.	PASS	END=114439052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	114439053	.	T	.	.	PASS	END=114439077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	114439078	.	C	.	.	PASS	END=114439081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	114439082	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:70:60
chr1	114439083	.	T	.	.	PASS	END=114439085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	114439086	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:69:60
chr1	114439087	.	C	.	.	PASS	END=114439121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	114439122	.	A	.	.	PASS	END=114439130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:96:60
chr1	114439131	.	T	.	.	PASS	END=114439138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	114440411	.	G	.	.	PASS	END=114440423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	114440424	.	C	.	.	PASS	END=114440440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	114440441	.	T	.	.	PASS	END=114440522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	114440523	.	T	.	.	PASS	END=114440563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:93:60
chr1	114440564	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:76:60
chr1	114440565	.	A	.	.	PASS	END=114440574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	114440575	.	A	.	.	PASS	END=114440584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	114440585	.	A	.	.	PASS	END=114440589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	114440590	.	A	.	.	PASS	END=114440598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	114440599	.	T	.	.	PASS	END=114440601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	114440602	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:9:60
chr1	114440603	.	A	.	.	PASS	END=114440607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	114440608	.	C	.	.	PASS	END=114440616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	114441289	.	A	.	.	PASS	END=114441360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	114441361	.	G	.	.	PASS	END=114441390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	114441391	.	C	.	.	PASS	END=114441410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	114441411	.	C	.	.	PASS	END=114441414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	114441415	.	C	.	.	PASS	END=114441417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	114441418	.	T	.	.	PASS	END=114441423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	114441424	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:24:60
chr1	114441425	.	T	.	.	PASS	END=114441433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	114441434	.	A	.	.	PASS	END=114441440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	114441441	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:39:60
chr1	114441442	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:19:60
chr1	114441443	.	A	.	.	PASS	END=114441459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	114441460	.	G	.	.	PASS	END=114441464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	114441465	.	A	.	.	PASS	END=114441466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	114441467	.	T	.	.	PASS	END=114441468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	114441469	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	114441470	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	114441471	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	114441472	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	114441473	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	114441474	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	114442439	.	T	.	.	LowGQX	END=114442440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	114442441	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	114442442	.	C	.	.	LowGQX	END=114442446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	114442447	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	114442448	.	C	.	.	LowGQX	END=114442450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	114442451	.	T	.	.	LowGQX	END=114442452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	114442453	.	T	.	.	PASS	END=114442458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	114442459	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	114442460	.	C	.	.	PASS	END=114442471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	114442472	.	G	.	.	PASS	END=114442485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	114442486	.	T	.	.	PASS	END=114442499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	114442500	.	A	.	.	PASS	END=114442507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	114442508	.	A	.	.	PASS	END=114442510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	114442511	.	G	.	.	PASS	END=114442514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	114442515	.	C	.	.	PASS	END=114442517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	114442518	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:45:60
chr1	114442519	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:84:60
chr1	114442520	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:33:60
chr1	114442521	.	C	.	.	PASS	END=114442557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	114442558	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:66:60
chr1	114442559	.	C	.	.	PASS	END=114442566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	114442567	.	T	.	.	PASS	END=114442580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	114442581	.	T	.	.	PASS	END=114442596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	114442597	.	A	.	.	PASS	END=114442625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	114442626	.	T	.	.	PASS	END=114442656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	114442657	.	A	.	.	PASS	END=114442749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	114442750	.	A	.	.	PASS	END=114442783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	114442784	.	A	.	.	PASS	END=114442805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	114442806	.	C	.	.	PASS	END=114442828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	114442829	.	T	.	.	PASS	END=114442865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	114442866	.	A	.	.	PASS	END=114442886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:95:60
chr1	114442887	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:50:60
chr1	114442888	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:99:60
chr1	114442889	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:69:60
chr1	114442890	.	A	.	.	PASS	END=114442910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	114442911	.	G	.	.	PASS	END=114442914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	114442915	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:39:60
chr1	114442916	.	T	.	.	PASS	END=114442928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	114442929	.	G	.	.	PASS	END=114442944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	114442945	.	T	.	.	PASS	END=114442959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	114442960	.	G	.	.	PASS	END=114442961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	114442962	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:39:60
chr1	114442963	.	T	.	.	LowGQX	END=114442974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	114442975	.	A	.	.	LowGQX	END=114442981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	114442982	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	114442983	.	C	.	.	LowGQX	END=114442988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	114442989	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	114442990	.	T	.	.	LowGQX	END=114442993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	114442994	.	C	.	6.76	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.02:60:0
chr1	114442995	.	C	.	.	LowGQX	END=114442996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	114442997	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	114442998	.	G	.	.	LowGQX	END=114442999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	114443000	.	C	.	6.76	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.02:60:0
chr1	114443001	.	C	.	.	LowGQX	END=114443006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	114443007	.	G	.	.	LowGQX	END=114443015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	114443016	.	T	.	.	LowGQX	END=114443023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	114443024	.	T	.	.	LowGQX	END=114443034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114443035	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	114443036	.	A	.	.	LowGQX	END=114443073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114443807	.	T	.	.	PASS	END=114443854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	114443855	.	A	.	.	PASS	END=114443886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	114443887	.	A	.	.	PASS	END=114443980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	114443981	.	T	.	.	PASS	END=114444012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	114444013	.	A	.	.	PASS	END=114444056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	114444326	.	A	.	.	PASS	END=114444345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	114444346	.	C	.	.	PASS	END=114444416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:93:60
chr1	114444417	.	T	.	.	PASS	END=114444487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	114444488	.	A	.	.	PASS	END=114444512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	114444513	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:73:60
chr1	114444514	.	A	.	.	PASS	END=114444546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	114444547	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:57:60
chr1	114444548	.	T	.	.	PASS	END=114444558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	114445209	.	T	.	.	PASS	END=114445210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	114445211	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	114445212	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	114445213	.	T	.	.	LowGQX	END=114445214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	114445215	.	G	.	.	PASS	END=114445218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	114445219	.	T	.	.	LowGQX	END=114445222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	114445223	.	C	.	.	PASS	END=114445230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	114445231	.	T	.	.	PASS	END=114445237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	114445238	.	A	.	.	PASS	END=114445251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	114445252	.	G	.	.	PASS	END=114445262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	114445263	.	A	.	.	PASS	END=114445265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	114445266	.	C	.	.	PASS	END=114445276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	114445277	.	C	.	.	PASS	END=114445288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	114445289	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:70:60
chr1	114445290	.	C	.	.	PASS	END=114445318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	114445319	.	G	.	.	PASS	END=114445340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	114445341	.	G	.	.	PASS	END=114445381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	114445382	.	C	.	.	PASS	END=114445423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	114445424	.	G	.	.	PASS	END=114445476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	114445477	.	T	.	.	PASS	END=114445487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	114445488	.	A	.	.	PASS	END=114445524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	114445525	.	C	.	.	PASS	END=114445535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr1	114447176	.	G	.	.	PASS	END=114447215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	114447216	.	G	.	.	PASS	END=114447314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	114447315	.	C	.	.	PASS	END=114447348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr1	114447349	.	A	.	.	PASS	END=114447365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	114447366	.	C	.	.	PASS	END=114447390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	114448197	.	A	.	.	LowGQX	END=114448370	GT	./.
chr1	114448371	.	G	.	.	LowGQX	END=114448388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114448389	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	114448390	.	A	.	.	LowGQX	END=114448399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114449616	.	A	.	.	LowGQX	END=114449640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114449641	.	C	.	.	LowGQX	.	GT	./.
chr1	114449642	.	C	.	.	LowGQX	END=114449679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114449680	.	A	.	.	LowGQX	.	GT	./.
chr1	114449681	.	A	.	.	LowGQX	END=114449700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114449701	.	C	.	.	LowGQX	END=114449785	GT	./.
chr1	114450629	.	A	.	.	LowGQX	END=114450815	GT	./.
chr1	114453751	.	A	.	.	LowGQX	END=114454815	GT	./.
chr1	114471943	.	G	.	.	LowGQX	END=114472154	GT	./.
chr1	114483003	.	G	.	.	LowGQX	END=114483478	GT	./.
chr1	114483479	.	A	.	.	LowGQX	END=114483647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114483648	.	A	.	.	LowGQX	.	GT	./.
chr1	114483649	.	T	.	.	LowGQX	END=114483678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114483679	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	114483680	.	C	.	.	LowGQX	END=114483708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114483709	.	T	.	.	LowGQX	END=114484083	GT	./.
chr1	114495386	.	A	.	.	LowGQX	END=114495396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114495397	.	A	.	.	LowGQX	.	GT	./.
chr1	114495398	.	A	.	.	LowGQX	END=114495402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114495403	.	T	.	.	LowGQX	.	GT	./.
chr1	114495404	.	C	.	.	LowGQX	END=114495407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114495408	.	G	.	.	LowGQX	END=114495409	GT	./.
chr1	114495410	.	T	.	.	LowGQX	END=114495416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114495417	.	T	.	.	LowGQX	.	GT	./.
chr1	114495418	.	T	.	.	LowGQX	END=114495429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114495430	.	T	.	.	LowGQX	.	GT	./.
chr1	114495431	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114495432	.	A	.	.	LowGQX	.	GT	./.
chr1	114495433	.	T	.	.	LowGQX	END=114495443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114495444	.	T	.	.	LowGQX	.	GT	./.
chr1	114495445	.	G	.	.	LowGQX	END=114495508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114495509	.	C	.	.	LowGQX	END=114495513	GT	./.
chr1	114497253	.	T	.	.	LowGQX	END=114497394	GT	./.
chr1	114498179	.	T	.	.	LowGQX	END=114498278	GT	./.
chr1	114499247	.	A	.	.	LowGQX	END=114499446	GT	./.
chr1	114499744	.	A	.	.	LowGQX	END=114499886	GT	./.
chr1	114499887	.	G	.	.	LowGQX	END=114499910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114500686	.	A	.	.	LowGQX	END=114500915	GT	./.
chr1	114504937	.	A	.	.	LowGQX	END=114504999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114505000	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	114505001	.	A	.	.	LowGQX	END=114505039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114505040	.	C	.	.	LowGQX	END=114505062	GT	./.
chr1	114506007	.	A	.	.	LowGQX	END=114506078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114506079	.	T	.	.	LowGQX	END=114506145	GT	./.
chr1	114508750	.	A	.	.	LowGQX	END=114508864	GT	./.
chr1	114508865	.	G	.	.	LowGQX	END=114508896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114510386	.	A	.	.	LowGQX	END=114510625	GT	./.
chr1	114511062	.	A	.	.	LowGQX	END=114511241	GT	./.
chr1	114511242	.	G	.	.	LowGQX	END=114511272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114512576	.	A	.	.	LowGQX	END=114512584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114512585	.	C	.	.	LowGQX	.	GT	./.
chr1	114512586	.	T	.	.	LowGQX	END=114512605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114512606	.	A	.	.	LowGQX	.	GT	./.
chr1	114512607	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114512608	.	C	.	.	LowGQX	END=114512611	GT	./.
chr1	114512612	.	T	.	.	LowGQX	END=114512614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114512615	.	G	.	.	LowGQX	.	GT	./.
chr1	114512616	.	T	.	.	LowGQX	END=114512618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114512619	.	C	.	.	LowGQX	.	GT	./.
chr1	114512620	.	T	.	.	LowGQX	END=114512624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114512625	.	A	.	.	LowGQX	.	GT	./.
chr1	114512626	.	T	.	.	LowGQX	END=114512628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114512629	.	T	.	.	LowGQX	.	GT	./.
chr1	114512630	.	T	.	.	LowGQX	END=114512633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114512634	.	C	.	.	LowGQX	.	GT	./.
chr1	114512635	.	A	.	.	LowGQX	END=114512636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114512637	.	A	.	.	LowGQX	.	GT	./.
chr1	114512638	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114512639	.	T	.	.	LowGQX	END=114512640	GT	./.
chr1	114512641	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114512642	.	G	.	.	LowGQX	.	GT	./.
chr1	114512643	.	A	.	.	LowGQX	END=114512645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114512646	.	C	.	.	LowGQX	.	GT	./.
chr1	114512647	.	T	.	.	LowGQX	END=114512648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114512649	.	C	.	.	LowGQX	END=114512698	GT	./.
chr1	114512699	.	A	.	.	LowGQX	END=114512798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114512799	.	C	.	.	LowGQX	END=114512821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	114514374	.	A	.	.	LowGQX	END=114514595	GT	./.
chr1	114514596	.	G	.	.	LowGQX	END=114514723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114515644	.	A	.	.	LowGQX	END=114515687	GT	./.
chr1	114515688	.	A	.	.	LowGQX	END=114515691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515692	.	A	.	.	LowGQX	.	GT	./.
chr1	114515693	.	C	.	.	LowGQX	END=114515696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515697	.	G	.	.	LowGQX	.	GT	./.
chr1	114515698	.	C	.	.	LowGQX	END=114515699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515700	.	C	.	.	LowGQX	.	GT	./.
chr1	114515701	.	C	.	.	LowGQX	END=114515712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114515713	.	A	.	30.46	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:1.56:60:2
chr1	114515714	.	G	.	.	LowGQX	END=114515715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114515716	.	C	.	.	LowGQX	.	GT	./.
chr1	114515717	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114515718	.	T	.	.	LowGQX	.	GT	./.
chr1	114515719	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114515720	.	T	.	.	LowGQX	.	GT	./.
chr1	114515721	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114515722	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	114515723	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515724	.	G	.	.	LowGQX	.	GT	./.
chr1	114515725	.	C	.	.	LowGQX	END=114515729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515730	.	C	.	.	LowGQX	.	GT	./.
chr1	114515731	.	T	.	.	LowGQX	END=114515732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515733	.	T	.	.	LowGQX	.	GT	./.
chr1	114515734	.	C	.	.	LowGQX	END=114515736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515737	.	A	.	.	LowGQX	END=114515738	GT	./.
chr1	114515739	.	G	.	.	LowGQX	END=114515740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515741	.	C	.	.	LowGQX	.	GT	./.
chr1	114515742	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515743	.	C	.	.	LowGQX	.	GT	./.
chr1	114515744	.	C	.	.	LowGQX	END=114515750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515751	.	T	.	.	LowGQX	END=114515753	GT	./.
chr1	114515754	.	C	.	.	LowGQX	END=114515763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515764	.	G	.	.	LowGQX	.	GT	./.
chr1	114515765	.	C	.	.	LowGQX	END=114515771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515772	.	C	.	.	LowGQX	.	GT	./.
chr1	114515773	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	114515774	.	C	.	.	LowGQX	END=114515780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515781	.	G	.	.	LowGQX	.	GT	./.
chr1	114515782	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515783	.	G	.	.	LowGQX	.	GT	./.
chr1	114515784	.	C	.	.	LowGQX	END=114515789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515790	.	C	.	.	LowGQX	END=114515792	GT	./.
chr1	114515793	.	C	.	.	LowGQX	END=114515794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515795	.	T	.	.	LowGQX	.	GT	./.
chr1	114515796	.	G	.	.	LowGQX	END=114515798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515799	.	C	.	.	LowGQX	.	GT	./.
chr1	114515800	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515801	.	G	.	.	LowGQX	END=114515802	GT	./.
chr1	114515803	.	C	.	.	LowGQX	END=114515806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515807	.	T	.	.	LowGQX	.	GT	./.
chr1	114515808	.	G	.	.	LowGQX	END=114515809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515810	.	T	.	.	LowGQX	.	GT	./.
chr1	114515811	.	C	.	.	LowGQX	END=114515826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515827	.	C	.	.	LowGQX	.	GT	./.
chr1	114515828	.	T	.	.	LowGQX	END=114515850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114515851	.	C	.	.	LowGQX	END=114515991	GT	./.
chr1	114515992	.	T	.	.	LowGQX	END=114516108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114516109	.	A	.	.	LowGQX	END=114516136	GT	./.
chr1	114522137	.	C	.	.	LowGQX	END=114522140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114522141	.	G	.	.	LowGQX	END=114522254	GT	./.
chr1	114522672	.	C	.	.	LowGQX	END=114522698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114522699	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	114522700	.	T	.	.	LowGQX	END=114522771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114522952	.	A	.	.	LowGQX	END=114523241	GT	./.
chr1	114523569	.	A	.	.	LowGQX	END=114523789	GT	./.
chr1	114523790	.	G	.	.	LowGQX	END=114523797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114523798	.	A	.	.	LowGQX	.	GT	./.
chr1	114523799	.	C	.	.	LowGQX	END=114523801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114523802	.	G	.	.	LowGQX	.	GT	./.
chr1	114523803	.	G	.	.	LowGQX	END=114523807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114523808	.	T	.	.	LowGQX	.	GT	./.
chr1	114523809	.	G	.	.	LowGQX	END=114523868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114523869	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	114523870	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114523871	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	114523872	.	G	.	.	LowGQX	END=114523878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114523879	.	A	.	10.70	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.05:60:0
chr1	114523880	.	A	.	.	LowGQX	END=114523910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	114523911	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	114523912	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	114523913	.	A	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	114523914	.	C	.	.	LowGQX	END=114523924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	114523925	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	114523926	.	G	.	.	LowGQX	END=114523929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	114523930	.	A	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	114523931	.	G	.	.	LowGQX	END=114523954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	114523955	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	114523956	.	G	.	.	LowGQX	END=114524006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114524007	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	114524008	.	G	.	.	LowGQX	END=114524012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114524013	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	114524014	.	G	.	.	LowGQX	END=114524028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114524029	.	T	.	.	LowGQX	.	GT	./.
chr1	114524030	.	A	.	.	LowGQX	END=114524034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114524035	.	A	.	.	LowGQX	END=114524395	GT	./.
chr1	114634619	.	T	.	.	LowGQX	END=114634718	GT	./.
chr1	114636367	.	A	.	.	LowGQX	END=114636466	GT	./.
chr1	114640347	.	A	.	.	LowGQX	END=114640501	GT	./.
chr1	114641714	.	A	.	.	LowGQX	END=114641731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114641732	.	C	.	.	LowGQX	.	GT	./.
chr1	114641733	.	T	.	.	LowGQX	END=114641748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114641749	.	A	.	.	LowGQX	.	GT	./.
chr1	114641750	.	C	.	.	LowGQX	END=114641753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114641754	.	A	.	.	LowGQX	.	GT	./.
chr1	114641755	.	T	.	.	LowGQX	END=114641779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114641780	.	A	.	.	LowGQX	.	GT	./.
chr1	114641781	.	G	.	.	LowGQX	END=114641790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114641791	.	T	.	.	LowGQX	END=114641819	GT	./.
chr1	114641820	.	C	.	.	LowGQX	END=114641822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114641823	.	T	.	.	LowGQX	.	GT	./.
chr1	114641824	.	A	.	.	LowGQX	END=114641827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114641828	.	T	.	.	LowGQX	.	GT	./.
chr1	114641829	.	T	.	.	LowGQX	END=114641858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114641859	.	A	.	.	LowGQX	.	GT	./.
chr1	114641860	.	C	.	.	LowGQX	END=114641889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114646221	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114646222	.	C	.	.	LowGQX	.	GT	./.
chr1	114646223	.	C	.	.	LowGQX	END=114646225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114646226	.	A	.	.	LowGQX	END=114646227	GT	./.
chr1	114646228	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114646229	.	A	.	.	LowGQX	END=114646230	GT	./.
chr1	114646231	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114646232	.	C	.	.	LowGQX	.	GT	./.
chr1	114646233	.	T	.	.	LowGQX	END=114646235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114646236	.	G	.	.	LowGQX	END=114646237	GT	./.
chr1	114646238	.	T	.	.	LowGQX	END=114646240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114646241	.	C	.	.	LowGQX	.	GT	./.
chr1	114646242	.	C	.	.	LowGQX	END=114646244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114646245	.	C	.	.	LowGQX	END=114646250	GT	./.
chr1	114646251	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114646252	.	A	.	.	LowGQX	.	GT	./.
chr1	114646253	.	G	.	.	LowGQX	END=114646254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114646255	.	T	.	.	LowGQX	END=114646260	GT	./.
chr1	114646261	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114646262	.	A	.	.	LowGQX	.	GT	./.
chr1	114646263	.	C	.	.	LowGQX	END=114646266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114646267	.	A	.	.	LowGQX	.	GT	./.
chr1	114646268	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114646269	.	C	.	.	LowGQX	.	GT	./.
chr1	114646270	.	A	.	.	LowGQX	END=114646273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114646274	.	T	.	.	LowGQX	END=114646276	GT	./.
chr1	114646277	.	G	.	.	LowGQX	END=114646279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114646280	.	T	.	.	LowGQX	END=114646345	GT	./.
chr1	114680115	.	A	.	.	LowGQX	END=114680145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114680146	.	T	.	.	LowGQX	END=114680314	GT	./.
chr1	114680315	.	G	.	.	LowGQX	END=114680509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114680510	.	G	.	.	LowGQX	.	GT	./.
chr1	114680511	.	G	.	.	LowGQX	END=114680539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114680540	.	C	.	.	LowGQX	.	GT	./.
chr1	114680541	.	G	.	.	LowGQX	END=114680588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	114680589	.	T	.	.	LowGQX	END=114680677	GT	./.
chr1	114682235	.	A	.	.	LowGQX	END=114682239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682240	.	G	.	.	LowGQX	.	GT	./.
chr1	114682241	.	T	.	.	LowGQX	END=114682242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682243	.	G	.	.	LowGQX	.	GT	./.
chr1	114682244	.	A	.	.	LowGQX	END=114682251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682252	.	G	.	.	LowGQX	.	GT	./.
chr1	114682253	.	G	.	.	LowGQX	END=114682261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682262	.	T	.	.	LowGQX	.	GT	./.
chr1	114682263	.	T	.	.	LowGQX	END=114682267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682268	.	G	.	.	LowGQX	.	GT	./.
chr1	114682269	.	C	.	.	LowGQX	END=114682276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682277	.	G	.	.	LowGQX	.	GT	./.
chr1	114682278	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682279	.	G	.	.	LowGQX	.	GT	./.
chr1	114682280	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682281	.	G	.	.	LowGQX	.	GT	./.
chr1	114682282	.	T	.	.	LowGQX	END=114682283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682284	.	A	.	.	LowGQX	.	GT	./.
chr1	114682285	.	C	.	.	LowGQX	END=114682288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682289	.	T	.	.	LowGQX	.	GT	./.
chr1	114682290	.	G	.	.	LowGQX	END=114682294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682295	.	G	.	.	LowGQX	.	GT	./.
chr1	114682296	.	C	.	.	LowGQX	END=114682300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682301	.	T	.	.	LowGQX	.	GT	./.
chr1	114682302	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682303	.	A	.	.	LowGQX	.	GT	./.
chr1	114682304	.	C	.	.	LowGQX	END=114682308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682309	.	A	.	.	LowGQX	.	GT	./.
chr1	114682310	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682311	.	C	.	.	LowGQX	.	GT	./.
chr1	114682312	.	T	.	.	LowGQX	END=114682314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682315	.	A	.	.	LowGQX	.	GT	./.
chr1	114682316	.	C	.	.	LowGQX	END=114682318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682319	.	C	.	.	LowGQX	.	GT	./.
chr1	114682320	.	A	.	.	LowGQX	END=114682326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682327	.	A	.	.	LowGQX	END=114682411	GT	./.
chr1	114682412	.	C	.	.	LowGQX	END=114682413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682414	.	C	.	.	LowGQX	.	GT	./.
chr1	114682415	.	T	.	.	LowGQX	END=114682419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682420	.	C	.	.	LowGQX	.	GT	./.
chr1	114682421	.	T	.	.	LowGQX	END=114682422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682423	.	G	.	.	LowGQX	.	GT	./.
chr1	114682424	.	G	.	.	LowGQX	END=114682427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682428	.	C	.	.	LowGQX	.	GT	./.
chr1	114682429	.	T	.	.	LowGQX	END=114682432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682433	.	G	.	.	LowGQX	.	GT	./.
chr1	114682434	.	G	.	.	LowGQX	END=114682439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682440	.	C	.	.	LowGQX	.	GT	./.
chr1	114682441	.	A	.	.	LowGQX	END=114682449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682450	.	T	.	.	LowGQX	.	GT	./.
chr1	114682451	.	T	.	.	LowGQX	END=114682457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682458	.	A	.	.	LowGQX	.	GT	./.
chr1	114682459	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682460	.	A	.	.	LowGQX	.	GT	./.
chr1	114682461	.	G	.	.	LowGQX	END=114682472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682473	.	C	.	.	LowGQX	.	GT	./.
chr1	114682474	.	T	.	.	LowGQX	END=114682479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682480	.	T	.	.	LowGQX	.	GT	./.
chr1	114682481	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682482	.	C	.	.	LowGQX	.	GT	./.
chr1	114682483	.	C	.	.	LowGQX	END=114682490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682491	.	C	.	.	LowGQX	END=114682492	GT	./.
chr1	114682493	.	T	.	.	LowGQX	END=114682506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682507	.	C	.	.	LowGQX	.	GT	./.
chr1	114682508	.	A	.	.	LowGQX	END=114682511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682512	.	G	.	.	LowGQX	.	GT	./.
chr1	114682513	.	A	.	.	LowGQX	END=114682536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682537	.	G	.	.	LowGQX	.	GT	./.
chr1	114682538	.	C	.	.	LowGQX	END=114682566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682567	.	A	.	.	LowGQX	.	GT	./.
chr1	114682568	.	G	.	.	LowGQX	END=114682583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114682584	.	G	.	.	LowGQX	.	GT	./.
chr1	114682585	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114696231	.	C	.	.	LowGQX	END=114696415	GT	./.
chr1	114940268	.	T	.	.	LowGQX	END=114940484	GT	./.
chr1	114940538	.	G	.	.	LowGQX	END=114940637	GT	./.
chr1	114942047	.	A	.	.	LowGQX	END=114942233	GT	./.
chr1	114943999	.	T	.	.	LowGQX	END=114944098	GT	./.
chr1	114945380	.	A	.	.	LowGQX	END=114945395	GT	./.
chr1	114945396	.	G	.	.	LowGQX	END=114945507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114948022	.	T	.	.	LowGQX	END=114948023	GT	./.
chr1	114948024	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114948025	.	C	.	.	LowGQX	END=114948026	GT	./.
chr1	114948027	.	G	.	.	LowGQX	END=114948031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114948032	.	C	.	.	LowGQX	END=114948383	GT	./.
chr1	114949561	.	A	.	.	LowGQX	END=114949571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114949572	.	A	.	.	LowGQX	.	GT	./.
chr1	114949573	.	C	.	.	LowGQX	END=114949577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114949578	.	C	.	.	LowGQX	.	GT	./.
chr1	114949579	.	C	.	.	LowGQX	END=114949595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114949596	.	T	.	.	LowGQX	.	GT	./.
chr1	114949597	.	T	.	.	LowGQX	END=114949607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114949608	.	A	.	.	LowGQX	END=114949609	GT	./.
chr1	114949610	.	C	.	.	LowGQX	END=114949614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114949615	.	G	.	.	LowGQX	.	GT	./.
chr1	114949616	.	A	.	.	LowGQX	END=114949618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114949619	.	A	.	.	LowGQX	.	GT	./.
chr1	114949620	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114949621	.	C	.	.	LowGQX	.	GT	./.
chr1	114949622	.	T	.	.	LowGQX	END=114949627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114949628	.	T	.	.	LowGQX	END=114949629	GT	./.
chr1	114949630	.	T	.	.	LowGQX	END=114949633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114949634	.	C	.	.	LowGQX	.	GT	./.
chr1	114949635	.	T	.	.	LowGQX	END=114949636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114949637	.	C	.	.	LowGQX	.	GT	./.
chr1	114949638	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114949639	.	G	.	.	LowGQX	END=114949703	GT	./.
chr1	114949704	.	T	.	.	LowGQX	END=114949705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114949706	.	T	.	.	LowGQX	.	GT	./.
chr1	114949707	.	T	.	.	LowGQX	END=114949708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114949709	.	C	.	.	LowGQX	.	GT	./.
chr1	114949710	.	T	.	.	LowGQX	END=114949714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114949715	.	A	.	.	LowGQX	END=114949716	GT	./.
chr1	114949717	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114949718	.	C	.	.	LowGQX	.	GT	./.
chr1	114949719	.	A	.	.	LowGQX	END=114949721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114949722	.	G	.	.	LowGQX	.	GT	./.
chr1	114949723	.	C	.	.	LowGQX	END=114949724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114951227	.	A	.	.	LowGQX	END=114951380	GT	./.
chr1	114952754	.	G	.	.	LowGQX	END=114952940	GT	./.
chr1	114962988	.	A	.	.	LowGQX	END=114963087	GT	./.
chr1	114964056	.	A	.	.	LowGQX	END=114964260	GT	./.
chr1	114967211	.	A	.	.	LowGQX	END=114967246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114967247	.	T	.	.	LowGQX	END=114967379	GT	./.
chr1	114968069	.	A	.	.	LowGQX	END=114968139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	114968140	.	A	.	.	LowGQX	END=114968153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114968154	.	G	.	.	LowGQX	END=114968196	GT	./.
chr1	114968197	.	T	.	.	LowGQX	END=114968246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114968247	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	114968248	.	A	.	.	LowGQX	END=114968347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114969797	.	A	.	.	LowGQX	END=114969821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114969822	.	C	.	.	LowGQX	.	GT	./.
chr1	114969823	.	A	.	.	LowGQX	END=114969874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114969875	.	A	.	.	LowGQX	.	GT	./.
chr1	114969876	.	T	.	.	LowGQX	END=114969879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114969880	.	A	.	.	LowGQX	.	GT	./.
chr1	114969881	.	C	.	.	LowGQX	END=114969918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	114970368	.	A	.	.	LowGQX	END=114970518	GT	./.
chr1	114973358	.	C	.	.	LowGQX	END=114973536	GT	./.
chr1	114976237	.	A	.	.	LowGQX	END=114976357	GT	./.
chr1	115005724	.	A	.	.	LowGQX	END=115005860	GT	./.
chr1	115006032	.	A	.	.	LowGQX	END=115006211	GT	./.
chr1	115006890	.	A	.	.	LowGQX	END=115006913	GT	./.
chr1	115006914	.	C	.	.	LowGQX	END=115007009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115007010	.	A	.	.	LowGQX	.	GT	./.
chr1	115007011	.	C	.	.	LowGQX	END=115007012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115053170	.	A	.	.	LowGQX	END=115053264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115053265	.	A	.	.	LowGQX	END=115053705	GT	./.
chr1	115110749	.	T	.	.	LowGQX	END=115110879	GT	./.
chr1	115112604	.	G	.	.	LowGQX	END=115112703	GT	./.
chr1	115113297	.	C	.	.	LowGQX	END=115113448	GT	./.
chr1	115118209	.	A	.	.	LowGQX	END=115118398	GT	./.
chr1	115119295	.	T	.	.	LowGQX	END=115119394	GT	./.
chr1	115123917	.	T	.	.	LowGQX	END=115124016	GT	./.
chr1	115124117	.	C	.	.	LowGQX	END=115124174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115124175	.	A	.	.	LowGQX	.	GT	./.
chr1	115124176	.	C	.	.	LowGQX	END=115124177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115124178	.	A	.	.	LowGQX	.	GT	./.
chr1	115124179	.	C	.	.	LowGQX	END=115124192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115124193	.	A	.	.	LowGQX	.	GT	./.
chr1	115124194	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115124195	.	C	.	.	LowGQX	.	GT	./.
chr1	115124196	.	A	.	.	LowGQX	END=115124210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115124211	.	A	.	.	LowGQX	.	GT	./.
chr1	115124212	.	T	.	.	LowGQX	END=115124216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115128187	.	T	.	.	LowGQX	END=115128208	GT	./.
chr1	115128209	.	C	.	.	LowGQX	END=115128246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115128247	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	115128248	.	G	.	.	LowGQX	END=115128286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115130000	.	C	.	.	LowGQX	END=115130002	GT	./.
chr1	115130003	.	C	.	.	LowGQX	END=115130004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115130005	.	A	.	.	LowGQX	END=115130008	GT	./.
chr1	115130009	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115130010	.	A	.	.	LowGQX	END=115130011	GT	./.
chr1	115130012	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115130013	.	C	.	.	LowGQX	.	GT	./.
chr1	115130014	.	T	.	.	LowGQX	END=115130015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115130016	.	C	.	.	LowGQX	.	GT	./.
chr1	115130017	.	G	.	.	LowGQX	END=115130018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115130019	.	A	.	.	LowGQX	.	GT	./.
chr1	115130020	.	A	.	.	LowGQX	END=115130023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115130024	.	T	.	.	LowGQX	.	GT	./.
chr1	115130025	.	C	.	.	LowGQX	END=115130027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115130028	.	T	.	.	LowGQX	.	GT	./.
chr1	115130029	.	T	.	.	LowGQX	END=115130033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115130034	.	C	.	.	LowGQX	END=115130099	GT	./.
chr1	115130335	.	A	.	.	LowGQX	END=115130483	GT	./.
chr1	115130484	.	C	.	.	LowGQX	END=115130486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115130487	.	T	.	.	LowGQX	.	GT	./.
chr1	115130488	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115130489	.	A	.	.	LowGQX	END=115130490	GT	./.
chr1	115130491	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115130492	.	G	.	.	LowGQX	.	GT	./.
chr1	115130493	.	T	.	.	LowGQX	END=115130498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115130499	.	T	.	.	LowGQX	.	GT	./.
chr1	115130500	.	C	.	.	LowGQX	END=115130521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115130522	.	T	.	.	LowGQX	END=115130524	GT	./.
chr1	115130525	.	A	.	.	LowGQX	END=115130533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115130534	.	C	.	.	LowGQX	END=115130535	GT	./.
chr1	115130536	.	G	.	.	LowGQX	END=115130564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115130565	.	G	.	.	LowGQX	.	GT	./.
chr1	115130566	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115130567	.	G	.	.	LowGQX	.	GT	./.
chr1	115130568	.	T	.	.	LowGQX	END=115130573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115130574	.	C	.	.	LowGQX	.	GT	./.
chr1	115130575	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115137092	.	A	.	.	LowGQX	END=115137201	GT	./.
chr1	115138424	.	C	.	.	LowGQX	END=115138523	GT	./.
chr1	115141893	.	A	.	.	LowGQX	END=115142047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115142048	.	A	.	.	LowGQX	END=115142069	GT	./.
chr1	115142070	.	G	.	.	LowGQX	END=115142074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115142823	.	A	.	.	LowGQX	END=115142896	GT	./.
chr1	115142897	.	A	.	.	LowGQX	END=115142975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115143439	.	A	.	.	LowGQX	END=115143583	GT	./.
chr1	115144118	.	T	.	.	LowGQX	END=115144217	GT	./.
chr1	115144731	.	A	.	.	LowGQX	END=115144830	GT	./.
chr1	115147491	.	A	.	.	LowGQX	END=115147654	GT	./.
chr1	115151305	.	A	.	.	LowGQX	END=115151504	GT	./.
chr1	115153667	.	C	.	.	LowGQX	END=115153766	GT	./.
chr1	115160955	.	C	.	.	LowGQX	END=115161105	GT	./.
chr1	115164504	.	T	.	.	LowGQX	END=115164686	GT	./.
chr1	115165606	.	A	.	.	LowGQX	END=115165722	GT	./.
chr1	115166086	.	T	.	.	LowGQX	END=115166266	GT	./.
chr1	115167798	.	A	.	.	LowGQX	END=115167966	GT	./.
chr1	115167967	.	A	.	.	LowGQX	END=115167996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115167997	.	A	.	.	LowGQX	.	GT	./.
chr1	115167998	.	C	.	.	LowGQX	END=115168062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115168063	.	C	.	.	LowGQX	.	GT	./.
chr1	115168064	.	A	.	.	LowGQX	END=115168118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115168119	.	T	.	.	LowGQX	.	GT	./.
chr1	115168120	.	T	.	.	LowGQX	END=115168127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115168128	.	T	.	.	LowGQX	.	GT	./.
chr1	115168129	.	A	.	.	LowGQX	END=115168274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115168275	.	C	.	.	LowGQX	.	GT	./.
chr1	115168276	.	A	.	.	LowGQX	END=115168462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115168463	.	A	.	.	LowGQX	END=115168607	GT	./.
chr1	115215684	.	C	.	.	PASS	END=115215769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	115215770	.	T	.	.	PASS	END=115215794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	115215795	.	G	.	.	PASS	END=115215858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	115215859	.	T	.	.	PASS	END=115215939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	115215940	.	T	.	.	PASS	END=115215944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	115216209	.	A	.	.	PASS	END=115216222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	115216223	.	T	.	.	PASS	END=115216277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	115216278	.	C	.	.	PASS	END=115216317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:96:60
chr1	115216318	.	G	.	.	PASS	END=115216421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	115216479	.	G	.	.	PASS	END=115216515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	115216516	.	A	.	.	PASS	END=115216547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	115216548	.	C	.	.	PASS	END=115216557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	115216558	.	T	.	.	PASS	END=115216682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	115216683	.	C	.	.	PASS	END=115216702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	115216703	.	T	.	.	PASS	END=115216708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	115216709	.	A	.	.	PASS	END=115216744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	115217322	.	A	.	.	PASS	END=115217431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	115217432	.	G	.	.	PASS	END=115217447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	115217448	.	T	.	.	PASS	END=115217469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	115217470	.	A	.	.	PASS	END=115217496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	115217497	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:63:60
chr1	115217498	.	G	.	.	PASS	END=115217519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	115217520	.	T	.	.	PASS	END=115217541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	115217542	.	G	.	.	PASS	END=115217544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	115218100	.	G	.	.	PASS	END=115218123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	115218124	.	T	.	.	PASS	END=115218158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	115218159	.	G	.	.	PASS	END=115218241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	115218242	.	G	.	.	PASS	END=115218272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	115218273	.	A	.	.	PASS	END=115218286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	115218287	.	C	.	.	PASS	END=115218320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	115218321	.	G	.	.	PASS	END=115218331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	115218332	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:48:60
chr1	115218333	.	C	.	.	PASS	END=115218343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:84:60
chr1	115218344	.	T	.	.	PASS	END=115218345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	115218346	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:42:60
chr1	115218347	.	A	.	.	PASS	END=115218365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	115218447	.	G	.	.	PASS	END=115218464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	115218465	.	C	.	.	PASS	END=115218482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:87:60
chr1	115218483	.	A	.	.	PASS	END=115218517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	115218518	.	G	.	.	PASS	END=115218535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	115218536	.	G	.	.	PASS	END=115218588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	115218589	.	A	.	.	PASS	END=115218668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	115218669	.	A	.	.	PASS	END=115218675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	115219921	.	A	.	.	PASS	END=115219940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	115219941	.	G	.	.	PASS	END=115219963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	115219964	.	G	.	.	PASS	END=115220012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	115220013	.	G	.	.	PASS	END=115220079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	115220080	.	G	.	.	PASS	END=115220098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	115220099	.	G	.	.	PASS	END=115220118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	115220119	.	A	.	.	PASS	END=115220135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	115220136	.	C	.	.	PASS	END=115220161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	115220162	.	C	.	.	PASS	END=115220169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	115220170	.	T	.	.	PASS	END=115220186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	115220480	.	T	.	.	LowGQX	END=115220483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	115220484	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	115220485	.	T	.	.	PASS	END=115220493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	115220494	.	A	.	.	PASS	END=115220503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	115220504	.	C	.	.	PASS	END=115220519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	115220520	.	T	.	.	PASS	END=115220521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	115220522	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:49:60
chr1	115220523	.	C	.	.	PASS	END=115220525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	115220526	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:65:60
chr1	115220527	.	T	.	.	PASS	END=115220541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	115220542	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:75:60
chr1	115220543	.	G	.	.	PASS	END=115220562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	115220563	.	T	.	.	PASS	END=115220657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	115220658	.	C	.	.	PASS	END=115220678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	115220679	.	G	.	.	PASS	END=115220698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	115220699	.	C	.	.	PASS	END=115220706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	115220707	.	T	.	.	PASS	END=115220713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	115220903	.	A	.	.	PASS	END=115220913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	115220914	.	T	.	.	PASS	END=115220922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	115220923	.	G	.	.	PASS	END=115220936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	115220937	.	T	.	.	PASS	END=115220942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	115220943	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:33:60
chr1	115220944	.	T	.	.	PASS	END=115220959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr1	115220960	.	A	.	.	PASS	END=115220972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	115220973	.	T	.	.	PASS	END=115220982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	115220983	.	G	.	.	PASS	END=115221005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	115221006	.	T	.	.	PASS	END=115221049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	115221050	.	A	.	.	PASS	END=115221133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	115221134	.	G	.	.	PASS	END=115221156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	115221157	.	A	.	.	PASS	END=115221198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	115221199	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:99:60
chr1	115222149	.	A	.	.	PASS	END=115222175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	115222176	.	C	.	.	PASS	END=115222264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	115222265	.	T	.	.	PASS	END=115222326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	115222327	.	T	.	.	PASS	END=115222380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	115222829	.	T	.	.	PASS	END=115222845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	115222846	.	A	.	.	PASS	END=115222861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	115222862	.	G	.	.	PASS	END=115222872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	115222873	.	C	.	.	PASS	END=115222920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	115222921	.	G	.	.	PASS	END=115222952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	115222953	.	G	.	.	PASS	END=115223053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	115223054	.	T	.	.	PASS	END=115223079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	115223080	.	C	.	.	PASS	END=115223103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	115223104	.	T	.	.	PASS	END=115223127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	115223128	.	T	.	.	PASS	END=115223140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	115223141	.	T	.	.	PASS	END=115223148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	115223149	.	C	.	.	PASS	END=115223150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	115225712	.	A	.	.	LowGQX	END=115225811	GT	./.
chr1	115226769	.	T	.	.	PASS	END=115226785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	115226786	.	A	.	.	PASS	END=115226801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr1	115226802	.	A	.	.	PASS	END=115226865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	115226866	.	C	.	.	PASS	END=115226921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	115226922	.	T	.	.	PASS	END=115226930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	115226931	.	T	.	.	PASS	END=115226990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	115226991	.	A	.	.	PASS	END=115227033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:95:60
chr1	115227034	.	C	.	.	PASS	END=115227036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	115229315	.	A	.	.	PASS	END=115229317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	115229318	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:26:60
chr1	115229319	.	T	.	.	PASS	END=115229333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	115229334	.	T	.	.	PASS	END=115229354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	115229355	.	G	.	.	PASS	END=115229364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	115229365	.	C	.	.	PASS	END=115229381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	115229382	.	C	.	.	PASS	END=115229414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	115229415	.	G	.	.	PASS	END=115229455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	115229456	.	G	.	.	PASS	END=115229522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	115229523	.	C	.	.	PASS	END=115229579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	115229580	.	T	.	.	PASS	END=115229611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	115229612	.	A	.	.	PASS	END=115229634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	115231131	.	A	.	.	PASS	END=115231138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	115231139	.	C	.	.	PASS	END=115231144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	115231145	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:39:60
chr1	115231146	.	T	.	.	PASS	END=115231149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	115231150	.	A	.	.	PASS	END=115231155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	115231156	.	C	.	.	PASS	END=115231161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	115231162	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:63:60
chr1	115231163	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:36:60
chr1	115231164	.	T	.	.	PASS	END=115231165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	115231166	.	C	.	.	PASS	END=115231191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	115231192	.	C	.	.	PASS	END=115231219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	115231220	.	G	.	.	PASS	END=115231258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	115231259	.	G	.	.	PASS	END=115231300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	115231301	.	T	.	.	PASS	END=115231357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	115231358	.	A	.	.	PASS	END=115231389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	115231390	.	T	.	.	PASS	END=115231413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	115231491	.	C	.	.	PASS	END=115231496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr1	115231497	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:21:60
chr1	115231498	.	A	.	.	PASS	END=115231502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	115231503	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	115231504	.	C	.	.	PASS	END=115231513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr1	115231514	.	T	.	.	PASS	END=115231516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	115231517	.	C	.	.	PASS	END=115231529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	115231530	.	T	.	.	PASS	END=115231531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	115231532	.	C	.	.	PASS	END=115231542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	115231543	.	C	.	.	PASS	END=115231552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:39:60
chr1	115231553	.	A	.	.	PASS	END=115231567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	115231568	.	T	.	.	LowGQX	END=115231569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	115231570	.	G	.	.	PASS	END=115231571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	115231572	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	115231573	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	115231574	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	115231575	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	115231576	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	115231577	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	115231578	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	115231579	.	C	.	.	PASS	END=115231580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	115231581	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	115231582	.	A	.	.	PASS	END=115231583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	115231584	.	A	.	.	LowGQX	END=115231590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	115236003	.	A	.	.	PASS	END=115236068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	115236069	.	C	.	.	PASS	END=115236119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	115238020	.	A	.	.	PASS	END=115238028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	115238029	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:23:60
chr1	115238030	.	A	.	.	PASS	END=115238034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	115238035	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:33:60
chr1	115238036	.	A	.	.	PASS	END=115238037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	115238038	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:39:60
chr1	115238039	.	A	.	.	PASS	END=115238040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	115238041	.	C	.	.	PASS	END=115238047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:60
chr1	115238048	.	C	.	.	PASS	END=115238051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	115238052	.	A	.	.	PASS	END=115238054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	115238055	.	C	.	.	PASS	END=115238058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	115238059	.	T	.	.	PASS	END=115238064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	115238065	.	A	.	.	PASS	END=115238068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr1	115238069	.	A	.	.	PASS	END=115238077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	115238078	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:45:60
chr1	115238079	.	T	.	.	PASS	END=115238086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	115238087	.	A	.	.	PASS	END=115238092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	115238093	.	T	.	.	PASS	END=115238110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	115238111	.	T	.	.	PASS	END=115238129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	115238130	.	A	.	.	PASS	END=115238191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	115251105	.	T	.	.	PASS	END=115251148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	115251149	.	C	.	.	PASS	END=115251151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	115251152	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:54:60
chr1	115251153	.	T	.	.	PASS	END=115251165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	115251166	.	A	.	.	PASS	END=115251185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	115251186	.	A	.	.	PASS	END=115251252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	115251253	.	G	.	.	PASS	END=115251313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	115251314	.	C	.	.	PASS	END=115251326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	115252139	.	G	.	.	PASS	END=115252153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	115252154	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:27:60
chr1	115252155	.	A	.	.	PASS	END=115252170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	115252171	.	G	.	.	PASS	END=115252180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	115252181	.	G	.	.	PASS	END=115252216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr1	115252217	.	G	.	.	PASS	END=115252247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	115252248	.	T	.	.	PASS	END=115252292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	115252293	.	T	.	.	PASS	END=115252336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	115252337	.	C	.	.	PASS	END=115252393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	115252394	.	A	.	.	PASS	END=115252400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	115256370	.	A	.	.	PASS	END=115256402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	115256403	.	A	.	.	PASS	END=115256450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	115256451	.	C	.	.	PASS	END=115256498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	115256499	.	T	.	.	PASS	END=115256522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	115256523	.	T	.	.	PASS	END=115256532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	115256533	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:72:60
chr1	115256534	.	A	.	.	PASS	END=115256548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	115256549	.	G	.	.	PASS	END=115256551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	115256552	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:39:60
chr1	115256553	.	A	.	.	PASS	END=115256576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	115256577	.	A	.	.	PASS	END=115256589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	115256590	.	T	.	.	PASS	END=115256600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	115256601	.	T	.	.	PASS	END=115256606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	115256607	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	115256608	.	G	.	.	PASS	END=115256613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	115256614	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	115256615	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	115256616	.	T	.	.	LowGQX	END=115256620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	115256621	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	115256622	.	G	.	.	LowGQX	END=115256624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	115256625	.	A	.	.	LowGQX	.	GT	./.
chr1	115256626	.	G	.	.	LowGQX	END=115256628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115256629	.	A	.	.	LowGQX	END=115256633	GT	./.
chr1	115256634	.	G	.	.	LowGQX	END=115256635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	115256636	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:6:60
chr1	115256637	.	A	.	.	PASS	END=115256639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	115256640	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:12:60
chr1	115256641	.	T	.	.	PASS	END=115256650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	115258620	.	T	.	.	PASS	END=115258639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	115258640	.	A	.	.	PASS	END=115258649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	115258650	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:60:60
chr1	115258651	.	G	.	.	PASS	END=115258669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	115258670	.	C	.	.	PASS	END=115258690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	115258691	.	C	.	.	PASS	END=115258775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	115258776	.	A	.	.	PASS	END=115258799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	115258800	.	T	.	.	PASS	END=115258827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	115258828	.	G	.	.	PASS	END=115258832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	115260764	.	A	.	.	PASS	END=115260863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	115261232	.	A	.	.	PASS	END=115261271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	115261272	.	T	.	.	PASS	END=115261360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	115261361	.	C	.	.	PASS	END=115261368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	115262198	.	A	.	.	PASS	END=115262225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	115262226	.	G	.	.	PASS	END=115262266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	115262267	.	C	.	.	PASS	END=115262360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr1	115262361	.	A	.	.	PASS	END=115262365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr1	115263158	.	A	.	.	PASS	END=115263174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	115263175	.	T	.	.	PASS	END=115263189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	115263190	.	G	.	.	PASS	END=115263239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	115263240	.	C	.	.	PASS	END=115263317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:260:99:60
chr1	115263318	.	A	.	.	PASS	END=115263335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	115263336	.	C	.	.	PASS	END=115263340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	115266452	.	C	.	.	PASS	END=115266495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	115266496	.	A	.	.	PASS	END=115266532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	115266533	.	T	.	.	PASS	END=115266625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	115267840	.	A	.	.	PASS	END=115267898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	115267899	.	A	.	.	PASS	END=115267926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	115267927	.	C	.	.	PASS	END=115267956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	115268830	.	A	.	.	PASS	END=115268872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	115268873	.	A	.	.	PASS	END=115268917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	115268918	.	C	.	.	PASS	END=115268979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	115268980	.	T	.	.	PASS	END=115269007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	115269008	.	C	.	.	PASS	END=115269009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	115269602	.	G	.	.	PASS	END=115269640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	115269641	.	T	.	.	PASS	END=115269713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	115272877	.	A	.	.	PASS	END=115272906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	115272907	.	G	.	.	PASS	END=115272956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	115272957	.	G	.	.	PASS	END=115273045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	115273127	.	A	.	.	PASS	END=115273173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	115273174	.	C	.	.	PASS	END=115273221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	115273222	.	C	.	.	PASS	END=115273271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	115275223	.	A	.	.	PASS	END=115275255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	115275256	.	G	.	.	PASS	END=115275396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	115275397	.	A	.	.	PASS	END=115275432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	115275433	.	T	.	.	PASS	END=115275439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	115276351	.	A	.	.	PASS	END=115276447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	115276448	.	A	.	.	PASS	END=115276479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	115276480	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:98:99:60
chr1	115276608	.	A	.	.	PASS	END=115276636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	115276637	.	A	.	.	PASS	END=115276713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	115276714	.	C	.	.	PASS	END=115276740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	115277001	.	G	.	.	PASS	END=115277035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	115277036	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:69:60
chr1	115277037	.	T	.	.	PASS	END=115277074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	115277075	.	A	.	.	PASS	END=115277139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	115277140	.	C	.	.	PASS	END=115277144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	115277145	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:59:60
chr1	115277146	.	T	.	.	PASS	END=115277153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	115279377	.	A	.	.	PASS	END=115279384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	115279385	.	T	.	.	PASS	END=115279454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	115279455	.	T	.	.	PASS	END=115279478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	115280089	.	T	.	.	PASS	END=115280109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	115280110	.	T	.	.	PASS	END=115280132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	115280133	.	C	.	.	PASS	END=115280188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	115280582	.	A	.	.	PASS	END=115280633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	115280634	.	G	.	.	PASS	END=115280695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	115282311	.	A	.	.	PASS	END=115282338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	115282339	.	C	.	.	PASS	END=115282378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	115282379	.	G	.	.	PASS	END=115282475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	115282476	.	T	.	.	PASS	END=115282491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	115282492	.	A	.	.	PASS	END=115282513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	115284147	.	C	.	.	PASS	END=115284236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	115284237	.	C	.	.	PASS	END=115284258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	115284259	.	T	.	.	PASS	END=115284281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	115284282	.	C	.	.	PASS	END=115284285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	115316890	.	A	.	.	LowGQX	END=115316899	GT	./.
chr1	115316900	.	T	.	.	LowGQX	END=115316995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115318965	.	A	.	.	LowGQX	END=115319124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115321761	.	A	.	.	LowGQX	END=115321873	GT	./.
chr1	115321874	.	A	.	.	LowGQX	END=115321907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	115322729	.	A	.	.	LowGQX	END=115322739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115322740	.	C	.	.	LowGQX	.	GT	./.
chr1	115322741	.	C	.	.	LowGQX	END=115322743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115322744	.	T	.	.	LowGQX	.	GT	./.
chr1	115322745	.	T	.	.	LowGQX	END=115322749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115322750	.	G	.	.	LowGQX	.	GT	./.
chr1	115322751	.	T	.	.	LowGQX	END=115322764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115322765	.	G	.	.	LowGQX	END=115322822	GT	./.
chr1	115322823	.	G	.	.	LowGQX	END=115322824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115322825	.	A	.	.	LowGQX	END=115322826	GT	./.
chr1	115322827	.	C	.	.	LowGQX	END=115322828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115322829	.	T	.	.	LowGQX	.	GT	./.
chr1	115322830	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115322831	.	T	.	.	LowGQX	.	GT	./.
chr1	115322832	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115322833	.	G	.	.	LowGQX	END=115322836	GT	./.
chr1	115322837	.	C	.	.	LowGQX	END=115322838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115323036	.	T	.	.	LowGQX	END=115323230	GT	./.
chr1	115398084	.	A	.	.	LowGQX	END=115398181	GT	./.
chr1	115398182	.	A	.	.	LowGQX	END=115398195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115399187	.	T	.	.	LowGQX	END=115399286	GT	./.
chr1	115399825	.	T	.	.	LowGQX	END=115399924	GT	./.
chr1	115400042	.	T	.	.	LowGQX	END=115400141	GT	./.
chr1	115401166	.	A	.	.	LowGQX	END=115401334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115402292	.	C	.	.	LowGQX	END=115402447	GT	./.
chr1	115403285	.	T	.	.	LowGQX	END=115403443	GT	./.
chr1	115417055	.	A	.	.	LowGQX	END=115417206	GT	./.
chr1	115418675	.	A	.	.	LowGQX	END=115418762	GT	./.
chr1	115418763	.	G	.	.	LowGQX	END=115418774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115419286	.	A	.	.	LowGQX	END=115419444	GT	./.
chr1	115420713	.	A	.	.	LowGQX	END=115420872	GT	./.
chr1	115428094	.	A	.	.	LowGQX	END=115428253	GT	./.
chr1	115428744	.	A	.	.	LowGQX	END=115428932	GT	./.
chr1	115430231	.	T	.	.	LowGQX	END=115430330	GT	./.
chr1	115438050	.	T	.	.	LowGQX	END=115438066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115438067	.	A	.	.	LowGQX	.	GT	./.
chr1	115438068	.	G	.	.	LowGQX	END=115438069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115438070	.	A	.	.	LowGQX	.	GT	./.
chr1	115438071	.	G	.	.	LowGQX	END=115438082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115438083	.	C	.	.	LowGQX	.	GT	./.
chr1	115438084	.	T	.	.	LowGQX	END=115438095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115438096	.	A	.	.	LowGQX	END=115438149	GT	./.
chr1	115452946	.	C	.	.	LowGQX	END=115453124	GT	./.
chr1	115454048	.	A	.	.	LowGQX	END=115454205	GT	./.
chr1	115455652	.	A	.	.	LowGQX	END=115455821	GT	./.
chr1	115456524	.	G	.	.	LowGQX	END=115456681	GT	./.
chr1	115466008	.	T	.	.	LowGQX	END=115466160	GT	./.
chr1	115468881	.	T	.	.	LowGQX	END=115468980	GT	./.
chr1	115469104	.	T	.	.	LowGQX	END=115469203	GT	./.
chr1	115486908	.	C	.	.	LowGQX	END=115487127	GT	./.
chr1	115487441	.	T	.	.	LowGQX	END=115487605	GT	./.
chr1	115488847	.	G	.	.	LowGQX	END=115489057	GT	./.
chr1	115489795	.	A	.	.	LowGQX	END=115489954	GT	./.
chr1	115520106	.	A	.	.	LowGQX	END=115520350	GT	./.
chr1	115523955	.	A	.	.	LowGQX	END=115524088	GT	./.
chr1	115524089	.	C	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	115524090	.	T	.	.	LowGQX	END=115524093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115524094	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	115524095	.	A	.	.	LowGQX	END=115524114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	115524115	.	A	.	.	LowGQX	END=115524119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	115524120	.	C	.	8.19	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.02:60:0
chr1	115524121	.	A	.	.	LowGQX	END=115524129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	115524130	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	115524131	.	A	.	.	LowGQX	END=115524154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	115527344	.	A	.	.	LowGQX	.	GT	./.
chr1	115527345	.	G	.	.	LowGQX	END=115527397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115527398	.	T	.	.	LowGQX	.	GT	./.
chr1	115527399	.	G	.	.	LowGQX	END=115527491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115537314	.	T	.	.	LowGQX	END=115537413	GT	./.
chr1	115537501	.	A	.	.	LowGQX	END=115537569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115537570	.	A	.	.	LowGQX	.	GT	./.
chr1	115537571	.	C	.	.	LowGQX	END=115537607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115537608	.	A	.	.	LowGQX	.	GT	./.
chr1	115537609	.	A	.	.	LowGQX	END=115537617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115537618	.	A	.	.	LowGQX	.	GT	./.
chr1	115537619	.	A	.	.	LowGQX	END=115537623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115537624	.	A	.	.	LowGQX	END=115537625	GT	./.
chr1	115537626	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115537627	.	A	.	.	LowGQX	.	GT	./.
chr1	115537628	.	G	.	.	LowGQX	END=115537641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115537642	.	T	.	.	LowGQX	.	GT	./.
chr1	115575933	.	G	.	.	PASS	END=115575975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	115575976	.	G	.	.	PASS	END=115575990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	115575991	.	C	.	.	PASS	END=115576022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	115576023	.	A	G	2637.81	PASS	DP=99;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=15.1507;MQ=60;MQ0=0;QD=26.64;SB=-1536.17	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,99:99:99:2671,205,0:60:99:1.000
chr1	115576024	.	C	.	.	PASS	END=115576062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	115576063	.	A	.	.	PASS	END=115576131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	115576132	.	A	.	.	PASS	END=115576196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	115576543	.	T	.	.	PASS	END=115576562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	115576563	.	C	.	.	PASS	END=115576604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	115576605	.	C	.	.	PASS	END=115576620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	115576621	.	A	.	.	PASS	END=115576631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	115576632	.	G	.	.	PASS	END=115576648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	115576649	.	C	.	.	PASS	END=115576672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	115576673	.	C	.	.	PASS	END=115576771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	115576772	.	A	.	.	PASS	END=115576790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	115576791	.	C	.	.	PASS	END=115576813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	115576814	.	C	.	.	PASS	END=115576859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	115576860	.	T	.	.	PASS	END=115576899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	115593039	.	A	.	.	LowGQX	END=115593152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115593153	.	C	.	.	LowGQX	END=115593193	GT	./.
chr1	115595938	.	T	.	.	LowGQX	END=115596091	GT	./.
chr1	115600144	.	T	.	.	LowGQX	END=115600243	GT	./.
chr1	115601452	.	C	.	.	LowGQX	END=115601505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115601506	.	T	.	.	LowGQX	END=115601604	GT	./.
chr1	115603073	.	A	.	.	LowGQX	END=115603172	GT	./.
chr1	115604754	.	A	.	.	LowGQX	END=115604768	GT	./.
chr1	115604769	.	C	.	.	LowGQX	END=115604810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115604811	.	A	.	.	LowGQX	.	GT	./.
chr1	115604812	.	C	.	.	LowGQX	END=115604837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	115604838	.	A	.	.	LowGQX	.	GT	./.
chr1	115604839	.	C	.	.	LowGQX	END=115604855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	115615524	.	A	.	.	LowGQX	.	GT	./.
chr1	115615525	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115615526	.	C	.	.	LowGQX	END=115615527	GT	./.
chr1	115615528	.	A	.	.	LowGQX	END=115615531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115615532	.	A	.	.	LowGQX	END=115615533	GT	./.
chr1	115615534	.	A	.	.	LowGQX	END=115615540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115615541	.	C	.	.	LowGQX	.	GT	./.
chr1	115615542	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115615543	.	G	.	.	LowGQX	.	GT	./.
chr1	115615544	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115615545	.	G	.	.	LowGQX	END=115615546	GT	./.
chr1	115615547	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115615548	.	C	.	.	LowGQX	.	GT	./.
chr1	115615549	.	T	.	.	LowGQX	END=115615550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115615551	.	G	.	.	LowGQX	.	GT	./.
chr1	115615552	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	115615553	.	C	.	.	LowGQX	.	GT	./.
chr1	115615554	.	C	.	.	LowGQX	END=115615582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	115615583	.	C	.	.	LowGQX	.	GT	./.
chr1	115615584	.	G	.	.	LowGQX	END=115615587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	115615588	.	C	.	.	LowGQX	.	GT	./.
chr1	115615589	.	G	.	.	LowGQX	END=115615597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	115615598	.	G	.	.	LowGQX	.	GT	./.
chr1	115615599	.	T	.	.	LowGQX	END=115615610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	115615611	.	G	.	.	LowGQX	.	GT	./.
chr1	115615612	.	A	.	.	LowGQX	END=115615616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	115615617	.	C	.	.	LowGQX	.	GT	./.
chr1	115615618	.	G	.	.	LowGQX	END=115615619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	115615620	.	T	.	.	LowGQX	.	GT	./.
chr1	115615621	.	C	.	.	LowGQX	END=115615627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115615628	.	G	.	.	LowGQX	END=115615629	GT	./.
chr1	115615630	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	115631970	.	G	.	.	LowGQX	END=115632069	GT	./.
chr1	115828640	.	A	.	.	LowGQX	END=115828643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	115828644	.	G	.	.	LowGQX	END=115828653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	115828654	.	G	.	.	PASS	END=115828662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	115828663	.	G	.	.	LowGQX	END=115828664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	115828665	.	G	.	.	PASS	END=115828674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	115828675	.	G	.	.	PASS	END=115828688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	115828689	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:3:60
chr1	115828690	.	G	.	.	PASS	END=115828696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	115828697	.	T	.	.	PASS	END=115828699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	115828700	.	T	.	.	PASS	END=115828703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	115828704	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:48:60
chr1	115828705	.	C	.	.	PASS	END=115828709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	115828710	.	T	.	.	PASS	END=115828711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	115828712	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:39:60
chr1	115828713	.	C	.	.	PASS	END=115828722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	115828723	.	C	.	.	PASS	END=115828746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	115828747	.	G	.	.	PASS	END=115828774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	115828775	.	A	.	.	PASS	END=115828791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:93:60
chr1	115828792	.	T	.	.	PASS	END=115828814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	115828815	.	C	.	.	PASS	END=115828848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	115828849	.	G	.	.	PASS	END=115828962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	115828963	.	T	.	.	PASS	END=115829119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	115829120	.	G	.	.	PASS	END=115829181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	115829182	.	T	.	.	PASS	END=115829280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	115829281	.	T	.	.	PASS	END=115829312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	115829313	.	G	A	1999.44	PASS	BaseQRankSum=3.122;DP=190;Dels=0.00;FS=1.873;HRun=0;HaplotypeScore=7.6808;MQ=60;MQ0=0;MQRankSum=0.617;QD=10.52;ReadPosRankSum=-0.768;SB=-1223.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:100,90:190:99:2029,0,2551:60:99:0.474
chr1	115829314	.	C	.	.	PASS	END=115829415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	115829416	.	T	.	.	PASS	END=115829462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	115829463	.	A	.	.	PASS	END=115829467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	116193984	.	C	.	.	PASS	END=116194011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	116194012	.	T	.	.	PASS	END=116194031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	116194032	.	G	.	.	PASS	END=116194112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	116194113	.	A	.	.	PASS	END=116194147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	116194148	.	C	.	.	PASS	END=116194156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	116202211	.	A	.	.	PASS	END=116202266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:60
chr1	116202267	.	G	.	.	PASS	END=116202320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	116202321	.	A	.	.	PASS	END=116202356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	116202357	.	T	.	.	PASS	END=116202381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	116202382	.	A	.	.	PASS	END=116202405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	116202406	.	A	.	.	PASS	END=116202408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	116202409	.	T	.	.	PASS	END=116202411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chr1	116202412	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chr1	116202413	.	C	.	.	PASS	END=116202419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	116202420	.	C	.	.	PASS	END=116202430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	116202431	.	T	.	.	PASS	END=116202434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	116202435	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	116202436	.	C	.	.	PASS	END=116202443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	116202444	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:1:60
chr1	116202445	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	116206231	.	C	.	.	PASS	END=116206246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	116206247	.	G	.	.	PASS	END=116206280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	116206281	.	G	.	.	PASS	END=116206311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:80:60
chr1	116206312	.	A	.	.	PASS	END=116206333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:81:60
chr1	116206334	.	G	.	.	PASS	END=116206371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	116206372	.	A	.	.	PASS	END=116206391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	116206392	.	G	.	.	PASS	END=116206499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	116206500	.	G	.	.	PASS	END=116206589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	116206590	.	T	.	.	PASS	END=116206715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr1	116206716	.	C	.	.	PASS	END=116206743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	116206744	.	G	.	.	PASS	END=116206760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	116206761	.	T	.	.	PASS	END=116206783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	116206784	.	T	.	.	PASS	END=116206816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	116206817	.	A	.	.	PASS	END=116206837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	116206838	.	T	.	.	PASS	END=116206852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	116206853	.	A	.	.	PASS	END=116206874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	116206875	.	C	.	.	PASS	END=116206892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	116206893	.	A	.	.	PASS	END=116206900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	116206901	.	C	.	.	PASS	END=116206912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	116206913	.	A	.	.	PASS	END=116206919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	116206920	.	A	.	.	PASS	END=116206922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	116206923	.	G	.	.	PASS	END=116206927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	116206928	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr1	116206929	.	G	.	.	PASS	END=116206939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	116206940	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:51:60
chr1	116224934	.	C	.	.	PASS	END=116224954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	116224955	.	T	.	.	PASS	END=116224958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	116224959	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:63:60
chr1	116224960	.	A	.	.	PASS	END=116224998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	116224999	.	C	.	.	PASS	END=116225061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	116225062	.	C	.	.	PASS	END=116225108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	116225109	.	A	.	.	PASS	END=116225123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	116225124	.	T	.	.	PASS	END=116225132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	116225133	.	A	.	.	PASS	END=116225147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	116225148	.	C	.	.	PASS	END=116225153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	116225154	.	G	.	.	PASS	END=116225158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	116225159	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	116225160	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	116225161	.	A	.	.	LowGQX	END=116225162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	116225163	.	T	.	.	PASS	END=116225164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	116225165	.	G	.	.	LowGQX	END=116225166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	116225167	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	116225168	.	T	.	.	LowGQX	END=116225169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	116226514	.	T	.	.	PASS	END=116226555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:90:60
chr1	116226556	.	T	.	.	PASS	END=116226589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	116226590	.	G	.	.	PASS	END=116226711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	116226712	.	T	.	.	PASS	END=116226730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	116226731	.	C	.	.	PASS	END=116226748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	116227863	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:45:60
chr1	116227864	.	A	.	.	PASS	END=116227894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	116227895	.	G	.	.	PASS	END=116227905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	116227906	.	C	.	.	PASS	END=116227936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	116227937	.	C	.	.	PASS	END=116227961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	116227962	.	G	.	.	PASS	END=116227999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	116228000	.	A	.	.	PASS	END=116228096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	116228097	.	G	.	.	PASS	END=116228112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	116228113	.	C	.	.	PASS	END=116228149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	116228150	.	T	.	.	PASS	END=116228164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	116228165	.	G	.	.	PASS	END=116228173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	116228174	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:51:60
chr1	116228175	.	A	.	.	PASS	END=116228185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	116228186	.	G	.	.	PASS	END=116228195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	116228196	.	T	.	.	PASS	END=116228199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	116233689	.	C	.	.	LowGQX	END=116233705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	116233706	.	T	.	.	PASS	END=116233707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	116233708	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:21:60
chr1	116233709	.	T	.	.	PASS	END=116233711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	116233712	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	116233713	.	C	.	.	PASS	END=116233718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	116233719	.	G	.	.	LowGQX	END=116233732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	116233733	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	116233734	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	116233735	.	T	.	.	LowGQX	END=116233737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	116233738	.	A	.	.	PASS	END=116233739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	116233740	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	116233741	.	C	.	.	PASS	END=116233743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	116233744	.	T	.	.	PASS	END=116233749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	116233750	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:29:60
chr1	116233751	.	A	.	.	PASS	END=116233761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	116233762	.	G	.	.	PASS	END=116233777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	116233778	.	G	.	.	PASS	END=116233787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	116233788	.	A	.	.	PASS	END=116233800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:92:60
chr1	116233801	.	T	.	.	PASS	END=116233810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	116233811	.	G	.	.	PASS	END=116233862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	116233863	.	G	.	.	PASS	END=116233947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	116233948	.	A	.	.	PASS	END=116233957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	116233958	.	T	.	.	PASS	END=116234013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	116234014	.	G	.	.	PASS	END=116234051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	116243801	.	T	.	.	PASS	END=116243806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	116243807	.	C	.	.	PASS	END=116243829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	116243830	.	T	.	.	PASS	END=116243860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	116243861	.	G	.	.	PASS	END=116243867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	116243868	.	A	G	763.42	PASS	BaseQRankSum=-0.923;DP=70;Dels=0.00;FS=2.641;HRun=0;HaplotypeScore=12.3099;MQ=60;MQ0=0;MQRankSum=-1.912;QD=10.91;ReadPosRankSum=-0.863;SB=-126.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,31:70:99:793,0,896:60:99:0.449
chr1	116243869	.	T	.	.	PASS	END=116243889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	116243890	.	T	.	.	PASS	END=116243934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	116243935	.	T	.	.	PASS	END=116244039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	116244040	.	C	.	.	PASS	END=116244083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	116244084	.	C	.	.	PASS	END=116244097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	116244098	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:99:60
chr1	116245491	.	A	.	.	PASS	END=116245514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	116245515	.	G	.	.	PASS	END=116245517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	116245518	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:42:60
chr1	116245519	.	A	.	.	PASS	END=116245520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	116245521	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:36:60
chr1	116245522	.	C	.	.	PASS	END=116245529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	116245530	.	G	.	.	PASS	END=116245532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	116245533	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:58:60
chr1	116245534	.	A	.	.	PASS	END=116245557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:80:60
chr1	116245558	.	A	.	.	PASS	END=116245657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	116245658	.	C	.	.	PASS	END=116245667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:93:60
chr1	116247762	.	C	.	.	PASS	END=116247784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	116247785	.	G	.	.	PASS	END=116247822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	116247823	.	T	.	.	PASS	END=116247869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	116247870	.	G	.	.	PASS	END=116247951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	116247952	.	A	.	.	PASS	END=116247964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	116260410	.	A	.	.	PASS	END=116260431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	116260432	.	T	.	.	PASS	END=116260472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	116260473	.	T	.	.	PASS	END=116260566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	116268062	.	T	.	.	PASS	END=116268085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	116268086	.	A	.	.	PASS	END=116268145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	116268146	.	C	.	.	PASS	END=116268170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:59
chr1	116268171	.	G	.	.	PASS	END=116268177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:59
chr1	116268178	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:80:74:59
chr1	116268179	.	A	.	.	PASS	END=116268199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:59
chr1	116268200	.	A	.	.	PASS	END=116268201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:59
chr1	116268202	.	G	.	.	PASS	END=116268225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:59
chr1	116269562	.	C	.	.	PASS	END=116269568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:60
chr1	116269569	.	C	.	.	PASS	END=116269583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	116269584	.	C	.	.	PASS	END=116269587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	116269588	.	A	.	.	PASS	END=116269589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	116269590	.	C	.	.	PASS	END=116269600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	116269601	.	C	.	.	PASS	END=116269611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	116269612	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:75:60
chr1	116269613	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:27:60
chr1	116269614	.	T	.	.	PASS	END=116269634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	116269635	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:42:60
chr1	116269636	.	C	.	.	PASS	END=116269641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	116269642	.	C	.	.	PASS	END=116269647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	116269648	.	T	.	.	PASS	END=116269662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	116269663	.	G	.	.	PASS	END=116269680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	116269681	.	C	.	.	PASS	END=116269782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	116269783	.	T	.	.	PASS	END=116269794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	116275471	.	A	.	.	PASS	END=116275524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	116275525	.	T	.	.	PASS	END=116275571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	116275572	.	C	.	.	PASS	END=116275621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	116275622	.	A	.	.	PASS	END=116275646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	116280794	.	G	.	.	PASS	END=116280819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	116280820	.	C	.	.	PASS	END=116280946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	116280947	.	C	.	.	PASS	END=116280982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	116280983	.	A	.	.	PASS	END=116280992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	116280993	.	A	.	.	PASS	END=116281007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	116283298	.	A	.	.	PASS	END=116283324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	116283325	.	G	.	.	PASS	END=116283342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	116283343	.	A	G	2024.60	PASS	BaseQRankSum=1.579;DP=68;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-1.477;QD=29.77;ReadPosRankSum=-1.121;SB=-865.62	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,67:68:99:2058,159,0:60:99:0.985
chr1	116283344	.	C	.	.	PASS	END=116283369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	116283370	.	G	.	.	PASS	END=116283400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	116283401	.	A	.	.	PASS	END=116283482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	116283483	.	A	.	.	PASS	END=116283496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	116283497	.	A	.	.	PASS	END=116283500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	116287398	.	A	.	.	PASS	END=116287418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	116287419	.	C	.	.	PASS	END=116287528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:88:60
chr1	116287529	.	A	.	.	PASS	END=116287569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	116287570	.	C	.	.	PASS	END=116287578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	116287579	.	G	.	.	PASS	END=116287582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	116287583	.	G	.	.	PASS	END=116287584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	116310878	.	C	.	.	PASS	END=116310900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	116310901	.	G	.	.	PASS	END=116310949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	116310950	.	T	.	.	PASS	END=116310964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	116310965	.	C	.	.	PASS	END=116310986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	116310987	.	G	.	.	PASS	END=116311118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	116311119	.	G	.	.	PASS	END=116311137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	116311138	.	C	.	.	PASS	END=116311197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	116311198	.	T	C	3145.12	SB	BaseQRankSum=0.540;DP=93;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=5.8822;MQ=60;MQ0=0;MQRankSum=0.838;QD=33.82;ReadPosRankSum=-1.211;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,92:93:99:3178,219,0:60:99:0.989
chr1	116311199	.	G	.	.	PASS	END=116311209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	116311210	.	A	.	.	PASS	END=116311213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	116380514	.	C	.	.	LowGQX	END=116381063	GT	./.
chr1	116519182	.	C	.	.	LowGQX	END=116519397	GT	./.
chr1	116534651	.	G	.	.	LowGQX	END=116534864	GT	./.
chr1	116562202	.	G	.	.	LowGQX	.	GT	./.
chr1	116562203	.	T	.	.	LowGQX	END=116562214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116562215	.	G	.	.	LowGQX	.	GT	./.
chr1	116562216	.	C	.	.	LowGQX	END=116562231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116562232	.	A	.	.	LowGQX	END=116562335	GT	./.
chr1	116563341	.	G	.	.	LowGQX	END=116563506	GT	./.
chr1	116569513	.	G	.	.	LowGQX	END=116569643	GT	./.
chr1	116569904	.	A	.	.	LowGQX	END=116570003	GT	./.
chr1	116573986	.	G	.	.	LowGQX	END=116574202	GT	./.
chr1	116577807	.	G	.	.	LowGQX	END=116577948	GT	./.
chr1	116579917	.	T	.	.	LowGQX	END=116580016	GT	./.
chr1	116605382	.	G	.	.	LowGQX	END=116605503	GT	./.
chr1	116607043	.	C	.	.	LowGQX	END=116607142	GT	./.
chr1	116609140	.	G	.	.	LowGQX	END=116609158	GT	./.
chr1	116609159	.	T	.	.	LowGQX	END=116609160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609161	.	A	.	.	LowGQX	END=116609163	GT	./.
chr1	116609164	.	A	.	.	LowGQX	END=116609168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609169	.	T	.	.	LowGQX	.	GT	./.
chr1	116609170	.	T	.	.	LowGQX	END=116609172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609173	.	C	.	.	LowGQX	END=116609174	GT	./.
chr1	116609175	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609176	.	C	.	.	LowGQX	END=116609178	GT	./.
chr1	116609179	.	A	.	.	LowGQX	END=116609181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609182	.	C	.	.	LowGQX	.	GT	./.
chr1	116609183	.	A	.	.	LowGQX	END=116609185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609186	.	G	.	.	LowGQX	.	GT	./.
chr1	116609187	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609188	.	T	.	.	LowGQX	.	GT	./.
chr1	116609189	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609190	.	T	.	.	LowGQX	.	GT	./.
chr1	116609191	.	G	.	.	LowGQX	END=116609192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609193	.	C	.	.	LowGQX	END=116609194	GT	./.
chr1	116609195	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609196	.	C	.	.	LowGQX	END=116609199	GT	./.
chr1	116609200	.	C	.	.	LowGQX	END=116609203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609204	.	C	.	.	LowGQX	.	GT	./.
chr1	116609205	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609206	.	G	.	.	LowGQX	.	GT	./.
chr1	116609207	.	A	.	.	LowGQX	END=116609210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609211	.	T	.	.	LowGQX	END=116609212	GT	./.
chr1	116609213	.	T	.	.	LowGQX	END=116609215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609216	.	T	.	.	LowGQX	END=116609217	GT	./.
chr1	116609218	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609219	.	C	.	.	LowGQX	.	GT	./.
chr1	116609220	.	C	.	.	LowGQX	END=116609224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609225	.	A	.	.	LowGQX	.	GT	./.
chr1	116609226	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116609227	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	116609228	.	C	.	.	LowGQX	.	GT	./.
chr1	116609229	.	T	.	.	LowGQX	END=116609232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116609233	.	C	.	.	LowGQX	.	GT	./.
chr1	116609234	.	A	.	.	LowGQX	END=116609236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116609237	.	C	.	.	LowGQX	.	GT	./.
chr1	116609238	.	C	.	.	LowGQX	END=116609241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116609242	.	G	.	.	LowGQX	.	GT	./.
chr1	116609243	.	C	.	.	LowGQX	END=116609247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116609248	.	A	.	.	LowGQX	.	GT	./.
chr1	116609249	.	A	.	.	LowGQX	END=116609256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116609257	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	116609258	.	G	.	.	LowGQX	END=116609263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116609264	.	C	.	.	LowGQX	.	GT	./.
chr1	116609265	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116609266	.	G	.	.	LowGQX	.	GT	./.
chr1	116609267	.	G	.	.	LowGQX	END=116609268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116609269	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	116609270	.	T	.	.	LowGQX	END=116609274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116609275	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	116609276	.	T	.	.	LowGQX	END=116609278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116609279	.	C	.	.	LowGQX	.	GT	./.
chr1	116609280	.	G	.	.	LowGQX	END=116609287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116609288	.	G	.	.	LowGQX	.	GT	./.
chr1	116609289	.	G	.	.	LowGQX	END=116609290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116609291	.	G	.	5.68	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr1	116609292	.	A	.	.	LowGQX	END=116609308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116609309	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	116609310	.	A	.	.	LowGQX	END=116609312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609313	.	C	.	.	LowGQX	.	GT	./.
chr1	116609314	.	T	.	.	LowGQX	END=116609316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609317	.	G	.	.	LowGQX	END=116609318	GT	./.
chr1	116609319	.	A	.	.	LowGQX	END=116609323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609324	.	C	.	.	LowGQX	END=116609325	GT	./.
chr1	116609326	.	A	.	.	LowGQX	END=116609327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609328	.	A	.	.	LowGQX	.	GT	./.
chr1	116609329	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609635	.	T	.	.	LowGQX	END=116609680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609681	.	A	.	.	LowGQX	.	GT	./.
chr1	116609682	.	G	.	.	LowGQX	END=116609686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609687	.	A	.	.	LowGQX	.	GT	./.
chr1	116609688	.	G	.	.	LowGQX	END=116609712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116609713	.	C	.	.	LowGQX	END=116609720	GT	./.
chr1	116609721	.	A	.	.	LowGQX	END=116609734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116655211	.	T	.	.	LowGQX	END=116655215	GT	./.
chr1	116655216	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116655217	.	T	.	.	LowGQX	.	GT	./.
chr1	116655218	.	G	.	.	LowGQX	END=116655231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116655232	.	A	.	.	LowGQX	.	GT	./.
chr1	116655233	.	A	.	.	LowGQX	END=116655253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116655254	.	G	.	.	LowGQX	.	GT	./.
chr1	116655255	.	G	.	.	LowGQX	END=116655266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116655267	.	G	.	.	LowGQX	.	GT	./.
chr1	116655268	.	A	.	.	LowGQX	END=116655273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116655274	.	T	.	.	LowGQX	.	GT	./.
chr1	116655275	.	A	.	.	LowGQX	END=116655277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116655278	.	G	.	.	LowGQX	END=116655281	GT	./.
chr1	116655282	.	A	.	.	LowGQX	END=116655288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116655289	.	G	.	.	LowGQX	.	GT	./.
chr1	116655290	.	G	.	.	LowGQX	END=116655292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116655293	.	A	.	.	LowGQX	.	GT	./.
chr1	116655294	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116655295	.	A	.	.	LowGQX	.	GT	./.
chr1	116655296	.	C	.	.	LowGQX	END=116655300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116655301	.	T	.	.	LowGQX	.	GT	./.
chr1	116655302	.	C	.	.	LowGQX	END=116655306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116655307	.	C	.	.	LowGQX	.	GT	./.
chr1	116655308	.	C	.	.	LowGQX	END=116655310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116663551	.	A	.	.	LowGQX	END=116663695	GT	./.
chr1	116666685	.	A	.	.	LowGQX	END=116666708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116666709	.	T	.	.	LowGQX	.	GT	./.
chr1	116666710	.	C	.	.	LowGQX	END=116666980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116670085	.	A	.	.	LowGQX	END=116670096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116670097	.	C	.	.	LowGQX	.	GT	./.
chr1	116670098	.	C	.	.	LowGQX	END=116670107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116670108	.	A	.	.	LowGQX	.	GT	./.
chr1	116670109	.	C	.	.	LowGQX	END=116670115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116670116	.	G	.	.	LowGQX	.	GT	./.
chr1	116670117	.	C	.	.	LowGQX	END=116670135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116670136	.	A	.	.	LowGQX	END=116670137	GT	./.
chr1	116670138	.	C	.	.	LowGQX	END=116670140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116670141	.	C	.	.	LowGQX	END=116670230	GT	./.
chr1	116670231	.	G	.	.	LowGQX	END=116670238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116670239	.	T	.	.	LowGQX	.	GT	./.
chr1	116670240	.	C	.	.	LowGQX	END=116670244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116670245	.	G	.	.	LowGQX	END=116670246	GT	./.
chr1	116670247	.	G	.	.	LowGQX	END=116670255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116670256	.	G	.	.	LowGQX	.	GT	./.
chr1	116670257	.	T	.	.	LowGQX	END=116670260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116670261	.	T	.	.	LowGQX	.	GT	./.
chr1	116670262	.	C	.	.	LowGQX	END=116670265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116670266	.	G	.	.	LowGQX	.	GT	./.
chr1	116670267	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116670764	.	A	.	.	LowGQX	END=116670828	GT	./.
chr1	116670829	.	G	.	.	LowGQX	END=116670848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116670849	.	G	.	.	LowGQX	.	GT	./.
chr1	116670850	.	C	.	.	LowGQX	END=116670864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116670865	.	G	.	.	LowGQX	END=116670866	GT	./.
chr1	116670867	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116670868	.	T	.	.	LowGQX	END=116670870	GT	./.
chr1	116670871	.	C	.	.	LowGQX	END=116670872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116670873	.	T	.	.	LowGQX	.	GT	./.
chr1	116670874	.	A	.	.	LowGQX	END=116670879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116670880	.	T	.	.	LowGQX	.	GT	./.
chr1	116670881	.	G	.	.	LowGQX	END=116670889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116670890	.	T	.	.	LowGQX	.	GT	./.
chr1	116670891	.	C	.	.	LowGQX	END=116670893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116670894	.	G	.	.	LowGQX	.	GT	./.
chr1	116670895	.	A	.	.	LowGQX	END=116670896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116670897	.	G	.	.	LowGQX	.	GT	./.
chr1	116670898	.	C	.	.	LowGQX	END=116670922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116670923	.	C	.	.	LowGQX	.	GT	./.
chr1	116670924	.	A	.	.	LowGQX	END=116670926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116670927	.	G	.	.	LowGQX	.	GT	./.
chr1	116670928	.	A	.	.	LowGQX	END=116670930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116670931	.	A	.	.	LowGQX	.	GT	./.
chr1	116670932	.	G	.	.	LowGQX	END=116670947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116670948	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	116670949	.	C	.	.	LowGQX	END=116670962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116675751	.	A	.	.	LowGQX	END=116675988	GT	./.
chr1	116916030	.	A	.	.	LowGQX	END=116916189	GT	./.
chr1	116916808	.	T	.	.	LowGQX	END=116916907	GT	./.
chr1	116925899	.	C	.	.	LowGQX	END=116925998	GT	./.
chr1	116926633	.	C	.	.	LowGQX	END=116926748	GT	./.
chr1	116927393	.	G	.	.	LowGQX	END=116927599	GT	./.
chr1	116929908	.	A	.	.	LowGQX	END=116930115	GT	./.
chr1	116930751	.	A	.	.	LowGQX	END=116930910	GT	./.
chr1	116931258	.	A	.	.	LowGQX	END=116931263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116931264	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	116931265	.	C	.	.	LowGQX	END=116931342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116931343	.	A	.	.	LowGQX	END=116931396	GT	./.
chr1	116931522	.	A	.	.	LowGQX	END=116931643	GT	./.
chr1	116932059	.	A	.	.	LowGQX	END=116932060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932061	.	G	.	.	LowGQX	.	GT	./.
chr1	116932062	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932063	.	A	.	.	LowGQX	END=116932064	GT	./.
chr1	116932065	.	C	.	.	LowGQX	END=116932066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932067	.	C	.	.	LowGQX	.	GT	./.
chr1	116932068	.	A	.	.	LowGQX	END=116932069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932070	.	G	.	.	LowGQX	END=116932071	GT	./.
chr1	116932072	.	G	.	.	LowGQX	END=116932079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932080	.	T	.	.	LowGQX	.	GT	./.
chr1	116932081	.	G	.	.	LowGQX	END=116932095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932096	.	C	.	.	LowGQX	.	GT	./.
chr1	116932097	.	G	.	.	LowGQX	END=116932099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932100	.	C	.	.	LowGQX	.	GT	./.
chr1	116932101	.	T	.	.	LowGQX	END=116932113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932114	.	A	.	.	LowGQX	.	GT	./.
chr1	116932115	.	T	.	.	LowGQX	END=116932126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932127	.	C	.	.	LowGQX	.	GT	./.
chr1	116932128	.	T	.	.	LowGQX	END=116932131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932132	.	G	.	.	LowGQX	.	GT	./.
chr1	116932133	.	G	.	.	LowGQX	END=116932136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932137	.	G	.	.	LowGQX	.	GT	./.
chr1	116932138	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932139	.	A	.	.	LowGQX	END=116932140	GT	./.
chr1	116932141	.	G	.	.	LowGQX	END=116932143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932144	.	G	.	.	LowGQX	.	GT	./.
chr1	116932145	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932146	.	C	.	.	LowGQX	END=116932147	GT	./.
chr1	116932148	.	A	.	.	LowGQX	END=116932150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932151	.	C	.	.	LowGQX	END=116932152	GT	./.
chr1	116932153	.	C	.	.	LowGQX	END=116932154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932155	.	C	.	.	LowGQX	.	GT	./.
chr1	116932156	.	A	.	.	LowGQX	END=116932159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932160	.	C	.	.	LowGQX	.	GT	./.
chr1	116932161	.	T	.	.	LowGQX	END=116932174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932175	.	A	.	.	LowGQX	.	GT	./.
chr1	116932176	.	T	.	.	LowGQX	END=116932179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932180	.	A	.	.	LowGQX	END=116932181	GT	./.
chr1	116932182	.	C	.	.	LowGQX	END=116932190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932191	.	C	.	.	LowGQX	.	GT	./.
chr1	116932192	.	A	.	.	LowGQX	END=116932212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932213	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	116932214	.	G	.	.	LowGQX	END=116932256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116932257	.	G	T	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	116932258	.	C	.	.	LowGQX	END=116932303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116932304	.	C	.	.	LowGQX	.	GT	./.
chr1	116932305	.	G	.	.	LowGQX	END=116932321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116932322	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	116932323	.	T	.	.	LowGQX	END=116932331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116932833	.	A	.	.	LowGQX	END=116932852	GT	./.
chr1	116932853	.	G	.	.	LowGQX	END=116932859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932860	.	G	.	.	LowGQX	.	GT	./.
chr1	116932861	.	C	.	.	LowGQX	END=116932864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932865	.	G	.	.	LowGQX	.	GT	./.
chr1	116932866	.	C	.	.	LowGQX	END=116932877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932878	.	G	.	.	LowGQX	.	GT	./.
chr1	116932879	.	C	.	.	LowGQX	END=116932891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932892	.	T	.	.	LowGQX	END=116932893	GT	./.
chr1	116932894	.	A	.	.	LowGQX	END=116932895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932896	.	A	.	.	LowGQX	.	GT	./.
chr1	116932897	.	A	.	.	LowGQX	END=116932913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116932914	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	116932915	.	G	.	.	LowGQX	END=116932976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116932977	.	C	.	.	LowGQX	.	GT	./.
chr1	116932978	.	C	.	.	LowGQX	END=116932980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116932981	.	C	.	.	LowGQX	.	GT	./.
chr1	116932982	.	A	.	.	LowGQX	END=116933002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116933003	.	C	.	.	LowGQX	END=116933005	GT	./.
chr1	116933006	.	G	.	.	LowGQX	END=116933009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116933010	.	C	.	.	LowGQX	.	GT	./.
chr1	116933011	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116933012	.	G	.	.	LowGQX	.	GT	./.
chr1	116933013	.	A	.	.	LowGQX	END=116933018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116933019	.	C	.	.	LowGQX	END=116933020	GT	./.
chr1	116933021	.	G	.	.	LowGQX	END=116933022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116933023	.	G	.	.	LowGQX	.	GT	./.
chr1	116933024	.	A	.	.	LowGQX	END=116933030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116933031	.	G	.	.	LowGQX	.	GT	./.
chr1	116933032	.	T	.	.	LowGQX	END=116933033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116933034	.	G	.	.	LowGQX	.	GT	./.
chr1	116933035	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116933402	.	A	.	.	LowGQX	END=116933482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116933483	.	G	.	.	LowGQX	.	GT	./.
chr1	116933484	.	G	.	.	LowGQX	END=116933485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116933486	.	T	.	.	LowGQX	END=116933515	GT	./.
chr1	116935474	.	A	.	.	LowGQX	END=116935517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116935518	.	T	.	.	LowGQX	.	GT	./.
chr1	116935519	.	G	.	.	LowGQX	END=116935612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116936151	.	A	.	.	LowGQX	END=116936347	GT	./.
chr1	116937730	.	A	.	.	LowGQX	END=116937909	GT	./.
chr1	116939187	.	G	.	.	LowGQX	END=116939358	GT	./.
chr1	116940508	.	A	.	.	LowGQX	END=116940648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116940649	.	T	.	.	LowGQX	END=116940662	GT	./.
chr1	116941241	.	A	.	.	LowGQX	END=116941413	GT	./.
chr1	116941550	.	A	.	.	LowGQX	END=116941658	GT	./.
chr1	116941659	.	C	.	.	LowGQX	END=116941660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116941661	.	A	.	.	LowGQX	.	GT	./.
chr1	116941662	.	C	.	.	LowGQX	END=116941673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116941674	.	A	.	.	LowGQX	.	GT	./.
chr1	116941675	.	C	.	.	LowGQX	END=116941688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116941689	.	G	.	.	LowGQX	.	GT	./.
chr1	116941690	.	A	.	.	LowGQX	END=116941708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116942040	.	A	.	.	LowGQX	END=116942051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	116942052	.	T	.	.	LowGQX	END=116942095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116942096	.	C	.	.	LowGQX	END=116942167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	116943481	.	A	.	.	LowGQX	END=116943630	GT	./.
chr1	116943750	.	A	.	.	LowGQX	.	GT	./.
chr1	116943751	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116943752	.	A	.	.	LowGQX	.	GT	./.
chr1	116943753	.	C	.	.	LowGQX	END=116943754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116943755	.	T	.	.	LowGQX	.	GT	./.
chr1	116943756	.	A	.	.	LowGQX	END=116943764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116943765	.	G	.	.	LowGQX	.	GT	./.
chr1	116943766	.	G	.	.	LowGQX	END=116943800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116943801	.	T	.	.	LowGQX	.	GT	./.
chr1	116943802	.	C	.	.	LowGQX	END=116943803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116943804	.	T	.	.	LowGQX	.	GT	./.
chr1	116943805	.	C	.	.	LowGQX	END=116943815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116943816	.	T	.	.	LowGQX	.	GT	./.
chr1	116943817	.	G	.	.	LowGQX	END=116943831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116943832	.	C	.	.	LowGQX	.	GT	./.
chr1	116943833	.	T	.	.	LowGQX	END=116943875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116943876	.	G	.	.	LowGQX	.	GT	./.
chr1	116943877	.	G	.	.	LowGQX	END=116943884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116944174	.	A	.	.	LowGQX	END=116944279	GT	./.
chr1	116946502	.	C	.	.	LowGQX	END=116946601	GT	./.
chr1	116946943	.	T	.	.	LowGQX	END=116947102	GT	./.
chr1	116948224	.	C	.	.	LowGQX	END=116948281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	116948282	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	116948283	.	T	.	.	LowGQX	END=116948364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	116948365	.	C	.	.	LowGQX	END=116948512	GT	./.
chr1	116952718	.	T	.	.	LowGQX	END=116952817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117057390	.	T	.	.	PASS	END=117057489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	117061820	.	T	.	.	PASS	END=117061839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	117061840	.	G	.	.	PASS	END=117061956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	117061957	.	A	.	.	PASS	END=117061968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	117061969	.	A	.	.	PASS	END=117061972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	117064450	.	T	.	.	PASS	END=117064529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	117064530	.	T	.	.	PASS	END=117064563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	117064564	.	C	.	.	PASS	END=117064590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	117064591	.	T	.	.	PASS	END=117064608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	117078585	.	A	.	.	PASS	END=117078604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	117078605	.	T	.	.	PASS	END=117078708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	117078709	.	T	.	.	PASS	END=117078852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	117086931	.	A	.	.	PASS	END=117087037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	117087038	.	A	.	.	PASS	END=117087113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	117087114	.	A	.	.	PASS	END=117087188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	117087189	.	A	.	.	PASS	END=117087228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	117113450	.	G	.	.	PASS	END=117113453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:60
chr1	117113454	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:39:60
chr1	117113455	.	G	.	.	PASS	END=117113464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:66:60
chr1	117113465	.	C	.	.	PASS	END=117113469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:72:60
chr1	117113470	.	G	.	.	PASS	END=117113476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	117113477	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:60:60
chr1	117113478	.	C	.	.	PASS	END=117113515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	117113516	.	T	.	.	PASS	END=117113548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	117113549	.	C	.	.	PASS	END=117113588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	117113589	.	A	.	.	PASS	END=117113609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	117119932	.	G	.	.	LowGQX	END=117120186	GT	./.
chr1	117122012	.	A	.	.	LowGQX	END=117122228	GT	./.
chr1	117122229	.	G	.	.	LowGQX	END=117122288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117122289	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	117122290	.	C	.	.	LowGQX	END=117122317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117122318	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	117122319	.	T	.	.	LowGQX	END=117122346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117122347	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	117122348	.	T	.	.	LowGQX	END=117122350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117122351	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	117122352	.	C	.	.	LowGQX	END=117122356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117122357	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	117122358	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	117122359	.	C	.	.	LowGQX	END=117122365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117122366	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	117122367	.	C	.	.	LowGQX	END=117122391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117122392	.	A	.	.	LowGQX	END=117122501	GT	./.
chr1	117127163	.	C	.	.	LowGQX	END=117127199	GT	./.
chr1	117127200	.	G	.	.	LowGQX	END=117127228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127229	.	A	.	.	LowGQX	.	GT	./.
chr1	117127230	.	C	.	.	LowGQX	END=117127258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127259	.	A	.	.	LowGQX	.	GT	./.
chr1	117127260	.	C	.	.	LowGQX	END=117127283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127284	.	A	.	.	LowGQX	.	GT	./.
chr1	117127285	.	G	.	.	LowGQX	END=117127297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127298	.	A	.	.	LowGQX	.	GT	./.
chr1	117127299	.	G	.	.	LowGQX	END=117127347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127348	.	A	.	.	LowGQX	.	GT	./.
chr1	117127349	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127350	.	T	.	.	LowGQX	.	GT	./.
chr1	117127351	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127352	.	C	.	.	LowGQX	END=117127353	GT	./.
chr1	117127354	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127355	.	C	.	.	LowGQX	END=117127356	GT	./.
chr1	117127357	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127358	.	A	.	.	LowGQX	.	GT	./.
chr1	117127359	.	T	.	.	LowGQX	END=117127365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127366	.	T	.	.	LowGQX	.	GT	./.
chr1	117127367	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127368	.	T	.	.	LowGQX	.	GT	./.
chr1	117127369	.	A	.	.	LowGQX	END=117127371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127372	.	T	.	.	LowGQX	.	GT	./.
chr1	117127373	.	C	.	.	LowGQX	END=117127377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127378	.	T	.	.	LowGQX	.	GT	./.
chr1	117127379	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127380	.	T	.	.	LowGQX	.	GT	./.
chr1	117127381	.	C	.	.	LowGQX	END=117127382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127383	.	T	.	.	LowGQX	END=117127384	GT	./.
chr1	117127385	.	C	.	.	LowGQX	END=117127386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127387	.	C	.	.	LowGQX	.	GT	./.
chr1	117127388	.	A	.	.	LowGQX	END=117127392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127393	.	C	.	.	LowGQX	.	GT	./.
chr1	117127394	.	G	.	.	LowGQX	END=117127395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127396	.	T	.	.	LowGQX	.	GT	./.
chr1	117127397	.	C	.	.	LowGQX	END=117127402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127403	.	G	.	.	LowGQX	.	GT	./.
chr1	117127404	.	A	.	.	LowGQX	END=117127407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127408	.	G	.	.	LowGQX	.	GT	./.
chr1	117127409	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127410	.	C	.	.	LowGQX	.	GT	./.
chr1	117127411	.	G	.	.	LowGQX	END=117127412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127413	.	T	.	.	LowGQX	END=117127414	GT	./.
chr1	117127415	.	C	.	.	LowGQX	END=117127416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127417	.	C	.	.	LowGQX	.	GT	./.
chr1	117127418	.	G	.	.	LowGQX	END=117127475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127476	.	T	.	.	LowGQX	.	GT	./.
chr1	117127477	.	C	.	.	LowGQX	END=117127487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117127488	.	A	.	.	LowGQX	END=117127676	GT	./.
chr1	117131314	.	A	.	.	LowGQX	END=117131728	GT	./.
chr1	117142561	.	A	.	.	LowGQX	END=117142657	GT	./.
chr1	117142658	.	C	.	.	LowGQX	END=117142777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117142778	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	117142779	.	G	.	.	LowGQX	END=117142785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117142786	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	117142787	.	C	.	.	LowGQX	END=117142793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117142794	.	G	.	.	LowGQX	.	GT	./.
chr1	117142795	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117142796	.	G	.	.	LowGQX	END=117142969	GT	./.
chr1	117146244	.	A	.	.	LowGQX	END=117146457	GT	./.
chr1	117146458	.	G	.	.	LowGQX	END=117146459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146460	.	C	.	.	LowGQX	.	GT	./.
chr1	117146461	.	T	.	.	LowGQX	END=117146462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146463	.	C	.	.	LowGQX	.	GT	./.
chr1	117146464	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146465	.	C	.	.	LowGQX	END=117146467	GT	./.
chr1	117146468	.	T	.	.	LowGQX	END=117146470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146471	.	C	.	.	LowGQX	.	GT	./.
chr1	117146472	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146473	.	T	.	.	LowGQX	.	GT	./.
chr1	117146474	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146475	.	C	.	.	LowGQX	.	GT	./.
chr1	117146476	.	C	.	.	LowGQX	END=117146477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146478	.	G	.	.	LowGQX	.	GT	./.
chr1	117146479	.	T	.	.	LowGQX	END=117146501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146502	.	G	.	.	LowGQX	.	GT	./.
chr1	117146503	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146504	.	G	.	2.30	LowGQX	DP=1;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:27:0
chr1	117146505	.	G	.	.	LowGQX	END=117146507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146508	.	C	.	.	LowGQX	.	GT	./.
chr1	117146509	.	T	.	.	LowGQX	END=117146521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146522	.	G	.	.	LowGQX	.	GT	./.
chr1	117146523	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146524	.	T	.	.	LowGQX	.	GT	./.
chr1	117146525	.	G	.	.	LowGQX	END=117146526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146527	.	C	.	.	LowGQX	.	GT	./.
chr1	117146528	.	A	.	.	LowGQX	END=117146533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146534	.	C	.	.	LowGQX	.	GT	./.
chr1	117146535	.	A	.	.	LowGQX	END=117146536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146537	.	A	.	.	LowGQX	.	GT	./.
chr1	117146538	.	G	.	.	LowGQX	END=117146562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146563	.	G	A	14.86	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=27;MQ0=0;QD=7.43;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:27:3:1.000
chr1	117146564	.	T	.	.	LowGQX	END=117146570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:27
chr1	117146571	.	A	G	14.86	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=27;MQ0=0;QD=7.43;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:27:3:1.000
chr1	117146572	.	C	.	.	LowGQX	END=117146583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:27
chr1	117146584	.	C	A	14.86	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=27;MQ0=0;QD=7.43;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:27:3:1.000
chr1	117146585	.	G	.	2.30	LowGQX	DP=2;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:2:0:27:0
chr1	117146586	.	C	.	.	LowGQX	END=117146589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:27
chr1	117146590	.	T	.	.	LowGQX	.	GT	./.
chr1	117146591	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:27
chr1	117146592	.	C	.	2.30	LowGQX	DP=2;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:2:0:27:0
chr1	117146593	.	T	.	.	LowGQX	END=117146608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146609	.	C	.	.	LowGQX	.	GT	./.
chr1	117146610	.	G	.	.	LowGQX	END=117146617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146618	.	T	.	.	LowGQX	.	GT	./.
chr1	117146619	.	G	.	.	LowGQX	END=117146628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146629	.	T	.	2.30	LowGQX	DP=1;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:27:0
chr1	117146630	.	C	.	.	LowGQX	END=117146635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146636	.	A	.	.	LowGQX	.	GT	./.
chr1	117146637	.	G	.	.	LowGQX	END=117146648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	117146649	.	T	.	.	LowGQX	.	GT	./.
chr1	117149042	.	A	.	.	LowGQX	END=117149193	GT	./.
chr1	117150562	.	A	.	.	LowGQX	END=117150608	GT	./.
chr1	117150609	.	C	.	.	LowGQX	END=117150626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	117150627	.	C	.	.	LowGQX	.	GT	./.
chr1	117150628	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:47
chr1	117150629	.	G	.	.	LowGQX	.	GT	./.
chr1	117150630	.	T	.	.	LowGQX	END=117150645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	117150646	.	C	.	.	LowGQX	.	GT	./.
chr1	117150647	.	T	.	.	LowGQX	END=117150735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	117150736	.	C	.	33	LowGQX	DP=2;MQ=49;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:49:3
chr1	117150737	.	T	.	.	LowGQX	END=117150740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:49
chr1	117150741	.	G	.	.	LowGQX	.	GT	./.
chr1	117150742	.	C	.	.	LowGQX	END=117150758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:49
chr1	117150759	.	G	.	.	LowGQX	.	GT	./.
chr1	117150760	.	G	.	.	LowGQX	END=117150782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:50
chr1	117150783	.	C	.	.	LowGQX	.	GT	./.
chr1	117150784	.	A	.	.	LowGQX	END=117150799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:50
chr1	117150800	.	C	.	.	LowGQX	END=117150822	GT	./.
chr1	117150823	.	G	.	.	LowGQX	END=117150861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	117150862	.	A	.	.	LowGQX	.	GT	./.
chr1	117150863	.	T	.	.	LowGQX	END=117150887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	117150888	.	A	.	.	LowGQX	.	GT	./.
chr1	117150889	.	C	.	.	LowGQX	END=117150910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	117150911	.	T	.	.	LowGQX	.	GT	./.
chr1	117150912	.	G	.	.	LowGQX	END=117150913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	117150914	.	A	.	.	LowGQX	.	GT	./.
chr1	117150915	.	G	.	.	LowGQX	END=117150924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	117150925	.	T	.	.	LowGQX	.	GT	./.
chr1	117150926	.	G	.	.	LowGQX	END=117150927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	117150928	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=47;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:47:3:1.000
chr1	117150929	.	T	.	.	LowGQX	END=117150930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	117150931	.	C	.	.	LowGQX	.	GT	./.
chr1	117150932	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:47
chr1	117150933	.	G	.	.	LowGQX	.	GT	./.
chr1	117150934	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:47
chr1	117150935	.	C	.	.	LowGQX	.	GT	./.
chr1	117150936	.	G	.	.	LowGQX	END=117150937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	117150938	.	A	.	.	LowGQX	.	GT	./.
chr1	117150939	.	C	.	.	LowGQX	END=117150955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	117156385	.	A	.	.	LowGQX	END=117156799	GT	./.
chr1	117158700	.	A	.	.	LowGQX	END=117159081	GT	./.
chr1	117208818	.	G	.	.	LowGQX	END=117208911	GT	./.
chr1	117208912	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117208913	.	A	.	.	LowGQX	.	GT	./.
chr1	117208914	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117208915	.	C	.	.	LowGQX	.	GT	./.
chr1	117208916	.	C	.	.	LowGQX	END=117208952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117208953	.	G	.	.	LowGQX	.	GT	./.
chr1	117208954	.	C	.	.	LowGQX	END=117208967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117208968	.	C	.	.	LowGQX	.	GT	./.
chr1	117208969	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117208970	.	C	.	.	LowGQX	.	GT	./.
chr1	117208971	.	A	.	.	LowGQX	END=117208977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117214301	.	A	.	.	LowGQX	END=117214460	GT	./.
chr1	117236736	.	G	.	.	LowGQX	END=117236835	GT	./.
chr1	117237379	.	A	.	.	LowGQX	END=117237478	GT	./.
chr1	117248549	.	T	.	.	LowGQX	END=117248648	GT	./.
chr1	117249067	.	C	.	.	LowGQX	END=117249166	GT	./.
chr1	117297096	.	G	.	.	LowGQX	END=117297195	GT	./.
chr1	117297251	.	A	.	.	LowGQX	END=117297593	GT	./.
chr1	117303022	.	A	.	.	LowGQX	END=117303023	GT	./.
chr1	117303024	.	A	.	.	LowGQX	END=117303026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117303027	.	G	.	.	LowGQX	.	GT	./.
chr1	117303028	.	G	.	.	LowGQX	END=117303034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117303035	.	A	.	.	LowGQX	.	GT	./.
chr1	117303036	.	A	.	.	LowGQX	END=117303054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117303055	.	T	.	.	LowGQX	.	GT	./.
chr1	117303056	.	T	.	.	LowGQX	END=117303225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117303226	.	A	.	.	LowGQX	.	GT	./.
chr1	117303227	.	T	.	.	LowGQX	END=117303243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117303244	.	C	.	.	LowGQX	.	GT	./.
chr1	117303245	.	A	.	.	LowGQX	END=117303249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117303250	.	T	.	.	LowGQX	.	GT	./.
chr1	117303251	.	C	.	.	LowGQX	END=117303256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117307104	.	A	.	.	LowGQX	END=117307141	GT	./.
chr1	117307142	.	G	.	.	LowGQX	END=117307160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117307161	.	G	.	.	LowGQX	.	GT	./.
chr1	117307162	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117307163	.	T	.	.	LowGQX	END=117307164	GT	./.
chr1	117307165	.	G	.	.	LowGQX	END=117307167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117307168	.	T	.	.	LowGQX	END=117307169	GT	./.
chr1	117307170	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117307171	.	G	.	.	LowGQX	.	GT	./.
chr1	117307172	.	T	.	.	LowGQX	END=117307173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117307174	.	G	.	.	LowGQX	.	GT	./.
chr1	117307175	.	C	.	.	LowGQX	END=117307177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117307178	.	T	.	.	LowGQX	.	GT	./.
chr1	117307179	.	G	.	.	LowGQX	END=117307184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117307185	.	T	.	.	LowGQX	END=117307186	GT	./.
chr1	117307187	.	T	.	.	LowGQX	END=117307195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117307196	.	C	.	.	LowGQX	.	GT	./.
chr1	117307197	.	C	.	.	LowGQX	END=117307202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117307203	.	G	.	.	LowGQX	.	GT	./.
chr1	117307204	.	A	.	.	LowGQX	END=117307242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117307243	.	T	.	.	LowGQX	.	GT	./.
chr1	117307244	.	T	.	.	LowGQX	END=117307257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117307258	.	G	.	.	LowGQX	END=117307259	GT	./.
chr1	117307260	.	C	.	.	LowGQX	END=117307271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117307272	.	C	.	.	LowGQX	.	GT	./.
chr1	117307273	.	C	.	.	LowGQX	END=117307283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117307284	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	117307285	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117307286	.	T	.	.	LowGQX	.	GT	./.
chr1	117307287	.	C	.	.	LowGQX	END=117307297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117307298	.	C	.	.	LowGQX	END=117307300	GT	./.
chr1	117307301	.	C	.	.	LowGQX	END=117307305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117311084	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117311085	.	G	.	.	LowGQX	.	GT	./.
chr1	117311086	.	A	.	.	LowGQX	END=117311096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117311097	.	G	.	.	LowGQX	.	GT	./.
chr1	117311098	.	A	.	.	LowGQX	END=117311103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117311104	.	G	.	.	LowGQX	.	GT	./.
chr1	117311105	.	A	.	.	LowGQX	END=117311106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117311107	.	C	.	.	LowGQX	.	GT	./.
chr1	117311108	.	C	.	.	LowGQX	END=117311112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117311113	.	G	.	.	LowGQX	.	GT	./.
chr1	117311114	.	A	.	.	LowGQX	END=117311118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117311119	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	117311120	.	T	.	.	LowGQX	END=117311123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117311124	.	G	.	.	LowGQX	.	GT	./.
chr1	117311125	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117311126	.	A	.	.	LowGQX	.	GT	./.
chr1	117311127	.	G	.	.	LowGQX	END=117311128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117311129	.	A	.	.	LowGQX	.	GT	./.
chr1	117311130	.	A	.	.	LowGQX	END=117311147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117311148	.	C	.	.	LowGQX	.	GT	./.
chr1	117311149	.	A	.	.	LowGQX	END=117311164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117311165	.	C	.	.	LowGQX	END=117311407	GT	./.
chr1	117452667	.	C	.	.	LowGQX	END=117452680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117452681	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	117452682	.	T	.	.	LowGQX	END=117452746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117452747	.	A	.	.	LowGQX	END=117452900	GT	./.
chr1	117484335	.	A	.	.	LowGQX	END=117484707	GT	./.
chr1	117487299	.	A	.	.	LowGQX	END=117487716	GT	./.
chr1	117491812	.	A	.	.	LowGQX	END=117492196	GT	./.
chr1	117503863	.	A	.	.	LowGQX	END=117504124	GT	./.
chr1	117504125	.	A	.	.	LowGQX	END=117504179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117504180	.	G	.	.	LowGQX	.	GT	./.
chr1	117504181	.	A	.	.	LowGQX	END=117504209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117504210	.	G	.	.	LowGQX	.	GT	./.
chr1	117504211	.	G	.	.	LowGQX	END=117504220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117504221	.	C	.	.	LowGQX	.	GT	./.
chr1	117504222	.	G	.	.	LowGQX	END=117504259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117504260	.	A	.	.	LowGQX	END=117504261	GT	./.
chr1	117504262	.	G	.	.	LowGQX	END=117504265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117504266	.	G	.	.	LowGQX	.	GT	./.
chr1	117504267	.	T	.	.	LowGQX	END=117504275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117504276	.	T	.	.	LowGQX	END=117504292	GT	./.
chr1	117509531	.	A	.	.	LowGQX	END=117509544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117509545	.	T	.	.	LowGQX	.	GT	./.
chr1	117509546	.	G	.	.	LowGQX	END=117509547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117509548	.	T	.	.	LowGQX	.	GT	./.
chr1	117509549	.	G	.	.	LowGQX	END=117509604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117509605	.	G	.	.	LowGQX	.	GT	./.
chr1	117509606	.	C	.	.	LowGQX	END=117509630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117509631	.	T	.	.	LowGQX	.	GT	./.
chr1	117509632	.	C	.	.	LowGQX	END=117509645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117509646	.	G	.	.	LowGQX	.	GT	./.
chr1	117509647	.	T	.	.	LowGQX	END=117509653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117509654	.	C	.	.	LowGQX	END=117509954	GT	./.
chr1	117516836	.	A	.	.	LowGQX	.	GT	./.
chr1	117516837	.	G	.	.	LowGQX	END=117516947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117527300	.	A	.	.	LowGQX	END=117527520	GT	./.
chr1	117527521	.	C	.	.	LowGQX	END=117527540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117527541	.	A	.	.	LowGQX	.	GT	./.
chr1	117527542	.	C	.	.	LowGQX	END=117527555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117527556	.	A	.	.	LowGQX	.	GT	./.
chr1	117527557	.	A	.	.	LowGQX	END=117527567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117527568	.	A	.	.	LowGQX	.	GT	./.
chr1	117527569	.	T	.	.	LowGQX	END=117527582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117527583	.	G	.	.	LowGQX	.	GT	./.
chr1	117527584	.	T	.	.	LowGQX	END=117527593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117527594	.	T	.	.	LowGQX	.	GT	./.
chr1	117527595	.	G	.	.	LowGQX	END=117527608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117527609	.	T	.	.	LowGQX	.	GT	./.
chr1	117529421	.	A	.	.	LowGQX	END=117529591	GT	./.
chr1	117544412	.	G	.	.	LowGQX	END=117544511	GT	./.
chr1	117552470	.	A	.	.	LowGQX	END=117552854	GT	./.
chr1	117554170	.	A	.	.	LowGQX	END=117554590	GT	./.
chr1	117556026	.	A	.	.	LowGQX	END=117556416	GT	./.
chr1	117559710	.	A	.	.	LowGQX	END=117560097	GT	./.
chr1	117560776	.	A	.	.	LowGQX	END=117561184	GT	./.
chr1	117564193	.	A	.	.	LowGQX	END=117564245	GT	./.
chr1	117564246	.	A	.	.	LowGQX	END=117564408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117564409	.	C	.	.	LowGQX	END=117564607	GT	./.
chr1	117568129	.	A	.	.	LowGQX	END=117568364	GT	./.
chr1	117568365	.	C	.	.	LowGQX	END=117568393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117568394	.	C	.	.	LowGQX	.	GT	./.
chr1	117568395	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117568396	.	G	.	.	LowGQX	.	GT	./.
chr1	117568397	.	G	.	.	LowGQX	END=117568401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117568402	.	G	.	.	LowGQX	.	GT	./.
chr1	117568403	.	A	.	.	LowGQX	END=117568412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117568413	.	C	.	.	LowGQX	.	GT	./.
chr1	117568414	.	A	.	.	LowGQX	END=117568425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117568426	.	G	.	.	LowGQX	.	GT	./.
chr1	117568427	.	T	.	.	LowGQX	END=117568528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117576480	.	A	.	.	LowGQX	END=117576725	GT	./.
chr1	117602877	.	A	.	.	LowGQX	END=117603032	GT	./.
chr1	117603075	.	A	.	.	LowGQX	END=117603122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117603123	.	A	.	.	LowGQX	.	GT	./.
chr1	117603124	.	G	.	.	LowGQX	END=117603136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117603137	.	A	.	.	LowGQX	.	GT	./.
chr1	117603138	.	C	.	.	LowGQX	END=117603151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117603152	.	A	.	.	LowGQX	.	GT	./.
chr1	117603153	.	C	.	.	LowGQX	END=117603181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117605003	.	C	.	.	LowGQX	END=117605102	GT	./.
chr1	117616267	.	T	.	.	LowGQX	END=117616366	GT	./.
chr1	117617490	.	A	.	.	LowGQX	END=117618309	GT	./.
chr1	117618310	.	C	.	.	LowGQX	END=117618483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117618800	.	A	.	.	LowGQX	END=117618918	GT	./.
chr1	117619261	.	A	.	.	LowGQX	END=117619447	GT	./.
chr1	117620536	.	A	.	.	LowGQX	END=117620667	GT	./.
chr1	117622181	.	C	.	.	LowGQX	END=117622280	GT	./.
chr1	117624448	.	A	.	.	LowGQX	END=117624483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117624484	.	G	.	.	LowGQX	.	GT	./.
chr1	117624485	.	A	.	.	LowGQX	END=117624491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117624492	.	T	.	.	LowGQX	.	GT	./.
chr1	117624493	.	C	.	.	LowGQX	END=117624503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117624504	.	A	.	.	LowGQX	END=117624697	GT	./.
chr1	117626638	.	A	.	.	LowGQX	END=117626792	GT	./.
chr1	117629037	.	A	.	.	LowGQX	END=117629067	GT	./.
chr1	117629068	.	C	.	.	LowGQX	END=117629094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117629095	.	C	.	.	LowGQX	.	GT	./.
chr1	117629096	.	C	.	.	LowGQX	END=117629099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117629100	.	A	.	.	LowGQX	.	GT	./.
chr1	117629101	.	A	.	.	LowGQX	END=117629135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117629136	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	117629137	.	A	.	.	LowGQX	END=117629146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	117631421	.	A	.	.	LowGQX	END=117631606	GT	./.
chr1	117632675	.	A	.	.	LowGQX	END=117632832	GT	./.
chr1	117633150	.	C	.	.	LowGQX	END=117633249	GT	./.
chr1	117633942	.	T	.	.	LowGQX	END=117634041	GT	./.
chr1	117634437	.	A	.	.	LowGQX	END=117634517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117634518	.	G	.	.	LowGQX	.	GT	./.
chr1	117634519	.	T	.	.	LowGQX	END=117634574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117635351	.	A	.	.	LowGQX	END=117635525	GT	./.
chr1	117637194	.	G	.	.	LowGQX	END=117637357	GT	./.
chr1	117637911	.	T	.	.	LowGQX	END=117638010	GT	./.
chr1	117638769	.	A	.	.	LowGQX	END=117638923	GT	./.
chr1	117639965	.	T	.	.	LowGQX	END=117640064	GT	./.
chr1	117641443	.	G	.	.	LowGQX	END=117641542	GT	./.
chr1	117644000	.	A	.	.	LowGQX	END=117644148	GT	./.
chr1	117654925	.	C	.	.	LowGQX	END=117655077	GT	./.
chr1	117655979	.	A	.	.	LowGQX	END=117655993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117655994	.	T	.	.	LowGQX	.	GT	./.
chr1	117655995	.	C	.	.	LowGQX	END=117656048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117656049	.	T	.	.	LowGQX	END=117656109	GT	./.
chr1	117658195	.	A	.	.	LowGQX	END=117658230	GT	./.
chr1	117658231	.	G	.	.	LowGQX	END=117658268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117658269	.	G	.	.	LowGQX	END=117658270	GT	./.
chr1	117658271	.	A	.	.	LowGQX	END=117658277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117658278	.	A	.	.	LowGQX	.	GT	./.
chr1	117658279	.	T	.	.	LowGQX	END=117658291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117658292	.	G	.	.	LowGQX	.	GT	./.
chr1	117658293	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117658294	.	A	.	.	LowGQX	.	GT	./.
chr1	117658295	.	C	.	.	LowGQX	END=117658297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117658298	.	T	.	.	LowGQX	.	GT	./.
chr1	117658299	.	T	.	.	LowGQX	END=117658301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117658302	.	T	.	.	LowGQX	.	GT	./.
chr1	117658303	.	C	.	.	LowGQX	END=117658313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117659236	.	A	.	.	LowGQX	END=117659247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117659248	.	T	.	.	LowGQX	.	GT	./.
chr1	117659249	.	A	.	.	LowGQX	END=117659274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117659275	.	C	.	.	LowGQX	.	GT	./.
chr1	117659276	.	G	.	.	LowGQX	END=117659288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117659289	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	117659290	.	T	.	.	LowGQX	END=117659353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117659354	.	G	.	.	LowGQX	.	GT	./.
chr1	117659355	.	G	.	.	LowGQX	END=117659359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117659360	.	G	.	.	LowGQX	.	GT	./.
chr1	117659361	.	T	.	.	LowGQX	END=117659369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117660654	.	A	.	.	LowGQX	END=117661362	GT	./.
chr1	117661363	.	G	.	.	LowGQX	END=117661391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117663334	.	A	.	.	LowGQX	END=117663661	GT	./.
chr1	117663662	.	C	.	.	LowGQX	END=117663707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117663708	.	G	.	.	LowGQX	.	GT	./.
chr1	117663709	.	G	.	.	LowGQX	END=117663712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117663713	.	T	.	.	LowGQX	.	GT	./.
chr1	117663714	.	T	.	.	LowGQX	END=117663722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	117663723	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	117663724	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	117663725	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	117663726	.	A	.	.	LowGQX	END=117663765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	117663766	.	C	.	32.98	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3:60:3
chr1	117663767	.	A	.	.	LowGQX	END=117663770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	117663771	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	117663772	.	C	.	.	LowGQX	END=117663780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	117663781	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	117663782	.	T	.	.	LowGQX	END=117663805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	117663806	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	117663807	.	T	.	.	LowGQX	END=117663808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	117663809	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	117663810	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	117663811	.	T	.	.	LowGQX	END=117663818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117663819	.	G	.	.	LowGQX	.	GT	./.
chr1	117663820	.	A	.	.	LowGQX	END=117663824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117663825	.	C	.	.	LowGQX	.	GT	./.
chr1	117664404	.	C	.	.	LowGQX	END=117664503	GT	./.
chr1	117690278	.	C	.	.	LowGQX	END=117690406	GT	./.
chr1	117695711	.	A	.	.	LowGQX	END=117695993	GT	./.
chr1	117699194	.	A	.	.	LowGQX	END=117699667	GT	./.
chr1	117712712	.	T	.	.	LowGQX	.	GT	./.
chr1	117712713	.	G	.	.	LowGQX	END=117712714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117712715	.	A	.	.	LowGQX	END=117712717	GT	./.
chr1	117712718	.	A	.	.	LowGQX	END=117712724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117712725	.	A	.	.	LowGQX	.	GT	./.
chr1	117712726	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117712727	.	A	.	.	LowGQX	.	GT	./.
chr1	117712728	.	C	.	.	LowGQX	END=117712729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117712730	.	T	.	.	LowGQX	.	GT	./.
chr1	117712731	.	G	.	.	LowGQX	END=117712734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117712735	.	T	.	.	LowGQX	.	GT	./.
chr1	117712736	.	A	.	.	LowGQX	END=117712811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	117712874	.	T	.	.	LowGQX	END=117712886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117712887	.	G	.	.	LowGQX	END=117712973	GT	./.
chr1	117714987	.	T	.	.	LowGQX	END=117715032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117715033	.	T	.	.	LowGQX	END=117715086	GT	./.
chr1	117715719	.	A	.	.	LowGQX	END=117715878	GT	./.
chr1	117753412	.	C	.	.	LowGQX	END=117753445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117753446	.	C	.	.	LowGQX	.	GT	./.
chr1	117753447	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117753448	.	C	.	.	LowGQX	.	GT	./.
chr1	117753449	.	C	.	.	LowGQX	END=117753452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117753453	.	A	.	.	LowGQX	END=117753468	GT	./.
chr1	117753469	.	G	.	.	LowGQX	END=117753473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117753474	.	C	.	.	LowGQX	END=117753475	GT	./.
chr1	117753476	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117753477	.	T	.	.	LowGQX	END=117753478	GT	./.
chr1	117753479	.	G	.	.	LowGQX	END=117753480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117753481	.	T	.	.	LowGQX	END=117753482	GT	./.
chr1	117753483	.	G	.	.	LowGQX	END=117753484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117753485	.	G	.	.	LowGQX	.	GT	./.
chr1	117753486	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117753487	.	A	.	.	LowGQX	.	GT	./.
chr1	117753488	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117753489	.	G	.	.	LowGQX	END=117753490	GT	./.
chr1	117753491	.	T	.	.	LowGQX	END=117753493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117753494	.	C	.	.	LowGQX	.	GT	./.
chr1	117753495	.	A	.	.	LowGQX	END=117753496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117753497	.	C	.	.	LowGQX	.	GT	./.
chr1	117753498	.	G	.	.	LowGQX	END=117753500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117753501	.	T	.	.	LowGQX	.	GT	./.
chr1	117753502	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117753503	.	T	.	.	LowGQX	.	GT	./.
chr1	117753504	.	G	.	.	LowGQX	END=117753510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	117753511	.	G	.	.	LowGQX	.	GT	./.
chr1	117910804	.	C	.	.	PASS	END=117910830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	117910831	.	T	.	.	PASS	END=117910882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	117910883	.	T	.	.	PASS	END=117910981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:265:99:60
chr1	117910982	.	C	.	.	PASS	END=117911043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	117911044	.	C	.	.	PASS	END=117911081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	117911082	.	C	.	.	PASS	END=117911109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	117944806	.	A	.	.	PASS	END=117944844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	117944845	.	G	.	.	PASS	END=117945065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	117948110	.	G	.	.	PASS	END=117948230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	117948231	.	C	.	.	PASS	END=117948302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	117948303	.	C	.	.	PASS	END=117948328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	117957333	.	A	.	.	PASS	END=117957357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	117957358	.	A	.	.	PASS	END=117957378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	117957379	.	C	.	.	PASS	END=117957455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	117963182	.	T	.	.	PASS	END=117963266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	117963267	.	A	.	.	PASS	END=117963281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	117984851	.	A	.	.	PASS	END=117984908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	117984909	.	A	.	.	PASS	END=117984923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	117984924	.	T	.	.	PASS	END=117984950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	118003109	.	A	.	.	PASS	END=118003112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	118003113	.	G	.	.	PASS	END=118003139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	118003140	.	C	.	.	PASS	END=118003236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	118008953	.	C	.	.	PASS	END=118009032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	118009033	.	A	.	.	PASS	END=118009052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	118035767	.	A	.	.	PASS	END=118035776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	118035777	.	T	.	.	PASS	END=118035799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	118035800	.	T	.	.	PASS	END=118035886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	118039353	.	C	.	.	PASS	END=118039388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	118039389	.	T	.	.	PASS	END=118039584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	118039585	.	T	.	.	PASS	END=118039612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	118039613	.	A	.	.	PASS	END=118039634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	118039635	.	T	.	.	PASS	END=118039642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	118042002	.	A	.	.	PASS	END=118042015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	118042016	.	G	.	.	PASS	END=118042049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	118042050	.	G	.	.	PASS	END=118042153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	118042154	.	A	.	.	PASS	END=118042166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	118042167	.	A	.	.	PASS	END=118042178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	118045425	.	T	.	.	PASS	END=118045430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	118045431	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:15:60
chr1	118045432	.	T	.	.	PASS	END=118045467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	118045468	.	C	.	.	PASS	END=118045487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	118045488	.	G	.	.	PASS	END=118045508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	118045509	.	G	.	.	PASS	END=118045564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	118045565	.	A	.	.	PASS	END=118045575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	118045576	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:39:60
chr1	118045577	.	T	.	.	PASS	END=118045594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	118057442	.	T	.	.	LowGQX	END=118057541	GT	./.
chr1	118065445	.	A	.	.	PASS	END=118065479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	118065480	.	T	.	.	PASS	END=118065581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	118065825	.	G	.	.	PASS	END=118065826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	118065827	.	T	.	.	LowGQX	END=118065829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	118065830	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	118065831	.	C	.	.	LowGQX	END=118065834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr1	118065835	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr1	118065836	.	G	.	.	LowGQX	END=118065840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	118065841	.	A	G	89.23	SB	BaseQRankSum=-1.036;DP=10;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9997;MQ=60;MQ0=0;MQRankSum=-1.568;QD=8.92;ReadPosRankSum=0.365;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:6,4:10:99:119,0,167:60:89:0.400
chr1	118065842	.	T	.	.	LowGQX	END=118065857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	118065858	.	T	.	.	LowGQX	END=118065873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	118065874	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	118065875	.	C	.	.	LowGQX	END=118065890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	118065891	.	T	.	.	LowGQX	END=118065899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	118065900	.	T	.	.	LowGQX	END=118065908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	118065909	.	G	.	.	LowGQX	END=118065910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	118065911	.	C	.	.	LowGQX	END=118065922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	118065923	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	118065924	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	118067696	.	T	.	.	LowGQX	END=118067738	GT	./.
chr1	118067739	.	C	.	.	LowGQX	END=118067745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118067746	.	T	.	.	LowGQX	.	GT	./.
chr1	118067747	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118067748	.	C	.	.	LowGQX	.	GT	./.
chr1	118067749	.	C	.	.	LowGQX	END=118067750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118067751	.	A	.	.	LowGQX	.	GT	./.
chr1	118067752	.	G	.	.	LowGQX	END=118067760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118067761	.	T	.	.	LowGQX	.	GT	./.
chr1	118067762	.	T	.	.	LowGQX	END=118067774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118067775	.	T	.	.	LowGQX	.	GT	./.
chr1	118067776	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118067777	.	A	.	.	LowGQX	END=118067778	GT	./.
chr1	118067779	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118067780	.	G	.	.	LowGQX	.	GT	./.
chr1	118067781	.	A	.	.	LowGQX	END=118067782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118067783	.	G	.	.	LowGQX	.	GT	./.
chr1	118067784	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118067785	.	T	.	.	LowGQX	.	GT	./.
chr1	118067786	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118067787	.	A	.	.	LowGQX	.	GT	./.
chr1	118067788	.	A	.	.	LowGQX	END=118067795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118165489	.	A	.	.	LowGQX	END=118165527	GT	./.
chr1	118165528	.	C	.	.	LowGQX	END=118165711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118165712	.	C	.	.	LowGQX	.	GT	./.
chr1	118165713	.	G	.	.	LowGQX	END=118165761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118165762	.	T	.	.	LowGQX	END=118166668	GT	./.
chr1	118413165	.	A	.	.	LowGQX	END=118413318	GT	./.
chr1	118420585	.	G	.	.	LowGQX	END=118420776	GT	./.
chr1	118424423	.	A	.	.	LowGQX	END=118424522	GT	./.
chr1	118426108	.	A	.	.	LowGQX	END=118426251	GT	./.
chr1	118429188	.	T	.	.	LowGQX	END=118429287	GT	./.
chr1	118430257	.	A	.	.	LowGQX	END=118430408	GT	./.
chr1	118439453	.	A	.	.	LowGQX	END=118439518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118439519	.	G	.	.	LowGQX	END=118439613	GT	./.
chr1	118441677	.	A	.	.	LowGQX	END=118441712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118441713	.	C	.	.	LowGQX	END=118441763	GT	./.
chr1	118441764	.	T	.	.	LowGQX	END=118441840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118449117	.	T	.	.	LowGQX	END=118449189	GT	./.
chr1	118449190	.	A	.	.	LowGQX	END=118449193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118449194	.	T	.	.	LowGQX	END=118449196	GT	./.
chr1	118449197	.	T	.	.	LowGQX	END=118449201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118449202	.	T	.	.	LowGQX	END=118449203	GT	./.
chr1	118449204	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118449205	.	C	.	.	LowGQX	.	GT	./.
chr1	118449206	.	T	.	.	LowGQX	END=118449208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118449209	.	G	.	.	LowGQX	.	GT	./.
chr1	118449210	.	G	.	.	LowGQX	END=118449211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118449212	.	A	.	.	LowGQX	END=118449213	GT	./.
chr1	118449214	.	A	.	.	LowGQX	END=118449216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118454611	.	C	.	.	LowGQX	END=118454710	GT	./.
chr1	118455150	.	A	.	.	LowGQX	END=118455307	GT	./.
chr1	118461217	.	A	.	.	LowGQX	END=118461396	GT	./.
chr1	118462803	.	A	.	.	LowGQX	END=118462837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118462838	.	T	.	.	LowGQX	.	GT	./.
chr1	118462839	.	A	.	.	LowGQX	END=118462862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118462863	.	C	.	.	LowGQX	.	GT	./.
chr1	118462864	.	T	.	.	LowGQX	END=118462886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118462887	.	T	.	.	LowGQX	END=118462982	GT	./.
chr1	118475941	.	A	.	.	LowGQX	END=118475944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118475945	.	G	.	.	LowGQX	END=118476115	GT	./.
chr1	118476229	.	A	.	.	LowGQX	END=118476328	GT	./.
chr1	118477094	.	A	.	.	LowGQX	END=118477307	GT	./.
chr1	118479390	.	A	.	.	LowGQX	END=118479512	GT	./.
chr1	118481093	.	C	.	.	LowGQX	END=118481192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118482098	.	A	.	.	LowGQX	END=118482173	GT	./.
chr1	118482174	.	G	.	.	LowGQX	END=118482177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118482178	.	A	.	.	LowGQX	.	GT	./.
chr1	118482179	.	T	.	.	LowGQX	END=118482194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118482195	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	118482196	.	G	.	.	LowGQX	END=118482197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	118483448	.	A	.	.	LowGQX	END=118483555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118483556	.	C	.	.	LowGQX	END=118483565	GT	./.
chr1	118483745	.	A	.	.	LowGQX	END=118483850	GT	./.
chr1	118484321	.	G	.	.	LowGQX	END=118484472	GT	./.
chr1	118485008	.	A	.	.	LowGQX	END=118485168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118485169	.	T	.	.	LowGQX	.	GT	./.
chr1	118486017	.	A	.	.	LowGQX	END=118486251	GT	./.
chr1	118488706	.	T	.	.	LowGQX	END=118488805	GT	./.
chr1	118491026	.	A	.	.	LowGQX	END=118491131	GT	./.
chr1	118492367	.	T	.	.	LowGQX	END=118492466	GT	./.
chr1	118492616	.	A	.	.	LowGQX	END=118492617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118492618	.	A	.	.	LowGQX	.	GT	./.
chr1	118492619	.	C	.	.	LowGQX	END=118492657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118492658	.	G	.	.	LowGQX	.	GT	./.
chr1	118492659	.	A	.	.	LowGQX	END=118492660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118492661	.	G	.	.	LowGQX	.	GT	./.
chr1	118492662	.	T	.	.	LowGQX	END=118492663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118492664	.	C	.	.	LowGQX	.	GT	./.
chr1	118492665	.	T	.	.	LowGQX	END=118492671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118492672	.	C	.	.	LowGQX	.	GT	./.
chr1	118492673	.	A	.	.	LowGQX	END=118492687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118492688	.	C	.	.	LowGQX	.	GT	./.
chr1	118492689	.	A	.	.	LowGQX	END=118492732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118492733	.	T	.	.	LowGQX	END=118492734	GT	./.
chr1	118492735	.	C	.	.	LowGQX	END=118492748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118492749	.	T	.	.	LowGQX	.	GT	./.
chr1	118492750	.	A	.	.	LowGQX	END=118492755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118493385	.	T	.	.	LowGQX	END=118493535	GT	./.
chr1	118494597	.	A	.	.	LowGQX	END=118494698	GT	./.
chr1	118494699	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118494700	.	G	.	.	LowGQX	.	GT	./.
chr1	118494701	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118494918	.	A	.	.	LowGQX	END=118495033	GT	./.
chr1	118495149	.	A	.	.	LowGQX	END=118495171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	118495172	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr1	118495173	.	G	.	.	LowGQX	END=118495179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	118495180	.	T	.	.	LowGQX	END=118495181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:60
chr1	118495182	.	T	.	.	LowGQX	END=118495201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	118495202	.	G	.	.	LowGQX	END=118495287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118495545	.	T	.	.	LowGQX	END=118495577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	118495578	.	G	.	.	LowGQX	END=118495613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118495614	.	C	.	.	LowGQX	END=118495615	GT	./.
chr1	118495616	.	A	.	.	LowGQX	END=118495626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118495627	.	A	.	.	LowGQX	.	GT	./.
chr1	118495628	.	A	.	.	LowGQX	END=118495631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118495632	.	T	.	.	LowGQX	.	GT	./.
chr1	118495633	.	G	.	.	LowGQX	END=118495644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	118496027	.	G	.	.	LowGQX	END=118496181	GT	./.
chr1	118496627	.	T	.	.	LowGQX	END=118496726	GT	./.
chr1	118497177	.	G	.	.	LowGQX	END=118497276	GT	./.
chr1	118497910	.	A	.	.	LowGQX	END=118498009	GT	./.
chr1	118499689	.	A	.	.	LowGQX	END=118499821	GT	./.
chr1	118501530	.	C	.	.	LowGQX	END=118501629	GT	./.
chr1	118501913	.	A	.	.	LowGQX	END=118502072	GT	./.
chr1	118506420	.	A	.	.	PASS	END=118506520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	118506521	.	G	.	.	PASS	END=118506550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	118506551	.	T	.	.	PASS	END=118506563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	118509221	.	T	.	.	PASS	END=118509234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	118509235	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:46:60
chr1	118509236	.	T	.	.	PASS	END=118509266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	118509267	.	G	.	.	PASS	END=118509302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	118509303	.	C	.	.	PASS	END=118509347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	118509348	.	T	.	.	PASS	END=118509349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	118509350	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:72:60
chr1	118509351	.	A	.	.	PASS	END=118509378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:94:60
chr1	118512607	.	C	.	.	PASS	END=118512701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	118512702	.	T	.	.	PASS	END=118512754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	118512755	.	A	.	.	PASS	END=118512759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	118514484	.	A	.	.	PASS	END=118514514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	118514515	.	C	.	.	PASS	END=118514598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	118514599	.	T	.	.	PASS	END=118514638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	118514639	.	G	.	.	PASS	END=118514672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	118516046	.	A	.	.	PASS	END=118516052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	118516053	.	C	.	.	PASS	END=118516111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	118516112	.	T	.	.	PASS	END=118516158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	118516159	.	T	.	.	PASS	END=118516179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	118516180	.	T	.	.	PASS	END=118516181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	118516182	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:60:60
chr1	118516183	.	T	.	.	PASS	END=118516186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	118523891	.	A	.	.	PASS	END=118523937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:87:60
chr1	118523938	.	A	.	.	PASS	END=118523984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	118523985	.	C	.	.	PASS	END=118524022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	118524023	.	A	.	.	PASS	END=118524043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	118524044	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:66:60
chr1	118524045	.	C	.	.	PASS	END=118524070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	118526432	.	A	.	.	PASS	END=118526519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	118526520	.	C	.	.	PASS	END=118526537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	118526538	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:99:60
chr1	118527304	.	A	.	.	PASS	END=118527351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	118527352	.	A	.	.	PASS	END=118527463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	118530431	.	T	.	.	PASS	END=118530470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	118530471	.	C	.	.	PASS	END=118530530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	118530726	.	A	.	.	PASS	END=118530829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	118533402	.	A	.	.	PASS	END=118533418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	118533419	.	T	.	.	PASS	END=118533486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	118533487	.	C	.	.	PASS	END=118533525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	118533526	.	A	.	.	PASS	END=118533556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	118534036	.	A	.	.	PASS	END=118534037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	118534038	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:52:60
chr1	118534039	.	A	.	.	PASS	END=118534068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	118534069	.	C	.	.	PASS	END=118534107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	118534108	.	T	.	.	PASS	END=118534153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	118535087	.	A	.	.	PASS	END=118535216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	118535217	.	C	.	.	PASS	END=118535264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	118535265	.	T	.	.	PASS	END=118535273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	118537027	.	A	.	.	PASS	END=118537078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	118537079	.	C	.	.	PASS	END=118537135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	118537136	.	C	.	.	PASS	END=118537155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	118538991	.	A	.	.	PASS	END=118539027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	118539028	.	G	.	.	PASS	END=118539113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	118539114	.	A	.	.	PASS	END=118539125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	118539219	.	A	.	.	PASS	END=118539266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	118539267	.	G	.	.	PASS	END=118539348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	118539349	.	G	.	.	PASS	END=118539368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	118548035	.	A	.	.	PASS	END=118548072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	118548073	.	G	.	.	PASS	END=118548184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	118548185	.	T	.	.	PASS	END=118548221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	118548222	.	A	.	.	PASS	END=118548227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	118550665	.	A	.	.	PASS	END=118550765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	118550766	.	T	.	.	PASS	END=118550795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	118550796	.	C	.	.	PASS	END=118550814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	118550815	.	C	.	.	PASS	END=118550823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	118554849	.	A	.	.	PASS	END=118554869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	118554870	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:68:63:60
chr1	118554871	.	A	.	.	PASS	END=118554903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	118554904	.	G	.	.	PASS	END=118554945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	118554946	.	C	.	.	PASS	END=118554967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	118554968	.	C	.	.	PASS	END=118554997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	118558586	.	A	.	.	PASS	END=118558610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	118558611	.	C	.	.	PASS	END=118558697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	118558698	.	A	.	.	PASS	END=118558737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:94:60
chr1	118558738	.	T	.	.	PASS	END=118558759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	118558760	.	A	.	.	PASS	END=118558776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	118558777	.	C	.	.	PASS	END=118558807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	118565925	.	A	.	.	PASS	END=118566064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	118566065	.	C	.	.	PASS	END=118566088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	118567839	.	T	.	.	PASS	END=118567862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	118567863	.	G	.	.	PASS	END=118567881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	118567882	.	A	.	.	PASS	END=118568013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	118568014	.	G	.	.	PASS	END=118568035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	118568036	.	T	.	.	PASS	END=118568041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	118570895	.	A	.	.	PASS	END=118570938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	118570939	.	G	.	.	PASS	END=118570954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	118570955	.	G	.	.	PASS	END=118570998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	118570999	.	C	.	.	PASS	END=118571019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	118574313	.	A	.	.	PASS	END=118574427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	118574428	.	C	.	.	PASS	END=118574451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	118574452	.	G	.	.	PASS	END=118574490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	118574491	.	C	.	.	PASS	END=118574492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	118579391	.	A	.	.	PASS	END=118579422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	118579423	.	T	.	.	PASS	END=118579496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	118579497	.	T	.	.	PASS	END=118579508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	118581913	.	A	.	.	PASS	END=118581969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	118581970	.	C	.	.	PASS	END=118582044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr1	118582045	.	T	.	.	PASS	END=118582087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	118582088	.	A	.	.	PASS	END=118582102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	118583351	.	A	.	.	PASS	END=118583400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	118583401	.	G	.	.	PASS	END=118583428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	118583429	.	T	.	.	PASS	END=118583457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	118583458	.	C	.	.	PASS	END=118583510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:96:60
chr1	118584424	.	A	.	.	PASS	END=118584487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	118584488	.	C	.	.	PASS	END=118584508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	118584509	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:129:37:60
chr1	118584510	.	C	.	.	PASS	END=118584611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	118584612	.	T	.	.	PASS	END=118584667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	118596621	.	T	.	.	PASS	END=118596697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	118596698	.	T	.	.	PASS	END=118596715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	118596716	.	C	.	.	PASS	END=118596720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	118598334	.	A	.	.	PASS	END=118598429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:96:60
chr1	118598430	.	T	.	.	PASS	END=118598493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	118598494	.	T	.	.	PASS	END=118598539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	118609366	.	A	.	.	PASS	END=118609501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	118609502	.	C	.	.	PASS	END=118609524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	118616425	.	G	.	.	PASS	END=118616446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	118616447	.	G	.	.	PASS	END=118616507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	118616508	.	G	.	.	PASS	END=118616520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	118616521	.	C	.	.	PASS	END=118616592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	118617083	.	T	.	.	PASS	END=118617123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	118617124	.	A	.	.	PASS	END=118617229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	118617230	.	A	.	.	PASS	END=118617242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	118623722	.	A	.	.	PASS	END=118623750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	118623751	.	T	.	.	PASS	END=118623783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	118623784	.	T	.	.	PASS	END=118623916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:266:99:60
chr1	118623917	.	T	.	.	PASS	END=118623944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:60
chr1	118624036	.	A	.	.	PASS	END=118624239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	118624240	.	T	.	.	PASS	END=118624267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	118628543	.	A	.	.	PASS	END=118628586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	118628587	.	G	.	.	PASS	END=118628656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	118628657	.	C	.	.	PASS	END=118628697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	118628698	.	G	.	.	PASS	END=118628722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	118629292	.	A	.	.	PASS	END=118629305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	118629306	.	C	.	.	PASS	END=118629322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	118629323	.	C	.	.	PASS	END=118629352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	118629353	.	T	.	.	PASS	END=118629409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:263:99:60
chr1	118629422	.	A	.	.	PASS	END=118629471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:261:99:60
chr1	118629472	.	C	.	.	PASS	END=118629514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	118629515	.	A	.	.	PASS	END=118629537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	118629538	.	C	.	.	PASS	END=118629627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	118629628	.	C	.	.	PASS	END=118629633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	118634227	.	A	.	.	PASS	END=118634238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	118634239	.	A	.	.	PASS	END=118634278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	118634279	.	G	.	.	PASS	END=118634343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	118634540	.	A	.	.	PASS	END=118634572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	118634573	.	T	.	.	PASS	END=118634639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	118635777	.	A	.	.	PASS	END=118635853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	118635854	.	C	.	.	PASS	END=118635942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	118640291	.	A	.	.	PASS	END=118640380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	118640381	.	G	.	.	PASS	END=118640476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	118642217	.	C	.	.	PASS	END=118642234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	118642235	.	A	.	.	PASS	END=118642262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	118642263	.	A	.	.	PASS	END=118642390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:256:99:60
chr1	118642391	.	T	.	.	PASS	END=118642417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	118642418	.	C	.	.	PASS	END=118642425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	118644361	.	A	.	.	PASS	END=118644381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	118644382	.	G	.	.	PASS	END=118644429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	118644430	.	A	G	2112.76	PASS	BaseQRankSum=-0.954;DP=161;Dels=0.00;FS=2.241;HRun=0;HaplotypeScore=22.8815;MQ=60;MQ0=0;MQRankSum=0.637;QD=13.12;ReadPosRankSum=0.343;SB=-829.29	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:78,82:161:99:2143,0,2058:60:99:0.513
chr1	118644431	.	T	.	.	PASS	END=118644519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	118644520	.	C	.	.	PASS	END=118644551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	118657891	.	A	.	.	PASS	END=118657904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	118657905	.	T	.	.	PASS	END=118657921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr1	118657922	.	T	.	.	PASS	END=118657975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	118657976	.	T	.	.	PASS	END=118658038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	118658039	.	A	.	.	PASS	END=118658062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:79:60
chr1	118658063	.	A	.	.	PASS	END=118658066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	118693160	.	A	.	.	PASS	END=118693169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	118693170	.	T	.	.	PASS	END=118693185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	118693186	.	T	.	.	PASS	END=118693216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	118693217	.	T	C	986.32	PASS	BaseQRankSum=-0.390;DP=75;Dels=0.00;FS=3.284;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-1.830;QD=13.15;ReadPosRankSum=1.364;SB=-589.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,39:75:99:1016,0,966:60:99:0.527
chr1	118693218	.	G	.	.	PASS	END=118693259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	118693850	.	A	.	.	PASS	END=118693856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr1	118693857	.	G	.	.	PASS	END=118693874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	118693875	.	A	.	.	PASS	END=118693877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	118693878	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:46:60
chr1	118693879	.	C	.	.	PASS	END=118693888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	118693889	.	A	.	.	PASS	END=118693900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	118693901	.	G	.	.	PASS	END=118693994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	118727688	.	G	.	.	PASS	END=118727704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	118727705	.	G	.	.	PASS	END=118727787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	119427304	.	G	.	.	LowGQX	END=119427307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	119427308	.	C	.	.	LowGQX	END=119427309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	119427310	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	119427311	.	T	.	.	LowGQX	END=119427312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	119427313	.	G	.	.	PASS	END=119427316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	119427317	.	C	.	.	LowGQX	END=119427318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	119427319	.	T	.	.	PASS	END=119427320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	119427321	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	119427322	.	T	.	.	PASS	END=119427335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	119427336	.	G	.	.	PASS	END=119427348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	119427349	.	T	.	.	PASS	END=119427351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	119427352	.	C	.	.	PASS	END=119427359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	119427360	.	C	.	.	PASS	END=119427372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	119427373	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:75:60
chr1	119427374	.	A	.	.	PASS	END=119427387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	119427388	.	G	.	.	PASS	END=119427397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	119427398	.	G	.	.	PASS	END=119427434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	119427435	.	G	.	.	PASS	END=119427461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	119427462	.	T	.	.	PASS	END=119427476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	119427477	.	C	.	.	PASS	END=119427514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	119427515	.	C	.	.	PASS	END=119427544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr1	119427545	.	C	.	.	PASS	END=119427644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:304:99:60
chr1	119427645	.	T	.	.	PASS	END=119427906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:371:99:60
chr1	119427907	.	A	.	.	PASS	END=119427931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:301:99:60
chr1	119427932	.	T	.	.	PASS	END=119428007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	119428008	.	A	.	.	PASS	END=119428060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	119428061	.	G	.	.	PASS	END=119428106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	119428107	.	T	.	.	PASS	END=119428120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	119428121	.	G	.	.	PASS	END=119428132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	119428133	.	C	.	.	PASS	END=119428170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	119428171	.	A	.	.	PASS	END=119428190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	119433489	.	C	.	.	LowGQX	END=119433588	GT	./.
chr1	119441600	.	A	.	.	PASS	END=119441616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	119441617	.	A	.	.	PASS	END=119441630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	119441631	.	G	.	.	PASS	END=119441643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	119441644	.	G	.	.	PASS	END=119441667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	119441668	.	G	.	.	PASS	END=119441689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	119441690	.	G	.	.	PASS	END=119441706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	119441707	.	C	.	.	PASS	END=119441800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	119443967	.	C	.	.	LowGQX	END=119444066	GT	./.
chr1	119456687	.	G	.	.	PASS	END=119456704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	119456705	.	G	.	.	PASS	END=119456754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	119456755	.	T	.	.	PASS	END=119456783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	119456784	.	C	.	.	PASS	END=119456850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	119456851	.	T	.	.	PASS	END=119456853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	119466008	.	G	.	.	PASS	END=119466028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	119466029	.	A	.	.	PASS	END=119466041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	119466042	.	C	.	.	PASS	END=119466049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	119466050	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:75:60
chr1	119466051	.	C	.	.	PASS	END=119466085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	119466086	.	G	.	.	PASS	END=119466124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	119466125	.	A	.	.	PASS	END=119466223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	119466224	.	G	.	.	PASS	END=119466267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	119466268	.	A	.	.	PASS	END=119466274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:92:60
chr1	119466275	.	A	G	667.64	PASS	BaseQRankSum=-1.072;DP=60;Dels=0.00;FS=8.979;HRun=0;HaplotypeScore=9.5719;MQ=60;MQ0=0;MQRankSum=0.244;QD=11.13;ReadPosRankSum=-0.362;SB=-98.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,30:60:99:698,0,709:60:99:0.500
chr1	119466276	.	T	.	.	PASS	END=119466277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	119467218	.	A	.	.	PASS	END=119467226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	119467227	.	A	.	.	PASS	END=119467247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	119467248	.	A	.	.	PASS	END=119467271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	119467272	.	T	.	.	PASS	END=119467309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:88:60
chr1	119467310	.	T	.	.	PASS	END=119467373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	119467374	.	A	.	.	PASS	END=119467394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	119467395	.	A	.	.	PASS	END=119467408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	119467409	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:60:60
chr1	119467410	.	C	.	.	PASS	END=119467413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:72:60
chr1	119467414	.	A	.	.	PASS	END=119467424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	119467425	.	G	.	.	PASS	END=119467436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	119467437	.	A	.	.	PASS	END=119467453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	119467454	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr1	119467455	.	A	.	.	PASS	END=119467460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	119467461	.	G	.	.	PASS	END=119467472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	119467473	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:39:60
chr1	119467474	.	A	.	.	PASS	END=119467478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	119467479	.	G	.	.	PASS	END=119467486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	119467487	.	A	.	.	PASS	END=119467488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	119467489	.	G	.	.	PASS	END=119467491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	119469082	.	T	.	.	PASS	END=119469177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	119469178	.	T	.	.	PASS	END=119469182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	119469183	.	C	.	.	PASS	END=119469193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	119469194	.	C	.	.	PASS	END=119469205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	119469206	.	T	.	.	PASS	END=119469230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr1	119469231	.	C	.	.	PASS	END=119469273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	119469274	.	T	.	.	PASS	END=119469285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	119474191	.	C	.	.	PASS	END=119474300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	119474301	.	A	.	.	PASS	END=119474320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	119474321	.	G	.	.	PASS	END=119474341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	119474342	.	T	.	.	PASS	END=119474383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	119474384	.	T	.	.	PASS	END=119474395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	119474396	.	A	.	.	PASS	END=119474397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	119474398	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:21:60
chr1	119474399	.	A	.	.	PASS	END=119474412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	119474413	.	T	.	.	PASS	END=119474424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	119474425	.	T	.	.	PASS	END=119474431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	119474432	.	C	.	.	PASS	END=119474437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	119474438	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	119474439	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	119474440	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	119474441	.	T	.	.	PASS	END=119474445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	119474446	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	119474447	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	119474448	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	119474449	.	T	.	.	LowGQX	END=119474455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	119530213	.	C	.	.	LowGQX	END=119530418	GT	./.
chr1	119575532	.	T	.	.	LowGQX	END=119575985	GT	./.
chr1	119575986	.	G	.	.	LowGQX	END=119576013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	119576714	.	T	.	.	LowGQX	END=119576779	GT	./.
chr1	119576780	.	T	.	.	LowGQX	END=119576838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	119584880	.	T	.	.	LowGQX	END=119584979	GT	./.
chr1	119588196	.	G	.	.	LowGQX	END=119588295	GT	./.
chr1	119618971	.	A	.	.	LowGQX	END=119619232	GT	./.
chr1	119683173	.	G	.	.	LowGQX	END=119683272	GT	./.
chr1	119923281	.	T	.	.	LowGQX	END=119923380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	119923700	.	G	.	.	LowGQX	END=119923841	GT	./.
chr1	119925536	.	A	.	.	LowGQX	END=119925691	GT	./.
chr1	119927397	.	A	.	.	LowGQX	.	GT	./.
chr1	119927398	.	G	.	.	LowGQX	END=119927404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	119927405	.	A	.	.	LowGQX	.	GT	./.
chr1	119927406	.	A	.	.	LowGQX	END=119927424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	119927425	.	A	.	.	LowGQX	.	GT	./.
chr1	119927426	.	T	.	.	LowGQX	END=119927430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	119927431	.	A	.	.	LowGQX	.	GT	./.
chr1	119927432	.	G	.	.	LowGQX	END=119927439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	119927440	.	G	.	.	LowGQX	.	GT	./.
chr1	119927441	.	C	.	.	LowGQX	END=119927447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	119927448	.	T	.	.	LowGQX	.	GT	./.
chr1	119927449	.	A	.	.	LowGQX	END=119927457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	119927458	.	G	.	.	LowGQX	.	GT	./.
chr1	119927459	.	A	.	.	LowGQX	END=119927471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	119927472	.	A	.	.	LowGQX	END=119927473	GT	./.
chr1	119927474	.	C	.	.	LowGQX	END=119927599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	119927600	.	G	.	.	LowGQX	END=119927639	GT	./.
chr1	119927640	.	G	.	.	LowGQX	END=119927644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	119927645	.	T	.	.	LowGQX	.	GT	./.
chr1	119927646	.	A	.	.	LowGQX	END=119927650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	119927651	.	T	.	.	LowGQX	.	GT	./.
chr1	119927652	.	A	.	.	LowGQX	END=119927656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	119927657	.	A	.	.	LowGQX	.	GT	./.
chr1	119927658	.	T	.	.	LowGQX	END=119927661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	119927662	.	C	.	.	LowGQX	.	GT	./.
chr1	119927663	.	A	.	.	LowGQX	END=119927678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	119929243	.	A	.	.	LowGQX	END=119929456	GT	./.
chr1	119934731	.	A	.	.	LowGQX	END=119934754	GT	./.
chr1	119934755	.	T	.	.	LowGQX	END=119934799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	119934800	.	T	.	.	LowGQX	.	GT	./.
chr1	119934801	.	C	.	.	LowGQX	END=119934827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	119934828	.	T	.	.	LowGQX	.	GT	./.
chr1	119934829	.	C	.	.	LowGQX	END=119934893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	119935226	.	C	.	.	LowGQX	END=119935325	GT	./.
chr1	119936386	.	T	.	.	LowGQX	END=119936485	GT	./.
chr1	119957992	.	A	.	.	PASS	END=119958013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	119958014	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:90:60
chr1	119958015	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:46:60
chr1	119958016	.	G	.	.	PASS	END=119958045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	119958046	.	G	.	.	PASS	END=119958064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	119958065	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:59:60
chr1	119958066	.	A	.	.	PASS	END=119958091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	119958092	.	G	.	.	PASS	END=119958196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	119958197	.	G	.	.	PASS	END=119958226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	119958227	.	T	.	.	PASS	END=119958235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	119961990	.	T	.	.	PASS	END=119962002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	119962003	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:66:60
chr1	119962004	.	A	.	.	PASS	END=119962021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	119962022	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr1	119962023	.	T	.	.	PASS	END=119962028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:93:60
chr1	119962029	.	G	.	.	PASS	END=119962042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	119962043	.	C	.	.	PASS	END=119962169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	119962170	.	C	.	.	PASS	END=119962179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	119962180	.	G	.	.	PASS	END=119962209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	119962210	.	A	.	.	PASS	END=119962214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	119962215	.	C	.	.	PASS	END=119962231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	119962232	.	A	.	.	PASS	END=119962238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	119962239	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:57:60
chr1	119962240	.	G	.	.	PASS	END=119962256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	119964381	.	C	.	.	LowGQX	END=119964391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	119964392	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	119964393	.	G	.	.	LowGQX	END=119964401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	119964402	.	T	.	.	LowGQX	END=119964403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	119964404	.	A	.	.	LowGQX	END=119964412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	119964413	.	T	.	.	LowGQX	END=119964414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	119964415	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	119964416	.	T	.	.	LowGQX	END=119964422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	119964423	.	C	.	9.98	LowGQX	DP=10;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:0.04:60:0
chr1	119964424	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	119964425	.	T	.	.	LowGQX	END=119964427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	119964428	.	G	.	.	LowGQX	END=119964430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	119964431	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	119964432	.	G	.	.	PASS	END=119964435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	119964436	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	119964437	.	C	.	.	PASS	END=119964439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	119964440	.	C	.	.	PASS	END=119964456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:33:60
chr1	119964457	.	T	.	.	PASS	END=119964459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:30:60
chr1	119964460	.	C	.	.	PASS	END=119964476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chr1	119964477	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:27:60
chr1	119964478	.	C	.	.	PASS	END=119964494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chr1	119964495	.	G	.	.	PASS	END=119964540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	119964541	.	C	.	.	PASS	END=119964562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	119964563	.	G	.	.	PASS	END=119964578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	119964579	.	C	.	.	PASS	END=119964587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	119964588	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:53:60
chr1	119964589	.	G	.	.	PASS	END=119964620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	119964621	.	T	.	.	PASS	END=119964684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	119964685	.	A	.	.	PASS	END=119964719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	119964720	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:56:60
chr1	119964721	.	C	.	.	PASS	END=119964729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr1	119964730	.	T	.	.	PASS	END=119964733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	119964734	.	G	.	.	PASS	END=119964740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	119964741	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:54:60
chr1	119964742	.	C	.	.	PASS	END=119964744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	119964745	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:50:60
chr1	119964746	.	A	.	.	PASS	END=119964762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	119964763	.	T	.	.	PASS	END=119964792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	119964793	.	C	.	.	PASS	END=119964805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	119964806	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:42:60
chr1	119964807	.	T	.	.	PASS	END=119964831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	119964832	.	G	.	.	PASS	END=119964838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	119964839	.	C	.	.	PASS	END=119964855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	119964856	.	G	.	.	PASS	END=119964895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	119964896	.	G	.	.	PASS	END=119964897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:67:60
chr1	119964898	.	C	.	.	PASS	END=119965012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	119965013	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:36:60
chr1	119965014	.	T	.	.	PASS	END=119965056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	119965057	.	A	.	.	PASS	END=119965068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	119965069	.	C	.	.	PASS	END=119965111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	119965112	.	T	.	.	PASS	END=119965212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:58
chr1	119965213	.	C	.	.	PASS	END=119965223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:57
chr1	119965224	.	T	.	.	PASS	END=119965236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:57
chr1	119965237	.	T	.	.	PASS	END=119965262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:56
chr1	119965263	.	T	.	.	PASS	END=119965267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:56
chr1	119965268	.	G	.	.	PASS	END=119965270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:57
chr1	119965271	.	G	.	.	PASS	END=119965294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:58
chr1	119985501	.	A	.	.	PASS	END=119985609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	119985610	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:69:60
chr1	119985611	.	A	.	.	PASS	END=119985638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	119985639	.	A	.	.	PASS	END=119985648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	119985649	.	G	.	.	PASS	END=119985675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	119985676	.	C	.	.	PASS	END=119985682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	119985683	.	G	.	.	PASS	END=119985687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	119985688	.	T	.	.	PASS	END=119985708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	119985709	.	G	.	.	PASS	END=119985712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	119985713	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:2:60
chr1	119985714	.	A	.	.	PASS	END=119985731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	119985732	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	119985733	.	A	.	.	PASS	END=119985738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	119985739	.	A	.	.	LowGQX	END=119985740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	119985741	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	119985742	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	119985743	.	C	.	.	PASS	END=119985763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	119985764	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	119985765	.	G	.	.	PASS	END=119985766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	119985767	.	T	.	.	LowGQX	END=119985773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	119985774	.	C	.	.	LowGQX	END=119985777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	119985778	.	T	.	.	LowGQX	END=119985787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	119985788	.	G	.	6.75	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.02:60:0
chr1	119985789	.	A	.	.	LowGQX	END=119985853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	119985854	.	G	.	.	LowGQX	END=119985862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	120050093	.	G	.	.	PASS	END=120050104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	120050105	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:49:60
chr1	120050106	.	G	.	.	PASS	END=120050150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:96:60
chr1	120050151	.	A	.	.	PASS	END=120050210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	120050211	.	G	.	.	PASS	END=120050246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	120054124	.	A	.	.	PASS	END=120054152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	120054153	.	T	.	.	PASS	END=120054266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	120054267	.	C	.	.	PASS	END=120054292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	120056455	.	A	.	.	PASS	END=120056460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	120056461	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:3:60
chr1	120056462	.	C	.	.	PASS	END=120056486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	120056487	.	A	.	.	PASS	END=120056489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	120056490	.	C	.	.	PASS	END=120056515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	120056516	.	A	.	.	PASS	END=120056536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	120056537	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:9:60
chr1	120056538	.	C	.	.	PASS	END=120056579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	120056580	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:33:60
chr1	120056581	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:6:60
chr1	120056582	.	C	.	.	PASS	END=120056593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	120056594	.	A	.	.	PASS	END=120056598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	120056599	.	G	.	.	PASS	END=120056603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	120056604	.	C	.	.	PASS	END=120056612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	120056613	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:27:60
chr1	120056614	.	A	.	.	PASS	END=120056659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	120056660	.	T	.	.	PASS	END=120056661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr1	120056662	.	G	.	.	PASS	END=120056672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	120056673	.	A	.	.	PASS	END=120056683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	120056684	.	C	.	.	PASS	END=120056708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	120056709	.	T	.	.	PASS	END=120056730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	120056731	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:36:60
chr1	120056732	.	C	.	.	PASS	END=120056736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	120056737	.	C	.	.	PASS	END=120056788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	120056789	.	G	.	.	PASS	END=120056857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	120056858	.	A	.	.	PASS	END=120056863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	120056864	.	C	.	.	PASS	END=120056870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	120056871	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:63:60
chr1	120056872	.	C	.	.	PASS	END=120056874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	120056875	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:75:60
chr1	120056876	.	A	.	.	PASS	END=120056893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	120056894	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:36:60
chr1	120056895	.	G	.	.	PASS	END=120056899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	120056900	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:69:60
chr1	120056901	.	A	.	.	PASS	END=120056912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	120056913	.	T	.	.	PASS	END=120057034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:86:60
chr1	120057035	.	C	.	.	PASS	END=120057079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	120057080	.	C	.	.	PASS	END=120057125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	120057126	.	T	.	.	PASS	END=120057223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:57
chr1	120057224	.	C	.	.	PASS	END=120057260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:56
chr1	120057261	.	C	.	.	PASS	END=120057270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:56
chr1	120165327	.	C	.	.	LowGQX	END=120165334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165335	.	A	.	.	LowGQX	END=120165337	GT	./.
chr1	120165338	.	T	.	.	LowGQX	END=120165339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165340	.	C	.	.	LowGQX	.	GT	./.
chr1	120165341	.	A	.	.	LowGQX	END=120165350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165351	.	G	.	.	LowGQX	.	GT	./.
chr1	120165352	.	C	.	.	LowGQX	END=120165364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165365	.	G	.	.	LowGQX	.	GT	./.
chr1	120165366	.	T	.	.	LowGQX	END=120165373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165374	.	C	.	.	LowGQX	.	GT	./.
chr1	120165375	.	G	.	.	LowGQX	END=120165377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165378	.	A	.	.	LowGQX	.	GT	./.
chr1	120165379	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165380	.	C	.	.	LowGQX	.	GT	./.
chr1	120165381	.	C	.	.	LowGQX	END=120165383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165384	.	T	.	.	LowGQX	.	GT	./.
chr1	120165385	.	G	.	.	LowGQX	END=120165388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165389	.	C	.	.	LowGQX	END=120165391	GT	./.
chr1	120165392	.	C	.	.	LowGQX	END=120165411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165412	.	G	.	.	LowGQX	.	GT	./.
chr1	120165413	.	T	.	.	LowGQX	END=120165424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165425	.	A	.	.	LowGQX	.	GT	./.
chr1	120165426	.	T	.	.	LowGQX	END=120165439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165440	.	A	.	.	LowGQX	.	GT	./.
chr1	120165441	.	T	.	.	LowGQX	END=120165443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165444	.	G	.	.	LowGQX	END=120165445	GT	./.
chr1	120165446	.	T	.	.	LowGQX	END=120165449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165450	.	A	.	.	LowGQX	.	GT	./.
chr1	120165451	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165452	.	C	.	.	LowGQX	.	GT	./.
chr1	120165453	.	T	.	.	LowGQX	END=120165461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165462	.	A	.	.	LowGQX	.	GT	./.
chr1	120165463	.	G	.	.	LowGQX	END=120165465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165466	.	C	.	.	LowGQX	.	GT	./.
chr1	120165467	.	T	.	.	LowGQX	END=120165468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165469	.	G	.	.	LowGQX	END=120165478	GT	./.
chr1	120165479	.	A	.	.	LowGQX	END=120165508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165509	.	G	.	.	LowGQX	.	GT	./.
chr1	120165510	.	T	.	.	LowGQX	END=120165512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165513	.	G	.	.	LowGQX	.	GT	./.
chr1	120165514	.	C	.	.	LowGQX	END=120165516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165517	.	G	.	.	LowGQX	.	GT	./.
chr1	120165518	.	T	.	.	LowGQX	END=120165521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165522	.	G	.	.	LowGQX	.	GT	./.
chr1	120165523	.	C	.	.	LowGQX	END=120165524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165525	.	T	.	.	LowGQX	END=120165526	GT	./.
chr1	120165527	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165528	.	G	.	.	LowGQX	END=120165530	GT	./.
chr1	120165531	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165532	.	G	.	.	LowGQX	.	GT	./.
chr1	120165533	.	G	.	.	LowGQX	END=120165534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165535	.	G	.	.	LowGQX	END=120165541	GT	./.
chr1	120165542	.	C	.	.	LowGQX	END=120165552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165553	.	C	.	.	LowGQX	END=120165554	GT	./.
chr1	120165555	.	C	.	.	LowGQX	END=120165559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165560	.	T	.	.	LowGQX	END=120165561	GT	./.
chr1	120165562	.	G	.	.	LowGQX	END=120165564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165565	.	A	.	.	LowGQX	.	GT	./.
chr1	120165566	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165567	.	A	.	.	LowGQX	.	GT	./.
chr1	120165568	.	G	.	.	LowGQX	END=120165577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165578	.	T	.	.	LowGQX	END=120165583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	120165584	.	C	.	.	LowGQX	END=120165585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	120165586	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	120165587	.	G	.	.	LowGQX	END=120165591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	120165592	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	120165593	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	120165594	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	120165595	.	G	.	.	LowGQX	END=120165599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	120165600	.	G	.	.	LowGQX	END=120165605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	120165606	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	120165607	.	C	.	.	LowGQX	END=120165610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	120165611	.	A	.	.	LowGQX	END=120165619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	120165620	.	T	.	.	LowGQX	END=120165624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	120165625	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	120165626	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	120165627	.	C	.	.	LowGQX	END=120165651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120165652	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	120165653	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	120165654	.	C	.	.	LowGQX	.	GT	./.
chr1	120165655	.	G	.	.	LowGQX	END=120165657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120165658	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	120165659	.	G	.	.	LowGQX	END=120165661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120165662	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	120165663	.	G	.	.	LowGQX	END=120165671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120165672	.	A	.	.	LowGQX	.	GT	./.
chr1	120165673	.	G	.	.	LowGQX	END=120165710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120165711	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	120165712	.	G	.	.	LowGQX	END=120165719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165720	.	C	.	.	LowGQX	.	GT	./.
chr1	120165721	.	G	.	.	LowGQX	END=120165724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165725	.	C	.	.	LowGQX	END=120165728	GT	./.
chr1	120165729	.	C	.	.	LowGQX	END=120165734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165735	.	A	.	.	LowGQX	.	GT	./.
chr1	120165736	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165737	.	A	.	.	LowGQX	.	GT	./.
chr1	120165738	.	T	.	.	LowGQX	END=120165772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165773	.	T	.	.	LowGQX	.	GT	./.
chr1	120165774	.	T	.	.	LowGQX	END=120165823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120165824	.	T	.	.	LowGQX	END=120165825	GT	./.
chr1	120165826	.	C	.	.	LowGQX	END=120165895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120165896	.	T	.	.	LowGQX	END=120166426	GT	./.
chr1	120166427	.	A	.	.	LowGQX	END=120166437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120166438	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	120166439	.	T	.	.	LowGQX	END=120166441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120166442	.	C	.	.	LowGQX	END=120166443	GT	./.
chr1	120166444	.	G	.	.	LowGQX	END=120166454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120166455	.	C	.	.	LowGQX	END=120166458	GT	./.
chr1	120166459	.	G	.	.	LowGQX	END=120166481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120166482	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	120166483	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120166484	.	C	.	.	LowGQX	.	GT	./.
chr1	120166485	.	G	.	.	LowGQX	END=120166486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120166487	.	T	.	.	LowGQX	END=120166489	GT	./.
chr1	120166490	.	G	.	.	LowGQX	END=120166505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120166506	.	G	.	.	LowGQX	END=120166507	GT	./.
chr1	120166508	.	T	.	.	LowGQX	END=120166509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120166510	.	C	.	.	LowGQX	.	GT	./.
chr1	120166511	.	C	.	.	LowGQX	END=120166531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120166532	.	C	.	.	LowGQX	.	GT	./.
chr1	120166533	.	G	.	.	LowGQX	END=120166538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120166539	.	A	.	.	LowGQX	.	GT	./.
chr1	120166540	.	G	.	.	LowGQX	END=120166563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120166564	.	C	.	.	LowGQX	END=120166566	GT	./.
chr1	120166567	.	C	.	.	LowGQX	END=120166574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120166575	.	C	.	.	LowGQX	END=120166625	GT	./.
chr1	120166626	.	G	.	.	LowGQX	END=120166673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120166674	.	C	A	9.29	LowGQX	BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=3.10;ReadPosRankSum=0.736;SB=-25.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr1	120166675	.	T	.	.	LowGQX	END=120166692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	120166693	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	120166694	.	T	.	.	LowGQX	END=120166739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	120168497	.	C	.	.	LowGQX	END=120168723	GT	./.
chr1	120254595	.	T	.	.	PASS	END=120254605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	120254606	.	C	.	.	PASS	END=120254637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	120254638	.	C	.	.	PASS	END=120254685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	120254686	.	G	.	.	PASS	END=120254819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	120254820	.	A	.	.	PASS	END=120254834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	120263725	.	G	.	.	PASS	END=120263746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	120263747	.	T	.	.	PASS	END=120263840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	120263841	.	G	.	.	PASS	END=120263876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	120263877	.	A	.	.	PASS	END=120263897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	120263898	.	A	.	.	PASS	END=120263905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	120263906	.	T	.	.	PASS	END=120263908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	120263909	.	G	.	.	PASS	END=120263915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	120263916	.	G	.	.	PASS	END=120263919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	120263920	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:39:60
chr1	120263921	.	A	.	.	PASS	END=120263926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	120263927	.	G	.	.	PASS	END=120263931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	120263932	.	T	.	.	PASS	END=120263939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr1	120263940	.	A	.	.	PASS	END=120263947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	120263948	.	A	.	.	PASS	END=120263954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:60
chr1	120263955	.	G	.	.	PASS	END=120263957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	120263958	.	G	.	.	PASS	END=120263959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	120263960	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:42:60
chr1	120263961	.	G	.	.	PASS	END=120263968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	120263969	.	T	.	.	PASS	END=120263971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:36:60
chr1	120263972	.	G	.	.	PASS	END=120263976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	120263977	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:12:60
chr1	120263978	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:24:60
chr1	120263979	.	G	.	.	PASS	END=120263983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	120263984	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	120263985	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:15:60
chr1	120263986	.	G	.	.	PASS	END=120263988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	120263989	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:18:60
chr1	120263990	.	G	.	.	PASS	END=120263995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	120265948	.	G	.	.	PASS	END=120265968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	120265969	.	A	.	.	PASS	END=120266056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	120266057	.	C	.	.	PASS	END=120266109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	120266110	.	A	.	.	PASS	END=120266115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	120267418	.	G	.	.	LowGQX	END=120267421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120267422	.	A	.	.	LowGQX	END=120267615	GT	./.
chr1	120269423	.	G	.	.	PASS	END=120269447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	120269448	.	C	.	.	PASS	END=120269522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	120269523	.	A	.	.	PASS	END=120269597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	120269598	.	C	.	.	PASS	END=120269684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	120269685	.	G	.	.	PASS	END=120269718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	120269719	.	G	.	.	PASS	END=120269745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	120269746	.	T	.	.	PASS	END=120269767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	120269768	.	C	.	.	PASS	END=120269776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	120277206	.	A	.	.	PASS	END=120277208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	120277209	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:75:60
chr1	120277210	.	T	.	.	PASS	END=120277224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	120277225	.	A	.	.	PASS	END=120277247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	120277248	.	T	.	.	PASS	END=120277264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	120277265	.	G	.	.	PASS	END=120277330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	120277331	.	G	.	.	PASS	END=120277374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	120277375	.	T	.	.	PASS	END=120277404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	120277405	.	C	.	.	PASS	END=120277408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	120277409	.	G	.	.	PASS	END=120277445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	120277446	.	T	.	.	PASS	END=120277474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	120277475	.	A	.	.	PASS	END=120277484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	120277485	.	A	.	.	PASS	END=120277489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	120277490	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:48:60
chr1	120277491	.	G	.	.	PASS	END=120277499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	120277500	.	T	.	.	PASS	END=120277505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	120277506	.	T	.	.	PASS	END=120277509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	120277510	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	120277511	.	C	.	.	PASS	END=120277514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	120277515	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:21:60
chr1	120277516	.	A	.	.	PASS	END=120277520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	120277521	.	C	.	.	PASS	END=120277526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	120277527	.	T	.	.	PASS	END=120277535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	120277867	.	C	.	.	PASS	END=120277891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	120277892	.	C	.	.	PASS	END=120277940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	120277941	.	G	.	.	PASS	END=120277964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	120277965	.	G	.	.	PASS	END=120278094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	120278095	.	A	.	.	PASS	END=120278114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	120278115	.	C	.	.	PASS	END=120278117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	120279686	.	G	.	.	PASS	END=120279710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	120279711	.	A	.	.	PASS	END=120279757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	120279758	.	T	.	.	PASS	END=120279825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	120279826	.	C	.	.	PASS	END=120279859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	120279860	.	A	.	.	PASS	END=120279910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:87:60
chr1	120279911	.	T	.	.	PASS	END=120279934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	120279935	.	A	.	.	PASS	END=120279940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	120282958	.	G	.	.	PASS	END=120282987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	120282988	.	C	.	.	PASS	END=120283015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	120283016	.	C	.	.	PASS	END=120283147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	120283148	.	T	.	.	PASS	END=120283171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	120283172	.	A	.	.	PASS	END=120283192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:59
chr1	120284339	.	C	.	.	PASS	END=120284368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	120284369	.	G	.	.	PASS	END=120284389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	120284390	.	G	.	.	PASS	END=120284416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	120284417	.	G	.	.	PASS	END=120284516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	120284517	.	C	.	.	PASS	END=120284529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	120284530	.	T	.	.	PASS	END=120284539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	120284540	.	G	.	.	PASS	END=120284555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	120284556	.	T	.	.	PASS	END=120284571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:83:60
chr1	120285379	.	G	.	.	LowGQX	END=120285396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	120285397	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	120285398	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	120285399	.	G	.	.	PASS	END=120285405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	120285406	.	A	.	.	PASS	END=120285408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	120285409	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:21:60
chr1	120285410	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:39:60
chr1	120285411	.	C	.	.	PASS	END=120285418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	120285419	.	T	.	.	PASS	END=120285432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	120285433	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:66:60
chr1	120285434	.	C	.	.	PASS	END=120285445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	120285446	.	G	.	.	PASS	END=120285476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:82:60
chr1	120285477	.	G	.	.	PASS	END=120285511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	120285512	.	C	.	.	PASS	END=120285531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	120285532	.	G	.	.	PASS	END=120285545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	120285546	.	G	A	1743.03	PASS	BaseQRankSum=-0.101;DP=151;Dels=0.00;FS=2.134;HRun=0;HaplotypeScore=8.5223;MQ=60;MQ0=0;MQRankSum=2.167;QD=11.54;ReadPosRankSum=-0.505;SB=-1160.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:68,81:151:99:1773,0,1595:60:99:0.544
chr1	120285547	.	C	.	.	PASS	END=120285612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	120285613	.	C	.	.	PASS	END=120285675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	120285676	.	G	.	.	PASS	END=120285687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	120285688	.	C	.	.	PASS	END=120285695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:84:60
chr1	120285696	.	T	.	.	PASS	END=120285706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	120285707	.	C	.	.	PASS	END=120285712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	120285713	.	T	.	.	PASS	END=120285714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	120285715	.	G	.	.	PASS	END=120285716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	120285717	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:54:60
chr1	120285718	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:35:0:60
chr1	120286458	.	C	.	.	PASS	END=120286572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	120286573	.	G	.	.	PASS	END=120286714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:258:99:60
chr1	120293374	.	A	.	.	PASS	END=120293394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	120293395	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:56:60
chr1	120293396	.	C	.	.	PASS	END=120293411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	120293412	.	T	.	.	PASS	END=120293418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	120293419	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:60:60
chr1	120293420	.	C	.	.	PASS	END=120293421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	120293422	.	C	.	.	PASS	END=120293441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:91:60
chr1	120293442	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:54:60
chr1	120293443	.	A	.	.	PASS	END=120293487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	120293488	.	A	.	.	PASS	END=120293572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	120293573	.	A	.	.	PASS	END=120293582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	120295121	.	C	.	.	PASS	END=120295131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	120295132	.	A	.	.	PASS	END=120295136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	120295137	.	G	.	.	PASS	END=120295141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	120295142	.	C	.	.	PASS	END=120295196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	120295197	.	G	.	.	PASS	END=120295214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	120295215	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:64:60
chr1	120295216	.	T	.	.	PASS	END=120295263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	120295264	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:76:60
chr1	120295265	.	A	.	.	PASS	END=120295321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	120295322	.	A	.	.	PASS	END=120295344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	120295345	.	A	.	.	PASS	END=120295348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	120295852	.	T	.	.	PASS	END=120295884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	120295885	.	T	.	.	PASS	END=120295898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	120295899	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:45:60
chr1	120295900	.	C	.	.	PASS	END=120295901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	120295902	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:52:60
chr1	120295903	.	C	.	.	PASS	END=120295968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	120295969	.	A	.	.	PASS	END=120295985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	120295986	.	C	.	.	PASS	END=120296017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	120296018	.	A	.	.	PASS	END=120296027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	120296028	.	A	.	.	PASS	END=120296031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr1	120296032	.	A	.	.	PASS	END=120296034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	120296035	.	C	.	26.79	LowGQX	DP=22;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:17:18:1.70:60:2
chr1	120296036	.	A	.	.	PASS	END=120296047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	120296048	.	A	.	.	PASS	END=120296050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:61
chr1	120297999	.	G	.	.	PASS	END=120298001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	120298002	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	120298003	.	A	.	.	PASS	END=120298022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	120298023	.	G	.	.	PASS	END=120298031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	120298032	.	G	.	.	PASS	END=120298039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	120298040	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:9:60
chr1	120298041	.	A	.	.	PASS	END=120298052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	120298053	.	G	.	.	PASS	END=120298070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	120298071	.	C	.	.	PASS	END=120298076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	120298077	.	T	.	.	PASS	END=120298095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	120298096	.	T	.	.	PASS	END=120298191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	120298192	.	T	.	.	PASS	END=120298218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	120298219	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:72:60
chr1	120298220	.	C	.	.	PASS	END=120298229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	120298230	.	A	.	.	PASS	END=120298241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	120298242	.	C	.	.	PASS	END=120298253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	120298254	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:21:60
chr1	120298255	.	C	.	.	PASS	END=120298258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	120298259	.	G	.	.	PASS	END=120298264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	120298265	.	G	.	.	PASS	END=120298271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	120299845	.	C	.	.	PASS	END=120299855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	120299856	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:36:60
chr1	120299857	.	A	.	.	PASS	END=120299866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	120299867	.	C	.	.	PASS	END=120299887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:77:60
chr1	120299888	.	G	.	.	PASS	END=120299944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:82:60
chr1	120299945	.	C	.	.	PASS	END=120299981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	120299982	.	C	.	.	PASS	END=120300029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	120300030	.	A	.	.	PASS	END=120300070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	120300071	.	G	.	.	PASS	END=120300100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	120300101	.	G	.	.	PASS	END=120300103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	120300104	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr1	120300105	.	A	.	.	PASS	END=120300112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:81:60
chr1	120301690	.	C	.	.	PASS	END=120301696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	120301697	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:18:60
chr1	120301698	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:57:60
chr1	120301699	.	A	.	.	PASS	END=120301708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:87:60
chr1	120301709	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:69:60
chr1	120301710	.	G	.	.	PASS	END=120301727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	120301728	.	C	.	.	PASS	END=120301742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	120301743	.	T	.	.	PASS	END=120301778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	120301779	.	G	.	.	PASS	END=120301802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	120301803	.	A	.	.	PASS	END=120301883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	120301884	.	T	.	.	PASS	END=120301914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	120301915	.	C	.	.	PASS	END=120301940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	120301941	.	A	.	.	PASS	END=120301950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	120301951	.	A	.	.	PASS	END=120301956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	120302436	.	A	.	.	PASS	END=120302443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	120302444	.	G	.	.	PASS	END=120302455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	120302456	.	C	.	.	PASS	END=120302509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	120302510	.	T	.	.	PASS	END=120302536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	120302537	.	C	.	.	PASS	END=120302596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	120302597	.	A	.	.	PASS	END=120302651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	120302652	.	A	.	.	PASS	END=120302663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	120306744	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:21:60
chr1	120306745	.	A	.	.	PASS	END=120306750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	120306751	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:34:60
chr1	120306752	.	A	.	.	PASS	END=120306767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	120306768	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:24:60
chr1	120306769	.	T	.	.	PASS	END=120306783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	120306784	.	G	.	.	PASS	END=120306787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	120306788	.	T	.	.	PASS	END=120306803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	120306804	.	A	.	.	PASS	END=120306839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:77:60
chr1	120306840	.	A	.	.	PASS	END=120306854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	120306855	.	A	.	.	PASS	END=120306865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	120306866	.	G	.	.	PASS	END=120306901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	120306902	.	T	.	.	PASS	END=120306987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	120306988	.	G	.	.	PASS	END=120307007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	120307008	.	G	.	.	PASS	END=120307019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	120307020	.	G	.	.	PASS	END=120307052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	120307053	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:72:60
chr1	120307054	.	C	.	.	PASS	END=120307067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	120307068	.	A	.	.	PASS	END=120307083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	120307084	.	C	.	.	PASS	END=120307095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	120307096	.	C	.	.	PASS	END=120307106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	120307107	.	T	.	.	PASS	END=120307120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	120307121	.	T	.	.	PASS	END=120307147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	120307148	.	T	.	.	PASS	END=120307151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	120307152	.	C	.	.	PASS	END=120307153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	120307154	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:45:60
chr1	120307155	.	A	.	.	PASS	END=120307176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	120307177	.	C	.	.	PASS	END=120307198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	120307199	.	T	.	.	PASS	END=120307265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	120307266	.	A	.	.	PASS	END=120307268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	120307269	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:0:60
chr1	120307270	.	A	.	.	PASS	END=120307277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	120307278	.	A	.	.	PASS	END=120307285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	120307286	.	T	.	.	PASS	END=120307300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	120311313	.	G	.	.	PASS	END=120311424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	120311425	.	T	.	.	PASS	END=120311474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	120311475	.	G	.	.	PASS	END=120311505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	120311506	.	C	.	.	PASS	END=120311518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	120336737	.	A	.	.	LowGQX	END=120336764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120336765	.	A	.	.	LowGQX	.	GT	./.
chr1	120336766	.	T	.	.	LowGQX	END=120336811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120336812	.	T	.	.	LowGQX	.	GT	./.
chr1	120336813	.	T	.	.	LowGQX	END=120336822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120336823	.	G	.	.	LowGQX	.	GT	./.
chr1	120336824	.	G	.	.	LowGQX	END=120336836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120337225	.	A	.	.	LowGQX	END=120337324	GT	./.
chr1	120341118	.	A	.	.	LowGQX	END=120341227	GT	./.
chr1	120342346	.	A	.	.	LowGQX	END=120342398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120342399	.	A	.	.	LowGQX	END=120342487	GT	./.
chr1	120345450	.	C	.	.	LowGQX	END=120345790	GT	./.
chr1	120351310	.	C	.	.	LowGQX	END=120351409	GT	./.
chr1	120377386	.	A	.	.	LowGQX	END=120377529	GT	./.
chr1	120378618	.	A	.	.	LowGQX	END=120378677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120378678	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	120378679	.	T	.	.	LowGQX	END=120378728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120378729	.	A	.	.	LowGQX	END=120378833	GT	./.
chr1	120379835	.	T	.	.	LowGQX	END=120379994	GT	./.
chr1	120381805	.	A	.	.	LowGQX	END=120381807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120381808	.	C	.	10.70	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.05:60:0
chr1	120381809	.	A	.	.	LowGQX	END=120381818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120381819	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	120381820	.	T	.	.	LowGQX	END=120381825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120381826	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr1	120381827	.	T	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	120381828	.	C	.	.	LowGQX	END=120381831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	120381832	.	C	.	13.53	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.09:60:0
chr1	120381833	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	120381834	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	120381835	.	T	C	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8832;MQ=60;MQ0=0;MQRankSum=0.727;QD=0.79;ReadPosRankSum=-0.727;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,1:4:30.29:30,0,70:60:3:0.250
chr1	120381836	.	T	.	.	LowGQX	END=120381841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	120381842	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	120381843	.	G	.	.	LowGQX	END=120381852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	120381853	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	120381854	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	120381855	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	120381856	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	120381857	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	120381858	.	C	.	.	LowGQX	END=120381862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	120381863	.	A	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	120381864	.	C	.	.	LowGQX	END=120381867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	120381868	.	A	.	42.03	LowGQX	DP=6;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:6:12.04:60:12
chr1	120381869	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	120381870	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:60
chr1	120381871	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	120381872	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	120381873	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	120381874	.	G	.	.	LowGQX	END=120381890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	120381891	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:6:60
chr1	120381892	.	A	.	.	LowGQX	END=120381893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	120381894	.	A	.	.	LowGQX	END=120381895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:60
chr1	120381896	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	120381897	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	120381898	.	G	.	.	LowGQX	END=120381903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	120381904	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	120381905	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	120381906	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	120381907	.	G	.	.	LowGQX	END=120381910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	120381911	.	T	.	.	LowGQX	END=120381941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	120381942	.	G	.	.	LowGQX	END=120381980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	120381981	.	C	.	.	LowGQX	END=120381988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	120381989	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	120381990	.	C	.	.	LowGQX	END=120382008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	120382009	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	120382010	.	T	.	.	LowGQX	END=120382020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	120382808	.	T	.	.	LowGQX	END=120382966	GT	./.
chr1	120384007	.	A	.	.	LowGQX	END=120384015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	120384016	.	G	.	.	LowGQX	END=120384028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	120384029	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	120384030	.	G	.	.	LowGQX	END=120384045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	120384046	.	A	.	.	LowGQX	END=120384059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	120384060	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	120384061	.	C	.	.	LowGQX	END=120384085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	120384086	.	G	.	.	LowGQX	END=120384108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	120384109	.	G	.	.	LowGQX	END=120384114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	120384115	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	120384116	.	G	.	.	LowGQX	END=120384141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	120384142	.	G	.	.	LowGQX	END=120384150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	120384151	.	T	.	.	LowGQX	END=120384195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	120384196	.	C	.	.	LowGQX	END=120384204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	120384205	.	A	G	171.56	LowGQ;LowGQX	DP=7;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=24.51;SB=-117.70	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,7:7:15.05:204,15,0:60:15:1.000
chr1	120384206	.	A	.	.	LowGQX	END=120384224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	120384225	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	120385054	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	120385055	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	120385056	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:60
chr1	120385057	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:1:60
chr1	120385058	.	G	.	.	PASS	END=120385060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	120385061	.	C	.	.	LowGQX	END=120385062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:60
chr1	120385063	.	C	.	.	PASS	END=120385065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	120385066	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	120385067	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:60
chr1	120385068	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	120385069	.	C	.	.	PASS	END=120385147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	120385148	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:1:60
chr1	120385149	.	T	.	.	PASS	END=120385158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	120385159	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:2:60
chr1	120385160	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	120386922	.	A	.	.	LowGQX	END=120386932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120386933	.	T	.	.	LowGQX	.	GT	./.
chr1	120386934	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120386935	.	T	.	.	LowGQX	.	GT	./.
chr1	120386936	.	G	.	.	LowGQX	END=120386955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120386956	.	G	.	.	LowGQX	.	GT	./.
chr1	120386957	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120386958	.	C	.	.	LowGQX	.	GT	./.
chr1	120386959	.	A	.	.	LowGQX	END=120386980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120386981	.	G	.	.	LowGQX	END=120386982	GT	./.
chr1	120386983	.	T	.	.	LowGQX	END=120386998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120386999	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	120387000	.	T	.	.	LowGQX	END=120387015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120387016	.	A	.	.	LowGQX	.	GT	./.
chr1	120387017	.	G	.	.	LowGQX	END=120387052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120387053	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	120387054	.	C	.	.	LowGQX	END=120387065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120387066	.	C	.	.	LowGQX	.	GT	./.
chr1	120387067	.	T	.	.	LowGQX	END=120387075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120387076	.	C	.	.	LowGQX	.	GT	./.
chr1	120387077	.	A	.	.	LowGQX	END=120387119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120387120	.	G	A	47.39	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=23.69;SB=-38.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:79,6,0:60:6:1.000
chr1	120387121	.	G	.	.	LowGQX	END=120387160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120436585	.	G	.	.	LowGQX	END=120437119	GT	./.
chr1	120437120	.	C	.	.	LowGQX	END=120437123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437124	.	A	.	.	LowGQX	.	GT	./.
chr1	120437125	.	C	.	.	LowGQX	END=120437132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437133	.	G	.	.	LowGQX	.	GT	./.
chr1	120437134	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437135	.	C	.	.	LowGQX	.	GT	./.
chr1	120437136	.	A	.	.	LowGQX	END=120437139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437140	.	T	.	.	LowGQX	.	GT	./.
chr1	120437141	.	T	.	.	LowGQX	END=120437154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437155	.	T	.	.	LowGQX	.	GT	./.
chr1	120437156	.	C	.	.	LowGQX	END=120437170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437171	.	G	.	.	LowGQX	.	GT	./.
chr1	120437172	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437173	.	T	.	.	LowGQX	.	GT	./.
chr1	120437174	.	T	.	.	LowGQX	END=120437193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437194	.	G	.	.	LowGQX	.	GT	./.
chr1	120437195	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437196	.	G	.	.	LowGQX	.	GT	./.
chr1	120437197	.	C	.	.	LowGQX	END=120437198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437199	.	C	.	.	LowGQX	END=120437202	GT	./.
chr1	120437203	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437204	.	A	.	.	LowGQX	END=120437207	GT	./.
chr1	120437208	.	G	.	.	LowGQX	END=120437209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437210	.	G	.	.	LowGQX	END=120437211	GT	./.
chr1	120437212	.	T	.	.	LowGQX	END=120437213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437214	.	T	.	.	LowGQX	.	GT	./.
chr1	120437215	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437216	.	C	.	.	LowGQX	END=120437301	GT	./.
chr1	120437302	.	A	.	.	LowGQX	END=120437308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437309	.	T	.	.	LowGQX	.	GT	./.
chr1	120437310	.	T	.	.	LowGQX	END=120437334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437335	.	C	.	.	LowGQX	END=120437336	GT	./.
chr1	120437337	.	A	.	.	LowGQX	END=120437368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437369	.	C	.	.	LowGQX	.	GT	./.
chr1	120437370	.	A	.	.	LowGQX	END=120437382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437383	.	A	.	.	LowGQX	.	GT	./.
chr1	120437384	.	C	.	.	LowGQX	END=120437392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437393	.	A	.	.	LowGQX	.	GT	./.
chr1	120437394	.	G	.	.	LowGQX	END=120437397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437398	.	T	.	.	LowGQX	.	GT	./.
chr1	120437399	.	C	.	.	LowGQX	END=120437407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	120437408	.	C	.	10.70	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.05:60:0
chr1	120437409	.	C	.	.	LowGQX	END=120437443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120437444	.	G	.	.	LowGQX	END=120437461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	120437462	.	A	.	.	LowGQX	END=120437551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437552	.	A	.	.	LowGQX	.	GT	./.
chr1	120437553	.	G	.	.	LowGQX	END=120437655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437656	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	120437657	.	G	.	.	LowGQX	END=120437693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	120437694	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	120437695	.	T	.	.	LowGQX	END=120437708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	120437709	.	G	.	.	LowGQX	END=120437756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120437757	.	T	.	.	LowGQX	END=120437781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	120437782	.	G	.	.	LowGQX	END=120437886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	120437887	.	C	.	.	LowGQX	END=120437914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120437915	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	120437916	.	A	.	.	LowGQX	END=120437965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437966	.	G	.	.	LowGQX	.	GT	./.
chr1	120437967	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437968	.	G	.	.	LowGQX	.	GT	./.
chr1	120437969	.	C	.	.	LowGQX	END=120437970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437971	.	A	.	.	LowGQX	.	GT	./.
chr1	120437972	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437973	.	G	.	.	LowGQX	END=120437975	GT	./.
chr1	120437976	.	A	.	.	LowGQX	END=120437986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437987	.	G	.	.	LowGQX	.	GT	./.
chr1	120437988	.	T	.	.	LowGQX	END=120437992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437993	.	T	.	.	LowGQX	.	GT	./.
chr1	120437994	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437995	.	C	.	.	LowGQX	.	GT	./.
chr1	120437996	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120437997	.	C	.	.	LowGQX	END=120437998	GT	./.
chr1	120437999	.	C	.	.	LowGQX	END=120438019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120438020	.	A	.	.	LowGQX	.	GT	./.
chr1	120438021	.	A	.	.	LowGQX	END=120438025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120438026	.	C	.	.	LowGQX	.	GT	./.
chr1	120438027	.	T	.	.	LowGQX	END=120438031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120438032	.	C	.	.	LowGQX	.	GT	./.
chr1	120438033	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120438034	.	A	.	.	LowGQX	.	GT	./.
chr1	120438035	.	A	.	.	LowGQX	END=120438081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120438082	.	G	.	.	LowGQX	.	GT	./.
chr1	120438083	.	C	.	.	LowGQX	END=120438086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120438087	.	A	.	.	LowGQX	.	GT	./.
chr1	120438088	.	T	.	.	LowGQX	END=120438095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120438096	.	C	.	.	LowGQX	.	GT	./.
chr1	120438097	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120438098	.	G	.	.	LowGQX	.	GT	./.
chr1	120438099	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120438100	.	C	.	.	LowGQX	.	GT	./.
chr1	120438101	.	G	.	.	LowGQX	END=120438110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120438111	.	T	.	.	LowGQX	.	GT	./.
chr1	120438112	.	A	.	.	LowGQX	END=120438116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120438117	.	T	.	.	LowGQX	.	GT	./.
chr1	120438118	.	T	.	.	LowGQX	END=120438132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120438133	.	A	.	.	LowGQX	END=120438135	GT	./.
chr1	120438136	.	C	.	.	LowGQX	END=120438138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120438139	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	120438140	.	C	.	.	LowGQX	END=120438146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120438147	.	T	.	.	LowGQX	.	GT	./.
chr1	120438148	.	T	.	.	LowGQX	END=120438164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120438165	.	T	.	.	LowGQX	.	GT	./.
chr1	120438166	.	C	.	.	LowGQX	END=120438168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120438169	.	A	.	.	LowGQX	.	GT	./.
chr1	120438170	.	C	.	.	LowGQX	END=120438190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120438191	.	T	.	.	LowGQX	.	GT	./.
chr1	120438192	.	C	.	.	LowGQX	END=120438195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120438196	.	A	.	.	LowGQX	.	GT	./.
chr1	120438197	.	C	.	.	LowGQX	END=120438198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120438199	.	T	.	.	LowGQX	END=120438904	GT	./.
chr1	120438905	.	G	.	.	LowGQX	END=120438961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120457878	.	C	.	.	PASS	END=120457879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	120457880	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	120457881	.	C	.	.	PASS	END=120457891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	120457892	.	A	.	.	LowGQX	END=120457894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	120457895	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	120457896	.	T	.	.	LowGQX	END=120457902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	120457903	.	T	.	.	PASS	END=120457904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	120457905	.	T	.	.	PASS	END=120457914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	120457915	.	G	.	.	PASS	END=120457933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	120457934	.	C	.	.	PASS	END=120457940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	120457941	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:40:60
chr1	120457942	.	T	.	.	PASS	END=120457964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	120457965	.	A	.	.	PASS	END=120457992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	120457993	.	C	.	.	PASS	END=120458023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	120458024	.	T	.	.	PASS	END=120458040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	120458041	.	T	.	.	PASS	END=120458276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	120458277	.	G	.	.	PASS	END=120458330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	120458331	.	G	.	.	PASS	END=120458406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	120458407	.	C	.	.	PASS	END=120458460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	120458461	.	G	.	.	PASS	END=120458515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	120458516	.	C	.	.	PASS	END=120458573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	120458574	.	C	.	.	PASS	END=120458765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	120458766	.	G	.	.	PASS	END=120458794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	120458795	.	A	.	.	PASS	END=120458831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:286:99:60
chr1	120458832	.	T	.	.	PASS	END=120458879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:370:99:60
chr1	120458880	.	T	.	.	PASS	END=120458962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:393:99:60
chr1	120458963	.	C	.	.	PASS	END=120458998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:306:99:60
chr1	120458999	.	G	.	.	PASS	END=120459025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	120459026	.	T	.	.	PASS	END=120459063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	120459064	.	A	.	.	PASS	END=120459087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	120459088	.	C	.	.	PASS	END=120459141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	120459142	.	G	.	.	PASS	END=120459201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	120459202	.	T	.	.	PASS	END=120459260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	120459261	.	G	.	.	PASS	END=120459322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	120459323	.	G	.	.	PASS	END=120459356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	120459357	.	C	.	.	PASS	END=120459368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	120460237	.	A	.	.	PASS	END=120460248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	120460249	.	G	.	.	PASS	END=120460276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	120460277	.	A	.	.	PASS	END=120460299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	120460300	.	C	.	.	PASS	END=120460397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	120460398	.	A	.	.	PASS	END=120460422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	120460423	.	T	.	.	PASS	END=120460434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	120460435	.	A	.	.	PASS	END=120460436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	120460978	.	C	.	.	PASS	END=120460988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	120460989	.	T	.	.	PASS	END=120461021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	120461022	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:87:60
chr1	120461023	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:38:22:60
chr1	120461024	.	C	.	.	PASS	END=120461033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	120461034	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:45:60
chr1	120461035	.	C	.	.	PASS	END=120461070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	120461071	.	G	.	.	PASS	END=120461175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	120461176	.	T	.	.	PASS	END=120461216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	120461217	.	G	.	.	PASS	END=120461227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	120461884	.	T	.	.	PASS	END=120461892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	120461893	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:51:60
chr1	120461894	.	A	.	.	PASS	END=120461920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	120461921	.	C	.	.	PASS	END=120461934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	120461935	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:63:60
chr1	120461936	.	T	.	.	PASS	END=120461967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	120461968	.	A	.	.	PASS	END=120461986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	120461987	.	C	.	.	PASS	END=120462001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	120462002	.	G	.	.	PASS	END=120462094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	120462095	.	T	.	.	PASS	END=120462140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	120462141	.	T	.	.	PASS	END=120462194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	120462195	.	T	.	.	PASS	END=120462219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	120462220	.	C	.	.	PASS	END=120462243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	120462244	.	A	.	.	PASS	END=120462251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	120462252	.	A	.	.	PASS	END=120462287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	120462801	.	A	.	.	PASS	END=120462812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	120462813	.	A	.	.	PASS	END=120462815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chr1	120462816	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:60:60
chr1	120462817	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:12:60
chr1	120462818	.	G	.	.	PASS	END=120462822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	120462823	.	G	.	.	PASS	END=120462836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	120462837	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:42:60
chr1	120462838	.	G	.	.	PASS	END=120462849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	120462850	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:65:60
chr1	120462851	.	C	.	.	PASS	END=120462895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr1	120462896	.	G	.	.	PASS	END=120462935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	120462936	.	T	.	.	PASS	END=120463021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	120463022	.	T	.	.	PASS	END=120463061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	120463062	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:70:54:60
chr1	120463063	.	C	.	.	PASS	END=120463071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	120464285	.	A	.	.	PASS	END=120464332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	120464333	.	C	.	.	PASS	END=120464374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	120464375	.	G	.	.	PASS	END=120464483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	120464808	.	A	.	.	PASS	END=120464816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	120464817	.	T	.	.	PASS	END=120464837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr1	120464838	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:60
chr1	120464839	.	T	.	.	PASS	END=120464852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr1	120464853	.	T	.	.	PASS	END=120464870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:98:60
chr1	120464871	.	G	.	.	PASS	END=120464885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	120464886	.	G	.	.	PASS	END=120464912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	120464913	.	T	.	.	PASS	END=120464948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	120464949	.	G	.	.	PASS	END=120465003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	120465004	.	G	.	.	PASS	END=120465037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	120465038	.	G	.	.	PASS	END=120465057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	120465058	.	T	.	.	PASS	END=120465066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	120465067	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:36:60
chr1	120465068	.	A	.	.	PASS	END=120465103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	120465104	.	A	.	.	PASS	END=120465120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	120465208	.	A	.	.	PASS	END=120465219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	120465220	.	T	.	.	PASS	END=120465237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	120465238	.	C	.	.	PASS	END=120465244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	120465245	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:52:60
chr1	120465246	.	C	.	.	PASS	END=120465270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	120465271	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:75:60
chr1	120465272	.	A	.	.	PASS	END=120465289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	120465290	.	C	.	.	PASS	END=120465295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	120465296	.	T	.	.	PASS	END=120465320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	120465321	.	G	.	.	PASS	END=120465434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	120465435	.	A	.	.	PASS	END=120465445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	120465446	.	A	.	.	PASS	END=120465452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:94:60
chr1	120466209	.	A	.	.	LowGQX	END=120466210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	120466211	.	T	.	.	PASS	END=120466212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	120466213	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	120466214	.	T	.	.	PASS	END=120466215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	120466216	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	120466217	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	120466218	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	120466219	.	T	.	.	PASS	END=120466220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	120466221	.	C	.	.	LowGQX	END=120466225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	120466226	.	A	.	.	PASS	END=120466227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	120466228	.	T	.	.	LowGQX	END=120466232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	120466233	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	120466234	.	T	.	.	LowGQX	END=120466242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	120466243	.	A	.	.	PASS	END=120466245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	120466246	.	A	.	.	LowGQX	END=120466249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	120466250	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	120466251	.	A	.	.	LowGQX	END=120466254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	120466255	.	C	.	.	PASS	END=120466257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	120466258	.	A	.	.	LowGQX	END=120466262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	120466263	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	120466264	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:2:60
chr1	120466265	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	120466266	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	120466267	.	C	.	.	PASS	END=120466297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:60
chr1	120466298	.	G	.	.	PASS	END=120466315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	120466316	.	C	.	.	PASS	END=120466329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	120466330	.	A	.	.	PASS	END=120466342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	120466343	.	A	.	.	PASS	END=120466346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	120466347	.	G	.	.	PASS	END=120466353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	120466354	.	C	.	.	PASS	END=120466364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	120466365	.	C	.	.	PASS	END=120466373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	120466374	.	T	.	.	PASS	END=120466382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	120466383	.	A	.	.	PASS	END=120466390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	120466391	.	G	.	.	PASS	END=120466406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	120466407	.	G	.	.	PASS	END=120466449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	120466450	.	G	.	.	PASS	END=120466522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	120466523	.	C	.	.	PASS	END=120466535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	120466536	.	C	.	.	PASS	END=120466555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	120466556	.	C	.	.	PASS	END=120466566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	120466567	.	A	.	.	PASS	END=120466586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	120466587	.	T	.	.	PASS	END=120466588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	120466589	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:42:60
chr1	120466590	.	G	.	.	PASS	END=120466594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	120466595	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:27:60
chr1	120466596	.	T	.	.	PASS	END=120466603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	120466604	.	A	.	.	PASS	END=120466630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	120466631	.	A	.	.	PASS	END=120466640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	120466641	.	G	.	.	PASS	END=120466642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	120466643	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	120466644	.	C	.	.	PASS	END=120466652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	120466653	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	120466654	.	T	.	.	PASS	END=120466658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	120467877	.	A	.	.	PASS	END=120467896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	120467897	.	C	.	.	PASS	END=120467971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	120467972	.	G	.	.	PASS	END=120467981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	120467982	.	G	.	.	PASS	END=120468009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	120468010	.	T	.	.	PASS	END=120468038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	120468039	.	G	.	.	PASS	END=120468150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	120468151	.	A	.	.	PASS	END=120468173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	120468174	.	G	.	.	PASS	END=120468188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	120468189	.	G	.	.	PASS	END=120468203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	120468204	.	T	.	.	PASS	END=120468249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	120468250	.	A	.	.	PASS	END=120468262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:81:60
chr1	120468263	.	C	.	.	PASS	END=120468275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	120468276	.	C	.	.	PASS	END=120468284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	120468285	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:60:60
chr1	120468286	.	G	.	.	PASS	END=120468287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	120468288	.	T	.	.	PASS	END=120468290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	120468291	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:33:60
chr1	120468292	.	A	.	.	PASS	END=120468303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	120468304	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:24:60
chr1	120468305	.	A	.	.	PASS	END=120468309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	120468310	.	C	.	.	PASS	END=120468316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	120468317	.	G	.	.	PASS	END=120468321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	120468322	.	C	A	12.76	LowGQX;LowQD;SB	BaseQRankSum=1.613;DP=15;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.8073;MQ=60;MQ0=0;MQRankSum=1.783;QD=0.85;ReadPosRankSum=-0.934;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,2:15:42.51:43,0,346:60:13:0.133
chr1	120468323	.	C	.	.	PASS	END=120468330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	120468331	.	T	.	.	LowGQX	END=120468332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	120468333	.	G	.	.	LowGQX	END=120468337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	120468338	.	G	.	54.07	LowGQX	DP=10;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:24.08:60:24
chr1	120468339	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	120468340	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	120468341	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	120468342	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	120468343	.	A	.	.	PASS	END=120468344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	120468345	.	C	.	.	LowGQX	END=120468347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	120468348	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	120468349	.	G	.	51.06	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:21.07:60:21
chr1	120468350	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr1	120468351	.	C	.	.	LowGQX	END=120468357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	120468358	.	C	.	.	LowGQX	END=120468362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	120468363	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	120468364	.	G	.	.	LowGQX	END=120468367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	120468368	.	A	.	.	LowGQX	END=120468371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	120468372	.	T	.	.	LowGQX	END=120468406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	120468407	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	120468408	.	C	.	.	LowGQX	END=120468416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120468417	.	C	.	.	LowGQX	.	GT	./.
chr1	120468418	.	T	.	.	LowGQX	END=120468449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120468450	.	G	.	.	LowGQX	.	GT	./.
chr1	120468451	.	G	.	.	LowGQX	END=120468460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120468461	.	T	.	.	LowGQX	.	GT	./.
chr1	120468462	.	G	.	.	LowGQX	END=120468479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120468480	.	G	.	.	LowGQX	.	GT	./.
chr1	120468481	.	T	.	.	LowGQX	END=120468484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	120469071	.	A	.	.	PASS	END=120469076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	120469077	.	T	C	775.20	PASS	BaseQRankSum=-0.879;DP=67;Dels=0.00;FS=0.937;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=0.259;QD=11.57;ReadPosRankSum=-1.879;SB=-381.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,29:67:99:805,0,1006:60:99:0.433
chr1	120469078	.	G	.	.	PASS	END=120469189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	120469190	.	A	.	.	PASS	END=120469205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	120469206	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:39:60
chr1	120469207	.	A	.	.	PASS	END=120469246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	120469247	.	A	.	.	PASS	END=120469275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	120471548	.	C	.	.	LowGQX	END=120471557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	120471558	.	C	.	.	LowGQX	END=120471572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	120471573	.	G	.	.	PASS	END=120471578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	120471579	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	120471580	.	A	.	.	PASS	END=120471590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	120471591	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:3:60
chr1	120471592	.	T	.	.	PASS	END=120471596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	120471597	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	120471598	.	C	.	.	PASS	END=120471620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	120471621	.	A	.	.	PASS	END=120471633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	120471634	.	T	.	.	PASS	END=120471640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	120471641	.	G	.	.	PASS	END=120471650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	120471651	.	G	.	.	PASS	END=120471676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	120471677	.	G	.	.	PASS	END=120471702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	120471703	.	C	.	.	PASS	END=120471787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	120471788	.	A	.	.	PASS	END=120471804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	120471805	.	C	.	.	PASS	END=120471831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	120471832	.	A	.	.	PASS	END=120471840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	120471841	.	G	.	.	PASS	END=120471863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr1	120471864	.	A	.	.	PASS	END=120471866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	120471867	.	A	.	.	PASS	END=120471876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	120471877	.	T	.	.	PASS	END=120471886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	120478031	.	T	.	.	PASS	END=120478117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	120478118	.	C	.	.	PASS	END=120478150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	120478151	.	C	.	.	PASS	END=120478196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:78:60
chr1	120478197	.	C	.	.	PASS	END=120478220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	120478221	.	G	.	.	PASS	END=120478225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	120478226	.	C	.	.	PASS	END=120478251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	120478252	.	A	.	.	PASS	END=120478260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	120478261	.	T	.	.	PASS	END=120478264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	120478265	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:35:60
chr1	120478266	.	C	.	.	PASS	END=120478278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	120479854	.	T	.	.	PASS	END=120479862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	120479863	.	C	.	.	PASS	END=120479885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	120479886	.	G	.	.	PASS	END=120479908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	120479909	.	C	.	.	PASS	END=120479946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	120479947	.	G	.	.	PASS	END=120480022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	120480023	.	C	.	.	PASS	END=120480056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	120480057	.	C	.	.	PASS	END=120480085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	120480086	.	A	.	.	PASS	END=120480107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	120480108	.	G	.	.	PASS	END=120480124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	120480125	.	A	.	.	PASS	END=120480140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	120480429	.	G	.	.	PASS	END=120480430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr1	120480431	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:36:60
chr1	120480432	.	C	.	.	PASS	END=120480435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	120480436	.	C	.	.	PASS	END=120480439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	120480440	.	A	.	.	PASS	END=120480452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	120480453	.	A	.	.	PASS	END=120480454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:60:60
chr1	120480455	.	C	.	.	PASS	END=120480471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	120480472	.	A	.	.	PASS	END=120480491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	120480492	.	C	.	.	PASS	END=120480509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	120480510	.	C	.	.	PASS	END=120480607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	120480608	.	G	.	.	PASS	END=120480632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	120480633	.	T	.	.	PASS	END=120480658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	120480659	.	A	.	.	PASS	END=120480684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	120483127	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:54:60
chr1	120483128	.	A	.	.	PASS	END=120483137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	120483138	.	G	.	.	PASS	END=120483141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	120483142	.	T	.	.	PASS	END=120483178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:85:60
chr1	120483179	.	T	.	.	PASS	END=120483193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	120483194	.	G	.	.	PASS	END=120483224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	120483225	.	T	.	.	PASS	END=120483263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	120483264	.	G	.	.	PASS	END=120483370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	120483371	.	A	.	.	PASS	END=120483405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	120483406	.	C	.	.	PASS	END=120483417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	120483418	.	T	.	.	PASS	END=120483426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	120483427	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:72:60
chr1	120483428	.	T	.	.	PASS	END=120483430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	120484098	.	T	.	.	PASS	END=120484104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	120484105	.	C	.	.	PASS	END=120484121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	120484122	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:42:60
chr1	120484123	.	T	.	.	PASS	END=120484141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	120484142	.	T	.	.	PASS	END=120484161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:81:60
chr1	120484162	.	C	.	.	PASS	END=120484230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	120484231	.	A	.	.	PASS	END=120484252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	120484253	.	C	.	.	PASS	END=120484338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	120484339	.	T	.	.	PASS	END=120484367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	120484368	.	T	.	.	PASS	END=120484383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	120484384	.	C	.	.	PASS	END=120484401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	120484402	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:57:60
chr1	120484403	.	C	.	.	PASS	END=120484412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	120484413	.	T	.	.	PASS	END=120484428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	120490986	.	C	.	.	PASS	END=120491001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	120491002	.	C	.	.	PASS	END=120491011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	120491012	.	C	.	.	PASS	END=120491031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	120491032	.	C	.	.	PASS	END=120491060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	120491061	.	C	.	.	PASS	END=120491174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	120491175	.	T	.	.	PASS	END=120491190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	120491191	.	T	.	.	PASS	END=120491211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	120491212	.	T	.	.	PASS	END=120491227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	120491228	.	A	.	.	PASS	END=120491240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	120491579	.	T	.	.	PASS	END=120491599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	120491600	.	T	.	.	PASS	END=120491619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	120491620	.	A	.	.	PASS	END=120491717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	120491718	.	A	.	.	PASS	END=120491750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	120491751	.	T	.	.	PASS	END=120491785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	120491786	.	A	.	.	PASS	END=120491800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	120493116	.	T	.	.	LowGQX	END=120493135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120493136	.	G	.	10.70	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.05:60:0
chr1	120493137	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	120493138	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	120493139	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	120493140	.	G	.	.	LowGQX	END=120493143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120493144	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	120493145	.	T	.	.	LowGQX	END=120493146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	120493147	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	120493148	.	C	.	.	LowGQX	END=120493151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120493152	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	120493153	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	120493154	.	A	.	.	LowGQX	END=120493156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120493157	.	A	.	.	LowGQX	.	GT	./.
chr1	120493158	.	C	.	.	LowGQX	END=120493162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120493163	.	A	.	.	LowGQX	.	GT	./.
chr1	120493164	.	T	.	.	LowGQX	END=120493165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120493166	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	120493167	.	T	.	.	LowGQX	END=120493178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	120493179	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	120493180	.	T	.	.	LowGQX	END=120493183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	120493184	.	T	.	.	LowGQX	END=120493197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	120493198	.	G	.	.	LowGQX	END=120493202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	120493203	.	A	.	.	LowGQX	END=120493207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	120493208	.	G	.	.	LowGQX	END=120493215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	120493216	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	120493217	.	G	.	16.44	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.18:60:0
chr1	120493218	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr1	120493219	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	120493220	.	A	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	120493221	.	G	.	.	LowGQX	END=120493223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	120493224	.	C	.	.	LowGQX	END=120493225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	120493226	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	120493227	.	C	.	.	PASS	END=120493237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	120493238	.	G	.	.	PASS	END=120493260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	120493261	.	C	.	.	PASS	END=120493262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	120493263	.	A	.	.	PASS	END=120493265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	120493266	.	G	.	.	PASS	END=120493271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	120493272	.	G	.	.	PASS	END=120493279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	120493280	.	G	.	.	PASS	END=120493298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	120493299	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:35:60
chr1	120493300	.	A	.	.	PASS	END=120493314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	120493315	.	C	.	.	PASS	END=120493333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:66:60
chr1	120493334	.	C	.	.	PASS	END=120493353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	120493354	.	T	.	.	PASS	END=120493400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	120493401	.	T	.	.	PASS	END=120493499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	120493500	.	C	.	.	PASS	END=120493511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	120496115	.	A	.	.	PASS	END=120496123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	120496124	.	A	.	.	PASS	END=120496127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	120496128	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:36:60
chr1	120496129	.	A	.	.	PASS	END=120496147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	120496148	.	A	.	.	PASS	END=120496174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	120496175	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:52:60
chr1	120496176	.	C	.	.	PASS	END=120496197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	120496198	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:75:60
chr1	120496199	.	C	.	.	PASS	END=120496270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	120496271	.	A	.	.	PASS	END=120496285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	120496286	.	A	.	.	PASS	END=120496302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	120496303	.	C	.	.	PASS	END=120496347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	120496348	.	A	.	.	PASS	END=120496352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	120496353	.	T	.	.	PASS	END=120496362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	120497612	.	A	.	.	LowGQX	END=120497614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	120497615	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:39:60
chr1	120497616	.	G	.	.	PASS	END=120497638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	120497639	.	C	.	.	PASS	END=120497659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr1	120497660	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:69:60
chr1	120497661	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:48:60
chr1	120497662	.	C	.	.	PASS	END=120497667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	120497668	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:39:60
chr1	120497669	.	A	.	.	PASS	END=120497670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	120497671	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:38:60
chr1	120497672	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:78:60
chr1	120497673	.	C	.	.	PASS	END=120497674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:45:60
chr1	120497675	.	C	.	.	PASS	END=120497705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	120497706	.	T	.	.	PASS	END=120497719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	120497720	.	A	.	.	PASS	END=120497785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	120497786	.	T	.	.	PASS	END=120497853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	120497854	.	C	.	.	PASS	END=120497866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	120497867	.	G	.	.	PASS	END=120497871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	120497872	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:46:60
chr1	120497873	.	A	.	.	PASS	END=120497893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	120497894	.	G	.	.	PASS	END=120497906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:60:60
chr1	120501964	.	T	.	.	PASS	END=120501995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	120501996	.	G	.	.	PASS	END=120502042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	120502043	.	G	.	.	PASS	END=120502097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	120502098	.	T	.	.	PASS	END=120502121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr1	120502122	.	A	.	.	PASS	END=120502176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr1	120506146	.	A	.	.	PASS	END=120506163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	120506164	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr1	120506165	.	C	.	.	PASS	END=120506174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	120506175	.	A	.	.	PASS	END=120506184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	120506185	.	G	.	.	PASS	END=120506195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	120506196	.	C	.	.	PASS	END=120506213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	120506214	.	C	.	.	PASS	END=120506243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	120506244	.	A	.	.	PASS	END=120506363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	120506364	.	T	.	.	PASS	END=120506417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	120506418	.	A	.	.	PASS	END=120506448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	120506449	.	C	.	.	PASS	END=120506454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	120506455	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:64:60
chr1	120506456	.	T	.	.	PASS	END=120506471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	120506472	.	A	.	.	PASS	END=120506478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	120506479	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:54:60
chr1	120506480	.	C	.	.	PASS	END=120506481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr1	120508025	.	A	.	.	PASS	END=120508062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	120508063	.	A	.	.	PASS	END=120508090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	120508091	.	A	.	.	PASS	END=120508212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	120508213	.	T	.	.	PASS	END=120508240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	120508948	.	C	.	.	PASS	END=120508993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:79:60
chr1	120508994	.	C	.	.	PASS	END=120508998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	120508999	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:75:69:60
chr1	120509000	.	A	.	.	PASS	END=120509045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	120509046	.	C	.	.	PASS	END=120509135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	120509136	.	T	.	.	PASS	END=120509163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	120510005	.	T	.	.	PASS	END=120510021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	120510022	.	T	.	.	PASS	END=120510056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	120510057	.	T	.	.	PASS	END=120510100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	120510101	.	T	.	.	PASS	END=120510153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	120510154	.	C	.	.	PASS	END=120510178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	120510179	.	A	.	.	PASS	END=120510217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	120510218	.	C	.	.	PASS	END=120510243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	120510244	.	G	.	.	PASS	END=120510266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	120510267	.	A	.	.	PASS	END=120510295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	120510649	.	T	.	.	PASS	END=120510772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	120510773	.	C	.	.	PASS	END=120510797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	120510798	.	A	.	.	PASS	END=120510809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	120510810	.	T	.	.	PASS	END=120510835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	120510836	.	A	.	.	PASS	END=120510838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	120510839	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:33:27:60
chr1	120510840	.	A	.	.	PASS	END=120510853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	120510854	.	A	.	.	PASS	END=120510864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	120510865	.	G	.	.	PASS	END=120510866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr1	120510867	.	T	.	.	PASS	END=120510872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	120510873	.	A	.	.	PASS	END=120510878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	120510879	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	120510880	.	A	.	.	PASS	END=120510884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	120510885	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	120510886	.	G	.	.	PASS	END=120510889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	120510890	.	A	.	.	LowGQX	END=120510892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	120510893	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	120510894	.	G	.	.	LowGQX	END=120510896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	120510897	.	T	.	.	PASS	END=120510901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	120510902	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	120510903	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	120510904	.	T	.	.	LowGQX	END=120510905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	120510906	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	120512083	.	G	.	.	PASS	END=120512103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	120512104	.	T	C	998.79	PASS	DP=31;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=2.8408;MQ=60;MQ0=0;QD=32.22;SB=-210.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,31:31:81.25:1032,81,0:60:81:1.000
chr1	120512105	.	G	.	.	PASS	END=120512107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	120512108	.	T	.	.	PASS	END=120512112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	120512113	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:60:60
chr1	120512114	.	T	.	.	PASS	END=120512117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	120512118	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:66:60
chr1	120512119	.	C	.	.	PASS	END=120512130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	120512131	.	T	.	.	PASS	END=120512156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr1	120512157	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:61:60
chr1	120512158	.	A	.	.	PASS	END=120512197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	120512198	.	A	.	.	PASS	END=120512213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	120512214	.	G	.	.	PASS	END=120512346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:97:60
chr1	120512347	.	C	.	.	PASS	END=120512363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:84:60
chr1	120512364	.	T	.	.	PASS	END=120512397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	120512398	.	C	.	.	PASS	END=120512399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	120512400	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:33:60
chr1	120512401	.	T	.	.	PASS	END=120512405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	120512406	.	T	.	.	PASS	END=120512418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	120529532	.	C	.	.	PASS	END=120529552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	120529553	.	A	.	.	PASS	END=120529565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	120529566	.	C	.	.	PASS	END=120529574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	120529575	.	G	.	.	PASS	END=120529614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	120529615	.	G	.	.	PASS	END=120529643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	120529644	.	A	.	.	PASS	END=120529723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	120529724	.	A	.	.	PASS	END=120529741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	120529742	.	C	.	.	PASS	END=120529756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	120534045	.	A	.	.	LowGQX	END=120534144	GT	./.
chr1	120534194	.	A	.	.	LowGQX	END=120534293	GT	./.
chr1	120539279	.	T	.	.	LowGQX	END=120539474	GT	./.
chr1	120539569	.	C	.	.	LowGQX	END=120539591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:54
chr1	120539592	.	A	.	.	LowGQX	END=120539593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:53
chr1	120539594	.	T	.	.	LowGQX	END=120539605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:55
chr1	120539606	.	A	.	.	LowGQX	END=120539608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:56
chr1	120539609	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:56
chr1	120539610	.	A	.	.	LowGQX	END=120539611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:56
chr1	120539612	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:57
chr1	120539613	.	T	.	.	LowGQX	END=120539624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:57
chr1	120539625	.	A	.	.	PASS	END=120539627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:57
chr1	120539628	.	C	.	.	LowGQX	END=120539629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:57
chr1	120539630	.	G	.	.	PASS	END=120539633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:57
chr1	120539634	.	C	.	.	LowGQX	END=120539635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:57
chr1	120539636	.	C	.	.	PASS	END=120539658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:57
chr1	120539659	.	G	.	.	PASS	END=120539673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:57
chr1	120539674	.	C	.	.	PASS	END=120539687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:58
chr1	120539688	.	G	.	.	PASS	END=120539694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:57
chr1	120539695	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:18:57
chr1	120539696	.	A	.	.	PASS	END=120539705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:57
chr1	120539706	.	T	.	.	PASS	END=120539711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:58
chr1	120539712	.	C	.	.	PASS	END=120539715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:58
chr1	120539716	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:59
chr1	120539717	.	A	.	.	PASS	END=120539744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:58
chr1	120539745	.	C	.	.	PASS	END=120539754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:79:55
chr1	120539755	.	G	.	.	PASS	END=120539799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:53
chr1	120539800	.	G	.	.	PASS	END=120539895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:52
chr1	120539896	.	A	.	.	PASS	END=120539912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:88:53
chr1	120539913	.	C	.	.	PASS	END=120539938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:54
chr1	120539939	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:66:55
chr1	120539940	.	C	.	.	PASS	END=120539950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:53
chr1	120539951	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:51:53
chr1	120539952	.	T	.	.	PASS	END=120539983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:49
chr1	120539984	.	T	.	.	PASS	END=120540004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:47
chr1	120540005	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:54:47
chr1	120540006	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:24:47
chr1	120547901	.	A	.	.	PASS	END=120547914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:47
chr1	120547915	.	A	.	.	PASS	END=120547939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:50
chr1	120547940	.	C	.	.	PASS	END=120547971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:53
chr1	120547972	.	G	.	.	PASS	END=120547976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:55
chr1	120547977	.	C	.	.	PASS	END=120548015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:56
chr1	120548016	.	A	.	.	PASS	END=120548058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:53
chr1	120548059	.	T	.	.	PASS	END=120548117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:41
chr1	120548118	.	G	.	.	PASS	END=120548144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:31
chr1	120548145	.	C	.	.	PASS	END=120548187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:24
chr1	120548188	.	T	.	.	PASS	END=120548220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:21
chr1	120548221	.	A	.	.	PASS	END=120548257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:90:20
chr1	120548258	.	A	.	.	LowMQ	END=120548262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:87:19
chr1	120572478	.	C	.	.	LowMQ	END=120572505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:260:51:10
chr1	120572506	.	A	.	.	LowMQ	END=120572532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:266:54:10
chr1	120572533	.	A	.	.	LowMQ	END=120572540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:250:60:10
chr1	120572541	.	G	.	.	LowMQ	END=120572542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:249:48:10
chr1	120572543	.	G	.	.	LowMQ	END=120572546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:51:10
chr1	120572547	.	T	C	169.19	LowMQ;LowQD	BaseQRankSum=-2.082;DP=238;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7346;MQ=11;MQ0=216;MQRankSum=-0.375;QD=0.71;ReadPosRankSum=0.785;SB=-77.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:188,50:238:99:199,0,427:11:99:0.210
chr1	120572548	.	T	.	.	LowMQ	END=120572552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:51:11
chr1	120572553	.	T	.	.	LowMQ	END=120572554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:45:10
chr1	120572555	.	G	.	.	LowMQ	END=120572558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:48:10
chr1	120572559	.	A	.	.	LowMQ	END=120572571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:42:10
chr1	120572572	.	C	T	30.33	LowMQ;LowQD;SB	BaseQRankSum=-1.212;DP=191;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.9469;MQ=10;MQ0=174;MQRankSum=-1.528;QD=0.16;ReadPosRankSum=1.107;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:172,17:191:60.32:60,0,329:10:30:0.090
chr1	120572573	.	A	.	.	LowMQ	END=120572577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:39:10
chr1	120572578	.	C	.	.	LowMQ	END=120572581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:42:10
chr1	120572582	.	G	.	.	LowMQ	END=120572592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:39:11
chr1	120572593	.	C	.	.	LowMQ	END=120572602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:33:11
chr1	120572603	.	C	.	.	LowMQ	END=120572611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:30:11
chr1	120572612	.	T	.	66.09	LowMQ	DP=96;MQ=12;MQ0=83	GT:AD:DP:GQ:MQ:GQX	0/0:75:96:36.10:12:36
chr1	120572613	.	A	.	.	LowMQ	END=120572616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:33:12
chr1	120572617	.	A	.	.	LowMQ	END=120572624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:36:14
chr1	120572625	.	A	.	.	LowMQ	END=120572629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:39:14
chr1	120572630	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:87:6:14
chr1	120572631	.	A	.	.	LowMQ	END=120572647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:39:14
chr1	120572648	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:82:11:15
chr1	120572649	.	T	.	.	LowMQ	END=120572650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:42:15
chr1	120572651	.	A	.	.	LowMQ	END=120572652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:36:15
chr1	120572653	.	C	.	.	LowMQ	END=120572661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:42:15
chr1	120611396	.	G	.	.	LowGQX	END=120611448	GT	./.
chr1	120611449	.	C	.	.	LowGQX;LowMQ	END=120611452	GT	./.
chr1	120611453	.	C	.	.	LowGQX	END=120611456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:33
chr1	120611457	.	C	.	.	LowGQX	.	GT	./.
chr1	120611458	.	C	.	.	LowGQX	END=120611480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:33
chr1	120611481	.	C	.	.	LowGQX	.	GT	./.
chr1	120611482	.	G	.	.	LowGQX	END=120611494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:33
chr1	120611495	.	A	.	.	LowGQX	.	GT	./.
chr1	120611496	.	C	.	36.01	LowGQX	DP=3;MQ=42;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:42:6
chr1	120611497	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:42
chr1	120611498	.	G	.	33	LowGQX	DP=3;MQ=42;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:42:3
chr1	120611499	.	T	.	.	LowGQX	END=120611504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:42
chr1	120611505	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:43
chr1	120611506	.	C	.	36.01	LowGQX	DP=4;MQ=43;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:43:6
chr1	120611507	.	G	.	.	LowGQX	END=120611552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:43
chr1	120611553	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:43
chr1	120611554	.	T	C	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=43;MQ0=0;MQRankSum=0.727;QD=0.79;ReadPosRankSum=0.727;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,1:4:30.29:30,0,59:43:3:0.250
chr1	120611555	.	T	G	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=43;MQ0=0;MQRankSum=0.727;QD=0.79;ReadPosRankSum=0.727;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,1:4:30.29:30,0,63:43:3:0.250
chr1	120611556	.	C	.	.	LowGQX	END=120611564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:42
chr1	120611565	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:42
chr1	120611566	.	G	.	.	LowGQX	END=120611568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:42
chr1	120611569	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:42
chr1	120611570	.	C	.	.	LowGQX	END=120611571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:42
chr1	120611572	.	C	.	.	LowGQX	END=120611574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:42
chr1	120611575	.	A	.	.	LowGQX	END=120611577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:42
chr1	120611578	.	C	.	.	LowGQX	END=120611579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:42
chr1	120611580	.	C	.	.	LowGQX	END=120611581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:42
chr1	120611582	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:42
chr1	120611583	.	C	.	.	LowGQX	END=120611584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:42
chr1	120611585	.	T	.	.	LowGQX	END=120611586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:42
chr1	120611587	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:42
chr1	120611588	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:42
chr1	120611589	.	C	.	.	LowGQX	END=120611590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:42
chr1	120611591	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:42
chr1	120611592	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:42
chr1	120611593	.	C	.	.	LowGQX	END=120611594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:42
chr1	120611595	.	C	.	.	LowGQX	END=120611596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:42
chr1	120611597	.	C	.	.	LowGQX	END=120611598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:42
chr1	120611599	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:6:47
chr1	120611600	.	C	.	.	LowGQX	END=120611602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:49
chr1	120611603	.	C	.	.	LowGQX	END=120611604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:49
chr1	120611605	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:49
chr1	120611606	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:49
chr1	120611607	.	A	.	.	LowGQX	END=120611609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:49
chr1	120611610	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:49
chr1	120611611	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:49
chr1	120611612	.	C	.	.	LowGQX	END=120611614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:49
chr1	120611615	.	A	.	.	LowGQX	END=120611616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:49
chr1	120611617	.	C	.	.	LowGQX	END=120611620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:49
chr1	120611621	.	A	.	39.02	LowGQX	DP=7;MQ=49;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:7:9.03:49:9
chr1	120611622	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:49
chr1	120611623	.	G	.	.	LowGQX	END=120611624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:49
chr1	120611625	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:49
chr1	120611626	.	C	.	.	LowGQX	END=120611627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:49
chr1	120611628	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:49
chr1	120611629	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:49
chr1	120611630	.	A	.	.	LowGQX	END=120611633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:49
chr1	120611634	.	C	.	.	LowGQX	END=120611635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:49
chr1	120611636	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:49
chr1	120611637	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:49
chr1	120611638	.	C	.	.	LowGQX	END=120611640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:48
chr1	120611641	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:2:51
chr1	120611642	.	C	.	.	LowGQX	END=120611646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:51
chr1	120611647	.	A	.	45.04	LowGQX	DP=9;MQ=51;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:15.05:51:15
chr1	120611648	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:51
chr1	120611649	.	C	.	.	LowGQX	END=120611650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:51
chr1	120611651	.	T	.	.	LowGQX	END=120611652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:51
chr1	120611653	.	G	.	.	LowGQX	END=120611655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:51
chr1	120611656	.	C	.	.	LowGQX	END=120611659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:52
chr1	120611660	.	G	.	.	LowGQX	END=120611666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:52
chr1	120611667	.	G	.	.	LowGQX	END=120611669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:52
chr1	120611670	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:52
chr1	120611671	.	T	.	.	LowGQX	END=120611675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:52
chr1	120611676	.	A	.	.	LowGQX	END=120611677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:52
chr1	120611678	.	A	.	.	LowGQX	END=120611679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:52
chr1	120611680	.	T	.	.	LowGQX	END=120611683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:52
chr1	120611684	.	T	.	.	LowGQX	END=120611686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:52
chr1	120611687	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:52
chr1	120611688	.	G	.	.	LowGQX	END=120611689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:52
chr1	120611690	.	C	.	.	LowGQX	END=120611691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:53
chr1	120611692	.	T	.	.	LowGQX	END=120611708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:53
chr1	120611709	.	G	.	.	LowGQX	END=120611710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:56
chr1	120611711	.	G	.	.	LowGQX	END=120611714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:57
chr1	120611715	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:57
chr1	120611716	.	A	.	.	LowGQX	END=120611719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:57
chr1	120611720	.	G	.	.	PASS	END=120611723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:58
chr1	120611724	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:58
chr1	120611725	.	G	.	.	PASS	END=120611727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:58
chr1	120611728	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:2:58
chr1	120611729	.	C	.	.	PASS	END=120611732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:58
chr1	120611733	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:58
chr1	120611734	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:58
chr1	120611735	.	G	.	.	LowGQX	END=120611736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:58
chr1	120611737	.	G	.	.	PASS	END=120611738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:58
chr1	120611739	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:58
chr1	120611740	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:58
chr1	120611741	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:58
chr1	120611742	.	G	.	.	PASS	END=120611747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:57
chr1	120611748	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:57
chr1	120611749	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:57
chr1	120611750	.	G	.	.	LowGQX	END=120611752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:58
chr1	120611753	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:58
chr1	120611754	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:27:58
chr1	120611755	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:58
chr1	120611756	.	C	.	.	LowGQX	END=120611757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:58
chr1	120611758	.	G	A	21.58	LowGQX;SB	BaseQRankSum=0.762;DP=9;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=58;MQ0=0;MQRankSum=-1.179;QD=2.40;ReadPosRankSum=-0.762;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:7,2:9:51.54:52,0,237:58:22:0.222
chr1	120611759	.	G	.	.	LowGQX	END=120611770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:53
chr1	120611771	.	G	.	.	PASS	END=120611772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:52
chr1	120611773	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:53
chr1	120611774	.	C	.	.	PASS	END=120611775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:52
chr1	120611776	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:52
chr1	120611777	.	C	.	.	PASS	END=120611785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:52
chr1	120611786	.	C	.	.	PASS	END=120611787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:51
chr1	120611788	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:13:51
chr1	120611789	.	C	.	.	PASS	END=120611790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:50
chr1	120611791	.	G	.	.	LowGQX	END=120611792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:50
chr1	120611793	.	C	.	.	PASS	END=120611794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:50
chr1	120611795	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:50
chr1	120611796	.	T	.	.	PASS	END=120611799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:49
chr1	120611800	.	C	.	.	PASS	END=120611802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:49
chr1	120611803	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:30:49
chr1	120611804	.	C	.	.	PASS	END=120611812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:48
chr1	120611813	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:48
chr1	120611814	.	C	.	.	PASS	END=120611818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:48
chr1	120611819	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:21:48
chr1	120611820	.	G	.	.	PASS	END=120611824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:48
chr1	120611825	.	G	.	.	PASS	END=120611829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:47
chr1	120611830	.	G	A	138.56	PASS	BaseQRankSum=1.980;DP=31;Dels=0.00;FS=2.560;HRun=0;HaplotypeScore=0.9992;MQ=47;MQ0=0;MQRankSum=-0.500;QD=4.47;ReadPosRankSum=-1.110;SB=-66.60	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:22,9:31:99:169,0,680:47:99:0.290
chr1	120611831	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:42:47
chr1	120611832	.	T	.	.	PASS	END=120611850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:46
chr1	120611851	.	C	.	.	PASS	END=120611868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:44
chr1	120611869	.	G	.	.	PASS	END=120611875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:44
chr1	120611876	.	C	T	280.60	PASS	BaseQRankSum=1.744;DP=45;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=44;MQ0=1;MQRankSum=-1.720;QD=6.24;ReadPosRankSum=-0.744;SB=-120.99	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:29,16:45:99:311,0,688:44:99:0.356
chr1	120611877	.	G	.	.	PASS	END=120611913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:44
chr1	120611914	.	C	.	.	PASS	END=120611934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:84:48
chr1	120611935	.	G	.	.	PASS	END=120611963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:52
chr1	120611964	.	G	C	652.58	PASS	BaseQRankSum=0.313;DP=95;Dels=0.00;FS=2.957;HRun=1;HaplotypeScore=11.6585;MQ=54;MQ0=1;MQRankSum=-1.455;QD=6.87;ReadPosRankSum=-0.031;SB=-370.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:60,35:95:99:683,0,1437:54:99:0.368
chr1	120611965	.	C	.	.	PASS	END=120612005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:53
chr1	120612006	.	G	A	753.40	PASS	BaseQRankSum=-0.162;DP=109;Dels=0.00;FS=0.900;HRun=0;HaplotypeScore=59.5706;MQ=55;MQ0=0;MQRankSum=-1.099;QD=6.91;ReadPosRankSum=-0.932;SB=-459.16	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,40:109:99:783,0,953:55:99:0.488
chr1	120612007	.	C	.	.	PASS	END=120612033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:55
chr1	120612034	.	T	G	86.48	LowQD	BaseQRankSum=0.524;DP=99;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=62.2918;MQ=55;MQ0=0;MQRankSum=-5.488;QD=0.87;ReadPosRankSum=0.079;SB=-89.53	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:82,17:99:99:116,0,1816:55:86:0.172
chr1	120612035	.	C	.	.	PASS	END=120612040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:55
chr1	120612040	.	T	TCCTCCTCCG	3763.76	PASS	BaseQRankSum=4.870;DP=97;FS=0.810;HRun=0;HaplotypeScore=575.6364;MQ=55;MQ0=0;MQRankSum=-5.535;QD=38.80;ReadPosRankSum=-0.053;SB=-1466.17	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:53,27:94:99:3764,0,5281:55:99:0.338
chr1	120612041	.	C	.	.	PASS	END=120612075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:53
chr1	120612076	.	G	.	.	PASS	END=120612085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:53
chr1	120612086	.	T	.	.	PASS	END=120612087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:96:52
chr1	120612088	.	C	.	.	PASS	END=120612089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:72:52
chr1	120612090	.	G	.	.	PASS	END=120612097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:51
chr1	120839811	.	C	.	.	LowGQX	END=120839982	GT	./.
chr1	120839983	.	C	.	.	LowGQX;LowMQ	END=120839987	GT	./.
chr1	120841912	.	T	.	.	LowGQX;LowMQ	END=120842020	GT	./.
chr1	120842021	.	T	.	.	LowGQX	END=120842063	GT	./.
chr1	120845993	.	A	.	.	LowGQX	END=120846097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:48
chr1	120846098	.	A	.	.	LowGQX	END=120846161	GT	./.
chr1	120854490	.	A	.	.	LowGQX	END=120854589	GT	./.
chr1	120927135	.	T	.	.	PASS	END=120927158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:32
chr1	120927159	.	T	.	.	PASS	END=120927199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:307:99:28
chr1	120927200	.	C	.	.	PASS	END=120927255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:369:99:22
chr1	120927256	.	T	.	.	PASS	END=120927323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:304:99:21
chr1	120927324	.	A	.	.	PASS	END=120927350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:22
chr1	120927351	.	A	.	.	PASS	END=120927413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:21
chr1	120927414	.	A	.	.	PASS	END=120927422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:25
chr1	120928502	.	G	.	.	PASS	END=120928551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:272:99:49
chr1	120928552	.	A	.	.	PASS	END=120928588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:49
chr1	120928589	.	C	.	.	PASS	END=120928613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:50
chr1	120928614	.	C	.	.	PASS	END=120928615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:51
chr1	120930022	.	C	.	.	LowGQX	END=120930024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:57
chr1	120930025	.	T	.	.	PASS	END=120930048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:58
chr1	120930049	.	G	.	.	PASS	END=120930067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:55
chr1	120930068	.	G	.	.	PASS	END=120930089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:51
chr1	120930090	.	T	.	.	PASS	END=120930113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:46
chr1	120930114	.	T	.	.	PASS	END=120930137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:45
chr1	120930138	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:45
chr1	120930139	.	G	.	.	PASS	END=120930157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:45
chr1	120930158	.	T	.	.	PASS	END=120930160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:44
chr1	120930161	.	A	.	.	PASS	END=120930174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:39
chr1	120930175	.	T	.	.	PASS	END=120930200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:38
chr1	120930201	.	T	.	.	PASS	END=120930224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:38
chr1	120930225	.	C	.	.	PASS	END=120930240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:39
chr1	120930241	.	C	.	.	PASS	END=120930267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:40
chr1	120930268	.	G	.	.	PASS	END=120930295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:40
chr1	120934371	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:27:40
chr1	120934372	.	C	.	.	PASS	END=120934373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:30:38
chr1	120934374	.	T	.	.	LowGQX	END=120934375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:27:35
chr1	120934376	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:30:35
chr1	120934377	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:27:35
chr1	120934378	.	T	.	.	PASS	END=120934379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:30:35
chr1	120934380	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:18:35
chr1	120934381	.	C	.	.	PASS	END=120934383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:30:35
chr1	120934384	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:27:36
chr1	120934385	.	G	.	.	PASS	END=120934387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:30:36
chr1	120934388	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:27:34
chr1	120934389	.	A	.	.	PASS	END=120934390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:30:34
chr1	120934391	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:27:34
chr1	120934392	.	T	.	.	PASS	END=120934393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:33:33
chr1	120934394	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:27:33
chr1	120934395	.	A	.	.	PASS	END=120934404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:30:32
chr1	120934405	.	G	.	.	LowGQX	END=120934412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:21:26
chr1	120934413	.	C	.	.	PASS	END=120934414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:30:27
chr1	120934415	.	C	.	.	LowGQX	END=120934421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:27:24
chr1	120934422	.	A	.	.	PASS	END=120934426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:30:25
chr1	120934427	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:27:25
chr1	120934428	.	C	.	.	PASS	END=120934432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:30:22
chr1	120934433	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:27:22
chr1	120934434	.	C	.	.	PASS	END=120934441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:30:21
chr1	120934442	.	T	.	.	LowGQX	END=120934443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:27:21
chr1	120934444	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:30:21
chr1	120934445	.	A	.	.	LowGQX	END=120934447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:24:21
chr1	120934448	.	A	.	.	PASS	END=120934450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:30:20
chr1	120934451	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:44:27:19
chr1	120934452	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:44:30:19
chr1	120934453	.	C	.	.	PASS	END=120934465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:33:20
chr1	120934466	.	A	.	.	LowMQ	END=120934470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:30:19
chr1	120934471	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:49:24:19
chr1	120934472	.	G	.	.	LowMQ	END=120934475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:33:19
chr1	120934476	.	C	.	.	PASS	END=120934482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:30:20
chr1	120934483	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:45:27:20
chr1	120934484	.	G	.	.	PASS	END=120934486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:33:20
chr1	120934487	.	G	.	.	LowGQX;LowMQ	END=120934488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:27:19
chr1	120934489	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:47:18:18
chr1	120934490	.	C	.	.	LowMQ	END=120934494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:30:19
chr1	120934495	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:48:18:19
chr1	120934496	.	C	.	.	LowMQ	END=120934500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:30:19
chr1	120934501	.	T	.	.	LowGQX;LowMQ	END=120934504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:24:18
chr1	120934505	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:47:18:18
chr1	120934506	.	G	.	.	LowGQX;LowMQ	END=120934526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:21:17
chr1	120934527	.	G	.	.	LowGQX;LowMQ	END=120934528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:18:17
chr1	120934529	.	G	.	.	LowGQX;LowMQ	END=120934533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:21:17
chr1	120934534	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:42:18:17
chr1	120934535	.	G	.	.	LowGQX;LowMQ	END=120934549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:21:17
chr1	120934550	.	G	.	.	LowGQX;LowMQ	END=120934554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:18:17
chr1	120934555	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:41:15:17
chr1	120934556	.	C	.	.	LowGQX;LowMQ	END=120934561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:18:16
chr1	120934562	.	G	.	.	LowGQX;LowMQ	END=120934569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:15:14
chr1	120934570	.	T	.	.	LowGQX;LowMQ	END=120934576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:9:12
chr1	120934577	.	T	.	.	LowGQX;LowMQ	END=120934598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:6:12
chr1	120934599	.	C	.	.	LowGQX;LowMQ	END=120934603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:9:14
chr1	120934604	.	A	.	.	LowGQX;LowMQ	END=120934614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:10
chr1	120934615	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	120934616	.	G	.	.	LowGQX;LowMQ	END=120934632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:3:11
chr1	120934633	.	T	.	.	LowGQX;LowMQ	END=120934640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:3:13
chr1	120935409	.	A	.	.	PASS	END=120935468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:24
chr1	120935469	.	C	.	.	PASS	END=120935508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:20
chr1	120935830	.	A	.	.	PASS	END=120935929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:38
chr1	121115764	.	G	.	.	LowGQX	END=121115785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:33
chr1	121115786	.	C	.	16.43	LowGQX	DP=5;MQ=36;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:5:0.18:36:0
chr1	121115787	.	C	.	.	LowGQX	END=121115791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:38
chr1	121115792	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:41
chr1	121115793	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:41
chr1	121115794	.	C	.	.	LowGQX	END=121115795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:41
chr1	121115796	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:41
chr1	121115797	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:41
chr1	121115798	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:41
chr1	121115799	.	C	.	.	LowGQX	END=121115810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:39
chr1	121115811	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:40
chr1	121115812	.	G	.	.	LowGQX	END=121115813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:40
chr1	121115814	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:40
chr1	121115815	.	T	.	.	LowGQX	END=121115818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:40
chr1	121115819	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:39
chr1	121115820	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:39
chr1	121115821	.	A	.	.	PASS	END=121115840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:37
chr1	121115841	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:38
chr1	121115842	.	C	.	.	PASS	END=121115957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:38
chr1	121115958	.	T	C	28.72	LowGQX;LowQD	BaseQRankSum=-1.944;DP=15;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=40;MQ0=2;MQRankSum=-2.451;QD=1.91;ReadPosRankSum=-2.451;SB=-19.52	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:10,5:15:58.70:59,0,248:40:29:0.333
chr1	121115959	.	G	.	.	PASS	END=121115960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:40
chr1	121115961	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:40
chr1	121115962	.	C	.	.	PASS	END=121115969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:40
chr1	121115970	.	T	.	.	LowGQX	END=121115971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:41
chr1	121115972	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:41
chr1	121115973	.	A	.	.	LowGQX	END=121115976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:41
chr1	121115977	.	C	.	.	LowGQX	END=121115982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:41
chr1	121115983	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:41
chr1	121115984	.	T	.	.	LowGQX	END=121115994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:41
chr1	121115995	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:41
chr1	121115996	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:41
chr1	121115997	.	A	.	.	PASS	END=121116001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:41
chr1	121116002	.	T	.	.	LowGQX	END=121116006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:41
chr1	121116007	.	G	.	.	PASS	END=121116010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:41
chr1	121116011	.	G	.	.	LowGQX	END=121116018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:39
chr1	121116019	.	T	.	.	LowGQX	END=121116025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:38
chr1	121116026	.	G	.	.	LowGQX	END=121116027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:36
chr1	121116028	.	T	.	.	LowGQX	END=121116029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:9:36
chr1	121116030	.	G	.	.	LowGQX	END=121116034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:34
chr1	121116035	.	G	.	.	LowGQX	END=121116046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:34
chr1	121116047	.	G	.	.	LowGQX	END=121116048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:9:37
chr1	121116049	.	T	.	.	LowGQX	END=121116051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:37
chr1	121116052	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:37
chr1	121116053	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:37
chr1	121116054	.	A	.	.	LowGQX	END=121116056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:37
chr1	121116057	.	C	.	.	LowGQX	END=121116062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:15:36
chr1	121116063	.	C	.	.	LowGQX	END=121116064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:36
chr1	121116065	.	G	.	.	LowGQX	END=121116068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:36
chr1	121116069	.	T	.	.	LowGQX	END=121116073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:36
chr1	121116074	.	G	.	.	LowGQX	END=121116077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:15:35
chr1	121116078	.	G	.	.	LowGQX	END=121116080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:18:38
chr1	121116081	.	A	.	.	LowGQX	END=121116093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:38
chr1	121116094	.	A	.	.	LowGQX	END=121116095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:15:40
chr1	121116096	.	G	.	.	LowGQX	END=121116099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:40
chr1	121116100	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:40
chr1	121116101	.	G	.	.	LowGQX	END=121116113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:40
chr1	121116687	.	C	.	.	PASS	END=121116732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:53
chr1	121116733	.	A	G	840.52	PASS	BaseQRankSum=0.218;DP=107;Dels=0.00;FS=10.313;HRun=1;HaplotypeScore=17.0970;MQ=53;MQ0=0;MQRankSum=-8.371;QD=7.86;ReadPosRankSum=1.751;SB=-322.10	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:62,45:107:99:871,0,1636:53:99:0.421
chr1	121116734	.	G	.	.	PASS	END=121116772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:52
chr1	121116773	.	T	.	.	PASS	END=121116797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:52
chr1	121116798	.	C	.	.	PASS	END=121116812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:53
chr1	121116813	.	G	.	.	PASS	END=121116815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:95:54
chr1	121124494	.	C	.	.	PASS	END=121124507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:87:23
chr1	121124508	.	T	.	.	PASS	END=121124521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:20
chr1	121124522	.	G	.	.	LowMQ	END=121124531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:17
chr1	121124532	.	G	.	.	LowMQ	END=121124565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:83:14
chr1	121124566	.	G	.	.	LowMQ	END=121124631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:13
chr1	121124632	.	A	.	.	LowMQ	END=121124691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:303:83:11
chr1	121124692	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:302:56:11
chr1	121124693	.	T	.	.	LowMQ	END=121124694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:301:87:11
chr1	121124695	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:301:65:11
chr1	121124696	.	C	.	.	LowMQ	END=121124701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:300:84:11
chr1	121124702	.	T	.	.	LowMQ	END=121124713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:276:72:11
chr1	121124714	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:272:36:12
chr1	121124715	.	C	.	.	LowMQ	END=121124736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:72:12
chr1	121124737	.	T	.	.	LowMQ	END=121124756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:66:13
chr1	121124757	.	T	.	.	LowMQ	END=121124770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:60:14
chr1	121124771	.	C	.	.	LowMQ	END=121124785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:57:14
chr1	121124786	.	G	.	.	LowMQ	END=121124787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:60:15
chr1	121124788	.	T	.	.	LowMQ	END=121124792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:45:15
chr1	121124793	.	C	.	.	LowMQ	END=121124799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:48:16
chr1	121124800	.	C	.	.	LowMQ	END=121124804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:57:18
chr1	121124805	.	A	.	.	PASS	END=121124807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:48:20
chr1	121124808	.	C	.	.	PASS	END=121124820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:45:23
chr1	121124821	.	G	.	.	PASS	END=121124833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:28
chr1	121124834	.	T	.	.	PASS	END=121124837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:31
chr1	121124838	.	C	.	.	PASS	END=121124848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:29
chr1	121124849	.	A	.	.	PASS	END=121124853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:29
chr1	121128367	.	G	.	.	LowGQX;LowMQ	END=121128525	GT	./.
chr1	121129424	.	T	.	.	PASS	END=121129449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:515:99:20
chr1	121129450	.	T	.	.	LowMQ	END=121129481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:580:99:15
chr1	121129482	.	C	.	.	LowMQ	END=121129556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:476:99:12
chr1	121129557	.	T	C	1300.87	LowMQ;SB	BaseQRankSum=-0.359;DP=486;Dels=0.00;FS=98.338;HRun=0;HaplotypeScore=11.3630;MQ=13;MQ0=376;MQRankSum=1.549;QD=2.68;ReadPosRankSum=-0.227;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:241,243:486:99:1331,0,1299:13:99:0.502
chr1	121129558	.	G	.	.	LowMQ	END=121129658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:375:99:13
chr1	121129659	.	C	.	.	LowMQ	END=121129690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:333:99:14
chr1	121129691	.	C	.	.	LowMQ	END=121129699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:347:99:18
chr1	121129700	.	A	.	.	PASS	END=121129733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:280:99:20
chr1	121129734	.	T	.	.	PASS	END=121129746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:23
chr1	121129747	.	G	.	.	PASS	END=121129778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:26
chr1	121129779	.	T	.	.	PASS	END=121129783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:31
chr1	121306453	.	A	.	.	LowGQX	END=121306711	GT	./.
chr1	121307472	.	T	.	.	LowGQX	END=121307628	GT	./.
chr1	121309923	.	T	.	.	LowGQX	END=121310074	GT	./.
chr1	121310533	.	G	.	.	LowGQX	END=121310632	GT	./.
chr1	143767352	.	C	.	.	PASS	END=143767370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:31
chr1	143767371	.	C	.	.	PASS	END=143767404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:38
chr1	143767405	.	C	.	.	PASS	END=143767465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:44
chr1	143767466	.	G	A	2150.61	PASS	BaseQRankSum=-2.138;DP=322;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=31.0143;MQ=49;MQ0=12;MQRankSum=5.062;QD=6.68;ReadPosRankSum=0.058;SB=-648.83	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:206,113:322:99:2181,0,4939:49:99:0.354
chr1	143767467	.	C	.	.	PASS	END=143767493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:323:99:48
chr1	143767494	.	T	.	.	PASS	END=143767512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:408:99:47
chr1	143767513	.	A	T	2023.74	PASS	BaseQRankSum=0.973;DP=405;Dels=0.00;FS=1.503;HRun=0;HaplotypeScore=38.2245;MQ=48;MQ0=11;MQRankSum=-3.540;QD=5.00;ReadPosRankSum=-1.214;SB=-978.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:298,107:405:99:2054,0,7670:48:99:0.264
chr1	143767514	.	A	.	.	PASS	END=143767521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:407:99:47
chr1	143767522	.	A	G	2038.54	PASS	BaseQRankSum=3.017;DP=406;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=38.1372;MQ=47;MQ0=11;MQRankSum=-3.897;QD=5.02;ReadPosRankSum=-0.287;SB=-1015.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:300,103:406:99:2069,0,7224:47:99:0.256
chr1	143767523	.	C	.	.	PASS	END=143767543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:409:99:45
chr1	143767544	.	T	A	431.30	LowQD	BaseQRankSum=4.806;DP=419;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=79.7194;MQ=45;MQ0=14;MQRankSum=-2.535;QD=1.03;ReadPosRankSum=1.730;SB=-205.16	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:369,50:419:99:461,0,9232:45:99:0.119
chr1	143767545	.	T	.	.	PASS	END=143767546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:403:99:45
chr1	143767547	.	G	A	1730.67	PASS	BaseQRankSum=4.081;DP=403;Dels=0.00;FS=3.528;HRun=0;HaplotypeScore=81.5082;MQ=45;MQ0=10;MQRankSum=-3.831;QD=4.29;ReadPosRankSum=0.369;SB=-1003.68	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:300,101:403:99:1761,0,7431:45:99:0.252
chr1	143767548	.	C	.	.	PASS	END=143767627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:341:99:38
chr1	143767628	.	C	T	1293.78	PASS	BaseQRankSum=4.466;DP=342;Dels=0.00;FS=3.359;HRun=0;HaplotypeScore=29.1284;MQ=38;MQ0=31;MQRankSum=-6.024;QD=3.78;ReadPosRankSum=-2.822;SB=-455.71	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:264,76:342:99:1324,0,6191:38:99:0.224
chr1	143767629	.	C	.	.	PASS	END=143767642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:331:99:38
chr1	143767643	.	T	C	2429.57	PASS	BaseQRankSum=5.361;DP=310;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=109.4576;MQ=39;MQ0=29;MQRankSum=-13.144;QD=7.84;ReadPosRankSum=-0.448;SB=-983.80	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:170,137:310:99:2460,0,4306:39:99:0.446
chr1	143767644	.	G	.	.	PASS	END=143767645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:305:99:39
chr1	143767646	.	G	A	1936.33	PASS	BaseQRankSum=4.376;DP=305;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=105.6700;MQ=39;MQ0=31;MQRankSum=5.343;QD=6.35;ReadPosRankSum=0.144;SB=-962.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:220,82:305:99:1966,0,4871:39:99:0.272
chr1	143767647	.	T	.	.	PASS	END=143767777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:299:99:38
chr1	143767778	.	T	A	3478.77	PASS	BaseQRankSum=0.022;DP=302;Dels=0.00;FS=1.832;HRun=0;HaplotypeScore=52.4918;MQ=43;MQ0=13;MQRankSum=-14.386;QD=11.52;ReadPosRankSum=3.950;SB=-709.83	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:124,177:302:99:3479,0,3255:43:99:0.588
chr1	143767779	.	G	.	.	PASS	END=143767803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:42
chr1	143767804	.	C	.	.	PASS	END=143767832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:44
chr1	143767833	.	T	C	2637.69	SB	BaseQRankSum=0.875;DP=181;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=27.7239;MQ=44;MQ0=9;MQRankSum=-11.076;QD=14.57;ReadPosRankSum=-0.951;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:68,113:181:99:2668,0,1918:44:99:0.624
chr1	143767834	.	G	.	.	PASS	END=143767850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:44
chr1	143897544	.	C	.	.	LowGQX	END=143897694	GT	./.
chr1	143905970	.	T	.	.	LowGQX	END=143905987	GT	./.
chr1	143905988	.	A	.	.	LowGQX	END=143906003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143906004	.	T	.	.	LowGQX	.	GT	./.
chr1	143906005	.	T	.	.	LowGQX	END=143906024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143906025	.	T	.	.	LowGQX	.	GT	./.
chr1	143906026	.	C	.	.	LowGQX	END=143906136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143910006	.	C	.	.	LowGQX	END=143910058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143910059	.	G	.	33	LowGQX	DP=2;MQ=25;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:25:3
chr1	143910060	.	A	.	.	LowGQX	END=143910063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143910064	.	G	.	.	LowGQX	.	GT	./.
chr1	143910065	.	T	.	.	LowGQX	END=143910066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143910067	.	C	.	.	LowGQX	END=143910068	GT	./.
chr1	143910069	.	A	.	.	LowGQX	END=143910078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143910079	.	A	.	.	LowGQX	.	GT	./.
chr1	143910080	.	T	.	.	LowGQX	END=143910083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143910084	.	A	.	.	LowGQX	.	GT	./.
chr1	143910085	.	A	.	.	LowGQX	END=143910090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143910091	.	C	.	.	LowGQX	END=143910092	GT	./.
chr1	143910093	.	A	.	.	LowGQX	END=143910095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143910096	.	T	.	.	LowGQX	.	GT	./.
chr1	143910097	.	C	.	.	LowGQX	END=143910102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143910103	.	G	.	.	LowGQX	.	GT	./.
chr1	143910104	.	T	.	.	LowGQX	END=143910105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143910106	.	T	.	.	LowGQX	.	GT	./.
chr1	143910107	.	A	.	.	LowGQX	END=143910113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143910114	.	C	.	.	LowGQX	.	GT	./.
chr1	143910115	.	A	.	.	LowGQX	END=143910122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143910123	.	G	.	.	LowGQX	.	GT	./.
chr1	143910124	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143910125	.	G	.	.	LowGQX	.	GT	./.
chr1	143910126	.	A	.	.	LowGQX	END=143910134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143910135	.	C	.	.	LowGQX	.	GT	./.
chr1	143910136	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143910137	.	T	.	.	LowGQX	END=143910139	GT	./.
chr1	143910140	.	A	.	.	LowGQX	END=143910141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143910142	.	T	.	.	LowGQX	.	GT	./.
chr1	143910143	.	G	.	.	LowGQX	END=143910146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143910147	.	T	.	.	LowGQX	END=143910148	GT	./.
chr1	143910149	.	C	.	.	LowGQX	END=143910166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	143912112	.	A	.	.	LowGQX	END=143912235	GT	./.
chr1	143912236	.	G	.	.	LowGQX	END=143912295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	143916166	.	G	.	.	LowGQX	END=143916286	GT	./.
chr1	143916287	.	G	.	.	LowGQX	END=143916321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	143916322	.	A	.	.	LowGQX	.	GT	./.
chr1	143916323	.	A	.	.	LowGQX	END=143916325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	144013901	.	A	.	.	LowGQX	.	GT	./.
chr1	144013902	.	G	.	.	LowGQX	END=144014047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144014048	.	A	.	.	LowGQX	END=144014049	GT	./.
chr1	144014050	.	C	.	.	LowGQX	END=144014067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144014068	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	144014069	.	G	.	.	LowGQX	END=144014093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144053506	.	G	.	.	LowMQ	END=144053542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:78:17
chr1	144053543	.	A	.	.	PASS	END=144053566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:20
chr1	144053567	.	C	T	159.33	LowQD;SB	BaseQRankSum=1.231;DP=152;Dels=0.01;FS=30.514;HRun=0;HaplotypeScore=12.2191;MQ=23;MQ0=96;MQRankSum=-3.672;QD=1.05;ReadPosRankSum=1.294;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:109,41:151:99:189,0,972:23:99:0.273
chr1	144053568	.	G	.	.	PASS	END=144053595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:95:23
chr1	144053596	.	T	.	.	PASS	END=144053644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:31
chr1	144053645	.	G	.	.	PASS	END=144053667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:39
chr1	144053668	.	G	.	.	PASS	END=144053702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:47
chr1	144053703	.	G	.	.	PASS	END=144053705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:51
chr1	144094301	.	T	.	.	LowMQ	END=144094303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:18
chr1	144094304	.	G	A	503.42	LowMQ	BaseQRankSum=1.584;DP=117;Dels=0.00;FS=4.124;HRun=0;HaplotypeScore=8.6722;MQ=18;MQ0=59;MQRankSum=-0.989;QD=4.30;ReadPosRankSum=-1.568;SB=-156.87	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:74,42:117:99:533,0,677:18:99:0.362
chr1	144094305	.	T	.	.	LowMQ	END=144094346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:15
chr1	144094347	.	C	.	.	LowMQ	END=144094424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:93:13
chr1	144094425	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:170:67:13
chr1	144094426	.	T	.	.	LowMQ	END=144094431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:81:12
chr1	144094432	.	A	.	.	LowMQ	END=144094435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:72:12
chr1	144094436	.	G	.	.	LowMQ	END=144094437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:63:12
chr1	144094438	.	G	.	.	LowMQ	END=144094439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:46:11
chr1	144094440	.	T	.	.	LowMQ	END=144094458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:66:11
chr1	144146736	.	C	.	.	LowGQX;LowMQ	END=144147085	GT	./.
chr1	144148738	.	A	.	.	LowGQX;LowMQ	END=144148892	GT	./.
chr1	144149655	.	A	.	.	LowGQX;LowMQ	END=144150004	GT	./.
chr1	144150908	.	G	.	.	LowGQX	END=144150910	GT	./.
chr1	144150911	.	G	.	.	LowGQX;LowMQ	END=144151067	GT	./.
chr1	144151447	.	A	.	.	LowGQX;LowMQ	END=144151786	GT	./.
chr1	144152929	.	C	.	.	LowGQX;LowMQ	END=144153088	GT	./.
chr1	144156971	.	G	.	.	LowGQX;LowMQ	END=144157189	GT	./.
chr1	144158094	.	T	.	.	LowGQX;LowMQ	END=144158253	GT	./.
chr1	144158870	.	G	.	.	LowGQX;LowMQ	END=144158982	GT	./.
chr1	144158983	.	T	.	.	LowGQX	END=144159068	GT	./.
chr1	144159679	.	C	.	.	LowGQX;LowMQ	END=144159838	GT	./.
chr1	144160344	.	T	.	.	LowGQX;LowMQ	END=144160587	GT	./.
chr1	144161213	.	C	.	.	LowGQX	END=144161372	GT	./.
chr1	144162001	.	G	.	.	LowGQX;LowMQ	END=144162199	GT	./.
chr1	144162837	.	T	.	.	LowGQX;LowMQ	END=144162996	GT	./.
chr1	144163556	.	T	.	.	LowGQX;LowMQ	END=144163799	GT	./.
chr1	144164435	.	C	.	.	LowGQX;LowMQ	END=144164594	GT	./.
chr1	144165100	.	T	.	.	LowGQX;LowMQ	END=144165343	GT	./.
chr1	144165969	.	C	.	.	LowGQX;LowMQ	END=144166045	GT	./.
chr1	144166046	.	A	.	.	LowGQX	END=144166128	GT	./.
chr1	144166761	.	G	.	.	LowGQX;LowMQ	END=144166959	GT	./.
chr1	144167597	.	T	.	.	LowGQX;LowMQ	END=144167756	GT	./.
chr1	144168360	.	G	.	.	LowGQX;LowMQ	END=144168482	GT	./.
chr1	144168483	.	T	.	.	LowGQX	END=144168558	GT	./.
chr1	144169168	.	C	.	.	LowGQX;LowMQ	END=144169327	GT	./.
chr1	144169838	.	T	.	.	LowGQX;LowMQ	END=144170081	GT	./.
chr1	144170707	.	C	.	.	LowGQX	END=144170813	GT	./.
chr1	144170814	.	G	.	.	LowGQX;LowMQ	END=144170866	GT	./.
chr1	144171501	.	G	.	.	LowGQX;LowMQ	END=144171699	GT	./.
chr1	144172337	.	T	.	.	LowGQX;LowMQ	END=144172496	GT	./.
chr1	144173029	.	T	.	.	LowGQX;LowMQ	END=144173168	GT	./.
chr1	144173169	.	G	.	.	LowGQX	END=144173272	GT	./.
chr1	144173898	.	C	.	.	LowGQX	END=144174057	GT	./.
chr1	144174692	.	G	.	.	LowGQX;LowMQ	END=144174890	GT	./.
chr1	144175528	.	T	.	.	LowGQX;LowMQ	END=144175687	GT	./.
chr1	144176220	.	T	.	.	LowGQX;LowMQ	END=144176278	GT	./.
chr1	144176279	.	C	.	.	LowGQX	END=144176295	GT	./.
chr1	144176296	.	G	.	.	LowGQX;LowMQ	END=144176463	GT	./.
chr1	144177089	.	C	.	.	LowGQX	END=144177192	GT	./.
chr1	144177193	.	G	.	.	LowGQX;LowMQ	END=144177248	GT	./.
chr1	144177875	.	G	.	.	LowGQX;LowMQ	END=144178073	GT	./.
chr1	144178711	.	T	.	.	LowGQX;LowMQ	END=144178870	GT	./.
chr1	144179403	.	T	.	.	LowGQX;LowMQ	END=144179537	GT	./.
chr1	144179538	.	T	.	.	LowGQX	END=144179582	GT	./.
chr1	144179583	.	C	.	.	LowGQX;LowMQ	END=144179646	GT	./.
chr1	144180272	.	C	.	.	LowGQX;LowMQ	END=144180427	GT	./.
chr1	144180428	.	A	.	.	LowGQX	END=144180431	GT	./.
chr1	144181064	.	G	.	.	LowGQX;LowMQ	END=144181262	GT	./.
chr1	144181900	.	T	.	.	LowGQX;LowMQ	END=144182059	GT	./.
chr1	144182625	.	T	.	.	LowGQX;LowMQ	END=144182868	GT	./.
chr1	144183504	.	C	.	.	LowGQX;LowMQ	END=144183663	GT	./.
chr1	144184181	.	T	.	.	LowGQX;LowMQ	END=144184424	GT	./.
chr1	144185050	.	C	.	.	LowGQX	END=144185209	GT	./.
chr1	144185828	.	G	.	.	LowGQX;LowMQ	END=144186026	GT	./.
chr1	144186664	.	T	.	.	LowGQX;LowMQ	END=144186823	GT	./.
chr1	144187389	.	T	.	.	LowGQX;LowMQ	END=144187632	GT	./.
chr1	144188268	.	C	.	.	LowGQX;LowMQ	END=144188283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:6
chr1	144188284	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	144188285	.	A	.	.	LowGQX;LowMQ	END=144188301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:3:5
chr1	144188302	.	G	.	.	LowGQX;LowMQ	END=144188308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:3:5
chr1	144188309	.	A	.	.	LowGQX;LowMQ	END=144188427	GT	./.
chr1	144189012	.	G	.	.	LowGQX;LowMQ	END=144189129	GT	./.
chr1	144189130	.	A	.	.	LowGQX	END=144189176	GT	./.
chr1	144189177	.	C	.	.	LowGQX	END=144189184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	144189810	.	C	.	.	LowGQX	END=144189969	GT	./.
chr1	144190582	.	G	.	.	LowGQX;LowMQ	END=144190780	GT	./.
chr1	144191418	.	T	.	.	LowGQX;LowMQ	END=144191577	GT	./.
chr1	144192135	.	T	.	.	LowGQX;LowMQ	END=144192378	GT	./.
chr1	144193014	.	C	.	.	LowGQX;LowMQ	END=144193173	GT	./.
chr1	144193689	.	T	.	.	LowGQX;LowMQ	END=144193932	GT	./.
chr1	144194558	.	C	.	.	LowGQX;LowMQ	END=144194627	GT	./.
chr1	144194628	.	T	.	.	LowGQX	END=144194717	GT	./.
chr1	144195344	.	G	.	.	LowGQX;LowMQ	END=144195542	GT	./.
chr1	144196180	.	T	.	.	LowGQX;LowMQ	END=144196339	GT	./.
chr1	144196905	.	T	.	.	LowGQX;LowMQ	END=144197148	GT	./.
chr1	144197784	.	C	.	.	LowGQX;LowMQ	END=144197943	GT	./.
chr1	144198449	.	T	.	.	LowGQX;LowMQ	END=144198692	GT	./.
chr1	144199318	.	C	.	.	LowGQX;LowMQ	END=144199446	GT	./.
chr1	144199447	.	G	.	.	LowGQX	END=144199477	GT	./.
chr1	144200106	.	G	.	.	LowGQX;LowMQ	END=144200304	GT	./.
chr1	144200942	.	T	.	.	LowGQX;LowMQ	END=144201101	GT	./.
chr1	144201634	.	T	.	.	LowGQX;LowMQ	END=144201877	GT	./.
chr1	144202503	.	C	.	.	LowGQX;LowMQ	END=144202537	GT	./.
chr1	144202538	.	T	.	.	LowGQX	END=144202563	GT	./.
chr1	144202564	.	G	.	.	LowGQX;LowMQ	END=144202662	GT	./.
chr1	144203299	.	G	.	.	LowGQX;LowMQ	END=144203497	GT	./.
chr1	144204135	.	T	.	.	LowGQX;LowMQ	END=144204294	GT	./.
chr1	144204854	.	T	.	.	LowGQX;LowMQ	END=144205097	GT	./.
chr1	144205733	.	C	.	.	LowGQX;LowMQ	END=144205892	GT	./.
chr1	144206476	.	G	.	.	LowGQX;LowMQ	END=144206649	GT	./.
chr1	144207275	.	C	.	.	LowGQX	END=144207290	GT	./.
chr1	144207291	.	G	.	.	LowGQX;LowMQ	END=144207434	GT	./.
chr1	144208061	.	G	.	.	LowGQX;LowMQ	END=144208259	GT	./.
chr1	144208897	.	T	.	.	LowGQX;LowMQ	END=144209056	GT	./.
chr1	144209589	.	T	.	.	LowGQX;LowMQ	END=144209814	GT	./.
chr1	144209815	.	T	.	.	LowGQX	END=144209832	GT	./.
chr1	144210458	.	C	.	.	LowGQX	END=144210617	GT	./.
chr1	144211245	.	G	.	.	LowGQX;LowMQ	END=144211443	GT	./.
chr1	144212081	.	G	.	.	LowGQX;LowMQ	END=144212241	GT	./.
chr1	144212844	.	G	.	.	LowGQX;LowMQ	END=144212976	GT	./.
chr1	144212977	.	A	.	.	LowGQX	END=144212989	GT	./.
chr1	144212990	.	T	.	.	LowGQX;LowMQ	END=144213140	GT	./.
chr1	144213141	.	G	.	.	LowGQX	END=144213177	GT	./.
chr1	144213643	.	C	.	.	LowGQX	END=144213669	GT	./.
chr1	144213670	.	G	.	.	LowGQX;LowMQ	END=144213802	GT	./.
chr1	144214429	.	G	.	.	LowGQX;LowMQ	END=144214627	GT	./.
chr1	144215265	.	T	.	.	LowGQX;LowMQ	END=144215424	GT	./.
chr1	144215956	.	A	.	.	LowGQX;LowMQ	END=144216145	GT	./.
chr1	144216146	.	A	.	.	LowGQX	END=144216200	GT	./.
chr1	144216826	.	C	.	.	LowGQX;LowMQ	END=144216985	GT	./.
chr1	144217611	.	G	.	.	LowGQX;LowMQ	END=144217809	GT	./.
chr1	144218447	.	G	.	.	LowGQX;LowMQ	END=144218607	GT	./.
chr1	144219235	.	G	.	.	LowGQX;LowMQ	END=144219473	GT	./.
chr1	144220043	.	T	.	.	LowGQX;LowMQ	END=144220202	GT	./.
chr1	144220786	.	G	.	.	LowGQX	END=144220832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:33
chr1	144220833	.	G	.	.	LowGQX	END=144220893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:6:24
chr1	144220894	.	A	.	.	LowGQX	END=144220900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:3:21
chr1	144220901	.	C	.	.	LowGQX;LowMQ	END=144220903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:16
chr1	144220904	.	C	.	33	LowGQX;LowMQ	DP=6;MQ=16;MQ0=5	GT:AD:DP:GQ:MQ:GQX	0/0:4:6:3.01:16:3
chr1	144220905	.	A	.	.	LowGQX;LowMQ	END=144220959	GT	./.
chr1	144221585	.	C	.	.	LowGQX;LowMQ	END=144221744	GT	./.
chr1	144222378	.	G	.	.	LowGQX;LowMQ	END=144222576	GT	./.
chr1	144223214	.	G	.	.	LowGQX;LowMQ	END=144223374	GT	./.
chr1	144223931	.	A	.	.	LowGQX;LowMQ	END=144224270	GT	./.
chr1	144339766	.	G	.	.	LowGQX	END=144340405	GT	./.
chr1	144363676	.	A	.	.	LowGQX;LowMQ	END=144364174	GT	./.
chr1	144520635	.	T	.	.	LowGQX	END=144520832	GT	./.
chr1	144615130	.	C	.	.	LowGQX;LowMQ	END=144615172	GT	./.
chr1	144615173	.	A	.	.	LowGQX	END=144615181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:23
chr1	144615182	.	C	.	33	LowGQX	DP=4;MQ=20;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:20:3
chr1	144615183	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:20
chr1	144615184	.	A	.	.	LowGQX	END=144615185	GT	./.
chr1	144615186	.	A	.	.	LowGQX	END=144615187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:20
chr1	144615188	.	A	.	.	LowGQX	.	GT	./.
chr1	144615189	.	T	.	.	LowGQX	END=144615191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:20
chr1	144615192	.	A	.	.	LowGQX	.	GT	./.
chr1	144615193	.	C	.	.	LowGQX	END=144615194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:20
chr1	144615195	.	A	.	.	LowGQX	END=144615196	GT	./.
chr1	144615197	.	A	.	.	LowGQX	END=144615199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:20
chr1	144615200	.	T	.	.	LowGQX	.	GT	./.
chr1	144615201	.	T	.	.	LowGQX	END=144615211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:20
chr1	144615212	.	T	.	.	LowGQX	.	GT	./.
chr1	144615213	.	T	.	.	LowGQX	END=144615214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:20
chr1	144615215	.	G	.	.	LowGQX	.	GT	./.
chr1	144615216	.	C	.	.	LowGQX	END=144615227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:20
chr1	144615228	.	A	.	.	LowGQX	END=144615229	GT	./.
chr1	144615230	.	C	.	.	LowGQX	END=144615235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:20
chr1	144615236	.	G	.	.	LowGQX	.	GT	./.
chr1	144615237	.	T	.	33	LowGQX	DP=3;MQ=23;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:23:3
chr1	144615238	.	A	.	.	LowGQX	END=144615241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:23
chr1	144615242	.	C	.	.	LowGQX	.	GT	./.
chr1	144615243	.	T	.	.	LowGQX	END=144615253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:23
chr1	144615254	.	T	.	.	LowGQX	.	GT	./.
chr1	144615255	.	T	.	.	LowGQX	END=144615277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:20
chr1	144615278	.	C	.	.	LowGQX	.	GT	./.
chr1	144615279	.	C	.	.	LowGQX	END=144615303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:20
chr1	144617149	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:45
chr1	144617150	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:21:45
chr1	144617151	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:45
chr1	144617152	.	T	.	.	LowGQX	END=144617154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:27:45
chr1	144617155	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:45
chr1	144617156	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:27:45
chr1	144617157	.	A	.	.	PASS	END=144617158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:30:45
chr1	144617159	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:24:45
chr1	144617160	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:45
chr1	144617161	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:27:45
chr1	144617162	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:45
chr1	144617163	.	T	.	.	LowGQX	END=144617164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:24:45
chr1	144617165	.	A	.	.	PASS	END=144617167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:30:45
chr1	144617168	.	A	.	.	LowGQX	END=144617176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:24:45
chr1	144617177	.	G	.	.	PASS	END=144617191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:30:46
chr1	144617192	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:27:47
chr1	144617193	.	T	.	.	PASS	END=144617230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:30:47
chr1	144617231	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:24:50
chr1	144617232	.	C	.	.	PASS	END=144617248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:51
chr1	144617249	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:56
chr1	144617250	.	C	.	.	PASS	END=144617252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:56
chr1	144618081	.	G	.	.	PASS	END=144618113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:53
chr1	144618114	.	G	.	.	PASS	END=144618121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:52
chr1	144618122	.	A	.	.	PASS	END=144618124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:33:52
chr1	144618125	.	C	.	.	PASS	END=144618143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:51
chr1	144618144	.	A	G	166.44	PASS	BaseQRankSum=-1.292;DP=20;Dels=0.00;FS=2.077;HRun=2;HaplotypeScore=4.7873;MQ=51;MQ0=0;MQRankSum=-3.799;QD=8.32;ReadPosRankSum=-0.532;SB=-136.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:9,11:20:99:196,0,306:51:99:0.550
chr1	144618145	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:42:51
chr1	144618146	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:3:51
chr1	144618147	.	A	.	.	PASS	END=144618163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:49
chr1	144618164	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:36:49
chr1	144618165	.	G	.	.	PASS	END=144618175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:48
chr1	144618176	.	G	.	.	PASS	END=144618190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:47
chr1	144618191	.	C	.	.	PASS	END=144618197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:45
chr1	144618198	.	C	.	.	PASS	END=144618200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:45
chr1	144618201	.	T	C	21.40	LowGQX;LowQD;SB	BaseQRankSum=-1.174;DP=20;Dels=0.00;FS=5.798;HRun=1;HaplotypeScore=0.0000;MQ=45;MQ0=1;MQRankSum=-2.068;QD=1.07;ReadPosRankSum=0.950;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:16,4:20:51.36:51,0,470:45:21:0.200
chr1	144618202	.	G	.	.	PASS	END=144618230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:40
chr1	144618231	.	A	.	.	PASS	END=144618239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:38
chr1	144618240	.	A	.	.	PASS	END=144618265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:35
chr1	144618266	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:35
chr1	144618267	.	C	.	.	PASS	END=144618272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:35
chr1	144618273	.	A	.	.	LowGQX	END=144618275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:35
chr1	144618276	.	T	.	.	PASS	END=144618279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:35
chr1	144618280	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:35
chr1	144618281	.	C	.	.	PASS	END=144618283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:35
chr1	144618284	.	A	.	.	LowGQX	END=144618288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:36
chr1	144618289	.	C	.	.	PASS	END=144618290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:36
chr1	144618291	.	G	.	.	LowGQX	END=144618294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:21:36
chr1	144618295	.	A	.	.	PASS	END=144618296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:36
chr1	144619343	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:48
chr1	144619344	.	T	.	.	LowGQX	END=144619345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:48
chr1	144619346	.	G	A	253.18	LowGQ;LowGQX	DP=10;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=0.0000;MQ=48;MQ0=1;QD=25.32;SB=-114.70	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,9:10:21.07:286,21,0:48:21:0.900
chr1	144619347	.	A	.	.	LowGQX	END=144619354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:48
chr1	144619355	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:48
chr1	144619356	.	A	.	.	LowGQX	END=144619358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:48
chr1	144619359	.	A	.	.	LowGQX	END=144619360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:15:48
chr1	144619361	.	G	.	.	LowGQX	END=144619397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:48
chr1	144619398	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:51
chr1	144619399	.	G	.	.	LowGQX	END=144619403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:52
chr1	144619404	.	A	.	.	LowGQX	END=144619440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:54
chr1	144619441	.	C	.	.	LowGQX	END=144619442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:56
chr1	144619882	.	G	.	.	LowGQX	END=144619895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:23
chr1	144619896	.	G	.	.	LowGQX	END=144619902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:6:26
chr1	144619903	.	T	A	79.54	LowGQ;LowGQX;SB	DP=7;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=26;MQ0=4;QD=11.36;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,7:7:9.03:112,9,0:26:9:1.000
chr1	144619904	.	G	.	.	LowGQX	END=144619913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:6:24
chr1	144619914	.	C	.	.	LowGQX	END=144619934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:9:27
chr1	144619935	.	T	.	.	LowGQX	END=144619936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:6:27
chr1	144619937	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:12:27
chr1	144619938	.	G	.	.	LowGQX	END=144619941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:30
chr1	144619942	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:31
chr1	144619943	.	C	.	.	LowGQX	END=144619956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:30
chr1	144619957	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:12:30
chr1	144619958	.	C	.	.	LowGQX	END=144619959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:30
chr1	144619960	.	A	.	.	LowGQX	END=144619961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:31
chr1	144619962	.	G	.	.	LowGQX	END=144619974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:31
chr1	144619975	.	C	T	14.12	LowGQX;LowQD	BaseQRankSum=-0.922;DP=10;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9469;MQ=32;MQ0=3;MQRankSum=-0.198;QD=1.41;ReadPosRankSum=-1.495;SB=-10.65	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:6,4:10:43.94:44,0,168:32:14:0.400
chr1	144619976	.	C	.	.	LowGQX	END=144619980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:32
chr1	144619981	.	A	.	.	LowGQX	END=144619985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:32
chr1	144619986	.	C	.	.	LowGQX	END=144619999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:33
chr1	144620000	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:33
chr1	144620001	.	A	.	.	LowGQX	END=144620002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:33
chr1	144620003	.	C	.	.	LowGQX	END=144620004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:33
chr1	144620005	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:0:33
chr1	144620006	.	A	.	.	LowGQX	END=144620008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:33
chr1	144620009	.	T	C	60.69	SB	BaseQRankSum=0.322;DP=11;Dels=0.00;FS=3.332;HRun=0;HaplotypeScore=1.9461;MQ=33;MQ0=3;MQRankSum=0.322;QD=5.52;ReadPosRankSum=-1.920;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:8,3:11:90.69:91,0,154:33:61:0.273
chr1	144620010	.	G	.	.	LowGQX	END=144620011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:33
chr1	144620012	.	G	.	.	LowGQX	END=144620016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:33
chr1	144620017	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:33
chr1	144620018	.	C	.	.	LowGQX	END=144620019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:31
chr1	144620020	.	A	.	.	LowGQX	END=144620021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:15:31
chr1	144620022	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:31
chr1	144620023	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:31
chr1	144620024	.	C	.	.	LowGQX	END=144620046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:31
chr1	144620047	.	G	.	.	LowGQX	END=144620058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:31
chr1	144620059	.	A	.	.	LowGQX	END=144620060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:31
chr1	144620061	.	G	.	.	LowGQX	END=144620065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:31
chr1	144620066	.	A	.	.	LowGQX	END=144620069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:32
chr1	144620070	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:32
chr1	144620071	.	A	.	.	LowGQX	END=144620085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:32
chr1	144620086	.	T	.	.	LowGQX	END=144620090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:31
chr1	144620091	.	C	T	82.72	LowGQ;LowGQX	DP=5;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=31;MQ0=1;QD=16.54;SB=-35.34	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,5:5:9.03:115,9,0:31:9:1.000
chr1	144620092	.	C	.	.	LowGQX	END=144620094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:31
chr1	144621446	.	G	.	.	LowGQX	END=144621457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:38
chr1	144621458	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:38
chr1	144621459	.	C	.	.	LowGQX	END=144621469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:38
chr1	144621470	.	A	.	.	LowGQX	END=144621497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:38
chr1	144621498	.	G	.	.	LowGQX	END=144621502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:41
chr1	144621503	.	T	.	.	LowGQX	END=144621530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:40
chr1	144621531	.	T	.	.	LowGQX	END=144621536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:41
chr1	144621537	.	A	.	.	LowGQX	END=144621545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:44
chr1	144621546	.	A	.	.	LowGQX	END=144621551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:44
chr1	144621552	.	T	.	.	LowGQX	END=144621554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:44
chr1	144621555	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:0:44
chr1	144621556	.	C	.	.	LowGQX	END=144621586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:44
chr1	144621587	.	A	G	27.58	LowGQX;SB	BaseQRankSum=0.480;DP=10;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=44;MQ0=0;MQRankSum=1.271;QD=2.76;ReadPosRankSum=0.000;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:8,2:10:57.56:58,0,179:44:28:0.200
chr1	144621588	.	G	T	24.58	LowGQX;SB	BaseQRankSum=1.271;DP=10;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=44;MQ0=0;MQRankSum=1.271;QD=2.46;ReadPosRankSum=0.000;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:8,2:10:54.56:55,0,207:44:25:0.200
chr1	144621589	.	A	.	.	LowGQX	END=144621604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:41
chr1	144621605	.	T	.	.	LowGQX	END=144621637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:39
chr1	144621638	.	A	.	.	LowGQX	END=144621641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:37
chr1	144621642	.	A	G	78.35	PASS	BaseQRankSum=0.000;DP=9;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=37;MQ0=2;MQRankSum=0.550;QD=8.71;ReadPosRankSum=0.937;SB=-30.13	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:5,4:9:65.63:108,0,66:37:66:0.444
chr1	144621643	.	G	A	78.35	PASS	BaseQRankSum=0.550;DP=9;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=37;MQ0=2;MQRankSum=0.550;QD=8.71;ReadPosRankSum=0.937;SB=-25.55	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:5,4:9:68.81:108,0,69:37:69:0.444
chr1	144621644	.	C	.	.	LowGQX	END=144621656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:36
chr1	144676859	.	A	.	.	LowGQX	END=144677049	GT	./.
chr1	144677239	.	C	.	.	LowGQX	END=144677417	GT	./.
chr1	144679882	.	T	.	.	LowGQX	END=144679981	GT	./.
chr1	144811743	.	C	.	.	LowGQX	END=144811745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:32
chr1	144811746	.	A	.	9.40	LowGQX	DP=5;MQ=34;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.03:34:0
chr1	144811747	.	G	.	.	LowGQX	END=144811757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:35
chr1	144811758	.	C	.	.	LowGQX	END=144811760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:35
chr1	144811761	.	C	.	.	LowGQX	END=144811765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:35
chr1	144811766	.	C	.	.	LowGQX	END=144811768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:35
chr1	144811769	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:35
chr1	144811770	.	C	.	.	LowGQX	END=144811771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:35
chr1	144811772	.	C	.	.	LowGQX	END=144811773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:35
chr1	144811774	.	A	.	.	LowGQX	END=144811775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:35
chr1	144811776	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:35
chr1	144811777	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:35
chr1	144811778	.	T	.	.	LowGQX	END=144811780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:35
chr1	144811781	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:35
chr1	144811782	.	C	.	.	LowGQX	END=144811789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:35
chr1	144811790	.	T	.	.	LowGQX	END=144811791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:35
chr1	144811792	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:35
chr1	144811793	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:35
chr1	144811794	.	A	.	.	LowGQX	END=144811799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:35
chr1	144811800	.	C	.	.	LowGQX	END=144811801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:37
chr1	144811802	.	C	.	.	LowGQX	END=144811804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:37
chr1	144811805	.	T	.	4.56	LowGQX	DP=5;MQ=37;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.01:37:0
chr1	144811806	.	G	.	.	LowGQX	END=144811807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:37
chr1	144811808	.	C	.	.	LowGQX	END=144811809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:37
chr1	144811810	.	A	G	30.44	SB	BaseQRankSum=0.720;DP=6;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=4.7611;MQ=37;MQ0=0;MQRankSum=1.380;QD=5.07;ReadPosRankSum=0.720;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:4,2:6:60.43:60,0,70:37:30:0.333
chr1	144811811	.	G	.	.	LowGQX	END=144811819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:37
chr1	144811820	.	C	.	.	LowGQX	END=144811822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:37
chr1	144811823	.	A	C	30.61	SB	BaseQRankSum=0.922;DP=7;Dels=0.00;FS=3.979;HRun=0;HaplotypeScore=6.7053;MQ=41;MQ0=0;MQRankSum=0.198;QD=4.37;ReadPosRankSum=1.495;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:5,2:7:60.60:61,0,111:41:31:0.286
chr1	144811824	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:41
chr1	144811825	.	A	.	38.99	LowGQX	DP=7;MQ=41;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:7:9:41:9
chr1	144811826	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:41
chr1	144811827	.	G	.	4.56	LowGQX	DP=6;MQ=41;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:6:0.01:41:0
chr1	144811828	.	A	.	.	LowGQX	END=144811832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:41
chr1	144811833	.	T	.	.	LowGQX	END=144811834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:41
chr1	144811835	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:41
chr1	144811836	.	G	A	103.93	LowGQ;LowGQX	DP=6;Dels=0.17;FS=0.000;HRun=0;HaplotypeScore=2.8799;MQ=41;MQ0=0;QD=17.32;SB=-35.68	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,5:5:12.01:136,12,0:41:12:1.000
chr1	144811837	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:41
chr1	144811838	.	A	.	.	LowGQX	END=144811841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:39
chr1	144811842	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:41
chr1	144811843	.	A	.	.	LowGQX	END=144811845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:41
chr1	144811846	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:41
chr1	144811847	.	A	.	.	LowGQX	END=144811852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:41
chr1	144811853	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:41
chr1	144811854	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:41
chr1	144811855	.	C	.	.	LowGQX	END=144811856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:41
chr1	144811857	.	C	.	.	LowGQX	END=144811859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:40
chr1	144811860	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:40
chr1	144811861	.	C	.	.	LowGQX	END=144811866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:40
chr1	144811867	.	G	.	.	LowGQX	END=144811868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:40
chr1	144811869	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:40
chr1	144811870	.	G	.	.	LowGQX	END=144811874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:40
chr1	144811875	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:41
chr1	144811876	.	A	.	.	LowGQX	END=144811905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:41
chr1	144811906	.	T	.	.	LowGQX	END=144811907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:44
chr1	144811908	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:1:44
chr1	144811909	.	T	.	.	LowGQX	END=144811910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:44
chr1	144811911	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:44
chr1	144811912	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:3:44
chr1	144811913	.	T	.	.	LowGQX	END=144811915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:44
chr1	144811916	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:44
chr1	144811917	.	T	.	.	LowGQX	END=144811921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:44
chr1	144811922	.	T	.	.	LowGQX	END=144811923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:44
chr1	144811924	.	T	G	171.23	LowGQ;LowGQX;SB	DP=7;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=44;MQ0=0;QD=24.46;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,7:7:18.03:204,18,0:44:18:1.000
chr1	144811925	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:44
chr1	144811926	.	C	.	.	LowGQX	END=144811927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:44
chr1	144811928	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:44
chr1	144811929	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:44
chr1	144811930	.	T	.	.	LowGQX	END=144811931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:44
chr1	144811932	.	C	.	.	LowGQX	END=144811934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:44
chr1	144811935	.	G	.	.	LowGQX	END=144811936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:44
chr1	144811937	.	C	.	.	LowGQX	END=144811952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:44
chr1	144811953	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:1:44
chr1	144811954	.	T	.	.	LowGQX	END=144811957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:44
chr1	144813741	.	G	.	.	PASS	END=144813751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:54:46
chr1	144813752	.	G	.	.	PASS	END=144813834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:54:43
chr1	144813835	.	A	.	.	PASS	END=144813844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:51:44
chr1	144814679	.	G	.	.	PASS	END=144814704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:30:47
chr1	144814705	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:27:46
chr1	144814706	.	A	.	.	PASS	END=144814753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:30:38
chr1	144814754	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:27:38
chr1	144814755	.	T	.	.	PASS	END=144814762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:30:38
chr1	144814763	.	G	.	.	PASS	END=144814784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:36:35
chr1	144814785	.	G	.	.	PASS	END=144814789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:30:33
chr1	144814790	.	T	.	.	PASS	END=144814798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:33:29
chr1	144814799	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:30:29
chr1	144814800	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:11:30
chr1	144814801	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:3:30
chr1	144814802	.	A	.	.	PASS	END=144814814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:30:29
chr1	144814815	.	G	.	.	LowGQX	END=144814816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:24:29
chr1	144814817	.	C	.	.	PASS	END=144814818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:30:29
chr1	144814819	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:24:29
chr1	144814820	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:30:29
chr1	144814821	.	G	.	.	LowGQX	END=144814825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:24:28
chr1	144814826	.	A	.	.	PASS	END=144814828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:29
chr1	144814829	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:30
chr1	144814830	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:30
chr1	144814831	.	C	.	.	LowGQX	END=144814832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:24:29
chr1	144814833	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:30
chr1	144814834	.	C	.	.	LowGQX	END=144814835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:24:30
chr1	144814836	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:30
chr1	144814837	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:30
chr1	144814838	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:30
chr1	144814839	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:30
chr1	144814840	.	C	.	.	PASS	END=144814841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:30
chr1	144814842	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:30
chr1	144814843	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:30
chr1	144814844	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:30
chr1	144814845	.	G	.	.	PASS	END=144814846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:30
chr1	144814847	.	C	.	.	LowGQX	END=144814848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:27:30
chr1	144814849	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:30
chr1	144814850	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:30
chr1	144814851	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:30
chr1	144814852	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:24:30
chr1	144814853	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:30
chr1	144814854	.	G	.	.	LowGQX	END=144814856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:24:30
chr1	144814857	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:30
chr1	144814858	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:30
chr1	144814859	.	G	.	.	PASS	END=144814861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:30
chr1	144814862	.	T	.	.	LowGQX	END=144814865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:32
chr1	144814866	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:15:32
chr1	144814867	.	C	.	.	LowGQX	END=144814872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:32
chr1	144814873	.	C	.	.	LowGQX	END=144814894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:31
chr1	144815922	.	T	.	.	LowGQX	END=144815963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:43
chr1	144815964	.	T	.	.	LowGQX	END=144815997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:41
chr1	144815998	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:41
chr1	144815999	.	C	.	.	LowGQX	END=144816011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:41
chr1	144816012	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:41
chr1	144816013	.	C	.	.	LowGQX	END=144816021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:41
chr1	144816472	.	G	.	.	LowGQX	END=144816476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:40
chr1	144816477	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:1:41
chr1	144816478	.	T	.	.	LowGQX	END=144816504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:41
chr1	144816505	.	C	.	.	PASS	END=144816507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:43
chr1	144816508	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:43
chr1	144816509	.	G	.	.	PASS	END=144816510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:43
chr1	144816511	.	A	.	.	LowGQX	END=144816512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:43
chr1	144816513	.	T	.	.	PASS	END=144816518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:43
chr1	144816519	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:43
chr1	144816520	.	A	.	.	PASS	END=144816523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:43
chr1	144816524	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:43
chr1	144816525	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:43
chr1	144816526	.	G	.	.	LowGQX	END=144816533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:43
chr1	144816534	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:45
chr1	144816535	.	C	.	.	LowGQX	END=144816536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:45
chr1	144816537	.	T	.	.	PASS	END=144816538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:45
chr1	144816539	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:45
chr1	144816540	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:45
chr1	144816541	.	C	.	.	LowGQX	END=144816548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:45
chr1	144816549	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:45
chr1	144816550	.	A	.	.	LowGQX	END=144816551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:45
chr1	144816552	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:45
chr1	144816553	.	G	.	.	LowGQX	END=144816554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:45
chr1	144816555	.	C	.	51.06	LowGQX	DP=13;MQ=45;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:10:13:21.07:45:21
chr1	144816556	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:45
chr1	144816557	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:45
chr1	144816558	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:45
chr1	144816559	.	A	.	.	LowGQX	END=144816564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:45
chr1	144816565	.	C	.	.	PASS	END=144816566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:45
chr1	144816567	.	A	.	.	LowGQX	END=144816568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:45
chr1	144816569	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:45
chr1	144816570	.	C	.	.	LowGQX	END=144816573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:45
chr1	144816574	.	C	.	.	LowGQX	END=144816575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:18:46
chr1	144816576	.	C	.	.	LowGQX	END=144816577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:46
chr1	144816578	.	T	.	.	LowGQX	END=144816585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:47
chr1	144816586	.	C	.	.	LowGQX	END=144816597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:47
chr1	144816598	.	T	.	.	LowGQX	END=144816599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:47
chr1	144816600	.	G	.	.	LowGQX	END=144816601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:47
chr1	144816602	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:47
chr1	144816603	.	G	.	.	LowGQX	END=144816608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:47
chr1	144816609	.	A	.	.	LowGQX	END=144816624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:50
chr1	144816625	.	T	.	.	LowGQX	END=144816648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:55
chr1	144816649	.	A	.	.	LowGQX	END=144816659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:54
chr1	144816660	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:54
chr1	144816661	.	C	.	.	LowGQX	END=144816663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:54
chr1	144816664	.	T	.	39.02	LowGQX	DP=4;MQ=54;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:54:9
chr1	144816665	.	A	.	.	LowGQX	END=144816678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:54
chr1	144817882	.	C	.	.	PASS	END=144817895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:69:37
chr1	144817896	.	G	.	.	PASS	END=144817939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:69:31
chr1	144817940	.	A	.	.	PASS	END=144818014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:63:24
chr1	144818015	.	C	.	.	PASS	END=144818026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:51:20
chr1	144818027	.	T	.	.	LowMQ	END=144818039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:36:14
chr1	144818040	.	T	.	.	LowMQ	END=144818041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:30:14
chr1	144821920	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:39
chr1	144821921	.	G	.	.	PASS	END=144821923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:39
chr1	144821924	.	T	.	.	PASS	END=144821945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:39
chr1	144821946	.	G	.	.	PASS	END=144822006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:42
chr1	144822007	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:42:43
chr1	144822008	.	G	.	.	PASS	END=144822070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:39
chr1	144822071	.	T	.	.	PASS	END=144822083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:37
chr1	144822084	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:42:36
chr1	144823104	.	G	.	.	LowGQX	END=144823105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:15:39
chr1	144823106	.	G	.	.	LowGQX	END=144823124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:39
chr1	144823125	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:15:37
chr1	144823126	.	A	.	.	LowGQX	END=144823151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:18:35
chr1	144823152	.	A	.	.	LowGQX	END=144823156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:35
chr1	144823157	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:18:34
chr1	144823158	.	A	.	.	LowGQX	END=144823167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:21:34
chr1	144823168	.	A	.	.	LowGQX	END=144823170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:18:34
chr1	144823171	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:34
chr1	144823172	.	G	.	.	LowGQX	END=144823181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:18:33
chr1	144823182	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:15:32
chr1	144823183	.	A	.	.	LowGQX	END=144823187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:18:30
chr1	144823188	.	G	.	.	LowGQX	END=144823195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:15:26
chr1	144823196	.	G	.	.	LowGQX	END=144823198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:9:27
chr1	144823199	.	G	.	.	LowGQX	END=144823203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:12:27
chr1	144823812	.	G	.	.	LowGQX	END=144823840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:29
chr1	144823841	.	G	.	.	LowGQX	.	GT	./.
chr1	144823842	.	G	.	.	LowGQX	END=144823895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:33
chr1	144823896	.	G	.	.	LowGQX	END=144823929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:26
chr1	144823930	.	A	.	.	LowGQX;LowMQ	END=144823931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:18
chr1	144823932	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	144823933	.	T	.	.	LowGQX;LowMQ	END=144823934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:18
chr1	144823935	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	144823936	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:4:3:18
chr1	144823937	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	144823938	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:4:3:18
chr1	144823939	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	144823940	.	T	.	.	LowGQX;LowMQ	END=144823941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:18
chr1	144823942	.	C	.	33	LowGQX;LowMQ	DP=4;MQ=18;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:2:4:3.01:18:3
chr1	144823943	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:4:3:18
chr1	144823944	.	T	.	.	LowGQX	END=144823976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:21
chr1	144823977	.	A	.	33.01	LowGQX	DP=5;MQ=21;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:21:3
chr1	144823978	.	C	.	.	LowGQX	END=144823985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:21
chr1	144824681	.	T	.	.	LowGQX	END=144824686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:43
chr1	144824687	.	T	.	.	LowGQX	END=144824720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:18:33
chr1	144824721	.	A	.	.	LowGQX	END=144824740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:15:33
chr1	144824741	.	A	.	.	LowGQX	END=144824742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:12:33
chr1	144824743	.	C	.	.	LowGQX	END=144824744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:18:33
chr1	144824745	.	A	.	.	LowGQX	END=144824746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:12:33
chr1	144824747	.	C	.	.	LowGQX	END=144824754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:15:32
chr1	144824755	.	A	.	.	LowGQX	END=144824761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:12:32
chr1	144824762	.	T	.	.	LowGQX	END=144824768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:15:35
chr1	144824769	.	A	.	.	LowGQX	END=144824780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:12:29
chr1	144825352	.	G	.	.	LowGQX	END=144825358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:38
chr1	144825359	.	C	.	.	LowGQX	END=144825370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:40
chr1	144825371	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:9:40
chr1	144825372	.	G	.	.	LowGQX	END=144825382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:40
chr1	144825383	.	G	.	.	LowGQX	END=144825385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:42
chr1	144825386	.	T	.	.	LowGQX	END=144825401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:42
chr1	144825402	.	T	.	.	LowGQX	END=144825404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:42
chr1	144825405	.	C	.	.	LowGQX	END=144825419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:42
chr1	144825420	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:9:42
chr1	144825421	.	C	.	.	LowGQX	END=144825446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:42
chr1	144825447	.	C	.	.	LowGQX	END=144825470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:43
chr1	144825471	.	A	.	.	LowGQX	END=144825511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:41
chr1	144825512	.	T	.	.	LowGQX	END=144825518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:44
chr1	144825519	.	T	.	33	LowGQX	DP=3;MQ=44;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:44:3
chr1	144825520	.	T	.	.	LowGQX	END=144825525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:44
chr1	144825676	.	C	.	.	LowGQX	END=144825715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	144825716	.	G	.	.	LowGQX	END=144825717	GT	./.
chr1	144825718	.	C	.	.	LowGQX;LowMQ	END=144825835	GT	./.
chr1	144826211	.	T	.	.	LowGQX	END=144826263	GT	./.
chr1	144826264	.	G	.	.	LowGQX;LowMQ	END=144826310	GT	./.
chr1	144826932	.	G	.	.	LowGQX;LowMQ	END=144827130	GT	./.
chr1	144827768	.	G	.	.	LowGQX;LowMQ	END=144827928	GT	./.
chr1	144828540	.	G	.	.	LowGQX	END=144828549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:55
chr1	144828550	.	C	.	.	LowGQX	END=144828560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:53
chr1	144828561	.	A	.	.	LowGQX	END=144828577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:51
chr1	144828578	.	G	.	.	LowGQX	END=144828595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:50
chr1	144828596	.	G	.	.	LowGQX	END=144828623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:44
chr1	144828624	.	A	.	.	LowGQX	END=144828685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:36
chr1	144828686	.	C	.	.	LowGQX	END=144828728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:43
chr1	144828729	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:43
chr1	144828730	.	G	.	.	LowGQX	END=144828764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:40
chr1	144828765	.	A	.	10.85	LowGQX	DP=6;MQ=40;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:3:6:0.05:40:0
chr1	144828766	.	A	.	.	LowGQX	END=144828782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:40
chr1	144828783	.	A	.	.	LowGQX	END=144828784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:44
chr1	144852349	.	G	.	.	LowGQX	END=144852528	GT	./.
chr1	144854139	.	T	.	.	LowGQX	END=144854192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	144854193	.	A	.	.	LowGQX	END=144854238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	144854516	.	A	.	.	LowGQX	END=144854658	GT	./.
chr1	144855738	.	A	.	.	LowGQX	END=144855811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144855812	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	144855813	.	G	.	.	LowGQX	END=144855818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144855819	.	T	.	.	LowGQX	.	GT	./.
chr1	144855820	.	C	.	.	LowGQX	END=144855825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144855826	.	C	.	.	LowGQX	END=144855885	GT	./.
chr1	144856814	.	A	.	.	LowGQX	END=144857018	GT	./.
chr1	144857019	.	C	.	.	LowGQX	END=144857044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144857610	.	A	.	.	LowGQX	END=144857730	GT	./.
chr1	144859757	.	A	.	.	LowGQX	END=144859867	GT	./.
chr1	144859868	.	C	.	.	LowGQX	END=144859931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144859932	.	A	.	.	LowGQX	.	GT	./.
chr1	144859933	.	C	.	.	LowGQX	END=144860000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144863316	.	A	.	.	LowGQX	END=144863379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:54
chr1	144863380	.	G	.	.	LowGQX	END=144863444	GT	./.
chr1	144864131	.	T	.	.	LowGQX	END=144864326	GT	./.
chr1	144865808	.	A	.	.	LowGQX	END=144865822	GT	./.
chr1	144865823	.	A	.	.	LowGQX	END=144865931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144866590	.	A	.	.	LowGQX	END=144866725	GT	./.
chr1	144867919	.	A	.	.	LowGQX	END=144868136	GT	./.
chr1	144868137	.	A	.	.	LowGQX	END=144868174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144871694	.	A	.	.	LowGQX	END=144871717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144871718	.	C	.	.	LowGQX	END=144871883	GT	./.
chr1	144873875	.	A	.	.	LowGQX	END=144874031	GT	./.
chr1	144874679	.	A	.	.	LowGQX	END=144874895	GT	./.
chr1	144874896	.	C	.	.	LowGQX	END=144874906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144875953	.	T	.	.	LowGQX	END=144875998	GT	./.
chr1	144875999	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144876000	.	A	.	.	LowGQX	.	GT	./.
chr1	144876001	.	G	.	.	LowGQX	END=144876007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144876008	.	C	.	.	LowGQX	.	GT	./.
chr1	144876009	.	T	.	.	LowGQX	END=144876015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144876016	.	C	.	.	LowGQX	END=144876017	GT	./.
chr1	144876018	.	T	.	.	LowGQX	END=144876052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144877034	.	A	.	.	LowGQX	END=144877059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144877060	.	T	.	.	LowGQX	.	GT	./.
chr1	144877061	.	C	.	.	LowGQX	END=144877243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	144877244	.	C	.	.	LowGQX	END=144877273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879033	.	A	.	.	LowGQX	END=144879050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879051	.	A	.	.	LowGQX	.	GT	./.
chr1	144879052	.	T	.	.	LowGQX	END=144879063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879064	.	A	.	.	LowGQX	.	GT	./.
chr1	144879065	.	G	.	.	LowGQX	END=144879075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879076	.	T	.	.	LowGQX	.	GT	./.
chr1	144879077	.	T	.	.	LowGQX	END=144879081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	144879082	.	T	.	.	LowGQX	.	GT	./.
chr1	144879083	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	144879084	.	C	.	.	LowGQX	.	GT	./.
chr1	144879085	.	A	.	.	LowGQX	END=144879097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	144879098	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	144879099	.	G	.	.	LowGQX	END=144879104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	144879105	.	C	.	.	LowGQX	.	GT	./.
chr1	144879106	.	C	.	.	LowGQX	END=144879115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879116	.	A	.	.	LowGQX	.	GT	./.
chr1	144879117	.	C	.	.	LowGQX	END=144879119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879120	.	T	.	.	LowGQX	.	GT	./.
chr1	144879121	.	C	.	.	LowGQX	END=144879125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879126	.	T	.	.	LowGQX	END=144879128	GT	./.
chr1	144879129	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879130	.	A	.	.	LowGQX	.	GT	./.
chr1	144879131	.	C	.	.	LowGQX	END=144879139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879140	.	T	.	.	LowGQX	.	GT	./.
chr1	144879141	.	C	.	.	LowGQX	END=144879142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879143	.	T	.	.	LowGQX	.	GT	./.
chr1	144879144	.	T	.	.	LowGQX	END=144879157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879158	.	C	.	.	LowGQX	.	GT	./.
chr1	144879159	.	C	.	.	LowGQX	END=144879177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879178	.	A	.	.	LowGQX	.	GT	./.
chr1	144879179	.	G	.	.	LowGQX	END=144879188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879189	.	A	.	.	LowGQX	.	GT	./.
chr1	144879190	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879191	.	A	.	.	LowGQX	END=144879192	GT	./.
chr1	144879193	.	C	.	.	LowGQX	END=144879201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879202	.	A	.	.	LowGQX	.	GT	./.
chr1	144879203	.	T	.	.	LowGQX	END=144879207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879208	.	A	.	.	LowGQX	.	GT	./.
chr1	144879209	.	T	.	.	LowGQX	END=144879214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879215	.	A	.	.	LowGQX	.	GT	./.
chr1	144879216	.	C	.	.	LowGQX	END=144879263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879264	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	144879265	.	G	.	.	LowGQX	END=144879276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879277	.	A	.	.	LowGQX	.	GT	./.
chr1	144879278	.	C	.	.	LowGQX	END=144879313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879314	.	A	.	.	LowGQX	.	GT	./.
chr1	144879315	.	C	.	.	LowGQX	END=144879337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879338	.	A	.	.	LowGQX	.	GT	./.
chr1	144879339	.	C	.	.	LowGQX	END=144879369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879370	.	A	.	.	LowGQX	END=144879371	GT	./.
chr1	144879372	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879373	.	T	.	.	LowGQX	END=144879374	GT	./.
chr1	144879375	.	T	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	144879376	.	G	.	.	LowGQX	END=144879379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879380	.	T	.	.	LowGQX	.	GT	./.
chr1	144879381	.	C	.	.	LowGQX	END=144879384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879385	.	T	.	.	LowGQX	.	GT	./.
chr1	144879386	.	C	.	.	LowGQX	END=144879387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879388	.	T	.	.	LowGQX	END=144879390	GT	./.
chr1	144879391	.	G	.	.	LowGQX	END=144879397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879398	.	A	.	.	LowGQX	.	GT	./.
chr1	144879399	.	T	.	.	LowGQX	END=144879400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879401	.	T	.	.	LowGQX	.	GT	./.
chr1	144879402	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879403	.	T	.	.	LowGQX	END=144879404	GT	./.
chr1	144879405	.	C	.	.	LowGQX	END=144879409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879410	.	T	.	.	LowGQX	.	GT	./.
chr1	144879411	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879412	.	T	.	.	LowGQX	.	GT	./.
chr1	144879413	.	C	.	.	LowGQX	END=144879429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879430	.	T	.	.	LowGQX	.	GT	./.
chr1	144879431	.	T	.	.	LowGQX	END=144879436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879437	.	T	.	.	LowGQX	END=144879438	GT	./.
chr1	144879439	.	C	.	.	LowGQX	END=144879441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879442	.	T	.	.	LowGQX	END=144879443	GT	./.
chr1	144879444	.	G	.	.	LowGQX	END=144879445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879446	.	T	.	.	LowGQX	.	GT	./.
chr1	144879447	.	G	.	.	LowGQX	END=144879448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879449	.	T	.	.	LowGQX	END=144879450	GT	./.
chr1	144879451	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879452	.	T	.	.	LowGQX	.	GT	./.
chr1	144879453	.	C	.	.	LowGQX	END=144879460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879461	.	T	.	.	LowGQX	.	GT	./.
chr1	144879462	.	T	.	.	LowGQX	END=144879503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144879504	.	G	.	.	LowGQX	END=144879565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:56
chr1	144880740	.	A	.	.	LowGQX	END=144880863	GT	./.
chr1	144881428	.	A	.	.	LowGQX	END=144881433	GT	./.
chr1	144881434	.	C	.	.	LowGQX	END=144881436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144881437	.	A	.	.	LowGQX	.	GT	./.
chr1	144881438	.	A	.	.	LowGQX	END=144881445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144881446	.	T	.	.	LowGQX	.	GT	./.
chr1	144881447	.	T	.	.	LowGQX	END=144881453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144881454	.	G	.	.	LowGQX	.	GT	./.
chr1	144881455	.	C	.	.	LowGQX	END=144881462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144881463	.	C	.	.	LowGQX	.	GT	./.
chr1	144881464	.	C	.	.	LowGQX	END=144881558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144881559	.	T	.	.	LowGQX	.	GT	./.
chr1	144881560	.	G	.	.	LowGQX	END=144881584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144881585	.	T	.	.	LowGQX	END=144881624	GT	./.
chr1	144882444	.	A	.	.	LowGQX	END=144882883	GT	./.
chr1	144886095	.	A	.	.	LowGQX	END=144886096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	144886097	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	144886098	.	T	.	.	LowGQX	END=144886111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	144886112	.	G	.	.	LowGQX	END=144886114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	144886115	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	144886116	.	A	.	.	LowGQX	END=144886127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	144886128	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	144886129	.	C	.	.	LowGQX	END=144886161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	144886162	.	C	A	9.29	LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=3.10;ReadPosRankSum=0.736;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr1	144886163	.	T	.	.	LowGQX	END=144886191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144886192	.	G	.	.	LowGQX	.	GT	./.
chr1	144886193	.	T	.	.	LowGQX	END=144886196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144886197	.	A	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	144886198	.	C	.	.	LowGQX	END=144886212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144886213	.	G	.	.	LowGQX	.	GT	./.
chr1	144886214	.	A	.	.	LowGQX	END=144886241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144886242	.	T	.	.	LowGQX	END=144886331	GT	./.
chr1	144890934	.	A	.	.	LowGQX	END=144890936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144890937	.	T	.	.	LowGQX	END=144891033	GT	./.
chr1	144892167	.	C	.	.	LowGQX	END=144892266	GT	./.
chr1	144892437	.	A	.	.	LowGQX	END=144892567	GT	./.
chr1	144892568	.	G	.	.	LowGQX	END=144892591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144895220	.	A	.	.	LowGQX	END=144895319	GT	./.
chr1	144903029	.	C	.	.	LowGQX	END=144903206	GT	./.
chr1	144904623	.	A	.	.	LowGQX	END=144904696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:45
chr1	144904697	.	C	.	.	LowGQX	END=144904739	GT	./.
chr1	144906057	.	A	.	.	LowGQX	END=144906198	GT	./.
chr1	144906419	.	A	.	.	LowGQX	END=144906539	GT	./.
chr1	144909865	.	T	.	.	LowGQX	END=144909964	GT	./.
chr1	144911873	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144911874	.	A	.	.	LowGQX	.	GT	./.
chr1	144911875	.	T	.	.	LowGQX	END=144911886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144911887	.	G	.	.	LowGQX	END=144911888	GT	./.
chr1	144911889	.	G	.	.	LowGQX	END=144911892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144911893	.	C	.	.	LowGQX	.	GT	./.
chr1	144911894	.	T	.	.	LowGQX	END=144911897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144911898	.	T	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	144911899	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144911900	.	T	.	.	LowGQX	.	GT	./.
chr1	144911901	.	G	.	.	LowGQX	END=144911906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144911907	.	A	.	.	LowGQX	.	GT	./.
chr1	144911908	.	T	.	.	LowGQX	END=144911920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144911921	.	T	.	.	LowGQX	.	GT	./.
chr1	144911922	.	C	.	.	LowGQX	END=144911929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144911930	.	T	.	.	LowGQX	.	GT	./.
chr1	144911931	.	G	.	.	LowGQX	END=144911953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144911954	.	G	.	.	LowGQX	END=144911959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	144911960	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	144911961	.	A	.	.	LowGQX	END=144911962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	144911963	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	144911964	.	C	.	.	LowGQX	END=144911972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	144912128	.	A	.	.	LowGQX	END=144912130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144912131	.	T	.	.	LowGQX	END=144912137	GT	./.
chr1	144912138	.	T	.	.	LowGQX	END=144912141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144912142	.	T	.	.	LowGQX	.	GT	./.
chr1	144912143	.	T	.	.	LowGQX	END=144912147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144912148	.	A	.	.	LowGQX	END=144912149	GT	./.
chr1	144912150	.	G	.	.	LowGQX	END=144912152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144912153	.	A	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	144912154	.	G	.	.	LowGQX	END=144912158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144912159	.	T	.	.	LowGQX	.	GT	./.
chr1	144912160	.	G	.	.	LowGQX	END=144912166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144912167	.	A	.	.	LowGQX	.	GT	./.
chr1	144912168	.	C	.	.	LowGQX	END=144912169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144912170	.	T	.	.	LowGQX	.	GT	./.
chr1	144912171	.	C	.	.	LowGQX	END=144912178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144912179	.	T	.	.	LowGQX	.	GT	./.
chr1	144912180	.	G	.	.	LowGQX	END=144912191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144912192	.	G	.	.	LowGQX	.	GT	./.
chr1	144912193	.	T	.	.	LowGQX	END=144912195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144912196	.	T	.	.	LowGQX	.	GT	./.
chr1	144912197	.	T	.	.	LowGQX	END=144912236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144912237	.	G	.	.	LowGQX	.	GT	./.
chr1	144912238	.	G	.	.	LowGQX	END=144912241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144912242	.	T	.	.	LowGQX	.	GT	./.
chr1	144912243	.	G	.	.	LowGQX	END=144912266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144912267	.	A	.	.	LowGQX	.	GT	./.
chr1	144912268	.	G	.	.	LowGQX	END=144912286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144912287	.	G	.	.	LowGQX	END=144912296	GT	./.
chr1	144915443	.	A	.	.	LowGQX	END=144915641	GT	./.
chr1	144916568	.	G	.	.	LowGQX	END=144916593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	144916594	.	A	.	.	LowGQX	.	GT	./.
chr1	144916595	.	A	.	.	LowGQX	END=144916607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	144916608	.	A	.	.	LowGQX	.	GT	./.
chr1	144916609	.	C	.	.	LowGQX	END=144916636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	144916637	.	T	.	.	LowGQX	.	GT	./.
chr1	144916638	.	G	.	.	LowGQX	END=144916657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	144916658	.	T	.	.	LowGQX	.	GT	./.
chr1	144916659	.	C	.	.	LowGQX	END=144916717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144916718	.	A	.	.	LowGQX	END=144916751	GT	./.
chr1	144917497	.	A	.	.	LowGQX	END=144917499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144917500	.	T	.	.	LowGQX	END=144917626	GT	./.
chr1	144917627	.	C	.	.	LowGQX	END=144917638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144917817	.	A	.	.	LowGQX	END=144917912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	144917913	.	T	.	.	LowGQX	END=144917934	GT	./.
chr1	144918831	.	A	.	.	LowGQX	END=144918993	GT	./.
chr1	144921833	.	A	.	.	LowGQX	END=144921836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	144921837	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	144921838	.	G	.	.	LowGQX	END=144921852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	144921853	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	144921854	.	G	.	.	LowGQX	END=144921898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	144921899	.	T	.	.	LowGQX	.	GT	./.
chr1	144921900	.	G	.	.	LowGQX	END=144921903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144921904	.	A	.	.	LowGQX	.	GT	./.
chr1	144921905	.	C	.	.	LowGQX	END=144921913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144921914	.	G	.	.	LowGQX	.	GT	./.
chr1	144921915	.	C	.	.	LowGQX	END=144921916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144921917	.	T	.	.	LowGQX	.	GT	./.
chr1	144921918	.	C	.	.	LowGQX	END=144921921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144921922	.	C	.	.	LowGQX	.	GT	./.
chr1	144921923	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144921924	.	G	.	.	LowGQX	.	GT	./.
chr1	144921925	.	T	.	.	LowGQX	END=144921931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144921932	.	T	.	.	LowGQX	.	GT	./.
chr1	144921933	.	C	.	.	LowGQX	END=144921944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144921945	.	C	.	.	LowGQX	.	GT	./.
chr1	144921946	.	C	.	.	LowGQX	END=144921948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144921949	.	C	.	.	LowGQX	END=144921950	GT	./.
chr1	144921951	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144921952	.	C	.	.	LowGQX	.	GT	./.
chr1	144921953	.	T	.	.	LowGQX	END=144921954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144921955	.	G	.	.	LowGQX	.	GT	./.
chr1	144921956	.	A	.	.	LowGQX	END=144921968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144921969	.	C	.	.	LowGQX	.	GT	./.
chr1	144921970	.	A	.	.	LowGQX	END=144921973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144921974	.	T	.	.	LowGQX	.	GT	./.
chr1	144921975	.	G	.	.	LowGQX	END=144921979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144921980	.	C	.	.	LowGQX	END=144921981	GT	./.
chr1	144921982	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144921983	.	A	.	.	LowGQX	.	GT	./.
chr1	144921984	.	A	.	.	LowGQX	END=144921990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144921991	.	A	.	.	LowGQX	.	GT	./.
chr1	144921992	.	C	.	.	LowGQX	END=144921994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144921995	.	T	.	.	LowGQX	END=144922049	GT	./.
chr1	144922184	.	T	.	.	LowGQX	END=144922283	GT	./.
chr1	144922517	.	A	.	.	LowGQX	END=144922582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144922583	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	144922584	.	A	.	.	LowGQX	END=144922605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144922606	.	A	.	.	LowGQX	END=144922640	GT	./.
chr1	144923688	.	A	.	.	LowGQX	END=144923742	GT	./.
chr1	144923743	.	A	.	.	LowGQX	END=144923776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144923777	.	A	.	.	LowGQX	.	GT	./.
chr1	144923778	.	T	.	.	LowGQX	END=144923805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144923806	.	A	.	.	LowGQX	.	GT	./.
chr1	144923807	.	C	.	.	LowGQX	END=144923812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144923813	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	144923814	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144923815	.	T	.	.	LowGQX	.	GT	./.
chr1	144923816	.	C	.	.	LowGQX	END=144923821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144923822	.	C	.	.	LowGQX	END=144923823	GT	./.
chr1	144930572	.	C	.	.	LowGQX	END=144930920	GT	./.
chr1	144930921	.	C	.	.	LowGQX	END=144930960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	144930961	.	G	.	.	LowGQX	.	GT	./.
chr1	144930962	.	G	.	.	LowGQX	END=144930989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	144930990	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	144930991	.	A	.	.	LowGQX	END=144931008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	144931009	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	144931010	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	144931011	.	A	.	.	LowGQX	END=144931044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	144931045	.	C	.	.	LowGQX	.	GT	./.
chr1	144931046	.	T	.	.	LowGQX	END=144931053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	144931054	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	144931055	.	T	.	.	LowGQX	END=144931070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	144931071	.	A	.	.	LowGQX	END=144931711	GT	./.
chr1	144946561	.	A	.	.	LowGQX	END=144946744	GT	./.
chr1	144952000	.	C	.	.	LowGQX	END=144952099	GT	./.
chr1	144952195	.	A	.	.	LowGQX	END=144952236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:48
chr1	144952237	.	G	.	.	LowGQX	END=144952332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:28
chr1	144952333	.	A	.	.	LowGQX;LowMQ	END=144952352	GT	./.
chr1	144952353	.	T	.	.	LowGQX	END=144952378	GT	./.
chr1	144952564	.	A	.	.	LowGQX;LowMQ	END=144952696	GT	./.
chr1	144952697	.	C	.	.	LowGQX	END=144952742	GT	./.
chr1	144955205	.	T	.	.	LowGQX	END=144955304	GT	./.
chr1	144994589	.	A	.	.	LowGQX	END=144994593	GT	./.
chr1	144994594	.	C	.	.	LowGQX	END=144994600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144994601	.	A	.	.	LowGQX	.	GT	./.
chr1	144994602	.	T	.	.	LowGQX	END=144994733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	144994925	.	T	.	.	LowGQX	END=144994960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	144994961	.	G	.	.	LowGQX	.	GT	./.
chr1	144994962	.	G	.	.	LowGQX	END=144995024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145014067	.	G	.	.	LowGQX	END=145014313	GT	./.
chr1	145015838	.	A	.	.	LowGQX	END=145015876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	145015877	.	G	T	33.59	PASS	BaseQRankSum=0.720;DP=6;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-1.380;QD=5.60;ReadPosRankSum=1.380;SB=-30.29	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:4,2:6:63.58:64,0,108:60:34:0.333
chr1	145015878	.	A	.	.	LowGQX	END=145015892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	145015893	.	C	.	.	LowGQX	END=145015906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	145015907	.	C	.	4.58	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.01:60:0
chr1	145015908	.	A	.	.	LowGQX	END=145015952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	145015953	.	A	.	.	LowGQX	END=145015985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	145015986	.	T	.	.	LowGQX	END=145016013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145017942	.	C	.	.	LowGQX	END=145018041	GT	./.
chr1	145021090	.	G	.	.	LowGQX	END=145021166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145021167	.	T	.	.	LowGQX	.	GT	./.
chr1	145021168	.	C	.	.	LowGQX	END=145021173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145021174	.	A	.	.	LowGQX	.	GT	./.
chr1	145021175	.	G	.	.	LowGQX	END=145021179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145021180	.	A	.	.	LowGQX	.	GT	./.
chr1	145021181	.	C	.	.	LowGQX	END=145021189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145038879	.	C	.	.	LowGQX	END=145038920	GT	./.
chr1	145038921	.	T	.	.	LowGQX	END=145038934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145038935	.	T	.	.	LowGQX	.	GT	./.
chr1	145038936	.	T	.	.	LowGQX	END=145038951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145038952	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	145038953	.	T	.	.	LowGQX	END=145038962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145038963	.	A	.	.	LowGQX	.	GT	./.
chr1	145038964	.	C	.	.	LowGQX	END=145038978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145039550	.	C	.	.	LowGQX	END=145039561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145039562	.	C	.	.	LowGQX	END=145039649	GT	./.
chr1	145074962	.	G	.	.	LowGQX	END=145075061	GT	./.
chr1	145075557	.	A	.	.	LowGQX	END=145075590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145075591	.	C	.	.	LowGQX	END=145075604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	145075605	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	145075606	.	G	.	.	LowGQX	END=145075611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	145075612	.	A	.	.	LowGQX	END=145075617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	145075618	.	C	.	.	LowGQX	END=145075640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	145075641	.	T	.	33	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:60:3
chr1	145075642	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	145075643	.	T	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	145075644	.	G	.	.	LowGQX	END=145075672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	145075673	.	C	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	145075674	.	C	.	.	LowGQX	END=145075682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	145075683	.	C	T	84.99	LowGQ;LowGQX	DP=5;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=17.00;SB=-71.47	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,5:5:9.03:117,9,0:60:9:1.000
chr1	145075684	.	C	.	.	LowGQX	END=145075698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	145075699	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	145075700	.	C	.	.	LowGQX	END=145075724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	145075725	.	G	.	.	LowGQX	END=145075753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	145075754	.	T	.	.	LowGQX	END=145075766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	145075767	.	C	.	.	LowGQX	END=145075773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	145075774	.	G	.	.	LowGQX	END=145075812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	145075813	.	C	A	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.358;DP=5;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.358;QD=0.63;ReadPosRankSum=-0.358;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,2:5:30.28:30,0,75:60:3:0.400
chr1	145075814	.	C	.	.	LowGQX	END=145075853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	145075854	.	G	C	6.77	LowGQX;LowQD	BaseQRankSum=-0.358;DP=5;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.358;QD=1.35;ReadPosRankSum=0.358;SB=-30.29	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,2:5:35.74:36,0,75:60:7:0.400
chr1	145075855	.	C	.	.	LowGQX	END=145075860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	145075861	.	A	.	.	LowGQX	END=145075926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145096534	.	G	.	.	LowGQX	END=145096574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145096575	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	145096576	.	G	.	.	LowGQX	END=145096600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	145096601	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	145096602	.	C	.	.	LowGQX	END=145096633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	145103907	.	G	.	.	LowGQX	END=145103913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145103914	.	C	.	.	LowGQX	.	GT	./.
chr1	145103915	.	G	.	.	LowGQX	END=145103945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145103946	.	G	.	.	LowGQX	.	GT	./.
chr1	145103947	.	T	.	.	LowGQX	END=145103960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145103961	.	G	.	.	LowGQX	END=145103967	GT	./.
chr1	145103968	.	G	.	.	LowGQX	END=145104017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145109523	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145109524	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	145109525	.	T	.	.	LowGQX	END=145109684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145112372	.	G	.	.	LowGQX	END=145112374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145112375	.	A	.	.	LowGQX	END=145112519	GT	./.
chr1	145115734	.	G	.	.	LowGQX	END=145115809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145115810	.	A	.	.	LowGQX	END=145115889	GT	./.
chr1	145209106	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:47
chr1	145209107	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:47
chr1	145209108	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:47
chr1	145209109	.	A	.	57.08	LowGQX	DP=15;MQ=50;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:12:15:27.09:50:27
chr1	145209110	.	G	.	.	PASS	END=145209114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:50
chr1	145209115	.	C	.	.	PASS	END=145209116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:50
chr1	145209117	.	T	.	.	PASS	END=145209123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:51
chr1	145209124	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:51
chr1	145209125	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:48:51
chr1	145209126	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:21:51
chr1	145209127	.	C	.	.	PASS	END=145209134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:51
chr1	145209135	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:51
chr1	145209136	.	G	.	.	PASS	END=145209140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:51
chr1	145209141	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:51
chr1	145209142	.	G	.	.	PASS	END=145209146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:51
chr1	145209147	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:53
chr1	145209148	.	C	.	.	PASS	END=145209163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:53
chr1	145209164	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:53
chr1	145209165	.	G	.	.	PASS	END=145209173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:53
chr1	145209174	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:33:53
chr1	145209175	.	G	.	.	PASS	END=145209178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:53
chr1	145209179	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:54
chr1	145209180	.	G	.	.	PASS	END=145209181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:54
chr1	145209182	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:54
chr1	145209183	.	G	.	.	PASS	END=145209186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:54
chr1	145209187	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:24:55
chr1	145209188	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:36:55
chr1	145209189	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:55
chr1	145209190	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:45:56
chr1	145209191	.	G	.	.	PASS	END=145209194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:56
chr1	145209195	.	C	.	.	PASS	END=145209197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:56
chr1	145209198	.	G	.	.	PASS	END=145209200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:56
chr1	145209201	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:45:56
chr1	145209202	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:24:56
chr1	145209203	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:51:57
chr1	145209204	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:57
chr1	145209205	.	C	.	.	PASS	END=145209206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:57
chr1	145209207	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:30:57
chr1	145209208	.	G	.	.	PASS	END=145209210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:57
chr1	145209211	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:27:57
chr1	145209212	.	T	.	.	PASS	END=145209214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:33:57
chr1	145209215	.	G	.	.	PASS	END=145209218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:57
chr1	145209219	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:36:57
chr1	145209220	.	G	.	.	PASS	END=145209223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:57
chr1	145209224	.	T	.	.	PASS	END=145209227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:57
chr1	145209228	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:63:57
chr1	145209229	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:45:57
chr1	145209230	.	G	.	.	PASS	END=145209233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:57
chr1	145209234	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:48:57
chr1	145209235	.	G	.	.	PASS	END=145209241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:58
chr1	145209242	.	G	.	.	PASS	END=145209249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:58
chr1	145209250	.	C	.	.	PASS	END=145209268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:57
chr1	145209269	.	G	.	.	PASS	END=145209286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:58
chr1	145209287	.	C	.	.	PASS	END=145209306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:58
chr1	145209307	.	C	.	.	PASS	END=145209342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:57
chr1	145209343	.	G	.	.	PASS	END=145209349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:58
chr1	145209350	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:125:3:58
chr1	145209351	.	G	.	.	PASS	END=145209365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:58
chr1	145209366	.	A	G	18.64	LowGQX;LowQD;SB	BaseQRankSum=2.253;DP=127;Dels=0.00;FS=12.292;HRun=0;HaplotypeScore=18.0862;MQ=58;MQ0=1;MQRankSum=-5.235;QD=0.15;ReadPosRankSum=0.115;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:114,11:127:48.58:49,0,2469:58:19:0.088
chr1	145209367	.	C	.	.	PASS	END=145209435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:52
chr1	145209436	.	G	.	.	PASS	END=145209445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:52
chr1	145248826	.	A	.	.	LowMQ	END=145248831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:75:16
chr1	145248832	.	C	.	.	LowMQ	END=145248858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:84:16
chr1	145248859	.	G	.	.	LowMQ	END=145248875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:15
chr1	145248876	.	A	G	90.22	LowMQ;LowQD;SB	BaseQRankSum=1.433;DP=265;Dels=0.00;FS=6.640;HRun=0;HaplotypeScore=10.4665;MQ=15;MQ0=208;MQRankSum=0.930;QD=0.34;ReadPosRankSum=0.033;SB=-0.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:215,48:265:99:120,0,1221:15:90:0.183
chr1	145248877	.	T	.	.	LowMQ	END=145248925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:265:99:14
chr1	145273183	.	A	.	.	PASS	END=145273208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:260:99:29
chr1	145273209	.	A	.	.	PASS	END=145273241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:333:99:31
chr1	145273242	.	C	.	.	PASS	END=145273301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:433:99:38
chr1	145273302	.	A	G	1221.27	PASS	BaseQRankSum=2.755;DP=532;Dels=0.00;FS=8.769;HRun=1;HaplotypeScore=41.8708;MQ=49;MQ0=37;MQRankSum=2.104;QD=2.30;ReadPosRankSum=0.163;SB=-624.09	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:444,88:532:99:1251,0,9517:49:99:0.165
chr1	145273303	.	T	.	.	PASS	END=145273344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:506:99:49
chr1	145273345	.	T	C	1208.13	PASS	BaseQRankSum=-0.610;DP=506;Dels=0.00;FS=18.146;HRun=1;HaplotypeScore=27.6166;MQ=55;MQ0=2;MQRankSum=2.162;QD=2.39;ReadPosRankSum=1.817;SB=-614.33	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:416,89:506:99:1238,0,10867:55:99:0.176
chr1	145273346	.	C	.	.	PASS	END=145273380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:398:99:55
chr1	145273381	.	G	.	.	PASS	END=145273404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:299:99:58
chr1	145273405	.	C	.	.	PASS	END=145273419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:246:99:57
chr1	145273420	.	T	.	.	PASS	END=145273446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:55
chr1	145281367	.	A	.	.	PASS	END=145281383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:52
chr1	145281384	.	G	.	.	PASS	END=145281400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:54
chr1	145281401	.	T	.	.	PASS	END=145281407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:53
chr1	145281408	.	C	T	451.33	PASS	BaseQRankSum=2.389;DP=223;Dels=0.00;FS=2.576;HRun=0;HaplotypeScore=18.2024;MQ=53;MQ0=0;MQRankSum=-1.356;QD=2.02;ReadPosRankSum=0.923;SB=-252.08	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:189,34:223:99:481,0,4776:53:99:0.152
chr1	145281409	.	C	.	.	PASS	END=145281443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:52
chr1	145281444	.	A	.	.	PASS	END=145281486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:285:99:53
chr1	145281487	.	G	.	.	PASS	END=145281534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:300:99:54
chr1	145281535	.	T	.	.	PASS	END=145281542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:274:99:54
chr1	145281543	.	C	T	1507.30	PASS	BaseQRankSum=1.885;DP=274;Dels=0.00;FS=0.518;HRun=0;HaplotypeScore=30.4591;MQ=54;MQ0=2;MQRankSum=2.544;QD=5.50;ReadPosRankSum=3.058;SB=-879.46	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:197,76:274:99:1537,0,4425:54:99:0.278
chr1	145281544	.	C	.	.	PASS	END=145281580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:55
chr1	145281581	.	C	.	.	PASS	END=145281604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:57
chr1	145281605	.	T	.	.	PASS	END=145281612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:57
chr1	145281613	.	C	A	196.17	LowQD	BaseQRankSum=3.613;DP=128;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=16.3016;MQ=57;MQ0=0;MQRankSum=0.679;QD=1.53;ReadPosRankSum=1.551;SB=-100.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:108,19:128:99:226,0,2956:57:99:0.150
chr1	145281614	.	C	.	.	PASS	END=145281630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:55
chr1	145281631	.	A	.	.	PASS	END=145281632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:55
chr1	145281633	.	C	A	121.60	LowQD	BaseQRankSum=1.043;DP=93;Dels=0.00;FS=1.584;HRun=0;HaplotypeScore=8.5750;MQ=55;MQ0=0;MQRankSum=-0.158;QD=1.31;ReadPosRankSum=0.463;SB=-58.87	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:77,16:93:99:152,0,2123:55:99:0.172
chr1	145281634	.	C	.	.	PASS	END=145281640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:55
chr1	145281641	.	T	.	.	PASS	END=145281665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:54
chr1	145281666	.	A	.	.	PASS	END=145281706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:54
chr1	145281944	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:54
chr1	145281945	.	C	.	36.01	LowGQX	DP=3;MQ=54;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:54:6
chr1	145281946	.	C	.	.	LowGQX	END=145281955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:54
chr1	145281956	.	A	.	.	LowGQX	END=145281961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:54
chr1	145281962	.	G	.	.	LowGQX	END=145281965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:54
chr1	145281966	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:54
chr1	145281967	.	G	.	.	LowGQX	END=145281968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:54
chr1	145281969	.	G	.	.	LowGQX	.	GT	./.
chr1	145281970	.	G	.	.	LowGQX	END=145281971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145281972	.	A	.	.	LowGQX	.	GT	./.
chr1	145281973	.	C	.	.	LowGQX	END=145281979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145281980	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	145281981	.	T	.	.	LowGQX	END=145281996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145281997	.	A	.	.	LowGQX	.	GT	./.
chr1	145281998	.	A	.	.	LowGQX	END=145282014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145282015	.	A	.	.	LowGQX	.	GT	./.
chr1	145282016	.	A	.	.	LowGQX	END=145282019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145282020	.	G	.	.	LowGQX	.	GT	./.
chr1	145282021	.	A	.	.	LowGQX	END=145282026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145282027	.	A	.	.	LowGQX	.	GT	./.
chr1	145282028	.	T	.	.	LowGQX	END=145282031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145282032	.	A	.	.	LowGQX	.	GT	./.
chr1	145282033	.	C	.	.	LowGQX	END=145282037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145282038	.	G	.	.	LowGQX	.	GT	./.
chr1	145282039	.	A	.	.	LowGQX	END=145282043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145290408	.	A	.	.	LowGQX	END=145290507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145293105	.	C	.	.	LowGQX	END=145293124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145293125	.	G	.	.	LowGQX	END=145293135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	145293136	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:2:3.01:60:3
chr1	145293137	.	C	.	.	LowGQX	END=145293204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	145293405	.	C	.	.	LowGQX	END=145293411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:58
chr1	145293412	.	G	.	.	LowGQX	END=145293419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:58
chr1	145293420	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:58
chr1	145293421	.	G	.	.	LowGQX	END=145293422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:58
chr1	145293423	.	C	.	.	PASS	END=145293432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:59
chr1	145293433	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:42:59
chr1	145293434	.	G	.	.	PASS	END=145293437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:59
chr1	145293438	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:3:59
chr1	145293439	.	A	.	.	PASS	END=145293458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:59
chr1	145293459	.	A	.	.	PASS	END=145293493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:58
chr1	145293494	.	A	.	.	PASS	END=145293514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:58
chr1	145293515	.	A	G	141.18	PASS	BaseQRankSum=-1.352;DP=22;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=58;MQ0=0;MQRankSum=-0.363;QD=6.42;ReadPosRankSum=-1.286;SB=-82.93	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:10,12:22:99:171,0,205:58:99:0.545
chr1	145293516	.	C	.	.	PASS	END=145293534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:58
chr1	145293535	.	C	.	.	PASS	END=145293565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:56
chr1	145293566	.	G	A	65.75	PASS	BaseQRankSum=1.898;DP=15;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9469;MQ=56;MQ0=0;MQRankSum=-1.776;QD=4.38;ReadPosRankSum=-0.306;SB=-60.41	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:10,5:15:95.75:96,0,278:56:66:0.333
chr1	145293567	.	A	.	.	PASS	END=145293569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:56
chr1	145293570	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:56
chr1	145293571	.	A	.	.	PASS	END=145293578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:54
chr1	145293579	.	C	.	.	PASS	END=145293580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:54
chr1	145295371	.	A	.	.	LowGQX;LowMQ	END=145295421	GT	./.
chr1	145295422	.	G	.	.	LowGQX	END=145295432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:38
chr1	145295433	.	G	.	.	LowGQX	END=145295469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:38
chr1	145295470	.	C	.	.	LowGQX	END=145295520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:9:37
chr1	145295521	.	C	T	32.37	PASS	BaseQRankSum=0.922;DP=10;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=38;MQ0=2;MQRankSum=-1.638;QD=3.24;ReadPosRankSum=-0.922;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:6,4:10:62.36:62,0,72:38:32:0.400
chr1	145295522	.	T	.	.	LowGQX	END=145295525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:12:38
chr1	145296356	.	G	.	.	LowGQX	END=145296359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:34
chr1	145296360	.	A	.	.	LowGQX	END=145296371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:33
chr1	145296372	.	A	G	280.22	LowGQ;LowGQX	DP=12;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=34;MQ0=0;QD=23.35;SB=-110.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,12:12:27.05:313,27,0:34:27:1.000
chr1	145296373	.	G	.	.	LowGQX	END=145296398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:34
chr1	145296399	.	C	.	.	PASS	END=145296400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:40
chr1	145296401	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:40
chr1	145296402	.	G	.	.	PASS	END=145296404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:40
chr1	145296405	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:40
chr1	145296406	.	A	.	.	PASS	END=145296407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:40
chr1	145296408	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:40
chr1	145296409	.	G	.	.	PASS	END=145296426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:40
chr1	145296427	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:1:40
chr1	145296428	.	G	.	.	PASS	END=145296438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:40
chr1	145296439	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:40
chr1	145296440	.	G	.	.	PASS	END=145296447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:40
chr1	145296448	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:1:41
chr1	145296449	.	A	.	.	PASS	END=145296472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:38
chr1	145296473	.	C	.	.	PASS	END=145296477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:38
chr1	145296478	.	G	T	316.56	PASS	BaseQRankSum=0.505;DP=16;Dels=0.00;FS=11.139;HRun=0;HaplotypeScore=1.8938;MQ=38;MQ0=0;MQRankSum=-1.660;QD=19.79;ReadPosRankSum=-0.072;SB=-118.19	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,12:16:68.09:347,0,68:38:68:0.800
chr1	145296479	.	A	.	.	PASS	END=145296492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:35
chr1	145296493	.	T	.	.	PASS	END=145296496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:35
chr1	145296497	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:35
chr1	145296498	.	G	.	.	PASS	END=145296499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:35
chr1	145296500	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:35
chr1	145296501	.	G	.	.	PASS	END=145296503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:35
chr1	145296504	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:35
chr1	145296505	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:35
chr1	145296506	.	A	.	.	LowGQX	END=145296507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:35
chr1	145296508	.	C	.	.	PASS	END=145296511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:35
chr1	145296512	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:35
chr1	145296513	.	A	.	.	PASS	END=145296514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:35
chr1	145296515	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:35
chr1	145296516	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:35
chr1	145296517	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:35
chr1	145296518	.	A	.	.	PASS	END=145296520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:35
chr1	145296521	.	T	.	.	LowGQX	END=145296522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:35
chr1	145296523	.	G	.	.	PASS	END=145296524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:35
chr1	145296525	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:35
chr1	145296526	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:35
chr1	145296527	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:35
chr1	145296528	.	G	.	.	PASS	END=145296531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:35
chr1	145296532	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:35
chr1	145296533	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:35
chr1	145296534	.	T	.	.	LowGQX	END=145296537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:35
chr1	145296538	.	C	.	.	PASS	END=145296540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:35
chr1	145296541	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:35
chr1	145296542	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:35
chr1	145296543	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:35
chr1	145296544	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:35
chr1	145296545	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:35
chr1	145296546	.	G	.	.	PASS	END=145296549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:35
chr1	145296550	.	C	.	.	LowGQX	END=145296551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:33
chr1	145296552	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:33
chr1	145296553	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:33
chr1	145296554	.	T	.	.	PASS	END=145296557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:33
chr1	145296558	.	A	.	.	LowGQX	END=145296571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:32
chr1	145297605	.	T	.	.	PASS	END=145297629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:53
chr1	145297630	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:2:53
chr1	145297631	.	A	.	.	PASS	END=145297645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:53
chr1	145297646	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:53
chr1	145297647	.	T	.	.	PASS	END=145297649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:53
chr1	145297650	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:53
chr1	145297651	.	G	.	.	PASS	END=145297652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:53
chr1	145297653	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:53
chr1	145297654	.	G	.	.	PASS	END=145297657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:53
chr1	145297658	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:53
chr1	145297659	.	G	.	.	PASS	END=145297665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:53
chr1	145297666	.	A	.	.	LowGQX	END=145297677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:54
chr1	145297678	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:54
chr1	145297679	.	C	.	.	LowGQX	END=145297693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:53
chr1	145297694	.	A	.	.	LowGQX	END=145297704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:54
chr1	145298154	.	G	.	.	PASS	END=145298185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:91:24
chr1	145298186	.	C	G	208.57	PASS	BaseQRankSum=0.741;DP=62;Dels=0.00;FS=4.037;HRun=0;HaplotypeScore=4.3087;MQ=24;MQ0=11;MQRankSum=2.540;QD=3.36;ReadPosRankSum=0.487;SB=-12.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,17:62:99:239,0,705:24:99:0.279
chr1	145298187	.	C	.	.	PASS	END=145298245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:94:23
chr1	145298246	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:73:24
chr1	145298247	.	C	.	.	PASS	END=145298318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:96:24
chr1	145298319	.	G	.	.	PASS	END=145298366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:24
chr1	145299729	.	G	.	.	LowGQX	END=145299740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:6:28
chr1	145299741	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:3:28
chr1	145299742	.	C	.	.	LowGQX	END=145299750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:6:28
chr1	145299751	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:3:28
chr1	145299752	.	C	.	.	LowGQX	END=145299757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:6:28
chr1	145299758	.	C	.	39.02	LowGQX	DP=7;MQ=28;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:5:7:9.03:28:9
chr1	145299759	.	G	.	.	LowGQX	END=145299770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:6:28
chr1	145299771	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:3:28
chr1	145299772	.	T	.	.	LowGQX	END=145299780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:6:26
chr1	145299781	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:3:26
chr1	145299782	.	C	.	.	LowGQX	END=145299784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:9:26
chr1	145299785	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:3:31
chr1	145299786	.	T	.	.	LowGQX	END=145299792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:9:31
chr1	145299793	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:6:31
chr1	145299794	.	C	.	.	LowGQX	END=145299799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:9:31
chr1	145299800	.	G	.	.	LowGQX	END=145299814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:6:30
chr1	145299815	.	T	.	.	LowGQX	END=145299819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:12:38
chr1	145299820	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:9:41
chr1	145299821	.	A	.	.	LowGQX	END=145299823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:15:41
chr1	145299824	.	C	.	42.03	LowGQX	DP=11;MQ=41;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:6:11:12.04:41:12
chr1	145299825	.	A	.	.	LowGQX	END=145299837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:12:41
chr1	145299838	.	G	.	.	LowGQX	END=145299843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:15:43
chr1	145299844	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:12:43
chr1	145299845	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:43
chr1	145299846	.	C	.	.	LowGQX	END=145299847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:12:43
chr1	145299848	.	G	.	.	LowGQX	END=145299866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:15:41
chr1	145299867	.	T	.	.	LowGQX	END=145299875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:15:44
chr1	145299876	.	C	.	.	LowGQX	END=145299886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:12:48
chr1	145299887	.	A	.	.	LowGQX	END=145299890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:9:50
chr1	145299891	.	T	.	.	LowGQX	END=145299905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:12:50
chr1	145299906	.	T	.	45.04	LowGQX	DP=10;MQ=50;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:7:10:15.05:50:15
chr1	145299907	.	C	.	.	LowGQX	END=145299929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:50
chr1	145299930	.	A	.	.	LowGQX	END=145299939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:51
chr1	145301719	.	G	.	.	PASS	END=145301764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:48
chr1	145301765	.	A	.	.	PASS	END=145301790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:69:45
chr1	145301791	.	G	.	.	PASS	END=145301792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:66:45
chr1	145301793	.	A	G	418.09	PASS	BaseQRankSum=1.278;DP=39;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=6.6284;MQ=45;MQ0=0;MQRankSum=0.407;QD=10.72;ReadPosRankSum=0.941;SB=-227.57	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:20,19:39:99:448,0,380:45:99:0.487
chr1	145301794	.	G	.	.	PASS	END=145301801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:44
chr1	145301802	.	C	G	354.86	PASS	BaseQRankSum=0.172;DP=34;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=8.5223;MQ=45;MQ0=0;MQRankSum=0.310;QD=10.44;ReadPosRankSum=0.172;SB=-171.21	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:17,17:34:99:385,0,338:45:99:0.500
chr1	145301803	.	A	.	.	PASS	END=145301808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:41
chr1	145301809	.	G	.	.	PASS	END=145301822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:41
chr1	145302653	.	G	.	.	LowGQX	END=145302661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:24
chr1	145302662	.	A	.	.	LowGQX;LowMQ	END=145302703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:11
chr1	145302704	.	A	G	18.20	LowGQ;LowGQX;LowMQ;SB	DP=7;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=11;MQ0=5;QD=2.60;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,7:7:5.99:49,6,0:11:6:1.000
chr1	145302705	.	G	.	.	LowGQX;LowMQ	END=145302730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:6:12
chr1	145302731	.	C	.	.	LowGQX;LowMQ	END=145302751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:9:18
chr1	145302752	.	A	.	.	LowGQX	END=145302753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:9:21
chr1	145302754	.	C	.	.	LowGQX	END=145302760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:12:21
chr1	145302761	.	C	.	.	LowGQX	END=145302769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:15:25
chr1	145302770	.	C	.	.	LowGQX	END=145302771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:18:25
chr1	145302772	.	C	.	.	LowGQX	END=145302773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:27
chr1	145302774	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:18:26
chr1	145302775	.	T	G	12.05	LowGQX;LowQD;SB	BaseQRankSum=-0.354;DP=16;Dels=0.00;FS=3.522;HRun=1;HaplotypeScore=0.0000;MQ=26;MQ0=5;MQRankSum=0.354;QD=0.75;ReadPosRankSum=1.532;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:14,2:16:41.77:42,0,158:26:12:0.125
chr1	145302776	.	A	.	.	LowGQX	END=145302809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:21:25
chr1	145302810	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:0:27
chr1	145302811	.	G	.	.	LowGQX	END=145302837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:25
chr1	145302838	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:3:26
chr1	145302839	.	C	.	.	LowGQX	END=145302868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:21:24
chr1	145303896	.	T	.	.	PASS	END=145303905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:54:52
chr1	145303906	.	G	A	54.63	LowQD	BaseQRankSum=-0.300;DP=30;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=53;MQ0=2;MQRankSum=-3.419;QD=1.82;ReadPosRankSum=-1.260;SB=-21.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:23,7:30:84.63:85,0,551:53:55:0.233
chr1	145303907	.	C	.	.	PASS	END=145303959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:52
chr1	145303960	.	G	.	.	PASS	END=145303970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:52
chr1	145303971	.	A	G	27.54	LowGQX;LowQD	BaseQRankSum=-1.176;DP=24;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=52;MQ0=1;MQRankSum=-3.123;QD=1.15;ReadPosRankSum=0.933;SB=-15.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:19,5:24:57.53:58,0,472:52:28:0.208
chr1	145303972	.	T	.	.	PASS	END=145303989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:51
chr1	145303990	.	T	.	.	PASS	END=145303995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:51
chr1	145304446	.	G	.	.	PASS	END=145304484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:39:37
chr1	145304485	.	A	.	.	PASS	END=145304535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:42:38
chr1	145304536	.	A	.	.	PASS	END=145304554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:39:43
chr1	145304555	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:6:43
chr1	145304556	.	A	.	.	PASS	END=145304559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:36:43
chr1	145304560	.	C	.	.	PASS	END=145304564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:43
chr1	145304565	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:36:43
chr1	145304566	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:43
chr1	145304567	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:36:43
chr1	145304568	.	A	.	.	PASS	END=145304584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:43
chr1	145304585	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:16:43
chr1	145304586	.	G	.	.	PASS	END=145304608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:43
chr1	145304609	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:1:45
chr1	145304610	.	T	.	.	PASS	END=145304640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:44
chr1	145304641	.	A	.	.	PASS	END=145304642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:42
chr1	145304643	.	A	.	.	LowGQX	END=145304652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:39
chr1	145305861	.	C	.	.	LowMQ	END=145305893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:96:12
chr1	145305894	.	T	.	.	LowMQ	END=145305972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:78:9
chr1	145305973	.	A	.	.	LowMQ	END=145305989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:72:9
chr1	145305990	.	C	.	.	LowMQ	END=145305996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:63:8
chr1	145305997	.	G	.	.	LowMQ	END=145306001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:42:7
chr1	145306002	.	G	.	.	LowMQ	END=145306003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:39:7
chr1	145306004	.	T	.	.	LowMQ	END=145306005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:30:6
chr1	145306006	.	T	.	.	LowGQX;LowMQ	END=145306008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:27:6
chr1	145306009	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:107:30:6
chr1	145306010	.	A	.	.	LowGQX;LowMQ	END=145306020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:24:6
chr1	145309899	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:26:21:14
chr1	145309900	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:27:15:14
chr1	145309901	.	A	.	.	LowGQX;LowMQ	END=145309902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:21:14
chr1	145309903	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:26:9:14
chr1	145309904	.	C	.	.	LowGQX;LowMQ	END=145309913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:15:13
chr1	145309914	.	C	.	.	LowGQX;LowMQ	END=145309925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:18:13
chr1	145309926	.	A	.	.	LowGQX;LowMQ	END=145309928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:21:13
chr1	145309929	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:37:18:13
chr1	145309930	.	C	.	.	LowGQX;LowMQ	END=145309984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:24:13
chr1	145309985	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:35:18:14
chr1	145309986	.	T	.	.	LowGQX;LowMQ	END=145310007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:21:14
chr1	145310008	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:31:18:13
chr1	145310009	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:27:1:12
chr1	145310010	.	G	.	.	LowGQX;LowMQ	END=145310030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:15:12
chr1	145310031	.	A	.	.	LowGQX;LowMQ	END=145310047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:9:10
chr1	145310048	.	G	.	.	LowGQX;LowMQ	END=145310061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:9:9
chr1	145310062	.	C	.	.	LowGQX;LowMQ	END=145310063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:6:10
chr1	145311079	.	G	.	.	LowGQX	END=145311082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:45
chr1	145311083	.	A	C	106.20	PASS	BaseQRankSum=0.825;DP=11;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9469;MQ=45;MQ0=0;MQRankSum=-2.637;QD=9.65;ReadPosRankSum=0.143;SB=-63.59	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:5,6:11:95.96:136,0,96:45:96:0.545
chr1	145311084	.	C	.	.	LowGQX	END=145311092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:42
chr1	145311093	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:42
chr1	145311094	.	T	.	.	LowGQX	END=145311100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:42
chr1	145311101	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:42
chr1	145311102	.	G	.	.	LowGQX	END=145311118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:42
chr1	145311119	.	A	.	.	LowGQX	END=145311120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:43
chr1	145311121	.	T	.	.	LowGQX	END=145311123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:43
chr1	145311124	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:15:43
chr1	145311125	.	A	.	.	LowGQX	END=145311130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:43
chr1	145311131	.	G	.	.	LowGQX	END=145311132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:43
chr1	145311133	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:12:43
chr1	145311134	.	C	.	.	LowGQX	END=145311138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:43
chr1	145311139	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:43
chr1	145311140	.	G	.	.	LowGQX	END=145311143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:43
chr1	145311144	.	A	.	.	LowGQX	END=145311146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:15:43
chr1	145311147	.	G	.	.	LowGQX	END=145311150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:43
chr1	145311151	.	C	.	.	LowGQX	END=145311162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:41
chr1	145311163	.	G	.	.	LowGQX	END=145311167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:41
chr1	145311168	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:9:41
chr1	145311169	.	T	.	.	LowGQX	END=145311174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:37
chr1	145311175	.	A	.	.	LowGQX	END=145311178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:37
chr1	145311791	.	G	.	.	LowGQX	END=145311827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	145311828	.	C	G	130.22	LowGQ;LowGQX	DP=5;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=26.04;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,5:5:12.04:163,12,0:60:12:1.000
chr1	145311829	.	C	.	.	LowGQX	END=145311891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	145311892	.	C	.	.	LowGQX	END=145311896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145311897	.	C	.	.	LowGQX	END=145311958	GT	./.
chr1	145312654	.	T	.	.	LowGQX	END=145312700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:24:25
chr1	145312701	.	G	.	.	LowGQX	END=145312715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:21:21
chr1	145312716	.	C	.	.	LowGQX	END=145312723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:18:21
chr1	145312724	.	C	.	.	LowGQX	END=145312742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:21:20
chr1	145312743	.	A	.	.	LowGQX;LowMQ	END=145312753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:21:19
chr1	145313333	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145313334	.	G	.	.	LowGQX;LowMQ	END=145313343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:10
chr1	145313344	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145313345	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:5:3:10
chr1	145313346	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145313347	.	C	.	.	LowGQX;LowMQ	END=145313353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:10
chr1	145313354	.	A	.	8.05	LowGQX;LowMQ	DP=5;MQ=10;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.02:10:0
chr1	145313355	.	T	.	.	LowGQX;LowMQ	END=145313370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:9
chr1	145313371	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145313372	.	T	.	.	LowGQX;LowMQ	END=145313387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:0:9
chr1	145313388	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145313389	.	G	.	.	LowGQX;LowMQ	END=145313401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:9
chr1	145313402	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145313403	.	G	.	.	LowGQX;LowMQ	END=145313404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:9
chr1	145313405	.	C	.	32.96	LowGQX;LowMQ	DP=6;MQ=9;MQ0=4	GT:AD:DP:GQ:MQ:GQX	0/0:4:6:2.99:9:3
chr1	145313406	.	T	.	.	LowGQX;LowMQ	END=145313436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:9
chr1	145313437	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145313438	.	G	.	.	LowGQX;LowMQ	END=145313440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:9
chr1	145313441	.	A	.	.	LowGQX;LowMQ	END=145313506	GT	./.
chr1	145314134	.	C	.	.	LowGQX;LowMQ	END=145314293	GT	./.
chr1	145314903	.	G	.	.	LowGQX;LowMQ	END=145315101	GT	./.
chr1	145315739	.	G	.	.	LowGQX;LowMQ	END=145315899	GT	./.
chr1	145316511	.	G	.	.	LowGQX;LowMQ	END=145316709	GT	./.
chr1	145317322	.	C	.	32.99	LowGQX;LowMQ	DP=13;MQ=7;MQ0=12	GT:AD:DP:GQ:MQ:GQX	0/0:8:13:3:7:3
chr1	145317323	.	T	.	.	LowGQX;LowMQ	END=145317349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:3:6
chr1	145317350	.	A	.	.	LowGQX;LowMQ	END=145317412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:6:8
chr1	145317413	.	A	.	.	LowGQX;LowMQ	END=145317448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:3:8
chr1	145317449	.	A	.	.	LowGQX;LowMQ	END=145317464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:6:9
chr1	145317465	.	T	.	.	LowGQX;LowMQ	END=145317481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:3:11
chr1	145317982	.	A	.	.	LowGQX;LowMQ	END=145318226	GT	./.
chr1	145318852	.	C	.	.	LowGQX;LowMQ	END=145319011	GT	./.
chr1	145319623	.	G	.	.	LowGQX;LowMQ	END=145319663	GT	./.
chr1	145319664	.	T	.	.	LowGQX;LowMQ	END=145319672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:3:9
chr1	145319673	.	T	.	.	LowGQX;LowMQ	END=145319674	GT	./.
chr1	145319675	.	A	.	.	LowGQX;LowMQ	END=145319678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:3:9
chr1	145319679	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145319680	.	A	.	.	LowGQX;LowMQ	END=145319686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:3:9
chr1	145319687	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145319688	.	T	.	.	LowGQX;LowMQ	END=145319694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:3:9
chr1	145319695	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145319696	.	T	.	.	LowGQX;LowMQ	END=145319702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:3:9
chr1	145319703	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145319704	.	G	.	.	LowGQX;LowMQ	END=145319714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:3:9
chr1	145319715	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145319716	.	A	.	.	LowGQX;LowMQ	END=145319749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:3:8
chr1	145319750	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145319751	.	T	.	.	LowGQX;LowMQ	END=145319782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:3:8
chr1	145319783	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145319784	.	C	.	.	LowGQX;LowMQ	END=145319814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:3:9
chr1	145319815	.	A	.	.	LowGQX;LowMQ	END=145319821	GT	./.
chr1	145320459	.	G	.	.	LowGQX;LowMQ	END=145320619	GT	./.
chr1	145321229	.	G	.	.	LowGQX;LowMQ	END=145321427	GT	./.
chr1	145322040	.	C	.	.	LowGQX	END=145322058	GT	./.
chr1	145322059	.	T	.	.	LowGQX	END=145322060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr1	145322061	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:2:3:17
chr1	145322062	.	A	.	.	LowGQX;LowMQ	END=145322063	GT	./.
chr1	145322064	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:2:3:17
chr1	145322065	.	G	.	.	LowGQX;LowMQ	END=145322069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:12
chr1	145322070	.	G	.	.	LowGQX;LowMQ	END=145322072	GT	./.
chr1	145322073	.	T	.	.	LowGQX;LowMQ	END=145322074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:11
chr1	145322075	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145322076	.	T	.	.	LowGQX;LowMQ	END=145322077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:11
chr1	145322078	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145322079	.	G	.	.	LowGQX;LowMQ	END=145322081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:11
chr1	145322082	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145322083	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:5:3:11
chr1	145322084	.	A	.	.	LowGQX;LowMQ	END=145322086	GT	./.
chr1	145322087	.	A	.	.	LowGQX;LowMQ	END=145322095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:9
chr1	145322096	.	T	.	.	LowGQX;LowMQ	END=145322103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:3:7
chr1	145322104	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145322105	.	A	.	.	LowGQX;LowMQ	END=145322114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:0:6
chr1	145322115	.	T	.	.	LowGQX;LowMQ	END=145322117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:6
chr1	145322118	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145322119	.	T	.	.	LowGQX;LowMQ	END=145322137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:6
chr1	145322138	.	C	.	32.99	LowGQX;LowMQ	DP=15;MQ=6;MQ0=14	GT:AD:DP:GQ:MQ:GQX	0/0:10:15:3:6:3
chr1	145322139	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145322140	.	A	.	.	LowGQX;LowMQ	END=145322144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:6
chr1	145322145	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145322146	.	G	.	.	LowGQX;LowMQ	END=145322167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:6
chr1	145322168	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145322169	.	G	.	.	LowGQX;LowMQ	END=145322189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:3:7
chr1	145322190	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145322191	.	T	.	.	LowGQX;LowMQ	END=145322199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:3:7
chr1	145322700	.	A	.	.	LowGQX;LowMQ	END=145322927	GT	./.
chr1	145322928	.	G	.	.	LowGQX	END=145322944	GT	./.
chr1	145323630	.	T	.	.	LowGQX	END=145323677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:42
chr1	145323678	.	A	.	.	LowGQX	END=145323697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:44
chr1	145323698	.	T	.	.	LowGQX	END=145323729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:33
chr1	145324347	.	G	.	.	LowGQX;LowMQ	END=145324545	GT	./.
chr1	145325183	.	G	.	.	LowGQX;LowMQ	END=145325184	GT	./.
chr1	145325185	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:61:3:3
chr1	145325186	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145325187	.	G	.	.	LowGQX;LowMQ	END=145325200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:3:3
chr1	145325201	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145325202	.	T	.	.	LowGQX;LowMQ	END=145325263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:3:3
chr1	145325264	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145325265	.	G	.	.	LowGQX;LowMQ	END=145325271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:3:3
chr1	145325272	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145325273	.	A	.	.	LowGQX;LowMQ	END=145325279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:3:3
chr1	145325280	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145325281	.	A	.	.	LowGQX;LowMQ	END=145325289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:3:3
chr1	145325290	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145325291	.	A	.	.	LowGQX;LowMQ	END=145325292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:3:3
chr1	145325293	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145325294	.	A	.	.	LowGQX;LowMQ	END=145325301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:3:3
chr1	145325302	.	A	.	.	LowGQX;LowMQ	END=145325303	GT	./.
chr1	145325304	.	G	.	.	LowGQX;LowMQ	END=145325306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:3:3
chr1	145325307	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145325308	.	A	.	.	LowGQX;LowMQ	END=145325309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:3:3
chr1	145325310	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145325311	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:84:3:3
chr1	145325312	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145325313	.	G	.	.	LowGQX;LowMQ	END=145325323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:3:3
chr1	145325324	.	C	.	.	LowGQX;LowMQ	END=145325325	GT	./.
chr1	145325326	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:81:3:3
chr1	145325327	.	A	.	.	LowGQX;LowMQ	END=145325328	GT	./.
chr1	145325329	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:77:3:3
chr1	145325330	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145325331	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:76:3:3
chr1	145325332	.	A	.	.	LowGQX;LowMQ	END=145325333	GT	./.
chr1	145325334	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:72:3:3
chr1	145325335	.	A	.	.	LowGQX;LowMQ	END=145325343	GT	./.
chr1	145325951	.	G	.	.	LowGQX	END=145325962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:28
chr1	145325963	.	A	.	33	LowGQX	DP=3;MQ=28;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:28:3
chr1	145325964	.	G	.	.	LowGQX	END=145325996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:28
chr1	145325997	.	A	.	36.01	LowGQX	DP=3;MQ=28;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:28:6
chr1	145325998	.	G	.	.	LowGQX	END=145326001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:28
chr1	145326002	.	C	.	.	LowGQX	END=145326059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:39
chr1	145326060	.	G	A	9.28	LowGQ;LowGQX	BaseQRankSum=0.736;DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=39;MQ0=1;MQRankSum=0.736;QD=2.32;ReadPosRankSum=0.736;SB=-25.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:26.48:39,0,26:39:9:0.500
chr1	145326061	.	C	.	.	LowGQX	END=145326149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:39
chr1	145326762	.	C	A	19.34	LowGQ;LowGQX;LowMQ;LowQD;SB	BaseQRankSum=-0.736;DP=16;Dels=0.00;FS=4.771;HRun=0;HaplotypeScore=0.0000;MQ=11;MQ0=13;MQRankSum=0.736;QD=1.21;ReadPosRankSum=0.736;SB=-1.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:12,4:16:19.63:49,0,20:11:19:0.250
chr1	145326763	.	T	.	.	LowGQX;LowMQ	END=145326778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:6:10
chr1	145326779	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:17:3:10
chr1	145326780	.	G	.	.	LowGQX;LowMQ	END=145326804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:6:9
chr1	145326805	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:21:3:9
chr1	145326806	.	A	.	.	LowGQX;LowMQ	END=145326833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:6:9
chr1	145326834	.	A	.	.	LowGQX;LowMQ	END=145326835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:3:10
chr1	145326836	.	C	.	.	LowGQX;LowMQ	END=145326837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:6:8
chr1	145326838	.	T	.	.	LowGQX;LowMQ	END=145326880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:6
chr1	145326881	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145326882	.	A	.	.	LowGQX;LowMQ	END=145326901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:3:6
chr1	145326902	.	C	.	.	LowGQX;LowMQ	END=145326904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:3:7
chr1	145326905	.	T	.	.	LowGQX;LowMQ	END=145326921	GT	./.
chr1	145327481	.	C	.	.	LowGQX	END=145327550	GT	./.
chr1	145327551	.	A	.	.	LowGQX;LowMQ	END=145327665	GT	./.
chr1	145328294	.	T	.	.	LowGQX	END=145328327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145328328	.	T	.	.	LowGQX	END=145328453	GT	./.
chr1	145329078	.	G	.	.	LowGQX;LowMQ	END=145329170	GT	./.
chr1	145329171	.	A	.	.	LowGQX	END=145329270	GT	./.
chr1	145329271	.	G	.	.	LowGQX;LowMQ	END=145329276	GT	./.
chr1	145329965	.	G	.	.	LowMQ	END=145329979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:30:8
chr1	145329980	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:81:27:9
chr1	145329981	.	G	.	.	LowMQ	END=145329985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:33:9
chr1	145329986	.	G	.	.	LowGQX;LowMQ	END=145329987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:24:9
chr1	145329988	.	G	.	.	LowMQ	END=145329995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:30:9
chr1	145329996	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:77:27:9
chr1	145329997	.	A	.	.	LowMQ	END=145329998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:30:10
chr1	145329999	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:79:27:10
chr1	145330000	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:79:30:10
chr1	145330001	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:80:27:10
chr1	145330002	.	G	.	.	LowMQ	END=145330007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:30:10
chr1	145330008	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:77:27:10
chr1	145330009	.	A	.	.	LowMQ	END=145330016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:30:10
chr1	145330017	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:76:27:10
chr1	145330018	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:76:30:10
chr1	145330019	.	G	.	.	LowGQX;LowMQ	END=145330020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:24:10
chr1	145330021	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:78:30:10
chr1	145330022	.	A	.	.	LowGQX;LowMQ	END=145330024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:24:10
chr1	145330025	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:78:30:10
chr1	145330026	.	G	.	.	LowGQX;LowMQ	END=145330027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:21:10
chr1	145330028	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:78:30:10
chr1	145330029	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:79:27:11
chr1	145330030	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:79:33:11
chr1	145330031	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:79:27:11
chr1	145330032	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:78:33:11
chr1	145330033	.	A	.	.	LowGQX;LowMQ	END=145330034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:21:11
chr1	145330035	.	G	.	.	LowMQ	END=145330036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:33:11
chr1	145330037	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:79:27:12
chr1	145330038	.	A	.	.	LowMQ	END=145330042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:30:12
chr1	145330043	.	G	.	.	LowGQX;LowMQ	END=145330046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:24:12
chr1	145330047	.	A	.	.	LowMQ	END=145330049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:30:13
chr1	145330050	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:74:24:12
chr1	145330051	.	A	.	.	LowMQ	END=145330052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:30:12
chr1	145330053	.	A	.	.	LowGQX;LowMQ	END=145330056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:24:13
chr1	145330057	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:70:30:13
chr1	145330058	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:70:27:13
chr1	145330059	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:69:15:13
chr1	145330060	.	C	.	.	LowGQX;LowMQ	END=145330061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:27:13
chr1	145330062	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:65:30:13
chr1	145330063	.	A	.	.	LowGQX;LowMQ	END=145330064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:24:13
chr1	145330065	.	C	.	.	LowMQ	END=145330067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:30:14
chr1	145330068	.	G	.	.	LowGQX;LowMQ	END=145330073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:24:14
chr1	145330074	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:57:30:14
chr1	145330682	.	G	.	.	LowGQX	END=145330688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:26
chr1	145330689	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:18:26
chr1	145330690	.	A	.	.	LowGQX	END=145330692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:21:25
chr1	145330693	.	G	.	.	LowGQX	END=145330694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:18:22
chr1	145330695	.	G	.	.	LowGQX	END=145330696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:15:23
chr1	145330697	.	T	.	.	LowGQX	END=145330700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:21:23
chr1	145330701	.	G	.	.	LowGQX	END=145330710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:15:21
chr1	145330711	.	G	.	.	LowGQX	END=145330734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:12:21
chr1	145330735	.	C	.	.	LowGQX	END=145330737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:9:21
chr1	145330738	.	G	.	.	LowGQX	END=145330740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:15:21
chr1	145330741	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:9:21
chr1	145330742	.	G	.	.	LowGQX	END=145330752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:12:21
chr1	145330753	.	A	.	.	LowGQX	END=145330758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:15:21
chr1	145330759	.	T	.	.	LowGQX	END=145330768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:12:20
chr1	145330769	.	T	.	.	LowGQX	END=145330774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:9:20
chr1	145330775	.	T	.	.	LowGQX;LowMQ	END=145330789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:3:16
chr1	145330790	.	A	.	.	LowGQX;LowMQ	END=145330811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:3:9
chr1	145330812	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145330813	.	G	.	.	LowGQX;LowMQ	END=145330814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:9
chr1	145330815	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145330816	.	T	.	.	LowGQX;LowMQ	END=145330822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:11
chr1	145330823	.	A	.	33	LowGQX;LowMQ	DP=5;MQ=11;MQ0=4	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:11:3
chr1	145330824	.	A	.	.	LowGQX;LowMQ	END=145330828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:11
chr1	145330829	.	A	.	3.20	LowGQX;LowMQ	DP=5;MQ=11;MQ0=4	GT:AD:DP:GQ:MQ:GQX	0/0:1:5:0:11:0
chr1	145330830	.	T	.	.	LowGQX;LowMQ	END=145330835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:11
chr1	145330836	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145330837	.	T	.	.	LowGQX;LowMQ	END=145330841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:11
chr1	145330842	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145330843	.	G	.	.	LowGQX;LowMQ	END=145330849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:13
chr1	145330850	.	T	.	.	LowGQX;LowMQ	END=145330855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:18
chr1	145330856	.	G	.	33	LowGQX;LowMQ	DP=3;MQ=14;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:14:3
chr1	145330857	.	T	.	.	LowGQX;LowMQ	END=145330859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:14
chr1	145330860	.	G	.	33	LowGQX;LowMQ	DP=3;MQ=14;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:14:3
chr1	145330861	.	T	.	.	LowGQX;LowMQ	END=145330880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:14
chr1	145331491	.	C	.	.	LowGQX;LowMQ	END=145331650	GT	./.
chr1	145332151	.	A	.	.	LowGQX;LowMQ	END=145332395	GT	./.
chr1	145333021	.	C	.	.	LowGQX	END=145333030	GT	./.
chr1	145333031	.	G	.	.	LowGQX;LowMQ	END=145333180	GT	./.
chr1	145333796	.	G	.	.	LowGQX;LowMQ	END=145333902	GT	./.
chr1	145333903	.	C	.	.	LowGQX	END=145333951	GT	./.
chr1	145333952	.	T	.	.	LowGQX;LowMQ	END=145333994	GT	./.
chr1	145334632	.	G	.	.	LowGQX;LowMQ	END=145334792	GT	./.
chr1	145335388	.	G	.	.	LowGQX;LowMQ	END=145335586	GT	./.
chr1	145336197	.	C	.	.	LowGQX;LowMQ	END=145336356	GT	./.
chr1	145336857	.	A	.	.	LowGQX;LowMQ	END=145337101	GT	./.
chr1	145337727	.	C	.	.	LowGQX;LowMQ	END=145337813	GT	./.
chr1	145337814	.	T	.	.	LowGQX	END=145337886	GT	./.
chr1	145338516	.	G	.	.	LowGQX;LowMQ	END=145338648	GT	./.
chr1	145338649	.	A	.	.	LowGQX	END=145338714	GT	./.
chr1	145339352	.	G	.	.	LowGQX;LowMQ	END=145339512	GT	./.
chr1	145340108	.	G	.	.	LowGQX;LowMQ	END=145340306	GT	./.
chr1	145340917	.	C	.	.	LowGQX;LowMQ	END=145341076	GT	./.
chr1	145341577	.	A	.	.	LowGQX;LowMQ	END=145341821	GT	./.
chr1	145342447	.	C	.	.	LowGQX;LowMQ	END=145342606	GT	./.
chr1	145343240	.	G	.	.	LowGQX;LowMQ	END=145343262	GT	./.
chr1	145343263	.	G	.	.	LowGQX	END=145343385	GT	./.
chr1	145343386	.	C	.	.	LowGQX;LowMQ	END=145343438	GT	./.
chr1	145344076	.	G	.	.	LowGQX;LowMQ	END=145344236	GT	./.
chr1	145344832	.	G	.	.	LowGQX;LowMQ	END=145345030	GT	./.
chr1	145345641	.	C	.	.	LowGQX;LowMQ	END=145345800	GT	./.
chr1	145346301	.	A	.	.	LowGQX	END=145346375	GT	./.
chr1	145346376	.	C	.	.	LowGQX;LowMQ	END=145346490	GT	./.
chr1	145346491	.	A	.	.	LowGQX	END=145346535	GT	./.
chr1	145346536	.	G	.	.	LowGQX;LowMQ	END=145346545	GT	./.
chr1	145347171	.	C	.	.	LowGQX;LowMQ	END=145347313	GT	./.
chr1	145347314	.	A	.	.	LowGQX	END=145347325	GT	./.
chr1	145347326	.	C	.	.	LowGQX;LowMQ	END=145347330	GT	./.
chr1	145347964	.	G	.	.	LowGQX;LowMQ	END=145348057	GT	./.
chr1	145348058	.	G	.	.	LowGQX	END=145348119	GT	./.
chr1	145348120	.	T	.	.	LowGQX;LowMQ	END=145348162	GT	./.
chr1	145348800	.	G	.	.	LowGQX;LowMQ	END=145348960	GT	./.
chr1	145349562	.	G	.	.	LowGQX;LowMQ	END=145349567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:3:8
chr1	145349568	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145349569	.	C	.	.	LowGQX;LowMQ	END=145349602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:3:8
chr1	145349603	.	T	.	.	LowGQX;LowMQ	END=145349645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:6:8
chr1	145349646	.	G	.	.	LowGQX;LowMQ	END=145349674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:3:5
chr1	145349675	.	T	.	.	LowGQX;LowMQ	END=145349707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:3:6
chr1	145349708	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:10:3:7
chr1	145349709	.	A	.	4.98	LowGQX;LowMQ	DP=11;MQ=7;MQ0=10	GT:AD:DP:GQ:MQ:GQX	0/0:4:11:0.01:7:0
chr1	145349710	.	T	.	.	LowGQX;LowMQ	END=145349722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:3:6
chr1	145349723	.	G	.	.	LowGQX;LowMQ	END=145349760	GT	./.
chr1	145350371	.	C	.	.	LowGQX;LowMQ	END=145350380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:9:7
chr1	145350381	.	G	.	.	LowGQX;LowMQ	END=145350404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:9:6
chr1	145350405	.	G	.	.	LowGQX;LowMQ	END=145350415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:9:6
chr1	145350416	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:38:0:6
chr1	145350417	.	C	.	.	LowGQX;LowMQ	END=145350468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:9:5
chr1	145350469	.	C	A	56.19	LowGQ;LowGQX;LowMQ;LowQD;SB	DP=52;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=5;MQ0=47;QD=1.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:30,21:52:11.94:89,12,0:5:12:0.412
chr1	145350470	.	A	.	.	LowGQX;LowMQ	END=145350477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:9:5
chr1	145350478	.	G	.	.	LowGQX;LowMQ	END=145350497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:6:4
chr1	145350498	.	A	.	.	LowGQX;LowMQ	END=145350530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:3:4
chr1	145351031	.	A	.	.	LowGQX;LowMQ	END=145351054	GT	./.
chr1	145351055	.	G	.	.	LowGQX	END=145351074	GT	./.
chr1	145351075	.	T	.	.	LowGQX;LowMQ	END=145351250	GT	./.
chr1	145351251	.	C	.	.	LowGQX	END=145351275	GT	./.
chr1	145351901	.	C	.	.	LowGQX;LowMQ	END=145352058	GT	./.
chr1	145352059	.	C	.	.	LowGQX;LowMQ	END=145352060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:3:8
chr1	145352684	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145352685	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:15:3:5
chr1	145352686	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145352687	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:15:3:5
chr1	145352688	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145352689	.	A	.	.	LowGQX;LowMQ	END=145352710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:5
chr1	145352711	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145352712	.	A	.	.	LowGQX;LowMQ	END=145352724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:5
chr1	145352725	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145352726	.	T	.	.	LowGQX;LowMQ	END=145352738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:3:5
chr1	145352739	.	G	.	.	LowGQX;LowMQ	END=145352747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:3:4
chr1	145352748	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145352749	.	T	.	.	LowGQX;LowMQ	END=145352750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:3:4
chr1	145352751	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145352752	.	T	.	.	LowGQX;LowMQ	END=145352756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:3:4
chr1	145352757	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145352758	.	C	.	.	LowGQX;LowMQ	END=145352759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:3:4
chr1	145352760	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145352761	.	T	.	.	LowGQX;LowMQ	END=145352773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:3:4
chr1	145352774	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145352775	.	A	.	.	LowGQX;LowMQ	END=145352777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:3:4
chr1	145352778	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145352779	.	C	.	.	LowGQX;LowMQ	END=145352786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:3:4
chr1	145352787	.	C	.	.	LowGQX;LowMQ	END=145352882	GT	./.
chr1	145353520	.	G	.	.	LowGQX;LowMQ	END=145353680	GT	./.
chr1	145354294	.	G	.	.	LowGQX;LowMQ	END=145354296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:6:16
chr1	145354297	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:11:3:16
chr1	145354298	.	C	.	.	LowGQX;LowMQ	END=145354309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:6:15
chr1	145354310	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:12:3:15
chr1	145354311	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:12:9:15
chr1	145354312	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:12:3:15
chr1	145354313	.	G	.	.	LowGQX;LowMQ	END=145354316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:9:15
chr1	145354317	.	G	.	.	LowGQX;LowMQ	END=145354319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:6:18
chr1	145354320	.	A	.	.	LowGQX;LowMQ	END=145354325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:12:19
chr1	145354326	.	C	.	.	LowGQX	END=145354336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:15:21
chr1	145354337	.	G	.	.	LowGQX	END=145354338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:12:21
chr1	145354339	.	A	.	.	LowGQX	END=145354343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:15:21
chr1	145354344	.	T	.	.	LowGQX	END=145354345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:9:21
chr1	145354346	.	A	.	.	LowGQX	END=145354347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:18:21
chr1	145354348	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:12:21
chr1	145354349	.	G	.	.	LowGQX	END=145354351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:18:21
chr1	145354352	.	T	.	.	LowGQX	END=145354359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:12:21
chr1	145354360	.	A	.	.	LowGQX	END=145354372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:15:21
chr1	145354373	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:12:21
chr1	145354374	.	G	.	.	LowGQX	END=145354378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:18:21
chr1	145354379	.	T	.	.	LowGQX	END=145354380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:12:21
chr1	145354381	.	T	.	.	LowGQX	END=145354386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:18:21
chr1	145354387	.	T	.	.	LowGQX	END=145354391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:6:21
chr1	145354392	.	G	.	.	LowGQX	END=145354414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:9:22
chr1	145354415	.	T	.	.	LowGQX	END=145354416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:6:24
chr1	145354417	.	C	.	.	LowGQX	END=145354440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:9:24
chr1	145354441	.	A	G	124.77	LowGQ;LowGQX;SB	DP=10;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=25;MQ0=6;QD=12.48;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:3,7:10:12.04:157,12,0:25:12:0.700
chr1	145354442	.	T	.	.	LowGQX	END=145354468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:25
chr1	145354469	.	T	.	.	LowGQX	.	GT	./.
chr1	145354470	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:28
chr1	145354471	.	A	.	.	LowGQX	.	GT	./.
chr1	145354472	.	G	.	.	LowGQX	END=145354478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:23
chr1	145354479	.	T	.	.	LowGQX	END=145354480	GT	./.
chr1	145354481	.	T	.	.	LowGQX	END=145354492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:23
chr1	145355103	.	C	.	.	LowGQX;LowMQ	END=145355262	GT	./.
chr1	145355765	.	A	.	.	LowGQX;LowMQ	END=145356009	GT	./.
chr1	145356635	.	C	.	.	LowGQX;LowMQ	END=145356749	GT	./.
chr1	145356750	.	C	.	.	LowGQX	END=145356794	GT	./.
chr1	145357416	.	G	.	.	LowGQX;LowMQ	END=145357614	GT	./.
chr1	145358252	.	G	.	.	LowGQX;LowMQ	END=145358412	GT	./.
chr1	145359014	.	G	.	.	LowGQX	END=145359048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	145359049	.	A	.	2.30	LowGQX	DP=1;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:27:0
chr1	145359050	.	A	.	.	LowGQX	END=145359051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	145359052	.	G	.	.	LowGQX	END=145359077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:33
chr1	145359078	.	T	.	.	LowGQX	END=145359110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:32
chr1	145359111	.	T	.	.	LowGQX	END=145359187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:9:32
chr1	145359823	.	C	.	.	LowGQX;LowMQ	END=145359878	GT	./.
chr1	145359879	.	T	.	.	LowGQX;LowMQ	END=145359895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:3:6
chr1	145359896	.	A	.	.	LowGQX;LowMQ	END=145359920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:3:7
chr1	145359921	.	C	.	32.97	LowGQX;LowMQ	DP=12;MQ=8;MQ0=9	GT:AD:DP:GQ:MQ:GQX	0/0:9:12:2.99:8:3
chr1	145359922	.	A	.	.	LowGQX;LowMQ	END=145359965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:3:7
chr1	145359966	.	T	.	.	LowGQX;LowMQ	END=145359982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:9
chr1	145360483	.	A	.	.	LowGQX	END=145360498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:20
chr1	145360499	.	G	.	.	LowGQX	END=145360520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:20
chr1	145360521	.	C	.	36	LowGQX;LowMQ	DP=5;MQ=15;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.01:15:6
chr1	145360522	.	T	.	.	LowGQX;LowMQ	END=145360525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:15
chr1	145360526	.	T	.	36	LowGQX;LowMQ	DP=5;MQ=15;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:3:5:6.01:15:6
chr1	145360527	.	T	.	.	LowGQX;LowMQ	END=145360566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:15
chr1	145360567	.	G	.	.	LowGQX	END=145360583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:20
chr1	145360584	.	G	A	39.16	LowGQ;LowGQX	DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=22;MQ0=1;QD=9.79;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,3:4:6.01:70,6,0:22:6:0.750
chr1	145360585	.	G	.	.	LowGQX	END=145360637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:22
chr1	145360638	.	G	.	39.02	LowGQX	DP=5;MQ=25;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:25:9
chr1	145360639	.	T	.	.	LowGQX	END=145360648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:25
chr1	145360649	.	T	A	61.33	LowGQ;LowGQX;SB	DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=30;MQ0=0;QD=20.44;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:9.02:93,9,0:30:9:1.000
chr1	145360650	.	G	C	61.33	LowGQ;LowGQX;SB	DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=30;MQ0=0;QD=20.44;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:9.02:93,9,0:30:9:1.000
chr1	145360651	.	T	.	.	LowGQX	END=145360690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:24
chr1	145360691	.	G	.	.	LowGQX	END=145360699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:23
chr1	145360700	.	C	.	18.38	LowGQX	DP=6;MQ=23;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:3:6:0.29:23:0
chr1	145360701	.	G	.	.	LowGQX	END=145360727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:23
chr1	145361365	.	C	.	.	LowGQX;LowMQ	END=145361372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:15:13
chr1	145361373	.	G	.	.	LowGQX;LowMQ	END=145361396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:21:13
chr1	145361397	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:42:27:15
chr1	145361398	.	T	.	.	LowMQ	END=145361399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:30:14
chr1	145361400	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:45:27:14
chr1	145361401	.	T	.	.	LowMQ	END=145361404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:30:14
chr1	145361405	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:48:27:14
chr1	145361406	.	A	.	.	LowMQ	END=145361408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:30:14
chr1	145361409	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:50:24:14
chr1	145361410	.	C	.	.	LowMQ	END=145361430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:30:14
chr1	145361431	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:66:30:13
chr1	145361432	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:66:27:13
chr1	145361433	.	T	.	.	LowMQ	END=145361435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:30:13
chr1	145361436	.	G	.	.	LowGQX;LowMQ	END=145361438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:24:13
chr1	145361439	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:64:30:13
chr1	145361440	.	T	.	.	LowGQX;LowMQ	END=145361442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:24:13
chr1	145361443	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:64:30:13
chr1	145361444	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:64:27:13
chr1	145361445	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:64:30:13
chr1	145361446	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:64:27:13
chr1	145361447	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:64:30:13
chr1	145361448	.	G	.	.	LowGQX;LowMQ	END=145361450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:24:13
chr1	145361451	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:65:30:13
chr1	145361452	.	T	.	.	LowGQX;LowMQ	END=145361454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:24:13
chr1	145361455	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:65:30:13
chr1	145361456	.	A	.	.	LowGQX;LowMQ	END=145361459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:24:13
chr1	145361460	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:66:30:13
chr1	145361461	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:66:27:13
chr1	145361462	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:65:30:13
chr1	145361463	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:65:2:13
chr1	145361464	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:65:30:13
chr1	145361465	.	A	.	.	LowGQX;LowMQ	END=145361466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:27:13
chr1	145361467	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:64:30:13
chr1	145361468	.	A	.	.	LowGQX;LowMQ	END=145361470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:27:13
chr1	145361471	.	G	.	.	LowMQ	END=145361478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:30:13
chr1	145361479	.	A	.	.	LowGQX;LowMQ	END=145361480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:24:13
chr1	145361481	.	C	.	.	LowMQ	END=145361484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:30:12
chr1	145361485	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:58:27:12
chr1	145361486	.	C	.	.	LowMQ	END=145361488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:30:12
chr1	145361489	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:57:24:12
chr1	145361490	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:56:30:12
chr1	145361491	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:56:27:12
chr1	145361492	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:56:30:12
chr1	145361493	.	T	.	.	LowGQX;LowMQ	END=145361496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:24:12
chr1	145361497	.	C	.	.	LowMQ	END=145361498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:30:12
chr1	145361499	.	A	.	.	LowGQX;LowMQ	END=145361500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:24:12
chr1	145361501	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:54:33:12
chr1	145361502	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:53:27:13
chr1	145361503	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:52:33:13
chr1	145361504	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:52:27:13
chr1	145361505	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:52:33:13
chr1	145361506	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:53:27:13
chr1	145361507	.	T	.	.	LowMQ	END=145361508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:33:13
chr1	145361509	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:54:27:12
chr1	145361510	.	A	.	.	LowMQ	END=145361518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:30:12
chr1	145361519	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:51:27:12
chr1	145361520	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:50:30:13
chr1	145361521	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:50:27:13
chr1	145361522	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:50:30:13
chr1	145361523	.	G	.	.	LowGQX;LowMQ	END=145361524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:24:12
chr1	145362065	.	G	.	.	LowGQX	END=145362099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:37
chr1	145362100	.	T	.	.	LowGQX	END=145362105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:28
chr1	145362106	.	G	.	36	LowGQX	DP=5;MQ=28;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.01:28:6
chr1	145362107	.	G	.	.	LowGQX	END=145362108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:6:24
chr1	145362109	.	G	.	.	LowGQX;LowMQ	END=145362183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:18
chr1	145362184	.	T	.	.	LowGQX	END=145362206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:21
chr1	145362207	.	C	.	.	LowGQX	.	GT	./.
chr1	145362208	.	C	.	.	LowGQX	END=145362214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:21
chr1	145362215	.	A	.	.	LowGQX;LowMQ	END=145362269	GT	./.
chr1	145362895	.	C	.	.	LowGQX	END=145362904	GT	./.
chr1	145362905	.	G	.	.	LowGQX;LowMQ	END=145363054	GT	./.
chr1	145363678	.	G	.	.	LowGQX;LowMQ	END=145363876	GT	./.
chr1	145364514	.	G	.	.	LowGQX;LowMQ	END=145364674	GT	./.
chr1	145365286	.	G	.	.	LowGQX	END=145365287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:33
chr1	145365288	.	C	.	.	LowGQX	.	GT	./.
chr1	145365289	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:33
chr1	145365290	.	C	.	.	LowGQX	END=145365302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:46
chr1	145365303	.	C	.	.	LowGQX	END=145365368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:54
chr1	145365369	.	T	.	.	LowGQX	END=145365452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:56
chr1	145365453	.	A	.	.	LowGQX	END=145365459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	145366155	.	T	.	.	LowGQX;LowMQ	END=145366167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:3:9
chr1	145366168	.	A	.	.	LowGQX;LowMQ	END=145366218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:6:14
chr1	145366219	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:20:3:15
chr1	145366220	.	T	.	.	LowGQX;LowMQ	END=145366253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:6:15
chr1	145366254	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:16:9:17
chr1	145366826	.	G	.	.	LowGQX	END=145366828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:22
chr1	145366829	.	T	.	.	LowGQX	.	GT	./.
chr1	145366830	.	C	.	.	LowGQX	END=145366844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:22
chr1	145366845	.	G	.	.	LowGQX	.	GT	./.
chr1	145366846	.	G	.	33	LowGQX	DP=4;MQ=22;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:22:3
chr1	145366847	.	A	.	.	LowGQX;LowMQ	END=145366848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:19
chr1	145366849	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145366850	.	A	.	.	LowGQX;LowMQ	END=145366856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:19
chr1	145366857	.	G	.	14.48	LowGQX;LowMQ	DP=5;MQ=19;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.12:19:0
chr1	145366858	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:5:3:19
chr1	145366859	.	C	.	33	LowGQX;LowMQ	DP=5;MQ=19;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:19:3
chr1	145366860	.	T	.	.	LowGQX;LowMQ	END=145366869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:19
chr1	145366870	.	C	.	33	LowGQX;LowMQ	DP=5;MQ=19;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:19:3
chr1	145366871	.	A	.	.	LowGQX;LowMQ	END=145366876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:18
chr1	145366877	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	145366878	.	A	.	.	LowGQX;LowMQ	END=145366948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:18
chr1	145366949	.	C	.	.	LowGQX;LowMQ	END=145366999	GT	./.
chr1	145367713	.	G	.	.	PASS	END=145367742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:42:34
chr1	145367743	.	A	.	.	PASS	END=145367748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:39:35
chr1	145367749	.	G	.	.	PASS	END=145367758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:36:35
chr1	145367759	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:13:38
chr1	145367760	.	A	.	.	PASS	END=145367766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:39:37
chr1	145367767	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:30:38
chr1	145367768	.	A	.	.	PASS	END=145367770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:39:39
chr1	145367771	.	G	.	.	PASS	END=145367796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:33:38
chr1	145367797	.	G	.	.	PASS	END=145367807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:36:38
chr1	145367808	.	C	.	.	PASS	END=145367822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:30:37
chr1	145368440	.	G	.	.	LowGQX	END=145368469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:55
chr1	145368470	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:55
chr1	145368471	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:55
chr1	145368472	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:55
chr1	145368473	.	G	C	29.45	LowGQX	BaseQRankSum=-0.386;DP=13;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=55;MQ0=0;MQRankSum=-2.855;QD=2.27;ReadPosRankSum=-0.386;SB=-54.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:9,4:13:59.44:59,0,276:55:29:0.308
chr1	145368474	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:55
chr1	145368475	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:55
chr1	145368476	.	A	.	.	PASS	END=145368482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:55
chr1	145368483	.	A	.	.	LowGQX	END=145368484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:55
chr1	145368485	.	A	.	.	PASS	END=145368486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:55
chr1	145368487	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:55
chr1	145368488	.	A	.	.	PASS	END=145368517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:53
chr1	145368518	.	C	T	26.45	LowGQX;LowQD	BaseQRankSum=0.718;DP=15;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=53;MQ0=0;MQRankSum=-2.154;QD=1.76;ReadPosRankSum=1.371;SB=-51.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:11,4:15:56.43:56,0,323:53:26:0.267
chr1	145368519	.	A	.	.	PASS	END=145368592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:52
chr1	145368593	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:1:53
chr1	145368594	.	C	.	.	PASS	END=145368606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:53
chr1	145368607	.	G	.	.	LowGQX	END=145368609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:53
chr1	145368610	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:54
chr1	145368611	.	A	.	.	LowGQX	END=145368612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:54
chr1	145368613	.	A	.	.	PASS	END=145368616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:54
chr1	145368617	.	G	.	.	LowGQX	END=145368618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:54
chr1	145368619	.	T	.	.	PASS	END=145368620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:54
chr1	145368621	.	T	.	.	LowGQX	END=145368648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:53
chr1	145368649	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:55
chr1	145368650	.	T	.	.	LowGQX	END=145368674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:56
chr1	145368675	.	C	.	.	LowGQX	END=145368684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:57
chr1	145414731	.	A	.	.	PASS	END=145414738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	145414739	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:63:60
chr1	145414740	.	A	.	.	PASS	END=145414781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:93:60
chr1	145414782	.	A	.	.	PASS	END=145414805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	145414806	.	A	.	.	PASS	END=145414885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	145414886	.	A	.	.	PASS	END=145414929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	145415228	.	T	.	.	PASS	END=145415236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	145415237	.	G	.	.	PASS	END=145415261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	145415262	.	C	.	.	PASS	END=145415272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	145415273	.	C	G	732.63	PASS	BaseQRankSum=1.290;DP=59;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=6.6789;MQ=60;MQ0=0;MQRankSum=-0.053;QD=12.42;ReadPosRankSum=-0.084;SB=-25.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,26:59:99:763,0,938:60:99:0.441
chr1	145415274	.	T	.	.	PASS	END=145415303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	145415304	.	C	.	.	PASS	END=145415329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	145415330	.	C	.	.	PASS	END=145415361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	145415362	.	G	.	.	PASS	END=145415397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	145415398	.	G	.	.	PASS	END=145415409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	145415410	.	G	.	.	PASS	END=145415566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr1	145415567	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:235:99:60
chr1	145415568	.	G	.	418.17	PASS	DP=228;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:182:228:99:60:99
chr1	145415569	.	C	.	.	PASS	END=145415584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	145415585	.	T	.	360.76	PASS	DP=207;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:164:207:99:60:99
chr1	145415586	.	T	.	.	PASS	END=145415732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	145415733	.	A	.	.	PASS	END=145415764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	145415765	.	A	.	.	PASS	END=145415798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	145415799	.	C	.	.	PASS	END=145415827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	145415828	.	C	.	.	PASS	END=145415848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	145415849	.	C	.	.	PASS	END=145415864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	145415865	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:60
chr1	145415866	.	C	.	.	PASS	END=145415887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	145415888	.	G	.	.	PASS	END=145415889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	145416262	.	G	.	.	PASS	END=145416292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	145416293	.	T	.	.	PASS	END=145416324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	145416325	.	T	.	.	PASS	END=145416349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	145416350	.	A	.	.	PASS	END=145416364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	145416365	.	A	.	.	PASS	END=145416408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	145416409	.	A	.	.	PASS	END=145416462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:256:99:60
chr1	145416463	.	C	.	.	PASS	END=145416575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:261:99:60
chr1	145416576	.	C	.	.	PASS	END=145416651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr1	145416652	.	A	.	.	PASS	END=145416769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:267:99:60
chr1	145416770	.	A	.	.	PASS	END=145416801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	145416802	.	G	.	.	PASS	END=145416832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	145416833	.	A	.	.	PASS	END=145416869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	145416870	.	T	.	.	PASS	END=145416893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	145416894	.	A	.	.	PASS	END=145416939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	145416940	.	G	.	.	PASS	END=145416958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	145416959	.	A	.	.	PASS	END=145416981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	145416982	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:75:60
chr1	145416983	.	A	.	.	PASS	END=145416987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	145438801	.	T	.	.	LowGQX	END=145439054	GT	./.
chr1	145439508	.	A	.	.	LowGQX	END=145439667	GT	./.
chr1	145439776	.	A	.	.	LowGQX	.	GT	./.
chr1	145439777	.	G	.	.	LowGQX	END=145439798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145439799	.	A	.	.	LowGQX	.	GT	./.
chr1	145439800	.	G	.	.	LowGQX	END=145439815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145439816	.	T	.	.	LowGQX	.	GT	./.
chr1	145439817	.	A	.	.	LowGQX	END=145439819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145439820	.	C	.	.	LowGQX	.	GT	./.
chr1	145439821	.	T	.	.	LowGQX	END=145439833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145439834	.	C	.	.	LowGQX	END=145439835	GT	./.
chr1	145439836	.	T	.	.	LowGQX	END=145439837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145439838	.	T	.	.	LowGQX	.	GT	./.
chr1	145439839	.	C	.	.	LowGQX	END=145439840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145439841	.	T	.	.	LowGQX	.	GT	./.
chr1	145439842	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145439843	.	A	.	.	LowGQX	.	GT	./.
chr1	145439844	.	C	.	.	LowGQX	END=145439864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145439865	.	A	.	.	LowGQX	.	GT	./.
chr1	145439866	.	G	.	.	LowGQX	END=145439871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145439872	.	A	.	.	LowGQX	.	GT	./.
chr1	145439873	.	A	.	.	LowGQX	END=145439874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145439875	.	A	.	.	LowGQX	.	GT	./.
chr1	145439876	.	A	.	.	LowGQX	END=145439877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145439878	.	A	.	.	LowGQX	.	GT	./.
chr1	145439879	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145439880	.	C	.	.	LowGQX	.	GT	./.
chr1	145439881	.	T	.	.	LowGQX	END=145439888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145439889	.	A	.	.	LowGQX	.	GT	./.
chr1	145439890	.	G	.	.	LowGQX	END=145439927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145440036	.	A	.	.	LowGQX	END=145440039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145440040	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	145440041	.	C	.	.	LowGQX	END=145440086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145440087	.	C	.	.	LowGQX	.	GT	./.
chr1	145440088	.	T	.	.	LowGQX	END=145440090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145440091	.	T	.	.	LowGQX	.	GT	./.
chr1	145440092	.	G	.	.	LowGQX	END=145440108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145440109	.	T	.	.	LowGQX	.	GT	./.
chr1	145440110	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145440111	.	C	.	.	LowGQX	.	GT	./.
chr1	145440112	.	T	.	.	LowGQX	END=145440125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145440126	.	A	.	.	LowGQX	.	GT	./.
chr1	145440127	.	A	.	.	LowGQX	END=145440129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145440130	.	A	.	.	LowGQX	.	GT	./.
chr1	145440131	.	T	.	.	LowGQX	END=145440137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145440138	.	A	.	.	LowGQX	.	GT	./.
chr1	145440139	.	A	.	.	LowGQX	END=145440142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145440267	.	A	.	.	LowGQX	END=145440269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145440270	.	T	.	.	LowGQX	.	GT	./.
chr1	145440271	.	G	.	.	LowGQX	END=145440353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145440354	.	T	.	.	LowGQX	END=145440527	GT	./.
chr1	145440630	.	A	.	.	LowGQX	END=145440790	GT	./.
chr1	145440900	.	A	.	.	LowGQX	END=145440908	GT	./.
chr1	145440909	.	C	.	.	LowGQX	END=145441055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145441151	.	C	.	.	LowGQX	END=145441250	GT	./.
chr1	145456631	.	C	.	.	LowGQX	END=145456730	GT	./.
chr1	145456989	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145456990	.	C	.	.	LowGQX	END=145456993	GT	./.
chr1	145456994	.	T	.	.	LowGQX	END=145456999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457000	.	T	.	.	LowGQX	.	GT	./.
chr1	145457001	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457002	.	C	.	.	LowGQX	.	GT	./.
chr1	145457003	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457004	.	T	.	.	LowGQX	.	GT	./.
chr1	145457005	.	C	.	.	LowGQX	END=145457007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457008	.	C	.	.	LowGQX	END=145457009	GT	./.
chr1	145457010	.	T	.	.	LowGQX	END=145457014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457015	.	C	.	.	LowGQX	.	GT	./.
chr1	145457016	.	T	.	.	LowGQX	END=145457025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457026	.	C	.	.	LowGQX	END=145457027	GT	./.
chr1	145457028	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457029	.	C	.	.	LowGQX	END=145457030	GT	./.
chr1	145457031	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457032	.	C	.	.	LowGQX	END=145457033	GT	./.
chr1	145457034	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457035	.	C	.	.	LowGQX	END=145457037	GT	./.
chr1	145457038	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457039	.	C	.	.	LowGQX	.	GT	./.
chr1	145457040	.	T	.	.	LowGQX	END=145457044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457045	.	T	.	.	LowGQX	.	GT	./.
chr1	145457046	.	T	.	.	LowGQX	END=145457047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457048	.	T	.	.	LowGQX	.	GT	./.
chr1	145457049	.	T	.	.	LowGQX	END=145457050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457051	.	T	.	.	LowGQX	.	GT	./.
chr1	145457052	.	T	.	.	LowGQX	END=145457055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457056	.	T	.	.	LowGQX	END=145457057	GT	./.
chr1	145457058	.	T	.	.	LowGQX	END=145457059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457060	.	C	.	.	LowGQX	.	GT	./.
chr1	145457061	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457062	.	C	.	.	LowGQX	END=145457063	GT	./.
chr1	145457064	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457065	.	C	.	.	LowGQX	END=145457067	GT	./.
chr1	145457068	.	C	.	.	LowGQX	END=145457074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457075	.	A	.	.	LowGQX	.	GT	./.
chr1	145457076	.	G	.	.	LowGQX	END=145457078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457079	.	A	.	.	LowGQX	END=145457080	GT	./.
chr1	145457081	.	T	.	.	LowGQX	END=145457082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457083	.	C	.	.	LowGQX	.	GT	./.
chr1	145457084	.	T	.	.	LowGQX	END=145457089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457090	.	C	.	.	LowGQX	END=145457091	GT	./.
chr1	145457092	.	T	.	.	LowGQX	END=145457103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457104	.	T	.	.	LowGQX	.	GT	./.
chr1	145457105	.	C	.	.	LowGQX	END=145457106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145457223	.	A	.	.	LowGQX	END=145457322	GT	./.
chr1	145457527	.	C	.	.	LowGQX	END=145457626	GT	./.
chr1	145457920	.	G	.	.	LowGQX	END=145458019	GT	./.
chr1	145459650	.	A	.	.	LowGQX	END=145459783	GT	./.
chr1	145460054	.	C	.	.	LowGQX	END=145460221	GT	./.
chr1	145460222	.	T	.	.	LowGQX	END=145460264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145473327	.	C	.	.	LowGQX	END=145473998	GT	./.
chr1	145473999	.	A	.	.	LowGQX	END=145474004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474005	.	C	.	.	LowGQX	.	GT	./.
chr1	145474006	.	C	.	.	LowGQX	END=145474013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474014	.	A	.	.	LowGQX	.	GT	./.
chr1	145474015	.	G	.	.	LowGQX	END=145474017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474018	.	G	.	.	LowGQX	.	GT	./.
chr1	145474019	.	C	.	.	LowGQX	END=145474020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474021	.	C	.	.	LowGQX	.	GT	./.
chr1	145474022	.	C	.	.	LowGQX	END=145474044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474045	.	A	.	.	LowGQX	.	GT	./.
chr1	145474046	.	A	.	.	LowGQX	END=145474057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474058	.	A	.	.	LowGQX	.	GT	./.
chr1	145474059	.	G	.	.	LowGQX	END=145474082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474083	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	145474084	.	A	.	.	LowGQX	END=145474092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145474093	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	145474094	.	C	.	.	LowGQX	END=145474095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145474096	.	T	.	.	LowGQX	.	GT	./.
chr1	145474097	.	C	.	.	LowGQX	END=145474123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474124	.	C	.	.	LowGQX	END=145474125	GT	./.
chr1	145474126	.	G	.	.	LowGQX	END=145474147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474148	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	145474149	.	A	.	.	LowGQX	END=145474210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474211	.	C	.	.	LowGQX	END=145474564	GT	./.
chr1	145474565	.	C	.	.	LowGQX	END=145474567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474568	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	145474569	.	T	.	.	LowGQX	END=145474585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474586	.	A	.	.	LowGQX	.	GT	./.
chr1	145474587	.	C	.	.	LowGQX	END=145474598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145474599	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	145474600	.	C	.	.	LowGQX	END=145474608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145474609	.	T	.	.	LowGQX	.	GT	./.
chr1	145474610	.	C	.	.	LowGQX	END=145474622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145474623	.	C	.	.	LowGQX	.	GT	./.
chr1	145474624	.	C	.	.	LowGQX	END=145474626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474627	.	C	.	.	LowGQX	.	GT	./.
chr1	145474628	.	C	.	.	LowGQX	END=145474629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474630	.	T	.	.	LowGQX	.	GT	./.
chr1	145474631	.	C	.	.	LowGQX	END=145474633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474634	.	A	.	.	LowGQX	.	GT	./.
chr1	145474635	.	T	.	.	LowGQX	END=145474650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474651	.	A	.	.	LowGQX	.	GT	./.
chr1	145474652	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474653	.	A	.	.	LowGQX	END=145474654	GT	./.
chr1	145474655	.	C	.	.	LowGQX	END=145474684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474685	.	C	.	.	LowGQX	.	GT	./.
chr1	145474686	.	C	.	.	LowGQX	END=145474703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474704	.	C	.	.	LowGQX	.	GT	./.
chr1	145474705	.	A	.	.	LowGQX	END=145474708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474709	.	T	.	.	LowGQX	.	GT	./.
chr1	145474710	.	C	.	.	LowGQX	END=145474733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474734	.	T	.	.	LowGQX	END=145474787	GT	./.
chr1	145474788	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474789	.	T	.	.	LowGQX	.	GT	./.
chr1	145474790	.	C	.	.	LowGQX	END=145474799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474800	.	C	.	.	LowGQX	END=145474801	GT	./.
chr1	145474802	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474803	.	G	.	.	LowGQX	.	GT	./.
chr1	145474804	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474805	.	G	.	.	LowGQX	.	GT	./.
chr1	145474806	.	A	.	.	LowGQX	END=145474812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474813	.	G	.	.	LowGQX	.	GT	./.
chr1	145474814	.	C	.	.	LowGQX	END=145474816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145474817	.	T	.	.	LowGQX	.	GT	./.
chr1	145474818	.	G	.	.	LowGQX	END=145474821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145477146	.	A	.	.	LowGQX	END=145477455	GT	./.
chr1	145487302	.	A	.	.	LowGQX	END=145487469	GT	./.
chr1	145492233	.	A	.	.	LowGQX	END=145492377	GT	./.
chr1	145497391	.	A	.	.	LowGQX	END=145497490	GT	./.
chr1	145498092	.	T	.	.	LowGQX	END=145498191	GT	./.
chr1	145498534	.	A	.	.	LowGQX	END=145498648	GT	./.
chr1	145498649	.	G	.	.	LowGQX	END=145498659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145498660	.	A	.	.	LowGQX	.	GT	./.
chr1	145498661	.	G	.	.	LowGQX	END=145498724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145498725	.	A	.	.	LowGQX	.	GT	./.
chr1	145498726	.	T	.	.	LowGQX	END=145498780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145507591	.	A	.	.	PASS	END=145507693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:256:99:60
chr1	145507694	.	G	.	.	PASS	END=145507750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	145507996	.	T	.	.	PASS	END=145508092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	145508093	.	G	.	.	PASS	END=145508095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	145508196	.	G	.	.	PASS	END=145508291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	145508292	.	A	.	.	PASS	END=145508295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	145508473	.	A	.	.	PASS	END=145508506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	145508507	.	G	.	.	PASS	END=145508588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	145508589	.	A	.	.	PASS	END=145508613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	145508914	.	A	.	.	PASS	END=145508960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	145508961	.	G	.	.	PASS	END=145508988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	145508989	.	T	.	.	PASS	END=145509054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	145509139	.	C	.	.	PASS	END=145509223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:56
chr1	145509224	.	T	.	.	PASS	END=145509238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:55
chr1	145509848	.	A	.	.	LowGQX	END=145509859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	145509860	.	T	.	.	LowGQX	.	GT	./.
chr1	145509861	.	C	.	.	LowGQX	END=145509879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	145509880	.	T	.	.	LowGQX	.	GT	./.
chr1	145509881	.	G	.	.	LowGQX	END=145509934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	145509935	.	T	.	.	LowGQX	.	GT	./.
chr1	145509936	.	C	.	.	LowGQX	END=145509996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	145509997	.	T	.	.	LowGQX	END=145510127	GT	./.
chr1	145510128	.	G	.	.	LowGQX;LowMQ	END=145510196	GT	./.
chr1	145510197	.	A	.	.	LowGQX;LowMQ	END=145510215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:16
chr1	145510216	.	C	.	.	LowGQX	END=145510287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	145510727	.	C	.	.	LowGQX	END=145510861	GT	./.
chr1	145510862	.	G	.	.	LowGQX	END=145510938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:49
chr1	145515188	.	C	.	.	LowGQX	END=145515419	GT	./.
chr1	145515634	.	C	.	.	LowGQX	END=145515642	GT	./.
chr1	145515643	.	G	.	.	LowGQX	END=145515654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145515655	.	T	.	.	LowGQX	.	GT	./.
chr1	145515656	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145515657	.	C	.	.	LowGQX	.	GT	./.
chr1	145515658	.	C	.	.	LowGQX	END=145515667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145515668	.	A	.	.	LowGQX	.	GT	./.
chr1	145515669	.	C	.	.	LowGQX	END=145515671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145515672	.	C	.	.	LowGQX	.	GT	./.
chr1	145515673	.	A	.	.	LowGQX	END=145515686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145515687	.	C	.	.	LowGQX	.	GT	./.
chr1	145515688	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145515689	.	T	.	.	LowGQX	END=145515690	GT	./.
chr1	145515691	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145515692	.	A	.	.	LowGQX	.	GT	./.
chr1	145515693	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145515694	.	A	.	.	LowGQX	.	GT	./.
chr1	145515695	.	C	.	.	LowGQX	END=145515696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145515697	.	T	.	.	LowGQX	.	GT	./.
chr1	145515698	.	G	.	.	LowGQX	END=145515703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145515704	.	C	.	.	LowGQX	END=145515705	GT	./.
chr1	145515706	.	G	.	.	LowGQX	END=145515707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145515708	.	A	.	.	LowGQX	.	GT	./.
chr1	145515709	.	G	.	.	LowGQX	END=145515710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145515711	.	G	.	.	LowGQX	END=145515712	GT	./.
chr1	145515713	.	A	.	.	LowGQX	END=145515714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145515715	.	C	.	.	LowGQX	END=145515717	GT	./.
chr1	145515718	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145515719	.	G	.	.	LowGQX	.	GT	./.
chr1	145515720	.	G	.	.	LowGQX	END=145515724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145515725	.	T	.	.	LowGQX	.	GT	./.
chr1	145515726	.	G	.	.	LowGQX	END=145515729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145515730	.	T	.	.	LowGQX	END=145515731	GT	./.
chr1	145515732	.	T	.	.	LowGQX	END=145515733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145516379	.	C	.	.	PASS	END=145516424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	145516425	.	G	.	.	PASS	END=145516459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	145516460	.	C	.	.	PASS	END=145516478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:59
chr1	145516541	.	A	.	.	PASS	END=145516569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:98:60
chr1	145516570	.	A	.	.	PASS	END=145516631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:77:60
chr1	145516632	.	T	.	.	PASS	END=145516696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	145516697	.	T	.	.	PASS	END=145516700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	145517271	.	A	.	.	PASS	END=145517294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	145517295	.	C	.	.	PASS	END=145517309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	145517310	.	C	.	.	PASS	END=145517329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	145517330	.	T	.	.	PASS	END=145517390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	145518069	.	A	.	.	PASS	END=145518098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	145518099	.	C	.	.	PASS	END=145518239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	145518240	.	G	.	.	PASS	END=145518270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	145518271	.	A	.	.	PASS	END=145518274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	145522512	.	A	.	.	PASS	END=145522610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	145522611	.	A	.	.	PASS	END=145522677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	145522678	.	G	.	.	PASS	END=145522738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	145522739	.	C	.	.	PASS	END=145522885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	145522886	.	C	.	.	PASS	END=145522902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	145522903	.	T	.	.	PASS	END=145522921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	145525042	.	A	.	.	LowGQX	.	GT	./.
chr1	145525043	.	T	.	.	LowGQX	END=145525046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145525047	.	G	.	.	LowGQX	.	GT	./.
chr1	145525048	.	G	.	.	LowGQX	END=145525050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145525051	.	A	.	.	LowGQX	.	GT	./.
chr1	145525052	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145525053	.	A	.	.	LowGQX	.	GT	./.
chr1	145525054	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145525055	.	A	.	.	LowGQX	.	GT	./.
chr1	145525056	.	C	.	.	LowGQX	END=145525058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145525059	.	A	.	.	LowGQX	.	GT	./.
chr1	145525060	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145525061	.	C	.	.	LowGQX	END=145525129	GT	./.
chr1	145525130	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145525131	.	A	.	.	LowGQX	.	GT	./.
chr1	145525132	.	C	.	.	LowGQX	END=145525137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145525138	.	G	.	.	LowGQX	.	GT	./.
chr1	145525139	.	G	.	.	LowGQX	END=145525141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145527611	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145527612	.	G	.	.	LowGQX	END=145527613	GT	./.
chr1	145527614	.	T	.	.	LowGQX	END=145527617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145527618	.	T	.	.	LowGQX	.	GT	./.
chr1	145527619	.	G	.	.	LowGQX	END=145527635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145527636	.	G	.	.	LowGQX	.	GT	./.
chr1	145527637	.	A	.	.	LowGQX	END=145527638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145527639	.	G	.	.	LowGQX	END=145527640	GT	./.
chr1	145527641	.	A	.	.	LowGQX	END=145527681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145527682	.	T	.	.	LowGQX	END=145527726	GT	./.
chr1	145527873	.	T	.	.	LowGQX	END=145528039	GT	./.
chr1	145528252	.	A	.	.	LowGQX	END=145528299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528300	.	C	.	.	LowGQX	.	GT	./.
chr1	145528301	.	C	.	.	LowGQX	END=145528306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528307	.	A	.	.	LowGQX	.	GT	./.
chr1	145528308	.	T	.	.	LowGQX	END=145528317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528318	.	A	.	.	LowGQX	.	GT	./.
chr1	145528319	.	G	.	.	LowGQX	END=145528323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528324	.	A	.	.	LowGQX	.	GT	./.
chr1	145528325	.	G	.	.	LowGQX	END=145528349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528350	.	G	.	.	LowGQX	END=145528351	GT	./.
chr1	145528352	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528353	.	A	.	.	LowGQX	.	GT	./.
chr1	145528354	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528568	.	A	.	.	LowGQX	END=145528571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528572	.	C	.	.	LowGQX	.	GT	./.
chr1	145528573	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528574	.	G	.	.	LowGQX	.	GT	./.
chr1	145528575	.	T	.	.	LowGQX	END=145528577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528578	.	C	.	.	LowGQX	END=145528579	GT	./.
chr1	145528580	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528581	.	T	.	.	LowGQX	.	GT	./.
chr1	145528582	.	C	.	.	LowGQX	END=145528583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528584	.	C	.	.	LowGQX	.	GT	./.
chr1	145528585	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528586	.	G	.	.	LowGQX	.	GT	./.
chr1	145528587	.	G	.	.	LowGQX	END=145528591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528592	.	G	.	.	LowGQX	.	GT	./.
chr1	145528593	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528594	.	G	.	.	LowGQX	.	GT	./.
chr1	145528595	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528596	.	T	.	.	LowGQX	.	GT	./.
chr1	145528597	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528598	.	G	.	.	LowGQX	.	GT	./.
chr1	145528599	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528600	.	G	.	.	LowGQX	.	GT	./.
chr1	145528601	.	G	.	.	LowGQX	END=145528603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528604	.	G	.	.	LowGQX	END=145528605	GT	./.
chr1	145528606	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528607	.	C	.	.	LowGQX	.	GT	./.
chr1	145528608	.	T	.	.	LowGQX	END=145528613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528614	.	C	.	.	LowGQX	END=145528616	GT	./.
chr1	145528617	.	T	.	.	LowGQX	END=145528618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528619	.	C	.	.	LowGQX	.	GT	./.
chr1	145528620	.	T	.	.	LowGQX	END=145528621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528622	.	G	.	.	LowGQX	END=145528623	GT	./.
chr1	145528624	.	A	.	.	LowGQX	END=145528629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528630	.	G	.	.	LowGQX	.	GT	./.
chr1	145528631	.	C	.	.	LowGQX	END=145528633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528634	.	G	.	.	LowGQX	.	GT	./.
chr1	145528635	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528636	.	G	.	.	LowGQX	END=145528638	GT	./.
chr1	145528639	.	G	.	.	LowGQX	END=145528641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528642	.	G	.	.	LowGQX	.	GT	./.
chr1	145528643	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145528644	.	T	.	.	LowGQX	.	GT	./.
chr1	145528645	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145528646	.	C	.	.	LowGQX	.	GT	./.
chr1	145528647	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145528648	.	T	.	.	LowGQX	.	GT	./.
chr1	145528649	.	T	.	.	LowGQX	END=145528650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145528651	.	C	.	.	LowGQX	.	GT	./.
chr1	145528652	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145528653	.	G	.	.	LowGQX	END=145528654	GT	./.
chr1	145528655	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528656	.	T	.	.	LowGQX	.	GT	./.
chr1	145528657	.	C	.	.	LowGQX	END=145528658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528659	.	G	.	.	LowGQX	END=145528661	GT	./.
chr1	145528662	.	A	.	.	LowGQX	END=145528665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528666	.	C	.	.	LowGQX	.	GT	./.
chr1	145528667	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528668	.	G	.	.	LowGQX	.	GT	./.
chr1	145528669	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528670	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	145528671	.	A	.	.	LowGQX	END=145528672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528673	.	C	.	.	LowGQX	END=145528674	GT	./.
chr1	145528675	.	A	.	.	LowGQX	END=145528678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528679	.	C	.	.	LowGQX	.	GT	./.
chr1	145528680	.	C	.	.	LowGQX	END=145528683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145528684	.	C	.	.	LowGQX	.	GT	./.
chr1	145528685	.	G	.	.	LowGQX	END=145528686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145530265	.	A	.	.	LowGQX	END=145530277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	145530278	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	145530279	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	145530280	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	145530281	.	A	.	.	LowGQX	END=145530283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	145530284	.	G	.	.	LowGQX	END=145530307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	145530308	.	T	.	.	LowGQX	END=145530323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	145530324	.	C	.	.	LowGQX	END=145530328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	145530329	.	T	.	.	LowGQX	END=145530330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	145530331	.	T	.	.	LowGQX	END=145530334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	145530335	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	145530336	.	T	.	.	LowGQX	END=145530345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	145530346	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	145530347	.	C	.	.	LowGQX	END=145530354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	145530355	.	A	.	.	LowGQX	END=145530356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	145530357	.	T	.	.	LowGQX	END=145530365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	145530366	.	A	.	.	LowGQX	END=145530383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	145530384	.	A	.	.	LowGQX	END=145530386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	145530387	.	A	.	.	LowGQX	END=145530396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	145530876	.	A	.	.	LowGQX	END=145531028	GT	./.
chr1	145532113	.	A	.	.	LowGQX	END=145532267	GT	./.
chr1	145532455	.	A	.	.	LowGQX	END=145532624	GT	./.
chr1	145532744	.	T	.	.	LowGQX	END=145532746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145532747	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	145532748	.	A	.	.	LowGQX	END=145532750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145532751	.	A	.	.	LowGQX	.	GT	./.
chr1	145532752	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145532753	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	145532754	.	A	.	.	LowGQX	END=145532755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145532756	.	G	.	.	LowGQX	.	GT	./.
chr1	145532757	.	G	.	.	LowGQX	END=145532762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145532763	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	145532764	.	T	.	.	LowGQX	END=145532766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145532767	.	A	.	.	LowGQX	END=145532843	GT	./.
chr1	145533053	.	A	.	.	LowGQX	END=145533201	GT	./.
chr1	145533410	.	A	.	.	LowGQX	END=145533515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145533516	.	A	.	.	LowGQX	.	GT	./.
chr1	145533517	.	A	.	.	LowGQX	END=145533541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145533542	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	145533543	.	A	.	.	LowGQX	END=145533562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145533796	.	A	.	.	LowGQX	END=145533816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145533817	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	145533818	.	T	.	.	LowGQX	END=145533870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145533871	.	T	.	.	LowGQX	END=145533943	GT	./.
chr1	145534081	.	A	.	.	LowGQX	END=145534192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145534193	.	T	.	.	LowGQX	.	GT	./.
chr1	145534194	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145534195	.	T	.	.	LowGQX	.	GT	./.
chr1	145534196	.	G	.	.	LowGQX	END=145534200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145534201	.	T	.	.	LowGQX	.	GT	./.
chr1	145534202	.	G	.	.	LowGQX	END=145534219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145534220	.	T	.	.	LowGQX	.	GT	./.
chr1	145534221	.	G	.	.	LowGQX	END=145534247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145534248	.	C	.	.	LowGQX	END=145534288	GT	./.
chr1	145534887	.	A	.	.	LowGQX	END=145535021	GT	./.
chr1	145535733	.	A	.	.	LowGQX	END=145535961	GT	./.
chr1	145535965	.	C	.	.	LowGQX	END=145536142	GT	./.
chr1	145536851	.	A	.	.	LowGQX	END=145536922	GT	./.
chr1	145536923	.	G	.	.	LowGQX	END=145536968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145537169	.	C	.	.	LowGQX	END=145537268	GT	./.
chr1	145537421	.	A	.	.	LowGQX	END=145537566	GT	./.
chr1	145537734	.	C	.	.	LowGQX	END=145537833	GT	./.
chr1	145537978	.	C	.	.	LowGQX	END=145538077	GT	./.
chr1	145538213	.	T	.	.	LowGQX	END=145538312	GT	./.
chr1	145538717	.	C	.	.	LowGQX	END=145538719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145538720	.	A	.	.	LowGQX	.	GT	./.
chr1	145538721	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145538722	.	A	.	.	LowGQX	.	GT	./.
chr1	145538723	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145538724	.	T	.	.	LowGQX	.	GT	./.
chr1	145538725	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145538726	.	A	.	.	LowGQX	END=145538816	GT	./.
chr1	145538978	.	A	.	.	LowGQX	END=145538980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145538981	.	T	.	.	LowGQX	END=145539095	GT	./.
chr1	145539356	.	T	.	.	LowGQX	END=145539455	GT	./.
chr1	145539681	.	A	.	.	LowGQX	END=145539699	GT	./.
chr1	145539700	.	G	.	.	LowGQX	END=145539798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145541439	.	A	.	.	LowGQX	END=145541528	GT	./.
chr1	145541529	.	G	.	.	LowGQX	END=145541538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145541800	.	A	.	.	LowGQX	END=145541917	GT	./.
chr1	145542196	.	T	.	.	LowGQX	END=145542295	GT	./.
chr1	145549287	.	T	.	.	LowGQX	END=145549386	GT	./.
chr1	145555690	.	A	.	.	LowGQX	END=145555824	GT	./.
chr1	145556596	.	G	.	.	LowGQX	END=145556644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145556645	.	T	.	.	LowGQX	END=145556695	GT	./.
chr1	145557031	.	C	.	.	LowGQX	END=145557130	GT	./.
chr1	145558187	.	T	.	.	LowGQX	END=145558286	GT	./.
chr1	145558428	.	C	.	.	LowGQX	END=145558527	GT	./.
chr1	145558833	.	A	.	.	LowGQX	END=145558836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145558837	.	T	.	.	LowGQX	.	GT	./.
chr1	145558838	.	G	.	.	LowGQX	END=145558845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145558846	.	A	.	.	LowGQX	END=145558850	GT	./.
chr1	145558851	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145558852	.	G	.	.	LowGQX	.	GT	./.
chr1	145558853	.	A	.	.	LowGQX	END=145558854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145558855	.	G	.	.	LowGQX	.	GT	./.
chr1	145558856	.	A	.	.	LowGQX	END=145558864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145558865	.	C	.	.	LowGQX	END=145558866	GT	./.
chr1	145558867	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145558868	.	G	.	.	LowGQX	.	GT	./.
chr1	145558869	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145558870	.	T	.	.	LowGQX	.	GT	./.
chr1	145558871	.	G	.	.	LowGQX	END=145558873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145558874	.	C	.	.	LowGQX	.	GT	./.
chr1	145558875	.	A	.	.	LowGQX	END=145558876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145558877	.	G	.	.	LowGQX	.	GT	./.
chr1	145558878	.	C	.	.	LowGQX	END=145558886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145558887	.	G	.	.	LowGQX	.	GT	./.
chr1	145558888	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145558889	.	T	.	.	LowGQX	.	GT	./.
chr1	145558890	.	C	.	.	LowGQX	END=145558895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145558896	.	T	.	.	LowGQX	.	GT	./.
chr1	145558897	.	G	.	.	LowGQX	END=145558902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145558903	.	G	.	.	LowGQX	.	GT	./.
chr1	145558904	.	C	.	.	LowGQX	END=145558907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145558908	.	G	.	.	LowGQX	.	GT	./.
chr1	145558909	.	C	.	.	LowGQX	END=145558912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145558913	.	C	.	.	LowGQX	.	GT	./.
chr1	145558914	.	G	.	.	LowGQX	END=145558915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145558916	.	G	.	.	LowGQX	END=145558917	GT	./.
chr1	145558918	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145558919	.	A	.	.	LowGQX	.	GT	./.
chr1	145558920	.	A	.	.	LowGQX	END=145558943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145560073	.	A	.	.	LowGQX	END=145560261	GT	./.
chr1	145560858	.	T	.	.	LowGQX	END=145560957	GT	./.
chr1	145561094	.	A	.	.	LowGQX	END=145563023	GT	./.
chr1	145563024	.	G	.	.	LowGQX	END=145563108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145566681	.	C	.	.	LowGQX	END=145566780	GT	./.
chr1	145567013	.	T	.	.	LowGQX	END=145567112	GT	./.
chr1	145567676	.	C	.	.	LowGQX	END=145567695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145567696	.	T	.	.	LowGQX	END=145567766	GT	./.
chr1	145567767	.	C	.	.	LowGQX	END=145567775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145575981	.	A	.	.	LowGQX	END=145576140	GT	./.
chr1	145578060	.	A	.	.	LowGQX	END=145578210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145578211	.	A	.	.	LowGQX	.	GT	./.
chr1	145578212	.	G	.	.	LowGQX	END=145578265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145578266	.	C	.	.	LowGQX	END=145578301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	145578302	.	T	.	.	LowGQX	END=145578349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145578350	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	145578351	.	C	.	.	LowGQX	END=145578377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145578378	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	145578379	.	C	.	.	LowGQX	END=145578383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145578384	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	145578385	.	C	.	.	LowGQX	END=145578402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145578403	.	T	.	.	LowGQX	END=145578481	GT	./.
chr1	145578630	.	T	.	.	LowGQX	END=145578641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145578642	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	145578643	.	C	.	.	LowGQX	END=145578699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145578700	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	145578701	.	G	.	.	LowGQX	END=145578722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145578723	.	T	.	.	LowGQX	.	GT	./.
chr1	145578724	.	A	.	.	LowGQX	END=145578729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145578926	.	T	.	.	LowGQX	.	GT	./.
chr1	145578927	.	C	.	.	LowGQX	END=145579025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145579178	.	T	.	.	LowGQX	END=145579337	GT	./.
chr1	145580186	.	A	.	.	LowGQX	END=145580372	GT	./.
chr1	145580373	.	G	.	.	LowGQX	END=145580374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145580375	.	A	.	.	LowGQX	.	GT	./.
chr1	145580376	.	C	.	.	LowGQX	END=145580396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145580397	.	G	.	.	LowGQX	.	GT	./.
chr1	145580398	.	G	.	.	LowGQX	END=145580416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145580417	.	G	A	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	145580418	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145580503	.	A	.	.	LowGQX	END=145580533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145580534	.	G	.	.	LowGQX	END=145580612	GT	./.
chr1	145581169	.	A	.	.	LowGQX	END=145581184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	145581185	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	145581186	.	G	.	.	LowGQX	END=145581255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145581256	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	145581257	.	T	.	.	LowGQX	END=145581268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	145581402	.	A	.	.	LowGQX	END=145581403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145581404	.	C	.	.	LowGQX	.	GT	./.
chr1	145581405	.	T	.	.	LowGQX	END=145581415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145581416	.	C	.	.	LowGQX	.	GT	./.
chr1	145581417	.	G	.	.	LowGQX	END=145581425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145581426	.	T	.	.	LowGQX	.	GT	./.
chr1	145581427	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145581428	.	C	.	.	LowGQX	END=145581429	GT	./.
chr1	145581430	.	T	.	.	LowGQX	END=145581434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145581435	.	G	.	.	LowGQX	END=145581436	GT	./.
chr1	145581437	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145581438	.	C	.	.	LowGQX	.	GT	./.
chr1	145581439	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145581440	.	C	.	.	LowGQX	END=145581441	GT	./.
chr1	145581442	.	C	.	.	LowGQX	END=145581449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145581450	.	C	.	.	LowGQX	.	GT	./.
chr1	145581451	.	C	.	.	LowGQX	END=145581460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145581461	.	A	.	.	LowGQX	END=145581517	GT	./.
chr1	145581518	.	C	.	.	LowGQX	END=145581566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145583913	.	A	.	.	LowGQX	END=145584050	GT	./.
chr1	145584127	.	A	.	.	LowGQX	END=145584299	GT	./.
chr1	145584480	.	A	.	.	LowGQX	END=145584617	GT	./.
chr1	145584768	.	A	.	.	LowGQX	END=145584867	GT	./.
chr1	145585354	.	A	.	.	LowGQX	END=145585395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145585396	.	A	.	.	LowGQX	.	GT	./.
chr1	145585397	.	T	.	.	LowGQX	END=145585398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145585399	.	C	.	.	LowGQX	.	GT	./.
chr1	145585400	.	C	.	.	LowGQX	END=145585426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145585427	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	145585428	.	A	.	.	LowGQX	END=145585439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145585440	.	T	.	.	LowGQX	.	GT	./.
chr1	145585441	.	T	.	.	LowGQX	END=145585461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145585462	.	C	.	.	LowGQX	END=145585463	GT	./.
chr1	145585464	.	C	.	.	LowGQX	END=145585469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145585470	.	A	.	.	LowGQX	.	GT	./.
chr1	145585471	.	G	.	.	LowGQX	END=145585514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145585515	.	A	.	.	LowGQX	.	GT	./.
chr1	145585516	.	G	.	.	LowGQX	END=145585527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145585528	.	C	.	.	LowGQX	.	GT	./.
chr1	145585529	.	C	.	.	LowGQX	END=145585564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145585565	.	C	.	.	LowGQX	.	GT	./.
chr1	145585566	.	C	.	.	LowGQX	END=145585571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145585572	.	T	.	.	LowGQX	.	GT	./.
chr1	145585573	.	C	.	.	LowGQX	END=145585619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145585620	.	T	.	.	LowGQX	END=145585624	GT	./.
chr1	145586587	.	C	.	.	LowGQX	END=145586693	GT	./.
chr1	145586802	.	A	.	.	LowGQX	END=145586958	GT	./.
chr1	145587347	.	A	.	.	LowGQX	END=145587487	GT	./.
chr1	145587718	.	A	.	.	LowGQX	END=145587732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145587733	.	T	.	.	LowGQX	.	GT	./.
chr1	145587734	.	G	.	.	LowGQX	END=145587737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145587738	.	T	.	.	LowGQX	.	GT	./.
chr1	145587739	.	T	.	.	LowGQX	END=145587742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145587743	.	G	.	.	LowGQX	.	GT	./.
chr1	145587744	.	G	.	.	LowGQX	END=145587774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145587775	.	T	.	.	LowGQX	END=145587776	GT	./.
chr1	145587777	.	G	.	.	LowGQX	END=145587798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145587799	.	A	.	.	LowGQX	END=145587820	GT	./.
chr1	145588375	.	C	.	.	LowGQX	END=145588474	GT	./.
chr1	145588606	.	T	.	.	LowGQX	END=145589429	GT	./.
chr1	145592627	.	A	.	.	LowGQX	END=145592713	GT	./.
chr1	145592714	.	A	.	.	LowGQX	END=145592721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145592722	.	A	.	.	LowGQX	.	GT	./.
chr1	145592723	.	C	.	.	LowGQX	END=145592726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145592727	.	A	.	.	LowGQX	END=145592728	GT	./.
chr1	145592729	.	C	.	.	LowGQX	END=145592730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145592731	.	G	.	.	LowGQX	.	GT	./.
chr1	145592732	.	G	.	.	LowGQX	END=145592744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145592745	.	T	.	.	LowGQX	.	GT	./.
chr1	145592746	.	C	.	.	LowGQX	END=145592751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145592752	.	G	.	.	LowGQX	.	GT	./.
chr1	145592753	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145592754	.	A	.	.	LowGQX	END=145592755	GT	./.
chr1	145592756	.	C	.	.	LowGQX	END=145592763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145592764	.	C	.	.	LowGQX	END=145592765	GT	./.
chr1	145592766	.	T	.	.	LowGQX	END=145592767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145592768	.	C	.	.	LowGQX	.	GT	./.
chr1	145592769	.	A	.	.	LowGQX	END=145592772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145592773	.	T	.	.	LowGQX	.	GT	./.
chr1	145592774	.	G	.	.	LowGQX	END=145592775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145592776	.	G	.	.	LowGQX	.	GT	./.
chr1	145592777	.	T	.	.	LowGQX	END=145592780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145594037	.	A	.	.	LowGQX	END=145594106	GT	./.
chr1	145594107	.	T	.	.	LowGQX	END=145594190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145594920	.	T	.	.	LowGQX	END=145595019	GT	./.
chr1	145595117	.	A	.	.	LowGQX	END=145595182	GT	./.
chr1	145595183	.	G	.	.	LowGQX	END=145595222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145596902	.	A	.	.	LowGQX	END=145597012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145597013	.	T	.	.	LowGQX	END=145597056	GT	./.
chr1	145597442	.	T	.	.	LowGQX	END=145597468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	145597469	.	G	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	145597470	.	G	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	145597471	.	A	.	.	LowGQX	END=145597474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	145597475	.	G	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	145597476	.	A	.	.	LowGQX	END=145597481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	145597482	.	G	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	145597483	.	T	.	.	LowGQX	END=145597519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	145597520	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	145597521	.	G	.	.	LowGQX	END=145597594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145598220	.	T	.	.	LowGQX	END=145598257	GT	./.
chr1	145598258	.	C	.	.	LowGQX	END=145598293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145598294	.	A	.	.	LowGQX	.	GT	./.
chr1	145598295	.	G	.	.	LowGQX	END=145598326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145598327	.	C	.	.	LowGQX	.	GT	./.
chr1	145598328	.	G	.	.	LowGQX	END=145598335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145598336	.	C	.	.	LowGQX	.	GT	./.
chr1	145598337	.	A	.	.	LowGQX	END=145598371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145598527	.	C	.	.	LowGQX	END=145598590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145598591	.	T	.	.	LowGQX	END=145598626	GT	./.
chr1	145601527	.	C	.	.	LowGQX	END=145601626	GT	./.
chr1	145601746	.	A	.	.	LowGQX	END=145601854	GT	./.
chr1	145606270	.	A	.	.	LowGQX	END=145606369	GT	./.
chr1	145608086	.	T	.	.	LowGQX	END=145608295	GT	./.
chr1	145608402	.	A	.	.	LowGQX	END=145608661	GT	./.
chr1	145609188	.	A	.	.	LowGQX	END=145609356	GT	./.
chr1	145610526	.	T	.	.	LowGQX	END=145610625	GT	./.
chr1	145611238	.	A	.	.	LowGQX	END=145611343	GT	./.
chr1	145646095	.	T	.	.	LowGQX	END=145646166	GT	./.
chr1	145646167	.	A	.	.	LowGQX	END=145646194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145646246	.	A	.	.	LowGQX	END=145646275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145646276	.	C	.	.	LowGQX	.	GT	./.
chr1	145646277	.	A	.	.	LowGQX	END=145646314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145646315	.	A	.	.	LowGQX	.	GT	./.
chr1	145646316	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145646317	.	C	.	.	LowGQX	END=145646345	GT	./.
chr1	145647968	.	G	.	.	LowGQX	END=145647985	GT	./.
chr1	145647986	.	A	.	.	LowGQX	END=145648067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145650462	.	A	.	.	LowGQX	END=145650561	GT	./.
chr1	145663157	.	A	.	.	LowGQX	END=145663369	GT	./.
chr1	145682009	.	T	.	.	LowGQX	END=145682108	GT	./.
chr1	145683562	.	A	.	.	LowGQX	END=145683661	GT	./.
chr1	145684582	.	T	.	.	LowGQX	END=145684681	GT	./.
chr1	145686974	.	A	.	.	LowGQX	END=145687093	GT	./.
chr1	145688087	.	A	.	.	LowGQX	END=145688146	GT	./.
chr1	145688147	.	G	.	.	LowGQX	END=145688155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145688156	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:33,0,30:60:5:0.500
chr1	145688157	.	T	.	.	LowGQX	END=145688222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145696547	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145696548	.	C	.	.	LowGQX	.	GT	./.
chr1	145696549	.	T	.	.	LowGQX	END=145696589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145696590	.	G	.	.	LowGQX	.	GT	./.
chr1	145696591	.	G	.	.	LowGQX	END=145696631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145696632	.	T	.	.	LowGQX	.	GT	./.
chr1	145696633	.	A	.	.	LowGQX	END=145696643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145696644	.	G	.	.	LowGQX	.	GT	./.
chr1	145696645	.	C	.	.	LowGQX	END=145696646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145698785	.	A	.	.	LowGQX	END=145698899	GT	./.
chr1	145698900	.	A	.	.	LowGQX	END=145699083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145699084	.	C	.	.	LowGQX	END=145699092	GT	./.
chr1	145704015	.	A	.	.	LowGQX	END=145704074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704075	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	145704076	.	G	.	.	LowGQX	END=145704124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704125	.	T	.	.	LowGQX	END=145704135	GT	./.
chr1	145704136	.	T	.	.	LowGQX	END=145704138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704139	.	G	.	.	LowGQX	.	GT	./.
chr1	145704140	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704141	.	T	.	.	LowGQX	.	GT	./.
chr1	145704142	.	G	.	.	LowGQX	END=145704151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704152	.	C	.	.	LowGQX	.	GT	./.
chr1	145704153	.	A	.	.	LowGQX	END=145704163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704164	.	T	.	.	LowGQX	.	GT	./.
chr1	145704165	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704166	.	C	.	.	LowGQX	END=145704167	GT	./.
chr1	145704168	.	A	.	.	LowGQX	END=145704172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704173	.	C	.	.	LowGQX	END=145704174	GT	./.
chr1	145704175	.	C	.	.	LowGQX	END=145704176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704177	.	T	.	.	LowGQX	END=145704179	GT	./.
chr1	145704180	.	A	.	.	LowGQX	END=145704183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704184	.	C	.	.	LowGQX	.	GT	./.
chr1	145704185	.	T	.	.	LowGQX	END=145704194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704195	.	T	.	.	LowGQX	.	GT	./.
chr1	145704196	.	A	.	.	LowGQX	END=145704202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704203	.	T	.	.	LowGQX	END=145704204	GT	./.
chr1	145704205	.	T	.	.	LowGQX	END=145704211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704212	.	A	.	.	LowGQX	.	GT	./.
chr1	145704213	.	A	.	.	LowGQX	END=145704220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704221	.	C	.	.	LowGQX	END=145704222	GT	./.
chr1	145704223	.	G	.	.	LowGQX	END=145704250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704251	.	A	.	.	LowGQX	.	GT	./.
chr1	145704252	.	C	.	.	LowGQX	END=145704255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704256	.	T	.	.	LowGQX	.	GT	./.
chr1	145704257	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704258	.	A	.	.	LowGQX	.	GT	./.
chr1	145704259	.	G	.	.	LowGQX	END=145704260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704261	.	C	.	.	LowGQX	.	GT	./.
chr1	145704262	.	T	.	.	LowGQX	END=145704278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704279	.	T	.	.	LowGQX	.	GT	./.
chr1	145704280	.	A	.	.	LowGQX	END=145704281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704282	.	A	.	.	LowGQX	END=145704283	GT	./.
chr1	145704284	.	T	.	.	LowGQX	END=145704286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145704287	.	A	.	.	LowGQX	END=145704345	GT	./.
chr1	145706673	.	G	.	.	LowGQX	.	GT	./.
chr1	145706674	.	G	.	.	LowGQX	END=145706676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145706677	.	T	.	.	LowGQX	END=145706678	GT	./.
chr1	145706679	.	T	.	.	LowGQX	END=145706680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145706681	.	C	.	.	LowGQX	.	GT	./.
chr1	145706682	.	T	.	.	LowGQX	END=145706684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145706685	.	C	.	.	LowGQX	.	GT	./.
chr1	145706686	.	C	.	.	LowGQX	END=145706687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145706688	.	C	.	.	LowGQX	.	GT	./.
chr1	145706689	.	C	.	.	LowGQX	END=145706695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145706696	.	G	.	.	LowGQX	.	GT	./.
chr1	145706697	.	A	.	.	LowGQX	END=145706698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145706699	.	G	.	.	LowGQX	.	GT	./.
chr1	145706700	.	T	.	.	LowGQX	END=145706701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145706702	.	C	.	.	LowGQX	.	GT	./.
chr1	145706703	.	A	.	.	LowGQX	END=145706710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145706711	.	C	.	.	LowGQX	.	GT	./.
chr1	145706712	.	A	.	.	LowGQX	END=145706714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145706715	.	A	.	.	LowGQX	END=145706716	GT	./.
chr1	145706717	.	G	.	.	LowGQX	END=145706721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145706722	.	C	.	.	LowGQX	END=145706723	GT	./.
chr1	145706724	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145706725	.	G	.	.	LowGQX	.	GT	./.
chr1	145706726	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145706727	.	G	.	.	LowGQX	END=145706738	GT	./.
chr1	145706739	.	C	.	.	LowGQX	END=145706772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	145746981	.	G	.	.	LowGQX	END=145747300	GT	./.
chr1	145748336	.	A	.	.	LowGQX	END=145748391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	145748392	.	G	.	.	LowGQX	END=145748589	GT	./.
chr1	145752395	.	C	.	.	LowGQX	END=145752428	GT	./.
chr1	145752429	.	T	.	.	LowGQX	END=145752434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752435	.	G	.	.	LowGQX	.	GT	./.
chr1	145752436	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752437	.	G	.	.	LowGQX	.	GT	./.
chr1	145752438	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752439	.	G	.	.	LowGQX	END=145752440	GT	./.
chr1	145752441	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752442	.	T	.	.	LowGQX	.	GT	./.
chr1	145752443	.	A	.	.	LowGQX	END=145752444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752445	.	A	.	.	LowGQX	.	GT	./.
chr1	145752446	.	T	.	.	LowGQX	END=145752452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752453	.	T	.	.	LowGQX	.	GT	./.
chr1	145752454	.	A	.	.	LowGQX	END=145752458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752459	.	A	.	.	LowGQX	.	GT	./.
chr1	145752460	.	C	.	.	LowGQX	END=145752464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752465	.	A	.	.	LowGQX	.	GT	./.
chr1	145752466	.	G	.	.	LowGQX	END=145752475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752476	.	T	.	.	LowGQX	.	GT	./.
chr1	145752477	.	G	.	.	LowGQX	END=145752479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752480	.	A	.	.	LowGQX	END=145752481	GT	./.
chr1	145752482	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752483	.	T	.	.	LowGQX	.	GT	./.
chr1	145752484	.	G	.	.	LowGQX	END=145752487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752488	.	T	.	.	LowGQX	.	GT	./.
chr1	145752489	.	T	.	.	LowGQX	END=145752491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752492	.	G	.	.	LowGQX	.	GT	./.
chr1	145752493	.	G	.	.	LowGQX	END=145752494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752495	.	T	.	.	LowGQX	.	GT	./.
chr1	145752496	.	G	.	.	LowGQX	END=145752497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752498	.	T	.	.	LowGQX	.	GT	./.
chr1	145752499	.	G	.	.	LowGQX	END=145752502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752503	.	A	.	.	LowGQX	.	GT	./.
chr1	145752504	.	C	.	.	LowGQX	END=145752506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752507	.	G	.	.	LowGQX	.	GT	./.
chr1	145752508	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752509	.	T	.	.	LowGQX	.	GT	./.
chr1	145752510	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752511	.	G	.	.	LowGQX	.	GT	./.
chr1	145752512	.	A	.	.	LowGQX	END=145752521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752522	.	A	.	.	LowGQX	END=145752523	GT	./.
chr1	145752524	.	A	.	.	LowGQX	END=145752530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752531	.	A	.	.	LowGQX	.	GT	./.
chr1	145752532	.	G	.	.	LowGQX	END=145752533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752534	.	G	.	.	LowGQX	END=145752535	GT	./.
chr1	145752536	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752537	.	T	.	.	LowGQX	.	GT	./.
chr1	145752538	.	G	.	.	LowGQX	END=145752548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752549	.	G	.	.	LowGQX	.	GT	./.
chr1	145752550	.	G	.	.	LowGQX	END=145752555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145752556	.	G	.	.	LowGQX	END=145752557	GT	./.
chr1	145752558	.	T	.	.	LowGQX	END=145752566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	145753952	.	C	.	.	LowGQX	END=145753976	GT	./.
chr1	145753977	.	T	.	.	LowGQX;LowMQ	END=145754152	GT	./.
chr1	145756404	.	T	.	.	LowGQX	END=145756623	GT	./.
chr1	145761105	.	A	.	.	LowGQX	END=145761128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	145761129	.	A	.	.	LowGQX	END=145761427	GT	./.
chr1	145761428	.	C	.	.	LowGQX;LowMQ	END=145761464	GT	./.
chr1	145762026	.	C	.	.	LowGQX	END=145762335	GT	./.
chr1	145763547	.	A	.	.	LowGQX	END=145763646	GT	./.
chr1	145765017	.	G	.	.	LowGQX	END=145765073	GT	./.
chr1	145765074	.	A	.	.	LowGQX;LowMQ	END=145765269	GT	./.
chr1	145765270	.	G	.	.	LowGQX	END=145765436	GT	./.
chr1	145769403	.	C	.	.	LowGQX	END=145769554	GT	./.
chr1	145771633	.	A	.	.	LowGQX	END=145771732	GT	./.
chr1	145787709	.	T	.	.	LowGQX	END=145787714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:42
chr1	145787715	.	C	.	.	LowGQX	.	GT	./.
chr1	145787716	.	C	.	.	LowGQX;LowMQ	END=145787841	GT	./.
chr1	145787842	.	G	.	.	LowGQX	END=145787868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:30
chr1	145788762	.	T	.	.	LowGQX	END=145788861	GT	./.
chr1	145791010	.	G	.	.	LowGQX;LowMQ	END=145791172	GT	./.
chr1	145803245	.	C	.	.	LowGQX	END=145803398	GT	./.
chr1	145804202	.	A	.	.	LowGQX	END=145804367	GT	./.
chr1	145811270	.	A	.	.	LowGQX	END=145811508	GT	./.
chr1	145811894	.	A	.	.	LowGQX	END=145812004	GT	./.
chr1	145816584	.	T	.	.	LowGQX	END=145816718	GT	./.
chr1	145816719	.	C	.	.	LowGQX;LowMQ	END=145816742	GT	./.
chr1	145818747	.	A	.	.	LowGQX	END=145818846	GT	./.
chr1	145826552	.	C	.	.	LowGQX	END=145826692	GT	./.
chr1	145826693	.	G	.	.	LowGQX	END=145826715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145826859	.	G	.	.	LowGQX	END=145826864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145826865	.	C	.	.	LowGQX	.	GT	./.
chr1	145826866	.	G	.	.	LowGQX	END=145826879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145826880	.	T	.	.	LowGQX	.	GT	./.
chr1	145826881	.	G	.	.	LowGQX	END=145826919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145826920	.	G	.	.	LowGQX	.	GT	./.
chr1	145826921	.	G	.	.	LowGQX	END=145826932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	145826933	.	G	.	.	LowGQX	END=145826958	GT	./.
chr1	145883826	.	G	.	.	LowGQX	END=145883975	GT	./.
chr1	145883976	.	A	.	.	LowGQX;LowMQ	END=145883998	GT	./.
chr1	145884793	.	C	.	.	LowGQX	END=145884944	GT	./.
chr1	145897084	.	G	.	.	LowGQX	END=145897242	GT	./.
chr1	145898780	.	A	.	.	LowGQX	END=145898939	GT	./.
chr1	145899344	.	T	.	.	LowGQX	END=145899499	GT	./.
chr1	145900336	.	C	.	.	LowGQX	END=145900493	GT	./.
chr1	145916663	.	C	.	.	LowGQX	END=145916822	GT	./.
chr1	145918896	.	C	.	.	LowGQX;LowMQ	END=145918919	GT	./.
chr1	145918920	.	A	.	.	LowGQX	END=145919052	GT	./.
chr1	145922951	.	G	.	.	LowGQX	END=145923110	GT	./.
chr1	145923236	.	G	.	.	LowGQX	END=145923257	GT	./.
chr1	145923258	.	G	.	.	LowGQX;LowMQ	END=145923407	GT	./.
chr1	145923408	.	C	.	.	LowGQX	END=145923436	GT	./.
chr1	145923437	.	A	.	.	LowGQX;LowMQ	END=145923504	GT	./.
chr1	145924744	.	C	.	.	LowGQX	END=145924864	GT	./.
chr1	145924865	.	A	.	.	LowGQX;LowMQ	END=145924903	GT	./.
chr1	145926111	.	C	.	.	LowGQX	END=145926420	GT	./.
chr1	145926978	.	T	.	.	LowGQX;LowMQ	END=145927147	GT	./.
chr1	145927148	.	T	.	.	LowGQX	END=145927337	GT	./.
chr1	145931833	.	G	.	.	LowGQX	END=145932040	GT	./.
chr1	145934312	.	C	.	.	LowGQX	END=145934500	GT	./.
chr1	146034153	.	A	.	.	LowGQX	END=146034162	GT	./.
chr1	146034163	.	G	.	.	LowGQX;LowMQ	END=146034313	GT	./.
chr1	146034314	.	G	.	.	LowGQX	END=146034422	GT	./.
chr1	146035037	.	A	.	.	LowGQX;LowMQ	END=146035195	GT	./.
chr1	146035849	.	G	.	.	LowGQX;LowMQ	END=146036032	GT	./.
chr1	146036605	.	A	.	.	LowGQX	END=146036764	GT	./.
chr1	146037437	.	G	.	.	LowGQX;LowMQ	END=146037624	GT	./.
chr1	146038135	.	A	.	.	LowGQX;LowMQ	END=146038294	GT	./.
chr1	146038988	.	A	.	.	LowGQX	END=146039084	GT	./.
chr1	146039085	.	G	.	.	LowGQX;LowMQ	END=146039162	GT	./.
chr1	146039163	.	C	.	.	LowGQX	END=146039186	GT	./.
chr1	146039712	.	A	.	.	LowGQX	END=146039744	GT	./.
chr1	146039745	.	C	.	.	LowGQX;LowMQ	END=146039871	GT	./.
chr1	146040867	.	C	.	.	LowGQX;LowMQ	END=146041055	GT	./.
chr1	146044865	.	T	.	.	LowGQX;LowMQ	END=146045024	GT	./.
chr1	146046217	.	A	.	.	LowGQX;LowMQ	END=146046230	GT	./.
chr1	146046231	.	C	.	.	LowGQX	END=146046252	GT	./.
chr1	146046253	.	A	.	.	LowGQX;LowMQ	END=146046520	GT	./.
chr1	146046521	.	G	.	.	LowGQX	END=146046566	GT	./.
chr1	146046887	.	C	.	.	LowGQX;LowMQ	END=146047046	GT	./.
chr1	146047996	.	T	.	.	LowGQX;LowMQ	END=146048345	GT	./.
chr1	146049115	.	A	.	.	LowGQX;LowMQ	END=146049273	GT	./.
chr1	146050925	.	G	.	.	LowGQX;LowMQ	END=146050956	GT	./.
chr1	146050957	.	T	.	.	LowGQX	END=146050993	GT	./.
chr1	146050994	.	T	.	.	LowGQX;LowMQ	END=146051202	GT	./.
chr1	146051203	.	A	.	.	LowGQX	END=146051274	GT	./.
chr1	146052479	.	A	.	.	LowGQX;LowMQ	END=146052828	GT	./.
chr1	146053153	.	C	.	.	LowGQX	END=146053178	GT	./.
chr1	146053179	.	T	.	.	LowGQX;LowMQ	END=146053312	GT	./.
chr1	146054226	.	T	.	.	LowGQX;LowMQ	END=146054575	GT	./.
chr1	146055293	.	T	.	.	LowGQX;LowMQ	END=146055306	GT	./.
chr1	146055307	.	C	.	.	LowGQX;LowMQ	END=146055314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:3:10
chr1	146055315	.	T	.	3.20	LowGQX;LowMQ	DP=6;MQ=11;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:0:6:0:11:0
chr1	146055316	.	G	.	.	LowGQX;LowMQ	END=146055320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:11
chr1	146055321	.	T	.	3.20	LowGQX;LowMQ	DP=6;MQ=11;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:0:6:0:11:0
chr1	146055322	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:7:6:14
chr1	146055323	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:9:26
chr1	146055324	.	C	.	.	LowGQX	END=146055326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:15:26
chr1	146055327	.	C	.	.	LowGQX	END=146055328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:21:26
chr1	146055329	.	T	.	22.42	LowGQX	DP=16;MQ=26;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:8:16:0.70:26:1
chr1	146055330	.	A	.	.	LowGQX	END=146055334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:24:25
chr1	146055335	.	G	.	.	PASS	END=146055339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:30:26
chr1	146055340	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:27:26
chr1	146055341	.	T	.	.	PASS	END=146055348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:30:26
chr1	146055349	.	G	A	239.28	PASS	BaseQRankSum=-0.634;DP=23;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=26;MQ0=3;MQRankSum=1.506;QD=10.40;ReadPosRankSum=-0.713;SB=-63.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:9,13:23:60.52:269,0,61:26:61:0.591
chr1	146055350	.	C	.	.	PASS	END=146055359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:33:26
chr1	146055360	.	T	.	.	PASS	END=146055367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:48:26
chr1	146055368	.	C	.	.	PASS	END=146055386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:51:24
chr1	146055387	.	T	.	.	PASS	END=146055441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:48:22
chr1	146055442	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:52:3:22
chr1	146055443	.	A	.	.	PASS	END=146055447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:48:22
chr1	146057202	.	A	.	.	LowGQX	END=146057203	GT	./.
chr1	146057204	.	T	.	.	LowGQX	END=146057206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146057207	.	T	.	.	LowGQX	.	GT	./.
chr1	146057208	.	T	.	.	LowGQX	END=146057209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146057210	.	T	.	.	LowGQX	.	GT	./.
chr1	146057211	.	G	.	.	LowGQX	END=146057214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146057215	.	G	.	.	LowGQX	.	GT	./.
chr1	146057216	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146057217	.	G	.	.	LowGQX	.	GT	./.
chr1	146057218	.	A	.	.	LowGQX	END=146057221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146057222	.	C	.	.	LowGQX	.	GT	./.
chr1	146057223	.	A	.	.	LowGQX	END=146057225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146057226	.	T	.	.	LowGQX	.	GT	./.
chr1	146057227	.	A	.	.	LowGQX	END=146057228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146057229	.	T	.	.	LowGQX	.	GT	./.
chr1	146057230	.	G	.	.	LowGQX	END=146057238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146057239	.	T	.	.	LowGQX	END=146057240	GT	./.
chr1	146057241	.	A	.	.	LowGQX	END=146057243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146057244	.	A	.	.	LowGQX	.	GT	./.
chr1	146057245	.	C	.	.	LowGQX	END=146057247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146057248	.	T	.	.	LowGQX	.	GT	./.
chr1	146057249	.	C	.	.	LowGQX	END=146057250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146057251	.	T	.	.	LowGQX	.	GT	./.
chr1	146057252	.	G	.	.	LowGQX	END=146057254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146057255	.	G	.	.	LowGQX	.	GT	./.
chr1	146057256	.	G	.	.	LowGQX	END=146057258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146057259	.	A	.	.	LowGQX	.	GT	./.
chr1	146057260	.	G	.	.	LowGQX;LowMQ	END=146057268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:19
chr1	146057269	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057270	.	C	.	.	LowGQX;LowMQ	END=146057273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:19
chr1	146057274	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057275	.	T	.	.	LowGQX;LowMQ	END=146057278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:19
chr1	146057279	.	T	.	.	LowGQX;LowMQ	END=146057280	GT	./.
chr1	146057281	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:2:3:19
chr1	146057282	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057283	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:2:3:19
chr1	146057284	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057285	.	C	.	.	LowGQX;LowMQ	END=146057292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:19
chr1	146057293	.	T	.	.	LowGQX;LowMQ	END=146057295	GT	./.
chr1	146057296	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:2:3:19
chr1	146057297	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057298	.	A	.	.	LowGQX;LowMQ	END=146057299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:19
chr1	146057300	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057301	.	A	.	.	LowGQX;LowMQ	END=146057302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:19
chr1	146057303	.	G	.	.	LowGQX;LowMQ	END=146057439	GT	./.
chr1	146057440	.	A	.	.	LowGQX;LowMQ	END=146057442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:11
chr1	146057443	.	C	.	.	LowGQX;LowMQ	END=146057444	GT	./.
chr1	146057445	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:6:3:11
chr1	146057446	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057447	.	C	.	.	LowGQX;LowMQ	END=146057449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:11
chr1	146057450	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057451	.	C	.	.	LowGQX;LowMQ	END=146057452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:11
chr1	146057453	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057454	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:6:3:11
chr1	146057455	.	C	.	.	LowGQX;LowMQ	END=146057456	GT	./.
chr1	146057457	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:6:3:11
chr1	146057458	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057459	.	T	.	.	LowGQX;LowMQ	END=146057462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:11
chr1	146057463	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057464	.	C	.	.	LowGQX;LowMQ	END=146057465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:11
chr1	146057466	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057467	.	A	.	.	LowGQX;LowMQ	END=146057473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:12
chr1	146057474	.	G	.	32.98	LowGQX;LowMQ	DP=5;MQ=12;MQ0=4	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3:12:3
chr1	146057475	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:5:3:12
chr1	146057476	.	A	.	33	LowGQX;LowMQ	DP=5;MQ=12;MQ0=4	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:12:3
chr1	146057477	.	G	.	.	LowGQX;LowMQ	END=146057479	GT	./.
chr1	146057480	.	A	.	.	LowGQX;LowMQ	END=146057483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:12
chr1	146057484	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057485	.	C	.	.	LowGQX;LowMQ	END=146057488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:12
chr1	146057489	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057490	.	G	.	.	LowGQX;LowMQ	END=146057499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:12
chr1	146057500	.	C	.	.	LowGQX;LowMQ	END=146057501	GT	./.
chr1	146057502	.	A	.	.	LowGQX;LowMQ	END=146057504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:12
chr1	146057505	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057506	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:5:3:12
chr1	146057507	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057508	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:5:3:12
chr1	146057509	.	T	.	.	LowGQX;LowMQ	END=146057510	GT	./.
chr1	146057511	.	A	.	.	LowGQX;LowMQ	END=146057513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:12
chr1	146057514	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057515	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:4:3:14
chr1	146057516	.	T	.	.	LowGQX;LowMQ	END=146057517	GT	./.
chr1	146057518	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:4:3:14
chr1	146057519	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057520	.	A	.	.	LowGQX;LowMQ	END=146057521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:14
chr1	146057522	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057523	.	C	.	.	LowGQX;LowMQ	END=146057536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:14
chr1	146057537	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057538	.	A	.	.	LowGQX;LowMQ	END=146057546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:14
chr1	146057547	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146057548	.	A	.	.	LowGQX	END=146057549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146057550	.	G	.	.	LowGQX	END=146057551	GT	./.
chr1	146066114	.	C	.	.	LowGQX	END=146066282	GT	./.
chr1	146076825	.	G	.	.	LowGQX	END=146077223	GT	./.
chr1	146077224	.	C	.	.	LowGQX;LowMQ	END=146077374	GT	./.
chr1	146079591	.	C	.	.	LowGQX;LowMQ	END=146079632	GT	./.
chr1	146079633	.	T	.	.	LowGQX	END=146079719	GT	./.
chr1	146079720	.	C	.	.	LowGQX;LowMQ	END=146079880	GT	./.
chr1	146079881	.	C	.	.	LowGQX	END=146079934	GT	./.
chr1	146079935	.	A	.	.	LowGQX;LowMQ	END=146080020	GT	./.
chr1	146215063	.	A	.	.	LowGQX	END=146215072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:24
chr1	146215073	.	G	.	.	LowGQX	END=146215077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:36
chr1	146215078	.	T	G	9.10	LowGQX	BaseQRankSum=1.026;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=36;MQ0=0;MQRankSum=-1.026;QD=2.28;ReadPosRankSum=1.026;SB=-22.64	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:38.53:39,0,39:36:9:0.500
chr1	146215079	.	T	.	.	LowGQX	END=146215110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:36
chr1	146215111	.	G	A	58.07	LowGQ;LowGQX	DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=36;MQ0=0;QD=14.52;SB=-67.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,4:4:6.02:89,6,0:36:6:1.000
chr1	146215112	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:36
chr1	146215113	.	G	A	58.07	LowGQ;LowGQX	DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=36;MQ0=0;QD=14.52;SB=-60.20	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,4:4:6.02:89,6,0:36:6:1.000
chr1	146215114	.	G	.	.	LowGQX	END=146215137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:36
chr1	146215138	.	A	G	42.17	LowGQ;LowGQX	DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=39;MQ0=0;QD=14.06;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:6.01:73,6,0:39:6:1.000
chr1	146215139	.	A	.	.	LowGQX	END=146215207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:39
chr1	146215208	.	T	.	.	LowGQX	END=146215216	GT	./.
chr1	146215217	.	G	.	.	LowGQX	END=146215222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146215223	.	G	.	2.30	LowGQX	DP=1;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:27:0
chr1	146215224	.	G	.	.	LowGQX	END=146215231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146215232	.	A	.	2.30	LowGQX	DP=1;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:27:0
chr1	146215233	.	A	.	.	LowGQX	END=146215252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146215253	.	T	.	.	LowGQX	.	GT	./.
chr1	146215254	.	A	.	.	LowGQX	END=146215255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146215256	.	C	.	.	LowGQX	.	GT	./.
chr1	146215257	.	A	.	.	LowGQX	END=146215275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146215276	.	C	.	2.30	LowGQX	DP=1;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:27:0
chr1	146215277	.	A	.	.	LowGQX	END=146215280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146215281	.	C	.	.	LowGQX	.	GT	./.
chr1	146215282	.	T	.	.	LowGQX	END=146215285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146215286	.	G	.	.	LowGQX	END=146215287	GT	./.
chr1	146215288	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146215289	.	T	.	.	LowGQX	.	GT	./.
chr1	146215290	.	C	.	.	LowGQX	END=146215300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146215301	.	A	.	.	LowGQX	.	GT	./.
chr1	146215302	.	T	.	.	LowGQX	END=146215305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146215306	.	C	.	.	LowGQX	.	GT	./.
chr1	146215307	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146215308	.	C	.	.	LowGQX	.	GT	./.
chr1	146215309	.	G	.	.	LowGQX	END=146215315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146215316	.	A	.	.	LowGQX	.	GT	./.
chr1	146215317	.	G	.	.	LowGQX	END=146215333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146215334	.	A	.	.	LowGQX	.	GT	./.
chr1	146215335	.	A	.	.	LowGQX	END=146215342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146215891	.	T	.	.	LowGQX;LowMQ	END=146215892	GT	./.
chr1	146215893	.	G	.	.	LowGQX;LowMQ	END=146215895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:3:6
chr1	146215896	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146215897	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:10:3:6
chr1	146215898	.	C	.	.	LowGQX;LowMQ	END=146215899	GT	./.
chr1	146215900	.	G	.	.	LowGQX;LowMQ	END=146215906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:3:5
chr1	146215907	.	A	.	.	LowGQX;LowMQ	END=146215909	GT	./.
chr1	146215910	.	C	.	.	LowGQX;LowMQ	END=146215913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:3:5
chr1	146215914	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146215915	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:17:3:5
chr1	146215916	.	T	.	.	LowGQX;LowMQ	END=146215917	GT	./.
chr1	146215918	.	A	.	.	LowGQX;LowMQ	END=146215921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:3:5
chr1	146215922	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146215923	.	C	.	.	LowGQX;LowMQ	END=146215929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:3:5
chr1	146215930	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146215931	.	G	.	.	LowGQX;LowMQ	END=146215935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:3:4
chr1	146215936	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146215937	.	A	.	.	LowGQX;LowMQ	END=146215940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:3:4
chr1	146215941	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146215942	.	C	.	.	LowGQX;LowMQ	END=146215946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:3:4
chr1	146215947	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146215948	.	G	.	.	LowGQX;LowMQ	END=146215953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:3:4
chr1	146215954	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146215955	.	G	.	.	LowGQX;LowMQ	END=146215957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:3:4
chr1	146215958	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146215959	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:26:3:4
chr1	146215960	.	T	.	.	LowGQX;LowMQ	END=146215961	GT	./.
chr1	146215962	.	G	.	.	LowGQX;LowMQ	END=146215963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:3:4
chr1	146215964	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146215965	.	C	.	.	LowGQX;LowMQ	END=146215969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:3:4
chr1	146215970	.	T	.	.	LowGQX;LowMQ	END=146215971	GT	./.
chr1	146215972	.	C	.	.	LowGQX;LowMQ	END=146215973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:3:4
chr1	146215974	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146215975	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:24:3:4
chr1	146215976	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146215977	.	C	.	.	LowGQX;LowMQ	END=146215983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:3:4
chr1	146215984	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146215985	.	C	.	.	LowGQX;LowMQ	END=146215996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:3:4
chr1	146215997	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146215998	.	T	.	.	LowGQX;LowMQ	END=146216000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:3:4
chr1	146216001	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146216002	.	C	.	.	LowGQX;LowMQ	END=146216007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:3:4
chr1	146216008	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146216009	.	C	.	.	LowGQX;LowMQ	END=146216019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:3:4
chr1	146216020	.	T	.	.	LowGQX;LowMQ	END=146216051	GT	./.
chr1	146216755	.	A	.	.	LowGQX	END=146216779	GT	./.
chr1	146216780	.	G	.	.	LowGQX;LowMQ	END=146216965	GT	./.
chr1	146217514	.	A	.	.	LowGQX;LowMQ	END=146217620	GT	./.
chr1	146217621	.	T	.	.	LowGQX	END=146217673	GT	./.
chr1	146218359	.	T	.	.	LowGQX	END=146218522	GT	./.
chr1	146218523	.	C	.	.	LowGQX;LowMQ	END=146218557	GT	./.
chr1	146219043	.	A	.	.	LowGQX	END=146219202	GT	./.
chr1	146219898	.	C	.	.	LowGQX	END=146220069	GT	./.
chr1	146220070	.	C	.	.	LowGQX;LowMQ	END=146220096	GT	./.
chr1	146220583	.	A	.	.	LowGQX	.	GT	./.
chr1	146220584	.	A	.	.	LowGQX;LowMQ	END=146220742	GT	./.
chr1	146221438	.	C	.	.	LowGQX	END=146221636	GT	./.
chr1	146222185	.	T	.	.	LowGQX;LowMQ	END=146222266	GT	./.
chr1	146222267	.	C	.	.	LowGQX	END=146222286	GT	./.
chr1	146222287	.	C	.	.	LowGQX;LowMQ	END=146222344	GT	./.
chr1	146223048	.	A	.	.	LowGQX;LowMQ	END=146223231	GT	./.
chr1	146223818	.	A	.	.	LowGQX	END=146223977	GT	./.
chr1	146224663	.	T	.	.	LowGQX	END=146224717	GT	./.
chr1	146224718	.	G	.	.	LowGQX;LowMQ	END=146224832	GT	./.
chr1	146224833	.	A	.	.	LowGQX	END=146224861	GT	./.
chr1	146225348	.	A	.	.	LowGQX;LowMQ	END=146225392	GT	./.
chr1	146225393	.	T	.	.	LowGQX	END=146225445	GT	./.
chr1	146225446	.	G	.	.	LowGQX;LowMQ	END=146225507	GT	./.
chr1	146226203	.	C	.	.	LowGQX	END=146226401	GT	./.
chr1	146226888	.	A	.	.	LowGQX	END=146226898	GT	./.
chr1	146226899	.	C	.	.	LowGQX;LowMQ	END=146227047	GT	./.
chr1	146227743	.	C	.	.	LowGQX;LowMQ	END=146227751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:11
chr1	146227752	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146227753	.	A	.	.	LowGQX;LowMQ	END=146227760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:11
chr1	146227761	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146227762	.	G	.	.	LowGQX;LowMQ	END=146227764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:11
chr1	146227765	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146227766	.	A	.	.	LowGQX;LowMQ	END=146227770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:11
chr1	146227771	.	C	.	.	LowGQX;LowMQ	END=146227826	GT	./.
chr1	146227827	.	C	.	.	LowGQX;LowMQ	END=146227836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:11
chr1	146227837	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146227838	.	G	.	.	LowGQX;LowMQ	END=146227840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:11
chr1	146227841	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146227842	.	G	.	.	LowGQX;LowMQ	END=146227867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:13
chr1	146227868	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146227869	.	C	.	.	LowGQX;LowMQ	END=146227885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:13
chr1	146227886	.	T	.	.	LowGQX;LowMQ	END=146227893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:19
chr1	146227894	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146227895	.	G	.	.	LowGQX;LowMQ	END=146227919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:19
chr1	146227920	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146227921	.	A	.	.	LowGQX;LowMQ	END=146227932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:19
chr1	146227933	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146227934	.	G	.	.	LowGQX;LowMQ	END=146227941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:19
chr1	146228478	.	T	.	.	LowGQX;LowMQ	END=146228637	GT	./.
chr1	146229341	.	A	.	.	LowGQX;LowMQ	END=146229512	GT	./.
chr1	146229513	.	T	.	.	LowGQX;LowMQ	END=146229517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:19
chr1	146229518	.	G	.	.	LowGQX	END=146229519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:21
chr1	146229520	.	T	.	.	LowGQX	.	GT	./.
chr1	146229521	.	G	.	.	LowGQX	END=146229524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:21
chr1	146230109	.	A	.	.	LowGQX;LowMQ	END=146230171	GT	./.
chr1	146230172	.	T	.	.	LowGQX	END=146230268	GT	./.
chr1	146230954	.	T	.	.	LowGQX;LowMQ	END=146230961	GT	./.
chr1	146230962	.	T	.	.	LowGQX	END=146231009	GT	./.
chr1	146231010	.	C	.	.	LowGQX;LowMQ	END=146231152	GT	./.
chr1	146231639	.	A	.	.	LowGQX;LowMQ	END=146231673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:3:12
chr1	146231674	.	T	.	.	LowGQX;LowMQ	END=146231691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:3:11
chr1	146231692	.	G	.	.	LowGQX;LowMQ	END=146231725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:3:10
chr1	146231726	.	G	.	.	LowGQX;LowMQ	END=146231759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:3:9
chr1	146231760	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146231761	.	G	.	.	LowGQX;LowMQ	END=146231792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:3:7
chr1	146231793	.	T	.	.	LowGQX;LowMQ	END=146231798	GT	./.
chr1	146232483	.	A	.	.	LowGQX	END=146232675	GT	./.
chr1	146233206	.	A	.	.	LowGQX	END=146233220	GT	./.
chr1	146233221	.	T	.	.	LowGQX;LowMQ	END=146233365	GT	./.
chr1	146234353	.	A	.	.	LowGQX;LowMQ	END=146234547	GT	./.
chr1	146238379	.	T	.	.	LowGQX;LowMQ	END=146238461	GT	./.
chr1	146238462	.	C	.	.	LowGQX;LowMQ	END=146238464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:3:3
chr1	146238465	.	G	.	.	LowGQX;LowMQ	END=146238467	GT	./.
chr1	146238468	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:76:3:2
chr1	146238469	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146238470	.	A	.	.	LowGQX;LowMQ	END=146238471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:3:2
chr1	146238472	.	A	.	.	LowGQX;LowMQ	END=146238476	GT	./.
chr1	146238477	.	C	.	.	LowGQX;LowMQ	END=146238479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:3:2
chr1	146238480	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146238481	.	T	.	.	LowGQX;LowMQ	END=146238482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:0:2
chr1	146238483	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146238484	.	T	.	.	LowGQX;LowMQ	END=146238485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:3:3
chr1	146238486	.	T	.	.	LowGQX;LowMQ	END=146238487	GT	./.
chr1	146238488	.	C	.	.	LowGQX;LowMQ	END=146238489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:3:2
chr1	146238490	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146238491	.	C	.	.	LowGQX;LowMQ	END=146238494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:3:2
chr1	146238495	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146238496	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:70:3:2
chr1	146238497	.	C	.	.	LowGQX;LowMQ	END=146238498	GT	./.
chr1	146238499	.	T	.	.	LowGQX;LowMQ	END=146238500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:3:2
chr1	146238501	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146238502	.	T	.	.	LowGQX;LowMQ	END=146238503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:3:2
chr1	146238504	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146238505	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:75:3:2
chr1	146238506	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146238507	.	T	.	.	LowGQX;LowMQ	END=146238509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:3:2
chr1	146238510	.	A	.	.	LowGQX;LowMQ	END=146238511	GT	./.
chr1	146238512	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:73:3:2
chr1	146238513	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146238514	.	T	.	.	LowGQX;LowMQ	END=146238515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:3:2
chr1	146238516	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146238517	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:72:3:2
chr1	146238518	.	T	.	.	LowGQX;LowMQ	END=146238519	GT	./.
chr1	146238520	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:73:3:2
chr1	146238521	.	A	.	.	LowGQX;LowMQ	END=146238525	GT	./.
chr1	146238526	.	T	.	.	LowGQX;LowMQ	END=146238528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:3:2
chr1	146238529	.	A	.	.	LowGQX;LowMQ	END=146238531	GT	./.
chr1	146238532	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:70:3:3
chr1	146238533	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146238534	.	A	.	.	LowGQX;LowMQ	END=146238538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:3:2
chr1	146239745	.	T	.	.	LowGQX;LowMQ	END=146239775	GT	./.
chr1	146239776	.	G	.	.	LowGQX;LowMQ	END=146239800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:12
chr1	146239801	.	G	.	32.99	LowGQX;LowMQ	DP=4;MQ=12;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3:12:3
chr1	146239802	.	G	.	.	LowGQX;LowMQ	END=146239823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:9
chr1	146239824	.	A	.	.	LowGQX;LowMQ	END=146239829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:3:7
chr1	146239830	.	T	.	.	LowGQX;LowMQ	END=146239834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:3:7
chr1	146239835	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146239836	.	A	.	.	LowGQX;LowMQ	END=146239846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:3:7
chr1	146239847	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146239848	.	A	.	.	LowGQX;LowMQ	END=146239855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:3:7
chr1	146239856	.	A	.	32.99	LowGQX;LowMQ	DP=11;MQ=7;MQ0=10	GT:AD:DP:GQ:MQ:GQX	0/0:8:11:3:7:3
chr1	146239857	.	G	.	.	LowGQX;LowMQ	END=146239878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:3:6
chr1	146239879	.	T	.	.	LowGQX;LowMQ	END=146239901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:3:5
chr1	146239902	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146239903	.	A	.	.	LowGQX;LowMQ	END=146239904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:3:5
chr1	146239905	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146239906	.	T	.	.	LowGQX;LowMQ	END=146239916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:3:5
chr1	146239917	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146239918	.	T	.	.	LowGQX;LowMQ	END=146239920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:3:5
chr1	146239921	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146239922	.	G	.	.	LowGQX;LowMQ	END=146239923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:3:5
chr1	146239924	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146239925	.	G	.	.	LowGQX;LowMQ	END=146239926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:3:5
chr1	146239927	.	T	.	.	LowGQX;LowMQ	END=146240084	GT	./.
chr1	146240414	.	C	.	.	LowGQX;LowMQ	END=146240573	GT	./.
chr1	146241526	.	T	.	.	LowGQX;LowMQ	END=146241875	GT	./.
chr1	146242596	.	T	.	.	LowGQX;LowMQ	END=146242749	GT	./.
chr1	146244437	.	G	.	.	LowGQX	END=146244493	GT	./.
chr1	146244494	.	C	.	.	LowGQX	END=146244500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:23
chr1	146244501	.	A	.	.	LowGQX	.	GT	./.
chr1	146244502	.	T	.	.	LowGQX	END=146244507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:23
chr1	146244508	.	C	.	4.33	LowGQX	DP=1;MQ=23;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:23:0
chr1	146244509	.	G	.	.	LowGQX	END=146244561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:23
chr1	146244562	.	T	.	.	LowGQX;LowMQ	END=146244567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:19
chr1	146244568	.	T	.	.	LowGQX	END=146244602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:20
chr1	146244603	.	T	.	36.01	LowGQX	DP=5;MQ=21;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.01:21:6
chr1	146244604	.	G	.	.	LowGQX	END=146244608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:21
chr1	146244609	.	C	T	24.11	LowGQ;LowGQX;SB	DP=5;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=21;MQ0=1;QD=4.82;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,4:5:6.01:55,6,0:21:6:0.800
chr1	146244610	.	G	.	.	LowGQX	END=146244663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:20
chr1	146244664	.	G	.	.	LowGQX;LowMQ	END=146244689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:19
chr1	146244690	.	T	.	36	LowGQX;LowMQ	DP=3;MQ=19;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:19:6
chr1	146244691	.	T	.	.	LowGQX;LowMQ	END=146244712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:19
chr1	146244713	.	A	.	.	LowGQX	END=146244739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:23
chr1	146244740	.	C	.	4.33	LowGQX	DP=1;MQ=23;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:23:0
chr1	146244741	.	A	.	.	LowGQX	END=146244745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:23
chr1	146244746	.	G	.	.	LowGQX	END=146244786	GT	./.
chr1	146246000	.	T	.	.	LowGQX	END=146246004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:29
chr1	146246005	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:29
chr1	146246006	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:29
chr1	146246007	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:29
chr1	146246008	.	G	.	.	LowGQX	END=146246015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:29
chr1	146246016	.	A	.	.	LowGQX	END=146246023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:35
chr1	146246024	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:35
chr1	146246025	.	T	.	.	LowGQX	END=146246029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:34
chr1	146246030	.	A	.	.	PASS	END=146246031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:33
chr1	146246032	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:33
chr1	146246033	.	C	.	.	PASS	END=146246038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:32
chr1	146246039	.	A	.	.	PASS	END=146246049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:31
chr1	146246050	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:31
chr1	146246051	.	C	.	.	PASS	END=146246064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:31
chr1	146246065	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:31
chr1	146246066	.	G	.	.	PASS	END=146246091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:30
chr1	146246092	.	T	.	.	PASS	END=146246096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:30
chr1	146246097	.	A	.	.	PASS	END=146246098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:33:31
chr1	146246099	.	A	.	.	PASS	END=146246110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:31
chr1	146246111	.	A	.	.	PASS	END=146246115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:32
chr1	146246116	.	T	.	.	PASS	END=146246125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:32
chr1	146246126	.	C	.	.	PASS	END=146246127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:32
chr1	146246128	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:27:32
chr1	146246129	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:32
chr1	146246130	.	C	.	.	PASS	END=146246143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:30
chr1	146246144	.	C	.	.	PASS	END=146246153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:30
chr1	146246154	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:30
chr1	146246155	.	T	.	.	PASS	END=146246180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:26
chr1	146246181	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:26
chr1	146246182	.	G	.	.	LowGQX	END=146246183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:27:26
chr1	146246184	.	C	.	.	PASS	END=146246187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:26
chr1	146246188	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:18:25
chr1	146246189	.	T	.	.	LowGQX	END=146246191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:24:25
chr1	146246192	.	A	.	.	PASS	END=146246196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:24
chr1	146246197	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:24
chr1	146246198	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:24
chr1	146246199	.	A	.	.	LowGQX	END=146246200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:24
chr1	146246201	.	G	.	.	PASS	END=146246202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:24
chr1	146246203	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:24
chr1	146246204	.	C	.	.	PASS	END=146246205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:24
chr1	146246206	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:24
chr1	146246207	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:24
chr1	146246208	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:24
chr1	146246209	.	C	.	.	PASS	END=146246213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:24
chr1	146246214	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:24
chr1	146246215	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:24
chr1	146246216	.	A	.	.	LowGQX	END=146246217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:27:24
chr1	146246218	.	C	.	.	PASS	END=146246219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:24
chr1	146246220	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:24
chr1	146246221	.	G	.	.	PASS	END=146246224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:24
chr1	146246225	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:24
chr1	146246226	.	G	.	.	PASS	END=146246227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:24
chr1	146246228	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:24
chr1	146246229	.	A	.	.	PASS	END=146246242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:24
chr1	146246243	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:25
chr1	146246244	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:25
chr1	146246245	.	T	.	.	LowGQX	END=146246280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:22
chr1	146246281	.	T	.	.	LowGQX	END=146246286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:21
chr1	146246287	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:21
chr1	146246288	.	T	.	.	LowGQX	END=146246291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:20
chr1	146246292	.	C	.	.	LowGQX	END=146246294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:15:20
chr1	146246295	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:20
chr1	146246296	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:15:21
chr1	146246297	.	T	.	.	LowGQX	END=146246298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:21
chr1	146246299	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:15:21
chr1	146246300	.	G	.	.	LowGQX	END=146246308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:20
chr1	146246309	.	G	.	.	LowGQX	END=146246325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:20
chr1	146246326	.	A	.	.	LowGQX	END=146246332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:20
chr1	146246333	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:6:20
chr1	146246334	.	T	.	.	LowGQX	END=146246337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:20
chr1	146246338	.	C	.	.	LowGQX	END=146246343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:21
chr1	146246344	.	G	.	.	LowGQX	END=146246348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:23
chr1	146246349	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:23
chr1	146246676	.	A	.	.	LowGQX	END=146246729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146246730	.	T	.	.	LowGQX	.	GT	./.
chr1	146246731	.	G	.	.	LowGQX	END=146246738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146246739	.	A	.	.	LowGQX	.	GT	./.
chr1	146246740	.	G	.	.	LowGQX	END=146246773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146246774	.	T	.	.	LowGQX	END=146246792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:20
chr1	146246793	.	C	.	.	LowGQX;LowMQ	END=146246794	GT	./.
chr1	146246795	.	T	.	.	LowGQX	END=146246816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:20
chr1	146246817	.	T	.	.	LowGQX	END=146246818	GT	./.
chr1	146246819	.	T	.	.	LowGQX	END=146246832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:20
chr1	146247798	.	G	.	.	LowGQX;LowMQ	END=146248147	GT	./.
chr1	146248864	.	T	.	.	LowGQX;LowMQ	END=146249074	GT	./.
chr1	146250719	.	G	.	.	LowGQX	END=146250752	GT	./.
chr1	146250753	.	T	.	.	LowGQX;LowMQ	END=146250776	GT	./.
chr1	146250777	.	C	.	.	LowGQX	END=146250778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:20
chr1	146250779	.	G	.	33	LowGQX	DP=2;MQ=20;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:20:3
chr1	146250780	.	T	.	.	LowGQX	END=146250805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:20
chr1	146250806	.	C	.	33	LowGQX	DP=2;MQ=20;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:20:3
chr1	146250807	.	T	.	.	LowGQX	END=146250821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:20
chr1	146250822	.	G	.	.	LowGQX;LowMQ	END=146250854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:17
chr1	146250855	.	C	.	33	LowGQX;LowMQ	DP=3;MQ=17;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:3.01:17:3
chr1	146250856	.	T	.	.	LowGQX;LowMQ	END=146250903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:17
chr1	146250904	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:20
chr1	146250905	.	G	.	33	LowGQX	DP=2;MQ=20;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:20:3
chr1	146250906	.	A	.	.	LowGQX	END=146250944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:20
chr1	146250945	.	G	.	.	LowGQX	.	GT	./.
chr1	146250946	.	G	.	.	LowGQX	END=146250949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:20
chr1	146250950	.	G	.	.	LowGQX	.	GT	./.
chr1	146250951	.	G	.	.	LowGQX	END=146250970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:20
chr1	146250971	.	G	.	33	LowGQX	DP=2;MQ=20;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:20:3
chr1	146250972	.	T	.	.	LowGQX	END=146251056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146251057	.	T	.	.	LowGQX	END=146251068	GT	./.
chr1	146252292	.	A	.	.	LowGQX	END=146252301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:22
chr1	146252302	.	C	.	.	LowGQX	END=146252305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:22
chr1	146252306	.	G	.	.	LowGQX	END=146252307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:22
chr1	146252308	.	A	.	.	LowGQX	END=146252309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:22
chr1	146252310	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:6:22
chr1	146252311	.	G	.	.	LowGQX	END=146252312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:22
chr1	146252313	.	T	.	.	LowGQX	END=146252315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:20
chr1	146252316	.	T	.	.	LowGQX	END=146252322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:21
chr1	146252323	.	C	.	.	LowGQX	END=146252333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:22
chr1	146252334	.	G	.	.	PASS	END=146252338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:28
chr1	146252339	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:28
chr1	146252340	.	G	.	.	PASS	END=146252342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:28
chr1	146252343	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:30
chr1	146252344	.	C	.	.	PASS	END=146252345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:30
chr1	146252346	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:30
chr1	146252347	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:30
chr1	146252348	.	G	.	.	LowGQX	END=146252350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:30
chr1	146252351	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:30
chr1	146252352	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:30
chr1	146252353	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:30
chr1	146252354	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:21:30
chr1	146252355	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:30
chr1	146252356	.	A	.	.	LowGQX	END=146252357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:30
chr1	146252358	.	G	.	.	PASS	END=146252364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:30
chr1	146252365	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:31
chr1	146252366	.	G	.	.	PASS	END=146252378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:31
chr1	146252379	.	A	.	.	PASS	END=146252383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:33
chr1	146252384	.	C	.	.	PASS	END=146252395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:34
chr1	146252396	.	C	.	.	PASS	END=146252419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:34
chr1	146252420	.	C	.	.	PASS	END=146252463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:39:33
chr1	146252464	.	T	.	.	PASS	END=146252476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:34
chr1	146252477	.	G	.	.	PASS	END=146252479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:36:36
chr1	146252480	.	T	.	.	PASS	END=146252486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:35
chr1	146252487	.	A	.	.	PASS	END=146252491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:35
chr1	146252492	.	G	.	.	PASS	END=146252494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:32
chr1	146252495	.	C	.	.	PASS	END=146252500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:32
chr1	146252501	.	T	.	.	PASS	END=146252508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:31
chr1	146252509	.	C	.	.	PASS	END=146252524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:29
chr1	146252525	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:27:28
chr1	146252526	.	C	.	.	PASS	END=146252535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:25
chr1	146252536	.	T	.	.	PASS	END=146252550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:25
chr1	146252551	.	C	.	.	LowGQX	END=146252552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:27:25
chr1	146252553	.	C	.	.	PASS	END=146252559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:25
chr1	146252560	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:27:25
chr1	146252561	.	C	.	.	PASS	END=146252569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:24
chr1	146252570	.	C	.	.	LowGQX	END=146252573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:21
chr1	146252574	.	C	.	.	LowGQX	END=146252580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:18:22
chr1	146252581	.	A	.	.	LowGQX	END=146252586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:15:22
chr1	146252587	.	G	.	.	LowGQX	END=146252592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:12:22
chr1	146252593	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:22
chr1	146252594	.	A	.	.	LowGQX;LowMQ	END=146252598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:12:19
chr1	146252599	.	T	.	.	LowGQX;LowMQ	END=146252616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:9:17
chr1	146252617	.	A	.	.	LowGQX	END=146252623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:20
chr1	146252624	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:6:20
chr1	146252625	.	T	.	.	LowGQX	END=146252630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:20
chr1	146252631	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:6:20
chr1	146252632	.	C	.	.	LowGQX	END=146252637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:20
chr1	146252638	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:8:12:18
chr1	146252639	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:8:0:18
chr1	146252640	.	C	.	42.02	LowGQX;LowMQ	DP=8;MQ=18;MQ0=4	GT:AD:DP:GQ:MQ:GQX	0/0:6:8:12.02:18:12
chr1	146252641	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:20
chr1	146252965	.	C	.	.	LowGQX	END=146253004	GT	./.
chr1	146253005	.	A	.	.	LowGQX;LowMQ	END=146253177	GT	./.
chr1	146395341	.	C	.	.	LowGQX;LowMQ	END=146395413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:12
chr1	146395414	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146395415	.	G	.	.	LowGQX;LowMQ	END=146395422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:12
chr1	146395423	.	T	.	5.68	LowGQX;LowMQ	DP=4;MQ=15;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:0:4:0.01:15:0
chr1	146395424	.	T	.	.	LowGQX;LowMQ	END=146395462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:15
chr1	146395463	.	G	.	5.68	LowGQX;LowMQ	DP=2;MQ=15;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:0:2:0.01:15:0
chr1	146395464	.	A	.	.	LowGQX;LowMQ	END=146395470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:15
chr1	146395471	.	C	.	5.68	LowGQX;LowMQ	DP=2;MQ=15;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:0:2:0.01:15:0
chr1	146395472	.	T	.	.	LowGQX;LowMQ	END=146395516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:15
chr1	146397358	.	G	.	.	PASS	END=146397369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:59
chr1	146397370	.	T	.	.	PASS	END=146397446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:59
chr1	146397447	.	A	.	.	PASS	END=146397457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chr1	146397458	.	T	.	.	PASS	END=146397461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:60
chr1	146398292	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:30
chr1	146398293	.	G	.	.	PASS	END=146398297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:30
chr1	146398298	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:24:28
chr1	146398299	.	T	.	.	PASS	END=146398300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:30:28
chr1	146398301	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:27:28
chr1	146398302	.	A	.	.	PASS	END=146398305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:30:28
chr1	146398306	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:27:28
chr1	146398307	.	T	.	.	PASS	END=146398353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:30:28
chr1	146398354	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:27:28
chr1	146398355	.	G	.	.	PASS	END=146398386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:30:25
chr1	146398387	.	G	C	40.41	LowQD	BaseQRankSum=-0.680;DP=23;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=26;MQ0=7;MQRankSum=-1.246;QD=1.76;ReadPosRankSum=0.906;SB=-11.67	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:18,5:23:70.40:70,0,243:26:40:0.217
chr1	146398388	.	A	.	.	PASS	END=146398391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:30:26
chr1	146398392	.	T	.	.	PASS	END=146398407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:33:27
chr1	146398408	.	A	.	.	PASS	END=146398414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:30
chr1	146398415	.	A	.	.	LowGQX	END=146398417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:30
chr1	146398418	.	A	.	.	PASS	END=146398419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:30
chr1	146398420	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:30
chr1	146398421	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:30
chr1	146398422	.	G	A	4.28	LowGQX;LowQD;SB	BaseQRankSum=-0.382;DP=14;Dels=0.00;FS=9.700;HRun=0;HaplotypeScore=1.8938;MQ=30;MQ0=3;MQRankSum=-1.106;QD=0.31;ReadPosRankSum=0.978;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:11,3:14:32.25:32,0,189:30:4:0.214
chr1	146398423	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:30
chr1	146398424	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:31
chr1	146398425	.	C	A	25.87	LowGQX;LowQD;SB	BaseQRankSum=0.715;DP=13;Dels=0.00;FS=10.792;HRun=2;HaplotypeScore=1.8938;MQ=31;MQ0=2;MQRankSum=-1.106;QD=1.99;ReadPosRankSum=0.978;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:10,3:13:55.85:56,0,231:31:26:0.231
chr1	146398426	.	A	.	.	LowGQX	END=146398427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:31
chr1	146398428	.	G	.	.	PASS	END=146398430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:32
chr1	146398431	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:32
chr1	146398432	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:32
chr1	146398433	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:32
chr1	146398434	.	G	.	.	PASS	END=146398441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:32
chr1	146398442	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:36
chr1	146398443	.	C	.	.	PASS	END=146398450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:36
chr1	146398451	.	A	.	.	LowGQX	END=146398454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:38
chr1	146398455	.	G	.	.	PASS	END=146398457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:39
chr1	146398458	.	G	.	.	LowGQX	END=146398459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:39
chr1	146398460	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:39
chr1	146398461	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:39
chr1	146398462	.	G	.	.	PASS	END=146398466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:39
chr1	146398467	.	G	.	.	LowGQX	END=146398480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:39
chr1	146398481	.	A	.	.	LowGQX	END=146398488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:43
chr1	146398489	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:43
chr1	146398490	.	T	.	.	LowGQX	END=146398493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:43
chr1	146398494	.	A	.	.	LowGQX	END=146398495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:43
chr1	146398496	.	A	.	.	LowGQX	END=146398507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:43
chr1	146399541	.	T	.	.	LowGQX	END=146399542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:34
chr1	146399543	.	T	.	.	LowGQX	END=146399559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:34
chr1	146399560	.	G	.	.	LowGQX	END=146399561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:35
chr1	146399562	.	T	.	39.02	LowGQX	DP=9;MQ=35;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:9.03:35:9
chr1	146399563	.	G	.	.	LowGQX	END=146399564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:9:35
chr1	146399565	.	A	.	.	LowGQX	END=146399567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:35
chr1	146399568	.	T	.	.	LowGQX	END=146399569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:9:35
chr1	146399570	.	A	.	.	LowGQX	END=146399587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:35
chr1	146399588	.	T	.	.	LowGQX	END=146399592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:9:39
chr1	146399593	.	G	.	.	LowGQX	END=146399620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:39
chr1	146399621	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:6:39
chr1	146399622	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:39
chr1	146399623	.	C	.	.	LowGQX	END=146399627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:9:39
chr1	146399628	.	G	.	.	LowGQX	END=146399640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:39
chr1	146400019	.	A	.	.	LowGQX;LowMQ	END=146400194	GT	./.
chr1	146400195	.	A	.	.	LowGQX	END=146400236	GT	./.
chr1	146400237	.	C	.	.	LowGQX;LowMQ	END=146400368	GT	./.
chr1	146401599	.	C	.	.	LowGQX;LowMQ	END=146401679	GT	./.
chr1	146401680	.	C	.	.	LowGQX	END=146401706	GT	./.
chr1	146401707	.	T	.	.	LowGQX	END=146401729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401730	.	T	.	.	LowGQX	.	GT	./.
chr1	146401731	.	C	.	.	LowGQX	END=146401732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401733	.	A	.	.	LowGQX	.	GT	./.
chr1	146401734	.	G	.	.	LowGQX	END=146401749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401750	.	G	.	.	LowGQX	.	GT	./.
chr1	146401751	.	A	.	.	LowGQX	END=146401764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401765	.	C	.	.	LowGQX	.	GT	./.
chr1	146401766	.	A	.	.	LowGQX	END=146401777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401778	.	C	.	.	LowGQX	.	GT	./.
chr1	146401779	.	G	.	.	LowGQX	END=146401784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401785	.	A	.	.	LowGQX	.	GT	./.
chr1	146401786	.	G	.	.	LowGQX	END=146401790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401791	.	C	.	.	LowGQX	.	GT	./.
chr1	146401792	.	A	.	.	LowGQX	END=146401816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401817	.	C	.	2.30	LowGQX	DP=1;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:27:0
chr1	146401818	.	T	.	.	LowGQX	END=146401850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401851	.	G	.	.	LowGQX	.	GT	./.
chr1	146401852	.	C	.	.	LowGQX	END=146401858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401859	.	G	.	.	LowGQX	.	GT	./.
chr1	146401860	.	C	.	.	LowGQX	END=146401869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401870	.	G	.	.	LowGQX	.	GT	./.
chr1	146401871	.	A	.	.	LowGQX	END=146401872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401873	.	C	.	.	LowGQX	.	GT	./.
chr1	146401874	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401875	.	A	.	.	LowGQX	.	GT	./.
chr1	146401876	.	A	.	.	LowGQX	END=146401884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401885	.	G	.	.	LowGQX	.	GT	./.
chr1	146401886	.	A	.	.	LowGQX	END=146401891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401892	.	A	.	.	LowGQX	.	GT	./.
chr1	146401893	.	G	.	.	LowGQX	END=146401898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401899	.	C	.	.	LowGQX	.	GT	./.
chr1	146401900	.	C	.	.	LowGQX	END=146401905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401906	.	G	.	.	LowGQX	.	GT	./.
chr1	146401907	.	A	.	.	LowGQX	END=146401910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401911	.	T	.	.	LowGQX	.	GT	./.
chr1	146401912	.	G	.	.	LowGQX	END=146401919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401920	.	A	.	.	LowGQX	.	GT	./.
chr1	146401921	.	C	.	.	LowGQX	END=146401928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146401929	.	C	.	.	LowGQX	.	GT	./.
chr1	146401930	.	T	.	.	LowGQX	END=146401948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	146403603	.	A	.	.	LowGQX	END=146403609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:22
chr1	146403610	.	C	.	.	LowGQX;LowMQ	END=146403634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:19
chr1	146403635	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146403636	.	C	.	.	LowGQX;LowMQ	END=146403646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:19
chr1	146403647	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146403648	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:4:6:19
chr1	146403649	.	T	.	.	LowGQX;LowMQ	END=146403650	GT	./.
chr1	146403651	.	T	.	.	LowGQX;LowMQ	END=146403654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:17
chr1	146403655	.	A	.	.	LowGQX;LowMQ	END=146403662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:19
chr1	146403663	.	G	.	.	LowGQX	END=146403664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:6:20
chr1	146403665	.	G	.	.	LowGQX;LowMQ	END=146403675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:6:16
chr1	146403676	.	T	.	.	LowGQX;LowMQ	END=146403677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:12:16
chr1	146403678	.	A	.	39.02	LowGQX;LowMQ	DP=12;MQ=16;MQ0=8	GT:AD:DP:GQ:MQ:GQX	0/0:9:12:9.02:16:9
chr1	146403679	.	T	.	.	LowGQX;LowMQ	END=146403686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:9:16
chr1	146403687	.	A	.	.	LowGQX;LowMQ	END=146403691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:6:16
chr1	146403692	.	G	.	.	LowGQX;LowMQ	END=146403698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:9:18
chr1	146403699	.	G	.	.	LowGQX;LowMQ	END=146403701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:6:17
chr1	146403702	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:12:3:17
chr1	146403703	.	T	.	.	LowGQX;LowMQ	END=146403705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:6:17
chr1	146403706	.	A	.	.	LowGQX;LowMQ	END=146403707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:12:17
chr1	146403708	.	T	.	.	LowGQX;LowMQ	END=146403711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:6:17
chr1	146403712	.	A	.	.	LowGQX;LowMQ	END=146403715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:9:17
chr1	146403716	.	G	.	.	LowGQX;LowMQ	END=146403717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:6:17
chr1	146403718	.	A	.	.	LowGQX;LowMQ	END=146403721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:9:17
chr1	146403722	.	G	.	.	LowGQX;LowMQ	END=146403732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:6:17
chr1	146403733	.	A	.	.	LowGQX;LowMQ	END=146403735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:9:17
chr1	146403736	.	T	.	.	LowGQX;LowMQ	END=146403737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:3:17
chr1	146403738	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:12:12:17
chr1	146403739	.	A	.	.	LowGQX;LowMQ	END=146403740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:3:17
chr1	146403741	.	C	.	.	LowGQX;LowMQ	END=146403743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:9:17
chr1	146403744	.	G	.	.	LowGQX;LowMQ	END=146403749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:6:17
chr1	146403750	.	G	.	.	LowGQX;LowMQ	END=146403751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:9:17
chr1	146403752	.	G	.	.	LowGQX;LowMQ	END=146403753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:6:17
chr1	146403754	.	T	.	.	LowGQX;LowMQ	END=146403756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:3:17
chr1	146403757	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:12:12:17
chr1	146403758	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:12:6:17
chr1	146403759	.	T	.	39.02	LowGQX;LowMQ	DP=12;MQ=17;MQ0=7	GT:AD:DP:GQ:MQ:GQX	0/0:8:12:9.02:17:9
chr1	146403760	.	G	.	.	LowGQX;LowMQ	END=146403762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:9:17
chr1	146403763	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:11:6:18
chr1	146403764	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:11:12:18
chr1	146403765	.	G	.	.	LowGQX;LowMQ	END=146403766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:6:18
chr1	146403767	.	C	.	.	LowGQX;LowMQ	END=146403769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:9:18
chr1	146403770	.	C	.	.	LowGQX;LowMQ	END=146403771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:6:18
chr1	146403772	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:11:0:18
chr1	146403773	.	G	.	.	LowGQX;LowMQ	END=146403776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:6:18
chr1	146403777	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:11:12:18
chr1	146403778	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:11:6:18
chr1	146403779	.	A	.	.	LowGQX;LowMQ	END=146403781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:9:18
chr1	146403782	.	C	.	.	LowGQX;LowMQ	END=146403783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:6:18
chr1	146403784	.	G	.	.	LowGQX;LowMQ	END=146403785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:12:18
chr1	146403786	.	G	.	.	LowGQX;LowMQ	END=146403791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:6:18
chr1	146403792	.	G	.	.	LowGQX;LowMQ	END=146403795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:9:18
chr1	146403796	.	T	.	.	LowGQX;LowMQ	END=146403798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:3:18
chr1	146403799	.	A	.	.	LowGQX;LowMQ	END=146403801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:12:18
chr1	146403802	.	T	.	.	LowGQX;LowMQ	END=146403807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:6:18
chr1	146403808	.	A	.	.	LowGQX;LowMQ	END=146403812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:9:19
chr1	146403813	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:9:6:18
chr1	146404517	.	T	.	.	LowGQX;LowMQ	END=146404866	GT	./.
chr1	146405780	.	C	.	.	LowGQX	END=146405939	GT	./.
chr1	146406318	.	A	.	.	LowGQX;LowMQ	END=146406487	GT	./.
chr1	146406488	.	A	.	.	LowGQX	END=146406571	GT	./.
chr1	146406572	.	A	.	.	LowGQX;LowMQ	END=146406667	GT	./.
chr1	146407886	.	C	.	.	LowGQX	END=146407936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:42
chr1	146407937	.	G	.	.	LowGQX	END=146407951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:41
chr1	146407952	.	C	.	42.02	LowGQX	DP=5;MQ=41;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.02:41:12
chr1	146407953	.	C	.	.	LowGQX	END=146407957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:41
chr1	146407958	.	T	.	.	LowGQX	END=146407964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:41
chr1	146407965	.	C	.	.	LowGQX	END=146407966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:41
chr1	146407967	.	C	.	.	LowGQX	END=146407968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:41
chr1	146407969	.	A	.	.	LowGQX	END=146407971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:41
chr1	146407972	.	T	.	.	LowGQX	END=146407975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:41
chr1	146407976	.	C	.	.	LowGQX	END=146407988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:39
chr1	146407989	.	C	.	.	LowGQX	END=146407990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:41
chr1	146407991	.	G	.	.	LowGQX	END=146407992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:41
chr1	146407993	.	A	.	.	LowGQX	END=146408008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:41
chr1	146408009	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:41
chr1	146408010	.	C	.	.	LowGQX	END=146408011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:39
chr1	146408012	.	C	.	.	LowGQX	END=146408032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:37
chr1	146408033	.	A	.	.	LowGQX	END=146408070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:47
chr1	146408071	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:51
chr1	146408072	.	A	.	.	LowGQX	END=146408089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:51
chr1	146408090	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:52
chr1	146408091	.	G	.	.	LowGQX	END=146408162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:52
chr1	146408163	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:1:55
chr1	146408164	.	T	.	.	LowGQX	END=146408166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:55
chr1	146408167	.	A	.	.	LowGQX	END=146408171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:59
chr1	146408172	.	G	.	.	LowGQX	END=146408180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:59
chr1	146408181	.	G	.	.	LowGQX	END=146408184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:58
chr1	146408185	.	A	.	.	LowGQX	.	GT	./.
chr1	146408186	.	C	.	5.68	LowGQX	DP=1;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:56:0
chr1	146408187	.	C	.	.	LowGQX	END=146408194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:56
chr1	146408195	.	A	.	.	LowGQX	END=146408235	GT	./.
chr1	146409894	.	A	.	.	LowGQX;LowMQ	END=146409918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:10
chr1	146409919	.	G	.	.	LowGQX;LowMQ	END=146409953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:6:16
chr1	146409954	.	G	.	.	LowGQX	END=146409968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:9:25
chr1	146409969	.	A	C	46.74	PASS	BaseQRankSum=-0.550;DP=10;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=26;MQ0=3;MQRankSum=-1.754;QD=4.67;ReadPosRankSum=-0.550;SB=-43.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:4,6:10:64.28:77,0,64:26:47:0.600
chr1	146409970	.	T	.	.	LowGQX	END=146409997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:9:26
chr1	146409998	.	G	.	.	LowGQX	END=146410048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:26
chr1	146410812	.	T	.	.	LowGQX;LowMQ	END=146411145	GT	./.
chr1	146411146	.	A	.	.	LowGQX	END=146411161	GT	./.
chr1	146412062	.	G	.	.	LowGQX;LowMQ	END=146412221	GT	./.
chr1	146412601	.	A	.	.	LowGQX;LowMQ	END=146412940	GT	./.
chr1	146414084	.	C	.	.	LowGQX;LowMQ	END=146414097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:3:4
chr1	146414098	.	G	.	.	LowGQX;LowMQ	END=146414117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:6:4
chr1	146414118	.	G	.	.	LowGQX;LowMQ	END=146414177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:6:4
chr1	146414178	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:89:3:5
chr1	146414179	.	G	.	.	LowGQX;LowMQ	END=146414187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:6:5
chr1	146414188	.	G	.	.	LowGQX;LowMQ	END=146414201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:9:5
chr1	146414202	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:92:6:5
chr1	146414203	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:92:0:5
chr1	146414204	.	G	.	.	LowGQX;LowMQ	END=146414221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:9:5
chr1	146414222	.	A	.	.	LowGQX;LowMQ	END=146414226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:6:5
chr1	146414227	.	T	.	.	LowGQX;LowMQ	END=146414237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:9:5
chr1	146414238	.	T	.	.	LowGQX;LowMQ	END=146414239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:3:5
chr1	146414240	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:62:9:5
chr1	146414241	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:62:0:5
chr1	146414242	.	T	.	.	LowGQX;LowMQ	END=146414243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:9:5
chr1	146418066	.	A	.	.	LowGQX;LowMQ	END=146418070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:12
chr1	146418071	.	G	.	.	LowGQX;LowMQ	END=146418072	GT	./.
chr1	146418073	.	A	.	.	LowGQX;LowMQ	END=146418081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:12
chr1	146418082	.	T	.	.	LowGQX;LowMQ	END=146418083	GT	./.
chr1	146418084	.	T	.	.	LowGQX;LowMQ	END=146418086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:10
chr1	146418087	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146418088	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:4:3:10
chr1	146418089	.	T	.	.	LowGQX;LowMQ	END=146418090	GT	./.
chr1	146418091	.	T	.	.	LowGQX;LowMQ	END=146418093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:10
chr1	146418094	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146418095	.	T	.	.	LowGQX;LowMQ	END=146418098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:10
chr1	146418099	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146418100	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:4:3:10
chr1	146418101	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146418102	.	A	.	.	LowGQX;LowMQ	END=146418103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:10
chr1	146418104	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146418105	.	C	.	.	LowGQX;LowMQ	END=146418111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:10
chr1	146418112	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146418113	.	A	.	.	LowGQX;LowMQ	END=146418118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:9
chr1	146418119	.	G	.	.	LowGQX;LowMQ	END=146418121	GT	./.
chr1	146418122	.	C	.	.	LowGQX;LowMQ	END=146418123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:9
chr1	146418124	.	G	.	.	LowGQX;LowMQ	END=146418125	GT	./.
chr1	146418126	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:7:3:8
chr1	146418127	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146418128	.	G	.	.	LowGQX;LowMQ	END=146418134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:3:7
chr1	146418135	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146418136	.	A	.	.	LowGQX;LowMQ	END=146418139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:3:7
chr1	146418140	.	A	.	.	LowGQX;LowMQ	END=146418142	GT	./.
chr1	146418143	.	T	.	.	LowGQX;LowMQ	END=146418144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:3:7
chr1	146418145	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146418146	.	A	.	.	LowGQX;LowMQ	END=146418148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:3:6
chr1	146418149	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146418150	.	G	.	.	LowGQX;LowMQ	END=146418152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:3:6
chr1	146418153	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146418154	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:10:3:6
chr1	146418155	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146418156	.	A	.	.	LowGQX;LowMQ	END=146418157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:3:6
chr1	146418158	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146418159	.	G	.	.	LowGQX;LowMQ	END=146418162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:3:6
chr1	146418163	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146418164	.	A	.	.	LowGQX;LowMQ	END=146418175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:3:6
chr1	146418176	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146418177	.	G	.	.	LowGQX;LowMQ	END=146418179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:3:6
chr1	146418180	.	C	.	.	LowGQX;LowMQ	END=146418181	GT	./.
chr1	146418182	.	G	.	.	LowGQX;LowMQ	END=146418183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:3:6
chr1	146418184	.	G	.	.	LowGQX;LowMQ	END=146418371	GT	./.
chr1	146418372	.	T	.	.	LowGQX;LowMQ	END=146418374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:12
chr1	146418375	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146418376	.	G	.	.	LowGQX;LowMQ	END=146418379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:12
chr1	146418380	.	C	.	.	LowGQX;LowMQ	END=146418381	GT	./.
chr1	146418382	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:3:3:12
chr1	146418383	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146418384	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:3:3:12
chr1	146418385	.	T	.	.	LowGQX;LowMQ	END=146418386	GT	./.
chr1	146418387	.	G	.	.	LowGQX;LowMQ	END=146418392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:12
chr1	146418393	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146418394	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:2:3:14
chr1	146418395	.	G	.	.	LowGQX;LowMQ	END=146418397	GT	./.
chr1	146418398	.	G	.	.	LowGQX;LowMQ	END=146418409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:14
chr1	146418410	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146418411	.	G	.	.	LowGQX;LowMQ	END=146418412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:14
chr1	146418413	.	T	.	.	LowGQX	END=146418414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:20
chr1	146418415	.	A	.	.	LowGQX	.	GT	./.
chr1	146418425	.	T	.	.	LowGQX	END=146418427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:20
chr1	146418428	.	A	.	.	LowGQX	.	GT	./.
chr1	146418429	.	T	.	.	LowGQX	END=146418435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:20
chr1	146418436	.	T	.	.	LowGQX	.	GT	./.
chr1	146418437	.	T	.	.	LowGQX	END=146418442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:20
chr1	146418443	.	A	.	.	LowGQX	.	GT	./.
chr1	146418444	.	C	.	.	LowGQX	END=146418456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:20
chr1	146418457	.	T	.	.	LowGQX	.	GT	./.
chr1	146418458	.	C	.	.	LowGQX	END=146418480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:20
chr1	146418481	.	T	.	.	LowGQX	.	GT	./.
chr1	146418482	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:20
chr1	146418483	.	A	.	.	LowGQX	.	GT	./.
chr1	146418484	.	G	.	.	LowGQX	END=146418490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:20
chr1	146418491	.	T	.	6.42	LowGQX	DP=1;MQ=20;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:20:0
chr1	146418492	.	T	.	.	LowGQX	.	GT	./.
chr1	146418493	.	G	.	.	LowGQX	END=146418517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:20
chr1	146418518	.	C	.	.	LowGQX	.	GT	./.
chr1	146418519	.	C	.	.	LowGQX	END=146418521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:20
chr1	146418522	.	T	.	.	LowGQX	END=146418584	GT	./.
chr1	146419260	.	T	.	.	LowGQX	.	GT	./.
chr1	146419261	.	G	.	.	LowGQX;LowMQ	END=146419345	GT	./.
chr1	146419346	.	C	.	.	LowGQX;LowMQ	END=146419373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:3:8
chr1	146419374	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146419375	.	C	.	.	LowGQX;LowMQ	END=146419379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:3:8
chr1	146419380	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146419381	.	G	.	.	LowGQX;LowMQ	END=146419383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:3:8
chr1	146419384	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146419385	.	A	.	.	LowGQX;LowMQ	END=146419389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:3:8
chr1	146419390	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146419391	.	C	.	.	LowGQX;LowMQ	END=146419402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:3:8
chr1	146419403	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146419404	.	G	.	.	LowGQX;LowMQ	END=146419408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:3:8
chr1	146419409	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146419410	.	T	.	.	LowGQX;LowMQ	END=146419419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:8
chr1	146419947	.	A	.	.	LowGQX	END=146419950	GT	./.
chr1	146419951	.	A	.	.	LowGQX;LowMQ	END=146419955	GT	./.
chr1	146419956	.	A	.	.	LowGQX	END=146419960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:23
chr1	146419961	.	G	.	.	LowGQX	.	GT	./.
chr1	146419962	.	G	.	.	LowGQX	END=146419970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:23
chr1	146419971	.	G	A	9.80	LowGQ;LowGQX;SB	DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=23;MQ0=2;QD=3.27;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,1:3:3.01:39,3,0:23:3:0.333
chr1	146419972	.	T	.	.	LowGQX	END=146419986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:23
chr1	146419987	.	G	.	.	LowGQX	.	GT	./.
chr1	146419988	.	G	.	.	LowGQX	END=146419999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:23
chr1	146420000	.	C	.	.	LowGQX	.	GT	./.
chr1	146420001	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:23
chr1	146420002	.	T	.	.	LowGQX	.	GT	./.
chr1	146420003	.	T	.	.	LowGQX	END=146420006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:23
chr1	146420007	.	C	.	.	LowGQX	.	GT	./.
chr1	146420008	.	C	.	.	LowGQX	END=146420010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:23
chr1	146420011	.	T	.	.	LowGQX	.	GT	./.
chr1	146420012	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:23
chr1	146420013	.	T	.	.	LowGQX	.	GT	./.
chr1	146420014	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:28
chr1	146420015	.	C	.	.	LowGQX	.	GT	./.
chr1	146420016	.	C	.	.	LowGQX	END=146420021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:28
chr1	146420022	.	C	.	.	LowGQX	END=146420081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:31
chr1	146420082	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:38
chr1	146420083	.	T	.	.	LowGQX	END=146420109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:38
chr1	146420110	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:38
chr1	146420111	.	T	.	.	LowGQX	END=146420118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:38
chr1	146420119	.	T	C	14.93	LowGQX	BaseQRankSum=-0.198;DP=7;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=38;MQ0=0;MQRankSum=-0.922;QD=2.13;ReadPosRankSum=0.198;SB=-11.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:5,2:7:44.78:45,0,112:38:15:0.286
chr1	146420120	.	C	.	.	LowGQX	END=146420168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:35
chr1	146420169	.	T	.	.	LowGQX	END=146420191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:34
chr1	146420827	.	C	.	.	LowGQX;LowMQ	END=146420986	GT	./.
chr1	146421547	.	C	.	.	LowGQX	END=146421731	GT	./.
chr1	146422357	.	C	.	.	LowGQX	END=146422516	GT	./.
chr1	146423162	.	G	.	.	LowGQX;LowMQ	END=146423360	GT	./.
chr1	146423998	.	G	.	.	LowGQX;LowMQ	END=146424158	GT	./.
chr1	146424772	.	C	.	.	LowGQX;LowMQ	END=146424956	GT	./.
chr1	146425592	.	C	.	.	LowGQX;LowMQ	END=146425751	GT	./.
chr1	146426312	.	C	.	.	LowGQX;LowMQ	END=146426352	GT	./.
chr1	146426353	.	A	.	.	LowGQX	END=146426357	GT	./.
chr1	146426358	.	G	.	.	LowGQX;LowMQ	END=146426496	GT	./.
chr1	146427122	.	C	.	.	LowGQX	END=146427153	GT	./.
chr1	146427154	.	G	.	.	LowGQX;LowMQ	END=146427281	GT	./.
chr1	146427927	.	G	.	.	LowGQX;LowMQ	END=146428125	GT	./.
chr1	146428763	.	G	.	.	LowGQX;LowMQ	END=146428923	GT	./.
chr1	146429537	.	C	.	.	LowGQX	END=146429692	GT	./.
chr1	146429693	.	G	.	.	LowGQX;LowMQ	END=146429721	GT	./.
chr1	146430357	.	C	.	.	LowGQX;LowMQ	END=146430516	GT	./.
chr1	146431077	.	C	.	.	LowGQX;LowMQ	END=146431100	GT	./.
chr1	146431101	.	G	.	.	LowGQX	END=146431261	GT	./.
chr1	146431887	.	C	.	.	LowGQX;LowMQ	END=146432046	GT	./.
chr1	146432692	.	G	.	.	LowGQX;LowMQ	END=146432811	GT	./.
chr1	146432812	.	G	.	.	LowGQX	END=146432838	GT	./.
chr1	146432839	.	A	.	.	LowGQX;LowMQ	END=146432890	GT	./.
chr1	146433528	.	G	.	.	LowGQX;LowMQ	END=146433688	GT	./.
chr1	146434302	.	C	.	.	LowGQX	END=146434486	GT	./.
chr1	146435122	.	C	.	.	LowGQX;LowMQ	END=146435281	GT	./.
chr1	146435842	.	C	.	.	LowGQX	END=146436015	GT	./.
chr1	146436016	.	T	.	.	LowGQX;LowMQ	END=146436026	GT	./.
chr1	146436652	.	C	.	.	LowGQX	END=146436811	GT	./.
chr1	146437457	.	G	.	.	LowGQX;LowMQ	END=146437559	GT	./.
chr1	146437560	.	C	.	.	LowGQX	END=146437602	GT	./.
chr1	146437603	.	C	.	.	LowGQX;LowMQ	END=146437655	GT	./.
chr1	146438293	.	G	.	.	LowGQX;LowMQ	END=146438453	GT	./.
chr1	146439067	.	C	.	.	LowGQX;LowMQ	END=146439069	GT	./.
chr1	146439070	.	C	.	.	LowGQX	END=146439195	GT	./.
chr1	146439196	.	A	.	.	LowGQX;LowMQ	END=146439251	GT	./.
chr1	146439883	.	A	.	.	LowGQX;LowMQ	END=146440042	GT	./.
chr1	146440607	.	C	.	.	LowGQX;LowMQ	END=146440637	GT	./.
chr1	146440638	.	G	.	.	LowGQX	END=146440791	GT	./.
chr1	146441424	.	C	.	.	LowGQX;LowMQ	END=146441583	GT	./.
chr1	146442142	.	C	.	.	LowGQX	END=146442250	GT	./.
chr1	146442251	.	G	.	.	LowGQX;LowMQ	END=146442326	GT	./.
chr1	146442962	.	C	.	.	LowGQX;LowMQ	END=146443121	GT	./.
chr1	146443621	.	A	.	.	LowGQX;LowMQ	END=146443632	GT	./.
chr1	146443633	.	T	.	.	LowGQX	END=146443751	GT	./.
chr1	146443752	.	G	.	.	LowGQX;LowMQ	END=146443865	GT	./.
chr1	146444491	.	C	.	.	LowGQX	END=146444650	GT	./.
chr1	146445298	.	G	.	.	LowGQX;LowMQ	END=146445496	GT	./.
chr1	146446102	.	C	.	.	LowGQX;LowMQ	END=146446244	GT	./.
chr1	146446245	.	T	.	.	LowGQX	END=146446261	GT	./.
chr1	146446822	.	C	.	.	LowGQX	END=146447006	GT	./.
chr1	146447642	.	C	.	.	LowGQX	END=146447707	GT	./.
chr1	146447708	.	T	.	.	LowGQX;LowMQ	END=146447801	GT	./.
chr1	146448302	.	A	.	.	LowGQX;LowMQ	END=146448546	GT	./.
chr1	146449172	.	C	.	.	LowGQX;LowMQ	END=146449197	GT	./.
chr1	146449198	.	T	.	.	LowGQX	END=146449300	GT	./.
chr1	146449301	.	G	.	.	LowGQX;LowMQ	END=146449331	GT	./.
chr1	146449977	.	G	.	.	LowGQX;LowMQ	END=146450175	GT	./.
chr1	146450813	.	G	.	.	LowGQX;LowMQ	END=146450973	GT	./.
chr1	146451587	.	C	.	.	LowGQX	END=146451707	GT	./.
chr1	146451708	.	C	.	.	LowGQX;LowMQ	END=146451771	GT	./.
chr1	146452407	.	C	.	.	LowGQX;LowMQ	END=146452566	GT	./.
chr1	146453126	.	C	.	.	LowGQX	END=146453310	GT	./.
chr1	146453936	.	C	.	.	LowGQX;LowMQ	END=146454095	GT	./.
chr1	146454737	.	G	.	.	LowGQX;LowMQ	END=146454839	GT	./.
chr1	146454840	.	C	.	.	LowGQX	END=146454935	GT	./.
chr1	146455573	.	G	.	.	LowGQX;LowMQ	END=146455733	GT	./.
chr1	146456347	.	C	.	.	LowGQX	END=146456408	GT	./.
chr1	146456409	.	C	.	.	LowGQX;LowMQ	END=146456531	GT	./.
chr1	146457167	.	C	.	.	LowGQX;LowMQ	END=146457326	GT	./.
chr1	146457826	.	A	.	.	LowGQX;LowMQ	END=146458014	GT	./.
chr1	146458015	.	A	.	.	LowGQX	END=146458070	GT	./.
chr1	146458696	.	C	.	.	LowGQX	END=146458855	GT	./.
chr1	146459497	.	G	.	.	LowGQX;LowMQ	END=146459505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:16
chr1	146459506	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146459507	.	G	.	.	LowGQX;LowMQ	END=146459520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:16
chr1	146459521	.	T	.	33	LowGQX;LowMQ	DP=6;MQ=16;MQ0=5	GT:AD:DP:GQ:MQ:GQX	0/0:4:6:3.01:16:3
chr1	146459522	.	A	.	.	LowGQX;LowMQ	END=146459526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:16
chr1	146459527	.	A	.	.	LowGQX;LowMQ	END=146459695	GT	./.
chr1	146460333	.	G	.	.	LowGQX;LowMQ	END=146460493	GT	./.
chr1	146461107	.	C	.	.	LowGQX	END=146461291	GT	./.
chr1	146461927	.	C	.	.	LowGQX;LowMQ	END=146462086	GT	./.
chr1	146462586	.	A	.	.	LowGQX;LowMQ	END=146462669	GT	./.
chr1	146462670	.	G	.	.	LowGQX	END=146462830	GT	./.
chr1	146463456	.	C	.	.	LowGQX	END=146463615	GT	./.
chr1	146464263	.	G	.	.	LowGQX;LowMQ	END=146464370	GT	./.
chr1	146464371	.	A	.	.	LowGQX	END=146464461	GT	./.
chr1	146465099	.	G	.	.	LowGQX;LowMQ	END=146465114	GT	./.
chr1	146465115	.	G	.	.	LowGQX;LowMQ	END=146465120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:10
chr1	146465121	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146465122	.	G	.	.	LowGQX;LowMQ	END=146465130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:3:10
chr1	146465131	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146465132	.	A	.	.	LowGQX;LowMQ	END=146465135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:3:10
chr1	146465136	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146465137	.	T	.	.	LowGQX;LowMQ	END=146465139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:3:10
chr1	146465140	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146465141	.	T	.	.	LowGQX;LowMQ	END=146465143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:3:10
chr1	146465144	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146465145	.	T	.	.	LowGQX;LowMQ	END=146465148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:3:10
chr1	146465149	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146465150	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:17:3:10
chr1	146465151	.	A	.	.	LowGQX;LowMQ	END=146465152	GT	./.
chr1	146465153	.	A	.	.	LowGQX;LowMQ	END=146465156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:3:10
chr1	146465157	.	A	.	.	LowGQX;LowMQ	END=146465158	GT	./.
chr1	146465159	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:19:3:9
chr1	146465160	.	A	.	.	LowGQX;LowMQ	END=146465161	GT	./.
chr1	146465162	.	A	.	.	LowGQX;LowMQ	END=146465167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:3:9
chr1	146465168	.	A	.	.	LowGQX;LowMQ	END=146465169	GT	./.
chr1	146465170	.	G	.	.	LowGQX;LowMQ	END=146465174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:3:9
chr1	146465175	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146465176	.	G	.	.	LowGQX;LowMQ	END=146465177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:3:9
chr1	146465178	.	A	.	.	LowGQX;LowMQ	END=146465180	GT	./.
chr1	146465181	.	G	.	.	LowGQX;LowMQ	END=146465182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:3:9
chr1	146465183	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146465184	.	G	.	.	LowGQX;LowMQ	END=146465190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:3:9
chr1	146465191	.	A	.	.	LowGQX;LowMQ	END=146465192	GT	./.
chr1	146465193	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:20:3:9
chr1	146465194	.	A	.	.	LowGQX;LowMQ	END=146465195	GT	./.
chr1	146465196	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:20:3:9
chr1	146465197	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146465198	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:20:3:9
chr1	146465199	.	A	.	.	LowGQX;LowMQ	END=146465202	GT	./.
chr1	146465203	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:19:3:9
chr1	146465204	.	A	.	.	LowGQX;LowMQ	END=146465205	GT	./.
chr1	146465206	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:19:0:9
chr1	146465207	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146465208	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:19:3:9
chr1	146465209	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146465210	.	A	.	.	LowGQX;LowMQ	END=146465211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:3:9
chr1	146465212	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146465213	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:19:3:9
chr1	146465214	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146465215	.	G	.	.	LowGQX;LowMQ	END=146465217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:3:9
chr1	146465218	.	A	.	.	LowGQX;LowMQ	END=146465219	GT	./.
chr1	146465220	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:20:3:9
chr1	146465221	.	A	.	.	LowGQX;LowMQ	END=146465222	GT	./.
chr1	146465223	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:20:3:9
chr1	146465224	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146465225	.	G	.	.	LowGQX;LowMQ	END=146465226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:3:9
chr1	146465227	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	146465228	.	G	.	.	LowGQX;LowMQ	END=146465230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:3:9
chr1	146465231	.	G	.	.	LowGQX;LowMQ	END=146465259	GT	./.
chr1	146465877	.	G	.	.	LowGQX	END=146465885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	146465886	.	G	.	.	LowGQX	.	GT	./.
chr1	146465887	.	C	.	.	LowGQX	END=146465902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	146465903	.	G	.	.	LowGQX	END=146465904	GT	./.
chr1	146465905	.	A	.	.	LowGQX	END=146465906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	146465907	.	A	.	.	LowGQX	.	GT	./.
chr1	146465908	.	G	.	.	LowGQX	END=146465916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	146465917	.	C	.	.	LowGQX	.	GT	./.
chr1	146465918	.	T	.	.	LowGQX	END=146465924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:51
chr1	146465925	.	A	.	.	LowGQX	.	GT	./.
chr1	146465926	.	C	.	.	LowGQX	END=146465947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:51
chr1	146465948	.	A	.	.	LowGQX	.	GT	./.
chr1	146465949	.	C	.	.	LowGQX	END=146465967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:51
chr1	146465968	.	A	.	.	LowGQX	.	GT	./.
chr1	146465969	.	C	.	.	LowGQX	END=146465988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:51
chr1	146465989	.	C	.	.	LowGQX	.	GT	./.
chr1	146465990	.	T	.	.	LowGQX	END=146466018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146466019	.	A	.	.	LowGQX	.	GT	./.
chr1	146466020	.	C	.	.	LowGQX	END=146466022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146466023	.	C	.	.	LowGQX	END=146466089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:59
chr1	146466090	.	T	.	36.01	LowGQX	DP=4;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:59:6
chr1	146466091	.	C	.	.	LowGQX	END=146466121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:59
chr1	146491108	.	T	.	.	LowGQX	END=146491253	GT	./.
chr1	146493270	.	G	.	.	LowGQX	END=146493449	GT	./.
chr1	146494495	.	C	.	.	LowGQX	END=146494638	GT	./.
chr1	146495572	.	C	.	.	LowGQX	END=146495647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146495648	.	T	.	.	LowGQX	END=146495798	GT	./.
chr1	146496367	.	C	.	.	LowGQX	END=146496483	GT	./.
chr1	146514468	.	A	.	.	LowGQX	END=146514567	GT	./.
chr1	146631133	.	A	.	.	LowGQX	END=146631196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	146631197	.	T	.	.	LowGQX	END=146631232	GT	./.
chr1	146633249	.	T	.	.	LowGQX	END=146633361	GT	./.
chr1	146634017	.	A	.	.	LowGQX	END=146634154	GT	./.
chr1	146638075	.	A	.	.	LowGQX	END=146638199	GT	./.
chr1	146638422	.	T	.	.	LowGQX	END=146638521	GT	./.
chr1	146639344	.	A	.	.	LowGQX	END=146639514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643536	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643537	.	C	.	.	LowGQX	.	GT	./.
chr1	146643538	.	T	.	.	LowGQX	END=146643539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643540	.	A	.	.	LowGQX	.	GT	./.
chr1	146643541	.	C	.	.	LowGQX	END=146643542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643543	.	C	.	.	LowGQX	.	GT	./.
chr1	146643544	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643545	.	A	.	.	LowGQX	END=146643546	GT	./.
chr1	146643547	.	C	.	.	LowGQX	END=146643548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643549	.	G	.	.	LowGQX	.	GT	./.
chr1	146643550	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643551	.	G	.	.	LowGQX	.	GT	./.
chr1	146643552	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643553	.	G	.	.	LowGQX	END=146643565	GT	./.
chr1	146643566	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643567	.	C	.	.	LowGQX	END=146643570	GT	./.
chr1	146643571	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643572	.	G	.	.	LowGQX	END=146643603	GT	./.
chr1	146643604	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643605	.	G	.	.	LowGQX	.	GT	./.
chr1	146643606	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643607	.	A	.	.	LowGQX	.	GT	./.
chr1	146643608	.	C	.	.	LowGQX	END=146643610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643611	.	C	.	.	LowGQX	.	GT	./.
chr1	146643612	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643613	.	C	.	.	LowGQX	.	GT	./.
chr1	146643614	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643615	.	C	.	.	LowGQX	.	GT	./.
chr1	146643616	.	C	.	.	LowGQX	END=146643619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643620	.	A	.	.	LowGQX	.	GT	./.
chr1	146643621	.	T	.	.	LowGQX	END=146643624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643625	.	G	.	.	LowGQX	END=146643626	GT	./.
chr1	146643627	.	G	.	.	LowGQX	END=146643629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643630	.	C	.	.	LowGQX	.	GT	./.
chr1	146643631	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643632	.	T	.	.	LowGQX	.	GT	./.
chr1	146643633	.	T	.	.	LowGQX	END=146643635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643636	.	C	.	.	LowGQX	END=146643637	GT	./.
chr1	146643638	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643639	.	G	.	.	LowGQX	.	GT	./.
chr1	146643640	.	G	.	.	LowGQX	END=146643648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643649	.	G	.	.	LowGQX	END=146643651	GT	./.
chr1	146643652	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643653	.	G	.	.	LowGQX	END=146643654	GT	./.
chr1	146643655	.	G	.	.	LowGQX	END=146643656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643657	.	C	.	.	LowGQX	END=146643658	GT	./.
chr1	146643659	.	T	.	.	LowGQX	END=146643660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643661	.	G	.	.	LowGQX	.	GT	./.
chr1	146643662	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643663	.	A	.	.	LowGQX	END=146643667	GT	./.
chr1	146643668	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643669	.	C	.	.	LowGQX	.	GT	./.
chr1	146643670	.	A	.	.	LowGQX	END=146643671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643672	.	C	.	.	LowGQX	.	GT	./.
chr1	146643673	.	C	.	.	LowGQX	END=146643674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643675	.	T	.	.	LowGQX	.	GT	./.
chr1	146643676	.	G	.	.	LowGQX	END=146643677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643678	.	C	.	.	LowGQX	END=146643680	GT	./.
chr1	146643681	.	C	.	.	LowGQX	END=146643683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643684	.	G	.	.	LowGQX	.	GT	./.
chr1	146643685	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643686	.	C	.	.	LowGQX	.	GT	./.
chr1	146643687	.	G	.	.	LowGQX	END=146643690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643691	.	C	.	.	LowGQX	.	GT	./.
chr1	146643692	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643693	.	C	.	.	LowGQX	END=146643695	GT	./.
chr1	146643696	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643697	.	C	.	.	LowGQX	.	GT	./.
chr1	146643698	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643699	.	C	.	.	LowGQX	END=146643700	GT	./.
chr1	146643701	.	C	.	.	LowGQX	END=146643704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643705	.	C	.	.	LowGQX	.	GT	./.
chr1	146643706	.	G	.	.	LowGQX	END=146643715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643716	.	T	.	.	LowGQX	END=146643717	GT	./.
chr1	146643718	.	T	.	.	LowGQX	END=146643719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146643720	.	C	.	.	LowGQX	.	GT	./.
chr1	146643721	.	C	.	.	LowGQX	END=146643725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	146649693	.	A	.	.	LowGQX	END=146651078	GT	./.
chr1	146656070	.	G	.	.	PASS	END=146656101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:83:60
chr1	146656102	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:72:60
chr1	146656103	.	A	.	.	PASS	END=146656197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	146656198	.	C	.	.	PASS	END=146656209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	146658477	.	A	.	.	PASS	END=146658509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	146658510	.	G	.	.	PASS	END=146658562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr1	146658563	.	C	.	.	PASS	END=146658689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:268:99:60
chr1	146658690	.	A	.	.	PASS	END=146658754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	146658755	.	C	.	.	PASS	END=146658804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	146658805	.	G	.	.	PASS	END=146658813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	146658814	.	T	.	.	PASS	END=146658826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	146661743	.	G	.	.	PASS	END=146661775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	146661776	.	A	.	.	PASS	END=146661827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	146661828	.	C	.	.	PASS	END=146661842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	146672732	.	A	.	.	PASS	END=146672750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	146672751	.	G	.	.	PASS	END=146672775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	146672776	.	T	.	.	PASS	END=146672905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr1	146672906	.	C	T	8322.05	PASS	BaseQRankSum=-0.771;DP=257;Dels=0.00;FS=3.908;HRun=0;HaplotypeScore=10.4683;MQ=60;MQ0=0;MQRankSum=-1.272;QD=32.38;ReadPosRankSum=-0.907;SB=-3735.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,255:257:99:8322,596,0:60:99:0.996
chr1	146672907	.	G	.	.	PASS	END=146672930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	146672931	.	G	.	.	PASS	END=146672985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	146672986	.	C	.	.	PASS	END=146673085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	146673086	.	T	.	.	PASS	END=146673088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	146680383	.	C	.	.	PASS	END=146680399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	146680400	.	T	.	.	PASS	END=146680417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	146680418	.	G	.	.	PASS	END=146680451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	146680452	.	C	.	.	PASS	END=146680536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr1	146680537	.	A	.	.	PASS	END=146680567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	146680568	.	C	.	.	PASS	END=146680583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	146680584	.	C	.	.	PASS	END=146680603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	146680604	.	T	.	.	PASS	END=146680615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	146683959	.	A	.	.	PASS	END=146683999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	146684000	.	T	.	.	PASS	END=146684061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	146684062	.	A	.	.	PASS	END=146684092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	146684093	.	C	.	.	PASS	END=146684105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	146684873	.	A	.	.	PASS	END=146684879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	146684880	.	A	.	.	PASS	END=146684942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	146684943	.	A	.	.	PASS	END=146684997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:96:60
chr1	146684998	.	T	.	.	PASS	END=146685024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	146685025	.	T	.	.	PASS	END=146685034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	146685035	.	G	.	.	PASS	END=146685039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	146687322	.	A	.	.	PASS	END=146687367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	146687368	.	T	.	.	PASS	END=146687459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	146687460	.	G	.	.	PASS	END=146687514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	146696485	.	A	.	.	PASS	END=146696570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	146696571	.	A	.	.	PASS	END=146696574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	146696575	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:72:60
chr1	146696576	.	G	.	.	PASS	END=146696591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	146696592	.	C	.	.	PASS	END=146696593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	146696594	.	C	.	.	PASS	END=146696598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	146696599	.	A	.	.	PASS	END=146696623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	146714352	.	C	.	.	LowGQX	END=146714358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	146714359	.	G	.	.	LowGQX	END=146714362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	146714363	.	G	.	.	LowGQX	END=146714385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	146714386	.	C	.	.	LowGQX	END=146714391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	146714392	.	G	C	239.08	LowGQ;LowGQX;SB	DP=7;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=34.15;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,7:7:21.07:272,21,0:60:21:1.000
chr1	146714393	.	C	.	.	LowGQX	END=146714435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	146714436	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:60
chr1	146714437	.	G	.	.	LowGQX	END=146714443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	146714444	.	G	.	.	LowGQX	END=146714467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	146714468	.	T	.	.	LowGQX	END=146714481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	146714482	.	T	.	.	LowGQX	END=146714499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	146714500	.	A	.	.	LowGQX	END=146714508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	146714509	.	A	.	.	LowGQX	END=146714518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	146714519	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	146714520	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	146724276	.	A	.	.	PASS	END=146724294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	146724295	.	T	.	.	PASS	END=146724392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	146726523	.	A	.	.	PASS	END=146726606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	146726607	.	G	.	.	PASS	END=146726633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	146727466	.	A	.	.	PASS	END=146727558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:263:99:60
chr1	146727559	.	C	.	.	PASS	END=146727578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	146727579	.	T	.	.	PASS	END=146727584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	146728151	.	G	.	.	PASS	END=146728162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	146728162	.	T	TA	4440.58	PASS	DP=106;FS=0.000;HRun=1;HaplotypeScore=422.0055;MQ=60;MQ0=0;QD=41.89;SB=-1809.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,104:106:99:4441,316,0:60:99:0.990
chr1	146728163	.	A	.	.	PASS	END=146728250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	146731482	.	C	.	.	PASS	END=146731503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	146731504	.	G	.	.	PASS	END=146731581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	146736049	.	G	.	.	PASS	END=146736081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	146736082	.	T	.	.	PASS	END=146736106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	146736107	.	G	.	.	PASS	END=146736167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	146736168	.	C	.	.	PASS	END=146736245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr1	146737589	.	A	.	.	PASS	END=146737605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	146737606	.	A	.	.	PASS	END=146737684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	146737685	.	A	.	.	PASS	END=146737748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	146739082	.	C	.	.	PASS	END=146739159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	146739160	.	A	.	.	PASS	END=146739180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	146739181	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:99:60
chr1	146740439	.	A	.	.	PASS	END=146740532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	146740533	.	T	.	.	PASS	END=146740539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	146742580	.	T	.	.	PASS	END=146742651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	146742652	.	A	.	.	PASS	END=146742679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:84:60
chr1	146743830	.	A	.	.	PASS	END=146743838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	146743839	.	C	.	.	PASS	END=146743857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	146743858	.	T	.	.	PASS	END=146743944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	146747015	.	A	.	.	PASS	END=146747054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	146747055	.	A	.	.	PASS	END=146747109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	146747110	.	C	.	.	PASS	END=146747125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	146747126	.	A	.	.	PASS	END=146747133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	146747766	.	A	.	.	PASS	END=146747829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	146747830	.	C	.	.	PASS	END=146747880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	146747881	.	C	.	.	PASS	END=146747898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	146747899	.	C	.	.	PASS	END=146747923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	146751667	.	T	.	.	PASS	END=146751738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	146751739	.	C	.	.	PASS	END=146751781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	146751782	.	A	C	6130.78	PASS	BaseQRankSum=-0.608;DP=229;Dels=0.00;FS=3.841;HRun=1;HaplotypeScore=16.2008;MQ=60;MQ0=0;MQRankSum=-0.775;QD=26.77;ReadPosRankSum=0.775;SB=-3025.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,227:229:99:6131,433,0:60:99:0.996
chr1	146751783	.	C	.	.	PASS	END=146751866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	146756022	.	A	.	.	PASS	END=146756046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	146756047	.	G	.	.	PASS	END=146756151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	146756152	.	T	.	.	PASS	END=146756174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	146756999	.	A	.	.	PASS	END=146757010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	146757011	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:75:60
chr1	146757012	.	A	.	.	PASS	END=146757088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	146757089	.	A	.	.	PASS	END=146757093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	146757094	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:67:60
chr1	146757095	.	C	.	.	PASS	END=146757135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	146757136	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:72:60
chr1	146757137	.	A	.	.	PASS	END=146757166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	146757973	.	A	.	.	PASS	END=146757997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	146757998	.	A	.	.	PASS	END=146758020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	146758021	.	T	.	.	PASS	END=146758156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr1	146758157	.	C	.	.	PASS	END=146758174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	146758175	.	T	.	.	PASS	END=146758179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	146759312	.	A	.	.	PASS	END=146759317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	146759318	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:60
chr1	146759319	.	T	.	.	PASS	END=146759329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	146759330	.	G	.	.	PASS	END=146759352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	146759353	.	C	.	.	PASS	END=146759414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	146763150	.	C	.	.	PASS	END=146763184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	146763185	.	T	.	.	PASS	END=146763249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	146765290	.	A	.	.	PASS	END=146765340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	146765341	.	G	.	.	PASS	END=146765406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	146765407	.	G	.	.	PASS	END=146765408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	146766089	.	A	.	.	PASS	END=146766139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr1	146766140	.	G	.	.	PASS	END=146766200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	146766201	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:99:60
chr1	146767050	.	A	.	.	PASS	END=146767148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	146767149	.	G	T	5881.38	PASS	DP=189;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=12.4052;MQ=60;MQ0=0;QD=31.12;SB=-2322.85	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,189:189:99:5881,442,0:60:99:1.000
chr1	146767150	.	C	.	.	PASS	END=146767176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	146767177	.	A	.	.	PASS	END=146767201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	147083613	.	C	.	.	PASS	END=147083675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	147083676	.	G	.	.	PASS	END=147083701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	147083702	.	T	.	.	PASS	END=147083710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	147083711	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr1	147083712	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:99:60
chr1	147084669	.	T	.	.	PASS	END=147084697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	147084698	.	C	.	.	PASS	END=147084716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	147084717	.	C	.	.	PASS	END=147084852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:277:99:60
chr1	147084853	.	A	.	.	PASS	END=147084886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	147084887	.	A	.	.	PASS	END=147084972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	147084973	.	T	.	.	PASS	END=147085005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	147085006	.	T	.	.	PASS	END=147085008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	147086214	.	T	.	.	PASS	END=147086244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	147086245	.	C	.	.	PASS	END=147086301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	147086302	.	A	.	.	PASS	END=147086308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	147086309	.	A	.	.	PASS	END=147086417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	147087601	.	A	.	.	PASS	END=147087648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	147087649	.	T	.	.	PASS	END=147087704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	147090620	.	A	.	.	PASS	END=147090631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	147090632	.	T	.	.	PASS	END=147090660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	147090661	.	C	.	.	PASS	END=147090778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	147090779	.	C	.	.	PASS	END=147091045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr1	147091046	.	C	.	.	PASS	END=147091262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	147091263	.	A	.	.	PASS	END=147091320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:290:99:60
chr1	147091321	.	T	.	.	PASS	END=147091448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:309:99:60
chr1	147091449	.	C	.	.	PASS	END=147091557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	147091558	.	C	.	.	PASS	END=147091683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:60
chr1	147091684	.	G	.	.	PASS	END=147091729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	147091730	.	T	.	.	PASS	END=147091793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	147091794	.	T	.	.	PASS	END=147091911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	147091912	.	G	.	.	PASS	END=147092111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	147092112	.	G	A	3139.52	PASS	BaseQRankSum=1.870;DP=239;Dels=0.00;FS=4.638;HRun=2;HaplotypeScore=42.6618;MQ=60;MQ0=0;MQRankSum=-0.174;QD=13.14;ReadPosRankSum=1.587;SB=-1828.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:107,128:239:99:3170,0,2760:60:99:0.545
chr1	147092113	.	G	.	.	PASS	END=147092244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	147092245	.	C	.	.	PASS	END=147092634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	147092635	.	C	.	.	PASS	END=147092857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	147092858	.	A	.	.	PASS	END=147092865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	147094070	.	A	.	.	PASS	END=147094142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	147094143	.	C	.	.	PASS	END=147094152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	147094153	.	T	.	.	PASS	END=147094223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	147094224	.	C	.	.	PASS	END=147094259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	147094260	.	A	.	.	PASS	END=147094334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	147095641	.	A	.	.	PASS	END=147095690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	147095691	.	T	.	.	PASS	END=147095766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	147095767	.	T	.	.	PASS	END=147095854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	147095855	.	G	.	.	PASS	END=147095937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	147095938	.	C	.	.	PASS	END=147096143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr1	147096144	.	A	.	.	PASS	END=147096345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr1	147096346	.	T	.	.	PASS	END=147096482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	147096483	.	C	.	.	PASS	END=147096759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr1	147096760	.	A	.	.	PASS	END=147096762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	147119223	.	A	.	.	LowGQX	END=147119272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	147119273	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	147119274	.	T	.	.	LowGQX	END=147119276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	147119277	.	T	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	147119278	.	A	.	.	LowGQX	END=147119320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	147119321	.	C	.	.	LowGQX	END=147119370	GT	./.
chr1	147120046	.	A	.	.	LowGQX	END=147120215	GT	./.
chr1	147121884	.	C	.	.	LowGQX	END=147121896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	147121897	.	A	.	.	LowGQX	.	GT	./.
chr1	147121898	.	G	.	.	LowGQX	END=147121899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	147121900	.	T	.	.	LowGQX	.	GT	./.
chr1	147121901	.	C	.	.	LowGQX	END=147121976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	147121977	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	147121978	.	G	.	.	LowGQX	END=147122006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	147122007	.	G	.	.	LowGQX	END=147122043	GT	./.
chr1	147124250	.	A	.	.	LowGQX	END=147124354	GT	./.
chr1	147124383	.	A	.	.	LowGQX	END=147124482	GT	./.
chr1	147126307	.	A	.	.	LowGQX	END=147126325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	147126326	.	T	.	.	LowGQX	.	GT	./.
chr1	147126327	.	G	.	.	LowGQX	END=147126438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	147126439	.	C	.	.	LowGQX	END=147126443	GT	./.
chr1	147127270	.	A	.	.	LowGQX	END=147127369	GT	./.
chr1	147131065	.	A	.	.	LowGQX	END=147131164	GT	./.
chr1	147131509	.	A	.	.	LowGQX	END=147131587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	147131588	.	G	.	.	LowGQX	END=147131643	GT	./.
chr1	147131760	.	A	.	.	LowGQX	END=147131892	GT	./.
chr1	147141950	.	A	.	.	LowGQX	END=147142172	GT	./.
chr1	147230219	.	C	.	.	PASS	END=147230222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	147230223	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:3:60
chr1	147230224	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:21:60
chr1	147230225	.	G	.	.	PASS	END=147230227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	147230228	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	147230229	.	C	.	.	PASS	END=147230236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	147230237	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:3:60
chr1	147230238	.	C	.	.	PASS	END=147230239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	147230240	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	147230241	.	C	.	.	PASS	END=147230245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	147230246	.	T	.	.	PASS	END=147230250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	147230251	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:36:60
chr1	147230252	.	T	.	.	PASS	END=147230257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr1	147230258	.	C	.	.	PASS	END=147230268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	147230269	.	G	.	.	PASS	END=147230272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	147230273	.	C	.	.	PASS	END=147230278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	147230279	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:75:60
chr1	147230280	.	A	.	.	PASS	END=147230290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	147230291	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:43:60
chr1	147230292	.	C	.	.	PASS	END=147230325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	147230326	.	T	.	.	PASS	END=147230349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	147230350	.	G	.	.	PASS	END=147230369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	147230370	.	C	.	.	PASS	END=147230399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	147230400	.	C	.	.	PASS	END=147230425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	147230426	.	A	.	.	PASS	END=147230473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	147230474	.	T	.	.	PASS	END=147230550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	147230551	.	C	.	.	PASS	END=147230575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	147230576	.	T	.	.	PASS	END=147230683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	147230684	.	A	.	.	PASS	END=147230713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	147230714	.	C	.	.	PASS	END=147230753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	147230754	.	A	.	.	PASS	END=147230797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	147230798	.	A	.	.	PASS	END=147230899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:260:99:60
chr1	147230900	.	C	.	.	PASS	END=147230991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:301:99:60
chr1	147230992	.	C	.	.	PASS	END=147231025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:60
chr1	147231026	.	C	.	.	PASS	END=147231049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	147231050	.	A	.	.	PASS	END=147231060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	147231061	.	C	.	.	PASS	END=147231188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	147231189	.	C	.	.	PASS	END=147231209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	147231210	.	C	.	.	PASS	END=147231220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	147231221	.	C	.	.	PASS	END=147231240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	147231241	.	C	.	.	PASS	END=147231260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	147231261	.	A	.	.	PASS	END=147231267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	147231268	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:57:60
chr1	147231269	.	G	.	.	PASS	END=147231271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	147231272	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:45:60
chr1	147231273	.	C	.	.	PASS	END=147231279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	147231280	.	T	.	.	PASS	END=147231291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	147231292	.	T	.	.	PASS	END=147231300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	147231301	.	T	.	.	PASS	END=147231303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	147231304	.	G	.	.	PASS	END=147231308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr1	147231309	.	T	.	.	PASS	END=147231313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	147231314	.	C	.	.	PASS	END=147231318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	147231319	.	A	.	.	PASS	END=147231320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	147231321	.	T	.	.	PASS	END=147231326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	147231327	.	A	.	.	PASS	END=147231329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	147231330	.	A	.	.	PASS	END=147231334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	147231335	.	C	.	.	PASS	END=147231338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	147231339	.	T	.	.	PASS	END=147231341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	147231342	.	C	.	.	PASS	END=147231348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	147231349	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	147231350	.	G	.	.	PASS	END=147231351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	147231352	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:6:60
chr1	147231353	.	A	.	.	PASS	END=147231360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	147231361	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chr1	147231362	.	G	.	.	PASS	END=147231365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	147231366	.	A	.	.	PASS	END=147231378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	147231379	.	T	.	.	PASS	END=147231385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	147231386	.	A	.	.	PASS	END=147231397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	147380032	.	T	.	.	PASS	END=147380043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	147380044	.	G	.	.	PASS	END=147380066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	147380067	.	T	.	.	PASS	END=147380121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	147380122	.	G	.	.	PASS	END=147380136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	147380137	.	A	.	.	PASS	END=147380182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	147380183	.	T	.	.	PASS	END=147380344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	147380345	.	C	.	.	PASS	END=147380438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	147380439	.	G	.	.	PASS	END=147380499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	147380500	.	A	.	.	PASS	END=147380678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:259:99:60
chr1	147380679	.	C	.	.	PASS	END=147380797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr1	147380798	.	C	.	.	PASS	END=147380885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:309:99:60
chr1	147380886	.	C	T	4424.29	PASS	BaseQRankSum=3.241;DP=383;Dels=0.00;FS=3.484;HRun=1;HaplotypeScore=33.2374;MQ=60;MQ0=0;MQRankSum=0.269;QD=11.55;ReadPosRankSum=-0.480;SB=-2308.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:188,195:383:99:4424,0,4459:60:99:0.509
chr1	147380887	.	C	.	.	PASS	END=147380945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:302:99:60
chr1	147380946	.	G	.	.	PASS	END=147380956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	147380957	.	T	.	.	PASS	END=147380986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	147380987	.	A	.	.	PASS	END=147381012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	147381013	.	G	.	.	PASS	END=147381038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	147381039	.	A	.	.	PASS	END=147381149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	147381150	.	G	.	.	PASS	END=147381184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	147381185	.	A	.	.	PASS	END=147381212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	147381213	.	G	.	.	PASS	END=147381304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr1	147381305	.	T	.	.	PASS	END=147381339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	147381340	.	A	.	.	PASS	END=147381356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	147381357	.	A	.	.	PASS	END=147381379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	147381380	.	T	.	.	PASS	END=147381396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	147381397	.	G	A	43.18	LowQD;SB	BaseQRankSum=0.559;DP=87;Dels=0.00;FS=58.747;HRun=13;HaplotypeScore=70.9546;MQ=60;MQ0=0;MQRankSum=0.685;QD=0.50;ReadPosRankSum=-1.613;SB=-2.75	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:50,9:87:73.17:73,0,1276:60:43:0.153
chr1	147381398	.	A	.	.	PASS	END=147381435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:59
chr1	147400621	.	G	.	.	LowGQX	END=147400720	GT	./.
chr1	147408721	.	C	.	.	LowGQX	END=147408820	GT	./.
chr1	147410775	.	G	.	5.78	LowGQX	DP=2;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:27:0
chr1	147410776	.	T	.	.	LowGQX	END=147410832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:27
chr1	147410833	.	T	.	.	LowGQX	.	GT	./.
chr1	147410834	.	C	.	.	LowGQX	END=147410850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	147410851	.	G	.	.	LowGQX	.	GT	./.
chr1	147410852	.	A	.	.	LowGQX	END=147410858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	147410859	.	C	.	.	LowGQX	END=147410933	GT	./.
chr1	147415550	.	A	.	.	LowGQX	END=147415660	GT	./.
chr1	147416048	.	A	.	.	LowGQX	END=147416218	GT	./.
chr1	147416219	.	A	.	.	LowGQX	END=147416243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	147416244	.	G	.	.	LowGQX	.	GT	./.
chr1	147416245	.	G	.	.	LowGQX	END=147416254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	147416255	.	T	.	.	LowGQX	.	GT	./.
chr1	147416256	.	T	.	.	LowGQX	END=147416257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	147416258	.	T	.	.	LowGQX	.	GT	./.
chr1	147416259	.	T	.	.	LowGQX	END=147416261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	147416262	.	A	.	.	LowGQX	.	GT	./.
chr1	147416263	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:48
chr1	147416264	.	T	.	.	LowGQX	.	GT	./.
chr1	147416265	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:48
chr1	147416266	.	T	.	.	LowGQX	.	GT	./.
chr1	147416267	.	C	.	.	LowGQX	END=147416268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	147425525	.	G	.	.	LowGQX	END=147425699	GT	./.
chr1	147426491	.	C	.	.	LowGQX	END=147426644	GT	./.
chr1	147438784	.	A	.	.	LowGQX	END=147438790	GT	./.
chr1	147438791	.	C	.	.	LowGQX;LowMQ	END=147438942	GT	./.
chr1	147441044	.	T	.	.	LowGQX	END=147441201	GT	./.
chr1	147442036	.	A	.	.	LowGQX	END=147442195	GT	./.
chr1	147458378	.	A	.	.	LowGQX	END=147458528	GT	./.
chr1	147460601	.	G	.	.	LowGQX;LowMQ	END=147460758	GT	./.
chr1	147464732	.	A	.	.	LowGQX	END=147464859	GT	./.
chr1	147464860	.	C	.	.	LowGQX;LowMQ	END=147465151	GT	./.
chr1	147575934	.	A	.	.	LowGQX;LowMQ	END=147576189	GT	./.
chr1	147576190	.	C	.	.	LowGQX	END=147576203	GT	./.
chr1	147576818	.	A	.	.	LowGQX;LowMQ	END=147576976	GT	./.
chr1	147577630	.	G	.	.	LowGQX;LowMQ	END=147577722	GT	./.
chr1	147577723	.	T	.	.	LowGQX	END=147577753	GT	./.
chr1	147577754	.	A	.	.	LowGQX;LowMQ	END=147577813	GT	./.
chr1	147578382	.	A	.	.	LowGQX;LowMQ	END=147578425	GT	./.
chr1	147578426	.	A	.	.	LowGQX	END=147578427	GT	./.
chr1	147578428	.	G	.	.	LowGQX	END=147578434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr1	147578435	.	C	.	.	LowGQX	.	GT	./.
chr1	147578436	.	A	.	.	LowGQX	END=147578444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr1	147578445	.	T	.	.	LowGQX	.	GT	./.
chr1	147578446	.	G	.	.	LowGQX	END=147578447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr1	147578448	.	T	.	.	LowGQX	.	GT	./.
chr1	147578449	.	C	.	.	LowGQX	END=147578450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr1	147578451	.	C	.	.	LowGQX	.	GT	./.
chr1	147578452	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:28
chr1	147578453	.	A	.	.	LowGQX	.	GT	./.
chr1	147578454	.	T	.	.	LowGQX	END=147578460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr1	147578461	.	G	.	.	LowGQX	.	GT	./.
chr1	147578462	.	T	.	.	LowGQX	END=147578464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr1	147578465	.	C	.	.	LowGQX	.	GT	./.
chr1	147578466	.	C	.	.	LowGQX	END=147578469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr1	147578470	.	G	.	.	LowGQX	END=147578472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	147578473	.	A	.	.	LowGQX	.	GT	./.
chr1	147578474	.	C	.	.	LowGQX	END=147578478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	147578479	.	G	.	.	LowGQX	.	GT	./.
chr1	147578480	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr1	147578481	.	C	.	.	LowGQX	.	GT	./.
chr1	147578482	.	C	.	.	LowGQX	END=147578484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	147578485	.	G	.	.	LowGQX	.	GT	./.
chr1	147578486	.	G	.	.	LowGQX	END=147578487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	147578488	.	C	.	.	LowGQX	.	GT	./.
chr1	147578489	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr1	147578490	.	T	.	.	LowGQX	.	GT	./.
chr1	147578491	.	C	.	.	LowGQX	END=147578503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	147578504	.	G	.	.	LowGQX	.	GT	./.
chr1	147578505	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr1	147578506	.	C	.	.	LowGQX	.	GT	./.
chr1	147578507	.	C	.	.	LowGQX	END=147578513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	147578514	.	A	.	.	LowGQX	.	GT	./.
chr1	147578515	.	T	.	.	LowGQX	END=147578517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	147578518	.	C	.	.	LowGQX	.	GT	./.
chr1	147578519	.	T	.	.	LowGQX	END=147578522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	147578523	.	A	.	.	LowGQX	.	GT	./.
chr1	147578524	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr1	147578525	.	A	.	.	LowGQX	END=147578526	GT	./.
chr1	147578527	.	A	.	.	LowGQX	END=147578532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	147578533	.	A	.	.	LowGQX	.	GT	./.
chr1	147578534	.	C	.	.	LowGQX	END=147578539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	147578540	.	C	.	.	LowGQX	.	GT	./.
chr1	147578541	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr1	147579214	.	G	.	.	LowGQX	END=147579307	GT	./.
chr1	147579308	.	G	.	.	LowGQX;LowMQ	END=147579401	GT	./.
chr1	147579912	.	A	.	.	LowGQX;LowMQ	END=147580071	GT	./.
chr1	147580765	.	A	.	.	LowGQX	END=147580784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:22
chr1	147580785	.	A	.	36.01	LowGQX	DP=4;MQ=22;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.01:22:6
chr1	147580786	.	G	.	39	LowGQX	DP=5;MQ=22;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.01:22:9
chr1	147580787	.	C	.	.	LowGQX	END=147580848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:20
chr1	147580849	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:3:20
chr1	147580850	.	C	.	.	LowGQX	END=147580868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:20
chr1	147580869	.	T	.	.	LowGQX;LowMQ	END=147580900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:16
chr1	147580901	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:7:3:16
chr1	147580902	.	C	.	.	LowGQX;LowMQ	END=147580923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:18
chr1	147580924	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:6:3:18
chr1	147580925	.	A	.	.	LowGQX;LowMQ	END=147580926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:18
chr1	147580927	.	C	.	.	LowGQX	END=147580932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:22
chr1	147580933	.	G	.	39.01	LowGQX	DP=4;MQ=22;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.02:22:9
chr1	147580934	.	C	.	.	LowGQX	END=147580944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:20
chr1	147580945	.	A	.	.	LowGQX	END=147580961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:20
chr1	147581487	.	A	.	.	LowGQX	END=147581508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:24
chr1	147581509	.	C	.	8.08	LowGQX	DP=2;MQ=24;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.02:24:0
chr1	147581510	.	C	.	.	LowGQX	END=147581646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:20
chr1	147582642	.	C	.	.	LowGQX;LowMQ	END=147582830	GT	./.
chr1	147586640	.	T	.	.	LowGQX;LowMQ	END=147586799	GT	./.
chr1	147588003	.	A	.	.	LowGQX;LowMQ	END=147588352	GT	./.
chr1	147588673	.	C	.	.	LowGQX;LowMQ	END=147588832	GT	./.
chr1	147589782	.	T	.	.	LowGQX;LowMQ	END=147590131	GT	./.
chr1	147590901	.	A	.	.	LowGQX;LowMQ	END=147591059	GT	./.
chr1	147592711	.	G	.	.	LowGQX;LowMQ	END=147593022	GT	./.
chr1	147593023	.	G	.	.	LowGQX	END=147593060	GT	./.
chr1	147594265	.	A	.	.	LowGQX;LowMQ	END=147594564	GT	./.
chr1	147594565	.	G	.	.	LowGQX;LowMQ	END=147594576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:15
chr1	147594577	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	147594578	.	A	.	.	LowGQX;LowMQ	END=147594587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:16
chr1	147594588	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	147594589	.	C	.	.	LowGQX;LowMQ	END=147594609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:16
chr1	147594610	.	G	.	33	LowGQX;LowMQ	DP=5;MQ=18;MQ0=4	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:18:3
chr1	147594611	.	G	.	.	LowGQX;LowMQ	END=147594614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:18
chr1	147594939	.	C	.	.	LowGQX;LowMQ	END=147594953	GT	./.
chr1	147594954	.	C	.	.	LowGQX	END=147594964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:23
chr1	147594965	.	T	.	33	LowGQX	DP=3;MQ=23;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:23:3
chr1	147594966	.	T	.	.	LowGQX	END=147594977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:20
chr1	147594978	.	C	.	.	LowGQX	.	GT	./.
chr1	147594979	.	A	.	.	LowGQX;LowMQ	END=147594986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:18
chr1	147594987	.	C	.	.	LowGQX	END=147594990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:20
chr1	147594991	.	C	.	.	LowGQX;LowMQ	END=147595004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:14
chr1	147595005	.	A	.	33	LowGQX;LowMQ	DP=8;MQ=14;MQ0=7	GT:AD:DP:GQ:MQ:GQX	0/0:2:8:3.01:14:3
chr1	147595006	.	T	.	.	LowGQX;LowMQ	END=147595025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:3:12
chr1	147595026	.	T	.	.	LowGQX;LowMQ	END=147595084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:3:11
chr1	147595085	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	147595086	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:14:3:11
chr1	147595087	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	147595088	.	T	.	.	LowGQX;LowMQ	END=147595098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:3:11
chr1	147596063	.	T	.	.	LowGQX;LowMQ	END=147596412	GT	./.
chr1	147597130	.	T	.	.	LowGQX	END=147597134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:38
chr1	147597135	.	A	.	33	LowGQX	DP=3;MQ=41;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:41:3
chr1	147597136	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:41
chr1	147597137	.	A	.	.	LowGQX	.	GT	./.
chr1	147597138	.	T	.	.	LowGQX	END=147597143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:31
chr1	147597144	.	C	.	.	LowGQX	END=147597149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:31
chr1	147597150	.	C	.	.	LowGQX	END=147597151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:33
chr1	147597152	.	T	.	45.03	LowGQX	DP=9;MQ=33;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:15.04:33:15
chr1	147597153	.	G	.	.	LowGQX	END=147597157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:33
chr1	147597158	.	T	.	45.03	LowGQX	DP=9;MQ=33;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:15.04:33:15
chr1	147597159	.	C	.	.	LowGQX	END=147597160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:33
chr1	147597161	.	C	.	.	LowGQX	END=147597165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:31
chr1	147597166	.	T	.	51.05	LowGQX	DP=12;MQ=31;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:9:12:21.06:31:21
chr1	147597167	.	A	.	.	LowGQX	END=147597170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:29
chr1	147597171	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:18:29
chr1	147597172	.	G	.	.	LowGQX	END=147597174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:26
chr1	147597175	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:15:26
chr1	147597176	.	C	.	.	LowGQX	END=147597183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:24:25
chr1	147597184	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:30:25
chr1	147597185	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:18:25
chr1	147597186	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:30:25
chr1	147597187	.	C	.	.	LowGQX	END=147597193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:21:24
chr1	147597194	.	G	.	.	PASS	END=147597204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:30:22
chr1	147597205	.	C	.	.	PASS	END=147597211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:36:20
chr1	147597212	.	G	.	.	LowMQ	END=147597284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:30:17
chr1	147599039	.	A	.	.	LowGQX	END=147599238	GT	./.
chr1	147599239	.	G	.	.	LowGQX;LowMQ	END=147599388	GT	./.
chr1	147607950	.	C	.	.	LowGQX	END=147608118	GT	./.
chr1	147954837	.	C	.	.	LowGQX;LowMQ	END=147955088	GT	./.
chr1	147955089	.	C	.	.	LowGQX;LowMQ	END=147955128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:0:3
chr1	147955129	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	147955130	.	C	.	.	LowGQX;LowMQ	END=147955143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:0:3
chr1	147955144	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	147955145	.	A	.	.	LowGQX;LowMQ	END=147955228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:3:3
chr1	147955229	.	A	.	.	LowGQX;LowMQ	END=147955245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:3:5
chr1	147955246	.	C	.	3.73	LowGQX;LowMQ	DP=28;MQ=5;MQ0=27	GT:AD:DP:GQ:MQ:GQX	0/0:21:28:0:5:0
chr1	147955247	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:28:3:5
chr1	147955248	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	147955249	.	T	.	.	LowGQX;LowMQ	END=147955255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:3:5
chr1	147955256	.	A	.	3.73	LowGQX;LowMQ	DP=27;MQ=5;MQ0=26	GT:AD:DP:GQ:MQ:GQX	0/0:20:27:0:5:0
chr1	147955257	.	G	.	.	LowGQX;LowMQ	END=147955271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:3:5
chr1	147955272	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	147955273	.	C	.	.	LowGQX;LowMQ	END=147955285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:3:5
chr1	147955286	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	147955287	.	T	.	.	LowGQX;LowMQ	END=147955292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:3:5
chr1	147955293	.	C	.	.	LowGQX;LowMQ	END=147955294	GT	./.
chr1	147955295	.	A	.	.	LowGQX;LowMQ	END=147955299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:3:5
chr1	147955300	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	147955301	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:16:3:6
chr1	147955302	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	147955303	.	G	.	.	LowGQX;LowMQ	END=147955309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:3:6
chr1	147955310	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	147955311	.	C	.	.	LowGQX;LowMQ	END=147955312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:6
chr1	147955313	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	147955314	.	T	.	.	LowGQX;LowMQ	END=147955317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:6
chr1	147955318	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	147955319	.	T	.	.	LowGQX;LowMQ	END=147955321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:6
chr1	147955322	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	147955323	.	A	.	.	LowGQX;LowMQ	END=147955327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:6
chr1	147955328	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	147955329	.	C	.	.	LowGQX;LowMQ	END=147955337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:3:6
chr1	147955338	.	T	.	.	LowGQX;LowMQ	END=147955346	GT	./.
chr1	148004546	.	G	.	.	LowGQX	END=148004622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:43
chr1	148004623	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:44
chr1	148004624	.	A	.	.	LowGQX	END=148004643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:44
chr1	148004644	.	A	G	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=45;MQ0=0;MQRankSum=-0.736;QD=1.05;ReadPosRankSum=-0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.29:30,0,70:45:3:0.333
chr1	148004645	.	T	.	.	LowGQX	END=148004648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:45
chr1	148004649	.	C	G	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=45;MQ0=0;MQRankSum=-0.736;QD=1.05;ReadPosRankSum=-0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.29:30,0,70:45:3:0.333
chr1	148004650	.	T	.	.	LowGQX	END=148004674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:45
chr1	148004675	.	C	.	.	LowGQX	END=148004688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	148004689	.	T	.	.	LowGQX	END=148004800	GT	./.
chr1	148005401	.	A	.	.	LowGQX;LowMQ	END=148005404	GT	./.
chr1	148005405	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:47:3:4
chr1	148005406	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148005407	.	G	.	.	LowGQX;LowMQ	END=148005408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:3:4
chr1	148005409	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148005410	.	A	.	.	LowGQX;LowMQ	END=148005412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:3:4
chr1	148005413	.	G	.	.	LowGQX;LowMQ	END=148005415	GT	./.
chr1	148005416	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:51:3:4
chr1	148005417	.	G	.	.	LowGQX;LowMQ	END=148005419	GT	./.
chr1	148005420	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:55:3:4
chr1	148005421	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148005422	.	G	.	.	LowGQX;LowMQ	END=148005428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:0:2
chr1	148005429	.	T	.	.	LowGQX;LowMQ	END=148005430	GT	./.
chr1	148005431	.	C	.	.	LowGQX;LowMQ	END=148005434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:3:2
chr1	148005435	.	T	.	.	LowGQX;LowMQ	END=148005436	GT	./.
chr1	148005437	.	C	.	.	LowGQX;LowMQ	END=148005439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:3:2
chr1	148005440	.	T	.	.	LowGQX;LowMQ	END=148005441	GT	./.
chr1	148005442	.	C	.	.	LowGQX;LowMQ	END=148005443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:3:2
chr1	148005444	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148005445	.	C	.	.	LowGQX;LowMQ	END=148005447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:3:2
chr1	148005448	.	C	.	.	LowGQX;LowMQ	END=148005449	GT	./.
chr1	148005450	.	T	.	.	LowGQX;LowMQ	END=148005451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:3:2
chr1	148005452	.	T	.	.	LowGQX;LowMQ	END=148005454	GT	./.
chr1	148005455	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:58:3:2
chr1	148005456	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148005457	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:58:3:2
chr1	148005458	.	C	.	32.95	LowGQX;LowMQ	DP=57;MQ=2;MQ0=56	GT:AD:DP:GQ:MQ:GQX	0/0:45:57:2.98:2:3
chr1	148005459	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148005460	.	T	.	.	LowGQX;LowMQ	END=148005463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:3:2
chr1	148005464	.	T	.	.	LowGQX;LowMQ	END=148005466	GT	./.
chr1	148005467	.	A	.	.	LowGQX;LowMQ	END=148005469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:3:2
chr1	148005470	.	T	.	.	LowGQX;LowMQ	END=148005471	GT	./.
chr1	148005472	.	C	.	.	LowGQX;LowMQ	END=148005478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:3:3
chr1	148005479	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148005480	.	T	.	.	LowGQX;LowMQ	END=148005492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:3:3
chr1	148005493	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148005494	.	T	.	.	LowGQX;LowMQ	END=148005512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:3:3
chr1	148005513	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148005514	.	G	.	.	LowGQX;LowMQ	END=148005539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:3:4
chr1	148005540	.	C	.	.	LowGQX;LowMQ	END=148005559	GT	./.
chr1	148006213	.	G	.	.	LowGQX;LowMQ	END=148006400	GT	./.
chr1	148006955	.	A	.	.	LowGQX;LowMQ	END=148007114	GT	./.
chr1	148007787	.	G	.	.	LowGQX;LowMQ	END=148007911	GT	./.
chr1	148007912	.	T	.	.	LowGQX	END=148007942	GT	./.
chr1	148007943	.	T	.	.	LowGQX;LowMQ	END=148007974	GT	./.
chr1	148008549	.	G	.	.	LowGQX	END=148008555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:23
chr1	148008556	.	T	.	33	LowGQX	DP=5;MQ=23;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:23:3
chr1	148008557	.	A	.	.	LowGQX	END=148008561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:23
chr1	148008562	.	C	.	33	LowGQX	DP=5;MQ=23;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:23:3
chr1	148008563	.	T	.	.	LowGQX	END=148008567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:23
chr1	148008568	.	G	.	33	LowGQX	DP=5;MQ=23;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:23:3
chr1	148008569	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:3:23
chr1	148008570	.	T	.	33	LowGQX	DP=5;MQ=23;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:23:3
chr1	148008571	.	A	.	.	LowGQX	END=148008572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:23
chr1	148008573	.	C	.	33	LowGQX	DP=5;MQ=23;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:23:3
chr1	148008574	.	T	.	.	LowGQX	END=148008581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:23
chr1	148008582	.	G	.	.	LowGQX	.	GT	./.
chr1	148008583	.	A	.	.	LowGQX	END=148008585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:23
chr1	148008586	.	G	.	33	LowGQX	DP=5;MQ=23;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:23:3
chr1	148008587	.	G	.	33	LowGQX	DP=5;MQ=23;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:23:3
chr1	148008588	.	T	.	.	LowGQX	END=148008608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:23
chr1	148008609	.	T	.	33	LowGQX	DP=5;MQ=23;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:23:3
chr1	148008610	.	G	.	.	LowGQX	END=148008618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:23
chr1	148008619	.	C	.	.	LowGQX	.	GT	./.
chr1	148008620	.	A	.	.	LowGQX	END=148008648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:23
chr1	148009326	.	T	.	.	LowGQX	END=148009338	GT	./.
chr1	148009339	.	C	.	.	LowGQX	END=148009374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	148009375	.	T	.	.	LowGQX	.	GT	./.
chr1	148009376	.	T	.	.	LowGQX	END=148009403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	148009404	.	A	.	.	LowGQX	.	GT	./.
chr1	148009405	.	G	.	.	LowGQX	END=148009445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	148009446	.	T	.	.	LowGQX	.	GT	./.
chr1	148009447	.	T	.	.	LowGQX	END=148009466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	148009467	.	A	.	.	LowGQX	.	GT	./.
chr1	148009468	.	C	.	.	LowGQX	END=148009469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	148009470	.	C	.	.	LowGQX	.	GT	./.
chr1	148009471	.	C	.	.	LowGQX	END=148009483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	148009484	.	G	.	.	LowGQX	END=148009485	GT	./.
chr1	148009486	.	C	.	.	LowGQX	END=148009488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	148009489	.	T	.	.	LowGQX	.	GT	./.
chr1	148009490	.	T	.	.	LowGQX	END=148009503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	148009504	.	C	.	.	LowGQX	.	GT	./.
chr1	148009505	.	T	.	.	LowGQX	END=148009511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	148009512	.	T	.	.	LowGQX	.	GT	./.
chr1	148009513	.	G	.	.	LowGQX	END=148009518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	148010089	.	G	.	.	LowGQX	END=148010090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:9:26
chr1	148010091	.	A	.	.	LowGQX	END=148010105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:9:21
chr1	148010106	.	A	.	.	LowGQX	END=148010114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:12:20
chr1	148010115	.	G	.	.	LowGQX;LowMQ	END=148010173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:6:13
chr1	148010174	.	G	.	.	LowGQX;LowMQ	END=148010182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:9:13
chr1	148010183	.	T	.	.	LowGQX;LowMQ	END=148010188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:3:6
chr1	148010882	.	A	.	.	PASS	END=148010904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:72:28
chr1	148010905	.	C	.	.	PASS	END=148010910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:93:30
chr1	148010911	.	G	A	1031.38	LowGQ	BaseQRankSum=1.253;DP=82;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=9.6003;MQ=31;MQ0=12;MQRankSum=-0.294;QD=12.58;ReadPosRankSum=0.411;SB=-656.60	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:8,74:82:29.63:1061,0,30:31:30:0.902
chr1	148010912	.	C	.	.	PASS	END=148010941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:96:32
chr1	148010942	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:78:63:32
chr1	148010943	.	T	.	.	PASS	END=148010983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:93:32
chr1	148010984	.	A	.	.	PASS	END=148011008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:81:33
chr1	148011009	.	T	.	.	PASS	END=148011031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:72:32
chr1	148011032	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:43:27:32
chr1	148011033	.	T	.	.	PASS	END=148011050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:32
chr1	148011051	.	C	.	.	PASS	END=148011053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:30
chr1	148011054	.	A	.	.	PASS	END=148011056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:33:28
chr1	148011057	.	C	.	.	LowGQX	END=148011058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:18:23
chr1	148011678	.	A	.	.	PASS	END=148011708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:30
chr1	148011709	.	C	.	.	PASS	END=148011722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:30:27
chr1	148011723	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:27:27
chr1	148011724	.	C	.	.	PASS	END=148011731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:30:26
chr1	148011732	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:27:26
chr1	148011733	.	T	.	.	PASS	END=148011734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:33:26
chr1	148011735	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:18:26
chr1	148011736	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:27:26
chr1	148011737	.	T	.	.	PASS	END=148011738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:33:26
chr1	148011739	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:27:26
chr1	148011740	.	T	.	.	PASS	END=148011745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:30:26
chr1	148011746	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:27:25
chr1	148011747	.	T	.	.	PASS	END=148011748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:30:25
chr1	148011749	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:0:25
chr1	148011750	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:27:25
chr1	148011751	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:30:25
chr1	148011752	.	C	.	.	LowGQX	END=148011753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:27:25
chr1	148011754	.	C	.	.	PASS	END=148011755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:30:25
chr1	148011756	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:27:24
chr1	148011757	.	T	.	.	PASS	END=148011758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:33:24
chr1	148011759	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:24:24
chr1	148011760	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:36:24
chr1	148011761	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:27:24
chr1	148011762	.	T	.	.	PASS	END=148011769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:30:24
chr1	148011770	.	T	.	.	LowGQX	END=148011771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:27:24
chr1	148011772	.	C	.	.	PASS	END=148011779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:30:24
chr1	148011780	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:5:24
chr1	148011781	.	T	.	.	PASS	END=148011804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:30:22
chr1	148011805	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:2:22
chr1	148011806	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:33:21
chr1	148011807	.	T	.	.	LowGQX	END=148011808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:24:21
chr1	148011809	.	G	.	.	PASS	END=148011811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:30:21
chr1	148011812	.	A	.	.	LowGQX	END=148011814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:24:20
chr1	148011815	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:30:20
chr1	148011816	.	A	.	.	LowGQX;LowMQ	END=148011817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:24:17
chr1	148011818	.	A	.	.	LowGQX;LowMQ	END=148011821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:18:17
chr1	148011822	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:21:15:17
chr1	148011823	.	G	.	.	LowGQX;LowMQ	END=148011824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:21:17
chr1	148011825	.	T	.	.	LowGQX;LowMQ	END=148011830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:15:15
chr1	148011831	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:20:9:15
chr1	148011832	.	C	.	.	LowGQX;LowMQ	END=148011836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:15:15
chr1	148012490	.	G	.	.	LowGQX	END=148012558	GT	./.
chr1	148012559	.	C	.	.	LowGQX;LowMQ	END=148012677	GT	./.
chr1	148013236	.	A	.	.	LowGQX	END=148013395	GT	./.
chr1	148014068	.	G	.	.	LowGQX;LowMQ	END=148014255	GT	./.
chr1	148014770	.	A	.	.	LowGQX;LowMQ	END=148014793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:9:15
chr1	148014794	.	T	.	.	LowGQX;LowMQ	END=148014813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:3:11
chr1	148014814	.	G	A	5.00	LowGQ;LowGQX;LowMQ;LowQD;SB	BaseQRankSum=0.804;DP=16;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=11;MQ0=14;MQRankSum=0.804;QD=0.31;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:14,1:16:18.68:33,0,19:11:5:0.067
chr1	148014815	.	T	.	.	LowGQX;LowMQ	END=148014834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:6:10
chr1	148014835	.	C	.	.	LowGQX;LowMQ	END=148014842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:6:9
chr1	148014843	.	C	.	.	LowGQX;LowMQ	END=148014876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:3:4
chr1	148014877	.	T	.	.	LowGQX;LowMQ	END=148014929	GT	./.
chr1	148015623	.	A	.	.	LowGQX	END=148015686	GT	./.
chr1	148015687	.	G	.	.	LowGQX;LowMQ	END=148015715	GT	./.
chr1	148015716	.	A	.	.	LowGQX;LowMQ	END=148015751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:18
chr1	148015752	.	C	.	.	LowGQX	END=148015787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:23
chr1	148015788	.	T	.	.	LowGQX	END=148015821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:40
chr1	148016385	.	C	.	.	LowGQX	END=148016445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:39
chr1	148016446	.	G	.	.	LowGQX	END=148016452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:39
chr1	148016453	.	C	.	36.01	LowGQX	DP=4;MQ=39;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:39:6
chr1	148016454	.	C	.	.	LowGQX	END=148016475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:35
chr1	148016476	.	G	.	39.01	LowGQX	DP=5;MQ=35;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.02:35:9
chr1	148016477	.	A	.	.	LowGQX	END=148016484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:32
chr1	148017479	.	C	.	.	LowGQX	END=148017480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:28
chr1	148017481	.	C	.	.	PASS	END=148017482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:31
chr1	148017483	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:31
chr1	148017484	.	T	.	.	PASS	END=148017485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:32
chr1	148017486	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:32
chr1	148017487	.	C	.	.	PASS	END=148017494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:31
chr1	148017495	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:33
chr1	148017496	.	A	.	.	PASS	END=148017503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:33
chr1	148017504	.	C	.	.	PASS	END=148017521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:35
chr1	148017522	.	C	.	.	PASS	END=148017525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:54:37
chr1	148017526	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:15:37
chr1	148017527	.	T	.	.	PASS	END=148017552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:51:36
chr1	148017553	.	T	.	.	PASS	END=148017577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:60:37
chr1	148017578	.	C	T	218.35	PASS	BaseQRankSum=1.991;DP=41;Dels=0.00;FS=3.164;HRun=0;HaplotypeScore=2.8408;MQ=40;MQ0=0;MQRankSum=1.017;QD=5.33;ReadPosRankSum=-0.616;SB=-126.82	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:29,12:41:99:248,0,514:40:99:0.293
chr1	148017579	.	A	.	.	PASS	END=148017628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:63:40
chr1	148017629	.	C	T	59.84	LowQD	BaseQRankSum=2.937;DP=38;Dels=0.00;FS=1.695;HRun=1;HaplotypeScore=1.8938;MQ=42;MQ0=0;MQRankSum=-0.301;QD=1.57;ReadPosRankSum=0.414;SB=-76.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:31,7:38:89.83:90,0,628:42:60:0.184
chr1	148017630	.	T	.	.	PASS	END=148017649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:42
chr1	148017650	.	A	.	.	PASS	END=148017661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:43
chr1	148017662	.	A	.	.	PASS	END=148017667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:44
chr1	148021493	.	T	.	.	PASS	END=148021524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:25
chr1	148021525	.	C	.	.	PASS	END=148021555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:27
chr1	148021556	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:99:30
chr1	148021557	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:31
chr1	148021558	.	A	.	.	PASS	END=148021569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:31
chr1	148021570	.	A	.	.	PASS	END=148021614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:33
chr1	148021615	.	A	.	.	PASS	END=148021652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:33
chr1	148022854	.	A	.	.	LowGQX	END=148022910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr1	148022911	.	G	.	.	LowGQX	END=148022930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:38
chr1	148022931	.	A	G	8.10	LowGQX;LowQD;SB	BaseQRankSum=1.026;DP=5;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=38;MQ0=1;MQRankSum=-1.026;QD=1.62;ReadPosRankSum=-1.026;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,3:5:37.36:37,0,67:38:8:0.600
chr1	148022932	.	A	.	.	LowGQX	END=148022933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:38
chr1	148022934	.	A	.	.	LowGQX	END=148022938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:32
chr1	148022939	.	G	.	.	LowGQX	END=148022945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:29
chr1	148022946	.	A	.	.	PASS	END=148022951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:29
chr1	148022952	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:26
chr1	148022953	.	C	.	.	PASS	END=148022957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:26
chr1	148022958	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:26
chr1	148022959	.	A	.	.	PASS	END=148022965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:26
chr1	148022966	.	A	G	39.28	SB	BaseQRankSum=0.740;DP=16;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.9469;MQ=27;MQ0=4;MQRankSum=1.109;QD=2.45;ReadPosRankSum=-0.185;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,3:16:69.27:69,0,221:27:39:0.188
chr1	148022967	.	G	.	.	PASS	END=148022972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:27
chr1	148022973	.	G	.	.	PASS	END=148022989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:28
chr1	148022990	.	C	.	.	PASS	END=148023036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:28
chr1	148023037	.	T	.	.	PASS	END=148023039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:48:28
chr1	148023040	.	G	C	147.35	PASS	BaseQRankSum=1.039;DP=29;Dels=0.00;FS=4.876;HRun=0;HaplotypeScore=2.8408;MQ=28;MQ0=6;MQRankSum=1.291;QD=5.08;ReadPosRankSum=0.472;SB=-90.29	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:20,9:29:99:177,0,320:28:99:0.310
chr1	148023041	.	A	.	.	PASS	END=148023065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:45:27
chr1	148023066	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:39:27
chr1	148023067	.	C	.	.	PASS	END=148023077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:42:27
chr1	148023078	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:39:29
chr1	148023079	.	C	.	.	PASS	END=148023091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:28
chr1	148023092	.	A	.	.	PASS	END=148023102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:29
chr1	148023103	.	A	.	.	PASS	END=148023125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:27
chr1	148023126	.	C	.	.	PASS	END=148023128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:26
chr1	148023129	.	C	.	7.52	LowGQX	DP=17;MQ=26;MQ0=6	GT:AD:DP:GQ:MQ:GQX	0/0:13:17:0.02:26:0
chr1	148023130	.	T	.	.	PASS	END=148023131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:26
chr1	148023132	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:26
chr1	148023133	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:26
chr1	148023134	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:26
chr1	148023135	.	G	.	.	PASS	END=148023138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:25
chr1	148023139	.	A	.	.	LowGQX	END=148023140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:27:23
chr1	148023141	.	C	.	.	PASS	END=148023145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:23
chr1	148023146	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:24:23
chr1	148023147	.	G	.	.	PASS	END=148023156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:23
chr1	148023157	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:21
chr1	148023158	.	G	.	.	PASS	END=148023161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:21
chr1	148023162	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:21
chr1	148023163	.	A	.	.	PASS	END=148023165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:21
chr1	148023166	.	A	.	.	LowGQX	END=148023187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:21
chr1	148023188	.	C	.	.	LowGQX	END=148023191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:22
chr1	148023192	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:0:22
chr1	148023193	.	G	.	.	LowGQX	END=148023202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:22
chr1	148023203	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:23
chr1	148023524	.	C	.	.	LowGQX	END=148023540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:15:22
chr1	148023541	.	C	.	.	LowGQX;LowMQ	END=148023550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:12:15
chr1	148023551	.	C	.	.	LowGQX;LowMQ	END=148023558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:9:13
chr1	148023559	.	T	.	.	LowGQX;LowMQ	END=148023598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:6:8
chr1	148023599	.	G	.	.	LowGQX;LowMQ	END=148023605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:9:9
chr1	148023606	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:45:6:9
chr1	148023607	.	A	.	.	LowGQX;LowMQ	END=148023608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:9:9
chr1	148023609	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:45:6:9
chr1	148023610	.	A	.	.	LowGQX;LowMQ	END=148023611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:9:9
chr1	148023612	.	T	.	.	LowGQX;LowMQ	END=148023683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:6:8
chr1	148024638	.	T	.	.	LowGQX	END=148024640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:29
chr1	148024641	.	G	.	36.01	LowGQX	DP=5;MQ=29;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.01:29:6
chr1	148024642	.	A	.	.	LowGQX	END=148024663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:26
chr1	148024664	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:9:30
chr1	148024665	.	T	.	.	LowGQX	END=148024669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:28
chr1	148024670	.	A	.	.	LowGQX	END=148024691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:25
chr1	148024692	.	G	.	.	LowGQX	END=148024693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:25
chr1	148024694	.	G	.	.	LowGQX	END=148024707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:6:20
chr1	148024708	.	T	.	.	LowGQX;LowMQ	END=148024732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:6:16
chr1	148024733	.	G	.	.	LowGQX;LowMQ	END=148024735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:12:19
chr1	148024736	.	C	.	.	LowGQX	END=148024742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:9:20
chr1	148024743	.	A	.	.	LowGQX	END=148024745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:12:20
chr1	148024746	.	C	.	.	LowGQX;LowMQ	END=148024752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:12:19
chr1	148024753	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:16:9:19
chr1	148024754	.	C	.	.	LowGQX;LowMQ	END=148024756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:15:19
chr1	148024757	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:16:9:19
chr1	148024758	.	G	.	.	LowGQX;LowMQ	END=148024765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:15:19
chr1	148024766	.	T	.	.	LowGQX	END=148024783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:12:20
chr1	148024784	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:9:21
chr1	148024785	.	T	.	.	LowGQX	END=148024787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:12:21
chr1	148024788	.	G	.	.	LowGQX	END=148024799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:18:21
chr1	148024800	.	T	.	.	LowGQX	END=148024805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:15:21
chr1	148024806	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:12:21
chr1	148024807	.	G	.	.	LowGQX	END=148024814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:15:21
chr1	148024815	.	A	.	.	LowGQX;LowMQ	END=148024818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:15:19
chr1	148024819	.	C	.	.	LowGQX;LowMQ	END=148024820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:9:19
chr1	148024821	.	T	.	.	LowGQX	END=148024822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:15:21
chr1	148024823	.	G	.	.	LowGQX	END=148024826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:18:21
chr1	148024827	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:12:22
chr1	148024828	.	G	.	.	LowGQX	END=148024829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:21:22
chr1	148024830	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:15:22
chr1	148024831	.	C	.	.	LowGQX	END=148024832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:21:22
chr1	148024833	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:15:22
chr1	148024834	.	T	.	.	LowGQX	END=148024840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:18:22
chr1	148024841	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:15:22
chr1	148024842	.	C	.	45.04	LowGQX	DP=22;MQ=22;MQ0=13	GT:AD:DP:GQ:MQ:GQX	0/0:11:22:15.04:22:15
chr1	148024843	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:12:22
chr1	148024844	.	G	.	.	LowGQX	END=148024847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:21:22
chr1	148024848	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:1:22
chr1	148024849	.	C	.	.	LowGQX	END=148024856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:18:22
chr1	148024857	.	C	.	.	LowGQX	END=148024860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:15:23
chr1	148024861	.	C	.	.	LowGQX	END=148024866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:18:24
chr1	148024867	.	A	.	.	LowGQX	END=148024868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:15:25
chr1	148024869	.	T	.	.	LowGQX	END=148024878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:18:25
chr1	148024879	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:15:25
chr1	148024880	.	C	.	.	LowGQX	END=148024883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:18:25
chr1	148024884	.	G	.	.	LowGQX	END=148024885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:12:24
chr1	148024886	.	C	.	.	LowGQX	END=148024899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:15:24
chr1	148024900	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:12:25
chr1	148024901	.	A	.	.	LowGQX	END=148024902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:18:25
chr1	148024903	.	C	.	45.04	LowGQX	DP=14;MQ=25;MQ0=7	GT:AD:DP:GQ:MQ:GQX	0/0:8:14:15.05:25:15
chr1	148024904	.	G	.	.	LowGQX	END=148024915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:15:25
chr1	148024916	.	T	.	.	LowGQX	END=148024921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:12:25
chr1	148024922	.	T	.	.	LowGQX	END=148024923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:9:25
chr1	148024924	.	G	.	.	LowGQX	END=148024926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:12:24
chr1	148024927	.	T	.	.	LowGQX	END=148024932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:9:24
chr1	148024933	.	G	.	.	LowGQX	END=148024937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:31
chr1	148024938	.	G	.	.	LowGQX	END=148024963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr1	148024964	.	A	G	37.70	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=35;MQ0=0;QD=18.85;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:69,6,0:35:6:1.000
chr1	148024965	.	G	.	.	LowGQX	END=148024971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:35
chr1	148024972	.	G	.	.	LowGQX	END=148024975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	148024976	.	C	.	.	LowGQX	.	GT	./.
chr1	148024977	.	G	.	.	LowGQX	END=148024981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	148024982	.	A	.	.	LowGQX	.	GT	./.
chr1	148024983	.	A	.	.	LowGQX	END=148024987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	148025759	.	A	.	.	PASS	END=148025762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:33:37
chr1	148025763	.	G	A	22.56	LowGQX;LowQD	BaseQRankSum=1.453;DP=26;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=7.5754;MQ=37;MQ0=3;MQRankSum=-2.646;QD=0.87;ReadPosRankSum=0.335;SB=-24.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:20,6:26:52.53:53,0,361:37:23:0.231
chr1	148025764	.	A	.	.	PASS	END=148025777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:36:37
chr1	148025778	.	C	.	.	PASS	END=148025785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:39:39
chr1	148025786	.	G	.	.	PASS	END=148025796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:48:43
chr1	148025797	.	T	.	29.80	LowGQX	DP=35;MQ=43;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:27:35:2.91:43:3
chr1	148025798	.	T	.	.	PASS	END=148025843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:45:42
chr1	148025844	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:33:2:43
chr1	148025845	.	T	.	.	PASS	END=148025853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:48:43
chr1	148025854	.	T	.	.	PASS	END=148025863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:39:44
chr1	148201966	.	A	.	.	LowGQX;LowMQ	END=148202464	GT	./.
chr1	148251874	.	T	.	36.01	LowGQX	DP=4;MQ=52;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:52:6
chr1	148251875	.	T	.	.	LowGQX	END=148251925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:45
chr1	148251926	.	C	A	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=47;MQ0=1;MQRankSum=0.736;QD=0.79;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,1:4:30.29:30,0,66:47:3:0.250
chr1	148251927	.	G	.	.	LowGQX	END=148251934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:47
chr1	148251935	.	A	T	85.91	LowGQ;LowGQX	DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=47;MQ0=1;QD=21.48;SB=-38.53	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,3:4:9.03:118,9,0:47:9:0.750
chr1	148251936	.	A	.	.	LowGQX	END=148251968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:47
chr1	148251969	.	A	.	36.01	LowGQX	DP=4;MQ=47;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:47:6
chr1	148251970	.	T	.	.	LowGQX	END=148251981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:42
chr1	148251982	.	C	A	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.804;DP=3;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=42;MQ0=1;MQRankSum=0.804;QD=1.66;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.11:33,0,30:42:5:0.333
chr1	148251983	.	A	.	.	LowGQX	END=148252029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr1	148252030	.	C	.	.	LowGQX	END=148252035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:42
chr1	148252036	.	A	.	.	LowGQX	END=148252039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	148252040	.	T	.	.	LowGQX	.	GT	./.
chr1	148252041	.	G	.	.	LowGQX	END=148252042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	148252043	.	C	.	.	LowGQX	.	GT	./.
chr1	148252044	.	G	.	.	LowGQX	END=148252047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	148252048	.	T	.	.	LowGQX	.	GT	./.
chr1	148252049	.	A	.	.	LowGQX	END=148252052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	148252053	.	T	.	.	LowGQX	.	GT	./.
chr1	148252054	.	A	.	.	LowGQX	END=148252070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	148252071	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	148252072	.	C	.	.	LowGQX	END=148252118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	148252674	.	T	.	.	LowGQX	END=148252692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:15:24
chr1	148252693	.	A	.	.	LowGQX	END=148252697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:18:23
chr1	148252698	.	A	.	.	LowGQX	END=148252706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:12:20
chr1	148252707	.	C	.	.	LowGQX	END=148252712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:18:22
chr1	148252713	.	C	.	.	LowGQX	END=148252721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:21:23
chr1	148252722	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:0:23
chr1	148252723	.	A	.	.	LowGQX	END=148252732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:21:21
chr1	148252733	.	G	.	.	LowGQX	END=148252736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:18:21
chr1	148252737	.	A	.	.	LowGQX	END=148252741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:15:20
chr1	148252742	.	G	.	.	LowGQX	END=148252749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:21:20
chr1	148252750	.	A	.	.	LowGQX	END=148252754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:18:20
chr1	148252755	.	C	.	.	LowGQX	END=148252758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:21:20
chr1	148252759	.	C	.	.	LowGQX	END=148252760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:15:20
chr1	148252761	.	C	.	.	LowGQX	END=148252767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:18:20
chr1	148252768	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:45:24:19
chr1	148252769	.	C	.	.	LowGQX;LowMQ	END=148252770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:15:19
chr1	148252771	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:45:21:19
chr1	148252772	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:45:9:19
chr1	148252773	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:45:18:19
chr1	148252774	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:45:12:19
chr1	148252775	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:45:21:19
chr1	148252776	.	T	.	.	LowGQX	END=148252778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:15:20
chr1	148252779	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:42:9:20
chr1	148252780	.	T	.	.	LowGQX	END=148252781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:15:20
chr1	148252782	.	T	.	.	LowGQX	END=148252783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:12:20
chr1	148252784	.	T	.	.	LowGQX	END=148252785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:18:20
chr1	148252786	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:38:0:20
chr1	148252787	.	T	.	.	LowGQX	END=148252789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:12:20
chr1	148252790	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:39:18:19
chr1	148252791	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:39:12:19
chr1	148252792	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:39:18:19
chr1	148252793	.	G	.	.	LowGQX	END=148252796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:12:20
chr1	148252797	.	T	.	.	LowGQX	END=148252804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:18:21
chr1	148252805	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:37:15:22
chr1	148252806	.	T	.	.	LowGQX	END=148252807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:18:22
chr1	148252808	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:37:12:22
chr1	148252809	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:37:0:22
chr1	148252810	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:37:21:22
chr1	148252811	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:37:0:22
chr1	148252812	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:37:21:22
chr1	148252813	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:37:15:22
chr1	148252814	.	T	.	.	LowGQX	END=148252816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:18:21
chr1	148252817	.	C	.	.	LowGQX	END=148252821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:12:20
chr1	148252822	.	C	.	.	LowGQX	END=148252826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:9:20
chr1	148252827	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:35:18:20
chr1	148252828	.	C	.	.	LowGQX	END=148252829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:9:20
chr1	148252830	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:35:6:20
chr1	148252831	.	T	.	.	LowGQX	END=148252832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:18:21
chr1	148252833	.	C	.	.	LowGQX	END=148252836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:9:21
chr1	148252837	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:35:15:21
chr1	148252838	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:35:21:21
chr1	148253552	.	C	.	.	LowGQX;LowMQ	END=148253750	GT	./.
chr1	148254296	.	A	.	.	LowGQX	END=148254455	GT	./.
chr1	148255140	.	C	.	.	LowGQX;LowMQ	END=148255338	GT	./.
chr1	148255838	.	A	.	.	LowGQX;LowMQ	END=148255997	GT	./.
chr1	148256665	.	C	.	.	LowGQX;LowMQ	END=148256865	GT	./.
chr1	148257442	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148257443	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:2:3:13
chr1	148257444	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148257445	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:2:3:13
chr1	148257446	.	C	.	.	LowGQX;LowMQ	END=148257447	GT	./.
chr1	148257448	.	C	.	.	LowGQX;LowMQ	END=148257450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:13
chr1	148257451	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148257452	.	G	.	.	LowGQX;LowMQ	END=148257462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:13
chr1	148257463	.	G	.	.	LowGQX;LowMQ	END=148257467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:7
chr1	148257468	.	A	.	.	LowGQX;LowMQ	END=148257470	GT	./.
chr1	148257471	.	C	.	.	LowGQX;LowMQ	END=148257473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:3:7
chr1	148257474	.	C	.	.	LowGQX;LowMQ	END=148257475	GT	./.
chr1	148257476	.	A	.	.	LowGQX;LowMQ	END=148257479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:3:6
chr1	148257480	.	T	.	.	LowGQX;LowMQ	END=148257482	GT	./.
chr1	148257483	.	C	.	.	LowGQX;LowMQ	END=148257485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:3:6
chr1	148257486	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148257487	.	A	.	.	LowGQX;LowMQ	END=148257494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:3:6
chr1	148257495	.	T	.	.	LowGQX;LowMQ	END=148257498	GT	./.
chr1	148257499	.	G	.	.	LowGQX;LowMQ	END=148257500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:3:5
chr1	148257501	.	A	.	.	LowGQX;LowMQ	END=148257503	GT	./.
chr1	148257504	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:12:3:5
chr1	148257505	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148257506	.	G	.	.	LowGQX;LowMQ	END=148257527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:3:5
chr1	148257528	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:17:3:4
chr1	148257529	.	T	.	.	LowGQX;LowMQ	END=148257530	GT	./.
chr1	148257531	.	T	.	.	LowGQX;LowMQ	END=148257539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:3:4
chr1	148257540	.	T	.	.	LowGQX;LowMQ	END=148257602	GT	./.
chr1	148258316	.	C	.	.	LowGQX;LowMQ	END=148258514	GT	./.
chr1	148259060	.	A	.	.	LowGQX	END=148259219	GT	./.
chr1	148259904	.	C	.	.	LowGQX;LowMQ	END=148260102	GT	./.
chr1	148260602	.	A	.	.	LowGQX;LowMQ	END=148260761	GT	./.
chr1	148261456	.	C	.	.	LowGQX;LowMQ	END=148261654	GT	./.
chr1	148262257	.	C	.	.	LowGQX	END=148262277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:24:26
chr1	148262278	.	A	.	.	LowGQX	END=148262300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:21:23
chr1	148262301	.	C	.	.	LowGQX	END=148262303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:18:23
chr1	148262304	.	T	.	.	LowGQX	END=148262308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:21:23
chr1	148262309	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:50:18:23
chr1	148262310	.	T	.	.	LowGQX	END=148262312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:24:22
chr1	148262313	.	C	.	.	LowGQX	END=148262314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:15:22
chr1	148262315	.	T	.	.	LowGQX	END=148262323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:21:21
chr1	148262324	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:49:18:21
chr1	148262325	.	T	.	.	LowGQX	END=148262327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:21:22
chr1	148262328	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:47:18:22
chr1	148262329	.	T	.	.	LowGQX	END=148262330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:21:21
chr1	148262331	.	C	.	.	LowGQX	END=148262333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:18:20
chr1	148262334	.	T	.	.	LowGQX	END=148262341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:21:21
chr1	148262342	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:49:18:21
chr1	148262343	.	T	.	.	LowGQX	END=148262344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:24:20
chr1	148262345	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:50:15:20
chr1	148262346	.	C	.	.	LowGQX	END=148262360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:21:20
chr1	148262361	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:47:18:20
chr1	148262362	.	A	.	.	LowGQX	END=148262363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:24:20
chr1	148262364	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:45:21:19
chr1	148262365	.	T	.	.	LowGQX	END=148262366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:21:20
chr1	148263059	.	A	.	.	LowGQX;LowMQ	END=148263253	GT	./.
chr1	148263820	.	A	.	.	LowGQX;LowMQ	END=148263979	GT	./.
chr1	148264664	.	C	.	.	LowGQX;LowMQ	END=148264837	GT	./.
chr1	148264838	.	C	.	.	LowGQX	END=148264862	GT	./.
chr1	148265362	.	A	.	.	LowGQX;LowMQ	END=148265521	GT	./.
chr1	148266189	.	C	.	.	LowGQX;LowMQ	END=148266389	GT	./.
chr1	148266966	.	T	.	.	LowGQX;LowMQ	END=148267126	GT	./.
chr1	148267840	.	C	.	.	LowGQX;LowMQ	END=148268038	GT	./.
chr1	148268592	.	A	.	.	LowGQX	END=148268751	GT	./.
chr1	148269436	.	C	.	.	LowGQX;LowMQ	END=148269634	GT	./.
chr1	148270134	.	A	.	.	LowGQX;LowMQ	END=148270293	GT	./.
chr1	148270961	.	C	.	.	LowGQX;LowMQ	END=148271161	GT	./.
chr1	148271740	.	T	.	.	LowGQX;LowMQ	END=148271900	GT	./.
chr1	148272614	.	C	.	.	LowGQX;LowMQ	END=148272812	GT	./.
chr1	148273364	.	A	.	.	LowGQX	END=148273391	GT	./.
chr1	148273392	.	A	.	.	LowGQX;LowMQ	END=148273441	GT	./.
chr1	148273442	.	A	.	.	LowGQX	END=148273523	GT	./.
chr1	148274208	.	C	.	.	LowGQX;LowMQ	END=148274406	GT	./.
chr1	148274898	.	A	.	.	LowGQX;LowMQ	END=148275057	GT	./.
chr1	148275752	.	C	.	.	LowGQX;LowMQ	END=148275950	GT	./.
chr1	148276504	.	T	.	.	LowGQX;LowMQ	END=148276664	GT	./.
chr1	148277378	.	C	.	.	LowGQX;LowMQ	END=148277576	GT	./.
chr1	148278126	.	A	.	.	LowGQX	END=148278285	GT	./.
chr1	148278970	.	C	.	.	LowGQX	END=148279020	GT	./.
chr1	148279021	.	G	.	.	LowGQX;LowMQ	END=148279168	GT	./.
chr1	148279695	.	T	.	.	LowGQX;LowMQ	END=148279855	GT	./.
chr1	148280569	.	C	.	.	LowGQX;LowMQ	END=148280767	GT	./.
chr1	148281319	.	A	.	.	LowGQX	END=148281328	GT	./.
chr1	148281329	.	C	.	.	LowGQX;LowMQ	END=148281477	GT	./.
chr1	148281478	.	A	.	.	LowGQX	.	GT	./.
chr1	148282163	.	C	.	.	LowGQX	END=148282180	GT	./.
chr1	148282181	.	A	.	.	LowGQX;LowMQ	END=148282361	GT	./.
chr1	148282888	.	T	.	.	LowGQX;LowMQ	END=148283048	GT	./.
chr1	148283762	.	C	.	.	LowGQX;LowMQ	END=148283960	GT	./.
chr1	148284512	.	A	.	.	LowGQX;LowMQ	END=148284671	GT	./.
chr1	148285356	.	C	.	.	LowGQX;LowMQ	END=148285554	GT	./.
chr1	148286081	.	T	.	.	LowGQX;LowMQ	END=148286241	GT	./.
chr1	148286934	.	A	.	.	LowGQX;LowMQ	END=148287128	GT	./.
chr1	148287705	.	A	.	.	LowGQX	END=148287809	GT	./.
chr1	148287810	.	T	.	.	LowGQX;LowMQ	END=148287864	GT	./.
chr1	148288549	.	C	.	.	LowGQX;LowMQ	END=148288747	GT	./.
chr1	148289247	.	A	.	.	LowGQX;LowMQ	END=148289406	GT	./.
chr1	148290101	.	C	.	.	LowGQX;LowMQ	END=148290299	GT	./.
chr1	148290851	.	T	.	.	LowGQX;LowMQ	END=148291011	GT	./.
chr1	148291704	.	A	.	.	LowGQX;LowMQ	END=148291898	GT	./.
chr1	148292475	.	A	.	.	LowGQX	END=148292553	GT	./.
chr1	148292554	.	G	.	.	LowGQX;LowMQ	END=148292634	GT	./.
chr1	148293319	.	C	.	.	LowGQX;LowMQ	END=148293517	GT	./.
chr1	148294017	.	A	.	.	LowGQX;LowMQ	END=148294176	GT	./.
chr1	148294871	.	C	.	.	LowGQX;LowMQ	END=148295069	GT	./.
chr1	148295621	.	T	.	.	LowGQX;LowMQ	END=148295781	GT	./.
chr1	148296474	.	A	.	.	LowGQX;LowMQ	END=148296668	GT	./.
chr1	148297245	.	A	.	.	LowGQX;LowMQ	END=148297404	GT	./.
chr1	148298089	.	C	.	.	LowGQX	END=148298111	GT	./.
chr1	148298112	.	A	.	.	LowGQX;LowMQ	END=148298287	GT	./.
chr1	148298787	.	A	.	.	LowGQX;LowMQ	END=148298946	GT	./.
chr1	148299641	.	C	.	.	LowGQX;LowMQ	END=148299839	GT	./.
chr1	148300391	.	T	.	.	LowGQX;LowMQ	END=148300551	GT	./.
chr1	148301244	.	A	.	.	LowGQX;LowMQ	END=148301438	GT	./.
chr1	148302005	.	A	.	.	LowGQX	END=148302164	GT	./.
chr1	148302849	.	C	.	.	LowGQX	END=148302867	GT	./.
chr1	148302868	.	A	.	.	LowGQX;LowMQ	END=148303047	GT	./.
chr1	148303547	.	A	.	.	LowGQX;LowMQ	END=148303706	GT	./.
chr1	148304401	.	C	.	.	LowGQX;LowMQ	END=148304599	GT	./.
chr1	148305151	.	T	.	.	LowGQX;LowMQ	END=148305311	GT	./.
chr1	148306004	.	A	.	.	LowGQX;LowMQ	END=148306198	GT	./.
chr1	148306775	.	A	.	.	LowGQX;LowMQ	END=148306934	GT	./.
chr1	148307619	.	C	.	.	LowGQX;LowMQ	END=148307653	GT	./.
chr1	148307654	.	C	.	.	LowGQX	END=148307674	GT	./.
chr1	148307675	.	G	.	.	LowGQX;LowMQ	END=148307817	GT	./.
chr1	148308321	.	A	.	.	LowGQX;LowMQ	END=148308480	GT	./.
chr1	148309175	.	C	.	.	LowGQX;LowMQ	END=148309373	GT	./.
chr1	148309925	.	T	.	.	LowGQX;LowMQ	END=148310085	GT	./.
chr1	148310778	.	A	.	.	LowGQX;LowMQ	END=148310972	GT	./.
chr1	148311541	.	A	.	.	LowGQX;LowMQ	END=148311599	GT	./.
chr1	148311600	.	T	.	.	LowGQX	END=148311700	GT	./.
chr1	148312385	.	C	.	.	LowGQX;LowMQ	END=148312583	GT	./.
chr1	148313083	.	A	.	.	LowGQX;LowMQ	END=148313242	GT	./.
chr1	148313937	.	C	.	.	LowGQX;LowMQ	END=148314135	GT	./.
chr1	148314687	.	T	.	.	LowGQX;LowMQ	END=148314847	GT	./.
chr1	148315561	.	C	.	.	LowGQX;LowMQ	END=148315759	GT	./.
chr1	148316309	.	A	.	.	LowGQX	END=148316361	GT	./.
chr1	148316362	.	C	.	.	LowGQX;LowMQ	END=148316468	GT	./.
chr1	148317153	.	C	.	.	LowGQX;LowMQ	END=148317351	GT	./.
chr1	148317855	.	A	.	.	LowGQX;LowMQ	END=148318014	GT	./.
chr1	148318709	.	C	.	.	LowGQX;LowMQ	END=148318907	GT	./.
chr1	148319459	.	T	.	.	LowGQX;LowMQ	END=148319619	GT	./.
chr1	148320312	.	A	.	.	LowGQX;LowMQ	END=148320506	GT	./.
chr1	148321061	.	A	.	.	LowGQX	END=148321220	GT	./.
chr1	148321905	.	C	.	.	LowGQX;LowMQ	END=148322103	GT	./.
chr1	148322603	.	A	.	.	LowGQX	END=148322639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:26
chr1	148322640	.	T	.	.	LowGQX	END=148322655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:3:25
chr1	148322656	.	G	.	.	LowGQX	END=148322679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:3:20
chr1	148322680	.	A	.	.	LowGQX;LowMQ	END=148322701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:3:17
chr1	148322702	.	T	.	.	LowGQX;LowMQ	END=148322723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:16
chr1	148322724	.	G	.	33.01	LowGQX;LowMQ	DP=16;MQ=16;MQ0=10	GT:AD:DP:GQ:MQ:GQX	0/0:12:16:3.01:16:3
chr1	148322725	.	G	.	.	LowGQX;LowMQ	END=148322756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:13
chr1	148322757	.	T	.	.	LowGQX;LowMQ	END=148322762	GT	./.
chr1	148323457	.	C	.	.	LowGQX;LowMQ	END=148323655	GT	./.
chr1	148324207	.	T	.	.	LowGQX;LowMQ	END=148324367	GT	./.
chr1	148325081	.	C	.	.	LowGQX;LowMQ	END=148325279	GT	./.
chr1	148325831	.	A	.	.	LowGQX	END=148325990	GT	./.
chr1	148326675	.	C	.	.	LowGQX;LowMQ	END=148326873	GT	./.
chr1	148327365	.	A	.	.	LowGQX;LowMQ	END=148327524	GT	./.
chr1	148328219	.	C	.	.	LowGQX	END=148328417	GT	./.
chr1	148328946	.	A	.	.	LowGQX;LowMQ	END=148329105	GT	./.
chr1	148330062	.	G	.	.	LowGQX;LowMQ	END=148330287	GT	./.
chr1	148334111	.	T	.	.	LowGQX;LowMQ	END=148334270	GT	./.
chr1	148335463	.	T	.	.	LowGQX;LowMQ	END=148335768	GT	./.
chr1	148335769	.	A	.	.	LowGQX	END=148335802	GT	./.
chr1	148336131	.	C	.	.	LowGQX;LowMQ	END=148336290	GT	./.
chr1	148337246	.	G	.	.	LowGQX;LowMQ	END=148337586	GT	./.
chr1	148337587	.	A	.	.	LowGQX	END=148337595	GT	./.
chr1	148338315	.	T	.	.	LowGQX;LowMQ	END=148338469	GT	./.
chr1	148340166	.	A	.	.	LowGQX;LowMQ	END=148340514	GT	./.
chr1	148340515	.	T	.	.	LowGQX	.	GT	./.
chr1	148341794	.	C	.	.	PASS	END=148341816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:27
chr1	148341817	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:6:27
chr1	148341818	.	T	.	.	PASS	END=148341844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:27
chr1	148341845	.	T	.	.	PASS	END=148341848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:26
chr1	148341849	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:3:26
chr1	148341850	.	A	.	.	PASS	END=148341851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:30:26
chr1	148341852	.	C	.	.	PASS	END=148341876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:26
chr1	148341877	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:19:26
chr1	148341878	.	T	.	.	PASS	END=148341910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:39:25
chr1	148341911	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:30:26
chr1	148341912	.	T	.	.	PASS	END=148341916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:26
chr1	148341917	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:33:27
chr1	148341918	.	C	.	.	PASS	END=148341963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:26
chr1	148341964	.	T	.	.	PASS	END=148341995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:29
chr1	148341996	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:9:33
chr1	148341997	.	C	.	.	PASS	END=148342002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:33
chr1	148342003	.	C	.	.	PASS	END=148342004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:34
chr1	148342005	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:32
chr1	148342006	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:32
chr1	148342456	.	G	.	.	LowGQX	END=148342460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	148342461	.	C	.	.	LowGQX	END=148342495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	148342496	.	C	.	.	LowGQX	END=148342499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:58
chr1	148342500	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:58
chr1	148342501	.	C	.	.	LowGQX	END=148342509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:58
chr1	148342510	.	C	.	.	LowGQX	END=148342519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:56
chr1	148342520	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:15:56
chr1	148342521	.	T	.	.	LowGQX	END=148342540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:55
chr1	148342541	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:55
chr1	148342542	.	T	.	.	LowGQX	END=148342548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:54
chr1	148342549	.	A	.	.	LowGQX	END=148342555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:54
chr1	148343593	.	C	.	.	LowGQX	END=148343604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:29
chr1	148343605	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:29
chr1	148343606	.	T	.	.	LowGQX	END=148343610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:32
chr1	148343611	.	A	.	.	LowGQX	END=148343615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:33
chr1	148343616	.	G	.	.	LowGQX	END=148343629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:36
chr1	148343630	.	T	.	.	LowGQX	END=148343634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:38
chr1	148343635	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:39
chr1	148343636	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:39
chr1	148343637	.	C	.	.	LowGQX	END=148343639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:39
chr1	148343640	.	A	.	.	LowGQX	END=148343641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:39
chr1	148343642	.	C	.	.	LowGQX	END=148343658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:39
chr1	148343659	.	T	.	48.05	LowGQX	DP=9;MQ=39;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:18.06:39:18
chr1	148343660	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:39
chr1	148343661	.	C	.	.	LowGQX	END=148343662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:39
chr1	148343663	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:39
chr1	148343664	.	C	.	.	LowGQX	END=148343665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:37
chr1	148343666	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:38
chr1	148343667	.	C	.	.	LowGQX	END=148343670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:38
chr1	148343671	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:37
chr1	148343672	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:37
chr1	148343673	.	C	.	.	LowGQX	END=148343684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:37
chr1	148343685	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:37
chr1	148343686	.	T	.	.	LowGQX	END=148343690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:36
chr1	148343691	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:36
chr1	148343692	.	G	.	.	LowGQX	END=148343715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:34
chr1	148343716	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:34
chr1	148343717	.	T	.	.	LowGQX	END=148343719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:27:34
chr1	148343720	.	A	.	.	PASS	END=148343721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:34
chr1	148343722	.	G	.	.	LowGQX	END=148343724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:27:34
chr1	148343725	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:34
chr1	148343726	.	G	.	.	LowGQX	END=148343731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:33
chr1	148343732	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:33
chr1	148343733	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:33
chr1	148343734	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:15:33
chr1	148343735	.	C	.	.	LowGQX	END=148343736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:33
chr1	148343737	.	C	.	.	PASS	END=148343740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:33
chr1	148343741	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:33
chr1	148343742	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:33
chr1	148343743	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:33
chr1	148343744	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:0:33
chr1	148343745	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:33
chr1	148343746	.	C	.	.	PASS	END=148343747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:33
chr1	148343748	.	T	.	.	LowGQX	END=148343751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:33
chr1	148343752	.	T	.	.	PASS	END=148343765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:35
chr1	148343766	.	G	.	.	LowGQX	END=148343767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:34
chr1	148343768	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:9:34
chr1	148343769	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:34
chr1	148343770	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:34
chr1	148343771	.	G	.	.	PASS	END=148343772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:34
chr1	148343773	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:34
chr1	148343774	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:34
chr1	148343775	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:21:34
chr1	148343776	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:36
chr1	148343777	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:36
chr1	148343778	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:36
chr1	148343779	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:36
chr1	148343780	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:36
chr1	148343781	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:36
chr1	148343782	.	T	.	.	PASS	END=148343783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:36
chr1	148343784	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:38
chr1	148343785	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:38
chr1	148343786	.	A	.	.	LowGQX	END=148343789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:39
chr1	148343790	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:39
chr1	148343791	.	A	.	.	LowGQX	END=148343792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:39
chr1	148343793	.	C	.	.	PASS	END=148343794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:39
chr1	148343795	.	G	.	.	LowGQX	END=148343797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:39
chr1	148343798	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:39
chr1	148343799	.	T	.	.	LowGQX	END=148343808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:43
chr1	148344639	.	C	.	.	PASS	END=148344649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:45:39
chr1	148344650	.	C	.	.	PASS	END=148344659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:51:40
chr1	148344660	.	G	.	87.15	PASS	DP=36;MQ=40;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:27:36:57.16:40:57
chr1	148344661	.	A	.	.	PASS	END=148344675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:57:40
chr1	148344676	.	T	.	.	PASS	END=148344682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:54:40
chr1	148344683	.	C	.	.	PASS	END=148344688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:57:40
chr1	148344689	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:51:40
chr1	148344690	.	C	.	.	PASS	END=148344705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:57:40
chr1	148344706	.	A	.	.	PASS	END=148344729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:54:41
chr1	148344730	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:75:42
chr1	148344731	.	A	.	.	PASS	END=148344740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:54:41
chr1	148344741	.	G	C	108.40	SB	BaseQRankSum=-0.940;DP=39;Dels=0.00;FS=7.732;HRun=0;HaplotypeScore=4.7346;MQ=41;MQ0=2;MQRankSum=-3.711;QD=2.78;ReadPosRankSum=-0.940;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:27,12:39:99:138,0,556:41:99:0.308
chr1	148344742	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:41
chr1	148346581	.	C	.	.	LowGQX	END=148346601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	148346602	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	148346603	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:21:60
chr1	148346604	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	148346605	.	A	.	.	LowGQX	END=148346609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	148346610	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	148346611	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:21:60
chr1	148346612	.	C	.	.	LowGQX	END=148346614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	148346615	.	C	.	.	LowGQX	END=148346616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	148346617	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	148346618	.	G	.	.	LowGQX	END=148346620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	148346621	.	G	.	.	LowGQX	END=148346623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	148346624	.	T	.	.	LowGQX	END=148346631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	148346632	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:59
chr1	148346633	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:1:59
chr1	148346634	.	T	.	.	LowGQX	END=148346678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:56
chr1	148346679	.	G	.	.	LowGQX	END=148346681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:54
chr1	148346682	.	G	.	.	LowGQX	END=148346685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:54
chr1	148346686	.	A	.	.	LowGQX	END=148346692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:54
chr1	148346693	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:54
chr1	148346694	.	G	.	.	LowGQX	END=148346708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:53
chr1	148346709	.	G	.	.	LowGQX	END=148346711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:53
chr1	148346712	.	C	.	.	LowGQX	END=148346728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:47
chr1	148346729	.	T	.	.	LowGQX	END=148346741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:45
chr1	148346742	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:45
chr1	148346743	.	G	.	.	LowGQX	END=148346756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:45
chr1	148577637	.	C	.	.	LowGQX;LowMQ	END=148577826	GT	./.
chr1	148579553	.	C	.	.	LowGQX	END=148579589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:6:20
chr1	148579590	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:3:21
chr1	148579591	.	T	.	.	LowGQX	END=148579604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:6:20
chr1	148579605	.	G	.	.	LowGQX	END=148579615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:12:23
chr1	148579616	.	G	.	.	LowGQX	END=148579618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:18:27
chr1	148579619	.	C	.	.	LowGQX	END=148579624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:21:33
chr1	148579625	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:1:33
chr1	148579626	.	C	.	.	LowGQX	END=148579642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:21:33
chr1	148579643	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:18:33
chr1	148579644	.	A	.	.	LowGQX	END=148579671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:21:32
chr1	148579672	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:18:33
chr1	148579673	.	G	.	.	LowGQX	END=148579689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:21:33
chr1	148579690	.	A	.	.	LowGQX	END=148579691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:15:35
chr1	148579692	.	C	.	.	LowGQX	END=148579704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:18:35
chr1	148579705	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:15:36
chr1	148579706	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:21:36
chr1	148579707	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:15:36
chr1	148579708	.	G	.	.	LowGQX	END=148579710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:18:36
chr1	148580467	.	A	.	.	LowGQX;LowMQ	END=148580528	GT	./.
chr1	148580529	.	T	.	.	LowGQX;LowMQ	END=148580539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:6
chr1	148580540	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148580541	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:15:3:6
chr1	148580542	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148580543	.	A	.	.	LowGQX;LowMQ	END=148580544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:3:6
chr1	148580545	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148580546	.	T	.	.	LowGQX;LowMQ	END=148580561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:3:6
chr1	148580562	.	G	.	32.99	LowGQX;LowMQ	DP=14;MQ=6;MQ0=12	GT:AD:DP:GQ:MQ:GQX	0/0:8:14:3:6:3
chr1	148580563	.	C	.	.	LowGQX;LowMQ	END=148580569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:3:6
chr1	148580570	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148580571	.	C	.	.	LowGQX;LowMQ	END=148580585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:3:5
chr1	148580586	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148580587	.	T	.	.	LowGQX;LowMQ	END=148580599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:3:5
chr1	148580600	.	A	.	32.99	LowGQX;LowMQ	DP=19;MQ=5;MQ0=17	GT:AD:DP:GQ:MQ:GQX	0/0:12:19:3:5:3
chr1	148580601	.	C	.	.	LowGQX;LowMQ	END=148580613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:3:5
chr1	148580614	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148580615	.	T	.	.	LowGQX;LowMQ	END=148580621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:3:5
chr1	148580622	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148580623	.	G	.	32.99	LowGQX;LowMQ	DP=19;MQ=5;MQ0=17	GT:AD:DP:GQ:MQ:GQX	0/0:13:19:3:5:3
chr1	148580624	.	C	.	.	LowGQX;LowMQ	END=148580630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:3:5
chr1	148580631	.	A	.	.	LowGQX;LowMQ	END=148580653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:3:6
chr1	148580654	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148580655	.	A	.	.	LowGQX;LowMQ	END=148580658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:3:6
chr1	148580659	.	C	.	.	LowGQX;LowMQ	END=148580661	GT	./.
chr1	148580662	.	A	.	.	LowGQX;LowMQ	END=148580664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:6
chr1	148580665	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148580666	.	G	.	.	LowGQX;LowMQ	END=148580667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:3:6
chr1	148580668	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148580669	.	G	.	.	LowGQX;LowMQ	END=148580671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:3:6
chr1	148580672	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148580673	.	A	.	.	LowGQX;LowMQ	END=148580678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:3:6
chr1	148580679	.	C	.	.	LowGQX;LowMQ	END=148580723	GT	./.
chr1	148580724	.	A	.	32.99	LowGQX;LowMQ	DP=6;MQ=9;MQ0=5	GT:AD:DP:GQ:MQ:GQX	0/0:4:6:3:9:3
chr1	148580725	.	C	.	.	LowGQX;LowMQ	END=148580769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:10
chr1	148580770	.	G	.	.	LowGQX;LowMQ	END=148580782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:6:18
chr1	148580783	.	A	C	3.17	LowGQX;LowMQ;LowQD;SB	BaseQRankSum=0.727;DP=8;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=18;MQ0=4;MQRankSum=0.727;QD=0.40;ReadPosRankSum=0.727;SB=0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:7,1:8:30.30:30,0,45:18:3:0.125
chr1	148580784	.	A	.	.	LowGQX;LowMQ	END=148580816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:6:17
chr1	148581723	.	T	.	.	LowGQX;LowMQ	END=148581882	GT	./.
chr1	148582260	.	C	.	.	LowGQX;LowMQ	END=148582282	GT	./.
chr1	148582283	.	A	.	.	LowGQX;LowMQ	END=148582299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:11
chr1	148582300	.	C	.	.	LowGQX;LowMQ	END=148582327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:14
chr1	148582328	.	A	.	.	LowGQX;LowMQ	END=148582373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:6:15
chr1	148582374	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:11:12:16
chr1	148582375	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:11:6:16
chr1	148582376	.	C	.	.	LowGQX;LowMQ	END=148582379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:12:16
chr1	148582380	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:11:0:16
chr1	148582381	.	G	.	.	LowGQX;LowMQ	END=148582388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:9:16
chr1	148582389	.	C	.	.	LowGQX;LowMQ	END=148582390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:6:17
chr1	148582391	.	A	.	.	LowGQX;LowMQ	END=148582395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:9:17
chr1	148582396	.	T	.	.	LowGQX;LowMQ	END=148582399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:6:17
chr1	148582400	.	T	.	.	LowGQX;LowMQ	END=148582421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:9:16
chr1	148582422	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148582423	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:10:6:17
chr1	148582424	.	T	.	.	LowGQX;LowMQ	END=148582425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:9:17
chr1	148582426	.	C	.	.	LowGQX;LowMQ	END=148582428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:3:18
chr1	148582429	.	C	.	.	LowGQX;LowMQ	END=148582432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:9:19
chr1	148582433	.	C	.	.	LowGQX;LowMQ	END=148582434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:6:18
chr1	148582435	.	A	.	.	LowGQX	END=148582441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:9:20
chr1	148582442	.	A	.	.	LowGQX;LowMQ	END=148582459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:6:19
chr1	148582460	.	G	.	.	LowGQX	END=148582520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:20
chr1	148582521	.	C	.	.	LowGQX	END=148582577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:23
chr1	148582578	.	G	.	.	LowGQX	END=148582585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:27
chr1	148582586	.	A	.	.	LowGQX	END=148582602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:27
chr1	148582603	.	A	.	33	LowGQX	DP=2;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:27:3
chr1	148582604	.	G	.	.	LowGQX	END=148582609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:27
chr1	148583742	.	C	.	.	LowGQX;LowMQ	END=148583744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:9:7
chr1	148583745	.	G	.	.	LowGQX;LowMQ	END=148583746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:3:5
chr1	148583747	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148583748	.	C	.	.	LowGQX;LowMQ	END=148583750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:3:5
chr1	148583751	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148583752	.	G	.	.	LowGQX;LowMQ	END=148583753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:3:4
chr1	148583754	.	C	.	.	LowGQX;LowMQ	END=148583755	GT	./.
chr1	148583756	.	G	.	.	LowGQX;LowMQ	END=148583760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:3:4
chr1	148583761	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148583762	.	T	.	.	LowGQX;LowMQ	END=148583774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:3:5
chr1	148583775	.	T	.	.	LowGQX;LowMQ	END=148583789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:3:5
chr1	148583790	.	G	.	.	LowGQX;LowMQ	END=148583826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:3:4
chr1	148583827	.	A	.	.	LowGQX;LowMQ	END=148583843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:3:4
chr1	148583844	.	A	.	.	LowGQX;LowMQ	END=148583881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:6:3
chr1	148583882	.	T	.	.	LowGQX;LowMQ	END=148583901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:3:3
chr1	148587745	.	T	.	.	LowGQX;LowMQ	END=148587953	GT	./.
chr1	148588910	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:3:6:16
chr1	148588911	.	G	.	.	LowGQX;LowMQ	END=148588919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:18
chr1	148588920	.	T	.	.	LowGQX	END=148588931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:21
chr1	148588932	.	A	.	.	LowGQX	END=148588953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:21
chr1	148588954	.	A	.	.	LowGQX	END=148588961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:21
chr1	148588962	.	A	.	.	LowGQX	END=148588977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:21
chr1	148588978	.	C	A	82.33	PASS	BaseQRankSum=0.583;DP=12;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=21;MQ0=0;MQRankSum=-1.073;QD=6.86;ReadPosRankSum=0.259;SB=-37.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:6,6:12:99:112,0,125:21:82:0.500
chr1	148588979	.	T	.	.	LowGQX	END=148589026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:21
chr1	148589027	.	A	.	.	LowGQX	END=148589061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:21
chr1	148589062	.	G	.	.	LowGQX	END=148589069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:21
chr1	148589648	.	C	.	.	LowGQX;LowMQ	END=148589663	GT	./.
chr1	148589664	.	C	.	.	LowGQX;LowMQ	END=148589666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:3:9
chr1	148589667	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589668	.	A	.	.	LowGQX;LowMQ	END=148589677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:3:9
chr1	148589678	.	T	.	.	LowGQX;LowMQ	END=148589679	GT	./.
chr1	148589680	.	G	.	.	LowGQX;LowMQ	END=148589682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:3:9
chr1	148589683	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589684	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:10:3:9
chr1	148589685	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589686	.	A	.	.	LowGQX;LowMQ	END=148589690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:3:8
chr1	148589691	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589692	.	C	.	.	LowGQX;LowMQ	END=148589701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:3:8
chr1	148589702	.	T	.	.	LowGQX;LowMQ	END=148589703	GT	./.
chr1	148589704	.	C	.	.	LowGQX;LowMQ	END=148589708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:3:8
chr1	148589709	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589710	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:11:3:8
chr1	148589711	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589712	.	A	.	.	LowGQX;LowMQ	END=148589713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:3:8
chr1	148589714	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589715	.	G	.	.	LowGQX;LowMQ	END=148589723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:3:8
chr1	148589724	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589725	.	T	.	.	LowGQX;LowMQ	END=148589727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:3:8
chr1	148589728	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589729	.	C	.	.	LowGQX;LowMQ	END=148589738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:3:9
chr1	148589739	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589740	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:10:3:9
chr1	148589741	.	G	.	.	LowGQX;LowMQ	END=148589742	GT	./.
chr1	148589743	.	T	.	.	LowGQX;LowMQ	END=148589748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:3:9
chr1	148589749	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589750	.	A	.	.	LowGQX;LowMQ	END=148589757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:3:9
chr1	148589758	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589759	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:7:3:10
chr1	148589760	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589761	.	T	.	.	LowGQX;LowMQ	END=148589766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:10
chr1	148589767	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589768	.	A	.	.	LowGQX;LowMQ	END=148589769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:11
chr1	148589770	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589771	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:6:3:11
chr1	148589772	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589773	.	T	.	.	LowGQX;LowMQ	END=148589779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:12
chr1	148589780	.	G	.	33	LowGQX;LowMQ	DP=5;MQ=12;MQ0=4	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:12:3
chr1	148589781	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:5:3:12
chr1	148589782	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589783	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:5:3:12
chr1	148589784	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589785	.	T	.	.	LowGQX;LowMQ	END=148589789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:12
chr1	148589790	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589791	.	G	.	.	LowGQX;LowMQ	END=148589793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:12
chr1	148589794	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589795	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:5:3:12
chr1	148589796	.	G	.	33	LowGQX;LowMQ	DP=5;MQ=12;MQ0=4	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:12:3
chr1	148589797	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:5:3:12
chr1	148589798	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148589799	.	G	.	33	LowGQX;LowMQ	DP=5;MQ=12;MQ0=4	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:12:3
chr1	148589800	.	C	.	.	LowGQX;LowMQ	END=148589802	GT	./.
chr1	148589803	.	C	.	.	LowGQX;LowMQ	END=148589810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:10
chr1	148589811	.	T	.	.	LowGQX;LowMQ	END=148589835	GT	./.
chr1	148590469	.	C	.	.	LowGQX;LowMQ	END=148590628	GT	./.
chr1	148591188	.	C	.	.	LowGQX	END=148591337	GT	./.
chr1	148591338	.	A	.	.	LowGQX;LowMQ	END=148591375	GT	./.
chr1	148591999	.	C	.	.	LowGQX	END=148592002	GT	./.
chr1	148592003	.	G	.	.	LowGQX;LowMQ	END=148592158	GT	./.
chr1	148592778	.	C	.	.	LowGQX;LowMQ	END=148592793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:3:11
chr1	148592794	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148592795	.	A	.	.	LowGQX;LowMQ	END=148592799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:3:11
chr1	148592800	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148592801	.	G	.	.	LowGQX;LowMQ	END=148592826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:3:11
chr1	148592827	.	A	.	.	LowGQX;LowMQ	END=148592929	GT	./.
chr1	148592930	.	G	.	.	LowGQX;LowMQ	END=148592965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:3:11
chr1	148593625	.	T	.	.	LowGQX;LowMQ	END=148593629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:3:10
chr1	148593630	.	G	.	.	LowGQX;LowMQ	END=148593631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:3:7
chr1	148593632	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148593633	.	G	.	.	LowGQX;LowMQ	END=148593641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:3:7
chr1	148593642	.	G	.	.	LowGQX;LowMQ	END=148593658	GT	./.
chr1	148593659	.	A	.	.	LowGQX;LowMQ	END=148593662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:3:7
chr1	148593663	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148593664	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:18:3:9
chr1	148593665	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148593666	.	A	.	.	LowGQX;LowMQ	END=148593682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:3:9
chr1	148593683	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148593684	.	A	.	.	LowGQX;LowMQ	END=148593690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:3:9
chr1	148593691	.	G	.	.	LowGQX;LowMQ	END=148593692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:6:11
chr1	148593693	.	G	.	.	LowGQX;LowMQ	END=148593698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:3:10
chr1	148593699	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:20:9:10
chr1	148593700	.	G	.	.	LowGQX;LowMQ	END=148593703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:3:10
chr1	148593704	.	A	.	.	LowGQX;LowMQ	END=148593707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:6:10
chr1	148593708	.	G	.	.	LowGQX;LowMQ	END=148593711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:3:10
chr1	148593712	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:20:9:10
chr1	148593713	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:19:3:11
chr1	148593714	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	148593715	.	A	.	.	LowGQX;LowMQ	END=148593719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:6:11
chr1	148593720	.	G	.	.	LowGQX;LowMQ	END=148593722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:3:11
chr1	148593723	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:18:0:11
chr1	148593724	.	A	.	.	LowGQX;LowMQ	END=148593726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:9:11
chr1	148593727	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:17:3:11
chr1	148593728	.	A	.	.	LowGQX;LowMQ	END=148593729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:9:11
chr1	148593730	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:17:3:11
chr1	148593731	.	A	.	.	LowGQX;LowMQ	END=148593734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:6:11
chr1	148593735	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:17:3:11
chr1	148593736	.	A	.	.	LowGQX;LowMQ	END=148593743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:6:11
chr1	148593744	.	G	.	.	LowGQX;LowMQ	END=148593747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:3:11
chr1	148593748	.	A	.	.	LowGQX;LowMQ	END=148593751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:6:11
chr1	148593752	.	G	.	.	LowGQX;LowMQ	END=148593775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:9:12
chr1	148593776	.	T	.	.	LowGQX;LowMQ	END=148593785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:6:13
chr1	148594395	.	A	.	.	LowGQX	END=148594396	GT	./.
chr1	148594397	.	G	.	.	LowGQX	END=148594513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:54
chr1	148594514	.	A	.	33	LowGQX	DP=3;MQ=54;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:54:3
chr1	148594515	.	A	.	.	LowGQX	END=148594524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:54
chr1	148594525	.	A	.	36.01	LowGQX	DP=3;MQ=54;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:54:6
chr1	148594526	.	C	.	.	LowGQX	END=148594527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:54
chr1	148594528	.	C	.	33	LowGQX	DP=3;MQ=54;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:3.01:54:3
chr1	148594529	.	A	.	.	LowGQX	END=148594537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:54
chr1	148594538	.	A	.	36.01	LowGQX	DP=3;MQ=54;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:54:6
chr1	148594539	.	G	.	.	LowGQX	END=148594547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:51
chr1	148594548	.	A	.	.	LowGQX	END=148594549	GT	./.
chr1	148594550	.	C	.	.	LowGQX	END=148594554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	148594555	.	C	.	.	LowGQX	END=148594558	GT	./.
chr1	148594559	.	T	.	.	LowGQX	END=148594560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	148594561	.	A	.	.	LowGQX	END=148594565	GT	./.
chr1	148594566	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr1	148594567	.	A	.	.	LowGQX	.	GT	./.
chr1	148594568	.	C	.	.	LowGQX	END=148594587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:40
chr1	148594588	.	C	.	33	LowGQX	DP=2;MQ=40;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:40:3
chr1	148594589	.	G	.	.	LowGQX	END=148594595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:40
chr1	148594596	.	A	.	33	LowGQX	DP=2;MQ=40;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:40:3
chr1	148594597	.	G	.	.	LowGQX	END=148594603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:40
chr1	148594604	.	C	.	10.70	LowGQX	DP=2;MQ=40;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.05:40:0
chr1	148594605	.	C	.	10.70	LowGQX	DP=2;MQ=40;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.05:40:0
chr1	148594606	.	T	.	.	LowGQX	END=148594642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	148644074	.	G	.	.	LowMQ	END=148644082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:30:10
chr1	148644083	.	G	.	.	LowMQ	END=148644112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:36:11
chr1	148644113	.	A	.	.	LowMQ	END=148644127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:48:11
chr1	148644128	.	A	.	.	LowMQ	END=148644129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:36:11
chr1	148644130	.	G	.	.	LowMQ	END=148644147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:51:11
chr1	148644148	.	C	.	.	LowMQ	END=148644161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:60:10
chr1	148644162	.	C	.	.	LowMQ	END=148644164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:57:10
chr1	148644165	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:150:16:10
chr1	148644166	.	C	.	.	LowMQ	END=148644178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:66:10
chr1	148644179	.	A	.	.	LowMQ	END=148644191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:60:10
chr1	148644192	.	T	.	.	LowMQ	END=148644199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:69:10
chr1	148644200	.	C	.	.	LowMQ	END=148644201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:63:10
chr1	148644202	.	G	.	.	LowMQ	END=148644223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:75:9
chr1	148644224	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:186:45:9
chr1	148644225	.	G	.	.	LowMQ	END=148644249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:60:8
chr1	148644250	.	A	.	.	LowMQ	END=148644262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:57:8
chr1	148644263	.	T	.	.	LowMQ	END=148644264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:69:9
chr1	148644265	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:206:39:9
chr1	148644266	.	A	.	.	LowMQ	END=148644278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:60:8
chr1	148644279	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:201:49:9
chr1	148644280	.	T	.	.	LowMQ	END=148644281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:78:9
chr1	148644282	.	A	.	.	LowMQ	END=148644283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:57:9
chr1	148644284	.	T	.	.	LowMQ	END=148644291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:69:10
chr1	148644292	.	C	.	.	LowMQ	END=148644330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:90:12
chr1	148644331	.	A	.	.	LowMQ	END=148644359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:16
chr1	148644360	.	A	.	.	LowMQ	END=148644365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:19
chr1	148644366	.	G	.	.	PASS	END=148644398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:20
chr1	148644399	.	C	.	.	PASS	END=148644443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:25
chr1	148644444	.	A	.	.	PASS	END=148644509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:90:24
chr1	148644510	.	C	.	132.19	PASS	DP=64;MQ=24;MQ0=21	GT:AD:DP:GQ:MQ:GQX	0/0:46:64:99:24:99
chr1	148644511	.	G	.	.	PASS	END=148644529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:81:22
chr1	148644530	.	A	.	.	PASS	END=148644539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:63:21
chr1	148644540	.	C	.	.	PASS	END=148644549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:54:20
chr1	148644550	.	G	.	.	PASS	END=148644558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:48:20
chr1	148644559	.	T	.	.	LowMQ	END=148644565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:42:17
chr1	148644566	.	T	.	.	LowMQ	END=148644567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:33:14
chr1	148644568	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:35:27:14
chr1	148644569	.	G	.	.	LowMQ	END=148644573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:30:13
chr1	148644574	.	A	.	.	LowGQX;LowMQ	END=148644575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:27:13
chr1	148644576	.	T	.	.	LowMQ	END=148644577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:30:13
chr1	148644578	.	T	.	.	LowGQX;LowMQ	END=148644580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:24:13
chr1	148739722	.	C	.	.	LowGQX;LowMQ	END=148739911	GT	./.
chr1	148741637	.	C	.	.	LowGQX;LowMQ	END=148741652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:3:5
chr1	148741653	.	G	.	.	LowGQX;LowMQ	END=148741661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:0:5
chr1	148741662	.	T	.	.	LowGQX;LowMQ	END=148741794	GT	./.
chr1	148742554	.	A	.	.	LowGQX;LowMQ	END=148742579	GT	./.
chr1	148742580	.	C	.	.	LowGQX;LowMQ	END=148742629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:3:9
chr1	148742630	.	A	.	.	LowGQX;LowMQ	END=148742634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:3:8
chr1	148742635	.	A	.	.	LowGQX;LowMQ	END=148742735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:3:11
chr1	148742736	.	C	.	.	LowGQX;LowMQ	END=148742779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:3:11
chr1	148742780	.	C	.	.	LowGQX;LowMQ	END=148742785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:3:13
chr1	148742786	.	A	.	.	LowGQX;LowMQ	END=148742903	GT	./.
chr1	148743810	.	T	.	.	LowGQX;LowMQ	END=148743969	GT	./.
chr1	148744347	.	C	.	.	LowGQX;LowMQ	END=148744648	GT	./.
chr1	148744649	.	T	.	.	LowGQX	END=148744696	GT	./.
chr1	148745829	.	C	.	.	LowGQX;LowMQ	END=148745988	GT	./.
chr1	148749789	.	T	.	.	LowGQX;LowMQ	END=148749997	GT	./.
chr1	148750954	.	T	.	.	LowGQX;LowMQ	END=148751095	GT	./.
chr1	148751096	.	C	.	.	LowGQX	END=148751113	GT	./.
chr1	148751696	.	C	.	.	LowGQX;LowMQ	END=148751883	GT	./.
chr1	148752517	.	C	.	.	LowGQX;LowMQ	END=148752676	GT	./.
chr1	148753176	.	C	.	.	LowGQX	END=148753275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	148753276	.	A	.	.	LowGQX	.	GT	./.
chr1	148753277	.	G	.	.	LowGQX	END=148753286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	148753287	.	T	.	.	LowGQX	.	GT	./.
chr1	148753288	.	C	.	.	LowGQX	END=148753290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	148753291	.	G	.	.	LowGQX	.	GT	./.
chr1	148753292	.	C	.	.	LowGQX	END=148753340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	148753341	.	T	.	.	LowGQX	END=148753346	GT	./.
chr1	148753347	.	A	.	.	LowGQX;LowMQ	END=148753423	GT	./.
chr1	148754047	.	C	.	.	LowGQX	END=148754073	GT	./.
chr1	148754074	.	G	.	.	LowGQX;LowMQ	END=148754206	GT	./.
chr1	148754822	.	C	.	.	LowGQX	END=148754851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:24
chr1	148754852	.	T	.	.	LowGQX	.	GT	./.
chr1	148754853	.	G	.	.	LowGQX	END=148754857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr1	148754858	.	T	C	7.08	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=28;MQ0=1;QD=3.54;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:36,3,0:28:3:1.000
chr1	148754859	.	A	.	.	LowGQX	END=148754863	GT	./.
chr1	148754864	.	A	.	.	LowGQX;LowMQ	END=148754903	GT	./.
chr1	148754904	.	A	.	.	LowGQX	END=148754941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:24
chr1	148754942	.	A	T	47.39	LowGQ;LowGQX;SB	DP=7;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=24;MQ0=1;QD=6.77;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,6:7:6.02:79,6,0:24:6:0.857
chr1	148754943	.	G	.	.	LowGQX	END=148755008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:3:24
chr1	148755009	.	T	.	.	LowGQX	.	GT	./.
chr1	148755669	.	T	.	.	LowGQX;LowMQ	END=148755829	GT	./.
chr1	148756368	.	T	.	.	LowGQX	END=148756533	GT	./.
chr1	148756534	.	A	.	.	LowGQX;LowMQ	END=148756696	GT	./.
chr1	148756697	.	A	.	.	LowGQX	END=148756747	GT	./.
chr1	148806078	.	G	.	.	LowGQX;LowMQ	END=148806584	GT	./.
chr1	149398788	.	C	.	.	LowGQX	END=149399179	GT	./.
chr1	149400131	.	C	.	.	LowGQX	END=149400134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:52
chr1	149400135	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:53
chr1	149400136	.	G	.	.	LowGQX	END=149400143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:53
chr1	149400144	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:53
chr1	149400145	.	C	.	.	LowGQX	END=149400146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:55
chr1	149400147	.	G	.	.	LowGQX	END=149400151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:55
chr1	149400152	.	T	.	.	LowGQX	END=149400155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:56
chr1	149400156	.	G	.	.	LowGQX	END=149400159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:56
chr1	149400160	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:56
chr1	149400161	.	C	.	.	LowGQX	END=149400167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:56
chr1	149400168	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:56
chr1	149400169	.	A	.	.	LowGQX	END=149400172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:56
chr1	149400173	.	C	.	.	PASS	END=149400176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:57
chr1	149400177	.	G	.	.	LowGQX	END=149400186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:57
chr1	149400187	.	G	.	.	PASS	END=149400189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:57
chr1	149400190	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:57
chr1	149400191	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:57
chr1	149400192	.	G	.	.	LowGQX	END=149400193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:57
chr1	149400194	.	G	.	.	PASS	END=149400195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:57
chr1	149400196	.	T	.	.	LowGQX	END=149400197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:57
chr1	149400198	.	G	.	.	PASS	END=149400211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:58
chr1	149400212	.	A	.	.	PASS	END=149400216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:58
chr1	149400217	.	T	.	.	PASS	END=149400229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:58
chr1	149400230	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:36:58
chr1	149400231	.	C	.	.	PASS	END=149400236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:58
chr1	149400237	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:63:59
chr1	149400238	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:59
chr1	149400239	.	C	.	.	PASS	END=149400249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:59
chr1	149400250	.	T	.	.	PASS	END=149400272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:59
chr1	149400273	.	C	.	.	PASS	END=149400290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	149400291	.	G	.	.	PASS	END=149400311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	149400312	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:74:60
chr1	149400313	.	T	.	.	PASS	END=149400389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:57
chr1	149400390	.	C	.	.	PASS	END=149400406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:53
chr1	149400407	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:48:52
chr1	149400408	.	G	.	.	PASS	END=149400417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:50
chr1	149400418	.	T	.	.	PASS	END=149400422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:49
chr1	149400423	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:63:48
chr1	149400424	.	T	.	.	PASS	END=149400425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:48
chr1	149400426	.	C	.	.	PASS	END=149400429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:48
chr1	149400430	.	T	.	.	PASS	END=149400432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:48
chr1	149400433	.	T	.	.	PASS	END=149400445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:45
chr1	149400446	.	T	.	.	PASS	END=149400454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:43
chr1	149400455	.	C	.	.	PASS	END=149400481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:42
chr1	149400482	.	G	.	.	PASS	END=149400487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:42
chr1	149400488	.	T	.	.	PASS	END=149400490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:42
chr1	149400491	.	T	.	.	PASS	END=149400516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:41
chr1	149400517	.	C	.	.	PASS	END=149400533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:41
chr1	149400534	.	A	.	.	PASS	END=149400538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:41
chr1	149400539	.	C	.	.	LowGQX	END=149400542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:41
chr1	149450954	.	C	.	.	LowGQX	END=149451104	GT	./.
chr1	149459383	.	T	.	.	LowGQX	END=149459392	GT	./.
chr1	149459393	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459394	.	T	.	.	LowGQX	END=149459396	GT	./.
chr1	149459397	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459398	.	G	.	.	LowGQX	.	GT	./.
chr1	149459399	.	G	.	.	LowGQX	END=149459407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459408	.	A	.	.	LowGQX	.	GT	./.
chr1	149459409	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459410	.	T	.	.	LowGQX	.	GT	./.
chr1	149459411	.	C	.	.	LowGQX	END=149459413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459414	.	T	.	.	LowGQX	.	GT	./.
chr1	149459415	.	T	.	.	LowGQX	END=149459416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459417	.	T	.	.	LowGQX	.	GT	./.
chr1	149459418	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459419	.	T	.	.	LowGQX	END=149459420	GT	./.
chr1	149459421	.	T	.	.	LowGQX	END=149459427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459428	.	T	.	.	LowGQX	END=149459429	GT	./.
chr1	149459430	.	G	.	.	LowGQX	END=149459432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459433	.	T	.	.	LowGQX	.	GT	./.
chr1	149459434	.	C	.	.	LowGQX	END=149459436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459437	.	G	.	.	LowGQX	.	GT	./.
chr1	149459438	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459439	.	C	.	.	LowGQX	END=149459440	GT	./.
chr1	149459441	.	G	.	.	LowGQX	END=149459448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459449	.	C	.	.	LowGQX	.	GT	./.
chr1	149459450	.	A	.	.	LowGQX	END=149459454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459455	.	C	.	.	LowGQX	.	GT	./.
chr1	149459456	.	T	.	.	LowGQX	END=149459465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459466	.	T	.	.	LowGQX	.	GT	./.
chr1	149459467	.	G	.	.	LowGQX	END=149459471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459472	.	A	.	.	LowGQX	.	GT	./.
chr1	149459473	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459474	.	C	.	.	LowGQX	.	GT	./.
chr1	149459475	.	C	.	.	LowGQX	END=149459486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459487	.	T	.	.	LowGQX	.	GT	./.
chr1	149459488	.	T	.	.	LowGQX	END=149459490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459491	.	T	.	.	LowGQX	END=149459493	GT	./.
chr1	149459494	.	A	.	.	LowGQX	END=149459499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459500	.	G	.	.	LowGQX	.	GT	./.
chr1	149459501	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459502	.	A	.	.	LowGQX	.	GT	./.
chr1	149459503	.	G	.	.	LowGQX	END=149459514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459515	.	A	.	.	LowGQX	.	GT	./.
chr1	149459516	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459517	.	G	.	.	LowGQX	.	GT	./.
chr1	149459518	.	G	.	.	LowGQX	END=149459538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459539	.	C	.	.	LowGQX	.	GT	./.
chr1	149459540	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459541	.	A	.	.	LowGQX	.	GT	./.
chr1	149459542	.	T	.	.	LowGQX	END=149459543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	149459544	.	T	.	.	LowGQX	END=149459549	GT	./.
chr1	149553066	.	G	.	.	LowGQX;LowMQ	END=149553122	GT	./.
chr1	149553123	.	C	.	.	LowGQX;LowMQ	END=149553126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:3:5
chr1	149553127	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553128	.	G	.	.	LowGQX;LowMQ	END=149553130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:3:4
chr1	149553131	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553132	.	C	.	.	LowGQX;LowMQ	END=149553137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:3:5
chr1	149553138	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553139	.	C	.	.	LowGQX;LowMQ	END=149553141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:3:4
chr1	149553142	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553143	.	C	.	.	LowGQX;LowMQ	END=149553149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:3:4
chr1	149553150	.	T	.	.	LowGQX;LowMQ	END=149553151	GT	./.
chr1	149553152	.	T	.	.	LowGQX;LowMQ	END=149553156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:3:4
chr1	149553157	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553158	.	C	.	.	LowGQX;LowMQ	END=149553160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:3:4
chr1	149553161	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553162	.	A	.	.	LowGQX;LowMQ	END=149553165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:3:4
chr1	149553166	.	T	.	33	LowGQX;LowMQ	DP=37;MQ=4;MQ0=36	GT:AD:DP:GQ:MQ:GQX	0/0:27:37:3.01:4:3
chr1	149553167	.	A	.	.	LowGQX;LowMQ	END=149553170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:3:4
chr1	149553171	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553172	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:37:3:4
chr1	149553173	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553174	.	G	.	.	LowGQX;LowMQ	END=149553175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:3:4
chr1	149553176	.	G	.	33	LowGQX;LowMQ	DP=37;MQ=4;MQ0=36	GT:AD:DP:GQ:MQ:GQX	0/0:27:37:3.01:4:3
chr1	149553177	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553178	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:36:3:4
chr1	149553179	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553180	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:36:3:4
chr1	149553181	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553182	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:36:3:4
chr1	149553183	.	T	.	.	LowGQX;LowMQ	END=149553184	GT	./.
chr1	149553185	.	T	.	.	LowGQX;LowMQ	END=149553186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:3:4
chr1	149553187	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553188	.	T	.	.	LowGQX;LowMQ	END=149553190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:3:4
chr1	149553191	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553192	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:38:3:4
chr1	149553193	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553194	.	G	.	.	LowGQX;LowMQ	END=149553196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:3:4
chr1	149553197	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553198	.	A	.	.	LowGQX;LowMQ	END=149553200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:3:4
chr1	149553201	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553202	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:42:3:4
chr1	149553203	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553204	.	G	.	.	LowGQX;LowMQ	END=149553206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:3:4
chr1	149553207	.	A	.	.	LowGQX;LowMQ	END=149553209	GT	./.
chr1	149553210	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:42:3:4
chr1	149553211	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553212	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:38:3:4
chr1	149553213	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553214	.	T	.	.	LowGQX;LowMQ	END=149553217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:3:4
chr1	149553218	.	T	.	.	LowGQX;LowMQ	END=149553219	GT	./.
chr1	149553220	.	A	.	.	LowGQX;LowMQ	END=149553221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:3:4
chr1	149553222	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553223	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:34:3:4
chr1	149553224	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553225	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:37:3:4
chr1	149553226	.	G	.	.	LowGQX;LowMQ	END=149553227	GT	./.
chr1	149553228	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:34:3:4
chr1	149553229	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553230	.	C	.	.	LowGQX;LowMQ	END=149553234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:3:4
chr1	149553235	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553236	.	T	.	.	LowGQX;LowMQ	END=149553237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:3:4
chr1	149553238	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	149553239	.	C	.	.	LowGQX;LowMQ	END=149553244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:3:4
chr1	149553245	.	T	.	.	LowGQX;LowMQ	END=149553246	GT	./.
chr1	149553247	.	T	.	.	LowGQX;LowMQ	END=149553249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:3:4
chr1	149553250	.	C	.	.	LowGQX;LowMQ	END=149553251	GT	./.
chr1	149553252	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:36:3:4
chr1	149553253	.	G	.	.	LowGQX;LowMQ	END=149553254	GT	./.
chr1	149553255	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:40:3:4
chr1	149553256	.	T	.	.	LowGQX;LowMQ	END=149553257	GT	./.
chr1	149553258	.	A	.	.	LowGQX;LowMQ	END=149553259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:3:4
chr1	149553260	.	G	.	.	LowGQX;LowMQ	END=149553261	GT	./.
chr1	149553262	.	G	.	.	LowGQX;LowMQ	END=149553266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:3:4
chr1	149553267	.	G	.	.	LowGQX;LowMQ	END=149553269	GT	./.
chr1	149553270	.	G	.	.	LowGQX;LowMQ	END=149553271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:3:4
chr1	149553272	.	T	.	.	LowGQX;LowMQ	END=149553575	GT	./.
chr1	149676069	.	C	.	.	LowGQX	END=149676579	GT	./.
chr1	149754235	.	C	.	.	PASS	END=149754278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:25
chr1	149754279	.	T	.	.	PASS	END=149754378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:21
chr1	149754379	.	T	.	.	PASS	END=149754392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:28
chr1	149754646	.	T	.	.	LowMQ	END=149754652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:39:7
chr1	149754653	.	T	.	.	LowMQ	END=149754657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:36:7
chr1	149754658	.	C	.	.	LowMQ	END=149754663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:45:7
chr1	149754664	.	T	.	.	LowMQ	END=149754666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:54:8
chr1	149754667	.	T	.	.	LowMQ	END=149754715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:69:8
chr1	149754716	.	T	.	.	LowMQ	END=149754722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:66:9
chr1	149754723	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:242:40:9
chr1	149754724	.	A	.	.	LowMQ	END=149754731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:63:9
chr1	149754732	.	T	.	.	LowMQ	END=149754733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:57:9
chr1	149754734	.	G	.	.	LowMQ	END=149754747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:66:9
chr1	149754748	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:248:51:8
chr1	149754749	.	G	.	.	LowMQ	END=149754751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:69:8
chr1	149754752	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:243:39:8
chr1	149754753	.	G	.	.	LowMQ	END=149754754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:60:8
chr1	149754755	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:243:45:8
chr1	149754756	.	C	.	.	LowMQ	END=149754774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:54:8
chr1	149754775	.	T	.	.	LowMQ	END=149754794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:45:8
chr1	149754795	.	C	.	.	LowMQ	END=149754803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:45:9
chr1	149754804	.	G	.	.	LowMQ	END=149754808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:39:9
chr1	149754809	.	C	.	.	LowMQ	END=149754813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:45:9
chr1	149754814	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:135:39:8
chr1	149754815	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:128:27:8
chr1	149754816	.	C	.	.	LowMQ	END=149754817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:30:8
chr1	149754818	.	T	.	.	LowGQX;LowMQ	END=149754830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:18:7
chr1	149754831	.	A	.	.	LowGQX;LowMQ	END=149754837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:15:7
chr1	149754838	.	A	.	.	LowGQX;LowMQ	END=149754842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:12:7
chr1	149754843	.	G	.	.	LowGQX;LowMQ	END=149754845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:9:7
chr1	149754846	.	A	.	.	LowGQX;LowMQ	END=149754848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:12:7
chr1	149754849	.	G	.	.	LowGQX;LowMQ	END=149754852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:9:6
chr1	149755508	.	C	.	.	LowGQX	END=149755511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:22
chr1	149755512	.	T	.	.	LowGQX	END=149755521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:24
chr1	149755522	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:24
chr1	149755523	.	G	.	.	LowGQX	END=149755527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:24
chr1	149755528	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:24
chr1	149755529	.	T	.	.	LowGQX	END=149755531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:24
chr1	149755532	.	C	.	.	LowGQX	END=149755540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:24
chr1	149755541	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:24
chr1	149755542	.	T	.	.	LowGQX	END=149755543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:24
chr1	149755544	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:24
chr1	149755545	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:21:24
chr1	149755546	.	A	.	.	LowGQX	END=149755548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:24
chr1	149755549	.	C	.	.	LowGQX	END=149755561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:30
chr1	149755562	.	C	.	.	PASS	END=149755569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:33
chr1	149755570	.	G	.	.	PASS	END=149755588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:34
chr1	149755589	.	C	.	.	PASS	END=149755590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:36
chr1	149755591	.	C	.	.	PASS	END=149755598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:37
chr1	149755599	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:31:38
chr1	149755600	.	A	.	.	PASS	END=149755631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:38
chr1	149755632	.	C	.	.	PASS	END=149755647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:40
chr1	149755648	.	C	.	.	PASS	END=149755760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:40
chr1	149755761	.	C	.	.	PASS	END=149755799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:41
chr1	149755800	.	G	.	.	PASS	END=149755811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:42
chr1	149755812	.	A	.	.	PASS	END=149755836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:42
chr1	149755837	.	G	.	.	PASS	END=149755839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:44
chr1	149755840	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:12:47
chr1	149755841	.	G	.	.	PASS	END=149755858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:47
chr1	149755859	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:12:49
chr1	149755860	.	T	.	.	PASS	END=149755863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:50
chr1	149755864	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:45:50
chr1	149759871	.	T	.	.	LowGQX	END=149759877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:46
chr1	149759878	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:46
chr1	149759879	.	C	.	.	LowGQX	END=149759886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:44
chr1	149759887	.	A	.	.	PASS	END=149759890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:41
chr1	149759891	.	T	.	.	PASS	END=149759920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:40
chr1	149759921	.	G	.	.	PASS	END=149759924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:40
chr1	149759925	.	G	.	.	PASS	END=149759932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:40
chr1	149759933	.	C	.	.	PASS	END=149759935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:39
chr1	149759936	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:14:39
chr1	149759937	.	A	.	.	PASS	END=149759953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:38
chr1	149759954	.	T	.	.	PASS	END=149759967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:37
chr1	149759968	.	A	.	.	PASS	END=149759971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:36
chr1	149759972	.	C	.	.	PASS	END=149759984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:35
chr1	149759985	.	G	.	.	PASS	END=149759986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:35
chr1	149759987	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:34:35
chr1	149759988	.	A	.	.	PASS	END=149760005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:34
chr1	149760006	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:36:34
chr1	149760007	.	G	.	.	PASS	END=149760036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:34
chr1	149760037	.	C	.	.	PASS	END=149760084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:40
chr1	149760085	.	A	.	.	PASS	END=149760118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:46
chr1	149760119	.	T	.	.	PASS	END=149760132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:49
chr1	149760133	.	G	.	.	PASS	END=149760147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:53
chr1	149760148	.	A	.	.	PASS	END=149760178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:59
chr1	149760179	.	G	.	.	PASS	END=149760183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:59
chr1	149760184	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:59
chr1	149760185	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:59
chr1	149760186	.	A	.	.	PASS	END=149760188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:59
chr1	149760189	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:59
chr1	149760190	.	G	.	.	PASS	END=149760192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:59
chr1	149760193	.	A	.	.	LowGQX	END=149760199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:59
chr1	149760200	.	T	.	.	LowGQX	END=149760204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:58
chr1	149760205	.	G	.	42.02	LowGQX	DP=5;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.03:58:12
chr1	149760206	.	T	.	.	LowGQX	END=149760207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:54
chr1	149760208	.	C	.	.	LowGQX	END=149760209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:54
chr1	149760210	.	T	.	.	LowGQX	END=149760212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:53
chr1	149760213	.	C	.	42.03	LowGQX	DP=5;MQ=53;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.03:53:12
chr1	149760214	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:53
chr1	149761559	.	G	.	.	PASS	END=149761603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:52
chr1	149761604	.	C	.	.	PASS	END=149761626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:50
chr1	149761627	.	G	.	.	PASS	END=149761673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:48
chr1	149761674	.	C	.	.	PASS	END=149761737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:44
chr1	149761738	.	T	.	.	PASS	END=149761824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:277:99:40
chr1	149761825	.	T	.	.	PASS	END=149761876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:35
chr1	149761877	.	T	.	.	PASS	END=149761933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:29
chr1	149761934	.	G	.	.	PASS	END=149761945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:27
chr1	149762742	.	C	.	.	PASS	END=149762917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:33
chr1	149762918	.	G	.	207.43	PASS	DP=161;MQ=37;MQ0=22	GT:AD:DP:GQ:MQ:GQX	0/0:127:161:99:37:99
chr1	149762919	.	A	.	.	PASS	END=149762956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:32
chr1	149762957	.	G	.	.	PASS	END=149763074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:30
chr1	149763075	.	A	.	.	PASS	END=149763094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:33
chr1	149763095	.	T	.	.	PASS	END=149763105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:36
chr1	149763106	.	C	.	.	PASS	END=149763124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:40
chr1	149764090	.	C	.	.	LowGQX	END=149764772	GT	./.
chr1	149765478	.	T	.	.	LowGQX	END=149765643	GT	./.
chr1	149783496	.	T	.	.	LowGQX	END=149783880	GT	./.
chr1	149784824	.	C	.	.	PASS	END=149784833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:59
chr1	149784834	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:9:59
chr1	149784835	.	C	.	.	PASS	END=149784839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:59
chr1	149784840	.	C	.	.	PASS	END=149784842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:59
chr1	149784843	.	G	.	.	PASS	END=149784856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:59
chr1	149784857	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:59
chr1	149784858	.	A	.	.	PASS	END=149784864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:59
chr1	149784865	.	G	.	.	PASS	END=149784870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:58
chr1	149784871	.	G	.	.	PASS	END=149784875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:58
chr1	149784876	.	T	.	.	PASS	END=149784878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:57
chr1	149784879	.	T	.	.	PASS	END=149784886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:55
chr1	149784887	.	C	.	.	PASS	END=149784902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:51
chr1	149784903	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:44:50
chr1	149784904	.	G	.	.	PASS	END=149784905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:50
chr1	149784906	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:48:50
chr1	149784907	.	C	.	.	PASS	END=149784917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:49
chr1	149784918	.	C	.	.	PASS	END=149784922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:49
chr1	149784923	.	A	.	.	PASS	END=149784924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:54:49
chr1	149784925	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:78:49
chr1	149784926	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:47:49
chr1	149784927	.	G	.	.	PASS	END=149784931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:49
chr1	149784932	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:63:49
chr1	149784933	.	C	.	.	PASS	END=149784976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:47
chr1	149784977	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:69:49
chr1	149784978	.	T	.	.	PASS	END=149784987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:49
chr1	149784988	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:73:49
chr1	149784989	.	A	.	.	PASS	END=149785067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:49
chr1	149785068	.	T	.	.	PASS	END=149785075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:52
chr1	149785076	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:57:53
chr1	149785077	.	G	.	.	PASS	END=149785135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:86:46
chr1	149785136	.	C	.	.	PASS	END=149785142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:46
chr1	149785143	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:69:46
chr1	149785144	.	C	.	.	PASS	END=149785173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:42
chr1	149785174	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:54:42
chr1	149785175	.	A	.	.	PASS	END=149785200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:42
chr1	149785201	.	G	.	.	PASS	END=149785217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:42
chr1	149785218	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:60:41
chr1	149785219	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:42:41
chr1	149785220	.	T	.	.	PASS	END=149785229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:41
chr1	149785230	.	G	.	.	PASS	END=149785236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:48
chr1	149785237	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:3:49
chr1	149785238	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:39:49
chr1	149804236	.	G	.	.	LowGQX	END=149804565	GT	./.
chr1	149812306	.	G	.	.	LowGQX;LowMQ	END=149812735	GT	./.
chr1	149813860	.	C	.	.	LowGQX;LowMQ	END=149814043	GT	./.
chr1	149814044	.	G	.	.	LowGQX	END=149814108	GT	./.
chr1	149814109	.	C	.	.	LowGQX;LowMQ	END=149814268	GT	./.
chr1	149814269	.	A	.	.	LowGQX	.	GT	./.
chr1	149821759	.	T	.	.	LowGQX	END=149822224	GT	./.
chr1	149822225	.	G	.	.	LowGQX;LowMQ	END=149822347	GT	./.
chr1	149822668	.	T	.	.	LowGQX;LowMQ	END=149822745	GT	./.
chr1	149822746	.	T	.	.	LowGQX	END=149822749	GT	./.
chr1	149822750	.	C	.	.	LowGQX;LowMQ	END=149823077	GT	./.
chr1	149824204	.	G	.	.	LowGQX;LowMQ	END=149824633	GT	./.
chr1	149832373	.	C	.	.	LowGQX	END=149832395	GT	./.
chr1	149832396	.	A	.	.	LowGQX;LowMQ	END=149832546	GT	./.
chr1	149832547	.	T	.	.	LowGQX	END=149832702	GT	./.
chr1	149857808	.	A	.	.	LowGQX	END=149858192	GT	./.
chr1	149858523	.	T	.	.	LowGQX	END=149858552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	149858553	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	149858554	.	G	.	.	LowGQX	END=149858675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	149858676	.	A	.	.	LowGQX	END=149858721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:55
chr1	149858722	.	G	.	4.57	LowGQX	DP=5;MQ=55;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.01:55:0
chr1	149858723	.	G	.	.	LowGQX	END=149858743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:55
chr1	149858744	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:56
chr1	149858745	.	A	.	.	LowGQX	END=149858752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:56
chr1	149858753	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:56
chr1	149858754	.	C	.	.	LowGQX	END=149858771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:56
chr1	149858772	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:56
chr1	149858773	.	C	.	.	LowGQX	END=149858806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:55
chr1	149858807	.	A	.	.	LowGQX	END=149858825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:53
chr1	149858826	.	T	.	36.01	LowGQX	DP=4;MQ=53;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:53:6
chr1	149858827	.	C	.	.	LowGQX	END=149858878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr1	149858879	.	A	.	.	LowGQX	END=149858907	GT	./.
chr1	149858908	.	C	.	.	LowGQX	END=149858914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149858915	.	A	.	.	LowGQX	.	GT	./.
chr1	149858916	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149859072	.	A	.	.	LowGQX	END=149859129	GT	./.
chr1	149859130	.	G	.	.	LowGQX	END=149859203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149859204	.	A	.	.	LowGQX	.	GT	./.
chr1	149859205	.	C	.	.	LowGQX	END=149859333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149859334	.	C	.	.	LowGQX	END=149859377	GT	./.
chr1	149859378	.	C	.	.	LowGQX	END=149859428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149859429	.	G	.	.	LowGQX	.	GT	./.
chr1	149859430	.	C	.	.	LowGQX	END=149859442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149859443	.	T	.	.	LowGQX	.	GT	./.
chr1	149859444	.	C	.	.	LowGQX	END=149859468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871611	.	C	.	.	LowGQX	END=149871615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871616	.	C	.	.	LowGQX	END=149871617	GT	./.
chr1	149871618	.	G	.	.	LowGQX	END=149871620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871621	.	T	.	.	LowGQX	.	GT	./.
chr1	149871622	.	G	.	.	LowGQX	END=149871623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871624	.	G	.	.	LowGQX	.	GT	./.
chr1	149871625	.	C	.	.	LowGQX	END=149871628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871629	.	T	.	.	LowGQX	END=149871630	GT	./.
chr1	149871631	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871632	.	T	.	.	LowGQX	.	GT	./.
chr1	149871633	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871634	.	C	.	.	LowGQX	.	GT	./.
chr1	149871635	.	T	.	.	LowGQX	END=149871638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871639	.	T	.	.	LowGQX	.	GT	./.
chr1	149871640	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871641	.	T	.	.	LowGQX	END=149871642	GT	./.
chr1	149871643	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871644	.	T	.	.	LowGQX	.	GT	./.
chr1	149871645	.	C	.	.	LowGQX	END=149871650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871651	.	G	.	.	LowGQX	.	GT	./.
chr1	149871652	.	G	.	.	LowGQX	END=149871653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871654	.	T	.	.	LowGQX	.	GT	./.
chr1	149871655	.	G	.	.	LowGQX	END=149871663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871664	.	T	.	.	LowGQX	.	GT	./.
chr1	149871665	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871666	.	T	.	.	LowGQX	END=149871668	GT	./.
chr1	149871669	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871670	.	T	.	.	LowGQX	.	GT	./.
chr1	149871671	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871672	.	C	.	.	LowGQX	.	GT	./.
chr1	149871673	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871674	.	A	.	.	LowGQX	.	GT	./.
chr1	149871675	.	G	.	.	LowGQX	END=149871678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871679	.	A	.	.	LowGQX	END=149871861	GT	./.
chr1	149871862	.	C	.	.	LowGQX	END=149871866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871867	.	A	.	.	LowGQX	.	GT	./.
chr1	149871868	.	C	.	.	LowGQX	END=149871898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871899	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	149871900	.	G	.	.	LowGQX	END=149871958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149871959	.	A	.	.	LowGQX	.	GT	./.
chr1	149871960	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	149871961	.	A	.	.	LowGQX	END=149871962	GT	./.
chr1	149871963	.	C	.	.	LowGQX	END=149871965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	149871966	.	T	.	.	LowGQX	.	GT	./.
chr1	149871967	.	C	.	.	LowGQX	END=149871977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	149871978	.	T	.	.	LowGQX	.	GT	./.
chr1	149871979	.	A	.	.	LowGQX	END=149871986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	149871987	.	A	.	.	LowGQX	.	GT	./.
chr1	149871988	.	T	.	.	LowGQX	END=149871992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	149871993	.	G	.	.	LowGQX	.	GT	./.
chr1	149871994	.	G	.	.	LowGQX	END=149871995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	149871996	.	T	.	.	LowGQX	.	GT	./.
chr1	149871997	.	G	.	.	LowGQX	END=149872001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	149872002	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	149872003	.	A	.	.	LowGQX	END=149872010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	149872011	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	149872012	.	C	.	.	LowGQX	END=149872026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	149872027	.	A	.	.	LowGQX	.	GT	./.
chr1	149872028	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	149876564	.	C	.	.	LowGQX	END=149876751	GT	./.
chr1	149877427	.	A	.	.	LowGQX	END=149877460	GT	./.
chr1	149877461	.	C	.	.	LowGQX	END=149877593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	149878200	.	A	.	.	LowGQX	END=149878209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	149878210	.	C	.	.	LowGQX	.	GT	./.
chr1	149878211	.	T	.	.	LowGQX	END=149878253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149878254	.	C	.	.	LowGQX	END=149878255	GT	./.
chr1	149878256	.	C	.	.	LowGQX	END=149878281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149878282	.	A	.	.	LowGQX	END=149878442	GT	./.
chr1	149879250	.	A	.	.	LowGQX	END=149879254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149879255	.	T	.	.	LowGQX	.	GT	./.
chr1	149879256	.	G	.	.	LowGQX	END=149879275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149879276	.	T	.	.	LowGQX	.	GT	./.
chr1	149879277	.	G	.	.	LowGQX	END=149879281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149879282	.	T	.	.	LowGQX	END=149879387	GT	./.
chr1	149879592	.	A	.	.	LowGQX	END=149879643	GT	./.
chr1	149879644	.	G	.	.	LowGQX	END=149879743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149879744	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	149879745	.	T	.	.	LowGQX	END=149879760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	149880739	.	C	.	.	LowGQX	END=149880838	GT	./.
chr1	149881011	.	A	.	.	LowGQX	END=149881016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881017	.	C	.	.	LowGQX	.	GT	./.
chr1	149881018	.	C	.	.	LowGQX	END=149881019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881020	.	C	.	.	LowGQX	END=149881021	GT	./.
chr1	149881022	.	T	.	.	LowGQX	END=149881025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881026	.	C	.	.	LowGQX	.	GT	./.
chr1	149881027	.	T	.	.	LowGQX	END=149881029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881030	.	A	.	.	LowGQX	.	GT	./.
chr1	149881031	.	G	.	.	LowGQX	END=149881039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881040	.	C	.	.	LowGQX	END=149881043	GT	./.
chr1	149881044	.	C	.	.	LowGQX	END=149881049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881050	.	T	.	.	LowGQX	.	GT	./.
chr1	149881051	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881052	.	G	.	.	LowGQX	END=149881054	GT	./.
chr1	149881055	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881056	.	C	.	.	LowGQX	END=149881057	GT	./.
chr1	149881058	.	G	.	.	LowGQX	END=149881059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881060	.	T	.	.	LowGQX	END=149881061	GT	./.
chr1	149881062	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881063	.	C	.	.	LowGQX	END=149881064	GT	./.
chr1	149881065	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881066	.	T	.	.	LowGQX	.	GT	./.
chr1	149881067	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881068	.	T	.	.	LowGQX	END=149881069	GT	./.
chr1	149881070	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881071	.	G	.	.	LowGQX	.	GT	./.
chr1	149881072	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881073	.	C	.	.	LowGQX	END=149881074	GT	./.
chr1	149881075	.	G	.	.	LowGQX	END=149881076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881077	.	A	.	.	LowGQX	END=149881081	GT	./.
chr1	149881082	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881083	.	A	.	.	LowGQX	.	GT	./.
chr1	149881084	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881085	.	C	.	.	LowGQX	END=149881088	GT	./.
chr1	149881089	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881090	.	C	.	.	LowGQX	END=149881091	GT	./.
chr1	149881092	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881093	.	C	.	.	LowGQX	END=149881095	GT	./.
chr1	149881096	.	C	.	.	LowGQX	END=149881097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881098	.	T	.	.	LowGQX	.	GT	./.
chr1	149881099	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881100	.	A	.	.	LowGQX	END=149881101	GT	./.
chr1	149881102	.	G	.	.	LowGQX	END=149881104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881105	.	T	.	.	LowGQX	.	GT	./.
chr1	149881106	.	C	.	.	LowGQX	END=149881107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881108	.	T	.	.	LowGQX	END=149881110	GT	./.
chr1	149881111	.	T	.	.	LowGQX	END=149881112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881113	.	A	.	.	LowGQX	END=149881115	GT	./.
chr1	149881116	.	T	.	.	LowGQX	END=149881119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881120	.	T	.	.	LowGQX	END=149881122	GT	./.
chr1	149881123	.	C	.	.	LowGQX	END=149881124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881125	.	T	.	.	LowGQX	.	GT	./.
chr1	149881348	.	C	.	.	LowGQX	END=149881357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881358	.	A	.	.	LowGQX	.	GT	./.
chr1	149881359	.	C	.	.	LowGQX	END=149881373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881374	.	T	.	.	LowGQX	.	GT	./.
chr1	149881375	.	C	.	.	LowGQX	END=149881383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149881384	.	C	.	.	LowGQX	END=149881447	GT	./.
chr1	149882120	.	A	.	.	LowGQX	END=149882122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	149882123	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	149882124	.	C	.	.	LowGQX	END=149882141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	149882142	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	149882143	.	C	.	.	LowGQX	END=149882149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	149882150	.	T	.	.	LowGQX	END=149882257	GT	./.
chr1	149882376	.	A	.	.	LowGQX	END=149882531	GT	./.
chr1	149883350	.	A	.	.	LowGQX	END=149883534	GT	./.
chr1	149884769	.	A	.	.	LowGQX	END=149884825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149884826	.	C	.	.	LowGQX	.	GT	./.
chr1	149884827	.	A	.	.	LowGQX	END=149884916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149884917	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	149884918	.	A	.	.	LowGQX	END=149884945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149884946	.	G	.	.	LowGQX	.	GT	./.
chr1	149884947	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149884948	.	C	.	.	LowGQX	.	GT	./.
chr1	149884949	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149884950	.	A	.	.	LowGQX	.	GT	./.
chr1	149884951	.	G	.	.	LowGQX	END=149884952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149884953	.	T	.	.	LowGQX	.	GT	./.
chr1	149884954	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149884955	.	T	.	.	LowGQX	.	GT	./.
chr1	149884956	.	T	.	.	LowGQX	END=149884960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149884961	.	T	.	.	LowGQX	END=149884962	GT	./.
chr1	149884963	.	C	.	.	LowGQX	END=149884965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149884966	.	T	.	.	LowGQX	.	GT	./.
chr1	149884967	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149884968	.	C	.	.	LowGQX	.	GT	./.
chr1	149884969	.	G	.	.	LowGQX	END=149884972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149884973	.	T	.	.	LowGQX	.	GT	./.
chr1	149884974	.	T	.	.	LowGQX	END=149884977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149884978	.	C	.	.	LowGQX	END=149884986	GT	./.
chr1	149884987	.	G	.	.	LowGQX	END=149884988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149884989	.	C	.	.	LowGQX	.	GT	./.
chr1	149884990	.	C	.	.	LowGQX	END=149884996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149884997	.	G	.	.	LowGQX	.	GT	./.
chr1	149884998	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149884999	.	G	.	.	LowGQX	.	GT	./.
chr1	149885000	.	A	.	.	LowGQX	END=149885001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885002	.	C	.	.	LowGQX	.	GT	./.
chr1	149885003	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885004	.	T	.	.	LowGQX	.	GT	./.
chr1	149885005	.	C	.	.	LowGQX	END=149885016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885017	.	A	.	.	LowGQX	END=149885018	GT	./.
chr1	149885019	.	C	.	.	LowGQX	END=149885025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885026	.	T	.	.	LowGQX	.	GT	./.
chr1	149885027	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885028	.	A	.	.	LowGQX	.	GT	./.
chr1	149885029	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885030	.	T	.	.	LowGQX	.	GT	./.
chr1	149885031	.	C	.	.	LowGQX	END=149885038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885039	.	G	.	.	LowGQX	.	GT	./.
chr1	149885040	.	G	.	.	LowGQX	END=149885051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885052	.	G	.	.	LowGQX	.	GT	./.
chr1	149885053	.	C	.	.	LowGQX	END=149885071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885072	.	C	.	.	LowGQX	.	GT	./.
chr1	149885073	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885074	.	C	.	.	LowGQX	.	GT	./.
chr1	149885075	.	A	.	.	LowGQX	END=149885084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885085	.	C	.	.	LowGQX	.	GT	./.
chr1	149885086	.	G	.	.	LowGQX	END=149885100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885101	.	A	.	.	LowGQX	.	GT	./.
chr1	149885102	.	T	.	.	LowGQX	END=149885104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885105	.	C	.	.	LowGQX	END=149885106	GT	./.
chr1	149885107	.	C	.	.	LowGQX	END=149885115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885116	.	T	.	.	LowGQX	END=149885117	GT	./.
chr1	149885118	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885119	.	C	.	.	LowGQX	END=149885120	GT	./.
chr1	149885121	.	T	.	.	LowGQX	END=149885136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885137	.	C	.	.	LowGQX	END=149885287	GT	./.
chr1	149885288	.	G	.	.	LowGQX	END=149885296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885297	.	C	.	.	LowGQX	.	GT	./.
chr1	149885298	.	T	.	.	LowGQX	END=149885319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885320	.	G	.	.	LowGQX	.	GT	./.
chr1	149885321	.	C	.	.	LowGQX	END=149885329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885330	.	T	.	.	LowGQX	.	GT	./.
chr1	149885331	.	T	.	.	LowGQX	END=149885368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885369	.	C	.	.	LowGQX	.	GT	./.
chr1	149885370	.	C	.	.	LowGQX	END=149885372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149885373	.	T	.	.	LowGQX	.	GT	./.
chr1	149885374	.	C	.	.	LowGQX	END=149885394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149895362	.	C	.	.	PASS	END=149895383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	149895384	.	G	.	.	PASS	END=149895551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	149895552	.	G	.	.	PASS	END=149895573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	149895574	.	G	.	.	PASS	END=149895601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	149895602	.	A	.	.	PASS	END=149895623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:281:99:60
chr1	149895720	.	A	.	.	PASS	END=149895792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:274:99:60
chr1	149895793	.	G	.	.	PASS	END=149895811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	149895812	.	T	.	297.62	PASS	DP=244;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:175:244:99:60:99
chr1	149895813	.	C	.	.	PASS	END=149895960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	149897546	.	T	.	.	PASS	END=149897562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	149897563	.	G	.	.	PASS	END=149897582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	149897583	.	A	.	.	PASS	END=149897630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	149897631	.	A	.	.	PASS	END=149897654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	149897655	.	G	.	.	PASS	END=149897679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	149897680	.	G	.	.	PASS	END=149897729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	149897730	.	G	.	.	PASS	END=149897809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	149897810	.	C	.	.	PASS	END=149897835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	149897836	.	C	.	.	PASS	END=149897863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	149897864	.	T	.	.	PASS	END=149897903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	149897904	.	G	.	.	PASS	END=149897908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	149897909	.	T	.	180.48	PASS	DP=125;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:93:125:99:60:99
chr1	149897910	.	G	.	.	PASS	END=149897944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	149898266	.	A	.	.	PASS	END=149898362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	149898363	.	G	.	.	PASS	END=149898422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	149898423	.	C	.	.	PASS	END=149898466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	149898467	.	G	.	.	PASS	END=149898691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	149898692	.	T	.	.	PASS	END=149898768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	149898769	.	A	.	.	PASS	END=149898794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	149898795	.	T	.	.	PASS	END=149898812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	149899056	.	A	.	.	PASS	END=149899162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	149899163	.	G	.	.	PASS	END=149899178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	149899179	.	A	.	.	PASS	END=149899186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	149899187	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:67:60
chr1	149899188	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:99:60
chr1	149899585	.	T	.	.	PASS	END=149899622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	149899623	.	T	.	.	PASS	END=149899684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	149900727	.	G	.	.	LowGQX	END=149900763	GT	./.
chr1	149900764	.	A	.	.	LowGQX	END=149900826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149901020	.	T	.	.	LowGQX	END=149901211	GT	./.
chr1	149901513	.	A	.	.	LowGQX	END=149901810	GT	./.
chr1	149902255	.	A	.	.	LowGQX	END=149902423	GT	./.
chr1	149902424	.	G	.	.	LowGQX	END=149902441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149902682	.	A	.	.	LowGQX	END=149902859	GT	./.
chr1	149903120	.	A	.	.	LowGQX	END=149903150	GT	./.
chr1	149903151	.	C	.	.	LowGQX	END=149903305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149903306	.	C	.	.	LowGQX	.	GT	./.
chr1	149903307	.	G	.	.	LowGQX	END=149903311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149903312	.	C	.	.	LowGQX	.	GT	./.
chr1	149903313	.	C	.	.	LowGQX	END=149903317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149903318	.	T	.	.	LowGQX	.	GT	./.
chr1	149903319	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149903320	.	T	.	.	LowGQX	.	GT	./.
chr1	149903822	.	A	.	.	LowGQX	END=149903921	GT	./.
chr1	149904140	.	A	.	.	LowGQX	END=149904239	GT	./.
chr1	149905297	.	A	.	.	LowGQX	END=149905425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149905498	.	C	.	.	LowGQX	END=149905531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149905532	.	T	.	.	LowGQX	.	GT	./.
chr1	149905533	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149905534	.	T	.	.	LowGQX	.	GT	./.
chr1	149905535	.	A	.	.	LowGQX	END=149905545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149905546	.	C	.	.	LowGQX	END=149905547	GT	./.
chr1	149905548	.	C	.	.	LowGQX	END=149905551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149905552	.	G	.	.	LowGQX	.	GT	./.
chr1	149905553	.	G	.	.	LowGQX	END=149905555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149905556	.	A	.	.	LowGQX	.	GT	./.
chr1	149905557	.	A	.	.	LowGQX	END=149905564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149905565	.	G	.	.	LowGQX	.	GT	./.
chr1	149905566	.	C	.	.	LowGQX	END=149905572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149905573	.	G	.	.	LowGQX	END=149905574	GT	./.
chr1	149905575	.	T	.	.	LowGQX	END=149905587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149905588	.	A	.	.	LowGQX	.	GT	./.
chr1	149905589	.	G	.	.	LowGQX	END=149905597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149905742	.	A	.	.	LowGQX	END=149905765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149905766	.	A	.	.	LowGQX	END=149905841	GT	./.
chr1	149906082	.	A	.	.	LowGQX	END=149906221	GT	./.
chr1	149906331	.	T	.	.	LowGQX	END=149906430	GT	./.
chr1	149906877	.	A	.	.	LowGQX	END=149907023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	149907173	.	A	.	.	LowGQX	END=149907272	GT	./.
chr1	149907475	.	A	.	.	LowGQX	END=149907598	GT	./.
chr1	149908034	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	149908035	.	G	.	.	LowGQX	END=149908107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	149908108	.	A	G	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr1	149908109	.	T	.	.	LowGQX	END=149908133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	149908398	.	T	.	.	LowGQX	END=149908613	GT	./.
chr1	149915754	.	G	.	.	LowGQX	END=149916966	GT	./.
chr1	149919145	.	T	.	.	LowGQX	END=149919167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149919168	.	A	.	.	LowGQX	END=149919244	GT	./.
chr1	149920869	.	A	.	.	LowGQX	END=149920987	GT	./.
chr1	149921530	.	A	.	.	LowGQX	END=149921683	GT	./.
chr1	149921995	.	A	.	.	LowGQX	END=149922126	GT	./.
chr1	149931601	.	A	.	.	LowGQX	END=149931717	GT	./.
chr1	149936111	.	T	.	.	LowGQX	END=149936276	GT	./.
chr1	149937700	.	A	.	.	LowGQX	END=149937716	GT	./.
chr1	149937717	.	G	.	.	LowGQX	END=149937805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149939217	.	A	.	.	LowGQX	END=149939448	GT	./.
chr1	149942989	.	A	.	.	LowGQX	END=149943082	GT	./.
chr1	149943083	.	C	.	.	LowGQX	END=149943087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149943088	.	C	.	.	LowGQX	.	GT	./.
chr1	149943089	.	C	.	.	LowGQX	END=149943093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149943094	.	A	.	.	LowGQX	.	GT	./.
chr1	149943095	.	C	.	.	LowGQX	END=149943115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149943116	.	C	.	.	LowGQX	.	GT	./.
chr1	149943117	.	C	.	.	LowGQX	END=149943121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149943122	.	T	.	.	LowGQX	.	GT	./.
chr1	149943123	.	G	.	.	LowGQX	END=149943157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149943158	.	G	.	.	LowGQX	.	GT	./.
chr1	149943159	.	C	.	.	LowGQX	END=149943160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149943161	.	T	.	.	LowGQX	.	GT	./.
chr1	149943162	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149943163	.	C	.	.	LowGQX	.	GT	./.
chr1	149943164	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149943165	.	C	.	.	LowGQX	END=149943166	GT	./.
chr1	149943167	.	T	.	.	LowGQX	END=149943174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149943175	.	C	.	.	LowGQX	.	GT	./.
chr1	149943176	.	T	.	.	LowGQX	END=149943181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149949354	.	T	.	.	LowGQX	END=149949355	GT	./.
chr1	149949356	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149949357	.	T	.	.	LowGQX	.	GT	./.
chr1	149949358	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	149949359	.	A	.	.	LowGQX	.	GT	./.
chr1	149949360	.	C	.	.	LowGQX	END=149949453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150039912	.	G	.	.	LowGQX	END=150040011	GT	./.
chr1	150040685	.	A	.	.	LowGQX	END=150040823	GT	./.
chr1	150044214	.	C	.	.	LowGQX	END=150044254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150044255	.	A	.	.	LowGQX	END=150044313	GT	./.
chr1	150048301	.	T	.	.	LowGQX	END=150048400	GT	./.
chr1	150048979	.	G	.	.	LowGQX	END=150049078	GT	./.
chr1	150049170	.	A	.	.	LowGQX	END=150049311	GT	./.
chr1	150049711	.	A	.	.	LowGQX	END=150049900	GT	./.
chr1	150053391	.	A	.	.	LowGQX	END=150053601	GT	./.
chr1	150053964	.	A	.	.	LowGQX	END=150053999	GT	./.
chr1	150054000	.	A	.	.	LowGQX	END=150054002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150054003	.	T	.	.	LowGQX	.	GT	./.
chr1	150054004	.	A	.	.	LowGQX	END=150054011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150054012	.	T	.	.	LowGQX	.	GT	./.
chr1	150054013	.	C	.	.	LowGQX	END=150054028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150054029	.	A	.	.	LowGQX	.	GT	./.
chr1	150054030	.	A	.	.	LowGQX	END=150054035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150054036	.	A	.	.	LowGQX	END=150054037	GT	./.
chr1	150054038	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150054039	.	C	.	.	LowGQX	.	GT	./.
chr1	150054040	.	A	.	.	LowGQX	END=150054046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150054047	.	C	.	.	LowGQX	.	GT	./.
chr1	150054048	.	A	.	.	LowGQX	END=150054054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150054055	.	A	.	.	LowGQX	.	GT	./.
chr1	150054056	.	C	.	.	LowGQX	END=150054058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150054059	.	G	.	.	LowGQX	.	GT	./.
chr1	150054060	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150054061	.	A	.	.	LowGQX	END=150054062	GT	./.
chr1	150054063	.	C	.	.	LowGQX	END=150054064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150054065	.	A	.	.	LowGQX	.	GT	./.
chr1	150054066	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150054067	.	A	.	.	LowGQX	.	GT	./.
chr1	150054068	.	G	.	.	LowGQX	END=150054072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150054073	.	C	.	.	LowGQX	.	GT	./.
chr1	150054074	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150054075	.	T	.	.	LowGQX	END=150054076	GT	./.
chr1	150054077	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150054078	.	A	.	.	LowGQX	.	GT	./.
chr1	150054079	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150054080	.	G	.	.	LowGQX	.	GT	./.
chr1	150054081	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150054798	.	A	.	.	LowGQX	END=150054853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150054854	.	C	.	.	LowGQX	END=150054969	GT	./.
chr1	150064029	.	A	.	.	LowGQX	END=150064040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064041	.	G	.	.	LowGQX	.	GT	./.
chr1	150064042	.	G	.	.	LowGQX	END=150064044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064045	.	T	.	.	LowGQX	.	GT	./.
chr1	150064046	.	C	.	.	LowGQX	END=150064054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064055	.	C	.	.	LowGQX	.	GT	./.
chr1	150064056	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064057	.	C	.	.	LowGQX	.	GT	./.
chr1	150064058	.	A	.	.	LowGQX	END=150064062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064063	.	G	.	.	LowGQX	.	GT	./.
chr1	150064064	.	A	.	.	LowGQX	END=150064066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064067	.	G	.	.	LowGQX	.	GT	./.
chr1	150064068	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064069	.	G	.	.	LowGQX	.	GT	./.
chr1	150064070	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064071	.	T	.	.	LowGQX	.	GT	./.
chr1	150064072	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064073	.	G	.	.	LowGQX	END=150064074	GT	./.
chr1	150064075	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064076	.	G	.	.	LowGQX	.	GT	./.
chr1	150064077	.	C	.	.	LowGQX	END=150064078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064079	.	G	.	.	LowGQX	END=150064080	GT	./.
chr1	150064081	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064082	.	C	.	.	LowGQX	END=150064083	GT	./.
chr1	150064084	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064085	.	C	.	.	LowGQX	END=150064088	GT	./.
chr1	150064089	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064090	.	G	.	.	LowGQX	.	GT	./.
chr1	150064091	.	A	.	.	LowGQX	END=150064092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064093	.	G	.	.	LowGQX	.	GT	./.
chr1	150064094	.	C	.	.	LowGQX	END=150064096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064097	.	T	.	.	LowGQX	.	GT	./.
chr1	150064098	.	A	.	.	LowGQX	END=150064100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064101	.	C	.	.	LowGQX	.	GT	./.
chr1	150064102	.	T	.	.	LowGQX	END=150064107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064108	.	T	.	.	LowGQX	.	GT	./.
chr1	150064109	.	T	.	.	LowGQX	END=150064110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150064111	.	T	.	.	LowGQX	.	GT	./.
chr1	150064112	.	G	.	.	LowGQX	END=150064125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064126	.	C	.	.	LowGQX	.	GT	./.
chr1	150064127	.	A	.	.	LowGQX	END=150064131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064132	.	C	.	.	LowGQX	.	GT	./.
chr1	150064133	.	C	.	.	LowGQX	END=150064135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064136	.	C	.	.	LowGQX	.	GT	./.
chr1	150064137	.	C	.	.	LowGQX	END=150064138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064139	.	G	.	.	LowGQX	.	GT	./.
chr1	150064140	.	G	.	.	LowGQX	END=150064143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064144	.	A	.	.	LowGQX	.	GT	./.
chr1	150064145	.	A	.	.	LowGQX	END=150064149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064150	.	G	.	.	LowGQX	.	GT	./.
chr1	150064151	.	G	.	.	LowGQX	END=150064157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064158	.	G	.	.	LowGQX	.	GT	./.
chr1	150064159	.	G	.	.	LowGQX	END=150064162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064163	.	A	.	.	LowGQX	END=150064165	GT	./.
chr1	150064166	.	G	.	.	LowGQX	END=150064169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064170	.	T	.	.	LowGQX	.	GT	./.
chr1	150064171	.	T	.	.	LowGQX	END=150064191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150064394	.	A	.	.	LowGQX	END=150064505	GT	./.
chr1	150065621	.	A	.	.	LowGQX	END=150065746	GT	./.
chr1	150070911	.	C	.	.	LowGQX	END=150071010	GT	./.
chr1	150082609	.	A	.	.	LowGQX	END=150082667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150082668	.	A	.	.	LowGQX	END=150082732	GT	./.
chr1	150082733	.	A	.	.	LowGQX	END=150082739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150082740	.	A	.	.	LowGQX	.	GT	./.
chr1	150082741	.	A	.	.	LowGQX	END=150082744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150114953	.	C	.	.	LowGQX	END=150114982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150114983	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	150114984	.	A	.	.	LowGQX	END=150114987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150114988	.	A	.	.	LowGQX	.	GT	./.
chr1	150114989	.	C	.	.	LowGQX	END=150114994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150114995	.	T	.	.	LowGQX	END=150114998	GT	./.
chr1	150114999	.	T	.	.	LowGQX	END=150115013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150115014	.	A	.	.	LowGQX	.	GT	./.
chr1	150115015	.	G	.	.	LowGQX	END=150115021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150115022	.	G	.	.	LowGQX	.	GT	./.
chr1	150115023	.	G	.	.	LowGQX	END=150115026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150115027	.	C	.	.	LowGQX	.	GT	./.
chr1	150115028	.	A	.	.	LowGQX	END=150115035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150115036	.	C	.	.	LowGQX	.	GT	./.
chr1	150115037	.	C	.	.	LowGQX	END=150115041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150115042	.	C	.	.	LowGQX	END=150115043	GT	./.
chr1	150115044	.	T	.	.	LowGQX	END=150115051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150115052	.	A	.	.	LowGQX	END=150115074	GT	./.
chr1	150115075	.	C	.	.	LowGQX	END=150115112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150116885	.	A	.	.	LowGQX	END=150117099	GT	./.
chr1	150122353	.	C	.	.	LowGQX	END=150122512	GT	./.
chr1	150123100	.	A	.	.	LowGQX	END=150123209	GT	./.
chr1	150123210	.	G	.	.	LowGQX	END=150123250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150128258	.	A	.	.	LowGQX	END=150128402	GT	./.
chr1	150129103	.	A	.	.	LowGQX	END=150129211	GT	./.
chr1	150129516	.	G	.	.	LowGQX	END=150129682	GT	./.
chr1	150131012	.	A	.	.	LowGQX	.	GT	./.
chr1	150131013	.	G	.	.	LowGQX	END=150131172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150131173	.	C	.	.	LowGQX	END=150131720	GT	./.
chr1	150192979	.	G	.	.	LowGQX	END=150193078	GT	./.
chr1	150195510	.	A	.	.	LowGQX	END=150195549	GT	./.
chr1	150195550	.	T	.	.	LowGQX	END=150195570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150195571	.	A	.	.	LowGQX	.	GT	./.
chr1	150195572	.	A	.	.	LowGQX	END=150195620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150198928	.	G	.	.	LowGQX	END=150199129	GT	./.
chr1	150201373	.	A	.	.	LowGQX	END=150201395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201396	.	A	.	.	LowGQX	.	GT	./.
chr1	150201397	.	A	.	.	LowGQX	END=150201408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201409	.	A	.	.	LowGQX	.	GT	./.
chr1	150201410	.	T	.	.	LowGQX	END=150201438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201439	.	A	.	.	LowGQX	.	GT	./.
chr1	150201440	.	T	.	.	LowGQX	END=150201451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201452	.	T	.	.	LowGQX	.	GT	./.
chr1	150201453	.	C	.	.	LowGQX	END=150201455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201456	.	A	.	.	LowGQX	.	GT	./.
chr1	150201457	.	T	.	.	LowGQX	END=150201467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201468	.	A	.	.	LowGQX	.	GT	./.
chr1	150201469	.	T	.	.	LowGQX	END=150201477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201478	.	C	.	.	LowGQX	.	GT	./.
chr1	150201479	.	T	.	.	LowGQX	END=150201490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201491	.	A	.	.	LowGQX	.	GT	./.
chr1	150201492	.	A	.	.	LowGQX	END=150201496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201497	.	C	.	.	LowGQX	.	GT	./.
chr1	150201498	.	T	.	.	LowGQX	END=150201507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201508	.	A	.	.	LowGQX	.	GT	./.
chr1	150201509	.	T	.	.	LowGQX	END=150201512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201513	.	C	.	.	LowGQX	.	GT	./.
chr1	150201514	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201515	.	A	.	.	LowGQX	END=150201518	GT	./.
chr1	150201519	.	T	.	.	LowGQX	END=150201520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201521	.	G	.	.	LowGQX	.	GT	./.
chr1	150201522	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201523	.	G	.	.	LowGQX	END=150201528	GT	./.
chr1	150201529	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201530	.	C	.	.	LowGQX	.	GT	./.
chr1	150201531	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201532	.	G	.	.	LowGQX	.	GT	./.
chr1	150201533	.	T	.	.	LowGQX	END=150201537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201538	.	C	.	.	LowGQX	.	GT	./.
chr1	150201539	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201540	.	G	.	.	LowGQX	END=150201543	GT	./.
chr1	150201544	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201545	.	A	.	.	LowGQX	END=150201546	GT	./.
chr1	150201547	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201548	.	C	.	.	LowGQX	.	GT	./.
chr1	150201549	.	T	.	.	LowGQX	END=150201551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201552	.	T	.	.	LowGQX	END=150201553	GT	./.
chr1	150201554	.	A	.	.	LowGQX	END=150201556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201557	.	T	.	.	LowGQX	.	GT	./.
chr1	150201558	.	T	.	.	LowGQX	END=150201560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201561	.	T	.	.	LowGQX	END=150201562	GT	./.
chr1	150201563	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201564	.	G	.	.	LowGQX	END=150201566	GT	./.
chr1	150201567	.	T	.	.	LowGQX	END=150201569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150201570	.	G	.	.	LowGQX	END=150201572	GT	./.
chr1	150202904	.	A	.	.	LowGQX	END=150203030	GT	./.
chr1	150204113	.	A	.	.	LowGQX	END=150204191	GT	./.
chr1	150204192	.	C	.	.	LowGQX	END=150204302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150208058	.	C	.	.	LowGQX	END=150208123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150208124	.	T	.	.	LowGQX	END=150208157	GT	./.
chr1	150230502	.	C	.	.	LowGQX	.	GT	./.
chr1	150230503	.	T	.	.	LowGQX	END=150230529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150230530	.	T	.	.	LowGQX	.	GT	./.
chr1	150230531	.	T	.	.	LowGQX	END=150230591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150230592	.	A	.	.	LowGQX	END=150230601	GT	./.
chr1	150232524	.	C	.	.	LowGQX	END=150232730	GT	./.
chr1	150233856	.	A	.	.	LowGQX	END=150233930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150233931	.	T	.	.	LowGQX	.	GT	./.
chr1	150233932	.	C	.	.	LowGQX	END=150234039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150234524	.	T	.	.	LowGQX	END=150234701	GT	./.
chr1	150234922	.	A	.	.	LowGQX	END=150235021	GT	./.
chr1	150235187	.	T	.	.	LowGQX	END=150235286	GT	./.
chr1	150235439	.	A	.	.	LowGQX	END=150235600	GT	./.
chr1	150235696	.	A	.	.	LowGQX	END=150235728	GT	./.
chr1	150235729	.	C	.	.	LowGQX	END=150235820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150236019	.	G	.	.	LowGQX	END=150236118	GT	./.
chr1	150236186	.	C	.	.	LowGQX	END=150236285	GT	./.
chr1	150236977	.	C	.	.	LowGQX	END=150237076	GT	./.
chr1	150238513	.	G	.	.	PASS	END=150238547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	150238548	.	G	.	.	PASS	END=150238612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	150238920	.	A	.	.	PASS	END=150238930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	150238931	.	A	.	.	PASS	END=150239047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	150239048	.	C	.	.	PASS	END=150239058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	150239473	.	A	.	.	PASS	END=150239478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:93:60
chr1	150239479	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:68:60
chr1	150239480	.	C	.	.	PASS	END=150239496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	150239497	.	C	.	.	PASS	END=150239517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	150239518	.	G	.	.	PASS	END=150239604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	150239754	.	A	.	.	PASS	END=150239789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	150239790	.	G	.	.	PASS	END=150239879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	150239880	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:86:99:60
chr1	150240103	.	T	.	.	PASS	END=150240202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	150240355	.	A	.	.	PASS	END=150240412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	150240413	.	A	.	.	PASS	END=150240459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	150240460	.	C	.	.	PASS	END=150240478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	150240479	.	G	.	.	PASS	END=150240482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	150240483	.	C	.	.	PASS	END=150240492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	150240493	.	A	.	.	PASS	END=150240505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr1	150240506	.	G	.	.	PASS	END=150240529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	150241096	.	A	.	.	PASS	END=150241108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	150241109	.	G	.	.	PASS	END=150241211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	150241212	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:79:99:60
chr1	150245194	.	T	.	.	LowGQX	END=150245293	GT	./.
chr1	150246482	.	C	.	.	LowGQX	END=150246483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150246484	.	C	.	.	LowGQX	.	GT	./.
chr1	150246485	.	C	.	.	LowGQX	END=150246494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150246495	.	G	.	.	LowGQX	.	GT	./.
chr1	150246496	.	A	.	.	LowGQX	END=150246520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150246521	.	A	.	.	LowGQX	.	GT	./.
chr1	150246522	.	G	.	.	LowGQX	END=150246543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150246544	.	T	.	.	LowGQX	.	GT	./.
chr1	150246545	.	C	.	.	LowGQX	END=150246551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150246552	.	T	.	.	LowGQX	END=150246577	GT	./.
chr1	150246578	.	G	.	.	LowGQX	END=150246581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150248130	.	A	.	.	LowGQX	END=150248229	GT	./.
chr1	150248928	.	A	.	.	LowGQX	END=150248948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150248949	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	150248950	.	A	.	.	LowGQX	END=150248953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	150248954	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	150248955	.	A	.	.	LowGQX	END=150248966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	150248967	.	C	A	14.92	LowGQ;LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=4.97;ReadPosRankSum=0.736;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,2:3:3.01:45,3,0:60:3:0.667
chr1	150248968	.	T	.	.	LowGQX	END=150249003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150249004	.	G	.	.	LowGQX	.	GT	./.
chr1	150249005	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150249006	.	A	.	.	LowGQX	END=150249007	GT	./.
chr1	150249008	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150249009	.	C	.	.	LowGQX	.	GT	./.
chr1	150249010	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150249011	.	G	.	.	LowGQX	END=150249012	GT	./.
chr1	150249013	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150249014	.	A	.	.	LowGQX	END=150249015	GT	./.
chr1	150249016	.	T	.	.	LowGQX	END=150249017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150249018	.	T	.	.	LowGQX	END=150249019	GT	./.
chr1	150249020	.	A	.	.	LowGQX	END=150249021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150249022	.	A	.	.	LowGQX	.	GT	./.
chr1	150249023	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150249024	.	C	.	.	LowGQX	.	GT	./.
chr1	150249025	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150249026	.	G	.	.	LowGQX	.	GT	./.
chr1	150249027	.	T	.	.	LowGQX	END=150249029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150249030	.	C	.	.	LowGQX	.	GT	./.
chr1	150249031	.	A	.	.	LowGQX	END=150249032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150249033	.	C	.	.	LowGQX	END=150249035	GT	./.
chr1	150249036	.	A	.	.	LowGQX	END=150249038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150249039	.	C	.	.	LowGQX	END=150249040	GT	./.
chr1	150249041	.	G	.	.	LowGQX	END=150249042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150252051	.	C	.	.	LowGQX	END=150252082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150252083	.	T	.	.	LowGQX	.	GT	./.
chr1	150252084	.	T	.	.	LowGQX	END=150252119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150252120	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	150252121	.	T	.	.	LowGQX	END=150252129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150252130	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	150252131	.	G	.	.	LowGQX	END=150252134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150252135	.	A	.	.	LowGQX	.	GT	./.
chr1	150252136	.	T	.	.	LowGQX	END=150252137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150252138	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	150252139	.	A	.	.	LowGQX	END=150252142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150252143	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	150252144	.	A	.	.	LowGQX	END=150252151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150253229	.	T	.	.	LowGQX	END=150253328	GT	./.
chr1	150255676	.	C	.	.	LowGQX	END=150255990	GT	./.
chr1	150255991	.	G	.	.	LowGQX	END=150256045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150256143	.	G	.	.	LowGQX	END=150256155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150256156	.	C	.	.	LowGQX	END=150256362	GT	./.
chr1	150256826	.	C	.	.	LowGQX	END=150256889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150256890	.	G	.	.	LowGQX	END=150256925	GT	./.
chr1	150257005	.	A	.	.	LowGQX	END=150257120	GT	./.
chr1	150258840	.	A	.	.	LowGQX	END=150259368	GT	./.
chr1	150266779	.	C	.	.	LowGQX	END=150266878	GT	./.
chr1	150273647	.	G	.	.	LowGQX	END=150273675	GT	./.
chr1	150273676	.	A	.	.	LowGQX	END=150273705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150273706	.	A	.	.	LowGQX	.	GT	./.
chr1	150273707	.	G	.	.	LowGQX	END=150273730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150273731	.	A	.	.	LowGQX	END=150273732	GT	./.
chr1	150273733	.	C	.	.	LowGQX	END=150273740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150273741	.	A	.	.	LowGQX	.	GT	./.
chr1	150273742	.	C	.	.	LowGQX	END=150273752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150273753	.	C	.	.	LowGQX	.	GT	./.
chr1	150273754	.	T	.	.	LowGQX	END=150273758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150273759	.	C	.	.	LowGQX	END=150273760	GT	./.
chr1	150273761	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150273762	.	A	.	.	LowGQX	.	GT	./.
chr1	150273763	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150273764	.	A	.	.	LowGQX	.	GT	./.
chr1	150273765	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150273766	.	G	.	.	LowGQX	END=150273805	GT	./.
chr1	150276277	.	A	.	.	LowGQX	END=150276325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150276326	.	T	.	.	LowGQX	END=150276376	GT	./.
chr1	150276520	.	C	.	.	LowGQX	END=150276625	GT	./.
chr1	150277042	.	G	.	.	LowGQX	END=150277182	GT	./.
chr1	150277334	.	T	.	.	LowGQX	END=150277493	GT	./.
chr1	150280480	.	A	.	.	LowGQX	END=150280490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150280491	.	T	.	.	LowGQX	.	GT	./.
chr1	150280492	.	A	.	.	LowGQX	END=150280502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150280503	.	C	.	.	LowGQX	END=150280664	GT	./.
chr1	150297350	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:75:99:60
chr1	150297351	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:66:60
chr1	150297352	.	G	.	.	PASS	END=150297353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	150297354	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:70:69:60
chr1	150297355	.	G	.	.	PASS	END=150297359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:90:60
chr1	150297360	.	A	.	.	PASS	END=150297368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	150297369	.	T	.	.	PASS	END=150297412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	150297413	.	A	.	.	PASS	END=150297463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	150297464	.	G	.	.	PASS	END=150297518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	150297519	.	A	.	.	PASS	END=150297584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	150297585	.	T	.	.	PASS	END=150297596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	150298158	.	G	.	.	PASS	END=150298181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	150298182	.	C	.	.	PASS	END=150298191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	150298192	.	G	A	828.75	PASS	BaseQRankSum=-1.090;DP=77;Dels=0.00;FS=5.493;HRun=0;HaplotypeScore=6.7867;MQ=60;MQ0=0;MQRankSum=1.714;QD=10.76;ReadPosRankSum=0.926;SB=-375.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,42:77:99:859,0,956:60:99:0.545
chr1	150298193	.	C	.	.	PASS	END=150298257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	150298258	.	A	.	.	PASS	END=150298298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	150298299	.	C	.	.	PASS	END=150298316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	150298317	.	G	.	.	PASS	END=150298357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	150298358	.	T	.	.	PASS	END=150298374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	150298375	.	T	.	.	PASS	END=150298390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:87:60
chr1	150300728	.	T	.	.	PASS	END=150300757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	150300758	.	T	.	.	PASS	END=150300807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	150300808	.	T	.	.	PASS	END=150300875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	150300876	.	T	.	.	PASS	END=150300894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	150300895	.	A	.	.	PASS	END=150300916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	150300917	.	A	.	.	PASS	END=150300929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	150300930	.	G	.	.	PASS	END=150300935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	150300936	.	A	.	.	PASS	END=150300940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	150300941	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:24:60
chr1	150300942	.	T	.	.	PASS	END=150300961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	150300962	.	G	.	.	PASS	END=150300966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	150300967	.	G	.	.	PASS	END=150300980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	150300981	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:59
chr1	150305104	.	G	.	.	PASS	END=150305208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	150305209	.	C	.	.	PASS	END=150305254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	150305255	.	A	.	.	PASS	END=150305273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	150305274	.	T	.	.	PASS	END=150305289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:88:60
chr1	150305399	.	T	.	.	PASS	END=150305457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	150305458	.	T	.	.	PASS	END=150305490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	150305491	.	T	.	.	PASS	END=150305546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	150305547	.	A	.	.	PASS	END=150305609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	150305610	.	T	.	.	PASS	END=150305646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	150305647	.	C	.	.	PASS	END=150305669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	150305670	.	C	.	.	PASS	END=150305689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	150305690	.	A	.	.	PASS	END=150305721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	150307355	.	C	.	.	LowGQX	END=150307360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	150307361	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	150307362	.	T	.	.	LowGQX	END=150307370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	150307371	.	A	.	.	LowGQX	END=150307384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	150307385	.	T	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	150307386	.	C	.	.	LowGQX	END=150307387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	150307388	.	T	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	150307389	.	T	.	.	LowGQX	END=150307393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	150307394	.	G	.	.	LowGQX	END=150307423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	150307424	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr1	150307425	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr1	150307426	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	150307427	.	A	.	.	LowGQX	END=150307431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	150307432	.	A	.	.	LowGQX	END=150307433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	150307434	.	C	.	.	LowGQX	END=150307437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	150307438	.	C	.	.	LowGQX	END=150307445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	150307446	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	150307447	.	T	.	.	LowGQX	END=150307451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	150307452	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	150307453	.	A	.	.	LowGQX	END=150307459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	150307460	.	A	.	.	PASS	END=150307467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	150307468	.	C	.	.	PASS	END=150307481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	150307482	.	G	.	.	PASS	END=150307494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	150307495	.	A	.	.	PASS	END=150307507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	150307508	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:67:60
chr1	150307509	.	A	.	.	PASS	END=150307538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	150307539	.	G	.	.	PASS	END=150307584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	150307585	.	A	.	.	PASS	END=150307627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	150307628	.	T	.	.	PASS	END=150307646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:81:60
chr1	150307647	.	A	.	.	PASS	END=150307660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	150307661	.	A	.	.	PASS	END=150307670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	150307671	.	A	.	.	PASS	END=150307693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	150307694	.	T	.	.	PASS	END=150307703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	150307704	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:36:60
chr1	150307705	.	G	.	.	PASS	END=150307718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr1	150307719	.	G	.	.	PASS	END=150307722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	150307723	.	T	.	.	PASS	END=150307727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	150307728	.	T	.	.	PASS	END=150307733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	150307734	.	A	.	.	LowGQX	END=150307741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	150307742	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	150307743	.	G	.	.	LowGQX	END=150307750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	150307751	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	150307752	.	T	.	.	LowGQX	END=150307758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	150307759	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:60
chr1	150307760	.	T	.	.	LowGQX	END=150307763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	150310585	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	150310586	.	T	.	.	LowGQX	END=150310587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	150310588	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	150310589	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	150310590	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	150310591	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	150310592	.	A	.	.	LowGQX	END=150310594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	150310595	.	A	.	.	LowGQX	END=150310597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	150310598	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	150310599	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	150310600	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	150310601	.	A	.	.	LowGQX	END=150310606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	150310607	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	150310608	.	T	.	.	LowGQX	END=150310610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	150310611	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	150310612	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	150310613	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	150310614	.	T	.	.	LowGQX	END=150310615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	150310616	.	T	.	.	PASS	END=150310622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	150310623	.	A	.	.	LowGQX	END=150310625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	150310626	.	T	.	.	PASS	END=150310630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	150310631	.	T	.	.	PASS	END=150310637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	150310638	.	T	.	.	PASS	END=150310642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	150310643	.	T	.	.	PASS	END=150310651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	150310652	.	T	.	.	PASS	END=150310653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	150310654	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:9:60
chr1	150310655	.	A	.	.	PASS	END=150310688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	150310689	.	C	.	.	PASS	END=150310694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	150310695	.	T	.	.	PASS	END=150310719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:84:60
chr1	150310720	.	G	.	.	PASS	END=150310760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	150310761	.	T	.	.	PASS	END=150310801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	150310802	.	T	.	.	PASS	END=150310853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	150312823	.	A	.	.	PASS	END=150312837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	150312838	.	C	.	.	PASS	END=150312885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	150312886	.	T	.	.	PASS	END=150312964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	150312965	.	A	.	.	PASS	END=150312988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	150312989	.	A	.	.	PASS	END=150313004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	150315734	.	T	.	.	PASS	END=150315739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	150315740	.	T	.	.	PASS	END=150315747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	150315748	.	C	.	.	PASS	END=150315750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	150315751	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:81:60
chr1	150315752	.	C	.	.	PASS	END=150315754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	150315755	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:57:60
chr1	150315756	.	T	.	.	PASS	END=150315759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	150315760	.	G	.	.	PASS	END=150315768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	150315769	.	T	.	.	PASS	END=150315805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	150315806	.	C	.	.	PASS	END=150315909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	150315910	.	C	.	.	PASS	END=150315927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	150315928	.	G	.	.	PASS	END=150315951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	150315952	.	T	.	.	PASS	END=150315972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	150315973	.	T	.	.	PASS	END=150315979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	150316587	.	C	.	.	PASS	END=150316614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	150316615	.	T	.	.	PASS	END=150316706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	150316707	.	A	.	.	PASS	END=150316758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	150316759	.	G	.	.	PASS	END=150316776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	150316777	.	C	.	.	PASS	END=150316788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	150316859	.	T	.	.	PASS	END=150316870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	150316871	.	T	.	.	PASS	END=150316887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	150316888	.	G	.	.	PASS	END=150316949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	150316950	.	G	.	.	PASS	END=150317012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	150317013	.	T	.	.	PASS	END=150317024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	150317025	.	T	.	.	PASS	END=150317037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:78:60
chr1	150317038	.	T	.	.	PASS	END=150317050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	150317051	.	C	.	.	PASS	END=150317053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:66:60
chr1	150317054	.	T	.	.	PASS	END=150317074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	150318443	.	G	.	.	PASS	END=150318567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	150318568	.	T	.	.	PASS	END=150318586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	150318587	.	T	.	.	PASS	END=150318609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	150318610	.	G	.	.	PASS	END=150318626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	150318627	.	C	.	.	PASS	END=150318636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	150318637	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:69:60
chr1	150318638	.	C	.	.	PASS	END=150318651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	150318652	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:72:60
chr1	150318653	.	C	.	.	PASS	END=150318663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	150318833	.	T	.	.	PASS	END=150318860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:82:60
chr1	150318861	.	A	.	.	PASS	END=150318912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	150318913	.	C	.	.	PASS	END=150318967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	150318968	.	G	.	.	PASS	END=150318991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	150318992	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:67:58:60
chr1	150318993	.	G	.	.	PASS	END=150319011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:93:60
chr1	150319012	.	T	.	.	PASS	END=150319018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:81:60
chr1	150321582	.	G	.	.	PASS	END=150321632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	150321633	.	A	.	.	PASS	END=150321677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	150321678	.	G	.	.	PASS	END=150321700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	150321701	.	G	.	.	PASS	END=150321716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	150321717	.	T	.	.	PASS	END=150321737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	150321738	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:69:60
chr1	150321739	.	T	.	.	PASS	END=150321745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	150325258	.	T	.	.	PASS	END=150325265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	150325266	.	A	.	.	PASS	END=150325318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	150325319	.	A	.	.	PASS	END=150325415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	150325416	.	C	.	.	PASS	END=150325433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	150325434	.	T	.	.	PASS	END=150325444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	150325445	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:75:60
chr1	150325446	.	C	.	.	PASS	END=150325468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	150325469	.	C	.	.	PASS	END=150325473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:57:60
chr1	150325474	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:39:60
chr1	150325475	.	C	.	.	PASS	END=150325491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	150325492	.	T	.	.	PASS	END=150325504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	150325505	.	C	.	.	PASS	END=150325506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	150337190	.	G	.	.	LowGQX	END=150337216	GT	./.
chr1	150337217	.	C	.	.	LowGQX	END=150337241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150337242	.	T	.	.	LowGQX	.	GT	./.
chr1	150337243	.	C	.	.	LowGQX	END=150337264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150337265	.	C	.	.	LowGQX	.	GT	./.
chr1	150337266	.	T	.	.	LowGQX	END=150337288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150337289	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	150337290	.	G	.	.	LowGQX	END=150337304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150337305	.	G	.	.	LowGQX	.	GT	./.
chr1	150337306	.	A	.	.	LowGQX	END=150337365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150337366	.	T	.	.	LowGQX	END=150337395	GT	./.
chr1	150390071	.	G	.	.	LowGQX	END=150390201	GT	./.
chr1	150413338	.	T	.	.	LowGQX	END=150413408	GT	./.
chr1	150413409	.	G	.	.	LowGQX	END=150413459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150413460	.	T	.	.	LowGQX	.	GT	./.
chr1	150413461	.	A	.	.	LowGQX	END=150413522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150414346	.	A	.	.	LowGQX	END=150414445	GT	./.
chr1	150415683	.	T	.	.	LowGQX	END=150415782	GT	./.
chr1	150416726	.	G	.	.	LowGQX	END=150416853	GT	./.
chr1	150418701	.	G	.	.	LowGQX	END=150418877	GT	./.
chr1	150429763	.	G	.	.	LowGQX	END=150429777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150429778	.	T	.	.	LowGQX	.	GT	./.
chr1	150429779	.	G	.	.	LowGQX	END=150429784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150429785	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	150429786	.	G	.	.	LowGQX	END=150429807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150429808	.	G	.	.	LowGQX	END=150429809	GT	./.
chr1	150429810	.	T	.	.	LowGQX	END=150429815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150429816	.	A	.	.	LowGQX	.	GT	./.
chr1	150429817	.	A	.	.	LowGQX	END=150429819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150429820	.	G	.	.	LowGQX	.	GT	./.
chr1	150429821	.	A	.	.	LowGQX	END=150429835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150429836	.	G	.	.	LowGQX	.	GT	./.
chr1	150429837	.	A	.	.	LowGQX	END=150429839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150429840	.	C	.	.	LowGQX	.	GT	./.
chr1	150429841	.	T	.	.	LowGQX	END=150429846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150429847	.	A	.	.	LowGQX	.	GT	./.
chr1	150429848	.	T	.	.	LowGQX	END=150429850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150429851	.	C	.	.	LowGQX	.	GT	./.
chr1	150429852	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150429853	.	A	.	.	LowGQX	.	GT	./.
chr1	150429854	.	G	.	.	LowGQX	END=150429860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150429861	.	C	.	.	LowGQX	END=150429863	GT	./.
chr1	150429864	.	C	.	.	LowGQX	END=150429870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150429871	.	G	.	.	LowGQX	.	GT	./.
chr1	150429872	.	G	.	.	LowGQX	END=150429874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150429875	.	G	.	.	LowGQX	END=150430046	GT	./.
chr1	150432535	.	G	.	.	LowGQX	END=150432793	GT	./.
chr1	150437002	.	G	.	.	LowGQX	END=150437203	GT	./.
chr1	150443036	.	G	.	.	LowGQX	END=150443078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150443079	.	C	.	.	LowGQX	END=150444688	GT	./.
chr1	150444689	.	G	.	.	LowGQX	END=150444806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150444807	.	G	.	.	LowGQX	END=150444838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	150444839	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	150444840	.	A	.	.	LowGQX	END=150444872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	150444873	.	C	.	.	LowGQX	END=150444907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150444908	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	150444909	.	T	.	.	LowGQX	END=150444915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150444916	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	150444917	.	G	.	.	LowGQX	END=150444961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150444962	.	A	.	.	LowGQX	.	GT	./.
chr1	150444963	.	G	.	.	LowGQX	END=150444995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150444996	.	A	.	.	LowGQX	.	GT	./.
chr1	150444997	.	G	.	.	LowGQX	END=150445081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445082	.	C	.	.	LowGQX	END=150445097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	150445098	.	G	.	.	LowGQX	END=150445100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	150445101	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	150445102	.	C	.	.	LowGQX	END=150445188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	150445189	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	150445190	.	C	.	.	LowGQX	END=150445194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	150445195	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	150445196	.	C	.	.	LowGQX	END=150445197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	150445198	.	T	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	150445199	.	C	.	.	LowGQX	END=150445203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	150445204	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	150445205	.	G	.	.	LowGQX	END=150445217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	150445218	.	T	.	.	LowGQX	END=150445233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445234	.	A	.	.	LowGQX	.	GT	./.
chr1	150445235	.	C	.	.	LowGQX	END=150445236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445237	.	T	.	.	LowGQX	.	GT	./.
chr1	150445238	.	C	.	.	LowGQX	END=150445239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445240	.	T	.	.	LowGQX	.	GT	./.
chr1	150445241	.	C	.	.	LowGQX	END=150445242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445243	.	T	.	.	LowGQX	.	GT	./.
chr1	150445244	.	C	.	.	LowGQX	END=150445248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445249	.	T	.	.	LowGQX	END=150445250	GT	./.
chr1	150445251	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445252	.	T	.	.	LowGQX	END=150445253	GT	./.
chr1	150445254	.	G	.	.	LowGQX	END=150445256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445257	.	A	.	.	LowGQX	.	GT	./.
chr1	150445258	.	A	.	.	LowGQX	END=150445259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445260	.	A	.	.	LowGQX	END=150445263	GT	./.
chr1	150445264	.	C	.	.	LowGQX	END=150445265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445266	.	G	.	.	LowGQX	.	GT	./.
chr1	150445267	.	C	.	.	LowGQX	END=150445269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445270	.	T	.	.	LowGQX	.	GT	./.
chr1	150445271	.	G	.	.	LowGQX	END=150445276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445277	.	A	.	.	LowGQX	END=150445279	GT	./.
chr1	150445280	.	G	.	.	LowGQX	END=150445281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445282	.	T	.	.	LowGQX	END=150445328	GT	./.
chr1	150445329	.	C	.	.	LowGQX	END=150445594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445595	.	A	.	.	LowGQX	.	GT	./.
chr1	150445596	.	G	.	.	LowGQX	END=150445629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445630	.	A	.	.	LowGQX	.	GT	./.
chr1	150445631	.	C	.	.	LowGQX	END=150445670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445671	.	G	.	.	LowGQX	.	GT	./.
chr1	150445672	.	T	.	.	LowGQX	END=150445676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445677	.	G	.	.	LowGQX	.	GT	./.
chr1	150445678	.	G	.	.	LowGQX	END=150445681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445682	.	G	.	.	LowGQX	END=150445683	GT	./.
chr1	150445684	.	C	.	.	LowGQX	END=150445691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445692	.	C	.	.	LowGQX	.	GT	./.
chr1	150445693	.	T	.	.	LowGQX	END=150445703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150445704	.	T	.	.	LowGQX	.	GT	./.
chr1	150445705	.	T	.	.	LowGQX	END=150445810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150459910	.	C	.	.	LowGQX	END=150460009	GT	./.
chr1	150460332	.	A	.	.	LowGQX	END=150460532	GT	./.
chr1	150461438	.	A	.	.	LowGQX	END=150461713	GT	./.
chr1	150463075	.	A	.	.	LowGQX	END=150463244	GT	./.
chr1	150463868	.	A	.	.	LowGQX	END=150463912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150463913	.	C	.	.	LowGQX	.	GT	./.
chr1	150463914	.	A	.	.	LowGQX	END=150463917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150463918	.	A	.	.	LowGQX	.	GT	./.
chr1	150463919	.	C	.	.	LowGQX	END=150463928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150463929	.	C	.	.	LowGQX	.	GT	./.
chr1	150463930	.	T	.	.	LowGQX	END=150463935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150463936	.	A	.	.	LowGQX	.	GT	./.
chr1	150463937	.	C	.	.	LowGQX	END=150463950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150463951	.	A	.	.	LowGQX	.	GT	./.
chr1	150463952	.	G	.	.	LowGQX	END=150463959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150463960	.	A	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	150463961	.	C	.	.	LowGQX	END=150463962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150463963	.	G	.	.	LowGQX	.	GT	./.
chr1	150463964	.	G	.	.	LowGQX	END=150463966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150463967	.	C	.	.	LowGQX	.	GT	./.
chr1	150463968	.	A	.	.	LowGQX	END=150463970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150463971	.	T	.	.	LowGQX	.	GT	./.
chr1	150463972	.	T	.	.	LowGQX	END=150463976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150463977	.	A	.	.	LowGQX	.	GT	./.
chr1	150463978	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150463979	.	T	.	.	LowGQX	.	GT	./.
chr1	150463980	.	T	.	.	LowGQX	END=150463982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150463983	.	T	.	.	LowGQX	.	GT	./.
chr1	150463984	.	C	.	.	LowGQX	END=150463989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150464057	.	C	.	.	LowGQX	END=150464156	GT	./.
chr1	150464877	.	T	.	.	LowGQX	END=150464976	GT	./.
chr1	150468956	.	A	.	.	LowGQX	END=150469104	GT	./.
chr1	150469105	.	G	.	.	LowGQX	END=150469106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150469284	.	A	.	.	LowGQX	END=150469386	GT	./.
chr1	150470004	.	A	.	.	LowGQX	END=150470225	GT	./.
chr1	150470976	.	A	.	.	LowGQX	END=150471195	GT	./.
chr1	150471371	.	A	.	.	LowGQX	END=150471512	GT	./.
chr1	150471681	.	T	.	.	LowGQX	END=150471780	GT	./.
chr1	150476809	.	A	.	.	LowGQX	END=150476913	GT	./.
chr1	150477106	.	A	.	.	LowGQX	END=150477117	GT	./.
chr1	150477118	.	G	.	.	LowGQX	END=150477211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150477369	.	C	.	.	LowGQX	END=150477373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	150477374	.	C	.	.	LowGQX	END=150477399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	150477400	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	150477401	.	T	.	.	LowGQX	END=150477403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	150477404	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	150477405	.	A	.	.	LowGQX	END=150477427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150477428	.	A	.	.	LowGQX	.	GT	./.
chr1	150477429	.	G	.	.	LowGQX	END=150477468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150477995	.	A	.	.	LowGQX	END=150478008	GT	./.
chr1	150478009	.	G	.	.	LowGQX	END=150478125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150478126	.	G	.	.	LowGQX	END=150478183	GT	./.
chr1	150479390	.	A	.	.	LowGQX	END=150479542	GT	./.
chr1	150480635	.	A	.	.	PASS	END=150480662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	150480663	.	G	.	.	PASS	END=150480763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	150480764	.	G	.	.	PASS	END=150480768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	150480769	.	T	.	192.51	PASS	DP=95;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:70:95:99:60:99
chr1	150480770	.	C	.	.	PASS	END=150480786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	150480787	.	T	.	144.23	PASS	DP=85;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:57:85:99:60:99
chr1	150480788	.	C	.	.	PASS	END=150480806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	150481956	.	G	.	.	PASS	END=150481999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	150482000	.	C	.	.	PASS	END=150482055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	150482056	.	A	.	.	PASS	END=150482149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	150482150	.	T	.	.	PASS	END=150482156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	150482157	.	T	.	.	PASS	END=150482191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	150482192	.	C	.	.	PASS	END=150482254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	150482255	.	A	G	1097.52	PASS	BaseQRankSum=0.068;DP=105;Dels=0.00;FS=0.784;HRun=0;HaplotypeScore=18.9911;MQ=60;MQ0=0;MQRankSum=-0.190;QD=10.45;ReadPosRankSum=2.403;SB=-603.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:57,48:105:99:1128,0,1354:60:99:0.457
chr1	150482256	.	T	.	.	PASS	END=150482289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	150482310	.	G	.	.	PASS	END=150482391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	150482392	.	C	.	.	PASS	END=150482492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	150482493	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:110:66:60
chr1	150482494	.	C	.	.	PASS	END=150482539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	150482540	.	G	.	.	PASS	END=150482618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	150482619	.	G	.	.	PASS	END=150482685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	150482686	.	A	.	.	PASS	END=150482709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	150483301	.	T	.	.	PASS	END=150483310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	150483311	.	C	.	.	PASS	END=150483312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	150483313	.	T	.	.	PASS	END=150483333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	150483334	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:18:60
chr1	150483335	.	T	.	.	PASS	END=150483354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	150483355	.	C	T	408.88	SB	BaseQRankSum=3.073;DP=25;Dels=0.00;FS=3.188;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=1.713;QD=16.36;ReadPosRankSum=0.843;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:12,13:25:99:439,0,336:60:99:0.520
chr1	150483356	.	G	.	.	PASS	END=150483372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	150483373	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:45:60
chr1	150483374	.	C	.	.	PASS	END=150483381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	150483382	.	A	.	.	PASS	END=150483388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	150483389	.	A	.	.	PASS	END=150483394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr1	150483395	.	G	.	.	PASS	END=150483406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	150483407	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:53:60
chr1	150483408	.	G	.	.	PASS	END=150483410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	150483411	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:61:60
chr1	150483412	.	A	.	.	PASS	END=150483422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:96:60
chr1	150483423	.	C	.	.	PASS	END=150483482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	150483483	.	T	.	.	PASS	END=150483517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	150483518	.	C	.	.	PASS	END=150483565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	150483566	.	C	.	.	PASS	END=150483631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	150483632	.	C	.	.	PASS	END=150483660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	150483661	.	G	.	.	PASS	END=150483678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	150483679	.	G	.	.	PASS	END=150483702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	150483703	.	T	.	.	PASS	END=150483705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	150483706	.	C	.	.	PASS	END=150483715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	150483716	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:47:60
chr1	150483717	.	A	.	.	PASS	END=150483719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr1	150483720	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:53:60
chr1	150483721	.	A	.	.	PASS	END=150483731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	150483732	.	T	.	.	PASS	END=150483733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	150483882	.	G	.	.	PASS	END=150483912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	150483913	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:63:60
chr1	150483914	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:27:60
chr1	150483915	.	C	.	.	PASS	END=150483948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	150483949	.	G	.	.	PASS	END=150483953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	150483954	.	T	.	.	PASS	END=150483967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	150483968	.	G	.	.	PASS	END=150483975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	150483976	.	T	.	.	PASS	END=150483987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	150483988	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:99:60
chr1	150483989	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:60:60
chr1	150483990	.	C	.	.	PASS	END=150484004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	150484005	.	C	.	.	PASS	END=150484038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	150484039	.	A	.	.	PASS	END=150484088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	150484089	.	C	.	.	PASS	END=150484145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	150484146	.	A	.	.	PASS	END=150484193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:91:60
chr1	150484194	.	A	.	.	PASS	END=150484225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:96:60
chr1	150484226	.	G	.	.	PASS	END=150484256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr1	150484257	.	T	.	.	PASS	END=150484258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:75:60
chr1	150484259	.	C	.	.	PASS	END=150484269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	150484270	.	G	.	.	PASS	END=150484271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:51:60
chr1	150484272	.	C	.	.	PASS	END=150484273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	150484274	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:45:60
chr1	150484275	.	C	.	.	PASS	END=150484282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	150484283	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:51:60
chr1	150484284	.	A	.	.	PASS	END=150484288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	150484289	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:39:60
chr1	150484290	.	A	.	.	PASS	END=150484299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:75:60
chr1	150484300	.	G	.	.	PASS	END=150484302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	150484303	.	A	.	.	PASS	END=150484306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	150484307	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chr1	150484308	.	G	.	.	PASS	END=150484312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	150484313	.	T	.	.	PASS	END=150484316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	150484317	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:2:60
chr1	150484318	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:36:60
chr1	150484319	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	150484320	.	C	.	.	PASS	END=150484338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	150484339	.	T	.	.	LowGQX	END=150484348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	150484349	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr1	150484350	.	C	.	.	LowGQX	END=150484357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	150484358	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	150484777	.	A	.	.	PASS	END=150484793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	150484794	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:51:60
chr1	150484795	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	150484796	.	C	.	.	PASS	END=150484804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	150484805	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:30:60
chr1	150484806	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:54:60
chr1	150484807	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:60
chr1	150484808	.	T	.	.	PASS	END=150484809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	150484810	.	C	.	.	PASS	END=150484815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	150484816	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:12:60
chr1	150484817	.	C	.	.	PASS	END=150484826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	150484827	.	G	.	.	PASS	END=150484834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	150484835	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:57:60
chr1	150484836	.	T	.	.	PASS	END=150484838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	150484839	.	C	.	.	PASS	END=150484855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	150484856	.	A	.	.	PASS	END=150484857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	150484858	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:67:60
chr1	150484859	.	G	.	.	PASS	END=150484869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	150484870	.	G	.	.	PASS	END=150484903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	150484904	.	C	.	.	PASS	END=150484919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	150484920	.	G	.	.	PASS	END=150484986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	150484987	.	G	A	1351.96	PASS	BaseQRankSum=3.258;DP=120;Dels=0.00;FS=4.847;HRun=0;HaplotypeScore=19.1321;MQ=60;MQ0=0;MQRankSum=-0.347;QD=11.27;ReadPosRankSum=0.620;SB=-820.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:63,57:120:99:1382,0,1520:60:99:0.475
chr1	150484988	.	G	.	.	PASS	END=150485013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	150485014	.	C	.	.	PASS	END=150485055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	150485056	.	G	.	.	PASS	END=150485064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	150485065	.	T	.	.	PASS	END=150485075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	150485076	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:60
chr1	150485077	.	T	.	.	PASS	END=150485099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	150485150	.	G	.	.	PASS	END=150485176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	150485177	.	C	.	.	PASS	END=150485283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	150485284	.	A	.	.	PASS	END=150485309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr1	150485310	.	T	.	.	PASS	END=150485311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	150485312	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:60:60
chr1	150485313	.	A	.	.	PASS	END=150485327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	150485328	.	A	.	.	PASS	END=150485332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	150485333	.	A	.	.	PASS	END=150485339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr1	150485662	.	C	.	.	PASS	END=150485666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:96:60
chr1	150485667	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:69:60
chr1	150485668	.	C	.	.	PASS	END=150485669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	150485670	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr1	150485671	.	C	.	.	PASS	END=150485677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	150485678	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:63:60
chr1	150485679	.	C	.	.	PASS	END=150485695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	150485696	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:57:60
chr1	150485697	.	T	.	.	PASS	END=150485700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	150485701	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:74:60
chr1	150485702	.	T	.	.	PASS	END=150485735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	150485736	.	G	.	.	PASS	END=150485764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	150485765	.	A	.	.	PASS	END=150485788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	150485789	.	G	.	.	PASS	END=150485836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	150485837	.	A	.	.	PASS	END=150485902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	150485903	.	G	.	.	PASS	END=150485929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	150485930	.	C	.	.	PASS	END=150485952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	150485953	.	G	.	.	PASS	END=150485963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	150485964	.	G	.	.	PASS	END=150485982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	150485983	.	C	.	.	PASS	END=150485987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:87:60
chr1	150485988	.	T	.	.	PASS	END=150485994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	150522693	.	T	.	.	LowGQX	END=150522792	GT	./.
chr1	150523090	.	G	.	.	LowGQX	END=150523144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150523145	.	T	.	.	LowGQX	END=150523536	GT	./.
chr1	150524705	.	C	.	.	PASS	END=150524789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	150524790	.	A	.	.	PASS	END=150524799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	150524800	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:53:60
chr1	150524801	.	C	.	.	PASS	END=150524826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	150524827	.	G	.	.	PASS	END=150524835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	150524968	.	C	.	.	PASS	END=150525082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	150525083	.	T	.	.	PASS	END=150525106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	150525107	.	C	.	.	PASS	END=150525125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	150525126	.	C	.	.	PASS	END=150525127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	150525323	.	G	.	.	PASS	END=150525340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	150525341	.	T	.	.	PASS	END=150525371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	150525372	.	A	.	.	PASS	END=150525400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	150525401	.	C	.	.	PASS	END=150525505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	150525506	.	T	.	.	PASS	END=150525545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	150525546	.	T	.	267.73	PASS	DP=149;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:119:149:99:60:99
chr1	150525547	.	C	.	.	PASS	END=150525549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	150525550	.	T	.	263.28	PASS	DP=143;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:112:143:99:60:99
chr1	150525551	.	C	.	.	PASS	END=150525554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	150525555	.	G	.	273.70	PASS	DP=142;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:110:142:99:60:99
chr1	150525556	.	G	.	.	PASS	END=150525633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	150525634	.	G	.	.	PASS	END=150525696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	150525697	.	A	.	.	PASS	END=150525738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	150525739	.	C	.	.	PASS	END=150525764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	150525765	.	A	.	.	PASS	END=150525780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	150525851	.	A	.	.	PASS	END=150525855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	150525856	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:30:60
chr1	150525857	.	A	.	.	PASS	END=150525884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	150525885	.	C	.	.	PASS	END=150525926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:93:60
chr1	150525927	.	C	.	.	PASS	END=150525986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:82:60
chr1	150525987	.	C	.	.	PASS	END=150526026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	150526027	.	C	.	.	PASS	END=150526043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	150526044	.	G	C	3623.28	PASS	BaseQRankSum=0.661;DP=133;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=12.4052;MQ=60;MQ0=0;MQRankSum=0.233;QD=27.24;ReadPosRankSum=-0.643;SB=-2051.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,130:133:99:3623,244,0:60:99:0.985
chr1	150526045	.	C	.	.	PASS	END=150526109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	150526110	.	C	.	.	PASS	END=150526136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	150526137	.	C	.	.	PASS	END=150526138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	150526139	.	A	.	.	PASS	END=150526181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	150526182	.	G	.	.	PASS	END=150526209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:77:60
chr1	150526210	.	C	.	.	PASS	END=150526237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	150526238	.	C	.	.	PASS	END=150526252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	150526253	.	C	.	.	PASS	END=150526267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	150526268	.	C	.	.	PASS	END=150526274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	150526275	.	G	.	.	PASS	END=150526310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	150526311	.	C	.	.	PASS	END=150526405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	150526406	.	C	T	5622.04	PASS	BaseQRankSum=-1.626;DP=227;Dels=0.00;FS=5.638;HRun=0;HaplotypeScore=19.2544;MQ=60;MQ0=0;MQRankSum=-0.502;QD=24.77;ReadPosRankSum=-1.680;SB=-2134.16	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:3,217:227:99:5622,361,0:60:99:0.986
chr1	150526407	.	C	.	.	PASS	END=150526433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	150526434	.	C	.	.	PASS	END=150526574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	150526575	.	C	.	.	PASS	END=150526604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	150526605	.	C	.	.	PASS	END=150526641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	150526642	.	T	.	.	PASS	END=150526649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	150526790	.	C	.	.	PASS	END=150526802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:59
chr1	150526803	.	G	.	.	PASS	END=150526804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	150526805	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:48:60
chr1	150526806	.	C	.	.	PASS	END=150526807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	150526808	.	C	.	.	PASS	END=150526809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	150526810	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:36:24:60
chr1	150526811	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:84:60
chr1	150526812	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:45:60
chr1	150526813	.	T	.	.	PASS	END=150526816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	150526817	.	A	.	.	PASS	END=150526818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	150526819	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:69:60
chr1	150526820	.	C	.	.	PASS	END=150526821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	150526822	.	T	.	.	PASS	END=150526823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	150526824	.	T	.	.	PASS	END=150526838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	150526839	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr1	150526840	.	G	.	.	PASS	END=150526855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:81:60
chr1	150526856	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:51:60
chr1	150526857	.	A	.	.	PASS	END=150526862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr1	150526863	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:42:60
chr1	150526864	.	C	.	.	PASS	END=150526880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	150526881	.	G	.	.	PASS	END=150526915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	150526916	.	C	.	.	PASS	END=150526974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	150526975	.	T	.	.	PASS	END=150526994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	150527026	.	C	.	.	PASS	END=150527035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	150527036	.	T	.	.	PASS	END=150527045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	150527046	.	T	.	.	PASS	END=150527056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	150527057	.	T	.	.	PASS	END=150527066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	150527067	.	C	.	.	PASS	END=150527073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	150527074	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:9:60
chr1	150527075	.	T	.	.	PASS	END=150527098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	150527099	.	A	.	.	PASS	END=150527105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	150527106	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	150527107	.	G	.	.	PASS	END=150527108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	150527109	.	T	.	.	LowGQX	END=150527111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	150527112	.	T	.	.	LowGQX	END=150527114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	150527115	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	150527116	.	T	.	.	LowGQX	END=150527118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	150527119	.	T	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	150527120	.	C	.	.	LowGQX	END=150527124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	150527125	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:60
chr1	150527854	.	C	.	.	PASS	END=150527856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	150527857	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:74:60
chr1	150527858	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:50:60
chr1	150527859	.	C	.	.	PASS	END=150527883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	150527884	.	C	.	.	PASS	END=150527887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	150527888	.	T	.	.	PASS	END=150527914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	150527915	.	C	.	.	PASS	END=150527953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	150527954	.	C	.	.	PASS	END=150528036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	150528037	.	G	.	.	PASS	END=150528063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	150528064	.	T	.	.	PASS	END=150528086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	150528087	.	A	.	.	PASS	END=150528090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	150528090	.	G	GACAC	3410.00	PASS	DP=64;FS=0.000;HRun=0;HaplotypeScore=298.0145;MQ=60;MQ0=0;QD=53.28;SB=-337.57	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:16,48:64:99:3410,159,0:60:99:0.750
chr1	150528091	.	A	.	.	PASS	END=150528092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	150528587	.	T	.	.	PASS	END=150528612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	150528613	.	C	.	.	PASS	END=150528623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	150528624	.	C	.	.	PASS	END=150528652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	150528653	.	G	.	.	PASS	END=150528681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	150528682	.	T	.	.	PASS	END=150528749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	150528750	.	G	.	.	PASS	END=150528803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	150528804	.	T	.	.	PASS	END=150528835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	150528836	.	T	.	.	PASS	END=150528863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	150528864	.	C	.	.	PASS	END=150528893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	150529046	.	G	.	.	PASS	END=150529077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	150529078	.	T	.	.	PASS	END=150529121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	150529122	.	C	.	.	PASS	END=150529155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	150529156	.	G	.	.	PASS	END=150529272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	150529273	.	A	.	.	PASS	END=150529306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	150529307	.	G	.	.	PASS	END=150529320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	150529364	.	G	.	.	PASS	END=150529487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	150529488	.	A	.	.	PASS	END=150529514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	150529515	.	A	.	.	PASS	END=150529540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	150529541	.	C	.	.	PASS	END=150529641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	150529642	.	G	.	.	PASS	END=150529731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	150529732	.	T	.	.	PASS	END=150529862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	150529919	.	G	.	.	PASS	END=150529961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	150529962	.	C	.	.	PASS	END=150530063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	150530064	.	C	.	.	PASS	END=150530100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	150530101	.	T	.	.	PASS	END=150530123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	150530124	.	A	.	.	PASS	END=150530134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	150530135	.	A	.	.	PASS	END=150530150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	150530370	.	A	.	.	PASS	END=150530394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	150530395	.	C	.	.	PASS	END=150530445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	150530446	.	T	.	.	PASS	END=150530583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	150530584	.	C	.	.	PASS	END=150530676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	150530898	.	G	.	.	PASS	END=150530943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	150530944	.	C	.	.	PASS	END=150530959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	150530960	.	G	.	.	PASS	END=150530996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	150530997	.	G	.	.	PASS	END=150531007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	150531008	.	T	C	4148.37	PASS	BaseQRankSum=0.577;DP=148;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=24.8178;MQ=60;MQ0=0;MQRankSum=0.226;QD=28.03;ReadPosRankSum=1.647;SB=-1890.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,145:148:99:4148,274,0:60:99:0.986
chr1	150531009	.	G	.	.	PASS	END=150531039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	150531040	.	C	.	.	PASS	END=150531049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	150531050	.	G	A	4921.53	PASS	BaseQRankSum=0.422;DP=202;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=24.8901;MQ=60;MQ0=0;MQRankSum=-1.043;QD=24.36;ReadPosRankSum=0.267;SB=-2841.21	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,200:202:99:4922,337,0:60:99:0.995
chr1	150531051	.	C	.	.	PASS	END=150531137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	150531138	.	C	.	.	PASS	END=150531157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	150531158	.	C	.	.	PASS	END=150531169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	150531170	.	C	T	3149.95	PASS	DP=107;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=13.4043;MQ=60;MQ0=0;QD=29.44;SB=-1162.73	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,106:107:99:3183,244,0:60:99:1.000
chr1	150531171	.	G	.	.	PASS	END=150531191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	150531192	.	C	.	.	PASS	END=150531209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	150531210	.	C	.	.	PASS	END=150531239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	150531240	.	T	.	.	PASS	END=150531251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	150531387	.	T	.	.	PASS	END=150531390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	150531391	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:21:60
chr1	150531392	.	C	.	.	PASS	END=150531402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	150531403	.	A	.	.	PASS	END=150531406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	150531407	.	C	.	.	PASS	END=150531424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	150531425	.	T	.	.	PASS	END=150531436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	150531437	.	G	.	.	PASS	END=150531448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	150531449	.	G	.	.	PASS	END=150531477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	150531478	.	T	.	.	PASS	END=150531490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	150531491	.	G	.	.	PASS	END=150531507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	150531508	.	G	.	.	PASS	END=150531631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	150531632	.	C	.	.	PASS	END=150531649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	150531650	.	A	.	.	PASS	END=150531692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	150531712	.	G	.	.	PASS	END=150531729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	150531730	.	T	.	.	PASS	END=150531749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:90:60
chr1	150531750	.	C	.	.	PASS	END=150531764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	150531765	.	C	.	.	PASS	END=150531791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	150531792	.	G	.	.	PASS	END=150531834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	150531835	.	A	.	.	PASS	END=150531900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	150531901	.	C	.	.	PASS	END=150531939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	150531940	.	C	.	.	PASS	END=150531950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	150531951	.	C	.	.	PASS	END=150531970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	150531971	.	T	.	.	PASS	END=150531993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	150532186	.	G	.	.	PASS	END=150532193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	150532194	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:70:60:60
chr1	150532195	.	G	.	.	PASS	END=150532237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	150532238	.	G	.	.	PASS	END=150532326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	150532327	.	C	.	.	PASS	END=150532370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	150532371	.	C	.	.	PASS	END=150532432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	150532485	.	C	.	.	PASS	END=150532512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	150532513	.	C	.	.	PASS	END=150532543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	150532544	.	T	.	.	PASS	END=150532673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	150532674	.	A	.	.	PASS	END=150532693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	150532694	.	C	.	.	PASS	END=150532723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	150533556	.	A	.	.	LowGQX	END=150533611	GT	./.
chr1	150533612	.	A	.	.	LowGQX	END=150533791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150533792	.	C	.	.	LowGQX	END=150533863	GT	./.
chr1	150533864	.	G	.	.	LowGQX	END=150533897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150533898	.	G	.	.	LowGQX	.	GT	./.
chr1	150533899	.	G	.	.	LowGQX	END=150533946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150549838	.	A	.	.	PASS	END=150549886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	150549887	.	A	.	.	PASS	END=150549935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	150549936	.	T	.	.	PASS	END=150549955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	150549956	.	C	.	.	PASS	END=150549969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	150550718	.	A	.	.	PASS	END=150550743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	150550744	.	G	.	.	PASS	END=150550916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	150550917	.	A	.	.	PASS	END=150550969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	150551317	.	A	.	.	PASS	END=150551345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	150551346	.	G	.	.	PASS	END=150551395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	150551396	.	G	.	.	PASS	END=150551502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	150551503	.	C	.	.	PASS	END=150551543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	150551544	.	T	.	.	PASS	END=150551567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	150551568	.	C	.	.	PASS	END=150551634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	150551635	.	C	.	.	PASS	END=150551683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	150551684	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:59:60
chr1	150551685	.	G	.	.	PASS	END=150551702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr1	150551703	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:72:60
chr1	150551704	.	G	.	.	PASS	END=150551749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	150551750	.	A	.	.	PASS	END=150551752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	150551753	.	T	.	.	PASS	END=150551769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	150551770	.	C	.	.	PASS	END=150551783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	150551784	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:3:60
chr1	150551785	.	C	.	.	PASS	END=150551791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	150551792	.	T	.	.	PASS	END=150551799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	150551800	.	G	.	.	PASS	END=150551803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	150551804	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	150551805	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:33:60
chr1	150551806	.	G	.	.	PASS	END=150551810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	150551811	.	G	.	.	PASS	END=150551817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	150551818	.	T	.	.	PASS	END=150551820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	150551821	.	G	.	.	PASS	END=150551828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	150551829	.	T	.	.	PASS	END=150551830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:39:60
chr1	150551831	.	C	.	.	PASS	END=150551839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	150551840	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:48:60
chr1	150551841	.	C	.	.	PASS	END=150551849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	150551850	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:39:60
chr1	150551851	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:69:60
chr1	150551852	.	T	.	.	PASS	END=150551853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	150551854	.	C	.	.	PASS	END=150551856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	150551857	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:36:60
chr1	150551858	.	C	.	.	PASS	END=150551862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	150551863	.	T	.	.	PASS	END=150551865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:51:60
chr1	150551866	.	C	.	.	PASS	END=150551871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	150551872	.	C	.	.	PASS	END=150551879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	150551880	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:57:60
chr1	150551881	.	G	.	.	PASS	END=150551895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	150551896	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:66:60
chr1	150551897	.	G	.	.	PASS	END=150551905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	150551906	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:60:60
chr1	150551907	.	G	.	.	PASS	END=150551913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	150551914	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:75:60
chr1	150551915	.	G	.	.	PASS	END=150551939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	150551940	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:60:60
chr1	150551941	.	C	.	.	PASS	END=150551944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr1	150551945	.	A	.	70.67	PASS	DP=47;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:37:47:40.68:60:41
chr1	150551946	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:63:60
chr1	150551947	.	G	.	.	PASS	END=150551948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr1	150551949	.	C	.	.	PASS	END=150551950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:72:60
chr1	150551951	.	G	.	.	PASS	END=150551958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	150551959	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:69:60
chr1	150551960	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:99:60
chr1	150551961	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:75:60
chr1	150551962	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:99:60
chr1	150551963	.	T	.	.	PASS	END=150551964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:69:60
chr1	150551965	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:99:60
chr1	150551966	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:42:60
chr1	150551967	.	G	.	.	PASS	END=150551968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	150551969	.	T	.	.	PASS	END=150551970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:72:60
chr1	150551971	.	G	.	.	PASS	END=150552010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	150573568	.	C	.	.	LowGQX	END=150573755	GT	./.
chr1	150595278	.	G	.	.	PASS	END=150595316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:96:60
chr1	150595317	.	G	.	.	PASS	END=150595343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	150595344	.	G	.	162.40	PASS	DP=80;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:59:80:99:60:99
chr1	150595345	.	A	.	.	PASS	END=150595350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	150595351	.	G	.	141.35	PASS	DP=72;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:49:71:99:60:99
chr1	150595352	.	A	.	.	PASS	END=150595353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	150595354	.	G	.	144.23	PASS	DP=70;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:44:70:99:60:99
chr1	150595355	.	A	.	.	PASS	END=150595377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	150598108	.	C	.	.	PASS	END=150598113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:59
chr1	150598114	.	T	.	.	PASS	END=150598161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:58
chr1	150598162	.	A	.	.	PASS	END=150598203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:58
chr1	150598204	.	G	.	.	PASS	END=150598286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:59
chr1	150598929	.	A	.	.	PASS	END=150598969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	150598970	.	G	.	.	PASS	END=150599017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	150599018	.	A	.	.	PASS	END=150599028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	150599806	.	T	.	.	PASS	END=150599989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	150599990	.	G	.	.	PASS	END=150600070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:59
chr1	150601510	.	C	.	.	PASS	END=150601551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	150601552	.	A	.	.	PASS	END=150601609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	150601869	.	C	.	.	PASS	END=150601965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	150601966	.	A	.	.	PASS	END=150601968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	150620795	.	C	.	.	LowGQX	END=150621226	GT	./.
chr1	150634288	.	A	.	.	LowGQX	END=150634406	GT	./.
chr1	150636106	.	A	.	.	LowGQX	END=150636241	GT	./.
chr1	150666507	.	T	.	.	LowGQX	END=150666543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150666544	.	A	.	.	LowGQX	END=150666597	GT	./.
chr1	150666598	.	G	.	.	LowGQX	END=150666666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150667130	.	A	.	.	LowGQX	END=150667316	GT	./.
chr1	150671121	.	A	.	.	LowGQX	END=150671220	GT	./.
chr1	150672574	.	A	.	.	LowGQX	END=150672673	GT	./.
chr1	150675724	.	A	.	.	LowGQX	END=150675877	GT	./.
chr1	150676583	.	C	.	.	LowGQX	END=150676836	GT	./.
chr1	150679027	.	A	.	.	LowGQX	END=150679038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679039	.	T	.	.	LowGQX	END=150679053	GT	./.
chr1	150679054	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679055	.	C	.	.	LowGQX	.	GT	./.
chr1	150679056	.	T	.	.	LowGQX	END=150679068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679069	.	C	.	.	LowGQX	.	GT	./.
chr1	150679070	.	T	.	.	LowGQX	END=150679071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679072	.	A	.	.	LowGQX	.	GT	./.
chr1	150679073	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679074	.	G	.	.	LowGQX	END=150679076	GT	./.
chr1	150679077	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679078	.	T	.	.	LowGQX	.	GT	./.
chr1	150679079	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679080	.	T	.	.	LowGQX	END=150679081	GT	./.
chr1	150679082	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679083	.	A	.	.	LowGQX	END=150679085	GT	./.
chr1	150679086	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679087	.	G	.	.	LowGQX	END=150679089	GT	./.
chr1	150679090	.	G	.	.	LowGQX	END=150679091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679092	.	T	.	.	LowGQX	END=150679097	GT	./.
chr1	150679098	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679099	.	T	.	.	LowGQX	.	GT	./.
chr1	150679100	.	G	.	.	LowGQX	END=150679102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679103	.	T	.	.	LowGQX	END=150679105	GT	./.
chr1	150679106	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679107	.	T	.	.	LowGQX	.	GT	./.
chr1	150679108	.	G	.	.	LowGQX	END=150679110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679111	.	A	.	.	LowGQX	END=150679112	GT	./.
chr1	150679113	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679114	.	A	.	.	LowGQX	.	GT	./.
chr1	150679115	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679116	.	A	.	.	LowGQX	.	GT	./.
chr1	150679117	.	G	.	.	LowGQX	END=150679118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679119	.	T	.	.	LowGQX	END=150679121	GT	./.
chr1	150679122	.	G	.	.	LowGQX	END=150679124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679125	.	A	.	.	LowGQX	END=150679126	GT	./.
chr1	150679127	.	T	.	.	LowGQX	END=150679131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679132	.	T	.	.	LowGQX	END=150679135	GT	./.
chr1	150679136	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679137	.	T	.	.	LowGQX	.	GT	./.
chr1	150679138	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679139	.	G	.	.	LowGQX	END=150679141	GT	./.
chr1	150679142	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679143	.	T	.	.	LowGQX	END=150679144	GT	./.
chr1	150679145	.	T	.	.	LowGQX	END=150679146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679147	.	T	.	.	LowGQX	.	GT	./.
chr1	150679148	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679149	.	A	.	.	LowGQX	END=150679154	GT	./.
chr1	150679155	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679156	.	A	.	.	LowGQX	END=150679157	GT	./.
chr1	150679158	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679159	.	T	.	.	LowGQX	.	GT	./.
chr1	150679160	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679161	.	T	.	.	LowGQX	END=150679162	GT	./.
chr1	150679163	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679164	.	T	.	.	LowGQX	.	GT	./.
chr1	150679165	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679166	.	T	.	.	LowGQX	END=150679169	GT	./.
chr1	150679170	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679171	.	A	.	.	LowGQX	.	GT	./.
chr1	150679172	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679173	.	G	.	.	LowGQX	END=150679174	GT	./.
chr1	150679175	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679176	.	A	.	.	LowGQX	END=150679179	GT	./.
chr1	150679180	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679181	.	G	.	.	LowGQX	END=150679182	GT	./.
chr1	150679183	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679184	.	T	.	.	LowGQX	END=150679185	GT	./.
chr1	150679186	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679187	.	A	.	.	LowGQX	.	GT	./.
chr1	150679188	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679189	.	A	.	.	LowGQX	.	GT	./.
chr1	150679190	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679191	.	T	.	.	LowGQX	END=150679192	GT	./.
chr1	150679193	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679194	.	T	.	.	LowGQX	.	GT	./.
chr1	150679195	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150679196	.	C	.	.	LowGQX	END=150679280	GT	./.
chr1	150679281	.	T	.	.	LowGQX	END=150679287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150680730	.	A	.	.	LowGQX	END=150680885	GT	./.
chr1	150681364	.	C	.	.	LowGQX	END=150681463	GT	./.
chr1	150683985	.	G	.	.	LowGQX	END=150684084	GT	./.
chr1	150684270	.	C	.	.	LowGQX	END=150684369	GT	./.
chr1	150686330	.	A	.	.	LowGQX	END=150686429	GT	./.
chr1	150686479	.	T	.	.	LowGQX	END=150686629	GT	./.
chr1	150687073	.	A	.	.	LowGQX	END=150687172	GT	./.
chr1	150689612	.	A	.	.	LowGQX	END=150689760	GT	./.
chr1	150691857	.	G	.	.	LowGQX	END=150692015	GT	./.
chr1	150705520	.	C	.	.	LowGQX	END=150705526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150705527	.	T	.	.	LowGQX	END=150705623	GT	./.
chr1	150720251	.	A	.	.	LowGQX	END=150720357	GT	./.
chr1	150722480	.	A	.	.	LowGQX	END=150722649	GT	./.
chr1	150724255	.	A	.	.	LowGQX	END=150724486	GT	./.
chr1	150727475	.	A	.	.	LowGQX	END=150727488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150727489	.	T	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	150727490	.	T	.	.	LowGQX	END=150727628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150730332	.	A	.	.	LowGQX	END=150730458	GT	./.
chr1	150737112	.	A	.	.	LowGQX	END=150737196	GT	./.
chr1	150737197	.	C	.	.	LowGQX	END=150737211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150737212	.	C	.	.	LowGQX	.	GT	./.
chr1	150737213	.	C	.	.	LowGQX	END=150737241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150769224	.	T	.	.	PASS	END=150769233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:80:60
chr1	150769234	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:99:60
chr1	150769235	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:75:60
chr1	150769236	.	G	.	.	PASS	END=150769299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	150769300	.	T	.	.	PASS	END=150769365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	150769366	.	T	.	.	PASS	END=150769383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	150769384	.	C	.	.	PASS	END=150769425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	150771593	.	T	.	.	PASS	END=150771598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	150771599	.	G	.	.	PASS	END=150771636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	150771637	.	T	.	.	PASS	END=150771656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	150771657	.	T	.	.	PASS	END=150771702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	150771703	.	T	C	2699.96	PASS	DP=95;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=4.7346;MQ=60;MQ0=0;QD=28.42;SB=-1513.19	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,94:95:99:2733,205,0:60:99:1.000
chr1	150771704	.	G	.	.	PASS	END=150771787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	150771788	.	C	.	.	PASS	END=150771800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	150771969	.	T	.	.	PASS	END=150771991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	150771992	.	G	.	.	PASS	END=150771996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	150771997	.	G	.	.	PASS	END=150772129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	150772130	.	C	.	.	PASS	END=150772137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	150772138	.	T	.	.	PASS	END=150772149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	150772150	.	T	.	.	PASS	END=150772180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	150772181	.	T	.	.	PASS	END=150772211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	150772212	.	C	.	.	PASS	END=150772218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	150772219	.	A	.	.	PASS	END=150772230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	150772231	.	A	.	.	PASS	END=150772236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	150776446	.	C	.	.	PASS	END=150776461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	150776462	.	C	.	.	PASS	END=150776467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	150776468	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:68:60
chr1	150776469	.	G	.	.	PASS	END=150776471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	150776472	.	G	.	.	PASS	END=150776493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	150776494	.	C	.	.	PASS	END=150776506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	150776507	.	T	.	.	PASS	END=150776530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	150776531	.	A	.	.	PASS	END=150776560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	150776561	.	G	.	.	PASS	END=150776652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	150776653	.	C	.	.	PASS	END=150776678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	150776679	.	C	.	.	PASS	END=150776702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	150776703	.	A	.	.	PASS	END=150776729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	150776730	.	G	.	.	PASS	END=150776766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	150778286	.	G	.	.	PASS	END=150778294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	150778295	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:75:60
chr1	150778296	.	A	.	.	PASS	END=150778306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	150778307	.	C	.	.	PASS	END=150778337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	150778338	.	T	.	.	PASS	END=150778472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	150778473	.	T	.	.	PASS	END=150778566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	150778567	.	G	.	.	PASS	END=150778582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	150778583	.	C	.	.	PASS	END=150778610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	150778611	.	T	.	.	PASS	END=150778711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	150778712	.	A	.	.	PASS	END=150778730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	150778731	.	A	.	.	PASS	END=150778732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	150778733	.	T	.	.	PASS	END=150778743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	150778744	.	A	.	.	PASS	END=150778751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	150779111	.	A	.	.	PASS	END=150779143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr1	150779144	.	C	.	.	PASS	END=150779221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	150779222	.	C	.	.	PASS	END=150779234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	150779235	.	A	.	.	PASS	END=150779241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	150779242	.	A	.	.	PASS	END=150779247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	150779248	.	C	.	.	PASS	END=150779264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	150779265	.	A	.	.	PASS	END=150779272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:60
chr1	150779273	.	C	.	.	PASS	END=150779284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	150779285	.	G	.	.	PASS	END=150779292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	150779293	.	A	.	.	PASS	END=150779307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	150779308	.	A	.	.	PASS	END=150779332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	150779725	.	A	.	.	LowGQX	END=150779849	GT	./.
chr1	150779850	.	A	.	.	LowGQX	END=150779900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150784492	.	T	.	.	LowGQX	END=150784591	GT	./.
chr1	150785646	.	A	.	.	LowGQX	END=150785816	GT	./.
chr1	150786551	.	A	.	.	LowGQX	END=150786717	GT	./.
chr1	150788673	.	C	.	.	LowGQX	END=150788931	GT	./.
chr1	150789262	.	A	.	.	LowGQX	END=150789421	GT	./.
chr1	150789556	.	A	.	.	LowGQX	END=150789680	GT	./.
chr1	150789830	.	A	.	.	LowGQX	END=150789929	GT	./.
chr1	150790394	.	A	.	.	LowGQX	END=150790508	GT	./.
chr1	150795668	.	A	.	.	LowGQX	END=150795766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150795767	.	T	.	.	LowGQX	END=150795776	GT	./.
chr1	150795777	.	G	.	.	LowGQX	END=150795778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150795779	.	A	.	.	LowGQX	END=150795780	GT	./.
chr1	150795781	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150795782	.	G	.	.	LowGQX	.	GT	./.
chr1	150795783	.	G	.	.	LowGQX	END=150795793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150795794	.	A	.	.	LowGQX	END=150795795	GT	./.
chr1	150795796	.	A	.	.	LowGQX	END=150795797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150795798	.	C	.	.	LowGQX	.	GT	./.
chr1	150795799	.	A	.	.	LowGQX	END=150795806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150795807	.	T	.	.	LowGQX	.	GT	./.
chr1	150795808	.	T	.	.	LowGQX	END=150795823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150799007	.	G	.	.	LowGQX	END=150799020	GT	./.
chr1	150799021	.	G	.	.	LowGQX	END=150799106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150801567	.	A	.	.	LowGQX	END=150801705	GT	./.
chr1	150801967	.	A	.	.	LowGQX	END=150802066	GT	./.
chr1	150802369	.	T	.	.	LowGQX	END=150802468	GT	./.
chr1	150804227	.	A	.	.	LowGQX	END=150804441	GT	./.
chr1	150804793	.	A	.	.	LowGQX	END=150804892	GT	./.
chr1	150807012	.	A	.	.	LowGQX	END=150807118	GT	./.
chr1	150808754	.	A	.	.	LowGQX	END=150808971	GT	./.
chr1	150811915	.	A	.	.	LowGQX	END=150812132	GT	./.
chr1	150814873	.	T	.	.	LowGQX	END=150814972	GT	./.
chr1	150818712	.	A	.	.	LowGQX	END=150818811	GT	./.
chr1	150825227	.	C	.	.	LowGQX	END=150825326	GT	./.
chr1	150825691	.	A	.	.	LowGQX	END=150825790	GT	./.
chr1	150830823	.	A	.	.	LowGQX	END=150830827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150830828	.	G	.	.	LowGQX	.	GT	./.
chr1	150830829	.	G	.	.	LowGQX	END=150830843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150830844	.	C	.	.	LowGQX	.	GT	./.
chr1	150830845	.	C	.	.	LowGQX	END=150830861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150830862	.	C	.	.	LowGQX	.	GT	./.
chr1	150830863	.	T	.	.	LowGQX	END=150830876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150830877	.	C	.	.	LowGQX	.	GT	./.
chr1	150830878	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	150830879	.	G	.	.	LowGQX	END=150830880	GT	./.
chr1	150830881	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150830882	.	C	.	.	LowGQX	END=150830883	GT	./.
chr1	150830884	.	A	.	.	LowGQX	END=150830885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150830886	.	A	.	.	LowGQX	.	GT	./.
chr1	150830887	.	G	.	.	LowGQX	END=150830888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150830889	.	T	.	.	LowGQX	.	GT	./.
chr1	150830890	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150830891	.	C	.	.	LowGQX	.	GT	./.
chr1	150830892	.	C	.	.	LowGQX	END=150830895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150830896	.	G	.	.	LowGQX	END=150830897	GT	./.
chr1	150830898	.	C	.	.	LowGQX	END=150830900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150830901	.	T	.	.	LowGQX	END=150830904	GT	./.
chr1	150830905	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150830906	.	G	.	.	LowGQX	END=150830907	GT	./.
chr1	150830908	.	A	.	.	LowGQX	END=150830910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150830911	.	C	.	.	LowGQX	.	GT	./.
chr1	150830912	.	A	.	.	LowGQX	END=150830915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150830916	.	A	.	.	LowGQX	.	GT	./.
chr1	150830917	.	T	.	.	LowGQX	END=150830921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150830922	.	C	.	.	LowGQX	.	GT	./.
chr1	150830923	.	A	.	.	LowGQX	END=150830934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150830935	.	T	.	.	LowGQX	.	GT	./.
chr1	150830936	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150830937	.	C	.	.	LowGQX	.	GT	./.
chr1	150830938	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150833701	.	A	.	.	LowGQX	END=150833800	GT	./.
chr1	150848922	.	T	.	.	LowGQX	END=150849081	GT	./.
chr1	150899164	.	G	.	.	LowGQX	END=150899319	GT	./.
chr1	150900180	.	A	.	.	LowGQX	END=150900452	GT	./.
chr1	150902441	.	A	.	.	LowGQX	END=150902445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150902446	.	A	.	.	LowGQX	END=150902596	GT	./.
chr1	150912384	.	C	.	.	LowGQX	END=150912483	GT	./.
chr1	150913803	.	A	.	.	LowGQX	END=150913906	GT	./.
chr1	150915037	.	A	.	.	LowGQX	.	GT	./.
chr1	150915038	.	G	.	.	LowGQX	END=150915043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150915044	.	T	.	.	LowGQX	.	GT	./.
chr1	150915045	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150915046	.	G	.	.	LowGQX	.	GT	./.
chr1	150915047	.	A	.	.	LowGQX	END=150915054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150915055	.	G	.	.	LowGQX	.	GT	./.
chr1	150915056	.	T	.	.	LowGQX	END=150915059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150915060	.	G	.	.	LowGQX	.	GT	./.
chr1	150915061	.	A	.	.	LowGQX	END=150915068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150915069	.	G	.	.	LowGQX	.	GT	./.
chr1	150915070	.	C	.	.	LowGQX	END=150915080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150915081	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	150915082	.	C	.	.	LowGQX	END=150915091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150915092	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	150915093	.	G	.	.	LowGQX	END=150915096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150915097	.	G	.	.	LowGQX	END=150915098	GT	./.
chr1	150915099	.	G	.	.	LowGQX	END=150915100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150915101	.	A	.	.	LowGQX	.	GT	./.
chr1	150915102	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150915103	.	T	.	.	LowGQX	.	GT	./.
chr1	150915104	.	C	.	.	LowGQX	END=150915108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150915109	.	C	.	.	LowGQX	.	GT	./.
chr1	150915110	.	A	.	.	LowGQX	END=150915111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150915112	.	G	.	.	LowGQX	.	GT	./.
chr1	150915113	.	A	.	.	LowGQX	END=150915114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150915115	.	G	.	.	LowGQX	.	GT	./.
chr1	150915116	.	A	.	.	LowGQX	END=150915123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150915124	.	G	.	.	LowGQX	END=150915126	GT	./.
chr1	150915127	.	T	.	.	LowGQX	END=150915128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150915129	.	G	.	.	LowGQX	.	GT	./.
chr1	150915130	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150915131	.	C	.	.	LowGQX	.	GT	./.
chr1	150915132	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	150915133	.	C	.	.	LowGQX	.	GT	./.
chr1	150915134	.	A	.	.	LowGQX	END=150915136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150915137	.	G	.	.	LowGQX	.	GT	./.
chr1	150915138	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150915139	.	C	.	.	LowGQX	.	GT	./.
chr1	150915140	.	A	.	.	LowGQX	END=150915147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150915148	.	T	.	.	LowGQX	.	GT	./.
chr1	150915149	.	G	.	.	LowGQX	END=150915150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150915151	.	C	.	.	LowGQX	.	GT	./.
chr1	150915152	.	A	.	.	LowGQX	END=150915153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150915154	.	C	.	.	LowGQX	END=150915157	GT	./.
chr1	150915158	.	A	.	.	LowGQX	END=150915166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150915326	.	A	.	.	LowGQX	END=150915388	GT	./.
chr1	150915389	.	C	.	.	LowGQX	END=150915531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150916394	.	A	.	.	LowGQX	END=150916495	GT	./.
chr1	150917392	.	A	.	.	LowGQX	END=150917561	GT	./.
chr1	150917562	.	G	.	.	LowGQX	END=150917638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150919360	.	A	.	.	LowGQX	END=150919490	GT	./.
chr1	150921596	.	A	.	.	LowGQX	END=150921756	GT	./.
chr1	150921843	.	A	.	.	LowGQX	END=150921882	GT	./.
chr1	150921883	.	G	.	.	LowGQX	END=150921905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150921906	.	A	.	.	LowGQX	.	GT	./.
chr1	150921907	.	C	.	.	LowGQX	END=150922003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150922932	.	A	.	.	LowGQX	END=150922946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150922947	.	T	.	.	LowGQX	END=150923378	GT	./.
chr1	150923379	.	T	.	.	LowGQX	END=150923395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150923396	.	C	.	.	LowGQX	.	GT	./.
chr1	150923397	.	A	.	.	LowGQX	END=150923399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150923400	.	A	.	.	LowGQX	.	GT	./.
chr1	150923401	.	C	.	.	LowGQX	END=150923421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150923422	.	C	.	.	LowGQX	.	GT	./.
chr1	150923423	.	C	.	.	LowGQX	END=150923435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150923436	.	A	.	.	LowGQX	.	GT	./.
chr1	150923437	.	A	.	.	LowGQX	END=150923448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150923449	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	150923450	.	A	.	.	LowGQX	END=150923457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150923458	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	150923459	.	A	.	.	LowGQX	END=150923460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150923461	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	150923462	.	C	.	.	LowGQX	END=150923494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150923495	.	C	.	.	LowGQX	.	GT	./.
chr1	150923496	.	A	.	.	LowGQX	END=150923518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150923519	.	C	.	.	LowGQX	.	GT	./.
chr1	150923520	.	C	.	.	LowGQX	END=150923531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150923532	.	G	.	.	LowGQX	.	GT	./.
chr1	150923533	.	T	.	.	LowGQX	END=150923541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150923542	.	A	.	.	LowGQX	.	GT	./.
chr1	150923543	.	C	.	.	LowGQX	END=150923546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150923547	.	A	.	.	LowGQX	END=150923549	GT	./.
chr1	150923550	.	G	.	.	LowGQX	END=150923554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150923555	.	G	.	.	LowGQX	.	GT	./.
chr1	150923556	.	T	.	.	LowGQX	END=150923557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150923558	.	T	.	.	LowGQX	END=150923559	GT	./.
chr1	150923560	.	G	.	.	LowGQX	END=150923564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150923565	.	A	.	.	LowGQX	.	GT	./.
chr1	150923566	.	A	.	.	LowGQX	END=150923568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150923839	.	A	.	.	LowGQX	END=150923959	GT	./.
chr1	150931652	.	A	.	.	LowGQX	END=150931851	GT	./.
chr1	150933037	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150933038	.	G	.	.	LowGQX	END=150933039	GT	./.
chr1	150933040	.	C	.	.	LowGQX	END=150933043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150933044	.	A	.	.	LowGQX	.	GT	./.
chr1	150933045	.	T	.	.	LowGQX	END=150933052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150933053	.	G	.	.	LowGQX	END=150933054	GT	./.
chr1	150933055	.	T	.	.	LowGQX	END=150933060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150933061	.	T	.	.	LowGQX	.	GT	./.
chr1	150933062	.	G	.	.	LowGQX	END=150933072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150933073	.	G	.	.	LowGQX	.	GT	./.
chr1	150933074	.	G	.	.	LowGQX	END=150933075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150933076	.	T	.	.	LowGQX	END=150933678	GT	./.
chr1	150934571	.	T	.	.	LowGQX	END=150934670	GT	./.
chr1	150935061	.	A	.	.	LowGQX	END=150935197	GT	./.
chr1	150935448	.	A	.	.	LowGQX	END=150935452	GT	./.
chr1	150935453	.	G	.	.	LowGQX	END=150935617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150936004	.	A	.	.	LowGQX	END=150936327	GT	./.
chr1	150936466	.	T	.	.	LowGQX	END=150936521	GT	./.
chr1	150936522	.	G	.	.	LowGQX	END=150936565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150936722	.	G	.	.	LowGQX	END=150936764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150936765	.	C	.	.	LowGQX	END=150936842	GT	./.
chr1	150936867	.	T	.	.	LowGQX	END=150936966	GT	./.
chr1	150938571	.	G	.	.	LowGQX	END=150938811	GT	./.
chr1	150938950	.	A	.	.	LowGQX	END=150939107	GT	./.
chr1	150939230	.	A	.	.	LowGQX	END=150939340	GT	./.
chr1	150939543	.	G	.	.	LowGQX	END=150939630	GT	./.
chr1	150939631	.	G	.	.	LowGQX	END=150939678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150939679	.	C	.	.	LowGQX	.	GT	./.
chr1	150939680	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150939865	.	C	.	.	LowGQX	END=150939964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150940116	.	C	.	.	LowGQX	END=150940215	GT	./.
chr1	150940275	.	C	.	.	LowGQX	END=150940374	GT	./.
chr1	150940557	.	A	.	.	LowGQX	END=150940679	GT	./.
chr1	150940869	.	A	.	.	LowGQX	END=150940990	GT	./.
chr1	150941392	.	A	.	.	LowGQX	END=150941568	GT	./.
chr1	150944305	.	A	.	.	LowGQX	END=150944395	GT	./.
chr1	150944396	.	G	.	.	LowGQX	END=150944404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150955570	.	A	.	.	LowGQX	END=150955571	GT	./.
chr1	150955572	.	C	.	.	LowGQX	END=150955588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150955589	.	T	.	.	LowGQX	.	GT	./.
chr1	150955590	.	G	.	.	LowGQX	END=150955600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150955601	.	A	.	.	LowGQX	.	GT	./.
chr1	150955602	.	G	.	.	LowGQX	END=150955613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150955614	.	C	.	.	LowGQX	.	GT	./.
chr1	150955615	.	C	.	.	LowGQX	END=150955617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150955618	.	A	.	.	LowGQX	.	GT	./.
chr1	150955619	.	C	.	.	LowGQX	END=150955622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150955623	.	G	.	.	LowGQX	END=150955624	GT	./.
chr1	150955625	.	A	.	.	LowGQX	END=150955635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150955636	.	C	.	.	LowGQX	END=150955638	GT	./.
chr1	150955639	.	C	.	.	LowGQX	END=150955640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150955641	.	G	.	.	LowGQX	.	GT	./.
chr1	150955642	.	G	.	.	LowGQX	END=150955646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150955647	.	G	.	.	LowGQX	END=150955648	GT	./.
chr1	150955649	.	C	.	.	LowGQX	END=150955669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150955812	.	A	.	.	LowGQX	END=150955902	GT	./.
chr1	150955903	.	T	.	.	LowGQX	END=150955912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150956389	.	G	.	.	LowGQX	END=150956548	GT	./.
chr1	150956755	.	A	.	.	LowGQX	END=150956872	GT	./.
chr1	150957058	.	G	.	.	LowGQX	END=150957157	GT	./.
chr1	150958802	.	C	.	.	LowGQX	END=150958901	GT	./.
chr1	150959006	.	G	.	.	LowGQX	END=150959157	GT	./.
chr1	150960341	.	C	.	.	LowGQX	END=150960410	GT	./.
chr1	150960411	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150960412	.	A	.	.	LowGQX	END=150960413	GT	./.
chr1	150960414	.	C	.	.	LowGQX	END=150960416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150960417	.	G	.	.	LowGQX	END=150960418	GT	./.
chr1	150960419	.	A	.	.	LowGQX	END=150960420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150960421	.	A	.	.	LowGQX	END=150960424	GT	./.
chr1	150960425	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150960426	.	A	.	.	LowGQX	END=150960428	GT	./.
chr1	150960429	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150960430	.	G	.	.	LowGQX	.	GT	./.
chr1	150960431	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150960432	.	G	.	.	LowGQX	END=150960433	GT	./.
chr1	150960434	.	T	.	.	LowGQX	END=150960435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150960436	.	C	.	.	LowGQX	END=150960439	GT	./.
chr1	150960440	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150960565	.	A	.	.	LowGQX	END=150960660	GT	./.
chr1	150960661	.	A	.	.	LowGQX	END=150960664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150960739	.	C	.	.	LowGQX	END=150960820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150960821	.	A	.	.	LowGQX	END=150960838	GT	./.
chr1	150967051	.	A	.	.	LowGQX	END=150967177	GT	./.
chr1	150967718	.	G	.	.	LowGQX	END=150967802	GT	./.
chr1	150967803	.	T	.	.	LowGQX	END=150967813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150967814	.	C	.	.	LowGQX	.	GT	./.
chr1	150967815	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150967816	.	C	.	.	LowGQX	.	GT	./.
chr1	150967817	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150969754	.	G	.	.	LowGQX	END=150969853	GT	./.
chr1	150969920	.	G	.	.	LowGQX	.	GT	./.
chr1	150969921	.	G	.	.	LowGQX	END=150969934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150969935	.	G	.	.	LowGQX	.	GT	./.
chr1	150969936	.	T	.	.	LowGQX	END=150969961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150969962	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	150969963	.	C	.	.	LowGQX	END=150969993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150969994	.	T	.	.	LowGQX	.	GT	./.
chr1	150969995	.	G	.	.	LowGQX	END=150970003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150970004	.	A	.	.	LowGQX	.	GT	./.
chr1	150970005	.	A	.	.	LowGQX	END=150970008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150970009	.	T	.	.	LowGQX	.	GT	./.
chr1	150970010	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150970011	.	A	.	.	LowGQX	.	GT	./.
chr1	150970012	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150970013	.	G	.	.	LowGQX	.	GT	./.
chr1	150970014	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150970015	.	G	.	.	LowGQX	END=150970016	GT	./.
chr1	150970017	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150970018	.	C	.	.	LowGQX	END=150970019	GT	./.
chr1	150970020	.	G	.	.	LowGQX	END=150970026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150970027	.	A	.	.	LowGQX	.	GT	./.
chr1	150970028	.	A	.	.	LowGQX	END=150970032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150970033	.	A	.	.	LowGQX	END=150970034	GT	./.
chr1	150970035	.	G	.	.	LowGQX	END=150970036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150970037	.	G	.	.	LowGQX	END=150970038	GT	./.
chr1	150970039	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150970040	.	C	.	.	LowGQX	END=150970041	GT	./.
chr1	150970042	.	G	.	.	LowGQX	END=150970043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150970044	.	A	.	.	LowGQX	.	GT	./.
chr1	150970045	.	C	.	.	LowGQX	END=150970051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150970052	.	A	.	.	LowGQX	.	GT	./.
chr1	150970053	.	A	.	.	LowGQX	END=150970055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150970056	.	A	.	.	LowGQX	.	GT	./.
chr1	150970057	.	T	.	.	LowGQX	END=150970059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150970060	.	G	.	.	LowGQX	END=150970061	GT	./.
chr1	150970062	.	T	.	.	LowGQX	END=150970065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150970066	.	A	.	.	LowGQX	END=150970067	GT	./.
chr1	150970068	.	C	.	.	LowGQX	END=150970071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150970072	.	G	.	.	LowGQX	END=150970257	GT	./.
chr1	150970556	.	A	.	.	LowGQX	END=150970751	GT	./.
chr1	150971843	.	A	.	.	LowGQX	END=150971910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150971911	.	A	.	.	LowGQX	.	GT	./.
chr1	150971912	.	G	.	.	LowGQX	END=150971933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150971934	.	C	.	.	LowGQX	.	GT	./.
chr1	150971935	.	G	.	.	LowGQX	END=150971944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150971945	.	A	.	.	LowGQX	.	GT	./.
chr1	150971946	.	G	.	.	LowGQX	END=150971956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150971957	.	G	.	.	LowGQX	END=150971972	GT	./.
chr1	150971973	.	G	.	.	LowGQX	END=150971974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150971975	.	T	.	.	LowGQX	END=150971977	GT	./.
chr1	150971978	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150971979	.	C	.	.	LowGQX	.	GT	./.
chr1	150971980	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150971981	.	A	.	.	LowGQX	END=150971984	GT	./.
chr1	150971985	.	G	.	.	LowGQX	END=150971987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150971988	.	C	.	.	LowGQX	.	GT	./.
chr1	150971989	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150972336	.	A	.	.	LowGQX	END=150972442	GT	./.
chr1	150972931	.	A	.	.	LowGQX	END=150973093	GT	./.
chr1	150973709	.	C	.	.	LowGQX	END=150973808	GT	./.
chr1	150974129	.	G	.	.	LowGQX	END=150974279	GT	./.
chr1	150974639	.	A	.	.	LowGQX	END=150975182	GT	./.
chr1	150978554	.	C	.	.	LowGQX	END=150978653	GT	./.
chr1	150981079	.	C	.	.	LowGQX	END=150981178	GT	./.
chr1	150981278	.	C	.	.	LowGQX	END=150981377	GT	./.
chr1	150990285	.	C	.	.	LowGQX	END=150990384	GT	./.
chr1	150990788	.	C	.	.	LowGQX	END=150990887	GT	./.
chr1	150990941	.	A	.	.	LowGQX	END=150991147	GT	./.
chr1	150997084	.	C	.	.	LowGQX	END=150997273	GT	./.
chr1	150997989	.	A	.	.	LowGQX	END=150998151	GT	./.
chr1	150999707	.	A	.	.	LowGQX	END=150999734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	150999735	.	A	.	.	LowGQX	.	GT	./.
chr1	150999736	.	A	.	.	LowGQX	END=150999765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	150999766	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	150999767	.	C	.	.	LowGQX	END=150999773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	150999774	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	150999775	.	C	.	.	LowGQX	END=150999806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	151001260	.	A	.	.	LowGQX	END=151001422	GT	./.
chr1	151006280	.	A	.	.	LowGQX	END=151006281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006282	.	A	.	.	LowGQX	.	GT	./.
chr1	151006283	.	T	.	.	LowGQX	END=151006286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006287	.	T	.	.	LowGQX	END=151006288	GT	./.
chr1	151006289	.	A	.	.	LowGQX	END=151006295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006296	.	G	.	.	LowGQX	.	GT	./.
chr1	151006297	.	G	.	.	LowGQX	END=151006303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006304	.	C	.	.	LowGQX	.	GT	./.
chr1	151006305	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006306	.	C	.	.	LowGQX	.	GT	./.
chr1	151006307	.	A	.	.	LowGQX	END=151006314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006315	.	C	.	.	LowGQX	.	GT	./.
chr1	151006316	.	C	.	.	LowGQX	END=151006319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006320	.	G	.	.	LowGQX	.	GT	./.
chr1	151006321	.	A	.	.	LowGQX	END=151006322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006323	.	G	.	.	LowGQX	END=151006324	GT	./.
chr1	151006325	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006326	.	G	.	.	LowGQX	.	GT	./.
chr1	151006327	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006328	.	C	.	.	LowGQX	END=151006330	GT	./.
chr1	151006331	.	C	.	.	LowGQX	END=151006334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006335	.	C	.	.	LowGQX	.	GT	./.
chr1	151006336	.	T	.	.	LowGQX	END=151006342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006343	.	C	.	.	LowGQX	.	GT	./.
chr1	151006344	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151006345	.	C	.	.	LowGQX	END=151006378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151006379	.	C	.	.	LowGQX	.	GT	./.
chr1	151006380	.	C	.	.	LowGQX	END=151006383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151006384	.	G	.	.	LowGQX	.	GT	./.
chr1	151006385	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151006386	.	C	.	.	LowGQX	END=151006398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151006399	.	C	.	.	LowGQX	.	GT	./.
chr1	151006400	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006401	.	T	.	.	LowGQX	.	GT	./.
chr1	151006402	.	C	.	.	LowGQX	END=151006410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006411	.	C	.	.	LowGQX	.	GT	./.
chr1	151006412	.	T	.	.	LowGQX	END=151006418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006419	.	A	.	.	LowGQX	.	GT	./.
chr1	151006420	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006421	.	C	.	.	LowGQX	.	GT	./.
chr1	151006422	.	C	.	.	LowGQX	END=151006426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006427	.	C	.	.	LowGQX	.	GT	./.
chr1	151006428	.	A	.	.	LowGQX	END=151006442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006443	.	C	.	.	LowGQX	.	GT	./.
chr1	151006444	.	A	.	.	LowGQX	END=151006449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006450	.	A	.	.	LowGQX	.	GT	./.
chr1	151006451	.	T	.	.	LowGQX	END=151006452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006453	.	C	.	.	LowGQX	.	GT	./.
chr1	151006454	.	C	.	.	LowGQX	END=151006471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006472	.	C	.	.	LowGQX	.	GT	./.
chr1	151006473	.	A	.	.	LowGQX	END=151006480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006481	.	T	.	.	LowGQX	.	GT	./.
chr1	151006482	.	G	.	.	LowGQX	END=151006490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151006491	.	G	.	.	LowGQX	END=151006712	GT	./.
chr1	151009173	.	T	.	.	LowGQX	END=151009272	GT	./.
chr1	151010041	.	A	.	.	LowGQX	END=151010044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151010045	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151010046	.	C	.	.	LowGQX	END=151010084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151010085	.	G	.	.	LowGQX	.	GT	./.
chr1	151010086	.	A	.	.	LowGQX	END=151010098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151010099	.	T	.	.	LowGQX	.	GT	./.
chr1	151010100	.	G	.	.	LowGQX	END=151010140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151010963	.	A	.	.	LowGQX	END=151011062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151011270	.	A	.	.	LowGQX	END=151011504	GT	./.
chr1	151015430	.	A	.	.	LowGQX	END=151015565	GT	./.
chr1	151015566	.	G	.	.	LowGQX	END=151015659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151015806	.	A	.	.	LowGQX	END=151015807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151015808	.	G	.	.	LowGQX	.	GT	./.
chr1	151015809	.	T	.	.	LowGQX	END=151015820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151015821	.	T	.	.	LowGQX	.	GT	./.
chr1	151015822	.	G	.	.	LowGQX	END=151015834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151015835	.	T	.	.	LowGQX	.	GT	./.
chr1	151015836	.	C	.	.	LowGQX	END=151015867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151015868	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	151015869	.	C	.	.	LowGQX	END=151015912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151016070	.	A	.	.	LowGQX	END=151016205	GT	./.
chr1	151017310	.	T	.	.	LowGQX	END=151017315	GT	./.
chr1	151017316	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151017317	.	C	.	.	LowGQX	.	GT	./.
chr1	151017318	.	T	.	.	LowGQX	END=151017320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151017321	.	C	.	.	LowGQX	END=151017325	GT	./.
chr1	151017326	.	T	.	.	LowGQX	END=151017327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151017328	.	T	.	.	LowGQX	END=151017329	GT	./.
chr1	151017330	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151017331	.	T	.	.	LowGQX	END=151017334	GT	./.
chr1	151017335	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151017336	.	G	.	.	LowGQX	END=151017339	GT	./.
chr1	151017340	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151017341	.	T	.	.	LowGQX	END=151017345	GT	./.
chr1	151017346	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151017347	.	T	.	.	LowGQX	END=151017354	GT	./.
chr1	151017355	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151017356	.	A	.	.	LowGQX	END=151017357	GT	./.
chr1	151017358	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151017359	.	T	.	.	LowGQX	END=151017360	GT	./.
chr1	151017361	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151017362	.	A	.	.	LowGQX	END=151017366	GT	./.
chr1	151017367	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151017368	.	A	.	.	LowGQX	.	GT	./.
chr1	151017369	.	A	.	.	LowGQX	END=151017370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151017371	.	C	.	.	LowGQX	END=151017409	GT	./.
chr1	151018267	.	T	.	.	LowGQX	END=151018273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151018274	.	C	.	.	LowGQX	.	GT	./.
chr1	151018275	.	T	.	.	LowGQX	END=151018283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151018284	.	A	.	.	LowGQX	.	GT	./.
chr1	151018285	.	C	.	.	LowGQX	END=151018290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151018291	.	A	.	.	LowGQX	.	GT	./.
chr1	151018292	.	G	.	.	LowGQX	END=151018338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151018339	.	A	.	.	LowGQX	.	GT	./.
chr1	151018340	.	C	.	.	LowGQX	END=151018345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151018346	.	C	.	.	LowGQX	END=151018366	GT	./.
chr1	151018541	.	A	.	.	LowGQX	END=151018586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151018587	.	A	.	.	LowGQX	END=151018643	GT	./.
chr1	151019096	.	C	.	.	LowGQX	END=151019157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151019158	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151019159	.	C	.	.	LowGQX	END=151019176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151019177	.	A	.	.	LowGQX	END=151019195	GT	./.
chr1	151020322	.	C	.	.	LowGQX	END=151020366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020367	.	A	.	.	LowGQX	.	GT	./.
chr1	151020368	.	T	.	.	LowGQX	END=151020393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020394	.	A	.	.	LowGQX	.	GT	./.
chr1	151020395	.	A	.	.	LowGQX	END=151020401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020402	.	A	.	.	LowGQX	.	GT	./.
chr1	151020403	.	C	.	.	LowGQX	END=151020405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020406	.	A	.	.	LowGQX	.	GT	./.
chr1	151020407	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020408	.	A	.	.	LowGQX	.	GT	./.
chr1	151020409	.	C	.	.	LowGQX	END=151020410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020411	.	C	.	.	LowGQX	.	GT	./.
chr1	151020412	.	C	.	.	LowGQX	END=151020413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020414	.	A	.	.	LowGQX	.	GT	./.
chr1	151020415	.	C	.	.	LowGQX	END=151020433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020434	.	T	.	.	LowGQX	.	GT	./.
chr1	151020435	.	T	.	.	LowGQX	END=151020436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020437	.	A	.	.	LowGQX	.	GT	./.
chr1	151020438	.	C	.	.	LowGQX	END=151020452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020453	.	A	.	.	LowGQX	.	GT	./.
chr1	151020454	.	T	.	.	LowGQX	END=151020455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020456	.	A	.	.	LowGQX	.	GT	./.
chr1	151020457	.	C	.	.	LowGQX	END=151020461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020462	.	A	.	.	LowGQX	.	GT	./.
chr1	151020463	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020464	.	C	.	.	LowGQX	END=151020632	GT	./.
chr1	151020633	.	G	.	.	LowGQX	END=151020634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020635	.	T	.	.	LowGQX	.	GT	./.
chr1	151020636	.	G	.	.	LowGQX	END=151020647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020648	.	G	.	.	LowGQX	.	GT	./.
chr1	151020649	.	A	.	.	LowGQX	END=151020654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020655	.	T	.	.	LowGQX	.	GT	./.
chr1	151020656	.	T	.	.	LowGQX	END=151020660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020661	.	T	.	.	LowGQX	.	GT	./.
chr1	151020662	.	T	.	.	LowGQX	END=151020665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020666	.	G	.	.	LowGQX	.	GT	./.
chr1	151020667	.	C	.	.	LowGQX	END=151020673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020674	.	G	.	.	LowGQX	.	GT	./.
chr1	151020675	.	G	.	.	LowGQX	END=151020782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151020783	.	C	.	.	LowGQX	END=151020858	GT	./.
chr1	151020859	.	G	.	.	LowGQX	END=151021042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151021043	.	G	.	.	LowGQX	END=151021095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	151021096	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	151021097	.	T	.	.	LowGQX	END=151021119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151021120	.	C	.	.	LowGQX	.	GT	./.
chr1	151021121	.	A	.	.	LowGQX	END=151021137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151021138	.	C	.	.	LowGQX	.	GT	./.
chr1	151021139	.	C	.	.	LowGQX	END=151021157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151021158	.	A	.	.	LowGQX	END=151021343	GT	./.
chr1	151022875	.	T	.	.	LowGQX	END=151022974	GT	./.
chr1	151026711	.	C	.	.	LowGQX	END=151026810	GT	./.
chr1	151027490	.	A	.	.	LowGQX	END=151027567	GT	./.
chr1	151027568	.	A	.	.	LowGQX	END=151027604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151028130	.	G	.	.	LowGQX	END=151028229	GT	./.
chr1	151039699	.	C	.	.	LowGQX	END=151039708	GT	./.
chr1	151039709	.	C	.	.	LowGQX	END=151039808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151039809	.	A	.	.	LowGQX	END=151039975	GT	./.
chr1	151060664	.	A	.	.	LowGQX	END=151060689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151060690	.	A	.	.	LowGQX	.	GT	./.
chr1	151060691	.	G	.	.	LowGQX	END=151060764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151060765	.	A	.	.	LowGQX	END=151060775	GT	./.
chr1	151060920	.	A	.	.	LowGQX	END=151061019	GT	./.
chr1	151062880	.	A	.	.	LowGQX	END=151062900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	151062901	.	A	.	.	LowGQX	END=151062984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151062985	.	A	.	.	LowGQX	.	GT	./.
chr1	151062986	.	C	.	.	LowGQX	END=151063031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151063032	.	G	.	.	LowGQX	END=151063033	GT	./.
chr1	151063034	.	G	.	.	LowGQX	END=151063044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151063045	.	T	.	.	LowGQX	.	GT	./.
chr1	151063046	.	T	.	.	LowGQX	END=151063051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151065666	.	A	.	.	LowGQX	END=151065820	GT	./.
chr1	151065821	.	G	.	.	LowGQX	END=151065864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151070326	.	A	.	.	LowGQX	END=151070480	GT	./.
chr1	151076036	.	A	.	.	LowGQX	END=151076153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151079511	.	A	.	.	LowGQX	END=151079700	GT	./.
chr1	151089866	.	A	.	.	LowGQX	END=151089875	GT	./.
chr1	151089876	.	G	.	.	LowGQX	END=151089994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090431	.	A	.	.	LowGQX	END=151090433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090434	.	A	.	.	LowGQX	.	GT	./.
chr1	151090435	.	A	.	.	LowGQX	END=151090438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090439	.	A	.	.	LowGQX	.	GT	./.
chr1	151090440	.	A	.	.	LowGQX	END=151090447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090448	.	G	.	.	LowGQX	.	GT	./.
chr1	151090449	.	A	.	.	LowGQX	END=151090450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090451	.	C	.	.	LowGQX	.	GT	./.
chr1	151090452	.	T	.	.	LowGQX	END=151090458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090459	.	G	.	.	LowGQX	END=151090460	GT	./.
chr1	151090461	.	A	.	.	LowGQX	END=151090475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090476	.	C	.	.	LowGQX	.	GT	./.
chr1	151090477	.	C	.	.	LowGQX	END=151090479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151090480	.	T	.	.	LowGQX	.	GT	./.
chr1	151090481	.	C	.	.	LowGQX	END=151090482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090483	.	A	.	.	LowGQX	.	GT	./.
chr1	151090484	.	A	.	.	LowGQX	END=151090502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090503	.	A	.	.	LowGQX	.	GT	./.
chr1	151090504	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090505	.	C	.	.	LowGQX	.	GT	./.
chr1	151090506	.	A	.	.	LowGQX	END=151090507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090508	.	C	.	.	LowGQX	.	GT	./.
chr1	151090509	.	T	.	.	LowGQX	END=151090512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090513	.	A	.	.	LowGQX	END=151090514	GT	./.
chr1	151090515	.	A	.	.	LowGQX	END=151090520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090521	.	A	.	.	LowGQX	.	GT	./.
chr1	151090522	.	G	.	.	LowGQX	END=151090533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090534	.	A	.	.	LowGQX	END=151090535	GT	./.
chr1	151090536	.	A	.	.	LowGQX	END=151090547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090548	.	A	.	.	LowGQX	.	GT	./.
chr1	151090549	.	G	.	.	LowGQX	END=151090557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090558	.	C	.	.	LowGQX	.	GT	./.
chr1	151090559	.	A	.	.	LowGQX	END=151090575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090576	.	C	.	.	LowGQX	.	GT	./.
chr1	151090577	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090578	.	A	.	.	LowGQX	.	GT	./.
chr1	151090579	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090580	.	G	.	.	LowGQX	.	GT	./.
chr1	151090581	.	G	.	.	LowGQX	END=151090582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090583	.	G	.	.	LowGQX	.	GT	./.
chr1	151090584	.	T	.	.	LowGQX	END=151090586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090587	.	A	.	.	LowGQX	.	GT	./.
chr1	151090588	.	T	.	.	LowGQX	END=151090593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090594	.	C	.	.	LowGQX	.	GT	./.
chr1	151090595	.	A	.	.	LowGQX	END=151090596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090597	.	G	.	.	LowGQX	.	GT	./.
chr1	151090598	.	G	.	.	LowGQX	END=151090599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090600	.	T	.	.	LowGQX	.	GT	./.
chr1	151090601	.	G	.	.	LowGQX	END=151090604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090605	.	A	.	.	LowGQX	.	GT	./.
chr1	151090606	.	G	.	.	LowGQX	END=151090609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090610	.	G	.	.	LowGQX	.	GT	./.
chr1	151090611	.	C	.	.	LowGQX	END=151090616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090617	.	T	.	.	LowGQX	.	GT	./.
chr1	151090618	.	A	.	.	LowGQX	END=151090621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151090622	.	G	.	.	LowGQX	END=151090734	GT	./.
chr1	151104661	.	C	.	.	LowGQX	END=151105995	GT	./.
chr1	151106374	.	G	.	.	LowGQX	END=151106533	GT	./.
chr1	151106850	.	A	.	.	LowGQX	END=151106854	GT	./.
chr1	151106855	.	A	.	.	LowGQX	END=151106918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151106919	.	C	.	.	LowGQX	END=151106949	GT	./.
chr1	151107074	.	A	.	.	LowGQX	END=151107173	GT	./.
chr1	151107263	.	C	.	.	LowGQX	END=151107362	GT	./.
chr1	151107637	.	A	.	.	LowGQX	END=151107647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151107648	.	G	.	.	LowGQX	END=151107733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	151107734	.	C	.	.	LowGQX	END=151107787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	151108065	.	A	.	.	LowGQX	END=151108242	GT	./.
chr1	151108485	.	A	.	.	LowGQX	END=151108641	GT	./.
chr1	151108922	.	A	.	.	LowGQX	END=151109057	GT	./.
chr1	151109331	.	A	.	.	LowGQX	END=151109552	GT	./.
chr1	151110182	.	C	.	.	LowGQX	END=151110186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151110187	.	C	.	.	LowGQX	END=151110204	GT	./.
chr1	151110205	.	C	.	.	LowGQX	END=151110281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151110460	.	A	.	.	LowGQX	END=151110583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151110788	.	A	.	.	LowGQX	END=151110887	GT	./.
chr1	151111104	.	A	.	.	LowGQX	END=151111209	GT	./.
chr1	151111880	.	C	.	.	LowGQX	END=151111979	GT	./.
chr1	151112096	.	T	.	.	LowGQX	END=151112110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112111	.	C	.	.	LowGQX	.	GT	./.
chr1	151112112	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112113	.	C	.	.	LowGQX	.	GT	./.
chr1	151112114	.	C	.	.	LowGQX	END=151112116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112117	.	G	.	.	LowGQX	END=151112118	GT	./.
chr1	151112119	.	T	.	.	LowGQX	END=151112122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112123	.	C	.	.	LowGQX	.	GT	./.
chr1	151112124	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112125	.	C	.	.	LowGQX	.	GT	./.
chr1	151112126	.	C	.	.	LowGQX	END=151112128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112129	.	C	.	.	LowGQX	END=151112130	GT	./.
chr1	151112131	.	C	.	.	LowGQX	END=151112134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112135	.	C	.	.	LowGQX	.	GT	./.
chr1	151112136	.	C	.	.	LowGQX	END=151112137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112138	.	T	.	.	LowGQX	.	GT	./.
chr1	151112139	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112140	.	C	.	.	LowGQX	END=151112141	GT	./.
chr1	151112142	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112143	.	C	.	.	LowGQX	.	GT	./.
chr1	151112144	.	T	.	.	LowGQX	END=151112145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112146	.	C	.	.	LowGQX	END=151112148	GT	./.
chr1	151112149	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112150	.	T	.	.	LowGQX	END=151112151	GT	./.
chr1	151112152	.	G	.	.	LowGQX	END=151112155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112156	.	A	.	.	LowGQX	END=151112158	GT	./.
chr1	151112159	.	G	.	.	LowGQX	END=151112161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112162	.	G	.	.	LowGQX	END=151112165	GT	./.
chr1	151112166	.	A	.	.	LowGQX	END=151112170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112171	.	G	.	.	LowGQX	END=151112174	GT	./.
chr1	151112175	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112176	.	C	.	.	LowGQX	END=151112177	GT	./.
chr1	151112178	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112179	.	T	.	.	LowGQX	.	GT	./.
chr1	151112180	.	G	.	.	LowGQX	END=151112181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112182	.	G	.	.	LowGQX	END=151112183	GT	./.
chr1	151112184	.	G	.	.	LowGQX	END=151112186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112187	.	T	.	.	LowGQX	.	GT	./.
chr1	151112188	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112189	.	G	.	.	LowGQX	END=151112190	GT	./.
chr1	151112191	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112192	.	A	.	.	LowGQX	.	GT	./.
chr1	151112193	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112194	.	G	.	.	LowGQX	.	GT	./.
chr1	151112195	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151112450	.	A	.	.	LowGQX	END=151112568	GT	./.
chr1	151114917	.	C	.	.	LowGQX	END=151115099	GT	./.
chr1	151131172	.	C	.	.	LowGQX	END=151131321	GT	./.
chr1	151131322	.	C	.	.	LowGQX	END=151131395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151131396	.	C	.	.	LowGQX	.	GT	./.
chr1	151131397	.	G	.	.	LowGQX	END=151131487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151131488	.	T	.	.	LowGQX	.	GT	./.
chr1	151131489	.	G	.	.	LowGQX	END=151131549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151131550	.	T	.	.	LowGQX	END=151131730	GT	./.
chr1	151133356	.	C	.	.	LowGQX	END=151133498	GT	./.
chr1	151134200	.	T	.	.	LowGQX	END=151134221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151134222	.	C	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr1	151134223	.	T	.	.	LowGQX	END=151134257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151134258	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	151134259	.	G	.	.	LowGQX	END=151134260	GT	./.
chr1	151134261	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151134262	.	G	.	.	LowGQX	.	GT	./.
chr1	151134263	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151134264	.	T	.	.	LowGQX	.	GT	./.
chr1	151134265	.	C	.	.	LowGQX	END=151134273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151134274	.	A	.	.	LowGQX	.	GT	./.
chr1	151134275	.	A	.	.	LowGQX	END=151134297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151134298	.	A	.	.	LowGQX	END=151134299	GT	./.
chr1	151134300	.	A	.	.	LowGQX	END=151134305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151134306	.	C	.	.	LowGQX	.	GT	./.
chr1	151134307	.	A	.	.	LowGQX	END=151134315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151134316	.	C	.	.	LowGQX	.	GT	./.
chr1	151134317	.	G	.	.	LowGQX	END=151134321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151134322	.	G	.	.	LowGQX	.	GT	./.
chr1	151134323	.	G	.	.	LowGQX	END=151134324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151134325	.	T	.	.	LowGQX	END=151134326	GT	./.
chr1	151134327	.	C	.	.	LowGQX	END=151134331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151134332	.	C	.	.	LowGQX	END=151134334	GT	./.
chr1	151134335	.	G	.	.	LowGQX	END=151134344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151134345	.	G	.	.	LowGQX	.	GT	./.
chr1	151134346	.	G	.	.	LowGQX	END=151134350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151134351	.	C	.	.	LowGQX	.	GT	./.
chr1	151134352	.	A	.	.	LowGQX	END=151134353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151134354	.	C	.	.	LowGQX	END=151134579	GT	./.
chr1	151137553	.	A	.	.	LowGQX	END=151137602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151137603	.	C	.	.	LowGQX	.	GT	./.
chr1	151137604	.	A	.	.	LowGQX	END=151137689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151137690	.	C	.	.	LowGQX	END=151137736	GT	./.
chr1	151138191	.	G	.	.	LowGQX	END=151138263	GT	./.
chr1	151138264	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151138265	.	G	.	.	LowGQX	.	GT	./.
chr1	151138266	.	G	.	.	LowGQX	END=151138267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151138268	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151138269	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151138270	.	C	.	.	LowGQX	.	GT	./.
chr1	151138271	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151138272	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151138273	.	C	.	.	LowGQX	END=151138274	GT	./.
chr1	151138275	.	T	.	.	LowGQX	END=151138282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151138283	.	C	.	.	LowGQX	.	GT	./.
chr1	151138284	.	G	.	.	LowGQX	END=151138287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151138288	.	C	.	.	LowGQX	END=151138289	GT	./.
chr1	151138290	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151138605	.	T	.	.	LowGQX	END=151138704	GT	./.
chr1	151138933	.	C	.	.	LowGQX	END=151139032	GT	./.
chr1	151139405	.	C	.	.	LowGQX	END=151139504	GT	./.
chr1	151139595	.	A	.	.	LowGQX	END=151139696	GT	./.
chr1	151139800	.	A	.	.	LowGQX	END=151139981	GT	./.
chr1	151140618	.	A	.	.	LowGQX	END=151140752	GT	./.
chr1	151140753	.	G	.	.	LowGQX	END=151140767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151140768	.	A	.	.	LowGQX	.	GT	./.
chr1	151140769	.	G	.	.	LowGQX	END=151140781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151140782	.	A	.	.	LowGQX	.	GT	./.
chr1	151140783	.	C	.	.	LowGQX	END=151140792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151140793	.	A	.	.	LowGQX	.	GT	./.
chr1	151140794	.	C	.	.	LowGQX	END=151140795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151140796	.	A	.	.	LowGQX	.	GT	./.
chr1	151140797	.	T	.	.	LowGQX	END=151140803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151140804	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151140805	.	C	.	.	LowGQX	END=151140816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151141460	.	A	.	.	LowGQX	END=151141563	GT	./.
chr1	151142519	.	A	.	.	LowGQX	END=151142618	GT	./.
chr1	151142993	.	A	.	.	LowGQX	END=151143141	GT	./.
chr1	151143394	.	A	.	.	LowGQX	END=151143470	GT	./.
chr1	151143471	.	G	.	.	LowGQX	END=151143541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151143907	.	A	.	.	LowGQX	END=151143911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	151143912	.	G	.	.	LowGQX	END=151143929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	151143930	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	151143931	.	C	.	.	LowGQX	END=151143970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151143971	.	C	.	.	LowGQX	.	GT	./.
chr1	151143972	.	C	.	.	LowGQX	END=151143980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151143981	.	C	.	.	LowGQX	.	GT	./.
chr1	151143982	.	T	.	.	LowGQX	END=151143999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151144000	.	A	.	.	LowGQX	END=151144018	GT	./.
chr1	151144107	.	A	.	.	LowGQX	END=151144241	GT	./.
chr1	151144739	.	C	.	.	LowGQX	END=151144838	GT	./.
chr1	151145973	.	A	.	.	LowGQX	END=151146093	GT	./.
chr1	151146865	.	A	.	.	LowGQX	END=151147025	GT	./.
chr1	151147227	.	A	.	.	LowGQX	END=151147236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151147237	.	C	.	.	LowGQX	.	GT	./.
chr1	151147238	.	C	.	.	LowGQX	END=151147255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151147256	.	G	.	.	LowGQX	.	GT	./.
chr1	151147257	.	T	.	.	LowGQX	END=151147353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151149118	.	C	.	.	LowGQX	END=151149540	GT	./.
chr1	151150473	.	T	.	.	LowGQX	END=151150609	GT	./.
chr1	151150610	.	G	.	.	LowGQX	END=151150623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151156791	.	A	.	.	LowGQX	.	GT	./.
chr1	151156792	.	C	.	.	LowGQX	END=151156821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151156822	.	A	.	.	LowGQX	.	GT	./.
chr1	151156823	.	T	.	.	LowGQX	END=151156877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151156878	.	C	.	.	LowGQX	END=151156971	GT	./.
chr1	151157980	.	A	.	.	LowGQX	END=151158098	GT	./.
chr1	151158272	.	A	.	.	LowGQX	END=151158428	GT	./.
chr1	151162479	.	G	.	.	LowGQX	END=151162599	GT	./.
chr1	151170494	.	A	.	.	LowGQX	END=151170593	GT	./.
chr1	151171471	.	A	.	.	LowGQX	END=151171589	GT	./.
chr1	151188408	.	A	.	.	LowGQX	END=151188507	GT	./.
chr1	151196689	.	C	.	.	LowGQX	END=151196703	GT	./.
chr1	151196704	.	T	.	.	LowGQX	END=151196706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151196707	.	T	.	.	LowGQX	.	GT	./.
chr1	151196708	.	T	.	.	LowGQX	END=151196709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151196710	.	T	.	.	LowGQX	.	GT	./.
chr1	151196711	.	T	.	.	LowGQX	END=151196722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151196723	.	G	.	.	LowGQX	.	GT	./.
chr1	151196724	.	C	.	.	LowGQX	END=151196732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151196733	.	T	.	.	LowGQX	.	GT	./.
chr1	151196734	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151196735	.	A	.	.	LowGQX	.	GT	./.
chr1	151196736	.	A	.	.	LowGQX	END=151196741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151196742	.	C	.	.	LowGQX	.	GT	./.
chr1	151196743	.	C	.	.	LowGQX	END=151196744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151196745	.	T	.	.	LowGQX	.	GT	./.
chr1	151196746	.	G	.	.	LowGQX	END=151196757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151196758	.	G	.	.	LowGQX	.	GT	./.
chr1	151196759	.	A	.	.	LowGQX	END=151196769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151196770	.	G	.	.	LowGQX	.	GT	./.
chr1	151196771	.	A	.	.	LowGQX	END=151196779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151196780	.	T	.	.	LowGQX	.	GT	./.
chr1	151196781	.	T	.	.	LowGQX	END=151196787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151196788	.	A	.	.	LowGQX	.	GT	./.
chr1	151196815	.	G	.	.	LowGQX	.	GT	./.
chr1	151196816	.	T	.	.	LowGQX	END=151196854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151196855	.	A	.	.	LowGQX	END=151196914	GT	./.
chr1	151199787	.	T	.	.	LowGQX	END=151199886	GT	./.
chr1	151204145	.	A	.	.	LowGQX	END=151204197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151204198	.	G	.	.	LowGQX	END=151204279	GT	./.
chr1	151204722	.	A	.	.	PASS	END=151204745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:89:60
chr1	151204746	.	G	.	.	PASS	END=151204779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	151204780	.	A	.	.	PASS	END=151204843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	151205025	.	A	.	.	PASS	END=151205040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	151205041	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	151205042	.	G	.	.	PASS	END=151205048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	151205049	.	T	.	.	PASS	END=151205060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	151205061	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	151205062	.	T	.	.	PASS	END=151205063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	151205064	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	151205065	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	151205066	.	T	.	.	LowGQX	END=151205067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	151205068	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	151205069	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	151205070	.	G	.	.	PASS	END=151205071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	151205072	.	G	.	.	LowGQX	END=151205074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	151205075	.	A	.	.	PASS	END=151205076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	151205077	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	151205078	.	G	.	.	LowGQX	END=151205081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	151205082	.	C	.	.	PASS	END=151205083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	151205084	.	C	.	.	LowGQX	END=151205085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	151205086	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	151205087	.	T	.	.	LowGQX	END=151205095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	151205096	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	151205097	.	C	.	.	LowGQX	END=151205101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	151205102	.	G	.	.	LowGQX	END=151205106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	151205107	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	151205108	.	G	.	.	LowGQX	END=151205118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	151205119	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	151205120	.	A	.	.	LowGQX	END=151205125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	151205126	.	G	.	.	LowGQX	END=151205137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	151205138	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr1	151205139	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	151205140	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	151205141	.	G	.	.	LowGQX	END=151205156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	151205157	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	151205158	.	G	.	.	LowGQX	END=151205172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	151205173	.	C	.	.	LowGQX	END=151205175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151205176	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	151205177	.	A	.	.	LowGQX	END=151205179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	151205180	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	151205181	.	T	.	.	LowGQX	END=151205182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	151205183	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	151205184	.	G	.	.	LowGQX	END=151205189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	151205190	.	G	.	.	LowGQX	END=151205214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151206671	.	A	.	.	LowGQX	END=151206974	GT	./.
chr1	151209032	.	A	.	.	LowGQX	END=151209062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	151209063	.	C	T	52.84	LowGQ;LowGQX	DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=17.61;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:6.02:84,6,0:60:6:1.000
chr1	151209064	.	A	.	.	LowGQX	END=151209119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151209120	.	T	.	.	LowGQX	.	GT	./.
chr1	151209121	.	G	.	.	LowGQX	END=151209141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151209142	.	A	.	.	LowGQX	.	GT	./.
chr1	151209143	.	C	.	.	LowGQX	END=151209151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151209152	.	C	.	.	LowGQX	END=151209241	GT	./.
chr1	151210650	.	T	.	.	LowGQX	END=151210749	GT	./.
chr1	151211581	.	T	.	.	LowGQX	END=151211591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151211592	.	C	.	.	LowGQX	.	GT	./.
chr1	151211593	.	A	.	.	LowGQX	END=151211602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151211603	.	C	.	.	LowGQX	.	GT	./.
chr1	151211604	.	A	.	.	LowGQX	END=151211635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151211636	.	A	.	.	LowGQX	END=151211680	GT	./.
chr1	151212368	.	C	.	.	LowGQX	END=151212426	GT	./.
chr1	151212427	.	G	.	.	LowGQX	END=151212536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151212537	.	A	.	.	LowGQX	.	GT	./.
chr1	151212538	.	C	.	.	LowGQX	END=151212575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151212576	.	A	.	.	LowGQX	.	GT	./.
chr1	151212577	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151212578	.	C	.	.	LowGQX	.	GT	./.
chr1	151214597	.	A	.	.	LowGQX	END=151214747	GT	./.
chr1	151214912	.	A	.	.	LowGQX	END=151215045	GT	./.
chr1	151219369	.	C	.	.	LowGQX	END=151219468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151220331	.	C	.	.	LowGQX	END=151220430	GT	./.
chr1	151227162	.	A	.	.	LowGQX	END=151227321	GT	./.
chr1	151234635	.	A	.	.	LowGQX	END=151234770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151234771	.	T	.	.	LowGQX	END=151234779	GT	./.
chr1	151236388	.	A	.	.	LowGQX	END=151236437	GT	./.
chr1	151236438	.	G	.	.	LowGQX	END=151236506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151237302	.	T	.	.	LowGQX	END=151237401	GT	./.
chr1	151237627	.	T	.	.	LowGQX	END=151237726	GT	./.
chr1	151237868	.	A	.	.	LowGQX	END=151238087	GT	./.
chr1	151238478	.	A	.	.	LowGQX	END=151238629	GT	./.
chr1	151238782	.	A	.	.	LowGQX	END=151238871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151238872	.	A	.	.	LowGQX	END=151238917	GT	./.
chr1	151238980	.	G	.	.	LowGQX	END=151239079	GT	./.
chr1	151239386	.	C	.	.	LowGQX	END=151239485	GT	./.
chr1	151239647	.	A	.	.	LowGQX	END=151239651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239652	.	G	.	.	LowGQX	.	GT	./.
chr1	151239653	.	A	.	.	LowGQX	END=151239665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239666	.	C	.	.	LowGQX	.	GT	./.
chr1	151239667	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239668	.	T	.	.	LowGQX	.	GT	./.
chr1	151239669	.	G	.	.	LowGQX	END=151239680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239681	.	C	.	.	LowGQX	.	GT	./.
chr1	151239682	.	G	.	.	LowGQX	END=151239683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239684	.	G	.	.	LowGQX	END=151239685	GT	./.
chr1	151239686	.	T	.	.	LowGQX	END=151239688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239689	.	T	.	.	LowGQX	.	GT	./.
chr1	151239690	.	T	.	.	LowGQX	END=151239699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239700	.	C	.	.	LowGQX	.	GT	./.
chr1	151239701	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151239702	.	A	.	.	LowGQX	END=151239707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151239708	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151239709	.	C	.	.	LowGQX	END=151239716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151239717	.	T	.	.	LowGQX	.	GT	./.
chr1	151239718	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	151239719	.	T	.	.	LowGQX	END=151239724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151239725	.	C	.	.	LowGQX	.	GT	./.
chr1	151239726	.	C	.	.	LowGQX	END=151239733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151239734	.	A	.	.	LowGQX	.	GT	./.
chr1	151239735	.	A	.	.	LowGQX	END=151239736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151239737	.	C	.	.	LowGQX	END=151239738	GT	./.
chr1	151239739	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151239740	.	T	.	.	LowGQX	.	GT	./.
chr1	151239741	.	T	.	.	LowGQX	END=151239752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151239753	.	G	.	.	LowGQX	.	GT	./.
chr1	151239754	.	G	.	.	LowGQX	END=151239755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151239756	.	C	.	.	LowGQX	.	GT	./.
chr1	151239757	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151239758	.	C	.	.	LowGQX	.	GT	./.
chr1	151239759	.	C	.	.	LowGQX	END=151239761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239762	.	G	.	.	LowGQX	.	GT	./.
chr1	151239763	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239764	.	C	.	.	LowGQX	END=151239765	GT	./.
chr1	151239766	.	T	.	.	LowGQX	END=151239767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239768	.	C	.	.	LowGQX	.	GT	./.
chr1	151239769	.	C	.	.	LowGQX	END=151239772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239773	.	C	.	.	LowGQX	.	GT	./.
chr1	151239774	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239775	.	A	.	.	LowGQX	.	GT	./.
chr1	151239776	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239777	.	C	.	.	LowGQX	.	GT	./.
chr1	151239778	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239779	.	A	.	.	LowGQX	.	GT	./.
chr1	151239780	.	G	.	.	LowGQX	END=151239782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239783	.	C	.	.	LowGQX	.	GT	./.
chr1	151239784	.	G	.	.	LowGQX	END=151239785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239786	.	C	.	.	LowGQX	END=151239787	GT	./.
chr1	151239788	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239789	.	G	.	.	LowGQX	END=151239790	GT	./.
chr1	151239791	.	A	.	.	LowGQX	END=151239793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239794	.	A	.	.	LowGQX	.	GT	./.
chr1	151239795	.	C	.	.	LowGQX	END=151239797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239798	.	G	.	.	LowGQX	.	GT	./.
chr1	151239799	.	A	.	.	LowGQX	END=151239800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239801	.	G	.	.	LowGQX	.	GT	./.
chr1	151239802	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239803	.	A	.	.	LowGQX	END=151239804	GT	./.
chr1	151239805	.	G	.	.	LowGQX	END=151239811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239812	.	A	.	.	LowGQX	.	GT	./.
chr1	151239813	.	G	.	.	LowGQX	END=151239815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239816	.	G	.	.	LowGQX	.	GT	./.
chr1	151239817	.	T	.	.	LowGQX	END=151239818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151239819	.	A	.	.	LowGQX	.	GT	./.
chr1	151239820	.	G	.	.	LowGQX	END=151239821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151252653	.	A	.	.	LowGQX	END=151252752	GT	./.
chr1	151253967	.	C	.	.	LowGQX	END=151254135	GT	./.
chr1	151254501	.	G	.	.	LowGQX	END=151254522	GT	./.
chr1	151254523	.	G	.	.	LowGQX	END=151254526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151254527	.	A	.	.	LowGQX	.	GT	./.
chr1	151254528	.	C	.	.	LowGQX	END=151254532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151254533	.	C	.	.	LowGQX	.	GT	./.
chr1	151254534	.	C	.	.	LowGQX	END=151254556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151254557	.	T	.	.	LowGQX	.	GT	./.
chr1	151254558	.	A	.	.	LowGQX	END=151254561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151254562	.	T	.	.	LowGQX	.	GT	./.
chr1	151254563	.	C	.	.	LowGQX	END=151254600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151258751	.	G	.	.	LowGQX	END=151259168	GT	./.
chr1	151259169	.	C	.	.	LowGQX	END=151259237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151259238	.	A	.	.	LowGQX	.	GT	./.
chr1	151259239	.	A	.	.	LowGQX	END=151259272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151259273	.	A	.	.	LowGQX	.	GT	./.
chr1	151259274	.	G	.	.	LowGQX	END=151259277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151259278	.	G	.	.	LowGQX	.	GT	./.
chr1	151259279	.	G	.	.	LowGQX	END=151259281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151259282	.	A	.	.	LowGQX	END=151259283	GT	./.
chr1	151259284	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151259285	.	A	.	.	LowGQX	.	GT	./.
chr1	151259286	.	C	.	.	LowGQX	END=151259290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151259291	.	A	.	.	LowGQX	.	GT	./.
chr1	151259292	.	T	.	.	LowGQX	END=151259309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151259310	.	A	.	.	LowGQX	END=151259311	GT	./.
chr1	151259312	.	C	.	.	LowGQX	END=151259318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151259319	.	C	.	.	LowGQX	END=151259356	GT	./.
chr1	151259357	.	C	.	.	LowGQX	END=151259361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151259362	.	T	.	.	LowGQX	.	GT	./.
chr1	151259363	.	T	.	.	LowGQX	END=151259386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151259387	.	C	.	.	LowGQX	.	GT	./.
chr1	151259388	.	A	.	.	LowGQX	END=151259399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151259400	.	A	.	.	LowGQX	END=151259401	GT	./.
chr1	151259402	.	C	.	.	LowGQX	END=151259405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151259406	.	T	.	.	LowGQX	.	GT	./.
chr1	151259407	.	T	.	.	LowGQX	END=151259460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151259461	.	C	.	.	LowGQX	.	GT	./.
chr1	151259462	.	A	.	.	LowGQX	END=151259507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151259508	.	C	.	.	LowGQX	END=151259737	GT	./.
chr1	151259738	.	C	.	.	LowGQX	END=151259913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151259914	.	C	.	.	LowGQX	.	GT	./.
chr1	151259915	.	C	.	.	LowGQX	END=151259978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151259979	.	C	.	.	LowGQX	END=151260545	GT	./.
chr1	151260546	.	G	.	.	LowGQX	END=151260576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151260577	.	C	.	.	LowGQX	.	GT	./.
chr1	151260578	.	T	.	.	LowGQX	END=151260608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151260609	.	A	.	.	LowGQX	.	GT	./.
chr1	151260610	.	C	.	.	LowGQX	END=151260635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151260636	.	T	.	.	LowGQX	.	GT	./.
chr1	151260637	.	G	.	.	LowGQX	END=151260669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151260670	.	A	.	.	LowGQX	END=151260884	GT	./.
chr1	151261002	.	A	.	.	LowGQX	END=151261153	GT	./.
chr1	151261154	.	C	.	.	LowGQX	END=151261184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151261569	.	A	.	.	LowGQX	END=151261592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151261593	.	T	.	.	LowGQX	.	GT	./.
chr1	151261594	.	T	.	.	LowGQX	END=151261647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151261648	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	151261649	.	C	.	.	LowGQX	END=151261653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	151261654	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	151261655	.	G	.	.	LowGQX	END=151261656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	151261657	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	151261658	.	C	.	.	LowGQX	END=151261677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	151261678	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	151261679	.	C	.	.	LowGQX	END=151261682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	151261683	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	151261684	.	C	.	.	LowGQX	END=151261694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	151261695	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	151261696	.	C	.	.	LowGQX	END=151261719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	151261720	.	A	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr1	151261721	.	T	.	.	LowGQX	END=151261745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151261746	.	A	.	.	LowGQX	.	GT	./.
chr1	151261747	.	A	.	.	LowGQX	END=151261748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151261749	.	T	.	.	LowGQX	.	GT	./.
chr1	151261852	.	A	.	.	LowGQX	END=151262018	GT	./.
chr1	151262152	.	A	.	.	LowGQX	END=151262485	GT	./.
chr1	151262596	.	A	.	.	LowGQX	END=151262712	GT	./.
chr1	151262846	.	G	.	.	LowGQX	END=151263051	GT	./.
chr1	151263171	.	T	.	.	LowGQX	END=151263687	GT	./.
chr1	151265326	.	T	.	.	LowGQX	END=151265511	GT	./.
chr1	151265798	.	G	.	.	LowGQX	END=151265957	GT	./.
chr1	151266426	.	T	.	.	LowGQX	END=151266467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151266468	.	A	.	.	LowGQX	END=151266616	GT	./.
chr1	151266883	.	A	.	.	LowGQX	END=151267019	GT	./.
chr1	151271282	.	A	.	.	LowGQX	END=151271551	GT	./.
chr1	151274318	.	A	.	.	LowGQX	END=151274445	GT	./.
chr1	151274668	.	A	.	.	LowGQX	END=151274776	GT	./.
chr1	151276015	.	A	.	.	LowGQX	END=151276128	GT	./.
chr1	151278610	.	A	.	.	LowGQX	END=151278841	GT	./.
chr1	151280048	.	A	.	.	LowGQX	END=151280279	GT	./.
chr1	151282660	.	A	.	.	LowGQX	END=151282759	GT	./.
chr1	151288047	.	A	.	.	LowGQX	END=151288987	GT	./.
chr1	151298542	.	A	.	.	LowGQX	END=151298701	GT	./.
chr1	151314479	.	T	.	.	LowGQX	END=151314486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	151314487	.	A	.	.	LowGQX	END=151314488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	151314489	.	A	.	.	LowGQX	END=151314496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	151314497	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	151314498	.	G	.	.	LowGQX	END=151314503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	151314504	.	A	.	.	LowGQX	END=151314505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	151314506	.	C	.	.	LowGQX	END=151314513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	151314514	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr1	151314515	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	151314516	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	151314517	.	G	.	.	LowGQX	END=151314520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	151314521	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr1	151314522	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	151314523	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	151314524	.	G	.	.	LowGQX	END=151314526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	151314527	.	T	.	.	LowGQX	END=151314529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	151314530	.	C	.	.	LowGQX	END=151314532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	151314533	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	151314534	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	151314535	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	151314536	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	151314537	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	151314538	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr1	151314539	.	C	.	.	PASS	END=151314542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	151314543	.	A	.	.	PASS	END=151314557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	151314558	.	C	.	.	PASS	END=151314560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	151314561	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr1	151314562	.	C	.	.	PASS	END=151314563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	151314564	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:36:60
chr1	151314565	.	A	.	.	PASS	END=151314574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	151314575	.	T	.	.	PASS	END=151314577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	151314578	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	151314611	.	A	.	.	PASS	END=151314612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	151314613	.	T	.	.	PASS	END=151314614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	151314615	.	G	.	.	PASS	END=151314616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	151314617	.	C	.	.	PASS	END=151314621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	151314622	.	T	.	.	PASS	END=151314632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	151314633	.	A	.	.	PASS	END=151314638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	151314639	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:54:60
chr1	151314640	.	C	.	.	PASS	END=151314643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	151314644	.	C	.	.	PASS	END=151314648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	151314649	.	C	.	.	PASS	END=151314658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	151314659	.	G	.	.	PASS	END=151314707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	151314708	.	C	.	.	PASS	END=151314732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	151314733	.	C	.	.	PASS	END=151314744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	151314745	.	G	.	.	PASS	END=151314752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	151314753	.	G	.	.	PASS	END=151314765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	151314766	.	C	.	.	PASS	END=151314833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	151314834	.	A	.	.	PASS	END=151314902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr1	151314903	.	C	.	.	PASS	END=151314917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	151314918	.	T	.	.	PASS	END=151314945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	151314946	.	C	.	.	PASS	END=151315086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	151315087	.	T	.	.	PASS	END=151315161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	151315162	.	C	.	.	PASS	END=151315233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	151315234	.	C	.	.	PASS	END=151315252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	151315253	.	A	.	.	PASS	END=151315272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	151315273	.	T	.	.	PASS	END=151315320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	151315321	.	G	.	.	PASS	END=151315550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:276:99:60
chr1	151315551	.	T	.	.	PASS	END=151315646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr1	151315647	.	T	.	.	PASS	END=151315698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	151315699	.	A	.	.	PASS	END=151315705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	151315767	.	T	.	.	PASS	END=151315771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	151315772	.	A	.	.	PASS	END=151315861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	151315862	.	T	.	.	PASS	END=151315969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	151316106	.	G	.	.	PASS	END=151316133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	151316134	.	G	.	.	PASS	END=151316153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	151316154	.	C	.	.	PASS	END=151316160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	151316161	.	G	A	2536.37	PASS	DP=89;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=18.1371;MQ=60;MQ0=0;QD=28.50;SB=-1303.46	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,87:89:99:2569,196,0:60:99:1.000
chr1	151316162	.	A	.	.	PASS	END=151316197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	151316198	.	C	.	.	PASS	END=151316296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	151316297	.	G	.	.	PASS	END=151316336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	151316337	.	T	.	.	PASS	END=151316348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	151316349	.	C	.	.	PASS	END=151316380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	151316381	.	C	.	.	PASS	END=151316401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	151316402	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:63:60
chr1	151316403	.	A	.	.	PASS	END=151316409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	151316622	.	G	.	.	PASS	END=151316648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	151316649	.	A	.	.	PASS	END=151316682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:85:60
chr1	151316683	.	C	.	.	PASS	END=151316709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	151316710	.	G	.	.	PASS	END=151316805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	151316842	.	C	.	.	PASS	END=151316888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	151316889	.	A	.	.	PASS	END=151317007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	151317008	.	A	.	.	PASS	END=151317040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	151317041	.	A	.	.	PASS	END=151317063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	151317153	.	G	.	.	PASS	END=151317179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	151317180	.	C	.	.	PASS	END=151317202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	151317203	.	C	.	.	PASS	END=151317220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	151317221	.	A	.	.	PASS	END=151317247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	151317248	.	G	.	.	PASS	END=151317281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	151317282	.	G	.	.	PASS	END=151317374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	151317531	.	C	.	.	PASS	END=151317575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	151317576	.	A	.	.	PASS	END=151317676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	151317677	.	A	.	.	PASS	END=151317711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	151317712	.	G	.	.	PASS	END=151317715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	151318353	.	C	.	.	PASS	END=151318490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	151318630	.	G	.	.	PASS	END=151318744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	151318745	.	G	.	.	PASS	END=151318775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	151318776	.	A	.	.	PASS	END=151318788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	151318789	.	T	.	.	PASS	END=151318809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	151318810	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:57:60
chr1	151318811	.	T	.	.	PASS	END=151318821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	151318822	.	G	.	.	PASS	END=151318836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	151318837	.	A	.	.	PASS	END=151318845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	151318846	.	A	.	.	PASS	END=151318847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	151336978	.	T	.	.	LowGQX	END=151337183	GT	./.
chr1	151337400	.	A	.	.	LowGQX	END=151337522	GT	./.
chr1	151337662	.	T	.	.	LowGQX	END=151337711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	151337712	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	151337713	.	C	.	.	LowGQX	END=151337756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151337757	.	G	.	.	LowGQX	.	GT	./.
chr1	151337758	.	C	.	.	LowGQX	END=151337759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151337760	.	A	.	.	LowGQX	END=151337761	GT	./.
chr1	151338037	.	A	.	.	LowGQX	END=151338121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151338122	.	A	.	.	LowGQX	.	GT	./.
chr1	151338123	.	G	.	.	LowGQX	END=151338145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151338146	.	T	.	.	LowGQX	.	GT	./.
chr1	151338147	.	G	.	.	LowGQX	END=151338151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151338152	.	T	.	.	LowGQX	.	GT	./.
chr1	151338153	.	G	.	.	LowGQX	END=151338154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151338155	.	T	.	.	LowGQX	.	GT	./.
chr1	151338156	.	C	.	.	LowGQX	END=151338162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151338234	.	A	.	.	LowGQX	END=151338333	GT	./.
chr1	151338749	.	A	.	.	LowGQX	END=151338905	GT	./.
chr1	151338906	.	C	.	.	LowGQX	END=151338931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151339196	.	A	.	.	LowGQX	END=151339210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151339211	.	A	.	.	LowGQX	END=151339382	GT	./.
chr1	151340673	.	A	.	.	LowGQX	END=151340797	GT	./.
chr1	151341476	.	A	.	.	LowGQX	END=151341490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151341491	.	T	.	.	LowGQX	END=151341492	GT	./.
chr1	151341493	.	G	.	.	LowGQX	END=151341504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151341505	.	T	.	.	LowGQX	.	GT	./.
chr1	151341506	.	C	.	.	LowGQX	END=151341667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151341916	.	A	.	.	LowGQX	END=151341936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151341937	.	T	.	.	LowGQX	.	GT	./.
chr1	151341938	.	T	.	.	LowGQX	END=151341981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151341982	.	C	.	.	LowGQX	.	GT	./.
chr1	151341983	.	C	.	.	LowGQX	END=151342014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151342015	.	A	.	.	LowGQX	END=151342032	GT	./.
chr1	151342187	.	A	.	.	LowGQX	END=151342215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151342216	.	A	.	.	LowGQX	END=151342375	GT	./.
chr1	151345066	.	A	.	.	LowGQX	END=151345165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151372062	.	A	.	.	LowGQX	END=151372241	GT	./.
chr1	151372455	.	A	.	.	LowGQX	END=151372537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151372538	.	C	.	.	LowGQX	END=151372665	GT	./.
chr1	151372916	.	A	.	.	LowGQX	END=151373074	GT	./.
chr1	151373231	.	T	.	.	LowGQX	END=151373330	GT	./.
chr1	151373713	.	A	.	.	LowGQX	END=151373754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151373755	.	G	.	.	LowGQX	.	GT	./.
chr1	151373756	.	C	.	.	LowGQX	END=151373759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151373760	.	A	.	.	LowGQX	.	GT	./.
chr1	151373761	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151373762	.	C	.	.	LowGQX	.	GT	./.
chr1	151373763	.	G	.	.	LowGQX	END=151373833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151374013	.	T	.	.	LowGQX	END=151374112	GT	./.
chr1	151374250	.	C	.	.	LowGQX	END=151374349	GT	./.
chr1	151377276	.	A	.	.	PASS	END=151377292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:59
chr1	151377293	.	A	.	.	PASS	END=151377321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:59
chr1	151377322	.	A	.	.	PASS	END=151377332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	151377333	.	T	.	.	PASS	END=151377334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	151377335	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:47:60
chr1	151377336	.	C	.	.	PASS	END=151377340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	151377341	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:69:60
chr1	151377342	.	C	.	.	PASS	END=151377354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	151377355	.	G	.	.	PASS	END=151377358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	151377359	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:68:60
chr1	151377360	.	A	.	.	PASS	END=151377395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	151377396	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:64:60
chr1	151377397	.	T	.	.	PASS	END=151377401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	151377402	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:41:9:60
chr1	151377403	.	G	.	.	PASS	END=151377558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	151377559	.	G	.	.	PASS	END=151377609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	151377610	.	C	.	.	PASS	END=151377709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	151377710	.	G	.	.	PASS	END=151377744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	151377745	.	C	.	.	PASS	END=151377874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:94:60
chr1	151377875	.	C	.	.	PASS	END=151377938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:94:60
chr1	151377939	.	A	.	.	PASS	END=151378010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	151378011	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:57:60
chr1	151378012	.	C	.	.	PASS	END=151378017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	151378018	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:54:60
chr1	151378019	.	C	.	.	PASS	END=151378039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	151378040	.	A	.	.	PASS	END=151378056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	151378057	.	T	.	.	PASS	END=151378091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	151378092	.	T	.	.	PASS	END=151378093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	151378094	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:63:60
chr1	151378095	.	C	.	.	PASS	END=151378103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	151378104	.	A	.	.	PASS	END=151378106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	151378107	.	T	.	.	PASS	END=151378118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	151378119	.	A	.	.	PASS	END=151378128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	151378129	.	T	.	.	PASS	END=151378141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	151378142	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:30:60
chr1	151378143	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:72:60
chr1	151378144	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:36:60
chr1	151378145	.	A	.	.	PASS	END=151378147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	151378148	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:48:60
chr1	151378149	.	A	.	.	PASS	END=151378153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	151378154	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:44:60
chr1	151378155	.	A	.	.	PASS	END=151378180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	151378181	.	C	.	.	PASS	END=151378206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	151378207	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:33:60
chr1	151378208	.	T	.	.	PASS	END=151378230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	151378231	.	G	.	.	PASS	END=151378276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	151378277	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:60
chr1	151378278	.	C	.	.	PASS	END=151378299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:92:60
chr1	151378300	.	A	.	.	PASS	END=151378398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	151378399	.	G	.	.	PASS	END=151378536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	151378537	.	C	.	.	PASS	END=151378549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	151378550	.	G	.	.	PASS	END=151378561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	151378562	.	A	.	.	PASS	END=151378575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	151378576	.	G	.	.	PASS	END=151378614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:77:60
chr1	151378615	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:60:60
chr1	151378616	.	A	.	.	PASS	END=151378643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	151378644	.	T	.	.	PASS	END=151378663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	151378664	.	G	.	.	PASS	END=151378674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	151378675	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:56:60
chr1	151378676	.	C	.	.	PASS	END=151378680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	151378681	.	C	.	.	PASS	END=151378695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	151378696	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:18:60
chr1	151378697	.	T	.	.	PASS	END=151378702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	151378703	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:39:60
chr1	151378704	.	C	.	.	PASS	END=151378707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	151378708	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:21:60
chr1	151378709	.	T	.	.	PASS	END=151378712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	151378713	.	G	.	.	PASS	END=151378715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	151378716	.	A	.	.	PASS	END=151378720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	151378721	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	151378722	.	G	.	.	PASS	END=151378726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	151378727	.	G	.	.	PASS	END=151378732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	151378733	.	A	.	.	PASS	END=151378736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	151378737	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	151378738	.	G	.	.	PASS	END=151378742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	151378743	.	T	.	.	PASS	END=151378749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	151378750	.	G	.	.	PASS	END=151378752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	151378753	.	T	.	.	PASS	END=151378755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	151378756	.	G	.	.	PASS	END=151378780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	151378781	.	T	.	.	PASS	END=151378795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	151378796	.	G	.	.	PASS	END=151378797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	151378798	.	C	.	.	PASS	END=151378803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	151378804	.	G	.	.	PASS	END=151378817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	151378818	.	T	.	.	PASS	END=151378824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	151378825	.	C	.	.	PASS	END=151378848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	151378849	.	T	.	.	PASS	END=151378853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	151378854	.	G	.	.	PASS	END=151378873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	151378874	.	G	.	.	PASS	END=151378891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	151378892	.	C	.	.	PASS	END=151378899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	151378900	.	T	.	.	PASS	END=151378903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	151378904	.	G	.	.	PASS	END=151378927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr1	151378928	.	A	.	.	PASS	END=151378942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	151379046	.	A	.	.	PASS	END=151379145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	151379385	.	A	.	.	PASS	END=151379420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	151379421	.	G	.	.	PASS	END=151379477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	151379478	.	A	.	.	PASS	END=151379501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	151379690	.	T	.	.	PASS	END=151379783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	151379784	.	A	.	.	PASS	END=151379789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	151380574	.	A	.	.	PASS	END=151380611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	151380612	.	G	.	.	PASS	END=151380634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	151380635	.	G	.	.	PASS	END=151380718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	151380863	.	G	.	.	PASS	END=151380880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	151380881	.	T	.	.	PASS	END=151380913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	151380914	.	G	.	.	PASS	END=151381042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	151381043	.	A	.	.	PASS	END=151381092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	151381168	.	A	.	.	PASS	END=151381305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	151381306	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:82:99:60
chr1	151384099	.	A	.	.	PASS	END=151384150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:96:60
chr1	151384151	.	T	.	.	PASS	END=151384193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	151384194	.	C	.	.	PASS	END=151384231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:59
chr1	151384232	.	A	.	.	PASS	END=151384253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:59
chr1	151384254	.	C	.	.	PASS	END=151384260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:59
chr1	151384261	.	G	.	.	PASS	END=151384274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:59
chr1	151384770	.	A	.	.	PASS	END=151384791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	151384792	.	C	.	.	PASS	END=151384847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	151384848	.	G	.	.	PASS	END=151384874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	151395841	.	T	.	.	PASS	END=151395866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	151395867	.	A	.	.	PASS	END=151395891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	151395892	.	A	.	.	PASS	END=151395984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	151395985	.	C	.	.	PASS	END=151396026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	151396027	.	T	.	.	PASS	END=151396029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	151396423	.	A	.	.	PASS	END=151396487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	151396488	.	A	.	.	PASS	END=151396598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	151396599	.	A	.	.	PASS	END=151396626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	151396627	.	T	.	.	PASS	END=151396640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	151396641	.	G	.	.	PASS	END=151396650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	151396651	.	C	.	.	PASS	END=151396674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	151396675	.	A	.	.	PASS	END=151396703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	151396704	.	G	.	.	PASS	END=151396705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	151396706	.	T	.	.	PASS	END=151396707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr1	151396708	.	C	.	.	PASS	END=151396746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	151396747	.	T	.	.	PASS	END=151396764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	151397429	.	A	.	.	PASS	END=151397481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	151397482	.	T	.	.	PASS	END=151397536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	151397537	.	A	.	.	PASS	END=151397539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	151400285	.	T	.	.	PASS	END=151400322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	151400323	.	T	.	.	PASS	END=151400351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	151400352	.	T	.	.	PASS	END=151400394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	151400395	.	G	.	.	PASS	END=151400504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	151400505	.	G	.	.	PASS	END=151400519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	151400597	.	A	.	.	PASS	END=151400666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	151400667	.	G	.	.	PASS	END=151400707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	151400708	.	C	.	.	PASS	END=151400734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	151400735	.	G	.	.	PASS	END=151400772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	151400773	.	T	.	.	PASS	END=151400804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	151400805	.	A	.	.	PASS	END=151400891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	151402077	.	A	.	.	PASS	END=151402112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	151402113	.	T	.	.	PASS	END=151402121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	151402122	.	G	.	.	PASS	END=151402181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:84:60
chr1	151402182	.	A	.	.	PASS	END=151402189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	151403120	.	T	.	.	PASS	END=151403133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	151403134	.	C	.	.	PASS	END=151403152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	151403153	.	T	.	.	PASS	END=151403284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	151403285	.	G	.	.	PASS	END=151403333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	151403334	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:161:60:60
chr1	151403335	.	A	.	.	PASS	END=151403369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	151413402	.	A	.	.	PASS	END=151413436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	151413437	.	T	.	.	PASS	END=151413533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	151413534	.	A	.	.	PASS	END=151413564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	151414555	.	A	.	.	PASS	END=151414599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	151414600	.	G	.	.	PASS	END=151414682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	151490994	.	T	.	.	LowGQX	END=151491311	GT	./.
chr1	151491312	.	C	.	.	LowGQX	END=151491349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491350	.	A	.	.	LowGQX	.	GT	./.
chr1	151491351	.	C	.	.	LowGQX	END=151491353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491354	.	C	.	.	LowGQX	.	GT	./.
chr1	151491355	.	T	.	.	LowGQX	END=151491371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491372	.	C	.	.	LowGQX	.	GT	./.
chr1	151491373	.	C	.	.	LowGQX	END=151491375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491376	.	C	.	.	LowGQX	END=151491377	GT	./.
chr1	151491378	.	G	.	.	LowGQX	END=151491384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491385	.	A	.	.	LowGQX	.	GT	./.
chr1	151491386	.	A	.	.	LowGQX	END=151491405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491406	.	C	.	.	LowGQX	.	GT	./.
chr1	151491407	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491408	.	A	.	.	LowGQX	.	GT	./.
chr1	151491409	.	G	.	.	LowGQX	END=151491411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491412	.	C	.	.	LowGQX	.	GT	./.
chr1	151491413	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491414	.	C	.	.	LowGQX	END=151491415	GT	./.
chr1	151491416	.	C	.	.	LowGQX	END=151491418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491419	.	G	.	.	LowGQX	.	GT	./.
chr1	151491420	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491421	.	A	.	.	LowGQX	.	GT	./.
chr1	151491422	.	G	.	.	LowGQX	END=151491424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491425	.	C	.	.	LowGQX	.	GT	./.
chr1	151491426	.	C	.	.	LowGQX	END=151491433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491434	.	G	.	.	LowGQX	END=151491435	GT	./.
chr1	151491436	.	G	.	.	LowGQX	END=151491437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491438	.	A	.	.	LowGQX	.	GT	./.
chr1	151491439	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491440	.	C	.	.	LowGQX	.	GT	./.
chr1	151491441	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491442	.	T	.	.	LowGQX	.	GT	./.
chr1	151491443	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491444	.	G	.	.	LowGQX	END=151491445	GT	./.
chr1	151491446	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491447	.	A	.	.	LowGQX	.	GT	./.
chr1	151491448	.	C	.	.	LowGQX	END=151491454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491455	.	A	.	.	LowGQX	END=151491456	GT	./.
chr1	151491457	.	C	.	.	LowGQX	END=151491459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491460	.	C	.	.	LowGQX	.	GT	./.
chr1	151491461	.	A	.	.	LowGQX	END=151491462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491463	.	G	.	.	LowGQX	END=151491487	GT	./.
chr1	151491488	.	T	.	.	LowGQX	END=151491594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491595	.	A	.	.	LowGQX	.	GT	./.
chr1	151491596	.	A	.	.	LowGQX	END=151491614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491615	.	A	.	.	LowGQX	.	GT	./.
chr1	151491616	.	A	.	.	LowGQX	END=151491726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491727	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151491728	.	G	.	.	LowGQX	END=151491736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151491737	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151491738	.	C	.	.	LowGQX	END=151491758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491759	.	A	.	.	LowGQX	.	GT	./.
chr1	151491760	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491761	.	A	.	.	LowGQX	END=151491762	GT	./.
chr1	151491763	.	C	.	.	LowGQX	END=151491765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491766	.	G	.	.	LowGQX	.	GT	./.
chr1	151491767	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491768	.	G	.	.	LowGQX	.	GT	./.
chr1	151491769	.	T	.	.	LowGQX	END=151491780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491781	.	C	.	.	LowGQX	.	GT	./.
chr1	151491782	.	T	.	.	LowGQX	END=151491783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491784	.	T	.	.	LowGQX	END=151491785	GT	./.
chr1	151491786	.	G	.	.	LowGQX	END=151491787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491788	.	C	.	.	LowGQX	END=151491789	GT	./.
chr1	151491790	.	T	.	.	LowGQX	END=151491795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491796	.	T	.	.	LowGQX	.	GT	./.
chr1	151491797	.	C	.	.	LowGQX	END=151491798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491799	.	G	.	.	LowGQX	.	GT	./.
chr1	151491800	.	A	.	.	LowGQX	END=151491801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491802	.	T	.	.	LowGQX	.	GT	./.
chr1	151491803	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491804	.	A	.	.	LowGQX	END=151491805	GT	./.
chr1	151491806	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491807	.	A	.	.	LowGQX	.	GT	./.
chr1	151491808	.	C	.	.	LowGQX	END=151491809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491810	.	G	.	.	LowGQX	.	GT	./.
chr1	151491811	.	G	.	.	LowGQX	END=151491815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491816	.	T	.	.	LowGQX	.	GT	./.
chr1	151491817	.	T	.	.	LowGQX	END=151491819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491820	.	G	.	.	LowGQX	.	GT	./.
chr1	151491821	.	A	.	.	LowGQX	END=151491822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491823	.	T	.	.	LowGQX	.	GT	./.
chr1	151491824	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491825	.	T	.	.	LowGQX	END=151491826	GT	./.
chr1	151491827	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491828	.	A	.	.	LowGQX	.	GT	./.
chr1	151491829	.	G	.	.	LowGQX	END=151491831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491832	.	G	.	.	LowGQX	.	GT	./.
chr1	151491833	.	C	.	.	LowGQX	END=151491840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491841	.	G	.	.	LowGQX	.	GT	./.
chr1	151491842	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491843	.	G	.	.	LowGQX	.	GT	./.
chr1	151491844	.	T	.	.	LowGQX	END=151491849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491850	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	151491851	.	G	.	.	LowGQX	END=151491863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491864	.	T	.	.	LowGQX	.	GT	./.
chr1	151491865	.	G	.	.	LowGQX	END=151491867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491868	.	G	.	.	LowGQX	.	GT	./.
chr1	151491869	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151491870	.	T	.	.	LowGQX	.	GT	./.
chr1	151492640	.	A	.	.	LowGQX	END=151492744	GT	./.
chr1	151492875	.	C	.	.	LowGQX	END=151492974	GT	./.
chr1	151493070	.	A	.	.	LowGQX	END=151493169	GT	./.
chr1	151495908	.	A	.	.	LowGQX	END=151495919	GT	./.
chr1	151495920	.	A	.	.	LowGQX	END=151496039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151496700	.	A	.	.	LowGQX	END=151496836	GT	./.
chr1	151497078	.	T	.	.	LowGQX	END=151497151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151497152	.	C	.	.	LowGQX	.	GT	./.
chr1	151497153	.	C	.	.	LowGQX	END=151497196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151497197	.	A	.	.	LowGQX	.	GT	./.
chr1	151497198	.	C	.	.	LowGQX	END=151497205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151497206	.	A	.	.	LowGQX	END=151497213	GT	./.
chr1	151497214	.	A	.	.	LowGQX	END=151497282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151497283	.	A	.	.	LowGQX	END=151497293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	151497294	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	151497295	.	A	.	.	LowGQX	END=151497321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	151497322	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	151497323	.	C	.	.	LowGQX	END=151497365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	151497366	.	T	.	.	LowGQX	END=151497408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151497409	.	A	.	.	LowGQX	.	GT	./.
chr1	151497410	.	C	.	.	LowGQX	END=151497412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151497413	.	G	.	.	LowGQX	END=151497414	GT	./.
chr1	151497415	.	C	.	.	LowGQX	END=151497417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151497418	.	C	.	.	LowGQX	.	GT	./.
chr1	151497419	.	C	.	.	LowGQX	END=151497427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151498116	.	A	.	.	LowGQX	END=151498268	GT	./.
chr1	151499449	.	A	.	.	LowGQX	END=151499585	GT	./.
chr1	151501824	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501825	.	G	.	.	LowGQX	.	GT	./.
chr1	151501826	.	G	.	.	LowGQX	END=151501827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501828	.	G	.	.	LowGQX	.	GT	./.
chr1	151501829	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501830	.	T	.	.	LowGQX	END=151501831	GT	./.
chr1	151501832	.	C	.	.	LowGQX	END=151501833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501834	.	C	.	.	LowGQX	.	GT	./.
chr1	151501835	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501836	.	G	.	.	LowGQX	.	GT	./.
chr1	151501837	.	G	.	.	LowGQX	END=151501839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501840	.	A	.	.	LowGQX	.	GT	./.
chr1	151501841	.	C	.	.	LowGQX	END=151501842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501843	.	G	.	.	LowGQX	END=151501844	GT	./.
chr1	151501845	.	A	.	.	LowGQX	END=151501849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501850	.	C	.	.	LowGQX	.	GT	./.
chr1	151501851	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501852	.	T	.	.	LowGQX	.	GT	./.
chr1	151501853	.	A	.	.	LowGQX	END=151501854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501855	.	G	.	.	LowGQX	END=151501856	GT	./.
chr1	151501857	.	A	.	.	LowGQX	END=151501861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501862	.	C	.	.	LowGQX	.	GT	./.
chr1	151501863	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501864	.	G	.	.	LowGQX	END=151501865	GT	./.
chr1	151501866	.	C	.	.	LowGQX	END=151501872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501873	.	G	.	.	LowGQX	.	GT	./.
chr1	151501874	.	C	.	.	LowGQX	END=151501876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501877	.	A	.	.	LowGQX	.	GT	./.
chr1	151501878	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501879	.	C	.	.	LowGQX	.	GT	./.
chr1	151501880	.	C	.	.	LowGQX	END=151501882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501883	.	G	.	.	LowGQX	.	GT	./.
chr1	151501884	.	A	.	.	LowGQX	END=151501885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501886	.	G	.	.	LowGQX	END=151501887	GT	./.
chr1	151501888	.	G	.	.	LowGQX	END=151501893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501894	.	G	.	.	LowGQX	END=151501929	GT	./.
chr1	151501930	.	G	.	.	LowGQX	END=151501931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501932	.	T	.	.	LowGQX	END=151501933	GT	./.
chr1	151501934	.	C	.	.	LowGQX	END=151501937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501938	.	G	.	.	LowGQX	END=151501939	GT	./.
chr1	151501940	.	G	.	.	LowGQX	END=151501941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501942	.	C	.	.	LowGQX	END=151501943	GT	./.
chr1	151501944	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501945	.	G	.	.	LowGQX	.	GT	./.
chr1	151501946	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501947	.	C	.	.	LowGQX	.	GT	./.
chr1	151501948	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501949	.	G	.	.	LowGQX	.	GT	./.
chr1	151501950	.	A	.	.	LowGQX	END=151501954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501955	.	G	.	.	LowGQX	.	GT	./.
chr1	151501956	.	G	.	.	LowGQX	END=151501962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501963	.	G	.	.	LowGQX	.	GT	./.
chr1	151501964	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501965	.	T	.	.	LowGQX	END=151501966	GT	./.
chr1	151501967	.	G	.	.	LowGQX	END=151501985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151501986	.	T	.	.	LowGQX	.	GT	./.
chr1	151501987	.	A	.	.	LowGQX	END=151501999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151502000	.	C	.	.	LowGQX	.	GT	./.
chr1	151502001	.	A	.	.	LowGQX	END=151502007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151502008	.	G	.	.	LowGQX	.	GT	./.
chr1	151502009	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151502010	.	G	.	.	LowGQX	.	GT	./.
chr1	151502011	.	A	.	.	LowGQX	END=151502014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151502015	.	G	.	.	LowGQX	.	GT	./.
chr1	151502016	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151502017	.	C	.	.	LowGQX	.	GT	./.
chr1	151502018	.	T	.	.	LowGQX	END=151502019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151502020	.	T	.	.	LowGQX	END=151502021	GT	./.
chr1	151502022	.	A	.	.	LowGQX	END=151502031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151502032	.	C	.	.	LowGQX	.	GT	./.
chr1	151502033	.	A	.	.	LowGQX	END=151502034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151502035	.	G	.	.	LowGQX	.	GT	./.
chr1	151502036	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151502037	.	C	.	.	LowGQX	.	GT	./.
chr1	151502383	.	A	.	.	LowGQX	END=151502561	GT	./.
chr1	151502562	.	C	.	.	LowGQX	END=151502593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151502952	.	C	.	.	LowGQX	END=151503019	GT	./.
chr1	151503020	.	G	.	.	LowGQX	END=151503094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151503095	.	A	.	.	LowGQX	.	GT	./.
chr1	151503096	.	G	.	.	LowGQX	END=151503102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151503103	.	A	.	.	LowGQX	.	GT	./.
chr1	151503104	.	C	.	.	LowGQX	END=151503128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151503129	.	A	.	.	LowGQX	.	GT	./.
chr1	151503130	.	G	.	.	LowGQX	END=151503133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151503134	.	A	.	.	LowGQX	.	GT	./.
chr1	151503135	.	G	.	.	LowGQX	END=151503169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151503170	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151503171	.	G	.	.	LowGQX	END=151503181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151503182	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	151503183	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	151503184	.	C	.	.	LowGQX	.	GT	./.
chr1	151503185	.	G	.	.	LowGQX	END=151503190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	151503191	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	151503192	.	G	.	.	LowGQX	END=151503195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	151503196	.	A	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr1	151503197	.	G	.	.	LowGQX	END=151503198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	151503199	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	151503200	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	151503201	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:3.01:60:3
chr1	151503202	.	G	.	.	LowGQX	END=151503205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	151503206	.	A	.	.	LowGQX	.	GT	./.
chr1	151503207	.	C	.	.	LowGQX	END=151503214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	151503215	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	151503216	.	C	.	.	LowGQX	END=151503217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	151503218	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	151503219	.	G	.	.	LowGQX	END=151503223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	151503224	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	151503225	.	G	.	.	LowGQX	END=151503230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	151503231	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	151504876	.	A	.	.	LowGQX	END=151505050	GT	./.
chr1	151506449	.	A	.	.	LowGQX	END=151506638	GT	./.
chr1	151507513	.	C	.	.	LowGQX	END=151507612	GT	./.
chr1	151508068	.	C	.	.	LowGQX	END=151508093	GT	./.
chr1	151508094	.	G	.	.	LowGQX	END=151508162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151508163	.	A	.	.	LowGQX	.	GT	./.
chr1	151508164	.	T	.	.	LowGQX	END=151508167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151508254	.	A	.	.	LowGQX	END=151508276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151508277	.	T	.	.	LowGQX	.	GT	./.
chr1	151508278	.	T	.	.	LowGQX	END=151508286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151508287	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	151508288	.	A	.	.	LowGQX	END=151508290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151508291	.	A	.	.	LowGQX	.	GT	./.
chr1	151508292	.	G	.	.	LowGQX	END=151508316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151508317	.	T	.	.	LowGQX	.	GT	./.
chr1	151508318	.	C	.	.	LowGQX	END=151508337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151508338	.	A	.	.	LowGQX	.	GT	./.
chr1	151508339	.	T	.	.	LowGQX	END=151508376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151508711	.	A	.	.	LowGQX	END=151508823	GT	./.
chr1	151509204	.	A	.	.	LowGQX	END=151509239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151509240	.	T	.	.	LowGQX	.	GT	./.
chr1	151509241	.	G	.	.	LowGQX	END=151509282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151509283	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	151509284	.	A	.	.	LowGQX	END=151509371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151509679	.	A	.	.	LowGQX	END=151509824	GT	./.
chr1	151512823	.	T	.	.	LowGQX	END=151512922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151518270	.	A	.	.	LowGQX	END=151518305	GT	./.
chr1	151518306	.	G	.	.	LowGQX	END=151518309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151518310	.	T	.	.	LowGQX	.	GT	./.
chr1	151518311	.	G	.	.	LowGQX	END=151518337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151518338	.	T	.	.	LowGQX	.	GT	./.
chr1	151518339	.	C	.	.	LowGQX	END=151518349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151518350	.	A	.	.	LowGQX	.	GT	./.
chr1	151518351	.	T	.	.	LowGQX	END=151518352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151518353	.	T	.	.	LowGQX	.	GT	./.
chr1	151518354	.	C	.	.	LowGQX	END=151518362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151518363	.	C	.	.	LowGQX	END=151518365	GT	./.
chr1	151518366	.	C	.	.	LowGQX	END=151518369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151534215	.	G	.	.	LowGQX	END=151534332	GT	./.
chr1	151534555	.	T	.	.	LowGQX	END=151534654	GT	./.
chr1	151535059	.	A	.	.	LowGQX	END=151535164	GT	./.
chr1	151536314	.	A	.	.	LowGQX	END=151536339	GT	./.
chr1	151536340	.	T	.	.	LowGQX	END=151536349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151536350	.	T	.	.	LowGQX	.	GT	./.
chr1	151536351	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151536352	.	T	.	.	LowGQX	.	GT	./.
chr1	151536353	.	C	.	.	LowGQX	END=151536354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151536355	.	T	.	.	LowGQX	.	GT	./.
chr1	151536356	.	A	.	.	LowGQX	END=151536372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151536373	.	A	.	.	LowGQX	.	GT	./.
chr1	151536374	.	T	.	.	LowGQX	END=151536473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151536996	.	C	.	.	LowGQX	END=151537095	GT	./.
chr1	151538622	.	T	.	.	LowGQX	END=151538639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151538640	.	T	.	.	LowGQX	.	GT	./.
chr1	151538641	.	G	.	.	LowGQX	END=151538642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151538643	.	T	.	.	LowGQX	.	GT	./.
chr1	151538644	.	G	.	.	LowGQX	END=151538673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151538674	.	T	.	.	LowGQX	.	GT	./.
chr1	151538675	.	C	.	.	LowGQX	END=151538701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151538702	.	G	T	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	151538703	.	A	.	.	LowGQX	END=151538721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151542131	.	A	.	.	LowGQX	END=151542213	GT	./.
chr1	151542214	.	C	.	.	LowGQX	END=151542222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151542223	.	C	.	.	LowGQX	.	GT	./.
chr1	151542224	.	A	.	.	LowGQX	END=151542225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151542226	.	T	.	.	LowGQX	.	GT	./.
chr1	151542227	.	C	.	.	LowGQX	END=151542229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151542230	.	A	.	.	LowGQX	.	GT	./.
chr1	151542231	.	C	.	.	LowGQX	END=151542239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151542240	.	T	.	.	LowGQX	.	GT	./.
chr1	151542241	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151542242	.	T	.	.	LowGQX	.	GT	./.
chr1	151542243	.	T	.	.	LowGQX	END=151542245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151542246	.	G	.	.	LowGQX	.	GT	./.
chr1	151542247	.	G	.	.	LowGQX	END=151542248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151546744	.	A	.	.	LowGQX	END=151546876	GT	./.
chr1	151547385	.	A	.	.	LowGQX	END=151547484	GT	./.
chr1	151551195	.	A	.	.	LowGQX	END=151551304	GT	./.
chr1	151552117	.	C	.	.	LowGQX	END=151552216	GT	./.
chr1	151553416	.	A	.	.	LowGQX	END=151553520	GT	./.
chr1	151554102	.	T	.	.	LowGQX	END=151554105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151554106	.	A	.	.	LowGQX	.	GT	./.
chr1	151554107	.	A	.	.	LowGQX	END=151554133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151554134	.	A	.	.	LowGQX	.	GT	./.
chr1	151554135	.	G	.	.	LowGQX	END=151554137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151554138	.	G	.	.	LowGQX	.	GT	./.
chr1	151554139	.	C	.	.	LowGQX	END=151554155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151554156	.	G	.	.	LowGQX	.	GT	./.
chr1	151554157	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151554158	.	C	.	.	LowGQX	.	GT	./.
chr1	151554159	.	T	.	.	LowGQX	END=151554177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151554178	.	A	.	.	LowGQX	.	GT	./.
chr1	151554179	.	C	.	.	LowGQX	END=151554186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151554187	.	G	.	.	LowGQX	.	GT	./.
chr1	151554188	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151554189	.	C	.	.	LowGQX	END=151554190	GT	./.
chr1	151554191	.	G	.	.	LowGQX	END=151554201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151554555	.	G	.	.	LowGQX	END=151554556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151554557	.	C	.	.	LowGQX	.	GT	./.
chr1	151554558	.	C	.	.	LowGQX	END=151554668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151554669	.	T	.	.	LowGQX	END=151554716	GT	./.
chr1	151584665	.	G	.	.	LowGQX	END=151584676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584677	.	G	.	.	LowGQX	.	GT	./.
chr1	151584678	.	A	.	.	LowGQX	END=151584695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584696	.	G	.	.	LowGQX	.	GT	./.
chr1	151584697	.	A	.	.	LowGQX	END=151584702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584703	.	T	.	.	LowGQX	.	GT	./.
chr1	151584704	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584705	.	C	.	.	LowGQX	.	GT	./.
chr1	151584706	.	A	.	.	LowGQX	END=151584722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584723	.	A	.	.	LowGQX	.	GT	./.
chr1	151584724	.	G	.	.	LowGQX	END=151584725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584726	.	A	.	.	LowGQX	END=151584727	GT	./.
chr1	151584728	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584729	.	G	.	.	LowGQX	.	GT	./.
chr1	151584730	.	G	.	.	LowGQX	END=151584745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584746	.	C	.	.	LowGQX	END=151584747	GT	./.
chr1	151584748	.	G	.	.	LowGQX	END=151584752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584753	.	T	.	.	LowGQX	.	GT	./.
chr1	151584754	.	C	.	.	LowGQX	END=151584762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584763	.	A	.	.	LowGQX	.	GT	./.
chr1	151584764	.	C	.	.	LowGQX	END=151584771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584772	.	G	.	.	LowGQX	.	GT	./.
chr1	151584773	.	G	.	.	LowGQX	END=151584774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584775	.	A	.	.	LowGQX	.	GT	./.
chr1	151584776	.	C	.	.	LowGQX	END=151584781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584782	.	C	.	.	LowGQX	END=151584822	GT	./.
chr1	151584823	.	C	.	.	LowGQX	END=151584824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584825	.	G	.	.	LowGQX	END=151584828	GT	./.
chr1	151584829	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584830	.	C	.	.	LowGQX	END=151584831	GT	./.
chr1	151584832	.	G	.	.	LowGQX	END=151584835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584836	.	C	.	.	LowGQX	.	GT	./.
chr1	151584837	.	G	.	.	LowGQX	END=151584840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584841	.	T	.	.	LowGQX	.	GT	./.
chr1	151584842	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584843	.	A	.	.	LowGQX	END=151584845	GT	./.
chr1	151584846	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584847	.	T	.	.	LowGQX	END=151584848	GT	./.
chr1	151584849	.	C	.	.	LowGQX	END=151584852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584853	.	G	.	.	LowGQX	.	GT	./.
chr1	151584854	.	C	.	.	LowGQX	END=151584855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584856	.	A	.	.	LowGQX	END=151584857	GT	./.
chr1	151584858	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584859	.	T	.	.	LowGQX	.	GT	./.
chr1	151584860	.	G	.	.	LowGQX	END=151584862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584863	.	C	.	.	LowGQX	.	GT	./.
chr1	151584864	.	G	.	.	LowGQX	END=151584867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584868	.	G	.	.	LowGQX	.	GT	./.
chr1	151584869	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584870	.	G	.	.	LowGQX	.	GT	./.
chr1	151584871	.	G	.	.	LowGQX	END=151584873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584874	.	A	.	.	LowGQX	.	GT	./.
chr1	151584875	.	A	.	.	LowGQX	END=151584876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584877	.	T	.	.	LowGQX	.	GT	./.
chr1	151584878	.	G	.	.	LowGQX	END=151584880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584881	.	G	.	.	LowGQX	END=151584883	GT	./.
chr1	151584884	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584885	.	A	.	.	LowGQX	END=151584886	GT	./.
chr1	151584887	.	C	.	.	LowGQX	END=151584888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584889	.	A	.	.	LowGQX	END=151584890	GT	./.
chr1	151584891	.	G	.	.	LowGQX	END=151584892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584893	.	G	.	.	LowGQX	.	GT	./.
chr1	151584894	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584895	.	A	.	.	LowGQX	END=151584896	GT	./.
chr1	151584897	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584898	.	T	.	.	LowGQX	.	GT	./.
chr1	151584899	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584900	.	T	.	.	LowGQX	END=151584901	GT	./.
chr1	151584902	.	C	.	.	LowGQX	END=151584906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584907	.	C	.	.	LowGQX	.	GT	./.
chr1	151584908	.	G	.	.	LowGQX	END=151584909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584910	.	T	.	.	LowGQX	.	GT	./.
chr1	151584911	.	G	.	.	LowGQX	END=151584912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584913	.	A	.	.	LowGQX	.	GT	./.
chr1	151584914	.	G	.	.	LowGQX	END=151584915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584916	.	A	.	.	LowGQX	END=151584917	GT	./.
chr1	151584918	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584919	.	T	.	.	LowGQX	.	GT	./.
chr1	151584920	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584921	.	A	.	.	LowGQX	.	GT	./.
chr1	151584922	.	G	.	.	LowGQX	END=151584927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584928	.	T	.	.	LowGQX	.	GT	./.
chr1	151584929	.	G	.	.	LowGQX	END=151584930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584931	.	T	.	.	LowGQX	.	GT	./.
chr1	151584932	.	G	.	.	LowGQX	END=151584934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584935	.	C	.	.	LowGQX	.	GT	./.
chr1	151584936	.	G	.	.	LowGQX	END=151584970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151584971	.	G	.	.	LowGQX	END=151584994	GT	./.
chr1	151611331	.	T	.	.	LowGQX	END=151611597	GT	./.
chr1	151630709	.	A	.	.	LowGQX	END=151630905	GT	./.
chr1	151633257	.	A	.	.	LowGQX	END=151633270	GT	./.
chr1	151633271	.	C	.	.	LowGQX	END=151633356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151634640	.	A	.	.	LowGQX	END=151634748	GT	./.
chr1	151638399	.	T	.	.	LowGQX	END=151638441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151638442	.	A	.	.	LowGQX	.	GT	./.
chr1	151638443	.	C	.	.	LowGQX	END=151638444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151638445	.	G	.	.	LowGQX	.	GT	./.
chr1	151638446	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151638447	.	G	.	.	LowGQX	.	GT	./.
chr1	151638448	.	A	.	.	LowGQX	END=151638449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151638450	.	T	.	.	LowGQX	.	GT	./.
chr1	151638451	.	T	.	.	LowGQX	END=151638452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151638453	.	C	.	.	LowGQX	END=151638498	GT	./.
chr1	151640946	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151640947	.	G	.	.	LowGQX	.	GT	./.
chr1	151640948	.	T	.	.	LowGQX	END=151640954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151640955	.	A	.	.	LowGQX	.	GT	./.
chr1	151640956	.	T	.	.	LowGQX	END=151640970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151640971	.	T	.	.	LowGQX	END=151640974	GT	./.
chr1	151640975	.	C	.	.	LowGQX	END=151640988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151640989	.	A	.	.	LowGQX	END=151641113	GT	./.
chr1	151655827	.	G	.	.	LowGQX	END=151655882	GT	./.
chr1	151655883	.	C	.	.	LowGQX	END=151655913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151655914	.	T	.	.	LowGQX	END=151655916	GT	./.
chr1	151655917	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151655918	.	C	.	.	LowGQX	.	GT	./.
chr1	151655919	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151655920	.	T	.	.	LowGQX	.	GT	./.
chr1	151655921	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151655922	.	G	.	.	LowGQX	.	GT	./.
chr1	151655923	.	T	.	.	LowGQX	END=151655925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151655926	.	G	.	.	LowGQX	.	GT	./.
chr1	151664909	.	A	.	.	LowGQX	END=151665062	GT	./.
chr1	151665385	.	A	.	.	LowGQX	END=151665463	GT	./.
chr1	151665464	.	A	.	.	LowGQX	END=151665473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151665474	.	G	.	.	LowGQX	.	GT	./.
chr1	151665475	.	G	.	.	LowGQX	END=151665493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151665494	.	G	.	.	LowGQX	.	GT	./.
chr1	151665495	.	G	.	.	LowGQX	END=151665517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151665880	.	G	.	.	LowGQX	END=151665911	GT	./.
chr1	151665912	.	C	.	.	LowGQX	END=151665917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151665918	.	T	.	.	LowGQX	END=151665919	GT	./.
chr1	151665920	.	C	.	.	LowGQX	END=151665934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151665935	.	C	.	.	LowGQX	.	GT	./.
chr1	151665936	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151665937	.	G	.	.	LowGQX	.	GT	./.
chr1	151665938	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151665939	.	G	.	.	LowGQX	END=151665940	GT	./.
chr1	151665941	.	G	.	.	LowGQX	END=151665946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151665947	.	G	.	.	LowGQX	.	GT	./.
chr1	151665948	.	T	.	.	LowGQX	END=151665966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151665967	.	T	.	.	LowGQX	.	GT	./.
chr1	151665968	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151665969	.	A	.	.	LowGQX	.	GT	./.
chr1	151665970	.	A	.	.	LowGQX	END=151665979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151666024	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151666025	.	T	.	.	LowGQX	END=151666028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151666029	.	C	.	.	LowGQX	.	GT	./.
chr1	151666030	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151666031	.	A	.	.	LowGQX	END=151666035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151666036	.	C	.	.	LowGQX	.	GT	./.
chr1	151666037	.	T	.	.	LowGQX	END=151666045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151666046	.	C	.	.	LowGQX	.	GT	./.
chr1	151666047	.	A	.	.	LowGQX	END=151666051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151666052	.	C	.	.	LowGQX	END=151666053	GT	./.
chr1	151666054	.	T	.	.	LowGQX	END=151666056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151666057	.	C	.	.	LowGQX	END=151666058	GT	./.
chr1	151666059	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151666060	.	T	.	.	LowGQX	END=151666061	GT	./.
chr1	151666062	.	T	.	.	LowGQX	END=151666063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151666064	.	T	.	.	LowGQX	.	GT	./.
chr1	151666065	.	C	.	.	LowGQX	END=151666069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151666070	.	A	.	.	LowGQX	.	GT	./.
chr1	151666071	.	A	.	.	LowGQX	END=151666079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151666080	.	A	.	.	LowGQX	.	GT	./.
chr1	151666081	.	G	.	.	LowGQX	END=151666083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151666084	.	A	.	.	LowGQX	END=151666085	GT	./.
chr1	151666086	.	T	.	.	LowGQX	END=151666087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151666088	.	A	.	.	LowGQX	.	GT	./.
chr1	151666089	.	T	.	.	LowGQX	END=151666095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151666096	.	A	.	.	LowGQX	.	GT	./.
chr1	151666097	.	T	.	.	LowGQX	END=151666103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151666104	.	C	.	.	LowGQX	END=151666105	GT	./.
chr1	151666106	.	G	.	.	LowGQX	END=151666107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151666108	.	A	.	.	LowGQX	.	GT	./.
chr1	151666109	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151666110	.	A	.	.	LowGQX	.	GT	./.
chr1	151666111	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151666112	.	T	.	.	LowGQX	.	GT	./.
chr1	151666113	.	C	.	.	LowGQX	END=151666114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151666115	.	T	.	.	LowGQX	.	GT	./.
chr1	151666116	.	C	.	.	LowGQX	END=151666121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151666122	.	A	.	.	LowGQX	.	GT	./.
chr1	151666123	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151666820	.	A	.	.	LowGQX	END=151666839	GT	./.
chr1	151666840	.	T	.	.	LowGQX	END=151666857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151666858	.	A	.	.	LowGQX	.	GT	./.
chr1	151666859	.	T	.	.	LowGQX	END=151666872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151666873	.	C	.	.	LowGQX	.	GT	./.
chr1	151666874	.	A	.	.	LowGQX	END=151666896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151666897	.	T	.	.	LowGQX	.	GT	./.
chr1	151666898	.	T	.	.	LowGQX	END=151666908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151666909	.	T	.	.	LowGQX	.	GT	./.
chr1	151666910	.	T	.	.	LowGQX	END=151666919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151675630	.	G	.	.	LowGQX	END=151675636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151675637	.	G	.	.	LowGQX	.	GT	./.
chr1	151675638	.	A	.	.	LowGQX	END=151675640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151675641	.	C	.	.	LowGQX	.	GT	./.
chr1	151675642	.	C	.	.	LowGQX	END=151675643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151675644	.	G	.	.	LowGQX	.	GT	./.
chr1	151675645	.	C	.	.	LowGQX	END=151675660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151675661	.	C	.	.	LowGQX	.	GT	./.
chr1	151675662	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151675663	.	G	.	.	LowGQX	.	GT	./.
chr1	151675664	.	A	.	.	LowGQX	END=151675682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151675683	.	C	.	.	LowGQX	.	GT	./.
chr1	151675684	.	G	.	.	LowGQX	END=151675692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151675693	.	C	.	.	LowGQX	.	GT	./.
chr1	151675694	.	A	.	.	LowGQX	END=151675716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151675717	.	G	.	.	LowGQX	END=151675718	GT	./.
chr1	151675719	.	A	.	.	LowGQX	END=151675726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151675727	.	C	.	.	LowGQX	.	GT	./.
chr1	151675728	.	C	.	.	LowGQX	END=151675731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151675732	.	G	.	.	LowGQX	.	GT	./.
chr1	151675733	.	A	.	.	LowGQX	END=151675756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151677515	.	C	.	.	LowGQX	END=151677525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151677526	.	C	.	.	LowGQX	END=151677646	GT	./.
chr1	151678296	.	A	.	.	LowGQX	END=151678344	GT	./.
chr1	151678345	.	G	.	.	LowGQX	END=151678420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151678421	.	A	.	.	LowGQX	.	GT	./.
chr1	151678422	.	G	.	.	LowGQX	END=151678443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151678658	.	C	.	.	PASS	END=151678660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	151678661	.	A	.	.	PASS	END=151678680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	151678681	.	C	.	.	PASS	END=151678685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr1	151678686	.	G	.	.	PASS	END=151678700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	151678701	.	T	.	.	PASS	END=151678719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:60
chr1	151678720	.	T	.	.	PASS	END=151678742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	151678743	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:48:60
chr1	151678744	.	T	.	.	PASS	END=151678745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	151678746	.	C	.	.	PASS	END=151678747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:42:60
chr1	151678748	.	G	.	.	PASS	END=151678764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	151678765	.	G	.	.	PASS	END=151678785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:39:60
chr1	151678786	.	G	.	.	PASS	END=151678791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	151678792	.	T	.	.	PASS	END=151678798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr1	151678799	.	A	.	.	PASS	END=151678800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:60
chr1	151678801	.	G	.	.	PASS	END=151678818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	151678819	.	T	.	.	PASS	END=151678823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	151678824	.	T	.	.	PASS	END=151678825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	151678826	.	C	.	.	LowGQX	END=151678827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:27:60
chr1	151678828	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	151678829	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:3:60
chr1	151678830	.	G	.	.	PASS	END=151678834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	151678835	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	151678836	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:15:60
chr1	151678837	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	151678838	.	C	.	.	LowGQX	END=151678839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	151679068	.	C	.	.	LowGQX	END=151679227	GT	./.
chr1	151679598	.	A	.	.	LowGQX	END=151679808	GT	./.
chr1	151679981	.	A	.	.	LowGQX	END=151680009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151680010	.	T	.	.	LowGQX	.	GT	./.
chr1	151680011	.	G	.	.	LowGQX	END=151680015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151680016	.	C	.	.	LowGQX	.	GT	./.
chr1	151680017	.	A	.	.	LowGQX	END=151680050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151680051	.	A	.	.	LowGQX	.	GT	./.
chr1	151680052	.	C	.	.	LowGQX	END=151680067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151680068	.	C	.	.	LowGQX	.	GT	./.
chr1	151680069	.	A	.	.	LowGQX	END=151680104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151680105	.	G	.	.	LowGQX	END=151680126	GT	./.
chr1	151680266	.	A	.	.	LowGQX	END=151680413	GT	./.
chr1	151681464	.	T	.	.	LowGQX	END=151681563	GT	./.
chr1	151681694	.	A	.	.	LowGQX	END=151681804	GT	./.
chr1	151681805	.	C	.	.	LowGQX	END=151681822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151681823	.	T	.	.	LowGQX	.	GT	./.
chr1	151681824	.	T	.	.	LowGQX	END=151681826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151682194	.	C	.	.	LowGQX	END=151682293	GT	./.
chr1	151682968	.	T	.	.	LowGQX	END=151682978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151682979	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151682980	.	G	.	.	LowGQX	END=151683022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151683023	.	A	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:4:3.01:60:3
chr1	151683024	.	A	.	.	LowGQX	END=151683025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	151683026	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	151683027	.	T	.	.	LowGQX	END=151683035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	151683036	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	151683037	.	T	.	.	LowGQX	END=151683062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151683063	.	T	.	.	LowGQX	.	GT	./.
chr1	151683064	.	G	.	.	LowGQX	END=151683070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151683071	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151683072	.	C	.	.	LowGQX	END=151683077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151683078	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	151683079	.	T	.	.	LowGQX	END=151683203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151683204	.	T	.	.	LowGQX	END=151683382	GT	./.
chr1	151686945	.	A	.	.	LowGQX	END=151687044	GT	./.
chr1	151687062	.	G	.	.	LowGQX	END=151687161	GT	./.
chr1	151688047	.	T	.	.	LowGQX	END=151688146	GT	./.
chr1	151688350	.	A	.	.	LowGQX	END=151688387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151688388	.	T	.	.	LowGQX	END=151688449	GT	./.
chr1	151688450	.	C	.	.	LowGQX	END=151688498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151689203	.	C	.	.	LowGQX	END=151689302	GT	./.
chr1	151692068	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151692069	.	C	.	.	LowGQX	END=151692073	GT	./.
chr1	151692074	.	T	.	.	LowGQX	END=151692108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151692109	.	A	.	.	LowGQX	END=151692167	GT	./.
chr1	151693951	.	G	.	.	LowGQX	END=151694104	GT	./.
chr1	151694550	.	C	.	.	LowGQX	END=151694649	GT	./.
chr1	151699970	.	A	.	.	LowGQX	END=151699982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151699983	.	T	.	.	LowGQX	.	GT	./.
chr1	151699984	.	G	.	.	LowGQX	END=151699991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151699992	.	A	.	.	LowGQX	.	GT	./.
chr1	151699993	.	G	.	.	LowGQX	END=151700002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151700003	.	G	.	.	LowGQX	.	GT	./.
chr1	151700004	.	C	.	.	LowGQX	END=151700020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151700021	.	C	.	.	LowGQX	.	GT	./.
chr1	151700022	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151700023	.	T	.	.	LowGQX	.	GT	./.
chr1	151700024	.	C	.	.	LowGQX	END=151700047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151700048	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151700049	.	A	.	.	LowGQX	END=151700087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151700088	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151700089	.	T	.	.	LowGQX	END=151700123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151701227	.	T	.	.	LowGQX	END=151701326	GT	./.
chr1	151732524	.	A	.	.	LowGQX	END=151732649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151732650	.	C	.	.	LowGQX	END=151732703	GT	./.
chr1	151733284	.	A	.	.	LowGQX	END=151733383	GT	./.
chr1	151733925	.	A	.	.	LowGQX	END=151734030	GT	./.
chr1	151734557	.	A	.	.	LowGQX	END=151734656	GT	./.
chr1	151734813	.	T	.	.	LowGQX	END=151734978	GT	./.
chr1	151735404	.	C	.	.	LowGQX	END=151735643	GT	./.
chr1	151735801	.	A	.	.	LowGQX	END=151735957	GT	./.
chr1	151739197	.	A	.	.	LowGQX	END=151739364	GT	./.
chr1	151739638	.	G	.	.	LowGQX	END=151739775	GT	./.
chr1	151740533	.	G	.	.	LowGQX	END=151740545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151740546	.	A	.	.	LowGQX	END=151740547	GT	./.
chr1	151740548	.	G	.	.	LowGQX	END=151740564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151740565	.	C	.	.	LowGQX	END=151740566	GT	./.
chr1	151740567	.	C	.	.	LowGQX	END=151740588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151740589	.	A	.	.	LowGQX	END=151740709	GT	./.
chr1	151742586	.	G	.	.	LowGQX	END=151742740	GT	./.
chr1	151743552	.	G	.	.	LowGQX	END=151743557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151743558	.	C	.	.	LowGQX	.	GT	./.
chr1	151743559	.	T	.	.	LowGQX	END=151743568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151743569	.	C	.	.	LowGQX	END=151743735	GT	./.
chr1	151746905	.	C	.	.	LowGQX	END=151746911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151746912	.	A	.	.	LowGQX	END=151746913	GT	./.
chr1	151746914	.	C	.	.	LowGQX	END=151746916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151746917	.	A	.	.	LowGQX	.	GT	./.
chr1	151746918	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151746919	.	G	.	.	LowGQX	.	GT	./.
chr1	151746920	.	C	.	.	LowGQX	END=151746924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151746925	.	A	.	.	LowGQX	.	GT	./.
chr1	151746926	.	C	.	.	LowGQX	END=151746928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151746929	.	C	.	.	LowGQX	.	GT	./.
chr1	151746930	.	A	.	.	LowGQX	END=151746933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151746934	.	T	.	.	LowGQX	END=151747004	GT	./.
chr1	151747184	.	A	.	.	LowGQX	END=151747221	GT	./.
chr1	151747222	.	C	.	.	LowGQX	END=151747235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151747236	.	T	.	.	LowGQX	.	GT	./.
chr1	151747237	.	T	.	.	LowGQX	END=151747239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151747240	.	T	.	.	LowGQX	.	GT	./.
chr1	151747241	.	C	.	.	LowGQX	END=151747250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151747251	.	A	.	.	LowGQX	.	GT	./.
chr1	151747252	.	A	.	.	LowGQX	END=151747284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151747539	.	A	.	.	LowGQX	END=151747644	GT	./.
chr1	151747866	.	A	.	.	LowGQX	END=151748021	GT	./.
chr1	151748279	.	T	.	.	LowGQX	END=151748378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151748570	.	A	.	.	LowGQX	END=151748728	GT	./.
chr1	151748729	.	C	.	.	LowGQX	END=151748738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151748739	.	T	.	.	LowGQX	.	GT	./.
chr1	151748740	.	T	.	.	LowGQX	END=151748746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151748913	.	A	.	.	LowGQX	END=151748925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151748926	.	C	.	.	LowGQX	.	GT	./.
chr1	151748927	.	A	.	.	LowGQX	END=151748934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151748935	.	G	.	.	LowGQX	.	GT	./.
chr1	151748936	.	G	.	.	LowGQX	END=151748938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151748939	.	C	.	.	LowGQX	END=151749077	GT	./.
chr1	151751159	.	A	.	.	LowGQX	END=151751252	GT	./.
chr1	151751253	.	A	.	.	LowGQX	END=151751260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751261	.	C	.	.	LowGQX	.	GT	./.
chr1	151751262	.	A	.	.	LowGQX	END=151751300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751301	.	G	.	.	LowGQX	.	GT	./.
chr1	151751302	.	C	.	.	LowGQX	END=151751304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751305	.	T	.	.	LowGQX	.	GT	./.
chr1	151751306	.	C	.	.	LowGQX	END=151751308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751309	.	C	.	.	LowGQX	.	GT	./.
chr1	151751310	.	T	.	.	LowGQX	END=151751311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751312	.	C	.	.	LowGQX	END=151751313	GT	./.
chr1	151751314	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751315	.	G	.	.	LowGQX	.	GT	./.
chr1	151751316	.	C	.	.	LowGQX	END=151751336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751337	.	A	.	.	LowGQX	.	GT	./.
chr1	151751338	.	A	.	.	LowGQX	END=151751343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751344	.	G	.	.	LowGQX	.	GT	./.
chr1	151751345	.	C	.	.	LowGQX	END=151751350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751351	.	A	.	.	LowGQX	END=151751352	GT	./.
chr1	151751353	.	C	.	.	LowGQX	END=151751357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751358	.	C	.	.	LowGQX	.	GT	./.
chr1	151751359	.	C	.	.	LowGQX	END=151751362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751363	.	C	.	.	LowGQX	END=151751364	GT	./.
chr1	151751365	.	C	.	.	LowGQX	END=151751367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751368	.	T	.	.	LowGQX	END=151751369	GT	./.
chr1	151751370	.	A	.	.	LowGQX	END=151751371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751372	.	G	.	.	LowGQX	END=151751375	GT	./.
chr1	151751376	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751377	.	C	.	.	LowGQX	.	GT	./.
chr1	151751378	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751379	.	C	.	.	LowGQX	.	GT	./.
chr1	151751380	.	T	.	.	LowGQX	END=151751381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751382	.	C	.	.	LowGQX	.	GT	./.
chr1	151751383	.	T	.	.	LowGQX	END=151751387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751388	.	C	.	.	LowGQX	.	GT	./.
chr1	151751389	.	T	.	.	LowGQX	END=151751391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751392	.	T	.	.	LowGQX	.	GT	./.
chr1	151751393	.	T	.	.	LowGQX	END=151751394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751395	.	G	.	.	LowGQX	END=151751396	GT	./.
chr1	151751397	.	T	.	.	LowGQX	END=151751402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751403	.	C	.	.	LowGQX	END=151751434	GT	./.
chr1	151751435	.	T	.	.	LowGQX	END=151751440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751441	.	C	.	.	LowGQX	END=151751442	GT	./.
chr1	151751443	.	G	.	.	LowGQX	END=151751448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751449	.	C	.	.	LowGQX	END=151751451	GT	./.
chr1	151751452	.	C	.	.	LowGQX	END=151751459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751460	.	G	.	.	LowGQX	END=151751461	GT	./.
chr1	151751462	.	A	.	.	LowGQX	END=151751470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751471	.	C	.	.	LowGQX	.	GT	./.
chr1	151751472	.	A	.	.	LowGQX	END=151751473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751474	.	T	.	.	LowGQX	.	GT	./.
chr1	151751475	.	A	.	.	LowGQX	END=151751476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751477	.	C	.	.	LowGQX	.	GT	./.
chr1	151751478	.	A	.	.	LowGQX	END=151751479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751480	.	A	.	.	LowGQX	.	GT	./.
chr1	151751481	.	T	.	.	LowGQX	END=151751484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751577	.	G	.	.	LowGQX	END=151751585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151751586	.	G	.	.	LowGQX	END=151751720	GT	./.
chr1	151752425	.	A	.	.	LowGQX	END=151752618	GT	./.
chr1	151753955	.	A	.	.	LowGQX	END=151754065	GT	./.
chr1	151754421	.	G	.	.	LowGQX	END=151754520	GT	./.
chr1	151755373	.	A	.	.	LowGQX	END=151755542	GT	./.
chr1	151773397	.	G	.	.	LowGQX	END=151773427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151773428	.	C	.	.	LowGQX	.	GT	./.
chr1	151773429	.	C	.	.	LowGQX	END=151773483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151773484	.	T	.	.	LowGQX	END=151773752	GT	./.
chr1	151773753	.	T	.	.	LowGQX	END=151773768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151773769	.	A	.	.	LowGQX	.	GT	./.
chr1	151773770	.	T	.	.	LowGQX	END=151773817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151773818	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151773819	.	C	.	.	LowGQX	END=151773882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151773883	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151773884	.	A	.	.	LowGQX	END=151773920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151773921	.	A	.	.	LowGQX	.	GT	./.
chr1	151773922	.	G	.	.	LowGQX	END=151773964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151773965	.	C	.	.	LowGQX	.	GT	./.
chr1	151773966	.	T	.	.	LowGQX	END=151774008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151774009	.	A	.	.	LowGQX	.	GT	./.
chr1	151774010	.	C	.	.	LowGQX	END=151774022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151774023	.	A	.	.	LowGQX	.	GT	./.
chr1	151774024	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151774025	.	C	.	.	LowGQX	END=151774026	GT	./.
chr1	151774027	.	C	.	.	LowGQX	END=151774031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151774032	.	A	.	.	LowGQX	.	GT	./.
chr1	151774033	.	G	.	.	LowGQX	END=151774088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151774089	.	G	.	.	LowGQX	END=151774358	GT	./.
chr1	151774359	.	G	.	.	LowGQX	END=151774400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151774401	.	A	.	.	LowGQX	.	GT	./.
chr1	151774402	.	G	.	.	LowGQX	END=151774431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151774432	.	A	.	.	LowGQX	.	GT	./.
chr1	151774433	.	C	.	.	LowGQX	END=151774451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151774452	.	A	.	.	LowGQX	.	GT	./.
chr1	151774453	.	G	.	.	LowGQX	END=151774520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151774521	.	T	.	.	LowGQX	.	GT	./.
chr1	151774522	.	G	.	.	LowGQX	END=151774528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151774529	.	T	.	.	LowGQX	.	GT	./.
chr1	151774530	.	C	.	.	LowGQX	END=151774541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151774542	.	T	.	.	LowGQX	.	GT	./.
chr1	151774543	.	T	.	.	LowGQX	END=151774617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151774618	.	T	.	.	LowGQX	.	GT	./.
chr1	151774619	.	C	.	.	LowGQX	END=151774624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151774625	.	T	.	.	LowGQX	END=151775182	GT	./.
chr1	151779946	.	G	.	.	LowGQX	END=151780111	GT	./.
chr1	151783799	.	A	.	.	LowGQX	END=151783912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151785421	.	A	.	.	LowGQX	END=151785535	GT	./.
chr1	151785713	.	A	.	.	LowGQX	END=151785824	GT	./.
chr1	151785962	.	A	.	.	LowGQX	END=151786098	GT	./.
chr1	151787048	.	A	.	.	LowGQX	END=151787173	GT	./.
chr1	151787387	.	A	.	.	LowGQX	END=151787903	GT	./.
chr1	151789107	.	G	.	.	LowGQX	END=151789130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151789131	.	T	.	.	LowGQX	END=151789283	GT	./.
chr1	151789664	.	G	.	.	LowGQX	END=151789707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151789708	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	151789709	.	C	.	.	LowGQX	END=151789716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151789717	.	T	.	.	LowGQX	END=151789763	GT	./.
chr1	151798360	.	G	.	.	LowGQX	END=151798459	GT	./.
chr1	151801813	.	G	.	.	LowGQX	END=151801969	GT	./.
chr1	151803403	.	C	.	.	LowGQX	END=151803605	GT	./.
chr1	151804119	.	T	.	.	LowGQX	END=151804270	GT	./.
chr1	151810403	.	G	.	.	LowGQX	END=151811381	GT	./.
chr1	151811382	.	C	.	.	LowGQX	END=151811406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151811407	.	C	.	.	LowGQX	.	GT	./.
chr1	151811408	.	A	.	.	LowGQX	END=151811474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151819579	.	G	.	.	LowGQX	END=151819959	GT	./.
chr1	151820212	.	A	.	.	LowGQX	END=151820340	GT	./.
chr1	151820656	.	A	.	.	LowGQX	END=151820695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151820696	.	C	.	.	LowGQX	END=151820731	GT	./.
chr1	151820732	.	G	.	.	LowGQX	END=151820770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151823527	.	A	.	.	LowGQX	END=151823669	GT	./.
chr1	151824732	.	A	.	.	LowGQX	END=151824937	GT	./.
chr1	151825917	.	A	.	.	LowGQX	END=151826043	GT	./.
chr1	151847335	.	A	.	.	LowGQX	END=151847434	GT	./.
chr1	151849475	.	A	.	.	LowGQX	END=151849603	GT	./.
chr1	151860747	.	A	.	.	LowGQX	END=151860861	GT	./.
chr1	151861688	.	A	.	.	LowGQX	END=151861775	GT	./.
chr1	151861776	.	G	.	.	LowGQX	END=151861851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151862624	.	G	.	.	LowGQX	END=151862723	GT	./.
chr1	151867416	.	T	.	.	LowGQX	END=151867422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151867423	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151867424	.	T	.	.	LowGQX	END=151867463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	151867464	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	151867465	.	G	.	.	LowGQX	END=151867530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151867531	.	T	.	.	LowGQX	END=151867603	GT	./.
chr1	151867604	.	C	.	.	LowGQX	END=151867661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151867662	.	A	.	.	LowGQX	.	GT	./.
chr1	151867663	.	A	.	.	LowGQX	END=151867675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151881783	.	G	.	.	LowGQX	END=151881936	GT	./.
chr1	151955637	.	G	.	.	LowGQX	END=151955692	GT	./.
chr1	151955693	.	G	.	.	LowGQX	END=151955802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	151958573	.	A	.	.	LowGQX	END=151958708	GT	./.
chr1	152005136	.	C	.	.	LowGQX	END=152005197	GT	./.
chr1	152005198	.	G	.	.	LowGQX	END=152005301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152006122	.	A	.	.	LowGQX	END=152006278	GT	./.
chr1	152009341	.	T	.	.	LowGQX	.	GT	./.
chr1	152009342	.	T	.	.	LowGQX	END=152009343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152009344	.	T	.	.	LowGQX	.	GT	./.
chr1	152009345	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152009346	.	T	.	.	LowGQX	.	GT	./.
chr1	152009347	.	T	.	.	LowGQX	END=152009351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152009352	.	T	.	.	LowGQX	.	GT	./.
chr1	152009353	.	T	.	.	LowGQX	END=152009356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152009357	.	G	.	.	LowGQX	.	GT	./.
chr1	152009358	.	T	.	.	LowGQX	END=152009371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152009372	.	A	.	.	LowGQX	.	GT	./.
chr1	152009373	.	G	.	.	LowGQX	END=152009440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152057441	.	A	.	.	LowGQX	END=152057802	GT	./.
chr1	152057803	.	G	.	.	LowGQX	END=152057902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152057903	.	T	.	.	LowGQX	END=152058240	GT	./.
chr1	152058241	.	C	.	.	LowGQX	END=152058447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152058448	.	T	.	.	LowGQX	END=152058647	GT	./.
chr1	152058648	.	G	.	.	LowGQX	END=152058695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152058696	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	152058697	.	A	.	.	LowGQX	END=152058771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152058772	.	T	.	.	LowGQX	END=152060021	GT	./.
chr1	152060480	.	A	.	.	LowGQX	END=152060621	GT	./.
chr1	152079859	.	A	.	.	LowGQX	END=152079911	GT	./.
chr1	152079912	.	G	.	.	LowGQX	END=152079913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152079914	.	A	.	.	LowGQX	.	GT	./.
chr1	152079915	.	G	.	.	LowGQX	END=152079949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152079950	.	G	.	.	LowGQX	.	GT	./.
chr1	152079951	.	C	.	.	LowGQX	END=152080011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080012	.	C	.	.	LowGQX	.	GT	./.
chr1	152080013	.	T	.	.	LowGQX	END=152080031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080032	.	G	.	.	LowGQX	.	GT	./.
chr1	152080033	.	C	.	.	LowGQX	END=152080051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080052	.	G	.	.	LowGQX	.	GT	./.
chr1	152080053	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080054	.	A	.	.	LowGQX	.	GT	./.
chr1	152080055	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080056	.	T	.	.	LowGQX	.	GT	./.
chr1	152080057	.	T	.	.	LowGQX	END=152080062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080063	.	T	.	.	LowGQX	END=152080123	GT	./.
chr1	152080124	.	T	.	.	LowGQX	END=152080125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080126	.	T	.	.	LowGQX	END=152080127	GT	./.
chr1	152080128	.	C	.	.	LowGQX	END=152080133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080134	.	C	.	.	LowGQX	.	GT	./.
chr1	152080135	.	G	.	.	LowGQX	END=152080141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080142	.	A	.	.	LowGQX	.	GT	./.
chr1	152080143	.	C	.	.	LowGQX	END=152080146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080147	.	T	.	.	LowGQX	.	GT	./.
chr1	152080148	.	C	.	.	LowGQX	END=152080167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080168	.	T	.	.	LowGQX	END=152080169	GT	./.
chr1	152080170	.	T	.	.	LowGQX	END=152080186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080187	.	T	.	.	LowGQX	END=152080188	GT	./.
chr1	152080189	.	T	.	.	LowGQX	END=152080266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080267	.	T	.	.	LowGQX	.	GT	./.
chr1	152080268	.	C	.	.	LowGQX	END=152080273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080274	.	T	.	.	LowGQX	END=152080541	GT	./.
chr1	152080542	.	G	.	.	LowGQX	END=152080590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080591	.	C	.	.	LowGQX	.	GT	./.
chr1	152080592	.	G	.	.	LowGQX	END=152080638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080639	.	C	.	.	LowGQX	.	GT	./.
chr1	152080640	.	G	.	.	LowGQX	END=152080652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080653	.	C	.	.	LowGQX	.	GT	./.
chr1	152080654	.	T	.	.	LowGQX	END=152080656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080657	.	C	.	.	LowGQX	END=152080658	GT	./.
chr1	152080659	.	T	.	.	LowGQX	END=152080676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080677	.	C	.	.	LowGQX	END=152080719	GT	./.
chr1	152080720	.	T	.	.	LowGQX	END=152080721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080722	.	G	.	.	LowGQX	.	GT	./.
chr1	152080723	.	C	.	.	LowGQX	END=152080724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080725	.	C	.	.	LowGQX	.	GT	./.
chr1	152080726	.	T	.	.	LowGQX	END=152080730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080731	.	G	.	.	LowGQX	.	GT	./.
chr1	152080732	.	C	.	.	LowGQX	END=152080743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080744	.	G	.	.	LowGQX	.	GT	./.
chr1	152080745	.	G	.	.	LowGQX	END=152080751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080752	.	C	.	.	LowGQX	.	GT	./.
chr1	152080753	.	T	.	.	LowGQX	END=152080755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080756	.	A	.	.	LowGQX	.	GT	./.
chr1	152080757	.	G	.	.	LowGQX	END=152080823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152080824	.	T	.	.	LowGQX	END=152081487	GT	./.
chr1	152081488	.	T	.	.	LowGQX	END=152081495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152081496	.	C	.	.	LowGQX	.	GT	./.
chr1	152081497	.	A	.	.	LowGQX	END=152081498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152081499	.	C	.	.	LowGQX	.	GT	./.
chr1	152081500	.	T	.	.	LowGQX	END=152081506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152081507	.	C	.	.	LowGQX	.	GT	./.
chr1	152081508	.	C	.	.	LowGQX	END=152081510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152081511	.	C	.	.	LowGQX	.	GT	./.
chr1	152081512	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152081513	.	T	.	.	LowGQX	.	GT	./.
chr1	152081514	.	A	.	.	LowGQX	END=152081516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152081517	.	G	.	.	LowGQX	.	GT	./.
chr1	152081518	.	A	.	.	LowGQX	END=152081520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152081521	.	T	.	.	LowGQX	.	GT	./.
chr1	152081522	.	T	.	.	LowGQX	END=152081528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081529	.	C	.	.	LowGQX	.	GT	./.
chr1	152081530	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081531	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152081532	.	T	.	.	LowGQX	.	GT	./.
chr1	152081533	.	T	.	.	LowGQX	END=152081540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081541	.	G	.	.	LowGQX	END=152081542	GT	./.
chr1	152081543	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081544	.	C	.	.	LowGQX	.	GT	./.
chr1	152081545	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152081546	.	G	.	.	LowGQX	.	GT	./.
chr1	152081547	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081548	.	C	.	.	LowGQX	END=152081549	GT	./.
chr1	152081550	.	C	.	.	LowGQX	END=152081552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081553	.	T	.	.	LowGQX	.	GT	./.
chr1	152081554	.	T	.	.	LowGQX	END=152081555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081556	.	C	.	.	LowGQX	.	GT	./.
chr1	152081557	.	T	.	.	LowGQX	END=152081574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081575	.	C	.	.	LowGQX	.	GT	./.
chr1	152081576	.	C	.	.	LowGQX	END=152081578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081579	.	G	.	.	LowGQX	.	GT	./.
chr1	152081580	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152081581	.	T	.	.	LowGQX	END=152081582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081583	.	C	.	.	LowGQX	.	GT	./.
chr1	152081584	.	T	.	.	LowGQX	END=152081587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081588	.	G	.	.	LowGQX	END=152081589	GT	./.
chr1	152081590	.	C	.	.	LowGQX	END=152081592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081593	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152081594	.	G	.	.	LowGQX	END=152081596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081597	.	C	.	.	LowGQX	END=152081598	GT	./.
chr1	152081599	.	T	.	.	LowGQX	END=152081603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081604	.	G	.	.	LowGQX	.	GT	./.
chr1	152081605	.	C	.	.	LowGQX	END=152081606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081607	.	G	.	.	LowGQX	.	GT	./.
chr1	152081608	.	A	.	.	LowGQX	END=152081609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081610	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152081611	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081612	.	T	.	.	LowGQX	END=152081614	GT	./.
chr1	152081615	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081616	.	G	.	.	LowGQX	.	GT	./.
chr1	152081617	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152081618	.	C	.	.	LowGQX	END=152081619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081620	.	C	.	.	LowGQX	.	GT	./.
chr1	152081621	.	G	.	.	LowGQX	END=152081622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081623	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152081624	.	C	.	.	LowGQX	END=152081625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081626	.	T	.	.	LowGQX	.	GT	./.
chr1	152081627	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081628	.	G	.	.	LowGQX	END=152081629	GT	./.
chr1	152081630	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152081631	.	G	.	.	LowGQX	END=152081632	GT	./.
chr1	152081633	.	G	.	.	LowGQX	END=152081635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081636	.	G	.	.	LowGQX	.	GT	./.
chr1	152081637	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152081638	.	G	.	.	LowGQX	END=152081640	GT	./.
chr1	152081641	.	T	.	.	LowGQX	END=152081648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152081649	.	C	.	.	LowGQX	END=152081651	GT	./.
chr1	152081652	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152081653	.	T	.	.	LowGQX	END=152081655	GT	./.
chr1	152081656	.	T	.	.	LowGQX	END=152081658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152081659	.	A	.	.	LowGQX	.	GT	./.
chr1	152081660	.	G	.	.	LowGQX	END=152081663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152081664	.	C	.	.	LowGQX	.	GT	./.
chr1	152081665	.	T	.	.	LowGQX	END=152081668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152081669	.	C	.	.	LowGQX	.	GT	./.
chr1	152081670	.	C	.	.	LowGQX	END=152081672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152081673	.	C	.	.	LowGQX	END=152081920	GT	./.
chr1	152081921	.	G	.	.	LowGQX	END=152082050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152082051	.	G	.	.	LowGQX	.	GT	./.
chr1	152082052	.	T	.	.	LowGQX	END=152082068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152082069	.	C	.	.	LowGQX	END=152082275	GT	./.
chr1	152082276	.	T	.	.	LowGQX	END=152082332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:23
chr1	152082333	.	T	.	.	LowGQX;LowMQ	END=152082337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:19
chr1	152082338	.	C	.	32.99	LowGQX;LowMQ	DP=2;MQ=19;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:19:3
chr1	152082339	.	C	.	.	LowGQX;LowMQ	END=152082349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:19
chr1	152082350	.	C	.	.	LowGQX;LowMQ	END=152082437	GT	./.
chr1	152082438	.	C	.	.	LowGQX	END=152083633	GT	./.
chr1	152083634	.	C	.	.	LowGQX	END=152083681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083682	.	G	.	.	LowGQX	.	GT	./.
chr1	152083683	.	C	.	.	LowGQX	END=152083686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152083687	.	T	.	.	LowGQX	.	GT	./.
chr1	152083688	.	C	.	.	LowGQX	END=152083689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	152083690	.	A	.	5.68	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:2:0.01:60:0
chr1	152083691	.	G	.	.	LowGQX	END=152083697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152083698	.	T	.	.	LowGQX	.	GT	./.
chr1	152083699	.	T	.	.	LowGQX	END=152083707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152083708	.	T	.	.	LowGQX	.	GT	./.
chr1	152083709	.	C	.	.	LowGQX	END=152083711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152083712	.	G	.	.	LowGQX	.	GT	./.
chr1	152083713	.	C	.	.	LowGQX	END=152083714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152083715	.	T	.	.	LowGQX	.	GT	./.
chr1	152083716	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083717	.	A	.	.	LowGQX	.	GT	./.
chr1	152083718	.	G	.	.	LowGQX	END=152083719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083720	.	C	.	.	LowGQX	END=152083721	GT	./.
chr1	152083722	.	C	.	.	LowGQX	END=152083724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083725	.	C	.	.	LowGQX	.	GT	./.
chr1	152083726	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083727	.	C	.	.	LowGQX	END=152083729	GT	./.
chr1	152083730	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083731	.	C	.	.	LowGQX	END=152083735	GT	./.
chr1	152083736	.	C	.	.	LowGQX	END=152083738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083739	.	G	.	.	LowGQX	END=152083744	GT	./.
chr1	152083745	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083746	.	G	.	.	LowGQX	END=152083747	GT	./.
chr1	152083748	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083749	.	C	.	.	LowGQX	.	GT	./.
chr1	152083750	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083751	.	T	.	.	LowGQX	END=152083820	GT	./.
chr1	152083821	.	C	.	.	LowGQX	END=152083822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083823	.	C	.	.	LowGQX	.	GT	./.
chr1	152083824	.	C	.	.	LowGQX	END=152083825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083826	.	C	.	.	LowGQX	END=152083828	GT	./.
chr1	152083829	.	G	.	.	LowGQX	END=152083830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083831	.	T	.	.	LowGQX	.	GT	./.
chr1	152083832	.	T	.	.	LowGQX	END=152083836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083837	.	C	.	.	LowGQX	.	GT	./.
chr1	152083838	.	G	.	.	LowGQX	END=152083839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083840	.	T	.	.	LowGQX	.	GT	./.
chr1	152083841	.	G	.	.	LowGQX	END=152083877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083878	.	C	.	.	LowGQX	END=152083902	GT	./.
chr1	152083903	.	C	.	.	LowGQX	END=152083950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083951	.	C	.	.	LowGQX	.	GT	./.
chr1	152083952	.	G	.	.	LowGQX	END=152083953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083954	.	T	.	.	LowGQX	.	GT	./.
chr1	152083955	.	T	.	.	LowGQX	END=152083957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083958	.	G	.	.	LowGQX	.	GT	./.
chr1	152083959	.	C	.	.	LowGQX	END=152083960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083961	.	G	.	.	LowGQX	.	GT	./.
chr1	152083962	.	C	.	.	LowGQX	END=152083964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083965	.	A	.	.	LowGQX	.	GT	./.
chr1	152083966	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083967	.	C	.	.	LowGQX	END=152083969	GT	./.
chr1	152083970	.	G	.	.	LowGQX	END=152083972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083973	.	T	.	.	LowGQX	.	GT	./.
chr1	152083974	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083975	.	T	.	.	LowGQX	END=152083976	GT	./.
chr1	152083977	.	C	.	.	LowGQX	END=152083981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083982	.	G	.	.	LowGQX	.	GT	./.
chr1	152083983	.	C	.	.	LowGQX	END=152083984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083985	.	C	.	.	LowGQX	END=152083987	GT	./.
chr1	152083988	.	G	.	.	LowGQX	END=152083989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083990	.	T	.	.	LowGQX	END=152083991	GT	./.
chr1	152083992	.	C	.	.	LowGQX	END=152083994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152083995	.	C	.	.	LowGQX	END=152084001	GT	./.
chr1	152084002	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084003	.	C	.	.	LowGQX	END=152084091	GT	./.
chr1	152084092	.	C	.	.	LowGQX	END=152084098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:55
chr1	152084099	.	A	.	33	LowGQX	DP=3;MQ=57;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:3.01:57:3
chr1	152084100	.	C	.	.	LowGQX	END=152084128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:57
chr1	152084129	.	G	.	33.01	LowGQX	DP=3;MQ=57;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:57:3
chr1	152084130	.	G	.	.	LowGQX	END=152084145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:57
chr1	152084146	.	T	.	36.01	LowGQX	DP=3;MQ=57;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:57:6
chr1	152084147	.	C	.	.	LowGQX	END=152084163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:57
chr1	152084164	.	T	.	.	LowGQX	.	GT	./.
chr1	152084165	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152084166	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152084167	.	C	.	.	LowGQX	END=152084168	GT	./.
chr1	152084169	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152084170	.	C	.	.	LowGQX	.	GT	./.
chr1	152084171	.	T	.	.	LowGQX	END=152084173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152084174	.	G	.	.	LowGQX	END=152084175	GT	./.
chr1	152084176	.	T	.	.	LowGQX	END=152084177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152084178	.	C	.	.	LowGQX	.	GT	./.
chr1	152084179	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152084180	.	G	.	.	LowGQX	.	GT	./.
chr1	152084181	.	C	.	.	LowGQX	END=152084194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152084195	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152084196	.	C	.	.	LowGQX	END=152084206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152084207	.	T	.	.	LowGQX	.	GT	./.
chr1	152084208	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152084209	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	152084210	.	C	.	.	LowGQX	END=152084229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152084230	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	152084231	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152084232	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	152084233	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	152084234	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152084235	.	T	.	32.98	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3:60:3
chr1	152084236	.	T	.	.	LowGQX	END=152084243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152084244	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	152084245	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152084246	.	C	.	.	LowGQX	END=152084254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	152084255	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152084256	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152084257	.	T	.	.	LowGQX	END=152084280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152084281	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152084282	.	T	.	.	LowGQX	END=152084287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152084288	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152084289	.	C	.	.	LowGQX	END=152084291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152084292	.	G	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr1	152084293	.	T	.	.	LowGQX	END=152084294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152084295	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152084296	.	C	.	.	LowGQX	END=152084300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152084301	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	152084302	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152084303	.	T	.	.	LowGQX	.	GT	./.
chr1	152084304	.	C	.	.	LowGQX	END=152084306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152084307	.	C	.	.	LowGQX	END=152084309	GT	./.
chr1	152084310	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152084311	.	T	.	.	LowGQX	.	GT	./.
chr1	152084312	.	C	.	.	LowGQX	END=152084314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152084315	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152084316	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152084317	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152084318	.	T	.	.	LowGQX	.	GT	./.
chr1	152084319	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152084320	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152084321	.	G	.	.	LowGQX	END=152084323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152084324	.	A	.	.	LowGQX	.	GT	./.
chr1	152084325	.	A	.	.	LowGQX	END=152084332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152084333	.	T	.	.	LowGQX	.	GT	./.
chr1	152084334	.	C	.	.	LowGQX	END=152084370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152084371	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152084372	.	C	.	.	LowGQX	END=152084377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152084378	.	C	.	.	LowGQX	END=152084845	GT	./.
chr1	152084846	.	G	.	.	LowGQX	END=152084896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084897	.	G	.	.	LowGQX	.	GT	./.
chr1	152084898	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084899	.	G	.	.	LowGQX	.	GT	./.
chr1	152084900	.	G	.	.	LowGQX	END=152084906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084907	.	T	.	.	LowGQX	.	GT	./.
chr1	152084908	.	T	.	.	LowGQX	END=152084909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084910	.	C	.	.	LowGQX	END=152084911	GT	./.
chr1	152084912	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084913	.	C	.	.	LowGQX	.	GT	./.
chr1	152084914	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084915	.	A	.	.	LowGQX	.	GT	./.
chr1	152084916	.	C	.	.	LowGQX	END=152084919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084920	.	T	.	.	LowGQX	.	GT	./.
chr1	152084921	.	C	.	.	LowGQX	END=152084925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084926	.	T	.	.	LowGQX	.	GT	./.
chr1	152084927	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084928	.	C	.	.	LowGQX	END=152084929	GT	./.
chr1	152084930	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084931	.	C	.	.	LowGQX	END=152084932	GT	./.
chr1	152084933	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084934	.	G	.	.	LowGQX	.	GT	./.
chr1	152084935	.	A	.	.	LowGQX	END=152084936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084937	.	C	.	.	LowGQX	END=152084938	GT	./.
chr1	152084939	.	C	.	.	LowGQX	END=152084945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084946	.	G	.	.	LowGQX	END=152084947	GT	./.
chr1	152084948	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084949	.	C	.	.	LowGQX	END=152084951	GT	./.
chr1	152084952	.	C	.	.	LowGQX	END=152084953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084954	.	T	.	.	LowGQX	END=152084955	GT	./.
chr1	152084956	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084957	.	A	.	.	LowGQX	.	GT	./.
chr1	152084958	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084959	.	T	.	.	LowGQX	.	GT	./.
chr1	152084960	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084961	.	T	.	.	LowGQX	END=152084963	GT	./.
chr1	152084964	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084965	.	T	.	.	LowGQX	.	GT	./.
chr1	152084966	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084967	.	T	.	.	LowGQX	.	GT	./.
chr1	152084968	.	T	.	.	LowGQX	END=152084977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084978	.	G	.	.	LowGQX	.	GT	./.
chr1	152084979	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084980	.	A	.	.	LowGQX	END=152084982	GT	./.
chr1	152084983	.	A	.	.	LowGQX	END=152084984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084985	.	T	.	.	LowGQX	END=152084986	GT	./.
chr1	152084987	.	T	.	.	LowGQX	END=152084993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084994	.	C	.	.	LowGQX	.	GT	./.
chr1	152084995	.	C	.	.	LowGQX	END=152084996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152084997	.	C	.	.	LowGQX	END=152085067	GT	./.
chr1	152085068	.	G	.	.	LowGQX	END=152085069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085070	.	T	.	.	LowGQX	END=152085071	GT	./.
chr1	152085072	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085073	.	T	.	.	LowGQX	.	GT	./.
chr1	152085074	.	C	.	.	LowGQX	END=152085076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085077	.	C	.	.	LowGQX	END=152085081	GT	./.
chr1	152085082	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085083	.	A	.	.	LowGQX	.	GT	./.
chr1	152085084	.	C	.	.	LowGQX	END=152085085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085086	.	C	.	.	LowGQX	.	GT	./.
chr1	152085087	.	C	.	.	LowGQX	END=152085088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085089	.	C	.	.	LowGQX	END=152085090	GT	./.
chr1	152085091	.	G	.	.	LowGQX	END=152085092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085093	.	T	.	.	LowGQX	END=152085094	GT	./.
chr1	152085095	.	C	.	.	LowGQX	END=152085096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085097	.	T	.	.	LowGQX	.	GT	./.
chr1	152085098	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085099	.	A	.	.	LowGQX	END=152085109	GT	./.
chr1	152085110	.	T	.	.	LowGQX	END=152085112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085113	.	G	.	.	LowGQX	.	GT	./.
chr1	152085114	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085115	.	A	.	.	LowGQX	.	GT	./.
chr1	152085116	.	G	.	.	LowGQX	END=152085119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085120	.	C	.	.	LowGQX	END=152085121	GT	./.
chr1	152085122	.	C	.	.	LowGQX	END=152085128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085129	.	T	.	.	LowGQX	.	GT	./.
chr1	152085130	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085131	.	C	.	.	LowGQX	END=152085132	GT	./.
chr1	152085133	.	C	.	.	LowGQX	END=152085135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085136	.	C	.	.	LowGQX	.	GT	./.
chr1	152085137	.	G	.	.	LowGQX	END=152085140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085141	.	T	.	.	LowGQX	.	GT	./.
chr1	152085142	.	T	.	.	LowGQX	END=152085143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085144	.	C	.	.	LowGQX	END=152085145	GT	./.
chr1	152085146	.	G	.	.	LowGQX	END=152085153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085154	.	C	.	.	LowGQX	END=152085156	GT	./.
chr1	152085157	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085158	.	C	.	.	LowGQX	.	GT	./.
chr1	152085159	.	T	.	.	LowGQX	END=152085214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152085215	.	G	.	.	LowGQX	END=152085556	GT	./.
chr1	152086417	.	A	.	.	LowGQX	END=152086558	GT	./.
chr1	152127218	.	T	.	.	LowGQX	END=152127226	GT	./.
chr1	152127227	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:54
chr1	152127228	.	G	.	.	LowGQX	.	GT	./.
chr1	152127229	.	A	.	.	LowGQX	END=152127230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:54
chr1	152127231	.	G	.	.	LowGQX	.	GT	./.
chr1	152127232	.	G	.	.	LowGQX	END=152127247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:54
chr1	152127248	.	T	.	.	LowGQX	.	GT	./.
chr1	152127249	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:54
chr1	152127250	.	G	.	.	LowGQX	.	GT	./.
chr1	152127251	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:54
chr1	152127252	.	T	.	.	LowGQX	.	GT	./.
chr1	152127253	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:54
chr1	152127254	.	T	.	.	LowGQX	END=152127255	GT	./.
chr1	152127256	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:54
chr1	152127257	.	C	.	.	LowGQX	.	GT	./.
chr1	152127258	.	T	.	.	LowGQX	END=152127261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:54
chr1	152127262	.	T	.	.	LowGQX	END=152127341	GT	./.
chr1	152127342	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152127343	.	G	.	.	LowGQX	END=152127344	GT	./.
chr1	152127345	.	C	.	.	LowGQX	END=152127346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152127347	.	C	.	.	LowGQX	.	GT	./.
chr1	152127348	.	G	.	.	LowGQX	END=152127351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152127352	.	C	.	.	LowGQX	.	GT	./.
chr1	152127353	.	T	.	.	LowGQX	END=152127363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152127364	.	C	.	.	LowGQX	.	GT	./.
chr1	152127365	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152127366	.	C	.	.	LowGQX	END=152127367	GT	./.
chr1	152127368	.	T	.	.	LowGQX	END=152127371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152127372	.	T	.	.	LowGQX	.	GT	./.
chr1	152127373	.	A	.	.	LowGQX	END=152127375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152127376	.	G	.	.	LowGQX	.	GT	./.
chr1	152127377	.	G	.	.	LowGQX	END=152127378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152127379	.	T	.	.	LowGQX	.	GT	./.
chr1	152127380	.	C	.	.	LowGQX	END=152127385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152127386	.	T	.	.	LowGQX	.	GT	./.
chr1	152127387	.	C	.	.	LowGQX	END=152127397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152127398	.	C	.	.	LowGQX	.	GT	./.
chr1	152127399	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152127400	.	T	.	.	LowGQX	.	GT	./.
chr1	152127401	.	G	.	.	LowGQX	END=152127407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152127408	.	C	.	.	LowGQX	.	GT	./.
chr1	152127409	.	C	.	.	LowGQX	END=152127424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152127425	.	T	.	.	LowGQX	END=152127426	GT	./.
chr1	152127427	.	T	.	.	LowGQX	END=152127442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152127443	.	T	.	.	LowGQX	END=152127444	GT	./.
chr1	152127445	.	G	.	.	LowGQX	END=152127468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152127469	.	G	.	.	LowGQX	.	GT	./.
chr1	152127470	.	C	.	.	LowGQX	END=152127477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152127478	.	C	.	.	LowGQX	.	GT	./.
chr1	152127479	.	T	.	.	LowGQX	END=152127484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152127485	.	T	.	.	LowGQX	.	GT	./.
chr1	152127486	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152127487	.	A	.	.	LowGQX	.	GT	./.
chr1	152127488	.	C	.	.	LowGQX	END=152127490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152127491	.	T	.	.	LowGQX	END=152128243	GT	./.
chr1	152128244	.	C	.	.	LowGQX	END=152128245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	152128246	.	G	.	.	LowGQX	END=152128247	GT	./.
chr1	152128248	.	C	.	.	LowGQX	END=152128255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	152128256	.	C	.	.	LowGQX	.	GT	./.
chr1	152128257	.	C	.	.	LowGQX	END=152128268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	152128269	.	T	.	.	LowGQX	.	GT	./.
chr1	152128270	.	C	.	.	LowGQX	END=152128272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	152128273	.	G	.	.	LowGQX	.	GT	./.
chr1	152128274	.	C	.	.	LowGQX	END=152128275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	152128276	.	T	.	.	LowGQX	.	GT	./.
chr1	152128277	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:45
chr1	152128278	.	G	.	.	LowGQX	END=152128279	GT	./.
chr1	152128280	.	C	.	.	LowGQX	END=152128281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	152128282	.	G	.	.	LowGQX	END=152128284	GT	./.
chr1	152128285	.	T	.	.	LowGQX	END=152128289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	152128290	.	G	.	.	LowGQX	.	GT	./.
chr1	152128291	.	A	.	.	LowGQX	END=152128292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	152128293	.	C	.	.	LowGQX	END=152128567	GT	./.
chr1	152128568	.	C	.	.	LowGQX	END=152128591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152128592	.	C	.	.	LowGQX	.	GT	./.
chr1	152128593	.	T	.	.	LowGQX	END=152128608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152128609	.	C	.	.	LowGQX	.	GT	./.
chr1	152128610	.	G	.	.	LowGQX	END=152128616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152128617	.	T	.	.	LowGQX	END=152128619	GT	./.
chr1	152128620	.	A	.	.	LowGQX	END=152128621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152128622	.	T	.	.	LowGQX	.	GT	./.
chr1	152128623	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152128624	.	G	.	.	LowGQX	END=152128625	GT	./.
chr1	152128626	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152128627	.	A	.	.	LowGQX	END=152128629	GT	./.
chr1	152128630	.	C	.	.	LowGQX	END=152128632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152128633	.	G	.	.	LowGQX	.	GT	./.
chr1	152128634	.	C	.	.	LowGQX	END=152128636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152128637	.	T	.	.	LowGQX	.	GT	./.
chr1	152128638	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152128639	.	T	.	.	LowGQX	.	GT	./.
chr1	152128640	.	C	.	.	LowGQX	END=152128644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152128645	.	T	.	.	LowGQX	.	GT	./.
chr1	152128646	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152128647	.	T	.	.	LowGQX	.	GT	./.
chr1	152128648	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152128649	.	T	.	.	LowGQX	END=152128672	GT	./.
chr1	152128673	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128674	.	G	.	.	LowGQX	END=152128675	GT	./.
chr1	152128676	.	C	.	.	LowGQX	END=152128680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128681	.	C	.	.	LowGQX	.	GT	./.
chr1	152128682	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128683	.	T	.	.	LowGQX	.	GT	./.
chr1	152128684	.	C	.	.	LowGQX	END=152128688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128689	.	C	.	.	LowGQX	.	GT	./.
chr1	152128690	.	G	.	.	LowGQX	END=152128697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128698	.	A	.	.	LowGQX	.	GT	./.
chr1	152128699	.	A	.	.	LowGQX	END=152128908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128909	.	C	.	.	LowGQX	END=152128923	GT	./.
chr1	152128924	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128925	.	C	.	.	LowGQX	END=152128930	GT	./.
chr1	152128931	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128932	.	T	.	.	LowGQX	END=152128933	GT	./.
chr1	152128934	.	G	.	.	LowGQX	END=152128937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128938	.	T	.	.	LowGQX	.	GT	./.
chr1	152128939	.	G	.	.	LowGQX	END=152128940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128941	.	G	.	.	LowGQX	END=152128943	GT	./.
chr1	152128944	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128945	.	C	.	.	LowGQX	END=152128947	GT	./.
chr1	152128948	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128949	.	T	.	.	LowGQX	.	GT	./.
chr1	152128950	.	T	.	.	LowGQX	END=152128954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128955	.	C	.	.	LowGQX	END=152128960	GT	./.
chr1	152128961	.	C	.	.	LowGQX	END=152128964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128965	.	A	.	.	LowGQX	.	GT	./.
chr1	152128966	.	G	.	.	LowGQX	END=152128967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128968	.	C	.	.	LowGQX	.	GT	./.
chr1	152128969	.	T	.	.	LowGQX	END=152128971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128972	.	A	.	.	LowGQX	.	GT	./.
chr1	152128973	.	C	.	.	LowGQX	END=152128976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128977	.	G	.	.	LowGQX	.	GT	./.
chr1	152128978	.	T	.	.	LowGQX	END=152128990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128991	.	T	.	.	LowGQX	END=152128992	GT	./.
chr1	152128993	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128994	.	A	.	.	LowGQX	.	GT	./.
chr1	152128995	.	A	.	.	LowGQX	END=152128997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152128998	.	T	.	.	LowGQX	END=152129000	GT	./.
chr1	152129001	.	A	.	.	LowGQX	END=152129003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152129004	.	C	.	.	LowGQX	END=152129005	GT	./.
chr1	152129006	.	T	.	.	LowGQX	END=152129021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152129022	.	A	.	.	LowGQX	END=152129023	GT	./.
chr1	152129024	.	T	.	.	LowGQX	END=152129027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152129028	.	T	.	.	LowGQX	.	GT	./.
chr1	152129029	.	G	.	.	LowGQX	END=152129039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152129040	.	C	.	.	LowGQX	.	GT	./.
chr1	152129041	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152129042	.	C	.	.	LowGQX	.	GT	./.
chr1	152129043	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152129044	.	G	.	.	LowGQX	.	GT	./.
chr1	152129045	.	T	.	.	LowGQX	END=152129067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152129068	.	G	.	.	LowGQX	.	GT	./.
chr1	152129069	.	T	.	.	LowGQX	END=152129073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152129074	.	A	.	.	LowGQX	END=152129238	GT	./.
chr1	152129239	.	C	.	.	LowGQX	END=152129422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152129423	.	G	.	.	LowGQX	.	GT	./.
chr1	152129424	.	G	.	.	LowGQX	END=152129438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152130226	.	A	.	.	LowGQX	END=152130367	GT	./.
chr1	152185550	.	A	.	.	LowGQX	END=152186387	GT	./.
chr1	152186388	.	C	.	.	LowGQX;LowMQ	END=152186627	GT	./.
chr1	152186628	.	A	.	.	LowGQX	END=152186634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:31
chr1	152186635	.	A	.	33	LowGQX	DP=2;MQ=31;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:31:3
chr1	152186636	.	C	.	.	LowGQX	END=152186646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:31
chr1	152186647	.	A	.	33	LowGQX	DP=2;MQ=31;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:31:3
chr1	152186648	.	T	.	.	LowGQX	END=152186703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:31
chr1	152186704	.	T	.	.	LowGQX	END=152186719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:44
chr1	152186720	.	T	.	33	LowGQX	DP=2;MQ=45;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:45:3
chr1	152186721	.	G	.	.	LowGQX	END=152186736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:45
chr1	152186737	.	G	.	.	LowGQX	.	GT	./.
chr1	152186738	.	T	.	.	LowGQX	END=152186803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	152186804	.	T	.	.	LowGQX	.	GT	./.
chr1	152186805	.	A	.	.	LowGQX	END=152186858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	152186859	.	A	.	.	LowGQX	END=152187144	GT	./.
chr1	152187145	.	A	.	.	LowGQX;LowMQ	END=152187307	GT	./.
chr1	152187308	.	T	.	.	LowGQX	END=152187412	GT	./.
chr1	152187413	.	G	.	.	LowGQX	END=152187421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	152187422	.	T	.	.	LowGQX	.	GT	./.
chr1	152187423	.	C	.	.	LowGQX	END=152187513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	152187514	.	G	.	33.01	LowGQX	DP=3;MQ=25;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:25:3
chr1	152187515	.	C	.	.	LowGQX	END=152187561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:25
chr1	152187562	.	A	C	28.01	LowGQ;LowGQX	DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=25;MQ0=0;QD=9.34;SB=-28.38	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:6.01:59,6,0:25:6:1.000
chr1	152187563	.	T	.	.	LowGQX	END=152187583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:25
chr1	152187584	.	C	T	20.28	LowGQ;LowGQX	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=32;MQ0=0;MQRankSum=-0.727;QD=5.07;ReadPosRankSum=0.727;SB=-23.62	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,3:4:27.11:50,0,27:32:20:0.750
chr1	152187585	.	G	.	.	LowGQX	END=152187606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:32
chr1	152187607	.	G	.	.	LowGQX	END=152187632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:38
chr1	152187633	.	G	.	36.01	LowGQX	DP=3;MQ=40;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:40:6
chr1	152187634	.	G	.	.	LowGQX	END=152187643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:40
chr1	152187644	.	C	.	36.01	LowGQX	DP=3;MQ=40;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:40:6
chr1	152187645	.	C	.	.	LowGQX	END=152187655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:35
chr1	152187656	.	C	.	33	LowGQX	DP=2;MQ=35;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:35:3
chr1	152187657	.	C	.	.	LowGQX	END=152187658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:35
chr1	152187659	.	T	.	33	LowGQX	DP=2;MQ=35;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:35:3
chr1	152187660	.	G	.	.	LowGQX	END=152187663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:35
chr1	152187664	.	T	.	32.98	LowGQX	DP=2;MQ=35;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:35:3
chr1	152187665	.	T	.	.	LowGQX	END=152187671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:35
chr1	152187672	.	T	.	33	LowGQX	DP=2;MQ=35;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:35:3
chr1	152187673	.	A	.	.	LowGQX	END=152187676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:35
chr1	152187677	.	G	.	.	LowGQX	END=152187680	GT	./.
chr1	152187681	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:43
chr1	152187682	.	T	.	.	LowGQX	.	GT	./.
chr1	152187683	.	C	.	.	LowGQX	END=152187687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	152187688	.	T	.	.	LowGQX	.	GT	./.
chr1	152187689	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:43
chr1	152187690	.	T	.	.	LowGQX	.	GT	./.
chr1	152187691	.	A	.	.	LowGQX	END=152187693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	152187694	.	G	.	.	LowGQX	.	GT	./.
chr1	152187695	.	C	.	.	LowGQX	END=152187696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	152187697	.	G	.	.	LowGQX	.	GT	./.
chr1	152187698	.	T	.	.	LowGQX	END=152187700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	152187701	.	T	.	2.30	LowGQX	DP=1;MQ=43;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:43:0
chr1	152187702	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:43
chr1	152187703	.	T	.	.	LowGQX	.	GT	./.
chr1	152187704	.	C	.	.	LowGQX	END=152187707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	152187708	.	A	.	.	LowGQX	.	GT	./.
chr1	152187709	.	G	.	.	LowGQX	END=152187711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	152187712	.	A	.	.	LowGQX	.	GT	./.
chr1	152187713	.	G	.	.	LowGQX	END=152187714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	152187715	.	G	.	.	LowGQX	.	GT	./.
chr1	152187716	.	G	.	.	LowGQX	END=152187717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	152187718	.	G	.	.	LowGQX	.	GT	./.
chr1	152187719	.	T	.	.	LowGQX	END=152187720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	152187721	.	A	.	.	LowGQX	END=152187772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:25
chr1	152187773	.	T	.	.	LowGQX;LowMQ	END=152187906	GT	./.
chr1	152187907	.	T	.	.	LowGQX	END=152187987	GT	./.
chr1	152187988	.	A	.	.	LowGQX;LowMQ	END=152187998	GT	./.
chr1	152187999	.	A	.	.	LowGQX	END=152188079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:32
chr1	152188080	.	T	.	33.01	LowGQX	DP=3;MQ=38;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:38:3
chr1	152188081	.	A	.	.	LowGQX	END=152188090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:38
chr1	152188091	.	T	.	33.01	LowGQX	DP=3;MQ=38;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:38:3
chr1	152188092	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:38
chr1	152188093	.	A	.	33.01	LowGQX	DP=3;MQ=38;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:38:3
chr1	152188094	.	C	.	.	LowGQX	END=152188108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:38
chr1	152188109	.	T	A	14.92	LowGQ;LowGQX	DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=38;MQ0=0;QD=4.97;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:3.01:45,3,0:38:3:1.000
chr1	152188110	.	G	.	.	LowGQX	END=152188118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:38
chr1	152188119	.	G	.	33.01	LowGQX	DP=3;MQ=38;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:38:3
chr1	152188120	.	A	.	.	LowGQX	END=152188123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:38
chr1	152188124	.	T	.	33.01	LowGQX	DP=3;MQ=38;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:38:3
chr1	152188125	.	C	.	.	LowGQX	END=152188129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:38
chr1	152188130	.	T	.	33.01	LowGQX	DP=3;MQ=38;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:38:3
chr1	152188131	.	G	.	.	LowGQX	END=152188133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:38
chr1	152188134	.	C	.	33.01	LowGQX	DP=3;MQ=38;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:38:3
chr1	152188135	.	T	.	.	LowGQX	END=152188172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:38
chr1	152188173	.	C	.	.	LowGQX	END=152188177	GT	./.
chr1	152188178	.	C	.	.	LowGQX;LowMQ	END=152188325	GT	./.
chr1	152188326	.	C	.	.	LowGQX	END=152188368	GT	./.
chr1	152188369	.	T	.	.	LowGQX	END=152188400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152188401	.	A	.	.	LowGQX	.	GT	./.
chr1	152188402	.	G	.	.	LowGQX	END=152188411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152188412	.	T	.	.	LowGQX	.	GT	./.
chr1	152188413	.	C	.	.	LowGQX	END=152188466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	152188467	.	G	.	36.01	LowGQX	DP=4;MQ=40;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.01:40:6
chr1	152188468	.	C	.	.	LowGQX	END=152188488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:40
chr1	152188489	.	A	.	36.01	LowGQX	DP=4;MQ=40;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:40:6
chr1	152188490	.	C	.	.	LowGQX	END=152188525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:35
chr1	152188526	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:35
chr1	152188527	.	G	.	.	LowGQX	END=152188536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:35
chr1	152188537	.	G	.	.	LowGQX	END=152188538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:35
chr1	152188539	.	A	.	.	LowGQX	END=152188540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:35
chr1	152188541	.	G	.	.	LowGQX	END=152188542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:35
chr1	152188543	.	C	.	36.01	LowGQX	DP=3;MQ=35;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:35:6
chr1	152188544	.	C	.	36	LowGQX	DP=3;MQ=35;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:35:6
chr1	152188545	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:35
chr1	152188546	.	A	.	.	LowGQX	END=152188548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:35
chr1	152188549	.	G	.	33	LowGQX	DP=3;MQ=35;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:35:3
chr1	152188550	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:35
chr1	152188551	.	A	.	.	LowGQX	END=152188553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:35
chr1	152188554	.	C	.	36.01	LowGQX	DP=3;MQ=35;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:35:6
chr1	152188555	.	A	.	.	LowGQX	END=152188557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:35
chr1	152188558	.	C	.	36	LowGQX	DP=3;MQ=35;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:35:6
chr1	152188559	.	C	.	.	LowGQX	END=152188560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:35
chr1	152188561	.	A	.	36.01	LowGQX	DP=3;MQ=35;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:35:6
chr1	152188562	.	T	.	.	LowGQX	END=152188568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:35
chr1	152188569	.	C	.	.	LowGQX	.	GT	./.
chr1	152188570	.	G	.	.	LowGQX	END=152188592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:39
chr1	152188593	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr1	152188594	.	G	.	.	LowGQX	END=152188597	GT	./.
chr1	152188598	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr1	152188599	.	C	.	.	LowGQX	END=152188600	GT	./.
chr1	152188601	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr1	152188602	.	G	.	.	LowGQX	END=152188605	GT	./.
chr1	152188606	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr1	152188607	.	C	.	.	LowGQX	END=152188611	GT	./.
chr1	152188612	.	A	.	33	LowGQX	DP=2;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:27:3
chr1	152188613	.	C	.	.	LowGQX	.	GT	./.
chr1	152188614	.	T	.	.	LowGQX	END=152188616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:27
chr1	152188617	.	G	.	.	LowGQX	END=152188621	GT	./.
chr1	152188622	.	T	.	.	LowGQX	END=152188623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	152188624	.	G	.	.	LowGQX	.	GT	./.
chr1	152188625	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr1	152188626	.	C	.	.	LowGQX	END=152188627	GT	./.
chr1	152188628	.	G	.	.	LowGQX	END=152188629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	152188630	.	T	.	.	LowGQX	.	GT	./.
chr1	152188631	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr1	152188632	.	C	.	.	LowGQX	.	GT	./.
chr1	152188633	.	A	.	.	LowGQX	END=152188635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	152188636	.	G	.	.	LowGQX	END=152188637	GT	./.
chr1	152188638	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr1	152188639	.	C	.	.	LowGQX	.	GT	./.
chr1	152188640	.	T	.	.	LowGQX	END=152188641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	152188642	.	T	.	.	LowGQX	.	GT	./.
chr1	152188643	.	T	.	.	LowGQX	END=152188644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	152188645	.	G	.	.	LowGQX	.	GT	./.
chr1	152188646	.	C	.	.	LowGQX	END=152188648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	152188649	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	152188650	.	A	.	.	LowGQX;LowMQ	END=152188652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:16
chr1	152188653	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	152188654	.	A	.	.	LowGQX;LowMQ	END=152188664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:16
chr1	152188665	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	152188666	.	T	.	.	LowGQX;LowMQ	END=152188680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:16
chr1	152188681	.	C	.	33	LowGQX;LowMQ	DP=3;MQ=16;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:16:3
chr1	152188682	.	T	.	.	LowGQX;LowMQ	END=152188714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:16
chr1	152188715	.	C	.	.	LowGQX;LowMQ	END=152188793	GT	./.
chr1	152188794	.	C	.	.	LowGQX;LowMQ	END=152188798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:14
chr1	152188799	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	152188800	.	G	.	.	LowGQX;LowMQ	END=152188801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:14
chr1	152188802	.	C	.	.	LowGQX;LowMQ	END=152188803	GT	./.
chr1	152188804	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:2:3:18
chr1	152188805	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	152188806	.	A	.	.	LowGQX;LowMQ	END=152188807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:18
chr1	152188808	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	152188809	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:2:3:18
chr1	152188810	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	152188811	.	G	.	.	LowGQX;LowMQ	END=152188812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:18
chr1	152188813	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	152188814	.	G	.	.	LowGQX;LowMQ	END=152188815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:18
chr1	152188816	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	152188817	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:2:3:18
chr1	152188818	.	G	.	.	LowGQX;LowMQ	END=152188819	GT	./.
chr1	152188820	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:2:3:18
chr1	152188821	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	152188822	.	T	.	.	LowGQX;LowMQ	END=152188826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:18
chr1	152188827	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	152188828	.	A	.	.	LowGQX;LowMQ	END=152188830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:18
chr1	152188831	.	C	.	.	LowGQX;LowMQ	END=152188832	GT	./.
chr1	152188833	.	C	.	.	LowGQX;LowMQ	END=152188836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:18
chr1	152188837	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	152188838	.	T	.	.	LowGQX;LowMQ	END=152188843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:18
chr1	152188844	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	152188845	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:2:3:18
chr1	152188846	.	G	.	.	LowGQX;LowMQ	END=152188847	GT	./.
chr1	152188848	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:2:3:18
chr1	152188849	.	A	.	.	LowGQX	END=152188851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	152188852	.	A	.	.	LowGQX	.	GT	./.
chr1	152188853	.	G	.	.	LowGQX	END=152188854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	152188855	.	G	.	.	LowGQX	.	GT	./.
chr1	152188856	.	T	.	.	LowGQX	END=152188857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	152188858	.	A	.	.	LowGQX	.	GT	./.
chr1	152188859	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr1	152188860	.	C	.	.	LowGQX	END=152188861	GT	./.
chr1	152188862	.	G	.	.	LowGQX	END=152188865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	152188866	.	G	.	.	LowGQX	.	GT	./.
chr1	152188867	.	A	.	.	LowGQX	END=152188874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	152188875	.	A	.	.	LowGQX	.	GT	./.
chr1	152188876	.	T	.	.	LowGQX	END=152188878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	152188879	.	G	.	.	LowGQX	.	GT	./.
chr1	152188880	.	C	.	.	LowGQX	END=152188883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	152188884	.	G	.	.	LowGQX	END=152188885	GT	./.
chr1	152188886	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr1	152188887	.	T	.	.	LowGQX	END=152188888	GT	./.
chr1	152188889	.	G	.	.	LowGQX;LowMQ	END=152188893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:18
chr1	152188894	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	152188895	.	C	.	.	LowGQX;LowMQ	END=152188919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:18
chr1	152188920	.	C	.	.	LowGQX;LowMQ	END=152188931	GT	./.
chr1	152188932	.	A	.	.	LowGQX	END=152189168	GT	./.
chr1	152189169	.	G	.	.	LowGQX;LowMQ	END=152189558	GT	./.
chr1	152189559	.	G	.	.	LowGQX	END=152189584	GT	./.
chr1	152189585	.	C	.	.	LowGQX;LowMQ	END=152189735	GT	./.
chr1	152189736	.	C	.	.	LowGQX	END=152190189	GT	./.
chr1	152190190	.	C	.	.	LowGQX;LowMQ	END=152190309	GT	./.
chr1	152190310	.	T	.	.	LowGQX	END=152190877	GT	./.
chr1	152190878	.	T	.	.	LowGQX	END=152191029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152191030	.	G	.	.	LowGQX	END=152191091	GT	./.
chr1	152191092	.	G	.	.	LowGQX;LowMQ	END=152191152	GT	./.
chr1	152191153	.	A	.	.	LowGQX	END=152191322	GT	./.
chr1	152191323	.	G	.	.	LowGQX	END=152191347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152191348	.	A	.	.	LowGQX	.	GT	./.
chr1	152191349	.	C	.	.	LowGQX	END=152191358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152191359	.	A	.	.	LowGQX	.	GT	./.
chr1	152191360	.	C	.	.	LowGQX	END=152191362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152191363	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152191364	.	C	.	.	LowGQX	END=152191365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152191366	.	G	.	.	LowGQX	.	GT	./.
chr1	152191367	.	G	.	.	LowGQX	END=152191417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152191418	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	152191419	.	G	.	.	LowGQX	END=152191424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152191425	.	C	.	.	LowGQX	.	GT	./.
chr1	152191426	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152191427	.	T	.	.	LowGQX	END=152191428	GT	./.
chr1	152191429	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152191430	.	C	.	.	LowGQX	.	GT	./.
chr1	152191431	.	C	.	.	LowGQX	END=152191445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152191446	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152191447	.	T	.	.	LowGQX	END=152191455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152191456	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152191457	.	T	.	.	LowGQX	END=152191475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152191476	.	C	.	.	LowGQX	END=152192294	GT	./.
chr1	152192295	.	A	.	.	LowGQX	END=152192311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152192312	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152192313	.	C	.	.	LowGQX	END=152192420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152192421	.	C	.	.	LowGQX	END=152192846	GT	./.
chr1	152192847	.	A	.	.	LowGQX	END=152192852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152192853	.	A	.	.	LowGQX	.	GT	./.
chr1	152192854	.	G	.	.	LowGQX	END=152192969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152192970	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152192971	.	T	.	.	LowGQX	END=152192977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152192978	.	T	C	14.89	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.45;SB=-25.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	152192979	.	G	.	.	LowGQX	END=152193011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193012	.	C	.	.	LowGQX	END=152193503	GT	./.
chr1	152193504	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193505	.	C	.	.	LowGQX	.	GT	./.
chr1	152193506	.	C	.	.	LowGQX	END=152193508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193509	.	G	.	.	LowGQX	END=152193510	GT	./.
chr1	152193511	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193512	.	C	.	.	LowGQX	.	GT	./.
chr1	152193513	.	C	.	.	LowGQX	END=152193515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193516	.	A	.	.	LowGQX	.	GT	./.
chr1	152193517	.	C	.	.	LowGQX	END=152193541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193542	.	T	.	.	LowGQX	END=152193543	GT	./.
chr1	152193544	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	152193545	.	T	.	.	LowGQX	.	GT	./.
chr1	152193546	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193547	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	152193548	.	G	.	.	LowGQX	END=152193549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193550	.	G	.	.	LowGQX	.	GT	./.
chr1	152193551	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193552	.	C	.	.	LowGQX	END=152193553	GT	./.
chr1	152193554	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193555	.	A	.	.	LowGQX	.	GT	./.
chr1	152193556	.	G	.	.	LowGQX	END=152193562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193563	.	T	.	.	LowGQX	.	GT	./.
chr1	152193564	.	C	.	.	LowGQX	END=152193569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193570	.	A	.	.	LowGQX	END=152193572	GT	./.
chr1	152193573	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193574	.	G	.	.	LowGQX	.	GT	./.
chr1	152193575	.	G	.	.	LowGQX	END=152193581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193582	.	G	.	.	LowGQX	END=152193583	GT	./.
chr1	152193584	.	C	.	.	LowGQX	END=152193597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193598	.	A	.	.	LowGQX	.	GT	./.
chr1	152193599	.	T	.	.	LowGQX	END=152193602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193603	.	G	.	.	LowGQX	.	GT	./.
chr1	152193604	.	G	.	.	LowGQX	END=152193606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193607	.	A	.	.	LowGQX	END=152193610	GT	./.
chr1	152193611	.	A	.	.	LowGQX	END=152193612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193613	.	G	.	.	LowGQX	.	GT	./.
chr1	152193614	.	T	.	.	LowGQX	END=152193615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193616	.	T	.	.	LowGQX	.	GT	./.
chr1	152193617	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193618	.	T	.	.	LowGQX	.	GT	./.
chr1	152193619	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193620	.	T	.	.	LowGQX	.	GT	./.
chr1	152193621	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193622	.	A	.	.	LowGQX	END=152193623	GT	./.
chr1	152193624	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193625	.	A	.	.	LowGQX	.	GT	./.
chr1	152193626	.	C	.	.	LowGQX	END=152193630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193631	.	T	.	.	LowGQX	.	GT	./.
chr1	152193632	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193633	.	T	.	.	LowGQX	.	GT	./.
chr1	152193634	.	T	.	.	LowGQX	END=152193635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193636	.	T	.	.	LowGQX	END=152193638	GT	./.
chr1	152193639	.	A	.	.	LowGQX	END=152193644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193645	.	A	.	.	LowGQX	END=152193647	GT	./.
chr1	152193648	.	C	.	.	LowGQX	END=152193649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193650	.	G	.	.	LowGQX	END=152193651	GT	./.
chr1	152193652	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193653	.	C	.	.	LowGQX	END=152193805	GT	./.
chr1	152193806	.	T	.	.	LowGQX	END=152193809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193810	.	A	.	.	LowGQX	END=152193811	GT	./.
chr1	152193812	.	C	.	.	LowGQX	END=152193813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193814	.	T	.	.	LowGQX	.	GT	./.
chr1	152193815	.	G	.	.	LowGQX	END=152193816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193817	.	A	.	.	LowGQX	.	GT	./.
chr1	152193818	.	A	.	.	LowGQX	END=152193819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193820	.	T	.	.	LowGQX	.	GT	./.
chr1	152193821	.	T	.	.	LowGQX	END=152193825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193826	.	G	.	.	LowGQX	.	GT	./.
chr1	152193827	.	T	.	.	LowGQX	END=152193828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193829	.	A	.	.	LowGQX	.	GT	./.
chr1	152193830	.	T	.	.	LowGQX	END=152193831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193832	.	T	.	.	LowGQX	.	GT	./.
chr1	152193833	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193834	.	T	.	.	LowGQX	.	GT	./.
chr1	152193835	.	G	.	.	LowGQX	END=152193840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193841	.	G	.	.	LowGQX	.	GT	./.
chr1	152193842	.	A	.	.	LowGQX	END=152193847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193848	.	T	.	.	LowGQX	.	GT	./.
chr1	152193849	.	T	.	.	LowGQX	END=152193850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193851	.	C	.	.	LowGQX	.	GT	./.
chr1	152193852	.	G	.	.	LowGQX	END=152193859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193860	.	A	.	.	LowGQX	.	GT	./.
chr1	152193861	.	C	.	.	LowGQX	END=152193866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193867	.	T	.	.	LowGQX	.	GT	./.
chr1	152193868	.	G	.	.	LowGQX	END=152193871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193872	.	A	.	.	LowGQX	END=152193873	GT	./.
chr1	152193874	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193875	.	A	.	.	LowGQX	.	GT	./.
chr1	152193876	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193877	.	C	.	.	LowGQX	.	GT	./.
chr1	152193878	.	A	.	.	LowGQX	END=152193887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193888	.	C	.	.	LowGQX	.	GT	./.
chr1	152193889	.	A	.	.	LowGQX	END=152193890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193891	.	T	.	.	LowGQX	.	GT	./.
chr1	152193892	.	A	.	.	LowGQX	END=152193894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193895	.	A	.	.	LowGQX	.	GT	./.
chr1	152193896	.	T	.	.	LowGQX	END=152193898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193899	.	A	.	.	LowGQX	.	GT	./.
chr1	152193900	.	C	.	.	LowGQX	END=152193907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193908	.	T	.	.	LowGQX	.	GT	./.
chr1	152193909	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193910	.	A	.	.	LowGQX	.	GT	./.
chr1	152193911	.	T	.	.	LowGQX	END=152193922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193923	.	A	.	.	LowGQX	.	GT	./.
chr1	152193924	.	G	.	.	LowGQX	END=152193943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193944	.	A	.	.	LowGQX	.	GT	./.
chr1	152193945	.	C	.	.	LowGQX	END=152193946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193947	.	G	.	.	LowGQX	.	GT	./.
chr1	152193948	.	T	.	.	LowGQX	END=152193956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152193957	.	C	.	.	LowGQX	END=152193968	GT	./.
chr1	152195550	.	A	.	.	LowGQX	END=152195657	GT	./.
chr1	152195658	.	C	.	.	LowGQX	END=152195683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152195684	.	A	.	.	LowGQX	.	GT	./.
chr1	152195685	.	G	.	.	LowGQX	END=152195728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152195729	.	T	.	.	LowGQX	.	GT	./.
chr1	152195730	.	T	.	.	LowGQX	END=152195731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152275125	.	G	.	.	LowGQX	END=152275126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	152275127	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	152275128	.	C	.	.	LowGQX	END=152275130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	152275131	.	G	.	.	LowGQX	END=152275133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	152275134	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	152275135	.	C	.	.	LowGQX	END=152275136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	152275137	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr1	152275138	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	152275139	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	152275140	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	152275141	.	T	.	.	LowGQX	END=152275145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	152275146	.	T	.	.	LowGQX	END=152275151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	152275152	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	152275153	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	152275154	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	152275155	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	152275156	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	152275157	.	T	.	.	LowGQX	END=152275159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	152275160	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	152275161	.	T	.	.	LowGQX	END=152275172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	152275173	.	T	.	.	PASS	END=152275175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	152275176	.	T	.	.	LowGQX	END=152275180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	152275181	.	C	.	.	PASS	END=152275182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	152275183	.	T	.	.	PASS	END=152275184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	152275185	.	G	.	.	PASS	END=152275194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	152275195	.	C	.	.	PASS	END=152275230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	152275231	.	T	.	.	PASS	END=152275249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	152275250	.	A	.	.	PASS	END=152275263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	152275264	.	T	.	.	PASS	END=152275278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	152275279	.	T	.	.	PASS	END=152275311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	152275312	.	G	.	.	PASS	END=152275388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	152275389	.	A	.	.	PASS	END=152275484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	152275485	.	T	.	.	PASS	END=152275573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	152275574	.	G	.	.	PASS	END=152275630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	152275631	.	T	.	.	PASS	END=152275659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	152275660	.	T	.	.	PASS	END=152275680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	152275681	.	T	.	.	PASS	END=152275797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	152275798	.	C	.	.	PASS	END=152275836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	152275837	.	T	.	.	PASS	END=152275881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:59
chr1	152275882	.	C	.	.	PASS	END=152276024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:59
chr1	152276025	.	A	.	.	PASS	END=152276173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:58
chr1	152276174	.	T	.	.	PASS	END=152276252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:47
chr1	152276253	.	C	.	.	PASS	END=152276310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:36
chr1	152276311	.	T	.	.	PASS	END=152276437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:28
chr1	152276438	.	T	.	.	PASS	END=152276500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:37
chr1	152276501	.	T	.	.	PASS	END=152276551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:46
chr1	152276552	.	C	.	.	PASS	END=152276703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:51
chr1	152276704	.	T	.	.	PASS	END=152276792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:58
chr1	152276793	.	C	.	.	PASS	END=152276840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	152276841	.	A	.	.	PASS	END=152277059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:58
chr1	152277060	.	A	.	.	PASS	END=152277117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:55
chr1	152277118	.	T	.	.	PASS	END=152277311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:55
chr1	152277312	.	T	.	.	PASS	END=152277342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:57
chr1	152277343	.	G	.	.	PASS	END=152277418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:58
chr1	152277419	.	G	.	.	PASS	END=152277612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:58
chr1	152277613	.	C	.	.	PASS	END=152277682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:54
chr1	152277683	.	C	.	.	PASS	END=152277799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:53
chr1	152277800	.	G	.	.	PASS	END=152277932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:47
chr1	152277933	.	G	.	.	PASS	END=152277969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:36
chr1	152277970	.	T	.	.	PASS	END=152278057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:34
chr1	152278058	.	C	.	.	PASS	END=152278095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:35
chr1	152278096	.	G	.	.	PASS	END=152278159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:27
chr1	152278160	.	T	.	.	PASS	END=152278245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:87:20
chr1	152278246	.	G	.	.	PASS	END=152278248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:20
chr1	152278249	.	C	.	.	LowMQ	END=152278278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:78:16
chr1	152278279	.	G	.	.	LowMQ	END=152278298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:69:16
chr1	152278299	.	T	.	.	LowMQ	END=152278305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:63:16
chr1	152278306	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:123:42:16
chr1	152278307	.	T	.	.	LowMQ	END=152278314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:72:16
chr1	152278315	.	G	.	.	LowMQ	END=152278318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:48:15
chr1	152278319	.	G	.	.	LowMQ	END=152278322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:54:14
chr1	152278323	.	A	.	.	LowMQ	END=152278326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:51:14
chr1	152278327	.	C	.	.	LowMQ	END=152278328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:63:14
chr1	152278329	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:143:27:14
chr1	152278330	.	T	.	.	LowMQ	END=152278346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:45:12
chr1	152278347	.	G	.	.	LowMQ	END=152278354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:54:14
chr1	152278355	.	C	.	.	LowMQ	END=152278375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:57:14
chr1	152278376	.	G	.	.	LowMQ	END=152278378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:51:15
chr1	152278379	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:152:45:15
chr1	152278380	.	A	.	.	LowMQ	END=152278382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:48:15
chr1	152278383	.	G	.	.	LowMQ	END=152278386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:63:15
chr1	152278387	.	G	.	.	LowMQ	END=152278391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:87:15
chr1	152278392	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:178:69:17
chr1	152278393	.	C	.	.	LowMQ	END=152278409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:87:16
chr1	152278410	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:172:72:17
chr1	152278411	.	T	.	.	LowMQ	END=152278413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:84:17
chr1	152278414	.	T	.	.	LowMQ	END=152278416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:63:18
chr1	152278417	.	T	.	.	LowMQ	END=152278419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:87:18
chr1	152278420	.	T	.	.	LowMQ	END=152278422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:63:18
chr1	152278423	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:162:93:18
chr1	152278424	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:163:69:18
chr1	152278425	.	T	.	.	LowMQ	END=152278426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:93:17
chr1	152278427	.	C	.	.	LowMQ	END=152278428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:63:18
chr1	152278429	.	T	.	.	LowMQ	END=152278431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:81:18
chr1	152278432	.	C	.	.	LowMQ	END=152278433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:54:18
chr1	152278434	.	T	.	105.21	LowMQ	DP=160;MQ=18;MQ0=119	GT:AD:DP:GQ:MQ:GQX	0/0:100:160:75.22:18:75
chr1	152278435	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:161:78:17
chr1	152278436	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:162:51:17
chr1	152278437	.	T	.	.	LowMQ	END=152278442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:60:17
chr1	152278443	.	A	.	.	LowMQ	END=152278444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:42:17
chr1	152278445	.	T	.	.	LowMQ	END=152278447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:63:17
chr1	152278448	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:156:31:17
chr1	152278449	.	T	.	.	LowMQ	END=152278451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:51:17
chr1	152278452	.	T	.	.	LowMQ	END=152278453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:72:17
chr1	152278454	.	C	.	.	LowMQ	END=152278457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:45:17
chr1	152278458	.	T	.	.	LowMQ	END=152278460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:57:16
chr1	152278461	.	A	.	.	LowMQ	END=152278467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:63:16
chr1	152278468	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:164:36:17
chr1	152278469	.	A	.	.	LowMQ	END=152278474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:54:17
chr1	152278475	.	C	.	.	LowMQ	END=152278481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:63:17
chr1	152278482	.	A	.	.	LowMQ	END=152278486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:72:19
chr1	152278487	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:129:69:19
chr1	152278488	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:130:78:20
chr1	152278489	.	G	.	.	LowMQ	END=152278492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:81:19
chr1	152278493	.	T	.	.	LowMQ	END=152278494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:66:19
chr1	152278495	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:128:87:19
chr1	152278496	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:129:66:19
chr1	152278497	.	T	.	.	LowMQ	END=152278506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:75:19
chr1	152278507	.	G	.	.	PASS	END=152278516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:72:20
chr1	152278517	.	G	.	.	PASS	END=152278534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:81:21
chr1	152278535	.	A	.	.	PASS	END=152278558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:28
chr1	152278559	.	C	.	.	PASS	END=152278607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:37
chr1	152278608	.	A	.	.	PASS	END=152278656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:49
chr1	152278657	.	T	.	.	PASS	END=152278753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:49
chr1	152278754	.	G	.	.	PASS	END=152278812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:57
chr1	152278813	.	C	.	.	PASS	END=152278906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:45
chr1	152278907	.	T	.	.	PASS	END=152279064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:39
chr1	152279065	.	C	.	.	PASS	END=152279094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:36
chr1	152279095	.	C	.	.	PASS	END=152279122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:27
chr1	152279123	.	G	.	.	PASS	END=152279131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:25
chr1	152279132	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:106:69:21
chr1	152279133	.	G	.	.	PASS	END=152279147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:75:20
chr1	152279148	.	G	.	.	LowMQ	END=152279162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:81:17
chr1	152279163	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:127:72:17
chr1	152279164	.	C	.	.	LowMQ	END=152279170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:81:17
chr1	152279171	.	T	.	.	LowMQ	END=152279173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:69:17
chr1	152279174	.	C	.	.	LowMQ	END=152279189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:75:16
chr1	152279190	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:145:72:16
chr1	152279191	.	G	.	.	LowMQ	END=152279196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:78:16
chr1	152279197	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:145:63:16
chr1	152279198	.	C	.	.	LowMQ	END=152279202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:81:16
chr1	152279203	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:148:69:16
chr1	152279204	.	G	.	.	LowMQ	END=152279206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:72:15
chr1	152279207	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:147:60:15
chr1	152279208	.	C	.	.	LowMQ	END=152279239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:75:14
chr1	152279240	.	A	.	.	LowMQ	END=152279249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:78:15
chr1	152279250	.	T	.	.	LowMQ	END=152279267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:75:15
chr1	152279268	.	A	.	.	LowMQ	END=152279269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:63:15
chr1	152279270	.	G	.	.	LowMQ	END=152279291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:69:15
chr1	152279292	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:157:66:15
chr1	152279293	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:157:47:15
chr1	152279294	.	T	.	.	LowMQ	END=152279298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:60:15
chr1	152279299	.	C	.	.	LowMQ	END=152279301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:72:15
chr1	152279302	.	T	.	.	LowMQ	END=152279310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:57:14
chr1	152279311	.	T	.	.	LowMQ	END=152279316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:54:14
chr1	152279317	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:158:24:14
chr1	152279318	.	T	.	.	LowMQ	END=152279325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:60:14
chr1	152279326	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:166:54:15
chr1	152279327	.	C	.	.	LowMQ	END=152279348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:63:15
chr1	152279349	.	C	.	.	LowMQ	END=152279350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:72:16
chr1	152279351	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:156:42:16
chr1	152279352	.	A	.	.	LowMQ	END=152279355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:66:16
chr1	152279356	.	C	.	.	LowMQ	END=152279378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:87:17
chr1	152279379	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:164:75:18
chr1	152279380	.	G	.	.	LowMQ	END=152279381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:93:18
chr1	152279382	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:164:63:18
chr1	152279383	.	T	.	.	LowMQ	END=152279385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:84:18
chr1	152279386	.	T	.	.	LowMQ	END=152279387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:60:18
chr1	152279388	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:151:51:18
chr1	152279389	.	T	.	.	LowMQ	END=152279391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:84:18
chr1	152279392	.	T	.	.	LowMQ	END=152279394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:60:18
chr1	152279395	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:146:87:18
chr1	152279396	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:144:54:18
chr1	152279397	.	T	.	.	LowMQ	END=152279398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:81:18
chr1	152279399	.	C	.	.	LowMQ	END=152279400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:51:18
chr1	152279401	.	T	.	.	LowMQ	END=152279403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:87:18
chr1	152279404	.	C	.	.	LowMQ	END=152279405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:54:18
chr1	152279406	.	T	G	799.57	LowMQ	BaseQRankSum=0.619;DP=141;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=39.9083;MQ=18;MQ0=106;MQRankSum=0.442;QD=5.67;ReadPosRankSum=-0.147;SB=-228.35	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:56,84:141:35.91:833,36,0:18:36:0.600
chr1	152279407	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:145:84:18
chr1	152279408	.	C	.	.	LowMQ	END=152279409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:63:18
chr1	152279410	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:145:51:18
chr1	152279411	.	C	.	.	LowMQ	END=152279414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:66:18
chr1	152279415	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:145:54:18
chr1	152279416	.	C	.	.	LowMQ	END=152279417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:75:18
chr1	152279418	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:153:66:18
chr1	152279419	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:153:96:18
chr1	152279420	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:153:25:18
chr1	152279421	.	T	.	.	LowMQ	END=152279423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:69:18
chr1	152279424	.	T	.	.	LowMQ	END=152279425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:81:18
chr1	152279426	.	C	.	.	LowMQ	END=152279431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:60:18
chr1	152279432	.	C	.	.	LowMQ	END=152279435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:78:18
chr1	152279436	.	G	.	.	LowMQ	END=152279439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:72:18
chr1	152279440	.	G	.	.	LowMQ	END=152279442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:54:18
chr1	152279443	.	G	.	.	LowMQ	END=152279445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:63:18
chr1	152279446	.	G	.	.	LowMQ	END=152279450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:78:18
chr1	152279451	.	T	.	.	LowMQ	END=152279452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:66:19
chr1	152279453	.	C	.	.	LowMQ	END=152279456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:75:19
chr1	152279457	.	A	.	.	LowMQ	END=152279462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:63:18
chr1	152279463	.	A	.	.	LowMQ	END=152279465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:75:19
chr1	152279466	.	C	.	.	LowMQ	END=152279471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:66:18
chr1	152279472	.	G	.	.	LowMQ	END=152279480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:75:19
chr1	152279481	.	G	.	.	LowMQ	END=152279486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:69:19
chr1	152279487	.	T	.	.	LowMQ	END=152279490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:60:19
chr1	152279491	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:120:90:19
chr1	152279492	.	T	.	.	PASS	END=152279494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:75:20
chr1	152279495	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:121:63:20
chr1	152279496	.	G	.	.	PASS	END=152279498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:72:20
chr1	152279499	.	G	.	.	PASS	END=152279519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:90:24
chr1	152279520	.	A	.	.	PASS	END=152279552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:93:32
chr1	152279553	.	G	.	.	PASS	END=152279623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:42
chr1	152279624	.	A	.	.	PASS	END=152279660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:55
chr1	152279661	.	A	.	.	PASS	END=152279751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	152279752	.	G	.	.	PASS	END=152279880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:59
chr1	152279881	.	T	.	.	PASS	END=152279944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:59
chr1	152279945	.	T	.	.	PASS	END=152280061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:59
chr1	152280062	.	T	.	.	PASS	END=152280084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:57
chr1	152280085	.	G	.	.	PASS	END=152280159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:42
chr1	152280160	.	C	.	.	PASS	END=152280208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:32
chr1	152280209	.	C	.	.	PASS	END=152280291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:26
chr1	152280292	.	T	.	.	PASS	END=152280377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:34
chr1	152280378	.	C	.	.	PASS	END=152280432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:44
chr1	152280433	.	G	.	.	PASS	END=152280488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:47
chr1	152280489	.	A	.	.	PASS	END=152280513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:53
chr1	152280514	.	C	G	961.69	PASS	BaseQRankSum=-0.143;DP=88;Dels=0.00;FS=5.158;HRun=0;HaplotypeScore=9.5214;MQ=53;MQ0=2;MQRankSum=-2.890;QD=10.93;ReadPosRankSum=-0.523;SB=-397.46	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,44:88:99:992,0,1201:53:99:0.500
chr1	152280515	.	T	.	.	PASS	END=152280551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:53
chr1	152280552	.	A	.	.	PASS	END=152280597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:96:57
chr1	152280598	.	T	.	.	PASS	END=152280605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:58
chr1	152280606	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:82:65:58
chr1	152280607	.	T	.	.	PASS	END=152280693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:58
chr1	152280694	.	G	.	.	PASS	END=152280748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	152280749	.	G	.	.	PASS	END=152280903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	152280904	.	T	.	.	PASS	END=152281054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	152281055	.	T	.	.	PASS	END=152281178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:59
chr1	152281179	.	T	.	.	PASS	END=152281280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:56
chr1	152281281	.	A	.	.	PASS	END=152281564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:57
chr1	152281565	.	T	.	.	PASS	END=152281650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:58
chr1	152281651	.	T	.	.	PASS	END=152281755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:59
chr1	152281756	.	C	.	.	PASS	END=152281869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:59
chr1	152281870	.	T	.	.	PASS	END=152281901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:59
chr1	152281902	.	G	.	.	PASS	END=152281990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:57
chr1	152281991	.	T	.	.	PASS	END=152282052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:87:59
chr1	152282053	.	C	.	.	PASS	END=152282066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	152282067	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:75:60
chr1	152282068	.	A	.	.	PASS	END=152282181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:84:58
chr1	152282182	.	T	.	.	PASS	END=152282231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:78:57
chr1	152282232	.	T	.	.	PASS	END=152282273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:85:60
chr1	152282274	.	G	.	.	PASS	END=152282349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:59
chr1	152282350	.	T	.	.	PASS	END=152282419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:59
chr1	152282420	.	C	.	.	PASS	END=152282443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:78:60
chr1	152282444	.	T	.	.	PASS	END=152282480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	152282481	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:63:60
chr1	152282482	.	C	.	.	PASS	END=152282500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	152282501	.	A	.	.	PASS	END=152282504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:74:60
chr1	152282505	.	A	.	.	PASS	END=152282545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:58
chr1	152282546	.	C	.	.	PASS	END=152282574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:58
chr1	152282575	.	T	.	.	PASS	END=152282608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:58
chr1	152282609	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:70:60
chr1	152282610	.	G	.	.	PASS	END=152282671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	152282672	.	G	.	.	PASS	END=152282683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	152282684	.	G	A	487.78	PASS	BaseQRankSum=0.230;DP=51;Dels=0.00;FS=2.444;HRun=0;HaplotypeScore=20.8322;MQ=60;MQ0=0;MQRankSum=0.871;QD=9.56;ReadPosRankSum=0.591;SB=-265.91	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,23:51:99:518,0,747:60:99:0.469
chr1	152282685	.	T	.	.	PASS	END=152282727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	152282728	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:57:60
chr1	152282729	.	T	.	.	PASS	END=152282783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:98:60
chr1	152282784	.	T	.	.	PASS	END=152282871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	152282872	.	C	.	.	PASS	END=152282970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	152282971	.	C	.	.	PASS	END=152283021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:93:59
chr1	152283022	.	G	.	.	PASS	END=152283121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	152283122	.	C	.	.	PASS	END=152283188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:59
chr1	152283189	.	A	.	.	PASS	END=152283282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:58
chr1	152283283	.	C	.	.	PASS	END=152283339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:59
chr1	152283340	.	T	.	.	PASS	END=152283409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:91:59
chr1	152283410	.	T	.	.	PASS	END=152283481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr1	152283482	.	G	.	.	PASS	END=152283576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:87:60
chr1	152283577	.	G	.	.	PASS	END=152283616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	152283617	.	G	.	.	PASS	END=152283647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	152283648	.	A	.	.	PASS	END=152283903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:53
chr1	152283904	.	G	.	.	PASS	END=152284069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:52
chr1	152284070	.	T	.	.	PASS	END=152284135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:58
chr1	152284136	.	C	.	.	PASS	END=152284179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:57
chr1	152284180	.	C	.	.	PASS	END=152284218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	152284219	.	C	.	.	PASS	END=152284436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:59
chr1	152284437	.	C	.	.	PASS	END=152284548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:59
chr1	152284549	.	G	.	.	PASS	END=152284764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:59
chr1	152284765	.	T	.	.	PASS	END=152284895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:59
chr1	152284896	.	A	.	.	PASS	END=152284947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	152284948	.	G	.	.	PASS	END=152284968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	152284969	.	C	.	.	PASS	END=152285057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	152285058	.	A	.	.	PASS	END=152285131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:59
chr1	152285132	.	C	.	.	PASS	END=152285260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:58
chr1	152285261	.	T	.	.	PASS	END=152285313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	152285314	.	C	.	.	PASS	END=152285477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:59
chr1	152285478	.	C	.	.	PASS	END=152285552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:59
chr1	152285553	.	C	.	.	PASS	END=152285724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:59
chr1	152285725	.	T	.	.	PASS	END=152285896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:59
chr1	152285897	.	T	.	.	PASS	END=152285923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	152285924	.	A	.	.	PASS	END=152286092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:85:59
chr1	152286093	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:57:60
chr1	152286094	.	C	.	.	PASS	END=152286135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:81:60
chr1	152286136	.	A	.	.	PASS	END=152286137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:72:60
chr1	152286138	.	T	.	.	PASS	END=152286176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:86:60
chr1	152286177	.	G	.	.	PASS	END=152286285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:90:59
chr1	152286286	.	C	.	.	PASS	END=152286437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	152286438	.	T	.	.	PASS	END=152286496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	152286497	.	T	.	.	PASS	END=152286657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	152286658	.	G	.	.	PASS	END=152286789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	152286790	.	G	.	.	PASS	END=152286962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	152286963	.	A	.	.	PASS	END=152287065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	152287066	.	T	.	.	PASS	END=152287113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	152287114	.	T	.	.	PASS	END=152287145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	152287146	.	A	.	.	PASS	END=152287182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	152287183	.	T	.	.	PASS	END=152287209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:69:60
chr1	152287210	.	G	.	.	PASS	END=152287212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	152287213	.	T	.	.	PASS	END=152287229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	152287230	.	A	.	.	PASS	END=152287236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	152287237	.	A	.	.	LowGQX	END=152287249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	152287250	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	152287251	.	A	.	.	LowGQX	END=152287259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	152287260	.	G	.	.	LowGQX	END=152287262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	152287263	.	A	.	.	LowGQX	END=152287264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152287265	.	A	.	.	LowGQX	END=152287267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	152287268	.	C	.	.	LowGQX	END=152287270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	152287271	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	152287272	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	152287273	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	152287274	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152287744	.	A	.	.	PASS	END=152287770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	152287771	.	T	.	.	PASS	END=152287794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	152287795	.	C	.	.	PASS	END=152287931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	152287932	.	T	.	.	PASS	END=152287948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	152287949	.	T	.	.	PASS	END=152287983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	152323084	.	T	.	.	LowGQX	END=152323535	GT	./.
chr1	152323536	.	C	.	.	LowGQX	END=152323603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152323604	.	C	.	.	LowGQX	.	GT	./.
chr1	152323605	.	C	.	.	LowGQX	END=152323686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152323687	.	G	.	.	LowGQX	END=152323733	GT	./.
chr1	152323734	.	T	.	.	LowGQX	END=152323772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152323773	.	T	.	.	LowGQX	END=152323996	GT	./.
chr1	152323997	.	G	.	.	LowGQX	END=152324025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152324026	.	G	.	.	LowGQX	.	GT	./.
chr1	152324027	.	T	.	.	LowGQX	END=152324044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152324045	.	G	.	.	LowGQX	.	GT	./.
chr1	152324046	.	A	.	.	LowGQX	END=152324065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152324066	.	G	.	.	LowGQX	.	GT	./.
chr1	152324067	.	A	.	.	LowGQX	END=152324121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152324122	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152324123	.	A	.	.	LowGQX	END=152324147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152324148	.	C	.	.	LowGQX	.	GT	./.
chr1	152324149	.	C	.	.	LowGQX	END=152324152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152324153	.	C	.	.	LowGQX	.	GT	./.
chr1	152324154	.	A	.	.	LowGQX	END=152324168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152324169	.	A	.	.	LowGQX	.	GT	./.
chr1	152324170	.	C	.	.	LowGQX	END=152324176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152324177	.	C	.	.	LowGQX	.	GT	./.
chr1	152324178	.	A	.	.	LowGQX	END=152324179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152324180	.	A	.	.	LowGQX	.	GT	./.
chr1	152324181	.	T	.	.	LowGQX	END=152324182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152324183	.	C	.	.	LowGQX	END=152324184	GT	./.
chr1	152324185	.	C	.	.	LowGQX	END=152324191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152324192	.	C	.	.	LowGQX	.	GT	./.
chr1	152324193	.	A	.	.	LowGQX	END=152324220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152324221	.	T	.	.	LowGQX	END=152325189	GT	./.
chr1	152325190	.	C	.	.	LowGQX	END=152325367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152325368	.	G	.	.	LowGQX	END=152325594	GT	./.
chr1	152325595	.	G	.	.	LowGQX	END=152325648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152325649	.	T	.	.	LowGQX	.	GT	./.
chr1	152325650	.	C	.	.	LowGQX	END=152325740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152325741	.	A	.	.	LowGQX	END=152326028	GT	./.
chr1	152326029	.	C	.	.	LowGQX	END=152326178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152326179	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	152326180	.	T	.	.	LowGQX	END=152326271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152326272	.	T	.	.	LowGQX	END=152326655	GT	./.
chr1	152326656	.	G	.	.	LowGQX	END=152326854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152326855	.	C	.	.	LowGQX	.	GT	./.
chr1	152326856	.	C	.	.	LowGQX	END=152326859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152326860	.	G	.	.	LowGQX	.	GT	./.
chr1	152326861	.	C	.	.	LowGQX	END=152326882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152326883	.	C	.	.	LowGQX	.	GT	./.
chr1	152326884	.	A	.	.	LowGQX	END=152326886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152326887	.	A	.	.	LowGQX	.	GT	./.
chr1	152326888	.	G	.	.	LowGQX	END=152326889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152326890	.	C	.	.	LowGQX	END=152327064	GT	./.
chr1	152327065	.	T	.	.	LowGQX	END=152327072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327073	.	A	.	.	LowGQX	.	GT	./.
chr1	152327074	.	C	.	.	LowGQX	END=152327083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327084	.	G	.	.	LowGQX	END=152327085	GT	./.
chr1	152327086	.	C	.	.	LowGQX	END=152327090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327091	.	A	.	.	LowGQX	.	GT	./.
chr1	152327092	.	C	.	.	LowGQX	END=152327093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327094	.	A	.	.	LowGQX	.	GT	./.
chr1	152327095	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327096	.	T	.	.	LowGQX	END=152327097	GT	./.
chr1	152327098	.	C	.	.	LowGQX	END=152327121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327122	.	T	.	.	LowGQX	END=152327618	GT	./.
chr1	152327619	.	G	.	.	LowGQX	END=152327665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327666	.	C	.	.	LowGQX	END=152327667	GT	./.
chr1	152327668	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327669	.	A	.	.	LowGQX	END=152327670	GT	./.
chr1	152327671	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327672	.	T	.	.	LowGQX	.	GT	./.
chr1	152327673	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327674	.	G	.	.	LowGQX	END=152327676	GT	./.
chr1	152327677	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327678	.	C	.	.	LowGQX	END=152327680	GT	./.
chr1	152327681	.	G	.	.	LowGQX	END=152327684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327685	.	A	.	.	LowGQX	.	GT	./.
chr1	152327686	.	C	.	.	LowGQX	END=152327688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327689	.	T	.	.	LowGQX	.	GT	./.
chr1	152327690	.	A	.	.	LowGQX	END=152327691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327692	.	C	.	.	LowGQX	.	GT	./.
chr1	152327693	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327694	.	A	.	.	LowGQX	END=152327697	GT	./.
chr1	152327698	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327699	.	A	.	.	LowGQX	.	GT	./.
chr1	152327700	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327701	.	T	.	.	LowGQX	END=152327703	GT	./.
chr1	152327704	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327705	.	T	.	.	LowGQX	END=152327706	GT	./.
chr1	152327707	.	G	.	.	LowGQX	END=152327708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327709	.	G	.	.	LowGQX	.	GT	./.
chr1	152327710	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327711	.	C	.	.	LowGQX	END=152327719	GT	./.
chr1	152327720	.	G	.	.	LowGQX	END=152327727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327728	.	T	.	.	LowGQX	.	GT	./.
chr1	152327729	.	A	.	.	LowGQX	END=152327730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152327731	.	C	.	.	LowGQX	END=152327888	GT	./.
chr1	152327889	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:49
chr1	152327890	.	G	.	.	LowGQX	END=152327891	GT	./.
chr1	152327892	.	C	.	.	LowGQX	END=152327893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:49
chr1	152327894	.	G	.	.	LowGQX	END=152327895	GT	./.
chr1	152327896	.	C	.	.	LowGQX	END=152327897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:49
chr1	152327898	.	A	.	.	LowGQX	.	GT	./.
chr1	152327899	.	G	.	.	LowGQX	END=152327909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:49
chr1	152327910	.	G	.	.	LowGQX	.	GT	./.
chr1	152327911	.	C	.	.	LowGQX	END=152327916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:49
chr1	152327917	.	C	.	.	LowGQX	.	GT	./.
chr1	152327918	.	C	.	.	LowGQX	END=152327924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:49
chr1	152327925	.	C	.	.	LowGQX	.	GT	./.
chr1	152327926	.	T	.	.	LowGQX	END=152327949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:49
chr1	152327950	.	C	.	.	LowGQX	.	GT	./.
chr1	152327951	.	C	.	.	LowGQX	END=152327976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:49
chr1	152327977	.	T	.	.	LowGQX	END=152328030	GT	./.
chr1	152328031	.	C	.	.	LowGQX	END=152328066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152328067	.	A	.	.	LowGQX	END=152328108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	152328109	.	C	.	39.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.02:60:9
chr1	152328110	.	C	.	.	LowGQX	END=152328111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	152328112	.	G	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	152328113	.	A	.	.	LowGQX	END=152328114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	152328115	.	G	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	152328116	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	152328117	.	C	.	33.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:60:3
chr1	152328118	.	T	.	.	LowGQX	END=152328132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	152328133	.	C	.	33	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:60:3
chr1	152328134	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	152328135	.	A	.	33	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:60:3
chr1	152328136	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	152328137	.	G	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	152328138	.	T	.	.	LowGQX	END=152328139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	152328140	.	G	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	152328141	.	A	.	.	LowGQX	END=152328142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:60
chr1	152328143	.	C	.	.	LowGQX	END=152328144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	152328145	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:3:60
chr1	152328146	.	A	.	.	LowGQX	END=152328152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152328153	.	T	.	.	LowGQX	END=152328155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152328156	.	T	.	.	LowGQX	.	GT	./.
chr1	152328157	.	T	.	.	LowGQX	END=152328165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152328166	.	C	A	3.07	LowGQX;LowQD;SB	BaseQRankSum=0.000;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=0.000;QD=0.77;ReadPosRankSum=-1.026;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:30.11:30,0,30:60:3:0.500
chr1	152328167	.	C	.	.	LowGQX	END=152328170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	152328171	.	A	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	152328172	.	C	.	.	LowGQX	END=152328177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	152328178	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	152328179	.	G	.	.	LowGQX	END=152328195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152328196	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152328197	.	C	.	.	LowGQX	END=152328233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152328234	.	T	.	.	LowGQX	.	GT	./.
chr1	152328235	.	C	.	.	LowGQX	END=152328238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152328239	.	A	.	.	LowGQX	END=152328240	GT	./.
chr1	152328241	.	C	.	.	LowGQX	END=152328242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152328243	.	A	.	.	LowGQX	END=152328244	GT	./.
chr1	152328245	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152328246	.	A	.	.	LowGQX	.	GT	./.
chr1	152328247	.	A	.	.	LowGQX	END=152328249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152328250	.	T	.	.	LowGQX	.	GT	./.
chr1	152328251	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152328252	.	T	.	.	LowGQX	.	GT	./.
chr1	152328253	.	T	.	.	LowGQX	END=152328254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152328255	.	T	.	.	LowGQX	.	GT	./.
chr1	152328256	.	C	.	.	LowGQX	END=152328266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152328267	.	G	.	.	LowGQX	.	GT	./.
chr1	152328268	.	G	.	.	LowGQX	END=152328276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152328277	.	G	.	.	LowGQX	END=152328278	GT	./.
chr1	152328279	.	G	.	.	LowGQX	END=152328289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152328290	.	A	.	.	LowGQX	.	GT	./.
chr1	152328291	.	T	.	.	LowGQX	END=152328309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152328310	.	T	.	.	LowGQX	END=152329209	GT	./.
chr1	152329210	.	C	.	.	LowGQX	END=152329276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329277	.	A	.	.	LowGQX	.	GT	./.
chr1	152329278	.	G	.	.	LowGQX	END=152329347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329348	.	C	.	.	LowGQX	.	GT	./.
chr1	152329349	.	C	.	.	LowGQX	END=152329352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329353	.	A	.	.	LowGQX	.	GT	./.
chr1	152329354	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329355	.	A	.	.	LowGQX	.	GT	./.
chr1	152329356	.	T	.	.	LowGQX	END=152329358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329359	.	A	.	.	LowGQX	.	GT	./.
chr1	152329360	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329361	.	G	.	.	LowGQX	END=152329362	GT	./.
chr1	152329363	.	G	.	.	LowGQX	END=152329368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329369	.	C	.	.	LowGQX	.	GT	./.
chr1	152329370	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329371	.	A	.	.	LowGQX	.	GT	./.
chr1	152329372	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329373	.	A	.	.	LowGQX	.	GT	./.
chr1	152329374	.	A	.	.	LowGQX	END=152329376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329377	.	T	.	.	LowGQX	END=152329378	GT	./.
chr1	152329379	.	A	.	.	LowGQX	END=152329384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329385	.	T	.	.	LowGQX	END=152329386	GT	./.
chr1	152329387	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329388	.	G	.	.	LowGQX	END=152329391	GT	./.
chr1	152329392	.	C	.	.	LowGQX	END=152329393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329394	.	T	.	.	LowGQX	END=152329395	GT	./.
chr1	152329396	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329397	.	C	.	.	LowGQX	.	GT	./.
chr1	152329398	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329399	.	C	.	.	LowGQX	.	GT	./.
chr1	152329400	.	A	.	.	LowGQX	END=152329410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329411	.	T	.	.	LowGQX	.	GT	./.
chr1	152329412	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329413	.	G	.	.	LowGQX	.	GT	./.
chr1	152329414	.	C	.	.	LowGQX	END=152329416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329417	.	T	.	.	LowGQX	.	GT	./.
chr1	152329418	.	A	.	.	LowGQX	END=152329423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329424	.	A	.	.	LowGQX	.	GT	./.
chr1	152329425	.	T	.	.	LowGQX	END=152329429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329430	.	G	.	.	LowGQX	.	GT	./.
chr1	152329431	.	A	.	.	LowGQX	END=152329438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329439	.	T	.	.	LowGQX	.	GT	./.
chr1	152329440	.	C	.	.	LowGQX	END=152329452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152329453	.	G	.	.	LowGQX	.	GT	./.
chr1	152329454	.	A	.	.	LowGQX	END=152329580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152329581	.	A	.	.	LowGQX	END=152330125	GT	./.
chr1	152331221	.	A	.	.	LowGQX	END=152331362	GT	./.
chr1	152382068	.	A	.	.	LowGQX	END=152382509	GT	./.
chr1	152382510	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152382511	.	T	.	.	LowGQX	.	GT	./.
chr1	152382512	.	A	.	.	LowGQX	END=152382516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152382517	.	A	.	.	LowGQX	.	GT	./.
chr1	152382518	.	G	.	.	LowGQX	END=152382520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152382521	.	T	.	.	LowGQX	.	GT	./.
chr1	152382522	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152382523	.	T	.	.	LowGQX	.	GT	./.
chr1	152382524	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152382525	.	C	.	.	LowGQX	.	GT	./.
chr1	152382526	.	T	.	.	LowGQX	END=152382544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152382545	.	G	.	.	LowGQX	.	GT	./.
chr1	152382546	.	T	.	.	LowGQX	END=152382547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152382548	.	T	.	.	LowGQX	END=152382549	GT	./.
chr1	152382550	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152382551	.	C	.	.	LowGQX	.	GT	./.
chr1	152382552	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:51
chr1	152382553	.	C	.	.	LowGQX	.	GT	./.
chr1	152382554	.	C	.	.	LowGQX	END=152382561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr1	152382562	.	A	.	33	LowGQX	DP=2;MQ=45;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:45:3
chr1	152382563	.	C	.	.	LowGQX	END=152382568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:45
chr1	152382569	.	A	.	33	LowGQX	DP=2;MQ=45;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:45:3
chr1	152382570	.	T	.	.	LowGQX	END=152382578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:45
chr1	152382579	.	C	.	33	LowGQX	DP=2;MQ=45;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:45:3
chr1	152382580	.	T	.	33	LowGQX	DP=2;MQ=45;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:45:3
chr1	152382581	.	C	.	.	LowGQX	END=152382583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:45
chr1	152382584	.	T	.	33	LowGQX	DP=2;MQ=45;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:45:3
chr1	152382585	.	T	.	.	LowGQX	END=152382589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:45
chr1	152382590	.	C	.	.	LowGQX	.	GT	./.
chr1	152382591	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:45
chr1	152382592	.	A	.	33	LowGQX	DP=2;MQ=45;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:45:3
chr1	152382593	.	T	.	.	LowGQX	END=152382599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:45
chr1	152382600	.	A	.	2.30	LowGQX	DP=2;MQ=45;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:2:0:45:0
chr1	152382601	.	C	.	.	LowGQX	END=152382612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:45
chr1	152382613	.	G	.	33	LowGQX	DP=2;MQ=45;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:45:3
chr1	152382614	.	G	.	.	LowGQX	END=152382654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:45
chr1	152382655	.	G	.	.	LowGQX	.	GT	./.
chr1	152382656	.	G	.	.	LowGQX	END=152382665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:37
chr1	152382666	.	G	.	.	LowGQX	END=152382735	GT	./.
chr1	152382736	.	G	.	.	LowGQX	END=152382748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:37
chr1	152382749	.	G	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=37;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:37:3:1.000
chr1	152382750	.	T	.	.	LowGQX	END=152382769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:37
chr1	152382770	.	T	.	.	LowGQX	.	GT	./.
chr1	152382771	.	C	.	.	LowGQX	END=152382779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:37
chr1	152382780	.	C	.	.	LowGQX	.	GT	./.
chr1	152382781	.	C	.	.	LowGQX	END=152382792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:37
chr1	152382793	.	C	.	.	LowGQX	END=152382794	GT	./.
chr1	152382795	.	T	.	.	LowGQX	END=152382801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:37
chr1	152382802	.	T	.	.	LowGQX	.	GT	./.
chr1	152382803	.	C	.	.	LowGQX	END=152382857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:37
chr1	152382858	.	T	.	.	LowGQX	.	GT	./.
chr1	152382859	.	C	.	.	LowGQX	END=152382864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:37
chr1	152382865	.	T	.	.	LowGQX	END=152382996	GT	./.
chr1	152382997	.	C	.	.	LowGQX	END=152382998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152382999	.	C	.	.	LowGQX	.	GT	./.
chr1	152383000	.	A	.	.	LowGQX	END=152383009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383010	.	A	.	.	LowGQX	END=152383011	GT	./.
chr1	152383012	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383013	.	T	.	.	LowGQX	.	GT	./.
chr1	152383014	.	G	.	.	LowGQX	END=152383016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383017	.	G	.	.	LowGQX	.	GT	./.
chr1	152383018	.	G	.	.	LowGQX	END=152383025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383026	.	T	.	.	LowGQX	END=152383027	GT	./.
chr1	152383028	.	T	.	.	LowGQX	END=152383030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383031	.	T	.	.	LowGQX	.	GT	./.
chr1	152383032	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383033	.	G	.	.	LowGQX	.	GT	./.
chr1	152383034	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383035	.	T	.	.	LowGQX	END=152383036	GT	./.
chr1	152383037	.	T	.	.	LowGQX	END=152383039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383040	.	G	.	.	LowGQX	.	GT	./.
chr1	152383041	.	A	.	.	LowGQX	END=152383042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383043	.	T	.	.	LowGQX	.	GT	./.
chr1	152383044	.	C	.	.	LowGQX	END=152383048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383049	.	T	.	.	LowGQX	.	GT	./.
chr1	152383050	.	G	.	.	LowGQX	END=152383052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383053	.	T	.	.	LowGQX	.	GT	./.
chr1	152383054	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383055	.	T	.	.	LowGQX	.	GT	./.
chr1	152383056	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383057	.	A	.	.	LowGQX	END=152383058	GT	./.
chr1	152383059	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383060	.	G	.	.	LowGQX	.	GT	./.
chr1	152383061	.	C	.	.	LowGQX	END=152383063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383064	.	C	.	.	LowGQX	.	GT	./.
chr1	152383065	.	T	.	.	LowGQX	END=152383066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383067	.	A	.	.	LowGQX	.	GT	./.
chr1	152383068	.	C	.	.	LowGQX	END=152383069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383070	.	C	.	.	LowGQX	.	GT	./.
chr1	152383071	.	A	.	.	LowGQX	END=152383073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383074	.	C	.	.	LowGQX	END=152383075	GT	./.
chr1	152383076	.	G	.	.	LowGQX	END=152383079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383080	.	C	.	.	LowGQX	.	GT	./.
chr1	152383081	.	A	.	.	LowGQX	END=152383097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383098	.	T	.	.	LowGQX	.	GT	./.
chr1	152383099	.	C	.	.	LowGQX	END=152383147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152383148	.	T	.	.	LowGQX	END=152383421	GT	./.
chr1	152384570	.	A	.	.	LowGQX	END=152384627	GT	./.
chr1	152384628	.	G	.	.	LowGQX	END=152384670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152384671	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	152384672	.	T	.	.	LowGQX	END=152384685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152384686	.	A	.	.	LowGQX	.	GT	./.
chr1	152384687	.	A	.	.	LowGQX	END=152384711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152484009	.	A	.	.	PASS	END=152484046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	152484047	.	C	.	.	PASS	END=152484083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	152484084	.	C	.	.	PASS	END=152484194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	152484195	.	C	.	.	PASS	END=152484232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	152484233	.	C	.	.	PASS	END=152484268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	152484269	.	T	.	.	PASS	END=152484284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	152484285	.	G	.	.	PASS	END=152484307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	152484308	.	A	.	.	PASS	END=152484331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	152484332	.	T	.	.	PASS	END=152484334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	152484335	.	G	.	.	PASS	END=152484348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	152484349	.	C	.	.	PASS	END=152484351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:45:60
chr1	152484352	.	T	.	.	PASS	END=152484357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	152484358	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:36:60
chr1	152484359	.	T	.	.	PASS	END=152484369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	152487858	.	C	.	.	LowGQX	END=152488003	GT	./.
chr1	152488004	.	G	.	.	LowGQX	END=152488055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152488056	.	G	.	.	LowGQX	.	GT	./.
chr1	152488057	.	A	.	.	LowGQX	END=152488161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152538404	.	G	.	.	LowGQX	END=152538416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	152538417	.	C	.	.	LowGQX	END=152538422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	152538423	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:60
chr1	152538424	.	A	.	.	LowGQX	END=152538431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	152538432	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	152538433	.	G	.	.	LowGQX	END=152538434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	152538435	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	152538436	.	G	.	.	PASS	END=152538440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:57
chr1	152538441	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:57
chr1	152538442	.	G	.	.	PASS	END=152538445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:57
chr1	152538446	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:57
chr1	152538447	.	C	.	.	PASS	END=152538456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:57
chr1	152538457	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:18:57
chr1	152538458	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:36:57
chr1	152538459	.	C	.	.	LowGQX	END=152538465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:55
chr1	152538466	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:55
chr1	152538467	.	C	.	.	LowGQX	END=152538468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:55
chr1	152538469	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:55
chr1	152538470	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:21:55
chr1	152538471	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:55
chr1	152538472	.	A	.	.	LowGQX	END=152538473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:55
chr1	152538474	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:55
chr1	152538475	.	G	.	.	LowGQX	END=152538479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:55
chr1	152538480	.	T	.	.	PASS	END=152538482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:55
chr1	152538483	.	A	.	.	LowGQX	END=152538485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:54
chr1	152538486	.	T	.	.	PASS	END=152538493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:53
chr1	152538494	.	C	.	.	LowGQX	END=152538495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:53
chr1	152538496	.	G	.	.	PASS	END=152538497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:53
chr1	152538498	.	A	.	.	LowGQX	END=152538499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:53
chr1	152538500	.	C	.	.	PASS	END=152538501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:53
chr1	152538502	.	G	.	.	LowGQX	END=152538503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:53
chr1	152538504	.	G	.	.	PASS	END=152538512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:53
chr1	152538513	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:54
chr1	152538514	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:54
chr1	152538515	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:54
chr1	152538516	.	G	.	.	PASS	END=152538517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:54
chr1	152538518	.	T	.	.	LowGQX	END=152538519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:53
chr1	152538520	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:53
chr1	152538521	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:53
chr1	152538522	.	T	.	.	LowGQX	END=152538524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:53
chr1	152538525	.	G	.	.	PASS	END=152538526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:53
chr1	152538527	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:53
chr1	152538528	.	A	.	.	LowGQX	END=152538530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:53
chr1	152538531	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:53
chr1	152538532	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:53
chr1	152538533	.	C	.	.	PASS	END=152538538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:53
chr1	152538539	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:54
chr1	152538540	.	C	.	.	PASS	END=152538542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:54
chr1	152538543	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:54
chr1	152538544	.	G	.	.	PASS	END=152538546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:54
chr1	152538547	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:54
chr1	152538548	.	G	.	.	PASS	END=152538550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:54
chr1	152538551	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:54
chr1	152538552	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:36:54
chr1	152538553	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:54
chr1	152538554	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:54
chr1	152538555	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:54
chr1	152538556	.	G	.	.	PASS	END=152538561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:54
chr1	152538562	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:54
chr1	152538563	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:54
chr1	152538564	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:55
chr1	152538565	.	G	.	.	PASS	END=152538566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:55
chr1	152538567	.	T	.	.	LowGQX	END=152538568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:21:55
chr1	152538569	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:55
chr1	152538570	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:55
chr1	152538571	.	G	.	.	PASS	END=152538572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:55
chr1	152538573	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:55
chr1	152538574	.	A	.	.	PASS	END=152538575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:55
chr1	152538576	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:1:55
chr1	152538577	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:55
chr1	152538578	.	C	.	.	PASS	END=152538579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:55
chr1	152538580	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:55
chr1	152538581	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:55
chr1	152538582	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:55
chr1	152538583	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:55
chr1	152538584	.	G	.	.	LowGQX	END=152538585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:27:55
chr1	152538586	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:18:57
chr1	152538587	.	G	.	.	LowGQX	END=152538588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:57
chr1	152538589	.	T	.	48.03	LowGQX	DP=14;MQ=57;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:11:14:18.03:57:18
chr1	152538590	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:57
chr1	152538591	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:57
chr1	152538592	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:18:57
chr1	152538593	.	G	.	.	PASS	END=152538599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:58
chr1	152538600	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:58
chr1	152538601	.	C	.	.	PASS	END=152538602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:58
chr1	152538603	.	G	.	.	PASS	END=152538607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:58
chr1	152538608	.	G	.	.	PASS	END=152538611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:58
chr1	152538612	.	T	.	69.12	PASS	DP=27;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:21:27:39.13:58:39
chr1	152538613	.	C	.	.	PASS	END=152538615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:58
chr1	152538616	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:45:58
chr1	152538617	.	G	.	.	PASS	END=152538620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:58
chr1	152538621	.	G	.	.	PASS	END=152538622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:58
chr1	152538623	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:63:58
chr1	152538624	.	A	.	.	PASS	END=152538625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:48:58
chr1	152538626	.	T	.	.	PASS	END=152538630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:58
chr1	152538631	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:39:58
chr1	152538632	.	G	.	.	PASS	END=152538633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:48:58
chr1	152538634	.	G	.	.	PASS	END=152538636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:58
chr1	152538637	.	G	.	.	PASS	END=152538639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:59
chr1	152538640	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:45:59
chr1	152538641	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:63:59
chr1	152538642	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:48:59
chr1	152538643	.	G	.	.	PASS	END=152538645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:59
chr1	152538646	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:30:59
chr1	152538647	.	G	.	.	PASS	END=152538651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:59
chr1	152538652	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:33:59
chr1	152538653	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:45:59
chr1	152538654	.	G	.	.	PASS	END=152538667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:59
chr1	152538668	.	T	.	.	PASS	END=152538669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:60
chr1	152538670	.	C	.	.	PASS	END=152538686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	152552132	.	G	.	.	LowGQX	END=152552136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	152552137	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	152552138	.	C	.	.	LowGQX	END=152552144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	152552145	.	C	.	.	PASS	END=152552146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	152552147	.	C	.	.	LowGQX	END=152552148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	152552149	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	152552150	.	G	.	.	LowGQX	END=152552159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	152552160	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:2:60
chr1	152552161	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	152552162	.	C	.	.	LowGQX	END=152552163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:60
chr1	152552164	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr1	152552165	.	C	.	.	LowGQX	END=152552169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	152552170	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:1:60
chr1	152552171	.	C	.	.	LowGQX	END=152552173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	152552174	.	C	.	.	PASS	END=152552178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	152552179	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr1	152552180	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	152552181	.	G	.	.	LowGQX	END=152552186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:59
chr1	152552187	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:59
chr1	152552188	.	A	.	.	LowGQX	END=152552190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:58
chr1	152552191	.	G	.	.	PASS	END=152552195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:57
chr1	152552196	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:57
chr1	152552197	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:0:57
chr1	152552198	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:57
chr1	152552199	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:57
chr1	152552200	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:57
chr1	152552201	.	C	.	.	PASS	END=152552205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:57
chr1	152552206	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:57
chr1	152552207	.	T	.	.	PASS	END=152552210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:57
chr1	152552211	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:57
chr1	152552212	.	C	.	.	PASS	END=152552217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:56
chr1	152552218	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:56
chr1	152552219	.	C	.	.	PASS	END=152552228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:56
chr1	152552229	.	G	.	.	PASS	END=152552236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:57
chr1	152552237	.	C	.	.	PASS	END=152552240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:58
chr1	152552241	.	T	.	.	PASS	END=152552245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:58
chr1	152552246	.	T	.	.	PASS	END=152552251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:58
chr1	152552252	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:28:58
chr1	152552253	.	G	.	.	PASS	END=152552255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:58
chr1	152552256	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:39:58
chr1	152552257	.	G	.	.	PASS	END=152552283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:58
chr1	152552284	.	G	.	.	PASS	END=152552310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:58
chr1	152552311	.	G	.	.	PASS	END=152552315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:59
chr1	152552316	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:90:59
chr1	152552317	.	T	.	.	PASS	END=152552320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:66:59
chr1	152552321	.	G	.	.	PASS	END=152552328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:59
chr1	152552329	.	C	.	.	PASS	END=152552363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:59
chr1	152552364	.	G	.	.	PASS	END=152552414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	152573195	.	C	.	.	PASS	END=152573280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	152573281	.	G	.	.	PASS	END=152573323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	152573324	.	A	.	.	PASS	END=152573429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	152573430	.	A	.	.	PASS	END=152573448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	152573449	.	G	.	.	PASS	END=152573468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	152573469	.	C	.	.	PASS	END=152573482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	152573483	.	C	.	.	PASS	END=152573494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	152586236	.	T	.	.	PASS	END=152586268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	152586269	.	C	.	.	PASS	END=152586312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	152586313	.	G	.	.	PASS	END=152586487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	152586488	.	C	.	.	PASS	END=152586540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	152586541	.	C	.	.	PASS	END=152586555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	152586556	.	C	.	.	PASS	END=152586564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	152586565	.	C	.	.	PASS	END=152586583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:97:60
chr1	152586584	.	T	.	.	PASS	END=152586620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	152586621	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:75:60
chr1	152586622	.	T	.	.	PASS	END=152586625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	152595308	.	G	.	.	LowGQX	END=152595311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	152595312	.	A	.	.	LowGQX	END=152595320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	152595321	.	C	.	.	LowGQX	END=152595330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	152595331	.	G	.	.	LowGQX	END=152595339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	152595340	.	G	.	.	LowGQX	END=152595356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	152595357	.	G	.	.	LowGQX	END=152595360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	152595361	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	152595362	.	C	.	.	LowGQX	END=152595363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	152595364	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	152595365	.	C	.	.	LowGQX	END=152595376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	152595377	.	C	.	.	LowGQX	END=152595378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	152595379	.	G	.	.	LowGQX	END=152595382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	152595383	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	152595384	.	T	.	.	LowGQX	END=152595395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	152595396	.	A	.	.	LowGQX	END=152595397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	152595398	.	C	.	.	LowGQX	END=152595401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	152595402	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:60
chr1	152595403	.	A	.	.	LowGQX	END=152595404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	152595405	.	G	.	.	PASS	END=152595408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	152595409	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	152595410	.	G	.	.	PASS	END=152595416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	152595417	.	G	.	.	PASS	END=152595431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	152595432	.	T	.	.	PASS	END=152595444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	152595445	.	G	.	.	PASS	END=152595451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	152595452	.	G	.	.	PASS	END=152595478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	152595479	.	G	.	.	PASS	END=152595484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	152595485	.	C	.	.	PASS	END=152595507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	152595508	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:71:60
chr1	152595509	.	C	.	.	PASS	END=152595531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	152595532	.	G	.	.	PASS	END=152595581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	152636580	.	G	.	.	PASS	END=152636603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	152636604	.	A	.	.	PASS	END=152636628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr1	152636629	.	T	.	.	PASS	END=152636640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr1	152636641	.	T	.	.	PASS	END=152636650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	152636651	.	T	.	.	PASS	END=152636653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr1	152636654	.	C	.	.	PASS	END=152636679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	152636680	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:42:60
chr1	152636681	.	C	.	.	PASS	END=152636684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	152636685	.	A	.	.	PASS	END=152636692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	152636693	.	G	.	.	PASS	END=152636702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	152636703	.	C	.	.	PASS	END=152636727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	152636728	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	152636729	.	C	.	.	PASS	END=152636734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	152636735	.	T	.	.	LowGQX	END=152636736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	152636737	.	T	.	.	PASS	END=152636740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	152636741	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	152636742	.	G	.	.	PASS	END=152636749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	152636750	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	152636751	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	152636752	.	T	.	.	LowGQX	END=152636753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	152636754	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	152636755	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	152636756	.	A	.	.	PASS	END=152636758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	152636759	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	152636760	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	152636761	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	152636762	.	G	.	.	PASS	END=152636765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	152636766	.	G	.	.	LowGQX	END=152636772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	152636773	.	C	.	18.01	LowGQX	DP=10;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:0.26:60:0
chr1	152636774	.	A	.	.	LowGQX	END=152636786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	152636787	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	152636788	.	T	.	48.05	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:18.06:60:18
chr1	152636789	.	G	.	.	LowGQX	END=152636791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	152636792	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	152636793	.	G	.	.	LowGQX	END=152636795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	152636796	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	152636797	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:12:60
chr1	152636798	.	C	.	.	LowGQX	END=152636800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	152636801	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	152636802	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	152636803	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	152636804	.	C	.	.	LowGQX	END=152636806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	152636807	.	C	.	51.06	LowGQX	DP=11;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:11:21.07:60:21
chr1	152636808	.	A	.	.	LowGQX	END=152636809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	152636810	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	152636811	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	152636812	.	G	.	.	LowGQX	END=152636815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	152636816	.	C	.	.	LowGQX	END=152636817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	152636818	.	T	.	.	LowGQX	END=152636819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	152636820	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	152636821	.	C	.	.	LowGQX	END=152636822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	152636823	.	T	.	42.03	LowGQX	DP=8;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:8:12.04:60:12
chr1	152636824	.	C	.	.	LowGQX	END=152636825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	152636826	.	A	.	36.01	LowGQX	DP=8;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:8:6.02:60:6
chr1	152636827	.	C	.	.	LowGQX	END=152636828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	152636829	.	G	.	.	LowGQX	END=152636830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	152636831	.	C	.	.	LowGQX	END=152636832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	152636833	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	152636834	.	C	.	.	LowGQX	END=152636835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	152636836	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:60
chr1	152636837	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	152636838	.	A	.	.	LowGQX	END=152636839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	152636840	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:60
chr1	152636841	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	152636842	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:60
chr1	152636843	.	A	.	.	LowGQX	END=152636846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	152636847	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	152636848	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	152636849	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	152636850	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	152636851	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr1	152636852	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	152636853	.	G	.	.	LowGQX	END=152636854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	152636855	.	T	.	.	LowGQX	END=152636856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	152636857	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr1	152636858	.	G	.	.	LowGQX	END=152636861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	152636862	.	G	.	.	LowGQX	END=152636864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	152636865	.	A	.	.	LowGQX	END=152636866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:60
chr1	152636867	.	C	.	.	LowGQX	END=152636868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	152636869	.	T	.	.	LowGQX	END=152636872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	152636873	.	G	.	.	LowGQX	END=152636874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	152636875	.	G	.	.	LowGQX	END=152636878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	152636879	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	152636880	.	C	.	.	LowGQX	END=152636882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	152636883	.	G	.	.	LowGQX	END=152636887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152636888	.	T	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	152636889	.	G	.	.	LowGQX	END=152636890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	152636891	.	C	.	.	LowGQX	END=152636904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	152636905	.	C	.	.	LowGQX	END=152636906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	152636907	.	G	.	.	LowGQX	END=152636916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	152648490	.	G	.	.	PASS	END=152648495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	152648496	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:36:60
chr1	152648497	.	T	.	.	PASS	END=152648528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	152648529	.	C	.	.	PASS	END=152648536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	152648537	.	T	.	.	PASS	END=152648548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr1	152648549	.	T	.	.	PASS	END=152648550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chr1	152648551	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:60
chr1	152648552	.	A	.	.	PASS	END=152648572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	152648573	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	152648574	.	G	.	.	PASS	END=152648586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	152648587	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	152648588	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:1:60
chr1	152648589	.	C	.	.	PASS	END=152648596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	152648597	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	152648598	.	G	.	.	PASS	END=152648602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	152648603	.	G	.	.	LowGQX	END=152648606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	152648607	.	C	.	.	LowGQX	END=152648611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	152648612	.	T	.	.	LowGQX	END=152648621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152648622	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr1	152648623	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	152648624	.	T	.	.	LowGQX	END=152648628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	152648629	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	152648630	.	T	.	.	LowGQX	END=152648635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	152648636	.	G	.	42.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.03:60:12
chr1	152648637	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152648638	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	152648639	.	C	.	.	LowGQX	END=152648645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152648646	.	C	.	.	LowGQX	END=152648649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	152648650	.	G	.	.	LowGQX	END=152648655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152648656	.	C	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	152648657	.	T	.	.	LowGQX	END=152648661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152648662	.	T	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	152648663	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152648664	.	C	.	.	LowGQX	END=152648666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152648667	.	G	.	.	LowGQX	END=152648676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	152648677	.	C	.	.	LowGQX	.	GT	./.
chr1	152648678	.	T	.	.	LowGQX	END=152648681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152648682	.	G	.	.	LowGQX	.	GT	./.
chr1	152648683	.	C	.	.	LowGQX	END=152648685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152648686	.	C	.	.	LowGQX	.	GT	./.
chr1	152648687	.	T	.	.	LowGQX	END=152648697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152648698	.	T	.	.	LowGQX	.	GT	./.
chr1	152648699	.	G	.	.	LowGQX	END=152648709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152648710	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152648711	.	A	.	.	LowGQX	END=152648715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152648716	.	C	.	.	LowGQX	.	GT	./.
chr1	152648717	.	C	.	.	LowGQX	END=152648718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152648719	.	C	.	.	LowGQX	.	GT	./.
chr1	152648720	.	A	.	.	LowGQX	END=152648721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152648722	.	G	.	.	LowGQX	.	GT	./.
chr1	152648723	.	C	.	.	LowGQX	END=152648724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152648725	.	C	.	.	LowGQX	.	GT	./.
chr1	152648726	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152648727	.	G	.	.	LowGQX	.	GT	./.
chr1	152648728	.	T	.	.	LowGQX	END=152648733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152648734	.	C	.	.	LowGQX	END=152648735	GT	./.
chr1	152648736	.	A	.	.	LowGQX	END=152648740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152648741	.	C	.	.	LowGQX	.	GT	./.
chr1	152648742	.	G	.	.	LowGQX	END=152648745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152648746	.	G	.	.	LowGQX	.	GT	./.
chr1	152648747	.	C	.	.	LowGQX	END=152648751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152648752	.	G	.	.	LowGQX	.	GT	./.
chr1	152648753	.	A	.	.	LowGQX	END=152648757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152648758	.	C	.	.	LowGQX	.	GT	./.
chr1	152648759	.	G	.	.	LowGQX	END=152648779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152648780	.	T	.	.	LowGQX	.	GT	./.
chr1	152648781	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152648782	.	T	.	.	LowGQX	END=152648783	GT	./.
chr1	152648784	.	G	.	.	LowGQX	END=152648785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152648786	.	G	.	.	LowGQX	END=152648826	GT	./.
chr1	152659318	.	G	.	.	PASS	END=152659348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:66:59
chr1	152659349	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:30:59
chr1	152659350	.	C	.	.	PASS	END=152659367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:59
chr1	152659368	.	C	.	.	PASS	END=152659400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	152659401	.	T	.	.	PASS	END=152659404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	152659405	.	C	.	.	PASS	END=152659416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	152659417	.	T	.	.	PASS	END=152659418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	152659419	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	152659420	.	C	.	.	PASS	END=152659423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	152659424	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	152659425	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	152659426	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	152659427	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	152659428	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	152659429	.	C	.	.	PASS	END=152659430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	152659431	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	152659432	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	152659433	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	152659434	.	C	.	.	PASS	END=152659437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	152659438	.	G	.	.	LowGQX	END=152659447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	152659448	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	152659449	.	G	.	.	LowGQX	END=152659450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	152659451	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	152659452	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	152659453	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	152659454	.	T	.	.	LowGQX	END=152659465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	152659466	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	152659467	.	C	.	.	LowGQX	END=152659469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	152659470	.	A	.	.	LowGQX	END=152659471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	152659472	.	C	.	.	LowGQX	END=152659475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	152659476	.	G	.	.	LowGQX	END=152659478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	152659479	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	152659480	.	G	.	.	LowGQX	END=152659505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	152659506	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	152659507	.	G	.	.	LowGQX	END=152659510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	152659511	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	152659512	.	A	.	.	LowGQX	END=152659514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:59
chr1	152659515	.	T	.	.	LowGQX	END=152659517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:59
chr1	152659518	.	G	.	.	LowGQX	END=152659519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:59
chr1	152659520	.	G	.	.	LowGQX	END=152659522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:59
chr1	152659523	.	T	.	.	LowGQX	END=152659525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:59
chr1	152659526	.	T	.	.	LowGQX	END=152659527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:59
chr1	152659528	.	G	.	.	LowGQX	END=152659530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:59
chr1	152659531	.	G	.	.	LowGQX	END=152659533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:59
chr1	152659534	.	G	.	.	LowGQX	END=152659535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:59
chr1	152659536	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:59
chr1	152659537	.	T	.	.	LowGQX	END=152659544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:59
chr1	152659545	.	C	.	.	LowGQX	END=152659547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:59
chr1	152659548	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:59
chr1	152659549	.	G	.	.	LowGQX	END=152659550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:59
chr1	152659551	.	C	.	.	LowGQX	END=152659553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:59
chr1	152659554	.	C	.	.	LowGQX	END=152659555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:59
chr1	152659556	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:59
chr1	152659557	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:59
chr1	152659558	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:59
chr1	152659559	.	C	.	.	LowGQX	END=152659563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:59
chr1	152659564	.	A	.	.	LowGQX	END=152659565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:59
chr1	152659566	.	C	.	.	LowGQX	END=152659569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:59
chr1	152659570	.	G	.	.	LowGQX	END=152659571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:59
chr1	152659572	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:59
chr1	152659573	.	G	.	.	LowGQX	END=152659577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:59
chr1	152659578	.	C	.	.	LowGQX	END=152659582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:59
chr1	152659583	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:21:59
chr1	152659584	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:59
chr1	152659585	.	C	.	.	LowGQX	END=152659594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:59
chr1	152659595	.	T	.	39.02	LowGQX	DP=8;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:8:9.03:59:9
chr1	152659596	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:59
chr1	152659597	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:59
chr1	152659598	.	G	.	.	LowGQX	END=152659600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:59
chr1	152659601	.	T	.	.	LowGQX	END=152659603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:59
chr1	152659604	.	A	.	.	LowGQX	END=152659605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:59
chr1	152659606	.	C	.	.	LowGQX	END=152659609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:59
chr1	152659610	.	T	.	.	LowGQX	END=152659611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:59
chr1	152659612	.	G	.	36.01	LowGQX	DP=5;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:59:6
chr1	152659613	.	G	.	.	LowGQX	END=152659621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:59
chr1	152659622	.	C	.	39.02	LowGQX	DP=5;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:59:9
chr1	152659623	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:58
chr1	152659624	.	G	.	39.02	LowGQX	DP=4;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:58:9
chr1	152659625	.	C	.	.	LowGQX	END=152659654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:58
chr1	152671376	.	A	.	.	PASS	END=152671397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	152671398	.	G	.	.	PASS	END=152671428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	152671429	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:64:66:60
chr1	152671430	.	C	.	.	PASS	END=152671464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	152671465	.	C	.	.	PASS	END=152671554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	152671555	.	T	.	.	PASS	END=152671608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	152671609	.	C	.	.	PASS	END=152671614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr1	152671615	.	C	.	.	PASS	END=152671617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:73:60
chr1	152671618	.	C	.	.	PASS	END=152671619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	152671620	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:66:60
chr1	152671621	.	C	.	.	PASS	END=152671628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	152671629	.	C	.	.	PASS	END=152671637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	152671638	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:63:60
chr1	152671639	.	T	.	.	PASS	END=152671640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	152671641	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:57:60
chr1	152671642	.	G	.	.	PASS	END=152671646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	152671647	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:69:60
chr1	152671648	.	G	.	.	PASS	END=152671653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	152671654	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:69:60
chr1	152671655	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:48:60
chr1	152671656	.	T	.	.	PASS	END=152671661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	152671662	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:99:60
chr1	152671663	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:69:60
chr1	152671664	.	C	.	.	PASS	END=152671671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	152671672	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:66:60
chr1	152671673	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:90:60
chr1	152671674	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:51:60
chr1	152671675	.	C	.	.	PASS	END=152671687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	152671688	.	A	.	.	PASS	END=152671695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	152671696	.	T	.	.	PASS	END=152671700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:59
chr1	152681550	.	A	.	.	PASS	END=152681555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	152681556	.	C	.	.	PASS	END=152681560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	152681561	.	C	.	.	PASS	END=152681566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	152681567	.	A	.	.	PASS	END=152681582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	152681583	.	A	.	.	PASS	END=152681587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:60
chr1	152681588	.	C	.	.	PASS	END=152681598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	152681599	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chr1	152681600	.	C	.	.	PASS	END=152681625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	152681626	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:42:60
chr1	152681627	.	C	.	.	PASS	END=152681642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:51:60
chr1	152681643	.	C	.	.	PASS	END=152681689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	152681690	.	G	.	.	PASS	END=152681692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	152681693	.	T	.	.	PASS	END=152681695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:60
chr1	152681696	.	G	.	.	PASS	END=152681706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	152681707	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:24:60
chr1	152681708	.	T	.	.	PASS	END=152681714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	152681715	.	G	.	.	PASS	END=152681746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	152681747	.	C	.	.	PASS	END=152681753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	152681754	.	C	.	.	PASS	END=152681756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	152681757	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	152681758	.	C	.	.	PASS	END=152681771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	152681772	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	152681773	.	G	.	.	PASS	END=152681774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	152681775	.	G	.	.	LowGQX	END=152681788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	152681789	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	152681790	.	G	.	.	LowGQX	END=152681797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	152681798	.	A	.	.	LowGQX	END=152681824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	152681825	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	152681826	.	G	.	.	LowGQX	END=152681830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152681831	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:3:60
chr1	152681832	.	C	.	6.75	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.02:60:0
chr1	152681833	.	T	.	.	LowGQX	END=152681837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152681838	.	G	.	.	LowGQX	END=152681839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	152681840	.	G	.	.	LowGQX	END=152681847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152681848	.	C	.	.	LowGQX	END=152681853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152691997	.	A	.	.	LowGQX	END=152692068	GT	./.
chr1	152692069	.	G	.	.	LowGQX	END=152692110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152692111	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152692112	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152692113	.	C	.	.	LowGQX	END=152692114	GT	./.
chr1	152692115	.	C	.	.	LowGQX	END=152692116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152692117	.	A	.	.	LowGQX	END=152692118	GT	./.
chr1	152692119	.	C	.	.	LowGQX	END=152692133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152692134	.	G	.	.	LowGQX	.	GT	./.
chr1	152692135	.	C	.	.	LowGQX	END=152692156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152692157	.	A	.	.	LowGQX	END=152692158	GT	./.
chr1	152692159	.	T	.	.	LowGQX	END=152692166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152692167	.	A	.	.	LowGQX	.	GT	./.
chr1	152692168	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152692169	.	T	.	.	LowGQX	END=152692170	GT	./.
chr1	152692171	.	C	.	.	LowGQX	END=152692172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152692173	.	A	.	.	LowGQX	.	GT	./.
chr1	152692174	.	A	.	.	LowGQX	END=152692175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152692176	.	T	.	.	LowGQX	END=152692177	GT	./.
chr1	152692178	.	C	.	.	LowGQX	END=152692186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152692187	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152692188	.	C	.	.	LowGQX	END=152692192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152692193	.	A	.	.	LowGQX	.	GT	./.
chr1	152692194	.	C	.	.	LowGQX	END=152692197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152692198	.	C	.	.	LowGQX	.	GT	./.
chr1	152692199	.	G	.	.	LowGQX	END=152692259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152692260	.	A	.	.	LowGQX	END=152692750	GT	./.
chr1	152732063	.	C	.	.	LowGQX	END=152732070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152732071	.	G	.	.	LowGQX	.	GT	./.
chr1	152732072	.	A	.	.	LowGQX	END=152732073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152732074	.	C	.	.	LowGQX	END=152732791	GT	./.
chr1	152732792	.	T	.	.	LowGQX	END=152732868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152732869	.	T	.	.	LowGQX	.	GT	./.
chr1	152732870	.	G	.	.	LowGQX	END=152732876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152732877	.	A	.	.	LowGQX	.	GT	./.
chr1	152732878	.	C	.	.	LowGQX	END=152732882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152732883	.	A	.	.	LowGQX	.	GT	./.
chr1	152732884	.	C	.	.	LowGQX	END=152732890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152732891	.	A	.	.	LowGQX	.	GT	./.
chr1	152732892	.	G	.	.	LowGQX	END=152732908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152732909	.	A	.	.	LowGQX	.	GT	./.
chr1	152732910	.	C	.	.	LowGQX	END=152732915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152732916	.	A	.	.	LowGQX	.	GT	./.
chr1	152732917	.	C	.	.	LowGQX	END=152732921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152732922	.	A	.	.	LowGQX	.	GT	./.
chr1	152732923	.	C	.	.	LowGQX	END=152732929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152732930	.	A	.	.	LowGQX	.	GT	./.
chr1	152732931	.	A	.	.	LowGQX	END=152732936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152732937	.	C	.	.	LowGQX	.	GT	./.
chr1	152732938	.	C	.	.	LowGQX	END=152732940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152732941	.	A	.	.	LowGQX	.	GT	./.
chr1	152732942	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152732943	.	C	.	.	LowGQX	END=152733016	GT	./.
chr1	152733017	.	C	.	.	LowGQX	END=152733019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152733020	.	A	.	.	LowGQX	.	GT	./.
chr1	152733021	.	G	.	.	LowGQX	END=152733027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152733028	.	G	.	.	LowGQX	.	GT	./.
chr1	152733029	.	G	.	.	LowGQX	END=152733034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152733035	.	A	.	.	LowGQX	.	GT	./.
chr1	152733036	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152733037	.	T	.	.	LowGQX	.	GT	./.
chr1	152733038	.	G	.	.	LowGQX	END=152733043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152733044	.	T	.	.	LowGQX	.	GT	./.
chr1	152733045	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152733046	.	G	.	.	LowGQX	.	GT	./.
chr1	152733047	.	A	.	.	LowGQX	END=152733049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152733050	.	T	.	.	LowGQX	.	GT	./.
chr1	152733051	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152733052	.	T	.	.	LowGQX	.	GT	./.
chr1	152733053	.	C	.	.	LowGQX	END=152733063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152733064	.	T	.	.	LowGQX	.	GT	./.
chr1	152733065	.	G	.	.	LowGQX	END=152733069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152733070	.	A	.	.	LowGQX	END=152733071	GT	./.
chr1	152733072	.	G	.	.	LowGQX	END=152733076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152733077	.	T	.	.	LowGQX	END=152733078	GT	./.
chr1	152733079	.	C	.	.	LowGQX	END=152733090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152733091	.	T	.	.	LowGQX	.	GT	./.
chr1	152733092	.	G	.	.	LowGQX	END=152733095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152733096	.	T	.	.	LowGQX	.	GT	./.
chr1	152733097	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152733098	.	T	.	.	LowGQX	END=152733100	GT	./.
chr1	152733101	.	A	.	.	LowGQX	END=152733102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152733103	.	A	.	.	LowGQX	.	GT	./.
chr1	152733104	.	T	.	.	LowGQX	END=152733107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152733108	.	T	.	.	LowGQX	.	GT	./.
chr1	152733109	.	C	.	.	LowGQX	END=152733116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152733117	.	A	.	.	LowGQX	.	GT	./.
chr1	152733118	.	C	.	.	LowGQX	END=152733129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152733130	.	A	.	.	LowGQX	.	GT	./.
chr1	152733131	.	G	.	.	LowGQX	END=152733167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152733168	.	T	.	.	LowGQX	END=152733806	GT	./.
chr1	152748846	.	A	.	.	PASS	END=152748867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	152748868	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	152748869	.	C	.	.	PASS	END=152748875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	152748876	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	152748877	.	C	.	.	PASS	END=152748878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	152748879	.	A	.	.	LowGQX	END=152748884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	152748885	.	C	.	.	LowGQX	END=152748889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	152748890	.	A	.	45.04	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:15.05:60:15
chr1	152748891	.	A	.	.	LowGQX	END=152748892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	152748893	.	T	.	.	LowGQX	END=152748895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	152748896	.	A	.	45.04	LowGQX	DP=8;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:8:15.05:60:15
chr1	152748897	.	C	.	.	LowGQX	END=152748901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	152748902	.	A	.	45.04	LowGQX	DP=7;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:7:15.05:60:15
chr1	152748903	.	A	.	.	LowGQX	END=152748927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152748928	.	G	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	152748929	.	A	.	.	LowGQX	END=152748930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	152748931	.	G	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	152748932	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	152748933	.	G	.	.	LowGQX	END=152748937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	152748938	.	C	.	20.88	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.50:60:1
chr1	152748939	.	C	.	.	LowGQX	END=152748942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	152748943	.	G	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	152748944	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	152748945	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	152748946	.	T	.	.	LowGQX	END=152748950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	152748951	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152748952	.	T	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	152748953	.	A	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	152748954	.	A	.	.	LowGQX	END=152748955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	152748956	.	T	.	.	LowGQX	END=152748957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:60
chr1	152748958	.	C	.	.	LowGQX	END=152748960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	152748961	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	152748962	.	C	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	152748963	.	C	.	.	LowGQX	END=152748965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	152748966	.	T	.	.	LowGQX	END=152748969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	152748970	.	T	.	.	LowGQX	END=152748974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	152748975	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	152748976	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:60
chr1	152748977	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr1	152748978	.	G	.	.	LowGQX	END=152748979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	152748980	.	A	.	.	LowGQX	END=152748983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	152748984	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr1	152748985	.	C	.	.	LowGQX	END=152748988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	152748989	.	T	.	.	LowGQX	END=152748990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	152748991	.	C	.	.	LowGQX	END=152748997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152748998	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	152748999	.	G	.	.	LowGQX	END=152749000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152749001	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	152749002	.	G	.	.	LowGQX	END=152749006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	152749007	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr1	152749008	.	C	.	.	LowGQX	END=152749011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	152749012	.	C	.	.	LowGQX	END=152749014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	152749015	.	T	.	.	LowGQX	END=152749021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	152749022	.	T	.	.	LowGQX	END=152749023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	152749024	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	152749025	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	152749026	.	G	.	.	LowGQX	END=152749028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	152749029	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	152749030	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	152749031	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	152749032	.	C	.	.	LowGQX	END=152749034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	152749035	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	152749036	.	G	.	.	LowGQX	END=152749037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	152749038	.	G	.	.	LowGQX	END=152749041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152749042	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	152749043	.	G	.	.	LowGQX	END=152749051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152749052	.	A	.	.	LowGQX	END=152749053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	152749054	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	152749055	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	152749056	.	C	.	.	LowGQX	END=152749068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	152749069	.	C	.	.	LowGQX	END=152749094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	152749095	.	G	.	.	LowGQX	END=152749102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	152749103	.	C	.	.	LowGQX	END=152749132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152749133	.	T	.	.	LowGQX	.	GT	./.
chr1	152749134	.	G	.	.	LowGQX	END=152749151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152749152	.	G	.	.	LowGQX	END=152749206	GT	./.
chr1	152759774	.	A	.	.	PASS	END=152759834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	152759835	.	C	.	.	PASS	END=152759840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	152759841	.	C	.	.	LowGQX	END=152759844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	152759845	.	T	.	.	LowGQX	END=152759846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	152759847	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:60
chr1	152759848	.	C	.	.	LowGQX	END=152759851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152759852	.	C	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	152759853	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	152759854	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	152759855	.	C	.	.	LowGQX	END=152759861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	152759862	.	C	A	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.05;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.29:30,0,62:60:3:0.333
chr1	152759863	.	C	.	.	LowGQX	END=152759876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	152759877	.	C	.	.	LowGQX	END=152759886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152759887	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	152759888	.	C	.	.	LowGQX	END=152759904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152759905	.	T	.	.	LowGQX	END=152759906	GT	./.
chr1	152759907	.	C	.	.	LowGQX	END=152759909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152759910	.	T	.	.	LowGQX	.	GT	./.
chr1	152759911	.	G	.	.	LowGQX	END=152759921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152759922	.	A	.	.	LowGQX	END=152759926	GT	./.
chr1	152759927	.	G	.	.	LowGQX	END=152759946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152759947	.	G	.	.	LowGQX	.	GT	./.
chr1	152759948	.	G	.	.	LowGQX	END=152760031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152760032	.	A	.	.	LowGQX	.	GT	./.
chr1	152760033	.	C	.	.	LowGQX	END=152760134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152770258	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:69:60
chr1	152770259	.	C	.	.	PASS	END=152770312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:58
chr1	152770313	.	A	.	.	PASS	END=152770317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr1	152770318	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:30:60
chr1	152770319	.	A	.	.	PASS	END=152770324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	152770325	.	A	.	.	PASS	END=152770330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	152770331	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:48:60
chr1	152770332	.	C	.	.	PASS	END=152770340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:59
chr1	152770341	.	G	.	.	PASS	END=152770346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:59
chr1	152770347	.	C	.	.	PASS	END=152770356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:59
chr1	152770357	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:60
chr1	152770358	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	152770359	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	152770360	.	C	.	.	PASS	END=152770361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	152770362	.	C	.	.	LowGQX	END=152770366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	152770367	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	152770368	.	G	.	.	LowGQX	END=152770369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	152770370	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	152770371	.	C	.	.	LowGQX	END=152770374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	152770375	.	A	.	.	LowGQX	END=152770385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	152770386	.	G	.	.	LowGQX	END=152770389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	152770390	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	152770391	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	152770392	.	G	.	.	LowGQX	END=152770393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	152770394	.	G	.	.	LowGQX	END=152770408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	152770409	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	152770410	.	G	.	.	LowGQX	END=152770414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152770415	.	G	.	.	LowGQX	END=152770416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152770417	.	C	.	.	LowGQX	.	GT	./.
chr1	152770418	.	T	.	.	LowGQX	END=152770422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152770423	.	C	.	.	LowGQX	END=152770438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152770439	.	G	.	.	LowGQX	END=152770441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152770442	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	152770443	.	C	.	.	LowGQX	END=152770446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152770447	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	152770448	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	152770449	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	152770450	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	152770451	.	G	.	.	LowGQX	END=152770452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	152770453	.	G	.	.	LowGQX	END=152770454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	152770455	.	G	.	.	LowGQX	END=152770456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	152770457	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	152770458	.	G	.	.	LowGQX	END=152770464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	152770465	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr1	152770466	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	152770467	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:60
chr1	152770468	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	152770469	.	G	.	.	LowGQX	END=152770473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	152770474	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	152770475	.	G	.	.	LowGQX	END=152770476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	152770477	.	T	.	45.04	LowGQX	DP=8;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:8:15.05:60:15
chr1	152770478	.	G	.	.	LowGQX	END=152770480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	152770481	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	152770482	.	G	.	.	LowGQX	END=152770483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	152770484	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:60
chr1	152770485	.	G	.	.	LowGQX	END=152770487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	152770488	.	T	.	.	LowGQX	END=152770490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	152770491	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	152770492	.	C	.	.	LowGQX	END=152770502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	152770503	.	G	.	.	LowGQX	END=152770508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	152770509	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	152770510	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	152770511	.	T	.	36.01	LowGQX	DP=7;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:7:6.02:60:6
chr1	152770512	.	C	.	.	LowGQX	END=152770518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	152770519	.	T	.	13.53	LowGQX	DP=7;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:7:0.09:60:0
chr1	152770520	.	C	.	.	LowGQX	END=152770521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	152770522	.	C	.	.	LowGQX	END=152770525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	152770526	.	C	.	.	LowGQX	END=152770529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	152770530	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	152770531	.	G	.	.	LowGQX	END=152770534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	152770535	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	152770536	.	C	.	.	LowGQX	END=152770543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	152770544	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	152770545	.	G	.	.	LowGQX	END=152770555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	152770556	.	T	.	.	LowGQX	END=152770557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	152770558	.	G	.	.	LowGQX	END=152770564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	152770565	.	T	.	.	LowGQX	END=152770566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	152770567	.	C	.	.	LowGQX	END=152770573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	152770574	.	T	.	.	LowGQX	END=152770591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	152770592	.	C	.	.	LowGQX	END=152770605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	152770606	.	C	.	.	LowGQX	END=152770617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	152777596	.	C	.	.	LowGQX	END=152777638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152777639	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152777640	.	G	.	.	LowGQX	END=152777655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152777656	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152777657	.	A	.	.	LowGQX	END=152777697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152777698	.	T	.	.	LowGQX	.	GT	./.
chr1	152777699	.	G	.	.	LowGQX	END=152777704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152777705	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152777706	.	A	.	.	LowGQX	END=152777707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152777708	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152777709	.	G	.	.	LowGQX	END=152777713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152777714	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152777715	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152777716	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	152777717	.	G	.	.	LowGQX	END=152777719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152777720	.	G	.	.	LowGQX	END=152777722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	152777723	.	T	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	152777724	.	C	.	.	LowGQX	END=152777727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	152777728	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	152777729	.	A	.	.	LowGQX	END=152777745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152777746	.	G	.	.	LowGQX	END=152777759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	152777760	.	C	.	.	LowGQX	END=152777767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152777768	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	152777769	.	G	.	.	LowGQX	END=152777780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	152777781	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	152777782	.	C	.	.	LowGQX	END=152777787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	152777788	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	152777789	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	152777790	.	G	.	.	LowGQX	END=152777805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152777806	.	C	.	.	LowGQX	END=152777812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	152777813	.	A	.	.	LowGQX	END=152777821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	152777822	.	T	.	.	LowGQX	END=152777825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	152777826	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:60
chr1	152777827	.	C	.	.	LowGQX	END=152777829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	152777830	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	152777831	.	A	.	.	LowGQX	END=152777835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	152777836	.	A	.	.	LowGQX	END=152777845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	152777846	.	A	.	.	LowGQX	END=152777849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	152777850	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	152777851	.	G	.	.	LowGQX	END=152777852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	152777853	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	152777854	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:1:60
chr1	152777855	.	G	.	.	LowGQX	END=152777858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	152777859	.	C	.	.	LowGQX	END=152777860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	152777861	.	T	.	.	LowGQX	END=152777864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	152777865	.	G	.	.	LowGQX	END=152777869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	152777870	.	A	.	.	LowGQX	END=152777871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	152777872	.	T	.	.	LowGQX	END=152777876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	152777877	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	152777878	.	G	.	.	LowGQX	END=152777883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	152777884	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	152777885	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	152777886	.	C	.	.	LowGQX	END=152777887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	152777888	.	T	.	.	LowGQX	END=152777890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:60
chr1	152777891	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	152777892	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	152777893	.	G	.	.	PASS	END=152777895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	152777896	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	152777897	.	A	.	.	PASS	END=152777901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	152777902	.	G	.	.	PASS	END=152777905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	152777906	.	T	.	.	PASS	END=152777920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	152777921	.	G	.	.	PASS	END=152777933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:60
chr1	152777934	.	C	.	.	PASS	END=152777956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:39:60
chr1	152784921	.	A	.	.	PASS	END=152784959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	152784960	.	C	.	.	PASS	END=152784964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:51:60
chr1	152784965	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:25:60
chr1	152784966	.	A	.	.	PASS	END=152784968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:42:60
chr1	152784969	.	G	.	.	PASS	END=152784970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	152784971	.	A	.	.	PASS	END=152784976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	152784977	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:6:60
chr1	152784978	.	A	.	.	PASS	END=152784989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	152784990	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:48:60
chr1	152784991	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:3:60
chr1	152784992	.	T	.	.	PASS	END=152784994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	152784995	.	C	.	.	PASS	END=152784998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	152784999	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	152785000	.	C	.	.	PASS	END=152785002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	152785003	.	T	.	.	LowGQX	END=152785004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	152785005	.	G	.	.	PASS	END=152785006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	152785007	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	152785008	.	G	.	.	LowGQX	END=152785016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	152785017	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	152785018	.	G	.	.	LowGQX	END=152785020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	152785021	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	152785022	.	C	.	.	LowGQX	END=152785024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	152785025	.	C	.	.	LowGQX	END=152785030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	152785031	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	152785032	.	G	.	.	LowGQX	END=152785033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:59
chr1	152785034	.	C	.	.	LowGQX	END=152785037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:59
chr1	152785038	.	C	.	.	LowGQX	END=152785040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:59
chr1	152785041	.	T	.	48.04	LowGQX	DP=8;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:8:18.05:59:18
chr1	152785042	.	C	.	.	LowGQX	END=152785044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:59
chr1	152785045	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:59
chr1	152785046	.	T	.	.	LowGQX	END=152785051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:58
chr1	152785052	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:1:58
chr1	152785053	.	G	.	.	LowGQX	END=152785056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:58
chr1	152785057	.	T	.	.	LowGQX	END=152785058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:58
chr1	152785059	.	T	.	39.02	LowGQX	DP=9;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:9.03:58:9
chr1	152785060	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:27:58
chr1	152785061	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:58
chr1	152785062	.	G	.	.	LowGQX	END=152785072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:58
chr1	152785073	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:58
chr1	152785074	.	G	.	.	LowGQX	END=152785081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:58
chr1	152785082	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:58
chr1	152785083	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:58
chr1	152785084	.	C	.	.	PASS	END=152785085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:58
chr1	152785086	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:58
chr1	152785087	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:58
chr1	152785088	.	T	.	.	LowGQX	END=152785089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:58
chr1	152785090	.	T	.	25.38	LowGQX	DP=10;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:1.29:58:1
chr1	152785091	.	G	.	.	LowGQX	END=152785092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:58
chr1	152785093	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:58
chr1	152785094	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:21:58
chr1	152785095	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:58
chr1	152785096	.	A	.	.	LowGQX	END=152785101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:58
chr1	152785102	.	T	G	11.12	LowGQX;LowQD;SB	BaseQRankSum=-0.067;DP=9;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=2.8408;MQ=58;MQ0=0;MQRankSum=-0.762;QD=1.24;ReadPosRankSum=-0.762;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:7,2:9:40.76:41,0,160:58:11:0.222
chr1	152785103	.	G	.	.	LowGQX	END=152785114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:58
chr1	152785115	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:58
chr1	152785116	.	G	.	.	LowGQX	END=152785117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:58
chr1	152785118	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:58
chr1	152785119	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:58
chr1	152785120	.	T	.	42.02	LowGQX	DP=9;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:9:12.03:58:12
chr1	152785121	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:58
chr1	152785122	.	G	.	.	LowGQX	END=152785123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:58
chr1	152785124	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:58
chr1	152785125	.	G	.	.	LowGQX	END=152785128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:58
chr1	152785129	.	T	.	.	LowGQX	END=152785130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:58
chr1	152785131	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:58
chr1	152785132	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:58
chr1	152785133	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:27:58
chr1	152785134	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:58
chr1	152785135	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:58
chr1	152785136	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:58
chr1	152785137	.	G	.	.	LowGQX	END=152785140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:58
chr1	152785141	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:58
chr1	152785142	.	G	.	.	LowGQX	END=152785147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:58
chr1	152785148	.	T	.	.	LowGQX	END=152785149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:58
chr1	152785150	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:58
chr1	152785151	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:58
chr1	152785152	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:57
chr1	152785153	.	G	.	.	LowGQX	END=152785156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:57
chr1	152785157	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:57
chr1	152785158	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:57
chr1	152785159	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:57
chr1	152785160	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:57
chr1	152785161	.	A	.	.	LowGQX	END=152785170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:57
chr1	152785171	.	T	.	.	LowGQX	END=152785174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:57
chr1	152785175	.	T	.	.	LowGQX	END=152785176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:56
chr1	152785177	.	C	.	.	LowGQX	END=152785185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:57
chr1	152785186	.	C	.	4.58	LowGQX	DP=4;MQ=57;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.01:57:0
chr1	152785187	.	A	.	.	LowGQX	END=152785196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:57
chr1	152785197	.	G	.	.	LowGQX	END=152785224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152785225	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	152785226	.	G	.	.	LowGQX	END=152785228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152785229	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	152785230	.	C	.	.	LowGQX	END=152785281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152799947	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	152799948	.	G	.	.	LowGQX	END=152799950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	152799951	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	152799952	.	T	.	.	LowGQX	END=152799953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	152799954	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	152799955	.	T	.	.	LowGQX	END=152799956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	152799957	.	C	.	.	PASS	END=152799958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	152799959	.	A	.	.	LowGQX	END=152799960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	152799961	.	C	.	.	PASS	END=152799963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	152799964	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	152799965	.	G	.	.	PASS	END=152799967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	152799968	.	A	.	.	LowGQX	END=152799979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	152799980	.	A	.	.	LowGQX	END=152799984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	152799985	.	C	.	.	LowGQX	END=152799993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	152799994	.	T	.	.	LowGQX	END=152800008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	152800009	.	C	.	.	LowGQX	END=152800017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152800018	.	T	.	.	LowGQX	END=152800026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	152800027	.	C	.	.	LowGQX	END=152800030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152800031	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	152800032	.	G	.	.	LowGQX	END=152800036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152800037	.	C	.	.	LowGQX	END=152800042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	152800043	.	A	.	.	LowGQX	END=152800047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	152800048	.	C	.	.	LowGQX	END=152800054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	152800055	.	A	.	.	LowGQX	END=152800084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152800085	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	152800086	.	C	.	.	LowGQX	END=152800131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152800132	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	152800133	.	C	.	.	LowGQX	END=152800167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	152800168	.	C	.	.	LowGQX	END=152800189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	152800190	.	G	.	.	LowGQX	END=152800220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152800221	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	152800222	.	T	.	.	LowGQX	END=152800262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152800263	.	C	.	.	LowGQX	END=152800283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	152815996	.	A	.	.	LowGQX	END=152816239	GT	./.
chr1	152856897	.	A	.	.	LowGQX	END=152857001	GT	./.
chr1	152857002	.	G	.	.	LowGQX	END=152857036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152857037	.	G	.	.	LowGQX	.	GT	./.
chr1	152857038	.	G	.	.	LowGQX	END=152857039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152857040	.	A	.	.	LowGQX	END=152857041	GT	./.
chr1	152857042	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152857043	.	C	.	.	LowGQX	END=152857044	GT	./.
chr1	152857045	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152857046	.	T	.	.	LowGQX	END=152857047	GT	./.
chr1	152857048	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152857049	.	T	.	.	LowGQX	.	GT	./.
chr1	152857050	.	G	.	.	LowGQX	END=152857053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152857054	.	A	.	.	LowGQX	.	GT	./.
chr1	152857055	.	C	.	.	LowGQX	END=152857056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152857057	.	A	.	.	LowGQX	.	GT	./.
chr1	152857058	.	A	.	.	LowGQX	END=152857061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152857062	.	A	.	.	LowGQX	.	GT	./.
chr1	152857063	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152857064	.	A	.	.	LowGQX	.	GT	./.
chr1	152857065	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152857066	.	T	.	.	LowGQX	END=152857068	GT	./.
chr1	152857069	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152857070	.	T	.	.	LowGQX	.	GT	./.
chr1	152857071	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152857072	.	C	.	.	LowGQX	END=152857073	GT	./.
chr1	152857074	.	G	.	.	LowGQX	END=152857076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152857077	.	A	.	.	LowGQX	END=152857079	GT	./.
chr1	152857080	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152857081	.	A	.	.	LowGQX	.	GT	./.
chr1	152857082	.	A	.	.	LowGQX	END=152857090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152857091	.	T	.	.	LowGQX	.	GT	./.
chr1	152857092	.	G	.	.	LowGQX	END=152857116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152857117	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152857118	.	T	.	.	LowGQX	END=152857136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152857137	.	T	.	.	LowGQX	.	GT	./.
chr1	152857138	.	C	.	.	LowGQX	END=152857156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152857157	.	T	.	.	LowGQX	.	GT	./.
chr1	152857158	.	C	.	.	LowGQX	END=152857234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152857235	.	A	.	.	LowGQX	END=152857251	GT	./.
chr1	152882272	.	A	.	.	LowGQX	END=152882411	GT	./.
chr1	152882412	.	G	.	.	LowGQX	END=152882413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882414	.	G	.	.	LowGQX	.	GT	./.
chr1	152882415	.	C	.	.	LowGQX	END=152882419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882420	.	C	.	.	LowGQX	.	GT	./.
chr1	152882421	.	G	.	.	LowGQX	END=152882422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882423	.	G	.	.	LowGQX	.	GT	./.
chr1	152882424	.	C	.	.	LowGQX	END=152882427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882428	.	C	.	.	LowGQX	END=152882429	GT	./.
chr1	152882430	.	G	.	.	LowGQX	END=152882433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882434	.	A	.	.	LowGQX	.	GT	./.
chr1	152882435	.	G	.	.	LowGQX	END=152882438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882439	.	C	.	.	LowGQX	.	GT	./.
chr1	152882440	.	C	.	.	LowGQX	END=152882444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882445	.	A	.	.	LowGQX	.	GT	./.
chr1	152882446	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882447	.	G	.	.	LowGQX	.	GT	./.
chr1	152882448	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882449	.	A	.	.	LowGQX	.	GT	./.
chr1	152882450	.	A	.	.	LowGQX	END=152882451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882452	.	A	.	.	LowGQX	.	GT	./.
chr1	152882453	.	G	.	.	LowGQX	END=152882455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882456	.	A	.	.	LowGQX	.	GT	./.
chr1	152882457	.	A	.	.	LowGQX	END=152882459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882460	.	C	.	.	LowGQX	END=152882463	GT	./.
chr1	152882464	.	T	.	.	LowGQX	END=152882467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882468	.	T	.	.	LowGQX	.	GT	./.
chr1	152882469	.	G	.	.	LowGQX	END=152882470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882471	.	T	.	.	LowGQX	.	GT	./.
chr1	152882472	.	G	.	.	LowGQX	END=152882474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882475	.	A	.	.	LowGQX	END=152882476	GT	./.
chr1	152882477	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882478	.	G	.	.	LowGQX	.	GT	./.
chr1	152882479	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882480	.	A	.	.	LowGQX	.	GT	./.
chr1	152882481	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882482	.	T	.	.	LowGQX	.	GT	./.
chr1	152882483	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882484	.	C	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	152882485	.	C	.	.	LowGQX	END=152882486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882487	.	G	.	.	LowGQX	END=152882488	GT	./.
chr1	152882489	.	G	.	.	LowGQX	END=152882492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882493	.	G	.	.	LowGQX	.	GT	./.
chr1	152882494	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882495	.	A	.	.	LowGQX	.	GT	./.
chr1	152882496	.	T	.	.	LowGQX	END=152882499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882500	.	A	.	.	LowGQX	.	GT	./.
chr1	152882501	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882502	.	C	.	.	LowGQX	.	GT	./.
chr1	152882503	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882504	.	A	.	.	LowGQX	.	GT	./.
chr1	152882505	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882506	.	A	.	.	LowGQX	.	GT	./.
chr1	152882507	.	G	.	.	LowGQX	END=152882509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882510	.	G	.	.	LowGQX	END=152882511	GT	./.
chr1	152882512	.	A	.	.	LowGQX	END=152882515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882516	.	G	.	.	LowGQX	.	GT	./.
chr1	152882517	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882518	.	C	.	.	LowGQX	END=152882519	GT	./.
chr1	152882520	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882521	.	A	.	.	LowGQX	END=152882522	GT	./.
chr1	152882523	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882524	.	A	.	.	LowGQX	END=152882526	GT	./.
chr1	152882527	.	A	.	.	LowGQX	END=152882532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882533	.	T	.	.	LowGQX	.	GT	./.
chr1	152882534	.	G	.	.	LowGQX	END=152882535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882536	.	A	.	.	LowGQX	.	GT	./.
chr1	152882537	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882538	.	C	.	.	LowGQX	END=152882540	GT	./.
chr1	152882541	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882542	.	A	.	.	LowGQX	END=152882543	GT	./.
chr1	152882544	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882545	.	A	.	.	LowGQX	END=152882547	GT	./.
chr1	152882548	.	G	.	.	LowGQX	END=152882550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882551	.	A	.	.	LowGQX	END=152882553	GT	./.
chr1	152882554	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882555	.	G	.	.	LowGQX	END=152882558	GT	./.
chr1	152882559	.	G	.	.	LowGQX	END=152882561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882562	.	G	.	.	LowGQX	END=152882756	GT	./.
chr1	152882757	.	C	.	.	LowGQX	END=152882760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882761	.	T	.	.	LowGQX	.	GT	./.
chr1	152882762	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882763	.	A	.	.	LowGQX	END=152882764	GT	./.
chr1	152882765	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882766	.	C	.	.	LowGQX	.	GT	./.
chr1	152882767	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882768	.	C	.	.	LowGQX	END=152882769	GT	./.
chr1	152882770	.	T	.	.	LowGQX	END=152882771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882772	.	G	.	.	LowGQX	END=152882774	GT	./.
chr1	152882775	.	C	.	.	LowGQX	END=152882776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882777	.	G	.	.	LowGQX	END=152882780	GT	./.
chr1	152882781	.	G	.	.	LowGQX	END=152882784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882785	.	G	.	.	LowGQX	.	GT	./.
chr1	152882786	.	A	.	.	LowGQX	END=152882789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882790	.	C	.	.	LowGQX	END=152882794	GT	./.
chr1	152882795	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882796	.	C	.	.	LowGQX	.	GT	./.
chr1	152882797	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882798	.	C	.	.	LowGQX	END=152882806	GT	./.
chr1	152882807	.	G	.	.	LowGQX	END=152882809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882810	.	G	.	.	LowGQX	END=152882812	GT	./.
chr1	152882813	.	G	.	.	LowGQX	END=152882815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882816	.	G	.	.	LowGQX	.	GT	./.
chr1	152882817	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882818	.	A	.	.	LowGQX	.	GT	./.
chr1	152882819	.	G	.	.	LowGQX	END=152882823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882824	.	A	.	.	LowGQX	.	GT	./.
chr1	152882825	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152882826	.	C	.	.	LowGQX	.	GT	./.
chr1	152882827	.	T	.	.	LowGQX	END=152882836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:48
chr1	152882837	.	G	.	33	LowGQX	DP=2;MQ=48;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:48:3
chr1	152882838	.	C	.	.	LowGQX	END=152882858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:48
chr1	152882859	.	C	.	.	LowGQX	.	GT	./.
chr1	152882860	.	C	.	.	LowGQX	END=152882875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:40
chr1	152882876	.	G	.	.	LowGQX	.	GT	./.
chr1	152882877	.	C	.	.	LowGQX	END=152882880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:40
chr1	152882881	.	T	.	.	LowGQX	.	GT	./.
chr1	152882882	.	G	.	.	LowGQX	END=152882885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:40
chr1	152882886	.	C	.	33	LowGQX	DP=3;MQ=40;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:40:3
chr1	152882887	.	T	.	.	LowGQX	END=152882889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:38
chr1	152882890	.	C	.	36.01	LowGQX	DP=4;MQ=38;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:38:6
chr1	152882891	.	A	.	.	LowGQX	END=152882892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:38
chr1	152882893	.	A	.	36	LowGQX	DP=4;MQ=38;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.01:38:6
chr1	152882894	.	G	.	.	LowGQX	END=152882905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:38
chr1	152882906	.	G	.	.	LowGQX	END=152882907	GT	./.
chr1	152882908	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:27
chr1	152882909	.	G	.	.	LowGQX	.	GT	./.
chr1	152882910	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:27
chr1	152882911	.	T	.	33	LowGQX	DP=3;MQ=27;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:27:3
chr1	152882912	.	G	.	.	LowGQX	END=152882914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:27
chr1	152882915	.	G	.	.	LowGQX	.	GT	./.
chr1	152882916	.	C	.	33	LowGQX	DP=3;MQ=27;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:27:3
chr1	152882917	.	T	.	.	LowGQX	.	GT	./.
chr1	152882918	.	C	.	.	LowGQX	END=152882926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:27
chr1	152882927	.	G	.	32.98	LowGQX	DP=3;MQ=27;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3:27:3
chr1	152882928	.	C	.	.	LowGQX	.	GT	./.
chr1	152882929	.	A	.	.	LowGQX	END=152882931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:27
chr1	152882932	.	A	.	.	LowGQX	.	GT	./.
chr1	152882933	.	G	.	.	LowGQX	END=152882935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:27
chr1	152882936	.	G	.	.	LowGQX	.	GT	./.
chr1	152882937	.	C	.	.	LowGQX	END=152882942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:27
chr1	152882943	.	G	.	33	LowGQX	DP=3;MQ=27;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:27:3
chr1	152882944	.	A	.	.	LowGQX	END=152882945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:27
chr1	152882946	.	C	.	32.99	LowGQX	DP=4;MQ=26;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3:26:3
chr1	152882947	.	T	.	32.99	LowGQX	DP=4;MQ=26;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3:26:3
chr1	152882948	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:26
chr1	152882949	.	C	.	36	LowGQX	DP=4;MQ=26;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.01:26:6
chr1	152882950	.	C	.	32.99	LowGQX	DP=4;MQ=26;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3:26:3
chr1	152882951	.	A	.	.	LowGQX	END=152882956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:26
chr1	152882957	.	G	.	9.81	LowGQX	DP=4;MQ=26;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.04:26:0
chr1	152882958	.	C	.	32.99	LowGQX	DP=4;MQ=26;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3:26:3
chr1	152882959	.	A	.	.	LowGQX	END=152882981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:23
chr1	152882982	.	C	.	32.99	LowGQX	DP=3;MQ=23;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3:23:3
chr1	152882983	.	A	.	.	LowGQX	END=152882986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:34
chr1	152882987	.	G	.	39.01	LowGQX	DP=4;MQ=34;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.02:34:9
chr1	152882988	.	C	.	.	LowGQX	END=152882994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:34
chr1	152882995	.	G	.	39.01	LowGQX	DP=4;MQ=34;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.02:34:9
chr1	152882996	.	G	.	.	LowGQX	END=152883006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:34
chr1	152883007	.	T	.	.	LowGQX	END=152883008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:41
chr1	152883009	.	T	.	36.01	LowGQX	DP=5;MQ=41;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:41:6
chr1	152883010	.	C	.	.	LowGQX	END=152883011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:41
chr1	152883012	.	G	.	.	LowGQX	END=152883016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:41
chr1	152883017	.	G	.	42.02	LowGQX	DP=5;MQ=41;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.03:41:12
chr1	152883018	.	C	.	.	LowGQX	END=152883021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:41
chr1	152883022	.	A	.	39.02	LowGQX	DP=5;MQ=41;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:41:9
chr1	152883023	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:41
chr1	152883024	.	G	.	42.02	LowGQX	DP=5;MQ=41;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.03:41:12
chr1	152883025	.	G	.	.	LowGQX	END=152883030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:41
chr1	152883031	.	T	.	.	LowGQX	END=152883033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:42
chr1	152883034	.	A	.	33	LowGQX	DP=3;MQ=47;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:47:3
chr1	152883035	.	G	.	.	LowGQX	END=152883036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:47
chr1	152883037	.	T	.	33	LowGQX	DP=3;MQ=47;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:47:3
chr1	152883038	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:47
chr1	152883039	.	T	.	.	LowGQX	END=152883041	GT	./.
chr1	152883042	.	G	.	.	LowGQX	END=152883051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:47
chr1	152883052	.	A	.	33	LowGQX	DP=3;MQ=47;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:47:3
chr1	152883053	.	G	.	.	LowGQX	END=152883055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:47
chr1	152883056	.	A	.	.	LowGQX	.	GT	./.
chr1	152883057	.	C	.	.	LowGQX	END=152883062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:47
chr1	152883063	.	A	.	.	LowGQX	END=152883064	GT	./.
chr1	152883065	.	G	.	.	LowGQX	END=152883068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:47
chr1	152883069	.	C	.	33	LowGQX	DP=3;MQ=47;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:47:3
chr1	152883070	.	T	.	.	LowGQX	END=152883071	GT	./.
chr1	152883072	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:47
chr1	152883073	.	A	.	.	LowGQX	.	GT	./.
chr1	152883074	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:47
chr1	152883075	.	C	.	36.01	LowGQX	DP=3;MQ=47;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:47:6
chr1	152883076	.	A	.	.	LowGQX	.	GT	./.
chr1	152883077	.	C	.	33	LowGQX	DP=3;MQ=47;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:47:3
chr1	152883078	.	C	.	.	LowGQX	END=152883080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:47
chr1	152883081	.	G	.	.	LowGQX	END=152883082	GT	./.
chr1	152883083	.	G	.	.	LowGQX	END=152883084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:47
chr1	152883085	.	G	.	.	LowGQX	.	GT	./.
chr1	152883086	.	G	.	36.01	LowGQX	DP=3;MQ=47;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:47:6
chr1	152883087	.	C	.	.	LowGQX	END=152883088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:47
chr1	152883089	.	G	.	32.98	LowGQX	DP=3;MQ=47;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3:47:3
chr1	152883090	.	C	.	.	LowGQX	END=152883092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:47
chr1	152883093	.	G	.	.	LowGQX	END=152883148	GT	./.
chr1	152883149	.	G	.	.	LowGQX	END=152883181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883182	.	A	.	.	LowGQX	.	GT	./.
chr1	152883183	.	G	.	.	LowGQX	END=152883190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883191	.	A	.	.	LowGQX	.	GT	./.
chr1	152883192	.	G	.	.	LowGQX	END=152883217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883218	.	C	.	.	LowGQX	.	GT	./.
chr1	152883219	.	C	.	.	LowGQX	END=152883225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883226	.	A	.	.	LowGQX	.	GT	./.
chr1	152883227	.	G	.	.	LowGQX	END=152883230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883231	.	G	.	.	LowGQX	END=152883232	GT	./.
chr1	152883233	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883234	.	G	.	.	LowGQX	END=152883235	GT	./.
chr1	152883236	.	G	.	.	LowGQX	END=152883262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883263	.	G	.	.	LowGQX	END=152883265	GT	./.
chr1	152883266	.	G	.	.	LowGQX	END=152883268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883269	.	A	.	.	LowGQX	.	GT	./.
chr1	152883270	.	C	.	.	LowGQX	END=152883271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883272	.	G	.	.	LowGQX	.	GT	./.
chr1	152883273	.	G	.	.	LowGQX	END=152883277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883278	.	G	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	152883279	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883280	.	T	.	.	LowGQX	END=152883281	GT	./.
chr1	152883282	.	G	.	.	LowGQX	END=152883284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883285	.	G	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	152883286	.	A	.	.	LowGQX	END=152883292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883293	.	G	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	152883294	.	G	.	.	LowGQX	.	GT	./.
chr1	152883295	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883296	.	G	.	.	LowGQX	END=152883297	GT	./.
chr1	152883298	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883299	.	G	.	.	LowGQX	.	GT	./.
chr1	152883300	.	C	.	.	LowGQX	END=152883301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883302	.	G	.	.	LowGQX	.	GT	./.
chr1	152883303	.	A	.	.	LowGQX	END=152883304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883305	.	G	.	.	LowGQX	.	GT	./.
chr1	152883306	.	C	.	.	LowGQX	END=152883308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883309	.	C	.	.	LowGQX	END=152883311	GT	./.
chr1	152883312	.	G	.	.	LowGQX	END=152883325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:56
chr1	152883326	.	G	.	.	LowGQX	END=152883327	GT	./.
chr1	152883328	.	A	.	.	LowGQX	END=152883331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:56
chr1	152883332	.	G	.	.	LowGQX	END=152883333	GT	./.
chr1	152883334	.	A	.	.	LowGQX	END=152883336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:56
chr1	152883337	.	A	.	.	LowGQX	.	GT	./.
chr1	152883338	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:56
chr1	152883339	.	C	.	.	LowGQX	.	GT	./.
chr1	152883340	.	T	.	.	LowGQX	END=152883352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:56
chr1	152883353	.	A	.	.	LowGQX	.	GT	./.
chr1	152883354	.	G	.	.	LowGQX	END=152883381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:56
chr1	152883382	.	T	.	.	LowGQX	.	GT	./.
chr1	152883383	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883384	.	C	.	.	LowGQX	END=152883385	GT	./.
chr1	152883386	.	G	.	.	LowGQX	END=152883391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883392	.	G	.	.	LowGQX	END=152883393	GT	./.
chr1	152883394	.	A	.	.	LowGQX	END=152883395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883396	.	C	.	.	LowGQX	END=152883398	GT	./.
chr1	152883399	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883400	.	T	.	.	LowGQX	.	GT	./.
chr1	152883401	.	A	.	.	LowGQX	END=152883404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883405	.	A	.	.	LowGQX	.	GT	./.
chr1	152883406	.	A	.	.	LowGQX	END=152883410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883411	.	C	.	.	LowGQX	.	GT	./.
chr1	152883412	.	A	.	.	LowGQX	END=152883415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883416	.	G	.	.	LowGQX	.	GT	./.
chr1	152883417	.	C	.	.	LowGQX	END=152883420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883421	.	C	.	.	LowGQX	END=152883422	GT	./.
chr1	152883423	.	A	.	.	LowGQX	END=152883430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883431	.	G	.	.	LowGQX	.	GT	./.
chr1	152883432	.	G	.	.	LowGQX	END=152883434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883435	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152883436	.	A	.	.	LowGQX	END=152883437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	152883438	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152883439	.	A	.	.	LowGQX	END=152883451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883452	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152883453	.	A	.	.	LowGQX	END=152883459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883460	.	T	.	.	LowGQX	.	GT	./.
chr1	152883461	.	G	.	.	LowGQX	END=152883462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883463	.	T	.	.	LowGQX	.	GT	./.
chr1	152883464	.	G	.	.	LowGQX	END=152883470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883471	.	G	.	.	LowGQX	.	GT	./.
chr1	152883472	.	A	.	.	LowGQX	END=152883482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883483	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152883484	.	A	.	.	LowGQX	END=152883494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883495	.	C	.	.	LowGQX	.	GT	./.
chr1	152883496	.	A	.	.	LowGQX	END=152883499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883500	.	G	.	.	LowGQX	.	GT	./.
chr1	152883501	.	G	.	.	LowGQX	END=152883507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883508	.	A	.	.	LowGQX	.	GT	./.
chr1	152883509	.	G	.	.	LowGQX	END=152883530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883531	.	G	C	7.08	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=3.54;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,1:2:3.01:36,3,0:60:3:0.500
chr1	152883532	.	T	.	.	LowGQX	END=152883533	GT	./.
chr1	152883534	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883535	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152883536	.	G	.	.	LowGQX	END=152883538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883539	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152883540	.	C	.	.	LowGQX	END=152883543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152883544	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152883545	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152883546	.	C	.	.	LowGQX	END=152883552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152883553	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152883554	.	G	.	.	LowGQX	END=152883555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	152883556	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	152883557	.	G	.	.	LowGQX	END=152883559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152883560	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152883561	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152883562	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152883563	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152883564	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	152883565	.	A	.	.	LowGQX	END=152883568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152883569	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152883570	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	152883571	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152883572	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	152883573	.	G	.	.	LowGQX	END=152883579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152883580	.	A	.	.	LowGQX	END=152883583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	152883584	.	G	.	.	LowGQX	END=152883585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883586	.	G	.	.	LowGQX	END=152883587	GT	./.
chr1	152883588	.	C	.	.	LowGQX	END=152883589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883590	.	A	.	.	LowGQX	END=152883591	GT	./.
chr1	152883592	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883593	.	G	.	.	LowGQX	END=152883687	GT	./.
chr1	152883688	.	T	.	.	LowGQX	END=152883689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883690	.	C	.	.	LowGQX	.	GT	./.
chr1	152883691	.	C	.	.	LowGQX	END=152883695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883696	.	C	.	.	LowGQX	.	GT	./.
chr1	152883697	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883698	.	G	.	.	LowGQX	.	GT	./.
chr1	152883699	.	C	.	.	LowGQX	END=152883711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883712	.	T	.	.	LowGQX	.	GT	./.
chr1	152883713	.	G	.	.	LowGQX	END=152883718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883719	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152883720	.	C	.	.	LowGQX	END=152883725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883726	.	A	.	.	LowGQX	.	GT	./.
chr1	152883727	.	A	.	.	LowGQX	END=152883731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883732	.	G	.	.	LowGQX	.	GT	./.
chr1	152883733	.	A	.	.	LowGQX	END=152883736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883737	.	A	.	.	LowGQX	.	GT	./.
chr1	152883738	.	C	.	.	LowGQX	END=152883747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883748	.	T	.	.	LowGQX	.	GT	./.
chr1	152883749	.	C	.	.	LowGQX	END=152883755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883756	.	C	.	.	LowGQX	.	GT	./.
chr1	152883757	.	A	.	.	LowGQX	END=152883761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883762	.	G	.	.	LowGQX	.	GT	./.
chr1	152883763	.	T	.	.	LowGQX	END=152883765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883766	.	G	.	.	LowGQX	END=152883767	GT	./.
chr1	152883768	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	152883769	.	A	.	.	LowGQX	.	GT	./.
chr1	152883770	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152883771	.	C	.	.	LowGQX	END=152883772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883773	.	A	.	.	LowGQX	.	GT	./.
chr1	152883774	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152883775	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	152883776	.	G	.	.	LowGQX	END=152883780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152883781	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152883782	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152883783	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152883784	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152883785	.	A	.	.	LowGQX	.	GT	./.
chr1	152883786	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152883787	.	A	.	.	LowGQX	END=152883789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152883790	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152883791	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152883792	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	152883793	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152883794	.	A	.	.	LowGQX	END=152883795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152883796	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	152883797	.	G	.	.	LowGQX	END=152883799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152883800	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152883801	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152883802	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	152883803	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152883804	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	152883805	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152883806	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152883807	.	C	.	.	LowGQX	END=152883809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152883810	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	152883811	.	C	.	.	LowGQX	END=152883813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152883814	.	A	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr1	152883815	.	G	.	.	LowGQX	END=152883817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	152883818	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	152883819	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152883820	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152883821	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	152883822	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	152883823	.	A	.	.	LowGQX	END=152883825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883826	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	152883827	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152883828	.	C	.	.	LowGQX	END=152883829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883830	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	152883831	.	C	.	.	LowGQX	END=152883832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883833	.	A	.	.	LowGQX	.	GT	./.
chr1	152883834	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883835	.	A	.	.	LowGQX	.	GT	./.
chr1	152883836	.	A	.	.	LowGQX	END=152883838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152883839	.	T	.	.	LowGQX	.	GT	./.
chr1	152883840	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883841	.	T	.	.	LowGQX	END=152883842	GT	./.
chr1	152883843	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883844	.	A	.	.	LowGQX	.	GT	./.
chr1	152883845	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883846	.	C	.	.	LowGQX	.	GT	./.
chr1	152883847	.	A	.	.	LowGQX	END=152883848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883849	.	C	.	.	LowGQX	END=152883851	GT	./.
chr1	152883852	.	G	.	.	LowGQX	END=152883856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883857	.	G	.	.	LowGQX	END=152883858	GT	./.
chr1	152883859	.	A	.	.	LowGQX	END=152883860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883861	.	C	.	.	LowGQX	.	GT	./.
chr1	152883862	.	T	.	.	LowGQX	END=152883868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883869	.	C	.	.	LowGQX	.	GT	./.
chr1	152883870	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883871	.	T	.	.	LowGQX	.	GT	./.
chr1	152883872	.	G	.	.	LowGQX	END=152883875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883876	.	C	.	.	LowGQX	.	GT	./.
chr1	152883877	.	A	.	.	LowGQX	END=152883894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883895	.	A	.	.	LowGQX	.	GT	./.
chr1	152883896	.	G	.	.	LowGQX	END=152883906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883907	.	T	.	.	LowGQX	.	GT	./.
chr1	152883908	.	T	.	.	LowGQX	END=152883910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883911	.	C	.	.	LowGQX	.	GT	./.
chr1	152883912	.	C	.	.	LowGQX	END=152883924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883925	.	A	.	.	LowGQX	END=152883995	GT	./.
chr1	152883996	.	A	.	.	LowGQX	END=152883997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152883998	.	G	.	.	LowGQX	.	GT	./.
chr1	152883999	.	C	.	.	LowGQX	END=152884007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152884008	.	C	.	.	LowGQX	.	GT	./.
chr1	152884009	.	A	.	.	LowGQX	END=152884010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152884011	.	T	.	.	LowGQX	.	GT	./.
chr1	152884012	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152884013	.	G	.	.	LowGQX	END=152884014	GT	./.
chr1	152884015	.	C	.	.	LowGQX	END=152884016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	152884017	.	C	.	.	LowGQX	END=152884019	GT	./.
chr1	152884020	.	A	.	.	LowGQX	END=152884024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152884025	.	T	.	.	LowGQX	.	GT	./.
chr1	152884026	.	A	.	.	LowGQX	END=152884033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	152944365	.	C	.	.	LowGQX	END=152944608	GT	./.
chr1	152957705	.	G	.	.	LowGQX	END=152957978	GT	./.
chr1	152975495	.	G	A	88.84	PASS	BaseQRankSum=-0.400;DP=14;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.000;QD=6.35;ReadPosRankSum=-0.267;SB=-27.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:9,5:14:99:119,0,281:60:89:0.357
chr1	152975496	.	C	.	.	PASS	END=152975503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	152975504	.	C	.	.	PASS	END=152975521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	152975522	.	C	.	.	PASS	END=152975563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	152975564	.	A	.	.	PASS	END=152975604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	152975605	.	A	.	.	PASS	END=152975652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	152975653	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:72:60
chr1	152975654	.	T	.	.	PASS	END=152975656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	152975657	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:60:60
chr1	152975658	.	A	.	.	PASS	END=152975674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:58
chr1	152975675	.	A	.	.	PASS	END=152975684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:57
chr1	152975685	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:42:57
chr1	152975686	.	C	.	.	PASS	END=152975692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:57
chr1	152975693	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:39:57
chr1	152975694	.	T	.	54.06	LowGQX	DP=21;MQ=57;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:14:21:24.07:57:24
chr1	152975695	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:60:57
chr1	152975696	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:55
chr1	152975697	.	C	.	.	PASS	END=152975706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:53
chr1	152975707	.	G	.	.	PASS	END=152975708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:53
chr1	152975709	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:45:53
chr1	152975710	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:60:53
chr1	152975711	.	C	.	.	PASS	END=152975714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:53
chr1	152975715	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:54
chr1	152975716	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:27:54
chr1	152975717	.	G	.	69.09	PASS	DP=24;MQ=53;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:17:24:39.10:53:39
chr1	152975718	.	T	.	28.54	LowGQX	DP=25;MQ=52;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:16:25:2.34:52:2
chr1	152975719	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:51:52
chr1	152975720	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:52
chr1	152975721	.	C	.	.	PASS	END=152975723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:52
chr1	152975724	.	G	.	.	PASS	END=152975725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:36:52
chr1	152975726	.	T	.	.	PASS	END=152975728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:52
chr1	152975729	.	C	.	.	PASS	END=152975736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:52
chr1	152975737	.	G	.	.	PASS	END=152975738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:53
chr1	152975739	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:0:52
chr1	152975740	.	T	.	.	PASS	END=152975741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:51
chr1	152975742	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:15:51
chr1	152975743	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:60:51
chr1	152975744	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:45:51
chr1	152975745	.	C	.	.	PASS	END=152975748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:50
chr1	152975749	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:48:50
chr1	152975750	.	T	.	.	PASS	END=152975751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:49
chr1	152975752	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:27:49
chr1	152975753	.	C	.	.	PASS	END=152975754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:51:49
chr1	152975755	.	G	.	.	PASS	END=152975756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:49
chr1	152975757	.	G	.	.	PASS	END=152975761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:51:49
chr1	152975762	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:72:49
chr1	152975763	.	C	A	259.95	PASS	BaseQRankSum=0.245;DP=31;Dels=0.00;FS=5.315;HRun=0;HaplotypeScore=20.8570;MQ=49;MQ0=4;MQRankSum=-1.061;QD=8.39;ReadPosRankSum=1.441;SB=-27.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:16,13:31:99:290,0,234:49:99:0.448
chr1	152975764	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:54:49
chr1	152975765	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:21:50
chr1	152975766	.	T	.	60.09	PASS	DP=29;MQ=50;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:21:29:30.09:50:30
chr1	152975767	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:66:50
chr1	152975768	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:42:50
chr1	152975769	.	C	.	.	PASS	END=152975774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:50
chr1	152975775	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:36:50
chr1	152975776	.	C	.	.	PASS	END=152975778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:50
chr1	152975779	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:72:51
chr1	152975780	.	A	.	.	PASS	END=152975781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:54:51
chr1	152975782	.	C	.	.	PASS	END=152975786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:51
chr1	152975787	.	T	.	36.01	LowGQX	DP=30;MQ=52;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:18:30:6.02:52:6
chr1	152975788	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:48:51
chr1	152975789	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:30:51
chr1	152975790	.	T	.	60.08	PASS	DP=29;MQ=51;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:22:29:30.08:51:30
chr1	152975791	.	A	.	.	PASS	END=152975796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:51
chr1	152975797	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:9:52
chr1	152975798	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:63:53
chr1	152975799	.	C	.	63.09	PASS	DP=28;MQ=53;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:22:28:33.09:53:33
chr1	152975800	.	C	.	.	PASS	END=152975808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:53
chr1	152975809	.	G	.	.	PASS	END=152975810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:56
chr1	152975811	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:15:56
chr1	152975812	.	T	.	.	PASS	END=152975816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:48:57
chr1	152975817	.	C	.	.	PASS	END=152975822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:59
chr1	152975823	.	C	.	72.12	PASS	DP=29;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:21:29:42.12:59:42
chr1	152975824	.	C	.	.	PASS	END=152975828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:59
chr1	152975829	.	A	G	409.04	PASS	BaseQRankSum=1.842;DP=32;Dels=0.00;FS=19.417;HRun=0;HaplotypeScore=18.9384;MQ=59;MQ0=0;MQRankSum=-0.995;QD=12.78;ReadPosRankSum=-0.064;SB=-90.35	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:12,18:32:89.30:439,0,89:59:89:0.600
chr1	152975830	.	C	.	.	PASS	END=152975835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:59
chr1	152975836	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:39:60
chr1	152975837	.	G	.	.	PASS	END=152975838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr1	152975839	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:75:60
chr1	152975840	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:51:60
chr1	152975841	.	C	.	.	PASS	END=152975844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	152975845	.	G	.	.	PASS	END=152975854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	152975855	.	A	.	.	PASS	END=152975858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	152975859	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:37:60
chr1	152975860	.	T	.	.	PASS	END=152975863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	152975864	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:36:60
chr1	152975865	.	C	.	.	PASS	END=152975868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	152975869	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:27:60
chr1	152975870	.	T	.	.	PASS	END=152975871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:45:60
chr1	152975872	.	C	.	.	PASS	END=152975882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	152975883	.	T	.	.	PASS	END=152975884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:36:60
chr1	152975885	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:11:60
chr1	152975886	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:42:60
chr1	152975887	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:57:60
chr1	152975888	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:42:60
chr1	152975889	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:18:60
chr1	152975890	.	A	.	.	PASS	END=152975891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	152975892	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:60
chr1	152975893	.	G	.	.	PASS	END=152975894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	152975895	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:30:60
chr1	152975896	.	C	.	.	PASS	END=152975905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	152975906	.	G	.	.	PASS	END=152975919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	152975920	.	C	.	.	PASS	END=152975940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	152975941	.	C	G	414.94	PASS	BaseQRankSum=-1.981;DP=28;Dels=0.00;FS=4.771;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.461;QD=14.82;ReadPosRankSum=-1.060;SB=-128.09	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,15:28:99:445,0,427:60:99:0.536
chr1	152975942	.	T	.	.	PASS	END=152975965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	152975966	.	T	.	.	PASS	END=152975990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	152975991	.	G	.	.	PASS	END=152976008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	153004820	.	G	.	.	LowGQX	END=153004878	GT	./.
chr1	153004879	.	C	.	.	LowGQX	END=153004881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153004882	.	G	.	.	LowGQX	.	GT	./.
chr1	153004883	.	T	.	.	LowGQX	END=153004893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153004894	.	T	.	.	LowGQX	END=153004895	GT	./.
chr1	153004896	.	C	.	.	LowGQX	END=153004898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153004899	.	G	.	.	LowGQX	.	GT	./.
chr1	153004900	.	C	.	.	LowGQX	END=153004916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153004917	.	A	.	.	LowGQX	END=153004919	GT	./.
chr1	153004920	.	C	.	.	LowGQX	END=153004921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153004922	.	T	.	.	LowGQX	.	GT	./.
chr1	153004923	.	C	.	.	LowGQX	END=153004928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153004929	.	A	.	.	LowGQX	END=153004930	GT	./.
chr1	153004931	.	C	.	.	LowGQX	END=153004935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153004936	.	G	.	.	LowGQX	.	GT	./.
chr1	153004937	.	A	.	.	LowGQX	END=153004941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153004942	.	T	.	.	LowGQX	.	GT	./.
chr1	153004943	.	G	.	.	LowGQX	END=153004948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153004949	.	C	.	.	LowGQX	.	GT	./.
chr1	153004950	.	C	.	.	LowGQX	END=153004954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153004955	.	T	.	.	LowGQX	.	GT	./.
chr1	153004956	.	G	.	.	LowGQX	END=153004958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153004959	.	T	.	.	LowGQX	.	GT	./.
chr1	153004960	.	G	.	.	LowGQX	END=153004977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153004978	.	G	.	.	LowGQX	END=153004979	GT	./.
chr1	153004980	.	G	.	.	LowGQX	END=153004982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153004983	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	153004984	.	G	.	.	LowGQX	END=153005002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153005003	.	T	.	.	LowGQX	.	GT	./.
chr1	153005004	.	T	.	.	LowGQX	END=153005026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153005027	.	T	.	.	LowGQX	END=153005093	GT	./.
chr1	153012602	.	T	.	.	LowGQX	END=153012639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153012640	.	T	.	.	LowGQX	.	GT	./.
chr1	153012641	.	G	.	.	LowGQX	END=153012645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153012646	.	A	.	.	LowGQX	.	GT	./.
chr1	153012647	.	G	.	.	LowGQX	END=153012653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153012654	.	C	.	.	LowGQX	.	GT	./.
chr1	153012655	.	A	.	.	LowGQX	END=153012694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153012695	.	T	.	.	LowGQX	.	GT	./.
chr1	153012696	.	G	.	.	LowGQX	END=153012711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153012712	.	T	.	.	LowGQX	END=153012793	GT	./.
chr1	153012794	.	T	.	.	LowGQX	END=153012824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153028991	.	T	.	.	LowGQX	END=153029236	GT	./.
chr1	153043095	.	T	.	.	LowGQX	END=153043336	GT	./.
chr1	153066007	.	T	.	.	LowGQX	END=153066082	GT	./.
chr1	153066083	.	G	.	.	LowGQX	END=153066091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	153066092	.	G	.	.	LowGQX	.	GT	./.
chr1	153066093	.	G	.	.	LowGQX	END=153066101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	153066102	.	T	.	.	LowGQX	.	GT	./.
chr1	153066103	.	G	.	.	LowGQX	END=153066109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	153066110	.	T	.	.	LowGQX	.	GT	./.
chr1	153066111	.	T	.	.	LowGQX	END=153066118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	153066119	.	G	.	.	LowGQX	.	GT	./.
chr1	153066120	.	G	.	.	LowGQX	END=153066151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	153066152	.	G	.	.	LowGQX	END=153066229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:56
chr1	153084989	.	T	.	.	LowGQX	END=153085211	GT	./.
chr1	153112966	.	G	.	.	LowGQX	END=153113013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153113014	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	153113015	.	C	.	.	LowGQX	END=153113091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153113092	.	A	.	.	LowGQX	END=153113146	GT	./.
chr1	153122322	.	A	.	.	LowGQX	END=153122588	GT	./.
chr1	153177182	.	C	.	.	LowGQX	END=153177482	GT	./.
chr1	153190620	.	G	.	.	LowGQX	END=153190971	GT	./.
chr1	153233375	.	C	.	.	PASS	END=153233461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	153233462	.	C	.	.	PASS	END=153233475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	153233476	.	G	.	.	PASS	END=153233481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	153233482	.	C	.	.	PASS	END=153233492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	153233493	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:36:60
chr1	153233494	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:57:60
chr1	153233495	.	G	.	.	PASS	END=153233499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	153233500	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:51:60
chr1	153233501	.	G	.	.	PASS	END=153233509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	153233510	.	A	G	384.09	PASS	BaseQRankSum=2.179;DP=36;Dels=0.03;FS=1.768;HRun=1;HaplotypeScore=8.7164;MQ=60;MQ0=0;MQRankSum=-1.171;QD=10.67;ReadPosRankSum=-0.198;SB=-197.70	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:16,17:35:99:414,0,299:60:99:0.515
chr1	153233511	.	G	.	.	PASS	END=153233517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	153233518	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:45:60
chr1	153233519	.	G	.	.	PASS	END=153233520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	153233521	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:51:60
chr1	153233522	.	G	.	.	PASS	END=153233524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:59
chr1	153233525	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:57:59
chr1	153233526	.	G	.	.	PASS	END=153233531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:59
chr1	153233532	.	T	.	.	PASS	END=153233536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:59
chr1	153233537	.	G	.	.	PASS	END=153233548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:59
chr1	153233549	.	T	.	.	PASS	END=153233550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:59
chr1	153233551	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:28:59
chr1	153233552	.	G	.	.	PASS	END=153233559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:59
chr1	153233560	.	T	.	.	PASS	END=153233561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	153233562	.	G	.	.	PASS	END=153233568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	153233569	.	T	.	.	PASS	END=153233570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	153233571	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:63:60
chr1	153233572	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:42:60
chr1	153233573	.	G	.	.	PASS	END=153233576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	153233577	.	G	.	.	PASS	END=153233582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	153233583	.	A	.	.	PASS	END=153233587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	153233588	.	G	.	.	PASS	END=153233594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	153233595	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	153233596	.	T	.	.	LowGQX	END=153233597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	153233598	.	G	.	.	LowGQX	END=153233600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	153233601	.	A	.	39.02	LowGQX	DP=8;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:8:9.03:60:9
chr1	153233602	.	C	.	.	LowGQX	END=153233603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	153233604	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	153233605	.	T	.	39.02	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:9.03:60:9
chr1	153233606	.	G	.	.	PASS	END=153233607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	153233608	.	C	.	.	LowGQX	END=153233614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	153233615	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	153233616	.	G	.	.	LowGQX	END=153233617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:57
chr1	153233618	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:57
chr1	153233619	.	G	.	.	LowGQX	END=153233620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:57
chr1	153233621	.	G	.	.	LowGQX	END=153233622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:57
chr1	153233623	.	G	.	39.02	LowGQX	DP=8;MQ=57;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:8:9.03:57:9
chr1	153233624	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:57
chr1	153233625	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:57
chr1	153233626	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:57
chr1	153233627	.	T	.	.	LowGQX	END=153233628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:56
chr1	153233629	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:21:57
chr1	153233630	.	T	.	.	LowGQX	END=153233633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:57
chr1	153233634	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:27:57
chr1	153233635	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:57
chr1	153233636	.	G	.	.	LowGQX	END=153233637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:57
chr1	153233638	.	C	.	.	LowGQX	END=153233639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:57
chr1	153233640	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:57
chr1	153233641	.	G	.	39.02	LowGQX	DP=7;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:7:9.03:56:9
chr1	153233642	.	G	.	.	LowGQX	END=153233644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:56
chr1	153233645	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:56
chr1	153233646	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:56
chr1	153233647	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:56
chr1	153233648	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:56
chr1	153233649	.	G	.	.	LowGQX	END=153233652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:56
chr1	153233653	.	C	.	.	LowGQX	END=153233657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:57
chr1	153233658	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:58
chr1	153233659	.	A	.	54.07	LowGQX	DP=11;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:11:24.08:58:24
chr1	153233660	.	G	.	.	LowGQX	END=153233662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:57
chr1	153233663	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:57
chr1	153233664	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:58
chr1	153233665	.	C	.	.	PASS	END=153233667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:58
chr1	153233668	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:58
chr1	153233669	.	G	.	.	PASS	END=153233672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:58
chr1	153233673	.	G	.	.	PASS	END=153233675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:58
chr1	153233676	.	C	.	.	PASS	END=153233684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:59
chr1	153233685	.	G	.	.	PASS	END=153233694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:59
chr1	153233695	.	C	.	.	PASS	END=153233711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:59
chr1	153233712	.	C	.	.	PASS	END=153233720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:59
chr1	153233721	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:54:59
chr1	153233722	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:39:60
chr1	153233723	.	G	.	.	PASS	END=153233726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	153233727	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:57:60
chr1	153233728	.	T	.	66.08	PASS	DP=30;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:24:30:36.08:60:36
chr1	153233729	.	G	.	.	PASS	END=153233730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	153233731	.	C	.	.	PASS	END=153233733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	153233734	.	T	.	45.04	LowGQX	DP=30;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:19:30:15.05:60:15
chr1	153233735	.	T	.	.	PASS	END=153233736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:60
chr1	153233737	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:81:60
chr1	153233738	.	T	.	.	PASS	END=153233739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:48:60
chr1	153233740	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:72:60
chr1	153233741	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:48:60
chr1	153233742	.	G	.	.	PASS	END=153233745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	153233746	.	T	.	51.06	LowGQX	DP=31;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:20:31:21.07:60:21
chr1	153233747	.	G	.	.	PASS	END=153233755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:58
chr1	153233756	.	T	.	57.08	LowGQX	DP=35;MQ=59;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:28:35:27.09:59:27
chr1	153233757	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:30:59
chr1	153233758	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:75:59
chr1	153233759	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:36:59
chr1	153233760	.	G	.	.	PASS	END=153233761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:48:58
chr1	153233762	.	T	.	26.98	LowGQX	DP=31;MQ=58;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:24:31:1.76:58:2
chr1	153233763	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:51:58
chr1	153233764	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:72:58
chr1	153233765	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:36:58
chr1	153233766	.	T	.	60.09	PASS	DP=29;MQ=58;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:22:29:30.09:58:30
chr1	153233767	.	C	.	.	PASS	END=153233768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:51:58
chr1	153233769	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:33:58
chr1	153233770	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:81:58
chr1	153233771	.	T	.	.	PASS	END=153233772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:45:58
chr1	153233773	.	C	.	.	PASS	END=153233775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:51:58
chr1	153233776	.	T	.	54.07	LowGQX	DP=31;MQ=58;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:17:31:24.08:58:24
chr1	153233777	.	G	.	.	PASS	END=153233779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:57
chr1	153233780	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:48:57
chr1	153233781	.	G	.	.	PASS	END=153233782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:57
chr1	153233783	.	G	.	.	PASS	END=153233785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:51:57
chr1	153233786	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:39:56
chr1	153233787	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:54:57
chr1	153233788	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:39:57
chr1	153233789	.	T	.	60.09	PASS	DP=30;MQ=57;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:23:30:30.09:57:30
chr1	153233790	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:30:57
chr1	153233791	.	C	.	.	PASS	END=153233793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:58
chr1	153233794	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:39:58
chr1	153233795	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:51:59
chr1	153233796	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:69:59
chr1	153233797	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:45:59
chr1	153233798	.	G	.	.	PASS	END=153233800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:59
chr1	153233801	.	T	.	.	PASS	END=153233803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:36:59
chr1	153233804	.	G	.	.	PASS	END=153233805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:48:59
chr1	153233806	.	C	.	.	PASS	END=153233807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:39:58
chr1	153233808	.	G	.	.	PASS	END=153233809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:58
chr1	153233810	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:0:58
chr1	153233811	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:21:58
chr1	153233812	.	C	.	.	PASS	END=153233814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:30:58
chr1	153233815	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:48:58
chr1	153233816	.	A	.	51.06	LowGQX	DP=24;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:17:24:21.07:58:21
chr1	153233817	.	G	.	.	PASS	END=153233818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:58
chr1	153233819	.	G	.	.	PASS	END=153233820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	153233821	.	T	.	4.69	LowGQX	DP=22;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:22:0.01:60:0
chr1	153233822	.	G	.	.	PASS	END=153233823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:58
chr1	153233824	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:36:58
chr1	153233825	.	G	.	.	PASS	END=153233826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:58
chr1	153233827	.	C	.	.	PASS	END=153233829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:39:58
chr1	153233830	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:51:58
chr1	153233831	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:27:58
chr1	153233832	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:30:58
chr1	153233833	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:42:58
chr1	153233834	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:30:58
chr1	153233835	.	C	.	.	LowGQX	END=153233836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:24:58
chr1	153233837	.	G	.	.	PASS	END=153233838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:58
chr1	153233839	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:24:58
chr1	153233840	.	G	.	.	PASS	END=153233845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:58
chr1	153233846	.	T	.	.	PASS	END=153233847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:33:58
chr1	153233848	.	C	.	.	PASS	END=153233850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:58
chr1	153233851	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:30:58
chr1	153233852	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:24:59
chr1	153233853	.	G	.	.	PASS	END=153233854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:59
chr1	153233855	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:39:59
chr1	153233856	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:27:59
chr1	153233857	.	C	.	.	PASS	END=153233859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:59
chr1	153233860	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:66:59
chr1	153233861	.	T	.	.	PASS	END=153233862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:59
chr1	153233863	.	C	.	.	PASS	END=153233865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:59
chr1	153233866	.	C	.	.	PASS	END=153233867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:59
chr1	153233868	.	G	.	.	PASS	END=153233875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:59
chr1	153233876	.	T	.	.	PASS	END=153233884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:59
chr1	153233885	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:45:59
chr1	153233886	.	A	.	.	PASS	END=153233890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:59
chr1	153233891	.	G	.	.	PASS	END=153233897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	153233898	.	G	.	.	PASS	END=153233911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	153233912	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:54:60
chr1	153233913	.	G	.	.	PASS	END=153233927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	153233928	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:49:60
chr1	153233929	.	C	.	.	PASS	END=153233940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:59
chr1	153233941	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:48:59
chr1	153233942	.	G	.	.	PASS	END=153233949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:59
chr1	153233950	.	C	.	.	PASS	END=153233951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:63:59
chr1	153233952	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:84:59
chr1	153233953	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:38:18:59
chr1	153233954	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:42:59
chr1	153233955	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:59
chr1	153233956	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:93:59
chr1	153233957	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:66:59
chr1	153233958	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:39:18:59
chr1	153233959	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:81:59
chr1	153233960	.	A	.	63.08	PASS	DP=39;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:30:39:33.09:59:33
chr1	153233961	.	G	.	.	PASS	END=153233965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:59
chr1	153233966	.	G	.	.	PASS	END=153233967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:60:59
chr1	153233968	.	G	.	.	PASS	END=153233973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:59
chr1	153233974	.	C	.	.	PASS	END=153233977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:59
chr1	153233978	.	T	.	.	PASS	END=153233980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:54:60
chr1	153233981	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:87:60
chr1	153233982	.	T	.	96.20	PASS	DP=39;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:31:39:66.21:60:66
chr1	153233983	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:87:60
chr1	153233984	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:66:60
chr1	153233985	.	G	.	.	PASS	END=153233989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	153233990	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:72:60
chr1	153233991	.	A	.	.	PASS	END=153233992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:48:59
chr1	153233993	.	T	.	.	PASS	END=153233994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:59
chr1	153233995	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:59
chr1	153233996	.	G	.	.	PASS	END=153234006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:59
chr1	153234007	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:54:59
chr1	153234008	.	G	.	.	PASS	END=153234018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:59
chr1	153234019	.	A	.	.	PASS	END=153234020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:69:59
chr1	153234021	.	G	.	.	PASS	END=153234022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:59
chr1	153234023	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:69:59
chr1	153234024	.	C	.	.	PASS	END=153234027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:59
chr1	153234028	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:75:60
chr1	153234029	.	G	.	.	PASS	END=153234034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	153234035	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:60:60
chr1	153234036	.	G	.	.	PASS	END=153234099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	153234100	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:71:60
chr1	153234101	.	G	.	.	PASS	END=153234127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	153234128	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:66:60
chr1	153234129	.	G	.	.	PASS	END=153234135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	153234136	.	A	.	.	PASS	END=153234137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:45:60
chr1	153234138	.	G	.	.	PASS	END=153234146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:59
chr1	153234147	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:72:59
chr1	153234148	.	C	.	.	PASS	END=153234151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:59
chr1	153234152	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:60:59
chr1	153234153	.	G	.	.	PASS	END=153234183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:59
chr1	153234184	.	C	.	.	PASS	END=153234218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:81:60
chr1	153234219	.	T	.	.	PASS	END=153234250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	153234251	.	T	.	.	PASS	END=153234277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	153234278	.	T	.	.	PASS	END=153234291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	153234292	.	C	.	.	PASS	END=153234428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	153234429	.	G	.	.	PASS	END=153234439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	153234440	.	A	.	.	PASS	END=153234446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	153270430	.	C	.	.	LowGQX	END=153270536	GT	./.
chr1	153270537	.	C	.	.	LowGQX	END=153270604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153270605	.	G	.	.	LowGQX	.	GT	./.
chr1	153270606	.	C	.	.	LowGQX	END=153270612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153271587	.	A	.	.	LowGQX	END=153271709	GT	./.
chr1	153274883	.	A	.	.	LowGQX	END=153275085	GT	./.
chr1	153276331	.	A	.	.	LowGQX	END=153276487	GT	./.
chr1	153277421	.	A	.	.	LowGQX	END=153277423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153277424	.	T	.	.	LowGQX	END=153277543	GT	./.
chr1	153279540	.	A	.	.	LowGQX	END=153279745	GT	./.
chr1	153283005	.	G	.	.	LowGQX	END=153283164	GT	./.
chr1	153303241	.	T	.	.	LowGQX	END=153303423	GT	./.
chr1	153309585	.	C	.	.	LowGQX	END=153309777	GT	./.
chr1	153312855	.	A	.	.	LowGQX	END=153313057	GT	./.
chr1	153314101	.	A	.	.	LowGQX	END=153314228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153314229	.	A	.	.	LowGQX	.	GT	./.
chr1	153314230	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153314231	.	A	.	.	LowGQX	.	GT	./.
chr1	153314232	.	G	.	.	LowGQX	END=153314249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153314250	.	T	.	.	LowGQX	.	GT	./.
chr1	153314251	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153314252	.	T	.	.	LowGQX	.	GT	./.
chr1	153314253	.	G	.	.	LowGQX	END=153314257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153315564	.	A	.	.	LowGQX	END=153315686	GT	./.
chr1	153317643	.	A	.	.	LowGQX	END=153317860	GT	./.
chr1	153318573	.	T	.	.	LowGQX	END=153318662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153318663	.	A	.	.	LowGQX	.	GT	./.
chr1	153318664	.	T	.	.	LowGQX	END=153318672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153320278	.	A	.	.	LowGQX	END=153320434	GT	./.
chr1	153330758	.	C	.	.	LowGQX	END=153330911	GT	./.
chr1	153333118	.	A	.	.	LowGQX	END=153333316	GT	./.
chr1	153346301	.	A	.	.	LowGQX	END=153346329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153346330	.	A	.	.	LowGQX	END=153346445	GT	./.
chr1	153346449	.	A	.	.	LowGQX	END=153346548	GT	./.
chr1	153346929	.	A	.	.	LowGQX	END=153346942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153346943	.	T	.	.	LowGQX	.	GT	./.
chr1	153346944	.	G	.	.	LowGQX	END=153346960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153346961	.	C	.	.	LowGQX	.	GT	./.
chr1	153346962	.	A	.	.	LowGQX	END=153347077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153362577	.	A	.	.	LowGQX	END=153362721	GT	./.
chr1	153362869	.	A	.	.	LowGQX	END=153363013	GT	./.
chr1	153390557	.	A	.	.	LowGQX	END=153390636	GT	./.
chr1	153390637	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153390638	.	T	.	.	LowGQX	.	GT	./.
chr1	153390639	.	T	.	.	LowGQX	END=153390647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153390648	.	A	.	.	LowGQX	.	GT	./.
chr1	153390649	.	A	.	.	LowGQX	END=153390661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153390662	.	T	.	.	LowGQX	END=153390663	GT	./.
chr1	153390664	.	A	.	.	LowGQX	END=153390669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153390670	.	G	.	.	LowGQX	END=153390671	GT	./.
chr1	153390672	.	G	.	.	LowGQX	END=153390673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153390674	.	A	.	.	LowGQX	.	GT	./.
chr1	153390675	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153390676	.	T	.	.	LowGQX	.	GT	./.
chr1	153390677	.	T	.	.	LowGQX	END=153390682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153390683	.	A	.	.	LowGQX	.	GT	./.
chr1	153390684	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153390685	.	T	.	.	LowGQX	END=153390686	GT	./.
chr1	153390687	.	C	.	.	LowGQX	END=153390699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153390700	.	G	.	.	LowGQX	.	GT	./.
chr1	153390701	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153391619	.	A	.	.	LowGQX	END=153391787	GT	./.
chr1	153409532	.	G	.	.	LowGQX	END=153409700	GT	./.
chr1	153410663	.	A	.	.	LowGQX	END=153410738	GT	./.
chr1	153410739	.	C	.	.	LowGQX	END=153410821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153410822	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	153412368	.	C	.	.	LowGQX	END=153412381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153412382	.	A	.	.	LowGQX	.	GT	./.
chr1	153412383	.	A	.	.	LowGQX	END=153412391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153412392	.	T	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	153412393	.	A	.	.	LowGQX	END=153412400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153412401	.	G	.	.	LowGQX	.	GT	./.
chr1	153412402	.	A	.	.	LowGQX	END=153412405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153412406	.	T	.	.	LowGQX	.	GT	./.
chr1	153412407	.	T	.	.	LowGQX	END=153412412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153412413	.	A	.	.	LowGQX	.	GT	./.
chr1	153412414	.	G	.	.	LowGQX	END=153412432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153412433	.	A	.	.	LowGQX	.	GT	./.
chr1	153412434	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153412435	.	A	.	.	LowGQX	.	GT	./.
chr1	153412436	.	A	.	.	LowGQX	END=153412439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153412440	.	T	.	.	LowGQX	END=153412467	GT	./.
chr1	153430280	.	G	.	.	LowGQX	END=153430281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153430282	.	T	.	.	LowGQX	.	GT	./.
chr1	153430283	.	C	.	.	LowGQX	END=153430285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153430286	.	T	.	.	LowGQX	END=153430287	GT	./.
chr1	153430288	.	G	.	.	LowGQX	END=153430291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153430292	.	C	.	.	LowGQX	.	GT	./.
chr1	153430293	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153430294	.	C	.	.	LowGQX	.	GT	./.
chr1	153430295	.	C	.	.	LowGQX	END=153430296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153430297	.	G	.	.	LowGQX	.	GT	./.
chr1	153430298	.	G	.	.	LowGQX	END=153430301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153430302	.	A	.	.	LowGQX	.	GT	./.
chr1	153430303	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153430304	.	G	.	.	LowGQX	.	GT	./.
chr1	153430305	.	G	.	.	LowGQX	END=153430313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153430314	.	C	.	.	LowGQX	END=153430448	GT	./.
chr1	153431347	.	A	.	.	LowGQX	END=153431491	GT	./.
chr1	153507170	.	T	.	.	LowGQX	END=153507177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153507178	.	C	.	.	LowGQX	.	GT	./.
chr1	153507179	.	T	.	.	LowGQX	END=153507180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153507181	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153507182	.	A	.	.	LowGQX	END=153507205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153507206	.	A	.	.	LowGQX	.	GT	./.
chr1	153507207	.	A	.	.	LowGQX	END=153507241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153507242	.	A	.	.	LowGQX	.	GT	./.
chr1	153507243	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153507244	.	C	.	.	LowGQX	.	GT	./.
chr1	153507245	.	T	.	.	LowGQX	END=153507250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153507251	.	T	.	.	LowGQX	.	GT	./.
chr1	153507252	.	C	.	.	LowGQX	END=153507259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153507260	.	C	.	.	LowGQX	.	GT	./.
chr1	153507261	.	G	.	.	LowGQX	END=153507277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153507278	.	A	.	.	LowGQX	END=153507279	GT	./.
chr1	153507280	.	C	.	.	LowGQX	END=153507281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153507282	.	T	.	.	LowGQX	END=153507283	GT	./.
chr1	153507284	.	G	.	.	LowGQX	END=153507297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153507298	.	C	.	.	LowGQX	.	GT	./.
chr1	153507299	.	T	.	.	LowGQX	END=153507308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153507676	.	A	.	.	LowGQX	END=153507762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153507763	.	T	.	.	LowGQX	END=153507764	GT	./.
chr1	153507765	.	G	.	.	LowGQX	END=153507817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153509770	.	G	.	.	LowGQX	END=153509914	GT	./.
chr1	153512528	.	A	.	.	LowGQX	END=153512683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153513831	.	T	.	.	LowGQX	END=153513930	GT	./.
chr1	153516233	.	T	.	.	LowGQX	END=153516250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153516251	.	T	.	.	LowGQX	END=153516401	GT	./.
chr1	153517128	.	A	.	.	LowGQX	END=153517272	GT	./.
chr1	153520156	.	G	.	.	LowGQX	END=153520163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153520164	.	G	.	.	LowGQX	.	GT	./.
chr1	153520165	.	G	.	.	LowGQX	END=153520175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153520176	.	C	.	.	LowGQX	.	GT	./.
chr1	153520177	.	T	.	.	LowGQX	END=153520185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153520186	.	C	.	.	LowGQX	.	GT	./.
chr1	153520187	.	A	.	.	LowGQX	END=153520188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153520189	.	T	.	.	LowGQX	.	GT	./.
chr1	153520190	.	C	.	.	LowGQX	END=153520202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153520203	.	G	.	.	LowGQX	.	GT	./.
chr1	153520204	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153520205	.	G	.	.	LowGQX	.	GT	./.
chr1	153520206	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153520207	.	C	.	.	LowGQX	.	GT	./.
chr1	153520208	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153520209	.	G	.	.	LowGQX	END=153520324	GT	./.
chr1	153520788	.	G	.	.	LowGQX	END=153520963	GT	./.
chr1	153533913	.	C	.	.	LowGQX	END=153533947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153533948	.	A	.	.	LowGQX	END=153534102	GT	./.
chr1	153535889	.	G	.	.	LowGQX	END=153535891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153535892	.	A	.	.	LowGQX	.	GT	./.
chr1	153535893	.	G	.	.	LowGQX	END=153535980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153535981	.	A	.	.	LowGQX	END=153536012	GT	./.
chr1	153536208	.	A	.	.	LowGQX	END=153536352	GT	./.
chr1	153580008	.	C	.	.	LowGQX	END=153580046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153580047	.	T	.	.	LowGQX	END=153580048	GT	./.
chr1	153580049	.	G	.	.	LowGQX	END=153580170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153580473	.	A	.	.	LowGQX	END=153580629	GT	./.
chr1	153587359	.	T	.	.	PASS	END=153587360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	153587361	.	T	.	.	PASS	END=153587371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	153587372	.	G	.	.	PASS	END=153587381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:84:60
chr1	153587382	.	C	.	.	PASS	END=153587404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	153587405	.	C	.	.	PASS	END=153587500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	153587709	.	A	.	.	PASS	END=153587751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	153587752	.	G	.	.	PASS	END=153587842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	153587843	.	G	.	.	PASS	END=153587859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	153588270	.	G	.	.	PASS	END=153588278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	153588279	.	G	A	1533.92	PASS	BaseQRankSum=1.343;DP=126;Dels=0.00;FS=2.381;HRun=3;HaplotypeScore=17.0445;MQ=60;MQ0=0;MQRankSum=-1.407;QD=12.17;ReadPosRankSum=-0.614;SB=-1120.24	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:54,72:126:99:1564,0,1125:60:99:0.571
chr1	153588280	.	A	.	.	PASS	END=153588339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	153588340	.	C	T	925.32	PASS	BaseQRankSum=-0.029;DP=105;Dels=0.00;FS=0.783;HRun=0;HaplotypeScore=7.6281;MQ=60;MQ0=0;MQRankSum=-0.912;QD=8.81;ReadPosRankSum=1.455;SB=-501.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:63,42:105:99:955,0,1569:60:99:0.400
chr1	153588341	.	C	.	.	PASS	END=153588369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	153591369	.	C	.	.	LowGQX	END=153591516	GT	./.
chr1	153598794	.	A	.	.	LowGQX	END=153598950	GT	./.
chr1	153600537	.	C	.	.	LowGQX	END=153600566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	153600567	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	153600568	.	A	.	.	LowGQX	END=153600569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	153600570	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	153600571	.	C	.	.	LowGQX	END=153600583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	153600584	.	A	.	10.70	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.05:60:0
chr1	153600585	.	T	.	.	LowGQX	END=153600636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153600888	.	G	.	.	LowGQX	END=153600915	GT	./.
chr1	153600916	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153600917	.	T	.	.	LowGQX	.	GT	./.
chr1	153600918	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153600919	.	T	.	.	LowGQX	.	GT	./.
chr1	153600920	.	G	.	.	LowGQX	END=153600922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153600923	.	A	.	.	LowGQX	END=153600924	GT	./.
chr1	153600925	.	C	.	.	LowGQX	END=153600927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153600928	.	G	.	.	LowGQX	.	GT	./.
chr1	153600929	.	G	.	.	LowGQX	END=153600931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153600932	.	A	.	.	LowGQX	END=153600933	GT	./.
chr1	153600934	.	C	.	.	LowGQX	END=153600935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153600936	.	G	.	.	LowGQX	END=153600937	GT	./.
chr1	153600938	.	C	.	.	LowGQX	END=153600940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153600941	.	G	.	.	LowGQX	.	GT	./.
chr1	153600942	.	A	.	.	LowGQX	END=153600951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153600952	.	C	.	.	LowGQX	END=153600953	GT	./.
chr1	153600954	.	C	.	.	LowGQX	END=153600955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153600956	.	T	.	.	LowGQX	.	GT	./.
chr1	153600957	.	C	.	.	LowGQX	END=153600965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153600966	.	G	.	.	LowGQX	.	GT	./.
chr1	153600967	.	C	.	.	LowGQX	END=153600968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153600969	.	A	.	.	LowGQX	.	GT	./.
chr1	153600970	.	A	.	.	LowGQX	END=153600972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153600973	.	G	.	.	LowGQX	END=153600974	GT	./.
chr1	153600975	.	G	.	.	LowGQX	END=153600977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153600978	.	T	.	.	LowGQX	.	GT	./.
chr1	153600979	.	A	.	.	LowGQX	END=153600982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153600983	.	T	.	.	LowGQX	.	GT	./.
chr1	153600984	.	G	.	.	LowGQX	END=153600986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153600987	.	C	.	.	LowGQX	.	GT	./.
chr1	153602984	.	G	.	.	LowGQX	END=153603140	GT	./.
chr1	153603948	.	A	.	.	LowGQX	END=153604047	GT	./.
chr1	153604172	.	A	.	.	LowGQX	END=153604173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153604174	.	G	.	.	LowGQX	.	GT	./.
chr1	153604175	.	C	.	.	LowGQX	END=153604184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153604185	.	T	.	.	LowGQX	.	GT	./.
chr1	153604186	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153604187	.	T	.	.	LowGQX	END=153604188	GT	./.
chr1	153604189	.	G	.	.	LowGQX	END=153604319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153609048	.	A	.	.	LowGQX	END=153609147	GT	./.
chr1	153610769	.	A	.	.	LowGQX	END=153611002	GT	./.
chr1	153614718	.	G	.	.	LowGQX	END=153614909	GT	./.
chr1	153614910	.	G	.	.	LowGQX	END=153614925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153615630	.	C	.	.	LowGQX	END=153615842	GT	./.
chr1	153617538	.	A	.	.	LowGQX	END=153617747	GT	./.
chr1	153631187	.	C	.	.	LowGQX	END=153631190	GT	./.
chr1	153631191	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153631192	.	C	.	.	LowGQX	.	GT	./.
chr1	153631193	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153631194	.	G	.	.	LowGQX	.	GT	./.
chr1	153631195	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153631196	.	T	.	.	LowGQX	.	GT	./.
chr1	153631197	.	T	.	.	LowGQX	END=153631198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153631199	.	C	.	.	LowGQX	END=153631200	GT	./.
chr1	153631201	.	G	.	.	LowGQX	END=153631202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153631203	.	C	.	.	LowGQX	END=153631204	GT	./.
chr1	153631205	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153631206	.	C	.	.	LowGQX	END=153631208	GT	./.
chr1	153631209	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153631210	.	A	.	.	LowGQX	.	GT	./.
chr1	153631211	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153631212	.	A	.	.	LowGQX	.	GT	./.
chr1	153631213	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153631214	.	T	.	.	LowGQX	.	GT	./.
chr1	153631215	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153631216	.	C	.	.	LowGQX	END=153631217	GT	./.
chr1	153631218	.	T	.	.	LowGQX	END=153631219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153631220	.	A	.	.	LowGQX	.	GT	./.
chr1	153631221	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153631222	.	G	.	.	LowGQX	.	GT	./.
chr1	153631223	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153631224	.	C	.	.	LowGQX	END=153631225	GT	./.
chr1	153631226	.	G	.	.	LowGQX	END=153631229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153631230	.	C	.	.	LowGQX	END=153631235	GT	./.
chr1	153631236	.	C	.	.	LowGQX	END=153631242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153631243	.	T	.	.	LowGQX	.	GT	./.
chr1	153631244	.	G	.	.	LowGQX	END=153631246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153631247	.	T	.	.	LowGQX	.	GT	./.
chr1	153631248	.	C	.	.	LowGQX	END=153631337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153631338	.	T	.	.	LowGQX	.	GT	./.
chr1	153631339	.	C	.	.	LowGQX	END=153631383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153631384	.	G	.	.	LowGQX	END=153631397	GT	./.
chr1	153631588	.	C	.	.	LowGQX	END=153631687	GT	./.
chr1	153631922	.	A	.	.	LowGQX	END=153632009	GT	./.
chr1	153632010	.	G	.	.	LowGQX	END=153632044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153633674	.	A	.	.	LowGQX	END=153633779	GT	./.
chr1	153634870	.	T	.	.	LowGQX	END=153634988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153634989	.	T	.	.	LowGQX	END=153635034	GT	./.
chr1	153635177	.	T	.	.	LowGQX	END=153635185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153635186	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	153635187	.	C	.	.	LowGQX	END=153635263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153635264	.	A	.	.	LowGQX	END=153635276	GT	./.
chr1	153635493	.	A	.	.	LowGQX	END=153635611	GT	./.
chr1	153635672	.	A	.	.	LowGQX	END=153635771	GT	./.
chr1	153636513	.	A	.	.	LowGQX	END=153636612	GT	./.
chr1	153636862	.	A	.	.	LowGQX	END=153636961	GT	./.
chr1	153637694	.	A	.	.	LowGQX	END=153637814	GT	./.
chr1	153638035	.	T	.	.	LowGQX	END=153638206	GT	./.
chr1	153639971	.	C	.	.	LowGQX	END=153640135	GT	./.
chr1	153640465	.	C	.	.	LowGQX	END=153640564	GT	./.
chr1	153640872	.	T	.	.	LowGQX	END=153640952	GT	./.
chr1	153640953	.	G	.	.	LowGQX	END=153641035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153642284	.	A	.	.	LowGQX	END=153642383	GT	./.
chr1	153642627	.	T	.	.	LowGQX	END=153642726	GT	./.
chr1	153643347	.	T	.	.	LowGQX	END=153643446	GT	./.
chr1	153651583	.	C	.	.	PASS	END=153651682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	153651683	.	C	.	.	PASS	END=153651781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	153651782	.	G	.	.	PASS	END=153651824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	153651825	.	G	.	.	PASS	END=153651833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr1	153651834	.	A	.	.	PASS	END=153651902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	153651903	.	G	.	.	PASS	END=153651974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:60
chr1	153651975	.	C	.	.	PASS	END=153652072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	153652073	.	C	.	.	PASS	END=153652134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	153652135	.	T	.	.	PASS	END=153652249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	153652250	.	G	.	.	PASS	END=153652312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr1	153652975	.	A	.	.	PASS	END=153653014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	153653015	.	C	.	.	PASS	END=153653142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	153653143	.	T	.	.	PASS	END=153653175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	153653176	.	G	.	.	PASS	END=153653178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	153653654	.	A	.	.	PASS	END=153653747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	153653748	.	C	.	.	PASS	END=153653766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	153653767	.	C	.	.	PASS	END=153653771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	153654178	.	A	.	.	PASS	END=153654198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	153654199	.	C	.	.	PASS	END=153654217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	153654218	.	G	.	.	PASS	END=153654250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	153654251	.	A	.	.	PASS	END=153654299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	153654300	.	A	.	.	PASS	END=153654317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	153654970	.	T	.	.	PASS	END=153655069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	153655850	.	A	.	.	PASS	END=153655875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	153655876	.	T	.	.	PASS	END=153655919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	153655920	.	C	.	.	PASS	END=153655989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	153656209	.	C	.	.	PASS	END=153656298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	153656299	.	A	.	.	PASS	END=153656308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	153657438	.	A	.	.	PASS	END=153657521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	153657522	.	C	.	.	PASS	END=153657552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	153657553	.	T	.	.	PASS	END=153657562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	153658270	.	C	.	.	PASS	END=153658353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	153658354	.	A	.	.	PASS	END=153658369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	153658588	.	T	.	.	PASS	END=153658635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	153658636	.	G	.	.	PASS	END=153658687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	153659120	.	A	.	.	PASS	END=153659164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	153659165	.	C	.	.	PASS	END=153659205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	153659206	.	T	.	.	PASS	END=153659221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	153659222	.	T	.	.	PASS	END=153659228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	153659478	.	T	.	.	PASS	END=153659571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	153659572	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:73:60
chr1	153659573	.	T	.	.	PASS	END=153659577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	153659674	.	A	.	.	PASS	END=153659681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	153659682	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:27:60
chr1	153659683	.	T	.	.	PASS	END=153659704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	153659705	.	C	.	.	PASS	END=153659711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	153659712	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:33:60
chr1	153659713	.	A	.	.	PASS	END=153659760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	153659761	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:60:60
chr1	153659762	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:27:60
chr1	153659763	.	A	.	.	PASS	END=153659792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	153659793	.	A	.	.	PASS	END=153659823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	153659824	.	T	.	.	PASS	END=153659833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	153659834	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:57:60
chr1	153660108	.	A	.	.	PASS	END=153660141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr1	153660142	.	A	.	.	PASS	END=153660253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr1	153660254	.	T	.	.	PASS	END=153660267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	153660527	.	A	.	.	PASS	END=153660557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	153660558	.	C	.	.	PASS	END=153660673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	153660674	.	C	.	.	PASS	END=153660699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	153661427	.	A	.	.	PASS	END=153661461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	153661462	.	G	.	.	PASS	END=153661502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	153661503	.	T	.	.	PASS	END=153661571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	153661572	.	C	.	.	PASS	END=153661577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	153661662	.	A	.	.	PASS	END=153661711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	153661712	.	C	.	.	PASS	END=153661775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	153661776	.	A	.	.	PASS	END=153661789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	153661914	.	T	.	.	PASS	END=153661989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	153661990	.	T	.	.	PASS	END=153662013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	153662280	.	A	.	.	PASS	END=153662308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	153662309	.	G	.	.	PASS	END=153662427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	153662428	.	G	.	.	PASS	END=153662458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	153662758	.	A	.	.	PASS	END=153662837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	153662838	.	G	.	.	PASS	END=153662860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	153665570	.	T	.	.	PASS	END=153665572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	153665573	.	C	.	.	PASS	END=153665616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	153665617	.	G	.	.	PASS	END=153665758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	153665759	.	C	.	.	PASS	END=153665775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	153665810	.	C	.	.	PASS	END=153665893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	153665894	.	G	.	.	PASS	END=153665909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	153701069	.	T	.	.	LowGQX	END=153701264	GT	./.
chr1	153701265	.	G	.	.	LowGQX	END=153701273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153701274	.	G	.	.	LowGQX	.	GT	./.
chr1	153701275	.	A	.	.	LowGQX	END=153701283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153701284	.	A	.	.	LowGQX	.	GT	./.
chr1	153701285	.	G	.	.	LowGQX	END=153701287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153701288	.	A	.	.	LowGQX	.	GT	./.
chr1	153701289	.	A	.	.	LowGQX	END=153701298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153701299	.	T	.	.	LowGQX	END=153701300	GT	./.
chr1	153701301	.	T	.	.	LowGQX	END=153701307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153713119	.	C	.	.	LowGQX	END=153713218	GT	./.
chr1	153713753	.	C	.	.	LowGQX	END=153713852	GT	./.
chr1	153719431	.	A	.	.	LowGQX	.	GT	./.
chr1	153719432	.	G	.	.	LowGQX	END=153719438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153719439	.	C	.	.	LowGQX	.	GT	./.
chr1	153719440	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153719441	.	G	.	.	LowGQX	END=153719548	GT	./.
chr1	153719748	.	C	.	.	LowGQX	END=153719847	GT	./.
chr1	153721149	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153721150	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	153721151	.	C	.	.	LowGQX	END=153721152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153721153	.	T	.	.	LowGQX	END=153721154	GT	./.
chr1	153721155	.	T	.	.	LowGQX	END=153721159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153721160	.	A	.	.	LowGQX	END=153721161	GT	./.
chr1	153721162	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153721163	.	A	.	.	LowGQX	.	GT	./.
chr1	153721164	.	G	.	.	LowGQX	END=153721165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153721166	.	T	.	.	LowGQX	.	GT	./.
chr1	153721167	.	G	.	.	LowGQX	END=153721169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153721170	.	G	.	.	LowGQX	END=153721171	GT	./.
chr1	153721172	.	T	.	.	LowGQX	END=153721174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153721175	.	T	.	.	LowGQX	.	GT	./.
chr1	153721176	.	A	.	.	LowGQX	END=153721188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153721189	.	T	.	.	LowGQX	.	GT	./.
chr1	153721190	.	C	.	.	LowGQX	END=153721193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153721194	.	T	.	.	LowGQX	END=153721195	GT	./.
chr1	153721196	.	G	.	.	LowGQX	END=153721204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153721205	.	T	.	.	LowGQX	.	GT	./.
chr1	153721206	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153721207	.	T	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	153721208	.	T	.	.	LowGQX	END=153721209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153721210	.	T	.	.	LowGQX	.	GT	./.
chr1	153721211	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153721212	.	G	.	.	LowGQX	.	GT	./.
chr1	153721213	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153721214	.	T	.	.	LowGQX	.	GT	./.
chr1	153721215	.	A	.	.	LowGQX	END=153721216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153721217	.	C	.	.	LowGQX	.	GT	./.
chr1	153721218	.	C	.	.	LowGQX	END=153721219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153721220	.	G	.	.	LowGQX	END=153721248	GT	./.
chr1	153723569	.	A	.	.	LowGQX	END=153723717	GT	./.
chr1	153724703	.	A	.	.	LowGQX	END=153724705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153724706	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153724707	.	C	.	.	LowGQX	.	GT	./.
chr1	153724708	.	A	.	.	LowGQX	END=153724719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153724720	.	T	.	.	LowGQX	END=153724721	GT	./.
chr1	153724722	.	T	.	.	LowGQX	END=153724729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153724730	.	C	.	.	LowGQX	.	GT	./.
chr1	153724731	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153724732	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153724733	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153724734	.	C	.	.	LowGQX	.	GT	./.
chr1	153724735	.	A	.	.	LowGQX	END=153724744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153724745	.	C	.	.	LowGQX	END=153724746	GT	./.
chr1	153724747	.	C	.	.	LowGQX	END=153724754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153724755	.	T	.	.	LowGQX	.	GT	./.
chr1	153724756	.	T	.	.	LowGQX	END=153724757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153724758	.	A	.	.	LowGQX	.	GT	./.
chr1	153724759	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153724760	.	G	.	.	LowGQX	END=153724764	GT	./.
chr1	153724765	.	G	.	.	LowGQX	END=153724766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153724767	.	C	.	.	LowGQX	.	GT	./.
chr1	153724768	.	T	.	.	LowGQX	END=153724775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153724776	.	G	.	.	LowGQX	END=153724780	GT	./.
chr1	153724781	.	G	.	.	LowGQX	END=153724783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153724784	.	T	.	.	LowGQX	.	GT	./.
chr1	153724785	.	C	.	.	LowGQX	END=153724787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153724788	.	G	.	.	LowGQX	.	GT	./.
chr1	153724789	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153724790	.	A	.	.	LowGQX	.	GT	./.
chr1	153724791	.	A	.	.	LowGQX	END=153724792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153724793	.	A	.	.	LowGQX	.	GT	./.
chr1	153724794	.	C	.	.	LowGQX	END=153724804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153724805	.	T	.	.	LowGQX	.	GT	./.
chr1	153724806	.	G	.	.	LowGQX	END=153724809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153724810	.	C	.	.	LowGQX	.	GT	./.
chr1	153724811	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153724812	.	A	.	.	LowGQX	.	GT	./.
chr1	153724813	.	G	.	.	LowGQX	END=153724817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153724818	.	C	.	.	LowGQX	END=153724819	GT	./.
chr1	153724820	.	A	.	.	LowGQX	END=153724821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153724822	.	A	.	.	LowGQX	.	GT	./.
chr1	153724823	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153724824	.	T	.	.	LowGQX	END=153724886	GT	./.
chr1	153727116	.	A	.	.	LowGQX	END=153727217	GT	./.
chr1	153730046	.	A	.	.	LowGQX	END=153730049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153730050	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	153730051	.	C	.	.	LowGQX	END=153730090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153730091	.	G	.	.	LowGQX	.	GT	./.
chr1	153730092	.	C	.	.	LowGQX	END=153730152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153730153	.	G	.	.	LowGQX	.	GT	./.
chr1	153730154	.	G	.	.	LowGQX	END=153730241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153731996	.	T	.	.	LowGQX	END=153732095	GT	./.
chr1	153732777	.	C	.	.	LowGQX	END=153732780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153732781	.	C	.	.	LowGQX	.	GT	./.
chr1	153732782	.	T	.	.	LowGQX	END=153732783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153732784	.	C	.	.	LowGQX	.	GT	./.
chr1	153732785	.	A	.	.	LowGQX	END=153732786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153732787	.	A	.	.	LowGQX	END=153732789	GT	./.
chr1	153732790	.	C	.	.	LowGQX	END=153732791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153732792	.	G	.	.	LowGQX	.	GT	./.
chr1	153732793	.	C	.	.	LowGQX	END=153732799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153732800	.	G	.	.	LowGQX	.	GT	./.
chr1	153732801	.	G	.	.	LowGQX	END=153732812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153732813	.	T	.	.	LowGQX	.	GT	./.
chr1	153732814	.	C	.	.	LowGQX	END=153732819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153732820	.	A	.	.	LowGQX	END=153732876	GT	./.
chr1	153733299	.	C	.	.	LowGQX	END=153733302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153733303	.	A	.	.	LowGQX	.	GT	./.
chr1	153733304	.	T	.	.	LowGQX	END=153733328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153733329	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153733330	.	G	.	.	LowGQX	END=153733355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153733356	.	T	.	.	LowGQX	.	GT	./.
chr1	153733357	.	T	.	.	LowGQX	END=153733370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153733371	.	C	.	.	LowGQX	.	GT	./.
chr1	153733372	.	A	.	.	LowGQX	END=153733398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	153734044	.	A	.	.	LowGQX	END=153734047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153734048	.	A	.	.	LowGQX	.	GT	./.
chr1	153734049	.	C	.	.	LowGQX	END=153734063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153734064	.	T	.	.	LowGQX	END=153734065	GT	./.
chr1	153734066	.	A	.	.	LowGQX	END=153734068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153734069	.	A	.	.	LowGQX	.	GT	./.
chr1	153734070	.	C	.	.	LowGQX	END=153734075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153734076	.	G	.	.	LowGQX	.	GT	./.
chr1	153734077	.	T	.	.	LowGQX	END=153734092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153734093	.	G	.	.	LowGQX	.	GT	./.
chr1	153734094	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153734095	.	G	.	.	LowGQX	.	GT	./.
chr1	153734096	.	C	.	.	LowGQX	END=153734133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153734134	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	153734135	.	C	.	.	LowGQX	END=153734154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	153735202	.	A	.	.	LowGQX	END=153735325	GT	./.
chr1	153735707	.	A	.	.	LowGQX	END=153735840	GT	./.
chr1	153736286	.	T	.	.	LowGQX	END=153736385	GT	./.
chr1	153736592	.	A	.	.	LowGQX	END=153736699	GT	./.
chr1	153737139	.	T	.	.	LowGQX	END=153737238	GT	./.
chr1	153737418	.	A	.	.	LowGQX	END=153737541	GT	./.
chr1	153740148	.	A	.	.	LowGQX	END=153740305	GT	./.
chr1	153741354	.	T	.	.	LowGQX	END=153741453	GT	./.
chr1	153742233	.	C	.	.	LowGQX	END=153742332	GT	./.
chr1	153742672	.	A	.	.	LowGQX	END=153742789	GT	./.
chr1	153743136	.	A	.	.	LowGQX	END=153743171	GT	./.
chr1	153743172	.	G	.	.	LowGQX	END=153743178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153743179	.	C	.	.	LowGQX	.	GT	./.
chr1	153743180	.	C	.	.	LowGQX	END=153743190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153743191	.	T	.	.	LowGQX	.	GT	./.
chr1	153743192	.	T	.	.	LowGQX	END=153743197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153743198	.	C	.	.	LowGQX	.	GT	./.
chr1	153743199	.	C	.	.	LowGQX	END=153743209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153743210	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	153743211	.	T	.	.	LowGQX	END=153743233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153743234	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	153743235	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153744270	.	A	.	.	LowGQX	END=153744441	GT	./.
chr1	153744814	.	A	.	.	LowGQX	END=153745097	GT	./.
chr1	153745098	.	C	.	.	LowGQX	END=153745100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745101	.	T	.	.	LowGQX	.	GT	./.
chr1	153745102	.	T	.	.	LowGQX	END=153745177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745178	.	A	.	.	LowGQX	.	GT	./.
chr1	153745179	.	C	.	.	LowGQX	END=153745189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745399	.	A	.	.	LowGQX	END=153745437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153745438	.	G	.	.	LowGQX	.	GT	./.
chr1	153745439	.	A	.	.	LowGQX	END=153745488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745489	.	C	.	.	LowGQX	END=153745551	GT	./.
chr1	153745552	.	G	.	.	LowGQX	END=153745555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745556	.	C	.	.	LowGQX	.	GT	./.
chr1	153745557	.	A	.	.	LowGQX	END=153745558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745559	.	T	.	.	LowGQX	.	GT	./.
chr1	153745658	.	A	.	.	LowGQX	END=153745662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745663	.	T	.	.	LowGQX	.	GT	./.
chr1	153745664	.	T	.	.	LowGQX	END=153745665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745666	.	C	.	.	LowGQX	.	GT	./.
chr1	153745667	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745668	.	G	.	.	LowGQX	.	GT	./.
chr1	153745669	.	G	.	.	LowGQX	END=153745670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745671	.	A	.	.	LowGQX	.	GT	./.
chr1	153745672	.	G	.	.	LowGQX	END=153745673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745674	.	G	.	.	LowGQX	END=153745675	GT	./.
chr1	153745676	.	A	.	.	LowGQX	END=153745677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745678	.	G	.	.	LowGQX	.	GT	./.
chr1	153745679	.	A	.	.	LowGQX	END=153745685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153745686	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153745687	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153745688	.	C	.	.	LowGQX	END=153745708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745709	.	G	.	.	LowGQX	.	GT	./.
chr1	153745710	.	A	.	.	LowGQX	END=153745714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745715	.	G	.	.	LowGQX	.	GT	./.
chr1	153745716	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745717	.	T	.	.	LowGQX	.	GT	./.
chr1	153745718	.	C	.	.	LowGQX	END=153745719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745720	.	T	.	.	LowGQX	END=153745721	GT	./.
chr1	153745722	.	T	.	.	LowGQX	END=153745723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745724	.	C	.	.	LowGQX	.	GT	./.
chr1	153745725	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745726	.	G	.	.	LowGQX	.	GT	./.
chr1	153745727	.	T	.	.	LowGQX	END=153745728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745729	.	G	.	.	LowGQX	.	GT	./.
chr1	153745730	.	G	.	.	LowGQX	END=153745731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745732	.	T	.	.	LowGQX	.	GT	./.
chr1	153745733	.	C	.	.	LowGQX	END=153745739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745740	.	T	.	.	LowGQX	END=153745742	GT	./.
chr1	153745743	.	C	.	.	LowGQX	END=153745745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153745746	.	A	.	.	LowGQX	.	GT	./.
chr1	153745747	.	G	.	.	LowGQX	END=153745757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747578	.	G	.	.	LowGQX	END=153747672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153747673	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	153747674	.	C	.	.	LowGQX	END=153747675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	153747676	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	153747677	.	G	.	.	LowGQX	END=153747679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	153747680	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	153747681	.	G	.	.	LowGQX	END=153747683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	153747684	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	153747685	.	G	.	.	LowGQX	END=153747686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747687	.	G	.	.	LowGQX	.	GT	./.
chr1	153747688	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747689	.	G	.	.	LowGQX	.	GT	./.
chr1	153747690	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747691	.	C	.	.	LowGQX	.	GT	./.
chr1	153747692	.	G	.	.	LowGQX	END=153747694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747695	.	A	.	.	LowGQX	.	GT	./.
chr1	153747696	.	G	.	.	LowGQX	END=153747699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747700	.	T	.	.	LowGQX	.	GT	./.
chr1	153747701	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747702	.	C	.	.	LowGQX	.	GT	./.
chr1	153747703	.	G	.	.	LowGQX	END=153747705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747706	.	A	.	.	LowGQX	.	GT	./.
chr1	153747707	.	G	.	.	LowGQX	END=153747708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747709	.	G	.	.	LowGQX	END=153747710	GT	./.
chr1	153747711	.	G	.	.	LowGQX	END=153747714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747715	.	G	.	.	LowGQX	.	GT	./.
chr1	153747716	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747717	.	C	.	.	LowGQX	.	GT	./.
chr1	153747718	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747719	.	A	.	.	LowGQX	.	GT	./.
chr1	153747720	.	G	.	.	LowGQX	END=153747721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747722	.	G	.	.	LowGQX	.	GT	./.
chr1	153747723	.	C	.	.	LowGQX	END=153747724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747725	.	G	.	.	LowGQX	END=153747726	GT	./.
chr1	153747727	.	G	.	.	LowGQX	END=153747729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747730	.	T	.	.	LowGQX	END=153747731	GT	./.
chr1	153747732	.	G	.	.	LowGQX	END=153747733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747734	.	C	.	.	LowGQX	END=153747735	GT	./.
chr1	153747736	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747737	.	T	.	.	LowGQX	.	GT	./.
chr1	153747738	.	G	.	.	LowGQX	END=153747742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747743	.	G	.	.	LowGQX	END=153747744	GT	./.
chr1	153747745	.	G	.	.	LowGQX	END=153747747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747748	.	C	.	.	LowGQX	END=153747749	GT	./.
chr1	153747750	.	G	.	.	LowGQX	END=153747751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747752	.	G	.	.	LowGQX	END=153747753	GT	./.
chr1	153747754	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747755	.	T	.	.	LowGQX	.	GT	./.
chr1	153747756	.	C	.	.	LowGQX	END=153747759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747760	.	G	.	.	LowGQX	.	GT	./.
chr1	153747761	.	G	.	.	LowGQX	END=153747810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153747811	.	A	.	.	LowGQX	END=153748642	GT	./.
chr1	153748992	.	A	.	.	LowGQX	END=153749205	GT	./.
chr1	153749536	.	A	.	.	LowGQX	END=153749698	GT	./.
chr1	153750235	.	A	.	.	LowGQX	END=153750242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153750243	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153750244	.	A	.	.	LowGQX	END=153750246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153750247	.	G	.	.	LowGQX	.	GT	./.
chr1	153750248	.	G	.	.	LowGQX	END=153750256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	153750257	.	T	.	.	LowGQX	.	GT	./.
chr1	153750258	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153750259	.	C	.	.	LowGQX	.	GT	./.
chr1	153750260	.	A	.	.	LowGQX	END=153750263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153750264	.	T	.	.	LowGQX	.	GT	./.
chr1	153750265	.	C	.	.	LowGQX	END=153750272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153750273	.	G	.	.	LowGQX	END=153750274	GT	./.
chr1	153750275	.	C	.	.	LowGQX	END=153750313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153750314	.	T	.	.	LowGQX	.	GT	./.
chr1	153750315	.	T	.	.	LowGQX	END=153750316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153750317	.	C	.	.	LowGQX	.	GT	./.
chr1	153750318	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153750319	.	G	.	.	LowGQX	.	GT	./.
chr1	153750320	.	T	.	.	LowGQX	END=153750327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153750328	.	G	.	.	LowGQX	.	GT	./.
chr1	153750329	.	G	.	.	LowGQX	END=153750333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153750334	.	G	.	.	LowGQX	.	GT	./.
chr1	153750335	.	T	.	.	LowGQX	END=153750337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153750338	.	C	.	.	LowGQX	.	GT	./.
chr1	153750339	.	G	.	.	LowGQX	END=153750345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153750346	.	T	.	.	LowGQX	.	GT	./.
chr1	153750347	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153750348	.	T	.	.	LowGQX	.	GT	./.
chr1	153750349	.	C	.	.	LowGQX	END=153750358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153750359	.	C	.	.	LowGQX	.	GT	./.
chr1	153750360	.	C	.	.	LowGQX	END=153750362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153750363	.	T	.	.	LowGQX	.	GT	./.
chr1	153750635	.	A	.	.	LowGQX	END=153750710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153750711	.	T	.	.	LowGQX	.	GT	./.
chr1	153750712	.	G	.	.	LowGQX	END=153750746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153750747	.	A	.	.	LowGQX	END=153750833	GT	./.
chr1	153750935	.	C	.	.	LowGQX	END=153751034	GT	./.
chr1	153751161	.	A	.	.	LowGQX	END=153751180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153751181	.	T	.	.	LowGQX	.	GT	./.
chr1	153751182	.	G	.	.	LowGQX	END=153751187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153751188	.	G	.	.	LowGQX	.	GT	./.
chr1	153751189	.	G	.	.	LowGQX	END=153751194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153751195	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153751196	.	A	.	.	LowGQX	END=153751203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153751204	.	C	.	.	LowGQX	.	GT	./.
chr1	153751205	.	C	.	.	LowGQX	END=153751207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153751208	.	T	.	.	LowGQX	.	GT	./.
chr1	153751209	.	C	.	.	LowGQX	END=153751216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153751217	.	A	.	.	LowGQX	.	GT	./.
chr1	153751218	.	T	.	.	LowGQX	END=153751227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153751228	.	C	.	.	LowGQX	.	GT	./.
chr1	153751229	.	C	.	.	LowGQX	END=153751239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153751240	.	C	.	.	LowGQX	.	GT	./.
chr1	153751241	.	A	.	.	LowGQX	END=153751264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153751265	.	T	.	.	LowGQX	.	GT	./.
chr1	153751266	.	C	.	.	LowGQX	END=153751302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153751303	.	C	.	.	LowGQX	.	GT	./.
chr1	153751304	.	T	.	.	LowGQX	END=153751306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153751307	.	T	.	.	LowGQX	END=153751363	GT	./.
chr1	153751588	.	A	.	.	LowGQX	END=153751689	GT	./.
chr1	153751817	.	A	.	.	LowGQX	END=153751951	GT	./.
chr1	153752300	.	A	.	.	LowGQX	END=153752480	GT	./.
chr1	153782611	.	G	.	.	LowGQX	END=153782634	GT	./.
chr1	153782635	.	G	.	.	LowGQX	END=153782840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153784135	.	G	.	.	LowGQX	END=153784160	GT	./.
chr1	153784161	.	C	.	.	LowGQX	END=153784316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153784317	.	T	.	.	LowGQX	.	GT	./.
chr1	153784318	.	G	.	.	LowGQX	END=153784326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153784496	.	A	.	.	LowGQX	END=153784610	GT	./.
chr1	153785724	.	A	.	.	LowGQX	END=153785930	GT	./.
chr1	153788747	.	A	.	.	LowGQX	END=153789066	GT	./.
chr1	153789846	.	A	.	.	LowGQX	END=153789973	GT	./.
chr1	153789974	.	G	.	.	LowGQX	END=153790020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153790514	.	A	.	.	LowGQX	END=153790649	GT	./.
chr1	153791265	.	A	.	.	LowGQX	END=153791272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	153791273	.	G	.	.	LowGQX	.	GT	./.
chr1	153791274	.	A	.	.	LowGQX	END=153791329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153791330	.	G	.	.	LowGQX	.	GT	./.
chr1	153791331	.	G	.	.	LowGQX	END=153791332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153791333	.	T	.	.	LowGQX	.	GT	./.
chr1	153791334	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153791335	.	C	.	.	LowGQX	.	GT	./.
chr1	153791336	.	T	.	.	LowGQX	END=153791338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153791339	.	C	.	.	LowGQX	.	GT	./.
chr1	153791340	.	A	.	.	LowGQX	END=153791345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153791346	.	A	.	.	LowGQX	.	GT	./.
chr1	153791347	.	G	.	.	LowGQX	END=153791357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153791358	.	A	.	.	LowGQX	.	GT	./.
chr1	153791359	.	G	.	.	LowGQX	END=153791364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153791365	.	T	.	.	LowGQX	.	GT	./.
chr1	153791366	.	G	.	.	LowGQX	END=153791375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153791376	.	T	.	.	LowGQX	.	GT	./.
chr1	153791377	.	G	.	.	LowGQX	END=153791381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153791382	.	T	.	.	LowGQX	.	GT	./.
chr1	153791383	.	C	.	.	LowGQX	END=153791384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153791385	.	T	.	.	LowGQX	.	GT	./.
chr1	153791386	.	C	.	.	LowGQX	END=153791387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153791388	.	A	.	.	LowGQX	.	GT	./.
chr1	153791389	.	T	.	.	LowGQX	END=153791392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153791393	.	T	.	.	LowGQX	END=153791394	GT	./.
chr1	153791395	.	T	.	.	LowGQX	END=153791398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153791399	.	C	.	.	LowGQX	END=153791400	GT	./.
chr1	153792080	.	A	.	.	LowGQX	END=153792213	GT	./.
chr1	153800487	.	A	.	.	LowGQX	END=153800525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153800526	.	T	.	.	LowGQX	.	GT	./.
chr1	153800527	.	G	.	.	LowGQX	END=153800535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153800536	.	G	.	.	LowGQX	.	GT	./.
chr1	153800537	.	C	.	.	LowGQX	END=153800556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153800557	.	G	.	.	LowGQX	.	GT	./.
chr1	153800558	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153800559	.	T	.	.	LowGQX	.	GT	./.
chr1	153800560	.	G	.	.	LowGQX	END=153800578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153800579	.	T	.	.	LowGQX	.	GT	./.
chr1	153800580	.	T	.	.	LowGQX	END=153800592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153800593	.	T	.	.	LowGQX	END=153800601	GT	./.
chr1	153800602	.	G	.	.	LowGQX	END=153800776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153800777	.	C	.	.	LowGQX	END=153800825	GT	./.
chr1	153902772	.	T	.	.	LowGQX	END=153902801	GT	./.
chr1	153902802	.	T	.	.	LowGQX	END=153902805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902806	.	G	.	.	LowGQX	END=153902807	GT	./.
chr1	153902808	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902809	.	G	.	.	LowGQX	END=153902810	GT	./.
chr1	153902811	.	C	.	.	LowGQX	END=153902812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902813	.	A	.	.	LowGQX	.	GT	./.
chr1	153902814	.	T	.	.	LowGQX	END=153902815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902816	.	G	.	.	LowGQX	.	GT	./.
chr1	153902817	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902818	.	C	.	.	LowGQX	END=153902819	GT	./.
chr1	153902820	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902821	.	G	.	.	LowGQX	END=153902825	GT	./.
chr1	153902826	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902827	.	G	.	.	LowGQX	END=153902828	GT	./.
chr1	153902829	.	G	.	.	LowGQX	END=153902834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902835	.	G	.	.	LowGQX	.	GT	./.
chr1	153902836	.	C	.	.	LowGQX	END=153902839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902840	.	C	.	.	LowGQX	.	GT	./.
chr1	153902841	.	G	.	.	LowGQX	END=153902843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902844	.	G	.	.	LowGQX	.	GT	./.
chr1	153902845	.	G	.	.	LowGQX	END=153902847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902848	.	C	.	.	LowGQX	END=153902849	GT	./.
chr1	153902850	.	T	.	.	LowGQX	END=153902855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902856	.	C	.	.	LowGQX	END=153902857	GT	./.
chr1	153902858	.	T	.	.	LowGQX	END=153902862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902863	.	G	.	.	LowGQX	.	GT	./.
chr1	153902864	.	C	.	.	LowGQX	END=153902876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902877	.	C	.	.	LowGQX	.	GT	./.
chr1	153902878	.	C	.	.	LowGQX	END=153902880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902881	.	C	.	.	LowGQX	.	GT	./.
chr1	153902882	.	T	.	.	LowGQX	END=153902883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902884	.	G	.	.	LowGQX	.	GT	./.
chr1	153902885	.	T	.	.	LowGQX	END=153902889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902890	.	G	.	.	LowGQX	END=153902892	GT	./.
chr1	153902893	.	A	.	.	LowGQX	END=153902895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902896	.	C	.	.	LowGQX	.	GT	./.
chr1	153902897	.	T	.	.	LowGQX	END=153902898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902899	.	G	.	.	LowGQX	.	GT	./.
chr1	153902900	.	T	.	.	LowGQX	END=153902910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902911	.	G	.	.	LowGQX	.	GT	./.
chr1	153902912	.	A	.	.	LowGQX	END=153902913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902914	.	G	.	.	LowGQX	.	GT	./.
chr1	153902915	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902916	.	C	.	.	LowGQX	.	GT	./.
chr1	153902917	.	C	.	.	LowGQX	END=153902918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153902997	.	C	.	.	LowGQX	END=153903096	GT	./.
chr1	153903167	.	C	.	.	LowGQX	END=153903305	GT	./.
chr1	153903306	.	G	.	.	LowGQX	END=153903333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153903381	.	A	.	.	LowGQX	END=153903429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153903430	.	C	.	.	LowGQX	END=153903500	GT	./.
chr1	153903501	.	G	.	.	LowGQX	END=153903510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153903511	.	T	.	.	LowGQX	.	GT	./.
chr1	153903512	.	G	.	.	LowGQX	END=153903560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153903561	.	G	.	.	LowGQX	.	GT	./.
chr1	153903562	.	A	.	.	LowGQX	END=153903569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153903570	.	A	.	.	LowGQX	.	GT	./.
chr1	153903571	.	G	.	.	LowGQX	END=153903591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153904679	.	C	.	.	LowGQX	END=153904720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153904721	.	C	.	.	LowGQX	END=153904916	GT	./.
chr1	153905117	.	C	.	.	LowGQX	END=153905145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905146	.	T	.	.	LowGQX	.	GT	./.
chr1	153905147	.	C	.	.	LowGQX	END=153905164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905165	.	G	.	.	LowGQX	.	GT	./.
chr1	153905166	.	C	.	.	LowGQX	END=153905167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905168	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153905169	.	T	.	.	LowGQX	END=153905207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153905208	.	A	.	.	LowGQX	.	GT	./.
chr1	153905209	.	G	.	.	LowGQX	END=153905210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905211	.	A	.	.	LowGQX	.	GT	./.
chr1	153905212	.	T	.	.	LowGQX	END=153905215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905216	.	T	.	.	LowGQX	.	GT	./.
chr1	153905217	.	G	.	.	LowGQX	END=153905219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905220	.	G	.	.	LowGQX	.	GT	./.
chr1	153905221	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905222	.	C	.	.	LowGQX	END=153905223	GT	./.
chr1	153905224	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905225	.	T	.	.	LowGQX	.	GT	./.
chr1	153905226	.	G	.	.	LowGQX	END=153905228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905229	.	A	.	.	LowGQX	.	GT	./.
chr1	153905230	.	C	.	.	LowGQX	END=153905231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905232	.	A	.	.	LowGQX	.	GT	./.
chr1	153905233	.	G	.	.	LowGQX	END=153905236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905237	.	A	.	.	LowGQX	END=153905238	GT	./.
chr1	153905239	.	T	.	.	LowGQX	END=153905253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905336	.	C	.	.	LowGQX	.	GT	./.
chr1	153905337	.	C	.	.	LowGQX	END=153905347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905348	.	A	.	.	LowGQX	.	GT	./.
chr1	153905349	.	T	.	.	LowGQX	END=153905360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905361	.	A	.	.	LowGQX	.	GT	./.
chr1	153905362	.	C	.	.	LowGQX	END=153905396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905397	.	G	.	.	LowGQX	.	GT	./.
chr1	153905398	.	G	.	.	LowGQX	END=153905421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905422	.	C	.	.	LowGQX	.	GT	./.
chr1	153905423	.	A	.	.	LowGQX	END=153905429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905430	.	G	.	.	LowGQX	.	GT	./.
chr1	153905431	.	C	.	.	LowGQX	END=153905432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905433	.	C	.	.	LowGQX	.	GT	./.
chr1	153905434	.	A	.	.	LowGQX	END=153905435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905436	.	C	.	.	LowGQX	.	GT	./.
chr1	153905437	.	C	.	.	LowGQX	END=153905438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905439	.	G	.	.	LowGQX	.	GT	./.
chr1	153905440	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905441	.	C	.	.	LowGQX	.	GT	./.
chr1	153905442	.	A	.	.	LowGQX	END=153905460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905461	.	C	.	.	LowGQX	.	GT	./.
chr1	153905462	.	C	.	.	LowGQX	END=153905466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905467	.	A	.	.	LowGQX	.	GT	./.
chr1	153905468	.	A	.	.	LowGQX	END=153905506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905672	.	C	.	.	LowGQX	END=153905702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153905703	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	153905704	.	G	.	.	LowGQX	END=153905760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153905761	.	G	.	.	LowGQX	.	GT	./.
chr1	153905762	.	A	.	.	LowGQX	END=153905764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153905765	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153905766	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153905767	.	T	.	.	LowGQX	.	GT	./.
chr1	153905768	.	C	.	.	LowGQX	END=153905788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905789	.	C	.	.	LowGQX	.	GT	./.
chr1	153905790	.	T	.	.	LowGQX	END=153905791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905792	.	A	.	.	LowGQX	.	GT	./.
chr1	153905793	.	G	.	.	LowGQX	END=153905795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905948	.	T	.	.	LowGQX	END=153905974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153905975	.	C	.	.	LowGQX	END=153906003	GT	./.
chr1	153906004	.	G	.	.	LowGQX	END=153906062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153906063	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153906064	.	G	.	.	LowGQX	END=153906068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153906069	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153906070	.	G	.	.	LowGQX	END=153906134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153906135	.	T	.	.	LowGQX	END=153906347	GT	./.
chr1	153906610	.	C	.	.	LowGQX	END=153906799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153907235	.	C	.	.	PASS	END=153907266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	153907267	.	T	.	.	PASS	END=153907268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	153907269	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:36:60
chr1	153907270	.	C	.	.	PASS	END=153907278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	153907278	.	CCTGCTGCTG	C	937.73	PASS	BaseQRankSum=-2.556;DP=27;FS=0.000;HRun=0;HaplotypeScore=35.1190;MQ=60;MQ0=0;MQRankSum=-0.184;QD=34.73;ReadPosRankSum=0.870;SB=-207.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:16,9:27:99:977,0,1452:60:99:0.360
chr1	153907279	.	C	.	66.11	PASS	DP=27;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:16:16:36.12:60:36
chr1	153907280	.	T	.	69.12	PASS	DP=27;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:16:16:39.13:60:39
chr1	153907281	.	G	.	69.12	PASS	DP=28;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:17:17:39.13:60:39
chr1	153907282	.	C	.	75.14	PASS	DP=29;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:20:20:45.14:60:45
chr1	153907283	.	T	.	72.13	PASS	DP=29;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:20:20:42.14:60:42
chr1	153907284	.	G	.	69.12	PASS	DP=29;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:20:20:39.13:60:39
chr1	153907285	.	C	.	75.14	PASS	DP=29;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:20:20:45.14:60:45
chr1	153907286	.	T	.	75.14	PASS	DP=29;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:20:20:45.15:60:45
chr1	153907287	.	G	.	72.13	PASS	DP=29;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:19:20:42.14:60:42
chr1	153907288	.	C	.	.	PASS	END=153907332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:60
chr1	153907333	.	T	.	.	PASS	END=153907349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:60
chr1	153907350	.	A	.	.	PASS	END=153907358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	153907359	.	C	.	.	PASS	END=153907369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	153907370	.	A	.	.	PASS	END=153907374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	153907375	.	C	.	.	PASS	END=153907392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	153907393	.	C	.	.	PASS	END=153907395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	153907396	.	A	.	.	PASS	END=153907407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	153907408	.	T	.	.	PASS	END=153907411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	153907412	.	C	.	.	PASS	END=153907429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	153907430	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	153907431	.	C	.	.	PASS	END=153907432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	153907433	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	153907434	.	A	.	.	PASS	END=153907437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	153907438	.	A	.	.	LowGQX	END=153907440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	153908535	.	C	.	.	LowGQX	END=153908560	GT	./.
chr1	153908561	.	G	.	.	LowGQX	END=153908599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153908600	.	A	.	.	LowGQX	.	GT	./.
chr1	153908601	.	C	.	.	LowGQX	END=153908664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153909017	.	C	.	.	LowGQX	END=153909043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153909044	.	T	.	.	LowGQX	.	GT	./.
chr1	153909045	.	C	.	.	LowGQX	END=153909071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153909072	.	T	.	.	LowGQX	END=153909224	GT	./.
chr1	153909963	.	C	.	.	LowGQX	END=153910090	GT	./.
chr1	153910199	.	C	.	.	LowGQX	END=153910200	GT	./.
chr1	153910201	.	A	.	.	LowGQX	END=153910203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910204	.	A	.	.	LowGQX	.	GT	./.
chr1	153910205	.	C	.	.	LowGQX	END=153910206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910207	.	G	.	.	LowGQX	END=153910209	GT	./.
chr1	153910210	.	G	.	.	LowGQX	END=153910211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910212	.	G	.	.	LowGQX	.	GT	./.
chr1	153910213	.	T	.	.	LowGQX	END=153910217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910218	.	T	.	.	LowGQX	END=153910219	GT	./.
chr1	153910220	.	A	.	.	LowGQX	END=153910223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910224	.	C	.	.	LowGQX	END=153910225	GT	./.
chr1	153910226	.	C	.	.	LowGQX	END=153910229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910230	.	G	.	.	LowGQX	.	GT	./.
chr1	153910231	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910232	.	T	.	.	LowGQX	.	GT	./.
chr1	153910233	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910234	.	A	.	.	LowGQX	END=153910236	GT	./.
chr1	153910237	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910238	.	A	.	.	LowGQX	END=153910240	GT	./.
chr1	153910241	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910242	.	T	.	.	LowGQX	.	GT	./.
chr1	153910243	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910244	.	C	.	.	LowGQX	END=153910247	GT	./.
chr1	153910248	.	G	.	.	LowGQX	END=153910250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910251	.	G	.	.	LowGQX	.	GT	./.
chr1	153910252	.	G	.	.	LowGQX	END=153910253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910254	.	G	.	.	LowGQX	.	GT	./.
chr1	153910255	.	T	.	.	LowGQX	END=153910257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910258	.	T	.	.	LowGQX	.	GT	./.
chr1	153910259	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910260	.	A	.	.	LowGQX	.	GT	./.
chr1	153910261	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910262	.	G	.	.	LowGQX	END=153910264	GT	./.
chr1	153910265	.	A	.	.	LowGQX	END=153910268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910269	.	A	.	.	LowGQX	.	GT	./.
chr1	153910270	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910271	.	C	.	.	LowGQX	.	GT	./.
chr1	153910272	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910273	.	C	.	.	LowGQX	END=153910276	GT	./.
chr1	153910277	.	T	.	.	LowGQX	END=153910278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910279	.	C	.	.	LowGQX	.	GT	./.
chr1	153910280	.	T	.	.	LowGQX	END=153910281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153910282	.	A	.	.	LowGQX	END=153910324	GT	./.
chr1	153910325	.	C	.	.	LowGQX	END=153910339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153911375	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153911376	.	C	.	.	LowGQX	END=153911478	GT	./.
chr1	153911479	.	G	.	.	LowGQX	END=153911493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153911494	.	C	.	.	LowGQX	.	GT	./.
chr1	153911495	.	T	.	.	LowGQX	END=153911497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153911498	.	A	.	.	LowGQX	.	GT	./.
chr1	153911499	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153911500	.	C	.	.	LowGQX	.	GT	./.
chr1	153911501	.	G	.	.	LowGQX	END=153911505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153911506	.	C	.	.	LowGQX	.	GT	./.
chr1	153911507	.	G	.	.	LowGQX	END=153911511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153911512	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153911513	.	T	.	.	LowGQX	END=153911518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153911519	.	A	.	.	LowGQX	.	GT	./.
chr1	153911520	.	G	.	.	LowGQX	END=153911521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153912064	.	C	.	.	LowGQX	END=153912087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153912088	.	A	.	.	LowGQX	.	GT	./.
chr1	153912089	.	C	.	.	LowGQX	END=153912095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153912096	.	A	.	.	LowGQX	.	GT	./.
chr1	153912097	.	G	.	.	LowGQX	END=153912126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153912127	.	C	.	.	LowGQX	.	GT	./.
chr1	153912128	.	G	.	.	LowGQX	END=153912132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153912133	.	A	.	.	LowGQX	.	GT	./.
chr1	153912134	.	A	.	.	LowGQX	END=153912135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153912136	.	A	.	.	LowGQX	.	GT	./.
chr1	153912137	.	C	.	.	LowGQX	END=153912142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153912143	.	A	.	.	LowGQX	.	GT	./.
chr1	153912144	.	G	.	.	LowGQX	END=153912149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153912150	.	G	.	.	LowGQX	END=153912186	GT	./.
chr1	153912187	.	A	.	.	LowGQX	END=153912280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153912631	.	C	.	.	LowGQX	END=153912632	GT	./.
chr1	153912633	.	C	.	.	LowGQX	END=153912732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153912906	.	C	.	.	LowGQX	END=153912937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153912938	.	A	.	.	LowGQX	END=153913082	GT	./.
chr1	153913379	.	C	.	.	LowGQX	END=153913524	GT	./.
chr1	153913626	.	C	.	.	LowGQX	END=153913670	GT	./.
chr1	153913671	.	C	.	.	LowGQX	END=153913770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153913771	.	A	.	.	LowGQX	.	GT	./.
chr1	153913772	.	G	.	.	LowGQX	END=153913824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153913825	.	G	.	.	LowGQX	.	GT	./.
chr1	153913826	.	C	.	.	LowGQX	END=153913879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153913880	.	A	.	.	LowGQX	END=153913932	GT	./.
chr1	153914344	.	C	.	.	LowGQX	END=153914352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153914353	.	G	.	.	LowGQX	.	GT	./.
chr1	153914354	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153914355	.	G	.	.	LowGQX	END=153914356	GT	./.
chr1	153914357	.	A	.	.	LowGQX	END=153914358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153914359	.	G	.	.	LowGQX	.	GT	./.
chr1	153914360	.	C	.	.	LowGQX	END=153914364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153914365	.	G	.	.	LowGQX	.	GT	./.
chr1	153914366	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153914367	.	G	.	.	LowGQX	END=153914368	GT	./.
chr1	153914369	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153914370	.	C	.	.	LowGQX	.	GT	./.
chr1	153914371	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153914372	.	G	.	.	LowGQX	.	GT	./.
chr1	153914373	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153914374	.	G	.	.	LowGQX	.	GT	./.
chr1	153914375	.	A	.	.	LowGQX	END=153914377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153914378	.	G	.	.	LowGQX	.	GT	./.
chr1	153914379	.	A	.	.	LowGQX	END=153914382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153914383	.	G	.	.	LowGQX	.	GT	./.
chr1	153914384	.	C	.	.	LowGQX	END=153914385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153914386	.	G	.	.	LowGQX	.	GT	./.
chr1	153914387	.	T	.	.	LowGQX	END=153914397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153914398	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	153914399	.	A	.	.	LowGQX	END=153914403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153914404	.	G	.	.	LowGQX	.	GT	./.
chr1	153914405	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153914406	.	C	.	.	LowGQX	.	GT	./.
chr1	153914407	.	G	.	.	LowGQX	END=153914415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153914416	.	A	.	.	LowGQX	.	GT	./.
chr1	153914417	.	G	.	.	LowGQX	END=153914418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153914419	.	G	.	.	LowGQX	.	GT	./.
chr1	153914420	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153914421	.	A	.	.	LowGQX	.	GT	./.
chr1	153914422	.	G	.	.	LowGQX	END=153914423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153914424	.	C	.	.	LowGQX	END=153914589	GT	./.
chr1	153914632	.	C	.	.	LowGQX	END=153914832	GT	./.
chr1	153914957	.	T	.	.	LowGQX	END=153915020	GT	./.
chr1	153915021	.	G	.	.	LowGQX	END=153915116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153915353	.	C	.	.	LowGQX	END=153915606	GT	./.
chr1	153916533	.	C	.	.	LowGQX	END=153916601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153916602	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153916603	.	A	.	.	LowGQX	END=153916624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916625	.	G	.	.	LowGQX	END=153916669	GT	./.
chr1	153916670	.	C	.	.	LowGQX	END=153916751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916752	.	T	.	.	LowGQX	END=153916753	GT	./.
chr1	153916754	.	C	.	.	LowGQX	END=153916757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916758	.	A	.	.	LowGQX	END=153916759	GT	./.
chr1	153916760	.	C	.	.	LowGQX	END=153916765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916766	.	T	.	.	LowGQX	END=153916767	GT	./.
chr1	153916768	.	T	.	.	LowGQX	END=153916785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916786	.	C	.	.	LowGQX	.	GT	./.
chr1	153916787	.	C	.	.	LowGQX	END=153916796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916797	.	A	.	.	LowGQX	.	GT	./.
chr1	153916798	.	A	.	.	LowGQX	END=153916801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916802	.	C	.	.	LowGQX	.	GT	./.
chr1	153916803	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916804	.	G	.	.	LowGQX	.	GT	./.
chr1	153916805	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916806	.	T	.	.	LowGQX	END=153916807	GT	./.
chr1	153916808	.	C	.	.	LowGQX	END=153916809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916810	.	A	.	.	LowGQX	.	GT	./.
chr1	153916811	.	C	.	.	LowGQX	END=153916815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916816	.	T	.	.	LowGQX	.	GT	./.
chr1	153916817	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916818	.	A	.	.	LowGQX	.	GT	./.
chr1	153916819	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916820	.	C	.	.	LowGQX	END=153916841	GT	./.
chr1	153916842	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916843	.	T	.	.	LowGQX	.	GT	./.
chr1	153916844	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916845	.	C	.	.	LowGQX	.	GT	./.
chr1	153916846	.	G	.	.	LowGQX	END=153916847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916848	.	C	.	.	LowGQX	.	GT	./.
chr1	153916849	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916850	.	T	.	.	LowGQX	.	GT	./.
chr1	153916851	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916852	.	G	.	.	LowGQX	END=153916854	GT	./.
chr1	153916855	.	C	.	.	LowGQX	END=153916856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916857	.	C	.	.	LowGQX	.	GT	./.
chr1	153916858	.	C	.	.	LowGQX	END=153916862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916863	.	A	.	.	LowGQX	.	GT	./.
chr1	153916864	.	C	.	.	LowGQX	END=153916867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916868	.	C	.	.	LowGQX	.	GT	./.
chr1	153916869	.	T	.	.	LowGQX	END=153916873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153916874	.	C	.	.	LowGQX	END=153916875	GT	./.
chr1	153916876	.	G	.	.	LowGQX	END=153916881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153917566	.	T	.	.	LowGQX	END=153917665	GT	./.
chr1	153920583	.	C	.	.	LowGQX	END=153920807	GT	./.
chr1	153920932	.	A	.	.	LowGQX	END=153921122	GT	./.
chr1	153921323	.	G	.	.	LowGQX	END=153921378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153921379	.	G	.	.	LowGQX	.	GT	./.
chr1	153921380	.	A	.	.	LowGQX	END=153921389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153921390	.	G	.	.	LowGQX	.	GT	./.
chr1	153921391	.	A	.	.	LowGQX	END=153921392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153921393	.	G	.	.	LowGQX	END=153921422	GT	./.
chr1	153921589	.	A	.	.	LowGQX	END=153921601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153921602	.	T	.	.	LowGQX	.	GT	./.
chr1	153921603	.	G	.	.	LowGQX	END=153921604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153921605	.	A	.	.	LowGQX	.	GT	./.
chr1	153921606	.	G	.	.	LowGQX	END=153921621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153921622	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153921623	.	G	.	.	LowGQX	END=153921665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153921666	.	T	.	.	LowGQX	.	GT	./.
chr1	153921667	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153921668	.	T	.	.	LowGQX	.	GT	./.
chr1	153921669	.	C	.	.	LowGQX	END=153921711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153921712	.	T	.	.	LowGQX	END=153921862	GT	./.
chr1	153923723	.	C	.	.	LowGQX	END=153923725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153923726	.	C	.	.	LowGQX	.	GT	./.
chr1	153923727	.	C	.	.	LowGQX	END=153923729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153923730	.	G	.	5.68	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr1	153923731	.	C	.	.	LowGQX	END=153923738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153923739	.	A	.	.	LowGQX	END=153923915	GT	./.
chr1	153923916	.	A	.	.	LowGQX	END=153923942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153923943	.	G	.	.	LowGQX	.	GT	./.
chr1	153923944	.	G	.	.	LowGQX	END=153923953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153923954	.	C	.	.	LowGQX	.	GT	./.
chr1	153923955	.	C	.	.	LowGQX	END=153923961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153923962	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153923963	.	T	.	.	LowGQX	END=153923977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153923978	.	C	.	.	LowGQX	.	GT	./.
chr1	153923979	.	C	.	.	LowGQX	END=153924016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153924017	.	A	.	.	LowGQX	.	GT	./.
chr1	153924018	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153924019	.	G	.	.	LowGQX	END=153924024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153924025	.	A	.	.	LowGQX	.	GT	./.
chr1	153924026	.	G	.	.	LowGQX	END=153924029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153924030	.	G	.	.	LowGQX	.	GT	./.
chr1	153924031	.	G	.	.	LowGQX	END=153924035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153924036	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153924037	.	C	.	.	LowGQX	END=153924066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153924067	.	C	.	.	LowGQX	.	GT	./.
chr1	153924068	.	T	.	.	LowGQX	END=153924075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153924076	.	G	.	.	LowGQX	.	GT	./.
chr1	153924077	.	A	.	.	LowGQX	END=153924087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153924088	.	T	.	.	LowGQX	.	GT	./.
chr1	153924089	.	T	.	.	LowGQX	END=153924094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153924095	.	T	.	.	LowGQX	END=153924152	GT	./.
chr1	153924492	.	A	.	.	LowGQX	END=153924740	GT	./.
chr1	153924848	.	T	.	.	LowGQX	END=153924947	GT	./.
chr1	153925030	.	C	.	.	LowGQX	END=153925035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153925036	.	C	.	.	LowGQX	.	GT	./.
chr1	153925037	.	C	.	.	LowGQX	END=153925044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153925045	.	A	.	.	LowGQX	.	GT	./.
chr1	153925046	.	C	.	.	LowGQX	END=153925058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153925059	.	C	.	.	LowGQX	.	GT	./.
chr1	153925060	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153925061	.	A	.	.	LowGQX	.	GT	./.
chr1	153925062	.	T	.	.	LowGQX	END=153925097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153925098	.	C	.	.	LowGQX	END=153925129	GT	./.
chr1	153925246	.	G	.	.	LowGQX	END=153925345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153925693	.	A	.	.	LowGQX	END=153925695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	153925696	.	T	.	.	LowGQX	.	GT	./.
chr1	153925697	.	A	.	.	LowGQX	END=153925703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	153925704	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153925705	.	C	.	.	LowGQX	END=153925745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153925746	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	153925747	.	C	.	.	LowGQX	END=153925771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	153925772	.	G	T	9.30	LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr1	153925773	.	T	.	.	LowGQX	END=153925793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153925794	.	C	.	.	LowGQX	.	GT	./.
chr1	153925795	.	T	.	.	LowGQX	END=153925796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153925797	.	G	.	.	LowGQX	END=153925798	GT	./.
chr1	153925799	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153925800	.	A	.	.	LowGQX	END=153925801	GT	./.
chr1	153925802	.	T	.	.	LowGQX	END=153925808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153925809	.	C	.	.	LowGQX	.	GT	./.
chr1	153925810	.	A	.	.	LowGQX	END=153925812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153925813	.	A	.	.	LowGQX	.	GT	./.
chr1	153925814	.	C	.	.	LowGQX	END=153925827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153925828	.	G	.	.	LowGQX	END=153925829	GT	./.
chr1	153925830	.	A	.	.	LowGQX	END=153925839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153925840	.	C	.	.	LowGQX	.	GT	./.
chr1	153925841	.	T	.	.	LowGQX	END=153925842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153925843	.	G	.	.	LowGQX	.	GT	./.
chr1	153925844	.	T	.	.	LowGQX	END=153925849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153925850	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	153925851	.	G	.	.	LowGQX	END=153925853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153925854	.	G	.	.	LowGQX	.	GT	./.
chr1	153925855	.	G	.	.	LowGQX	END=153925864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153925865	.	G	.	.	LowGQX	.	GT	./.
chr1	153925866	.	A	.	.	LowGQX	END=153925868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153925869	.	T	.	.	LowGQX	END=153925899	GT	./.
chr1	153925999	.	G	.	.	LowGQX	END=153926098	GT	./.
chr1	153926712	.	G	.	.	LowGQX	END=153926743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153926744	.	A	.	.	LowGQX	END=153926763	GT	./.
chr1	153926764	.	T	.	.	LowGQX	END=153926811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153927346	.	T	.	.	LowGQX	END=153927467	GT	./.
chr1	153927539	.	A	.	.	LowGQX	END=153927644	GT	./.
chr1	153930789	.	C	.	.	LowGQX	END=153930791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153930792	.	T	.	.	LowGQX	END=153930975	GT	./.
chr1	153932572	.	C	.	.	LowGQX	END=153932760	GT	./.
chr1	153932761	.	G	.	.	LowGQX	END=153932986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153932987	.	C	.	.	LowGQX	.	GT	./.
chr1	153932988	.	C	.	.	LowGQX	END=153933011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153933012	.	A	.	.	LowGQX	END=153933013	GT	./.
chr1	153933014	.	G	.	.	LowGQX	END=153933015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153933016	.	A	.	.	LowGQX	.	GT	./.
chr1	153933017	.	A	.	.	LowGQX	END=153933054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	153933055	.	A	.	.	LowGQX	END=153933079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	153933080	.	G	T	9.29	LowGQX	BaseQRankSum=0.000;DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=1.026;QD=2.32;ReadPosRankSum=1.026;SB=-25.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:38.74:39,0,39:60:9:0.500
chr1	153933081	.	C	.	.	LowGQX	END=153933206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153933207	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	153933208	.	A	.	.	LowGQX	END=153933220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153933221	.	G	.	.	LowGQX	END=153933232	GT	./.
chr1	153934694	.	A	.	.	LowGQX	END=153934828	GT	./.
chr1	153935003	.	A	.	.	LowGQX	END=153935193	GT	./.
chr1	153941000	.	G	.	.	LowGQX	END=153941177	GT	./.
chr1	153941404	.	A	.	.	LowGQX	END=153941934	GT	./.
chr1	153945218	.	A	.	.	LowGQX	END=153945324	GT	./.
chr1	153945325	.	C	.	.	LowGQX	END=153945330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153945446	.	A	.	.	LowGQX	END=153945556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153945656	.	C	.	.	LowGQX	END=153945755	GT	./.
chr1	153945849	.	T	.	.	LowGQX	END=153945853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	153945854	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153945855	.	G	.	.	LowGQX	END=153945878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	153945879	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153945880	.	G	.	.	LowGQX	END=153945886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153945887	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153945888	.	C	.	.	LowGQX	END=153945922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153945923	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:3.01:60:3
chr1	153945924	.	C	.	.	LowGQX	END=153945930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	153945931	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	153945932	.	T	.	.	LowGQX	END=153945948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946094	.	A	.	.	LowGQX	END=153946095	GT	./.
chr1	153946096	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946097	.	T	.	.	LowGQX	END=153946098	GT	./.
chr1	153946099	.	C	.	.	LowGQX	END=153946100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946101	.	T	.	.	LowGQX	.	GT	./.
chr1	153946102	.	C	.	.	LowGQX	END=153946103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946104	.	T	.	.	LowGQX	.	GT	./.
chr1	153946105	.	T	.	.	LowGQX	END=153946108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946109	.	C	.	.	LowGQX	.	GT	./.
chr1	153946110	.	C	.	.	LowGQX	END=153946111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946112	.	T	.	.	LowGQX	.	GT	./.
chr1	153946113	.	G	.	.	LowGQX	END=153946115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946116	.	T	.	.	LowGQX	END=153946117	GT	./.
chr1	153946118	.	T	.	.	LowGQX	END=153946119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946120	.	A	.	.	LowGQX	.	GT	./.
chr1	153946121	.	T	.	.	LowGQX	END=153946122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946123	.	A	.	.	LowGQX	.	GT	./.
chr1	153946124	.	T	.	.	LowGQX	END=153946127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946128	.	G	.	.	LowGQX	.	GT	./.
chr1	153946129	.	C	.	.	LowGQX	END=153946131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946132	.	A	.	.	LowGQX	.	GT	./.
chr1	153946133	.	G	.	.	LowGQX	END=153946134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946135	.	T	.	.	LowGQX	.	GT	./.
chr1	153946136	.	T	.	.	LowGQX	END=153946137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946138	.	A	.	.	LowGQX	.	GT	./.
chr1	153946139	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946140	.	T	.	.	LowGQX	.	GT	./.
chr1	153946141	.	C	.	.	LowGQX	END=153946151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946152	.	T	.	.	LowGQX	.	GT	./.
chr1	153946153	.	C	.	.	LowGQX	END=153946154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946155	.	A	.	.	LowGQX	.	GT	./.
chr1	153946156	.	C	.	.	LowGQX	END=153946167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946168	.	T	.	.	LowGQX	.	GT	./.
chr1	153946169	.	C	.	.	LowGQX	END=153946193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946194	.	T	.	.	LowGQX	.	GT	./.
chr1	153946346	.	A	.	.	LowGQX	END=153946350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	153946351	.	C	A	9.30	LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=-0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr1	153946352	.	T	.	.	LowGQX	END=153946420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	153946421	.	G	.	.	LowGQX	.	GT	./.
chr1	153946422	.	A	.	.	LowGQX	END=153946440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946441	.	A	.	.	LowGQX	.	GT	./.
chr1	153946442	.	G	.	.	LowGQX	END=153946443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946444	.	A	.	.	LowGQX	.	GT	./.
chr1	153946445	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946446	.	G	.	.	LowGQX	.	GT	./.
chr1	153946447	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946448	.	A	.	.	LowGQX	.	GT	./.
chr1	153946449	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946450	.	A	.	.	LowGQX	END=153946451	GT	./.
chr1	153946452	.	G	.	.	LowGQX	END=153946453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946454	.	C	.	.	LowGQX	.	GT	./.
chr1	153946455	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946456	.	C	.	.	LowGQX	.	GT	./.
chr1	153946457	.	A	.	.	LowGQX	END=153946461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946462	.	G	.	.	LowGQX	.	GT	./.
chr1	153946463	.	G	.	.	LowGQX	END=153946465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946466	.	A	.	.	LowGQX	.	GT	./.
chr1	153946467	.	C	.	.	LowGQX	END=153946476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946477	.	A	.	.	LowGQX	.	GT	./.
chr1	153946478	.	G	.	.	LowGQX	END=153946490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946491	.	C	.	.	LowGQX	.	GT	./.
chr1	153946492	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946493	.	A	.	.	LowGQX	.	GT	./.
chr1	153946494	.	A	.	.	LowGQX	END=153946496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946497	.	C	.	.	LowGQX	END=153946499	GT	./.
chr1	153946500	.	A	.	.	LowGQX	END=153946504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946505	.	G	.	.	LowGQX	.	GT	./.
chr1	153946506	.	C	.	.	LowGQX	END=153946511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946512	.	C	.	.	LowGQX	.	GT	./.
chr1	153946513	.	G	.	.	LowGQX	END=153946519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946520	.	G	.	.	LowGQX	.	GT	./.
chr1	153946521	.	C	.	.	LowGQX	END=153946526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946527	.	G	.	.	LowGQX	.	GT	./.
chr1	153946528	.	C	.	.	LowGQX	END=153946530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946531	.	A	.	.	LowGQX	.	GT	./.
chr1	153946532	.	T	.	.	LowGQX	END=153946539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153946540	.	G	.	.	LowGQX	END=153946541	GT	./.
chr1	153946542	.	G	.	.	LowGQX	END=153946543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153947153	.	A	.	.	LowGQX	END=153947313	GT	./.
chr1	153948292	.	C	.	.	LowGQX	END=153948311	GT	./.
chr1	153948312	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153948313	.	A	.	.	LowGQX	.	GT	./.
chr1	153948314	.	T	.	.	LowGQX	END=153948319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153948320	.	T	.	.	LowGQX	.	GT	./.
chr1	153948321	.	T	.	.	LowGQX	END=153948341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153948342	.	T	.	.	LowGQX	.	GT	./.
chr1	153948343	.	C	.	.	LowGQX	END=153948344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153948345	.	C	.	.	LowGQX	END=153948347	GT	./.
chr1	153948348	.	C	.	.	LowGQX	END=153948351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153948352	.	T	.	.	LowGQX	.	GT	./.
chr1	153948353	.	C	.	.	LowGQX	END=153948355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153948356	.	G	.	.	LowGQX	.	GT	./.
chr1	153948357	.	T	.	.	LowGQX	END=153948365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153948366	.	A	.	.	LowGQX	.	GT	./.
chr1	153948367	.	C	.	.	LowGQX	END=153948372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153948373	.	G	.	.	LowGQX	.	GT	./.
chr1	153948374	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153948375	.	T	.	.	LowGQX	.	GT	./.
chr1	153948376	.	A	.	.	LowGQX	END=153948378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153948379	.	T	.	.	LowGQX	.	GT	./.
chr1	153948380	.	T	.	.	LowGQX	END=153948383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153948384	.	G	.	.	LowGQX	.	GT	./.
chr1	153948385	.	C	.	.	LowGQX	END=153948386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153948387	.	A	.	.	LowGQX	.	GT	./.
chr1	153948388	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153948389	.	G	.	.	LowGQX	.	GT	./.
chr1	153948390	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153948391	.	G	.	.	LowGQX	.	GT	./.
chr1	153949167	.	A	.	.	LowGQX	END=153949285	GT	./.
chr1	153949421	.	G	.	.	LowGQX	END=153949520	GT	./.
chr1	153949638	.	C	.	.	LowGQX	END=153949706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153949707	.	G	.	.	LowGQX	END=153949723	GT	./.
chr1	153949724	.	A	.	.	LowGQX	END=153949737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153954564	.	A	.	.	LowGQX	END=153954663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153954844	.	C	.	.	LowGQX	END=153954943	GT	./.
chr1	153954994	.	G	.	.	LowGQX	END=153955093	GT	./.
chr1	153955190	.	C	.	.	LowGQX	END=153955289	GT	./.
chr1	153955684	.	A	.	.	LowGQX	END=153955783	GT	./.
chr1	153955976	.	G	.	.	LowGQX	END=153956075	GT	./.
chr1	153957125	.	A	.	.	LowGQX	END=153957186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153957187	.	A	.	.	LowGQX	END=153957277	GT	./.
chr1	153958587	.	A	.	.	LowGQX	END=153958666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153958667	.	C	.	.	LowGQX	END=153958714	GT	./.
chr1	153963226	.	T	.	.	LowGQX	END=153963325	GT	./.
chr1	153963589	.	A	.	.	LowGQX	END=153963785	GT	./.
chr1	153963990	.	C	.	.	LowGQX	END=153964154	GT	./.
chr1	153964496	.	A	.	.	LowGQX	END=153964595	GT	./.
chr1	153965309	.	G	.	.	LowGQX	END=153965351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153965352	.	G	.	.	LowGQX	END=153965413	GT	./.
chr1	153965479	.	A	.	.	LowGQX	END=153965578	GT	./.
chr1	153967550	.	A	.	.	LowGQX	END=153967626	GT	./.
chr1	153967627	.	G	.	.	LowGQX	END=153967638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153967639	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153967640	.	G	.	.	LowGQX	.	GT	./.
chr1	153967641	.	G	.	.	LowGQX	END=153967658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153973330	.	A	.	.	LowGQX	END=153973451	GT	./.
chr1	153973452	.	C	.	.	LowGQX	END=153973473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153973474	.	G	.	.	LowGQX	.	GT	./.
chr1	153973475	.	C	.	.	LowGQX	END=153973483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153973484	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	153973485	.	G	.	.	LowGQX	END=153973486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153973487	.	G	.	.	LowGQX	.	GT	./.
chr1	153973488	.	G	.	.	LowGQX	END=153973489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153973490	.	G	.	.	LowGQX	.	GT	./.
chr1	153973491	.	A	.	.	LowGQX	END=153973509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153973510	.	C	.	.	LowGQX	END=153973511	GT	./.
chr1	153973512	.	C	.	.	LowGQX	END=153973538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153974209	.	A	.	.	LowGQX	END=153974392	GT	./.
chr1	153974393	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153974394	.	A	.	.	LowGQX	.	GT	./.
chr1	153974395	.	G	.	.	LowGQX	END=153974403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153974404	.	A	.	.	LowGQX	END=153974405	GT	./.
chr1	153974406	.	G	.	.	LowGQX	END=153974436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153974437	.	A	.	.	LowGQX	.	GT	./.
chr1	153974438	.	C	.	.	LowGQX	END=153974452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153974453	.	C	.	.	LowGQX	.	GT	./.
chr1	153974454	.	A	.	.	LowGQX	END=153974460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153974461	.	C	.	.	LowGQX	.	GT	./.
chr1	153974462	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153974463	.	T	.	.	LowGQX	.	GT	./.
chr1	153982446	.	A	.	.	LowGQX	END=153982450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153982451	.	T	.	.	LowGQX	.	GT	./.
chr1	153982452	.	C	.	.	LowGQX	END=153982521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153982522	.	T	.	.	LowGQX	END=153982599	GT	./.
chr1	153984718	.	A	.	.	LowGQX	END=153984786	GT	./.
chr1	153984787	.	G	.	.	LowGQX	END=153984848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	153991407	.	A	.	.	LowGQX	END=153991547	GT	./.
chr1	153994600	.	A	.	.	LowGQX	END=153994821	GT	./.
chr1	153995576	.	A	.	.	LowGQX	END=153995723	GT	./.
chr1	153995724	.	G	.	.	LowGQX	END=153995775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	153998016	.	A	.	.	LowGQX	END=153998194	GT	./.
chr1	153999978	.	T	.	.	LowGQX	END=153999990	GT	./.
chr1	153999991	.	T	.	.	LowGQX	END=153999999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154000000	.	A	.	.	LowGQX	.	GT	./.
chr1	154000001	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154000002	.	C	.	.	LowGQX	.	GT	./.
chr1	154000003	.	T	.	.	LowGQX	END=154000013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154000014	.	A	.	.	LowGQX	.	GT	./.
chr1	154000015	.	G	.	.	LowGQX	END=154000016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154000017	.	C	.	.	LowGQX	.	GT	./.
chr1	154000018	.	A	.	.	LowGQX	END=154000019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154000020	.	C	.	.	LowGQX	.	GT	./.
chr1	154000021	.	A	.	.	LowGQX	END=154000023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154000024	.	A	.	.	LowGQX	.	GT	./.
chr1	154000025	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154000026	.	C	.	.	LowGQX	.	GT	./.
chr1	154000027	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154000028	.	G	.	.	LowGQX	.	GT	./.
chr1	154000029	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154000030	.	T	.	.	LowGQX	.	GT	./.
chr1	154000031	.	C	.	.	LowGQX	END=154000034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154000035	.	T	.	.	LowGQX	.	GT	./.
chr1	154000036	.	T	.	.	LowGQX	END=154000037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154000038	.	G	.	.	LowGQX	END=154000039	GT	./.
chr1	154000040	.	A	.	.	LowGQX	END=154000045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154000046	.	G	.	.	LowGQX	.	GT	./.
chr1	154000047	.	A	.	.	LowGQX	END=154000049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154000050	.	G	.	.	LowGQX	.	GT	./.
chr1	154000051	.	A	.	.	LowGQX	END=154000054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154000055	.	G	.	.	LowGQX	.	GT	./.
chr1	154000056	.	T	.	.	LowGQX	END=154000062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154000063	.	T	.	.	LowGQX	.	GT	./.
chr1	154000064	.	T	.	.	LowGQX	END=154000067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154000068	.	A	.	.	LowGQX	END=154000070	GT	./.
chr1	154000071	.	C	.	.	LowGQX	END=154000072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154000073	.	C	.	.	LowGQX	.	GT	./.
chr1	154000074	.	C	.	.	LowGQX	END=154000077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154002340	.	T	.	.	LowGQX	END=154002366	GT	./.
chr1	154002367	.	C	.	.	LowGQX	END=154002383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154002384	.	T	.	.	LowGQX	.	GT	./.
chr1	154002385	.	T	.	.	LowGQX	END=154002432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154002433	.	T	.	.	LowGQX	.	GT	./.
chr1	154002434	.	T	.	.	LowGQX	END=154002463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154002464	.	T	.	.	LowGQX	.	GT	./.
chr1	154002465	.	C	.	.	LowGQX	END=154002484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154002485	.	G	.	.	LowGQX	.	GT	./.
chr1	154002486	.	G	.	.	LowGQX	END=154002517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154002518	.	G	.	.	LowGQX	END=154002532	GT	./.
chr1	154018543	.	A	.	.	LowGQX	END=154018649	GT	./.
chr1	154018650	.	G	.	.	LowGQX	END=154018678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154018756	.	C	.	.	LowGQX	END=154018809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154018810	.	A	.	.	LowGQX	END=154018855	GT	./.
chr1	154026702	.	A	.	.	LowGQX	END=154026885	GT	./.
chr1	154027228	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154027229	.	T	.	.	LowGQX	.	GT	./.
chr1	154027230	.	C	.	.	LowGQX	END=154027234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154027235	.	T	.	.	LowGQX	END=154027237	GT	./.
chr1	154027238	.	A	.	.	LowGQX	END=154027239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154027240	.	G	.	.	LowGQX	.	GT	./.
chr1	154027241	.	T	.	.	LowGQX	END=154027249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154027250	.	A	.	.	LowGQX	.	GT	./.
chr1	154027251	.	T	.	.	LowGQX	END=154027254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154027255	.	A	.	.	LowGQX	.	GT	./.
chr1	154027256	.	T	.	.	LowGQX	END=154027271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154027272	.	T	.	.	LowGQX	.	GT	./.
chr1	154027273	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154027274	.	A	.	.	LowGQX	.	GT	./.
chr1	154027275	.	T	.	.	LowGQX	END=154027278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154027279	.	C	.	.	LowGQX	.	GT	./.
chr1	154027280	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154027281	.	C	.	.	LowGQX	.	GT	./.
chr1	154027282	.	T	.	.	LowGQX	END=154027283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154027284	.	G	.	.	LowGQX	END=154027285	GT	./.
chr1	154027286	.	A	.	.	LowGQX	END=154027287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154027288	.	A	.	.	LowGQX	END=154027289	GT	./.
chr1	154027290	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154027291	.	T	.	.	LowGQX	.	GT	./.
chr1	154027292	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154027293	.	T	.	.	LowGQX	END=154027295	GT	./.
chr1	154027296	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154027297	.	T	.	.	LowGQX	.	GT	./.
chr1	154027298	.	G	.	.	LowGQX	END=154027301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154027302	.	G	.	.	LowGQX	.	GT	./.
chr1	154027303	.	A	.	.	LowGQX	END=154027304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154027305	.	A	.	.	LowGQX	END=154027307	GT	./.
chr1	154027308	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154027309	.	C	.	.	LowGQX	END=154027310	GT	./.
chr1	154027311	.	T	.	.	LowGQX	END=154027317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154027318	.	G	.	.	LowGQX	END=154027319	GT	./.
chr1	154027320	.	A	.	.	LowGQX	END=154027321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154027322	.	A	.	.	LowGQX	.	GT	./.
chr1	154027323	.	C	.	.	LowGQX	END=154027327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154029289	.	A	.	.	LowGQX	END=154029468	GT	./.
chr1	154030563	.	A	.	.	LowGQX	END=154030578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154030579	.	G	.	.	LowGQX	.	GT	./.
chr1	154030580	.	G	.	.	LowGQX	END=154030656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154030657	.	C	.	.	LowGQX	END=154030694	GT	./.
chr1	154031039	.	A	.	.	LowGQX	END=154031171	GT	./.
chr1	154033014	.	A	.	.	LowGQX	END=154033119	GT	./.
chr1	154033416	.	A	.	.	LowGQX	END=154033524	GT	./.
chr1	154034057	.	C	.	.	LowGQX	END=154034209	GT	./.
chr1	154042747	.	A	.	.	LowGQX	END=154042943	GT	./.
chr1	154061895	.	A	.	.	LowGQX	END=154062072	GT	./.
chr1	154067409	.	A	.	.	LowGQX	END=154067634	GT	./.
chr1	154072472	.	A	.	.	LowGQX	END=154072621	GT	./.
chr1	154076486	.	A	.	.	LowGQX	END=154076499	GT	./.
chr1	154076500	.	G	.	.	LowGQX	END=154076679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154076680	.	C	.	.	LowGQX	END=154076688	GT	./.
chr1	154090199	.	A	.	.	LowGQX	END=154090258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154090259	.	C	.	.	LowGQX	END=154090358	GT	./.
chr1	154091145	.	A	.	.	LowGQX	END=154091286	GT	./.
chr1	154098797	.	A	.	.	LowGQX	END=154098941	GT	./.
chr1	154099785	.	A	.	.	LowGQX	END=154099830	GT	./.
chr1	154099831	.	C	.	.	LowGQX	END=154099895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154101738	.	T	.	.	LowGQX	END=154101837	GT	./.
chr1	154108258	.	G	.	.	LowGQX	END=154108386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154108387	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	154108388	.	T	.	.	LowGQX	END=154108450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154110580	.	A	.	.	LowGQX	END=154110759	GT	./.
chr1	154112276	.	A	.	.	LowGQX	END=154112430	GT	./.
chr1	154113904	.	T	.	.	LowGQX	END=154114003	GT	./.
chr1	154115920	.	A	.	.	LowGQX	END=154116055	GT	./.
chr1	154125210	.	A	.	.	LowGQX	END=154125350	GT	./.
chr1	154127316	.	A	.	.	LowGQX	END=154127424	GT	./.
chr1	154127425	.	A	.	.	LowGQX	END=154127522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154130064	.	G	.	.	PASS	END=154130068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:60:60
chr1	154130069	.	G	.	.	PASS	END=154130087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:72:60
chr1	154130088	.	G	.	.	PASS	END=154130090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	154130091	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:63:60
chr1	154130092	.	C	.	.	PASS	END=154130128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	154130129	.	G	.	.	PASS	END=154130158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	154130159	.	G	.	.	PASS	END=154130248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	154131394	.	A	.	.	PASS	END=154131410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	154131411	.	G	.	.	PASS	END=154131429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	154131430	.	A	.	.	PASS	END=154131504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	154131505	.	A	.	.	PASS	END=154131565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	154131566	.	A	.	.	PASS	END=154131575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	154140362	.	T	.	.	PASS	END=154140380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	154140381	.	G	.	.	PASS	END=154140384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	154140385	.	A	.	.	PASS	END=154140437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	154140438	.	C	.	.	PASS	END=154140484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	154141730	.	C	.	.	PASS	END=154141758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	154141759	.	C	.	.	PASS	END=154141778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	154141779	.	A	.	.	PASS	END=154141856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	154141857	.	C	.	.	PASS	END=154141875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	154141876	.	A	.	.	PASS	END=154141893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	154141894	.	G	.	.	PASS	END=154141907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr1	154141908	.	A	G	396.62	PASS	BaseQRankSum=-0.659;DP=34;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=-0.659;QD=11.67;ReadPosRankSum=-0.936;SB=-191.84	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:15,19:34:99:427,0,375:60:99:0.559
chr1	154141909	.	G	.	.	PASS	END=154141910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:54:60
chr1	154142821	.	A	.	.	PASS	END=154142859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	154142860	.	A	.	.	PASS	END=154142893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	154142894	.	T	.	.	PASS	END=154142978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	154142979	.	A	.	.	PASS	END=154142996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	154143074	.	T	.	.	PASS	END=154143202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	154143203	.	A	.	.	PASS	END=154143234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	154143235	.	A	.	.	PASS	END=154143238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	154143838	.	A	.	.	PASS	END=154143840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	154143841	.	G	.	.	PASS	END=154143891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	154143892	.	C	.	.	PASS	END=154143938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	154143939	.	G	.	.	PASS	END=154143989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	154143990	.	A	.	.	PASS	END=154144015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	154144453	.	A	.	.	PASS	END=154144455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	154144456	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:63:60
chr1	154144457	.	A	.	.	PASS	END=154144461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:96:60
chr1	154144462	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:64:60
chr1	154144463	.	A	.	.	PASS	END=154144509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	154144510	.	C	.	.	PASS	END=154144537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	154144538	.	C	.	.	PASS	END=154144556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	154144557	.	T	.	.	PASS	END=154144568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	154144569	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:51:60
chr1	154144570	.	C	.	.	PASS	END=154144579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	154144580	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:54:60
chr1	154144581	.	C	.	.	PASS	END=154144610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	154144611	.	G	.	.	PASS	END=154144613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	154144614	.	A	.	.	PASS	END=154144619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr1	154144620	.	T	.	.	PASS	END=154144624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	154144625	.	A	.	.	PASS	END=154144626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:60
chr1	154144627	.	G	.	.	PASS	END=154144628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	154144629	.	A	.	.	PASS	END=154144631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr1	154144632	.	A	.	.	PASS	END=154144633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	154144634	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:60
chr1	154144635	.	G	.	.	PASS	END=154144637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	154144638	.	A	.	.	PASS	END=154144642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	154144643	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:60
chr1	154144644	.	G	.	.	PASS	END=154144650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	154144651	.	G	.	.	LowGQX	END=154144652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:60
chr1	154144653	.	A	.	.	PASS	END=154144654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	154144655	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:21:60
chr1	154144656	.	A	.	.	PASS	END=154144662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	154144663	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:9:60
chr1	154144664	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	154144665	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	154144666	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr1	154144667	.	C	.	.	PASS	END=154144671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	154144672	.	C	.	.	LowGQX	END=154144674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	154144675	.	A	.	.	PASS	END=154144696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	154144697	.	G	.	.	PASS	END=154144698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	154144699	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:48:60
chr1	154144700	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:33:60
chr1	154144701	.	A	.	.	PASS	END=154144703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	154144704	.	A	.	.	PASS	END=154144710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	154144711	.	C	.	.	PASS	END=154144713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	154144714	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	154144715	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	154144716	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:21:60
chr1	154144717	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:39:60
chr1	154144718	.	A	.	.	LowGQX	END=154144721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	154144722	.	T	.	.	PASS	END=154144724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	154144725	.	G	.	.	LowGQX	END=154144731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	154144732	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:36:60
chr1	154144733	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	154144734	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	154144735	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:60
chr1	154144736	.	C	.	.	LowGQX	END=154144742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	154144743	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	154144744	.	A	.	.	LowGQX	END=154144746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	154144747	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:1:60
chr1	154144748	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	154144749	.	A	.	.	PASS	END=154144751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	154144752	.	A	.	.	LowGQX	END=154144753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	154144754	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	154144755	.	G	.	.	LowGQX	END=154144758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	154144759	.	C	.	.	LowGQX	END=154144761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	154144762	.	A	.	.	LowGQX	END=154144765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	154144766	.	A	.	.	LowGQX	END=154144770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	154144771	.	T	.	.	LowGQX	END=154144776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	154144777	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	154144778	.	A	.	.	LowGQX	END=154144786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	154144787	.	T	.	.	LowGQX	END=154144789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	154144790	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	154144791	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	154144792	.	T	.	.	LowGQX	END=154144795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	154144796	.	C	.	.	LowGQX	END=154144798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	154144799	.	G	.	.	LowGQX	END=154144801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	154144802	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	154144803	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	154144804	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	154144805	.	G	.	.	LowGQX	END=154144806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	154144807	.	A	.	.	LowGQX	END=154144808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	154144809	.	G	.	.	LowGQX	END=154144812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	154144813	.	C	.	.	LowGQX	END=154144819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	154144820	.	A	.	.	LowGQX	END=154144824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	154144825	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	154144826	.	G	.	.	LowGQX	END=154144830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	154144831	.	T	.	.	LowGQX	END=154144834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	154144835	.	T	.	.	LowGQX	END=154144845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	154144846	.	T	.	.	LowGQX	END=154144850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	154144851	.	T	.	.	LowGQX	END=154144864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154144865	.	G	.	.	LowGQX	.	GT	./.
chr1	154144866	.	G	.	.	LowGQX	END=154144890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154144891	.	A	.	.	LowGQX	END=154144892	GT	./.
chr1	154144893	.	T	.	.	LowGQX	END=154144898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154144899	.	T	.	.	LowGQX	.	GT	./.
chr1	154144900	.	T	.	.	LowGQX	END=154144901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154144902	.	A	.	.	LowGQX	.	GT	./.
chr1	154144903	.	A	.	.	LowGQX	END=154144924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154144925	.	G	.	.	LowGQX	.	GT	./.
chr1	154144926	.	G	.	.	LowGQX	END=154144927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154144928	.	C	.	.	LowGQX	END=154144929	GT	./.
chr1	154144930	.	C	.	.	LowGQX	END=154144953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154144954	.	C	.	.	LowGQX	.	GT	./.
chr1	154144955	.	A	.	.	LowGQX	END=154144964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154144965	.	T	.	.	LowGQX	.	GT	./.
chr1	154144966	.	T	.	.	LowGQX	END=154144968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154144969	.	A	.	.	LowGQX	.	GT	./.
chr1	154144970	.	G	.	.	LowGQX	END=154144972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154144973	.	A	.	.	LowGQX	.	GT	./.
chr1	154144974	.	C	.	.	LowGQX	END=154144982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154144983	.	C	.	.	LowGQX	.	GT	./.
chr1	154144984	.	T	.	.	LowGQX	END=154144986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154144987	.	G	.	.	LowGQX	.	GT	./.
chr1	154144988	.	C	.	.	LowGQX	END=154144990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154145329	.	C	.	.	PASS	END=154145368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	154145369	.	G	.	.	PASS	END=154145431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:59
chr1	154145432	.	A	.	.	PASS	END=154145481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:59
chr1	154145482	.	A	.	.	PASS	END=154145505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	154145509	.	T	.	.	PASS	END=154145538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:59
chr1	154145539	.	G	.	.	PASS	END=154145563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	154145564	.	T	.	.	PASS	END=154145592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	154145593	.	G	.	.	PASS	END=154145688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:59
chr1	154145689	.	A	.	.	PASS	END=154145711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:87:60
chr1	154145712	.	C	.	.	PASS	END=154145728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	154148540	.	G	.	.	PASS	END=154148578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:97:60
chr1	154148579	.	T	.	.	PASS	END=154148589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	154148590	.	C	.	.	PASS	END=154148673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	154148674	.	T	.	.	PASS	END=154148718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	154148719	.	C	.	.	PASS	END=154148731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	154148732	.	T	.	.	PASS	END=154148762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	154148763	.	C	.	.	PASS	END=154148775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	154155413	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:36:60
chr1	154155414	.	C	.	.	PASS	END=154155418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	154155419	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:57:60
chr1	154155420	.	C	.	.	PASS	END=154155423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	154155424	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:60
chr1	154155425	.	G	.	.	PASS	END=154155438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	154155439	.	C	.	.	PASS	END=154155454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:93:60
chr1	154155455	.	T	.	.	PASS	END=154155484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:59
chr1	154155485	.	T	.	.	PASS	END=154155573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:55
chr1	154155574	.	C	.	.	PASS	END=154155596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:55
chr1	154155597	.	G	.	.	PASS	END=154155606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:54
chr1	154155607	.	A	.	.	PASS	END=154155614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:55
chr1	154155615	.	C	.	.	PASS	END=154155618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:58
chr1	154155619	.	C	.	.	PASS	END=154155626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	154155627	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:54:60
chr1	154155628	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:75:60
chr1	154155629	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:48:60
chr1	154155630	.	C	.	.	PASS	END=154155634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	154155635	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:75:60
chr1	154155636	.	C	.	.	PASS	END=154155642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	154155643	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:69:60
chr1	154155644	.	C	.	.	PASS	END=154155646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	154163611	.	A	.	.	PASS	END=154163627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	154163628	.	G	.	.	PASS	END=154163635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	154163636	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:41:60
chr1	154163637	.	C	.	.	PASS	END=154163646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	154163647	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:68:60
chr1	154163648	.	T	.	.	PASS	END=154163656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	154163657	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:49:1:60
chr1	154163658	.	T	.	.	PASS	END=154163691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	154163692	.	C	.	.	PASS	END=154163803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:97:60
chr1	154163804	.	A	.	.	PASS	END=154163812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:85:60
chr1	154163813	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:39:60
chr1	154163814	.	A	.	.	PASS	END=154163836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:78:60
chr1	154163837	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:69:60
chr1	154163838	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:96:60
chr1	154164327	.	T	.	.	PASS	END=154164369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	154164370	.	G	.	.	PASS	END=154164473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:96:60
chr1	154164474	.	T	.	.	PASS	END=154164498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr1	154164499	.	A	.	.	PASS	END=154164514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	154164515	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:54:60
chr1	154164516	.	T	.	.	PASS	END=154164518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	154164519	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:42:60
chr1	154164520	.	C	.	.	PASS	END=154164527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	154164528	.	A	.	.	PASS	END=154164545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	154166071	.	G	.	.	LowGQX	END=154166230	GT	./.
chr1	154171901	.	C	.	.	LowGQX	END=154172006	GT	./.
chr1	154172933	.	A	.	.	LowGQX	END=154173066	GT	./.
chr1	154178045	.	G	.	.	LowGQX	END=154178144	GT	./.
chr1	154178659	.	A	.	.	LowGQX	END=154178792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154178793	.	T	.	.	LowGQX	END=154178817	GT	./.
chr1	154179926	.	C	.	.	LowGQX	END=154179930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154179931	.	A	.	.	LowGQX	.	GT	./.
chr1	154179932	.	C	.	.	LowGQX	END=154179935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154179936	.	G	.	.	LowGQX	.	GT	./.
chr1	154179937	.	T	.	.	LowGQX	END=154179950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154179951	.	T	.	.	LowGQX	.	GT	./.
chr1	154179952	.	T	.	.	LowGQX	END=154179997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154179998	.	T	.	.	LowGQX	.	GT	./.
chr1	154179999	.	T	.	.	LowGQX	END=154180022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154180023	.	T	.	.	LowGQX	.	GT	./.
chr1	154180024	.	A	.	.	LowGQX	END=154180038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154180039	.	T	.	.	LowGQX	.	GT	./.
chr1	154180040	.	T	.	.	LowGQX	END=154180041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154180042	.	T	.	.	LowGQX	.	GT	./.
chr1	154180043	.	T	.	.	LowGQX	END=154180061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154180062	.	T	.	.	LowGQX	END=154180126	GT	./.
chr1	154184774	.	A	.	.	LowGQX	END=154184873	GT	./.
chr1	154184932	.	A	.	.	LowGQX	END=154184937	GT	./.
chr1	154184938	.	G	.	.	LowGQX	END=154184996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154184997	.	A	.	.	LowGQX	.	GT	./.
chr1	154184998	.	C	.	.	LowGQX	END=154185016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154185017	.	T	.	.	LowGQX	.	GT	./.
chr1	154185018	.	G	.	.	LowGQX	END=154185033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154185034	.	A	.	.	LowGQX	.	GT	./.
chr1	154185035	.	G	.	.	LowGQX	END=154185069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154185070	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	154185071	.	G	.	.	LowGQX	END=154185097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154185098	.	T	.	.	LowGQX	.	GT	./.
chr1	154185099	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154185100	.	T	.	.	LowGQX	.	GT	./.
chr1	154185101	.	C	.	.	LowGQX	END=154185102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154186346	.	G	.	.	LowGQX	END=154186349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154186350	.	C	.	.	LowGQX	END=154186445	GT	./.
chr1	154186931	.	A	.	.	LowGQX	END=154187052	GT	./.
chr1	154192310	.	A	.	.	LowGQX	END=154192415	GT	./.
chr1	154192801	.	T	.	.	LowGQX	END=154192900	GT	./.
chr1	154197595	.	T	.	.	LowGQX	END=154197694	GT	./.
chr1	154199747	.	T	.	.	LowGQX	END=154199846	GT	./.
chr1	154201089	.	A	.	.	LowGQX	END=154201203	GT	./.
chr1	154207065	.	A	.	.	LowGQX	END=154207268	GT	./.
chr1	154207620	.	T	.	.	LowGQX	END=154207728	GT	./.
chr1	154207729	.	G	.	.	LowGQX	END=154207770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154209015	.	C	.	.	LowGQX	END=154209022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154209023	.	T	.	.	LowGQX	.	GT	./.
chr1	154209024	.	T	.	.	LowGQX	END=154209044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154209045	.	G	.	.	LowGQX	.	GT	./.
chr1	154209046	.	C	.	.	LowGQX	END=154209049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154209050	.	G	.	.	LowGQX	END=154209051	GT	./.
chr1	154209052	.	T	.	.	LowGQX	END=154209071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154209072	.	C	.	.	LowGQX	.	GT	./.
chr1	154209073	.	T	.	.	LowGQX	END=154209080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154209081	.	G	.	.	LowGQX	.	GT	./.
chr1	154209082	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154209083	.	A	.	.	LowGQX	.	GT	./.
chr1	154209084	.	T	.	.	LowGQX	END=154209085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154209086	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	154209087	.	G	.	.	LowGQX	END=154209110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154209111	.	T	.	.	LowGQX	.	GT	./.
chr1	154209112	.	T	.	.	LowGQX	END=154209114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154209498	.	A	.	.	LowGQX	END=154209614	GT	./.
chr1	154213966	.	T	.	.	LowGQX	END=154214009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154214010	.	A	.	.	LowGQX	END=154214065	GT	./.
chr1	154215686	.	T	.	.	LowGQX	END=154215785	GT	./.
chr1	154218678	.	A	.	.	LowGQX	END=154218812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154218813	.	C	.	.	LowGQX	END=154218853	GT	./.
chr1	154221713	.	A	.	.	LowGQX	END=154221915	GT	./.
chr1	154223515	.	A	.	.	LowGQX	END=154223796	GT	./.
chr1	154223955	.	A	.	.	LowGQX	END=154224131	GT	./.
chr1	154226363	.	T	.	.	LowGQX	END=154226567	GT	./.
chr1	154227230	.	A	.	.	LowGQX	END=154227326	GT	./.
chr1	154227327	.	G	.	.	LowGQX	END=154227389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154227626	.	A	.	.	LowGQX	END=154227804	GT	./.
chr1	154228146	.	T	.	.	LowGQX	END=154228245	GT	./.
chr1	154229537	.	A	.	.	LowGQX	END=154229542	GT	./.
chr1	154229543	.	C	.	.	LowGQX	END=154229592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154229593	.	A	.	.	LowGQX	.	GT	./.
chr1	154229594	.	C	.	.	LowGQX	END=154229624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154229625	.	A	.	.	LowGQX	.	GT	./.
chr1	154229626	.	G	.	.	LowGQX	END=154229736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154229817	.	T	.	.	LowGQX	END=154229916	GT	./.
chr1	154231430	.	T	.	.	LowGQX	END=154231529	GT	./.
chr1	154232415	.	C	.	.	LowGQX	END=154232514	GT	./.
chr1	154233366	.	A	.	.	LowGQX	END=154233587	GT	./.
chr1	154234016	.	A	.	.	LowGQX	END=154234017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154234018	.	A	.	.	LowGQX	END=154234019	GT	./.
chr1	154234020	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154234021	.	G	.	.	LowGQX	.	GT	./.
chr1	154234022	.	T	.	.	LowGQX	END=154234024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154234025	.	T	.	.	LowGQX	END=154234026	GT	./.
chr1	154234027	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154234028	.	G	.	.	LowGQX	.	GT	./.
chr1	154234029	.	C	.	.	LowGQX	END=154234035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154234036	.	G	.	.	LowGQX	END=154234037	GT	./.
chr1	154234038	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154234039	.	A	.	.	LowGQX	.	GT	./.
chr1	154234040	.	C	.	.	LowGQX	END=154234041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154234042	.	G	.	.	LowGQX	.	GT	./.
chr1	154234043	.	C	.	.	LowGQX	END=154234044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154234045	.	A	.	.	LowGQX	END=154234046	GT	./.
chr1	154234047	.	T	.	.	LowGQX	END=154234050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154234051	.	G	.	.	LowGQX	.	GT	./.
chr1	154234052	.	C	.	.	LowGQX	END=154234055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154234056	.	T	.	.	LowGQX	.	GT	./.
chr1	154234057	.	T	.	.	LowGQX	END=154234061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154234062	.	C	.	.	LowGQX	.	GT	./.
chr1	154234063	.	T	.	.	LowGQX	END=154234070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154234071	.	G	.	.	LowGQX	END=154234072	GT	./.
chr1	154234073	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154234074	.	C	.	.	LowGQX	.	GT	./.
chr1	154234075	.	C	.	.	LowGQX	END=154234076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154234077	.	A	.	.	LowGQX	.	GT	./.
chr1	154234078	.	C	.	.	LowGQX	END=154234082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154234083	.	T	.	.	LowGQX	.	GT	./.
chr1	154234084	.	C	.	.	LowGQX	END=154234086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154234087	.	A	.	.	LowGQX	.	GT	./.
chr1	154234088	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154234089	.	C	.	.	LowGQX	END=154234090	GT	./.
chr1	154234091	.	G	.	.	LowGQX	END=154234098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154234099	.	T	.	.	LowGQX	END=154234175	GT	./.
chr1	154235554	.	T	.	.	LowGQX	END=154235653	GT	./.
chr1	154238961	.	T	.	.	LowGQX	END=154238971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154238972	.	C	.	.	LowGQX	.	GT	./.
chr1	154238973	.	C	.	.	LowGQX	END=154238986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154238987	.	C	.	.	LowGQX	END=154239007	GT	./.
chr1	154239008	.	G	.	.	LowGQX	END=154239009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154239010	.	C	.	.	LowGQX	.	GT	./.
chr1	154239011	.	A	.	.	LowGQX	END=154239023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154239024	.	T	.	.	LowGQX	.	GT	./.
chr1	154239025	.	C	.	.	LowGQX	END=154239046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154239047	.	A	.	.	LowGQX	.	GT	./.
chr1	154239048	.	G	.	.	LowGQX	END=154239060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154241231	.	A	.	.	LowGQX	END=154241432	GT	./.
chr1	154241813	.	T	.	.	LowGQX	END=154241912	GT	./.
chr1	154242674	.	A	.	.	LowGQX	END=154242678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154242679	.	G	.	.	LowGQX	END=154242682	GT	./.
chr1	154242683	.	G	.	.	LowGQX	END=154242766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154242767	.	A	.	.	LowGQX	.	GT	./.
chr1	154242768	.	C	.	.	LowGQX	END=154242778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154242779	.	A	.	.	LowGQX	.	GT	./.
chr1	154242780	.	C	.	.	LowGQX	END=154242865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154242866	.	T	.	.	LowGQX	.	GT	./.
chr1	154242867	.	T	.	.	LowGQX	END=154242944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154242945	.	T	.	.	LowGQX	END=154242961	GT	./.
chr1	154243326	.	T	.	.	LowGQX	END=154243425	GT	./.
chr1	154245149	.	T	.	.	PASS	END=154245163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	154245164	.	C	.	.	PASS	END=154245197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	154245198	.	G	.	.	PASS	END=154245280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	154245281	.	T	.	.	PASS	END=154245298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:96:60
chr1	154245299	.	A	.	.	PASS	END=154245303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	154245761	.	A	.	.	LowGQX	END=154245762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	154245763	.	G	.	.	PASS	END=154245768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	154245769	.	A	.	.	PASS	END=154245793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	154245794	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	154245795	.	T	.	.	PASS	END=154245806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	154245807	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:30:60
chr1	154245808	.	T	.	.	PASS	END=154245814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	154245815	.	C	.	.	PASS	END=154245824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	154245825	.	T	.	.	PASS	END=154245851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	154245852	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:36:60
chr1	154245853	.	A	.	.	PASS	END=154245869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	154245870	.	G	.	.	PASS	END=154245873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:74:60
chr1	154245874	.	A	.	.	PASS	END=154245891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	154245892	.	G	.	.	PASS	END=154245915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	154245916	.	G	.	.	PASS	END=154245957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	154245958	.	T	.	.	PASS	END=154246044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	154246045	.	G	.	.	PASS	END=154246071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	154246072	.	C	.	.	PASS	END=154246120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	154246121	.	G	.	.	PASS	END=154246125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	154246155	.	G	.	.	PASS	END=154246182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	154246183	.	A	.	.	PASS	END=154246220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	154246221	.	C	.	.	PASS	END=154246273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	154246274	.	C	.	.	PASS	END=154246371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	154246372	.	A	.	.	PASS	END=154246414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	154246415	.	G	.	.	PASS	END=154246430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	154246431	.	T	.	.	PASS	END=154246448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	154246449	.	A	.	.	PASS	END=154246470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	154246471	.	T	.	.	PASS	END=154246488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	154247362	.	G	.	.	PASS	END=154247447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	154247448	.	A	.	.	PASS	END=154247478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	154247479	.	T	.	.	PASS	END=154247512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	154247513	.	T	.	.	PASS	END=154247528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	154247542	.	C	.	.	PASS	END=154247609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	154247610	.	T	.	.	PASS	END=154247656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	154247657	.	G	.	.	PASS	END=154247681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	154247682	.	G	.	.	PASS	END=154247787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	154247818	.	G	.	.	PASS	END=154247889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	154247890	.	G	.	.	PASS	END=154247947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	154247948	.	G	.	.	PASS	END=154248010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	154248041	.	T	.	.	PASS	END=154248123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	154248124	.	G	.	.	PASS	END=154248171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	154248172	.	C	.	.	PASS	END=154248190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	154248191	.	C	.	.	PASS	END=154248214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	154248215	.	C	.	.	PASS	END=154248227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	154248228	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:99:60
chr1	154293630	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154293631	.	C	.	.	LowGQX	.	GT	./.
chr1	154293632	.	A	.	.	LowGQX	END=154293664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154293665	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	154293666	.	G	.	.	LowGQX	END=154293697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154293698	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	154293699	.	A	.	.	LowGQX	END=154293725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154293726	.	T	.	.	LowGQX	.	GT	./.
chr1	154293727	.	T	.	.	LowGQX	END=154293730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154293731	.	C	.	.	LowGQX	.	GT	./.
chr1	154293732	.	T	.	.	LowGQX	END=154293738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154294376	.	C	.	.	LowGQX	END=154294387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr1	154294388	.	C	.	.	LowGQX	.	GT	./.
chr1	154294389	.	A	.	.	LowGQX	END=154294393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr1	154294394	.	T	.	.	LowGQX	END=154294395	GT	./.
chr1	154294396	.	C	.	.	LowGQX	END=154294416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr1	154294417	.	C	.	.	LowGQX	END=154294489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	154294490	.	T	.	.	LowGQX	.	GT	./.
chr1	154294491	.	C	.	.	LowGQX	END=154294537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	154295456	.	A	.	.	LowGQX	END=154295545	GT	./.
chr1	154295546	.	G	.	.	LowGQX	END=154295557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154295558	.	T	.	.	LowGQX	.	GT	./.
chr1	154295559	.	T	.	.	LowGQX	END=154295569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154295570	.	G	.	.	LowGQX	.	GT	./.
chr1	154295571	.	G	.	.	LowGQX	END=154295583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154295584	.	T	.	.	LowGQX	.	GT	./.
chr1	154295585	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154295586	.	C	.	.	LowGQX	END=154295587	GT	./.
chr1	154295588	.	C	.	.	LowGQX	END=154295589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154295590	.	A	.	.	LowGQX	.	GT	./.
chr1	154295591	.	C	.	.	LowGQX	END=154295596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154295597	.	T	.	.	LowGQX	.	GT	./.
chr1	154295715	.	A	.	.	LowGQX	END=154295735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154295736	.	A	.	.	LowGQX	.	GT	./.
chr1	154295737	.	G	.	.	LowGQX	END=154295754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154295755	.	A	.	.	LowGQX	.	GT	./.
chr1	154295756	.	C	.	.	LowGQX	END=154295761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154295762	.	C	.	.	LowGQX	.	GT	./.
chr1	154295763	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154295764	.	A	.	.	LowGQX	END=154295765	GT	./.
chr1	154295766	.	G	.	.	LowGQX	END=154295769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154295770	.	A	.	.	LowGQX	.	GT	./.
chr1	154295771	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154295772	.	A	.	.	LowGQX	END=154295833	GT	./.
chr1	154295834	.	A	.	.	LowGQX	END=154295837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154296063	.	A	.	.	LowGQX	END=154296075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154296076	.	T	C	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	154296077	.	G	.	.	LowGQX	END=154296117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154296118	.	G	.	.	LowGQX	END=154296119	GT	./.
chr1	154296120	.	A	.	.	LowGQX	END=154296128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154296129	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	154296130	.	C	.	.	LowGQX	END=154296147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154296148	.	T	.	.	LowGQX	.	GT	./.
chr1	154296149	.	G	.	.	LowGQX	END=154296166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154296167	.	A	.	.	LowGQX	.	GT	./.
chr1	154296168	.	T	.	.	LowGQX	END=154296193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154296194	.	G	.	.	LowGQX	.	GT	./.
chr1	154296195	.	C	.	.	LowGQX	END=154296215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154296216	.	A	.	.	LowGQX	.	GT	./.
chr1	154296217	.	C	.	.	LowGQX	END=154296240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154296241	.	T	.	.	LowGQX	.	GT	./.
chr1	154296242	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154296243	.	T	.	.	LowGQX	.	GT	./.
chr1	154296244	.	C	.	.	LowGQX	END=154296246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154296247	.	C	.	.	LowGQX	.	GT	./.
chr1	154296248	.	A	.	.	LowGQX	END=154296258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154296259	.	T	.	.	LowGQX	.	GT	./.
chr1	154296260	.	G	.	.	LowGQX	END=154296275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154296276	.	T	.	.	LowGQX	END=154296370	GT	./.
chr1	154296756	.	A	.	.	LowGQX	END=154296958	GT	./.
chr1	154300257	.	A	.	.	LowGQX	END=154300265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154300266	.	T	.	.	LowGQX	END=154300356	GT	./.
chr1	154300565	.	C	.	.	LowGQX	END=154300664	GT	./.
chr1	154301402	.	G	.	.	LowGQX	END=154301557	GT	./.
chr1	154302852	.	G	.	.	LowGQX	END=154302951	GT	./.
chr1	154303289	.	A	.	.	LowGQX	END=154303406	GT	./.
chr1	154303522	.	A	.	.	LowGQX	END=154303624	GT	./.
chr1	154303901	.	T	.	.	LowGQX	END=154304000	GT	./.
chr1	154304069	.	C	.	.	LowGQX	END=154304168	GT	./.
chr1	154304416	.	G	.	.	LowGQX	END=154304446	GT	./.
chr1	154304447	.	T	.	.	LowGQX	END=154304454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154304455	.	G	.	.	LowGQX	.	GT	./.
chr1	154304456	.	T	.	.	LowGQX	END=154304470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154304471	.	G	.	.	LowGQX	.	GT	./.
chr1	154304472	.	T	.	.	LowGQX	END=154304476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154304477	.	C	.	.	LowGQX	.	GT	./.
chr1	154304478	.	A	.	.	LowGQX	END=154304481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154304482	.	A	.	.	LowGQX	END=154304483	GT	./.
chr1	154304484	.	A	.	.	LowGQX	END=154304486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154304487	.	G	.	.	LowGQX	.	GT	./.
chr1	154304488	.	C	.	.	LowGQX	END=154304495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154304496	.	G	.	.	LowGQX	.	GT	./.
chr1	154304497	.	A	.	.	LowGQX	END=154304500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154304501	.	G	.	.	LowGQX	.	GT	./.
chr1	154304502	.	T	.	.	LowGQX	END=154304504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154304505	.	G	.	.	LowGQX	.	GT	./.
chr1	154304506	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154304507	.	G	.	.	LowGQX	END=154304508	GT	./.
chr1	154304509	.	C	.	.	LowGQX	END=154304510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154304511	.	T	.	.	LowGQX	.	GT	./.
chr1	154304512	.	G	.	.	LowGQX	END=154304515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305084	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305085	.	T	.	.	LowGQX	END=154305087	GT	./.
chr1	154305088	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305089	.	T	.	.	LowGQX	END=154305091	GT	./.
chr1	154305092	.	A	.	.	LowGQX	END=154305094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305095	.	G	.	.	LowGQX	END=154305097	GT	./.
chr1	154305098	.	A	.	.	LowGQX	END=154305099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305100	.	C	.	.	LowGQX	.	GT	./.
chr1	154305101	.	A	.	.	LowGQX	END=154305105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305106	.	G	.	.	LowGQX	.	GT	./.
chr1	154305107	.	A	.	.	LowGQX	END=154305116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305117	.	A	.	.	LowGQX	.	GT	./.
chr1	154305118	.	G	.	.	LowGQX	END=154305119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305120	.	C	.	.	LowGQX	.	GT	./.
chr1	154305121	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305122	.	A	.	.	LowGQX	END=154305123	GT	./.
chr1	154305124	.	T	.	.	LowGQX	END=154305129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305130	.	C	.	.	LowGQX	END=154305133	GT	./.
chr1	154305134	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305135	.	C	.	.	LowGQX	.	GT	./.
chr1	154305136	.	A	.	.	LowGQX	END=154305140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305141	.	T	.	.	LowGQX	END=154305142	GT	./.
chr1	154305143	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305144	.	G	.	.	LowGQX	.	GT	./.
chr1	154305145	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305146	.	G	.	.	LowGQX	END=154305147	GT	./.
chr1	154305148	.	C	.	.	LowGQX	END=154305153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305154	.	T	.	.	LowGQX	.	GT	./.
chr1	154305155	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305156	.	A	.	.	LowGQX	END=154305157	GT	./.
chr1	154305158	.	C	.	.	LowGQX	END=154305159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305160	.	T	.	.	LowGQX	END=154305161	GT	./.
chr1	154305162	.	C	.	.	LowGQX	END=154305168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154305169	.	T	.	.	LowGQX	.	GT	./.
chr1	154305170	.	G	.	.	LowGQX	END=154305173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305174	.	G	.	.	LowGQX	END=154305175	GT	./.
chr1	154305176	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305177	.	A	.	.	LowGQX	.	GT	./.
chr1	154305178	.	G	.	.	LowGQX	END=154305181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154305182	.	T	.	.	LowGQX	.	GT	./.
chr1	154305183	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154306581	.	A	.	.	LowGQX	END=154306698	GT	./.
chr1	154306699	.	C	.	.	LowGQX	END=154306738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154306739	.	C	.	.	LowGQX	.	GT	./.
chr1	154306740	.	A	.	.	LowGQX	END=154306743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154306974	.	T	.	.	LowGQX	END=154307073	GT	./.
chr1	154309822	.	A	.	.	LowGQX	END=154310152	GT	./.
chr1	154313328	.	A	.	.	LowGQX	END=154313540	GT	./.
chr1	154313576	.	C	.	.	LowGQX	END=154313735	GT	./.
chr1	154314928	.	C	.	.	LowGQX	END=154315027	GT	./.
chr1	154315270	.	A	.	.	LowGQX	END=154315439	GT	./.
chr1	154315587	.	A	.	.	LowGQX	END=154315779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154315927	.	A	.	.	LowGQX	END=154316019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	154316020	.	C	A	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr1	154316021	.	A	.	.	LowGQX	END=154316046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154316367	.	A	.	.	LowGQX	END=154316438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154316439	.	A	.	.	LowGQX	END=154316535	GT	./.
chr1	154316617	.	A	.	.	LowGQX	END=154316732	GT	./.
chr1	154316869	.	A	.	.	LowGQX	END=154316978	GT	./.
chr1	154317115	.	A	.	.	LowGQX	END=154317239	GT	./.
chr1	154317240	.	G	.	.	LowGQX	END=154317263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154317445	.	A	.	.	LowGQX	END=154317597	GT	./.
chr1	154317598	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154317599	.	A	.	.	LowGQX	.	GT	./.
chr1	154317600	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154317601	.	A	.	.	LowGQX	.	GT	./.
chr1	154317602	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154317603	.	G	.	.	LowGQX	.	GT	./.
chr1	154317604	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154317605	.	A	.	.	LowGQX	END=154317607	GT	./.
chr1	154317608	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154317609	.	A	.	.	LowGQX	.	GT	./.
chr1	154317610	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154317611	.	T	.	.	LowGQX	END=154317612	GT	./.
chr1	154317613	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154317614	.	T	.	.	LowGQX	.	GT	./.
chr1	154317615	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154317616	.	T	.	.	LowGQX	.	GT	./.
chr1	154317617	.	C	.	.	LowGQX	END=154317620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154317621	.	A	.	.	LowGQX	END=154317622	GT	./.
chr1	154317623	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154317624	.	A	.	.	LowGQX	END=154317625	GT	./.
chr1	154317626	.	C	.	.	LowGQX	END=154317627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154317628	.	A	.	.	LowGQX	END=154317630	GT	./.
chr1	154317631	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154317632	.	T	.	.	LowGQX	.	GT	./.
chr1	154317796	.	A	.	.	LowGQX	END=154318023	GT	./.
chr1	154318268	.	T	.	.	LowGQX	END=154318367	GT	./.
chr1	154318705	.	A	.	.	LowGQX	END=154318842	GT	./.
chr1	154318843	.	C	.	.	LowGQX	END=154318858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154318859	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	154318860	.	G	.	.	LowGQX	END=154318908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154318909	.	C	.	.	LowGQX	.	GT	./.
chr1	154318910	.	A	.	.	LowGQX	END=154318923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154318924	.	C	.	.	LowGQX	.	GT	./.
chr1	154318925	.	A	.	.	LowGQX	END=154318927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154318928	.	C	.	.	LowGQX	.	GT	./.
chr1	154318929	.	T	.	.	LowGQX	END=154318932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154318933	.	T	.	.	LowGQX	.	GT	./.
chr1	154318934	.	C	.	.	LowGQX	END=154318954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154319094	.	A	.	.	LowGQX	END=154319097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154319098	.	T	.	.	LowGQX	.	GT	./.
chr1	154319099	.	G	.	.	LowGQX	END=154319102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154319103	.	T	.	.	LowGQX	.	GT	./.
chr1	154319104	.	C	.	.	LowGQX	END=154319113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154319114	.	T	.	.	LowGQX	.	GT	./.
chr1	154319115	.	A	.	.	LowGQX	END=154319135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154319136	.	T	.	.	LowGQX	.	GT	./.
chr1	154319137	.	C	.	.	LowGQX	END=154319165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154319166	.	T	.	.	LowGQX	.	GT	./.
chr1	154319167	.	T	.	.	LowGQX	END=154319236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154320882	.	A	.	.	LowGQX	END=154320888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154320889	.	G	.	.	LowGQX	.	GT	./.
chr1	154320890	.	C	.	.	LowGQX	END=154320905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154320906	.	C	.	.	LowGQX	.	GT	./.
chr1	154320907	.	C	.	.	LowGQX	END=154320909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154320910	.	C	.	.	LowGQX	.	GT	./.
chr1	154320911	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154320912	.	C	.	.	LowGQX	.	GT	./.
chr1	154320913	.	A	.	.	LowGQX	END=154320915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154320916	.	G	.	.	LowGQX	END=154320917	GT	./.
chr1	154320918	.	G	.	.	LowGQX	END=154320919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154320920	.	G	.	.	LowGQX	.	GT	./.
chr1	154320921	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154320922	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	154320923	.	T	.	.	LowGQX	END=154320926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154320927	.	C	.	.	LowGQX	.	GT	./.
chr1	154320928	.	A	.	.	LowGQX	END=154320929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154320930	.	T	.	.	LowGQX	.	GT	./.
chr1	154320931	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154320932	.	T	.	.	LowGQX	.	GT	./.
chr1	154320933	.	G	.	.	LowGQX	END=154320935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154320936	.	C	.	.	LowGQX	END=154321016	GT	./.
chr1	154321314	.	A	.	.	LowGQX	END=154321322	GT	./.
chr1	154321323	.	A	.	.	LowGQX	END=154321355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154321356	.	A	.	.	LowGQX	.	GT	./.
chr1	154321357	.	G	.	.	LowGQX	END=154321507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154321508	.	T	.	.	LowGQX	.	GT	./.
chr1	154321509	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154321510	.	C	.	.	LowGQX	END=154321596	GT	./.
chr1	154378043	.	C	.	.	PASS	END=154378048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	154378049	.	G	.	.	PASS	END=154378053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	154378054	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr1	154378055	.	A	.	.	PASS	END=154378077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	154378078	.	A	.	.	PASS	END=154378198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	154401670	.	A	.	.	PASS	END=154401749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	154401750	.	A	.	.	PASS	END=154401876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	154401877	.	C	.	.	PASS	END=154401900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	154401901	.	T	.	.	PASS	END=154401922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	154402957	.	A	.	.	PASS	END=154403010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	154403011	.	T	.	.	PASS	END=154403067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	154403068	.	C	.	.	PASS	END=154403126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	154406993	.	A	.	.	PASS	END=154407035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	154407036	.	A	.	.	PASS	END=154407168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	154407169	.	T	.	.	PASS	END=154407178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	154407464	.	A	.	.	PASS	END=154407479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	154407480	.	C	.	.	PASS	END=154407562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	154407563	.	A	.	.	PASS	END=154407616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr1	154407617	.	A	.	.	PASS	END=154407634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	154408443	.	A	.	.	PASS	END=154408536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	154408537	.	A	.	.	PASS	END=154408588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	154409910	.	G	.	.	PASS	END=154409942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	154409943	.	A	.	.	PASS	END=154409947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	154409948	.	A	.	.	PASS	END=154409958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:60
chr1	154409959	.	A	.	.	PASS	END=154409966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:69:60
chr1	154409967	.	G	.	.	PASS	END=154409970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:72:60
chr1	154409971	.	C	.	.	PASS	END=154409976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:66:60
chr1	154409977	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:87:60
chr1	154409978	.	C	.	.	PASS	END=154409981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:60:60
chr1	154409982	.	T	.	.	PASS	END=154409984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:57:59
chr1	154409985	.	G	.	.	PASS	END=154409986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:59
chr1	154409987	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:60:59
chr1	154409988	.	C	.	.	PASS	END=154409995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:63:58
chr1	154409996	.	C	.	.	PASS	END=154409997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:58
chr1	154409998	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:58
chr1	154409999	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:99:58
chr1	154410000	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:60:58
chr1	154410001	.	C	.	.	PASS	END=154410006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:57
chr1	154410007	.	A	.	.	PASS	END=154410009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:57
chr1	154410010	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:48:57
chr1	154410011	.	T	.	.	PASS	END=154410020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:57
chr1	154417497	.	G	.	.	LowGQX	END=154417596	GT	./.
chr1	154420575	.	A	.	.	PASS	END=154420632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr1	154420633	.	T	.	.	PASS	END=154420669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	154420670	.	G	.	.	PASS	END=154420674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	154422372	.	G	.	.	PASS	END=154422471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	154426961	.	T	.	.	PASS	END=154426969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	154426970	.	A	C	884.61	PASS	BaseQRankSum=-1.097;DP=80;Dels=0.00;FS=4.528;HRun=0;HaplotypeScore=27.5984;MQ=60;MQ0=0;MQRankSum=-1.194;QD=11.06;ReadPosRankSum=-0.876;SB=-504.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:39,41:80:99:915,0,892:60:99:0.513
chr1	154426971	.	T	.	.	PASS	END=154427002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	154427003	.	T	.	.	PASS	END=154427060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	154437608	.	A	.	.	PASS	END=154437674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	154437675	.	C	.	.	PASS	END=154437844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	154437845	.	T	.	.	PASS	END=154437858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	154442780	.	T	.	.	LowGQX	END=154442854	GT	./.
chr1	154442855	.	G	.	.	LowGQX	END=154442879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154456623	.	T	.	.	LowGQX	END=154456813	GT	./.
chr1	154458417	.	A	.	.	LowGQX	END=154458540	GT	./.
chr1	154459001	.	A	.	.	LowGQX	END=154459161	GT	./.
chr1	154461525	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154461526	.	C	.	.	LowGQX	.	GT	./.
chr1	154461527	.	C	.	.	LowGQX	END=154461530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154461531	.	C	.	.	LowGQX	.	GT	./.
chr1	154461532	.	A	.	.	LowGQX	END=154461533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154461534	.	A	.	.	LowGQX	END=154461535	GT	./.
chr1	154461536	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154461537	.	C	.	.	LowGQX	.	GT	./.
chr1	154461538	.	C	.	.	LowGQX	END=154461542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154461543	.	G	.	.	LowGQX	END=154461834	GT	./.
chr1	154471586	.	A	.	.	LowGQX	END=154471716	GT	./.
chr1	154473910	.	A	.	.	LowGQX	END=154474508	GT	./.
chr1	154479331	.	C	.	.	LowGQX	END=154479430	GT	./.
chr1	154479707	.	T	.	.	LowGQX	END=154479772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154479773	.	T	.	.	LowGQX	END=154479806	GT	./.
chr1	154480879	.	A	.	.	LowGQX	END=154480978	GT	./.
chr1	154492766	.	C	.	.	LowGQX	END=154492865	GT	./.
chr1	154493797	.	A	.	.	LowGQX	END=154493957	GT	./.
chr1	154514472	.	G	.	.	LowGQX	END=154514571	GT	./.
chr1	154515203	.	C	.	.	LowGQX	END=154515267	GT	./.
chr1	154515268	.	A	.	.	LowGQX	END=154515270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154515271	.	C	.	.	LowGQX	.	GT	./.
chr1	154515272	.	T	.	.	LowGQX	END=154515276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154515277	.	T	.	.	LowGQX	.	GT	./.
chr1	154515278	.	G	.	.	LowGQX	END=154515288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154515289	.	G	.	.	LowGQX	.	GT	./.
chr1	154515290	.	G	.	.	LowGQX	END=154515292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154515293	.	A	.	.	LowGQX	END=154515294	GT	./.
chr1	154515295	.	G	.	.	LowGQX	END=154515298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154515299	.	T	.	.	LowGQX	END=154515301	GT	./.
chr1	154515302	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154516437	.	A	.	.	LowGQX	END=154516496	GT	./.
chr1	154516497	.	C	.	.	LowGQX	END=154516570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154516571	.	T	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	154516572	.	A	.	.	LowGQX	END=154516577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154516578	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	154516579	.	T	.	.	LowGQX	END=154516616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154516846	.	A	.	.	LowGQX	END=154516926	GT	./.
chr1	154516927	.	C	.	.	LowGQX	END=154516995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154517269	.	A	.	.	LowGQX	END=154517427	GT	./.
chr1	154519883	.	A	.	.	LowGQX	END=154519897	GT	./.
chr1	154519898	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154519899	.	T	.	.	LowGQX	.	GT	./.
chr1	154519900	.	A	.	.	LowGQX	END=154519914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154519915	.	G	.	.	LowGQX	END=154519916	GT	./.
chr1	154519917	.	A	.	.	LowGQX	END=154519957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154519958	.	A	.	.	LowGQX	.	GT	./.
chr1	154519959	.	A	.	.	LowGQX	END=154519997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154519998	.	C	.	.	LowGQX	.	GT	./.
chr1	154519999	.	T	.	.	LowGQX	END=154520035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154520120	.	T	.	.	LowGQX	END=154520153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154520154	.	T	.	.	LowGQX	.	GT	./.
chr1	154520155	.	T	.	.	LowGQX	END=154520176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154520177	.	G	.	.	LowGQX	END=154520178	GT	./.
chr1	154520179	.	C	.	.	LowGQX	END=154520219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154522880	.	T	.	.	LowGQX	END=154522918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154522919	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	154522920	.	G	.	.	LowGQX	END=154522931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154522932	.	G	.	.	LowGQX	END=154522935	GT	./.
chr1	154522936	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154522937	.	T	.	.	LowGQX	END=154522938	GT	./.
chr1	154522939	.	T	.	.	LowGQX	END=154522979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154523398	.	C	.	.	LowGQX	END=154523482	GT	./.
chr1	154523483	.	G	.	.	LowGQX	END=154523497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154523871	.	A	.	.	LowGQX	END=154523970	GT	./.
chr1	154524222	.	G	.	.	LowGQX	END=154524321	GT	./.
chr1	154524377	.	T	.	.	LowGQX	END=154524476	GT	./.
chr1	154524565	.	T	.	.	LowGQX	END=154524664	GT	./.
chr1	154524861	.	T	.	.	LowGQX	END=154524866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154524867	.	A	.	.	LowGQX	.	GT	./.
chr1	154524868	.	G	.	.	LowGQX	END=154524875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154524876	.	T	.	.	LowGQX	.	GT	./.
chr1	154524877	.	C	.	.	LowGQX	END=154524893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154524894	.	A	.	.	LowGQX	.	GT	./.
chr1	154524895	.	T	.	.	LowGQX	END=154524897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154524898	.	C	.	.	LowGQX	.	GT	./.
chr1	154524899	.	A	.	.	LowGQX	END=154524902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154524903	.	A	.	.	LowGQX	.	GT	./.
chr1	154524904	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154524905	.	A	.	.	LowGQX	.	GT	./.
chr1	154524906	.	C	.	.	LowGQX	END=154524919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154524920	.	C	.	.	LowGQX	.	GT	./.
chr1	154524921	.	G	.	.	LowGQX	END=154524925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154524926	.	C	.	.	LowGQX	.	GT	./.
chr1	154524927	.	G	.	.	LowGQX	END=154524928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154524929	.	C	.	.	LowGQX	.	GT	./.
chr1	154524930	.	T	.	.	LowGQX	END=154524940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154524941	.	C	.	.	LowGQX	.	GT	./.
chr1	154524942	.	T	.	.	LowGQX	END=154524945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154524946	.	A	.	.	LowGQX	.	GT	./.
chr1	154524947	.	G	.	.	LowGQX	END=154524950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154524951	.	G	.	.	LowGQX	.	GT	./.
chr1	154524952	.	G	.	.	LowGQX	END=154524953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154524954	.	A	.	.	LowGQX	.	GT	./.
chr1	154524955	.	A	.	.	LowGQX	END=154524958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154524959	.	C	.	.	LowGQX	END=154524960	GT	./.
chr1	154525205	.	A	.	.	LowGQX	END=154525230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525231	.	T	.	.	LowGQX	.	GT	./.
chr1	154525232	.	C	.	.	LowGQX	END=154525258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525259	.	A	.	.	LowGQX	END=154525279	GT	./.
chr1	154525280	.	G	.	.	LowGQX	END=154525304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525506	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525507	.	C	.	.	LowGQX	END=154525509	GT	./.
chr1	154525510	.	T	.	.	LowGQX	END=154525512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525513	.	A	.	.	LowGQX	.	GT	./.
chr1	154525514	.	G	.	.	LowGQX	END=154525519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525520	.	T	.	.	LowGQX	.	GT	./.
chr1	154525521	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525522	.	G	.	.	LowGQX	.	GT	./.
chr1	154525523	.	C	.	.	LowGQX	END=154525527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525528	.	G	.	.	LowGQX	.	GT	./.
chr1	154525529	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525530	.	T	.	.	LowGQX	END=154525531	GT	./.
chr1	154525532	.	C	.	.	LowGQX	END=154525533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525534	.	T	.	.	LowGQX	.	GT	./.
chr1	154525535	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525536	.	T	.	.	LowGQX	END=154525537	GT	./.
chr1	154525538	.	A	.	.	LowGQX	END=154525541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525542	.	T	.	.	LowGQX	.	GT	./.
chr1	154525543	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525544	.	C	.	.	LowGQX	.	GT	./.
chr1	154525545	.	T	.	.	LowGQX	END=154525546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525547	.	T	.	.	LowGQX	.	GT	./.
chr1	154525548	.	A	.	.	LowGQX	END=154525551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525552	.	T	.	.	LowGQX	END=154525553	GT	./.
chr1	154525554	.	G	.	.	LowGQX	END=154525558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525559	.	G	.	.	LowGQX	.	GT	./.
chr1	154525560	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525561	.	T	.	.	LowGQX	.	GT	./.
chr1	154525562	.	T	.	.	LowGQX	END=154525566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525567	.	T	.	.	LowGQX	.	GT	./.
chr1	154525568	.	T	.	.	LowGQX	END=154525574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525575	.	C	.	.	LowGQX	.	GT	./.
chr1	154525576	.	C	.	.	LowGQX	END=154525589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525590	.	T	.	.	LowGQX	.	GT	./.
chr1	154525591	.	T	.	.	LowGQX	END=154525592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525593	.	T	.	.	LowGQX	END=154525594	GT	./.
chr1	154525595	.	G	.	.	LowGQX	END=154525602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525603	.	C	.	.	LowGQX	.	GT	./.
chr1	154525604	.	T	.	.	LowGQX	END=154525607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525608	.	T	.	.	LowGQX	.	GT	./.
chr1	154525609	.	C	.	.	LowGQX	END=154525621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525622	.	T	.	.	LowGQX	.	GT	./.
chr1	154525623	.	T	.	.	LowGQX	END=154525627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525628	.	G	.	.	LowGQX	END=154525629	GT	./.
chr1	154525630	.	G	.	.	LowGQX	END=154525638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525639	.	C	.	.	LowGQX	.	GT	./.
chr1	154525640	.	T	.	.	LowGQX	END=154525641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525642	.	C	.	.	LowGQX	.	GT	./.
chr1	154525643	.	T	.	.	LowGQX	END=154525644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154525645	.	T	.	.	LowGQX	END=154525650	GT	./.
chr1	154527187	.	T	.	.	LowGQX	END=154527286	GT	./.
chr1	154527902	.	A	.	.	LowGQX	END=154528010	GT	./.
chr1	154528334	.	A	.	.	LowGQX	END=154528442	GT	./.
chr1	154530701	.	A	.	.	LowGQX	END=154530724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154530725	.	A	.	.	LowGQX	.	GT	./.
chr1	154530726	.	C	.	.	LowGQX	END=154530781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154530782	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	154530783	.	C	.	.	LowGQX	END=154530786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154530787	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	154530788	.	G	.	.	LowGQX	END=154530859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154530860	.	T	.	.	LowGQX	.	GT	./.
chr1	154530861	.	C	.	.	LowGQX	END=154530871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154530872	.	T	.	.	LowGQX	.	GT	./.
chr1	154530873	.	G	.	.	LowGQX	END=154530878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154530879	.	T	.	.	LowGQX	END=154530880	GT	./.
chr1	154530881	.	G	.	.	LowGQX	END=154530899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154530900	.	C	.	.	LowGQX	END=154531031	GT	./.
chr1	154540470	.	C	.	.	PASS	END=154540472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr1	154540473	.	C	.	.	PASS	END=154540479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	154540480	.	C	.	.	PASS	END=154540488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	154540489	.	G	.	.	PASS	END=154540505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr1	154540506	.	A	.	.	PASS	END=154540550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:93:60
chr1	154540551	.	C	.	.	PASS	END=154540633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	154540634	.	C	.	.	PASS	END=154540635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	154541887	.	G	.	.	PASS	END=154541902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	154541903	.	C	.	.	PASS	END=154541917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	154541918	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:46:60
chr1	154541919	.	C	.	.	PASS	END=154541929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	154541930	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:60:60
chr1	154541931	.	T	.	.	PASS	END=154541938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr1	154541939	.	G	.	.	PASS	END=154541950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	154541951	.	G	.	.	PASS	END=154542096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	154542097	.	C	.	.	PASS	END=154542119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	154542120	.	A	.	.	PASS	END=154542134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	154542217	.	T	.	.	PASS	END=154542276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	154542277	.	G	.	.	PASS	END=154542338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	154542339	.	A	.	.	PASS	END=154542363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	154542683	.	G	.	.	PASS	END=154542695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	154542696	.	G	.	.	PASS	END=154542717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	154542718	.	C	.	.	PASS	END=154542846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	154542847	.	G	.	.	PASS	END=154542883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:90:60
chr1	154542884	.	T	.	.	PASS	END=154542887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:72:60
chr1	154542888	.	G	.	.	PASS	END=154542889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	154542890	.	A	.	.	PASS	END=154542894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:63:60
chr1	154543614	.	A	.	.	PASS	END=154543615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	154543616	.	G	.	.	PASS	END=154543627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	154543628	.	G	.	.	PASS	END=154543632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr1	154543633	.	G	.	.	PASS	END=154543653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	154543654	.	T	.	.	PASS	END=154543677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	154543678	.	T	.	.	PASS	END=154543700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	154543701	.	T	.	.	PASS	END=154543727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	154543728	.	C	.	.	PASS	END=154543750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	154543751	.	A	.	.	PASS	END=154543901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	154543902	.	T	.	.	PASS	END=154544052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	154544053	.	G	.	.	PASS	END=154544154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	154544155	.	A	.	.	PASS	END=154544255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	154544256	.	C	.	.	PASS	END=154544285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	154544286	.	C	.	.	PASS	END=154544325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	154544326	.	C	.	.	PASS	END=154544430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	154544431	.	T	.	.	PASS	END=154544493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	154544494	.	T	.	.	PASS	END=154544632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	154544633	.	A	.	.	PASS	END=154544671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	154544672	.	T	.	.	PASS	END=154544688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	154548187	.	T	.	.	PASS	END=154548194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	154548195	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:71:60
chr1	154548196	.	C	.	.	PASS	END=154548207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	154548208	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:54:60
chr1	154548209	.	C	.	.	PASS	END=154548237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	154548238	.	G	.	.	PASS	END=154548272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	154548273	.	C	.	.	PASS	END=154548375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	154548376	.	C	.	.	PASS	END=154548401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	154548402	.	C	.	.	PASS	END=154548424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	154548425	.	C	.	.	PASS	END=154548452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	154548453	.	T	.	.	PASS	END=154548459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	154557231	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	154557232	.	C	.	.	PASS	END=154557236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	154557237	.	A	.	.	PASS	END=154557238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	154557239	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:9:60
chr1	154557240	.	C	.	.	PASS	END=154557248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	154557249	.	G	.	.	PASS	END=154557254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	154557255	.	C	.	.	PASS	END=154557261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	154557262	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:69:60
chr1	154557263	.	C	.	.	PASS	END=154557272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	154557273	.	T	.	.	PASS	END=154557278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	154557279	.	A	.	.	PASS	END=154557323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	154557324	.	G	.	.	PASS	END=154557411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	154557412	.	T	.	.	PASS	END=154557423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	154557424	.	A	.	.	PASS	END=154557434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	154557435	.	A	.	.	PASS	END=154557508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:60
chr1	154557509	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:76:60
chr1	154557510	.	A	.	.	PASS	END=154557513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	154557514	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:69:60
chr1	154557515	.	G	.	.	PASS	END=154557516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	154557517	.	G	.	.	PASS	END=154557518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:66:60
chr1	154557519	.	C	.	.	PASS	END=154557570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	154557642	.	T	.	.	PASS	END=154557665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:90:60
chr1	154557666	.	C	.	.	PASS	END=154557684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	154557685	.	C	T	1053.74	PASS	BaseQRankSum=-0.554;DP=90;Dels=0.00;FS=3.095;HRun=1;HaplotypeScore=3.8399;MQ=60;MQ0=0;MQRankSum=1.629;QD=11.71;ReadPosRankSum=0.217;SB=-377.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,45:90:99:1084,0,1120:60:99:0.506
chr1	154557686	.	T	.	.	PASS	END=154557730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	154557731	.	G	.	.	PASS	END=154557761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	154557762	.	C	.	.	PASS	END=154557866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	154557867	.	A	.	.	PASS	END=154557871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	154558178	.	C	.	.	PASS	END=154558220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	154558221	.	T	.	.	PASS	END=154558292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	154558293	.	A	.	.	PASS	END=154558320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	154558321	.	G	.	.	PASS	END=154558369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	154558370	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:69:75:60
chr1	154558371	.	C	.	.	PASS	END=154558378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	154558379	.	G	.	.	PASS	END=154558392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	154558606	.	C	.	.	PASS	END=154558610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	154558611	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:24:60
chr1	154558612	.	A	.	.	PASS	END=154558625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	154558626	.	C	.	.	PASS	END=154558632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	154558633	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:43:60
chr1	154558634	.	A	.	.	PASS	END=154558645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	154558646	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:62:60
chr1	154558647	.	G	.	.	PASS	END=154558683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	154558684	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:60
chr1	154558685	.	C	.	.	PASS	END=154558701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	154558702	.	A	.	.	PASS	END=154558727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:87:60
chr1	154558728	.	T	.	.	PASS	END=154558845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	154558846	.	G	.	.	PASS	END=154558864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	154558865	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:72:60
chr1	154558866	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:99:60
chr1	154558867	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:70:60
chr1	154558868	.	A	.	.	PASS	END=154558890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	154560550	.	G	.	.	PASS	END=154560576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	154560577	.	G	.	.	PASS	END=154560591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	154560592	.	A	.	.	PASS	END=154560751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr1	154560752	.	C	.	.	PASS	END=154560785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	154560976	.	T	.	.	PASS	END=154561018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	154561019	.	G	.	.	PASS	END=154561119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	154561120	.	T	.	.	PASS	END=154561146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	154561147	.	A	.	.	PASS	END=154561174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	154561175	.	A	.	.	PASS	END=154561177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	154561178	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:48:60
chr1	154561179	.	A	.	.	PASS	END=154561194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	154561195	.	A	.	.	PASS	END=154561200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	154561794	.	C	.	.	PASS	END=154561808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:83:60
chr1	154561809	.	G	.	.	PASS	END=154561841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	154561842	.	C	.	.	PASS	END=154561952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	154561953	.	A	.	.	PASS	END=154561989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	154562182	.	C	.	.	PASS	END=154562185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	154562186	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:69:60
chr1	154562187	.	G	.	.	PASS	END=154562215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:83:60
chr1	154562216	.	C	.	.	PASS	END=154562242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	154562243	.	G	.	.	PASS	END=154562309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	154562310	.	A	.	.	PASS	END=154562368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	154562369	.	T	.	.	PASS	END=154562394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	154562395	.	T	.	.	PASS	END=154562420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	154562421	.	C	.	.	PASS	END=154562455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	154562609	.	T	.	.	LowGQX	END=154562612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:57
chr1	154562613	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:57
chr1	154562614	.	A	.	.	LowGQX	END=154562615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:56
chr1	154562616	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:56
chr1	154562617	.	A	.	36.01	LowGQX	DP=4;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:4:6.02:58:6
chr1	154562618	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:58
chr1	154562619	.	C	.	39.01	LowGQX	DP=5;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.02:58:9
chr1	154562620	.	C	.	.	LowGQX	END=154562623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:58
chr1	154562624	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:58
chr1	154562625	.	G	C	47.39	LowGQ;LowGQX;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=7;HaplotypeScore=0.9469;MQ=57;MQ0=0;MQRankSum=0.736;QD=15.80;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,2:3:6.02:79,6,0:57:6:0.667
chr1	154562626	.	C	.	.	LowGQX	END=154562630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:58
chr1	154562631	.	A	.	.	LowGQX	END=154562634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	154562635	.	A	.	.	LowGQX	END=154562637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	154562638	.	C	.	.	LowGQX	END=154562639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	154562640	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	154562641	.	C	.	.	LowGQX	END=154562642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	154562643	.	A	.	.	PASS	END=154562647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	154562648	.	A	.	.	PASS	END=154562651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	154562652	.	G	.	.	PASS	END=154562653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	154562654	.	C	.	.	PASS	END=154562668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	154562669	.	C	.	.	PASS	END=154562677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	154562678	.	T	.	.	PASS	END=154562684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	154562685	.	C	.	.	PASS	END=154562705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	154562706	.	C	.	.	PASS	END=154562736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	154562737	.	C	.	.	PASS	END=154562759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	154562760	.	G	.	.	PASS	END=154562837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	154562838	.	C	.	.	PASS	END=154562867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:85:60
chr1	154562868	.	T	.	.	PASS	END=154562884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	154562885	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:51:60
chr1	154562886	.	C	.	.	PASS	END=154562898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	154562899	.	A	.	.	PASS	END=154562908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	154562909	.	G	.	.	PASS	END=154562916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	154562917	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:54:60
chr1	154562918	.	T	.	.	PASS	END=154562924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	154562925	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:33:60
chr1	154562926	.	C	.	.	PASS	END=154562936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	154569230	.	A	.	.	PASS	END=154569248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	154569249	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:36:60
chr1	154569250	.	C	.	.	PASS	END=154569251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	154569252	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:0:60
chr1	154569253	.	A	.	.	PASS	END=154569261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	154569262	.	C	.	.	PASS	END=154569265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	154569266	.	G	.	.	PASS	END=154569295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	154569296	.	G	.	.	PASS	END=154569329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	154569330	.	C	.	.	PASS	END=154569351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	154569352	.	C	.	.	PASS	END=154569376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	154569377	.	G	.	.	PASS	END=154569478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	154569479	.	A	.	.	PASS	END=154569502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	154569503	.	T	.	.	PASS	END=154569522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	154569548	.	C	.	.	PASS	END=154569592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	154569593	.	C	.	.	PASS	END=154569684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	154569685	.	T	.	.	PASS	END=154569742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	154569743	.	C	.	.	PASS	END=154569767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	154569768	.	A	.	.	PASS	END=154569794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	154570253	.	C	.	.	PASS	END=154570275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	154570276	.	A	.	.	PASS	END=154570289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	154570290	.	C	.	.	PASS	END=154570291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	154570292	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:33:60
chr1	154570293	.	G	.	.	PASS	END=154570300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	154570301	.	T	.	.	PASS	END=154570319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	154570320	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:49:60
chr1	154570321	.	G	.	.	PASS	END=154570332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	154570333	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:72:60
chr1	154570334	.	A	.	.	PASS	END=154570435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:78:60
chr1	154570436	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:99:60
chr1	154570437	.	T	.	.	PASS	END=154570439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:75:60
chr1	154570440	.	G	.	.	PASS	END=154570451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	154570452	.	T	.	.	PASS	END=154570454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	154570455	.	A	.	.	PASS	END=154570503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	154570827	.	T	.	.	PASS	END=154570884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:83:60
chr1	154570885	.	G	.	.	PASS	END=154570993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	154570994	.	C	.	.	PASS	END=154571037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	154571038	.	T	.	.	PASS	END=154571082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	154571083	.	G	.	.	PASS	END=154571101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	154571102	.	T	.	.	PASS	END=154571103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	154571104	.	A	.	.	PASS	END=154571106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	154571107	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:36:60
chr1	154571108	.	C	.	.	PASS	END=154571112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	154573466	.	G	.	.	PASS	END=154573473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	154573474	.	A	.	.	PASS	END=154573476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	154573477	.	T	.	.	PASS	END=154573478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:69:60
chr1	154573479	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:51:60
chr1	154573480	.	C	.	.	PASS	END=154573485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	154573486	.	C	.	.	PASS	END=154573496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:87:60
chr1	154573497	.	G	.	.	PASS	END=154573510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	154573511	.	T	.	.	PASS	END=154573525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	154573526	.	T	.	.	PASS	END=154573536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	154573537	.	A	.	.	PASS	END=154573567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	154573568	.	T	.	.	PASS	END=154573632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	154573633	.	T	.	.	PASS	END=154573733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	154573734	.	C	.	.	PASS	END=154573793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr1	154573794	.	A	.	.	PASS	END=154573851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:308:99:60
chr1	154573852	.	C	.	.	PASS	END=154573954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:330:99:60
chr1	154573955	.	T	.	.	PASS	END=154573966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:303:99:60
chr1	154573967	.	T	C	9415.08	PASS	BaseQRankSum=-0.746;DP=303;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=30.5549;MQ=60;MQ0=0;MQRankSum=-1.319;QD=31.07;ReadPosRankSum=0.654;SB=-2857.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,301:303:99:9415,698,0:60:99:0.997
chr1	154573968	.	T	.	.	PASS	END=154574014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:60
chr1	154574015	.	T	.	.	PASS	END=154574166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	154574167	.	A	.	.	PASS	END=154574190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:258:99:60
chr1	154574191	.	A	.	.	PASS	END=154574315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:292:99:59
chr1	154574316	.	C	.	.	PASS	END=154574339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:58
chr1	154574340	.	C	.	.	PASS	END=154574376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:58
chr1	154574377	.	T	.	.	PASS	END=154574395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:59
chr1	154574396	.	A	.	309.88	PASS	DP=218;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:165:218:99:59:99
chr1	154574397	.	G	.	.	PASS	END=154574635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:85:58
chr1	154574636	.	A	.	.	PASS	END=154574729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	154574730	.	A	.	.	PASS	END=154574795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	154574796	.	A	.	.	PASS	END=154574819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	154574820	.	T	C	4248.23	PASS	DP=126;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=8.7304;MQ=60;MQ0=0;QD=33.72;SB=-2081.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,125:126:99:4248,334,0:60:99:1.000
chr1	154574821	.	G	.	.	PASS	END=154574880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	154574881	.	A	.	.	PASS	END=154574912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	154574913	.	G	.	.	PASS	END=154575039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	154575040	.	C	T	5937.37	PASS	DP=223;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=16.1480;MQ=60;MQ0=0;QD=26.62;SB=-2182.62	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,222:223:99:5937,454,0:60:99:1.000
chr1	154575041	.	C	.	.	PASS	END=154575069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	154575070	.	T	.	.	PASS	END=154575085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	154575086	.	C	.	.	PASS	END=154575108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	154575109	.	A	.	.	PASS	END=154575147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	154575148	.	T	.	.	PASS	END=154575153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	154580395	.	A	.	.	PASS	END=154580428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	154580429	.	C	.	.	PASS	END=154580457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	154580458	.	C	A	1801.37	PASS	BaseQRankSum=2.504;DP=154;Dels=0.00;FS=5.349;HRun=0;HaplotypeScore=21.9369;MQ=60;MQ0=0;MQRankSum=1.105;QD=11.70;ReadPosRankSum=1.224;SB=-811.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:74,80:154:99:1831,0,1420:60:99:0.519
chr1	154580459	.	C	.	.	PASS	END=154580525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	154580526	.	A	.	.	PASS	END=154580533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	154600290	.	C	.	.	LowGQX	END=154600474	GT	./.
chr1	154680401	.	G	.	.	PASS	END=154680408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	154680409	.	T	.	.	PASS	END=154680418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	154680419	.	T	.	.	PASS	END=154680427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:72:60
chr1	154680428	.	T	.	.	PASS	END=154680455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	154680456	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:51:60
chr1	154680457	.	A	.	.	PASS	END=154680470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	154680471	.	G	.	.	PASS	END=154680494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	154680495	.	G	.	.	PASS	END=154680505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	154680506	.	A	.	.	PASS	END=154680531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	154680532	.	G	.	.	PASS	END=154680554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	154680555	.	A	.	.	PASS	END=154680598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	154680599	.	C	.	.	PASS	END=154680619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	154680620	.	G	.	.	PASS	END=154680739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr1	154680740	.	A	.	.	PASS	END=154680758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	154680759	.	A	.	.	PASS	END=154680783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	154680784	.	G	.	.	PASS	END=154680796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	154680797	.	A	.	.	PASS	END=154680799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	154685889	.	A	.	.	PASS	END=154685895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr1	154685896	.	G	.	.	PASS	END=154685906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	154685907	.	T	.	.	PASS	END=154685918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	154685919	.	T	.	.	PASS	END=154685926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	154685927	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:76:60
chr1	154685928	.	A	.	.	PASS	END=154685956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:94:60
chr1	154685957	.	G	.	.	PASS	END=154686035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	154686036	.	G	.	.	PASS	END=154686046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	154686047	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:74:52:60
chr1	154686048	.	C	.	.	PASS	END=154686060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	154687301	.	C	.	.	PASS	END=154687327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	154687328	.	G	.	.	PASS	END=154687336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	154687337	.	C	.	.	PASS	END=154687350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	154687351	.	C	.	.	PASS	END=154687401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:81:60
chr1	154687402	.	G	.	.	PASS	END=154687464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	154687465	.	T	.	.	PASS	END=154687491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	154687492	.	A	.	.	PASS	END=154687523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	154687524	.	T	.	.	PASS	END=154687530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	154698341	.	T	.	.	PASS	END=154698352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	154698353	.	C	.	.	PASS	END=154698367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	154698368	.	A	.	.	PASS	END=154698482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	154698483	.	A	.	.	PASS	END=154698501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:94:60
chr1	154698502	.	C	.	.	PASS	END=154698511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	154698512	.	G	.	.	PASS	END=154698518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	154698519	.	A	.	.	PASS	END=154698534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	154698535	.	A	.	.	PASS	END=154698539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	154698540	.	C	.	.	PASS	END=154698541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr1	154698542	.	T	.	.	PASS	END=154698545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	154698546	.	A	.	.	PASS	END=154698548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	154698549	.	A	.	.	PASS	END=154698553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	154705428	.	A	.	.	LowGQX	END=154705439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	154705440	.	C	.	.	PASS	END=154705450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	154705451	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	154705452	.	A	.	.	PASS	END=154705459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	154705460	.	G	.	.	PASS	END=154705465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	154705466	.	G	.	.	PASS	END=154705477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	154705478	.	C	.	.	PASS	END=154705503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	154705504	.	C	.	.	PASS	END=154705524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	154705525	.	G	.	.	PASS	END=154705570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	154705571	.	G	.	.	PASS	END=154705642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	154705643	.	T	.	.	PASS	END=154705671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	154709472	.	C	.	.	PASS	END=154709565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	154709566	.	T	.	.	PASS	END=154709571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	154744369	.	A	.	.	PASS	END=154744375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	154744376	.	T	.	.	PASS	END=154744384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	154744385	.	C	.	.	PASS	END=154744406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	154744407	.	G	.	.	PASS	END=154744431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	154744432	.	A	.	.	PASS	END=154744460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	154744461	.	C	.	.	PASS	END=154744473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	154744474	.	G	.	.	PASS	END=154744503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	154744504	.	C	.	.	PASS	END=154744511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	154744512	.	G	.	.	PASS	END=154744532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	154744533	.	T	.	.	PASS	END=154744657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:275:99:60
chr1	154744658	.	C	.	.	PASS	END=154744688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	154744689	.	C	.	.	PASS	END=154744713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	154744714	.	T	.	.	PASS	END=154744728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	154744729	.	C	.	.	PASS	END=154744776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	154744777	.	G	.	.	PASS	END=154744806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	154744807	.	C	G	2714.64	SB	DP=76;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.9461;MQ=60;MQ0=0;QD=35.72;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,76:76:99:2748,223,0:60:99:1.000
chr1	154744808	.	A	.	.	PASS	END=154744809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	154744810	.	G	.	.	PASS	END=154744824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	154744825	.	C	.	.	PASS	END=154744851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	154744852	.	A	G	1318.52	SB	DP=37;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=35.64;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,37:37:99:1352,108,0:60:99:1.000
chr1	154744853	.	T	.	.	PASS	END=154744859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	154744860	.	T	.	.	PASS	END=154744873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	154744874	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:60:60
chr1	154744875	.	G	.	.	PASS	END=154744886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	154744887	.	T	.	.	PASS	END=154744894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	154744895	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:51:60
chr1	154744896	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:78:60
chr1	154744897	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:54:60
chr1	154744898	.	G	.	.	PASS	END=154744899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	154744900	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:39:60
chr1	154744901	.	C	.	.	PASS	END=154744909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	154744910	.	G	.	.	PASS	END=154744920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	154794514	.	C	.	.	PASS	END=154794524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	154794525	.	G	.	.	PASS	END=154794530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	154794531	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:40:60
chr1	154794532	.	C	.	.	PASS	END=154794542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	154794543	.	G	.	.	PASS	END=154794562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	154794563	.	A	.	.	PASS	END=154794598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	154794599	.	C	.	.	PASS	END=154794676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	154794677	.	G	.	.	PASS	END=154794695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:96:60
chr1	154794696	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:64:60
chr1	154794697	.	G	.	.	PASS	END=154794711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:78:60
chr1	154832120	.	T	.	.	PASS	END=154832146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:87:60
chr1	154832147	.	G	.	.	PASS	END=154832169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	154832170	.	C	.	.	PASS	END=154832239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	154841457	.	T	.	.	PASS	END=154841461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	154841462	.	A	.	.	PASS	END=154841470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	154841471	.	T	.	.	PASS	END=154841481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	154841482	.	G	.	.	PASS	END=154841497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	154841498	.	C	.	.	PASS	END=154841518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	154841519	.	A	.	.	PASS	END=154841538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	154841539	.	T	.	.	PASS	END=154841572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	154841573	.	A	.	.	PASS	END=154841610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	154841611	.	A	.	.	PASS	END=154841688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	154841689	.	C	.	.	PASS	END=154841733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	154841734	.	T	.	.	PASS	END=154841832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	154841833	.	G	.	.	PASS	END=154842084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	154842085	.	A	.	.	PASS	END=154842135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	154842136	.	T	.	.	PASS	END=154842199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:58
chr1	154842199	.	G	GGCTGCTGCTGCT,GGCTGCTGCTGCTGCT	4525.34	PASS	BaseQRankSum=0.000;DP=81;FS=3.245;HaplotypeScore=496.9634;MQ=58;MQ0=0;MQRankSum=-0.182;QD=55.87;ReadPosRankSum=-1.277;SB=-2015.46	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/2:56,13,8:78:99:4525,445,470,778,0,833:58:99:0.273
chr1	154842200	.	G	.	.	PASS	END=154842242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:58
chr1	154842243	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:51:60
chr1	154842244	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:72:60
chr1	154842245	.	G	.	.	PASS	END=154842255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:87:60
chr1	154842256	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:72:60
chr1	154842257	.	G	.	.	PASS	END=154842266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:78:60
chr1	154842267	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr1	154842268	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:99:60
chr1	154842269	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr1	154842270	.	G	.	.	PASS	END=154842272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:60
chr1	154842273	.	T	.	84.13	PASS	DP=51;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:36:51:54.14:60:54
chr1	154842274	.	C	.	.	PASS	END=154842276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:75:60
chr1	154842277	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:45:60
chr1	154842278	.	G	.	.	PASS	END=154842282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	154842283	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:54:60
chr1	154842284	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:99:60
chr1	154842285	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:60:60
chr1	154842286	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:42:60
chr1	154842287	.	G	.	.	PASS	END=154842292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	154842293	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:75:60
chr1	154842294	.	T	.	78.12	PASS	DP=48;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:34:48:48.12:60:48
chr1	154842295	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:90:60
chr1	154842296	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:51:60
chr1	154842297	.	T	.	57.08	LowGQX	DP=45;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:35:45:27.09:60:27
chr1	154842298	.	G	.	.	PASS	END=154842299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	154842300	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:46:2:60
chr1	154842301	.	G	.	.	PASS	END=154842302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	154842303	.	C	.	.	PASS	END=154842305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:63:60
chr1	154842306	.	T	.	60.09	PASS	DP=42;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:31:42:30.09:60:30
chr1	154842307	.	G	.	.	PASS	END=154842308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	154842309	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:63:60
chr1	154842310	.	G	.	.	PASS	END=154842311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	154842312	.	T	.	54.06	LowGQX	DP=45;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:29:45:24.06:60:24
chr1	154842313	.	G	.	.	PASS	END=154842314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	154842315	.	T	.	60.07	PASS	DP=45;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:32:45:30.07:60:30
chr1	154842316	.	G	.	.	PASS	END=154842329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:59
chr1	154842330	.	T	.	20.97	LowGQX	DP=58;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:40:58:0.51:59:1
chr1	154842331	.	T	.	.	PASS	END=154842368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:59
chr1	154842369	.	T	.	.	PASS	END=154842378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	154842379	.	C	.	.	PASS	END=154842387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	154842388	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:57:60
chr1	154842389	.	C	.	.	PASS	END=154842400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	154842401	.	C	.	.	PASS	END=154842414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	154842415	.	T	.	.	PASS	END=154842422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr1	154842423	.	G	.	.	PASS	END=154842433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	154842434	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	154842435	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:42:60
chr1	154842436	.	T	.	.	PASS	END=154842438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	154842439	.	A	.	.	PASS	END=154842453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	154842454	.	T	.	.	PASS	END=154842456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	154842457	.	A	.	.	PASS	END=154842472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	154842473	.	G	.	.	PASS	END=154842485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	154842486	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	154842487	.	G	.	.	PASS	END=154842493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	154842494	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	154842495	.	C	.	.	PASS	END=154842506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	154842507	.	G	.	.	LowGQX	END=154842508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	154842509	.	C	.	.	PASS	END=154842514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	154842515	.	A	.	.	LowGQX	END=154842525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	154842526	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	154842527	.	A	.	.	LowGQX	END=154842530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	154842531	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	154842532	.	A	.	.	LowGQX	END=154842536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	154842537	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	154842538	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	154842539	.	C	.	.	PASS	END=154842540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	154842541	.	A	.	.	LowGQX	END=154842555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	154842556	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr1	154842557	.	C	.	.	LowGQX	END=154842572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	154842573	.	T	.	.	LowGQX	END=154842580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	154842581	.	G	.	.	LowGQX	END=154842582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	154842583	.	T	.	10.85	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.05:60:0
chr1	154842584	.	C	.	.	LowGQX	END=154842608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	154842609	.	G	.	.	LowGQX	END=154842622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	154842623	.	A	.	.	LowGQX	END=154842656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154842657	.	G	.	.	LowGQX	END=154842725	GT	./.
chr1	154897603	.	G	.	.	LowGQX	END=154897743	GT	./.
chr1	154898828	.	A	.	.	LowGQX	END=154898961	GT	./.
chr1	154901498	.	A	.	.	LowGQX	END=154901572	GT	./.
chr1	154901573	.	C	.	.	LowGQX	END=154901654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154904750	.	A	.	.	LowGQX	END=154904909	GT	./.
chr1	154909065	.	A	.	.	LowGQX	END=154909164	GT	./.
chr1	154917497	.	G	.	.	LowGQX	END=154917501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154917502	.	A	.	.	LowGQX	.	GT	./.
chr1	154917503	.	G	.	.	LowGQX	END=154917556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154917557	.	T	.	.	LowGQX	.	GT	./.
chr1	154917558	.	C	.	.	LowGQX	END=154917596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154918046	.	A	.	.	LowGQX	END=154918192	GT	./.
chr1	154918193	.	G	.	.	LowGQX	END=154918373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154918374	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	154918375	.	T	.	.	LowGQX	END=154918412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154918413	.	C	.	.	LowGQX	END=154918470	GT	./.
chr1	154918471	.	C	.	.	LowGQX	END=154918658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154918659	.	A	.	.	LowGQX	END=154919210	GT	./.
chr1	154919211	.	G	.	.	LowGQX	END=154919274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154919275	.	T	.	.	LowGQX	.	GT	./.
chr1	154919276	.	G	.	.	LowGQX	END=154919281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154919721	.	C	.	.	LowGQX	END=154920026	GT	./.
chr1	154920104	.	A	.	.	LowGQX	END=154920203	GT	./.
chr1	154920360	.	G	.	.	LowGQX	END=154920367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920368	.	A	.	.	LowGQX	.	GT	./.
chr1	154920369	.	A	.	.	LowGQX	END=154920373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920374	.	A	.	.	LowGQX	END=154920376	GT	./.
chr1	154920377	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920378	.	C	.	.	LowGQX	.	GT	./.
chr1	154920379	.	C	.	.	LowGQX	END=154920382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920383	.	C	.	.	LowGQX	END=154920384	GT	./.
chr1	154920385	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920386	.	C	.	.	LowGQX	END=154920387	GT	./.
chr1	154920388	.	C	.	.	LowGQX	END=154920394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920395	.	T	.	.	LowGQX	.	GT	./.
chr1	154920396	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920397	.	A	.	.	LowGQX	END=154920398	GT	./.
chr1	154920399	.	C	.	.	LowGQX	END=154920401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920402	.	C	.	.	LowGQX	.	GT	./.
chr1	154920403	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920404	.	G	.	.	LowGQX	END=154920405	GT	./.
chr1	154920406	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920407	.	C	.	.	LowGQX	.	GT	./.
chr1	154920408	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920409	.	A	.	.	LowGQX	.	GT	./.
chr1	154920410	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920411	.	A	.	.	LowGQX	.	GT	./.
chr1	154920412	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920413	.	A	.	.	LowGQX	END=154920519	GT	./.
chr1	154920607	.	A	.	.	LowGQX	END=154920609	GT	./.
chr1	154920610	.	T	.	.	LowGQX	END=154920611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920612	.	A	.	.	LowGQX	.	GT	./.
chr1	154920613	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920614	.	A	.	.	LowGQX	.	GT	./.
chr1	154920615	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920616	.	G	.	.	LowGQX	.	GT	./.
chr1	154920617	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920618	.	G	.	.	LowGQX	.	GT	./.
chr1	154920619	.	G	.	.	LowGQX	END=154920620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920621	.	G	.	.	LowGQX	END=154920622	GT	./.
chr1	154920623	.	A	.	.	LowGQX	END=154920624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920625	.	C	.	.	LowGQX	END=154920627	GT	./.
chr1	154920628	.	C	.	.	LowGQX	END=154920631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920632	.	C	.	.	LowGQX	END=154920635	GT	./.
chr1	154920636	.	G	.	.	LowGQX	END=154920637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920638	.	A	.	.	LowGQX	END=154920639	GT	./.
chr1	154920640	.	A	.	.	LowGQX	END=154920641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920642	.	C	.	.	LowGQX	.	GT	./.
chr1	154920643	.	C	.	.	LowGQX	END=154920644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920645	.	G	.	.	LowGQX	.	GT	./.
chr1	154920646	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920647	.	G	.	.	LowGQX	END=154920648	GT	./.
chr1	154920649	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920650	.	C	.	.	LowGQX	.	GT	./.
chr1	154920651	.	C	.	.	LowGQX	END=154920653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920654	.	G	.	.	LowGQX	.	GT	./.
chr1	154920655	.	G	.	.	LowGQX	END=154920656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920657	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	154920658	.	G	.	.	LowGQX	END=154920660	GT	./.
chr1	154920661	.	C	.	.	LowGQX	END=154920668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920669	.	G	.	.	LowGQX	END=154920671	GT	./.
chr1	154920672	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920673	.	G	.	.	LowGQX	END=154920781	GT	./.
chr1	154920782	.	T	.	.	LowGQX	END=154920801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920802	.	A	.	.	LowGQX	.	GT	./.
chr1	154920803	.	T	.	.	LowGQX	END=154920815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920816	.	A	.	.	LowGQX	.	GT	./.
chr1	154920817	.	G	.	.	LowGQX	END=154920818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920819	.	A	.	.	LowGQX	.	GT	./.
chr1	154920820	.	G	.	.	LowGQX	END=154920846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154920847	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	154920848	.	G	.	.	LowGQX	END=154920854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	154920855	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	154920856	.	C	.	.	LowGQX	END=154920857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	154920858	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	154920859	.	G	.	.	LowGQX	END=154920865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	154920866	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	154920867	.	C	.	.	LowGQX	END=154920873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	154920874	.	G	.	32.98	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3:60:3
chr1	154920875	.	T	.	.	LowGQX	END=154920883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	154920884	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	154920885	.	G	.	.	LowGQX	END=154920889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	154920890	.	G	.	.	LowGQX	.	GT	./.
chr1	154920891	.	G	.	.	LowGQX	END=154920893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	154920894	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	154920895	.	C	.	.	LowGQX	END=154920898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	154920899	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	154920900	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	154920901	.	G	.	.	LowGQX	END=154920904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	154920905	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	154920906	.	A	.	.	LowGQX	END=154920907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	154920908	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	154920909	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr1	154920910	.	G	.	.	LowGQX	END=154920911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	154923706	.	A	.	.	LowGQX	END=154923875	GT	./.
chr1	154923930	.	A	.	.	LowGQX	END=154924029	GT	./.
chr1	154924219	.	A	.	.	LowGQX	END=154924249	GT	./.
chr1	154924250	.	G	.	.	LowGQX	END=154924399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154926123	.	G	.	.	LowGQX	END=154926222	GT	./.
chr1	154931253	.	C	.	.	LowGQX	END=154932324	GT	./.
chr1	154933368	.	T	.	.	LowGQX	END=154933527	GT	./.
chr1	154933897	.	G	.	.	LowGQX	END=154933908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154933909	.	T	.	.	LowGQX	END=154934054	GT	./.
chr1	154936277	.	G	.	.	LowGQX	END=154936409	GT	./.
chr1	154936565	.	T	.	.	LowGQX	END=154936844	GT	./.
chr1	154937845	.	C	.	.	LowGQX	END=154937925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154937926	.	T	.	.	LowGQX	END=154938259	GT	./.
chr1	154938420	.	A	.	.	LowGQX	END=154938558	GT	./.
chr1	154938623	.	C	.	.	LowGQX	END=154938722	GT	./.
chr1	154938793	.	A	.	.	LowGQX	END=154938995	GT	./.
chr1	154940145	.	A	.	.	LowGQX	.	GT	./.
chr1	154940146	.	C	.	.	LowGQX	END=154940151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940152	.	A	.	.	LowGQX	.	GT	./.
chr1	154940153	.	T	.	.	LowGQX	END=154940154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940155	.	A	.	.	LowGQX	.	GT	./.
chr1	154940156	.	G	.	.	LowGQX	END=154940157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940158	.	G	.	.	LowGQX	.	GT	./.
chr1	154940159	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940160	.	T	.	.	LowGQX	.	GT	./.
chr1	154940161	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940162	.	A	.	.	LowGQX	END=154940164	GT	./.
chr1	154940165	.	A	.	.	LowGQX	END=154940169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940170	.	G	.	.	LowGQX	.	GT	./.
chr1	154940171	.	G	.	.	LowGQX	END=154940172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940173	.	T	.	.	LowGQX	.	GT	./.
chr1	154940174	.	G	.	.	LowGQX	END=154940179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940180	.	C	.	.	LowGQX	.	GT	./.
chr1	154940181	.	T	.	.	LowGQX	END=154940197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940198	.	C	.	.	LowGQX	END=154940200	GT	./.
chr1	154940201	.	A	.	.	LowGQX	END=154940204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940205	.	C	.	.	LowGQX	.	GT	./.
chr1	154940206	.	G	.	.	LowGQX	END=154940210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940211	.	C	.	.	LowGQX	.	GT	./.
chr1	154940212	.	C	.	.	LowGQX	END=154940213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940214	.	G	.	.	LowGQX	.	GT	./.
chr1	154940215	.	G	.	.	LowGQX	END=154940221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940222	.	G	.	.	LowGQX	.	GT	./.
chr1	154940223	.	T	.	.	LowGQX	END=154940234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940235	.	C	.	.	LowGQX	END=154940236	GT	./.
chr1	154940237	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940238	.	G	.	.	LowGQX	.	GT	./.
chr1	154940239	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940240	.	G	.	.	LowGQX	.	GT	./.
chr1	154940241	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940242	.	A	.	.	LowGQX	.	GT	./.
chr1	154940243	.	A	.	.	LowGQX	END=154940246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940247	.	C	.	.	LowGQX	.	GT	./.
chr1	154940248	.	T	.	.	LowGQX	END=154940251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940252	.	G	.	.	LowGQX	.	GT	./.
chr1	154940253	.	G	.	.	LowGQX	END=154940265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154940266	.	G	.	.	LowGQX	END=154940275	GT	./.
chr1	154940432	.	C	.	.	LowGQX	END=154940531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154940657	.	C	.	.	LowGQX	END=154940741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154940742	.	T	.	.	LowGQX	END=154940756	GT	./.
chr1	154940969	.	A	.	.	LowGQX	END=154941092	GT	./.
chr1	154941229	.	C	.	.	LowGQX	END=154941328	GT	./.
chr1	154941840	.	C	.	.	LowGQX	END=154941939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154942506	.	A	.	.	LowGQX	END=154943013	GT	./.
chr1	154947202	.	G	.	.	LowGQX	END=154947301	GT	./.
chr1	154947333	.	G	.	.	LowGQX	END=154947363	GT	./.
chr1	154947364	.	G	.	.	LowGQX	END=154947432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154950461	.	A	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	154950462	.	G	.	.	LowGQX	END=154950607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154951178	.	T	.	.	LowGQX	END=154951202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154951203	.	C	.	.	LowGQX	.	GT	./.
chr1	154951204	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154951205	.	T	.	.	LowGQX	.	GT	./.
chr1	154951206	.	C	.	.	LowGQX	END=154951228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154951229	.	A	.	.	LowGQX	.	GT	./.
chr1	154951230	.	C	.	.	LowGQX	END=154951249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154951250	.	A	.	.	LowGQX	END=154951277	GT	./.
chr1	154956169	.	A	.	.	LowGQX	END=154956451	GT	./.
chr1	154956452	.	A	.	.	LowGQX	END=154956494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154956495	.	C	.	.	LowGQX	.	GT	./.
chr1	154956496	.	G	.	.	LowGQX	END=154956501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154956502	.	T	.	.	LowGQX	.	GT	./.
chr1	154956503	.	G	.	.	LowGQX	END=154956544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154960505	.	G	.	.	LowGQX	END=154960510	GT	./.
chr1	154960511	.	G	.	.	LowGQX	END=154960613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154960614	.	T	.	.	LowGQX	.	GT	./.
chr1	154960615	.	G	.	.	LowGQX	END=154960644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154960645	.	T	.	.	LowGQX	END=154961266	GT	./.
chr1	154961267	.	C	.	.	LowGQX	END=154961390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154962034	.	A	.	.	LowGQX	END=154962185	GT	./.
chr1	154962633	.	A	.	.	LowGQX	END=154962676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154962677	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	154962678	.	C	.	.	LowGQX	END=154962734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154962735	.	T	.	.	LowGQX	END=154962740	GT	./.
chr1	154962813	.	A	.	.	LowGQX	END=154963006	GT	./.
chr1	154965040	.	G	.	.	LowGQX	END=154965139	GT	./.
chr1	154965177	.	C	.	.	LowGQX	END=154965276	GT	./.
chr1	154965376	.	A	.	.	LowGQX	END=154965515	GT	./.
chr1	154966071	.	A	.	.	LowGQX	END=154966281	GT	./.
chr1	154983394	.	A	.	.	LowGQX	END=154983493	GT	./.
chr1	154987130	.	G	.	.	LowGQX	END=154987164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154987165	.	G	.	.	LowGQX	.	GT	./.
chr1	154987166	.	G	.	.	LowGQX	END=154987189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154987190	.	T	.	.	LowGQX	.	GT	./.
chr1	154987191	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154987192	.	A	.	.	LowGQX	.	GT	./.
chr1	154987193	.	G	.	.	LowGQX	END=154987197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154987198	.	T	.	.	LowGQX	.	GT	./.
chr1	154987199	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154987200	.	A	.	.	LowGQX	.	GT	./.
chr1	154987201	.	G	.	.	LowGQX	END=154987202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154987203	.	T	.	.	LowGQX	.	GT	./.
chr1	154987204	.	G	.	.	LowGQX	END=154987210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154987211	.	T	.	.	LowGQX	END=154987212	GT	./.
chr1	154987213	.	A	.	.	LowGQX	END=154987263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154987264	.	T	.	.	LowGQX	.	GT	./.
chr1	154987265	.	T	.	.	LowGQX	END=154987271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154987272	.	C	.	.	LowGQX	END=154988292	GT	./.
chr1	154988694	.	A	.	.	LowGQX	END=154988789	GT	./.
chr1	154988790	.	C	.	.	LowGQX	END=154988898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154988899	.	A	.	.	LowGQX	.	GT	./.
chr1	154988900	.	C	.	.	LowGQX	END=154988907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154988908	.	A	.	.	LowGQX	.	GT	./.
chr1	154988909	.	G	.	.	LowGQX	END=154988912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154988913	.	C	.	.	LowGQX	END=154989163	GT	./.
chr1	154991018	.	G	.	.	LowGQX	END=154991044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154991045	.	T	.	.	LowGQX	.	GT	./.
chr1	154991046	.	C	.	.	LowGQX	END=154991091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154991092	.	A	.	.	LowGQX	.	GT	./.
chr1	154991093	.	G	.	.	LowGQX	END=154991100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154991101	.	T	.	.	LowGQX	.	GT	./.
chr1	154991102	.	C	.	.	LowGQX	END=154991118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154991119	.	T	.	.	LowGQX	.	GT	./.
chr1	154991120	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154991121	.	T	.	.	LowGQX	.	GT	./.
chr1	154991122	.	C	.	.	LowGQX	END=154991127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154991128	.	T	.	.	LowGQX	.	GT	./.
chr1	154991129	.	G	.	.	LowGQX	END=154991140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154991141	.	T	.	.	LowGQX	.	GT	./.
chr1	154991142	.	C	.	.	LowGQX	END=154991174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154991175	.	C	.	.	LowGQX	END=154991238	GT	./.
chr1	154995591	.	A	.	.	LowGQX	END=154995627	GT	./.
chr1	154995628	.	G	.	.	LowGQX	END=154995641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154995642	.	G	.	.	LowGQX	.	GT	./.
chr1	154995643	.	G	.	.	LowGQX	END=154995644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154995645	.	G	.	.	LowGQX	.	GT	./.
chr1	154995646	.	C	.	.	LowGQX	END=154995655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154995656	.	A	.	.	LowGQX	.	GT	./.
chr1	154995657	.	A	.	.	LowGQX	END=154995735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154995837	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154995838	.	A	.	.	LowGQX	.	GT	./.
chr1	154995839	.	C	.	.	LowGQX	END=154995840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154995841	.	G	.	.	LowGQX	.	GT	./.
chr1	154995842	.	C	.	.	LowGQX	END=154995854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154995855	.	T	.	.	LowGQX	.	GT	./.
chr1	154995856	.	C	.	.	LowGQX	END=154995860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154995861	.	T	.	.	LowGQX	.	GT	./.
chr1	154995862	.	G	.	.	LowGQX	END=154995869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154995870	.	A	.	.	LowGQX	END=154995936	GT	./.
chr1	154996022	.	C	.	.	LowGQX	END=154996121	GT	./.
chr1	154996306	.	A	.	.	LowGQX	END=154996313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154996314	.	A	.	.	LowGQX	END=154996437	GT	./.
chr1	154996946	.	A	.	.	LowGQX	END=154997042	GT	./.
chr1	154997043	.	G	.	.	LowGQX	END=154997053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154997054	.	C	.	.	LowGQX	.	GT	./.
chr1	154997055	.	A	.	.	LowGQX	END=154997075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154997076	.	C	.	.	LowGQX	.	GT	./.
chr1	154997077	.	T	.	.	LowGQX	END=154997080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	154998776	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	154998777	.	C	.	.	LowGQX	END=154998866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	154998867	.	C	.	.	LowGQX	END=154998880	GT	./.
chr1	154999022	.	A	.	.	LowGQX	END=154999193	GT	./.
chr1	155001707	.	A	.	.	LowGQX	END=155001875	GT	./.
chr1	155002558	.	A	.	.	LowGQX	END=155002719	GT	./.
chr1	155002906	.	A	.	.	LowGQX	END=155003025	GT	./.
chr1	155003026	.	G	.	.	LowGQX	END=155003121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155003122	.	C	.	.	LowGQX	END=155003123	GT	./.
chr1	155003573	.	G	.	.	LowGQX	END=155003612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155003613	.	A	.	.	LowGQX	END=155003727	GT	./.
chr1	155004048	.	A	.	.	LowGQX	END=155004249	GT	./.
chr1	155005141	.	A	.	.	LowGQX	.	GT	./.
chr1	155005142	.	C	.	.	LowGQX	END=155005147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155005148	.	T	.	.	LowGQX	END=155005246	GT	./.
chr1	155005568	.	A	.	.	LowGQX	END=155005742	GT	./.
chr1	155005908	.	A	.	.	LowGQX	END=155005914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155005915	.	A	.	.	LowGQX	.	GT	./.
chr1	155005916	.	A	.	.	LowGQX	END=155005917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155005918	.	G	.	.	LowGQX	.	GT	./.
chr1	155005919	.	C	.	.	LowGQX	END=155005920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155005921	.	T	.	.	LowGQX	.	GT	./.
chr1	155005922	.	G	.	.	LowGQX	END=155005928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155005929	.	C	.	.	LowGQX	.	GT	./.
chr1	155005930	.	A	.	.	LowGQX	END=155005941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155005942	.	G	.	.	LowGQX	END=155005943	GT	./.
chr1	155005944	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155005945	.	G	.	.	LowGQX	.	GT	./.
chr1	155005946	.	C	.	.	LowGQX	END=155005958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155005959	.	A	.	.	LowGQX	END=155006179	GT	./.
chr1	155006494	.	G	.	.	LowGQX	END=155006593	GT	./.
chr1	155006814	.	G	.	.	LowGQX	END=155007038	GT	./.
chr1	155007117	.	T	.	.	LowGQX	END=155007216	GT	./.
chr1	155011877	.	A	.	.	LowGQX	END=155012009	GT	./.
chr1	155012959	.	A	.	.	LowGQX	END=155013102	GT	./.
chr1	155013871	.	A	.	.	LowGQX	END=155013995	GT	./.
chr1	155013996	.	G	.	.	LowGQX	END=155014091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155014188	.	A	.	.	LowGQX	END=155014335	GT	./.
chr1	155015209	.	A	.	.	LowGQX	END=155015334	GT	./.
chr1	155015805	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155015806	.	T	.	.	LowGQX	.	GT	./.
chr1	155015807	.	T	.	.	LowGQX	END=155015809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155015810	.	T	.	.	LowGQX	.	GT	./.
chr1	155015811	.	C	.	.	LowGQX	END=155015824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155015825	.	C	.	.	LowGQX	.	GT	./.
chr1	155015826	.	A	.	.	LowGQX	END=155015876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155015877	.	T	.	.	LowGQX	.	GT	./.
chr1	155015878	.	G	.	.	LowGQX	END=155015884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155015885	.	G	.	.	LowGQX	.	GT	./.
chr1	155015886	.	A	.	.	LowGQX	END=155015900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155015901	.	T	.	.	LowGQX	.	GT	./.
chr1	155015902	.	G	.	.	LowGQX	END=155015903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155015904	.	A	.	.	LowGQX	.	GT	./.
chr1	155015905	.	C	.	.	LowGQX	END=155015927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155015928	.	G	.	.	LowGQX	END=155015987	GT	./.
chr1	155018367	.	A	.	.	LowGQX	END=155018470	GT	./.
chr1	155018599	.	A	.	.	LowGQX	END=155018698	GT	./.
chr1	155018834	.	A	.	.	LowGQX	END=155018853	GT	./.
chr1	155018854	.	A	.	.	LowGQX	END=155018855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155018856	.	A	.	.	LowGQX	.	GT	./.
chr1	155018857	.	C	.	.	LowGQX	END=155018922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155018923	.	A	.	.	LowGQX	.	GT	./.
chr1	155018924	.	C	.	.	LowGQX	END=155018958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155018959	.	C	.	.	LowGQX	.	GT	./.
chr1	155018960	.	G	.	.	LowGQX	END=155018964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155019615	.	A	.	.	LowGQX	END=155019619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155019620	.	T	.	.	LowGQX	.	GT	./.
chr1	155019621	.	T	.	.	LowGQX	END=155019624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155019625	.	G	.	.	LowGQX	.	GT	./.
chr1	155019626	.	A	.	.	LowGQX	END=155019750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155019751	.	C	.	.	LowGQX	.	GT	./.
chr1	155019752	.	A	.	.	LowGQX	END=155019754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155019755	.	T	.	.	LowGQX	END=155019757	GT	./.
chr1	155019758	.	T	.	.	LowGQX	END=155019760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155019761	.	G	.	.	LowGQX	.	GT	./.
chr1	155019762	.	A	.	.	LowGQX	END=155019764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155019765	.	C	.	.	LowGQX	.	GT	./.
chr1	155019766	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155019767	.	G	.	.	LowGQX	.	GT	./.
chr1	155019768	.	T	.	.	LowGQX	END=155019772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155019773	.	G	.	.	LowGQX	END=155019774	GT	./.
chr1	155019775	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155019776	.	T	.	.	LowGQX	.	GT	./.
chr1	155019777	.	C	.	.	LowGQX	END=155019780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155019781	.	C	.	.	LowGQX	.	GT	./.
chr1	155019782	.	A	.	.	LowGQX	END=155019783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155019784	.	C	.	.	LowGQX	.	GT	./.
chr1	155019785	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	155019786	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155019787	.	G	.	.	LowGQX	.	GT	./.
chr1	155019788	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155019789	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	155019790	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155020261	.	A	.	.	LowGQX	END=155020407	GT	./.
chr1	155020531	.	A	.	.	LowGQX	END=155020648	GT	./.
chr1	155021469	.	G	.	.	LowGQX	END=155021595	GT	./.
chr1	155023091	.	A	.	.	LowGQX	END=155023329	GT	./.
chr1	155023330	.	G	.	.	LowGQX	END=155023346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155023800	.	C	.	.	LowGQX	END=155024010	GT	./.
chr1	155024972	.	A	.	.	LowGQX	END=155025071	GT	./.
chr1	155025096	.	C	.	.	LowGQX	END=155025115	GT	./.
chr1	155025116	.	G	.	.	LowGQX	END=155025190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155025191	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	155025192	.	A	.	.	LowGQX	END=155025255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155025882	.	G	.	.	LowGQX	END=155025981	GT	./.
chr1	155026376	.	C	.	.	LowGQX	END=155026475	GT	./.
chr1	155026564	.	C	.	.	LowGQX	END=155026714	GT	./.
chr1	155026788	.	A	.	.	LowGQX	END=155026984	GT	./.
chr1	155028248	.	T	.	.	LowGQX	END=155028301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155028302	.	T	.	.	LowGQX	END=155028347	GT	./.
chr1	155028393	.	T	.	.	LowGQX	END=155028492	GT	./.
chr1	155028554	.	A	.	.	LowGQX	END=155028727	GT	./.
chr1	155028855	.	C	.	.	LowGQX	END=155028954	GT	./.
chr1	155029427	.	A	.	.	LowGQX	END=155029579	GT	./.
chr1	155029662	.	A	.	.	LowGQX	.	GT	./.
chr1	155029663	.	G	.	.	LowGQX	END=155029764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155029765	.	T	.	.	LowGQX	END=155029840	GT	./.
chr1	155030110	.	C	.	.	LowGQX	END=155030209	GT	./.
chr1	155030325	.	A	.	.	LowGQX	END=155030633	GT	./.
chr1	155030720	.	A	.	.	LowGQX	END=155030843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155030844	.	T	.	.	LowGQX	.	GT	./.
chr1	155030845	.	G	.	.	LowGQX	END=155030862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155030863	.	T	.	.	LowGQX	.	GT	./.
chr1	155030864	.	G	.	.	LowGQX	END=155030865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155030866	.	T	.	.	LowGQX	.	GT	./.
chr1	155030867	.	G	.	.	LowGQX	END=155030938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155030939	.	G	.	.	LowGQX	END=155030950	GT	./.
chr1	155031115	.	A	.	.	LowGQX	END=155031274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155032365	.	T	.	.	LowGQX	END=155032464	GT	./.
chr1	155032679	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155032680	.	G	.	.	LowGQX	.	GT	./.
chr1	155032681	.	C	.	.	LowGQX	END=155032691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155032692	.	C	.	.	LowGQX	.	GT	./.
chr1	155032693	.	T	.	.	LowGQX	END=155032708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155032709	.	C	.	.	LowGQX	.	GT	./.
chr1	155032710	.	C	.	.	LowGQX	END=155032722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155032723	.	T	.	.	LowGQX	.	GT	./.
chr1	155032724	.	C	.	.	LowGQX	END=155032731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155032732	.	T	.	.	LowGQX	.	GT	./.
chr1	155032733	.	C	.	.	LowGQX	END=155032821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155033224	.	T	.	.	LowGQX	END=155033323	GT	./.
chr1	155033889	.	A	.	.	LowGQX	END=155033992	GT	./.
chr1	155034378	.	A	.	.	LowGQX	END=155034493	GT	./.
chr1	155034719	.	A	.	.	LowGQX	END=155034720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155034721	.	T	.	.	LowGQX	.	GT	./.
chr1	155034722	.	C	.	.	LowGQX	END=155034726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155034727	.	G	.	.	LowGQX	.	GT	./.
chr1	155034728	.	G	.	.	LowGQX	END=155034737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155034738	.	G	.	.	LowGQX	.	GT	./.
chr1	155034739	.	C	.	.	LowGQX	END=155034888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155034908	.	T	.	.	LowGQX	END=155034909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155034910	.	T	.	.	LowGQX	.	GT	./.
chr1	155034911	.	T	.	.	LowGQX	END=155034917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155034918	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	155034919	.	G	.	.	LowGQX	END=155034921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155034922	.	T	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	155034923	.	T	.	.	LowGQX	END=155034947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155034948	.	G	T	14.90	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.45;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	155034949	.	C	.	.	LowGQX	END=155035007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155036298	.	C	.	.	LowGQX	END=155036457	GT	./.
chr1	155039204	.	A	.	.	LowGQX	END=155039227	GT	./.
chr1	155039228	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155039229	.	T	.	.	LowGQX	.	GT	./.
chr1	155039230	.	G	.	.	LowGQX	END=155039234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155039235	.	T	.	.	LowGQX	.	GT	./.
chr1	155039236	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155039237	.	G	.	.	LowGQX	.	GT	./.
chr1	155039238	.	G	.	.	LowGQX	END=155039243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155039244	.	A	.	.	LowGQX	.	GT	./.
chr1	155039245	.	C	.	.	LowGQX	END=155039249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155039250	.	A	.	.	LowGQX	.	GT	./.
chr1	155039251	.	C	.	.	LowGQX	END=155039279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155039280	.	G	.	.	LowGQX	.	GT	./.
chr1	155039281	.	C	.	.	LowGQX	END=155039288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155039289	.	C	.	.	LowGQX	.	GT	./.
chr1	155039290	.	C	.	.	LowGQX	END=155039298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155039299	.	C	.	.	LowGQX	.	GT	./.
chr1	155039300	.	C	.	.	LowGQX	END=155039368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155039369	.	G	.	.	LowGQX	.	GT	./.
chr1	155039370	.	C	.	.	LowGQX	END=155039371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155039372	.	T	.	.	LowGQX	.	GT	./.
chr1	155039373	.	A	.	.	LowGQX	END=155039377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155039378	.	C	.	.	LowGQX	END=155039494	GT	./.
chr1	155039833	.	T	.	.	LowGQX	END=155039841	GT	./.
chr1	155039842	.	A	.	.	LowGQX	END=155039932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155041327	.	A	.	.	LowGQX	END=155041467	GT	./.
chr1	155041473	.	A	.	.	LowGQX	END=155041672	GT	./.
chr1	155051385	.	A	.	.	LowGQX	.	GT	./.
chr1	155051386	.	G	.	.	LowGQX	END=155051507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155051508	.	A	.	.	LowGQX	END=155051547	GT	./.
chr1	155057562	.	C	.	.	LowGQX	END=155057882	GT	./.
chr1	155058336	.	C	.	.	LowGQX	END=155058435	GT	./.
chr1	155058593	.	C	.	.	LowGQX	END=155058603	GT	./.
chr1	155058604	.	C	.	.	LowGQX	END=155058626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155058627	.	G	.	.	LowGQX	END=155058662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	155058663	.	G	A	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=4.771;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.05;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.29:30,0,70:60:3:0.333
chr1	155058664	.	T	.	.	LowGQX	END=155058665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	155058666	.	A	.	.	LowGQX	END=155058667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	155058668	.	G	.	.	LowGQX	END=155058672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	155058673	.	A	.	.	LowGQX	END=155058686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	155058687	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	155058688	.	C	.	.	LowGQX	END=155058692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	155058887	.	A	.	.	LowGQX	END=155058891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155058892	.	A	.	.	LowGQX	.	GT	./.
chr1	155058893	.	C	.	.	LowGQX	END=155058925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155058926	.	T	.	.	LowGQX	.	GT	./.
chr1	155058927	.	G	.	.	LowGQX	END=155058936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155058937	.	T	.	.	LowGQX	.	GT	./.
chr1	155058938	.	C	.	.	LowGQX	END=155058947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155058948	.	A	.	.	LowGQX	END=155058949	GT	./.
chr1	155058950	.	C	.	.	LowGQX	END=155058965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155058966	.	C	.	.	LowGQX	END=155059001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	155059002	.	A	.	.	LowGQX	.	GT	./.
chr1	155059003	.	C	.	.	LowGQX	END=155059021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155100450	.	C	.	.	LowGQX	END=155100549	GT	./.
chr1	155103813	.	A	.	.	LowGQX	END=155103823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155103824	.	T	.	.	LowGQX	END=155104112	GT	./.
chr1	155105962	.	G	.	.	LowGQX	END=155106061	GT	./.
chr1	155106182	.	T	.	.	LowGQX	.	GT	./.
chr1	155106183	.	C	.	.	LowGQX	END=155106197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155106198	.	T	.	.	LowGQX	.	GT	./.
chr1	155106199	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155106200	.	T	.	.	LowGQX	END=155106201	GT	./.
chr1	155106202	.	T	.	.	LowGQX	END=155106213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155106214	.	C	.	.	LowGQX	.	GT	./.
chr1	155106215	.	C	.	.	LowGQX	END=155106219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155106220	.	G	.	.	LowGQX	.	GT	./.
chr1	155106221	.	C	.	.	LowGQX	END=155106225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155106226	.	G	.	.	LowGQX	.	GT	./.
chr1	155106227	.	A	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	155106228	.	C	.	.	LowGQX	END=155106230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155106231	.	T	.	.	LowGQX	.	GT	./.
chr1	155106232	.	C	.	.	LowGQX	END=155106236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155106237	.	G	.	.	LowGQX	.	GT	./.
chr1	155106238	.	G	.	.	LowGQX	END=155106242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155106243	.	G	.	.	LowGQX	.	GT	./.
chr1	155106244	.	A	.	.	LowGQX	END=155106248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155106249	.	T	.	.	LowGQX	END=155106250	GT	./.
chr1	155106251	.	C	.	.	LowGQX	END=155106257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155106258	.	T	.	.	LowGQX	.	GT	./.
chr1	155106259	.	G	.	.	LowGQX	END=155106263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155106264	.	G	.	.	LowGQX	.	GT	./.
chr1	155106265	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155106266	.	T	.	.	LowGQX	END=155106267	GT	./.
chr1	155106268	.	G	.	.	LowGQX	END=155106274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155106275	.	C	.	.	LowGQX	.	GT	./.
chr1	155106276	.	T	.	.	LowGQX	END=155106281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155106429	.	A	.	.	LowGQX	END=155106433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155106434	.	A	.	.	LowGQX	END=155106545	GT	./.
chr1	155108102	.	A	.	.	LowGQX	END=155108201	GT	./.
chr1	155108378	.	T	.	.	LowGQX	END=155108477	GT	./.
chr1	155108764	.	C	.	.	LowGQX	END=155108773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155108774	.	G	.	.	LowGQX	.	GT	./.
chr1	155108775	.	C	.	.	LowGQX	END=155108824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155108825	.	T	.	.	LowGQX	END=155108863	GT	./.
chr1	155109302	.	A	.	.	LowGQX	END=155109429	GT	./.
chr1	155110035	.	A	.	.	LowGQX	END=155110036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155110037	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	155110038	.	G	.	.	LowGQX	END=155110145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155110146	.	T	.	.	LowGQX	.	GT	./.
chr1	155110147	.	C	.	.	LowGQX	END=155110158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155110159	.	C	.	.	LowGQX	.	GT	./.
chr1	155110160	.	T	.	.	LowGQX	END=155110178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155110179	.	T	.	.	LowGQX	END=155110200	GT	./.
chr1	155110453	.	A	.	.	LowGQX	END=155110576	GT	./.
chr1	155110654	.	A	.	.	LowGQX	END=155110759	GT	./.
chr1	155112387	.	T	.	.	PASS	END=155112391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	155112392	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	155112393	.	G	.	.	PASS	END=155112400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	155112401	.	G	.	.	PASS	END=155112408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	155112409	.	G	.	.	PASS	END=155112420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	155112421	.	G	.	.	PASS	END=155112426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	155112427	.	G	.	.	PASS	END=155112456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	155112457	.	C	.	.	PASS	END=155112481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:87:60
chr1	155112482	.	G	.	.	PASS	END=155112518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	155112519	.	G	.	.	PASS	END=155112539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	155112540	.	A	.	.	PASS	END=155112551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	155112552	.	G	.	.	PASS	END=155112689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	155112690	.	C	.	.	PASS	END=155112707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	155112708	.	T	.	.	PASS	END=155112779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	155112780	.	C	.	.	PASS	END=155112802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:78:60
chr1	155112803	.	G	.	.	PASS	END=155112828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	155112829	.	G	.	.	PASS	END=155112832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	155112833	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:66:60
chr1	155112834	.	C	.	.	PASS	END=155112839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr1	155112840	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:63:60
chr1	155112841	.	C	.	.	PASS	END=155112848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:96:60
chr1	155112849	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:57:60
chr1	155112850	.	C	.	.	PASS	END=155112857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	155141914	.	G	.	.	LowGQX	END=155142038	GT	./.
chr1	155142251	.	G	.	.	LowGQX	END=155142350	GT	./.
chr1	155145020	.	C	.	.	LowGQX	END=155145119	GT	./.
chr1	155145212	.	A	.	.	LowGQX	END=155145284	GT	./.
chr1	155145285	.	G	.	.	LowGQX	END=155145326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155145327	.	A	.	.	LowGQX	.	GT	./.
chr1	155145328	.	C	.	.	LowGQX	END=155145370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155145688	.	T	.	.	LowGQX	END=155145787	GT	./.
chr1	155145868	.	A	.	.	LowGQX	END=155145967	GT	./.
chr1	155146425	.	G	.	.	LowGQX	END=155146438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155146439	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	155146440	.	G	.	.	LowGQX	END=155146483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155146484	.	G	.	.	LowGQX	.	GT	./.
chr1	155146485	.	G	.	.	LowGQX	END=155146491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155146492	.	T	.	.	LowGQX	END=155146524	GT	./.
chr1	155146996	.	G	.	.	LowGQX	END=155147155	GT	./.
chr1	155147192	.	G	.	.	LowGQX	END=155147297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155147298	.	G	.	.	LowGQX	.	GT	./.
chr1	155147299	.	A	.	.	LowGQX	END=155147303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155147304	.	G	.	.	LowGQX	.	GT	./.
chr1	155147305	.	A	.	.	LowGQX	END=155147351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155147850	.	G	.	.	LowGQX	END=155148269	GT	./.
chr1	155148362	.	A	.	.	LowGQX	END=155148709	GT	./.
chr1	155149406	.	A	.	.	LowGQX	END=155149553	GT	./.
chr1	155149669	.	A	.	.	LowGQX	END=155149768	GT	./.
chr1	155150476	.	A	.	.	LowGQX	END=155150733	GT	./.
chr1	155150966	.	A	.	.	LowGQX	END=155151091	GT	./.
chr1	155151194	.	C	.	.	LowGQX	END=155151251	GT	./.
chr1	155151252	.	C	.	.	LowGQX	END=155151274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155151275	.	T	.	.	LowGQX	.	GT	./.
chr1	155151276	.	T	.	.	LowGQX	END=155151290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155151291	.	G	.	.	LowGQX	.	GT	./.
chr1	155151292	.	C	.	.	LowGQX	END=155151293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155151294	.	A	.	.	LowGQX	.	GT	./.
chr1	155151295	.	C	.	.	LowGQX	END=155151300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155151301	.	A	.	.	LowGQX	.	GT	./.
chr1	155151302	.	C	.	.	LowGQX	END=155151307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155151308	.	T	.	.	LowGQX	.	GT	./.
chr1	155151309	.	C	.	.	LowGQX	END=155151315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155151316	.	A	.	.	LowGQX	.	GT	./.
chr1	155151317	.	C	.	.	LowGQX	END=155151332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155151333	.	G	.	.	LowGQX	.	GT	./.
chr1	155151334	.	G	.	.	LowGQX	END=155151337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155151338	.	T	.	.	LowGQX	.	GT	./.
chr1	155151339	.	G	.	.	LowGQX	END=155151348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155151349	.	C	.	.	LowGQX	END=155151353	GT	./.
chr1	155152106	.	A	.	.	LowGQX	END=155152274	GT	./.
chr1	155152275	.	G	.	.	LowGQX	END=155152304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155152305	.	A	.	.	LowGQX	.	GT	./.
chr1	155152306	.	A	.	.	LowGQX	END=155152353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155152354	.	A	.	.	LowGQX	.	GT	./.
chr1	155152355	.	G	.	.	LowGQX	END=155152405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155152406	.	A	.	.	LowGQX	.	GT	./.
chr1	155152407	.	C	.	.	LowGQX	END=155152412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155152895	.	A	.	.	LowGQX	.	GT	./.
chr1	155152896	.	C	.	.	LowGQX	END=155152981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155152982	.	A	.	.	LowGQX	.	GT	./.
chr1	155152983	.	A	.	.	LowGQX	END=155152984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155152985	.	C	.	.	LowGQX	END=155152994	GT	./.
chr1	155154326	.	A	.	.	LowGQX	END=155154411	GT	./.
chr1	155154412	.	T	.	.	LowGQX	END=155154463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155154464	.	C	.	.	LowGQX	.	GT	./.
chr1	155154465	.	C	.	.	LowGQX	END=155154512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155154513	.	A	.	.	LowGQX	.	GT	./.
chr1	155154514	.	G	.	.	LowGQX	END=155154562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155154563	.	C	.	.	LowGQX	END=155154674	GT	./.
chr1	155156271	.	A	.	.	LowGQX	END=155156276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156277	.	G	.	.	LowGQX	.	GT	./.
chr1	155156278	.	A	.	.	LowGQX	END=155156281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156282	.	G	.	.	LowGQX	.	GT	./.
chr1	155156283	.	G	.	.	LowGQX	END=155156295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156296	.	A	.	.	LowGQX	END=155156419	GT	./.
chr1	155156420	.	C	.	.	LowGQX	END=155156425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156426	.	A	.	.	LowGQX	.	GT	./.
chr1	155156427	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156428	.	C	.	.	LowGQX	.	GT	./.
chr1	155156429	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156430	.	G	.	.	LowGQX	.	GT	./.
chr1	155156431	.	G	.	.	LowGQX	END=155156432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156433	.	T	.	.	LowGQX	.	GT	./.
chr1	155156434	.	G	.	.	LowGQX	END=155156436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156437	.	C	.	.	LowGQX	.	GT	./.
chr1	155156438	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156439	.	G	.	.	LowGQX	.	GT	./.
chr1	155156440	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156441	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	155156442	.	C	.	.	LowGQX	END=155156447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156448	.	C	.	.	LowGQX	.	GT	./.
chr1	155156449	.	C	.	.	LowGQX	END=155156451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156452	.	C	.	.	LowGQX	.	GT	./.
chr1	155156453	.	C	.	.	LowGQX	END=155156457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156458	.	T	.	.	LowGQX	END=155156460	GT	./.
chr1	155156461	.	G	.	.	LowGQX	END=155156465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156466	.	T	.	.	LowGQX	.	GT	./.
chr1	155156467	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156468	.	C	.	.	LowGQX	.	GT	./.
chr1	155156469	.	C	.	.	LowGQX	END=155156471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156472	.	G	.	.	LowGQX	END=155156473	GT	./.
chr1	155156474	.	C	.	.	LowGQX	END=155156477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156478	.	G	.	.	LowGQX	END=155156479	GT	./.
chr1	155156480	.	G	.	.	LowGQX	END=155156482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156483	.	G	.	.	LowGQX	END=155156485	GT	./.
chr1	155156486	.	C	.	.	LowGQX	END=155156492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156493	.	T	.	.	LowGQX	END=155156494	GT	./.
chr1	155156495	.	C	.	.	LowGQX	END=155156496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156497	.	T	.	.	LowGQX	.	GT	./.
chr1	155156498	.	C	.	.	LowGQX	END=155156501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156502	.	G	.	.	LowGQX	END=155156503	GT	./.
chr1	155156504	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156505	.	G	.	.	LowGQX	END=155156506	GT	./.
chr1	155156507	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156508	.	G	.	.	LowGQX	.	GT	./.
chr1	155156509	.	T	.	.	LowGQX	END=155156515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156516	.	C	.	.	LowGQX	END=155156517	GT	./.
chr1	155156518	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156519	.	T	.	.	LowGQX	.	GT	./.
chr1	155156520	.	G	.	.	LowGQX	END=155156521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156522	.	G	.	.	LowGQX	.	GT	./.
chr1	155156523	.	C	.	.	LowGQX	END=155156525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156526	.	T	.	.	LowGQX	.	GT	./.
chr1	155156527	.	T	.	.	LowGQX	END=155156529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156530	.	A	.	.	LowGQX	.	GT	./.
chr1	155156531	.	G	.	.	LowGQX	END=155156535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156536	.	C	.	.	LowGQX	.	GT	./.
chr1	155156537	.	C	.	.	LowGQX	END=155156541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156542	.	A	.	.	LowGQX	.	GT	./.
chr1	155156543	.	C	.	.	LowGQX	END=155156548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156549	.	A	.	.	LowGQX	END=155156554	GT	./.
chr1	155156555	.	T	.	.	LowGQX	END=155156557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156558	.	G	.	.	LowGQX	END=155156560	GT	./.
chr1	155156561	.	C	.	.	LowGQX	END=155156562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156563	.	C	.	.	LowGQX	END=155156564	GT	./.
chr1	155156565	.	G	.	.	LowGQX	END=155156566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156567	.	C	.	.	LowGQX	.	GT	./.
chr1	155156568	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156569	.	T	.	.	LowGQX	.	GT	./.
chr1	155156570	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155156571	.	T	.	.	LowGQX	END=155156668	GT	./.
chr1	155158349	.	C	.	.	LowGQX	END=155158351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	155158352	.	T	.	.	LowGQX	END=155158363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	155158364	.	C	.	.	LowGQX	END=155158368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	155158369	.	C	.	.	LowGQX	END=155158376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	155158377	.	C	.	.	LowGQX	END=155158386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	155158387	.	C	.	.	LowGQX	END=155158388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	155158389	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr1	155158390	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	155158391	.	C	.	.	LowGQX	END=155158395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	155158396	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	155158397	.	C	.	.	LowGQX	END=155158400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	155158401	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	155158402	.	C	.	.	LowGQX	END=155158412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	155158413	.	G	.	.	LowGQX	END=155158414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr1	155158415	.	C	.	.	PASS	END=155158418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	155158419	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	155158420	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	155158421	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	155158422	.	G	.	.	PASS	END=155158425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	155158426	.	C	.	.	PASS	END=155158433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	155158434	.	C	.	.	PASS	END=155158441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	155158442	.	C	.	.	PASS	END=155158472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	155158473	.	C	.	.	PASS	END=155158481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr1	155158482	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:44:60
chr1	155158483	.	G	.	.	PASS	END=155158497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:87:60
chr1	155158498	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:69:60
chr1	155158499	.	C	.	.	PASS	END=155158506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	155158507	.	C	.	.	PASS	END=155158536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	155158537	.	G	.	.	PASS	END=155158567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	155158568	.	G	.	.	PASS	END=155158604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	155158605	.	G	.	.	PASS	END=155158686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	155158687	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:89:99:60
chr1	155159215	.	T	.	.	LowGQX	END=155159387	GT	./.
chr1	155159699	.	A	.	.	PASS	END=155159703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	155159704	.	C	.	.	PASS	END=155159707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	155159708	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:33:60
chr1	155159709	.	A	.	.	PASS	END=155159717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	155159718	.	G	.	.	PASS	END=155159730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	155159731	.	A	.	.	PASS	END=155159742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	155159743	.	G	.	.	PASS	END=155159756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	155159757	.	G	.	.	PASS	END=155159772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	155159773	.	G	.	.	PASS	END=155159852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	155159929	.	A	.	.	PASS	END=155159972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	155159973	.	G	.	.	PASS	END=155160054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	155160196	.	A	.	.	PASS	END=155160262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	155160263	.	G	.	.	PASS	END=155160316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	155160317	.	A	.	.	PASS	END=155160336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	155160462	.	G	.	.	PASS	END=155160470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	155160471	.	C	.	.	PASS	END=155160561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	155160637	.	A	.	.	PASS	END=155160668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	155160669	.	G	.	.	PASS	END=155160750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	155160751	.	C	.	.	PASS	END=155160803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	155160804	.	C	.	.	PASS	END=155160815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	155160816	.	A	.	.	PASS	END=155160833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	155160834	.	C	.	.	PASS	END=155160863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	155160864	.	A	.	.	PASS	END=155160876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	155160877	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:69:60
chr1	155160878	.	G	.	.	PASS	END=155160898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	155160899	.	T	.	.	PASS	END=155160911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	155160912	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:51:60
chr1	155160913	.	G	.	.	PASS	END=155160916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	155160917	.	T	.	.	PASS	END=155160927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	155160928	.	C	.	.	PASS	END=155160937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	155160938	.	T	.	.	PASS	END=155160953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	155160954	.	A	.	.	PASS	END=155160961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	155160962	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	155160963	.	T	.	.	LowGQX	END=155160974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	155160975	.	A	.	.	LowGQX	END=155160980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	155160981	.	T	.	.	LowGQX	END=155160982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	155160983	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	155160984	.	G	.	.	LowGQX	END=155160986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	155160987	.	C	.	.	LowGQX	END=155161004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155161005	.	T	.	.	LowGQX	.	GT	./.
chr1	155161006	.	G	.	.	LowGQX	END=155161015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	155161016	.	T	.	.	LowGQX	.	GT	./.
chr1	155161017	.	G	.	.	LowGQX	END=155161028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:50
chr1	155161029	.	G	.	.	LowGQX	END=155161033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:44
chr1	155161034	.	T	.	.	LowGQX	.	GT	./.
chr1	155161035	.	G	.	.	LowGQX	END=155161038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:44
chr1	155161039	.	T	.	33	LowGQX	DP=2;MQ=44;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:44:3
chr1	155161040	.	C	.	.	LowGQX	END=155161046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:44
chr1	155161047	.	C	.	.	LowGQX;LowMQ	END=155161111	GT	./.
chr1	155161112	.	T	.	.	LowGQX	END=155161167	GT	./.
chr1	155161168	.	C	.	.	LowGQX;LowMQ	END=155161428	GT	./.
chr1	155161466	.	C	.	.	LowGQX;LowMQ	END=155161565	GT	./.
chr1	155161656	.	G	.	.	LowGQX	END=155161662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:52
chr1	155161663	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:54
chr1	155161664	.	C	.	.	LowGQX	END=155161668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:54
chr1	155161669	.	G	.	.	LowGQX	END=155161670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:55
chr1	155161671	.	T	.	.	LowGQX	END=155161672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:55
chr1	155161673	.	G	.	.	LowGQX	END=155161675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:55
chr1	155161676	.	G	.	.	PASS	END=155161690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:56
chr1	155161691	.	G	.	.	PASS	END=155161694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:57
chr1	155161695	.	C	.	57.08	LowGQX	DP=14;MQ=57;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:11:14:27.08:57:27
chr1	155161696	.	G	.	.	PASS	END=155161698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:57
chr1	155161699	.	C	.	.	PASS	END=155161700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:57
chr1	155161701	.	G	.	.	PASS	END=155161706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:57
chr1	155161707	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:57
chr1	155161708	.	G	.	.	PASS	END=155161714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:57
chr1	155161715	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:58
chr1	155161716	.	G	.	.	PASS	END=155161719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:58
chr1	155161720	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:58
chr1	155161721	.	C	.	.	PASS	END=155161722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:58
chr1	155161723	.	C	.	57.07	LowGQX	DP=20;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:14:20:27.07:58:27
chr1	155161724	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:60:58
chr1	155161725	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:42:58
chr1	155161726	.	T	.	.	PASS	END=155161727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:60:58
chr1	155161728	.	G	.	.	PASS	END=155161730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:58
chr1	155161731	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:30:58
chr1	155161732	.	G	.	.	PASS	END=155161736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:58
chr1	155161737	.	G	.	.	PASS	END=155161738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:60:58
chr1	155161739	.	C	.	.	PASS	END=155161740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:58
chr1	155161741	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:63:58
chr1	155161742	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:39:58
chr1	155161743	.	G	.	.	PASS	END=155161744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:58
chr1	155161745	.	A	.	.	PASS	END=155161746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:59
chr1	155161747	.	C	.	.	PASS	END=155161748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:59
chr1	155161749	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:59
chr1	155161750	.	G	.	.	PASS	END=155161757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:59
chr1	155161758	.	C	.	.	PASS	END=155161760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:60
chr1	155161761	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:54:60
chr1	155161762	.	T	.	60.09	PASS	DP=21;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:15:21:30.10:60:30
chr1	155161763	.	T	.	.	PASS	END=155161764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	155161765	.	T	.	.	PASS	END=155161766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	155161767	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:27:60
chr1	155161768	.	G	.	.	PASS	END=155161772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	155161773	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:24:60
chr1	155161774	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:51:60
chr1	155161775	.	A	.	69.12	PASS	DP=22;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:16:22:39.13:60:39
chr1	155161776	.	G	.	.	PASS	END=155161778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	155161779	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:72:60
chr1	155161780	.	A	.	.	PASS	END=155161781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	155161782	.	A	.	.	PASS	END=155161784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	155161785	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:54:60
chr1	155161786	.	T	.	.	PASS	END=155161787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	155161788	.	G	.	.	PASS	END=155161790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	155161791	.	T	.	69.12	PASS	DP=26;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:20:26:39.12:60:39
chr1	155161792	.	G	.	.	PASS	END=155161793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	155161794	.	C	T	238.74	SB	BaseQRankSum=0.615;DP=27;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=10.4665;MQ=60;MQ0=0;MQRankSum=-0.359;QD=8.84;ReadPosRankSum=-0.821;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,13:27:99:269,0,264:60:99:0.500
chr1	155161795	.	G	.	.	PASS	END=155161800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	155161801	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:90:60
chr1	155161802	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:66:60
chr1	155161803	.	G	.	.	PASS	END=155161805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	155161806	.	G	.	.	PASS	END=155161808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	155161809	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:46:60
chr1	155161810	.	A	.	.	PASS	END=155161823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	155161824	.	G	.	.	PASS	END=155161846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	155161847	.	G	.	.	PASS	END=155161888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	155161889	.	G	.	.	PASS	END=155161906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	155161907	.	G	.	.	PASS	END=155161941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	155161942	.	T	.	.	PASS	END=155162052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	155162053	.	G	.	.	PASS	END=155162092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	155162093	.	C	.	.	PASS	END=155162132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	155162133	.	T	.	.	PASS	END=155162163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	155162164	.	A	.	.	PASS	END=155162208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	155162209	.	A	.	.	PASS	END=155162225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	155162226	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:99:60
chr1	155162227	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:66:60
chr1	155162228	.	C	.	.	PASS	END=155162235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	155162236	.	T	.	.	PASS	END=155162238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	155162239	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:51:60
chr1	155162240	.	C	.	.	PASS	END=155162243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	155162244	.	T	.	.	PASS	END=155162250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	155162251	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:27:60
chr1	155162252	.	T	.	.	PASS	END=155162257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	155162258	.	A	.	.	PASS	END=155162259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	155162260	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:24:60
chr1	155162261	.	C	.	.	PASS	END=155162275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	155162276	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:26:60
chr1	155162277	.	A	.	.	PASS	END=155162278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	155162556	.	T	.	.	PASS	END=155162558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	155162559	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:36:60
chr1	155162560	.	C	.	.	PASS	END=155162570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	155162571	.	C	.	.	PASS	END=155162577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	155162578	.	T	.	.	PASS	END=155162615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	155162616	.	A	.	.	PASS	END=155162655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	155165612	.	T	.	.	LowGQX	END=155165656	GT	./.
chr1	155165657	.	C	.	.	LowGQX	END=155165694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155165695	.	A	.	.	LowGQX	.	GT	./.
chr1	155165696	.	G	.	.	LowGQX	END=155165708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155165709	.	G	.	.	LowGQX	.	GT	./.
chr1	155165710	.	T	.	.	LowGQX	END=155165711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155165776	.	A	.	.	LowGQX	.	GT	./.
chr1	155165777	.	C	.	.	LowGQX	END=155165778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155165779	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	155165780	.	T	.	.	LowGQX	END=155165786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155165787	.	G	.	.	LowGQX	END=155165788	GT	./.
chr1	155165789	.	T	.	.	LowGQX	END=155165793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155165794	.	G	.	.	LowGQX	.	GT	./.
chr1	155165795	.	A	.	.	LowGQX	END=155165796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155165797	.	A	.	.	LowGQX	END=155165919	GT	./.
chr1	155166830	.	A	.	.	LowGQX	END=155166991	GT	./.
chr1	155166992	.	C	.	.	LowGQX	END=155167005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155167006	.	T	.	.	LowGQX	.	GT	./.
chr1	155167252	.	A	.	.	LowGQX	END=155167272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155167273	.	T	.	.	LowGQX	.	GT	./.
chr1	155167274	.	G	.	.	LowGQX	END=155167316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155167317	.	G	.	.	LowGQX	END=155167452	GT	./.
chr1	155167646	.	A	.	.	LowGQX	END=155167745	GT	./.
chr1	155167831	.	A	.	.	LowGQX	END=155167983	GT	./.
chr1	155167984	.	T	.	.	LowGQX	END=155168013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155168198	.	A	.	.	LowGQX	END=155168395	GT	./.
chr1	155169572	.	G	.	.	LowGQX	END=155169671	GT	./.
chr1	155169784	.	A	.	.	LowGQX	END=155169906	GT	./.
chr1	155170240	.	A	.	.	LowGQX	END=155170275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	155170276	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	155170277	.	T	.	.	LowGQX	END=155170291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	155170292	.	G	.	.	LowGQX	END=155170293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	155170294	.	G	.	.	LowGQX	END=155170299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	155170300	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	155170301	.	T	.	.	LowGQX	END=155170316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	155170317	.	C	A	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.05;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.29:30,0,66:60:3:0.333
chr1	155170318	.	G	.	.	LowGQX	END=155170341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	155170342	.	A	.	.	LowGQX	END=155170364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155170365	.	T	.	.	LowGQX	.	GT	./.
chr1	155170366	.	C	.	.	LowGQX	END=155170384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155170385	.	A	.	.	LowGQX	END=155170403	GT	./.
chr1	155170686	.	A	.	.	LowGQX	END=155170797	GT	./.
chr1	155170883	.	A	.	.	LowGQX	END=155170997	GT	./.
chr1	155171206	.	A	.	.	LowGQX	END=155171217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155171218	.	A	.	.	LowGQX	END=155171388	GT	./.
chr1	155171737	.	A	.	.	LowGQX	END=155171758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155171759	.	T	.	.	LowGQX	END=155171836	GT	./.
chr1	155172050	.	A	.	.	LowGQX	END=155172058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155172059	.	C	.	.	LowGQX	.	GT	./.
chr1	155172060	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155172061	.	G	.	.	LowGQX	END=155172062	GT	./.
chr1	155172063	.	C	.	.	LowGQX	END=155172072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155172073	.	G	.	.	LowGQX	.	GT	./.
chr1	155172074	.	T	.	.	LowGQX	END=155172119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155172120	.	A	.	.	LowGQX	END=155172194	GT	./.
chr1	155172601	.	A	.	.	LowGQX	END=155172753	GT	./.
chr1	155172853	.	A	.	.	LowGQX	END=155172952	GT	./.
chr1	155173006	.	A	.	.	LowGQX	END=155173105	GT	./.
chr1	155173268	.	C	.	.	LowGQX	END=155173367	GT	./.
chr1	155174590	.	T	.	.	LowGQX	END=155174750	GT	./.
chr1	155174849	.	A	.	.	LowGQX	END=155175109	GT	./.
chr1	155175989	.	A	.	.	LowGQX	END=155175995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155175996	.	T	.	.	LowGQX	.	GT	./.
chr1	155175997	.	T	.	.	LowGQX	END=155176002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155176003	.	T	.	.	LowGQX	END=155176004	GT	./.
chr1	155176005	.	C	.	.	LowGQX	END=155176010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155176011	.	A	.	.	LowGQX	.	GT	./.
chr1	155176012	.	C	.	.	LowGQX	END=155176015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155176016	.	G	.	.	LowGQX	.	GT	./.
chr1	155176017	.	G	.	.	LowGQX	END=155176028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155176029	.	C	.	.	LowGQX	.	GT	./.
chr1	155176030	.	G	.	.	LowGQX	END=155176033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155176034	.	G	.	.	LowGQX	.	GT	./.
chr1	155176035	.	T	.	.	LowGQX	END=155176040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155176041	.	T	.	.	LowGQX	END=155176199	GT	./.
chr1	155177579	.	A	.	.	LowGQX	END=155177585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155177586	.	T	.	.	LowGQX	END=155177678	GT	./.
chr1	155178594	.	A	.	.	LowGQX	END=155179125	GT	./.
chr1	155180131	.	C	.	.	LowGQX	END=155180230	GT	./.
chr1	155180329	.	T	.	.	LowGQX	END=155180428	GT	./.
chr1	155181915	.	C	.	.	LowGQX	END=155182014	GT	./.
chr1	155182174	.	A	.	.	LowGQX	END=155182360	GT	./.
chr1	155182474	.	C	.	.	LowGQX	END=155182573	GT	./.
chr1	155182995	.	C	.	.	LowGQX	END=155183087	GT	./.
chr1	155183088	.	G	.	.	LowGQX;LowMQ	END=155183169	GT	./.
chr1	155183170	.	C	.	.	LowGQX	END=155183184	GT	./.
chr1	155183202	.	G	.	.	LowGQX	END=155183491	GT	./.
chr1	155184159	.	T	.	.	PASS	END=155184167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:45:37
chr1	155184168	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:27:37
chr1	155184169	.	C	.	.	PASS	END=155184176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:48:37
chr1	155184177	.	G	.	.	PASS	END=155184196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:54:32
chr1	155184197	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:24:32
chr1	155184198	.	A	.	.	PASS	END=155184222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:51:32
chr1	155184223	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:32
chr1	155184224	.	C	.	.	PASS	END=155184230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:51:32
chr1	155184231	.	A	.	.	PASS	END=155184233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:42:33
chr1	155184234	.	C	.	.	PASS	END=155184245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:34
chr1	155184246	.	A	.	.	PASS	END=155184252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:36
chr1	155184253	.	T	.	.	PASS	END=155184264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:40
chr1	155184359	.	C	.	.	PASS	END=155184396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:59
chr1	155184397	.	C	.	.	PASS	END=155184457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:58
chr1	155184458	.	C	.	.	PASS	END=155184475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:80:57
chr1	155184845	.	C	.	.	PASS	END=155184875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:56
chr1	155184876	.	G	.	.	PASS	END=155184942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:58
chr1	155184943	.	T	.	.	PASS	END=155184951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	155184952	.	T	.	.	PASS	END=155184953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:60
chr1	155185354	.	T	.	.	PASS	END=155185373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	155185374	.	A	.	.	PASS	END=155185395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	155185396	.	G	.	.	PASS	END=155185420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	155185421	.	A	.	.	PASS	END=155185531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr1	155185532	.	A	.	.	PASS	END=155185549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	155185550	.	T	.	.	PASS	END=155185567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	155185568	.	T	.	.	PASS	END=155185578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	155186175	.	C	.	.	LowGQX	END=155186187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:59
chr1	155186188	.	T	.	.	LowGQX	END=155186196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:59
chr1	155186197	.	A	.	.	PASS	END=155186214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:59
chr1	155186215	.	A	.	.	PASS	END=155186229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:59
chr1	155186230	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:15:59
chr1	155186231	.	C	.	.	PASS	END=155186252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:58
chr1	155186253	.	A	.	.	PASS	END=155186261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:50
chr1	155186262	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:63:49
chr1	155186263	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:36:49
chr1	155186264	.	C	.	.	PASS	END=155186270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:49
chr1	155186271	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:38:49
chr1	155186272	.	C	.	.	PASS	END=155186294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:45
chr1	155186295	.	T	.	.	PASS	END=155186327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:60:44
chr1	155186328	.	T	.	.	PASS	END=155186365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:69:45
chr1	155186366	.	T	.	.	PASS	END=155186383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:60:43
chr1	155186384	.	A	.	.	PASS	END=155186386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:57:43
chr1	155186387	.	T	.	.	PASS	END=155186404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:60:43
chr1	155186405	.	C	.	.	PASS	END=155186407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:51:47
chr1	155186408	.	G	.	.	PASS	END=155186412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:48
chr1	155186648	.	T	.	.	PASS	END=155186656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	155186657	.	T	.	.	PASS	END=155186676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	155186677	.	G	.	.	PASS	END=155186683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	155186684	.	T	.	.	PASS	END=155186691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	155186692	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:58:60
chr1	155186693	.	T	.	.	PASS	END=155186708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	155186709	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:69:60
chr1	155186710	.	C	.	.	PASS	END=155186742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:57
chr1	155186743	.	A	.	.	PASS	END=155186808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:45
chr1	155186809	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:73:72:44
chr1	155186810	.	A	.	.	PASS	END=155186820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:42
chr1	155187031	.	C	.	.	PASS	END=155187099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:275:99:23
chr1	155187100	.	G	.	.	PASS	END=155187113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:30
chr1	155187114	.	T	.	.	PASS	END=155187133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:33
chr1	155187134	.	A	.	.	PASS	END=155187164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:35
chr1	155187748	.	T	.	.	PASS	END=155187759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	155187760	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:60
chr1	155187761	.	C	.	.	PASS	END=155187770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	155187771	.	A	.	.	PASS	END=155187785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	155187786	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:27:60
chr1	155187787	.	T	.	.	PASS	END=155187798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	155187799	.	T	.	.	PASS	END=155187838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	155187839	.	A	.	.	PASS	END=155187842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:66:60
chr1	155187843	.	A	.	.	PASS	END=155187845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	155187846	.	G	.	.	PASS	END=155187847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	155188175	.	T	.	.	PASS	END=155188194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:56
chr1	155188195	.	A	.	.	PASS	END=155188274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:58
chr1	155188603	.	A	.	.	PASS	END=155188688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:52
chr1	155188689	.	A	.	.	PASS	END=155188702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	155194619	.	T	.	.	LowGQX	END=155194718	GT	./.
chr1	155203757	.	C	.	.	LowGQX;LowMQ	END=155203856	GT	./.
chr1	155203902	.	C	.	.	LowGQX;LowMQ	END=155204051	GT	./.
chr1	155204052	.	C	.	.	LowGQX	END=155204078	GT	./.
chr1	155204079	.	G	.	.	LowGQX;LowMQ	END=155204216	GT	./.
chr1	155204217	.	C	.	.	LowGQX	END=155204240	GT	./.
chr1	155204735	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:42
chr1	155204736	.	T	.	.	PASS	END=155204737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:40
chr1	155204738	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:40
chr1	155204739	.	C	.	.	PASS	END=155204742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:39
chr1	155204743	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:37
chr1	155204744	.	A	.	.	PASS	END=155204746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:37
chr1	155204747	.	C	.	.	LowGQX	END=155204748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:27:37
chr1	155204749	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:37
chr1	155204750	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:37
chr1	155204751	.	G	.	.	PASS	END=155204752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:37
chr1	155204753	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:37
chr1	155204754	.	T	.	.	PASS	END=155204755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:37
chr1	155204756	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:18:37
chr1	155204757	.	G	.	.	PASS	END=155204792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:35
chr1	155204793	.	C	.	.	LowGQX	END=155204794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:27:29
chr1	155204795	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:15:29
chr1	155204796	.	C	.	.	PASS	END=155204799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:33:30
chr1	155204800	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:27:30
chr1	155204801	.	C	.	.	PASS	END=155204807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:30:30
chr1	155204808	.	G	.	.	PASS	END=155204816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:36:29
chr1	155204817	.	G	.	.	PASS	END=155204829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:42:31
chr1	155204830	.	A	.	.	PASS	END=155204845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:48:31
chr1	155204846	.	G	.	.	PASS	END=155204849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:32
chr1	155204850	.	A	.	.	PASS	END=155204852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:48:32
chr1	155204853	.	G	.	.	PASS	END=155204864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:32
chr1	155204865	.	A	.	.	PASS	END=155204867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:33
chr1	155204868	.	G	.	.	PASS	END=155204879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:36
chr1	155204880	.	T	.	.	PASS	END=155204897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:42
chr1	155204898	.	A	.	.	PASS	END=155204934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:48
chr1	155204935	.	G	.	.	PASS	END=155204969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:54
chr1	155204970	.	T	.	.	PASS	END=155205004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:58
chr1	155205005	.	C	.	.	PASS	END=155205086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:57
chr1	155205087	.	C	.	.	PASS	END=155205115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:56
chr1	155205116	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:54:56
chr1	155205117	.	A	.	.	PASS	END=155205129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:90:56
chr1	155205130	.	C	.	.	PASS	END=155205131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:75:56
chr1	155205132	.	C	.	.	PASS	END=155205152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:55
chr1	155205153	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:99:55
chr1	155205421	.	G	.	.	PASS	END=155205437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:51
chr1	155205438	.	T	.	.	PASS	END=155205458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:54
chr1	155205459	.	G	.	.	PASS	END=155205481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:55
chr1	155205482	.	C	.	.	PASS	END=155205513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:57
chr1	155205514	.	G	.	.	PASS	END=155205595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:58
chr1	155205596	.	G	.	.	PASS	END=155205632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:58
chr1	155205633	.	G	.	.	PASS	END=155205653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:57
chr1	155205654	.	C	.	.	PASS	END=155205668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:57
chr1	155205669	.	G	T	1641.06	PASS	BaseQRankSum=1.417;DP=55;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=57;MQ0=0;MQRankSum=1.543;QD=29.84;ReadPosRankSum=-0.661;SB=-404.20	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,54:55:99:1674,129,0:57:99:0.982
chr1	155205670	.	C	.	.	PASS	END=155205685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:56
chr1	155205686	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:99:56
chr1	155205985	.	A	.	.	PASS	END=155206001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	155206002	.	C	.	.	PASS	END=155206038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	155206039	.	G	.	.	PASS	END=155206055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	155206056	.	A	.	.	PASS	END=155206071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	155206072	.	C	.	.	PASS	END=155206108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	155206109	.	G	.	.	PASS	END=155206213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr1	155206214	.	A	.	.	PASS	END=155206230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	155206231	.	A	.	.	PASS	END=155206250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	155206251	.	C	.	.	PASS	END=155206289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	155206290	.	C	.	.	PASS	END=155206304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	155206305	.	C	.	.	PASS	END=155206311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	155207081	.	T	.	.	LowGQX	END=155207097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	155207098	.	G	.	.	LowGQX	END=155207100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	155207101	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	155207102	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	155207103	.	C	.	.	LowGQX	END=155207110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	155207111	.	C	.	.	LowGQX	END=155207118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	155207119	.	G	.	.	LowGQX	END=155207124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	155207125	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	155207126	.	C	.	.	LowGQX	END=155207127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	155207128	.	T	.	.	PASS	END=155207131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	155207132	.	C	.	.	LowGQX	END=155207133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	155207134	.	C	.	.	PASS	END=155207146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	155207147	.	G	.	.	PASS	END=155207167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	155207168	.	A	.	.	PASS	END=155207190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:59
chr1	155207191	.	T	.	.	PASS	END=155207201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:59
chr1	155207202	.	C	.	.	PASS	END=155207217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:57
chr1	155207218	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:81:53
chr1	155207219	.	A	.	.	PASS	END=155207222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:60:53
chr1	155207223	.	A	.	.	PASS	END=155207281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:63:48
chr1	155207282	.	G	.	.	PASS	END=155207290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:69:50
chr1	155207291	.	C	.	.	PASS	END=155207292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:39:50
chr1	155207293	.	A	.	.	PASS	END=155207347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:48
chr1	155207348	.	C	.	.	PASS	END=155207361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:49
chr1	155207362	.	C	.	.	PASS	END=155207371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:50
chr1	155207372	.	G	.	.	PASS	END=155207384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:53
chr1	155207385	.	T	.	.	PASS	END=155207387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:54
chr1	155207388	.	T	.	.	PASS	END=155207408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:54
chr1	155207409	.	T	.	.	PASS	END=155207420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:58
chr1	155207874	.	A	.	.	PASS	END=155207887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	155207888	.	G	.	.	PASS	END=155207895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	155207896	.	C	.	.	PASS	END=155207898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	155207899	.	A	.	.	PASS	END=155207907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:63:60
chr1	155207908	.	C	.	.	PASS	END=155207917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	155207918	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:60:60
chr1	155207919	.	C	.	.	PASS	END=155207927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	155207928	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:68:60
chr1	155207929	.	C	.	.	PASS	END=155207936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	155207937	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:46:60
chr1	155207938	.	T	.	.	PASS	END=155207953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	155207954	.	G	.	.	PASS	END=155207982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	155207983	.	A	.	.	PASS	END=155208092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:48
chr1	155208093	.	G	.	.	PASS	END=155208140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:37
chr1	155208141	.	C	.	.	PASS	END=155208148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:34
chr1	155208235	.	G	.	.	PASS	END=155208242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:26
chr1	155208243	.	A	.	.	PASS	END=155208378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:272:99:23
chr1	155208379	.	T	.	.	PASS	END=155208386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:30
chr1	155208387	.	C	.	.	PASS	END=155208409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:34
chr1	155208410	.	C	.	.	PASS	END=155208435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:37
chr1	155208436	.	C	.	.	PASS	END=155208469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:39
chr1	155208470	.	A	.	.	PASS	END=155208492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:38
chr1	155209356	.	A	.	.	PASS	END=155209379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	155209380	.	A	.	.	PASS	END=155209392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	155209393	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:72:69:60
chr1	155209394	.	C	.	.	PASS	END=155209409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	155209410	.	C	.	.	PASS	END=155209524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	155209525	.	C	.	.	PASS	END=155209579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	155209580	.	T	.	.	PASS	END=155209604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	155209626	.	A	.	.	PASS	END=155209659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	155209660	.	A	.	.	PASS	END=155209688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	155209689	.	G	.	.	PASS	END=155209827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	155209828	.	C	.	.	PASS	END=155209858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	155209859	.	G	.	.	PASS	END=155209883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	155209884	.	T	.	.	PASS	END=155209917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	155209918	.	A	.	.	PASS	END=155209919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	155210370	.	G	.	.	PASS	END=155210388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:54
chr1	155210389	.	G	.	.	PASS	END=155210412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:55
chr1	155210413	.	T	.	.	PASS	END=155210442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:57
chr1	155210443	.	A	.	.	PASS	END=155210477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:58
chr1	155210478	.	T	.	.	PASS	END=155210534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:59
chr1	155210535	.	A	.	.	PASS	END=155210559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	155210826	.	C	.	.	PASS	END=155210863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:50
chr1	155210864	.	C	.	.	PASS	END=155210938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:54
chr1	155210939	.	G	.	.	PASS	END=155210960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	155217186	.	C	.	.	LowGQX	END=155217193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155217194	.	C	.	.	LowGQX	END=155217320	GT	./.
chr1	155217550	.	T	.	.	LowGQX	END=155217753	GT	./.
chr1	155217824	.	G	.	.	LowGQX	END=155217996	GT	./.
chr1	155217997	.	G	.	.	LowGQX	END=155218088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155218089	.	A	.	.	LowGQX	END=155218096	GT	./.
chr1	155218181	.	A	.	.	LowGQX	END=155218280	GT	./.
chr1	155220054	.	G	.	.	LowGQX	END=155220720	GT	./.
chr1	155220871	.	T	.	.	LowGQX	END=155220970	GT	./.
chr1	155221291	.	A	.	.	LowGQX	END=155221450	GT	./.
chr1	155221492	.	A	.	.	LowGQX	END=155221715	GT	./.
chr1	155223344	.	T	.	.	LowGQX	END=155223345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155223346	.	A	.	.	LowGQX	END=155223347	GT	./.
chr1	155223348	.	G	.	.	LowGQX	END=155223354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155223355	.	T	.	.	LowGQX	END=155223356	GT	./.
chr1	155223357	.	A	.	.	LowGQX	END=155223375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155223376	.	C	.	.	LowGQX	END=155223525	GT	./.
chr1	155223598	.	C	.	.	LowGQX	END=155223771	GT	./.
chr1	155223873	.	A	.	.	LowGQX	END=155223984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155223985	.	T	.	.	LowGQX	.	GT	./.
chr1	155223986	.	C	.	.	LowGQX	END=155223987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155224170	.	G	.	.	LowGQX	END=155224269	GT	./.
chr1	155224442	.	A	.	.	LowGQX	END=155224559	GT	./.
chr1	155224560	.	G	.	.	LowGQX	END=155224670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155226062	.	G	.	.	LowGQX	END=155226103	GT	./.
chr1	155226104	.	G	.	.	LowGQX	END=155226212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155226463	.	A	.	.	LowGQX	END=155226584	GT	./.
chr1	155227074	.	A	.	.	LowGQX	END=155227086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155227087	.	A	.	.	LowGQX	.	GT	./.
chr1	155227088	.	C	.	.	LowGQX	END=155227103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155227104	.	C	.	.	LowGQX	.	GT	./.
chr1	155227105	.	C	.	.	LowGQX	END=155227122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155227123	.	A	.	.	LowGQX	.	GT	./.
chr1	155227124	.	T	.	.	LowGQX	END=155227130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155227131	.	C	.	.	LowGQX	.	GT	./.
chr1	155227132	.	G	.	.	LowGQX	END=155227156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155227157	.	A	.	.	LowGQX	END=155227158	GT	./.
chr1	155227159	.	A	.	.	LowGQX	END=155227161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155227162	.	G	.	.	LowGQX	.	GT	./.
chr1	155227163	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155227164	.	A	.	.	LowGQX	.	GT	./.
chr1	155227165	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155227166	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	155227167	.	A	.	.	LowGQX	END=155227168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155227169	.	C	.	.	LowGQX	END=155227170	GT	./.
chr1	155227171	.	G	.	.	LowGQX	END=155227176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155227177	.	C	.	.	LowGQX	.	GT	./.
chr1	155227178	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155227179	.	T	.	.	LowGQX	.	GT	./.
chr1	155227287	.	A	.	.	LowGQX	END=155227337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155227338	.	T	.	.	LowGQX	.	GT	./.
chr1	155227339	.	G	.	.	LowGQX	END=155227352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155227353	.	A	.	.	LowGQX	END=155227450	GT	./.
chr1	155228615	.	A	.	.	LowGQX	END=155228624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155228625	.	A	.	.	LowGQX	END=155228747	GT	./.
chr1	155230119	.	A	.	.	LowGQX	END=155230121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155230122	.	A	.	.	LowGQX	.	GT	./.
chr1	155230123	.	G	.	.	LowGQX	END=155230124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155230125	.	T	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	155230126	.	G	.	.	LowGQX	.	GT	./.
chr1	155230127	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155230128	.	G	.	.	LowGQX	.	GT	./.
chr1	155230129	.	C	.	.	LowGQX	END=155230134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155230135	.	A	.	.	LowGQX	END=155230136	GT	./.
chr1	155230137	.	G	.	.	LowGQX	END=155230139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155230140	.	A	.	.	LowGQX	END=155230243	GT	./.
chr1	155230276	.	G	.	.	LowGQX	END=155230452	GT	./.
chr1	155231437	.	C	.	.	LowGQX	END=155231494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155231495	.	G	.	.	LowGQX	.	GT	./.
chr1	155231496	.	G	.	.	LowGQX	END=155231503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155231504	.	G	.	.	LowGQX	.	GT	./.
chr1	155231505	.	G	.	.	LowGQX	END=155231512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155231513	.	T	.	.	LowGQX	.	GT	./.
chr1	155231514	.	C	.	.	LowGQX	END=155231519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155231520	.	T	.	.	LowGQX	.	GT	./.
chr1	155231521	.	G	.	.	LowGQX	END=155231536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155231860	.	C	.	.	LowGQX	END=155231959	GT	./.
chr1	155233007	.	C	.	.	PASS	END=155233057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	155233058	.	G	.	.	PASS	END=155233155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	155233156	.	C	.	.	PASS	END=155233193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	155233737	.	T	.	.	PASS	END=155233758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	155233759	.	C	.	.	PASS	END=155233780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	155233781	.	G	.	.	PASS	END=155233836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	155234002	.	C	.	.	PASS	END=155234036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	155234037	.	G	.	.	PASS	END=155234101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	155234251	.	T	.	.	PASS	END=155234300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	155234301	.	G	.	.	PASS	END=155234350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	155234434	.	A	.	.	PASS	END=155234534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	155234535	.	C	.	.	PASS	END=155234549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	155234550	.	T	.	.	PASS	END=155234567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	155235649	.	A	.	.	PASS	END=155235660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:59
chr1	155235661	.	T	.	.	PASS	END=155235748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:59
chr1	155236518	.	A	.	.	PASS	END=155236537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	155236538	.	G	.	.	PASS	END=155236569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	155236570	.	G	.	.	PASS	END=155236679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	155236680	.	A	.	.	PASS	END=155236707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	155237799	.	A	.	.	PASS	END=155237883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	155237884	.	C	.	.	PASS	END=155237912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	155237913	.	C	.	.	PASS	END=155237919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	155238068	.	A	.	.	PASS	END=155238102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	155238103	.	G	.	.	PASS	END=155238167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	155238492	.	C	.	.	PASS	END=155238559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	155238560	.	A	.	.	PASS	END=155238564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	155238565	.	T	.	.	PASS	END=155238569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	155238570	.	C	.	.	PASS	END=155238586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	155238587	.	C	.	.	PASS	END=155238591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	155239277	.	A	.	.	PASS	END=155239326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	155239327	.	C	.	.	PASS	END=155239507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	155239508	.	C	.	.	PASS	END=155239509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	155240597	.	A	.	.	PASS	END=155240613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	155240614	.	T	.	.	PASS	END=155240727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	155240728	.	C	.	.	PASS	END=155240743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	155240744	.	A	.	.	PASS	END=155240758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	155240759	.	G	.	.	PASS	END=155240770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	155247380	.	C	.	.	LowGQX	END=155247427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155247428	.	C	.	.	LowGQX	END=155247435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	155247436	.	C	.	6.90	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.02:60:0
chr1	155247437	.	T	.	.	LowGQX	END=155247471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	155247472	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	155247473	.	C	.	.	LowGQX	END=155247489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	155247490	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	155247491	.	T	.	.	LowGQX	END=155247495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	155247496	.	A	.	.	LowGQX	END=155247499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	155247500	.	C	.	.	LowGQX	END=155247510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	155247511	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:60
chr1	155247512	.	C	.	.	LowGQX	END=155247515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	155247516	.	G	.	.	LowGQX	END=155247523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	155247524	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	155247525	.	C	.	.	LowGQX	END=155247526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	155247527	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	155247528	.	T	.	.	LowGQX	END=155247533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	155247534	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:60
chr1	155247535	.	C	.	.	LowGQX	END=155247543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	155247544	.	C	.	.	LowGQX	END=155247597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	155247598	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:1:60
chr1	155247599	.	T	.	.	LowGQX	END=155247601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	155247602	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:12:60
chr1	155247603	.	G	.	.	LowGQX	END=155247613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	155247614	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:12:60
chr1	155247615	.	G	.	.	LowGQX	END=155247630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	155247631	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:12:60
chr1	155247632	.	G	.	.	LowGQX	END=155247634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	155247635	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:12:60
chr1	155247636	.	C	.	.	LowGQX	END=155247655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	155247656	.	T	.	.	LowGQX	END=155247660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	155247661	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	155252200	.	A	.	.	LowGQX	END=155252522	GT	./.
chr1	155252523	.	C	.	.	LowGQX	END=155252554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155252555	.	G	.	.	LowGQX	.	GT	./.
chr1	155252556	.	C	.	.	LowGQX	END=155252589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155252590	.	C	.	.	LowGQX	.	GT	./.
chr1	155252591	.	G	.	.	LowGQX	END=155252602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155252603	.	T	.	.	LowGQX	.	GT	./.
chr1	155252604	.	C	.	.	LowGQX	END=155252618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155252619	.	C	.	.	LowGQX	.	GT	./.
chr1	155252620	.	C	.	.	LowGQX	END=155252633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155253763	.	A	.	.	LowGQX	END=155253773	GT	./.
chr1	155253774	.	A	.	.	LowGQX	END=155253777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155253778	.	C	.	.	LowGQX	END=155253787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	155253788	.	G	.	.	LowGQX	END=155253792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	155253793	.	G	.	.	LowGQX	END=155253807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	155253808	.	T	.	.	LowGQX	END=155253817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	155253818	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	155253819	.	A	.	.	LowGQX	END=155253835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	155253836	.	G	.	.	LowGQX	END=155253853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	155253854	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155253855	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	155253856	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155253857	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	155253858	.	C	.	.	PASS	END=155253862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155253863	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	155253864	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155253865	.	T	.	.	LowGQX	END=155253866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	155253867	.	C	.	.	PASS	END=155253870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155253871	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	155253872	.	G	.	.	PASS	END=155253875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155253876	.	A	.	.	LowGQX	END=155253877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:60
chr1	155253878	.	G	.	.	PASS	END=155253879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155253880	.	T	.	.	LowGQX	END=155253881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr1	155253882	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155253883	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	155253884	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155253885	.	G	.	.	LowGQX	END=155253909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	155253910	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:1:60
chr1	155253911	.	C	.	.	LowGQX	END=155253928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	155254328	.	A	.	.	PASS	END=155254354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	155254355	.	C	.	.	PASS	END=155254372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	155254373	.	C	.	.	PASS	END=155254413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	155254414	.	C	.	.	PASS	END=155254509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	155254510	.	C	.	.	PASS	END=155254538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	155254539	.	C	.	.	PASS	END=155254550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	155254954	.	A	.	.	PASS	END=155255036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	155255037	.	C	.	.	PASS	END=155255054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	155255055	.	T	.	.	PASS	END=155255056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:69:60
chr1	155255057	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:53:60
chr1	155255058	.	G	.	.	PASS	END=155255062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:63:60
chr1	155255063	.	G	.	.	PASS	END=155255070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	155255071	.	T	.	.	PASS	END=155255074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:66:60
chr1	155255075	.	G	.	.	PASS	END=155255078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	155255079	.	G	.	.	PASS	END=155255084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:63:60
chr1	155255085	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:45:60
chr1	155255086	.	G	.	.	PASS	END=155255088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	155255089	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:45:60
chr1	155255090	.	G	.	.	PASS	END=155255097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:66:60
chr1	155255098	.	G	.	.	PASS	END=155255104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	155255513	.	A	.	.	LowGQX	END=155255757	GT	./.
chr1	155256962	.	A	.	.	LowGQX	END=155257130	GT	./.
chr1	155257570	.	A	.	.	LowGQX	END=155257781	GT	./.
chr1	155257782	.	C	.	.	LowGQX	END=155257879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155257880	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	155257881	.	G	.	.	LowGQX	END=155257997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155257998	.	A	.	.	LowGQX	END=155258256	GT	./.
chr1	155260312	.	A	.	.	PASS	END=155260325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	155260326	.	T	.	.	PASS	END=155260351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	155260352	.	G	.	.	PASS	END=155260365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	155260366	.	G	.	.	PASS	END=155260387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	155260388	.	A	.	.	PASS	END=155260480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	155260481	.	A	.	.	PASS	END=155260512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	155260513	.	C	.	.	PASS	END=155260520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	155261496	.	G	.	.	PASS	END=155261527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	155261528	.	G	.	.	PASS	END=155261562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	155261563	.	T	.	.	PASS	END=155261661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	155261662	.	C	.	.	PASS	END=155261681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	155261682	.	C	.	.	PASS	END=155261719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	155261720	.	T	.	.	PASS	END=155261735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	155261736	.	A	.	.	PASS	END=155261745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	155261746	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:60
chr1	155261747	.	G	.	.	PASS	END=155261751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	155261752	.	C	.	.	PASS	END=155261753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:54:60
chr1	155261754	.	C	.	.	PASS	END=155261759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	155261760	.	A	.	.	PASS	END=155261769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	155261770	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:48:60
chr1	155261771	.	G	.	.	PASS	END=155261772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:63:60
chr1	155261773	.	T	.	.	PASS	END=155261774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	155261775	.	A	.	.	PASS	END=155261779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	155262917	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:66:60
chr1	155262918	.	C	.	.	PASS	END=155262920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	155262921	.	A	.	.	PASS	END=155262922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:32:60
chr1	155262923	.	C	.	.	PASS	END=155262927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	155262928	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:42:60
chr1	155262929	.	C	.	.	PASS	END=155262939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	155262940	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:75:60
chr1	155262941	.	T	.	.	PASS	END=155262959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:80:60
chr1	155262960	.	C	.	.	PASS	END=155262965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	155262966	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:68:63:60
chr1	155262967	.	C	.	.	PASS	END=155262983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	155262984	.	G	.	.	PASS	END=155263008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	155263009	.	C	.	.	PASS	END=155263070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	155263071	.	C	.	.	PASS	END=155263122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	155263123	.	C	.	.	PASS	END=155263151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	155263152	.	T	.	.	PASS	END=155263230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	155263231	.	C	.	.	PASS	END=155263296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	155263297	.	A	.	.	PASS	END=155263349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	155263350	.	G	.	.	PASS	END=155263390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	155263391	.	A	.	.	PASS	END=155263415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	155263416	.	T	.	.	PASS	END=155263426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	155263427	.	C	.	.	PASS	END=155263432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	155263975	.	A	.	.	PASS	END=155264000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	155264001	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:31:60
chr1	155264002	.	G	.	.	PASS	END=155264005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:66:60
chr1	155264006	.	C	.	.	PASS	END=155264017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	155264018	.	C	.	.	PASS	END=155264044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	155264045	.	G	.	.	PASS	END=155264168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	155264169	.	C	.	.	PASS	END=155264190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr1	155264191	.	G	.	.	PASS	END=155264209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	155264210	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:60:60
chr1	155264211	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:99:60
chr1	155264212	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:72:60
chr1	155264213	.	G	.	.	PASS	END=155264238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	155264239	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:66:60
chr1	155264240	.	C	.	.	PASS	END=155264266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	155264267	.	C	.	.	PASS	END=155264305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:87:60
chr1	155264306	.	A	.	.	PASS	END=155264331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	155264332	.	A	.	.	PASS	END=155264389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	155264390	.	A	.	.	PASS	END=155264456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	155264457	.	A	.	.	PASS	END=155264488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	155264489	.	T	.	.	PASS	END=155264533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	155264534	.	C	.	.	PASS	END=155264549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	155264550	.	A	.	.	PASS	END=155264562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	155264563	.	C	.	.	PASS	END=155264571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	155264572	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:57:60
chr1	155264573	.	C	.	.	PASS	END=155264578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	155264579	.	T	.	.	PASS	END=155264585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	155264586	.	G	.	.	PASS	END=155264594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	155264856	.	G	.	.	PASS	END=155264870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	155264871	.	G	.	.	PASS	END=155264944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	155264945	.	A	.	.	PASS	END=155264999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	155265000	.	A	.	.	PASS	END=155265014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	155265015	.	T	.	.	PASS	END=155265045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	155265046	.	C	.	.	PASS	END=155265074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	155265075	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:99:60
chr1	155265076	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:75:60
chr1	155265077	.	A	.	.	PASS	END=155265112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	155265113	.	A	.	.	PASS	END=155265144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	155265177	.	A	.	.	PASS	END=155265196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	155265197	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:75:60
chr1	155265198	.	G	.	.	PASS	END=155265202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	155265203	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:68:60
chr1	155265204	.	G	.	.	PASS	END=155265212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	155265213	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:69:60
chr1	155265214	.	G	.	.	PASS	END=155265266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	155265267	.	G	.	.	PASS	END=155265392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	155265393	.	A	.	.	PASS	END=155265446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	155265447	.	G	.	.	PASS	END=155265501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	155265502	.	G	.	.	PASS	END=155265597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	155265598	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:107:99:60
chr1	155269838	.	C	.	.	PASS	END=155269854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	155269855	.	C	.	.	PASS	END=155269869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	155269870	.	G	.	.	PASS	END=155269882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr1	155269883	.	G	.	.	PASS	END=155269935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	155269936	.	T	.	.	PASS	END=155269970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	155269971	.	G	.	.	PASS	END=155270024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	155270025	.	C	.	.	PASS	END=155270054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	155270055	.	C	.	.	PASS	END=155270085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	155270086	.	G	.	.	PASS	END=155270100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	155270101	.	T	.	.	PASS	END=155270107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	155270108	.	T	.	.	PASS	END=155270115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	155270116	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:36:60
chr1	155270117	.	T	.	.	PASS	END=155270122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	155270585	.	C	.	.	PASS	END=155270688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	155270689	.	A	.	.	PASS	END=155270715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	155270716	.	T	.	.	PASS	END=155270735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:79:60
chr1	155270736	.	T	.	.	PASS	END=155270744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	155270745	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:63:60
chr1	155270746	.	A	.	.	PASS	END=155270761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	155270762	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:54:60
chr1	155271036	.	T	.	.	PASS	END=155271071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:78:60
chr1	155271072	.	G	.	.	PASS	END=155271196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	155271197	.	T	.	.	PASS	END=155271216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	155271217	.	C	.	.	PASS	END=155271237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	155279579	.	G	.	.	LowGQX	END=155279758	GT	./.
chr1	155279832	.	A	.	.	LowGQX	END=155279976	GT	./.
chr1	155279977	.	C	.	.	LowGQX	END=155279998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155282044	.	A	.	.	LowGQX	END=155282070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155282071	.	G	.	.	LowGQX	.	GT	./.
chr1	155282072	.	C	.	.	LowGQX	END=155282075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155282076	.	T	.	.	LowGQX	.	GT	./.
chr1	155282077	.	A	.	.	LowGQX	END=155282079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155282080	.	A	.	.	LowGQX	END=155282081	GT	./.
chr1	155282082	.	C	.	.	LowGQX	END=155282087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155282088	.	T	.	.	LowGQX	.	GT	./.
chr1	155282089	.	T	.	.	LowGQX	END=155282090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155282091	.	A	.	.	LowGQX	.	GT	./.
chr1	155282092	.	C	.	.	LowGQX	END=155282100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155282101	.	T	.	.	LowGQX	.	GT	./.
chr1	155282102	.	A	.	.	LowGQX	END=155282115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155282116	.	T	.	.	LowGQX	.	GT	./.
chr1	155282117	.	G	.	.	LowGQX	END=155282146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155282147	.	T	.	.	LowGQX	.	GT	./.
chr1	155282148	.	C	.	.	LowGQX	END=155282151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155282152	.	A	.	.	LowGQX	.	GT	./.
chr1	155282153	.	G	.	.	LowGQX	END=155282171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155282172	.	T	.	.	LowGQX	.	GT	./.
chr1	155282173	.	G	.	.	LowGQX	END=155282178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155282179	.	T	.	.	LowGQX	.	GT	./.
chr1	155282180	.	G	.	.	LowGQX	END=155282184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155282185	.	T	.	.	LowGQX	END=155282188	GT	./.
chr1	155287723	.	T	.	.	LowGQX	END=155287822	GT	./.
chr1	155287958	.	A	.	.	LowGQX	END=155288084	GT	./.
chr1	155288394	.	G	.	.	LowGQX	END=155288421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155288422	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	155288423	.	G	.	.	LowGQX	END=155288475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155288476	.	T	.	.	LowGQX	.	GT	./.
chr1	155288477	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155288478	.	G	.	.	LowGQX	.	GT	./.
chr1	155288479	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155288480	.	C	.	.	LowGQX	.	GT	./.
chr1	155288481	.	A	.	.	LowGQX	END=155288484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155288485	.	C	.	.	LowGQX	.	GT	./.
chr1	155288486	.	C	.	.	LowGQX	END=155288504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155288505	.	C	.	.	LowGQX	.	GT	./.
chr1	155288506	.	C	.	.	LowGQX	END=155288509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155288510	.	G	.	.	LowGQX	.	GT	./.
chr1	155288511	.	G	.	.	LowGQX	END=155288512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155288513	.	A	.	.	LowGQX	.	GT	./.
chr1	155288514	.	A	.	.	LowGQX	END=155288525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155288526	.	T	.	.	LowGQX	.	GT	./.
chr1	155288527	.	C	.	.	LowGQX	END=155288550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155288634	.	T	.	.	LowGQX	END=155288733	GT	./.
chr1	155289391	.	T	.	.	LowGQX	END=155289490	GT	./.
chr1	155289583	.	A	.	.	LowGQX	END=155289721	GT	./.
chr1	155290198	.	A	.	.	LowGQX	END=155290318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155290319	.	T	.	.	LowGQX	END=155290340	GT	./.
chr1	155290341	.	C	.	.	LowGQX	END=155290402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155290558	.	G	.	.	LowGQX	END=155291287	GT	./.
chr1	155291556	.	G	.	.	LowGQX	END=155291571	GT	./.
chr1	155291572	.	C	.	.	LowGQX	END=155291601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155291602	.	A	.	.	LowGQX	.	GT	./.
chr1	155291603	.	C	.	.	LowGQX	END=155291604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155291605	.	A	.	.	LowGQX	.	GT	./.
chr1	155291606	.	C	.	.	LowGQX	END=155291627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155291628	.	C	.	.	LowGQX	.	GT	./.
chr1	155291629	.	T	.	.	LowGQX	END=155291646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155291647	.	G	.	.	LowGQX	.	GT	./.
chr1	155291648	.	C	.	.	LowGQX	END=155291654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155291655	.	G	.	.	LowGQX	.	GT	./.
chr1	155291656	.	A	.	.	LowGQX	END=155291671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155291672	.	T	.	.	LowGQX	.	GT	./.
chr1	155291673	.	T	.	.	LowGQX	END=155291675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155291676	.	A	.	.	LowGQX	.	GT	./.
chr1	155291677	.	G	.	.	LowGQX	END=155291680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155291681	.	A	.	.	LowGQX	.	GT	./.
chr1	155291682	.	C	.	.	LowGQX	END=155291697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155291698	.	A	.	.	LowGQX	END=155291700	GT	./.
chr1	155291701	.	C	.	.	LowGQX	END=155291712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155291713	.	A	.	.	LowGQX	.	GT	./.
chr1	155291714	.	G	.	.	LowGQX	END=155291722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155291723	.	C	.	.	LowGQX	END=155291848	GT	./.
chr1	155291849	.	C	.	.	LowGQX	END=155291978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155291979	.	A	.	.	LowGQX	.	GT	./.
chr1	155291980	.	T	.	.	LowGQX	END=155291986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155291987	.	G	.	.	LowGQX	.	GT	./.
chr1	155291988	.	G	.	.	LowGQX	END=155291993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155291994	.	G	.	.	LowGQX	.	GT	./.
chr1	155291995	.	G	.	.	LowGQX	END=155292050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292051	.	T	.	.	LowGQX	.	GT	./.
chr1	155292052	.	C	.	.	LowGQX	END=155292096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292097	.	T	.	.	LowGQX	END=155292205	GT	./.
chr1	155292206	.	G	.	.	LowGQX	END=155292240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292241	.	A	.	.	LowGQX	.	GT	./.
chr1	155292242	.	G	.	.	LowGQX	END=155292258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292259	.	A	.	.	LowGQX	.	GT	./.
chr1	155292260	.	C	.	.	LowGQX	END=155292282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292283	.	A	.	.	LowGQX	.	GT	./.
chr1	155292284	.	G	.	.	LowGQX	END=155292285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292286	.	A	.	.	LowGQX	.	GT	./.
chr1	155292287	.	A	.	.	LowGQX	END=155292303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292304	.	A	.	.	LowGQX	END=155292305	GT	./.
chr1	155292306	.	A	.	.	LowGQX	END=155292312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292313	.	A	.	.	LowGQX	.	GT	./.
chr1	155292314	.	A	.	.	LowGQX	END=155292333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292334	.	A	.	.	LowGQX	.	GT	./.
chr1	155292335	.	A	.	.	LowGQX	END=155292354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292355	.	C	.	.	LowGQX	END=155292449	GT	./.
chr1	155292450	.	G	.	.	LowGQX	END=155292471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292472	.	T	.	.	LowGQX	.	GT	./.
chr1	155292473	.	C	.	.	LowGQX	END=155292483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292484	.	C	.	.	LowGQX	.	GT	./.
chr1	155292485	.	G	.	.	LowGQX	END=155292487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292488	.	G	.	.	LowGQX	.	GT	./.
chr1	155292489	.	C	.	.	LowGQX	END=155292519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292520	.	T	.	.	LowGQX	.	GT	./.
chr1	155292521	.	G	.	.	LowGQX	END=155292522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292523	.	C	.	.	LowGQX	.	GT	./.
chr1	155292524	.	C	.	.	LowGQX	END=155292538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292539	.	G	.	.	LowGQX	.	GT	./.
chr1	155292540	.	G	.	.	LowGQX	END=155292566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292567	.	G	.	.	LowGQX	.	GT	./.
chr1	155292568	.	C	.	.	LowGQX	END=155292599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292600	.	T	.	.	LowGQX	END=155292919	GT	./.
chr1	155292920	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292921	.	G	.	.	LowGQX	.	GT	./.
chr1	155292922	.	G	.	.	LowGQX	END=155292923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155292924	.	A	.	.	LowGQX	.	GT	./.
chr1	155292925	.	A	.	.	LowGQX	END=155292930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155294166	.	C	.	.	LowGQX	END=155294376	GT	./.
chr1	155294634	.	A	.	.	LowGQX	END=155294635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155294636	.	T	.	.	LowGQX	END=155294642	GT	./.
chr1	155294643	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155294644	.	T	.	.	LowGQX	.	GT	./.
chr1	155294645	.	C	.	.	LowGQX	END=155294653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155294654	.	T	.	.	LowGQX	.	GT	./.
chr1	155294655	.	C	.	.	LowGQX	END=155294660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155294661	.	T	.	.	LowGQX	.	GT	./.
chr1	155294662	.	G	.	.	LowGQX	END=155294704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155294705	.	G	.	.	LowGQX	.	GT	./.
chr1	155294706	.	G	.	.	LowGQX	END=155294711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155294712	.	T	.	.	LowGQX	.	GT	./.
chr1	155294713	.	C	.	.	LowGQX	END=155294736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155294882	.	A	.	.	LowGQX	END=155294981	GT	./.
chr1	155294999	.	A	.	.	LowGQX	END=155295270	GT	./.
chr1	155295271	.	G	.	.	LowGQX	END=155295283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155295356	.	A	.	.	LowGQX	END=155295456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155295457	.	T	.	.	LowGQX	.	GT	./.
chr1	155295458	.	C	.	.	LowGQX	END=155295465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155295629	.	C	.	.	LowGQX	.	GT	./.
chr1	155295630	.	T	.	.	LowGQX	END=155295634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155295635	.	T	.	.	LowGQX	.	GT	./.
chr1	155295636	.	T	.	.	LowGQX	END=155295638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155295639	.	C	.	.	LowGQX	END=155295641	GT	./.
chr1	155295642	.	T	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	155295643	.	T	.	.	LowGQX	END=155295646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155295647	.	T	.	.	LowGQX	END=155295649	GT	./.
chr1	155295650	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155295651	.	C	.	.	LowGQX	END=155295652	GT	./.
chr1	155295653	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155295654	.	G	.	.	LowGQX	.	GT	./.
chr1	155295655	.	C	.	.	LowGQX	END=155295656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155295657	.	C	.	.	LowGQX	END=155295659	GT	./.
chr1	155295660	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155295661	.	G	.	.	LowGQX	.	GT	./.
chr1	155295662	.	C	.	.	LowGQX	END=155295664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155295665	.	T	.	.	LowGQX	.	GT	./.
chr1	155295666	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155295667	.	G	.	.	LowGQX	.	GT	./.
chr1	155295668	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155295669	.	A	.	.	LowGQX	.	GT	./.
chr1	155295670	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155295671	.	C	.	.	LowGQX	.	GT	./.
chr1	155295672	.	T	.	.	LowGQX	END=155295684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155295685	.	T	.	.	LowGQX	END=155295728	GT	./.
chr1	155296369	.	A	.	.	LowGQX	END=155296421	GT	./.
chr1	155296422	.	G	.	.	LowGQX	END=155296434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296435	.	C	.	.	LowGQX	.	GT	./.
chr1	155296436	.	C	.	.	LowGQX	END=155296461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296462	.	G	.	.	LowGQX	.	GT	./.
chr1	155296463	.	C	.	.	LowGQX	END=155296487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296488	.	A	.	.	LowGQX	.	GT	./.
chr1	155296489	.	C	.	.	LowGQX	END=155296508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296509	.	A	.	.	LowGQX	END=155296512	GT	./.
chr1	155296513	.	C	.	.	LowGQX	END=155296517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296518	.	A	.	.	LowGQX	.	GT	./.
chr1	155296519	.	C	.	.	LowGQX	END=155296527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296528	.	G	.	.	LowGQX	.	GT	./.
chr1	155296529	.	G	.	.	LowGQX	END=155296545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296546	.	T	.	.	LowGQX	.	GT	./.
chr1	155296547	.	G	.	.	LowGQX	END=155296549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296550	.	C	.	.	LowGQX	.	GT	./.
chr1	155296551	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296552	.	T	.	.	LowGQX	.	GT	./.
chr1	155296553	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296554	.	C	.	.	LowGQX	.	GT	./.
chr1	155296555	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296556	.	G	.	.	LowGQX	.	GT	./.
chr1	155296557	.	G	.	.	LowGQX	END=155296559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296560	.	C	.	.	LowGQX	END=155296561	GT	./.
chr1	155296562	.	C	.	.	LowGQX	END=155296563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296564	.	T	.	.	LowGQX	.	GT	./.
chr1	155296565	.	C	.	.	LowGQX	END=155296570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296571	.	C	.	.	LowGQX	END=155296581	GT	./.
chr1	155296582	.	T	.	.	LowGQX	END=155296584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296585	.	G	.	.	LowGQX	.	GT	./.
chr1	155296586	.	C	.	.	LowGQX	END=155296587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296588	.	A	.	.	LowGQX	.	GT	./.
chr1	155296589	.	G	.	.	LowGQX	END=155296591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296592	.	A	.	.	LowGQX	.	GT	./.
chr1	155296593	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296594	.	G	.	.	LowGQX	.	GT	./.
chr1	155296595	.	C	.	.	LowGQX	END=155296606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296607	.	G	.	.	LowGQX	.	GT	./.
chr1	155296608	.	G	.	.	LowGQX	END=155296624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296625	.	C	.	.	LowGQX	.	GT	./.
chr1	155296626	.	T	.	.	LowGQX	END=155296627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296628	.	C	.	.	LowGQX	.	GT	./.
chr1	155296629	.	G	.	.	LowGQX	END=155296630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296631	.	G	.	.	LowGQX	.	GT	./.
chr1	155296632	.	G	.	.	LowGQX	END=155296634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296635	.	C	.	.	LowGQX	.	GT	./.
chr1	155296636	.	T	.	.	LowGQX	END=155296643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296644	.	A	.	.	LowGQX	.	GT	./.
chr1	155296645	.	A	.	.	LowGQX	END=155296650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296651	.	T	.	.	LowGQX	.	GT	./.
chr1	155296652	.	T	.	.	LowGQX	END=155296668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296669	.	T	.	.	LowGQX	.	GT	./.
chr1	155296670	.	C	.	.	LowGQX	END=155296681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296682	.	A	.	.	LowGQX	.	GT	./.
chr1	155296683	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296684	.	A	.	.	LowGQX	.	GT	./.
chr1	155296685	.	C	.	.	LowGQX	END=155296688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296689	.	G	.	.	LowGQX	.	GT	./.
chr1	155296690	.	G	.	.	LowGQX	END=155296712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296713	.	A	.	.	LowGQX	.	GT	./.
chr1	155296714	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296715	.	G	.	.	LowGQX	.	GT	./.
chr1	155296716	.	C	.	.	LowGQX	END=155296719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296720	.	C	.	.	LowGQX	.	GT	./.
chr1	155296721	.	C	.	.	LowGQX	END=155296732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155296733	.	T	.	.	LowGQX	END=155296925	GT	./.
chr1	155297939	.	A	.	.	LowGQX	END=155298068	GT	./.
chr1	155300172	.	A	.	.	LowGQX	END=155300250	GT	./.
chr1	155300251	.	G	.	.	LowGQX	END=155300325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155300326	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	155300327	.	C	.	.	LowGQX	END=155300364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155307447	.	A	.	.	LowGQX	END=155307546	GT	./.
chr1	155307878	.	A	.	.	LowGQX	END=155308183	GT	./.
chr1	155309090	.	G	.	.	LowGQX	END=155309109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155309110	.	G	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr1	155309111	.	G	.	.	LowGQX	END=155309117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	155309118	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	155309119	.	C	.	.	LowGQX	END=155309120	GT	./.
chr1	155309121	.	T	.	.	LowGQX	END=155309124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155309125	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	155309126	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155309127	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	155309128	.	T	.	.	LowGQX	END=155309129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155309130	.	C	.	.	LowGQX	.	GT	./.
chr1	155309131	.	C	.	.	LowGQX	END=155309132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155309133	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	155309134	.	T	.	.	LowGQX	END=155309150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155309151	.	G	.	.	LowGQX	.	GT	./.
chr1	155309152	.	T	.	.	LowGQX	END=155309176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155309177	.	A	.	.	LowGQX	.	GT	./.
chr1	155309178	.	A	.	.	LowGQX	END=155309180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155309181	.	G	.	.	LowGQX	.	GT	./.
chr1	155309182	.	G	.	.	LowGQX	END=155309189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155311725	.	A	.	.	LowGQX	END=155311895	GT	./.
chr1	155313103	.	A	.	.	LowGQX	END=155313279	GT	./.
chr1	155313393	.	A	.	.	LowGQX	END=155313535	GT	./.
chr1	155313970	.	A	.	.	LowGQX	END=155314069	GT	./.
chr1	155315900	.	C	.	.	LowGQX	END=155315928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155315929	.	A	.	.	LowGQX	.	GT	./.
chr1	155315930	.	C	.	.	LowGQX	END=155315999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155316141	.	A	.	.	LowGQX	END=155316310	GT	./.
chr1	155317445	.	A	.	.	LowGQX	END=155317697	GT	./.
chr1	155319116	.	A	.	.	LowGQX	END=155319252	GT	./.
chr1	155319311	.	A	.	.	LowGQX	END=155319410	GT	./.
chr1	155322495	.	A	.	.	LowGQX	END=155322591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155322592	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	155322593	.	G	.	.	LowGQX	END=155322638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155322639	.	C	.	.	LowGQX	END=155322651	GT	./.
chr1	155324262	.	A	.	.	LowGQX	END=155324423	GT	./.
chr1	155327105	.	A	.	.	LowGQX	END=155327109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155327110	.	T	.	.	LowGQX	.	GT	./.
chr1	155327111	.	C	.	.	LowGQX	END=155327128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155327129	.	T	.	.	LowGQX	END=155327204	GT	./.
chr1	155327374	.	A	.	.	LowGQX	END=155327542	GT	./.
chr1	155330090	.	A	.	.	LowGQX	END=155330202	GT	./.
chr1	155340293	.	A	.	.	LowGQX	END=155340330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155340331	.	T	.	.	LowGQX	.	GT	./.
chr1	155340332	.	T	.	.	LowGQX	END=155340382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155340383	.	T	.	.	LowGQX	END=155340443	GT	./.
chr1	155340566	.	A	.	.	LowGQX	END=155340776	GT	./.
chr1	155348070	.	A	.	.	LowGQX	END=155348182	GT	./.
chr1	155348267	.	A	.	.	LowGQX	END=155348366	GT	./.
chr1	155349828	.	C	.	.	LowGQX	END=155349927	GT	./.
chr1	155365248	.	A	.	.	LowGQX	END=155365261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155365262	.	G	.	.	LowGQX	END=155365347	GT	./.
chr1	155385513	.	G	.	.	LowGQX	END=155385716	GT	./.
chr1	155402993	.	A	.	.	PASS	END=155403010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	155403011	.	C	.	.	PASS	END=155403051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:59
chr1	155403052	.	G	.	.	PASS	END=155403161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:59
chr1	155403162	.	C	.	.	PASS	END=155403202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	155403203	.	C	.	.	PASS	END=155403249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	155403250	.	T	.	.	PASS	END=155403279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	155403280	.	G	.	.	PASS	END=155403304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	155403305	.	C	.	.	PASS	END=155403319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	155403320	.	G	.	.	PASS	END=155403384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	155403385	.	C	.	.	PASS	END=155403451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	155403452	.	G	.	.	PASS	END=155403461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	155403462	.	A	.	.	PASS	END=155403543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	155403544	.	G	.	.	PASS	END=155403686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	155403687	.	A	.	.	PASS	END=155403724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	155403725	.	T	.	.	PASS	END=155403824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	155403825	.	G	.	.	PASS	END=155403853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	155408116	.	A	.	.	LowGQX	END=155408861	GT	./.
chr1	155429529	.	A	.	.	LowGQX	END=155429691	GT	./.
chr1	155447675	.	A	.	.	LowGQX	END=155447751	GT	./.
chr1	155447752	.	G	.	.	LowGQX	END=155447766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155447767	.	C	.	.	LowGQX	.	GT	./.
chr1	155447768	.	A	.	.	LowGQX	END=155447778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155447779	.	T	.	.	LowGQX	.	GT	./.
chr1	155447780	.	T	.	.	LowGQX	END=155447783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155447784	.	T	.	.	LowGQX	.	GT	./.
chr1	155447785	.	T	.	.	LowGQX	END=155447948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155447949	.	A	.	.	LowGQX	END=155452242	GT	./.
chr1	155490033	.	C	.	.	LowGQX	END=155490191	GT	./.
chr1	155490889	.	A	.	.	LowGQX	END=155491312	GT	./.
chr1	155531918	.	A	.	.	LowGQX	END=155531928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	155531929	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	155531930	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	155531931	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	155531932	.	C	.	.	LowGQX	END=155531944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	155531945	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	155531946	.	T	.	.	LowGQX	END=155531947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	155531948	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	155531949	.	C	.	.	LowGQX	END=155531951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	155531952	.	A	.	.	LowGQX	.	GT	./.
chr1	155531953	.	G	.	.	LowGQX	END=155531957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155531958	.	A	.	.	LowGQX	.	GT	./.
chr1	155531959	.	G	.	.	LowGQX	END=155531963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155531964	.	A	.	.	LowGQX	.	GT	./.
chr1	155531965	.	G	.	.	LowGQX	END=155532000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155532001	.	A	.	.	LowGQX	END=155532077	GT	./.
chr1	155532096	.	A	.	.	LowGQX	END=155532153	GT	./.
chr1	155532154	.	G	.	.	LowGQX	END=155532155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155532156	.	T	.	.	LowGQX	.	GT	./.
chr1	155532157	.	C	.	.	LowGQX	END=155532166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155532167	.	A	.	.	LowGQX	END=155532168	GT	./.
chr1	155532169	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155532170	.	C	.	.	LowGQX	END=155532171	GT	./.
chr1	155532172	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155532173	.	G	.	.	LowGQX	.	GT	./.
chr1	155532174	.	G	.	.	LowGQX	END=155532178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155532179	.	T	.	.	LowGQX	.	GT	./.
chr1	155532180	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155532181	.	T	.	.	LowGQX	.	GT	./.
chr1	155532182	.	C	.	.	LowGQX	END=155532185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155532186	.	T	.	.	LowGQX	.	GT	./.
chr1	155532187	.	C	.	.	LowGQX	END=155532191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155532192	.	A	.	.	LowGQX	.	GT	./.
chr1	155532193	.	A	.	.	LowGQX	END=155532196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155532197	.	A	.	.	LowGQX	.	GT	./.
chr1	155532198	.	A	.	.	LowGQX	END=155532206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155532207	.	G	.	.	LowGQX	.	GT	./.
chr1	155532208	.	G	.	.	LowGQX	END=155532209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155532210	.	G	.	.	LowGQX	.	GT	./.
chr1	155532211	.	G	.	.	LowGQX	END=155532251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155532252	.	G	.	.	LowGQX	END=155532253	GT	./.
chr1	155532254	.	G	.	.	LowGQX	END=155532255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155532256	.	T	.	.	LowGQX	.	GT	./.
chr1	155532257	.	G	.	.	LowGQX	END=155532268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155532269	.	T	.	.	LowGQX	.	GT	./.
chr1	155532270	.	C	.	.	LowGQX	END=155532271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155532272	.	T	.	.	LowGQX	.	GT	./.
chr1	155532273	.	C	.	.	LowGQX	END=155532303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155532304	.	C	.	.	LowGQX	END=155533025	GT	./.
chr1	155533041	.	T	.	.	LowGQX	END=155533359	GT	./.
chr1	155579977	.	C	.	.	LowGQX	END=155580131	GT	./.
chr1	155580183	.	A	.	.	LowGQX	END=155580353	GT	./.
chr1	155580815	.	G	.	.	LowGQX	END=155580914	GT	./.
chr1	155580995	.	A	.	.	LowGQX	END=155581094	GT	./.
chr1	155581218	.	G	.	.	LowGQX	END=155581396	GT	./.
chr1	155581447	.	G	.	.	LowGQX	END=155581620	GT	./.
chr1	155581757	.	A	.	.	LowGQX	END=155581893	GT	./.
chr1	155581971	.	A	.	.	LowGQX	END=155581986	GT	./.
chr1	155581987	.	G	.	.	LowGQX	END=155581991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155581992	.	A	.	.	LowGQX	.	GT	./.
chr1	155581993	.	C	.	.	LowGQX	END=155582055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582056	.	A	.	.	LowGQX	.	GT	./.
chr1	155582057	.	G	.	.	LowGQX	END=155582080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582081	.	C	.	.	LowGQX	.	GT	./.
chr1	155582082	.	T	.	.	LowGQX	END=155582099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582100	.	A	.	.	LowGQX	.	GT	./.
chr1	155582101	.	T	.	.	LowGQX	END=155582109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582207	.	A	.	.	LowGQX	END=155582219	GT	./.
chr1	155582220	.	A	.	.	LowGQX	END=155582227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582228	.	A	.	.	LowGQX	.	GT	./.
chr1	155582229	.	T	.	.	LowGQX	END=155582230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582231	.	G	.	.	LowGQX	.	GT	./.
chr1	155582232	.	T	.	.	LowGQX	END=155582233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582234	.	T	.	.	LowGQX	.	GT	./.
chr1	155582235	.	A	.	.	LowGQX	END=155582244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582245	.	G	.	.	LowGQX	END=155582246	GT	./.
chr1	155582247	.	T	.	.	LowGQX	END=155582250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582251	.	G	.	.	LowGQX	END=155582252	GT	./.
chr1	155582253	.	T	.	.	LowGQX	END=155582254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582255	.	T	.	.	LowGQX	.	GT	./.
chr1	155582256	.	C	.	.	LowGQX	END=155582257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582258	.	T	.	.	LowGQX	.	GT	./.
chr1	155582259	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582260	.	C	.	.	LowGQX	.	GT	./.
chr1	155582261	.	A	.	.	LowGQX	END=155582265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582266	.	A	.	.	LowGQX	.	GT	./.
chr1	155582267	.	C	.	.	LowGQX	END=155582276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582277	.	C	.	.	LowGQX	.	GT	./.
chr1	155582278	.	T	.	.	LowGQX	END=155582282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582283	.	T	.	.	LowGQX	.	GT	./.
chr1	155582284	.	G	.	.	LowGQX	END=155582286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582287	.	T	.	.	LowGQX	.	GT	./.
chr1	155582288	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582289	.	C	.	.	LowGQX	.	GT	./.
chr1	155582290	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582291	.	C	.	.	LowGQX	.	GT	./.
chr1	155582292	.	C	.	.	LowGQX	END=155582298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582299	.	T	.	.	LowGQX	.	GT	./.
chr1	155582300	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582301	.	G	.	.	LowGQX	.	GT	./.
chr1	155582302	.	G	.	.	LowGQX	END=155582360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582361	.	T	.	.	LowGQX	.	GT	./.
chr1	155582362	.	G	.	.	LowGQX	END=155582363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155582633	.	A	.	.	LowGQX	END=155582768	GT	./.
chr1	155582838	.	A	.	.	LowGQX	END=155583026	GT	./.
chr1	155583216	.	C	.	.	LowGQX	END=155583230	GT	./.
chr1	155583231	.	G	.	.	LowGQX	END=155583300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:42
chr1	155583301	.	C	.	.	LowGQX;LowMQ	END=155583359	GT	./.
chr1	155583446	.	A	.	.	LowGQX;LowMQ	END=155583480	GT	./.
chr1	155583481	.	G	.	.	LowGQX	END=155583609	GT	./.
chr1	155583848	.	A	.	.	LowGQX	END=155584066	GT	./.
chr1	155629446	.	G	.	.	PASS	END=155629487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	155629488	.	T	.	.	PASS	END=155629664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	155629665	.	G	.	.	PASS	END=155629794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:259:99:57
chr1	155629795	.	G	.	.	PASS	END=155629869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:56
chr1	155629870	.	A	.	.	PASS	END=155629926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:59
chr1	155629927	.	T	.	.	PASS	END=155629948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	155629949	.	A	.	.	PASS	END=155629969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	155629970	.	G	.	.	PASS	END=155630030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	155630031	.	A	.	.	PASS	END=155630058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	155630059	.	T	.	.	PASS	END=155630089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	155630090	.	C	.	.	PASS	END=155630181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:58
chr1	155630182	.	G	.	.	PASS	END=155630253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:50
chr1	155630254	.	G	.	.	PASS	END=155630295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:47
chr1	155630296	.	G	.	.	PASS	END=155630398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:46
chr1	155630399	.	G	.	.	PASS	END=155630458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:52
chr1	155630459	.	G	.	.	PASS	END=155630515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	155630516	.	A	.	.	PASS	END=155630553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr1	155630554	.	G	.	.	PASS	END=155630658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:60
chr1	155630659	.	C	.	.	PASS	END=155630685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	155630686	.	G	.	.	PASS	END=155630716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	155630717	.	A	.	.	PASS	END=155630724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	155631019	.	A	.	.	PASS	END=155631058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:47
chr1	155631059	.	C	.	.	PASS	END=155631088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:41
chr1	155631089	.	G	.	.	PASS	END=155631130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:36
chr1	155631131	.	C	.	.	PASS	END=155631216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:37
chr1	155638416	.	A	.	.	PASS	END=155638418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	155638419	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:60
chr1	155638420	.	T	.	.	PASS	END=155638433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	155638434	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:60
chr1	155638435	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:99:60
chr1	155638436	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:60
chr1	155638437	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:99:60
chr1	155638438	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:66:60
chr1	155638439	.	T	.	.	PASS	END=155638469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	155638470	.	G	.	.	PASS	END=155638486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	155638487	.	C	.	.	PASS	END=155638542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	155638543	.	A	.	.	PASS	END=155638564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	155638565	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:33:60
chr1	155638566	.	A	.	.	PASS	END=155638570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	155640109	.	A	.	.	PASS	END=155640257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	155642349	.	A	.	.	PASS	END=155642387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:38
chr1	155642388	.	G	.	.	PASS	END=155642475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:37
chr1	155642476	.	T	.	.	PASS	END=155642514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:49
chr1	155642515	.	A	.	.	PASS	END=155642524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:55
chr1	155644795	.	A	.	.	LowGQX	END=155644825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	155644826	.	T	.	.	LowGQX	END=155644844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	155644845	.	T	.	.	LowGQX	END=155644888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	155644889	.	T	.	.	LowGQX	END=155644894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	155646337	.	A	.	.	LowGQX	END=155646366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	155646367	.	C	.	.	LowGQX	END=155646376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	155646377	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	155646378	.	G	.	.	LowGQX	END=155646395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	155646396	.	A	.	.	LowGQX	END=155646402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	155646403	.	T	.	.	LowGQX	END=155646404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	155646405	.	C	.	.	PASS	END=155646406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	155646407	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	155646408	.	A	.	.	PASS	END=155646409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	155646410	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	155646411	.	C	.	.	PASS	END=155646433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	155646434	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	155646435	.	C	.	.	PASS	END=155646442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155646443	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	155646444	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155646445	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	155646446	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155646447	.	G	.	12.55	LowGQX	DP=14;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:11:14:0.07:60:0
chr1	155646448	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155646449	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:0:60
chr1	155646450	.	T	.	.	LowGQX	END=155646451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr1	155646452	.	A	.	.	PASS	END=155646454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155646455	.	G	.	.	LowGQX	END=155646456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr1	155646457	.	T	.	.	PASS	END=155646458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155646459	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	155646460	.	T	.	.	PASS	END=155646463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155646464	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	155646465	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155646466	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	155646467	.	T	.	.	PASS	END=155646469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155646470	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	155646471	.	C	.	.	PASS	END=155646520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	155646521	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	155646522	.	C	.	.	PASS	END=155646527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	155646528	.	T	.	.	LowGQX	END=155646529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	155646530	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155646531	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	155646532	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155646533	.	C	.	.	LowGQX	END=155646534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	155646535	.	A	.	.	PASS	END=155646537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	155646538	.	C	.	.	LowGQX	END=155646539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	155649046	.	T	.	.	PASS	END=155649053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	155649054	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:34:60
chr1	155649055	.	A	.	.	PASS	END=155649058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	155649059	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:60
chr1	155649060	.	A	.	.	PASS	END=155649062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	155649063	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:60
chr1	155649064	.	C	.	.	PASS	END=155649074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	155649075	.	C	.	.	PASS	END=155649097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:89:60
chr1	155649098	.	A	.	.	PASS	END=155649145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	155649198	.	A	.	.	PASS	END=155649225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	155649226	.	A	.	.	PASS	END=155649242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	155649243	.	C	.	.	PASS	END=155649248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	155649249	.	C	.	.	PASS	END=155649252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	155649253	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:56:60
chr1	155649254	.	T	.	.	PASS	END=155649258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	155649259	.	T	.	.	PASS	END=155649262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	155649263	.	C	.	.	PASS	END=155649278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	155649279	.	T	.	.	PASS	END=155649294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	155649295	.	A	.	.	PASS	END=155649303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	155649304	.	C	.	.	PASS	END=155649305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	155650178	.	C	.	.	PASS	END=155650219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	155650220	.	T	.	.	PASS	END=155650267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	155650268	.	G	.	.	PASS	END=155650277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	155657860	.	A	.	.	LowGQX	END=155658255	GT	./.
chr1	155658635	.	G	.	.	LowGQX	END=155658848	GT	./.
chr1	155679544	.	T	.	.	LowGQX	END=155679548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155679549	.	T	.	.	LowGQX	.	GT	./.
chr1	155679550	.	T	.	.	LowGQX	END=155679592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155679593	.	G	.	.	LowGQX	.	GT	./.
chr1	155679594	.	G	.	.	LowGQX	END=155679643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155686795	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155686796	.	G	.	.	LowGQX	END=155686798	GT	./.
chr1	155686799	.	G	.	.	LowGQX	END=155686810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155686811	.	T	.	.	LowGQX	.	GT	./.
chr1	155686812	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155686813	.	T	.	.	LowGQX	.	GT	./.
chr1	155686814	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155686815	.	T	.	.	LowGQX	.	GT	./.
chr1	155686816	.	T	.	.	LowGQX	END=155686921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155691306	.	A	.	.	LowGQX	END=155691410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155691411	.	T	.	.	LowGQX	.	GT	./.
chr1	155695171	.	A	.	.	LowGQX	END=155695283	GT	./.
chr1	155695715	.	T	.	.	LowGQX	END=155695814	GT	./.
chr1	155697397	.	A	.	.	LowGQX	END=155697531	GT	./.
chr1	155698824	.	T	.	.	LowGQX	END=155698841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155698842	.	C	.	.	LowGQX	.	GT	./.
chr1	155698843	.	A	.	.	LowGQX	END=155698884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155698885	.	G	.	.	LowGQX	.	GT	./.
chr1	155698886	.	G	.	.	LowGQX	END=155698923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155698997	.	A	.	.	LowGQX	END=155699079	GT	./.
chr1	155699080	.	T	.	.	LowGQX	END=155699159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155701127	.	T	.	.	LowGQX	END=155701226	GT	./.
chr1	155701730	.	T	.	.	LowGQX	END=155701829	GT	./.
chr1	155706685	.	C	.	.	LowGQX	END=155706694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155706695	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	155706696	.	T	.	.	LowGQX	END=155706697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155706698	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	155706699	.	C	.	.	LowGQX	END=155706715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155706716	.	C	.	.	LowGQX	.	GT	./.
chr1	155706717	.	T	.	.	LowGQX	END=155706739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155706740	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	155706741	.	G	.	.	LowGQX	END=155706746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155706747	.	A	.	.	LowGQX	.	GT	./.
chr1	155706748	.	T	.	.	LowGQX	END=155706772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155706773	.	C	.	.	LowGQX	.	GT	./.
chr1	155706774	.	T	.	.	LowGQX	END=155706825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155706826	.	G	.	.	LowGQX	.	GT	./.
chr1	155706827	.	G	.	.	LowGQX	END=155706845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155706846	.	A	.	.	LowGQX	END=155706856	GT	./.
chr1	155707941	.	A	.	.	LowGQX	END=155708018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155708019	.	T	.	.	LowGQX	END=155708040	GT	./.
chr1	155715559	.	A	.	.	LowGQX	END=155715711	GT	./.
chr1	155715755	.	C	.	.	LowGQX;LowMQ	END=155715844	GT	./.
chr1	155715845	.	T	.	.	LowGQX	END=155715931	GT	./.
chr1	155716335	.	G	.	.	LowGQX	END=155716494	GT	./.
chr1	155716544	.	G	.	.	LowGQX	END=155716702	GT	./.
chr1	155716703	.	A	.	.	LowGQX	END=155716717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:58
chr1	155716718	.	T	.	.	LowGQX	.	GT	./.
chr1	155716719	.	A	.	.	LowGQX	END=155716726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:58
chr1	155716897	.	T	.	.	LowGQX	END=155716903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	155716904	.	T	.	.	LowGQX	.	GT	./.
chr1	155716905	.	T	.	.	LowGQX	END=155716907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	155716908	.	G	.	.	LowGQX	.	GT	./.
chr1	155716909	.	A	.	.	LowGQX	END=155716933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	155716934	.	T	.	.	LowGQX	.	GT	./.
chr1	155716935	.	G	.	.	LowGQX	END=155716939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	155716940	.	T	.	.	LowGQX	.	GT	./.
chr1	155716941	.	G	.	.	LowGQX	END=155716948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	155716949	.	G	.	.	LowGQX	.	GT	./.
chr1	155716950	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:48
chr1	155716951	.	T	.	.	LowGQX	.	GT	./.
chr1	155716952	.	C	.	.	LowGQX	END=155716962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	155716963	.	C	.	.	LowGQX	END=155716996	GT	./.
chr1	155717019	.	A	.	.	LowGQX	END=155717198	GT	./.
chr1	155717353	.	G	.	.	LowGQX	END=155717741	GT	./.
chr1	155720363	.	A	.	.	PASS	END=155720372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:39
chr1	155720373	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:39
chr1	155720374	.	C	.	.	PASS	END=155720378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:39
chr1	155720379	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:39
chr1	155720380	.	C	.	.	PASS	END=155720383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:39
chr1	155720384	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:39
chr1	155720385	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:39
chr1	155720386	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:39
chr1	155720387	.	C	.	.	PASS	END=155720395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:39
chr1	155720396	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:39
chr1	155720397	.	G	.	.	PASS	END=155720402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:38
chr1	155720403	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:39
chr1	155720404	.	G	.	.	PASS	END=155720405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:39
chr1	155720406	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:39
chr1	155720407	.	C	.	.	PASS	END=155720408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:39
chr1	155720409	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:39
chr1	155720410	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:39
chr1	155720411	.	A	.	.	LowGQX	END=155720412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:27:39
chr1	155720413	.	G	.	.	PASS	END=155720414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:39
chr1	155720415	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:21:39
chr1	155720416	.	C	.	.	PASS	END=155720418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:39
chr1	155720419	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:39
chr1	155720420	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:39
chr1	155720421	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:39
chr1	155720422	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:38
chr1	155720423	.	C	.	.	LowGQX	END=155720424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:38
chr1	155720425	.	G	.	.	PASS	END=155720426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:38
chr1	155720427	.	T	.	.	LowGQX	END=155720428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:38
chr1	155720429	.	T	.	.	PASS	END=155720431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:38
chr1	155720432	.	A	.	.	LowGQX	END=155720433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:38
chr1	155720434	.	T	.	.	PASS	END=155720439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:38
chr1	155720440	.	T	.	.	LowGQX	END=155720455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:39
chr1	155720456	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:0:39
chr1	155720457	.	T	.	.	LowGQX	END=155720492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:38
chr1	155720493	.	A	.	.	LowGQX	END=155720499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:48
chr1	155720500	.	T	.	.	LowGQX	END=155720503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:49
chr1	155720504	.	T	.	.	LowGQX	END=155720508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:52
chr1	155720509	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:57
chr1	155720510	.	A	.	.	LowGQX	END=155720516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:57
chr1	155720517	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:57
chr1	155720518	.	G	.	.	LowGQX	END=155720524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:57
chr1	155721557	.	C	.	.	PASS	END=155721602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:51
chr1	155721603	.	G	.	.	PASS	END=155721660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:48
chr1	155721750	.	C	.	.	PASS	END=155721754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:53
chr1	155721755	.	T	.	.	PASS	END=155721787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:56
chr1	155721788	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:66:59
chr1	155721789	.	C	.	.	PASS	END=155721811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:59
chr1	155721812	.	T	.	.	PASS	END=155721833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	155721834	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:60:60
chr1	155721835	.	T	.	.	PASS	END=155721849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	155721850	.	C	.	.	PASS	END=155721886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:55
chr1	155721887	.	C	.	.	PASS	END=155721989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:42
chr1	155721990	.	C	.	.	PASS	END=155722013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:33
chr1	155722014	.	T	.	.	PASS	END=155722015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:66:33
chr1	155722016	.	T	.	.	PASS	END=155722031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:75:32
chr1	155722032	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:32
chr1	155722033	.	C	.	.	PASS	END=155722041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:30
chr1	155722042	.	T	.	.	PASS	END=155722046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:72:29
chr1	155722047	.	G	.	.	PASS	END=155722059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:75:28
chr1	155722060	.	A	.	.	PASS	END=155722085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:72:26
chr1	155722086	.	T	.	.	PASS	END=155722095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:60:26
chr1	155722096	.	C	.	.	PASS	END=155722106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:75:24
chr1	155722107	.	C	.	.	PASS	END=155722135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:80:21
chr1	155722136	.	T	.	.	PASS	END=155722137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:69:21
chr1	155722138	.	A	.	.	PASS	END=155722148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:75:21
chr1	155722149	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:69:54:22
chr1	155722150	.	T	.	.	PASS	END=155722160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:72:21
chr1	155722161	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:68:53:21
chr1	155722162	.	T	.	.	PASS	END=155722187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:69:21
chr1	155722188	.	T	.	.	PASS	END=155722196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:63:21
chr1	155722197	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:51:21
chr1	155722198	.	G	.	.	PASS	END=155722211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:57:20
chr1	155722212	.	G	.	.	PASS	END=155722244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:51:20
chr1	155722245	.	A	.	.	PASS	END=155722246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:45:21
chr1	155722247	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:40:8:22
chr1	155722248	.	G	.	.	PASS	END=155722254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:39:22
chr1	155722255	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:24:21
chr1	155722256	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:30:21
chr1	155722257	.	A	.	.	LowGQX	END=155722258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:15:21
chr1	155722259	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:21:21
chr1	155722260	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:15:22
chr1	155722261	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:21:22
chr1	155722262	.	C	.	.	LowGQX	END=155722266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:12:20
chr1	155722267	.	G	.	.	LowGQX	END=155722269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:9:20
chr1	155722270	.	G	.	.	LowGQX	END=155722272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:12:22
chr1	155722273	.	G	.	.	LowGQX	END=155722274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:9:22
chr1	155722275	.	A	.	.	LowGQX	END=155722280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:12:23
chr1	155722281	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:9:23
chr1	155722282	.	G	.	.	LowGQX	END=155722285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:12:23
chr1	155722286	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:9:24
chr1	155722287	.	C	.	.	LowGQX	END=155722288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:12:24
chr1	155722289	.	C	.	.	LowGQX	END=155722292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:9:23
chr1	155722293	.	T	.	36.01	LowGQX	DP=10;MQ=23;MQ0=4	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:6.01:23:6
chr1	155722294	.	G	.	.	LowGQX	END=155722296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:6:23
chr1	155722297	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:3:23
chr1	155722298	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:9:23
chr1	155722299	.	A	.	.	LowGQX	END=155722300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:3:23
chr1	155722301	.	G	.	.	LowGQX	END=155722302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:6:29
chr1	155722303	.	G	.	.	LowGQX	END=155722304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:9:29
chr1	155722305	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:3:29
chr1	155722306	.	G	.	.	LowGQX	END=155722311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:6:29
chr1	155722312	.	T	.	.	LowGQX	END=155722316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:36
chr1	155722317	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:3:36
chr1	155722318	.	A	.	.	LowGQX	END=155722326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:36
chr1	155722327	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:3:36
chr1	155722328	.	C	.	.	LowGQX	END=155722331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:40
chr1	155722332	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:3:43
chr1	155722333	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:43
chr1	155722334	.	C	.	33	LowGQX	DP=5;MQ=47;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:47:3
chr1	155722335	.	A	.	.	LowGQX	END=155722336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:53
chr1	155722337	.	T	.	.	LowGQX	END=155722339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:53
chr1	155722340	.	C	.	.	LowGQX	END=155722341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:53
chr1	155722342	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:53
chr1	155722343	.	C	.	.	LowGQX	END=155722344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:53
chr1	155722345	.	C	.	.	LowGQX	END=155722351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:53
chr1	155722352	.	A	.	.	LowGQX	END=155722353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:53
chr1	155722354	.	G	.	.	LowGQX	END=155722357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:53
chr1	155722358	.	A	.	.	LowGQX	END=155722360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:53
chr1	155722361	.	T	.	.	LowGQX	END=155722366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:53
chr1	155722367	.	C	.	.	LowGQX	END=155722375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:53
chr1	155722376	.	A	.	.	LowGQX	END=155722377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	155722378	.	C	.	.	LowGQX	END=155722379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	155722380	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	155722381	.	G	.	.	LowGQX	END=155722387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	155722388	.	A	.	.	LowGQX	.	GT	./.
chr1	155722389	.	G	.	.	LowGQX	END=155722392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	155722393	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	155722394	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	155722395	.	T	.	.	LowGQX	END=155722400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	155722401	.	T	G	26.01	LowGQ;LowGQX;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=0.736;QD=8.67;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,2:3:6.01:57,6,0:60:6:0.667
chr1	155722402	.	C	.	.	LowGQX	END=155722405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	155722406	.	G	.	.	LowGQX	END=155722408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	155722409	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	155722410	.	A	.	.	LowGQX	END=155722418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	155722419	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:3.01:60:3
chr1	155722420	.	T	.	.	LowGQX	END=155722424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	155722425	.	A	.	.	LowGQX	END=155722426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	155722427	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	155722428	.	C	.	.	LowGQX	END=155722429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	155722994	.	C	.	.	PASS	END=155723058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	155723059	.	C	.	.	PASS	END=155723131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	155723132	.	C	.	.	PASS	END=155723170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:81:60
chr1	155723171	.	G	.	.	PASS	END=155723197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	155723198	.	T	.	.	PASS	END=155723203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr1	155723204	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:71:60
chr1	155723205	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:96:60
chr1	155724077	.	T	.	.	PASS	END=155724107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	155724108	.	G	.	.	PASS	END=155724138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:94:60
chr1	155724139	.	C	.	.	PASS	END=155724193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	155724194	.	C	.	.	PASS	END=155724248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	155724249	.	A	.	.	PASS	END=155724258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	155724259	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:69:60
chr1	155724260	.	C	.	.	PASS	END=155724261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	155724262	.	A	.	.	PASS	END=155724265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	155724266	.	G	.	.	PASS	END=155724271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	155724272	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:48:60
chr1	155724273	.	C	.	.	PASS	END=155724279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	155726748	.	C	.	.	PASS	END=155726838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	155726839	.	A	.	.	PASS	END=155726868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	155726970	.	C	.	.	PASS	END=155727013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	155727014	.	C	.	.	PASS	END=155727084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	155727085	.	C	.	.	PASS	END=155727102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	155727103	.	C	.	.	PASS	END=155727114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	155727669	.	C	.	.	LowGQX;LowMQ	END=155727671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:9:8
chr1	155727672	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:91:15:9
chr1	155727673	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:93:9:9
chr1	155727674	.	A	.	.	LowGQX;LowMQ	END=155727679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:12:9
chr1	155727680	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:99:9:9
chr1	155727681	.	C	.	.	LowGQX;LowMQ	END=155727690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:15:9
chr1	155727691	.	C	.	.	LowGQX;LowMQ	END=155727704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:18:10
chr1	155727705	.	A	.	.	LowGQX;LowMQ	END=155727706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:15:9
chr1	155727707	.	T	.	.	LowGQX;LowMQ	END=155727709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:18:9
chr1	155727710	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:135:24:10
chr1	155727711	.	C	.	.	LowGQX;LowMQ	END=155727715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:18:9
chr1	155727716	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:150:15:9
chr1	155727717	.	C	.	.	LowGQX;LowMQ	END=155727721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:21:9
chr1	155727722	.	A	.	.	LowGQX;LowMQ	END=155727724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:18:9
chr1	155727725	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:153:0:9
chr1	155727726	.	C	.	.	LowGQX;LowMQ	END=155727728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:15:9
chr1	155727729	.	T	.	.	LowGQX;LowMQ	END=155727731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:18:8
chr1	155727732	.	T	.	.	LowGQX;LowMQ	END=155727737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:15:8
chr1	155727738	.	T	.	.	LowGQX;LowMQ	END=155727740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:18:8
chr1	155727741	.	G	.	.	LowGQX;LowMQ	END=155727743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:15:8
chr1	155727744	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:163:24:9
chr1	155727745	.	G	.	.	LowGQX;LowMQ	END=155727746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:18:9
chr1	155727747	.	G	.	.	LowGQX;LowMQ	END=155727750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:21:8
chr1	155727751	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:176:18:9
chr1	155727752	.	G	.	.	LowGQX;LowMQ	END=155727754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:24:8
chr1	155727755	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:174:15:9
chr1	155727756	.	T	.	.	LowGQX;LowMQ	END=155727766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:21:9
chr1	155727767	.	C	.	.	LowGQX;LowMQ	END=155727768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:15:9
chr1	155727769	.	A	.	.	LowGQX;LowMQ	END=155727771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:24:8
chr1	155727772	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:187:18:8
chr1	155727773	.	T	.	.	LowGQX;LowMQ	END=155727784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:21:8
chr1	155727785	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:184:2:8
chr1	155727786	.	G	.	.	LowGQX;LowMQ	END=155727787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:24:8
chr1	155727788	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:184:9:8
chr1	155727789	.	A	.	.	LowGQX;LowMQ	END=155727791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:18:8
chr1	155727792	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:181:15:8
chr1	155727793	.	G	.	.	LowGQX;LowMQ	END=155727794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:21:8
chr1	155727795	.	G	.	.	LowGQX;LowMQ	END=155727798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:18:8
chr1	155727799	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:178:9:8
chr1	155727800	.	T	.	.	LowGQX;LowMQ	END=155727809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:15:8
chr1	155727810	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:164:9:8
chr1	155727811	.	C	.	.	LowGQX;LowMQ	END=155727818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:18:8
chr1	155727819	.	C	.	.	LowGQX;LowMQ	END=155727822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:15:8
chr1	155727823	.	A	.	.	LowGQX;LowMQ	END=155727825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:12:8
chr1	155730234	.	C	.	.	PASS	END=155730251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	155730252	.	C	.	.	PASS	END=155730291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	155730292	.	C	.	.	PASS	END=155730369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	155730370	.	T	.	.	PASS	END=155730423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	155730424	.	T	.	.	PASS	END=155730432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	155731980	.	C	.	.	PASS	END=155732030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	155732031	.	G	.	.	PASS	END=155732090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	155732091	.	C	.	.	PASS	END=155732120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	155732121	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:72:60
chr1	155732122	.	T	.	.	PASS	END=155732138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	155732139	.	C	.	.	PASS	END=155732165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	155733102	.	C	.	.	PASS	END=155733123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	155733124	.	C	.	.	PASS	END=155733137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	155733138	.	G	.	.	PASS	END=155733165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	155733166	.	T	.	.	PASS	END=155733261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	155733262	.	C	.	.	PASS	END=155733292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	155733293	.	A	.	.	PASS	END=155733310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	155733311	.	C	.	.	PASS	END=155733321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	155733322	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:75:60
chr1	155733323	.	A	.	.	PASS	END=155733327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	155733328	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:63:60
chr1	155733329	.	C	.	.	PASS	END=155733343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	155733344	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:75:60
chr1	155733345	.	T	.	.	PASS	END=155733355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	155734623	.	C	.	.	PASS	END=155734624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:52
chr1	155734625	.	T	.	.	PASS	END=155734632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:52
chr1	155734633	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:45:52
chr1	155734634	.	A	.	.	PASS	END=155734641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:52
chr1	155734642	.	T	.	.	PASS	END=155734661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:53
chr1	155734662	.	T	.	.	PASS	END=155734687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:89:54
chr1	155734688	.	T	.	.	PASS	END=155734695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:56
chr1	155734696	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:72:56
chr1	155734697	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:99:56
chr1	155734698	.	A	.	.	PASS	END=155734728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:57
chr1	155734729	.	A	.	.	PASS	END=155734743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	155734744	.	A	.	.	PASS	END=155734782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	155734783	.	G	.	.	PASS	END=155734892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:59
chr1	155734893	.	T	.	.	PASS	END=155735011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	155735012	.	T	C	2800.30	PASS	BaseQRankSum=0.156;DP=201;Dels=0.00;FS=6.135;HRun=0;HaplotypeScore=28.6162;MQ=60;MQ0=0;MQRankSum=-0.923;QD=13.93;ReadPosRankSum=2.039;SB=-1535.90	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:97,101:201:99:2830,0,2780:60:99:0.510
chr1	155735013	.	T	.	.	PASS	END=155735155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	155735156	.	C	.	.	PASS	END=155735183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr1	155735184	.	G	.	.	PASS	END=155735211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:316:99:60
chr1	155735212	.	T	.	.	PASS	END=155735272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:418:99:60
chr1	155735273	.	C	.	.	PASS	END=155735365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:431:99:60
chr1	155735366	.	G	.	.	PASS	END=155735504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:335:99:59
chr1	155735505	.	T	.	.	PASS	END=155735597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:256:99:57
chr1	155735598	.	T	.	.	PASS	END=155735651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:55
chr1	155735652	.	T	.	.	PASS	END=155735699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:57
chr1	155735700	.	A	.	.	PASS	END=155735736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	155735737	.	T	.	.	PASS	END=155735762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	155735763	.	G	.	.	PASS	END=155735822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	155735823	.	A	.	.	PASS	END=155735866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	155735867	.	G	.	.	PASS	END=155735909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	155735910	.	T	.	.	PASS	END=155735972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:58
chr1	155735973	.	C	.	.	PASS	END=155736049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:51
chr1	155736050	.	G	.	.	PASS	END=155736191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:259:99:46
chr1	155736192	.	T	.	.	PASS	END=155736253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:52
chr1	155736254	.	G	.	.	PASS	END=155736303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	155736304	.	C	.	.	PASS	END=155736342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:247:99:60
chr1	155736343	.	G	.	.	PASS	END=155736462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:289:99:60
chr1	155736463	.	A	.	.	PASS	END=155736494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	155736495	.	A	.	.	PASS	END=155736531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	155736532	.	T	.	.	PASS	END=155736551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	155737165	.	A	.	.	PASS	END=155737207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:35
chr1	155737208	.	G	.	.	PASS	END=155737235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:30
chr1	155737236	.	G	.	.	PASS	END=155737345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:24
chr1	155737346	.	A	.	.	PASS	END=155737366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:27
chr1	155737367	.	C	.	.	PASS	END=155737383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:33
chr1	155740807	.	A	.	.	LowGQX	END=155740809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	155740810	.	G	.	.	PASS	END=155740814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	155740815	.	A	.	.	PASS	END=155740817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	155740818	.	T	.	.	PASS	END=155740827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	155740828	.	G	.	.	PASS	END=155740845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	155740846	.	G	.	.	PASS	END=155740852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	155740853	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:45:60
chr1	155740854	.	T	.	.	PASS	END=155740859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	155740860	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:66:60
chr1	155740861	.	A	.	.	PASS	END=155740879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	155740880	.	C	.	.	PASS	END=155740908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	155740909	.	T	.	.	PASS	END=155740933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	155740934	.	G	.	.	PASS	END=155741030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	155741031	.	A	.	.	PASS	END=155741058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:88:60
chr1	155741059	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:99:60
chr1	155742806	.	T	.	.	PASS	END=155742814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	155742815	.	T	.	.	PASS	END=155742838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	155742839	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:33:60
chr1	155742840	.	C	.	.	PASS	END=155742846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	155742847	.	A	.	.	PASS	END=155742868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	155742869	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:63:60
chr1	155742870	.	T	.	.	PASS	END=155742878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	155742879	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:66:60
chr1	155742880	.	G	.	.	PASS	END=155742918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	155742919	.	T	.	.	PASS	END=155743016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	155743017	.	T	.	.	PASS	END=155743034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	155743035	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:75:60
chr1	155743036	.	T	.	.	PASS	END=155743040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	155743041	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:66:60
chr1	155743042	.	A	.	.	PASS	END=155743052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	155744730	.	G	.	.	PASS	END=155744778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:47
chr1	155744779	.	C	.	.	PASS	END=155744827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:41
chr1	155744828	.	A	.	.	PASS	END=155744926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:38
chr1	155744927	.	A	.	.	PASS	END=155744958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:50
chr1	155744959	.	C	.	.	PASS	END=155744997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:55
chr1	155744998	.	A	.	.	PASS	END=155745015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	155746135	.	A	.	.	PASS	END=155746148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	155746149	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:60:60
chr1	155746150	.	T	.	.	PASS	END=155746160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	155746161	.	G	.	.	PASS	END=155746260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:87:60
chr1	155746261	.	G	.	.	PASS	END=155746272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	155746273	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:51:60
chr1	155746274	.	T	.	.	PASS	END=155746292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	155746293	.	A	.	.	PASS	END=155746305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:72:60
chr1	155746306	.	T	.	.	PASS	END=155746315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	155746316	.	G	.	.	PASS	END=155746318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr1	155746319	.	A	.	.	PASS	END=155746322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	155746323	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:45:60
chr1	155747362	.	T	.	.	PASS	END=155747378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:39:60
chr1	155747379	.	A	.	.	PASS	END=155747384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	155747385	.	A	.	.	PASS	END=155747394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	155747395	.	G	.	.	PASS	END=155747401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	155747402	.	A	.	.	PASS	END=155747423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	155747424	.	G	.	.	PASS	END=155747425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	155747426	.	T	.	.	PASS	END=155747435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	155747436	.	T	.	.	PASS	END=155747439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	155747440	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:44:60
chr1	155747441	.	C	.	.	PASS	END=155747448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	155747449	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:99:60
chr1	155747450	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:54:60
chr1	155747451	.	G	.	.	PASS	END=155747466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	155747467	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:58:60
chr1	155747468	.	T	.	.	PASS	END=155747521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr1	155747522	.	G	.	.	PASS	END=155747590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	155747591	.	T	.	.	PASS	END=155747627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	155747628	.	G	.	.	PASS	END=155747662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	155753726	.	A	.	.	PASS	END=155753822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	155753823	.	A	.	.	PASS	END=155753835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	155753836	.	T	.	.	PASS	END=155753843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:78:60
chr1	155753844	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr1	155753845	.	A	.	.	PASS	END=155753891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	155753892	.	G	.	.	PASS	END=155753922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	155753923	.	T	.	.	PASS	END=155753931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	155754960	.	T	.	.	PASS	END=155754971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	155754972	.	C	.	.	PASS	END=155754977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	155754978	.	C	.	.	PASS	END=155754996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	155754997	.	T	.	.	PASS	END=155755019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	155755020	.	A	.	.	PASS	END=155755032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	155755033	.	C	.	.	PASS	END=155755042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	155755043	.	G	.	.	PASS	END=155755096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	155755097	.	G	A	2869.92	PASS	DP=101;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8832;MQ=60;MQ0=0;QD=28.42;SB=-1556.67	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,101:101:99:2903,217,0:60:99:1.000
chr1	155755098	.	T	.	.	PASS	END=155755185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	155755186	.	A	.	.	PASS	END=155755205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	155755206	.	A	.	.	PASS	END=155755216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	155764790	.	A	.	.	PASS	END=155764791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	155764792	.	A	.	.	PASS	END=155764795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	155764796	.	C	.	.	PASS	END=155764802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	155764803	.	G	.	.	PASS	END=155764807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	155764808	.	C	G	235.80	PASS	BaseQRankSum=0.939;DP=19;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.041;QD=12.41;ReadPosRankSum=1.021;SB=-63.41	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:10,9:19:99:266,0,326:60:99:0.474
chr1	155764809	.	A	.	.	PASS	END=155764817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	155764818	.	A	.	.	PASS	END=155764827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	155764828	.	A	.	.	PASS	END=155764852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	155764853	.	C	.	.	PASS	END=155764896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	155764897	.	T	.	.	PASS	END=155764919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	155764920	.	A	.	.	PASS	END=155764990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:96:60
chr1	155764991	.	T	.	.	PASS	END=155764993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	155774689	.	T	.	.	PASS	END=155774698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	155774699	.	T	.	.	PASS	END=155774738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	155774739	.	C	.	.	PASS	END=155774783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	155774784	.	T	.	.	PASS	END=155774823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	155774824	.	C	.	.	PASS	END=155774854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	155774855	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:70:60
chr1	155774856	.	T	.	.	PASS	END=155774864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	155774865	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:67:60
chr1	155774866	.	C	.	.	PASS	END=155774887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr1	155774888	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:63:60
chr1	155774889	.	A	.	.	PASS	END=155774899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	155774900	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:53:60
chr1	155774901	.	G	.	.	PASS	END=155774926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	155774927	.	C	.	.	PASS	END=155774933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr1	155774934	.	T	.	.	PASS	END=155774943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	155774944	.	A	.	.	PASS	END=155774962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	155774963	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	155774964	.	G	.	.	PASS	END=155774972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	155774973	.	T	.	.	PASS	END=155774981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	155774982	.	T	.	.	LowGQX	END=155774983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr1	155783374	.	A	.	.	PASS	END=155783395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	155783396	.	T	.	.	PASS	END=155783423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	155783424	.	C	.	.	PASS	END=155783522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr1	155783523	.	G	.	.	PASS	END=155783533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	155783534	.	G	.	273.74	PASS	DP=192;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:147:192:99:60:99
chr1	155783535	.	G	.	.	PASS	END=155783563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	155783564	.	T	.	.	PASS	END=155783609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	155783610	.	T	.	.	PASS	END=155783646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	155784070	.	A	.	.	PASS	END=155784098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	155784099	.	C	.	.	PASS	END=155784155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	155784156	.	T	.	.	PASS	END=155784249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	155784250	.	A	.	.	PASS	END=155784291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	155785545	.	A	.	.	PASS	END=155785550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	155785551	.	A	.	.	PASS	END=155785578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:91:61
chr1	155785578	.	CAACT	C	4222.26	PASS	DP=61;FS=0.000;HRun=0;HaplotypeScore=73.6724;MQ=61;MQ0=0;QD=69.22;SB=-1591.95	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,61:61:99:4222,184,0:61:99:1.000
chr1	155785579	.	A	.	.	LowGQX	END=155785582	GT	.
chr1	155785583	.	A	.	.	PASS	END=155785597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	155785598	.	C	.	.	PASS	END=155785703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	155785704	.	A	.	.	PASS	END=155785742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:90:60
chr1	155785952	.	A	.	.	PASS	END=155786032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	155786033	.	A	.	.	PASS	END=155786095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	155786096	.	A	.	.	PASS	END=155786104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	155790282	.	T	.	.	PASS	END=155790355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	155790356	.	A	.	.	PASS	END=155790396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	155790397	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:75:60
chr1	155790398	.	A	.	.	PASS	END=155790431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	155790432	.	G	.	.	PASS	END=155790446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	155790447	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:60:60
chr1	155790448	.	C	.	.	PASS	END=155790498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	155791212	.	T	.	.	PASS	END=155791231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	155791232	.	A	.	.	PASS	END=155791258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	155791259	.	A	.	.	PASS	END=155791360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	155791361	.	C	.	.	PASS	END=155791387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:93:60
chr1	155791388	.	G	.	.	PASS	END=155791390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	155792026	.	T	.	.	LowGQX	END=155792031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	155792032	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	155792033	.	A	.	.	LowGQX	END=155792045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	155792046	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:60
chr1	155792047	.	C	.	.	LowGQX	END=155792049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	155792050	.	T	.	.	LowGQX	END=155792060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	155792061	.	C	.	.	LowGQX	END=155792064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	155792065	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	155792066	.	G	.	.	PASS	END=155792081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	155792082	.	G	.	.	PASS	END=155792102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	155792103	.	C	.	.	PASS	END=155792117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	155792118	.	G	.	.	PASS	END=155792126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	155792127	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:54:60
chr1	155792128	.	A	.	.	PASS	END=155792135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	155792136	.	A	.	.	PASS	END=155792169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	155792170	.	A	.	.	PASS	END=155792267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:88:60
chr1	155792268	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:70:69:60
chr1	155792269	.	T	.	.	PASS	END=155792318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:93:60
chr1	155796577	.	T	.	.	PASS	END=155796593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	155796594	.	G	.	.	PASS	END=155796628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	155796629	.	C	.	.	PASS	END=155796673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	155796674	.	G	.	.	PASS	END=155796795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:88:60
chr1	155796796	.	C	.	.	PASS	END=155796824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	155796825	.	A	.	.	PASS	END=155796840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	155796841	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:54:60
chr1	155796842	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:90:60
chr1	155796843	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:42:60
chr1	155796844	.	C	.	.	PASS	END=155796859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	155796860	.	T	.	.	PASS	END=155796870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	155823016	.	T	.	.	PASS	END=155823043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	155823044	.	C	.	.	PASS	END=155823053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	155823054	.	T	.	.	PASS	END=155823073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	155823074	.	T	.	.	PASS	END=155823098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	155823099	.	C	.	.	PASS	END=155823132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	155823133	.	A	.	.	PASS	END=155823185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	155823186	.	T	.	.	PASS	END=155823336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	155823337	.	T	.	.	PASS	END=155823361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	155823362	.	C	.	.	PASS	END=155823418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	155823419	.	T	.	.	PASS	END=155823451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	155823452	.	C	.	.	PASS	END=155823462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	155823463	.	C	.	.	PASS	END=155823491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	155823492	.	T	.	.	PASS	END=155823498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	155823499	.	T	.	.	PASS	END=155823524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:96:60
chr1	155823525	.	T	.	.	PASS	END=155823531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr1	155823532	.	A	.	.	PASS	END=155823535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr1	155823536	.	T	.	.	PASS	END=155823547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	155823548	.	T	.	.	PASS	END=155823554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	155823555	.	T	.	.	PASS	END=155823557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	155823558	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	155823559	.	T	.	.	PASS	END=155823564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	155823565	.	G	.	.	LowGQX	END=155823580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	155823581	.	C	.	.	LowGQX	END=155823593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	155823594	.	C	.	.	LowGQX	END=155823622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	155829520	.	A	.	.	PASS	END=155829563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	155829564	.	C	.	.	PASS	END=155829619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	155837754	.	A	.	.	PASS	END=155837767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	155837768	.	T	.	.	PASS	END=155837788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	155837789	.	C	.	.	PASS	END=155837864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr1	155837865	.	G	C	8655.05	PASS	DP=300;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=48.5991;MQ=60;MQ0=0;QD=28.85;SB=-4088.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,297:300:99:8655,656,0:60:99:1.000
chr1	155837866	.	A	.	.	PASS	END=155838082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:281:99:60
chr1	155838083	.	A	.	.	PASS	END=155838227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	155838228	.	C	.	.	PASS	END=155838266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	155838267	.	T	C	6961.72	PASS	DP=242;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=20.9354;MQ=60;MQ0=0;QD=28.77;SB=-4076.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,240:242:99:6962,530,0:60:99:1.000
chr1	155838268	.	G	.	.	PASS	END=155838513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	155838514	.	C	.	.	PASS	END=155838536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	155838537	.	A	.	.	PASS	END=155838556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	155838557	.	G	.	.	PASS	END=155838584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	155850289	.	A	.	.	PASS	END=155850323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	155850324	.	C	.	.	PASS	END=155850393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	155850394	.	A	.	.	PASS	END=155850416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	155850987	.	A	.	.	PASS	END=155851012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	155851013	.	A	.	.	PASS	END=155851050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	155851051	.	G	.	.	PASS	END=155851120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	155851121	.	C	.	.	PASS	END=155851185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	155851186	.	A	.	.	PASS	END=155851251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr1	155851252	.	A	.	.	PASS	END=155851291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	155851292	.	A	.	.	PASS	END=155851301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	155870177	.	C	.	.	LowGQX	END=155870411	GT	./.
chr1	155874100	.	A	.	.	LowGQX	END=155874163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155874164	.	G	.	.	LowGQX	END=155874295	GT	./.
chr1	155874509	.	T	.	.	LowGQX	END=155874608	GT	./.
chr1	155880220	.	A	.	.	LowGQX	END=155880319	GT	./.
chr1	155880445	.	A	.	.	LowGQX	END=155880595	GT	./.
chr1	155880623	.	C	.	.	LowGQX	END=155880722	GT	./.
chr1	155883910	.	T	.	.	LowGQX	END=155884094	GT	./.
chr1	155884095	.	C	.	.	LowGQX	END=155884113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155885613	.	T	.	.	LowGQX	END=155885645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155885646	.	C	.	.	LowGQX	.	GT	./.
chr1	155885647	.	A	.	.	LowGQX	END=155885664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155885665	.	A	.	.	LowGQX	.	GT	./.
chr1	155885666	.	T	.	.	LowGQX	END=155885669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155885670	.	T	.	.	LowGQX	END=155885792	GT	./.
chr1	155886414	.	A	.	.	LowGQX	END=155886530	GT	./.
chr1	155887277	.	T	.	.	LowGQX	END=155887465	GT	./.
chr1	155889700	.	C	.	.	LowGQX	END=155889833	GT	./.
chr1	155891164	.	A	.	.	LowGQX	END=155891421	GT	./.
chr1	155891631	.	A	.	.	LowGQX	END=155891730	GT	./.
chr1	155893399	.	T	.	.	LowGQX	END=155893498	GT	./.
chr1	155895421	.	A	.	.	LowGQX	END=155895472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155895473	.	A	.	.	LowGQX	END=155895531	GT	./.
chr1	155895532	.	G	.	.	LowGQX	END=155895560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155895561	.	A	.	.	LowGQX	.	GT	./.
chr1	155895562	.	C	.	.	LowGQX	END=155895636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155895749	.	G	.	.	LowGQX	END=155895847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155895848	.	C	.	.	LowGQX	END=155895877	GT	./.
chr1	155896422	.	T	.	.	LowGQX	END=155896537	GT	./.
chr1	155896538	.	C	.	.	LowGQX	END=155896632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155896872	.	C	.	.	LowGQX	END=155896875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155896876	.	A	.	.	LowGQX	.	GT	./.
chr1	155896877	.	G	.	.	LowGQX	END=155896912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155896913	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	155896914	.	C	.	.	LowGQX	END=155896971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155899077	.	G	.	.	LowGQX	END=155899088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155899089	.	T	.	.	LowGQX	END=155899176	GT	./.
chr1	155899501	.	A	.	.	LowGQX	END=155899633	GT	./.
chr1	155903422	.	A	.	.	LowGQX	END=155903636	GT	./.
chr1	155903637	.	G	.	.	LowGQX	END=155903642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155904096	.	C	.	.	LowGQX	END=155904195	GT	./.
chr1	155911499	.	C	.	.	LowGQX	END=155912296	GT	./.
chr1	155912297	.	C	.	.	LowGQX	END=155912427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155912428	.	T	.	.	LowGQX	END=155912627	GT	./.
chr1	155917120	.	C	.	.	LowGQX	END=155917219	GT	./.
chr1	155917720	.	G	.	.	LowGQX	END=155917819	GT	./.
chr1	155920060	.	C	.	.	LowGQX	END=155920275	GT	./.
chr1	155920618	.	A	.	.	LowGQX	END=155920791	GT	./.
chr1	155920792	.	T	.	.	LowGQX	END=155920891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155920892	.	G	.	.	LowGQX	.	GT	./.
chr1	155920893	.	T	.	.	LowGQX	END=155920904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155920905	.	T	.	.	LowGQX	.	GT	./.
chr1	155920906	.	A	.	.	LowGQX	END=155920926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155920927	.	T	.	.	LowGQX	.	GT	./.
chr1	155920928	.	T	.	.	LowGQX	END=155920931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155920932	.	A	.	.	LowGQX	.	GT	./.
chr1	155920933	.	G	.	.	LowGQX	END=155920942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155920943	.	G	.	.	LowGQX	END=155921059	GT	./.
chr1	155921060	.	C	.	.	LowGQX	END=155921062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155921063	.	C	.	.	LowGQX	.	GT	./.
chr1	155921064	.	C	.	.	LowGQX	END=155921065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155921250	.	C	.	.	LowGQX	END=155921349	GT	./.
chr1	155921500	.	T	.	.	LowGQX	END=155921599	GT	./.
chr1	155921694	.	C	.	.	LowGQX	END=155921793	GT	./.
chr1	155921905	.	A	.	.	LowGQX	END=155922028	GT	./.
chr1	155922417	.	A	.	.	LowGQX	END=155922621	GT	./.
chr1	155924677	.	T	.	.	LowGQX	END=155924776	GT	./.
chr1	155927502	.	A	.	.	LowGQX	END=155927567	GT	./.
chr1	155927568	.	C	.	.	LowGQX	END=155927573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155927574	.	A	.	.	LowGQX	.	GT	./.
chr1	155927575	.	C	.	.	LowGQX	END=155927596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155927597	.	A	.	.	LowGQX	.	GT	./.
chr1	155927598	.	T	.	.	LowGQX	END=155927602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155927603	.	A	.	.	LowGQX	END=155927604	GT	./.
chr1	155927605	.	C	.	.	LowGQX	END=155927626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155927627	.	A	.	.	LowGQX	.	GT	./.
chr1	155927628	.	T	.	.	LowGQX	END=155927635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155927636	.	A	.	.	LowGQX	.	GT	./.
chr1	155927637	.	C	.	.	LowGQX	END=155927643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155927644	.	A	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	155927645	.	T	.	.	LowGQX	END=155927650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155927651	.	A	.	.	LowGQX	.	GT	./.
chr1	155927652	.	G	.	.	LowGQX	END=155927663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155927664	.	A	.	.	LowGQX	.	GT	./.
chr1	155927665	.	A	.	.	LowGQX	END=155927675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155928100	.	G	.	.	LowGQX	END=155928199	GT	./.
chr1	155931450	.	A	.	.	LowGQX	END=155931702	GT	./.
chr1	155931894	.	A	.	.	LowGQX	END=155931972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155931973	.	T	.	.	LowGQX	END=155932015	GT	./.
chr1	155932382	.	A	.	.	LowGQX	END=155932434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155932435	.	C	.	.	LowGQX	.	GT	./.
chr1	155932436	.	T	.	.	LowGQX	END=155932443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155932444	.	C	.	.	LowGQX	.	GT	./.
chr1	155932445	.	T	.	.	LowGQX	END=155932472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155932473	.	A	.	.	LowGQX	END=155932511	GT	./.
chr1	155932722	.	A	.	.	LowGQX	END=155932971	GT	./.
chr1	155932972	.	G	.	.	LowGQX	END=155932975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155932976	.	T	.	.	LowGQX	.	GT	./.
chr1	155934777	.	A	.	.	LowGQX	END=155934922	GT	./.
chr1	155935092	.	A	.	.	LowGQX	END=155935205	GT	./.
chr1	155935370	.	G	.	.	LowGQX	END=155935594	GT	./.
chr1	155936189	.	C	.	.	LowGQX	END=155936194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155936195	.	C	.	.	LowGQX	.	GT	./.
chr1	155936196	.	C	.	.	LowGQX	END=155936218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155936219	.	G	.	.	LowGQX	.	GT	./.
chr1	155936220	.	A	.	.	LowGQX	END=155936231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155936232	.	C	.	.	LowGQX	.	GT	./.
chr1	155936233	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155936234	.	A	.	.	LowGQX	.	GT	./.
chr1	155936235	.	G	.	.	LowGQX	END=155936237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155936238	.	G	.	.	LowGQX	.	GT	./.
chr1	155936239	.	G	.	.	LowGQX	END=155936251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155936252	.	G	.	.	LowGQX	.	GT	./.
chr1	155936253	.	C	.	.	LowGQX	END=155936273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155936274	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	155936275	.	G	.	.	LowGQX	END=155936288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	155936595	.	C	.	.	LowGQX	END=155936600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155936601	.	G	.	.	LowGQX	.	GT	./.
chr1	155936602	.	C	.	.	LowGQX	END=155936603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155936604	.	G	.	.	LowGQX	.	GT	./.
chr1	155936605	.	T	.	.	LowGQX	END=155936607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155936608	.	C	.	.	LowGQX	END=155936609	GT	./.
chr1	155936610	.	C	.	.	LowGQX	END=155936615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155936616	.	G	.	.	LowGQX	.	GT	./.
chr1	155936617	.	C	.	.	LowGQX	END=155936628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155936629	.	A	.	.	LowGQX	.	GT	./.
chr1	155936630	.	C	.	.	LowGQX	END=155936641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155936642	.	G	.	.	LowGQX	END=155936643	GT	./.
chr1	155936644	.	G	.	.	LowGQX	END=155936664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155936665	.	A	.	.	LowGQX	END=155936694	GT	./.
chr1	155938945	.	A	.	.	LowGQX	END=155939091	GT	./.
chr1	155942029	.	C	.	.	LowGQX	END=155942065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	155942066	.	G	.	.	LowGQX	END=155942128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	155948077	.	A	.	.	LowGQX	END=155948294	GT	./.
chr1	155952895	.	T	.	.	LowGQX	END=155952994	GT	./.
chr1	155954155	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155954156	.	T	.	.	LowGQX	END=155954157	GT	./.
chr1	155954158	.	G	.	.	LowGQX	END=155954161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155954162	.	G	.	.	LowGQX	.	GT	./.
chr1	155954163	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155954164	.	T	.	.	LowGQX	.	GT	./.
chr1	155954165	.	T	.	.	LowGQX	END=155954169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155954170	.	G	.	.	LowGQX	END=155954171	GT	./.
chr1	155954172	.	C	.	.	LowGQX	END=155954254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155955105	.	C	.	.	LowGQX	END=155955181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	155955182	.	A	.	.	LowGQX	.	GT	./.
chr1	155955183	.	G	.	.	LowGQX	END=155955192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155955193	.	G	.	.	LowGQX	.	GT	./.
chr1	155955194	.	G	.	.	LowGQX	END=155955198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155955199	.	G	.	.	LowGQX	.	GT	./.
chr1	155955200	.	T	.	.	LowGQX	END=155955204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155979279	.	C	.	.	LowGQX	END=155979443	GT	./.
chr1	155981590	.	A	.	.	LowGQX	END=155981689	GT	./.
chr1	155982289	.	A	.	.	LowGQX	END=155982323	GT	./.
chr1	155982324	.	A	.	.	LowGQX	END=155982388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155984731	.	C	.	.	LowGQX	END=155984862	GT	./.
chr1	155988045	.	A	.	.	LowGQX	END=155988074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155988075	.	C	.	.	LowGQX	END=155988161	GT	./.
chr1	155988993	.	A	.	.	LowGQX	END=155989092	GT	./.
chr1	155989802	.	A	.	.	LowGQX	END=155989807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155989808	.	A	.	.	LowGQX	.	GT	./.
chr1	155989809	.	G	.	.	LowGQX	END=155989819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155989820	.	A	.	.	LowGQX	.	GT	./.
chr1	155989821	.	G	.	.	LowGQX	END=155989822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155989823	.	T	.	.	LowGQX	.	GT	./.
chr1	155989824	.	G	.	.	LowGQX	END=155989828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155989829	.	A	.	.	LowGQX	.	GT	./.
chr1	155989830	.	C	.	.	LowGQX	END=155989831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155989832	.	G	.	.	LowGQX	.	GT	./.
chr1	155989833	.	C	.	.	LowGQX	END=155989855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155989856	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	155989857	.	G	.	.	LowGQX	END=155989960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	155990658	.	G	.	.	LowGQX	END=155990757	GT	./.
chr1	156006767	.	G	.	.	LowGQX	END=156006923	GT	./.
chr1	156011274	.	A	.	.	LowGQX	END=156011464	GT	./.
chr1	156011661	.	A	.	.	LowGQX	END=156011753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156011754	.	T	.	.	LowGQX	END=156011830	GT	./.
chr1	156011936	.	T	.	.	LowGQX	END=156012035	GT	./.
chr1	156012563	.	A	.	.	LowGQX	END=156012706	GT	./.
chr1	156013716	.	G	.	.	LowGQX	END=156013801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156013802	.	A	.	.	LowGQX	END=156013926	GT	./.
chr1	156013927	.	G	.	.	LowGQX	END=156013934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156013935	.	T	.	.	LowGQX	.	GT	./.
chr1	156013936	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156013937	.	T	.	.	LowGQX	.	GT	./.
chr1	156013938	.	C	.	.	LowGQX	END=156013943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156013944	.	T	.	.	LowGQX	.	GT	./.
chr1	156013945	.	C	.	.	LowGQX	END=156013971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156013972	.	T	.	.	LowGQX	.	GT	./.
chr1	156013973	.	G	.	.	LowGQX	END=156013996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156013997	.	G	.	.	LowGQX	.	GT	./.
chr1	156013998	.	A	.	.	LowGQX	END=156014015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156014016	.	T	.	.	LowGQX	.	GT	./.
chr1	156014017	.	G	.	.	LowGQX	END=156014075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156014076	.	C	.	.	LowGQX	END=156014085	GT	./.
chr1	156018290	.	A	.	.	LowGQX	END=156018452	GT	./.
chr1	156020080	.	A	.	.	LowGQX	END=156020305	GT	./.
chr1	156020306	.	G	.	.	LowGQX	END=156020321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156020322	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156020323	.	C	.	.	LowGQX	END=156020326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156020327	.	G	.	.	LowGQX	.	GT	./.
chr1	156020328	.	G	.	.	LowGQX	END=156020338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156020339	.	A	.	.	LowGQX	.	GT	./.
chr1	156020340	.	G	.	.	LowGQX	END=156020343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156020344	.	G	.	.	LowGQX	.	GT	./.
chr1	156020345	.	C	.	.	LowGQX	END=156020346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156020828	.	T	.	.	LowGQX	END=156020872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156020873	.	G	.	.	LowGQX	.	GT	./.
chr1	156020874	.	A	.	.	LowGQX	END=156020885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156020886	.	T	.	.	LowGQX	.	GT	./.
chr1	156020887	.	C	.	.	LowGQX	END=156020897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156020898	.	T	.	.	LowGQX	END=156021187	GT	./.
chr1	156021495	.	A	.	.	LowGQX	END=156021650	GT	./.
chr1	156023383	.	A	.	.	LowGQX	END=156023545	GT	./.
chr1	156024635	.	A	.	.	PASS	END=156024708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	156024709	.	T	.	.	PASS	END=156024743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	156024744	.	A	.	.	PASS	END=156024764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	156025052	.	A	.	.	PASS	END=156025074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	156025075	.	A	.	.	PASS	END=156025202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	156025203	.	T	.	.	PASS	END=156025218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	156027764	.	A	.	.	PASS	END=156027865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	156027866	.	T	.	.	PASS	END=156027870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	156027871	.	C	.	.	PASS	END=156027883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	156028068	.	G	.	.	PASS	END=156028091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	156028092	.	T	.	.	PASS	END=156028124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	156028125	.	A	.	.	PASS	END=156028203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	156031164	.	A	.	.	LowGQX	END=156031263	GT	./.
chr1	156035700	.	A	.	.	LowGQX	END=156035852	GT	./.
chr1	156035853	.	C	.	.	LowGQX	END=156035855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156035856	.	G	.	.	LowGQX	.	GT	./.
chr1	156035857	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156035858	.	A	.	.	LowGQX	END=156035859	GT	./.
chr1	156035860	.	A	.	.	LowGQX	END=156035870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156035871	.	G	.	.	LowGQX	.	GT	./.
chr1	156035872	.	G	.	.	LowGQX	END=156035889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156035890	.	A	.	.	LowGQX	.	GT	./.
chr1	156035891	.	C	.	.	LowGQX	END=156035899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156038059	.	A	.	.	LowGQX	END=156038256	GT	./.
chr1	156039453	.	T	.	.	LowGQX	END=156039459	GT	./.
chr1	156039460	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039461	.	G	.	.	LowGQX	END=156039462	GT	./.
chr1	156039463	.	A	.	.	LowGQX	END=156039464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039465	.	A	.	.	LowGQX	.	GT	./.
chr1	156039466	.	C	.	.	LowGQX	END=156039467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039468	.	A	.	.	LowGQX	.	GT	./.
chr1	156039469	.	T	.	.	LowGQX	END=156039470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039471	.	G	.	.	LowGQX	.	GT	./.
chr1	156039472	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039473	.	C	.	.	LowGQX	.	GT	./.
chr1	156039474	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039475	.	G	.	.	LowGQX	.	GT	./.
chr1	156039476	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039477	.	T	.	.	LowGQX	.	GT	./.
chr1	156039478	.	C	.	.	LowGQX	END=156039486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039487	.	G	.	.	LowGQX	END=156039489	GT	./.
chr1	156039490	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039491	.	T	.	.	LowGQX	.	GT	./.
chr1	156039492	.	C	.	.	LowGQX	END=156039495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039496	.	C	.	.	LowGQX	END=156039497	GT	./.
chr1	156039498	.	T	.	.	LowGQX	END=156039503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039504	.	C	.	.	LowGQX	.	GT	./.
chr1	156039505	.	T	.	.	LowGQX	END=156039509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039510	.	A	.	.	LowGQX	.	GT	./.
chr1	156039511	.	T	.	.	LowGQX	END=156039512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039513	.	T	.	.	LowGQX	.	GT	./.
chr1	156039514	.	T	.	.	LowGQX	END=156039516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039517	.	G	.	.	LowGQX	.	GT	./.
chr1	156039518	.	C	.	.	LowGQX	END=156039527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039528	.	A	.	.	LowGQX	.	GT	./.
chr1	156039529	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039530	.	A	.	.	LowGQX	.	GT	./.
chr1	156039531	.	C	.	.	LowGQX	END=156039534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039535	.	C	.	.	LowGQX	.	GT	./.
chr1	156039536	.	C	.	.	LowGQX	END=156039539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039540	.	A	.	.	LowGQX	END=156039542	GT	./.
chr1	156039543	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039544	.	T	.	.	LowGQX	END=156039545	GT	./.
chr1	156039546	.	A	.	.	LowGQX	END=156039549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039550	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	156039551	.	C	.	.	LowGQX	END=156039552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156039909	.	C	.	.	LowGQX	END=156040014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156040015	.	C	.	.	LowGQX	.	GT	./.
chr1	156040016	.	A	.	.	LowGQX	END=156040017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156040018	.	T	.	.	LowGQX	.	GT	./.
chr1	156040019	.	G	.	.	LowGQX	END=156040025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156040026	.	C	.	.	LowGQX	END=156040035	GT	./.
chr1	156040036	.	G	.	.	LowGQX	END=156040080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156046364	.	C	.	.	LowGQX	END=156047064	GT	./.
chr1	156047065	.	A	.	.	LowGQX	END=156047180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156047181	.	G	.	.	LowGQX	.	GT	./.
chr1	156047182	.	A	.	.	LowGQX	END=156047194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156047195	.	T	.	.	LowGQX	.	GT	./.
chr1	156047196	.	T	.	.	LowGQX	END=156047214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156047215	.	A	.	.	LowGQX	END=156047258	GT	./.
chr1	156047259	.	C	.	.	LowGQX	END=156047268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156047269	.	A	.	.	LowGQX	.	GT	./.
chr1	156047270	.	G	.	.	LowGQX	END=156047293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156047294	.	C	.	.	LowGQX	END=156047295	GT	./.
chr1	156047296	.	C	.	.	LowGQX	END=156047297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156047298	.	T	.	.	LowGQX	.	GT	./.
chr1	156047299	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156047300	.	A	.	.	LowGQX	.	GT	./.
chr1	156047301	.	C	.	.	LowGQX	END=156047415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156047416	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156047417	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156047418	.	C	.	.	LowGQX	.	GT	./.
chr1	156047419	.	A	.	.	LowGQX	END=156047422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156047423	.	G	.	.	LowGQX	.	GT	./.
chr1	156047424	.	T	.	.	LowGQX	END=156047438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156047439	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	156047440	.	T	.	.	LowGQX	END=156047442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156047443	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156047444	.	T	.	.	LowGQX	END=156047448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156047449	.	G	.	.	LowGQX	.	GT	./.
chr1	156047450	.	C	.	.	LowGQX	END=156047469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156047470	.	C	.	.	LowGQX	.	GT	./.
chr1	156047471	.	A	.	.	LowGQX	END=156047473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156051265	.	T	.	.	LowGQX	END=156051794	GT	./.
chr1	156084659	.	C	.	.	PASS	END=156084665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	156084666	.	T	.	.	PASS	END=156084671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	156084672	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	156084673	.	C	.	.	PASS	END=156084688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	156084689	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:60:60
chr1	156084690	.	G	.	.	PASS	END=156084696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:81:60
chr1	156084697	.	C	.	.	PASS	END=156084699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:54:60
chr1	156084700	.	C	.	.	PASS	END=156084721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	156084722	.	T	.	.	PASS	END=156084748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	156084749	.	G	.	.	PASS	END=156084758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	156084759	.	G	.	.	PASS	END=156084778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	156084779	.	A	.	.	PASS	END=156084809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	156084810	.	A	.	.	PASS	END=156084853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	156084854	.	G	.	.	PASS	END=156084924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	156084925	.	C	.	.	PASS	END=156084967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	156084968	.	G	.	.	PASS	END=156084987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	156084988	.	C	.	.	PASS	END=156085003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	156085004	.	C	.	.	PASS	END=156085025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	156085026	.	T	.	.	PASS	END=156085052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	156085053	.	A	.	.	PASS	END=156085057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	156085058	.	A	.	.	PASS	END=156085059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	156085060	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:54:60
chr1	156085061	.	G	.	.	PASS	END=156085063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	156085064	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:3:60
chr1	156085065	.	G	.	.	PASS	END=156085066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	156085067	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:42:60
chr1	156085068	.	G	.	.	PASS	END=156085070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	156085071	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:9:60
chr1	156085072	.	T	.	72.11	PASS	DP=30;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:23:30:42.12:60:42
chr1	156085073	.	C	.	.	PASS	END=156085074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	156085075	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:45:60
chr1	156085076	.	C	.	.	PASS	END=156085077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	156085078	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:57:60
chr1	156085079	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:75:60
chr1	156085080	.	G	.	.	PASS	END=156085081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:33:60
chr1	156085082	.	G	.	.	PASS	END=156085084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	156085085	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:48:60
chr1	156085086	.	G	.	.	PASS	END=156085088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	156085089	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:42:60
chr1	156085090	.	G	.	.	PASS	END=156085092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	156085093	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:48:60
chr1	156085094	.	G	.	.	PASS	END=156085095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:75:60
chr1	156085096	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:27:60
chr1	156085097	.	G	.	.	PASS	END=156085100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	156085101	.	A	.	.	PASS	END=156085102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	156085103	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:36:60
chr1	156085104	.	G	.	.	PASS	END=156085106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	156085107	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:69:60
chr1	156085108	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:42:60
chr1	156085109	.	G	.	.	PASS	END=156085116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	156095895	.	C	.	.	PASS	END=156095910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	156095911	.	G	.	.	PASS	END=156095938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	156095939	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:57:60
chr1	156095940	.	C	.	.	PASS	END=156095963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr1	156095964	.	C	.	.	PASS	END=156096035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	156096036	.	T	.	.	PASS	END=156096049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	156096050	.	C	.	.	PASS	END=156096054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	156096336	.	T	.	.	LowGQX	END=156096375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156096376	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	156096377	.	C	.	.	LowGQX	END=156096378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156096379	.	G	.	.	LowGQX	.	GT	./.
chr1	156096380	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156096381	.	G	.	.	LowGQX	.	GT	./.
chr1	156096382	.	G	.	.	LowGQX	END=156096395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156096396	.	T	.	.	LowGQX	.	GT	./.
chr1	156096397	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156096398	.	T	.	.	LowGQX	.	GT	./.
chr1	156096399	.	C	.	.	LowGQX	END=156096416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156096417	.	T	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	156096418	.	C	.	.	LowGQX	END=156096422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156096423	.	C	.	.	LowGQX	END=156096442	GT	./.
chr1	156096541	.	G	.	.	LowGQX	END=156096578	GT	./.
chr1	156096579	.	C	.	.	LowGQX	END=156096582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156096583	.	A	.	.	LowGQX	.	GT	./.
chr1	156096584	.	G	.	.	LowGQX	END=156096605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156096606	.	C	.	.	LowGQX	.	GT	./.
chr1	156096607	.	T	.	.	LowGQX	END=156096630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156096631	.	C	.	.	LowGQX	.	GT	./.
chr1	156096632	.	A	.	.	LowGQX	END=156096638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156096639	.	A	.	.	LowGQX	.	GT	./.
chr1	156096640	.	G	.	.	LowGQX	END=156096654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156096655	.	T	.	.	LowGQX	.	GT	./.
chr1	156096656	.	G	.	.	LowGQX	END=156096665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156096666	.	C	.	.	LowGQX	.	GT	./.
chr1	156096667	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156096668	.	G	.	.	LowGQX	.	GT	./.
chr1	156096669	.	G	.	.	LowGQX	END=156096677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156096678	.	A	.	.	LowGQX	.	GT	./.
chr1	156096679	.	G	.	.	LowGQX	END=156096680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156096681	.	A	.	.	LowGQX	.	GT	./.
chr1	156096682	.	C	.	.	LowGQX	END=156096685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156096686	.	G	.	.	LowGQX	.	GT	./.
chr1	156096687	.	G	.	.	LowGQX	END=156096689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156096690	.	A	.	.	LowGQX	.	GT	./.
chr1	156096691	.	A	.	.	LowGQX	END=156096707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156099609	.	G	.	.	LowGQX	END=156099708	GT	./.
chr1	156100357	.	C	.	.	PASS	END=156100399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	156100400	.	T	.	.	PASS	END=156100504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	156100505	.	C	.	.	PASS	END=156100542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	156100543	.	T	.	.	PASS	END=156100567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	156100568	.	A	.	.	PASS	END=156100584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	156100585	.	C	.	.	PASS	END=156100607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	156100608	.	A	.	.	PASS	END=156100615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:87:60
chr1	156104143	.	G	.	.	PASS	END=156104182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:93:60
chr1	156104183	.	C	.	.	PASS	END=156104202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	156104203	.	G	.	.	PASS	END=156104327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	156104328	.	T	.	.	PASS	END=156104353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	156104354	.	G	.	.	PASS	END=156104370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:60
chr1	156104545	.	C	.	.	PASS	END=156104556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	156104557	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:54:60
chr1	156104558	.	T	.	.	PASS	END=156104587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	156104588	.	C	.	.	PASS	END=156104723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	156104724	.	G	.	.	PASS	END=156104738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	156104739	.	G	.	.	PASS	END=156104761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	156104762	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:57:60
chr1	156104763	.	C	.	.	PASS	END=156104787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr1	156104788	.	C	.	.	PASS	END=156104817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	156104927	.	C	.	.	PASS	END=156104933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	156104934	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:69:60
chr1	156104935	.	C	.	.	PASS	END=156104954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	156104955	.	T	.	.	PASS	END=156104984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	156104985	.	A	.	.	PASS	END=156105027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	156105028	.	T	C	806.76	PASS	BaseQRankSum=-1.164;DP=99;Dels=0.00;FS=2.856;HRun=1;HaplotypeScore=12.3099;MQ=60;MQ0=0;MQRankSum=-0.152;QD=8.15;ReadPosRankSum=-0.854;SB=-393.38	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:59,38:99:99:837,0,1374:60:99:0.392
chr1	156105029	.	G	.	.	PASS	END=156105083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	156105084	.	T	.	.	PASS	END=156105100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	156105101	.	C	.	.	PASS	END=156105124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr1	156105125	.	C	.	.	PASS	END=156105126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:72:60
chr1	156105127	.	C	.	.	PASS	END=156105138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	156105139	.	A	.	.	PASS	END=156105141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	156105142	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:90:60
chr1	156105143	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:39:59
chr1	156105144	.	C	.	.	PASS	END=156105151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:59
chr1	156105152	.	G	.	.	PASS	END=156105154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:59
chr1	156105641	.	C	.	.	PASS	END=156105661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:59
chr1	156105662	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:69:59
chr1	156105663	.	G	.	.	PASS	END=156105666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:59
chr1	156105667	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:45:59
chr1	156105668	.	C	.	.	PASS	END=156105669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:59
chr1	156105670	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:59
chr1	156105671	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:33:59
chr1	156105672	.	A	.	45.04	LowGQX	DP=28;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:19:28:15.04:59:15
chr1	156105673	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:36:59
chr1	156105674	.	C	.	.	PASS	END=156105675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:59
chr1	156105676	.	T	.	39.01	LowGQX	DP=24;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:12:24:9.02:60:9
chr1	156105677	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:24:60
chr1	156105678	.	C	.	.	PASS	END=156105679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	156105680	.	A	C	122.69	SB	BaseQRankSum=-1.115;DP=25;Dels=0.00;FS=13.222;HRun=6;HaplotypeScore=35.0785;MQ=60;MQ0=0;MQRankSum=-0.027;QD=4.91;ReadPosRankSum=-0.734;SB=0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,12:25:99:153,0,124:60:99:0.480
chr1	156105681	.	C	.	.	PASS	END=156105683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	156105684	.	C	.	.	PASS	END=156105686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	156105687	.	T	.	51.06	LowGQX	DP=21;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:11:21:21.06:60:21
chr1	156105688	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:36:60
chr1	156105689	.	C	.	.	LowGQX	END=156105690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:24:60
chr1	156105691	.	G	.	.	PASS	END=156105694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chr1	156105695	.	G	.	.	PASS	END=156105696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	156105697	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:60
chr1	156105698	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:1:60
chr1	156105699	.	C	.	.	PASS	END=156105700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	156105701	.	A	.	.	PASS	END=156105703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	156105704	.	G	.	.	PASS	END=156105705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	156105706	.	G	.	.	PASS	END=156105707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	156105708	.	C	.	.	PASS	END=156105712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	156105713	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:12:60
chr1	156105714	.	T	.	.	PASS	END=156105718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	156105719	.	G	.	.	PASS	END=156105720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	156105721	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:55:60
chr1	156105722	.	C	.	.	PASS	END=156105734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	156105735	.	T	.	.	PASS	END=156105754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	156105755	.	A	.	.	PASS	END=156105808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	156105809	.	A	.	.	PASS	END=156105871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	156105872	.	A	.	.	PASS	END=156105927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	156105928	.	G	A	732.76	PASS	BaseQRankSum=-0.117;DP=68;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=10.4586;MQ=60;MQ0=0;MQRankSum=-0.920;QD=10.78;ReadPosRankSum=-0.266;SB=-358.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,30:68:99:763,0,1065:60:99:0.441
chr1	156105929	.	T	.	.	PASS	END=156106003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	156106004	.	G	.	.	PASS	END=156106039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	156106040	.	G	.	.	PASS	END=156106154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	156106155	.	T	.	.	PASS	END=156106177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	156106178	.	A	.	.	PASS	END=156106184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	156106185	.	T	C	1114.11	PASS	BaseQRankSum=0.314;DP=72;Dels=0.00;FS=2.309;HRun=0;HaplotypeScore=4.7873;MQ=60;MQ0=0;MQRankSum=0.361;QD=15.47;ReadPosRankSum=1.546;SB=-390.65	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:27,44:72:99:1144,0,665:60:99:0.620
chr1	156106186	.	G	.	.	PASS	END=156106228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	156106229	.	T	.	.	PASS	END=156106241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	156106242	.	A	.	.	PASS	END=156106253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	156106254	.	G	.	.	PASS	END=156106269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	156106270	.	G	.	.	PASS	END=156106277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	156106278	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr1	156106279	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:51:60
chr1	156106661	.	A	.	.	PASS	END=156106677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	156106678	.	T	.	.	PASS	END=156106706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:86:60
chr1	156106707	.	G	.	.	PASS	END=156106723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	156106724	.	G	.	.	PASS	END=156106862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	156106863	.	C	T	730.92	PASS	BaseQRankSum=-0.570;DP=106;Dels=0.00;FS=3.030;HRun=0;HaplotypeScore=14.2038;MQ=60;MQ0=0;MQRankSum=-0.550;QD=6.90;ReadPosRankSum=0.709;SB=-327.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:69,37:106:99:761,0,1612:60:99:0.349
chr1	156106864	.	G	.	.	PASS	END=156106927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	156106928	.	A	.	.	PASS	END=156107001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	156107002	.	T	.	.	PASS	END=156107034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	156107035	.	T	.	.	PASS	END=156107054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	156107055	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:51:60
chr1	156107056	.	C	.	.	PASS	END=156107074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	156107394	.	A	.	.	PASS	END=156107414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	156107415	.	C	.	.	PASS	END=156107455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	156107456	.	G	.	.	PASS	END=156107531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	156107532	.	C	.	.	PASS	END=156107533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	156107534	.	C	T	835.13	PASS	BaseQRankSum=-0.530;DP=72;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.9466;MQ=60;MQ0=0;MQRankSum=1.329;QD=11.60;ReadPosRankSum=-1.082;SB=-516.99	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:37,35:72:99:865,0,1046:60:99:0.486
chr1	156107535	.	G	.	.	PASS	END=156107569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	156107570	.	T	.	.	PASS	END=156107606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:60
chr1	156108228	.	G	.	.	LowGQX	END=156108234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	156108235	.	G	.	.	PASS	END=156108248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	156108249	.	G	.	.	PASS	END=156108254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	156108255	.	C	.	.	LowGQX	END=156108257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:3:60
chr1	156108258	.	G	.	.	PASS	END=156108286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	156108287	.	C	.	.	PASS	END=156108295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	156108296	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:15:60
chr1	156108297	.	T	.	.	PASS	END=156108303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	156108304	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:60
chr1	156108305	.	C	.	.	PASS	END=156108308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	156108309	.	G	.	.	PASS	END=156108320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	156108321	.	C	.	.	PASS	END=156108325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	156108326	.	C	.	.	PASS	END=156108335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:93:60
chr1	156108336	.	G	.	.	PASS	END=156108377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	156108378	.	G	.	.	PASS	END=156108471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	156108472	.	G	.	.	PASS	END=156108475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:84:60
chr1	156108476	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:75:60
chr1	156108477	.	G	.	.	PASS	END=156108481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	156108482	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:75:60
chr1	156108483	.	G	.	.	PASS	END=156108485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	156108486	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:50:60
chr1	156108487	.	G	.	.	PASS	END=156108488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	156108489	.	T	.	.	PASS	END=156108490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:69:60
chr1	156108491	.	C	.	.	PASS	END=156108504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	156108505	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:60
chr1	156108506	.	C	.	.	PASS	END=156108509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	156108510	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:54:60
chr1	156108511	.	G	.	.	PASS	END=156108527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	156108528	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:72:60
chr1	156108529	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:35:60
chr1	156108530	.	C	.	.	PASS	END=156108533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	156108534	.	A	.	.	PASS	END=156108538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	156108539	.	C	.	.	PASS	END=156108545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	156108546	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:12:60
chr1	156108547	.	A	.	.	PASS	END=156108551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	156108552	.	A	.	.	PASS	END=156108562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	156108563	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:9:60
chr1	156108564	.	T	.	.	PASS	END=156108567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	156108568	.	T	.	.	PASS	END=156108576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	156108577	.	C	.	.	PASS	END=156108585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	156108586	.	G	.	.	PASS	END=156108588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	156108589	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:60
chr1	156108590	.	C	.	.	PASS	END=156108591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	156108592	.	C	.	.	PASS	END=156108598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	156108599	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	156108820	.	C	.	.	PASS	END=156108913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	156108914	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:96:99:60
chr1	156108915	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:96:60:60
chr1	156108916	.	G	.	.	PASS	END=156108942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	156108943	.	C	.	.	PASS	END=156108948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	156109486	.	A	C	10.97	LowGQX;LowQD;SB	BaseQRankSum=-0.690;DP=18;Dels=0.00;FS=7.782;HRun=4;HaplotypeScore=9.5196;MQ=59;MQ0=0;MQRankSum=-0.159;QD=0.61;ReadPosRankSum=-0.053;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:14,4:18:40.60:41,0,218:59:11:0.222
chr1	156109487	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:48:59
chr1	156109488	.	C	.	.	PASS	END=156109490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:59
chr1	156109491	.	T	.	.	PASS	END=156109492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:59
chr1	156109493	.	C	.	.	PASS	END=156109497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:59
chr1	156109498	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:16:60
chr1	156109499	.	G	.	.	PASS	END=156109501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	156109502	.	C	.	.	PASS	END=156109509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	156109510	.	A	.	.	PASS	END=156109520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	156109521	.	C	.	.	PASS	END=156109543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	156109544	.	T	.	.	PASS	END=156109576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	156109577	.	A	.	.	PASS	END=156109644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:96:60
chr1	156109645	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:99:60
chr1	156124319	.	G	.	.	PASS	END=156124323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	156124324	.	G	.	.	PASS	END=156124331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	156124332	.	T	.	.	PASS	END=156124336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	156124337	.	C	.	.	PASS	END=156124340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	156124341	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr1	156124342	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:60:60
chr1	156124343	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:23:60
chr1	156124344	.	T	.	.	PASS	END=156124355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	156124356	.	G	.	.	PASS	END=156124381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	156124382	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:90:60
chr1	156124383	.	C	.	.	PASS	END=156124387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:69:60
chr1	156124388	.	G	.	.	PASS	END=156124434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	156124435	.	T	.	.	PASS	END=156124445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:75:60
chr1	156124446	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:66:60
chr1	156124447	.	G	.	.	PASS	END=156124453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:72:60
chr1	156124454	.	A	.	.	PASS	END=156124460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:66:60
chr1	156124461	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:47:60
chr1	156124462	.	G	.	.	PASS	END=156124466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:69:60
chr1	156124467	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:33:60
chr1	156124468	.	A	.	.	PASS	END=156124474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	156124475	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:45:60
chr1	156124476	.	A	.	.	PASS	END=156124491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	156124492	.	G	.	.	PASS	END=156124511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	156124512	.	A	.	.	PASS	END=156124537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	156124538	.	A	.	.	PASS	END=156124549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	156124550	.	A	.	.	PASS	END=156124559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	156126154	.	C	.	.	PASS	END=156126163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	156126164	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:75:60
chr1	156126165	.	C	.	.	PASS	END=156126184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	156126185	.	C	.	.	PASS	END=156126204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	156126205	.	G	.	.	PASS	END=156126229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	156126230	.	C	.	.	PASS	END=156126265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	156126266	.	G	.	.	PASS	END=156126334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	156126335	.	G	.	.	PASS	END=156126356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	156126357	.	A	.	.	PASS	END=156126379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	156126380	.	G	.	.	PASS	END=156126381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	156126382	.	T	.	.	PASS	END=156126388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	156126389	.	T	.	.	PASS	END=156126401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	156126402	.	T	.	.	PASS	END=156126412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	156126413	.	C	.	.	PASS	END=156126416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	156127810	.	A	.	.	PASS	END=156127830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	156127831	.	C	.	.	PASS	END=156127953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	156127954	.	T	.	.	PASS	END=156127974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	156128128	.	C	.	.	PASS	END=156128173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	156128174	.	C	.	.	PASS	END=156128237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	156128238	.	C	.	.	PASS	END=156128261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	156128262	.	T	.	.	PASS	END=156128283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	156128284	.	T	.	.	PASS	END=156128321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	156128322	.	C	.	.	PASS	END=156128328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	156128459	.	C	.	.	PASS	END=156128478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	156128479	.	T	.	.	PASS	END=156128532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	156128533	.	G	.	.	PASS	END=156128587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	156128588	.	G	.	.	PASS	END=156128666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	156130183	.	A	.	.	PASS	END=156130214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	156130215	.	C	.	.	PASS	END=156130233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	156130234	.	A	.	.	PASS	END=156130312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	156130313	.	T	.	.	PASS	END=156130368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	156130369	.	C	.	.	PASS	END=156130388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	156130389	.	C	.	.	PASS	END=156130401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	156130645	.	C	.	.	PASS	END=156130666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr1	156130667	.	C	.	.	PASS	END=156130787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	156130788	.	C	.	.	PASS	END=156130795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	156130796	.	A	.	.	PASS	END=156130803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	156130804	.	T	.	.	PASS	END=156130812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	156130813	.	T	.	.	PASS	END=156130819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	156130820	.	G	.	.	PASS	END=156130826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	156130827	.	G	.	.	PASS	END=156130834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	156130835	.	C	.	.	PASS	END=156130836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	156130837	.	G	.	.	LowGQX	END=156130838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:60
chr1	156130839	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr1	156130840	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	156130841	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr1	156130842	.	C	.	.	LowGQX	END=156130843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	156130844	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	156130845	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:9:60
chr1	156130846	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	156130847	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:54:60
chr1	156130848	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chr1	156130849	.	A	.	.	PASS	END=156130854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	156130855	.	A	.	.	PASS	END=156130856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr1	156130857	.	G	.	.	PASS	END=156130861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	156130862	.	C	.	.	PASS	END=156130870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	156130871	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:51:60
chr1	156131086	.	C	.	.	PASS	END=156131101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:58
chr1	156131102	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	156131103	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	156131104	.	C	.	16.44	LowGQX	DP=7;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:7:0.18:60:0
chr1	156131105	.	G	.	.	PASS	END=156131106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	156131107	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	156131108	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:21:60
chr1	156131109	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	156131110	.	G	.	12.18	LowGQX	DP=17;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:13:17:0.07:60:0
chr1	156131111	.	C	.	.	PASS	END=156131115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	156131116	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:42:60
chr1	156131117	.	G	.	.	PASS	END=156131120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	156131121	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:51:60
chr1	156131122	.	C	.	.	PASS	END=156131136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	156131137	.	A	.	.	PASS	END=156131160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	156131161	.	C	.	.	PASS	END=156131276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	156131277	.	T	.	.	PASS	END=156131360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	156132684	.	G	.	.	PASS	END=156132706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	156132707	.	A	.	.	PASS	END=156132727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	156132728	.	T	.	.	PASS	END=156132755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	156132756	.	C	.	.	PASS	END=156132795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	156132796	.	G	.	.	PASS	END=156132855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	156132856	.	G	.	.	PASS	END=156132891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	156132892	.	A	.	.	PASS	END=156132905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	156132906	.	T	.	.	PASS	END=156132917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	156132918	.	A	.	.	PASS	END=156132922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:84:60
chr1	156132923	.	T	.	.	PASS	END=156132928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	156132929	.	A	.	.	PASS	END=156132934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	156132935	.	A	.	.	PASS	END=156132936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	156142566	.	G	.	.	PASS	END=156142581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	156142582	.	G	.	.	PASS	END=156142609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:93:60
chr1	156142610	.	C	.	.	PASS	END=156142645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	156142646	.	C	.	.	PASS	END=156142731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	156142732	.	G	.	.	PASS	END=156142757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	156142758	.	C	.	.	PASS	END=156142778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	156142779	.	G	.	.	PASS	END=156142795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	156142796	.	C	.	.	PASS	END=156142810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	156142811	.	T	.	.	PASS	END=156142819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	156142820	.	T	.	.	PASS	END=156142823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	156142824	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:12:60
chr1	156142825	.	C	.	.	PASS	END=156142835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	156142836	.	A	.	.	PASS	END=156142843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	156142844	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	156142845	.	T	.	.	LowGQX	END=156142846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	156142847	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	156142848	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	156144562	.	G	.	.	PASS	END=156144594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	156144595	.	C	.	.	PASS	END=156144625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	156144626	.	C	.	.	PASS	END=156144646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	156144647	.	G	.	.	PASS	END=156144782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	156144826	.	A	.	.	PASS	END=156144902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	156144903	.	A	.	.	PASS	END=156145033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	156145034	.	T	.	.	PASS	END=156145056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	156145057	.	G	.	.	PASS	END=156145085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	156145296	.	C	.	.	PASS	END=156145339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	156145340	.	C	.	.	PASS	END=156145379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	156145380	.	C	.	.	PASS	END=156145409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	156145410	.	G	.	.	PASS	END=156145460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:93:60
chr1	156145461	.	C	.	.	PASS	END=156145473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	156145474	.	A	.	.	PASS	END=156145482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	156145483	.	G	.	.	PASS	END=156145491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	156145492	.	A	.	.	PASS	END=156145498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	156146145	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:58
chr1	156146146	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:58
chr1	156146147	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:58
chr1	156146148	.	A	.	.	PASS	END=156146150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:59
chr1	156146151	.	C	.	.	LowGQX	END=156146152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:59
chr1	156146153	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:59
chr1	156146154	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:0:59
chr1	156146155	.	A	.	.	LowGQX	END=156146158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:59
chr1	156146159	.	C	.	57.08	LowGQX	DP=13;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:10:13:27.09:59:27
chr1	156146160	.	T	.	.	PASS	END=156146164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:59
chr1	156146165	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:59
chr1	156146166	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:39:59
chr1	156146167	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:59
chr1	156146168	.	C	.	.	PASS	END=156146170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:59
chr1	156146171	.	T	.	.	PASS	END=156146173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:59
chr1	156146174	.	T	.	.	PASS	END=156146177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:59
chr1	156146178	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	156146179	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	156146180	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	156146181	.	T	.	.	PASS	END=156146191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	156146192	.	A	.	.	PASS	END=156146202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	156146203	.	A	.	.	PASS	END=156146212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	156146213	.	G	.	.	PASS	END=156146216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	156146217	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:75:60
chr1	156146218	.	C	.	.	PASS	END=156146220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	156146221	.	C	.	.	PASS	END=156146223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	156146224	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:36:60
chr1	156146225	.	A	.	.	PASS	END=156146226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:63:60
chr1	156146227	.	C	.	.	PASS	END=156146237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	156146238	.	C	.	.	PASS	END=156146241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	156146242	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:72:60
chr1	156146243	.	C	.	.	PASS	END=156146264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:78:60
chr1	156146265	.	C	.	.	PASS	END=156146302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	156146303	.	G	.	.	PASS	END=156146314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	156146315	.	G	.	.	PASS	END=156146351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	156146352	.	G	.	.	PASS	END=156146573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	156146574	.	T	.	.	PASS	END=156146629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	156146630	.	C	.	.	PASS	END=156146770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:262:99:60
chr1	156146771	.	G	.	.	PASS	END=156146798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	156146799	.	C	.	.	PASS	END=156146814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	156146815	.	T	.	.	PASS	END=156146824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	156146825	.	T	C	1788.87	PASS	BaseQRankSum=0.528;DP=133;Dels=0.00;FS=1.009;HRun=2;HaplotypeScore=13.4141;MQ=60;MQ0=0;MQRankSum=0.073;QD=13.45;ReadPosRankSum=-1.358;SB=-233.53	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:63,69:133:99:1819,0,1526:60:99:0.523
chr1	156146826	.	G	.	.	PASS	END=156146839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	156169637	.	C	.	.	LowGQX	END=156170265	GT	./.
chr1	156177653	.	C	.	.	LowGQX	END=156177806	GT	./.
chr1	156180029	.	A	.	.	LowGQX	END=156180087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	156180088	.	C	.	.	LowGQX	END=156180120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	156180121	.	A	.	36	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.01:60:6
chr1	156180122	.	T	.	.	LowGQX	END=156180125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	156180126	.	C	.	.	LowGQX	END=156180127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	156180128	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	156180129	.	A	.	.	LowGQX	END=156180138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	156180139	.	T	.	.	LowGQX	END=156180146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	156180147	.	T	.	.	LowGQX	END=156180184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156180185	.	G	.	.	LowGQX	END=156180224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	156182805	.	A	.	.	LowGQX	END=156182969	GT	./.
chr1	156195347	.	G	.	.	LowGQX	END=156195459	GT	./.
chr1	156202109	.	A	.	.	LowGQX	END=156202218	GT	./.
chr1	156203417	.	A	.	.	LowGQX	END=156203443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156203444	.	A	.	.	LowGQX	.	GT	./.
chr1	156203445	.	G	.	.	LowGQX	END=156203464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156203465	.	T	.	.	LowGQX	END=156203466	GT	./.
chr1	156203467	.	A	.	.	LowGQX	END=156203471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156203472	.	C	.	.	LowGQX	END=156203473	GT	./.
chr1	156203474	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156203475	.	G	.	.	LowGQX	.	GT	./.
chr1	156203476	.	G	.	.	LowGQX	END=156203477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156203478	.	T	.	.	LowGQX	.	GT	./.
chr1	156203479	.	A	.	.	LowGQX	END=156203484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156203485	.	G	.	.	LowGQX	.	GT	./.
chr1	156203486	.	T	.	.	LowGQX	END=156203489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156203490	.	A	.	.	LowGQX	.	GT	./.
chr1	156203491	.	G	.	.	LowGQX	END=156203493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156203494	.	G	.	.	LowGQX	.	GT	./.
chr1	156203495	.	G	.	.	LowGQX	END=156203499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156203500	.	G	.	.	LowGQX	.	GT	./.
chr1	156203501	.	T	.	.	LowGQX	END=156203502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156203503	.	C	.	.	LowGQX	.	GT	./.
chr1	156203504	.	G	.	.	LowGQX	END=156203509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156203510	.	A	.	.	LowGQX	.	GT	./.
chr1	156203511	.	G	.	.	LowGQX	END=156203515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156203516	.	C	.	.	LowGQX	.	GT	./.
chr1	156203517	.	C	.	.	LowGQX	END=156203518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156203519	.	G	.	.	LowGQX	.	GT	./.
chr1	156203520	.	G	.	.	LowGQX	END=156203521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156206077	.	A	.	.	LowGQX	END=156206151	GT	./.
chr1	156206152	.	C	.	.	LowGQX	END=156206162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156206163	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156206164	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	156206165	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156206166	.	G	.	.	LowGQX	END=156206171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156206172	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156206173	.	C	.	.	LowGQX	END=156206176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	156206177	.	A	.	.	LowGQX	.	GT	./.
chr1	156206178	.	G	.	.	LowGQX	END=156206182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	156206183	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156206184	.	G	.	.	LowGQX	END=156206206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156206207	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156206208	.	C	.	.	LowGQX	END=156206260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156206261	.	A	G	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	156206262	.	G	.	.	LowGQX	END=156206268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156206269	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156206270	.	G	.	.	LowGQX	END=156206276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156209316	.	C	.	.	LowGQX	END=156209415	GT	./.
chr1	156212005	.	C	.	.	LowGQX	END=156212104	GT	./.
chr1	156212314	.	G	.	.	LowGQX	END=156212331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156212332	.	T	.	.	LowGQX	.	GT	./.
chr1	156212333	.	T	.	.	LowGQX	END=156212359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156212360	.	T	.	.	LowGQX	.	GT	./.
chr1	156212361	.	G	.	.	LowGQX	END=156212364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	156212365	.	A	.	.	LowGQX	.	GT	./.
chr1	156212366	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156212367	.	T	.	.	LowGQX	.	GT	./.
chr1	156212368	.	C	.	.	LowGQX	END=156212372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156212373	.	A	.	.	LowGQX	.	GT	./.
chr1	156212374	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156212375	.	A	.	.	LowGQX	.	GT	./.
chr1	156212376	.	G	.	.	LowGQX	END=156212377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156212378	.	T	.	.	LowGQX	END=156212379	GT	./.
chr1	156212380	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156212381	.	A	.	.	LowGQX	.	GT	./.
chr1	156212382	.	G	.	.	LowGQX	END=156212383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156212384	.	T	.	.	LowGQX	.	GT	./.
chr1	156212385	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156212386	.	T	.	.	LowGQX	.	GT	./.
chr1	156212387	.	G	.	.	LowGQX	END=156212391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156212392	.	T	.	.	LowGQX	END=156212393	GT	./.
chr1	156212394	.	G	.	.	LowGQX	END=156212396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156212397	.	C	.	.	LowGQX	END=156212398	GT	./.
chr1	156212399	.	G	.	.	LowGQX	END=156212400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156212401	.	T	.	.	LowGQX	END=156212403	GT	./.
chr1	156212404	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156212405	.	T	.	.	LowGQX	.	GT	./.
chr1	156212406	.	T	.	.	LowGQX	END=156212408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156212409	.	T	.	.	LowGQX	.	GT	./.
chr1	156212410	.	G	.	.	LowGQX	END=156212411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156212412	.	A	.	.	LowGQX	.	GT	./.
chr1	156212413	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156212538	.	C	.	.	LowGQX	END=156212637	GT	./.
chr1	156212822	.	A	.	.	LowGQX	END=156212955	GT	./.
chr1	156213650	.	C	.	.	LowGQX	END=156213680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156213681	.	T	.	.	LowGQX	.	GT	./.
chr1	156213682	.	C	.	.	LowGQX	END=156213698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156213699	.	T	.	.	LowGQX	END=156213700	GT	./.
chr1	156213701	.	C	.	.	LowGQX	END=156213721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156213722	.	T	.	.	LowGQX	.	GT	./.
chr1	156213723	.	C	.	.	LowGQX	END=156213771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156213772	.	T	.	.	LowGQX	END=156214196	GT	./.
chr1	156214479	.	A	.	.	LowGQX	END=156214547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156214548	.	T	.	.	LowGQX	.	GT	./.
chr1	156214549	.	C	.	.	LowGQX	END=156214558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156214559	.	A	.	.	LowGQX	.	GT	./.
chr1	156214560	.	T	.	.	LowGQX	END=156214576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156214577	.	C	.	.	LowGQX	.	GT	./.
chr1	156214578	.	A	.	.	LowGQX	END=156214614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156214615	.	T	.	.	LowGQX	.	GT	./.
chr1	156214616	.	G	.	.	LowGQX	END=156214650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156214651	.	T	.	.	LowGQX	.	GT	./.
chr1	156214652	.	G	.	.	LowGQX	END=156214694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156214695	.	A	.	.	LowGQX	END=156214704	GT	./.
chr1	156214931	.	A	.	.	LowGQX	END=156214984	GT	./.
chr1	156214985	.	G	.	.	LowGQX	END=156215004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156215005	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	156215006	.	C	.	.	LowGQX	END=156215031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156215324	.	A	.	.	LowGQX	END=156215332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156215333	.	A	.	.	LowGQX	.	GT	./.
chr1	156215334	.	G	.	.	LowGQX	END=156215340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156215341	.	A	.	.	LowGQX	.	GT	./.
chr1	156215342	.	G	.	.	LowGQX	END=156215350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156215351	.	A	.	.	LowGQX	END=156215352	GT	./.
chr1	156215353	.	A	.	.	LowGQX	END=156215385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156215386	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156215387	.	A	.	.	LowGQX	END=156215454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156215571	.	A	.	.	LowGQX	END=156216043	GT	./.
chr1	156216448	.	G	.	.	LowGQX	END=156216507	GT	./.
chr1	156216508	.	C	.	.	LowGQX	END=156216547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156217748	.	C	.	.	LowGQX	END=156217847	GT	./.
chr1	156219528	.	C	.	.	LowGQX	END=156219531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156219532	.	G	.	.	LowGQX	.	GT	./.
chr1	156219533	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156219534	.	C	.	.	LowGQX	END=156219745	GT	./.
chr1	156220370	.	G	.	.	LowGQX	END=156220469	GT	./.
chr1	156220647	.	A	.	.	LowGQX	END=156220723	GT	./.
chr1	156220724	.	C	.	.	LowGQX	END=156220729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156220730	.	A	.	.	LowGQX	.	GT	./.
chr1	156220731	.	C	.	.	LowGQX	END=156220733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156220734	.	G	.	.	LowGQX	.	GT	./.
chr1	156220735	.	C	.	.	LowGQX	END=156220737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156220738	.	C	.	.	LowGQX	END=156220739	GT	./.
chr1	156220740	.	T	.	.	LowGQX	END=156220747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156220748	.	A	.	.	LowGQX	.	GT	./.
chr1	156220749	.	G	.	.	LowGQX	END=156220754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156220755	.	T	.	.	LowGQX	.	GT	./.
chr1	156220756	.	G	.	.	LowGQX	END=156220757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156220758	.	T	.	.	LowGQX	.	GT	./.
chr1	156220759	.	T	.	.	LowGQX	END=156220760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156220761	.	C	.	.	LowGQX	END=156220765	GT	./.
chr1	156220766	.	G	.	.	LowGQX	END=156220769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156220770	.	A	.	.	LowGQX	END=156220771	GT	./.
chr1	156220772	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156220773	.	A	.	.	LowGQX	.	GT	./.
chr1	156220774	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156220775	.	C	.	.	LowGQX	END=156220778	GT	./.
chr1	156220779	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156220780	.	A	.	.	LowGQX	.	GT	./.
chr1	156220781	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156220782	.	A	.	.	LowGQX	.	GT	./.
chr1	156220783	.	G	.	.	LowGQX	END=156220785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156220786	.	T	.	.	LowGQX	.	GT	./.
chr1	156220787	.	C	.	.	LowGQX	END=156220789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156221182	.	C	.	.	LowGQX	END=156221281	GT	./.
chr1	156222201	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222202	.	C	.	.	LowGQX	END=156222203	GT	./.
chr1	156222204	.	C	.	.	LowGQX	END=156222205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222206	.	T	.	.	LowGQX	.	GT	./.
chr1	156222207	.	G	.	.	LowGQX	END=156222208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222209	.	T	.	.	LowGQX	.	GT	./.
chr1	156222210	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222211	.	C	.	.	LowGQX	.	GT	./.
chr1	156222212	.	C	.	.	LowGQX	END=156222213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222214	.	T	.	.	LowGQX	.	GT	./.
chr1	156222215	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222216	.	T	.	.	LowGQX	END=156222217	GT	./.
chr1	156222218	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222219	.	A	.	.	LowGQX	END=156222221	GT	./.
chr1	156222222	.	C	.	.	LowGQX	END=156222223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222224	.	C	.	.	LowGQX	END=156222225	GT	./.
chr1	156222226	.	G	.	.	LowGQX	END=156222227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222228	.	C	.	.	LowGQX	.	GT	./.
chr1	156222229	.	T	.	.	LowGQX	END=156222232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222233	.	G	.	.	LowGQX	.	GT	./.
chr1	156222234	.	G	.	.	LowGQX	END=156222235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222236	.	A	.	.	LowGQX	END=156222237	GT	./.
chr1	156222238	.	C	.	.	LowGQX	END=156222243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156222244	.	C	.	.	LowGQX	.	GT	./.
chr1	156222245	.	C	.	.	LowGQX	END=156222247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156222248	.	C	.	.	LowGQX	END=156222249	GT	./.
chr1	156222250	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156222251	.	G	.	.	LowGQX	.	GT	./.
chr1	156222252	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156222253	.	G	.	.	LowGQX	.	GT	./.
chr1	156222254	.	C	.	.	LowGQX	END=156222255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156222256	.	C	.	.	LowGQX	END=156222257	GT	./.
chr1	156222258	.	T	.	.	LowGQX	END=156222259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156222260	.	G	.	.	LowGQX	.	GT	./.
chr1	156222261	.	G	.	.	LowGQX	END=156222262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156222263	.	G	.	.	LowGQX	END=156222264	GT	./.
chr1	156222265	.	T	.	.	LowGQX	END=156222272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156222273	.	C	.	.	LowGQX	.	GT	./.
chr1	156222274	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156222275	.	G	.	.	LowGQX	.	GT	./.
chr1	156222276	.	C	.	.	LowGQX	END=156222277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156222278	.	A	.	.	LowGQX	END=156222279	GT	./.
chr1	156222280	.	T	.	.	LowGQX	END=156222284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156222285	.	G	.	.	LowGQX	END=156222286	GT	./.
chr1	156222287	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222288	.	A	.	.	LowGQX	END=156222289	GT	./.
chr1	156222290	.	C	.	.	LowGQX	END=156222292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222293	.	T	.	.	LowGQX	.	GT	./.
chr1	156222294	.	C	.	.	LowGQX	END=156222295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222296	.	C	.	.	LowGQX	.	GT	./.
chr1	156222297	.	T	.	.	LowGQX	END=156222298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222299	.	G	.	.	LowGQX	END=156222300	GT	./.
chr1	156222708	.	A	.	.	LowGQX	END=156222724	GT	./.
chr1	156222725	.	T	.	.	LowGQX	END=156222727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222728	.	C	.	.	LowGQX	.	GT	./.
chr1	156222729	.	A	.	.	LowGQX	END=156222757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222758	.	G	.	.	LowGQX	.	GT	./.
chr1	156222759	.	G	.	.	LowGQX	END=156222777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222778	.	C	.	.	LowGQX	.	GT	./.
chr1	156222779	.	A	.	.	LowGQX	END=156222781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222782	.	G	.	.	LowGQX	.	GT	./.
chr1	156222783	.	G	.	.	LowGQX	END=156222784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222785	.	C	.	.	LowGQX	.	GT	./.
chr1	156222786	.	C	.	.	LowGQX	END=156222787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156222788	.	G	.	.	LowGQX	.	GT	./.
chr1	156222789	.	G	.	.	LowGQX	END=156222871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156223220	.	C	.	.	LowGQX	END=156223319	GT	./.
chr1	156228764	.	A	.	.	LowGQX	END=156228791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156228792	.	T	.	.	LowGQX	.	GT	./.
chr1	156228793	.	C	.	.	LowGQX	END=156228807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156228808	.	T	.	.	LowGQX	.	GT	./.
chr1	156228809	.	G	.	.	LowGQX	END=156228840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156228841	.	A	.	.	LowGQX	END=156228956	GT	./.
chr1	156230170	.	C	.	.	LowGQX	END=156230348	GT	./.
chr1	156230349	.	G	.	.	LowGQX	END=156230350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156230351	.	C	.	.	LowGQX	.	GT	./.
chr1	156230352	.	T	.	.	LowGQX	END=156230378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156230379	.	C	.	.	LowGQX	.	GT	./.
chr1	156230380	.	T	.	.	LowGQX	END=156230388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156230389	.	A	.	.	LowGQX	.	GT	./.
chr1	156230390	.	T	.	.	LowGQX	END=156230419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156231112	.	G	.	.	LowGQX	END=156231211	GT	./.
chr1	156233184	.	A	.	.	LowGQX	.	GT	./.
chr1	156233185	.	C	.	.	LowGQX	END=156233188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233189	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	156233190	.	G	.	.	LowGQX	END=156233201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233202	.	A	.	.	LowGQX	END=156233203	GT	./.
chr1	156233204	.	G	.	.	LowGQX	END=156233207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233208	.	T	.	.	LowGQX	.	GT	./.
chr1	156233209	.	C	.	.	LowGQX	END=156233217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233218	.	T	.	.	LowGQX	.	GT	./.
chr1	156233219	.	C	.	.	LowGQX	END=156233237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233238	.	A	.	.	LowGQX	.	GT	./.
chr1	156233239	.	C	.	.	LowGQX	END=156233241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233242	.	T	.	.	LowGQX	.	GT	./.
chr1	156233243	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233244	.	A	.	.	LowGQX	.	GT	./.
chr1	156233245	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233246	.	A	.	.	LowGQX	.	GT	./.
chr1	156233247	.	G	.	.	LowGQX	END=156233252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233253	.	A	.	.	LowGQX	.	GT	./.
chr1	156233254	.	G	.	.	LowGQX	END=156233261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233262	.	T	.	.	LowGQX	.	GT	./.
chr1	156233263	.	C	.	.	LowGQX	END=156233268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233269	.	T	.	.	LowGQX	.	GT	./.
chr1	156233270	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233271	.	A	.	.	LowGQX	.	GT	./.
chr1	156233272	.	G	.	.	LowGQX	END=156233273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233274	.	A	.	.	LowGQX	.	GT	./.
chr1	156233275	.	C	.	.	LowGQX	END=156233276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233277	.	T	.	.	LowGQX	.	GT	./.
chr1	156233278	.	G	.	.	LowGQX	END=156233279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233280	.	A	.	.	LowGQX	.	GT	./.
chr1	156233281	.	G	.	.	LowGQX	END=156233291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233292	.	A	.	.	LowGQX	.	GT	./.
chr1	156233293	.	T	.	.	LowGQX	END=156233300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233301	.	T	.	.	LowGQX	.	GT	./.
chr1	156233302	.	C	.	.	LowGQX	END=156233308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233309	.	A	.	.	LowGQX	.	GT	./.
chr1	156233310	.	C	.	.	LowGQX	END=156233317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233318	.	T	.	.	LowGQX	.	GT	./.
chr1	156233319	.	C	.	.	LowGQX	END=156233322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233323	.	T	.	.	LowGQX	.	GT	./.
chr1	156233324	.	G	.	.	LowGQX	END=156233327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233328	.	T	.	.	LowGQX	.	GT	./.
chr1	156233329	.	C	.	.	LowGQX	END=156233331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233332	.	T	.	.	LowGQX	.	GT	./.
chr1	156233333	.	C	.	.	LowGQX	END=156233340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233341	.	A	.	.	LowGQX	.	GT	./.
chr1	156233342	.	C	.	.	LowGQX	END=156233354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233355	.	T	.	.	LowGQX	.	GT	./.
chr1	156233356	.	C	.	.	LowGQX	END=156233362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156233363	.	T	.	.	LowGQX	.	GT	./.
chr1	156235570	.	A	.	.	LowGQX	END=156235572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156235573	.	T	.	.	LowGQX	.	GT	./.
chr1	156235574	.	G	.	.	LowGQX	END=156235576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156235577	.	T	.	.	LowGQX	.	GT	./.
chr1	156235578	.	C	.	.	LowGQX	END=156235598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156235599	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	156235600	.	A	.	.	LowGQX	END=156235615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156235616	.	T	.	.	LowGQX	.	GT	./.
chr1	156235617	.	G	.	.	LowGQX	END=156235661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156235662	.	T	.	.	LowGQX	.	GT	./.
chr1	156235663	.	G	.	.	LowGQX	END=156235688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156235689	.	A	.	.	LowGQX	END=156236173	GT	./.
chr1	156236330	.	A	.	.	LowGQX	END=156236471	GT	./.
chr1	156237259	.	A	.	.	LowGQX	END=156237471	GT	./.
chr1	156237891	.	C	.	.	LowGQX	END=156237893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156237894	.	T	.	.	LowGQX	END=156237990	GT	./.
chr1	156238079	.	A	.	.	LowGQX	END=156238084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156238085	.	T	.	.	LowGQX	.	GT	./.
chr1	156238086	.	T	.	.	LowGQX	END=156238129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156238130	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	156238131	.	G	.	.	LowGQX	END=156238140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156238141	.	G	.	.	LowGQX	.	GT	./.
chr1	156238142	.	C	.	.	LowGQX	END=156238160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156238161	.	C	.	.	LowGQX	.	GT	./.
chr1	156238162	.	T	.	.	LowGQX	END=156238163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156238164	.	G	.	.	LowGQX	.	GT	./.
chr1	156238165	.	A	.	.	LowGQX	END=156238168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156238169	.	T	.	.	LowGQX	END=156238183	GT	./.
chr1	156238184	.	C	.	.	LowGQX	END=156238208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156242101	.	A	.	.	LowGQX	END=156242200	GT	./.
chr1	156243147	.	C	.	.	LowGQX	END=156243246	GT	./.
chr1	156244383	.	C	.	.	LowGQX	END=156244482	GT	./.
chr1	156246874	.	A	.	.	LowGQX	END=156247034	GT	./.
chr1	156247714	.	A	.	.	LowGQX	END=156247841	GT	./.
chr1	156248725	.	A	.	.	LowGQX	END=156248827	GT	./.
chr1	156252385	.	T	.	.	LowGQX	END=156252484	GT	./.
chr1	156255016	.	G	.	.	LowGQX	END=156255418	GT	./.
chr1	156255419	.	A	.	.	LowGQX	END=156255462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156255463	.	G	.	.	LowGQX	.	GT	./.
chr1	156255464	.	T	.	.	LowGQX	END=156255480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156255481	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156255482	.	G	.	.	LowGQX	END=156255488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156255489	.	A	.	.	LowGQX	.	GT	./.
chr1	156255490	.	C	.	.	LowGQX	END=156255494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156255495	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156255496	.	T	.	.	LowGQX	END=156255507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156255508	.	T	.	.	LowGQX	END=156255509	GT	./.
chr1	156255510	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156255511	.	C	.	.	LowGQX	END=156255513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156255514	.	A	.	.	LowGQX	.	GT	./.
chr1	156255515	.	C	.	.	LowGQX	END=156255519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156255520	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156255521	.	C	.	.	LowGQX	END=156255526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156255527	.	T	.	.	LowGQX	END=156255533	GT	./.
chr1	156255534	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156255535	.	A	.	.	LowGQX	.	GT	./.
chr1	156255536	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156255537	.	T	.	.	LowGQX	.	GT	./.
chr1	156255538	.	G	.	.	LowGQX	END=156255540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156255541	.	C	.	.	LowGQX	.	GT	./.
chr1	156255542	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156255543	.	G	.	.	LowGQX	.	GT	./.
chr1	156255544	.	A	.	.	LowGQX	END=156255547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156255548	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	156255549	.	G	.	.	LowGQX	END=156255569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	156255570	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	156255571	.	C	.	.	LowGQX	END=156255575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	156255576	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:2:3.01:60:3
chr1	156255577	.	G	.	.	LowGQX	END=156255616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	156255617	.	T	.	.	LowGQX	END=156255776	GT	./.
chr1	156256049	.	A	.	.	LowGQX	END=156256079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156256080	.	T	.	.	LowGQX	END=156256266	GT	./.
chr1	156261174	.	A	.	.	LowGQX	END=156261392	GT	./.
chr1	156261393	.	T	.	.	LowGQX	END=156261439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156261440	.	C	.	.	LowGQX	END=156261448	GT	./.
chr1	156262802	.	T	.	.	LowGQX	END=156263002	GT	./.
chr1	156263109	.	A	.	.	LowGQX	END=156263369	GT	./.
chr1	156263446	.	T	.	.	LowGQX	END=156263545	GT	./.
chr1	156263807	.	A	.	.	LowGQX	END=156264029	GT	./.
chr1	156264154	.	A	.	.	LowGQX	END=156264358	GT	./.
chr1	156264548	.	A	.	.	LowGQX	END=156264639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156264640	.	C	.	.	LowGQX	.	GT	./.
chr1	156264641	.	C	.	.	LowGQX	END=156264668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156264669	.	T	.	.	LowGQX	END=156264710	GT	./.
chr1	156264711	.	T	.	.	LowGQX	END=156264713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156264714	.	A	.	.	LowGQX	.	GT	./.
chr1	156264715	.	C	.	.	LowGQX	END=156264720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156264721	.	G	.	.	LowGQX	.	GT	./.
chr1	156264722	.	T	.	.	LowGQX	END=156264728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156264729	.	T	.	.	LowGQX	.	GT	./.
chr1	156264730	.	G	.	.	LowGQX	END=156264747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156264748	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	156264749	.	C	.	.	LowGQX	END=156264750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156264751	.	T	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	156264752	.	A	.	.	LowGQX	END=156264758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156264759	.	G	.	.	LowGQX	.	GT	./.
chr1	156264760	.	C	.	.	LowGQX	END=156264762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156264763	.	G	.	.	LowGQX	END=156264764	GT	./.
chr1	156264765	.	T	.	.	LowGQX	END=156264769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156264770	.	A	.	.	LowGQX	.	GT	./.
chr1	156264771	.	G	.	.	LowGQX	END=156264772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156264773	.	G	.	.	LowGQX	.	GT	./.
chr1	156264774	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156264775	.	G	.	.	LowGQX	END=156264777	GT	./.
chr1	156264778	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156264779	.	A	.	.	LowGQX	.	GT	./.
chr1	156264780	.	G	.	.	LowGQX	END=156264782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156264783	.	A	.	.	LowGQX	.	GT	./.
chr1	156264784	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156264785	.	T	.	.	LowGQX	.	GT	./.
chr1	156264786	.	T	.	.	LowGQX	END=156264787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156264788	.	G	.	.	LowGQX	.	GT	./.
chr1	156264789	.	G	.	.	LowGQX	END=156264799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156264800	.	A	.	.	LowGQX	.	GT	./.
chr1	156264801	.	G	.	.	LowGQX	END=156264806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156264807	.	C	.	.	LowGQX	.	GT	./.
chr1	156264808	.	C	.	.	LowGQX	END=156264809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156265315	.	A	.	.	LowGQX	END=156265479	GT	./.
chr1	156268559	.	T	.	.	LowGQX	END=156268629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156268630	.	C	.	.	LowGQX	.	GT	./.
chr1	156268631	.	A	.	.	LowGQX	END=156268636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156268637	.	G	.	.	LowGQX	.	GT	./.
chr1	156268638	.	T	.	.	LowGQX	END=156268644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156268645	.	A	.	.	LowGQX	.	GT	./.
chr1	156268646	.	A	.	.	LowGQX	END=156268648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156268649	.	A	.	.	LowGQX	.	GT	./.
chr1	156268650	.	G	.	.	LowGQX	END=156268659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156268660	.	A	.	.	LowGQX	.	GT	./.
chr1	156268661	.	T	.	.	LowGQX	END=156268673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156268674	.	C	.	.	LowGQX	.	GT	./.
chr1	156268675	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156268676	.	C	.	.	LowGQX	.	GT	./.
chr1	156268677	.	T	.	.	LowGQX	END=156268680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156268681	.	G	.	.	LowGQX	.	GT	./.
chr1	156268682	.	A	.	.	LowGQX	END=156268692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156268693	.	G	.	.	LowGQX	END=156268765	GT	./.
chr1	156268766	.	T	.	.	LowGQX	END=156268785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156268786	.	G	.	.	LowGQX	.	GT	./.
chr1	156268787	.	A	.	.	LowGQX	END=156268788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156268789	.	T	.	.	LowGQX	.	GT	./.
chr1	156268790	.	C	.	.	LowGQX	END=156268798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156268799	.	T	.	.	LowGQX	.	GT	./.
chr1	156268800	.	G	.	.	LowGQX	END=156268808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156268809	.	T	.	.	LowGQX	.	GT	./.
chr1	156268810	.	G	.	.	LowGQX	END=156268813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156268814	.	A	.	.	LowGQX	.	GT	./.
chr1	156268815	.	T	.	.	LowGQX	END=156268914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156268915	.	T	.	.	LowGQX	END=156268982	GT	./.
chr1	156278988	.	A	.	.	LowGQX	END=156279096	GT	./.
chr1	156280347	.	A	.	.	LowGQX	END=156280367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156280368	.	G	.	.	LowGQX	END=156280369	GT	./.
chr1	156280370	.	C	.	.	LowGQX	END=156280413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156280414	.	T	.	.	LowGQX	END=156280482	GT	./.
chr1	156280739	.	A	.	.	LowGQX	END=156280884	GT	./.
chr1	156280885	.	G	.	.	LowGQX	END=156280988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156281830	.	A	.	.	LowGQX	END=156282014	GT	./.
chr1	156286948	.	C	.	.	LowGQX	END=156287047	GT	./.
chr1	156287204	.	A	.	.	LowGQX	END=156287340	GT	./.
chr1	156288657	.	A	.	.	LowGQX	END=156288810	GT	./.
chr1	156290628	.	A	.	.	LowGQX	END=156290818	GT	./.
chr1	156294761	.	A	.	.	LowGQX	END=156294882	GT	./.
chr1	156302822	.	C	.	.	LowGQX	END=156303141	GT	./.
chr1	156303336	.	A	.	.	LowGQX	END=156303436	GT	./.
chr1	156304486	.	A	.	.	LowGQX	END=156304585	GT	./.
chr1	156304635	.	A	.	.	LowGQX	END=156304734	GT	./.
chr1	156305599	.	C	.	.	LowGQX	END=156305698	GT	./.
chr1	156306830	.	C	.	.	LowGQX	END=156307031	GT	./.
chr1	156307911	.	A	.	.	LowGQX	END=156308010	GT	./.
chr1	156309516	.	T	.	.	LowGQX	.	GT	./.
chr1	156309517	.	C	.	.	LowGQX	END=156309520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309521	.	C	.	.	LowGQX	.	GT	./.
chr1	156309522	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309523	.	C	.	.	LowGQX	END=156309524	GT	./.
chr1	156309525	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309526	.	G	.	.	LowGQX	.	GT	./.
chr1	156309527	.	C	.	.	LowGQX	END=156309528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309529	.	C	.	.	LowGQX	.	GT	./.
chr1	156309530	.	C	.	.	LowGQX	END=156309531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309532	.	C	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	156309533	.	A	.	.	LowGQX	END=156309534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309535	.	C	.	.	LowGQX	.	GT	./.
chr1	156309536	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309537	.	G	.	.	LowGQX	END=156309539	GT	./.
chr1	156309540	.	G	.	.	LowGQX	END=156309545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309546	.	C	.	.	LowGQX	.	GT	./.
chr1	156309547	.	A	.	.	LowGQX	END=156309548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309549	.	A	.	.	LowGQX	END=156309551	GT	./.
chr1	156309552	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309553	.	A	.	.	LowGQX	.	GT	./.
chr1	156309554	.	G	.	.	LowGQX	END=156309556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309557	.	G	.	.	LowGQX	END=156309559	GT	./.
chr1	156309560	.	C	.	.	LowGQX	END=156309561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309562	.	C	.	.	LowGQX	.	GT	./.
chr1	156309563	.	T	.	.	LowGQX	END=156309566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309567	.	C	.	.	LowGQX	END=156309569	GT	./.
chr1	156309570	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309571	.	C	.	.	LowGQX	END=156309574	GT	./.
chr1	156309575	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309576	.	A	.	.	LowGQX	.	GT	./.
chr1	156309577	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309578	.	A	.	.	LowGQX	.	GT	./.
chr1	156309579	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309580	.	A	.	.	LowGQX	.	GT	./.
chr1	156309581	.	A	.	.	LowGQX	END=156309585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309586	.	T	.	.	LowGQX	.	GT	./.
chr1	156309587	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309588	.	T	.	.	LowGQX	.	GT	./.
chr1	156309589	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309590	.	T	.	.	LowGQX	END=156309591	GT	./.
chr1	156309592	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309593	.	G	.	.	LowGQX	END=156309594	GT	./.
chr1	156309595	.	G	.	.	LowGQX	END=156309602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309603	.	T	.	.	LowGQX	END=156309604	GT	./.
chr1	156309605	.	C	.	.	LowGQX	END=156309607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309608	.	C	.	.	LowGQX	END=156309609	GT	./.
chr1	156309610	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156309611	.	C	.	.	LowGQX	.	GT	./.
chr1	156309612	.	C	.	.	LowGQX	END=156309615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156314369	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156314370	.	G	.	.	LowGQX	END=156314371	GT	./.
chr1	156314372	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156314373	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156314374	.	C	.	.	LowGQX	END=156314375	GT	./.
chr1	156314376	.	G	.	.	LowGQX	END=156314380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156314381	.	A	.	.	LowGQX	.	GT	./.
chr1	156314382	.	G	.	.	LowGQX	END=156314383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156314384	.	G	.	.	LowGQX	END=156314385	GT	./.
chr1	156314386	.	A	.	.	LowGQX	END=156314387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156314388	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156314389	.	C	.	.	LowGQX	END=156314393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156314394	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156314395	.	C	.	.	LowGQX	END=156314398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156314399	.	G	.	.	LowGQX	.	GT	./.
chr1	156314400	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156314401	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156314402	.	T	.	.	LowGQX	END=156314412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156314413	.	C	A	7.08	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=3.54;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,1:2:3.01:36,3,0:60:3:0.500
chr1	156314414	.	A	.	.	LowGQX	.	GT	./.
chr1	156314415	.	A	.	.	LowGQX	END=156314416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156314417	.	A	.	.	LowGQX	.	GT	./.
chr1	156314418	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156314419	.	C	.	.	LowGQX	.	GT	./.
chr1	156314420	.	C	.	.	LowGQX	END=156314421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156314422	.	C	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	156314423	.	C	.	.	LowGQX	END=156314424	GT	./.
chr1	156314425	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156314426	.	C	.	.	LowGQX	.	GT	./.
chr1	156314427	.	A	.	.	LowGQX	END=156314435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156314436	.	A	.	.	LowGQX	END=156314437	GT	./.
chr1	156314438	.	T	.	.	LowGQX	END=156314441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156314442	.	C	.	.	LowGQX	END=156314443	GT	./.
chr1	156314444	.	A	.	.	LowGQX	END=156314445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156314446	.	C	.	.	LowGQX	.	GT	./.
chr1	156314447	.	A	.	.	LowGQX	END=156314451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156314452	.	C	.	.	LowGQX	END=156314454	GT	./.
chr1	156314455	.	C	.	.	LowGQX	END=156314458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156314459	.	A	.	.	LowGQX	END=156314460	GT	./.
chr1	156314461	.	C	.	.	LowGQX	END=156314468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156314469	.	C	.	.	LowGQX	.	GT	./.
chr1	156314470	.	T	.	.	LowGQX	END=156314472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156314473	.	A	.	.	LowGQX	.	GT	./.
chr1	156314474	.	C	.	.	LowGQX	END=156314476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156314477	.	C	.	.	LowGQX	.	GT	./.
chr1	156314478	.	C	.	.	LowGQX	END=156314479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156314480	.	G	.	.	LowGQX	END=156314481	GT	./.
chr1	156314482	.	C	.	.	LowGQX	END=156314486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156314487	.	A	.	.	LowGQX	END=156314490	GT	./.
chr1	156314491	.	T	.	.	LowGQX	END=156314494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156314495	.	C	.	.	LowGQX	.	GT	./.
chr1	156314496	.	T	.	.	LowGQX	END=156314498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156314499	.	G	.	.	LowGQX	END=156314500	GT	./.
chr1	156314501	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156316557	.	A	.	.	LowGQX	END=156316627	GT	./.
chr1	156316628	.	A	.	.	LowGQX	END=156316686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156316687	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	156316688	.	C	.	.	LowGQX	END=156316712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156316713	.	T	.	.	LowGQX	.	GT	./.
chr1	156316714	.	T	.	.	LowGQX	END=156316775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156337535	.	A	.	.	LowGQX	END=156337637	GT	./.
chr1	156339039	.	C	.	.	LowGQX	END=156339229	GT	./.
chr1	156340899	.	T	.	.	LowGQX	END=156341058	GT	./.
chr1	156344327	.	A	.	.	LowGQX	END=156344337	GT	./.
chr1	156344338	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156344339	.	C	.	.	LowGQX	END=156344341	GT	./.
chr1	156344342	.	C	.	.	LowGQX	END=156344343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156344344	.	G	.	.	LowGQX	.	GT	./.
chr1	156344345	.	T	.	.	LowGQX	END=156344346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156344347	.	C	.	.	LowGQX	END=156344349	GT	./.
chr1	156344350	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156344351	.	C	.	.	LowGQX	.	GT	./.
chr1	156344352	.	C	.	.	LowGQX	END=156344354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156344355	.	G	.	.	LowGQX	END=156344356	GT	./.
chr1	156344357	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156344358	.	G	.	.	LowGQX	END=156344359	GT	./.
chr1	156344360	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156344361	.	A	.	.	LowGQX	.	GT	./.
chr1	156344362	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156344363	.	G	.	.	LowGQX	END=156344364	GT	./.
chr1	156344365	.	A	.	.	LowGQX	END=156344366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156344367	.	G	.	.	LowGQX	END=156344369	GT	./.
chr1	156344370	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156344371	.	G	.	.	LowGQX	.	GT	./.
chr1	156344372	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156344373	.	A	.	.	LowGQX	END=156344374	GT	./.
chr1	156344375	.	T	.	.	LowGQX	END=156344378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156344379	.	T	.	.	LowGQX	.	GT	./.
chr1	156344380	.	T	.	.	LowGQX	END=156344488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156344489	.	T	.	.	LowGQX	END=156344501	GT	./.
chr1	156347090	.	A	.	.	LowGQX	END=156347116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	156347117	.	C	.	.	LowGQX	END=156347130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156347131	.	G	A	3.07	LowGQX;LowQD;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=1.54;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:30,0,30:60:3:0.500
chr1	156347132	.	C	.	.	LowGQX	.	GT	./.
chr1	156347133	.	T	.	.	LowGQX	END=156347134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156347135	.	C	.	.	LowGQX	END=156347136	GT	./.
chr1	156347137	.	T	.	.	LowGQX	END=156347138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156347139	.	A	.	.	LowGQX	.	GT	./.
chr1	156347140	.	T	.	.	LowGQX	END=156347146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156347147	.	C	.	.	LowGQX	END=156347222	GT	./.
chr1	156347223	.	G	.	.	LowGQX	END=156347230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156347231	.	C	.	.	LowGQX	END=156347232	GT	./.
chr1	156347233	.	T	.	.	LowGQX	END=156347235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156347236	.	T	.	.	LowGQX	.	GT	./.
chr1	156347237	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156347238	.	C	.	.	LowGQX	.	GT	./.
chr1	156347239	.	A	.	.	LowGQX	END=156347244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156347245	.	T	.	.	LowGQX	.	GT	./.
chr1	156347246	.	C	.	.	LowGQX	END=156347248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156347249	.	C	.	.	LowGQX	.	GT	./.
chr1	156347250	.	G	.	.	LowGQX	END=156347252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156347253	.	G	.	.	LowGQX	.	GT	./.
chr1	156347254	.	G	.	.	LowGQX	END=156347258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156347259	.	A	.	.	LowGQX	END=156347261	GT	./.
chr1	156347262	.	C	.	.	LowGQX	END=156347264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156347265	.	G	.	.	LowGQX	.	GT	./.
chr1	156347266	.	T	.	.	LowGQX	END=156347267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156347268	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156347269	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156347270	.	C	.	.	LowGQX	.	GT	./.
chr1	156347271	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156347272	.	T	.	.	LowGQX	.	GT	./.
chr1	156347273	.	G	.	.	LowGQX	END=156347276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156347277	.	A	.	.	LowGQX	.	GT	./.
chr1	156347278	.	G	.	.	LowGQX	END=156347279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156347280	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156347779	.	A	.	.	LowGQX	END=156348192	GT	./.
chr1	156351106	.	C	.	.	LowGQX	END=156351305	GT	./.
chr1	156351306	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351595	.	A	.	.	LowGQX	END=156351611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351612	.	G	.	.	LowGQX	.	GT	./.
chr1	156351613	.	C	.	.	LowGQX	END=156351630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351631	.	T	.	.	LowGQX	.	GT	./.
chr1	156351632	.	T	.	.	LowGQX	END=156351640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351641	.	G	.	.	LowGQX	END=156351643	GT	./.
chr1	156351644	.	C	.	.	LowGQX	END=156351646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351647	.	A	.	.	LowGQX	.	GT	./.
chr1	156351648	.	A	.	.	LowGQX	END=156351649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351650	.	T	.	.	LowGQX	.	GT	./.
chr1	156351651	.	G	.	.	LowGQX	END=156351652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351653	.	A	.	.	LowGQX	END=156351654	GT	./.
chr1	156351655	.	T	.	.	LowGQX	END=156351661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351662	.	G	.	.	LowGQX	END=156351663	GT	./.
chr1	156351664	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351665	.	A	.	.	LowGQX	.	GT	./.
chr1	156351666	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351667	.	C	.	.	LowGQX	END=156351670	GT	./.
chr1	156351671	.	T	.	.	LowGQX	END=156351682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156351683	.	A	.	.	LowGQX	.	GT	./.
chr1	156351684	.	G	.	.	LowGQX	END=156351689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156351690	.	T	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	156351691	.	T	.	.	LowGQX	END=156351693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351694	.	T	.	.	LowGQX	.	GT	./.
chr1	156351695	.	G	.	.	LowGQX	END=156351698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351699	.	G	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	156351700	.	G	.	.	LowGQX	END=156351705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351706	.	T	.	.	LowGQX	.	GT	./.
chr1	156351707	.	C	.	.	LowGQX	END=156351711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351712	.	C	.	.	LowGQX	.	GT	./.
chr1	156351713	.	G	.	.	LowGQX	END=156351714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351715	.	T	.	.	LowGQX	.	GT	./.
chr1	156351716	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351717	.	G	.	.	LowGQX	.	GT	./.
chr1	156351718	.	G	.	.	LowGQX	END=156351723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351724	.	A	.	.	LowGQX	.	GT	./.
chr1	156351725	.	G	.	.	LowGQX	END=156351731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351732	.	A	.	.	LowGQX	END=156351733	GT	./.
chr1	156351734	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351735	.	G	.	.	LowGQX	END=156351736	GT	./.
chr1	156351737	.	A	.	.	LowGQX	END=156351741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351742	.	T	.	.	LowGQX	.	GT	./.
chr1	156351743	.	G	.	.	LowGQX	END=156351746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351747	.	C	.	.	LowGQX	.	GT	./.
chr1	156351748	.	T	.	.	LowGQX	END=156351751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351752	.	A	.	.	LowGQX	.	GT	./.
chr1	156351753	.	G	.	.	LowGQX	END=156351757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351758	.	G	.	.	LowGQX	.	GT	./.
chr1	156351759	.	G	.	.	LowGQX	END=156351763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351764	.	A	.	.	LowGQX	.	GT	./.
chr1	156351765	.	C	.	.	LowGQX	END=156351769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351770	.	A	.	.	LowGQX	END=156351772	GT	./.
chr1	156351773	.	C	.	.	LowGQX	END=156351774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156351857	.	A	.	.	LowGQX	END=156352069	GT	./.
chr1	156352537	.	A	.	.	LowGQX	END=156352574	GT	./.
chr1	156352575	.	G	.	.	LowGQX	END=156352662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156354193	.	T	.	.	LowGQX	END=156354394	GT	./.
chr1	156354553	.	C	.	.	LowGQX	END=156354652	GT	./.
chr1	156374251	.	C	.	.	LowGQX	END=156374308	GT	./.
chr1	156374309	.	A	.	.	LowGQX	END=156374389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156374390	.	T	.	.	LowGQX	.	GT	./.
chr1	156374391	.	G	.	.	LowGQX	END=156374408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156376870	.	A	.	.	LowGQX	END=156376991	GT	./.
chr1	156377261	.	C	.	.	LowGQX	END=156377340	GT	./.
chr1	156377341	.	G	.	.	LowGQX	END=156377427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156377428	.	A	.	.	LowGQX	.	GT	./.
chr1	156377429	.	C	.	.	LowGQX	END=156377464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156377465	.	A	.	.	LowGQX	.	GT	./.
chr1	156377466	.	G	.	.	LowGQX	END=156377512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156377632	.	A	.	.	LowGQX	END=156377769	GT	./.
chr1	156384444	.	A	.	.	LowGQX	END=156384460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156384461	.	C	.	.	LowGQX	.	GT	./.
chr1	156384462	.	G	.	.	LowGQX	END=156384463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156384464	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	156384465	.	G	.	.	LowGQX	.	GT	./.
chr1	156384466	.	T	.	.	LowGQX	END=156384467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156384468	.	C	.	.	LowGQX	.	GT	./.
chr1	156384469	.	T	.	.	LowGQX	END=156384475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156384476	.	G	.	.	LowGQX	END=156384477	GT	./.
chr1	156384478	.	C	.	.	LowGQX	END=156384481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156384482	.	A	.	.	LowGQX	.	GT	./.
chr1	156384483	.	T	.	.	LowGQX	END=156384484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156384485	.	G	.	.	LowGQX	.	GT	./.
chr1	156384486	.	T	.	.	LowGQX	END=156384490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156384491	.	A	.	.	LowGQX	.	GT	./.
chr1	156384492	.	C	.	.	LowGQX	END=156384494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156384495	.	A	.	.	LowGQX	.	GT	./.
chr1	156384496	.	G	.	.	LowGQX	END=156384498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156384499	.	A	.	.	LowGQX	.	GT	./.
chr1	156384500	.	G	.	.	LowGQX	END=156384501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156384502	.	A	.	.	LowGQX	.	GT	./.
chr1	156384503	.	G	.	.	LowGQX	END=156384504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156384505	.	G	.	.	LowGQX	.	GT	./.
chr1	156384506	.	T	.	.	LowGQX	END=156384522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156384523	.	A	.	.	LowGQX	.	GT	./.
chr1	156384524	.	C	.	.	LowGQX	END=156384526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156384527	.	A	.	.	LowGQX	.	GT	./.
chr1	156384528	.	C	.	.	LowGQX	END=156384529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156384530	.	C	.	.	LowGQX	END=156384531	GT	./.
chr1	156384532	.	C	.	.	LowGQX	END=156384535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156384536	.	A	.	.	LowGQX	.	GT	./.
chr1	156384537	.	G	.	.	LowGQX	END=156384542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156384543	.	A	.	.	LowGQX	.	GT	./.
chr1	156384544	.	A	.	.	LowGQX	END=156384546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156384547	.	T	.	.	LowGQX	.	GT	./.
chr1	156386547	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156386548	.	C	.	.	LowGQX	.	GT	./.
chr1	156386549	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156386550	.	A	.	.	LowGQX	.	GT	./.
chr1	156386551	.	G	.	.	LowGQX	END=156386560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156386561	.	C	.	.	LowGQX	.	GT	./.
chr1	156386562	.	T	.	.	LowGQX	END=156386572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156386573	.	A	.	.	LowGQX	END=156386574	GT	./.
chr1	156386575	.	C	.	.	LowGQX	END=156386577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156386578	.	G	.	.	LowGQX	END=156386579	GT	./.
chr1	156386580	.	A	.	.	LowGQX	END=156386581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156386582	.	A	.	.	LowGQX	.	GT	./.
chr1	156386583	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156386584	.	G	.	.	LowGQX	END=156386585	GT	./.
chr1	156386586	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156386587	.	G	.	.	LowGQX	END=156386588	GT	./.
chr1	156386589	.	A	.	.	LowGQX	END=156386592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156386593	.	C	.	.	LowGQX	.	GT	./.
chr1	156386594	.	C	.	.	LowGQX	END=156386595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156386596	.	C	.	.	LowGQX	.	GT	./.
chr1	156386597	.	A	.	.	LowGQX	END=156386602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156386603	.	A	.	.	LowGQX	.	GT	./.
chr1	156386604	.	A	.	.	LowGQX	END=156386610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156386611	.	G	.	.	LowGQX	.	GT	./.
chr1	156386612	.	A	.	.	LowGQX	END=156386623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156386624	.	A	.	.	LowGQX	.	GT	./.
chr1	156386625	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156386626	.	G	.	.	LowGQX	.	GT	./.
chr1	156386627	.	A	.	.	LowGQX	END=156386629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156386630	.	A	.	.	LowGQX	END=156386646	GT	./.
chr1	156389963	.	C	.	.	LowGQX	END=156390012	GT	./.
chr1	156390013	.	G	.	.	LowGQX	END=156390094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156390095	.	G	.	.	LowGQX	.	GT	./.
chr1	156390096	.	T	.	.	LowGQX	END=156390097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156390098	.	A	.	.	LowGQX	.	GT	./.
chr1	156390099	.	G	.	.	LowGQX	END=156390103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156390104	.	G	.	.	LowGQX	.	GT	./.
chr1	156390105	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156390106	.	T	.	.	LowGQX	.	GT	./.
chr1	156390107	.	T	.	.	LowGQX	END=156390119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156390120	.	T	.	.	LowGQX	.	GT	./.
chr1	156390121	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156390122	.	T	.	.	LowGQX	.	GT	./.
chr1	156390123	.	G	.	.	LowGQX	END=156390127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156390128	.	G	.	.	LowGQX	.	GT	./.
chr1	156390129	.	T	.	.	LowGQX	END=156390139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156390140	.	A	.	.	LowGQX	.	GT	./.
chr1	156390141	.	T	.	.	LowGQX	END=156390150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156390151	.	C	.	.	LowGQX	END=156390152	GT	./.
chr1	156390153	.	G	.	.	LowGQX	END=156390161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156390162	.	C	.	.	LowGQX	END=156390227	GT	./.
chr1	156396568	.	C	.	.	LowGQX	END=156396667	GT	./.
chr1	156399142	.	C	.	.	LowGQX	END=156399241	GT	./.
chr1	156437333	.	A	.	.	LowGQX	END=156437492	GT	./.
chr1	156437776	.	C	.	.	LowGQX	END=156437777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437778	.	A	.	.	LowGQX	.	GT	./.
chr1	156437779	.	C	.	.	LowGQX	END=156437782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437783	.	A	.	.	LowGQX	.	GT	./.
chr1	156437784	.	C	.	.	LowGQX	END=156437787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437788	.	G	.	.	LowGQX	.	GT	./.
chr1	156437789	.	G	.	.	LowGQX	END=156437791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437792	.	T	.	.	LowGQX	.	GT	./.
chr1	156437793	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437794	.	A	.	.	LowGQX	.	GT	./.
chr1	156437795	.	A	.	.	LowGQX	END=156437796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437797	.	C	.	.	LowGQX	.	GT	./.
chr1	156437798	.	C	.	.	LowGQX	END=156437800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437801	.	A	.	.	LowGQX	END=156437802	GT	./.
chr1	156437803	.	C	.	.	LowGQX	END=156437806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437807	.	T	.	.	LowGQX	END=156437808	GT	./.
chr1	156437809	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437810	.	A	.	.	LowGQX	END=156437812	GT	./.
chr1	156437813	.	G	.	.	LowGQX	END=156437816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437817	.	A	.	.	LowGQX	.	GT	./.
chr1	156437818	.	G	.	.	LowGQX	END=156437819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437820	.	C	.	.	LowGQX	.	GT	./.
chr1	156437821	.	C	.	.	LowGQX	END=156437824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437825	.	G	.	.	LowGQX	END=156437826	GT	./.
chr1	156437827	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437828	.	T	.	.	LowGQX	.	GT	./.
chr1	156437829	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437830	.	A	.	.	LowGQX	END=156437832	GT	./.
chr1	156437833	.	C	.	.	LowGQX	END=156437835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437836	.	T	.	.	LowGQX	.	GT	./.
chr1	156437837	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437838	.	G	.	.	LowGQX	END=156437839	GT	./.
chr1	156437840	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437841	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156437842	.	T	.	.	LowGQX	END=156437849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156437850	.	G	.	.	LowGQX	.	GT	./.
chr1	156437851	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156437852	.	A	.	.	LowGQX	.	GT	./.
chr1	156437853	.	G	.	.	LowGQX	END=156437857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156437858	.	A	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	156437859	.	G	.	.	LowGQX	END=156437860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156437861	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156437862	.	T	.	.	LowGQX	END=156437863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156437864	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	156437865	.	G	.	.	LowGQX	.	GT	./.
chr1	156437866	.	C	.	.	LowGQX	END=156437873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156437874	.	C	.	.	LowGQX	.	GT	./.
chr1	156437875	.	C	.	.	LowGQX	END=156437880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156437881	.	T	.	.	LowGQX	.	GT	./.
chr1	156437882	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156437883	.	C	.	.	LowGQX	.	GT	./.
chr1	156437884	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156437885	.	T	.	.	LowGQX	.	GT	./.
chr1	156437886	.	C	.	.	LowGQX	END=156437887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437888	.	T	.	.	LowGQX	END=156437890	GT	./.
chr1	156437891	.	C	.	.	LowGQX	END=156437893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437894	.	T	.	.	LowGQX	.	GT	./.
chr1	156437895	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437896	.	T	.	.	LowGQX	.	GT	./.
chr1	156437897	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437898	.	C	.	.	LowGQX	END=156437899	GT	./.
chr1	156437900	.	G	.	.	LowGQX	END=156437901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437902	.	C	.	.	LowGQX	.	GT	./.
chr1	156437903	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437904	.	C	.	.	LowGQX	.	GT	./.
chr1	156437905	.	A	.	.	LowGQX	END=156437906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437907	.	A	.	.	LowGQX	.	GT	./.
chr1	156437908	.	G	.	.	LowGQX	END=156437909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437910	.	A	.	.	LowGQX	.	GT	./.
chr1	156437911	.	T	.	.	LowGQX	END=156437912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437913	.	C	.	.	LowGQX	END=156437916	GT	./.
chr1	156437917	.	G	.	.	LowGQX	END=156437919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437920	.	T	.	.	LowGQX	.	GT	./.
chr1	156437921	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437922	.	G	.	.	LowGQX	.	GT	./.
chr1	156437923	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437924	.	C	.	.	LowGQX	END=156437925	GT	./.
chr1	156437926	.	G	.	.	LowGQX	END=156437939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437940	.	C	.	.	LowGQX	.	GT	./.
chr1	156437941	.	A	.	.	LowGQX	END=156437944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437945	.	T	.	.	LowGQX	.	GT	./.
chr1	156437946	.	C	.	.	LowGQX	END=156437948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437949	.	G	.	.	LowGQX	.	GT	./.
chr1	156437950	.	G	.	.	LowGQX	END=156437964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437965	.	C	.	.	LowGQX	.	GT	./.
chr1	156437966	.	A	.	.	LowGQX	END=156437967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437968	.	A	.	.	LowGQX	.	GT	./.
chr1	156437969	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437970	.	C	.	.	LowGQX	.	GT	./.
chr1	156437971	.	T	.	.	LowGQX	END=156437973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437974	.	A	.	.	LowGQX	.	GT	./.
chr1	156437975	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437976	.	G	.	.	LowGQX	.	GT	./.
chr1	156437977	.	G	.	.	LowGQX	END=156437980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437981	.	G	.	.	LowGQX	END=156437982	GT	./.
chr1	156437983	.	C	.	.	LowGQX	END=156437989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156437990	.	C	.	.	LowGQX	END=156438093	GT	./.
chr1	156438570	.	A	.	.	LowGQX	END=156438571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156438572	.	A	.	.	LowGQX	END=156438578	GT	./.
chr1	156438579	.	T	.	.	LowGQX	END=156438580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156438581	.	C	.	.	LowGQX	END=156438680	GT	./.
chr1	156438681	.	G	.	.	LowGQX	END=156438723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156438724	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156438725	.	T	.	.	LowGQX	END=156438783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156438784	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	156438785	.	G	.	.	LowGQX	END=156438811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	156438812	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	156438813	.	C	.	.	LowGQX	END=156438814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	156444867	.	G	.	.	LowGQX	END=156445016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156445017	.	G	.	.	LowGQX	END=156445031	GT	./.
chr1	156446247	.	A	.	.	LowGQX	END=156446287	GT	./.
chr1	156446288	.	G	.	.	LowGQX	END=156446346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156446791	.	G	.	.	LowGQX	END=156446996	GT	./.
chr1	156449061	.	T	.	.	LowGQX	END=156449119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156449120	.	T	.	.	LowGQX	END=156449160	GT	./.
chr1	156449306	.	T	.	.	LowGQX	END=156449401	GT	./.
chr1	156449402	.	G	.	.	LowGQX	END=156449486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156449487	.	A	.	.	LowGQX	END=156449655	GT	./.
chr1	156450434	.	C	.	.	LowGQX	END=156450548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156450549	.	C	.	.	LowGQX	END=156450569	GT	./.
chr1	156450624	.	A	.	.	LowGQX	END=156450761	GT	./.
chr1	156450762	.	G	.	.	LowGQX	END=156450790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156450791	.	G	.	.	LowGQX	.	GT	./.
chr1	156450792	.	G	.	.	LowGQX	END=156450794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156452227	.	A	.	.	PASS	END=156452244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	156452245	.	T	.	.	PASS	END=156452364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	156452365	.	C	.	.	PASS	END=156452386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	156452387	.	C	.	.	PASS	END=156452407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	156452408	.	C	.	.	PASS	END=156452434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	156453008	.	G	.	.	LowGQX	END=156453107	GT	./.
chr1	156496276	.	T	.	.	PASS	END=156496369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:260:99:60
chr1	156496370	.	C	.	.	PASS	END=156496390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	156496391	.	C	.	.	PASS	END=156496393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	156497742	.	A	.	.	PASS	END=156497764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	156497765	.	C	.	.	PASS	END=156497803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:280:99:60
chr1	156497804	.	C	.	.	PASS	END=156497854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:329:99:60
chr1	156498299	.	A	.	.	PASS	END=156498358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	156498359	.	C	.	.	PASS	END=156498387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	156498388	.	C	.	.	PASS	END=156498404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	156498706	.	A	.	.	PASS	END=156498727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	156498728	.	G	.	.	PASS	END=156498774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	156498775	.	C	.	.	PASS	END=156498807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	156498808	.	A	.	.	PASS	END=156498872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	156498873	.	T	.	.	PASS	END=156498876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	156499895	.	A	.	.	PASS	END=156499928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr1	156499929	.	C	.	.	PASS	END=156500007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:283:99:60
chr1	156500008	.	C	.	.	PASS	END=156500074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	156500075	.	T	.	.	PASS	END=156500103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	156500104	.	T	.	.	PASS	END=156500111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	156500946	.	A	.	.	PASS	END=156501024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	156501025	.	A	.	.	PASS	END=156501045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	156502770	.	A	.	.	PASS	END=156502799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	156502800	.	C	.	.	PASS	END=156502869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	156502870	.	C	.	.	PASS	END=156502900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	156503511	.	C	.	.	PASS	END=156503540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	156503541	.	T	C	5769.93	PASS	DP=197;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=15.2987;MQ=60;MQ0=0;QD=29.29;SB=-2797.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,196:197:99:5770,439,0:60:99:1.000
chr1	156503542	.	C	.	.	PASS	END=156503658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	156503659	.	C	.	.	PASS	END=156503669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	156503799	.	A	.	.	PASS	END=156503895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	156503896	.	C	.	.	PASS	END=156503935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	156504291	.	A	.	.	PASS	END=156504490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	156504491	.	T	.	.	PASS	END=156504514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	156504515	.	T	.	.	PASS	END=156504527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	156504888	.	T	.	.	PASS	END=156504927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	156504928	.	A	.	.	PASS	END=156504929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	156504930	.	G	.	.	PASS	END=156504936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	156504937	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:42:0:60
chr1	156504938	.	G	.	.	PASS	END=156504941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	156504942	.	A	.	.	PASS	END=156504955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:87:60
chr1	156504956	.	T	.	.	PASS	END=156505047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	156506971	.	A	.	.	PASS	END=156507011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	156507012	.	T	.	.	PASS	END=156507064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	156507065	.	C	.	.	PASS	END=156507109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	156507110	.	A	.	.	PASS	END=156507115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	156508599	.	A	.	.	PASS	END=156508612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	156508613	.	G	.	.	PASS	END=156508660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	156508661	.	T	.	.	PASS	END=156508779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	156508780	.	T	.	.	PASS	END=156508809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	156508810	.	C	.	.	PASS	END=156508826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	156508827	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:111:99:60
chr1	156509164	.	A	.	.	PASS	END=156509186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	156509187	.	G	.	.	PASS	END=156509226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	156509227	.	T	.	.	PASS	END=156509318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	156509319	.	A	.	.	PASS	END=156509331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	156509628	.	A	.	.	PASS	END=156509671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	156509672	.	C	.	.	PASS	END=156509747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:81:60
chr1	156509748	.	C	.	.	PASS	END=156509776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	156509777	.	C	.	.	PASS	END=156509781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	156509782	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:60:60
chr1	156509783	.	C	.	.	PASS	END=156509784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	156510498	.	A	.	.	PASS	END=156510533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	156510534	.	A	.	.	PASS	END=156510550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	156510551	.	G	.	.	PASS	END=156510682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	156510683	.	A	.	.	PASS	END=156510697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	156510698	.	G	.	.	PASS	END=156510709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	156510710	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:111:99:60
chr1	156513758	.	G	.	.	PASS	END=156513777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	156513778	.	A	.	.	PASS	END=156513857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	156513930	.	A	.	.	PASS	END=156514029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	156514173	.	G	.	.	PASS	END=156514251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	156514252	.	C	.	.	PASS	END=156514265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	156514266	.	T	.	.	PASS	END=156514272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	156517863	.	A	.	.	PASS	END=156517894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	156517895	.	C	.	.	PASS	END=156518011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr1	156518012	.	A	.	.	PASS	END=156518037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	156518138	.	A	.	.	PASS	END=156518181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	156518182	.	G	.	.	PASS	END=156518281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	156518371	.	A	.	.	PASS	END=156518432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	156518433	.	C	.	.	PASS	END=156518490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr1	156518491	.	T	.	.	PASS	END=156518522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	156518523	.	C	.	.	PASS	END=156518542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	156520049	.	T	.	.	PASS	END=156520063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	156520064	.	G	.	.	PASS	END=156520148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	156521495	.	A	.	.	PASS	END=156521662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	156521764	.	A	.	.	PASS	END=156521873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	156521874	.	G	.	.	PASS	END=156521889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	156524025	.	A	.	.	PASS	END=156524154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr1	156524155	.	A	.	.	PASS	END=156524186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	156526302	.	A	.	.	PASS	END=156526333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	156526334	.	C	.	.	PASS	END=156526386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:266:99:60
chr1	156526387	.	C	G	3282.83	PASS	BaseQRankSum=2.623;DP=344;Dels=0.00;FS=1.333;HRun=0;HaplotypeScore=14.2565;MQ=60;MQ0=0;MQRankSum=-1.119;QD=9.54;ReadPosRankSum=1.422;SB=-1972.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:199,144:344:99:3283,0,4468:60:99:0.420
chr1	156526388	.	T	.	.	PASS	END=156526429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:300:99:60
chr1	156526430	.	G	A	4178.06	PASS	BaseQRankSum=1.081;DP=301;Dels=0.00;FS=4.958;HRun=0;HaplotypeScore=13.3624;MQ=60;MQ0=0;MQRankSum=-1.041;QD=13.88;ReadPosRankSum=1.056;SB=-1675.83	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:134,166:301:99:4178,0,3101:60:99:0.553
chr1	156526431	.	T	.	.	PASS	END=156526443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:60
chr1	156526444	.	T	C	8070.05	PASS	DP=267;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=6.7867;MQ=60;MQ0=0;QD=30.22;SB=-2880.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,266:267:99:8070,602,0:60:99:1.000
chr1	156526445	.	C	.	.	PASS	END=156526474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr1	156526475	.	A	.	.	PASS	END=156526484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	156526485	.	A	.	.	PASS	END=156526487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	156530720	.	A	.	.	PASS	END=156530819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	156531598	.	C	.	.	PASS	END=156531610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	156531611	.	G	.	.	PASS	END=156531669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	156531670	.	T	.	.	PASS	END=156531735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	156531736	.	A	.	.	PASS	END=156531761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:94:60
chr1	156531762	.	G	.	.	PASS	END=156531794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	156531795	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:99:60
chr1	156532369	.	G	.	.	PASS	END=156532404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	156532405	.	A	.	.	PASS	END=156532451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	156532452	.	G	.	.	PASS	END=156532468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	156532924	.	A	.	.	PASS	END=156532953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	156532954	.	A	.	.	PASS	END=156532976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	156532977	.	T	C	7303.01	PASS	DP=255;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=19.0439;MQ=60;MQ0=0;QD=28.64;SB=-3863.78	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,254:255:99:7303,545,0:60:99:1.000
chr1	156532978	.	T	.	.	PASS	END=156533068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr1	156533069	.	C	.	.	PASS	END=156533103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	156533104	.	A	.	.	PASS	END=156533106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	156533343	.	A	.	.	PASS	END=156533367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	156533368	.	T	.	.	PASS	END=156533460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	156533533	.	A	.	.	PASS	END=156533632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	156534396	.	A	.	.	PASS	END=156534420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	156534421	.	G	.	.	PASS	END=156534469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	156534470	.	T	.	.	PASS	END=156534495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	156535808	.	C	.	.	PASS	END=156535831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:82:60
chr1	156535832	.	A	.	.	PASS	END=156535907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	156536180	.	A	.	.	PASS	END=156536203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	156536204	.	T	.	.	PASS	END=156536220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	156536221	.	G	C	4995.81	PASS	DP=174;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.6281;MQ=60;MQ0=0;QD=28.71;SB=-2476.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,174:174:99:4996,370,0:60:99:1.000
chr1	156536222	.	G	.	.	PASS	END=156536250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	156536251	.	T	C	5524.50	PASS	DP=213;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=14.3088;MQ=60;MQ0=0;QD=25.94;SB=-3316.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,212:213:99:5524,409,0:60:99:1.000
chr1	156536252	.	A	.	.	PASS	END=156536324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	156536325	.	A	.	.	PASS	END=156536340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	156539162	.	G	.	.	PASS	END=156539192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	156539193	.	G	.	.	PASS	END=156539261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	156542254	.	G	.	.	PASS	END=156542268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	156542269	.	C	.	.	PASS	END=156542295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	156542296	.	C	.	.	PASS	END=156542353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	156551156	.	T	.	.	LowGQX	END=156551862	GT	./.
chr1	156552022	.	G	.	.	LowGQX	END=156552226	GT	./.
chr1	156552833	.	G	.	.	LowGQX	END=156552835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156552836	.	T	.	.	LowGQX	.	GT	./.
chr1	156552837	.	C	.	.	LowGQX	END=156552850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156552851	.	T	.	.	LowGQX	.	GT	./.
chr1	156552852	.	G	.	.	LowGQX	END=156552962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156553079	.	T	.	.	LowGQX	END=156553223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156553224	.	A	.	.	LowGQX	END=156553242	GT	./.
chr1	156553588	.	G	.	.	LowGQX	END=156553687	GT	./.
chr1	156554668	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156554669	.	A	.	.	LowGQX	END=156554670	GT	./.
chr1	156554671	.	T	.	.	LowGQX	END=156554734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156554735	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	156554736	.	C	.	.	LowGQX	END=156554767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156554916	.	G	.	.	LowGQX	END=156555023	GT	./.
chr1	156555504	.	G	.	.	LowGQX	END=156555593	GT	./.
chr1	156555594	.	G	.	.	LowGQX	END=156555618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156555739	.	A	.	.	LowGQX	END=156555783	GT	./.
chr1	156555784	.	T	.	.	LowGQX	END=156555820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156555821	.	G	.	.	LowGQX	.	GT	./.
chr1	156555822	.	G	.	.	LowGQX	END=156555828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156555829	.	A	.	.	LowGQX	.	GT	./.
chr1	156555830	.	G	.	.	LowGQX	END=156555838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156556252	.	C	.	.	LowGQX	END=156556316	GT	./.
chr1	156556317	.	A	.	.	LowGQX	END=156556320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156556321	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	156556322	.	G	.	.	LowGQX	END=156556351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156561499	.	G	.	.	LowGQX	END=156561532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156561533	.	C	.	.	LowGQX	END=156561846	GT	./.
chr1	156561891	.	A	.	.	LowGQX	.	GT	./.
chr1	156561892	.	G	.	.	LowGQX	END=156561918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156561919	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156561920	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	156561921	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156561922	.	A	.	.	LowGQX	END=156561924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	156561925	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156561926	.	A	.	.	LowGQX	END=156561936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156561937	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	156561938	.	C	.	.	LowGQX	END=156561951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	156561952	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	156561953	.	C	.	.	LowGQX	END=156561954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	156561955	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	156561956	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	156561957	.	C	.	.	LowGQX	END=156561958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	156561959	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	156561960	.	A	.	.	LowGQX	END=156562007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	156562008	.	G	A	14.91	LowGQ;LowGQX	DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.97;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:3.01:45,3,0:60:3:1.000
chr1	156562009	.	G	.	.	LowGQX	END=156562010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	156562011	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	156562012	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	156562013	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156562014	.	A	.	.	LowGQX	END=156562025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156562026	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156562027	.	G	.	.	LowGQX	END=156562032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156562033	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156562034	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	156562035	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	156562036	.	C	.	.	LowGQX	END=156562047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156562048	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156562049	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	156562155	.	A	.	.	LowGQX	END=156562168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156562169	.	A	.	.	LowGQX	.	GT	./.
chr1	156562170	.	C	.	.	LowGQX	END=156562175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156562176	.	T	.	.	LowGQX	.	GT	./.
chr1	156562177	.	G	.	.	LowGQX	END=156562181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156562182	.	G	.	.	LowGQX	.	GT	./.
chr1	156562183	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156562184	.	A	.	.	LowGQX	END=156562269	GT	./.
chr1	156562347	.	A	.	.	LowGQX	END=156562464	GT	./.
chr1	156563198	.	A	.	.	LowGQX	END=156563401	GT	./.
chr1	156563402	.	C	.	.	LowGQX	END=156563421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156563672	.	A	.	.	LowGQX	END=156563878	GT	./.
chr1	156564778	.	T	.	.	LowGQX	END=156564785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156564786	.	C	.	.	LowGQX	END=156564787	GT	./.
chr1	156564788	.	C	.	.	LowGQX	END=156564790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156564791	.	C	.	.	LowGQX	END=156564793	GT	./.
chr1	156564794	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156564795	.	T	.	.	LowGQX	.	GT	./.
chr1	156564796	.	G	.	.	LowGQX	END=156564803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156564804	.	T	.	.	LowGQX	END=156564806	GT	./.
chr1	156564807	.	G	.	.	LowGQX	END=156564808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156564809	.	T	.	.	LowGQX	.	GT	./.
chr1	156564810	.	T	.	.	LowGQX	END=156564828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156564829	.	C	.	.	LowGQX	.	GT	./.
chr1	156564830	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156564831	.	G	.	.	LowGQX	.	GT	./.
chr1	156564832	.	C	.	.	LowGQX	END=156564834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156564835	.	T	.	.	LowGQX	END=156565295	GT	./.
chr1	156565296	.	A	.	.	LowGQX	END=156565320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565321	.	T	.	.	LowGQX	.	GT	./.
chr1	156565322	.	C	.	.	LowGQX	END=156565371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565372	.	T	.	.	LowGQX	.	GT	./.
chr1	156565373	.	C	.	.	LowGQX	END=156565384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565385	.	T	.	.	LowGQX	.	GT	./.
chr1	156565386	.	T	.	.	LowGQX	END=156565404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156565405	.	C	.	.	LowGQX	.	GT	./.
chr1	156565406	.	T	.	.	LowGQX	END=156565412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156565413	.	C	.	.	LowGQX	.	GT	./.
chr1	156565414	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156565415	.	G	.	.	LowGQX	.	GT	./.
chr1	156565416	.	C	.	.	LowGQX	END=156565470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565471	.	T	.	.	LowGQX	.	GT	./.
chr1	156565472	.	C	.	.	LowGQX	END=156565546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565547	.	C	.	.	LowGQX	.	GT	./.
chr1	156565548	.	A	.	.	LowGQX	END=156565550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565551	.	G	.	.	LowGQX	.	GT	./.
chr1	156565552	.	T	.	.	LowGQX	END=156565554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565555	.	T	.	.	LowGQX	.	GT	./.
chr1	156565556	.	G	.	.	LowGQX	END=156565559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565560	.	T	.	.	LowGQX	.	GT	./.
chr1	156565561	.	T	.	.	LowGQX	END=156565567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565568	.	G	.	.	LowGQX	END=156565569	GT	./.
chr1	156565570	.	G	.	.	LowGQX	END=156565584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565585	.	T	.	.	LowGQX	.	GT	./.
chr1	156565586	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565587	.	C	.	.	LowGQX	.	GT	./.
chr1	156565588	.	T	.	.	LowGQX	END=156565589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565590	.	G	.	.	LowGQX	END=156565591	GT	./.
chr1	156565592	.	C	.	.	LowGQX	END=156565602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565603	.	G	.	.	LowGQX	.	GT	./.
chr1	156565604	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565605	.	A	.	.	LowGQX	.	GT	./.
chr1	156565606	.	A	.	.	LowGQX	END=156565611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565612	.	G	.	.	LowGQX	.	GT	./.
chr1	156565613	.	C	.	.	LowGQX	END=156565624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565625	.	T	.	.	LowGQX	.	GT	./.
chr1	156565626	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565627	.	C	.	.	LowGQX	END=156565628	GT	./.
chr1	156565629	.	A	.	.	LowGQX	END=156565631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565632	.	A	.	.	LowGQX	END=156565633	GT	./.
chr1	156565634	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565635	.	G	.	.	LowGQX	.	GT	./.
chr1	156565636	.	G	.	.	LowGQX	END=156565639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565640	.	C	.	.	LowGQX	.	GT	./.
chr1	156565641	.	C	.	.	LowGQX	END=156565643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565849	.	C	.	.	LowGQX	END=156565858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565859	.	T	.	.	LowGQX	.	GT	./.
chr1	156565860	.	G	.	.	LowGQX	END=156565866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565867	.	A	.	.	LowGQX	.	GT	./.
chr1	156565868	.	C	.	.	LowGQX	END=156565871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565872	.	C	.	.	LowGQX	.	GT	./.
chr1	156565873	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565874	.	T	.	.	LowGQX	.	GT	./.
chr1	156565875	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565876	.	T	.	.	LowGQX	.	GT	./.
chr1	156565877	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565878	.	T	.	.	LowGQX	.	GT	./.
chr1	156565879	.	G	.	.	LowGQX	END=156565880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156565881	.	T	.	.	LowGQX	END=156565948	GT	./.
chr1	156566175	.	T	.	.	LowGQX	END=156566274	GT	./.
chr1	156567601	.	C	.	.	LowGQX	END=156567641	GT	./.
chr1	156567642	.	C	.	.	LowGQX	END=156567746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156567747	.	C	.	.	LowGQX	.	GT	./.
chr1	156567748	.	A	.	.	LowGQX	END=156567749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156567750	.	A	.	.	LowGQX	.	GT	./.
chr1	156567751	.	C	.	.	LowGQX	END=156567769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156567770	.	C	.	.	LowGQX	.	GT	./.
chr1	156567771	.	C	.	.	LowGQX	END=156567792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156567793	.	A	.	.	LowGQX	END=156567807	GT	./.
chr1	156567808	.	T	.	.	LowGQX	END=156567810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156567811	.	C	.	.	LowGQX	.	GT	./.
chr1	156567812	.	C	.	.	LowGQX	END=156567879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156567880	.	T	.	.	LowGQX	.	GT	./.
chr1	156567881	.	C	.	.	LowGQX	END=156567915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156568016	.	T	.	.	LowGQX	END=156568115	GT	./.
chr1	156568200	.	C	.	.	LowGQX	END=156568299	GT	./.
chr1	156568697	.	T	.	.	LowGQX	END=156568849	GT	./.
chr1	156571166	.	C	.	.	LowGQX	END=156571265	GT	./.
chr1	156593276	.	C	.	.	LowGQX	END=156593301	GT	./.
chr1	156593302	.	T	.	.	LowGQX	END=156593346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156593347	.	A	.	.	LowGQX	.	GT	./.
chr1	156593348	.	C	.	.	LowGQX	END=156593372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156593373	.	A	.	.	LowGQX	.	GT	./.
chr1	156593374	.	C	.	.	LowGQX	END=156593375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156593597	.	A	.	.	LowGQX	END=156593600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156593601	.	T	.	.	LowGQX	.	GT	./.
chr1	156593602	.	C	.	.	LowGQX	END=156593604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156593605	.	A	.	.	LowGQX	.	GT	./.
chr1	156593606	.	C	.	.	LowGQX	END=156593622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156593623	.	T	.	.	LowGQX	.	GT	./.
chr1	156593624	.	C	.	.	LowGQX	END=156593625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156593626	.	T	.	.	LowGQX	.	GT	./.
chr1	156593627	.	G	.	.	LowGQX	END=156593651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156593652	.	T	.	.	LowGQX	.	GT	./.
chr1	156593653	.	C	.	.	LowGQX	END=156593688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156593689	.	T	.	.	LowGQX	END=156593954	GT	./.
chr1	156594141	.	A	.	.	LowGQX	END=156594261	GT	./.
chr1	156594380	.	C	.	.	LowGQX	END=156594577	GT	./.
chr1	156594881	.	T	.	.	LowGQX	END=156595069	GT	./.
chr1	156595070	.	C	.	.	LowGQX	END=156595115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156595116	.	T	.	.	LowGQX	END=156595117	GT	./.
chr1	156595118	.	T	.	.	LowGQX	END=156595122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156595123	.	T	.	.	LowGQX	END=156595124	GT	./.
chr1	156595125	.	C	.	.	LowGQX	END=156595135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156595136	.	A	.	.	LowGQX	.	GT	./.
chr1	156595137	.	A	.	.	LowGQX	END=156595139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156595140	.	G	.	.	LowGQX	.	GT	./.
chr1	156595141	.	G	.	.	LowGQX	END=156595142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156595143	.	A	.	.	LowGQX	.	GT	./.
chr1	156595144	.	G	.	.	LowGQX	END=156595146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156595147	.	T	.	.	LowGQX	.	GT	./.
chr1	156595148	.	A	.	.	LowGQX	END=156595152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156595153	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156595154	.	C	.	.	LowGQX	END=156595164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156595165	.	G	.	.	LowGQX	.	GT	./.
chr1	156595166	.	C	.	.	LowGQX	END=156595174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156595175	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156595176	.	G	.	.	LowGQX	END=156595178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156615843	.	C	.	.	LowGQX	END=156615852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156615853	.	C	.	.	LowGQX	.	GT	./.
chr1	156615854	.	A	.	.	LowGQX	END=156615864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156615865	.	C	.	.	LowGQX	.	GT	./.
chr1	156615866	.	C	.	.	LowGQX	END=156615879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156615880	.	C	.	.	LowGQX	END=156615942	GT	./.
chr1	156616591	.	A	.	.	LowGQX	END=156616969	GT	./.
chr1	156617298	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156617299	.	G	.	.	LowGQX	.	GT	./.
chr1	156617300	.	G	.	.	LowGQX	END=156617301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156617302	.	G	.	.	LowGQX	.	GT	./.
chr1	156617303	.	T	.	.	LowGQX	END=156617320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156617321	.	A	.	.	LowGQX	.	GT	./.
chr1	156617322	.	G	.	.	LowGQX	END=156617329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156617330	.	C	.	.	LowGQX	.	GT	./.
chr1	156617331	.	C	.	.	LowGQX	END=156617332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156617333	.	G	.	.	LowGQX	.	GT	./.
chr1	156617334	.	C	.	.	LowGQX	END=156617337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156617338	.	G	.	.	LowGQX	.	GT	./.
chr1	156617339	.	C	.	.	LowGQX	END=156617344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156617345	.	C	.	.	LowGQX	.	GT	./.
chr1	156617346	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156617347	.	T	.	.	LowGQX	END=156617348	GT	./.
chr1	156617349	.	T	.	.	LowGQX	END=156617353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156617354	.	G	.	.	LowGQX	.	GT	./.
chr1	156617355	.	G	.	.	LowGQX	END=156617362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156617363	.	A	.	.	LowGQX	END=156617364	GT	./.
chr1	156617365	.	G	.	.	LowGQX	END=156617368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156617369	.	G	.	.	LowGQX	.	GT	./.
chr1	156617370	.	T	.	.	LowGQX	END=156617371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156617372	.	C	.	.	LowGQX	.	GT	./.
chr1	156617373	.	C	.	.	LowGQX	END=156617377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156617378	.	T	.	.	LowGQX	.	GT	./.
chr1	156617379	.	T	.	.	LowGQX	END=156617381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156617382	.	A	.	.	LowGQX	.	GT	./.
chr1	156617383	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156617384	.	C	.	.	LowGQX	.	GT	./.
chr1	156617385	.	C	.	.	LowGQX	END=156617393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156617394	.	C	.	.	LowGQX	END=156617400	GT	./.
chr1	156617401	.	G	.	.	LowGQX	END=156617470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156617471	.	T	.	.	LowGQX	.	GT	./.
chr1	156617472	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	156617473	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	156617474	.	G	.	.	LowGQX	END=156617476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	156617612	.	G	.	.	LowGQX	END=156617711	GT	./.
chr1	156617773	.	A	.	.	LowGQX	END=156617904	GT	./.
chr1	156618358	.	A	.	.	LowGQX	END=156618655	GT	./.
chr1	156619652	.	G	.	.	LowGQX	END=156619751	GT	./.
chr1	156621246	.	A	.	.	LowGQX	END=156621248	GT	./.
chr1	156621249	.	C	.	.	LowGQX	END=156621274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156621275	.	A	.	.	LowGQX	.	GT	./.
chr1	156621276	.	G	.	.	LowGQX	END=156621339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156621340	.	A	.	.	LowGQX	.	GT	./.
chr1	156621341	.	C	.	.	LowGQX	END=156621378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156621379	.	A	.	.	LowGQX	.	GT	./.
chr1	156621380	.	G	.	.	LowGQX	END=156621387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156621388	.	C	.	.	LowGQX	.	GT	./.
chr1	156621389	.	G	.	.	LowGQX	END=156621451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156621452	.	A	.	.	LowGQX	.	GT	./.
chr1	156621453	.	C	.	.	LowGQX	END=156621455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156621456	.	A	.	.	LowGQX	.	GT	./.
chr1	156621457	.	G	.	.	LowGQX	END=156621473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156621474	.	G	.	.	LowGQX	END=156621483	GT	./.
chr1	156622038	.	A	.	.	LowGQX	END=156622570	GT	./.
chr1	156622571	.	C	.	.	LowGQX	END=156622645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156622646	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	156622647	.	C	.	.	LowGQX	END=156622674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156622675	.	C	.	.	LowGQX	END=156622760	GT	./.
chr1	156626012	.	G	.	.	LowGQX	END=156626019	GT	./.
chr1	156626020	.	G	.	.	LowGQX	END=156626054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156626055	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156626056	.	C	.	.	LowGQX	END=156626087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156626088	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156626089	.	G	.	.	LowGQX	END=156626093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156626094	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156626095	.	G	.	.	LowGQX	END=156626127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156626128	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156626129	.	A	.	.	LowGQX	END=156626148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156626149	.	T	.	.	LowGQX	END=156626222	GT	./.
chr1	156626223	.	C	.	.	LowGQX	END=156626230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156626728	.	A	.	.	LowGQX	END=156626747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156626748	.	C	.	.	LowGQX	END=156626890	GT	./.
chr1	156627405	.	G	.	.	LowGQX	END=156627409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156627410	.	G	.	.	LowGQX	END=156627411	GT	./.
chr1	156627412	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156627413	.	G	.	.	LowGQX	.	GT	./.
chr1	156627414	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156627415	.	A	.	.	LowGQX	.	GT	./.
chr1	156627416	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156627417	.	G	.	.	LowGQX	.	GT	./.
chr1	156627418	.	G	.	.	LowGQX	END=156627420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156627421	.	G	.	.	LowGQX	.	GT	./.
chr1	156627422	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627423	.	C	.	5.68	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr1	156627424	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627425	.	T	.	.	LowGQX	.	GT	./.
chr1	156627426	.	C	.	.	LowGQX	END=156627428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627429	.	C	.	.	LowGQX	.	GT	./.
chr1	156627430	.	T	.	.	LowGQX	END=156627431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627432	.	G	.	.	LowGQX	.	GT	./.
chr1	156627433	.	C	.	.	LowGQX	END=156627434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627435	.	G	.	5.68	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr1	156627436	.	C	.	.	LowGQX	.	GT	./.
chr1	156627437	.	T	.	.	LowGQX	END=156627439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627440	.	G	.	.	LowGQX	.	GT	./.
chr1	156627441	.	C	A	7.08	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=3.54;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,1:2:3.01:36,3,0:60:3:0.500
chr1	156627442	.	T	.	.	LowGQX	END=156627443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627444	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156627445	.	C	.	.	LowGQX	END=156627450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627451	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156627452	.	C	.	.	LowGQX	.	GT	./.
chr1	156627453	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627454	.	T	.	.	LowGQX	.	GT	./.
chr1	156627455	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627456	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156627457	.	G	.	.	LowGQX	END=156627461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627462	.	C	.	.	LowGQX	.	GT	./.
chr1	156627463	.	C	.	.	LowGQX	END=156627467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627468	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156627469	.	C	.	.	LowGQX	.	GT	./.
chr1	156627470	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627471	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156627472	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627473	.	A	.	.	LowGQX	.	GT	./.
chr1	156627474	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	156627475	.	C	.	.	LowGQX	END=156627479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627480	.	G	.	.	LowGQX	.	GT	./.
chr1	156627481	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156627482	.	A	.	.	LowGQX	END=156627483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627484	.	C	.	.	LowGQX	.	GT	./.
chr1	156627485	.	A	.	.	LowGQX	END=156627486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627487	.	T	.	.	LowGQX	END=156627488	GT	./.
chr1	156627489	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627490	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156627491	.	T	.	.	LowGQX	END=156627497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627498	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156627499	.	A	.	.	LowGQX	.	GT	./.
chr1	156627500	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156627501	.	C	.	.	LowGQX	.	GT	./.
chr1	156627502	.	G	.	.	LowGQX	END=156627503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156627504	.	C	.	.	LowGQX	.	GT	./.
chr1	156627505	.	A	.	.	LowGQX	END=156627506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156627507	.	G	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	156627508	.	A	.	.	LowGQX	.	GT	./.
chr1	156627509	.	C	.	.	LowGQX	END=156627511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156627512	.	T	.	.	LowGQX	.	GT	./.
chr1	156627513	.	C	.	.	LowGQX	END=156627517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156627518	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	156627519	.	C	.	.	LowGQX	END=156627520	GT	./.
chr1	156627521	.	A	.	.	LowGQX	END=156627530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156627531	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	156627532	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156627533	.	C	.	.	LowGQX	.	GT	./.
chr1	156627534	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156627535	.	G	.	.	LowGQX	END=156627536	GT	./.
chr1	156627537	.	T	.	.	LowGQX	END=156627539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156627540	.	C	.	.	LowGQX	.	GT	./.
chr1	156627541	.	G	.	.	LowGQX	END=156627544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156627545	.	C	.	.	LowGQX	.	GT	./.
chr1	156627546	.	C	.	.	LowGQX	END=156627547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156627548	.	T	.	.	LowGQX	.	GT	./.
chr1	156627549	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156627550	.	G	.	.	LowGQX	.	GT	./.
chr1	156627551	.	T	.	.	LowGQX	END=156627552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156627553	.	A	.	.	LowGQX	.	GT	./.
chr1	156627554	.	G	.	.	LowGQX	END=156627555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156627556	.	G	.	.	LowGQX	.	GT	./.
chr1	156627557	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156627558	.	C	.	.	LowGQX	.	GT	./.
chr1	156627917	.	A	.	.	LowGQX	END=156628065	GT	./.
chr1	156628333	.	A	.	.	LowGQX	END=156628363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628364	.	C	.	.	LowGQX	END=156628527	GT	./.
chr1	156628767	.	A	.	.	LowGQX	END=156628807	GT	./.
chr1	156628808	.	G	.	.	LowGQX	END=156628812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628813	.	C	.	.	LowGQX	.	GT	./.
chr1	156628814	.	C	.	.	LowGQX	END=156628827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628828	.	C	.	.	LowGQX	.	GT	./.
chr1	156628829	.	T	.	.	LowGQX	END=156628834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628835	.	C	.	.	LowGQX	.	GT	./.
chr1	156628836	.	A	.	.	LowGQX	END=156628839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628840	.	G	.	.	LowGQX	.	GT	./.
chr1	156628841	.	A	.	.	LowGQX	END=156628842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628843	.	G	.	.	LowGQX	.	GT	./.
chr1	156628844	.	A	.	.	LowGQX	END=156628845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628846	.	C	.	.	LowGQX	.	GT	./.
chr1	156628847	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628848	.	A	.	.	LowGQX	.	GT	./.
chr1	156628849	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628850	.	A	.	.	LowGQX	.	GT	./.
chr1	156628851	.	A	.	.	LowGQX	END=156628855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628856	.	G	.	.	LowGQX	.	GT	./.
chr1	156628857	.	T	.	.	LowGQX	END=156628864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628865	.	G	.	.	LowGQX	END=156628866	GT	./.
chr1	156628867	.	C	.	.	LowGQX	END=156628871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628872	.	G	.	.	LowGQX	.	GT	./.
chr1	156628873	.	G	.	.	LowGQX	END=156628878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628879	.	T	.	.	LowGQX	.	GT	./.
chr1	156628880	.	G	.	.	LowGQX	END=156628881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628882	.	A	.	.	LowGQX	END=156628883	GT	./.
chr1	156628884	.	G	.	.	LowGQX	END=156628889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628890	.	G	.	.	LowGQX	.	GT	./.
chr1	156628891	.	T	.	.	LowGQX	END=156628895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628896	.	C	.	.	LowGQX	.	GT	./.
chr1	156628897	.	C	.	.	LowGQX	END=156628898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628899	.	C	.	.	LowGQX	.	GT	./.
chr1	156628900	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628901	.	C	.	.	LowGQX	END=156628902	GT	./.
chr1	156628903	.	T	.	.	LowGQX	END=156628904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628905	.	C	.	.	LowGQX	END=156628906	GT	./.
chr1	156628907	.	G	.	.	LowGQX	END=156628912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628913	.	T	.	.	LowGQX	.	GT	./.
chr1	156628914	.	G	.	.	LowGQX	END=156628916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628917	.	A	.	.	LowGQX	.	GT	./.
chr1	156628918	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628919	.	G	.	.	LowGQX	.	GT	./.
chr1	156628920	.	T	.	.	LowGQX	END=156628924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156628925	.	A	.	.	LowGQX	END=156628927	GT	./.
chr1	156628928	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639112	.	T	.	.	LowGQX	END=156639314	GT	./.
chr1	156639315	.	G	.	.	LowGQX	END=156639516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639517	.	T	.	.	LowGQX	END=156639542	GT	./.
chr1	156639543	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639544	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	156639545	.	C	.	.	LowGQX	END=156639561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639562	.	A	.	.	LowGQX	.	GT	./.
chr1	156639563	.	A	.	.	LowGQX	END=156639595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639596	.	A	.	.	LowGQX	.	GT	./.
chr1	156639597	.	A	.	.	LowGQX	END=156639601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639602	.	A	.	.	LowGQX	.	GT	./.
chr1	156639603	.	C	.	.	LowGQX	END=156639623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639624	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	156639625	.	G	.	.	LowGQX	END=156639648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639649	.	C	.	.	LowGQX	.	GT	./.
chr1	156639650	.	C	.	.	LowGQX	END=156639651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639652	.	A	.	.	LowGQX	.	GT	./.
chr1	156639653	.	C	.	.	LowGQX	END=156639667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639668	.	C	.	.	LowGQX	.	GT	./.
chr1	156639669	.	C	.	.	LowGQX	END=156639670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639671	.	A	.	.	LowGQX	END=156639679	GT	./.
chr1	156639680	.	C	.	.	LowGQX	END=156639683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639684	.	T	.	.	LowGQX	.	GT	./.
chr1	156639685	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639686	.	G	.	.	LowGQX	.	GT	./.
chr1	156639687	.	C	.	.	LowGQX	END=156639704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639705	.	A	.	.	LowGQX	.	GT	./.
chr1	156639706	.	T	.	.	LowGQX	END=156639713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639714	.	T	.	.	LowGQX	.	GT	./.
chr1	156639715	.	C	.	.	LowGQX	END=156639744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639745	.	A	.	.	LowGQX	END=156639746	GT	./.
chr1	156639747	.	C	.	.	LowGQX	END=156639749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639750	.	A	.	.	LowGQX	.	GT	./.
chr1	156639751	.	T	.	.	LowGQX	END=156639772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639773	.	A	.	.	LowGQX	.	GT	./.
chr1	156639774	.	G	.	.	LowGQX	END=156639783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639784	.	T	.	.	LowGQX	.	GT	./.
chr1	156639785	.	C	.	.	LowGQX	END=156639830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156639831	.	A	.	.	LowGQX	END=156640550	GT	./.
chr1	156640551	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156640552	.	T	.	.	LowGQX	.	GT	./.
chr1	156640553	.	C	.	.	LowGQX	END=156640594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156640595	.	A	.	.	LowGQX	END=156640596	GT	./.
chr1	156640597	.	C	.	.	LowGQX	END=156640613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156640614	.	T	.	.	LowGQX	.	GT	./.
chr1	156640615	.	G	.	.	LowGQX	END=156640617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156640618	.	T	.	.	LowGQX	.	GT	./.
chr1	156640619	.	C	.	.	LowGQX	END=156640623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156640624	.	A	.	.	LowGQX	.	GT	./.
chr1	156640625	.	C	.	.	LowGQX	END=156640628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156640629	.	T	.	.	LowGQX	END=156640630	GT	./.
chr1	156640631	.	C	.	.	LowGQX	END=156640646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156640647	.	T	.	.	LowGQX	.	GT	./.
chr1	156640648	.	G	.	.	LowGQX	END=156640651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156640652	.	C	.	.	LowGQX	END=156640659	GT	./.
chr1	156640660	.	C	.	.	LowGQX	END=156640661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156640662	.	T	.	.	LowGQX	.	GT	./.
chr1	156640663	.	C	.	.	LowGQX	END=156640665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156640666	.	A	.	.	LowGQX	.	GT	./.
chr1	156640667	.	C	.	.	LowGQX	END=156640677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156640678	.	G	.	.	LowGQX	.	GT	./.
chr1	156640679	.	G	.	.	LowGQX	END=156640682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156640683	.	T	.	.	LowGQX	.	GT	./.
chr1	156640684	.	G	.	.	LowGQX	END=156640697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156640698	.	A	.	.	LowGQX	.	GT	./.
chr1	156640699	.	G	.	.	LowGQX	END=156640702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156640703	.	A	.	.	LowGQX	.	GT	./.
chr1	156640704	.	C	.	.	LowGQX	END=156640706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156640707	.	A	.	.	LowGQX	.	GT	./.
chr1	156640708	.	C	.	.	LowGQX	END=156640711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156640712	.	T	.	.	LowGQX	END=156640713	GT	./.
chr1	156640714	.	G	.	.	LowGQX	END=156640834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156640835	.	C	.	.	LowGQX	.	GT	./.
chr1	156640836	.	C	.	.	LowGQX	END=156640890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156640891	.	C	.	.	LowGQX	.	GT	./.
chr1	156640892	.	T	.	.	LowGQX	END=156640901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156640902	.	A	.	.	LowGQX	END=156642084	GT	./.
chr1	156642085	.	T	.	.	LowGQX	END=156642180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156642181	.	A	.	.	LowGQX	.	GT	./.
chr1	156642182	.	C	.	.	LowGQX	END=156642216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156642217	.	C	.	.	LowGQX	.	GT	./.
chr1	156642218	.	T	.	.	LowGQX	END=156642233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156642234	.	G	.	.	LowGQX	END=156642278	GT	./.
chr1	156642279	.	T	.	.	LowGQX	END=156642427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156642428	.	T	.	.	LowGQX	END=156642607	GT	./.
chr1	156642608	.	G	.	.	LowGQX	END=156642761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156642762	.	T	.	.	LowGQX	END=156642999	GT	./.
chr1	156643233	.	C	.	.	LowGQX	END=156643332	GT	./.
chr1	156645006	.	A	.	.	LowGQX	END=156645046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156645047	.	T	.	.	LowGQX	END=156645134	GT	./.
chr1	156646261	.	T	.	.	LowGQX	END=156647061	GT	./.
chr1	156669794	.	G	.	.	LowGQX	END=156669893	GT	./.
chr1	156670332	.	A	.	.	LowGQX	END=156670338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156670339	.	T	.	.	LowGQX	.	GT	./.
chr1	156670340	.	C	.	.	LowGQX	END=156670353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156670354	.	T	.	.	LowGQX	END=156670452	GT	./.
chr1	156670664	.	A	.	.	LowGQX	END=156670846	GT	./.
chr1	156675154	.	C	.	.	LowGQX	END=156675253	GT	./.
chr1	156693139	.	C	.	.	LowGQX	END=156693256	GT	./.
chr1	156693938	.	A	.	.	LowGQX	END=156694142	GT	./.
chr1	156696696	.	A	.	.	LowGQX	END=156696724	GT	./.
chr1	156696725	.	G	.	.	LowGQX	END=156696845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156696846	.	C	.	.	LowGQX	END=156697446	GT	./.
chr1	156698895	.	G	.	.	LowGQX	END=156699054	GT	./.
chr1	156701781	.	A	.	.	LowGQX	END=156701909	GT	./.
chr1	156702071	.	A	.	.	LowGQX	END=156702146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156702147	.	C	.	.	LowGQX	.	GT	./.
chr1	156702148	.	T	.	.	LowGQX	END=156702267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156702759	.	T	.	.	LowGQX	END=156702858	GT	./.
chr1	156703167	.	A	.	.	LowGQX	END=156703314	GT	./.
chr1	156703799	.	A	.	.	LowGQX	END=156703984	GT	./.
chr1	156703985	.	G	.	.	LowGQX	END=156704026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156704027	.	T	.	.	LowGQX	.	GT	./.
chr1	156704028	.	G	.	.	LowGQX	END=156704197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156704198	.	T	.	.	LowGQX	END=156704287	GT	./.
chr1	156705515	.	A	.	.	LowGQX	END=156705703	GT	./.
chr1	156706422	.	A	.	.	LowGQX	END=156706547	GT	./.
chr1	156707188	.	G	.	.	LowGQX	END=156707262	GT	./.
chr1	156707263	.	G	.	.	LowGQX	END=156707328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156707436	.	A	.	.	LowGQX	END=156707570	GT	./.
chr1	156707821	.	G	.	.	LowGQX	END=156707928	GT	./.
chr1	156708133	.	A	.	.	LowGQX	END=156708232	GT	./.
chr1	156708292	.	A	.	.	LowGQX	END=156708325	GT	./.
chr1	156708326	.	G	.	.	LowGQX	END=156708396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156708397	.	T	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	156708398	.	C	.	.	LowGQX	END=156708399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156708400	.	T	.	.	LowGQX	END=156708505	GT	./.
chr1	156713135	.	T	.	.	LowGQX	END=156713224	GT	./.
chr1	156713225	.	C	.	.	LowGQX	END=156713260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156713261	.	T	.	.	LowGQX	END=156713262	GT	./.
chr1	156713263	.	G	.	.	LowGQX	END=156713272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156713273	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156713274	.	G	.	.	LowGQX	END=156713276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156713277	.	T	.	.	LowGQX	.	GT	./.
chr1	156713278	.	T	.	.	LowGQX	END=156713284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156713285	.	G	.	.	LowGQX	END=156713286	GT	./.
chr1	156713287	.	G	.	.	LowGQX	END=156713288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156713289	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156713290	.	C	.	.	LowGQX	END=156713293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156713294	.	G	.	.	LowGQX	.	GT	./.
chr1	156713368	.	G	.	.	LowGQX	END=156713370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156713371	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156713372	.	T	.	.	LowGQX	END=156713373	GT	./.
chr1	156713374	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156713375	.	T	.	.	LowGQX	.	GT	./.
chr1	156713376	.	C	.	.	LowGQX	END=156713377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156713378	.	T	.	.	LowGQX	.	GT	./.
chr1	156713379	.	C	.	.	LowGQX	END=156713381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156713382	.	C	.	.	LowGQX	.	GT	./.
chr1	156713383	.	T	.	.	LowGQX	END=156713395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156713396	.	G	.	.	LowGQX	.	GT	./.
chr1	156713397	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156713398	.	C	.	.	LowGQX	.	GT	./.
chr1	156713399	.	G	.	.	LowGQX	END=156713402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156713403	.	C	.	.	LowGQX	.	GT	./.
chr1	156713404	.	C	.	.	LowGQX	END=156713411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156713412	.	C	.	.	LowGQX	END=156713424	GT	./.
chr1	156713425	.	G	.	.	LowGQX	END=156713511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156713512	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	156713513	.	T	.	.	LowGQX	END=156713709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156713710	.	A	.	.	LowGQX	.	GT	./.
chr1	156713711	.	G	.	.	LowGQX	END=156713737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156713953	.	A	.	.	LowGQX	END=156714010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156714011	.	C	.	.	LowGQX	.	GT	./.
chr1	156714012	.	T	.	.	LowGQX	END=156714085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156714086	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	156714087	.	T	.	.	LowGQX	END=156714098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156714099	.	C	.	.	LowGQX	END=156714100	GT	./.
chr1	156714101	.	C	.	.	LowGQX	END=156714105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156714106	.	T	.	.	LowGQX	.	GT	./.
chr1	156714107	.	C	.	.	LowGQX	END=156714111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156714112	.	T	.	.	LowGQX	.	GT	./.
chr1	156714113	.	C	.	.	LowGQX	END=156714124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156714125	.	T	.	.	LowGQX	.	GT	./.
chr1	156714126	.	C	.	.	LowGQX	END=156714161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156714218	.	A	.	.	LowGQX	END=156714377	GT	./.
chr1	156714798	.	A	.	.	LowGQX	END=156714940	GT	./.
chr1	156715078	.	C	.	.	LowGQX	END=156715177	GT	./.
chr1	156721073	.	T	.	.	LowGQX	END=156721228	GT	./.
chr1	156721813	.	C	.	.	LowGQX	END=156721912	GT	./.
chr1	156722020	.	C	.	.	LowGQX	END=156722155	GT	./.
chr1	156737562	.	C	.	.	LowGQX	END=156737670	GT	./.
chr1	156737671	.	G	.	.	LowGQX	END=156737689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156737690	.	C	.	.	LowGQX	.	GT	./.
chr1	156737691	.	C	.	.	LowGQX	END=156737721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156737722	.	G	.	.	LowGQX	.	GT	./.
chr1	156737723	.	C	.	.	LowGQX	END=156737731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156737732	.	A	.	.	LowGQX	END=156738041	GT	./.
chr1	156752048	.	C	.	.	LowGQX	END=156752147	GT	./.
chr1	156756398	.	A	.	.	LowGQX	END=156756968	GT	./.
chr1	156760797	.	G	.	.	LowGQX	END=156760956	GT	./.
chr1	156761487	.	A	.	.	LowGQX	END=156761586	GT	./.
chr1	156764455	.	A	.	.	LowGQX	END=156764539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156764540	.	G	.	.	LowGQX	END=156764579	GT	./.
chr1	156764580	.	A	.	.	LowGQX	END=156764581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156764582	.	C	.	.	LowGQX	.	GT	./.
chr1	156764583	.	A	.	.	LowGQX	END=156764592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156764593	.	T	.	.	LowGQX	END=156764594	GT	./.
chr1	156764595	.	A	.	.	LowGQX	END=156764596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156764597	.	C	.	.	LowGQX	END=156764598	GT	./.
chr1	156764599	.	A	.	.	LowGQX	END=156764602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156767051	.	G	.	.	LowGQX	END=156767052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156767053	.	T	.	.	LowGQX	END=156767054	GT	./.
chr1	156767055	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156767056	.	C	.	.	LowGQX	.	GT	./.
chr1	156767057	.	T	.	.	LowGQX	END=156767084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156767085	.	A	.	.	LowGQX	END=156767086	GT	./.
chr1	156767087	.	C	.	.	LowGQX	END=156767097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156767098	.	C	.	.	LowGQX	END=156767150	GT	./.
chr1	156770160	.	C	.	.	LowGQX	END=156770227	GT	./.
chr1	156770228	.	G	.	.	LowGQX	END=156770259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156776947	.	C	.	.	LowGQX	END=156776983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156776984	.	C	.	.	LowGQX	END=156777139	GT	./.
chr1	156778993	.	A	.	.	LowGQX	END=156779019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	156779020	.	C	.	.	LowGQX	END=156779057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156779058	.	T	.	.	LowGQX	.	GT	./.
chr1	156779059	.	A	.	.	LowGQX	END=156779099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156779100	.	T	.	.	LowGQX	END=156779284	GT	./.
chr1	156779451	.	A	.	.	LowGQX	END=156779630	GT	./.
chr1	156783638	.	A	.	.	LowGQX	END=156783712	GT	./.
chr1	156783713	.	T	.	.	LowGQX	END=156783715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156783716	.	T	.	.	LowGQX	.	GT	./.
chr1	156783717	.	G	.	.	LowGQX	END=156783718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156783719	.	A	.	.	LowGQX	.	GT	./.
chr1	156783720	.	G	.	.	LowGQX	END=156783723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156783724	.	C	.	.	LowGQX	.	GT	./.
chr1	156783725	.	G	.	.	LowGQX	END=156783810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156783995	.	A	.	.	LowGQX	END=156784116	GT	./.
chr1	156784827	.	A	.	.	LowGQX	END=156785015	GT	./.
chr1	156785571	.	A	.	.	PASS	END=156785593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	156785594	.	G	.	.	PASS	END=156785616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	156785617	.	G	A	1473.23	PASS	BaseQRankSum=2.027;DP=119;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=1.383;QD=12.38;ReadPosRankSum=0.115;SB=-907.33	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:51,68:119:99:1503,0,1225:60:99:0.571
chr1	156785618	.	G	.	.	PASS	END=156785681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	156785793	.	C	.	.	PASS	END=156785805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:72:60
chr1	156785806	.	A	.	.	PASS	END=156785809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	156785810	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:24:60
chr1	156785811	.	A	.	.	PASS	END=156785814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	156785815	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	156785816	.	C	.	.	PASS	END=156785853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	156785854	.	T	.	.	PASS	END=156785870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	156785871	.	G	.	.	PASS	END=156785876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	156785877	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:36:60
chr1	156785878	.	C	.	.	PASS	END=156785888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:39:60
chr1	156785889	.	G	.	.	PASS	END=156785892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	156786374	.	T	.	.	LowGQX	END=156786424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156786425	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156786426	.	T	.	.	LowGQX	END=156786533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156810663	.	C	.	.	LowGQX	END=156810716	GT	./.
chr1	156810717	.	G	.	.	LowGQX	END=156810898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156811184	.	A	.	.	LowGQX	END=156811322	GT	./.
chr1	156811455	.	A	.	.	LowGQX	END=156811516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156811517	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156811518	.	C	.	.	LowGQX	END=156811564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156811565	.	A	.	.	LowGQX	END=156811613	GT	./.
chr1	156811614	.	G	.	.	LowGQX	END=156811628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156811629	.	A	.	.	LowGQX	.	GT	./.
chr1	156811630	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156811631	.	C	.	.	LowGQX	.	GT	./.
chr1	156811632	.	C	.	.	LowGQX	END=156811660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156811822	.	G	.	.	PASS	END=156811833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	156811834	.	T	.	.	PASS	END=156811845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	156811846	.	G	.	.	PASS	END=156811861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	156811862	.	C	.	.	PASS	END=156811894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	156811895	.	C	.	.	PASS	END=156811908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	156811909	.	A	.	.	PASS	END=156811933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	156811934	.	C	.	.	PASS	END=156812048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	156812049	.	G	.	.	PASS	END=156812072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	156812073	.	A	.	.	PASS	END=156812075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	156812188	.	A	.	.	LowGQX	END=156812195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	156812196	.	C	.	.	LowGQX	END=156812197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	156812198	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:60
chr1	156812199	.	A	.	.	LowGQX	END=156812201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	156812202	.	C	.	.	LowGQX	END=156812204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	156812205	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	156812206	.	A	.	.	LowGQX	END=156812207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	156812208	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	156812209	.	G	.	.	LowGQX	END=156812212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	156812213	.	G	.	.	LowGQX	END=156812216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	156812217	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	156812218	.	T	.	.	LowGQX	END=156812223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	156812224	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	156812225	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	156812226	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	156812227	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	156812228	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	156812229	.	G	.	.	LowGQX	END=156812232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	156812233	.	C	.	.	LowGQX	END=156812235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	156812236	.	C	.	.	LowGQX	END=156812239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	156812240	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	156812241	.	C	.	.	LowGQX	END=156812245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	156812246	.	A	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	156812247	.	C	.	.	LowGQX	END=156812251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	156812252	.	T	.	.	LowGQX	END=156812253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	156812254	.	A	.	.	LowGQX	END=156812257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	156812258	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	156812259	.	C	.	.	LowGQX	END=156812268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	156812269	.	T	.	.	LowGQX	END=156812281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	156812282	.	C	.	.	LowGQX	END=156812299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156812300	.	C	.	.	LowGQX	.	GT	./.
chr1	156812301	.	C	.	.	LowGQX	END=156812302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156812794	.	A	.	.	LowGQX	END=156812871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	156812872	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	156812873	.	C	.	.	LowGQX	END=156812945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	156812946	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156812947	.	A	.	.	LowGQX	END=156813027	GT	./.
chr1	156813136	.	C	.	.	LowGQX	END=156813211	GT	./.
chr1	156813212	.	G	.	.	LowGQX	END=156813217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156813218	.	C	.	.	LowGQX	.	GT	./.
chr1	156813219	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156813220	.	A	.	.	LowGQX	END=156813221	GT	./.
chr1	156813222	.	C	.	.	LowGQX	END=156813226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156813227	.	G	.	.	LowGQX	.	GT	./.
chr1	156813228	.	C	.	.	LowGQX	END=156813231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156813232	.	G	.	.	LowGQX	.	GT	./.
chr1	156813233	.	A	.	.	LowGQX	END=156813242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156813243	.	G	.	.	LowGQX	.	GT	./.
chr1	156813244	.	A	.	.	LowGQX	END=156813247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156813248	.	A	.	.	LowGQX	.	GT	./.
chr1	156813249	.	C	.	.	LowGQX	END=156813250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156813251	.	G	.	.	LowGQX	.	GT	./.
chr1	156813252	.	A	.	.	LowGQX	END=156813254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156813255	.	C	.	.	LowGQX	.	GT	./.
chr1	156813256	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	156813257	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156813258	.	A	.	.	LowGQX	END=156813278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156813279	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	156813280	.	G	.	.	LowGQX	END=156813295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	156813965	.	A	.	.	LowGQX	END=156814074	GT	./.
chr1	156814252	.	A	.	.	LowGQX	END=156814418	GT	./.
chr1	156814497	.	A	.	.	LowGQX	END=156814637	GT	./.
chr1	156814866	.	A	.	.	LowGQX	.	GT	./.
chr1	156814867	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814868	.	T	.	.	LowGQX	END=156814869	GT	./.
chr1	156814870	.	T	.	.	LowGQX	END=156814872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814873	.	G	.	.	LowGQX	.	GT	./.
chr1	156814874	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814875	.	C	.	.	LowGQX	END=156814876	GT	./.
chr1	156814877	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814878	.	G	.	.	LowGQX	.	GT	./.
chr1	156814879	.	G	.	.	LowGQX	END=156814882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814883	.	G	.	.	LowGQX	.	GT	./.
chr1	156814884	.	C	.	.	LowGQX	END=156814885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814886	.	C	.	.	LowGQX	END=156814887	GT	./.
chr1	156814888	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814889	.	A	.	.	LowGQX	.	GT	./.
chr1	156814890	.	G	.	.	LowGQX	END=156814891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814892	.	C	.	.	LowGQX	.	GT	./.
chr1	156814893	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814894	.	A	.	.	LowGQX	.	GT	./.
chr1	156814895	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814896	.	G	.	.	LowGQX	.	GT	./.
chr1	156814897	.	G	.	.	LowGQX	END=156814900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814901	.	C	.	.	LowGQX	.	GT	./.
chr1	156814902	.	G	.	.	LowGQX	END=156814908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814909	.	C	.	.	LowGQX	.	GT	./.
chr1	156814910	.	A	.	.	LowGQX	END=156814914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814915	.	A	.	.	LowGQX	.	GT	./.
chr1	156814916	.	C	.	.	LowGQX	END=156814917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814918	.	G	.	.	LowGQX	END=156814919	GT	./.
chr1	156814920	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814921	.	T	.	.	LowGQX	END=156814922	GT	./.
chr1	156814923	.	C	.	.	LowGQX	END=156814925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814926	.	C	.	.	LowGQX	END=156814929	GT	./.
chr1	156814930	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814931	.	G	.	.	LowGQX	.	GT	./.
chr1	156814932	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814933	.	T	.	.	LowGQX	END=156814934	GT	./.
chr1	156814935	.	G	.	.	LowGQX	END=156814939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814940	.	C	.	.	LowGQX	END=156814941	GT	./.
chr1	156814942	.	T	.	.	LowGQX	END=156814943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814944	.	G	.	.	LowGQX	END=156814946	GT	./.
chr1	156814947	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814948	.	T	.	.	LowGQX	.	GT	./.
chr1	156814949	.	C	.	.	LowGQX	END=156814950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814951	.	A	.	.	LowGQX	END=156814952	GT	./.
chr1	156814953	.	C	.	.	LowGQX	END=156814955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814956	.	G	.	.	LowGQX	END=156814957	GT	./.
chr1	156814958	.	A	.	.	LowGQX	END=156814960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814961	.	C	.	.	LowGQX	.	GT	./.
chr1	156814962	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814963	.	G	.	.	LowGQX	.	GT	./.
chr1	156814964	.	T	.	.	LowGQX	END=156814966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156814967	.	A	.	.	LowGQX	END=156815090	GT	./.
chr1	156815135	.	C	.	.	LowGQX	.	GT	./.
chr1	156815136	.	C	.	.	LowGQX	END=156815139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815140	.	A	.	.	LowGQX	.	GT	./.
chr1	156815141	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815142	.	C	.	.	LowGQX	.	GT	./.
chr1	156815143	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815144	.	C	.	.	LowGQX	END=156815145	GT	./.
chr1	156815146	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815147	.	G	.	.	LowGQX	.	GT	./.
chr1	156815148	.	C	.	.	LowGQX	END=156815149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815150	.	C	.	.	LowGQX	END=156815156	GT	./.
chr1	156815157	.	T	.	.	LowGQX	END=156815158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815159	.	C	.	.	LowGQX	END=156815160	GT	./.
chr1	156815161	.	C	.	.	LowGQX	END=156815162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815163	.	C	.	.	LowGQX	END=156815164	GT	./.
chr1	156815165	.	T	.	.	LowGQX	END=156815166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815167	.	T	.	.	LowGQX	.	GT	./.
chr1	156815168	.	G	.	.	LowGQX	END=156815169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815170	.	G	.	.	LowGQX	END=156815171	GT	./.
chr1	156815172	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815173	.	C	.	.	LowGQX	.	GT	./.
chr1	156815174	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815175	.	C	.	.	LowGQX	.	GT	./.
chr1	156815176	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815177	.	T	.	.	LowGQX	END=156815178	GT	./.
chr1	156815179	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815180	.	T	.	.	LowGQX	END=156815181	GT	./.
chr1	156815182	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815183	.	T	.	.	LowGQX	END=156815184	GT	./.
chr1	156815185	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815186	.	A	.	.	LowGQX	.	GT	./.
chr1	156815187	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815188	.	G	.	.	LowGQX	.	GT	./.
chr1	156815189	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815190	.	C	.	.	LowGQX	END=156815192	GT	./.
chr1	156815193	.	C	.	.	LowGQX	END=156815198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815199	.	A	.	.	LowGQX	.	GT	./.
chr1	156815200	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815201	.	G	.	.	LowGQX	END=156815202	GT	./.
chr1	156815203	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815204	.	A	.	.	LowGQX	.	GT	./.
chr1	156815205	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815206	.	C	.	.	LowGQX	.	GT	./.
chr1	156815207	.	T	.	.	LowGQX	END=156815213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815214	.	G	.	.	LowGQX	.	GT	./.
chr1	156815215	.	C	.	.	LowGQX	END=156815221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815222	.	T	.	.	LowGQX	END=156815234	GT	./.
chr1	156815399	.	C	.	.	LowGQX	END=156815443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815444	.	T	.	.	LowGQX	.	GT	./.
chr1	156815445	.	C	.	.	LowGQX	END=156815448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156815449	.	C	.	.	LowGQX	.	GT	./.
chr1	156815450	.	T	.	.	LowGQX	END=156815457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156815458	.	G	.	.	LowGQX	END=156815460	GT	./.
chr1	156815461	.	C	.	.	LowGQX	END=156815474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156815475	.	C	.	.	LowGQX	.	GT	./.
chr1	156815476	.	C	.	.	LowGQX	END=156815512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156815513	.	T	.	.	LowGQX	.	GT	./.
chr1	156815514	.	G	.	.	LowGQX	END=156815542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815543	.	G	.	.	LowGQX	.	GT	./.
chr1	156815544	.	C	.	.	LowGQX	END=156815551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156815552	.	T	.	.	LowGQX	END=156815618	GT	./.
chr1	156815731	.	C	.	.	LowGQX	END=156815913	GT	./.
chr1	156816309	.	A	.	.	LowGQX	END=156816551	GT	./.
chr1	156818711	.	A	.	.	LowGQX	END=156818722	GT	./.
chr1	156818723	.	A	.	.	LowGQX	END=156818725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818726	.	A	.	.	LowGQX	.	GT	./.
chr1	156818727	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818728	.	A	.	.	LowGQX	END=156818729	GT	./.
chr1	156818730	.	G	.	.	LowGQX	END=156818731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818732	.	T	.	.	LowGQX	.	GT	./.
chr1	156818733	.	G	.	.	LowGQX	END=156818734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818735	.	A	.	.	LowGQX	.	GT	./.
chr1	156818736	.	G	.	.	LowGQX	END=156818737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818738	.	T	.	.	LowGQX	.	GT	./.
chr1	156818739	.	G	.	.	LowGQX	END=156818742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818743	.	A	.	.	LowGQX	.	GT	./.
chr1	156818744	.	G	.	.	LowGQX	END=156818748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818749	.	C	.	.	LowGQX	END=156818750	GT	./.
chr1	156818751	.	G	.	.	LowGQX	END=156818753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818754	.	C	.	.	LowGQX	.	GT	./.
chr1	156818755	.	T	.	.	LowGQX	END=156818756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818757	.	C	.	.	LowGQX	END=156818759	GT	./.
chr1	156818760	.	T	.	.	LowGQX	END=156818762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818763	.	C	.	.	LowGQX	END=156818764	GT	./.
chr1	156818765	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818766	.	A	.	.	LowGQX	END=156818767	GT	./.
chr1	156818768	.	A	.	.	LowGQX	END=156818769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818770	.	C	.	.	LowGQX	.	GT	./.
chr1	156818771	.	G	.	.	LowGQX	END=156818772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818773	.	T	.	.	LowGQX	.	GT	./.
chr1	156818774	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818775	.	C	.	.	LowGQX	.	GT	./.
chr1	156818776	.	C	.	.	LowGQX	END=156818781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818782	.	A	.	.	LowGQX	.	GT	./.
chr1	156818783	.	G	.	.	LowGQX	END=156818785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818786	.	G	.	.	LowGQX	.	GT	./.
chr1	156818787	.	G	.	.	LowGQX	END=156818788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818789	.	T	.	.	LowGQX	END=156818791	GT	./.
chr1	156818792	.	G	.	.	LowGQX	END=156818797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818798	.	C	.	.	LowGQX	END=156818799	GT	./.
chr1	156818800	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818801	.	C	.	.	LowGQX	END=156818802	GT	./.
chr1	156818803	.	G	.	.	LowGQX	END=156818805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818806	.	A	.	.	LowGQX	END=156818807	GT	./.
chr1	156818808	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818809	.	T	.	.	LowGQX	.	GT	./.
chr1	156818810	.	T	.	.	LowGQX	END=156818813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818814	.	C	.	.	LowGQX	.	GT	./.
chr1	156818815	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818816	.	C	.	.	LowGQX	.	GT	./.
chr1	156818817	.	G	.	.	LowGQX	END=156818818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818819	.	A	.	.	LowGQX	.	GT	./.
chr1	156818820	.	G	.	.	LowGQX	END=156818823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818824	.	A	.	.	LowGQX	.	GT	./.
chr1	156818825	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818826	.	G	.	.	LowGQX	END=156818830	GT	./.
chr1	156818831	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818832	.	A	.	.	LowGQX	.	GT	./.
chr1	156818833	.	G	.	.	LowGQX	END=156818840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156818841	.	T	.	.	LowGQX	.	GT	./.
chr1	156819036	.	A	.	.	LowGQX	END=156819254	GT	./.
chr1	156820974	.	C	.	.	LowGQX	END=156821069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156821070	.	C	.	.	LowGQX	END=156821582	GT	./.
chr1	156821678	.	A	.	.	LowGQX	END=156821985	GT	./.
chr1	156823542	.	A	.	.	LowGQX	END=156823543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156823544	.	C	.	.	LowGQX	.	GT	./.
chr1	156823545	.	T	.	.	LowGQX	END=156823559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156823560	.	G	.	.	LowGQX	.	GT	./.
chr1	156823561	.	G	.	.	LowGQX	END=156823563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156823564	.	G	.	.	LowGQX	.	GT	./.
chr1	156823565	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156823566	.	C	.	.	LowGQX	.	GT	./.
chr1	156823567	.	C	.	.	LowGQX	END=156823568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156823569	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156823570	.	C	.	.	LowGQX	END=156823573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156823574	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156823575	.	G	.	.	LowGQX	.	GT	./.
chr1	156823576	.	T	.	.	LowGQX	END=156823579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156823580	.	C	.	.	LowGQX	.	GT	./.
chr1	156823581	.	A	.	.	LowGQX	END=156823583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156823584	.	G	.	.	LowGQX	.	GT	./.
chr1	156823585	.	T	.	.	LowGQX	END=156823586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156823587	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156823588	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156823589	.	C	.	.	LowGQX	END=156823590	GT	./.
chr1	156823591	.	C	.	.	LowGQX	END=156823598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156823599	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156823600	.	G	.	.	LowGQX	END=156823601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156823602	.	C	.	.	LowGQX	.	GT	./.
chr1	156823603	.	T	.	.	LowGQX	END=156823604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156823605	.	G	.	.	LowGQX	.	GT	./.
chr1	156823606	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156823607	.	C	.	.	LowGQX	END=156823608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156823609	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156823610	.	A	.	.	LowGQX	END=156823611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156823612	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156823613	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156823614	.	C	.	.	LowGQX	END=156823615	GT	./.
chr1	156823616	.	C	.	.	LowGQX	END=156823617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156823618	.	C	.	.	LowGQX	.	GT	./.
chr1	156823619	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156823620	.	A	.	.	LowGQX	.	GT	./.
chr1	156823621	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156823622	.	C	.	.	LowGQX	.	GT	./.
chr1	156823623	.	A	.	.	LowGQX	END=156823627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156823628	.	C	.	.	LowGQX	END=156823629	GT	./.
chr1	156823630	.	A	.	.	LowGQX	END=156823633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156823634	.	C	.	.	LowGQX	.	GT	./.
chr1	156823635	.	A	.	.	LowGQX	END=156823636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156823637	.	C	.	.	LowGQX	.	GT	./.
chr1	156823638	.	A	.	.	LowGQX	END=156823639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156823640	.	G	.	.	LowGQX	.	GT	./.
chr1	156823641	.	G	.	.	LowGQX	END=156823643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156823644	.	C	.	.	LowGQX	.	GT	./.
chr1	156823645	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156823646	.	C	.	.	LowGQX	END=156823647	GT	./.
chr1	156823648	.	T	.	.	LowGQX	END=156823651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156823652	.	C	.	.	LowGQX	.	GT	./.
chr1	156823653	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156823654	.	C	.	.	LowGQX	.	GT	./.
chr1	156823655	.	A	.	.	LowGQX	END=156823656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156823657	.	T	.	.	LowGQX	END=156823863	GT	./.
chr1	156823864	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156823865	.	C	.	.	LowGQX	END=156823883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156823884	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156823885	.	G	.	.	LowGQX	END=156823911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156823912	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	156823913	.	C	.	.	LowGQX	END=156823923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156823924	.	A	.	.	LowGQX	.	GT	./.
chr1	156823925	.	A	.	.	LowGQX	END=156824028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156824029	.	A	.	.	LowGQX	.	GT	./.
chr1	156824030	.	C	.	.	LowGQX	END=156824097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156828322	.	G	.	.	LowGQX	END=156828397	GT	./.
chr1	156828398	.	G	.	.	LowGQX	END=156828421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156830676	.	C	.	.	PASS	END=156830685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	156830686	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:72:60
chr1	156830687	.	C	.	.	PASS	END=156830696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	156830697	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:75:60
chr1	156830698	.	C	.	.	PASS	END=156830726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	156830727	.	A	.	31.37	LowGQX	DP=45;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:36:45:1.38:60:1
chr1	156830728	.	T	.	.	PASS	END=156830734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr1	156830735	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:59:60
chr1	156830736	.	G	.	.	PASS	END=156830740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	156830741	.	A	.	82.55	PASS	DP=54;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:41:54:52.56:60:53
chr1	156830742	.	C	.	.	PASS	END=156830760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:90:60
chr1	156830761	.	G	.	.	PASS	END=156830792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	156830793	.	C	.	.	PASS	END=156830844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	156830845	.	G	.	.	PASS	END=156830931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	156830932	.	C	.	.	PASS	END=156830950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	156830951	.	C	.	.	PASS	END=156830977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	156830978	.	C	.	.	PASS	END=156830989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	156834095	.	G	.	.	PASS	END=156834110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr1	156834111	.	C	.	.	PASS	END=156834208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	156834209	.	G	.	.	PASS	END=156834256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	156834257	.	A	.	.	PASS	END=156834270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	156834271	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:69:60
chr1	156834469	.	G	.	.	PASS	END=156834486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	156834487	.	C	.	.	PASS	END=156834513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	156834514	.	C	.	.	PASS	END=156834601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	156834602	.	C	.	.	PASS	END=156834629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	156834630	.	G	.	.	PASS	END=156834642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	156836651	.	T	.	.	PASS	END=156836672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	156836673	.	T	.	.	PASS	END=156836683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	156836684	.	G	.	.	PASS	END=156836799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	156836800	.	C	.	.	PASS	END=156836821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	156837845	.	G	.	.	PASS	END=156837849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	156837850	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:69:60
chr1	156837851	.	T	.	.	PASS	END=156837854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	156837855	.	G	.	.	PASS	END=156837856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:61:60
chr1	156837857	.	C	.	.	PASS	END=156837883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:93:60
chr1	156837884	.	C	.	.	PASS	END=156837921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	156837922	.	G	.	.	PASS	END=156838005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	156838006	.	A	.	.	PASS	END=156838034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	156838035	.	A	.	.	PASS	END=156838063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:81:60
chr1	156838064	.	G	.	.	PASS	END=156838076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	156838077	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:72:60
chr1	156838078	.	G	.	.	PASS	END=156838086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	156838087	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:63:60
chr1	156838088	.	C	.	.	PASS	END=156838092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	156838246	.	G	.	.	PASS	END=156838271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	156838272	.	G	.	.	PASS	END=156838381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	156838382	.	G	.	.	PASS	END=156838406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	156838407	.	C	.	.	PASS	END=156838421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	156838422	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:60:60
chr1	156838423	.	A	.	.	PASS	END=156838434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	156838435	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:75:60
chr1	156838436	.	G	.	.	PASS	END=156838437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	156838438	.	T	.	.	PASS	END=156838447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	156838448	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:28:60
chr1	156838449	.	C	.	.	PASS	END=156838461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	156838462	.	C	.	.	PASS	END=156838472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	156838473	.	T	.	.	PASS	END=156838477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	156838478	.	G	.	.	PASS	END=156838489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	156838490	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:45:60
chr1	156841364	.	C	.	.	PASS	END=156841381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	156841382	.	C	.	.	PASS	END=156841433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	156841434	.	C	.	.	PASS	END=156841554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	156841555	.	T	.	.	PASS	END=156841587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	156841588	.	T	.	.	PASS	END=156841598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	156843374	.	C	.	.	PASS	END=156843376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	156843377	.	C	.	.	PASS	END=156843382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:96:60
chr1	156843383	.	G	.	.	PASS	END=156843421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	156843422	.	C	.	.	PASS	END=156843425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	156843426	.	C	.	.	PASS	END=156843438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	156843439	.	C	.	.	PASS	END=156843453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	156843454	.	G	.	.	PASS	END=156843471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	156843472	.	T	.	.	PASS	END=156843500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	156843501	.	G	.	.	PASS	END=156843551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:284:99:60
chr1	156843552	.	C	.	.	PASS	END=156843716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:319:99:60
chr1	156843717	.	C	.	.	PASS	END=156843754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:60
chr1	156843755	.	C	.	.	PASS	END=156843771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	156843772	.	C	.	.	PASS	END=156843790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	156843791	.	T	.	.	PASS	END=156843802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	156844094	.	A	.	.	PASS	END=156844128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	156844129	.	T	.	.	PASS	END=156844213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	156844214	.	G	.	.	PASS	END=156844234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:96:60
chr1	156844235	.	G	.	.	PASS	END=156844243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	156844312	.	G	.	.	PASS	END=156844345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	156844346	.	G	.	.	PASS	END=156844362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	156844363	.	A	.	.	PASS	END=156844385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	156844386	.	C	.	.	PASS	END=156844464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	156844465	.	T	.	.	PASS	END=156844469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	156844647	.	C	.	.	PASS	END=156844658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	156844659	.	G	.	.	PASS	END=156844679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	156844680	.	A	.	.	PASS	END=156844725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	156844726	.	T	.	.	PASS	END=156844780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	156844781	.	A	.	.	PASS	END=156844812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	156844813	.	T	.	.	PASS	END=156844845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	156844846	.	C	.	.	PASS	END=156844851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	156845261	.	C	.	.	PASS	END=156845276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	156845277	.	G	.	.	PASS	END=156845280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	156845281	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:69:60
chr1	156845282	.	C	.	.	PASS	END=156845294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	156845295	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:60:60
chr1	156845296	.	T	.	.	PASS	END=156845319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	156845320	.	G	.	.	PASS	END=156845331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	156845332	.	G	.	.	PASS	END=156845349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	156845350	.	T	.	.	PASS	END=156845384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	156845385	.	G	.	.	PASS	END=156845435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	156845436	.	C	.	.	PASS	END=156845470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	156845471	.	G	.	.	PASS	END=156845482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	156845483	.	G	.	.	PASS	END=156845489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	156845490	.	C	.	.	PASS	END=156845497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	156845498	.	T	.	.	PASS	END=156845505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	156845506	.	T	.	.	PASS	END=156845509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	156845817	.	C	.	.	PASS	END=156845823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	156845824	.	A	.	.	PASS	END=156845826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	156845827	.	C	.	.	PASS	END=156845829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	156845830	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:60
chr1	156845831	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:96:60
chr1	156845832	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:60
chr1	156845833	.	A	.	.	PASS	END=156845835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	156845836	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:45:60
chr1	156845837	.	C	.	.	PASS	END=156845845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	156845846	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:72:60
chr1	156845847	.	C	.	.	PASS	END=156845852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	156845853	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:50:0:60
chr1	156845854	.	C	.	.	PASS	END=156845888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr1	156845889	.	C	.	.	PASS	END=156845923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	156845924	.	G	.	.	PASS	END=156845994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	156845995	.	C	.	.	PASS	END=156846029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	156846030	.	T	.	.	PASS	END=156846047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	156846048	.	C	.	.	PASS	END=156846053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	156846141	.	C	.	.	PASS	END=156846148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	156846149	.	G	.	.	PASS	END=156846154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	156846155	.	C	.	.	PASS	END=156846162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	156846163	.	T	.	.	PASS	END=156846191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	156846192	.	G	.	.	PASS	END=156846205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	156846206	.	G	.	.	PASS	END=156846252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	156846253	.	C	.	.	PASS	END=156846288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	156846289	.	G	.	.	PASS	END=156846337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	156846338	.	G	.	.	PASS	END=156846385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:96:60
chr1	156846386	.	G	.	.	PASS	END=156846399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	156846400	.	C	.	.	PASS	END=156846412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	156846413	.	C	.	.	PASS	END=156846415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	156848863	.	C	.	.	PASS	END=156848869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	156848870	.	G	.	.	PASS	END=156848877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	156848878	.	C	.	.	PASS	END=156848884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	156848885	.	C	.	.	PASS	END=156848906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	156848907	.	T	.	.	PASS	END=156848913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	156848914	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:66:60
chr1	156848915	.	T	.	.	PASS	END=156848932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	156848933	.	A	.	.	PASS	END=156848944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	156848945	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:69:60
chr1	156848946	.	G	.	.	PASS	END=156848972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	156848973	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:72:60
chr1	156848974	.	G	.	.	PASS	END=156848991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	156848992	.	G	.	.	PASS	END=156848994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	156848995	.	C	T	951.88	PASS	BaseQRankSum=2.028;DP=73;Dels=0.00;FS=5.564;HRun=0;HaplotypeScore=6.6812;MQ=60;MQ0=0;MQRankSum=-0.714;QD=13.04;ReadPosRankSum=2.542;SB=-506.82	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:27,46:73:99:982,0,621:60:99:0.630
chr1	156848996	.	G	.	.	PASS	END=156849011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	156849012	.	C	.	.	PASS	END=156849129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	156849130	.	T	.	.	PASS	END=156849141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	156849142	.	C	.	.	PASS	END=156849153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	156849154	.	T	.	.	PASS	END=156849161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	156849162	.	T	.	.	PASS	END=156849168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	156849169	.	T	.	.	PASS	END=156849172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	156849173	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:39:60
chr1	156849174	.	A	.	.	PASS	END=156849180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	156849181	.	T	.	.	PASS	END=156849203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	156849204	.	A	.	.	PASS	END=156849205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	156849740	.	A	.	.	PASS	END=156849746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	156849747	.	G	.	.	PASS	END=156849757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	156849758	.	C	.	.	PASS	END=156849770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	156849771	.	G	.	.	PASS	END=156849779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	156849780	.	G	.	.	PASS	END=156849795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	156849796	.	A	.	.	PASS	END=156849828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	156849829	.	G	.	.	PASS	END=156849911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	156849912	.	A	.	.	PASS	END=156849945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:88:60
chr1	156849946	.	G	.	.	PASS	END=156849950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	156849951	.	T	.	.	PASS	END=156849962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:75:60
chr1	156849963	.	C	.	.	PASS	END=156849967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	156849968	.	T	.	.	PASS	END=156849973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:60
chr1	156849974	.	C	.	.	PASS	END=156849979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	156849980	.	G	.	.	PASS	END=156849989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	156849990	.	T	.	.	PASS	END=156850000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	156851198	.	T	.	.	PASS	END=156851230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	156851231	.	T	.	.	PASS	END=156851263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	156851264	.	A	.	.	PASS	END=156851397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	156851398	.	C	.	.	PASS	END=156851419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	156851420	.	G	.	.	PASS	END=156851450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	156851451	.	C	.	.	PASS	END=156851476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	156851477	.	G	.	.	PASS	END=156851485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	156873717	.	C	.	.	PASS	END=156873821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	156874538	.	A	.	.	PASS	END=156874598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	156874599	.	C	.	.	PASS	END=156874618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	156874619	.	G	.	.	PASS	END=156874646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	156874699	.	C	.	.	PASS	END=156874713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	156874714	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:66:60
chr1	156874715	.	C	.	.	PASS	END=156874723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	156874724	.	T	.	.	PASS	END=156874738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	156874739	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:32:60
chr1	156874740	.	T	.	.	PASS	END=156874761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	156874762	.	A	.	.	PASS	END=156874775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	156874776	.	C	.	.	PASS	END=156874777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	156874778	.	T	.	.	PASS	END=156874780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	156874781	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:33:60
chr1	156874782	.	C	.	.	PASS	END=156874784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	156874785	.	T	.	.	PASS	END=156874795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	156874796	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:39:60
chr1	156874797	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:54:60
chr1	156874798	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:60
chr1	156875063	.	T	.	.	PASS	END=156875091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	156875092	.	G	A	1067.26	PASS	BaseQRankSum=1.893;DP=107;Dels=0.00;FS=2.645;HRun=1;HaplotypeScore=10.5075;MQ=60;MQ0=0;MQRankSum=-1.151;QD=9.97;ReadPosRankSum=0.527;SB=-593.90	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:56,51:107:99:1097,0,1306:60:99:0.477
chr1	156875093	.	G	.	.	PASS	END=156875096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	156875097	.	G	A	968.82	PASS	BaseQRankSum=0.618;DP=108;Dels=0.00;FS=3.991;HRun=0;HaplotypeScore=8.5745;MQ=60;MQ0=0;MQRankSum=-1.153;QD=8.97;ReadPosRankSum=0.606;SB=-580.29	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:56,52:108:99:999,0,1230:60:99:0.481
chr1	156875098	.	C	.	.	PASS	END=156875106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	156875107	.	C	A	1278.26	PASS	BaseQRankSum=2.091;DP=127;Dels=0.00;FS=2.303;HRun=0;HaplotypeScore=9.4692;MQ=60;MQ0=0;MQRankSum=1.198;QD=10.07;ReadPosRankSum=0.100;SB=-834.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:62,64:127:99:1308,0,1562:60:99:0.508
chr1	156875108	.	C	.	.	PASS	END=156875199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	156875200	.	C	.	.	PASS	END=156875235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	156875236	.	A	.	.	PASS	END=156875252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:93:60
chr1	156875253	.	A	.	.	PASS	END=156875272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	156875273	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:99:60
chr1	156876065	.	C	.	.	PASS	END=156876081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	156876082	.	G	.	.	PASS	END=156876110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	156876111	.	C	.	.	PASS	END=156876164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	156876427	.	A	.	.	PASS	END=156876456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	156876457	.	G	.	.	PASS	END=156876624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	156876625	.	T	.	.	PASS	END=156876674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	156877400	.	A	.	.	PASS	END=156877417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	156877418	.	T	.	.	PASS	END=156877456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	156877457	.	T	C	3497.19	PASS	BaseQRankSum=1.107;DP=133;Dels=0.00;FS=3.261;HRun=1;HaplotypeScore=17.2219;MQ=60;MQ0=0;MQRankSum=1.654;QD=26.29;ReadPosRankSum=-1.081;SB=-2193.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,132:133:99:3497,259,0:60:99:0.992
chr1	156877458	.	C	.	.	PASS	END=156877524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	156877705	.	A	.	.	PASS	END=156877757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	156877758	.	T	.	.	PASS	END=156877823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	156877824	.	C	.	.	PASS	END=156877845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	156877918	.	A	.	.	PASS	END=156877950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	156877951	.	G	.	.	PASS	END=156878096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	156878097	.	G	.	.	PASS	END=156878108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	156878109	.	C	.	.	PASS	END=156878134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	156878445	.	A	.	.	PASS	END=156878470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	156878471	.	C	.	.	PASS	END=156878609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	156878610	.	C	.	.	PASS	END=156878623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	156878706	.	A	.	.	PASS	END=156878830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	156879541	.	A	.	.	PASS	END=156879561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	156879562	.	C	.	.	PASS	END=156879708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:271:99:60
chr1	156879796	.	A	.	.	PASS	END=156879874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	156879875	.	C	.	.	PASS	END=156879902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	156880024	.	A	.	.	PASS	END=156880077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	156880078	.	C	.	.	PASS	END=156880153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	156880154	.	G	.	.	PASS	END=156880174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	156880408	.	A	.	.	PASS	END=156880516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	156880517	.	G	.	.	PASS	END=156880537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	156882037	.	A	.	.	PASS	END=156882093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	156882094	.	T	.	.	PASS	END=156882169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	156882284	.	A	.	.	PASS	END=156882383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	156882384	.	C	.	.	PASS	END=156882416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	156882560	.	A	.	.	PASS	END=156882594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	156882595	.	C	.	.	PASS	END=156882731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	156882732	.	T	.	.	PASS	END=156882753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	156882754	.	G	.	.	PASS	END=156882775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	156882776	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:76:99:60
chr1	156882981	.	T	.	.	PASS	END=156883080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	156883181	.	A	.	.	PASS	END=156883213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	156883214	.	A	.	.	PASS	END=156883317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	156883469	.	C	.	.	PASS	END=156883492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	156883493	.	G	A	1793.24	PASS	BaseQRankSum=-1.449;DP=171;Dels=0.00;FS=2.898;HRun=0;HaplotypeScore=20.0425;MQ=60;MQ0=0;MQRankSum=-0.651;QD=10.49;ReadPosRankSum=-0.445;SB=-803.53	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:93,77:171:99:1823,0,2601:60:99:0.453
chr1	156883494	.	C	.	.	PASS	END=156883545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	156883546	.	A	G	2166.84	PASS	BaseQRankSum=-0.939;DP=170;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=15.1932;MQ=60;MQ0=0;MQRankSum=1.111;QD=12.75;ReadPosRankSum=-0.577;SB=-1120.35	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:89,81:170:99:2197,0,2509:60:99:0.476
chr1	156883547	.	A	.	.	PASS	END=156883568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	156883642	.	A	.	.	PASS	END=156883799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	156883800	.	A	.	.	PASS	END=156883845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	156883846	.	A	.	.	PASS	END=156883881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	156883882	.	C	.	.	PASS	END=156883894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	156884437	.	A	.	.	PASS	END=156884485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:96:60
chr1	156884486	.	C	.	.	PASS	END=156884562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	156884563	.	A	.	.	PASS	END=156884592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	156890595	.	C	.	.	LowGQX	END=156890755	GT	./.
chr1	156893740	.	G	.	.	LowGQX	END=156893745	GT	./.
chr1	156893746	.	T	.	.	LowGQX	END=156893749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156893750	.	A	.	.	LowGQX	.	GT	./.
chr1	156893751	.	G	.	.	LowGQX	END=156893767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156893768	.	A	.	.	LowGQX	.	GT	./.
chr1	156893769	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156893770	.	A	.	.	LowGQX	.	GT	./.
chr1	156893771	.	C	.	.	LowGQX	END=156893773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156893774	.	A	.	.	LowGQX	.	GT	./.
chr1	156893775	.	C	.	.	LowGQX	END=156893790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156893791	.	A	.	.	LowGQX	.	GT	./.
chr1	156893792	.	C	.	.	LowGQX	END=156893801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156893802	.	C	.	.	LowGQX	.	GT	./.
chr1	156893803	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156893804	.	A	.	.	LowGQX	END=156893806	GT	./.
chr1	156893807	.	C	.	.	LowGQX	END=156893809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156893810	.	A	.	.	LowGQX	.	GT	./.
chr1	156893811	.	C	.	.	LowGQX	END=156893812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156893813	.	T	.	.	LowGQX	END=156893814	GT	./.
chr1	156893815	.	C	.	.	LowGQX	END=156893816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156893817	.	C	.	.	LowGQX	END=156893819	GT	./.
chr1	156893820	.	A	.	.	LowGQX	END=156893826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156893827	.	A	.	.	LowGQX	END=156893829	GT	./.
chr1	156893830	.	C	.	.	LowGQX	END=156893832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156893833	.	C	.	.	LowGQX	END=156893845	GT	./.
chr1	156893846	.	C	.	.	LowGQX	END=156893850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156893851	.	T	.	.	LowGQX	END=156893852	GT	./.
chr1	156893853	.	C	.	.	LowGQX	END=156893854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156893855	.	T	.	.	LowGQX	.	GT	./.
chr1	156893856	.	C	.	.	LowGQX	END=156893878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156893879	.	A	.	.	LowGQX	.	GT	./.
chr1	156893880	.	G	.	.	LowGQX	END=156893891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156893892	.	T	.	.	LowGQX	.	GT	./.
chr1	156893893	.	G	.	.	LowGQX	END=156893901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156893902	.	T	.	.	LowGQX	.	GT	./.
chr1	156893903	.	G	.	.	LowGQX	END=156893907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156893908	.	T	.	.	LowGQX	.	GT	./.
chr1	156893909	.	C	.	.	LowGQX	END=156893914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156893915	.	T	.	.	LowGQX	.	GT	./.
chr1	156893916	.	G	.	.	LowGQX	END=156893918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894215	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894216	.	A	.	.	LowGQX	.	GT	./.
chr1	156894217	.	C	.	.	LowGQX	END=156894218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894219	.	A	.	.	LowGQX	.	GT	./.
chr1	156894220	.	T	.	.	LowGQX	END=156894238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894239	.	T	.	.	LowGQX	.	GT	./.
chr1	156894240	.	G	.	.	LowGQX	END=156894241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894242	.	A	.	.	LowGQX	.	GT	./.
chr1	156894243	.	G	.	.	LowGQX	END=156894245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894246	.	T	.	.	LowGQX	.	GT	./.
chr1	156894247	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894248	.	A	.	.	LowGQX	END=156894249	GT	./.
chr1	156894250	.	T	.	.	LowGQX	END=156894254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894255	.	T	.	.	LowGQX	.	GT	./.
chr1	156894256	.	G	.	.	LowGQX	END=156894257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894258	.	A	.	.	LowGQX	.	GT	./.
chr1	156894259	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894260	.	A	.	.	LowGQX	.	GT	./.
chr1	156894261	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894262	.	C	.	.	LowGQX	END=156894265	GT	./.
chr1	156894266	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894267	.	A	.	.	LowGQX	.	GT	./.
chr1	156894268	.	C	.	.	LowGQX	END=156894269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894270	.	T	.	.	LowGQX	.	GT	./.
chr1	156894271	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894272	.	T	.	.	LowGQX	END=156894273	GT	./.
chr1	156894274	.	C	.	.	LowGQX	END=156894283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894284	.	A	.	.	LowGQX	.	GT	./.
chr1	156894285	.	C	.	.	LowGQX	END=156894286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894287	.	A	.	.	LowGQX	END=156894288	GT	./.
chr1	156894289	.	C	.	.	LowGQX	END=156894296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894297	.	A	.	.	LowGQX	END=156894300	GT	./.
chr1	156894301	.	G	.	.	LowGQX	END=156894309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894310	.	G	.	.	LowGQX	.	GT	./.
chr1	156894311	.	G	.	.	LowGQX	END=156894314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894315	.	G	.	.	LowGQX	.	GT	./.
chr1	156894316	.	C	.	.	LowGQX	END=156894318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894319	.	G	.	.	LowGQX	.	GT	./.
chr1	156894320	.	T	.	.	LowGQX	END=156894326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894327	.	A	.	.	LowGQX	END=156894328	GT	./.
chr1	156894329	.	G	.	.	LowGQX	END=156894334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894335	.	T	.	.	LowGQX	.	GT	./.
chr1	156894336	.	A	.	.	LowGQX	END=156894344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894423	.	C	.	.	LowGQX	END=156894443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894444	.	T	.	.	LowGQX	END=156894445	GT	./.
chr1	156894446	.	G	.	.	LowGQX	END=156894449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156894450	.	A	.	.	LowGQX	END=156894522	GT	./.
chr1	156894719	.	G	.	.	LowGQX	END=156894818	GT	./.
chr1	156896978	.	T	.	.	LowGQX	END=156897077	GT	./.
chr1	156897287	.	G	.	.	LowGQX	END=156897447	GT	./.
chr1	156897517	.	C	.	.	LowGQX	END=156897616	GT	./.
chr1	156897702	.	T	.	.	LowGQX	END=156897801	GT	./.
chr1	156899071	.	G	.	.	LowGQX	END=156899221	GT	./.
chr1	156899425	.	C	.	.	LowGQX	END=156899433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156899434	.	G	.	.	LowGQX	.	GT	./.
chr1	156899435	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156899436	.	C	.	.	LowGQX	.	GT	./.
chr1	156899437	.	A	.	.	LowGQX	END=156899460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	156899461	.	G	.	.	LowGQX	.	GT	./.
chr1	156899462	.	G	.	.	LowGQX	END=156899507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156899508	.	G	.	.	LowGQX	.	GT	./.
chr1	156899509	.	G	.	.	LowGQX	END=156899519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156899520	.	G	.	.	LowGQX	.	GT	./.
chr1	156899521	.	A	.	.	LowGQX	END=156899524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156900315	.	C	.	.	LowGQX	END=156900414	GT	./.
chr1	156901705	.	C	.	.	LowGQX	END=156901782	GT	./.
chr1	156901783	.	C	.	.	LowGQX	END=156901819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156902215	.	G	.	.	LowGQX	END=156902219	GT	./.
chr1	156902220	.	C	.	.	LowGQX	END=156902246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156902247	.	C	.	.	LowGQX	.	GT	./.
chr1	156902248	.	T	.	.	LowGQX	END=156902256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156902257	.	A	.	.	LowGQX	.	GT	./.
chr1	156902258	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156902259	.	G	.	.	LowGQX	.	GT	./.
chr1	156902260	.	G	.	.	LowGQX	END=156902262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156902263	.	C	.	.	LowGQX	.	GT	./.
chr1	156902264	.	A	.	.	LowGQX	END=156902274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156902275	.	C	.	.	LowGQX	.	GT	./.
chr1	156902276	.	A	.	.	LowGQX	END=156902287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156902288	.	C	.	.	LowGQX	.	GT	./.
chr1	156902289	.	C	.	.	LowGQX	END=156902300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156902301	.	C	.	.	LowGQX	.	GT	./.
chr1	156902302	.	A	.	.	LowGQX	END=156902322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156902323	.	T	.	.	LowGQX	.	GT	./.
chr1	156902324	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156902325	.	G	.	.	LowGQX	.	GT	./.
chr1	156902326	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156902327	.	T	.	.	LowGQX	.	GT	./.
chr1	156902328	.	G	.	.	LowGQX	END=156902344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156902345	.	C	.	.	LowGQX	.	GT	./.
chr1	156902346	.	C	.	.	LowGQX	END=156902367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156902368	.	C	.	.	LowGQX	.	GT	./.
chr1	156902369	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156902370	.	G	.	.	LowGQX	.	GT	./.
chr1	156902371	.	A	.	.	LowGQX	END=156902373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156902374	.	T	.	.	LowGQX	.	GT	./.
chr1	156902375	.	T	.	.	LowGQX	END=156902393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156902394	.	A	.	.	LowGQX	.	GT	./.
chr1	156902395	.	C	.	.	LowGQX	END=156902417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156902418	.	T	.	.	LowGQX	.	GT	./.
chr1	156902419	.	C	.	.	LowGQX	END=156902441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156902644	.	G	.	.	LowGQX	END=156902699	GT	./.
chr1	156902700	.	T	.	.	LowGQX	END=156902761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	156905772	.	G	.	.	PASS	END=156905865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	156905866	.	G	.	.	PASS	END=156905871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	156905923	.	T	.	.	PASS	END=156905997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	156905998	.	A	.	.	PASS	END=156906034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	156906035	.	A	.	.	PASS	END=156906036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	156906606	.	A	.	.	PASS	END=156906611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	156906612	.	C	.	.	PASS	END=156906630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	156906631	.	T	.	.	PASS	END=156906718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	156906719	.	A	.	.	PASS	END=156906777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	156906778	.	C	.	.	PASS	END=156906799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	156907028	.	C	.	.	PASS	END=156907080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	156907081	.	T	C	1465.72	PASS	BaseQRankSum=-0.822;DP=130;Dels=0.00;FS=0.690;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=-1.171;QD=11.27;ReadPosRankSum=-0.384;SB=-796.68	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:66,64:130:99:1496,0,1619:60:99:0.492
chr1	156907082	.	G	.	.	PASS	END=156907114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	156907115	.	T	C	1175.57	PASS	BaseQRankSum=0.845;DP=114;Dels=0.00;FS=10.365;HRun=1;HaplotypeScore=16.1401;MQ=60;MQ0=0;MQRankSum=-1.298;QD=10.31;ReadPosRankSum=1.769;SB=-379.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:65,48:114:99:1206,0,1416:60:99:0.425
chr1	156907116	.	T	.	.	PASS	END=156907145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	156907146	.	A	.	.	PASS	END=156907210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	156907211	.	G	.	.	PASS	END=156907228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:87:60
chr1	156907229	.	C	.	.	PASS	END=156907240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr1	156907241	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:60:60
chr1	156907242	.	G	.	.	PASS	END=156907244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	156907245	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:72:60
chr1	156907246	.	G	.	.	PASS	END=156907248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	156907249	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr1	156907250	.	C	.	.	PASS	END=156907256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	156907257	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:39:60
chr1	156907258	.	C	.	.	PASS	END=156907284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	156907285	.	T	.	.	PASS	END=156907294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	156907295	.	C	.	.	PASS	END=156907296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:39:60
chr1	156907297	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:81:60
chr1	156908208	.	A	.	.	PASS	END=156908275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	156908276	.	C	.	.	PASS	END=156908307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:93:60
chr1	156909328	.	C	.	.	PASS	END=156909490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:267:99:60
chr1	156909491	.	T	.	.	PASS	END=156909559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	156909560	.	G	.	.	PASS	END=156909689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	156909690	.	C	.	.	PASS	END=156909707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	156909997	.	A	.	.	PASS	END=156910027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	156910028	.	T	.	.	PASS	END=156910189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	156910190	.	C	.	.	PASS	END=156910215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	156910216	.	G	.	.	PASS	END=156910219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	156911145	.	G	.	.	PASS	END=156911173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	156911174	.	C	.	.	PASS	END=156911237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	156911238	.	A	.	.	PASS	END=156911244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	156911654	.	A	.	.	PASS	END=156911697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	156911698	.	G	.	.	PASS	END=156911761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	156911762	.	C	.	.	PASS	END=156911822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	156912478	.	T	.	.	PASS	END=156912573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	156912574	.	T	.	.	PASS	END=156912577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	156913725	.	A	.	.	PASS	END=156913739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	156913740	.	G	.	.	PASS	END=156913753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	156913754	.	C	.	.	PASS	END=156913776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	156913777	.	A	.	.	PASS	END=156913809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	156913810	.	G	.	.	PASS	END=156913890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	156913891	.	A	.	.	PASS	END=156913896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	156914138	.	C	.	.	PASS	END=156914154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	156914155	.	G	.	.	PASS	END=156914237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	156914809	.	A	.	.	PASS	END=156914843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	156914844	.	C	.	.	PASS	END=156914954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr1	156914955	.	G	.	.	PASS	END=156914988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	156914989	.	C	.	.	PASS	END=156914991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	156915835	.	A	.	.	PASS	END=156915951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	156915952	.	C	.	.	PASS	END=156915956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	156916452	.	A	.	.	PASS	END=156916579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	156916580	.	C	.	.	PASS	END=156916581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	156916718	.	G	.	.	PASS	END=156916758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	156916759	.	A	.	.	PASS	END=156916815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	156916816	.	G	.	.	PASS	END=156916817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	156917094	.	A	.	.	PASS	END=156917223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr1	156917224	.	G	.	.	PASS	END=156917244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	156917559	.	A	.	.	PASS	END=156917591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	156917592	.	C	.	.	PASS	END=156917683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	156917684	.	C	.	.	PASS	END=156917719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	156917720	.	A	.	.	PASS	END=156917738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	156917739	.	C	.	.	PASS	END=156917750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	156917947	.	G	.	.	PASS	END=156917982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	156917983	.	T	.	.	PASS	END=156918046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	156918109	.	A	.	.	PASS	END=156918148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr1	156918149	.	G	.	.	PASS	END=156918264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:290:99:60
chr1	156918265	.	G	.	.	PASS	END=156918291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	156918292	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:209:99:60
chr1	156918341	.	G	.	.	PASS	END=156918365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	156918366	.	T	.	.	PASS	END=156918387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	156918388	.	C	.	.	PASS	END=156918415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	156918416	.	A	.	.	PASS	END=156918440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	156921363	.	A	.	.	PASS	END=156921408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	156921409	.	T	.	.	PASS	END=156921489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	156921490	.	G	.	.	PASS	END=156921493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	156924592	.	A	.	.	PASS	END=156924639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	156924640	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:63:60
chr1	156924641	.	A	.	.	PASS	END=156924693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	156924694	.	G	.	.	PASS	END=156924748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	156925493	.	A	.	.	PASS	END=156925525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	156925526	.	G	.	.	PASS	END=156925593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	156926210	.	A	.	.	PASS	END=156926256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	156926257	.	A	.	.	PASS	END=156926333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	156926334	.	T	.	.	PASS	END=156926356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	156926357	.	C	.	.	PASS	END=156926358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	156927546	.	C	.	.	PASS	END=156927645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	156928532	.	A	.	.	PASS	END=156928626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	156928627	.	A	.	.	PASS	END=156928651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	156928652	.	T	.	.	PASS	END=156928658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	156928836	.	A	.	.	PASS	END=156928916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	156928917	.	T	.	.	PASS	END=156928936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	156930182	.	A	.	.	PASS	END=156930280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	156930281	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:144:99:60
chr1	156931467	.	A	.	.	PASS	END=156931569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	156932993	.	A	.	.	PASS	END=156933020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	156933021	.	A	.	.	PASS	END=156933098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	156933300	.	G	.	.	PASS	END=156933348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	156933349	.	G	.	.	PASS	END=156933352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	156933353	.	C	.	183.49	PASS	DP=79;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:61:70:99:60:99
chr1	156933354	.	A	.	.	PASS	END=156933361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	156933362	.	A	.	165.44	PASS	DP=76;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:60:76:99:60:99
chr1	156933363	.	A	.	.	PASS	END=156933365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	156933366	.	C	G	116.96	LowQD;SB	BaseQRankSum=-2.735;DP=75;Dels=0.00;FS=26.891;HRun=2;HaplotypeScore=14.3471;MQ=60;MQ0=0;MQRankSum=-0.744;QD=1.56;ReadPosRankSum=0.200;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:59,16:75:99:147,0,1459:60:99:0.213
chr1	156933367	.	T	.	.	PASS	END=156933371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	156933372	.	G	T	25.50	LowGQX;LowQD;SB	BaseQRankSum=-3.597;DP=74;Dels=0.00;FS=24.677;HRun=0;HaplotypeScore=14.3471;MQ=60;MQ0=0;MQRankSum=0.296;QD=0.34;ReadPosRankSum=2.186;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:56,18:74:55.48:55,0,1561:60:26:0.243
chr1	156933373	.	C	.	.	PASS	END=156933392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:87:60
chr1	156933393	.	G	.	.	PASS	END=156933397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:84:60
chr1	156933398	.	A	.	.	PASS	END=156933399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:75:60
chr1	156937737	.	T	.	.	PASS	END=156937780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	156937781	.	G	.	.	PASS	END=156937826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:257:99:60
chr1	156937827	.	G	.	.	PASS	END=156937918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:296:99:60
chr1	156939063	.	C	.	.	PASS	END=156939098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	156939099	.	G	.	.	PASS	END=156939142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	156939143	.	G	.	.	PASS	END=156939162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	156939763	.	A	.	.	PASS	END=156939798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	156939799	.	G	.	.	PASS	END=156939862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	156941487	.	A	.	.	PASS	END=156941514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	156941515	.	T	.	.	PASS	END=156941609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:95:60
chr1	156941610	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:71:99:60
chr1	156946761	.	G	.	.	PASS	END=156946794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	156946795	.	G	.	.	PASS	END=156946860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	156947974	.	A	.	.	PASS	END=156948001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	156948002	.	A	.	.	PASS	END=156948015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	156948016	.	T	.	.	PASS	END=156948094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	156948095	.	G	.	.	PASS	END=156948153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	156948154	.	T	.	.	PASS	END=156948176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	156949000	.	T	.	.	PASS	END=156949076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	156949077	.	A	.	.	PASS	END=156949099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	156950204	.	G	.	.	PASS	END=156950299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	156950300	.	A	.	.	PASS	END=156950303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	156954129	.	A	.	.	PASS	END=156954142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	156954143	.	A	.	.	PASS	END=156954155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	156954156	.	A	.	.	PASS	END=156954231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	156955870	.	T	.	.	PASS	END=156955944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	156955945	.	A	.	.	PASS	END=156955969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	157014057	.	C	.	.	PASS	END=157014148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	157014149	.	G	.	.	PASS	END=157014156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	157062439	.	A	.	.	LowGQX	END=157062921	GT	./.
chr1	157067617	.	C	.	.	LowGQX	END=157067782	GT	./.
chr1	157068496	.	A	.	.	LowGQX	END=157068601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157068602	.	T	.	.	LowGQX	END=157068689	GT	./.
chr1	157068931	.	A	.	.	LowGQX	END=157069105	GT	./.
chr1	157069106	.	C	.	.	LowGQX	END=157069172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157069237	.	A	.	.	LowGQX	END=157069336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157094632	.	T	.	.	LowGQX	END=157094841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157094842	.	G	.	.	LowGQX	END=157095771	GT	./.
chr1	157103870	.	A	.	.	LowGQX	END=157104021	GT	./.
chr1	157105261	.	A	.	.	LowGQX	END=157105360	GT	./.
chr1	157105361	.	C	.	.	LowGQX	END=157105473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	157105474	.	T	.	.	LowGQX	END=157105502	GT	./.
chr1	157106007	.	G	.	.	LowGQX	END=157106050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157106051	.	A	.	.	LowGQX	.	GT	./.
chr1	157106052	.	C	.	.	LowGQX	END=157106071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157106072	.	C	.	.	LowGQX	.	GT	./.
chr1	157106073	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157106074	.	T	.	.	LowGQX	.	GT	./.
chr1	157106075	.	C	.	.	LowGQX	END=157106095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157106096	.	C	.	.	LowGQX	END=157106097	GT	./.
chr1	157106098	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157106099	.	C	.	.	LowGQX	.	GT	./.
chr1	157106100	.	T	.	.	LowGQX	END=157106102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157106103	.	A	.	.	LowGQX	.	GT	./.
chr1	157106104	.	C	.	.	LowGQX	END=157106116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157106117	.	T	.	.	LowGQX	.	GT	./.
chr1	157106118	.	T	.	.	LowGQX	END=157106135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157106136	.	G	.	.	LowGQX	.	GT	./.
chr1	157106137	.	G	.	.	LowGQX	END=157106141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157106142	.	C	.	.	LowGQX	.	GT	./.
chr1	157106143	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157106144	.	T	.	.	LowGQX	.	GT	./.
chr1	157106145	.	T	.	.	LowGQX	END=157106148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157106149	.	A	.	.	LowGQX	END=157106150	GT	./.
chr1	157106151	.	C	.	.	LowGQX	END=157106154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157106155	.	C	.	.	LowGQX	END=157106171	GT	./.
chr1	157485391	.	T	.	.	LowGQX	END=157485556	GT	./.
chr1	157485598	.	G	.	.	LowGQX	END=157485697	GT	./.
chr1	157488204	.	A	.	.	LowGQX	END=157488303	GT	./.
chr1	157488482	.	G	.	.	LowGQX	END=157488581	GT	./.
chr1	157489497	.	T	.	.	LowGQX	END=157489596	GT	./.
chr1	157490219	.	A	.	.	LowGQX	END=157490339	GT	./.
chr1	157490805	.	A	.	.	LowGQX	END=157490808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	157490809	.	G	.	.	LowGQX	END=157490810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	157490811	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	157490812	.	A	.	.	LowGQX	END=157490814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	157490815	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	157490816	.	A	.	.	LowGQX	END=157490817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	157490818	.	A	.	.	PASS	END=157490823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	157490824	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	157490825	.	C	.	.	PASS	END=157490835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	157490836	.	C	.	.	PASS	END=157490847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	157490848	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	157490849	.	G	.	.	PASS	END=157490864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	157490865	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	157490866	.	C	.	.	PASS	END=157490885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	157490886	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:3:60
chr1	157490887	.	T	.	.	PASS	END=157490888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	157490889	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:14:60
chr1	157490890	.	G	.	.	PASS	END=157490894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	157490895	.	C	.	.	PASS	END=157490903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	157490904	.	G	.	.	PASS	END=157490907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	157490908	.	A	.	.	PASS	END=157490916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	157490917	.	C	.	.	PASS	END=157490929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	157490930	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:48:60
chr1	157490931	.	C	.	.	PASS	END=157490965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	157490966	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:57:60
chr1	157490967	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:75:60
chr1	157490968	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:42:60
chr1	157490969	.	G	.	.	PASS	END=157490980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	157490981	.	G	.	.	PASS	END=157491063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	157491064	.	A	.	.	PASS	END=157491071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	157491072	.	A	.	.	PASS	END=157491073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	157491074	.	A	.	.	PASS	END=157491076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:48:60
chr1	157491077	.	C	.	.	PASS	END=157491084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	157494027	.	G	.	.	PASS	END=157494031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	157494032	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	157494033	.	T	.	.	PASS	END=157494048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	157494049	.	G	.	.	PASS	END=157494062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	157494063	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:36:60
chr1	157494064	.	C	.	.	PASS	END=157494066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	157494067	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	157494068	.	C	.	.	PASS	END=157494085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	157494086	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	157494087	.	C	.	.	PASS	END=157494096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	157494097	.	G	.	.	PASS	END=157494109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	157494110	.	A	.	.	PASS	END=157494112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	157494113	.	C	.	.	PASS	END=157494125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	157494126	.	C	.	.	PASS	END=157494127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	157494128	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:15:60
chr1	157494129	.	A	.	.	PASS	END=157494136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	157494137	.	A	.	.	PASS	END=157494138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	157494139	.	T	.	.	PASS	END=157494160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	157494161	.	G	.	.	PASS	END=157494178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	157494179	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:53:60
chr1	157494180	.	C	.	.	PASS	END=157494182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	157494183	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:33:60
chr1	157494184	.	T	.	.	PASS	END=157494200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	157494201	.	T	.	.	PASS	END=157494231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	157494232	.	C	.	.	PASS	END=157494255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	157494256	.	T	.	.	PASS	END=157494335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	157494336	.	G	.	.	PASS	END=157494349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	157497405	.	A	.	.	PASS	END=157497406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	157497407	.	C	.	.	PASS	END=157497416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	157497417	.	G	.	.	PASS	END=157497434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	157497435	.	G	.	.	PASS	END=157497463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	157497464	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:96:60
chr1	157497465	.	A	.	.	PASS	END=157497466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:60:60
chr1	157497467	.	A	.	.	PASS	END=157497497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	157497498	.	A	.	.	PASS	END=157497516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	157497517	.	T	.	.	PASS	END=157497539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:96:60
chr1	157497540	.	G	.	.	PASS	END=157497601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	157497602	.	C	.	.	PASS	END=157497653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	157497654	.	C	.	.	PASS	END=157497679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	157497680	.	C	.	.	PASS	END=157497687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	157504057	.	G	.	.	LowGQX	END=157504156	GT	./.
chr1	157504305	.	A	.	.	LowGQX	END=157504358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157504359	.	A	.	.	LowGQX	.	GT	./.
chr1	157504360	.	G	.	.	LowGQX	END=157504447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157504448	.	C	.	.	LowGQX	.	GT	./.
chr1	157504449	.	C	.	.	LowGQX	END=157504560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157504561	.	A	.	.	LowGQX	END=157504684	GT	./.
chr1	157508874	.	A	.	.	LowGQX	END=157508903	GT	./.
chr1	157508904	.	G	.	.	LowGQX	END=157509024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157509025	.	C	T	52.84	LowGQ;LowGQX	DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=17.61;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:6.02:84,6,0:60:6:1.000
chr1	157509026	.	C	.	.	LowGQX	END=157509058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157509059	.	A	.	.	LowGQX	END=157509060	GT	./.
chr1	157509061	.	C	.	.	LowGQX	END=157509081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157509082	.	A	.	.	LowGQX	END=157509156	GT	./.
chr1	157512647	.	A	.	.	LowGQX	END=157512667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	157512668	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	157512669	.	G	.	.	LowGQX	END=157512671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157512672	.	T	.	.	LowGQX	.	GT	./.
chr1	157512673	.	T	.	.	LowGQX	END=157512699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157512700	.	C	.	.	LowGQX	END=157512929	GT	./.
chr1	157514050	.	A	.	.	LowGQX	END=157514091	GT	./.
chr1	157514092	.	G	.	.	LowGQX	END=157514338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157514609	.	T	.	.	LowGQX	END=157514871	GT	./.
chr1	157514872	.	G	.	.	LowGQX	END=157514878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157515987	.	C	.	.	LowGQX	END=157516000	GT	./.
chr1	157516001	.	G	.	.	LowGQX	END=157516035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157516036	.	A	.	.	LowGQX	.	GT	./.
chr1	157516037	.	A	.	.	LowGQX	END=157516086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157516731	.	A	.	.	LowGQX	END=157516856	GT	./.
chr1	157516857	.	G	.	.	LowGQX	END=157516970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157516971	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	157516972	.	G	.	.	LowGQX	END=157516989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	157517125	.	A	.	.	LowGQX	END=157517224	GT	./.
chr1	157519311	.	A	.	.	LowGQX	END=157519410	GT	./.
chr1	157522088	.	C	.	.	LowGQX	END=157522187	GT	./.
chr1	157545308	.	A	.	.	LowGQX	END=157545407	GT	./.
chr1	157545455	.	G	.	.	LowGQX	END=157545504	GT	./.
chr1	157545505	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157545506	.	T	.	.	LowGQX	END=157545507	GT	./.
chr1	157545508	.	C	.	.	LowGQX	END=157545513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157545514	.	G	.	.	LowGQX	.	GT	./.
chr1	157545515	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157545516	.	A	.	.	LowGQX	.	GT	./.
chr1	157545517	.	T	.	.	LowGQX	END=157545520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157545521	.	C	.	.	LowGQX	.	GT	./.
chr1	157545522	.	T	.	.	LowGQX	END=157545531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157545532	.	A	.	.	LowGQX	END=157545533	GT	./.
chr1	157545534	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157545535	.	A	.	.	LowGQX	END=157545536	GT	./.
chr1	157545537	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157545538	.	A	.	.	LowGQX	.	GT	./.
chr1	157545539	.	T	.	.	LowGQX	END=157545541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157545542	.	C	.	.	LowGQX	.	GT	./.
chr1	157545543	.	T	.	.	LowGQX	END=157545553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157545554	.	C	.	.	LowGQX	.	GT	./.
chr1	157548249	.	T	.	.	LowGQX	END=157548348	GT	./.
chr1	157548492	.	C	.	.	LowGQX	END=157548651	GT	./.
chr1	157550075	.	G	.	.	LowGQX	.	GT	./.
chr1	157550076	.	A	.	.	LowGQX	END=157550079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157550080	.	T	.	.	LowGQX	.	GT	./.
chr1	157550081	.	A	.	.	LowGQX	END=157550083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157550084	.	A	.	.	LowGQX	END=157550087	GT	./.
chr1	157550088	.	A	.	.	LowGQX	END=157550104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157550105	.	T	.	.	LowGQX	.	GT	./.
chr1	157550106	.	C	.	.	LowGQX	END=157550119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157550120	.	T	.	.	LowGQX	.	GT	./.
chr1	157550121	.	C	.	.	LowGQX	END=157550123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157550124	.	C	.	.	LowGQX	.	GT	./.
chr1	157550125	.	C	.	.	LowGQX	END=157550141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157550142	.	C	.	.	LowGQX	.	GT	./.
chr1	157550143	.	A	.	.	LowGQX	END=157550174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157551319	.	A	.	.	LowGQX	END=157551436	GT	./.
chr1	157555956	.	A	.	.	LowGQX	END=157556067	GT	./.
chr1	157556068	.	G	.	.	LowGQX	END=157556247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157557064	.	A	.	.	LowGQX	END=157557067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157557068	.	T	.	.	LowGQX	END=157557132	GT	./.
chr1	157557133	.	C	.	.	LowGQX	END=157557293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157557294	.	A	.	.	LowGQX	END=157557352	GT	./.
chr1	157557653	.	A	.	.	LowGQX	END=157557911	GT	./.
chr1	157558992	.	A	.	.	LowGQX	END=157559250	GT	./.
chr1	157566079	.	A	.	.	LowGQX	END=157566178	GT	./.
chr1	157567670	.	T	.	.	LowGQX	END=157567769	GT	./.
chr1	157646480	.	A	.	.	LowGQX	END=157646510	GT	./.
chr1	157646511	.	A	.	.	LowGQX	END=157646579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157648498	.	G	.	.	PASS	END=157648521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	157648522	.	A	.	.	PASS	END=157648648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	157648698	.	C	.	.	PASS	END=157648757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	157648758	.	A	.	.	PASS	END=157648783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	157648784	.	A	.	.	PASS	END=157648797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	157650477	.	T	.	.	PASS	END=157650576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	157650769	.	A	.	.	PASS	END=157650838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	157650839	.	A	.	.	PASS	END=157650857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	157650858	.	A	.	.	PASS	END=157650868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	157650869	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:67:60
chr1	157650870	.	G	.	.	PASS	END=157650891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	157652971	.	T	.	.	PASS	END=157652998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	157652999	.	G	.	.	PASS	END=157653007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	157653008	.	T	.	.	PASS	END=157653070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	157659586	.	A	.	.	PASS	END=157659707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	157659708	.	C	.	.	PASS	END=157659709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:59
chr1	157660043	.	A	.	.	PASS	END=157660064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	157660065	.	A	.	.	PASS	END=157660128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	157660129	.	T	.	.	PASS	END=157660218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	157660219	.	T	.	.	PASS	END=157660291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	157660292	.	C	.	.	PASS	END=157660308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	157660309	.	G	.	.	PASS	END=157660324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	157660325	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:74:99:60
chr1	157665117	.	A	.	.	PASS	END=157665136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	157665137	.	C	.	.	PASS	END=157665209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	157665210	.	A	.	.	PASS	END=157665288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	157665289	.	A	.	.	PASS	END=157665357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	157665358	.	C	.	.	PASS	END=157665380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	157665381	.	A	.	.	PASS	END=157665404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	157665405	.	A	.	.	PASS	END=157665415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	157665828	.	A	.	.	PASS	END=157665859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	157665860	.	G	.	.	PASS	END=157665928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	157665929	.	C	.	.	PASS	END=157665987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	157665988	.	T	.	.	PASS	END=157666112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	157666113	.	G	.	.	PASS	END=157666139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	157666928	.	A	.	.	PASS	END=157666934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	157666935	.	A	.	.	PASS	END=157667065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	157667066	.	T	.	.	PASS	END=157667082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	157667083	.	C	.	.	PASS	END=157667148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	157667149	.	G	.	.	PASS	END=157667216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	157667447	.	A	.	.	PASS	END=157667601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	157667602	.	C	.	.	PASS	END=157667702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	157667703	.	A	.	.	PASS	END=157667711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	157668172	.	A	.	.	PASS	END=157668197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	157668198	.	C	.	.	PASS	END=157668305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	157668306	.	T	.	.	PASS	END=157668370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	157668371	.	G	.	.	PASS	END=157668389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	157668390	.	T	C	496.87	PASS	BaseQRankSum=-0.729;DP=32;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=1.650;QD=15.53;ReadPosRankSum=0.115;SB=-122.58	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,19:32:99:527,0,357:60:99:0.594
chr1	157668391	.	G	.	.	PASS	END=157668421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	157669443	.	A	.	.	PASS	END=157669465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	157669466	.	A	.	.	PASS	END=157669542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	157670215	.	G	.	.	PASS	END=157670223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	157670224	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:63:60
chr1	157670225	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:99:60
chr1	157670226	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:75:60
chr1	157670227	.	C	.	.	PASS	END=157670228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	157670229	.	A	.	.	PASS	END=157670289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	157670290	.	C	G	904.55	PASS	BaseQRankSum=-2.378;DP=79;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=20.9251;MQ=60;MQ0=0;MQRankSum=-0.564;QD=11.45;ReadPosRankSum=0.760;SB=-427.90	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:40,39:79:99:935,0,963:60:99:0.494
chr1	157670291	.	G	.	.	PASS	END=157670314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	157716496	.	G	.	.	LowGQX	END=157716595	GT	./.
chr1	157716626	.	G	.	.	LowGQX	END=157716725	GT	./.
chr1	157718326	.	A	.	.	LowGQX	END=157718402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157718403	.	A	.	.	LowGQX	END=157718425	GT	./.
chr1	157718658	.	C	.	.	LowGQX	END=157718757	GT	./.
chr1	157719404	.	T	.	.	LowGQX	END=157719431	GT	./.
chr1	157719432	.	G	.	.	LowGQX	END=157719503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157736585	.	T	.	.	LowGQX	END=157736763	GT	./.
chr1	157737019	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	157737020	.	C	.	.	LowGQX	END=157737022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	157737023	.	G	.	.	LowGQX	END=157737031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	157737032	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	157737033	.	C	.	.	LowGQX	END=157737043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	157737044	.	T	.	.	LowGQX	END=157737051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	157737052	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:1:60
chr1	157737053	.	T	.	.	LowGQX	END=157737061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	157737062	.	A	.	.	LowGQX	END=157737063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	157737064	.	G	.	.	LowGQX	END=157737076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	157737077	.	T	.	.	PASS	END=157737078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	157737079	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	157737080	.	C	.	.	PASS	END=157737083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	157737084	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	157737085	.	G	.	.	PASS	END=157737092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	157737093	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	157737094	.	A	.	.	PASS	END=157737101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	157737102	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	157737103	.	T	.	.	PASS	END=157737116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	157737117	.	G	.	.	PASS	END=157737118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	157737119	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:27:60
chr1	157737120	.	T	.	.	PASS	END=157737133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	157737134	.	C	.	.	PASS	END=157737153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	157737154	.	G	.	.	PASS	END=157737158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:60:60
chr1	157737159	.	C	.	.	PASS	END=157737191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	157737192	.	A	.	.	PASS	END=157737257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	157737258	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:66:60
chr1	157737259	.	C	.	.	PASS	END=157737282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	157737283	.	A	.	.	PASS	END=157737287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	157737288	.	G	.	.	PASS	END=157737292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:60
chr1	157737293	.	A	.	.	PASS	END=157737294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:60
chr1	157737295	.	T	.	.	PASS	END=157737298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	157737299	.	A	.	.	PASS	END=157737309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	157737310	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:25:60
chr1	157737311	.	A	.	.	PASS	END=157737316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	157737317	.	G	.	.	PASS	END=157737318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr1	157737319	.	T	.	.	PASS	END=157737322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	157737323	.	A	.	.	PASS	END=157737329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	157737330	.	A	.	.	PASS	END=157737332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:33:60
chr1	157737333	.	T	.	.	PASS	END=157737338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	157737339	.	G	.	.	PASS	END=157737342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	157737343	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:6:60
chr1	157737344	.	A	.	.	PASS	END=157737349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	157737350	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	157737351	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:39:60
chr1	157737352	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	157737353	.	A	.	.	PASS	END=157737359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	157737360	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	157737361	.	C	.	.	PASS	END=157737362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	157737363	.	A	.	.	LowGQX	END=157737364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	157737365	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	157737366	.	C	.	.	LowGQX	END=157737367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	157737368	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	157737369	.	C	.	.	LowGQX	END=157737370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	157737371	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	157737372	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:1:60
chr1	157737373	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	157737374	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	157737375	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:1:60
chr1	157737376	.	A	.	.	LowGQX	END=157737378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	157737379	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	157737380	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	157737381	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	157737382	.	G	.	.	LowGQX	END=157737384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	157737385	.	C	.	.	LowGQX	END=157737386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	157737387	.	T	.	.	LowGQX	END=157737388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	157737389	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	157737390	.	C	.	.	LowGQX	END=157737392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	157737393	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	157737394	.	A	.	.	LowGQX	END=157737396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	157737397	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	157737398	.	C	.	.	LowGQX	END=157737399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	157737400	.	G	.	.	LowGQX	END=157737403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	157737404	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr1	157737405	.	A	.	.	LowGQX	END=157737408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	157737409	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	157737410	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	157737411	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	157737412	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	157737413	.	C	.	48.05	LowGQX	DP=10;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:18.06:60:18
chr1	157737414	.	A	.	.	LowGQX	END=157737418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	157737419	.	C	.	.	PASS	END=157737420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	157737421	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	157737422	.	A	.	.	PASS	END=157737425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	157738202	.	A	.	.	LowGQX	END=157738493	GT	./.
chr1	157739642	.	T	.	.	LowGQX	END=157739942	GT	./.
chr1	157740197	.	A	.	.	LowGQX	END=157740423	GT	./.
chr1	157740424	.	A	.	.	LowGQX	END=157740446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157740447	.	G	.	.	LowGQX	.	GT	./.
chr1	157740448	.	T	.	.	LowGQX	END=157740458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157744188	.	G	.	.	LowGQX	END=157744195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157744196	.	A	.	.	LowGQX	.	GT	./.
chr1	157744197	.	A	.	.	LowGQX	END=157744287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157745526	.	T	.	.	LowGQX	END=157745625	GT	./.
chr1	157746799	.	C	.	.	LowGQX	END=157746898	GT	./.
chr1	157765875	.	A	.	.	LowGQX	END=157765974	GT	./.
chr1	157766857	.	A	.	.	LowGQX	END=157766956	GT	./.
chr1	157767530	.	T	.	.	LowGQX	.	GT	./.
chr1	157767531	.	A	.	.	LowGQX	END=157767534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157767535	.	A	.	.	LowGQX	END=157767629	GT	./.
chr1	157767644	.	C	.	.	LowGQX	END=157767743	GT	./.
chr1	157767943	.	A	.	.	LowGQX	END=157768042	GT	./.
chr1	157769812	.	T	.	.	LowGQX	END=157769911	GT	./.
chr1	157771249	.	A	.	.	LowGQX	END=157771320	GT	./.
chr1	157771321	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157771322	.	T	.	.	LowGQX	END=157771323	GT	./.
chr1	157771324	.	A	.	.	LowGQX	END=157771348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157771349	.	C	.	.	LowGQX	.	GT	./.
chr1	157771350	.	T	.	.	LowGQX	END=157771354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157771355	.	G	.	.	LowGQX	.	GT	./.
chr1	157771356	.	C	.	.	LowGQX	END=157771365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157771366	.	C	.	.	LowGQX	.	GT	./.
chr1	157771367	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157771368	.	C	.	.	LowGQX	.	GT	./.
chr1	157771369	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157771703	.	A	.	.	PASS	END=157771826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	157771827	.	G	.	.	PASS	END=157771846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	157771847	.	G	.	.	PASS	END=157771878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	157771879	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:75:60
chr1	157771880	.	C	T	539.95	SB	BaseQRankSum=-0.614;DP=32;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.8832;MQ=60;MQ0=0;MQRankSum=-0.499;QD=16.87;ReadPosRankSum=0.614;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,19:32:99:570,0,337:60:99:0.594
chr1	157771881	.	G	.	.	PASS	END=157771893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	157771894	.	T	.	.	PASS	END=157771896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	157771897	.	G	.	.	PASS	END=157771901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:81:60
chr1	157771902	.	T	.	.	PASS	END=157771904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	157771905	.	C	.	.	PASS	END=157771907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	157771908	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:48:60
chr1	157771909	.	G	.	.	PASS	END=157771913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	157771914	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:48:60
chr1	157771915	.	C	.	.	PASS	END=157771937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	157771938	.	T	.	.	PASS	END=157771953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	157771954	.	T	.	.	PASS	END=157771958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	157771959	.	A	.	.	PASS	END=157771963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	157771964	.	G	.	.	PASS	END=157771981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	157771982	.	G	.	.	PASS	END=157771985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	157772165	.	A	.	.	LowGQX	END=157772456	GT	./.
chr1	157773633	.	A	.	.	LowGQX	END=157773635	GT	./.
chr1	157773636	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157773637	.	T	.	.	LowGQX	END=157773640	GT	./.
chr1	157773641	.	C	.	.	LowGQX	END=157773647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157773648	.	C	.	.	LowGQX	END=157773649	GT	./.
chr1	157773650	.	G	.	.	LowGQX	END=157773656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157773657	.	C	.	.	LowGQX	.	GT	./.
chr1	157773658	.	C	.	.	LowGQX	END=157773659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157773660	.	G	.	.	LowGQX	END=157773661	GT	./.
chr1	157773662	.	T	.	.	LowGQX	END=157773663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157773664	.	C	.	.	LowGQX	END=157773665	GT	./.
chr1	157773666	.	C	.	.	LowGQX	END=157773667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157773668	.	A	.	.	LowGQX	.	GT	./.
chr1	157773669	.	G	.	.	LowGQX	END=157773675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157773676	.	G	.	.	LowGQX	.	GT	./.
chr1	157773677	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157773678	.	C	.	.	LowGQX	END=157773679	GT	./.
chr1	157773680	.	C	.	.	LowGQX	END=157773686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157773687	.	C	.	.	LowGQX	END=157773903	GT	./.
chr1	157776853	.	A	.	.	LowGQX	END=157776952	GT	./.
chr1	157789763	.	C	.	.	LowGQX	END=157789862	GT	./.
chr1	157801707	.	A	.	.	LowGQX	END=157801806	GT	./.
chr1	157802980	.	A	.	.	LowGQX	END=157803304	GT	./.
chr1	157804195	.	A	.	.	LowGQX	END=157804317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	157804318	.	T	.	.	LowGQX	END=157804394	GT	./.
chr1	157804395	.	C	.	.	LowGQX	END=157804505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	157804506	.	C	.	.	LowGQX	END=157804540	GT	./.
chr1	157805623	.	A	.	.	LowGQX	END=157805672	GT	./.
chr1	157805673	.	C	.	.	LowGQX	END=157805716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	157805717	.	C	.	.	LowGQX	.	GT	./.
chr1	157805718	.	T	.	.	LowGQX	END=157805782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	157805783	.	G	.	.	LowGQX	END=157805824	GT	./.
chr1	157805825	.	G	.	.	LowGQX	END=157805903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157805904	.	A	.	.	LowGQX	.	GT	./.
chr1	157805905	.	G	.	.	LowGQX	END=157805947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	157809082	.	T	.	.	LowGQX	END=157809237	GT	./.
chr1	157811428	.	T	.	.	LowGQX	END=157811527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	157963383	.	C	.	.	LowGQX	END=157963542	GT	./.
chr1	158045902	.	G	.	.	LowGQX	END=158045911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158045912	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158045913	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158045914	.	C	.	.	LowGQX	END=158045932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158045933	.	C	.	.	LowGQX	.	GT	./.
chr1	158045934	.	T	.	.	LowGQX	END=158045937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158045938	.	C	.	.	LowGQX	.	GT	./.
chr1	158045939	.	A	.	.	LowGQX	END=158045944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158045945	.	T	.	.	LowGQX	.	GT	./.
chr1	158045946	.	G	.	.	LowGQX	END=158045954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158045955	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158045956	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	158045957	.	A	.	.	LowGQX	.	GT	./.
chr1	158045958	.	G	.	.	LowGQX	END=158045963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158045964	.	C	.	.	LowGQX	.	GT	./.
chr1	158045965	.	G	.	.	LowGQX	END=158045969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158045970	.	C	.	.	LowGQX	.	GT	./.
chr1	158045971	.	C	.	.	LowGQX	END=158045972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158045973	.	C	.	.	LowGQX	.	GT	./.
chr1	158045974	.	T	.	.	LowGQX	END=158045982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158045983	.	C	.	.	LowGQX	.	GT	./.
chr1	158045984	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	158045985	.	C	.	.	LowGQX	.	GT	./.
chr1	158045986	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158045987	.	A	.	.	LowGQX	.	GT	./.
chr1	158045988	.	C	.	.	LowGQX	END=158045989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158045990	.	A	.	.	LowGQX	.	GT	./.
chr1	158045991	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158045992	.	T	.	.	LowGQX	END=158045997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158045998	.	A	.	.	LowGQX	.	GT	./.
chr1	158045999	.	T	.	.	LowGQX	END=158046003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158046004	.	C	.	.	LowGQX	END=158046006	GT	./.
chr1	158046007	.	T	.	.	LowGQX	END=158046009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158046010	.	A	.	.	LowGQX	END=158046014	GT	./.
chr1	158046015	.	G	.	.	LowGQX	END=158046016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158046017	.	A	.	.	LowGQX	END=158046018	GT	./.
chr1	158046019	.	G	.	.	LowGQX	END=158046034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158046035	.	T	.	.	LowGQX	.	GT	./.
chr1	158046036	.	G	.	.	LowGQX	END=158046038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158046039	.	C	.	.	LowGQX	END=158046054	GT	./.
chr1	158047779	.	A	.	.	LowGQX	END=158047808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158047809	.	C	.	.	LowGQX	.	GT	./.
chr1	158047810	.	G	.	.	LowGQX	END=158047904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158047905	.	T	.	.	LowGQX	END=158047932	GT	./.
chr1	158054211	.	G	.	.	LowGQX	END=158054369	GT	./.
chr1	158056385	.	G	.	.	LowGQX	END=158056536	GT	./.
chr1	158057543	.	A	.	.	LowGQX	END=158057652	GT	./.
chr1	158057794	.	A	.	.	LowGQX	END=158057946	GT	./.
chr1	158058115	.	A	.	.	LowGQX	END=158058169	GT	./.
chr1	158058170	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158058171	.	A	.	.	LowGQX	.	GT	./.
chr1	158058172	.	T	.	.	LowGQX	END=158058177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158058178	.	C	.	.	LowGQX	END=158058179	GT	./.
chr1	158058180	.	T	.	.	LowGQX	END=158058182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158058183	.	C	.	.	LowGQX	.	GT	./.
chr1	158058184	.	C	.	.	LowGQX	END=158058199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158058200	.	A	.	.	LowGQX	END=158058201	GT	./.
chr1	158058202	.	T	.	.	LowGQX	END=158058203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158058204	.	C	.	.	LowGQX	END=158058205	GT	./.
chr1	158058206	.	C	.	.	LowGQX	END=158058208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158058209	.	C	.	.	LowGQX	.	GT	./.
chr1	158058210	.	T	.	.	LowGQX	END=158058211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158058212	.	A	.	.	LowGQX	END=158058214	GT	./.
chr1	158058215	.	C	.	.	LowGQX	END=158058217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158058218	.	A	.	.	LowGQX	END=158058221	GT	./.
chr1	158058222	.	G	.	.	LowGQX	END=158058223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158058224	.	A	.	.	LowGQX	.	GT	./.
chr1	158058225	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158058226	.	C	.	.	LowGQX	END=158058229	GT	./.
chr1	158058230	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158058231	.	A	.	.	LowGQX	.	GT	./.
chr1	158058232	.	G	.	.	LowGQX	END=158058233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158058234	.	A	.	.	LowGQX	END=158058235	GT	./.
chr1	158058236	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158058237	.	C	.	.	LowGQX	END=158058240	GT	./.
chr1	158058241	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158058242	.	A	.	.	LowGQX	.	GT	./.
chr1	158058243	.	T	.	.	LowGQX	END=158058246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158059223	.	G	.	.	LowGQX	END=158059403	GT	./.
chr1	158059404	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158059405	.	G	.	.	LowGQX	.	GT	./.
chr1	158059406	.	C	.	.	LowGQX	END=158059407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158059408	.	C	.	.	LowGQX	.	GT	./.
chr1	158059409	.	T	.	.	LowGQX	END=158059410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158059411	.	T	.	.	LowGQX	.	GT	./.
chr1	158059412	.	G	.	.	LowGQX	END=158059415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158059416	.	A	.	.	LowGQX	.	GT	./.
chr1	158059417	.	C	.	.	LowGQX	END=158059420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158059506	.	A	.	.	LowGQX	END=158059511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158059512	.	C	.	.	LowGQX	.	GT	./.
chr1	158059513	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158059514	.	C	.	.	LowGQX	.	GT	./.
chr1	158059515	.	C	.	.	LowGQX	END=158059519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158059520	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	158059521	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158059522	.	T	.	.	LowGQX	.	GT	./.
chr1	158059523	.	C	.	.	LowGQX	END=158059524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158059525	.	A	.	.	LowGQX	END=158059527	GT	./.
chr1	158059528	.	G	.	.	LowGQX	END=158059534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158059535	.	T	.	.	LowGQX	.	GT	./.
chr1	158059536	.	G	.	.	LowGQX	END=158059551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158059552	.	G	.	.	LowGQX	END=158059610	GT	./.
chr1	158061146	.	A	.	.	LowGQX	END=158061348	GT	./.
chr1	158063127	.	A	.	.	LowGQX	END=158063238	GT	./.
chr1	158063411	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158063412	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	158063413	.	G	.	.	LowGQX	END=158063416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158063417	.	C	.	.	LowGQX	.	GT	./.
chr1	158063418	.	A	.	.	LowGQX	END=158063423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158063424	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	158063425	.	T	.	.	LowGQX	END=158063428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158063429	.	C	.	.	LowGQX	.	GT	./.
chr1	158063430	.	C	.	.	LowGQX	END=158063431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158063432	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158063433	.	A	.	.	LowGQX	END=158063438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158063439	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158063440	.	T	.	.	LowGQX	END=158063441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158063442	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158063443	.	A	.	.	LowGQX	END=158063446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158063447	.	C	.	.	LowGQX	.	GT	./.
chr1	158063448	.	A	.	.	LowGQX	END=158063450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158063451	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158063452	.	T	.	.	LowGQX	END=158063453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158063454	.	G	.	.	LowGQX	.	GT	./.
chr1	158063455	.	A	.	.	LowGQX	END=158063461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158063462	.	G	.	.	LowGQX	.	GT	./.
chr1	158063463	.	A	.	.	LowGQX	END=158063465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158063466	.	C	.	.	LowGQX	.	GT	./.
chr1	158063467	.	G	.	.	LowGQX	END=158063470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158063471	.	G	.	.	LowGQX	.	GT	./.
chr1	158063472	.	C	.	.	LowGQX	END=158063475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158063476	.	T	.	.	LowGQX	.	GT	./.
chr1	158063477	.	T	.	.	LowGQX	END=158063480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158063481	.	A	.	.	LowGQX	.	GT	./.
chr1	158063482	.	T	.	.	LowGQX	END=158063483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158063484	.	C	.	.	LowGQX	.	GT	./.
chr1	158063485	.	A	.	.	LowGQX	END=158063487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158063488	.	C	.	.	LowGQX	.	GT	./.
chr1	158063489	.	T	.	.	LowGQX	END=158063492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158063493	.	C	.	.	LowGQX	.	GT	./.
chr1	158063494	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158063495	.	G	.	.	LowGQX	.	GT	./.
chr1	158063496	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158063497	.	A	.	.	LowGQX	.	GT	./.
chr1	158063498	.	G	.	.	LowGQX	END=158063511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158063512	.	G	.	.	LowGQX	.	GT	./.
chr1	158063513	.	C	.	.	LowGQX	END=158063521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158063522	.	A	.	.	LowGQX	.	GT	./.
chr1	158063523	.	G	.	.	LowGQX	END=158063524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158063525	.	A	.	.	LowGQX	END=158063554	GT	./.
chr1	158064092	.	C	.	.	LowGQX	END=158064191	GT	./.
chr1	158064432	.	A	.	.	LowGQX	END=158064462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158064463	.	T	.	.	LowGQX	.	GT	./.
chr1	158064464	.	G	.	.	LowGQX	END=158064504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158064505	.	T	.	.	LowGQX	END=158064820	GT	./.
chr1	158064821	.	A	.	.	LowGQX	END=158064825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158064826	.	C	.	.	LowGQX	.	GT	./.
chr1	158064827	.	G	.	.	LowGQX	END=158064828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158064829	.	C	.	.	LowGQX	END=158064830	GT	./.
chr1	158064831	.	C	.	.	LowGQX	END=158064845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158064846	.	C	.	.	LowGQX	.	GT	./.
chr1	158064847	.	C	.	.	LowGQX	END=158064884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158064885	.	A	.	.	LowGQX	.	GT	./.
chr1	158064886	.	G	.	.	LowGQX	END=158064887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158064888	.	A	.	.	LowGQX	.	GT	./.
chr1	158064889	.	G	.	.	LowGQX	END=158064896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158064897	.	A	.	.	LowGQX	.	GT	./.
chr1	158064898	.	G	.	.	LowGQX	END=158064902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158064903	.	A	.	.	LowGQX	.	GT	./.
chr1	158064904	.	C	.	.	LowGQX	END=158064905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158064906	.	T	.	.	LowGQX	.	GT	./.
chr1	158064907	.	G	.	.	LowGQX	END=158064912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158066316	.	A	.	.	LowGQX	END=158066347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158066348	.	T	.	.	LowGQX	.	GT	./.
chr1	158066349	.	G	.	.	LowGQX	END=158066407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158066408	.	G	.	.	LowGQX	.	GT	./.
chr1	158066409	.	C	.	.	LowGQX	END=158066460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158066461	.	A	.	.	LowGQX	END=158066642	GT	./.
chr1	158066643	.	C	.	.	LowGQX	END=158066644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158066645	.	C	.	.	LowGQX	.	GT	./.
chr1	158066646	.	A	.	.	LowGQX	END=158066779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158066780	.	T	.	.	LowGQX	.	GT	./.
chr1	158066781	.	T	.	.	LowGQX	END=158066804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158066805	.	A	.	.	LowGQX	END=158066942	GT	./.
chr1	158150873	.	G	.	.	LowGQX	END=158150972	GT	./.
chr1	158151243	.	A	.	.	LowGQX	.	GT	./.
chr1	158151244	.	G	.	.	LowGQX	END=158151245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158151246	.	C	.	.	LowGQX	.	GT	./.
chr1	158151247	.	C	.	.	LowGQX	END=158151252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158151253	.	A	.	.	LowGQX	.	GT	./.
chr1	158151254	.	G	.	.	LowGQX	END=158151265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158151266	.	T	.	.	LowGQX	.	GT	./.
chr1	158151267	.	C	.	.	LowGQX	END=158151300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158151301	.	A	.	.	LowGQX	.	GT	./.
chr1	158151302	.	G	.	.	LowGQX	END=158151327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158151328	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158151329	.	G	.	.	LowGQX	END=158151404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158151405	.	C	.	.	LowGQX	END=158151513	GT	./.
chr1	158151820	.	A	.	.	LowGQX	END=158152228	GT	./.
chr1	158152666	.	A	.	.	PASS	END=158152688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	158152689	.	C	.	.	PASS	END=158152810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	158152811	.	G	.	.	PASS	END=158152825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	158152826	.	A	.	.	PASS	END=158152851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	158152852	.	A	.	.	PASS	END=158152894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	158152895	.	T	.	.	PASS	END=158152922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	158152923	.	G	.	.	PASS	END=158152947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	158152948	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:84:60
chr1	158153724	.	A	.	.	LowGQX	END=158153729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158153730	.	G	.	.	LowGQX	.	GT	./.
chr1	158153731	.	A	.	.	LowGQX	END=158153738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158153739	.	C	.	.	LowGQX	.	GT	./.
chr1	158153740	.	T	.	.	LowGQX	END=158153827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158153880	.	C	.	.	LowGQX	END=158153979	GT	./.
chr1	158224439	.	G	.	.	PASS	END=158224522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	158224523	.	A	.	.	PASS	END=158224538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	158224872	.	A	.	.	PASS	END=158224891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	158224892	.	C	.	.	PASS	END=158225142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	158225792	.	A	.	.	PASS	END=158225820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	158225821	.	G	.	.	PASS	END=158225934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	158225935	.	A	.	.	PASS	END=158226046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	158226047	.	A	.	.	PASS	END=158226074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	158226574	.	A	.	.	PASS	END=158226608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	158226609	.	G	.	.	PASS	END=158226733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	158226734	.	A	.	.	PASS	END=158226753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	158226754	.	T	.	.	PASS	END=158226773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	158226774	.	T	.	.	PASS	END=158226807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	158226808	.	G	.	.	PASS	END=158226830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	158226831	.	G	.	.	PASS	END=158226844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	158226845	.	C	.	.	PASS	END=158226850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	158226851	.	T	.	.	PASS	END=158226855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	158226856	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:45:60
chr1	158227207	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:71:60
chr1	158227208	.	C	.	.	PASS	END=158227214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	158227215	.	T	.	.	PASS	END=158227243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	158227244	.	C	.	.	PASS	END=158227306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	158227426	.	A	.	.	PASS	END=158227525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	158259836	.	A	.	.	LowGQX	END=158259935	GT	./.
chr1	158260922	.	A	.	.	LowGQX	END=158261192	GT	./.
chr1	158261872	.	A	.	.	LowGQX	END=158261922	GT	./.
chr1	158261923	.	G	.	.	LowGQX	END=158262041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158262042	.	T	.	.	LowGQX	END=158262157	GT	./.
chr1	158262384	.	A	.	.	LowGQX	END=158262666	GT	./.
chr1	158262998	.	G	.	.	LowGQX	END=158263097	GT	./.
chr1	158263243	.	A	.	.	LowGQX	END=158263396	GT	./.
chr1	158297987	.	G	.	.	LowGQX	END=158298012	GT	./.
chr1	158298013	.	A	.	.	LowGQX	END=158298050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298051	.	T	.	.	LowGQX	.	GT	./.
chr1	158298052	.	T	.	.	LowGQX	END=158298068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298069	.	A	.	.	LowGQX	.	GT	./.
chr1	158298070	.	A	.	.	LowGQX	END=158298086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298708	.	C	.	.	LowGQX	END=158298709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298710	.	C	.	.	LowGQX	.	GT	./.
chr1	158298711	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298712	.	G	.	.	LowGQX	.	GT	./.
chr1	158298713	.	G	.	.	LowGQX	END=158298716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298717	.	C	.	.	LowGQX	.	GT	./.
chr1	158298718	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298719	.	C	.	.	LowGQX	.	GT	./.
chr1	158298720	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298721	.	T	.	.	LowGQX	.	GT	./.
chr1	158298722	.	A	.	.	LowGQX	END=158298731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298732	.	G	.	.	LowGQX	.	GT	./.
chr1	158298733	.	C	.	.	LowGQX	END=158298736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298737	.	G	.	.	LowGQX	.	GT	./.
chr1	158298738	.	C	.	.	LowGQX	END=158298739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298740	.	T	.	.	LowGQX	.	GT	./.
chr1	158298741	.	A	.	.	LowGQX	END=158298746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298747	.	A	.	.	LowGQX	.	GT	./.
chr1	158298748	.	G	.	.	LowGQX	END=158298749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298750	.	A	.	.	LowGQX	.	GT	./.
chr1	158298751	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298752	.	C	.	.	LowGQX	.	GT	./.
chr1	158298753	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298754	.	A	.	.	LowGQX	.	GT	./.
chr1	158298755	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298756	.	G	.	.	LowGQX	.	GT	./.
chr1	158298757	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298758	.	A	.	.	LowGQX	.	GT	./.
chr1	158298759	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298760	.	G	.	.	LowGQX	END=158298761	GT	./.
chr1	158298762	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298763	.	C	.	.	LowGQX	.	GT	./.
chr1	158298764	.	T	.	.	LowGQX	END=158298767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298768	.	A	.	.	LowGQX	.	GT	./.
chr1	158298769	.	T	.	.	LowGQX	END=158298770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298771	.	G	.	.	LowGQX	.	GT	./.
chr1	158298772	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298773	.	C	.	.	LowGQX	.	GT	./.
chr1	158298774	.	A	.	.	LowGQX	END=158298775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298776	.	A	.	.	LowGQX	.	GT	./.
chr1	158298777	.	A	.	.	LowGQX	END=158298778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298779	.	A	.	.	LowGQX	.	GT	./.
chr1	158298780	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298781	.	T	.	.	LowGQX	END=158298782	GT	./.
chr1	158298783	.	G	.	.	LowGQX	END=158298790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298791	.	G	.	.	LowGQX	.	GT	./.
chr1	158298792	.	G	.	.	LowGQX	END=158298798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158298799	.	G	.	.	LowGQX	.	GT	./.
chr1	158298800	.	G	.	.	LowGQX	END=158298807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158299158	.	A	.	.	PASS	END=158299169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:81:60
chr1	158299170	.	G	.	.	PASS	END=158299186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	158299187	.	C	.	.	PASS	END=158299211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	158299212	.	G	.	.	PASS	END=158299251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	158299252	.	G	.	.	PASS	END=158299260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	158299261	.	T	.	.	PASS	END=158299290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	158299291	.	T	.	.	PASS	END=158299405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	158299406	.	T	.	.	PASS	END=158299440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	158299640	.	A	.	.	PASS	END=158299645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	158299646	.	T	.	.	PASS	END=158299662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	158299663	.	T	.	.	PASS	END=158299676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	158299677	.	A	.	.	PASS	END=158299689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	158299690	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	158299691	.	T	.	.	PASS	END=158299694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	158299695	.	G	.	.	LowGQX	END=158299696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	158299697	.	G	.	.	PASS	END=158299699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	158299700	.	G	.	.	LowGQX	END=158299701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	158299702	.	T	.	48.05	LowGQX	DP=11;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:11:18.06:60:18
chr1	158299703	.	T	.	.	LowGQX	END=158299704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	158299705	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	158299706	.	A	.	.	LowGQX	END=158299708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	158299709	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	158299710	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	158299711	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	158299712	.	G	.	.	LowGQX	END=158299713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	158299714	.	G	.	.	PASS	END=158299715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	158299716	.	A	.	.	LowGQX	END=158299724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	158299725	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	158299726	.	T	.	.	LowGQX	END=158299727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	158299728	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	158299729	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	158299730	.	C	.	.	PASS	END=158299731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	158299732	.	T	.	.	LowGQX	END=158299733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	158299734	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	158299735	.	T	.	.	LowGQX	END=158299745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	158299746	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	158299747	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr1	158299748	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	158299749	.	A	.	.	LowGQX	END=158299751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	158299752	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	158299753	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	158299754	.	T	.	.	LowGQX	END=158299756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	158299757	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	158299758	.	G	.	.	LowGQX	END=158299759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	158299760	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	158299761	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	158299762	.	A	.	.	LowGQX	END=158299763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:0:60
chr1	158299764	.	A	.	.	LowGQX	END=158299765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	158299766	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:12:60
chr1	158299767	.	T	.	.	PASS	END=158299769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	158299770	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	158299771	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	158299772	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	158299773	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:1:60
chr1	158299774	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	158299775	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	158299776	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	158299777	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	158299778	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	158299779	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	158299780	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	158299781	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	158299782	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	158299783	.	C	.	.	LowGQX	END=158299785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	158299786	.	C	.	.	PASS	END=158299788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	158299789	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	158299790	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	158299791	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:1:60
chr1	158299792	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr1	158299793	.	G	.	.	PASS	END=158299794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	158299795	.	A	.	.	LowGQX	END=158299801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	158299802	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	158299803	.	C	.	.	LowGQX	END=158299805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	158299806	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	158299807	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	158299808	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	158299809	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr1	158299810	.	C	.	.	LowGQX	END=158299811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	158299812	.	T	.	.	LowGQX	END=158299816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	158299817	.	G	.	.	LowGQX	END=158299822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	158299823	.	C	.	.	LowGQX	END=158299827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	158299828	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	158299829	.	A	.	.	LowGQX	END=158299833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	158299834	.	A	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	158299835	.	T	.	.	LowGQX	END=158299846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	158299847	.	T	.	.	LowGQX	END=158299854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	158299855	.	G	.	.	LowGQX	END=158299877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158299878	.	G	.	.	LowGQX	.	GT	./.
chr1	158299879	.	A	.	.	LowGQX	END=158299880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158299881	.	T	.	.	LowGQX	.	GT	./.
chr1	158299882	.	G	.	.	LowGQX	END=158299883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158299884	.	A	.	.	LowGQX	END=158299917	GT	./.
chr1	158299918	.	G	.	.	LowGQX	END=158299922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158300329	.	T	.	.	LowGQX	END=158300441	GT	./.
chr1	158300442	.	G	.	.	LowGQX	END=158300561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158300562	.	C	.	.	LowGQX	.	GT	./.
chr1	158300563	.	C	.	.	LowGQX	END=158300592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158300593	.	C	.	.	LowGQX	END=158300610	GT	./.
chr1	158300611	.	G	.	.	LowGQX	END=158300743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158300744	.	C	.	.	LowGQX	END=158300766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	158300767	.	C	.	.	LowGQX	END=158300823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158300824	.	A	.	.	LowGQX	END=158300835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	158300836	.	G	.	.	LowGQX	END=158300837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158300838	.	T	.	.	LowGQX	.	GT	./.
chr1	158300839	.	C	.	.	LowGQX	END=158300854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	158301134	.	C	.	.	LowGQX	END=158301233	GT	./.
chr1	158323241	.	C	.	.	LowGQX	END=158323296	GT	./.
chr1	158323297	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158323298	.	A	.	.	LowGQX	.	GT	./.
chr1	158323299	.	G	.	.	LowGQX	END=158323302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158323303	.	A	.	.	LowGQX	.	GT	./.
chr1	158323304	.	G	.	.	LowGQX	END=158323309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158323310	.	C	.	.	LowGQX	.	GT	./.
chr1	158323311	.	A	.	.	LowGQX	END=158323312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158323313	.	A	.	.	LowGQX	.	GT	./.
chr1	158323314	.	G	.	.	LowGQX	END=158323317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158323318	.	T	.	.	LowGQX	.	GT	./.
chr1	158323319	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158323320	.	G	.	.	LowGQX	END=158323321	GT	./.
chr1	158323322	.	A	.	.	LowGQX	END=158323329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158323330	.	A	.	.	LowGQX	END=158323331	GT	./.
chr1	158323332	.	T	.	.	LowGQX	END=158323339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158323340	.	A	.	.	LowGQX	.	GT	./.
chr1	158323758	.	C	.	.	PASS	END=158323789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	158323790	.	G	.	.	PASS	END=158323854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	158323855	.	G	.	.	PASS	END=158323857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	158324165	.	A	.	.	PASS	END=158324179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	158324180	.	A	.	.	PASS	END=158324263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr1	158324264	.	C	.	.	PASS	END=158324439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:304:99:60
chr1	158324440	.	C	.	.	PASS	END=158324465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:60
chr1	158325088	.	A	.	.	PASS	END=158325105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	158325106	.	G	.	.	PASS	END=158325234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	158325235	.	C	.	.	PASS	END=158325242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	158325243	.	A	.	.	PASS	END=158325361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	158325615	.	A	.	.	PASS	END=158325649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	158325650	.	G	.	.	PASS	END=158325744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	158325745	.	C	.	.	PASS	END=158325777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	158325778	.	G	.	.	PASS	END=158325795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	158325796	.	C	.	.	PASS	END=158325805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	158325806	.	C	.	.	PASS	END=158325814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	158325815	.	T	.	.	PASS	END=158325838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	158325839	.	T	.	.	PASS	END=158325861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	158325862	.	A	.	.	PASS	END=158325871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	158325872	.	G	.	.	PASS	END=158325887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	158325888	.	C	.	.	PASS	END=158325892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	158325893	.	G	.	.	PASS	END=158325896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	158325897	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:42:60
chr1	158325898	.	G	.	.	PASS	END=158325902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	158325903	.	A	.	.	PASS	END=158325929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	158325930	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:48:60
chr1	158325931	.	A	.	.	PASS	END=158325938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	158325939	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	158325940	.	C	.	.	PASS	END=158325955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	158325956	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:42:60
chr1	158325957	.	G	.	.	PASS	END=158325983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	158325984	.	A	.	.	PASS	END=158326007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	158326008	.	A	.	.	PASS	END=158326020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	158326285	.	C	.	.	PASS	END=158326317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	158326318	.	G	.	.	PASS	END=158326384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	158326516	.	A	.	.	PASS	END=158326542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	158326543	.	C	.	.	PASS	END=158326634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	158326635	.	C	.	.	PASS	END=158326662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	158326663	.	A	G	2254.94	PASS	BaseQRankSum=2.587;DP=200;Dels=0.00;FS=1.961;HRun=1;HaplotypeScore=16.2535;MQ=60;MQ0=0;MQRankSum=-1.281;QD=11.27;ReadPosRankSum=-0.705;SB=-923.19	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:107,93:200:99:2285,0,2640:60:99:0.465
chr1	158326664	.	C	T	2180.18	PASS	BaseQRankSum=2.939;DP=199;Dels=0.00;FS=2.815;HRun=0;HaplotypeScore=16.2535;MQ=60;MQ0=0;MQRankSum=0.223;QD=10.96;ReadPosRankSum=-0.702;SB=-940.53	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:107,92:199:99:2210,0,2706:60:99:0.462
chr1	158326665	.	A	.	.	PASS	END=158326688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	158368310	.	T	.	.	LowGQX	END=158368411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158368412	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	158368413	.	T	.	.	LowGQX	END=158368429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158368430	.	A	.	.	LowGQX	END=158369258	GT	./.
chr1	158389716	.	T	.	.	LowGQX	END=158390332	GT	./.
chr1	158390333	.	G	.	.	LowGQX	END=158390411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158390412	.	A	T	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	158390413	.	G	.	.	LowGQX	END=158390518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158390519	.	A	.	.	LowGQX	.	GT	./.
chr1	158390520	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158390521	.	T	.	.	LowGQX	.	GT	./.
chr1	158390522	.	G	.	.	LowGQX	END=158390525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158390526	.	A	.	.	LowGQX	.	GT	./.
chr1	158390527	.	T	.	.	LowGQX	END=158390538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158390539	.	C	.	.	LowGQX	.	GT	./.
chr1	158390540	.	C	.	.	LowGQX	END=158390547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158390548	.	A	.	.	LowGQX	END=158390549	GT	./.
chr1	158390550	.	A	.	.	LowGQX	END=158390553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158390554	.	A	.	.	LowGQX	.	GT	./.
chr1	158390555	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158390556	.	A	.	.	LowGQX	.	GT	./.
chr1	158390557	.	G	.	.	LowGQX	END=158390561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158390562	.	A	.	.	LowGQX	.	GT	./.
chr1	158390563	.	G	.	.	LowGQX	END=158390564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158390565	.	A	.	.	LowGQX	.	GT	./.
chr1	158390566	.	A	.	.	LowGQX	END=158390571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158390572	.	C	.	.	LowGQX	.	GT	./.
chr1	158390573	.	A	.	.	LowGQX	END=158390574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158390575	.	A	.	.	LowGQX	.	GT	./.
chr1	158390576	.	G	.	.	LowGQX	END=158390579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158390580	.	A	.	.	LowGQX	.	GT	./.
chr1	158390581	.	G	.	.	LowGQX	END=158390610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158390611	.	C	.	.	LowGQX	.	GT	./.
chr1	158390612	.	G	.	.	LowGQX	END=158390629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158390630	.	C	.	.	LowGQX	END=158390631	GT	./.
chr1	158390632	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158390633	.	C	.	.	LowGQX	.	GT	./.
chr1	158390634	.	A	.	.	LowGQX	END=158390645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158390646	.	A	.	.	LowGQX	END=158390647	GT	./.
chr1	158390648	.	C	.	.	LowGQX	END=158390649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158390650	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	158390651	.	C	.	.	LowGQX	END=158390658	GT	./.
chr1	158435350	.	C	.	.	LowGQX	END=158435839	GT	./.
chr1	158435840	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158435841	.	T	.	.	LowGQX	END=158435842	GT	./.
chr1	158435843	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158435844	.	C	.	.	LowGQX	.	GT	./.
chr1	158435845	.	A	.	.	LowGQX	END=158435846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158435847	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158435848	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158435849	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158435850	.	C	.	.	LowGQX	END=158435854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158435855	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158435856	.	C	.	.	LowGQX	END=158435860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158435861	.	C	.	.	LowGQX	.	GT	./.
chr1	158435862	.	T	.	.	LowGQX	END=158435863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158435864	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158435865	.	A	.	.	LowGQX	END=158435869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158435870	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158435871	.	C	.	.	LowGQX	END=158435873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158435874	.	C	.	32.03	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:2.50:60:3
chr1	158435875	.	A	.	.	LowGQX	END=158435884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158435885	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158435886	.	T	.	.	LowGQX	END=158435888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158435889	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158435890	.	A	.	.	LowGQX	END=158435913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158435914	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158435915	.	A	.	.	LowGQX	.	GT	./.
chr1	158435916	.	T	.	.	LowGQX	END=158435918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158435919	.	C	.	.	LowGQX	.	GT	./.
chr1	158435920	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158435921	.	G	.	.	LowGQX	.	GT	./.
chr1	158435922	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158435923	.	A	.	.	LowGQX	END=158435925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158435926	.	C	.	.	LowGQX	.	GT	./.
chr1	158435927	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158435928	.	G	.	.	LowGQX	END=158435942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158435943	.	G	.	.	LowGQX	.	GT	./.
chr1	158435944	.	T	.	.	LowGQX	END=158435959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158435960	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	158435961	.	G	.	.	LowGQX	END=158435972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	158435973	.	G	.	.	LowGQX	.	GT	./.
chr1	158435974	.	T	.	.	LowGQX	END=158435987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	158435988	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	158435989	.	T	.	.	LowGQX	END=158435998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158435999	.	C	.	.	LowGQX	.	GT	./.
chr1	158436000	.	T	.	.	LowGQX	END=158436014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158436015	.	A	.	.	LowGQX	.	GT	./.
chr1	158436016	.	T	.	.	LowGQX	END=158436019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158436020	.	T	.	.	LowGQX	.	GT	./.
chr1	158436021	.	G	.	.	LowGQX	END=158436028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158436029	.	A	.	.	LowGQX	.	GT	./.
chr1	158436030	.	A	.	.	LowGQX	END=158436051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158436052	.	G	.	.	LowGQX	.	GT	./.
chr1	158436053	.	A	.	.	LowGQX	END=158436100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158436101	.	T	.	.	LowGQX	END=158436102	GT	./.
chr1	158436103	.	A	.	.	LowGQX	END=158436105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158436106	.	A	.	.	LowGQX	.	GT	./.
chr1	158436107	.	C	.	.	LowGQX	END=158436117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158436118	.	C	.	.	LowGQX	.	GT	./.
chr1	158436119	.	T	.	.	LowGQX	END=158436122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158436123	.	A	.	.	LowGQX	.	GT	./.
chr1	158436124	.	T	.	.	LowGQX	END=158436127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158436128	.	C	.	.	LowGQX	.	GT	./.
chr1	158436129	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158436130	.	T	.	.	LowGQX	.	GT	./.
chr1	158436131	.	A	.	.	LowGQX	END=158436133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158436134	.	G	.	.	LowGQX	.	GT	./.
chr1	158436135	.	C	.	.	LowGQX	END=158436139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158436140	.	G	.	.	LowGQX	.	GT	./.
chr1	158436141	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158436142	.	C	.	.	LowGQX	.	GT	./.
chr1	158436143	.	T	.	.	LowGQX	END=158436158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158436159	.	C	.	.	LowGQX	.	GT	./.
chr1	158436160	.	A	.	.	LowGQX	END=158436161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158436162	.	G	.	.	LowGQX	.	GT	./.
chr1	158436163	.	A	.	.	LowGQX	END=158436164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158436165	.	A	.	.	LowGQX	.	GT	./.
chr1	158436166	.	C	.	.	LowGQX	END=158436179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158436180	.	T	.	.	LowGQX	.	GT	./.
chr1	158436181	.	C	.	.	LowGQX	END=158436193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158436194	.	T	.	.	LowGQX	.	GT	./.
chr1	158436195	.	A	.	.	LowGQX	END=158436216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158436217	.	T	.	.	LowGQX	END=158436297	GT	./.
chr1	158449666	.	G	.	.	LowGQX	END=158450677	GT	./.
chr1	158507135	.	T	.	.	LowGQX	END=158507183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158507184	.	A	G	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	158507185	.	T	.	.	LowGQX	END=158507199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158507200	.	C	.	.	LowGQX	.	GT	./.
chr1	158507201	.	T	.	.	LowGQX	END=158507219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158507220	.	A	.	.	LowGQX	.	GT	./.
chr1	158507221	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158507222	.	G	.	.	LowGQX	END=158507223	GT	./.
chr1	158507224	.	A	.	.	LowGQX	END=158507234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158516916	.	T	.	.	LowGQX	END=158517020	GT	./.
chr1	158517021	.	G	.	.	LowGQX	END=158517195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158517196	.	G	.	.	LowGQX	END=158517707	GT	./.
chr1	158517708	.	G	.	.	LowGQX	END=158517746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158517747	.	A	.	.	LowGQX	.	GT	./.
chr1	158517748	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158517749	.	A	.	.	LowGQX	.	GT	./.
chr1	158517750	.	A	.	.	LowGQX	END=158517787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158517788	.	G	.	.	LowGQX	.	GT	./.
chr1	158517789	.	A	.	.	LowGQX	END=158517866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158517867	.	T	.	.	LowGQX	.	GT	./.
chr1	158517868	.	T	.	.	LowGQX	END=158517869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158517870	.	T	.	.	LowGQX	.	GT	./.
chr1	158517871	.	C	.	.	LowGQX	END=158517897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158532430	.	C	.	.	LowGQX	.	GT	./.
chr1	158532431	.	C	.	.	LowGQX	END=158532435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158532436	.	G	.	.	LowGQX	.	GT	./.
chr1	158532437	.	T	.	.	LowGQX	END=158532446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158532447	.	C	.	.	LowGQX	.	GT	./.
chr1	158532448	.	T	.	.	LowGQX	END=158532451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158532452	.	C	.	.	LowGQX	.	GT	./.
chr1	158532453	.	A	.	.	LowGQX	END=158532484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158532485	.	T	.	.	LowGQX	.	GT	./.
chr1	158532486	.	C	.	.	LowGQX	END=158532497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158532498	.	C	.	.	LowGQX	.	GT	./.
chr1	158532499	.	T	.	.	LowGQX	END=158532559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158532560	.	T	.	.	LowGQX	END=158533394	GT	./.
chr1	158548707	.	G	.	.	LowGQX	END=158548942	GT	./.
chr1	158548943	.	G	.	.	LowGQX	END=158549004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158549005	.	G	T	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	158549006	.	C	.	.	LowGQX	END=158549156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158549157	.	A	.	.	LowGQX	END=158549691	GT	./.
chr1	158565261	.	A	.	.	LowGQX	END=158565360	GT	./.
chr1	158576227	.	G	.	.	LowGQX	END=158576231	GT	./.
chr1	158576232	.	G	.	.	LowGQX	END=158576257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158576258	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158576259	.	G	.	.	LowGQX	END=158576288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158576289	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	158576290	.	G	.	.	LowGQX	END=158576406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158576407	.	A	.	.	LowGQX	END=158576902	GT	./.
chr1	158576903	.	A	.	.	LowGQX	END=158576977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158576978	.	T	.	.	LowGQX	END=158577172	GT	./.
chr1	158581003	.	G	.	.	PASS	END=158581035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	158581036	.	T	.	.	PASS	END=158581205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	158581206	.	C	.	.	PASS	END=158581230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	158582556	.	A	.	.	PASS	END=158582563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	158582564	.	A	.	.	PASS	END=158582570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	158582571	.	A	.	.	PASS	END=158582575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	158582576	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:57:60
chr1	158582577	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:21:60
chr1	158582578	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:69:60
chr1	158582579	.	G	.	.	PASS	END=158582598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	158582599	.	A	.	.	PASS	END=158582628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	158582629	.	A	.	.	PASS	END=158582671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	158582672	.	T	.	.	PASS	END=158582727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	158582728	.	T	.	.	PASS	END=158582738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	158582739	.	G	.	.	PASS	END=158582773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	158582774	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:72:60
chr1	158582775	.	C	.	.	PASS	END=158582781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	158582782	.	T	.	.	PASS	END=158582785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	158582786	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:66:60
chr1	158582787	.	A	.	.	PASS	END=158582802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	158583460	.	C	.	.	PASS	END=158583471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	158583472	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:60:60
chr1	158583473	.	C	.	.	PASS	END=158583474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	158583475	.	T	.	.	PASS	END=158583502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	158583503	.	G	.	.	PASS	END=158583593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	158583594	.	T	.	.	PASS	END=158583627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	158583628	.	A	.	.	PASS	END=158583663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	158583664	.	G	.	.	PASS	END=158583684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	158583685	.	T	.	.	PASS	END=158583692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	158583693	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:36:21:60
chr1	158583694	.	T	.	.	PASS	END=158583708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	158583992	.	T	.	.	PASS	END=158584021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:98:60
chr1	158584022	.	T	.	.	PASS	END=158584041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	158584042	.	C	.	.	PASS	END=158584102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	158584103	.	G	.	210.54	PASS	DP=112;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:89:109:99:60:99
chr1	158584104	.	A	.	.	PASS	END=158584147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	158584955	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:15:60
chr1	158584956	.	A	.	.	PASS	END=158584957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	158584958	.	C	.	.	PASS	END=158584962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	158584963	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:45:60
chr1	158584964	.	C	.	.	PASS	END=158584965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	158584966	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:39:60
chr1	158584967	.	C	.	.	PASS	END=158584971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	158584972	.	A	.	.	PASS	END=158584973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	158584974	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:33:60
chr1	158584975	.	C	.	.	PASS	END=158584976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	158584977	.	T	.	.	PASS	END=158584986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:96:60
chr1	158584987	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:72:60
chr1	158584988	.	G	.	.	PASS	END=158584998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	158584999	.	T	.	.	PASS	END=158585028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	158585029	.	G	.	.	PASS	END=158585054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	158585055	.	G	.	.	PASS	END=158585074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	158585075	.	T	.	.	PASS	END=158585189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	158585190	.	T	.	.	PASS	END=158585221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	158585222	.	T	.	.	PASS	END=158585244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	158587276	.	A	.	.	PASS	END=158587342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:88:60
chr1	158587343	.	T	.	.	PASS	END=158587396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	158587397	.	A	.	.	PASS	END=158587399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	158587400	.	T	G	835.58	PASS	BaseQRankSum=1.393;DP=58;Dels=0.00;FS=2.879;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-0.241;QD=14.41;ReadPosRankSum=1.719;SB=-157.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,30:58:99:866,0,773:60:99:0.517
chr1	158587401	.	C	.	.	PASS	END=158587429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	158587778	.	C	.	.	PASS	END=158587783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	158587784	.	T	G	1884.16	PASS	DP=59;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;QD=31.93;SB=-743.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,58:59:99:1917,153,0:60:99:1.000
chr1	158587785	.	A	.	.	PASS	END=158587873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr1	158587874	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:73:60
chr1	158587875	.	A	.	.	PASS	END=158587891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	158587892	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:75:60
chr1	158587893	.	A	.	.	PASS	END=158587897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	158588961	.	G	.	.	PASS	END=158588983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	158588984	.	T	.	.	PASS	END=158588985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:57:60
chr1	158588986	.	A	.	.	PASS	END=158588995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	158588996	.	A	.	.	PASS	END=158589000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	158589001	.	G	.	.	PASS	END=158589037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	158589038	.	G	.	.	PASS	END=158589153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	158589154	.	T	.	.	PASS	END=158589175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	158589909	.	G	.	.	PASS	END=158589918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	158589919	.	T	.	.	PASS	END=158589935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	158589936	.	A	.	.	PASS	END=158589948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	158589949	.	T	.	.	PASS	END=158589958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	158589959	.	C	.	.	PASS	END=158589981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	158589982	.	T	.	.	PASS	END=158589990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	158589991	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:57:60
chr1	158589992	.	T	.	.	PASS	END=158590011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	158590012	.	A	.	.	PASS	END=158590023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	158590024	.	G	.	.	PASS	END=158590038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	158590039	.	C	.	.	PASS	END=158590162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	158590163	.	A	.	.	PASS	END=158590172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	158590173	.	C	.	.	PASS	END=158590189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	158590190	.	C	.	.	PASS	END=158590223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	158590224	.	C	.	.	PASS	END=158590227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	158590228	.	T	.	.	PASS	END=158590231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:74:60
chr1	158590232	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:48:60
chr1	158590233	.	A	.	.	PASS	END=158590244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	158590245	.	C	.	.	PASS	END=158590256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	158590257	.	C	.	.	PASS	END=158590265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	158590266	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:45:60
chr1	158590267	.	A	.	.	PASS	END=158590307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	158592722	.	G	.	.	LowGQX	END=158592725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	158592726	.	A	.	.	PASS	END=158592733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	158592734	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	158592735	.	T	.	.	PASS	END=158592736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	158592737	.	A	.	.	PASS	END=158592746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	158592747	.	G	.	.	PASS	END=158592775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	158592776	.	C	.	.	PASS	END=158592780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	158592781	.	G	A	338.15	PASS	BaseQRankSum=2.141;DP=30;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.395;QD=11.27;ReadPosRankSum=-0.603;SB=-99.90	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:16,14:30:99:368,0,433:60:99:0.467
chr1	158592782	.	A	.	.	PASS	END=158592827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	158592828	.	T	.	.	PASS	END=158592832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	158592833	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr1	158592834	.	A	.	.	PASS	END=158592841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	158592842	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:70:60
chr1	158592843	.	C	.	.	PASS	END=158592846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	158592847	.	G	A	365.61	PASS	BaseQRankSum=3.247;DP=54;Dels=0.00;FS=1.145;HRun=0;HaplotypeScore=2.9462;MQ=60;MQ0=0;MQRankSum=-1.490;QD=6.77;ReadPosRankSum=1.455;SB=-290.64	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,21:54:99:396,0,889:60:99:0.389
chr1	158592848	.	C	.	.	PASS	END=158592860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	158592861	.	G	.	.	PASS	END=158592890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	158592891	.	T	.	.	PASS	END=158592900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	158592901	.	C	G	667.93	PASS	BaseQRankSum=0.487;DP=109;Dels=0.00;FS=0.821;HRun=1;HaplotypeScore=5.7240;MQ=60;MQ0=0;MQRankSum=0.311;QD=6.13;ReadPosRankSum=-1.861;SB=-392.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:75,34:109:99:698,0,1952:60:99:0.312
chr1	158592902	.	A	.	.	PASS	END=158592934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	158592935	.	G	A	602.38	PASS	BaseQRankSum=2.259;DP=108;Dels=0.00;FS=1.784;HRun=0;HaplotypeScore=15.1507;MQ=60;MQ0=0;MQRankSum=0.950;QD=5.58;ReadPosRankSum=-0.198;SB=-385.98	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:73,32:108:99:632,0,1796:60:99:0.305
chr1	158592936	.	G	.	.	PASS	END=158592988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	158592989	.	A	.	.	PASS	END=158593005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	158593006	.	C	.	.	PASS	END=158593022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	158593023	.	T	.	.	PASS	END=158593030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	158593031	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:54:60
chr1	158593032	.	C	.	.	PASS	END=158593033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	158595885	.	A	.	.	PASS	END=158595891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	158595892	.	G	.	.	PASS	END=158595913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	158595914	.	A	.	.	PASS	END=158595934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	158595935	.	C	.	.	PASS	END=158595945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	158595946	.	A	.	.	PASS	END=158595967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	158595968	.	G	.	.	PASS	END=158596063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	158596578	.	A	.	.	PASS	END=158596596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	158596597	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:38:60
chr1	158596598	.	C	.	.	PASS	END=158596606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	158596607	.	C	.	.	PASS	END=158596622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	158596623	.	T	.	.	PASS	END=158596637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	158596638	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr1	158596639	.	C	.	.	PASS	END=158596671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	158596672	.	A	.	.	PASS	END=158596706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	158596707	.	C	.	.	PASS	END=158596796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	158596797	.	C	.	.	PASS	END=158596840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:97:60
chr1	158596841	.	T	.	.	PASS	END=158596848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	158597364	.	A	.	.	PASS	END=158597378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	158597379	.	A	.	.	PASS	END=158597412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	158597413	.	A	.	.	PASS	END=158597414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	158597415	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:49:60
chr1	158597416	.	T	.	.	PASS	END=158597417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	158597418	.	A	.	.	PASS	END=158597434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	158597435	.	C	.	.	PASS	END=158597564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:98:60
chr1	158604282	.	A	.	.	PASS	END=158604305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	158604306	.	A	.	.	PASS	END=158604319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	158604320	.	T	.	.	PASS	END=158604325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	158604326	.	T	.	.	PASS	END=158604334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	158604335	.	G	.	.	PASS	END=158604351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr1	158604352	.	T	.	.	PASS	END=158604379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	158604380	.	C	.	.	PASS	END=158604390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	158604391	.	T	C	1198.57	PASS	BaseQRankSum=-0.094;DP=104;Dels=0.00;FS=2.617;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=0.263;QD=11.52;ReadPosRankSum=-0.856;SB=-763.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:54,50:104:99:1229,0,1371:60:99:0.481
chr1	158604392	.	T	.	.	PASS	END=158604485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	158604486	.	C	.	.	PASS	END=158604512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	158604513	.	G	.	.	PASS	END=158604516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	158605652	.	C	.	.	PASS	END=158605675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	158605676	.	G	.	.	PASS	END=158605678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	158605679	.	C	.	.	PASS	END=158605680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:70:60
chr1	158605681	.	G	.	.	PASS	END=158605699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	158605700	.	C	.	.	PASS	END=158605742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	158605743	.	C	.	.	PASS	END=158605824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	158605825	.	C	.	.	PASS	END=158605861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	158605862	.	A	.	.	PASS	END=158605875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:97:60
chr1	158606380	.	G	.	.	PASS	END=158606420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	158606421	.	C	.	.	PASS	END=158606448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:82:60
chr1	158606449	.	G	T	460.93	PASS	BaseQRankSum=0.070;DP=70;Dels=0.00;FS=1.008;HRun=0;HaplotypeScore=4.8918;MQ=60;MQ0=0;MQRankSum=-0.032;QD=6.58;ReadPosRankSum=0.630;SB=-276.85	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:46,23:70:99:491,0,1152:60:99:0.333
chr1	158606450	.	G	.	.	PASS	END=158606482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	158606483	.	T	.	.	PASS	END=158606535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	158606536	.	T	.	.	PASS	END=158606592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	158606593	.	T	.	.	PASS	END=158606602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	158607772	.	A	.	.	PASS	END=158607781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	158607782	.	C	.	.	PASS	END=158607787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	158607788	.	T	G	2660.80	PASS	BaseQRankSum=1.647;DP=81;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=0.920;QD=32.85;ReadPosRankSum=-1.091;SB=-365.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,80:81:99:2694,214,0:60:99:0.988
chr1	158607789	.	A	.	.	PASS	END=158607815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	158607816	.	C	.	.	PASS	END=158607839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	158607840	.	A	.	.	PASS	END=158607869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	158607870	.	G	.	.	PASS	END=158607904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	158607905	.	C	.	.	PASS	END=158607992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:258:99:60
chr1	158607993	.	C	.	.	PASS	END=158608019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	158608020	.	C	.	.	PASS	END=158608050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	158608051	.	T	.	.	PASS	END=158608066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	158608067	.	T	.	.	PASS	END=158608074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	158608075	.	T	.	.	PASS	END=158608082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	158609321	.	C	.	.	PASS	END=158609344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	158609345	.	G	.	.	PASS	END=158609365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	158609366	.	A	.	.	PASS	END=158609399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	158609400	.	A	.	.	PASS	END=158609447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	158609448	.	T	.	.	PASS	END=158609460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	158609461	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:78:75:60
chr1	158609462	.	C	.	.	PASS	END=158609514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	158609515	.	A	.	.	PASS	END=158609527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	158609609	.	G	.	.	PASS	END=158609624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	158609625	.	A	.	.	PASS	END=158609657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	158609658	.	A	.	.	PASS	END=158609668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	158609669	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:64:69:60
chr1	158609670	.	C	.	.	PASS	END=158609706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	158609707	.	G	.	.	PASS	END=158609783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	158609784	.	T	.	.	PASS	END=158609803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:84:60
chr1	158609804	.	C	.	.	PASS	END=158609825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	158609826	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:57:60
chr1	158609827	.	A	.	.	PASS	END=158609845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	158609846	.	C	.	.	PASS	END=158609848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	158612150	.	A	.	.	PASS	END=158612156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	158612157	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:33:60
chr1	158612158	.	T	.	.	PASS	END=158612165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	158612166	.	T	.	.	PASS	END=158612175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	158612176	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:69:60
chr1	158612177	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:30:60
chr1	158612178	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:27:60
chr1	158612179	.	C	.	.	PASS	END=158612194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	158612195	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:33:60
chr1	158612196	.	T	.	.	PASS	END=158612222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	158612223	.	T	.	.	PASS	END=158612235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	158612236	.	A	G	798.79	PASS	BaseQRankSum=-0.347;DP=40;Dels=0.00;FS=1.397;HRun=0;HaplotypeScore=0.9992;MQ=60;MQ0=0;MQRankSum=-0.664;QD=19.97;ReadPosRankSum=-1.964;SB=-330.87	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,27:40:99:829,0,363:60:99:0.675
chr1	158612237	.	C	.	.	PASS	END=158612250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	158612251	.	T	.	.	PASS	END=158612276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	158612277	.	T	.	.	PASS	END=158612383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	158612553	.	C	.	.	PASS	END=158612562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr1	158612563	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:60
chr1	158612564	.	G	.	.	PASS	END=158612602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	158612603	.	C	.	.	PASS	END=158612625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:93:60
chr1	158612626	.	T	.	.	PASS	END=158612667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	158612668	.	T	.	.	PASS	END=158612773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	158612774	.	A	.	.	PASS	END=158612799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:85:60
chr1	158612800	.	C	.	.	PASS	END=158612816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	158612817	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:78:60
chr1	158613061	.	T	.	.	PASS	END=158613068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	158613069	.	C	.	.	PASS	END=158613090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	158613091	.	A	.	.	PASS	END=158613103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	158613104	.	G	.	.	PASS	END=158613113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	158613114	.	G	.	.	PASS	END=158613133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	158613134	.	G	.	.	PASS	END=158613158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	158613159	.	G	.	.	PASS	END=158613266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	158613992	.	G	.	.	PASS	END=158614001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:81:60
chr1	158614002	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:69:60
chr1	158614003	.	T	.	.	PASS	END=158614067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr1	158614068	.	T	.	.	PASS	END=158614078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	158614079	.	C	.	.	PASS	END=158614162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	158614163	.	T	.	.	PASS	END=158614194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	158614195	.	A	.	.	PASS	END=158614197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	158614198	.	C	T	798.38	PASS	BaseQRankSum=1.951;DP=63;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-1.138;QD=12.67;ReadPosRankSum=1.386;SB=-127.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,29:63:99:828,0,930:60:99:0.460
chr1	158614199	.	A	.	.	PASS	END=158614218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	158614219	.	A	.	.	PASS	END=158614223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	158614224	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:30:60
chr1	158614225	.	T	.	.	PASS	END=158614229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	158614230	.	T	.	.	PASS	END=158614237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	158614927	.	T	.	.	PASS	END=158614947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	158614948	.	C	.	.	PASS	END=158614994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	158614995	.	G	.	.	PASS	END=158615090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	158615091	.	G	.	.	PASS	END=158615133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	158615134	.	C	.	.	PASS	END=158615145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	158615146	.	A	.	.	PASS	END=158615172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	158615173	.	C	.	.	PASS	END=158615213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	158615214	.	C	.	.	PASS	END=158615216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	158615217	.	T	C	1127.84	PASS	BaseQRankSum=-1.129;DP=96;Dels=0.00;FS=6.905;HRun=0;HaplotypeScore=4.8396;MQ=60;MQ0=0;MQRankSum=-0.577;QD=11.75;ReadPosRankSum=0.945;SB=-492.48	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:52,44:96:99:1158,0,1209:60:99:0.458
chr1	158615218	.	T	.	.	PASS	END=158615226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	158615234	.	A	.	.	PASS	END=158615324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	158615325	.	T	.	.	PASS	END=158615348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	158615349	.	A	.	.	PASS	END=158615368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	158615369	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:75:60
chr1	158615370	.	C	.	.	PASS	END=158615390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr1	158615391	.	A	.	.	PASS	END=158615435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	158617278	.	C	.	.	PASS	END=158617316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	158617317	.	A	.	.	PASS	END=158617343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	158617344	.	A	.	.	PASS	END=158617381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	158617382	.	A	.	.	PASS	END=158617435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	158617436	.	C	.	.	PASS	END=158617494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	158617495	.	C	.	.	PASS	END=158617516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	158617517	.	A	.	.	PASS	END=158617530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	158617531	.	T	.	.	PASS	END=158617547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	158617548	.	A	.	.	PASS	END=158617561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	158618248	.	G	.	.	PASS	END=158618283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:90:60
chr1	158618284	.	A	.	.	PASS	END=158618343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	158618344	.	T	.	.	PASS	END=158618369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	158618370	.	G	.	.	PASS	END=158618442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	158618443	.	T	.	.	PASS	END=158618464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	158618465	.	A	.	.	PASS	END=158618479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	158618480	.	A	T	857.53	PASS	BaseQRankSum=-1.168;DP=80;Dels=0.00;FS=2.088;HRun=1;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=-0.569;QD=10.72;ReadPosRankSum=0.820;SB=-353.86	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:37,43:80:99:888,0,902:60:99:0.538
chr1	158618481	.	T	.	.	PASS	END=158618494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:84:60
chr1	158619595	.	T	.	.	PASS	END=158619634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	158619635	.	A	.	.	PASS	END=158619656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	158619657	.	T	.	.	PASS	END=158619727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	158619728	.	A	C	5867.11	PASS	DP=194;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=10.4161;MQ=60;MQ0=0;QD=30.24;SB=-3422.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,194:194:99:5867,442,0:60:99:1.000
chr1	158619729	.	A	.	.	PASS	END=158619782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	158619783	.	C	.	.	PASS	END=158619788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	158621106	.	C	.	.	PASS	END=158621133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	158621134	.	G	.	.	PASS	END=158621183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	158621184	.	T	.	.	PASS	END=158621284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	158621285	.	G	.	.	PASS	END=158621309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	158622206	.	G	.	.	PASS	END=158622227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	158622228	.	A	.	.	PASS	END=158622283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	158622284	.	C	.	.	PASS	END=158622350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	158622351	.	A	.	.	PASS	END=158622371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	158622372	.	A	.	.	PASS	END=158622402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:91:60
chr1	158622403	.	G	.	.	PASS	END=158622405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	158622406	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:72:60
chr1	158622407	.	T	.	.	PASS	END=158622412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	158622413	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:57:60
chr1	158622414	.	T	.	.	PASS	END=158622423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	158622424	.	G	.	.	PASS	END=158622433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	158622434	.	G	.	.	PASS	END=158622437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	158622438	.	C	.	.	PASS	END=158622448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	158622449	.	T	.	.	PASS	END=158622450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	158622451	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	158622452	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr1	158622453	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	158622454	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	158622455	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	158622456	.	T	.	.	PASS	END=158622458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	158622459	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	158622460	.	G	.	.	PASS	END=158622479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	158622480	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:2:60
chr1	158622481	.	A	.	.	PASS	END=158622483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	158622484	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	158622485	.	A	.	.	PASS	END=158622494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	158623013	.	C	.	.	PASS	END=158623025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	158623026	.	A	.	.	PASS	END=158623040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	158623041	.	G	.	.	PASS	END=158623087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	158623088	.	T	.	.	PASS	END=158623154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	158623155	.	T	.	.	PASS	END=158623233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	158623234	.	C	.	.	PASS	END=158623266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	158624350	.	A	.	.	PASS	END=158624364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	158624365	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:84:60
chr1	158624366	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:36:60
chr1	158624367	.	A	.	.	PASS	END=158624411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	158624412	.	A	.	.	PASS	END=158624433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	158624434	.	A	.	.	PASS	END=158624466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	158624467	.	G	.	.	PASS	END=158624507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	158624508	.	C	.	.	PASS	END=158624562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	158624563	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:78:60
chr1	158624564	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:41:12:60
chr1	158624565	.	A	.	.	PASS	END=158624571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	158624572	.	C	.	.	PASS	END=158624589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	158626303	.	T	.	.	PASS	END=158626317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	158626318	.	G	.	.	PASS	END=158626340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	158626341	.	A	.	.	PASS	END=158626392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	158626393	.	G	.	.	PASS	END=158626443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	158626444	.	A	.	.	PASS	END=158626485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	158626486	.	A	.	.	PASS	END=158626493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	158626494	.	T	.	.	PASS	END=158626497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	158627216	.	T	.	.	PASS	END=158627220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	158627221	.	T	.	.	PASS	END=158627222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	158627223	.	G	.	.	PASS	END=158627242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:59
chr1	158627243	.	A	.	.	PASS	END=158627248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:59
chr1	158627249	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:36:59
chr1	158627250	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:21:59
chr1	158627251	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:33:60
chr1	158627252	.	C	.	.	PASS	END=158627253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	158627254	.	A	C	27.12	LowGQX;LowQD;SB	BaseQRankSum=-2.550;DP=23;Dels=0.00;FS=13.570;HRun=5;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=0.161;QD=1.18;ReadPosRankSum=-1.323;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:15,8:23:57.10:57,0,383:60:27:0.348
chr1	158627255	.	C	.	.	PASS	END=158627260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	158627261	.	C	.	.	PASS	END=158627268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	158627269	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:33:60
chr1	158627270	.	A	.	.	PASS	END=158627285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	158627286	.	G	.	.	PASS	END=158627291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	158627292	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:70:60
chr1	158627293	.	A	.	.	PASS	END=158627316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	158627317	.	C	.	.	PASS	END=158627344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	158627345	.	A	.	.	PASS	END=158627436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	158627437	.	G	.	.	PASS	END=158627466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	158627467	.	C	.	.	PASS	END=158627488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	158627489	.	G	.	.	PASS	END=158627504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	158627505	.	A	.	.	PASS	END=158627519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	158627520	.	T	.	.	PASS	END=158627524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:78:60
chr1	158627525	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:44:60
chr1	158627526	.	G	.	.	PASS	END=158627535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	158631026	.	A	.	.	PASS	END=158631065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	158631066	.	A	.	.	PASS	END=158631088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	158631089	.	T	.	.	PASS	END=158631123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	158631124	.	G	.	.	PASS	END=158631163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	158631164	.	T	.	.	PASS	END=158631224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	158631225	.	T	.	.	PASS	END=158631250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	158632441	.	T	.	.	PASS	END=158632455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	158632456	.	T	.	.	PASS	END=158632459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	158632460	.	C	.	.	PASS	END=158632461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:48:60
chr1	158632462	.	A	.	.	PASS	END=158632473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	158632474	.	T	.	.	PASS	END=158632479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	158632480	.	G	.	.	PASS	END=158632488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	158632489	.	A	.	.	PASS	END=158632524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	158632525	.	C	.	.	PASS	END=158632556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	158632557	.	C	.	.	PASS	END=158632674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	158632675	.	A	.	.	PASS	END=158632719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	158632720	.	G	.	.	PASS	END=158632740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	158632741	.	G	.	.	PASS	END=158632786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	158636055	.	C	.	.	PASS	END=158636056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:66:59
chr1	158636057	.	G	.	.	PASS	END=158636070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:84:60
chr1	158636071	.	A	.	.	PASS	END=158636084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	158636085	.	G	.	.	PASS	END=158636126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	158636127	.	C	.	.	PASS	END=158636153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	158636154	.	A	.	.	PASS	END=158636190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	158636191	.	G	.	.	PASS	END=158636276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	158636277	.	C	.	.	PASS	END=158636306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	158636307	.	A	.	.	PASS	END=158636330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	158636331	.	T	.	.	PASS	END=158636338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	158637597	.	T	.	.	PASS	END=158637619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	158637620	.	A	.	.	PASS	END=158637627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	158637628	.	C	.	.	PASS	END=158637629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:65:60
chr1	158637630	.	A	.	.	PASS	END=158637639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	158637640	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:57:60
chr1	158637641	.	T	.	.	PASS	END=158637665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	158637666	.	C	.	.	PASS	END=158637682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	158637683	.	A	.	.	PASS	END=158637713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	158637714	.	C	.	.	PASS	END=158637821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	158637822	.	T	.	.	PASS	END=158637841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	158637842	.	T	.	.	PASS	END=158637843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	158637844	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:71:60
chr1	158637845	.	T	.	.	PASS	END=158637852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr1	158637853	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:48:61
chr1	158637854	.	T	.	.	PASS	END=158637856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:69:60
chr1	158637857	.	G	.	.	PASS	END=158637861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:57:60
chr1	158637862	.	G	.	72.12	PASS	DP=32;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:25:32:42.13:60:42
chr1	158637863	.	A	.	.	PASS	END=158637864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	158637865	.	G	.	32.81	LowGQX	DP=29;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:22:28:2.81:60:3
chr1	158637866	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:57:60
chr1	158637867	.	A	.	.	PASS	END=158637890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	158637891	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:69:61
chr1	158637892	.	A	.	.	PASS	END=158637893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:61
chr1	158637894	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:66:61
chr1	158637895	.	A	.	.	PASS	END=158637897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:61
chr1	158637898	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:75:61
chr1	158637899	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:99:61
chr1	158637900	.	G	.	.	PASS	END=158637903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:61
chr1	158639147	.	A	.	.	PASS	END=158639159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	158639160	.	C	.	.	PASS	END=158639196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	158639197	.	C	.	.	PASS	END=158639250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	158639251	.	G	.	.	PASS	END=158639347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	158639348	.	T	.	.	PASS	END=158639404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	158639448	.	T	.	.	PASS	END=158639481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	158639482	.	T	.	.	PASS	END=158639506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	158639507	.	G	.	.	PASS	END=158639600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	158639601	.	A	G	1111.43	PASS	BaseQRankSum=-2.317;DP=113;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.7313;MQ=60;MQ0=0;MQRankSum=0.118;QD=9.84;ReadPosRankSum=0.497;SB=-633.88	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:57,56:113:99:1141,0,1378:60:99:0.496
chr1	158639602	.	T	.	.	PASS	END=158639627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	158641082	.	A	.	.	PASS	END=158641102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	158641103	.	C	.	.	PASS	END=158641203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	158641204	.	T	.	.	PASS	END=158641224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	158641225	.	C	.	.	PASS	END=158641254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	158641255	.	A	.	.	PASS	END=158641274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	158641275	.	T	.	.	PASS	END=158641277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	158641278	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:54:60
chr1	158641279	.	T	.	.	PASS	END=158641292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	158641293	.	C	.	.	PASS	END=158641294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	158641798	.	T	.	.	PASS	END=158641828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	158641829	.	G	.	.	PASS	END=158641923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	158641924	.	C	.	.	PASS	END=158641948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:96:60
chr1	158641949	.	T	.	.	PASS	END=158641969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	158641970	.	T	.	.	PASS	END=158641980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	158641981	.	T	.	.	PASS	END=158641983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	158641984	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:30:60
chr1	158641985	.	A	.	.	PASS	END=158642001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	158642002	.	G	.	.	PASS	END=158642011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	158642012	.	A	.	.	PASS	END=158642016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	158642017	.	A	.	.	PASS	END=158642031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	158642032	.	T	.	.	PASS	END=158642036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	158642037	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:45:60
chr1	158644068	.	A	.	.	PASS	END=158644104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	158644105	.	T	A	1144.03	PASS	BaseQRankSum=-0.764;DP=101;Dels=0.00;FS=0.797;HRun=0;HaplotypeScore=8.5745;MQ=60;MQ0=0;MQRankSum=-1.437;QD=11.33;ReadPosRankSum=1.994;SB=-636.43	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:52,49:101:99:1174,0,1261:60:99:0.485
chr1	158644106	.	T	.	.	PASS	END=158644172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	158644173	.	A	.	.	PASS	END=158644210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	158644211	.	C	.	.	PASS	END=158644221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:78:60
chr1	158644222	.	T	.	.	PASS	END=158644249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	158644250	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:42:60
chr1	158644251	.	G	.	.	PASS	END=158644271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	158644279	.	T	.	.	PASS	END=158644320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:79:60
chr1	158644321	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr1	158644322	.	T	.	.	PASS	END=158644374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	158644375	.	A	.	.	PASS	END=158644389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	158644390	.	A	.	.	PASS	END=158644478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	158644479	.	G	.	.	PASS	END=158644516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	158645880	.	A	.	.	PASS	END=158645887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	158645888	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:75:60
chr1	158645889	.	C	.	.	PASS	END=158645921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	158645922	.	A	.	.	PASS	END=158645975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:84:60
chr1	158645976	.	C	.	.	PASS	END=158646015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	158646016	.	C	.	.	PASS	END=158646047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	158646048	.	A	.	.	PASS	END=158646132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	158646133	.	C	.	.	PASS	END=158646136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:82:60
chr1	158647429	.	A	.	.	PASS	END=158647470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	158647471	.	G	.	.	PASS	END=158647494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	158647495	.	A	T	2729.21	PASS	DP=103;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7542;MQ=60;MQ0=1;QD=26.50;SB=-1800.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,103:103:99:2762,202,0:60:99:1.000
chr1	158647496	.	G	.	.	PASS	END=158647521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	158647522	.	A	G	1029.54	PASS	BaseQRankSum=-1.327;DP=105;Dels=0.00;FS=1.624;HRun=1;HaplotypeScore=4.7346;MQ=60;MQ0=1;MQRankSum=-1.496;QD=9.81;ReadPosRankSum=0.466;SB=-633.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:56,49:105:99:1060,0,1349:60:99:0.467
chr1	158647523	.	C	.	.	PASS	END=158647564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	158647565	.	T	.	.	PASS	END=158647596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	158647597	.	G	.	.	PASS	END=158647617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:88:60
chr1	158647618	.	C	.	.	PASS	END=158647619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	158647620	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:63:60
chr1	158647621	.	A	.	.	PASS	END=158647622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	158647623	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:57:60
chr1	158647624	.	C	.	.	PASS	END=158647630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	158647631	.	T	A	965.26	PASS	DP=32;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=30.16;SB=-300.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,32:32:75.24:998,75,0:60:75:1.000
chr1	158647632	.	C	.	.	PASS	END=158647654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	158647655	.	G	.	.	PASS	END=158647666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	158647667	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:24:60
chr1	158647668	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:63:60
chr1	158647669	.	T	C	349.21	PASS	BaseQRankSum=-1.672;DP=26;Dels=0.00;FS=2.231;HRun=0;HaplotypeScore=2.8935;MQ=60;MQ0=0;MQRankSum=0.129;QD=13.43;ReadPosRankSum=-1.312;SB=-94.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:12,14:26:99:379,0,372:60:99:0.538
chr1	158647670	.	T	.	.	PASS	END=158647675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	158648140	.	T	.	.	PASS	END=158648164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	158648165	.	C	.	.	PASS	END=158648176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	158648177	.	G	.	.	PASS	END=158648214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	158648215	.	G	.	.	PASS	END=158648322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	158648323	.	T	.	.	PASS	END=158648355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	158648356	.	A	.	.	PASS	END=158648367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	158648368	.	A	.	.	PASS	END=158648375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	158650322	.	C	.	.	PASS	END=158650339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:60
chr1	158650340	.	T	.	.	PASS	END=158650364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	158650365	.	C	.	.	PASS	END=158650391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	158650392	.	T	.	.	PASS	END=158650503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	158650504	.	A	.	.	PASS	END=158650532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	158650533	.	A	.	.	PASS	END=158650552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	158650553	.	A	.	.	PASS	END=158650570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	158651266	.	T	.	.	PASS	END=158651284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	158651285	.	G	.	.	PASS	END=158651302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	158651303	.	T	.	.	PASS	END=158651345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	158651346	.	C	.	.	PASS	END=158651351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	158651352	.	C	.	.	PASS	END=158651447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	158651448	.	C	.	.	PASS	END=158651500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	158651501	.	A	.	.	PASS	END=158651508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	158653110	.	C	.	.	PASS	END=158653145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	158653146	.	G	.	.	PASS	END=158653153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	158653154	.	C	.	.	PASS	END=158653188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	158653189	.	A	.	.	PASS	END=158653302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	158653303	.	A	.	.	PASS	END=158653337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	158654847	.	T	.	.	PASS	END=158654851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	158654852	.	A	G	177.89	PASS	BaseQRankSum=-0.380;DP=12;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.244;QD=14.82;ReadPosRankSum=0.135;SB=-25.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:5,7:12:96.31:208,0,96:60:96:0.583
chr1	158654853	.	G	.	.	PASS	END=158654856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	158654857	.	T	.	.	PASS	END=158654867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	158654868	.	G	.	.	PASS	END=158654878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	158654879	.	A	.	.	PASS	END=158654899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	158654900	.	G	.	.	PASS	END=158654921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:90:60
chr1	158654922	.	G	.	.	PASS	END=158654963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	158654964	.	C	.	.	PASS	END=158655026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	158655027	.	C	.	.	PASS	END=158655035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	158655036	.	G	A	1673.91	PASS	DP=73;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=10.4683;MQ=60;MQ0=0;QD=22.93;SB=-974.41	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,71:73:99:1707,126,0:60:99:1.000
chr1	158655037	.	A	.	.	PASS	END=158655052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	158655053	.	T	.	.	PASS	END=158655071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	158655072	.	T	.	.	PASS	END=158655103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	158655104	.	T	.	.	PASS	END=158655106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	158655107	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:27:60
chr1	158655108	.	C	.	.	PASS	END=158655113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	158655114	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:33:60
chr1	158655115	.	T	.	.	PASS	END=158655127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	158655128	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr1	158655129	.	C	.	.	PASS	END=158655133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	158655134	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:27:60
chr1	158655135	.	A	.	.	PASS	END=158655161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	158655162	.	C	A	598.30	PASS	DP=17;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=35.19;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,17:17:48.16:631,48,0:60:48:1.000
chr1	158655163	.	T	.	.	PASS	END=158655188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	158656233	.	T	.	.	PASS	END=158656280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	158656281	.	T	C	2198.74	PASS	DP=72;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=8.5223;MQ=60;MQ0=0;QD=30.54;SB=-855.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,71:72:99:2232,172,0:60:99:1.000
chr1	158656282	.	A	.	.	PASS	END=158656347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	158656347	.	C	CAG,CAGAG	3482.56	PASS	BaseQRankSum=-1.299;DP=79;FS=0.000;HaplotypeScore=383.9072;MQ=60;MQ0=0;MQRankSum=1.624;QD=44.08;ReadPosRankSum=0.812;SB=-1126.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/2:21,5,51:79:99:3483,2269,2121,224,0,121:60:99:0.727
chr1	158656348	.	A	.	.	PASS	END=158656365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	158669466	.	A	.	.	LowGQX	END=158669580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158669581	.	G	.	.	LowGQX	END=158670444	GT	./.
chr1	158686956	.	T	.	.	LowGQX	END=158687350	GT	./.
chr1	158687351	.	T	.	.	LowGQX	END=158687397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158687398	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	158687399	.	A	.	.	LowGQX	END=158687484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158687485	.	A	.	.	LowGQX	END=158687955	GT	./.
chr1	158724604	.	G	.	.	LowGQX	END=158724695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158724696	.	A	.	.	LowGQX	END=158725488	GT	./.
chr1	158725489	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725490	.	G	.	.	LowGQX	END=158725492	GT	./.
chr1	158725493	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725494	.	T	.	.	LowGQX	END=158725495	GT	./.
chr1	158725496	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725497	.	G	.	.	LowGQX	.	GT	./.
chr1	158725498	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725499	.	C	.	.	LowGQX	.	GT	./.
chr1	158725500	.	A	.	.	LowGQX	END=158725501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725502	.	A	.	.	LowGQX	END=158725505	GT	./.
chr1	158725506	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725507	.	T	.	.	LowGQX	.	GT	./.
chr1	158725508	.	T	.	.	LowGQX	END=158725511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725512	.	G	.	.	LowGQX	.	GT	./.
chr1	158725513	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725514	.	C	.	.	LowGQX	.	GT	./.
chr1	158725515	.	A	.	.	LowGQX	END=158725516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725517	.	T	.	.	LowGQX	END=158725518	GT	./.
chr1	158725519	.	T	.	.	LowGQX	END=158725521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725522	.	T	.	.	LowGQX	.	GT	./.
chr1	158725523	.	T	.	.	LowGQX	END=158725528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725529	.	T	.	.	LowGQX	.	GT	./.
chr1	158725530	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725531	.	C	.	.	LowGQX	.	GT	./.
chr1	158725532	.	T	.	.	LowGQX	END=158725542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725543	.	A	.	.	LowGQX	.	GT	./.
chr1	158725544	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725545	.	C	.	.	LowGQX	.	GT	./.
chr1	158725546	.	C	.	.	LowGQX	END=158725552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725553	.	C	.	.	LowGQX	.	GT	./.
chr1	158725554	.	T	.	.	LowGQX	END=158725557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725558	.	G	.	.	LowGQX	.	GT	./.
chr1	158725559	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725560	.	C	.	.	LowGQX	.	GT	./.
chr1	158725561	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725562	.	G	.	.	LowGQX	END=158725563	GT	./.
chr1	158725564	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725565	.	A	.	.	LowGQX	END=158725566	GT	./.
chr1	158725567	.	A	.	.	LowGQX	END=158725572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725573	.	A	.	.	LowGQX	.	GT	./.
chr1	158725574	.	C	.	.	LowGQX	END=158725577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725578	.	A	.	.	LowGQX	END=158725579	GT	./.
chr1	158725580	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725581	.	G	.	.	LowGQX	END=158725584	GT	./.
chr1	158725585	.	C	.	.	LowGQX	END=158725589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725590	.	G	.	.	LowGQX	END=158725592	GT	./.
chr1	158725593	.	A	.	.	LowGQX	END=158725594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725595	.	G	.	.	LowGQX	.	GT	./.
chr1	158725596	.	C	.	.	LowGQX	END=158725597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725598	.	T	.	.	LowGQX	END=158725600	GT	./.
chr1	158725601	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725602	.	C	.	.	LowGQX	END=158725603	GT	./.
chr1	158725604	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725605	.	T	.	.	LowGQX	.	GT	./.
chr1	158725606	.	A	.	.	LowGQX	END=158725609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725610	.	G	.	.	LowGQX	.	GT	./.
chr1	158725611	.	A	.	.	LowGQX	END=158725612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725613	.	G	.	.	LowGQX	.	GT	./.
chr1	158725614	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725615	.	G	.	.	LowGQX	END=158725619	GT	./.
chr1	158725620	.	G	.	.	LowGQX	END=158725624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725625	.	G	.	.	LowGQX	END=158725626	GT	./.
chr1	158725627	.	C	.	.	LowGQX	END=158725628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158725629	.	G	.	.	LowGQX	.	GT	./.
chr1	158725630	.	G	.	.	LowGQX	END=158725639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158735532	.	A	.	.	LowGQX	END=158735594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158735595	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	158735596	.	G	.	.	LowGQX	END=158735638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158735639	.	G	T	3.07	LowGQX;LowQD;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=1.53;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:30,0,33:60:3:0.500
chr1	158735640	.	T	.	.	LowGQX	END=158735690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158735691	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	158735692	.	G	.	.	LowGQX	END=158735739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158735740	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	158735741	.	G	.	.	LowGQX	END=158735771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158735772	.	T	.	.	LowGQX	.	GT	./.
chr1	158735773	.	T	.	.	LowGQX	END=158735891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158735892	.	A	G	47.39	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=23.69;SB=-38.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:79,6,0:60:6:1.000
chr1	158735893	.	T	.	.	LowGQX	END=158735936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158735937	.	C	.	.	LowGQX	.	GT	./.
chr1	158735938	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158735939	.	A	.	.	LowGQX	.	GT	./.
chr1	158735940	.	A	.	.	LowGQX	END=158735942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158735943	.	A	.	.	LowGQX	.	GT	./.
chr1	158735944	.	C	.	.	LowGQX	END=158735951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158735952	.	A	.	.	LowGQX	.	GT	./.
chr1	158735953	.	T	.	.	LowGQX	END=158735957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158735958	.	T	.	.	LowGQX	.	GT	./.
chr1	158735959	.	T	.	.	LowGQX	END=158735962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158735963	.	G	.	.	LowGQX	END=158735987	GT	./.
chr1	158735988	.	A	.	.	LowGQX	END=158735995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158735996	.	T	.	.	LowGQX	.	GT	./.
chr1	158735997	.	T	.	.	LowGQX	END=158736021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158736022	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	158736023	.	C	.	.	LowGQX	END=158736034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158736035	.	A	.	.	LowGQX	.	GT	./.
chr1	158736036	.	A	.	.	LowGQX	END=158736072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158736073	.	T	.	.	LowGQX	.	GT	./.
chr1	158736074	.	T	.	.	LowGQX	END=158736138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158736139	.	A	.	.	LowGQX	END=158736474	GT	./.
chr1	158746470	.	A	.	.	LowGQX	END=158747014	GT	./.
chr1	158747015	.	G	.	.	LowGQX	END=158747205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158747206	.	T	.	.	LowGQX	END=158747419	GT	./.
chr1	158747420	.	A	.	.	LowGQX	END=158747427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158811942	.	A	.	.	LowGQX	END=158812210	GT	./.
chr1	158813067	.	A	.	.	LowGQX	END=158813207	GT	./.
chr1	158813743	.	A	.	.	LowGQX	END=158813806	GT	./.
chr1	158813807	.	G	.	.	LowGQX	END=158813818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158813819	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	158813820	.	G	.	.	LowGQX	END=158813834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158813835	.	A	.	.	LowGQX	.	GT	./.
chr1	158813836	.	G	.	.	LowGQX	END=158813840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158813841	.	T	.	.	LowGQX	.	GT	./.
chr1	158813842	.	C	.	.	LowGQX	END=158813845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158813846	.	A	.	.	LowGQX	.	GT	./.
chr1	158813847	.	G	.	.	LowGQX	END=158813853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158813854	.	A	.	.	LowGQX	.	GT	./.
chr1	158813855	.	T	.	.	LowGQX	END=158813863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158813864	.	A	.	.	LowGQX	.	GT	./.
chr1	158813865	.	C	.	.	LowGQX	END=158813866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158813867	.	A	.	.	LowGQX	.	GT	./.
chr1	158813868	.	C	.	.	LowGQX	END=158813869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158813870	.	C	.	.	LowGQX	.	GT	./.
chr1	158813871	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158813872	.	A	.	.	LowGQX	.	GT	./.
chr1	158813873	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	158813874	.	A	.	.	LowGQX	.	GT	./.
chr1	158813875	.	C	.	.	LowGQX	END=158813878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158813879	.	A	.	.	LowGQX	.	GT	./.
chr1	158813880	.	T	.	.	LowGQX	END=158813881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158813882	.	A	.	.	LowGQX	END=158813883	GT	./.
chr1	158813884	.	C	.	.	LowGQX	END=158813885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158813886	.	A	.	.	LowGQX	.	GT	./.
chr1	158813887	.	C	.	.	LowGQX	END=158813894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158813895	.	A	.	.	LowGQX	.	GT	./.
chr1	158813896	.	A	.	.	LowGQX	END=158813897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158813898	.	A	.	.	LowGQX	.	GT	./.
chr1	158813899	.	C	.	.	LowGQX	END=158813914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158815375	.	A	.	.	LowGQX	END=158815795	GT	./.
chr1	158817516	.	A	.	.	LowGQX	END=158817547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158817548	.	G	.	.	LowGQX	END=158817648	GT	./.
chr1	158817649	.	A	.	.	LowGQX	END=158817684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158817685	.	T	.	.	LowGQX	.	GT	./.
chr1	158817686	.	G	.	.	LowGQX	END=158817690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158817691	.	T	.	.	LowGQX	.	GT	./.
chr1	158817692	.	C	.	.	LowGQX	END=158817708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158818954	.	T	.	.	LowGQX	END=158819053	GT	./.
chr1	158906699	.	A	.	.	LowGQX	.	GT	./.
chr1	158906700	.	G	.	.	LowGQX	END=158906763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158906764	.	T	.	.	LowGQX	.	GT	./.
chr1	158906765	.	T	.	.	LowGQX	END=158906813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158906814	.	A	.	.	LowGQX	.	GT	./.
chr1	158906815	.	A	.	.	LowGQX	END=158906835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158906836	.	A	.	.	LowGQX	END=158906837	GT	./.
chr1	158906838	.	T	.	.	LowGQX	END=158906840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158906841	.	G	.	.	LowGQX	END=158906860	GT	./.
chr1	158906861	.	A	.	.	LowGQX	END=158906864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158906865	.	G	.	.	LowGQX	.	GT	./.
chr1	158906866	.	T	.	.	LowGQX	END=158906871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158906872	.	G	.	.	LowGQX	.	GT	./.
chr1	158906873	.	G	.	.	LowGQX	END=158906877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158906878	.	G	.	.	LowGQX	.	GT	./.
chr1	158906879	.	C	.	.	LowGQX	END=158906886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158906887	.	G	.	.	LowGQX	.	GT	./.
chr1	158906888	.	G	.	.	LowGQX	END=158906889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158906890	.	A	.	.	LowGQX	.	GT	./.
chr1	158906891	.	A	.	.	LowGQX	END=158906895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158906896	.	A	.	.	LowGQX	.	GT	./.
chr1	158906897	.	T	.	.	LowGQX	END=158906904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158906905	.	T	.	.	LowGQX	.	GT	./.
chr1	158906906	.	T	.	.	LowGQX	END=158906940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158906941	.	A	.	.	LowGQX	.	GT	./.
chr1	158906942	.	C	.	.	LowGQX	END=158906956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158906957	.	A	.	.	LowGQX	.	GT	./.
chr1	158906958	.	G	.	.	LowGQX	END=158906967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158908185	.	A	.	.	LowGQX	END=158908195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158908196	.	A	.	.	LowGQX	.	GT	./.
chr1	158908197	.	A	.	.	LowGQX	END=158908245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158908246	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158908247	.	A	.	.	LowGQX	END=158908250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	158908251	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158908252	.	G	.	.	LowGQX	END=158908261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158908262	.	C	.	.	LowGQX	END=158908265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	158908266	.	T	.	.	LowGQX	END=158908270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	158908271	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	158908272	.	T	.	.	LowGQX	END=158908292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	158908293	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	158908294	.	C	.	.	LowGQX	END=158908320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	158908321	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	158908322	.	T	.	.	LowGQX	END=158908326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	158908327	.	C	A	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=-0.736;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr1	158908328	.	C	.	.	LowGQX	END=158908334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	158908868	.	A	.	.	LowGQX	END=158908874	GT	./.
chr1	158908875	.	A	.	.	LowGQX	END=158908925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158908926	.	A	.	.	LowGQX	.	GT	./.
chr1	158908927	.	G	.	.	LowGQX	END=158908960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158908961	.	G	.	.	LowGQX	.	GT	./.
chr1	158908962	.	C	.	.	LowGQX	END=158909012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158909013	.	T	.	.	LowGQX	.	GT	./.
chr1	158909014	.	C	.	.	LowGQX	END=158909024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158909025	.	T	.	.	LowGQX	END=158909039	GT	./.
chr1	158909192	.	G	.	.	LowGQX	END=158909351	GT	./.
chr1	158911765	.	A	.	.	LowGQX	END=158912191	GT	./.
chr1	158913578	.	A	.	.	LowGQX	END=158913639	GT	./.
chr1	158913640	.	G	.	.	LowGQX	END=158913725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158913726	.	A	.	.	LowGQX	.	GT	./.
chr1	158913727	.	A	.	.	LowGQX	END=158913766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158913767	.	A	.	.	LowGQX	.	GT	./.
chr1	158913768	.	G	.	.	LowGQX	END=158913770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158914663	.	A	.	.	LowGQX	END=158914834	GT	./.
chr1	158943435	.	A	.	.	LowGQX	END=158943558	GT	./.
chr1	158946455	.	C	.	.	LowGQX	END=158946527	GT	./.
chr1	158946528	.	A	.	.	LowGQX	END=158946554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158984458	.	T	.	.	LowGQX	END=158984737	GT	./.
chr1	158985660	.	A	.	.	LowGQX	END=158985779	GT	./.
chr1	158986321	.	A	.	.	LowGQX	END=158986453	GT	./.
chr1	158986454	.	C	.	.	LowGQX	END=158986457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158986458	.	T	.	.	LowGQX	.	GT	./.
chr1	158986459	.	T	.	.	LowGQX	END=158986461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158986462	.	C	.	.	LowGQX	.	GT	./.
chr1	158986463	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158986464	.	G	.	.	LowGQX	.	GT	./.
chr1	158986465	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158986466	.	T	.	.	LowGQX	.	GT	./.
chr1	158986467	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158986468	.	C	.	.	LowGQX	.	GT	./.
chr1	158986469	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158986470	.	C	.	30.88	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:1.82:60:2
chr1	158986471	.	C	.	.	LowGQX	END=158986476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158986477	.	G	C	9.80	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=4.90;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,1:2:3.01:39,3,0:60:3:0.500
chr1	158986478	.	T	.	.	LowGQX	END=158986487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158986488	.	G	.	.	LowGQX	.	GT	./.
chr1	158986489	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158986490	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	158986491	.	G	.	.	LowGQX	END=158986492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158988017	.	A	.	.	LowGQX	END=158988443	GT	./.
chr1	158990119	.	T	.	.	LowGQX	END=158990134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158990135	.	C	.	.	LowGQX	.	GT	./.
chr1	158990136	.	A	.	.	LowGQX	END=158990140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	158990141	.	A	.	.	LowGQX	.	GT	./.
chr1	158990142	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158990143	.	C	.	.	LowGQX	.	GT	./.
chr1	158990144	.	A	.	.	LowGQX	END=158990149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158990150	.	C	.	.	LowGQX	.	GT	./.
chr1	158990151	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158990152	.	A	.	.	LowGQX	END=158990153	GT	./.
chr1	158990154	.	A	.	.	LowGQX	END=158990158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158990159	.	A	.	.	LowGQX	.	GT	./.
chr1	158990160	.	C	.	.	LowGQX	END=158990161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158990162	.	A	.	.	LowGQX	.	GT	./.
chr1	158990163	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158990164	.	A	.	.	LowGQX	.	GT	./.
chr1	158990165	.	T	.	.	LowGQX	END=158990167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158990168	.	A	.	.	LowGQX	.	GT	./.
chr1	158990169	.	G	.	.	LowGQX	END=158990175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158990176	.	A	.	.	LowGQX	.	GT	./.
chr1	158990177	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158990178	.	A	.	.	LowGQX	.	GT	./.
chr1	158990179	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158990180	.	G	.	.	LowGQX	.	GT	./.
chr1	158990181	.	A	.	.	LowGQX	END=158990183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158990184	.	A	.	.	LowGQX	.	GT	./.
chr1	158990185	.	A	.	.	LowGQX	END=158990197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158990198	.	G	.	.	LowGQX	.	GT	./.
chr1	158990199	.	G	.	.	LowGQX	END=158990203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158990204	.	G	.	.	LowGQX	.	GT	./.
chr1	158990205	.	A	.	.	LowGQX	END=158990207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158990208	.	A	.	.	LowGQX	.	GT	./.
chr1	158990209	.	T	.	.	LowGQX	END=158990227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158990228	.	A	.	.	LowGQX	END=158990229	GT	./.
chr1	158990230	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158990231	.	A	.	.	LowGQX	END=158990233	GT	./.
chr1	158990234	.	G	.	.	LowGQX	END=158990235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	158990236	.	G	.	.	LowGQX	END=158990321	GT	./.
chr1	159002312	.	A	.	.	LowGQX	END=159002483	GT	./.
chr1	159015054	.	A	.	.	LowGQX	END=159015256	GT	./.
chr1	159019190	.	G	.	.	LowGQX	END=159019389	GT	./.
chr1	159021467	.	A	.	.	LowGQX	END=159021507	GT	./.
chr1	159021508	.	A	.	.	LowGQX	END=159021511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021512	.	A	.	.	LowGQX	.	GT	./.
chr1	159021513	.	A	.	.	LowGQX	END=159021518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021519	.	T	.	.	LowGQX	.	GT	./.
chr1	159021520	.	G	.	.	LowGQX	END=159021522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021523	.	C	.	.	LowGQX	.	GT	./.
chr1	159021524	.	A	.	.	LowGQX	END=159021530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021531	.	C	.	.	LowGQX	END=159021532	GT	./.
chr1	159021533	.	T	.	.	LowGQX	END=159021534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021535	.	A	.	.	LowGQX	END=159021536	GT	./.
chr1	159021537	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021538	.	G	.	.	LowGQX	.	GT	./.
chr1	159021539	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021540	.	A	.	.	LowGQX	.	GT	./.
chr1	159021541	.	G	.	.	LowGQX	END=159021542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021543	.	G	.	.	LowGQX	END=159021544	GT	./.
chr1	159021545	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021546	.	G	.	.	LowGQX	.	GT	./.
chr1	159021547	.	G	.	.	LowGQX	END=159021548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021549	.	G	.	.	LowGQX	.	GT	./.
chr1	159021550	.	C	.	.	LowGQX	END=159021553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021554	.	A	.	.	LowGQX	END=159021555	GT	./.
chr1	159021556	.	G	.	.	LowGQX	END=159021557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021558	.	A	.	.	LowGQX	.	GT	./.
chr1	159021559	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021560	.	C	.	.	LowGQX	END=159021561	GT	./.
chr1	159021562	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021563	.	A	.	.	LowGQX	.	GT	./.
chr1	159021564	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021565	.	T	.	.	LowGQX	.	GT	./.
chr1	159021566	.	C	.	.	LowGQX	END=159021567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021568	.	T	.	.	LowGQX	END=159021570	GT	./.
chr1	159021571	.	G	.	.	LowGQX	END=159021572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021573	.	A	.	.	LowGQX	.	GT	./.
chr1	159021574	.	T	.	.	LowGQX	END=159021577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021578	.	A	.	.	LowGQX	.	GT	./.
chr1	159021579	.	G	.	.	LowGQX	END=159021580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021581	.	C	.	.	LowGQX	.	GT	./.
chr1	159021582	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021583	.	A	.	.	LowGQX	.	GT	./.
chr1	159021584	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021585	.	A	.	.	LowGQX	END=159021587	GT	./.
chr1	159021588	.	G	.	.	LowGQX	END=159021589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021590	.	A	.	.	LowGQX	.	GT	./.
chr1	159021591	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021592	.	A	.	.	LowGQX	.	GT	./.
chr1	159021593	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021594	.	G	.	.	LowGQX	.	GT	./.
chr1	159021595	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021596	.	A	.	.	LowGQX	END=159021597	GT	./.
chr1	159021598	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021599	.	T	.	.	LowGQX	END=159021600	GT	./.
chr1	159021601	.	T	.	.	LowGQX	END=159021610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021611	.	C	.	.	LowGQX	END=159021615	GT	./.
chr1	159021616	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021617	.	C	.	.	LowGQX	END=159021623	GT	./.
chr1	159021624	.	G	.	.	LowGQX	END=159021625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021626	.	A	.	.	LowGQX	END=159021628	GT	./.
chr1	159021629	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021630	.	A	.	.	LowGQX	END=159021632	GT	./.
chr1	159021633	.	C	.	.	LowGQX	END=159021635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021636	.	C	.	.	LowGQX	.	GT	./.
chr1	159021637	.	C	.	.	LowGQX	END=159021643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021644	.	A	.	.	LowGQX	.	GT	./.
chr1	159021645	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021646	.	G	.	.	LowGQX	.	GT	./.
chr1	159021647	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021648	.	T	.	.	LowGQX	END=159021649	GT	./.
chr1	159021650	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021651	.	T	.	.	LowGQX	END=159021654	GT	./.
chr1	159021655	.	A	.	.	LowGQX	END=159021658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159021659	.	A	.	.	LowGQX	END=159021890	GT	./.
chr1	159023321	.	A	.	.	LowGQX	END=159023334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159023335	.	G	.	.	LowGQX	.	GT	./.
chr1	159023336	.	G	.	.	LowGQX	END=159023352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159023353	.	G	.	.	LowGQX	.	GT	./.
chr1	159023354	.	A	.	.	LowGQX	END=159023364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159023365	.	A	.	.	LowGQX	END=159023516	GT	./.
chr1	159024602	.	T	.	.	LowGQX	END=159024651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159024652	.	T	.	.	LowGQX	END=159024701	GT	./.
chr1	159032446	.	T	.	.	LowGQX	END=159032545	GT	./.
chr1	159033274	.	A	.	.	LowGQX	END=159033466	GT	./.
chr1	159035698	.	A	.	.	LowGQX	END=159036121	GT	./.
chr1	159038356	.	A	.	.	LowGQX	END=159038419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159038420	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	159038421	.	A	.	.	LowGQX	END=159038486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159038487	.	A	.	.	LowGQX	END=159038535	GT	./.
chr1	159043026	.	A	.	.	LowGQX	END=159043028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043029	.	T	.	.	LowGQX	END=159043030	GT	./.
chr1	159043031	.	T	.	.	LowGQX	END=159043038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043039	.	T	.	.	LowGQX	.	GT	./.
chr1	159043040	.	C	.	.	LowGQX	END=159043053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043054	.	T	.	.	LowGQX	.	GT	./.
chr1	159043055	.	T	.	.	LowGQX	END=159043061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043062	.	A	.	.	LowGQX	.	GT	./.
chr1	159043063	.	A	.	.	LowGQX	END=159043067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043068	.	A	.	.	LowGQX	.	GT	./.
chr1	159043069	.	T	.	.	LowGQX	END=159043071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043072	.	T	.	.	LowGQX	.	GT	./.
chr1	159043073	.	T	.	.	LowGQX	END=159043086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043087	.	A	.	.	LowGQX	.	GT	./.
chr1	159043088	.	T	.	.	LowGQX	END=159043092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043093	.	A	.	.	LowGQX	.	GT	./.
chr1	159043094	.	T	.	.	LowGQX	END=159043096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043097	.	T	.	.	LowGQX	END=159043103	GT	./.
chr1	159043104	.	C	.	.	LowGQX	END=159043111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043112	.	A	.	.	LowGQX	.	GT	./.
chr1	159043113	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043114	.	A	.	.	LowGQX	.	GT	./.
chr1	159043115	.	C	.	.	LowGQX	END=159043126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043127	.	T	.	.	LowGQX	.	GT	./.
chr1	159043128	.	T	.	.	LowGQX	END=159043130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043131	.	A	.	.	LowGQX	END=159043133	GT	./.
chr1	159043134	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043135	.	A	.	.	LowGQX	.	GT	./.
chr1	159043136	.	T	.	.	LowGQX	END=159043137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043138	.	A	.	.	LowGQX	.	GT	./.
chr1	159043139	.	A	.	.	LowGQX	END=159043141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043142	.	T	.	.	LowGQX	.	GT	./.
chr1	159043143	.	A	.	.	LowGQX	END=159043149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043150	.	T	.	.	LowGQX	.	GT	./.
chr1	159043151	.	G	.	.	LowGQX	END=159043154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043155	.	T	.	.	LowGQX	.	GT	./.
chr1	159043156	.	C	.	.	LowGQX	END=159043158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043159	.	T	.	.	LowGQX	.	GT	./.
chr1	159043160	.	T	.	.	LowGQX	END=159043165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043166	.	T	.	.	LowGQX	.	GT	./.
chr1	159043167	.	A	.	.	LowGQX	END=159043194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043195	.	T	.	.	LowGQX	.	GT	./.
chr1	159043196	.	C	.	.	LowGQX	END=159043197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043198	.	T	.	.	LowGQX	.	GT	./.
chr1	159043199	.	C	.	.	LowGQX	END=159043237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043238	.	T	.	.	LowGQX	.	GT	./.
chr1	159043239	.	G	.	.	LowGQX	END=159043253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159043254	.	T	.	.	LowGQX	END=159043291	GT	./.
chr1	159141550	.	A	.	.	LowGQX	END=159141702	GT	./.
chr1	159159509	.	A	.	.	LowGQX	END=159159664	GT	./.
chr1	159161724	.	A	.	.	LowGQX	END=159161751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159161752	.	A	.	.	LowGQX	.	GT	./.
chr1	159161753	.	C	.	.	LowGQX	END=159161754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159161755	.	G	.	.	LowGQX	.	GT	./.
chr1	159161756	.	T	.	.	LowGQX	END=159161769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159161770	.	A	.	.	LowGQX	.	GT	./.
chr1	159161771	.	C	.	.	LowGQX	END=159161791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159161792	.	T	.	.	LowGQX	.	GT	./.
chr1	159161793	.	G	.	.	LowGQX	END=159161795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159161796	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	159161797	.	G	.	.	LowGQX	END=159161810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	159161811	.	A	.	.	LowGQX	.	GT	./.
chr1	159161812	.	T	.	.	LowGQX	END=159161819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	159161820	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	159161821	.	T	.	.	LowGQX	END=159161826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	159161827	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	159161828	.	A	.	.	LowGQX	END=159161848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	159161849	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	159161850	.	C	.	.	LowGQX	END=159161868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	159162306	.	T	.	.	LowGQX	END=159162522	GT	./.
chr1	159163211	.	A	.	.	LowGQX	.	GT	./.
chr1	159163212	.	G	.	.	LowGQX	END=159163213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163214	.	A	.	.	LowGQX	.	GT	./.
chr1	159163215	.	A	.	.	LowGQX	END=159163223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163224	.	A	.	.	LowGQX	.	GT	./.
chr1	159163225	.	A	.	.	LowGQX	END=159163239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163240	.	G	.	.	LowGQX	END=159163241	GT	./.
chr1	159163242	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163243	.	A	.	.	LowGQX	.	GT	./.
chr1	159163244	.	T	.	.	LowGQX	END=159163246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163247	.	A	.	.	LowGQX	.	GT	./.
chr1	159163248	.	T	.	.	LowGQX	END=159163250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163251	.	T	.	.	LowGQX	.	GT	./.
chr1	159163252	.	C	.	.	LowGQX	END=159163256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163257	.	C	.	.	LowGQX	.	GT	./.
chr1	159163258	.	G	.	.	LowGQX	END=159163264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163265	.	A	.	.	LowGQX	END=159163289	GT	./.
chr1	159163290	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163291	.	C	.	.	LowGQX	.	GT	./.
chr1	159163292	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163293	.	T	.	.	LowGQX	.	GT	./.
chr1	159163294	.	C	.	.	LowGQX	END=159163302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163303	.	A	.	.	LowGQX	.	GT	./.
chr1	159163304	.	G	.	.	LowGQX	END=159163307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163308	.	G	.	.	LowGQX	.	GT	./.
chr1	159163309	.	C	.	.	LowGQX	END=159163313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163314	.	C	.	.	LowGQX	.	GT	./.
chr1	159163315	.	G	.	.	LowGQX	END=159163316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163317	.	C	.	.	LowGQX	END=159163318	GT	./.
chr1	159163319	.	C	.	.	LowGQX	END=159163320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163321	.	C	.	.	LowGQX	END=159163322	GT	./.
chr1	159163323	.	T	.	.	LowGQX	END=159163329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163330	.	A	.	.	LowGQX	.	GT	./.
chr1	159163331	.	G	.	.	LowGQX	END=159163332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163333	.	G	.	.	LowGQX	END=159163334	GT	./.
chr1	159163335	.	G	.	.	LowGQX	END=159163339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163340	.	A	.	.	LowGQX	.	GT	./.
chr1	159163341	.	G	.	.	LowGQX	END=159163342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163343	.	A	.	.	LowGQX	.	GT	./.
chr1	159163344	.	C	.	.	LowGQX	END=159163349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163350	.	G	.	.	LowGQX	.	GT	./.
chr1	159163351	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163352	.	T	.	.	LowGQX	.	GT	./.
chr1	159163353	.	G	.	.	LowGQX	END=159163361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163362	.	C	.	.	LowGQX	.	GT	./.
chr1	159163363	.	T	.	.	LowGQX	END=159163364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163365	.	C	.	.	LowGQX	.	GT	./.
chr1	159163366	.	C	.	.	LowGQX	END=159163367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163368	.	T	.	.	LowGQX	.	GT	./.
chr1	159163369	.	G	.	.	LowGQX	END=159163372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163373	.	T	.	.	LowGQX	.	GT	./.
chr1	159163374	.	T	.	.	LowGQX	END=159163385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163386	.	T	.	.	LowGQX	.	GT	./.
chr1	159163387	.	G	.	.	LowGQX	END=159163392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163393	.	G	.	.	LowGQX	.	GT	./.
chr1	159163394	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163395	.	A	.	.	LowGQX	.	GT	./.
chr1	159163396	.	A	.	.	LowGQX	END=159163420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163421	.	A	.	.	LowGQX	END=159163422	GT	./.
chr1	159163423	.	G	.	.	LowGQX	END=159163427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163428	.	C	.	.	LowGQX	.	GT	./.
chr1	159163429	.	A	.	.	LowGQX	END=159163431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163432	.	A	.	.	LowGQX	END=159163433	GT	./.
chr1	159163434	.	G	.	.	LowGQX	END=159163435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163436	.	A	.	.	LowGQX	.	GT	./.
chr1	159163437	.	T	.	.	LowGQX	END=159163439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159163440	.	T	.	.	LowGQX	END=159163544	GT	./.
chr1	159163658	.	A	.	.	LowGQX	END=159163832	GT	./.
chr1	159166150	.	A	.	.	LowGQX	END=159166157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159166158	.	A	.	.	LowGQX	.	GT	./.
chr1	159166159	.	C	.	.	LowGQX	END=159166161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159166162	.	A	.	.	LowGQX	.	GT	./.
chr1	159166163	.	C	.	.	LowGQX	END=159166221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159166222	.	T	.	.	LowGQX	END=159166249	GT	./.
chr1	159166679	.	A	.	.	LowGQX	END=159166742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159166743	.	G	.	.	LowGQX	END=159166744	GT	./.
chr1	159166745	.	G	.	.	LowGQX	END=159166752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159166753	.	C	.	.	LowGQX	.	GT	./.
chr1	159166754	.	T	.	.	LowGQX	END=159166757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159166758	.	C	.	.	LowGQX	END=159166759	GT	./.
chr1	159166760	.	T	.	.	LowGQX	END=159166776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159166777	.	C	.	.	LowGQX	.	GT	./.
chr1	159166778	.	A	.	.	LowGQX	END=159166784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159166785	.	C	.	.	LowGQX	.	GT	./.
chr1	159166786	.	C	.	.	LowGQX	END=159166787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159166788	.	A	.	.	LowGQX	.	GT	./.
chr1	159166789	.	C	.	.	LowGQX	END=159166801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159166802	.	A	.	.	LowGQX	.	GT	./.
chr1	159166803	.	C	.	.	LowGQX	END=159166807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159166808	.	A	.	.	LowGQX	.	GT	./.
chr1	159166809	.	A	.	.	LowGQX	END=159166813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159166814	.	G	.	.	LowGQX	END=159166815	GT	./.
chr1	159166816	.	C	.	.	LowGQX	END=159166823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159166824	.	A	.	.	LowGQX	.	GT	./.
chr1	159166825	.	G	.	.	LowGQX	END=159166828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159166829	.	T	.	.	LowGQX	.	GT	./.
chr1	159166830	.	A	.	.	LowGQX	END=159166831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159166832	.	T	.	.	LowGQX	.	GT	./.
chr1	159166833	.	A	.	.	LowGQX	END=159166834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159166835	.	A	.	.	LowGQX	.	GT	./.
chr1	159166836	.	C	.	.	LowGQX	END=159166841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159166842	.	A	.	.	LowGQX	.	GT	./.
chr1	159166843	.	T	.	.	LowGQX	END=159166852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159169539	.	A	.	.	LowGQX	END=159169640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	159169641	.	T	C	52.84	LowGQ;LowGQX	DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=17.61;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:6.02:84,6,0:60:6:1.000
chr1	159169642	.	G	.	.	LowGQX	END=159169667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159169668	.	T	.	.	LowGQX	.	GT	./.
chr1	159170592	.	A	.	.	LowGQX	END=159170714	GT	./.
chr1	159174651	.	A	.	.	PASS	END=159174663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:97:60
chr1	159174664	.	C	.	.	PASS	END=159174767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	159174768	.	A	.	.	PASS	END=159174784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	159174785	.	A	.	.	PASS	END=159174806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	159174807	.	T	.	.	PASS	END=159174810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	159175223	.	G	.	.	PASS	END=159175235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	159175236	.	G	.	.	PASS	END=159175299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	159175300	.	A	.	.	PASS	END=159175353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:60
chr1	159175354	.	G	A	2898.47	PASS	BaseQRankSum=-0.383;DP=250;Dels=0.00;FS=6.911;HRun=0;HaplotypeScore=27.5661;MQ=60;MQ0=0;MQRankSum=0.212;QD=11.59;ReadPosRankSum=1.863;SB=-1376.92	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:120,126:250:99:2928,0,3251:60:99:0.512
chr1	159175355	.	T	.	.	PASS	END=159175404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr1	159175405	.	A	.	.	PASS	END=159175442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:326:99:60
chr1	159175443	.	G	.	.	PASS	END=159175491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:431:99:60
chr1	159175492	.	T	.	.	PASS	END=159175574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:441:99:60
chr1	159175575	.	T	.	.	PASS	END=159175640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:346:99:60
chr1	159175641	.	G	.	.	PASS	END=159175785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:284:99:60
chr1	159175786	.	T	.	.	PASS	END=159175868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:264:99:60
chr1	159175869	.	T	.	.	PASS	END=159175945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	159175946	.	A	.	.	PASS	END=159175965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	159175966	.	T	.	.	PASS	END=159176011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	159176012	.	A	.	.	PASS	END=159176128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	159176129	.	G	.	.	PASS	END=159176219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	159176220	.	A	.	.	PASS	END=159176242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	159272133	.	G	.	.	PASS	END=159272232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	159272605	.	A	.	.	PASS	END=159272617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	159272618	.	A	.	.	PASS	END=159272704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	159273716	.	A	.	.	PASS	END=159273738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	159273739	.	C	.	.	PASS	END=159273827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	159273828	.	A	.	.	PASS	END=159273900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	159273901	.	A	.	.	PASS	END=159273957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	159273958	.	T	.	.	PASS	END=159273974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	159275776	.	A	.	.	PASS	END=159275807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	159275808	.	T	.	.	PASS	END=159275888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	159275889	.	A	.	.	PASS	END=159276015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	159276016	.	C	.	.	PASS	END=159276037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	159277536	.	A	.	.	PASS	END=159277552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	159277553	.	A	.	.	PASS	END=159277700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	159277701	.	G	.	.	PASS	END=159277718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	159277719	.	C	.	.	PASS	END=159277724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	159283458	.	A	.	.	LowGQX	END=159283633	GT	./.
chr1	159283634	.	G	.	.	LowGQX	END=159283641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283642	.	C	.	.	LowGQX	.	GT	./.
chr1	159283643	.	C	.	.	LowGQX	END=159283644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283645	.	G	.	.	LowGQX	.	GT	./.
chr1	159283646	.	G	.	.	LowGQX	END=159283666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283667	.	C	.	.	LowGQX	.	GT	./.
chr1	159283668	.	A	.	.	LowGQX	END=159283680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283681	.	A	.	.	LowGQX	.	GT	./.
chr1	159283682	.	G	.	.	LowGQX	END=159283684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283685	.	A	.	.	LowGQX	.	GT	./.
chr1	159283686	.	C	.	.	LowGQX	END=159283700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283701	.	A	.	.	LowGQX	.	GT	./.
chr1	159283702	.	T	.	.	LowGQX	END=159283703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283704	.	A	.	.	LowGQX	.	GT	./.
chr1	159283705	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283706	.	C	.	.	LowGQX	.	GT	./.
chr1	159283707	.	A	.	.	LowGQX	END=159283708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283709	.	T	.	.	LowGQX	.	GT	./.
chr1	159283710	.	G	.	.	LowGQX	END=159283711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283712	.	G	.	.	LowGQX	.	GT	./.
chr1	159283713	.	A	.	.	LowGQX	END=159283716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283717	.	G	.	.	LowGQX	.	GT	./.
chr1	159283718	.	G	.	.	LowGQX	END=159283719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283720	.	A	.	.	LowGQX	.	GT	./.
chr1	159283721	.	G	.	.	LowGQX	END=159283724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283725	.	C	.	.	LowGQX	END=159283726	GT	./.
chr1	159283727	.	G	.	.	LowGQX	END=159283729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283730	.	G	.	.	LowGQX	END=159283732	GT	./.
chr1	159283733	.	A	.	.	LowGQX	END=159283734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283735	.	A	.	.	LowGQX	.	GT	./.
chr1	159283736	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283737	.	G	.	.	LowGQX	END=159283739	GT	./.
chr1	159283740	.	T	.	.	LowGQX	END=159283742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283743	.	T	.	.	LowGQX	.	GT	./.
chr1	159283744	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283745	.	C	.	.	LowGQX	.	GT	./.
chr1	159283746	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283747	.	G	.	.	LowGQX	.	GT	./.
chr1	159283748	.	A	.	.	LowGQX	END=159283749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283750	.	C	.	.	LowGQX	.	GT	./.
chr1	159283751	.	T	.	.	LowGQX	END=159283758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283759	.	A	.	.	LowGQX	.	GT	./.
chr1	159283760	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283761	.	G	.	.	LowGQX	END=159283763	GT	./.
chr1	159283764	.	A	.	.	LowGQX	END=159283769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283770	.	A	.	.	LowGQX	END=159283772	GT	./.
chr1	159283773	.	A	.	.	LowGQX	END=159283774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283775	.	G	.	.	LowGQX	.	GT	./.
chr1	159283776	.	G	.	.	LowGQX	END=159283778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283779	.	G	.	.	LowGQX	END=159283780	GT	./.
chr1	159283781	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283782	.	A	.	.	LowGQX	END=159283913	GT	./.
chr1	159283914	.	A	.	.	LowGQX	END=159283915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283916	.	G	.	.	LowGQX	.	GT	./.
chr1	159283917	.	A	.	.	LowGQX	END=159283926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283927	.	T	.	.	LowGQX	.	GT	./.
chr1	159283928	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283929	.	A	.	.	LowGQX	.	GT	./.
chr1	159283930	.	C	.	.	LowGQX	END=159283933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283934	.	G	.	.	LowGQX	.	GT	./.
chr1	159283935	.	G	.	.	LowGQX	END=159283937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283938	.	T	.	.	LowGQX	.	GT	./.
chr1	159283939	.	C	.	.	LowGQX	END=159283948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283949	.	C	.	.	LowGQX	END=159283950	GT	./.
chr1	159283951	.	G	.	.	LowGQX	END=159283956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283957	.	A	.	.	LowGQX	.	GT	./.
chr1	159283958	.	C	.	.	LowGQX	END=159283960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283961	.	A	.	.	LowGQX	.	GT	./.
chr1	159283962	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283963	.	A	.	.	LowGQX	END=159283964	GT	./.
chr1	159283965	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283966	.	T	.	.	LowGQX	.	GT	./.
chr1	159283967	.	T	.	.	LowGQX	END=159283970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283971	.	T	.	.	LowGQX	END=159283972	GT	./.
chr1	159283973	.	G	.	.	LowGQX	END=159283974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283975	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	159283976	.	A	.	.	LowGQX	END=159283977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283978	.	T	.	.	LowGQX	END=159283979	GT	./.
chr1	159283980	.	G	.	.	LowGQX	END=159283983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283984	.	T	.	.	LowGQX	END=159283985	GT	./.
chr1	159283986	.	C	.	.	LowGQX	END=159283988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283989	.	A	.	.	LowGQX	.	GT	./.
chr1	159283990	.	G	.	.	LowGQX	END=159283991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283992	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	159283993	.	C	.	.	LowGQX	END=159283996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159283997	.	C	.	.	LowGQX	.	GT	./.
chr1	159283998	.	C	.	.	LowGQX	END=159284003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284004	.	G	.	.	LowGQX	END=159284006	GT	./.
chr1	159284007	.	C	.	.	LowGQX	END=159284018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284019	.	T	.	.	LowGQX	.	GT	./.
chr1	159284020	.	G	.	.	LowGQX	END=159284030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284031	.	C	.	.	LowGQX	.	GT	./.
chr1	159284032	.	T	.	.	LowGQX	END=159284062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284063	.	G	.	.	LowGQX	END=159284233	GT	./.
chr1	159284234	.	G	.	.	LowGQX	END=159284235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284236	.	T	.	.	LowGQX	.	GT	./.
chr1	159284237	.	C	.	.	LowGQX	END=159284252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284253	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	159284254	.	T	.	.	LowGQX	END=159284260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284261	.	G	.	.	LowGQX	END=159284263	GT	./.
chr1	159284264	.	G	.	.	LowGQX	END=159284277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284278	.	T	.	.	LowGQX	.	GT	./.
chr1	159284279	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284280	.	T	.	.	LowGQX	.	GT	./.
chr1	159284281	.	G	.	.	LowGQX	END=159284285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284286	.	T	.	.	LowGQX	.	GT	./.
chr1	159284287	.	G	.	.	LowGQX	END=159284290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284291	.	G	.	.	LowGQX	.	GT	./.
chr1	159284292	.	T	.	.	LowGQX	END=159284294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284295	.	A	.	.	LowGQX	.	GT	./.
chr1	159284296	.	G	.	.	LowGQX	END=159284300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284301	.	A	.	.	LowGQX	.	GT	./.
chr1	159284302	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284303	.	A	.	.	LowGQX	.	GT	./.
chr1	159284304	.	A	.	.	LowGQX	END=159284320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284321	.	A	.	.	LowGQX	.	GT	./.
chr1	159284322	.	T	.	.	LowGQX	END=159284326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284327	.	A	.	.	LowGQX	.	GT	./.
chr1	159284328	.	G	.	.	LowGQX	END=159284332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284333	.	A	.	.	LowGQX	.	GT	./.
chr1	159284334	.	G	.	.	LowGQX	END=159284336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284337	.	A	.	.	LowGQX	.	GT	./.
chr1	159284338	.	G	.	.	LowGQX	END=159284346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284347	.	A	.	.	LowGQX	.	GT	./.
chr1	159284348	.	A	.	.	LowGQX	END=159284356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284357	.	G	.	.	LowGQX	.	GT	./.
chr1	159284358	.	A	.	.	LowGQX	END=159284359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284360	.	A	.	.	LowGQX	END=159284362	GT	./.
chr1	159284363	.	A	.	.	LowGQX	END=159284377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284378	.	G	.	.	LowGQX	.	GT	./.
chr1	159284379	.	T	.	.	LowGQX	END=159284383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284384	.	C	.	.	LowGQX	END=159284416	GT	./.
chr1	159284417	.	C	.	.	LowGQX	END=159284424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284425	.	C	.	.	LowGQX	.	GT	./.
chr1	159284426	.	A	.	.	LowGQX	END=159284427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284428	.	A	.	.	LowGQX	.	GT	./.
chr1	159284429	.	A	.	.	LowGQX	END=159284430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284431	.	T	.	.	LowGQX	END=159284433	GT	./.
chr1	159284434	.	A	.	.	LowGQX	END=159284436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284437	.	T	.	.	LowGQX	.	GT	./.
chr1	159284438	.	T	.	.	LowGQX	END=159284441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284442	.	T	.	.	LowGQX	.	GT	./.
chr1	159284443	.	T	.	.	LowGQX	END=159284450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159284451	.	A	.	.	LowGQX	.	GT	./.
chr1	159409547	.	T	.	.	LowGQX	END=159410513	GT	./.
chr1	159504866	.	C	.	.	LowGQX	END=159505799	GT	./.
chr1	159557694	.	C	.	.	LowGQX	END=159557725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159557726	.	G	.	.	LowGQX	.	GT	./.
chr1	159557727	.	C	.	.	LowGQX	END=159557733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159557734	.	T	.	.	LowGQX	END=159557744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	159557745	.	A	.	.	LowGQX	END=159557772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	159557773	.	C	.	.	LowGQX	END=159557793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	159557889	.	A	.	.	LowGQX	END=159557958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159557959	.	C	.	.	LowGQX	.	GT	./.
chr1	159557960	.	T	.	.	LowGQX	END=159558028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159558029	.	T	.	.	LowGQX	END=159558096	GT	./.
chr1	159558097	.	A	.	.	LowGQX	END=159558257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159558258	.	A	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	159558259	.	G	.	.	LowGQX	END=159558355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159558356	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	159558357	.	C	.	.	LowGQX	END=159558418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159558419	.	C	.	.	LowGQX	END=159558500	GT	./.
chr1	159683313	.	C	.	.	PASS	END=159683385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	159683386	.	C	.	.	PASS	END=159683437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	159683438	.	C	G	2725.24	PASS	BaseQRankSum=1.957;DP=90;Dels=0.00;FS=4.420;HRun=0;HaplotypeScore=2.8930;MQ=60;MQ0=0;MQRankSum=-0.698;QD=30.28;ReadPosRankSum=1.492;SB=-1041.60	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,88:90:99:2758,181,0:60:99:0.978
chr1	159683439	.	A	.	.	PASS	END=159683564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	159683565	.	C	.	.	PASS	END=159683729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	159683730	.	T	.	.	PASS	END=159683792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	159683793	.	C	.	.	PASS	END=159683883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	159683884	.	A	.	.	PASS	END=159683930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	159684196	.	A	.	.	PASS	END=159684232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	159684233	.	G	.	.	PASS	END=159684295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	159750878	.	C	.	.	PASS	END=159750903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	159750904	.	C	.	.	PASS	END=159750973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	159750974	.	C	.	.	PASS	END=159751048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	159751049	.	C	.	.	PASS	END=159751159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	159751941	.	A	.	.	PASS	END=159752019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	159752020	.	C	.	.	PASS	END=159752070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	159752071	.	C	.	.	PASS	END=159752130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr1	159770346	.	A	.	.	LowGQX	END=159770445	GT	./.
chr1	159772179	.	G	.	.	LowGQX	END=159772278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	159776347	.	T	.	.	LowGQX	END=159776446	GT	./.
chr1	159777966	.	A	.	.	LowGQX	END=159778021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:56
chr1	159778022	.	C	A	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=57;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=-0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:57:5:0.333
chr1	159778023	.	T	.	.	LowGQX	END=159778237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:56
chr1	159778238	.	A	.	.	LowGQX	END=159778305	GT	./.
chr1	159778749	.	A	.	.	LowGQX	END=159778756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159778757	.	T	.	.	LowGQX	.	GT	./.
chr1	159778758	.	T	.	.	LowGQX	END=159778767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159778768	.	G	.	.	LowGQX	.	GT	./.
chr1	159778769	.	T	.	.	LowGQX	END=159778771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159778772	.	T	.	.	LowGQX	.	GT	./.
chr1	159778773	.	G	.	.	LowGQX	END=159778774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159778775	.	G	.	.	LowGQX	.	GT	./.
chr1	159778776	.	T	.	.	LowGQX	END=159778780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159778781	.	T	.	.	LowGQX	.	GT	./.
chr1	159778782	.	C	.	.	LowGQX	END=159778783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159778784	.	C	.	.	LowGQX	.	GT	./.
chr1	159778785	.	C	.	.	LowGQX	END=159778813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159778814	.	T	.	.	LowGQX	.	GT	./.
chr1	159778815	.	G	.	.	LowGQX	END=159778865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159778866	.	C	.	.	LowGQX	END=159778899	GT	./.
chr1	159778900	.	C	.	.	LowGQX	END=159778922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159778923	.	A	.	.	LowGQX	.	GT	./.
chr1	159778924	.	C	.	.	LowGQX	END=159778942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159778943	.	A	.	.	LowGQX	.	GT	./.
chr1	159778944	.	G	.	.	LowGQX	END=159778953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159778954	.	T	.	.	LowGQX	.	GT	./.
chr1	159778955	.	C	.	.	LowGQX	END=159778985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159778986	.	G	.	.	LowGQX	.	GT	./.
chr1	159778987	.	G	.	.	LowGQX	END=159778992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159778993	.	C	.	.	LowGQX	.	GT	./.
chr1	159778994	.	A	.	.	LowGQX	END=159779037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159779190	.	A	.	.	LowGQX	END=159779256	GT	./.
chr1	159779257	.	G	.	.	LowGQX	END=159779343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159779344	.	G	.	.	LowGQX	.	GT	./.
chr1	159779345	.	C	.	.	LowGQX	END=159779358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159779359	.	A	.	.	LowGQX	.	GT	./.
chr1	159779360	.	C	.	.	LowGQX	END=159779447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159779448	.	T	.	.	LowGQX	.	GT	./.
chr1	159779449	.	G	.	.	LowGQX	END=159779475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159779882	.	A	.	.	LowGQX	END=159780008	GT	./.
chr1	159783262	.	G	.	.	LowGQX	END=159783361	GT	./.
chr1	159783997	.	A	.	.	LowGQX	END=159784096	GT	./.
chr1	159785184	.	A	.	.	LowGQX	END=159785283	GT	./.
chr1	159785324	.	A	.	.	LowGQX	END=159785453	GT	./.
chr1	159796607	.	C	.	.	LowGQX	END=159796758	GT	./.
chr1	159799654	.	A	.	.	LowGQX	END=159799855	GT	./.
chr1	159799856	.	C	.	.	LowGQX	END=159799902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159799903	.	A	.	.	LowGQX	.	GT	./.
chr1	159799904	.	G	.	.	LowGQX	END=159799954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159799955	.	A	.	.	LowGQX	.	GT	./.
chr1	159799956	.	C	.	.	LowGQX	END=159799984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159802664	.	A	.	.	LowGQX	END=159802820	GT	./.
chr1	159802821	.	G	.	.	LowGQX	END=159802878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159802879	.	A	.	.	LowGQX	END=159802973	GT	./.
chr1	159803050	.	A	.	.	LowGQX	END=159803161	GT	./.
chr1	159804963	.	G	.	.	LowGQX	END=159805062	GT	./.
chr1	159807707	.	C	.	.	LowGQX	END=159807817	GT	./.
chr1	159810500	.	C	.	.	LowGQX	END=159810545	GT	./.
chr1	159810546	.	T	.	.	LowGQX	END=159810598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159810599	.	A	.	.	LowGQX	.	GT	./.
chr1	159810600	.	G	.	.	LowGQX	END=159810628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159810629	.	G	.	.	LowGQX	.	GT	./.
chr1	159810630	.	G	.	.	LowGQX	END=159810632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159810633	.	C	.	.	LowGQX	.	GT	./.
chr1	159810634	.	A	.	.	LowGQX	END=159810656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159810915	.	C	.	.	LowGQX	END=159810927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159810928	.	T	.	.	LowGQX	.	GT	./.
chr1	159810929	.	C	.	.	LowGQX	END=159810997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159810998	.	A	.	.	LowGQX	END=159811025	GT	./.
chr1	159824530	.	C	.	.	LowGQX	END=159824819	GT	./.
chr1	159824947	.	T	.	.	LowGQX	END=159825046	GT	./.
chr1	159825671	.	A	.	.	LowGQX	END=159825711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	159825712	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	159825713	.	C	.	.	LowGQX	END=159825824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159825825	.	C	.	.	LowGQX	.	GT	./.
chr1	159825826	.	A	.	.	LowGQX	END=159825833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159825834	.	C	.	.	LowGQX	.	GT	./.
chr1	159825835	.	A	.	.	LowGQX	END=159825839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159825840	.	G	.	.	LowGQX	END=159825873	GT	./.
chr1	159826312	.	A	.	.	LowGQX	END=159826353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159826354	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	159826355	.	T	.	.	LowGQX	END=159826435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159827533	.	A	.	.	LowGQX	END=159827589	GT	./.
chr1	159827590	.	G	.	.	LowGQX	END=159827594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159827595	.	G	.	.	LowGQX	.	GT	./.
chr1	159827596	.	G	.	.	LowGQX	END=159827641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159827642	.	T	.	.	LowGQX	.	GT	./.
chr1	159827643	.	T	.	.	LowGQX	END=159827653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159827654	.	T	.	.	LowGQX	.	GT	./.
chr1	159827655	.	A	.	.	LowGQX	END=159827673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159827674	.	C	.	.	LowGQX	.	GT	./.
chr1	159827675	.	C	.	.	LowGQX	END=159827676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159827677	.	A	.	.	LowGQX	.	GT	./.
chr1	159827678	.	C	.	.	LowGQX	END=159827687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159827688	.	A	.	.	LowGQX	.	GT	./.
chr1	159827689	.	C	.	.	LowGQX	END=159827702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159827703	.	C	.	.	LowGQX	.	GT	./.
chr1	159827704	.	G	.	.	LowGQX	END=159827707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159827708	.	C	.	.	LowGQX	.	GT	./.
chr1	159827709	.	C	.	.	LowGQX	END=159827710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159827711	.	T	.	.	LowGQX	.	GT	./.
chr1	159827712	.	A	.	.	LowGQX	END=159827713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159827714	.	G	.	.	LowGQX	.	GT	./.
chr1	159827715	.	T	.	.	LowGQX	END=159827720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159827721	.	G	.	.	LowGQX	.	GT	./.
chr1	159827722	.	G	.	.	LowGQX	END=159827727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159827728	.	T	.	.	LowGQX	.	GT	./.
chr1	159827729	.	G	.	.	LowGQX	END=159827731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159827732	.	C	.	.	LowGQX	END=159827733	GT	./.
chr1	159827734	.	G	.	.	LowGQX	END=159827736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159827737	.	C	.	.	LowGQX	.	GT	./.
chr1	159827738	.	A	.	.	LowGQX	END=159827758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159827878	.	A	.	.	LowGQX	END=159827906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159827907	.	T	.	.	LowGQX	.	GT	./.
chr1	159827908	.	G	.	.	LowGQX	END=159827992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159827993	.	T	.	.	LowGQX	END=159828083	GT	./.
chr1	159828522	.	A	.	.	LowGQX	END=159828637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159828638	.	A	.	.	LowGQX	.	GT	./.
chr1	159828639	.	T	.	.	LowGQX	END=159828688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159828689	.	A	.	.	LowGQX	END=159828699	GT	./.
chr1	159828700	.	G	.	.	LowGQX	END=159828704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159832238	.	C	.	.	LowGQX	END=159832297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159832298	.	C	.	.	LowGQX	.	GT	./.
chr1	159832299	.	C	.	.	LowGQX	END=159832303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159832304	.	A	.	.	LowGQX	.	GT	./.
chr1	159832305	.	C	.	.	LowGQX	END=159832318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159832319	.	G	.	.	LowGQX	.	GT	./.
chr1	159832320	.	G	.	.	LowGQX	END=159832327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159832328	.	T	.	.	LowGQX	.	GT	./.
chr1	159832329	.	T	.	.	LowGQX	END=159832333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159832334	.	C	.	.	LowGQX	.	GT	./.
chr1	159832335	.	C	.	.	LowGQX	END=159832337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159842265	.	A	.	.	LowGQX	END=159842364	GT	./.
chr1	159842732	.	A	.	.	LowGQX	END=159842960	GT	./.
chr1	159846344	.	A	.	.	LowGQX	END=159846579	GT	./.
chr1	159847137	.	A	.	.	LowGQX	END=159847254	GT	./.
chr1	159850342	.	A	.	.	LowGQX	END=159850492	GT	./.
chr1	159854224	.	A	.	.	LowGQX	END=159854357	GT	./.
chr1	159856299	.	A	.	.	LowGQX	END=159856302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159856303	.	A	.	.	LowGQX	END=159856304	GT	./.
chr1	159856305	.	T	.	.	LowGQX	END=159856308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159856309	.	T	.	.	LowGQX	END=159856310	GT	./.
chr1	159856311	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159856312	.	C	.	.	LowGQX	.	GT	./.
chr1	159856313	.	T	.	.	LowGQX	END=159856321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159856322	.	T	.	.	LowGQX	.	GT	./.
chr1	159856323	.	T	.	.	LowGQX	END=159856332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159856333	.	T	.	.	LowGQX	END=159856334	GT	./.
chr1	159856335	.	C	.	.	LowGQX	END=159856338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159856339	.	C	.	.	LowGQX	.	GT	./.
chr1	159856340	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159856341	.	G	.	.	LowGQX	.	GT	./.
chr1	159856342	.	C	.	.	LowGQX	END=159856348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159856349	.	A	.	.	LowGQX	.	GT	./.
chr1	159856350	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159856351	.	G	.	.	LowGQX	.	GT	./.
chr1	159856352	.	G	.	.	LowGQX	END=159856363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159856364	.	T	.	.	LowGQX	.	GT	./.
chr1	159856365	.	C	.	.	LowGQX	END=159856366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159856367	.	A	.	.	LowGQX	.	GT	./.
chr1	159856368	.	C	.	.	LowGQX	END=159856380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159856381	.	A	.	.	LowGQX	.	GT	./.
chr1	159856382	.	T	.	.	LowGQX	END=159856419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159856420	.	C	.	.	LowGQX	.	GT	./.
chr1	159856421	.	T	.	.	LowGQX	END=159856425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159856426	.	C	.	.	LowGQX	.	GT	./.
chr1	159856427	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159856428	.	T	.	.	LowGQX	.	GT	./.
chr1	159856429	.	C	.	.	LowGQX	END=159856434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159856435	.	G	.	.	LowGQX	END=159856481	GT	./.
chr1	159857629	.	A	.	.	LowGQX	END=159857803	GT	./.
chr1	159858140	.	A	.	.	LowGQX	END=159858288	GT	./.
chr1	159860268	.	A	.	.	LowGQX	END=159860354	GT	./.
chr1	159860355	.	G	.	.	LowGQX	END=159860375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159860376	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	159860377	.	C	.	.	LowGQX	END=159860414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159862968	.	A	.	.	LowGQX	END=159863097	GT	./.
chr1	159869838	.	C	.	.	LowGQX	END=159869937	GT	./.
chr1	159888588	.	G	.	.	LowGQX	END=159888733	GT	./.
chr1	159889062	.	A	.	.	LowGQX	END=159889168	GT	./.
chr1	159889449	.	A	.	.	LowGQX	END=159889617	GT	./.
chr1	159889618	.	C	.	.	LowGQX	END=159889627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159889895	.	T	.	.	LowGQX	END=159890052	GT	./.
chr1	159890053	.	A	.	.	LowGQX	END=159890129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159890130	.	T	.	.	LowGQX	END=159890251	GT	./.
chr1	159890252	.	C	.	.	LowGQX	END=159890257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159890258	.	C	.	.	LowGQX	.	GT	./.
chr1	159890259	.	A	.	.	LowGQX	END=159890261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159890262	.	T	.	.	LowGQX	.	GT	./.
chr1	159890263	.	C	.	.	LowGQX	END=159890273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159890274	.	C	.	.	LowGQX	.	GT	./.
chr1	159890275	.	C	.	.	LowGQX	END=159890276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159890277	.	T	.	.	LowGQX	.	GT	./.
chr1	159890278	.	A	.	.	LowGQX	END=159890280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159890281	.	C	.	.	LowGQX	END=159890282	GT	./.
chr1	159890283	.	G	.	.	LowGQX	END=159890288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159890289	.	C	.	.	LowGQX	.	GT	./.
chr1	159890290	.	T	.	.	LowGQX	END=159890291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159890292	.	T	.	.	LowGQX	END=159890293	GT	./.
chr1	159890294	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159890295	.	G	.	.	LowGQX	.	GT	./.
chr1	159890296	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159890297	.	C	.	.	LowGQX	END=159890298	GT	./.
chr1	159890299	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159890300	.	T	.	.	LowGQX	END=159890303	GT	./.
chr1	159890304	.	A	.	.	LowGQX	END=159890308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159890309	.	T	.	.	LowGQX	.	GT	./.
chr1	159890310	.	G	.	.	LowGQX	END=159890312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159890313	.	G	.	.	LowGQX	.	GT	./.
chr1	159890314	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159890315	.	T	.	.	LowGQX	END=159890317	GT	./.
chr1	159890318	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159890319	.	T	.	.	LowGQX	.	GT	./.
chr1	159890320	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159890321	.	C	.	.	LowGQX	.	GT	./.
chr1	159890322	.	G	.	.	LowGQX	END=159890323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159890324	.	G	.	.	LowGQX	.	GT	./.
chr1	159890325	.	G	.	.	LowGQX	END=159890327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159893193	.	C	.	.	LowGQX	END=159893292	GT	./.
chr1	159897113	.	C	.	.	LowGQX	END=159897134	GT	./.
chr1	159897135	.	T	.	.	LowGQX	END=159897288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159897289	.	A	.	.	LowGQX	END=159897318	GT	./.
chr1	159897548	.	A	.	.	LowGQX	END=159897679	GT	./.
chr1	159897946	.	A	.	.	LowGQX	END=159897959	GT	./.
chr1	159897960	.	G	.	.	LowGQX	END=159898079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159898080	.	A	.	.	LowGQX	.	GT	./.
chr1	159898081	.	A	.	.	LowGQX	END=159898099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159898100	.	A	G	14.91	LowGQ;LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=4.97;ReadPosRankSum=-0.736;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,2:3:3.01:45,3,0:60:3:0.667
chr1	159898101	.	C	.	.	LowGQX	END=159898142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159898143	.	A	.	.	LowGQX	.	GT	./.
chr1	159898144	.	G	.	.	LowGQX	END=159898160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159898161	.	T	.	.	LowGQX	.	GT	./.
chr1	159898162	.	C	.	.	LowGQX	END=159898170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159898171	.	T	.	.	LowGQX	.	GT	./.
chr1	159898172	.	C	.	.	LowGQX	END=159898175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159898176	.	T	.	.	LowGQX	.	GT	./.
chr1	159898177	.	C	.	.	LowGQX	END=159898223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159898224	.	A	.	.	LowGQX	.	GT	./.
chr1	159898225	.	C	.	.	LowGQX	END=159898235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159898236	.	A	.	.	LowGQX	END=159898281	GT	./.
chr1	159898282	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159898283	.	A	.	.	LowGQX	.	GT	./.
chr1	159898284	.	G	.	.	LowGQX	END=159898285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159898286	.	T	.	.	LowGQX	.	GT	./.
chr1	159898287	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159898288	.	A	.	.	LowGQX	.	GT	./.
chr1	159898289	.	G	.	.	LowGQX	END=159898290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159898291	.	T	.	.	LowGQX	.	GT	./.
chr1	159898292	.	G	.	.	LowGQX	END=159898296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159898297	.	A	.	.	LowGQX	.	GT	./.
chr1	159898298	.	G	.	.	LowGQX	END=159898324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159898325	.	T	.	.	LowGQX	.	GT	./.
chr1	159898326	.	G	.	.	LowGQX	END=159898340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159898341	.	T	.	.	LowGQX	.	GT	./.
chr1	159898342	.	C	.	.	LowGQX	END=159898358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159898359	.	T	.	.	LowGQX	.	GT	./.
chr1	159898360	.	C	.	.	LowGQX	END=159898414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159898415	.	T	.	.	LowGQX	.	GT	./.
chr1	159898416	.	C	.	.	LowGQX	END=159898432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159898433	.	A	.	.	LowGQX	END=159898540	GT	./.
chr1	159898541	.	A	.	.	LowGQX	END=159898585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159898586	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr1	159898587	.	T	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	159898588	.	C	.	.	LowGQX	END=159898603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	159898604	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	159898605	.	G	.	.	LowGQX	END=159898620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	159898621	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	159898622	.	G	.	.	LowGQX	END=159898623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	159898624	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	159898625	.	C	.	.	LowGQX	END=159898695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	159898696	.	T	.	33	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:60:3
chr1	159898697	.	G	.	.	LowGQX	END=159898787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	159898788	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159898789	.	T	.	.	LowGQX	END=159898810	GT	./.
chr1	159899053	.	C	.	.	LowGQX	END=159899106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159899107	.	G	.	.	LowGQX	.	GT	./.
chr1	159899108	.	G	.	.	LowGQX	END=159899125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159899126	.	G	.	.	LowGQX	.	GT	./.
chr1	159899127	.	G	.	.	LowGQX	END=159899154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159899155	.	C	.	.	LowGQX	.	GT	./.
chr1	159899156	.	C	.	.	LowGQX	END=159899209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159899210	.	A	.	.	LowGQX	END=159899212	GT	./.
chr1	159899426	.	A	.	.	LowGQX	END=159899427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159899428	.	C	.	.	LowGQX	.	GT	./.
chr1	159899429	.	T	.	.	LowGQX	END=159899430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159899431	.	G	.	.	LowGQX	.	GT	./.
chr1	159899432	.	G	.	.	LowGQX	END=159899433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159899434	.	G	.	.	LowGQX	.	GT	./.
chr1	159899435	.	G	.	.	LowGQX	END=159899438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159899439	.	C	.	.	LowGQX	.	GT	./.
chr1	159899440	.	G	.	.	LowGQX	END=159899457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159899458	.	C	.	.	LowGQX	.	GT	./.
chr1	159899459	.	A	.	.	LowGQX	END=159899462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159899463	.	C	.	.	LowGQX	.	GT	./.
chr1	159899464	.	T	.	.	LowGQX	END=159899465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159899466	.	C	.	.	LowGQX	.	GT	./.
chr1	159899467	.	G	.	.	LowGQX	END=159899471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159899472	.	T	.	.	LowGQX	END=159899473	GT	./.
chr1	159899474	.	C	.	.	LowGQX	END=159899492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159899493	.	A	.	.	LowGQX	END=159899494	GT	./.
chr1	159899495	.	G	.	.	LowGQX	END=159899497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159899498	.	C	.	.	LowGQX	.	GT	./.
chr1	159899499	.	A	.	.	LowGQX	END=159899529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159899530	.	C	.	.	LowGQX	END=159899606	GT	./.
chr1	159899674	.	T	.	.	LowGQX	END=159899773	GT	./.
chr1	159899977	.	A	.	.	LowGQX	END=159900231	GT	./.
chr1	159900460	.	T	.	.	LowGQX	END=159900659	GT	./.
chr1	159900926	.	A	.	.	LowGQX	END=159900942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159900943	.	A	.	.	LowGQX	END=159901053	GT	./.
chr1	159901241	.	A	.	.	LowGQX	END=159901246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	159901247	.	C	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	159901248	.	A	.	.	LowGQX	END=159901310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159901311	.	C	.	.	LowGQX	.	GT	./.
chr1	159901312	.	C	.	.	LowGQX	END=159901321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159901322	.	C	.	.	LowGQX	.	GT	./.
chr1	159901323	.	T	.	.	LowGQX	END=159901324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159901325	.	G	.	.	LowGQX	.	GT	./.
chr1	159901326	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159901327	.	T	.	.	LowGQX	END=159901328	GT	./.
chr1	159901329	.	A	.	.	LowGQX	END=159901337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159901338	.	A	.	.	LowGQX	.	GT	./.
chr1	159901339	.	G	.	.	LowGQX	END=159901346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159901347	.	C	.	.	LowGQX	END=159901349	GT	./.
chr1	159901350	.	C	.	.	LowGQX	END=159901360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159901361	.	C	.	.	LowGQX	END=159901362	GT	./.
chr1	159901363	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159901364	.	C	.	.	LowGQX	.	GT	./.
chr1	159901365	.	T	.	.	LowGQX	END=159901366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159901367	.	G	.	.	LowGQX	END=159901368	GT	./.
chr1	159901369	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159901370	.	C	.	.	LowGQX	.	GT	./.
chr1	159901371	.	T	.	.	LowGQX	END=159901375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159901376	.	T	.	.	LowGQX	END=159901395	GT	./.
chr1	159901600	.	A	.	.	LowGQX	END=159901769	GT	./.
chr1	159902260	.	G	.	.	LowGQX	END=159902265	GT	./.
chr1	159902266	.	C	.	.	LowGQX	END=159902267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:56
chr1	159902268	.	G	.	.	LowGQX	.	GT	./.
chr1	159902269	.	T	.	.	LowGQX	END=159902276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:56
chr1	159902277	.	G	.	33	LowGQX	DP=2;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:56:3
chr1	159902278	.	G	.	.	LowGQX	END=159902283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:56
chr1	159902284	.	G	.	.	LowGQX	.	GT	./.
chr1	159902285	.	C	.	.	LowGQX	END=159902288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:56
chr1	159902289	.	C	.	.	LowGQX	END=159902291	GT	./.
chr1	159902292	.	C	.	.	LowGQX	END=159902295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:56
chr1	159902296	.	C	.	33	LowGQX	DP=2;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:56:3
chr1	159902297	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:56
chr1	159902298	.	T	.	33	LowGQX	DP=2;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:56:3
chr1	159902299	.	A	.	.	LowGQX	END=159902302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:56
chr1	159902303	.	T	.	33	LowGQX	DP=2;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:56:3
chr1	159902304	.	T	.	.	LowGQX	END=159902313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:56
chr1	159902314	.	G	.	33	LowGQX	DP=2;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:56:3
chr1	159902315	.	C	.	.	LowGQX	END=159902322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:56
chr1	159902323	.	A	.	.	LowGQX	.	GT	./.
chr1	159902324	.	G	.	.	LowGQX	END=159902327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159902328	.	A	.	.	LowGQX	END=159902329	GT	./.
chr1	159902330	.	G	.	.	LowGQX	END=159902337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159902338	.	G	.	.	LowGQX	END=159902444	GT	./.
chr1	159903937	.	A	.	.	LowGQX	END=159904097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159904098	.	G	.	.	LowGQX	END=159904103	GT	./.
chr1	159904104	.	G	.	.	LowGQX	END=159904122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159904213	.	A	.	.	LowGQX	END=159904362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159904469	.	A	.	.	LowGQX	END=159904572	GT	./.
chr1	159904573	.	A	.	.	LowGQX	END=159904581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159904582	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	159904583	.	T	.	.	LowGQX	END=159904584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159904585	.	T	.	.	LowGQX	.	GT	./.
chr1	159904586	.	T	.	.	LowGQX	END=159904599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159904600	.	A	.	.	LowGQX	END=159904601	GT	./.
chr1	159904602	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159904603	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	159904604	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159904605	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	159904606	.	G	.	.	LowGQX	END=159904610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159904611	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	159904612	.	C	.	.	LowGQX	END=159904614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159906145	.	T	.	.	LowGQX	END=159906274	GT	./.
chr1	159906275	.	A	.	.	LowGQX	END=159906308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	159906542	.	A	.	.	LowGQX	END=159906700	GT	./.
chr1	159907474	.	A	.	.	LowGQX	END=159907630	GT	./.
chr1	159912741	.	G	.	.	LowGQX	END=159912943	GT	./.
chr1	159913166	.	G	.	.	LowGQX	END=159913265	GT	./.
chr1	159921449	.	A	.	.	LowGQX	END=159921658	GT	./.
chr1	159922050	.	A	.	.	LowGQX	END=159922326	GT	./.
chr1	159923097	.	A	.	.	LowGQX	END=159923445	GT	./.
chr1	159923855	.	T	.	.	LowGQX	END=159923922	GT	./.
chr1	159923923	.	C	.	.	LowGQX	END=159923927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159923928	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	159923929	.	T	.	.	LowGQX	END=159923935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159923936	.	C	.	.	LowGQX	.	GT	./.
chr1	159923937	.	C	.	.	LowGQX	END=159923940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159923941	.	A	.	.	LowGQX	END=159923942	GT	./.
chr1	159923943	.	C	.	.	LowGQX	END=159923947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	159923948	.	G	.	.	LowGQX	.	GT	./.
chr1	159923949	.	A	.	.	LowGQX	END=159923954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160000207	.	C	.	.	LowGQX	END=160000213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160000214	.	G	.	.	LowGQX	.	GT	./.
chr1	160000215	.	A	.	.	LowGQX	END=160000223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160000224	.	A	.	.	LowGQX	END=160000229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	160000230	.	C	.	.	LowGQX	END=160000231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	160000232	.	C	.	.	LowGQX	END=160000234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	160000235	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	160000236	.	A	.	.	LowGQX	END=160000243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	160000244	.	G	.	.	PASS	END=160000245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	160000246	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	160000247	.	T	.	.	PASS	END=160000248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	160000249	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	160000250	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	160000251	.	A	.	.	PASS	END=160000277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	160000278	.	C	.	.	PASS	END=160000289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	160000290	.	C	.	.	PASS	END=160000295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	160000296	.	T	.	.	PASS	END=160000308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	160000309	.	A	.	.	PASS	END=160000310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	160000311	.	T	.	.	PASS	END=160000315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	160000316	.	A	.	.	PASS	END=160000321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	160000322	.	A	.	.	PASS	END=160000328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	160000329	.	A	.	.	PASS	END=160000343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	160000344	.	A	.	.	PASS	END=160000366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	160000367	.	A	.	.	PASS	END=160000375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	160000376	.	G	.	.	PASS	END=160000394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	160000395	.	C	.	.	PASS	END=160000417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	160000418	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:27:60
chr1	160000419	.	A	.	.	PASS	END=160000430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	160000431	.	C	.	.	PASS	END=160000468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	160000469	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:60:60
chr1	160000470	.	A	.	.	PASS	END=160000481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	160000482	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:75:60
chr1	160000483	.	T	.	.	PASS	END=160000614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:80:60
chr1	160000615	.	C	.	.	PASS	END=160000641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	160000642	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:60:60
chr1	160000643	.	A	.	.	PASS	END=160000672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	160000673	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:48:60
chr1	160000674	.	A	.	.	PASS	END=160000680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	160000681	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:45:60
chr1	160000682	.	T	.	.	PASS	END=160000708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr1	160000709	.	T	.	.	PASS	END=160000713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	160000714	.	A	.	.	PASS	END=160000733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	160000734	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:27:60
chr1	160000735	.	C	.	.	PASS	END=160000752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	160000753	.	A	.	.	PASS	END=160000762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr1	160000763	.	T	.	.	PASS	END=160000767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:54:60
chr1	160000768	.	C	.	.	PASS	END=160000775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	160000776	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:36:60
chr1	160000777	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:72:60
chr1	160000778	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:33:27:60
chr1	160000779	.	A	.	.	PASS	END=160000789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	160000790	.	T	.	.	PASS	END=160000809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	160000810	.	G	.	.	PASS	END=160000811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:60
chr1	160000812	.	C	.	.	PASS	END=160000826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	160000827	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:30:60
chr1	160000828	.	A	.	.	PASS	END=160000851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	160000852	.	A	.	.	PASS	END=160000858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	160000859	.	T	.	.	PASS	END=160000863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	160000864	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:9:60
chr1	160000865	.	A	.	.	PASS	END=160000876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	160000877	.	A	.	.	PASS	END=160000893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	160000894	.	C	.	.	PASS	END=160000914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	160000915	.	A	.	.	PASS	END=160000966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	160000967	.	A	.	.	LowGQX	END=160000970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	160000971	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	160000972	.	G	.	.	LowGQX	END=160000974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	160000975	.	A	.	.	PASS	END=160000976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	160000977	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	160000978	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	160000979	.	A	.	.	LowGQX	END=160000990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	160000991	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	160000992	.	T	.	.	LowGQX	END=160000997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	160000998	.	G	.	.	LowGQX	END=160001001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	160001002	.	C	.	.	LowGQX	END=160001006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	160001007	.	A	.	.	LowGQX	END=160001009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	160001010	.	C	.	.	LowGQX	END=160001013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	160001014	.	G	.	.	LowGQX	END=160001043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	160001044	.	C	.	.	LowGQX	END=160001062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	160001063	.	A	.	.	LowGQX	END=160001078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	160001079	.	C	.	.	LowGQX	END=160001081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	160001082	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:1:60
chr1	160001083	.	A	.	.	LowGQX	END=160001089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	160001090	.	T	.	.	LowGQX	END=160001099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	160001100	.	C	.	.	LowGQX	END=160001103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	160001104	.	G	.	.	LowGQX	END=160001109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	160001110	.	T	.	.	LowGQX	END=160001125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	160001126	.	G	.	.	PASS	END=160001128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	160001129	.	T	.	.	LowGQX	END=160001131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	160001132	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	160001133	.	G	.	.	LowGQX	END=160001135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	160001136	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	160001137	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	160001138	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	160001139	.	A	.	.	LowGQX	END=160001141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	160001142	.	A	.	.	PASS	END=160001143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	160001144	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	160001145	.	C	.	.	LowGQX	END=160001149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	160001150	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	160001151	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	160001152	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	160001153	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	160001154	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	160001155	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	160001156	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	160001157	.	A	.	.	LowGQX	END=160001158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	160001159	.	G	.	.	PASS	END=160001164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	160001165	.	C	.	.	LowGQX	END=160001169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	160001170	.	C	.	.	PASS	END=160001188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	160001189	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	160001190	.	G	.	.	PASS	END=160001196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	160001197	.	G	.	.	PASS	END=160001202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	160001203	.	G	.	.	PASS	END=160001213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	160001214	.	T	.	.	PASS	END=160001227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	160001228	.	C	.	.	PASS	END=160001230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	160001231	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:1:60
chr1	160001232	.	T	.	.	PASS	END=160001236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	160001237	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	160001238	.	G	.	.	PASS	END=160001239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	160001240	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	160001241	.	A	.	.	PASS	END=160001243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	160001244	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	160001245	.	T	.	.	PASS	END=160001247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	160001248	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	160001249	.	A	.	.	PASS	END=160001257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	160001258	.	C	.	.	LowGQX	END=160001259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	160001260	.	G	.	.	PASS	END=160001267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	160001268	.	T	.	.	PASS	END=160001276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	160001277	.	T	.	.	PASS	END=160001280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	160001281	.	G	.	.	PASS	END=160001284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	160001285	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:12:60
chr1	160001286	.	A	.	.	PASS	END=160001297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	160001298	.	G	.	.	PASS	END=160001301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	160001302	.	G	.	.	PASS	END=160001310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	160001311	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:48:60
chr1	160001312	.	G	.	.	PASS	END=160001330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	160001331	.	A	.	.	PASS	END=160001334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	160001335	.	C	.	.	PASS	END=160001383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	160001384	.	T	.	.	PASS	END=160001406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	160001407	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:73:60
chr1	160001408	.	C	.	.	PASS	END=160001467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:78:60
chr1	160001468	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:69:60
chr1	160001469	.	C	.	.	PASS	END=160001525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	160001526	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:64:60
chr1	160001527	.	C	.	.	PASS	END=160001537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	160001538	.	C	.	.	PASS	END=160001548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	160001549	.	T	.	.	PASS	END=160001555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	160001556	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:30:60
chr1	160001557	.	C	.	.	PASS	END=160001559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	160001560	.	A	.	.	PASS	END=160001567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	160001568	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:26:60
chr1	160001569	.	C	.	.	PASS	END=160001574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	160001575	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:42:60
chr1	160001576	.	C	.	.	PASS	END=160001580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	160011132	.	A	.	.	PASS	END=160011140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	160011141	.	G	.	.	PASS	END=160011152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	160011153	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:72:60
chr1	160011154	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:30:60
chr1	160011155	.	A	.	.	PASS	END=160011167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	160011168	.	A	.	.	PASS	END=160011173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	160011174	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:53:60
chr1	160011175	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:72:60
chr1	160011176	.	C	.	.	PASS	END=160011189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:93:60
chr1	160011190	.	T	.	.	PASS	END=160011202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	160011203	.	C	.	.	PASS	END=160011228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	160011229	.	G	.	.	PASS	END=160011247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	160011248	.	C	.	.	PASS	END=160011272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	160011273	.	T	.	.	PASS	END=160011278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	160011279	.	G	.	.	PASS	END=160011301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	160011302	.	C	.	.	PASS	END=160011435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:268:99:60
chr1	160011436	.	A	.	.	PASS	END=160011602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	160011603	.	T	.	.	PASS	END=160011657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	160011658	.	T	.	.	PASS	END=160011676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	160011677	.	T	.	.	PASS	END=160011721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	160011722	.	C	.	.	PASS	END=160011751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	160011752	.	T	.	.	PASS	END=160011786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	160011787	.	A	.	.	PASS	END=160011811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	160011812	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:99:60
chr1	160011813	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:39:60
chr1	160011814	.	G	.	.	PASS	END=160011921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:95:60
chr1	160011922	.	C	.	.	PASS	END=160011973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	160011974	.	C	.	.	PASS	END=160011986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	160011987	.	C	.	.	PASS	END=160011991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	160011992	.	G	.	.	PASS	END=160012026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	160012027	.	A	.	.	PASS	END=160012061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	160012062	.	A	.	.	PASS	END=160012118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:246:99:60
chr1	160012119	.	A	.	.	PASS	END=160012170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:302:99:60
chr1	160012171	.	T	.	.	PASS	END=160012298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:341:99:60
chr1	160012299	.	A	.	.	PASS	END=160012309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:262:99:60
chr1	160012310	.	C	.	.	PASS	END=160012348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	160012349	.	A	.	.	PASS	END=160012373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	160053819	.	C	.	.	PASS	END=160053820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	160053821	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:36:60
chr1	160053822	.	T	.	.	PASS	END=160053823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	160053824	.	G	.	.	PASS	END=160053832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	160053833	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:53:60
chr1	160053834	.	A	.	.	PASS	END=160053851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	160053852	.	G	.	.	PASS	END=160053884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	160053885	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:77:39:60
chr1	160053886	.	G	.	.	PASS	END=160053909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	160053910	.	G	.	.	PASS	END=160053953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	160053954	.	T	.	.	PASS	END=160054095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	160054096	.	G	.	.	PASS	END=160054272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	160054273	.	C	.	.	PASS	END=160054408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	160054409	.	T	.	.	PASS	END=160054492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	160054493	.	C	.	.	PASS	END=160054594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	160054595	.	G	.	.	PASS	END=160054621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	160054622	.	G	.	.	PASS	END=160054666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	160054667	.	A	.	.	PASS	END=160054672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	160057274	.	A	.	.	PASS	END=160057305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	160057306	.	T	.	.	PASS	END=160057398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:60
chr1	160057399	.	C	.	.	PASS	END=160057424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	160057425	.	A	.	.	PASS	END=160057436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	160057437	.	C	.	.	PASS	END=160057465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	160057466	.	C	.	.	PASS	END=160057475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	160057476	.	T	.	.	PASS	END=160057480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	160057481	.	C	.	.	PASS	END=160057487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	160057488	.	A	.	.	PASS	END=160057489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	160057490	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:45:60
chr1	160057491	.	C	.	.	PASS	END=160057503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	160057504	.	A	.	.	PASS	END=160057512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	160057513	.	A	.	.	PASS	END=160057517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:59
chr1	160057518	.	G	.	.	PASS	END=160057521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:58
chr1	160057522	.	C	T	60.70	PASS	BaseQRankSum=0.322;DP=10;Dels=0.00;FS=3.332;HRun=0;HaplotypeScore=6.6284;MQ=58;MQ0=0;MQRankSum=0.322;QD=6.07;ReadPosRankSum=1.221;SB=-21.10	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:5,3:10:90.69:91,0,156:58:61:0.375
chr1	160057523	.	G	.	.	LowGQX	END=160057525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:57
chr1	160057526	.	G	.	.	LowGQX	END=160057527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:57
chr1	160057528	.	A	.	42.03	LowGQX	DP=5;MQ=55;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:55:12
chr1	160057529	.	G	.	.	LowGQX	END=160057531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:54
chr1	160057532	.	G	.	.	LowGQX	END=160057533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:52
chr1	160057534	.	C	.	33	LowGQX	DP=3;MQ=52;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:52:3
chr1	160057535	.	G	.	33	LowGQX	DP=3;MQ=52;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:52:3
chr1	160057536	.	G	.	.	LowGQX	END=160057537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:52
chr1	160057538	.	T	.	10.70	LowGQX	DP=3;MQ=52;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:0.05:52:0
chr1	160057539	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:1:58
chr1	160057540	.	G	.	.	PASS	END=160057541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:58
chr1	160057542	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:18:58
chr1	160057543	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:39:59
chr1	160057544	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:15:59
chr1	160057545	.	G	.	.	PASS	END=160057546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:59
chr1	160057547	.	T	.	10.85	LowGQX	DP=22;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:17:22:0.05:59:0
chr1	160057548	.	G	.	.	PASS	END=160057550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:59
chr1	160057551	.	G	.	.	PASS	END=160057552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:59
chr1	160057553	.	T	.	22.54	LowGQX	DP=30;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:23:30:0.71:59:1
chr1	160057554	.	G	.	.	PASS	END=160057555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:59
chr1	160057556	.	C	.	.	PASS	END=160057557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:59
chr1	160057558	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:63:59
chr1	160057559	.	G	.	.	PASS	END=160057567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:59
chr1	160057568	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:57:59
chr1	160057569	.	G	.	.	PASS	END=160057571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:59
chr1	160057572	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:57:59
chr1	160057573	.	G	.	.	PASS	END=160057575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:59
chr1	160057576	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:57:59
chr1	160057577	.	G	.	.	PASS	END=160057591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:59
chr1	160057592	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:24:60
chr1	160057593	.	G	.	.	PASS	END=160057595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	160057596	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:36:60
chr1	160057597	.	C	.	.	PASS	END=160057602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	160057603	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:21:60
chr1	160057604	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:51:60
chr1	160057605	.	T	.	.	PASS	END=160057606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	160057607	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:60
chr1	160057608	.	C	.	.	PASS	END=160057609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	160061611	.	G	.	.	LowGQX	END=160061730	GT	./.
chr1	160062059	.	G	.	.	LowGQX	END=160062476	GT	./.
chr1	160062477	.	G	.	.	LowGQX	END=160062488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160062712	.	A	.	.	LowGQX	END=160062738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160062739	.	A	.	.	LowGQX	END=160063123	GT	./.
chr1	160063498	.	A	.	.	LowGQX	END=160063508	GT	./.
chr1	160063509	.	G	.	.	LowGQX	END=160063553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160063554	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	160063555	.	C	.	.	LowGQX	END=160063570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160063571	.	T	.	.	LowGQX	.	GT	./.
chr1	160063572	.	C	.	.	LowGQX	END=160063588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160063589	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	160063590	.	C	.	.	LowGQX	END=160063622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160063623	.	G	.	.	LowGQX	.	GT	./.
chr1	160063624	.	G	.	.	LowGQX	END=160063638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160063639	.	C	.	.	LowGQX	END=160063727	GT	./.
chr1	160063728	.	A	.	.	LowGQX	END=160063802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160063803	.	A	.	.	LowGQX	.	GT	./.
chr1	160063804	.	C	.	.	LowGQX	END=160063858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160063859	.	A	.	.	LowGQX	.	GT	./.
chr1	160063860	.	G	.	.	LowGQX	END=160063963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160064657	.	A	.	.	LowGQX	END=160064726	GT	./.
chr1	160064727	.	T	.	.	LowGQX	END=160064878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160064879	.	A	.	.	LowGQX	END=160065038	GT	./.
chr1	160068181	.	A	.	.	LowGQX	END=160068183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160068184	.	G	.	.	LowGQX	.	GT	./.
chr1	160068185	.	G	.	.	LowGQX	END=160068186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160068187	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	160068188	.	G	.	.	LowGQX	.	GT	./.
chr1	160068189	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160068190	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	160068191	.	T	.	.	LowGQX	END=160068205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160068206	.	T	.	.	LowGQX	.	GT	./.
chr1	160068207	.	A	.	.	LowGQX	END=160068208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160068209	.	C	.	.	LowGQX	.	GT	./.
chr1	160068210	.	A	.	.	LowGQX	END=160068214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160068215	.	C	.	.	LowGQX	.	GT	./.
chr1	160068216	.	A	.	.	LowGQX	END=160068224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160068225	.	A	.	.	LowGQX	.	GT	./.
chr1	160068226	.	G	.	.	LowGQX	END=160068232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160068233	.	C	.	.	LowGQX	.	GT	./.
chr1	160068234	.	G	.	.	LowGQX	END=160068235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160068236	.	C	.	.	LowGQX	.	GT	./.
chr1	160068237	.	A	.	.	LowGQX	END=160068238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160068239	.	C	.	.	LowGQX	.	GT	./.
chr1	160068240	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160068241	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	160068242	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160068243	.	G	.	.	LowGQX	.	GT	./.
chr1	160068244	.	T	.	.	LowGQX	END=160068248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160068249	.	C	.	.	LowGQX	.	GT	./.
chr1	160068250	.	T	.	.	LowGQX	END=160068253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160068254	.	G	.	.	LowGQX	END=160068280	GT	./.
chr1	160083261	.	T	.	.	LowGQX	END=160083360	GT	./.
chr1	160085601	.	A	.	.	PASS	END=160085648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	160085649	.	A	.	.	PASS	END=160085704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	160085705	.	A	.	.	PASS	END=160085714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	160090645	.	G	.	.	PASS	END=160090650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	160090651	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:72:60
chr1	160090652	.	G	.	.	PASS	END=160090668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	160090669	.	C	.	.	PASS	END=160090673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	160090674	.	T	C	2232.22	PASS	DP=73;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=34.9297;MQ=60;MQ0=0;QD=30.58;SB=-444.61	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,71:73:99:2265,178,0:60:99:1.000
chr1	160090675	.	G	.	.	PASS	END=160090681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	160090681	.	CCCTT	C	1898.91	PASS	BaseQRankSum=1.401;DP=78;FS=1.069;HRun=0;HaplotypeScore=444.0775;MQ=60;MQ0=0;MQRankSum=0.212;QD=24.34;ReadPosRankSum=-0.212;SB=-368.41	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:46,32:78:99:1938,0,2863:60:99:0.410
chr1	160090682	.	C	.	141.35	PASS	DP=79;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:47:47:99:60:99
chr1	160090683	.	C	.	135.30	PASS	DP=79;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:47:47:99:60:99
chr1	160090684	.	T	.	123.28	PASS	DP=80;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:47:48:93.28:60:93
chr1	160090685	.	T	.	135.33	PASS	DP=80;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:48:48:99:60:99
chr1	160090686	.	C	.	.	PASS	END=160090698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	160090699	.	G	.	.	PASS	END=160090764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	160090765	.	A	.	.	PASS	END=160090845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	160090846	.	A	.	.	PASS	END=160090851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	160090922	.	G	.	.	PASS	END=160091004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	160091005	.	T	.	.	PASS	END=160091042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	160091043	.	T	.	.	PASS	END=160091044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	160091045	.	A	.	.	PASS	END=160091066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	160091067	.	G	.	.	PASS	END=160091076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	160091077	.	G	.	.	PASS	END=160091088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	160091089	.	A	.	.	PASS	END=160091092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	160092952	.	G	.	.	PASS	END=160092977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	160092978	.	C	.	.	PASS	END=160093047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:279:99:60
chr1	160093048	.	C	.	.	PASS	END=160093191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:301:99:60
chr1	160093192	.	C	.	.	PASS	END=160093221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:258:99:60
chr1	160093222	.	C	T	7161.18	PASS	BaseQRankSum=-1.259;DP=249;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=14.2761;MQ=60;MQ0=0;MQRankSum=1.676;QD=28.76;ReadPosRankSum=0.953;SB=-2204.51	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,248:249:99:7161,505,0:60:99:0.996
chr1	160093223	.	G	.	.	PASS	END=160093243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	160093244	.	T	.	.	PASS	END=160093257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	160093682	.	C	.	.	PASS	END=160093684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	160093685	.	T	.	.	PASS	END=160093715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	160093716	.	C	.	.	PASS	END=160093731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	160093732	.	G	.	.	PASS	END=160093844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:59
chr1	160093845	.	A	.	.	PASS	END=160093878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	160093879	.	T	.	.	PASS	END=160093897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	160094025	.	G	.	.	PASS	END=160094049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	160094050	.	A	.	.	PASS	END=160094089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	160094090	.	C	.	.	PASS	END=160094233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	160094234	.	A	.	.	PASS	END=160094266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	160094267	.	T	.	.	PASS	END=160094271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	160094875	.	G	.	.	PASS	END=160094901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	160094902	.	G	.	.	PASS	END=160095003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	160095004	.	A	.	249.54	PASS	DP=142;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:112:142:99:60:99
chr1	160095005	.	C	.	.	PASS	END=160095045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	160095046	.	G	.	.	PASS	END=160095072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	160095073	.	A	.	.	PASS	END=160095094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	160097291	.	C	.	.	PASS	END=160097318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	160097319	.	C	.	.	PASS	END=160097353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	160097354	.	G	.	.	PASS	END=160097382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	160097383	.	G	.	.	PASS	END=160097523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	160097524	.	C	.	.	PASS	END=160097556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	160097557	.	C	.	.	PASS	END=160097590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	160097591	.	G	.	.	PASS	END=160097613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	160097614	.	A	.	.	PASS	END=160097632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	160097633	.	C	.	.	PASS	END=160097661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	160098185	.	T	.	.	LowGQX	END=160098187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160098188	.	G	.	.	LowGQX	END=160098193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	160098194	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	160098195	.	T	.	.	LowGQX	END=160098214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	160098215	.	A	.	.	LowGQX	END=160098225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	160098226	.	A	.	.	LowGQX	END=160098227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	160098228	.	C	.	.	LowGQX	END=160098234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	160098235	.	A	.	.	LowGQX	END=160098236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	160098237	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	160098238	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	160098239	.	C	.	.	LowGQX	END=160098241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	160098242	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	160098243	.	A	.	.	LowGQX	END=160098245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	160098246	.	G	.	.	LowGQX	END=160098252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	160098253	.	T	.	.	LowGQX	END=160098257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	160098258	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	160098259	.	T	.	.	LowGQX	END=160098260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	160098261	.	A	.	.	LowGQX	.	GT	./.
chr1	160098262	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	160098263	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	160098264	.	G	.	.	LowGQX	END=160098266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	160098267	.	A	.	.	LowGQX	END=160098268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	160098269	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	160098270	.	C	.	.	LowGQX	END=160098271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	160098272	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	160098273	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	160098274	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr1	160098275	.	T	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	160098276	.	C	.	.	LowGQX	END=160098277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	160098278	.	C	.	.	LowGQX	END=160098279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	160098280	.	A	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	160098281	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	160098282	.	A	.	.	LowGQX	END=160098283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	160098284	.	A	.	.	LowGQX	END=160098289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	160098290	.	A	.	.	LowGQX	END=160098293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	160098294	.	G	.	.	LowGQX	END=160098301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	160098302	.	A	.	.	LowGQX	END=160098305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	160098306	.	T	.	.	LowGQX	END=160098307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	160098308	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	160098309	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	160098310	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	160098311	.	A	.	.	LowGQX	END=160098312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	160098352	.	G	.	.	LowGQX	END=160098355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	160098356	.	G	.	.	LowGQX	END=160098365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	160098366	.	G	.	.	PASS	END=160098367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	160098368	.	C	.	.	LowGQX	END=160098369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	160098370	.	C	.	.	PASS	END=160098371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	160098372	.	G	.	.	PASS	END=160098376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	160098377	.	G	.	.	PASS	END=160098394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	160098395	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:39:60
chr1	160098396	.	T	.	.	PASS	END=160098411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	160098412	.	A	.	.	PASS	END=160098416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	160098417	.	T	.	.	PASS	END=160098433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	160098434	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:90:60
chr1	160098435	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:52:59
chr1	160098436	.	T	.	.	PASS	END=160098452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:58
chr1	160098453	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:64:58
chr1	160098454	.	C	.	.	PASS	END=160098496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:58
chr1	160098497	.	A	.	.	PASS	END=160098542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:59
chr1	160098543	.	G	A	606.92	PASS	BaseQRankSum=0.614;DP=79;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.6815;MQ=59;MQ0=0;MQRankSum=-1.383;QD=7.68;ReadPosRankSum=-0.355;SB=-354.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:47,32:79:99:637,0,1068:59:99:0.405
chr1	160098544	.	G	.	.	PASS	END=160098571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:59
chr1	160098572	.	G	.	.	PASS	END=160098634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:59
chr1	160098635	.	A	.	.	PASS	END=160098741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	160098742	.	C	.	.	PASS	END=160098864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	160098865	.	A	.	.	PASS	END=160098920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	160098921	.	C	.	.	PASS	END=160098927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:61
chr1	160098927	.	A	AG	4237.77	PASS	BaseQRankSum=1.396;DP=104;FS=0.000;HRun=1;HaplotypeScore=205.6335;MQ=61;MQ0=0;MQRankSum=0.925;QD=40.75;ReadPosRankSum=-0.925;SB=-1098.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,102:104:99:4238,266,0:61:99:0.981
chr1	160098928	.	G	.	.	PASS	END=160098930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	160099005	.	T	.	.	PASS	END=160099060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	160099061	.	C	.	.	PASS	END=160099090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr1	160099091	.	G	.	.	PASS	END=160099221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:259:99:60
chr1	160099222	.	A	.	.	PASS	END=160099241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	160099841	.	C	.	.	LowGQX	END=160099842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	160099843	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	160099844	.	T	.	.	LowGQX	END=160099847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	160099848	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	160099849	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	160099850	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	160099851	.	A	.	.	LowGQX	END=160099852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	160099853	.	A	.	.	LowGQX	END=160099854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	160099855	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	160099856	.	T	.	.	LowGQX	END=160099857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	160099858	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	160099859	.	G	.	.	LowGQX	END=160099864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	160099865	.	C	.	.	LowGQX	END=160099871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	160099872	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	160099873	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	160099874	.	T	.	.	PASS	END=160099875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	160099876	.	C	.	.	LowGQX	END=160099879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	160099880	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	160099881	.	T	.	.	LowGQX	END=160099882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	160099883	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	160099884	.	C	.	.	LowGQX	END=160099885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	160099886	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	160099887	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	160099888	.	C	.	.	PASS	END=160099894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	160099895	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	160099896	.	C	.	.	PASS	END=160099906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	160099907	.	C	.	.	PASS	END=160099915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	160099916	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:60
chr1	160099917	.	G	.	.	PASS	END=160099923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	160099924	.	G	.	.	PASS	END=160099930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr1	160099931	.	G	.	.	PASS	END=160099936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	160099937	.	G	.	.	PASS	END=160099954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	160099955	.	G	.	.	PASS	END=160099971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:80:60
chr1	160099972	.	G	.	.	PASS	END=160099992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	160099993	.	G	.	.	PASS	END=160100086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	160100087	.	A	.	.	PASS	END=160100122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:83:60
chr1	160100123	.	G	.	.	PASS	END=160100132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	160100161	.	G	.	.	PASS	END=160100180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:60
chr1	160100181	.	G	.	.	PASS	END=160100205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	160100206	.	C	.	.	PASS	END=160100310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	160100311	.	G	.	.	PASS	END=160100326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	160100327	.	T	.	.	PASS	END=160100341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	160100342	.	T	.	.	PASS	END=160100349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	160100350	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:24:60
chr1	160100351	.	A	.	.	PASS	END=160100355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	160100356	.	C	.	.	PASS	END=160100362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	160100363	.	C	.	.	PASS	END=160100366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	160100367	.	T	.	.	PASS	END=160100368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	160100369	.	C	.	.	PASS	END=160100389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	160100390	.	A	.	.	PASS	END=160100392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	160100393	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:51:60
chr1	160100394	.	G	.	.	PASS	END=160100409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	160100410	.	T	.	.	PASS	END=160100411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	160100412	.	C	.	.	PASS	END=160100418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	160100419	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr1	160100420	.	C	.	.	PASS	END=160100421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	160100422	.	T	.	.	LowGQX	END=160100423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	160100424	.	C	.	.	PASS	END=160100428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	160100429	.	T	.	.	LowGQX	END=160100430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	160100431	.	C	.	.	PASS	END=160100432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	160100433	.	A	.	.	LowGQX	END=160100434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	160100435	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	160100436	.	G	.	.	LowGQX	END=160100437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	160100438	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr1	160104223	.	G	.	.	PASS	END=160104413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr1	160104414	.	A	.	.	PASS	END=160104440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	160104441	.	T	.	.	PASS	END=160104461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	160104884	.	G	.	.	PASS	END=160104895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	160104896	.	G	.	.	PASS	END=160104898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	160104899	.	A	.	.	PASS	END=160104910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	160104911	.	T	.	.	PASS	END=160104921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	160104922	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:60:60
chr1	160104923	.	C	.	.	PASS	END=160104925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:77:60
chr1	160104926	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:66:60
chr1	160104927	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:99:60
chr1	160104928	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:55:60
chr1	160104929	.	C	.	.	PASS	END=160104948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:77:60
chr1	160104949	.	G	.	.	PASS	END=160104960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	160104961	.	G	.	.	PASS	END=160104993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	160104994	.	T	.	.	PASS	END=160105058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	160105059	.	A	.	.	PASS	END=160105094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:90:60
chr1	160105095	.	G	.	.	PASS	END=160105104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	160105105	.	G	.	.	PASS	END=160105112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	160105113	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr1	160105114	.	A	.	.	PASS	END=160105130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	160105131	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:99:60
chr1	160105132	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:60:60
chr1	160105133	.	A	.	.	PASS	END=160105136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	160105173	.	G	.	.	PASS	END=160105181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	160105182	.	G	.	.	PASS	END=160105187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	160105188	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:57:60
chr1	160105189	.	G	.	.	PASS	END=160105190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	160105191	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:69:60
chr1	160105192	.	T	.	.	PASS	END=160105193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	160105194	.	C	.	.	PASS	END=160105209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	160105210	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:66:60
chr1	160105211	.	G	.	.	PASS	END=160105216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	160105217	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:75:60
chr1	160105218	.	C	.	.	PASS	END=160105273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	160105274	.	G	.	.	PASS	END=160105355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:58
chr1	160105356	.	G	.	.	PASS	END=160105360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:58
chr1	160105361	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:64:59
chr1	160105362	.	T	.	.	PASS	END=160105377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:58
chr1	160105378	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:58:58
chr1	160105379	.	G	.	.	PASS	END=160105416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:58
chr1	160105417	.	T	.	.	PASS	END=160105419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	160105420	.	T	.	.	PASS	END=160105433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	160105434	.	A	.	.	PASS	END=160105441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	160105442	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:48:60
chr1	160105443	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:69:60
chr1	160105578	.	G	.	.	PASS	END=160105593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	160105594	.	C	.	.	PASS	END=160105615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	160105616	.	A	.	.	PASS	END=160105636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	160105637	.	A	.	.	PASS	END=160105664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	160105665	.	C	.	.	PASS	END=160105764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	160105765	.	T	.	.	PASS	END=160105786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	160105787	.	A	.	.	PASS	END=160105813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	160105814	.	C	.	.	PASS	END=160105833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	160105834	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:99:60
chr1	160105986	.	C	.	.	PASS	END=160105993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	160105994	.	T	.	.	PASS	END=160106003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	160106004	.	T	.	.	PASS	END=160106006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:72:60
chr1	160106007	.	C	.	.	PASS	END=160106025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	160106026	.	A	.	.	PASS	END=160106067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:95:60
chr1	160106068	.	C	.	.	PASS	END=160106154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	160106155	.	A	.	.	PASS	END=160106184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	160106185	.	A	.	.	PASS	END=160106200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	160106201	.	G	.	.	PASS	END=160106211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	160106309	.	C	.	.	PASS	END=160106328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	160106329	.	C	.	.	PASS	END=160106349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	160106350	.	C	.	.	PASS	END=160106371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	160106372	.	C	.	.	PASS	END=160106466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	160106467	.	A	.	.	PASS	END=160106513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	160106514	.	T	.	.	PASS	END=160106556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	160106640	.	C	.	.	PASS	END=160106708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	160106709	.	G	.	.	PASS	END=160106800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	160106801	.	A	.	.	PASS	END=160106824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	160106825	.	A	.	.	PASS	END=160106841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	160106842	.	C	.	.	PASS	END=160106865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	160106866	.	A	.	.	PASS	END=160106873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	160109379	.	T	.	.	PASS	END=160109404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	160109405	.	G	.	.	PASS	END=160109483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	160109484	.	C	.	.	PASS	END=160109582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	160109632	.	G	.	.	PASS	END=160109664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	160109665	.	C	.	.	PASS	END=160109727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	160109728	.	C	.	.	PASS	END=160109768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	160109769	.	C	.	.	PASS	END=160109798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:93:60
chr1	160109799	.	G	.	.	PASS	END=160109809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	160109810	.	G	.	.	PASS	END=160109811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:75:60
chr1	160109812	.	C	.	.	PASS	END=160109825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	160111008	.	C	.	.	PASS	END=160111049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	160111050	.	A	.	.	PASS	END=160111097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	160111098	.	G	.	.	PASS	END=160111109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	160111110	.	T	.	.	PASS	END=160111112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	160111113	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:60
chr1	160111114	.	C	.	.	PASS	END=160111143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	160111144	.	A	.	.	PASS	END=160111159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	160111160	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:33:60
chr1	160111161	.	T	.	.	PASS	END=160111163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr1	160121829	.	C	.	.	LowGQX	END=160121979	GT	./.
chr1	160122935	.	T	.	.	LowGQX	END=160123034	GT	./.
chr1	160124833	.	A	.	.	LowGQX	END=160124989	GT	./.
chr1	160124990	.	G	.	.	LowGQX	END=160125040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160125833	.	A	.	.	LowGQX	END=160125844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	160125845	.	G	.	.	PASS	END=160125864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:33:60
chr1	160125865	.	G	.	.	PASS	END=160125950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	160128790	.	A	.	.	LowGQX	END=160128928	GT	./.
chr1	160129197	.	A	.	.	LowGQX	END=160129258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160129259	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	160129260	.	A	.	.	LowGQX	END=160129281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	160129282	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	160129283	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	160129284	.	A	.	.	LowGQX	END=160129304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	160129305	.	A	.	10.71	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.05:60:0
chr1	160129306	.	C	.	.	LowGQX	END=160129310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	160129311	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	160129312	.	G	.	.	LowGQX	END=160129318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	160133944	.	A	.	.	LowGQX	END=160134216	GT	./.
chr1	160136316	.	A	.	.	PASS	END=160136320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:59
chr1	160136321	.	T	.	.	PASS	END=160136326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:59
chr1	160136327	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:42:59
chr1	160136328	.	C	.	.	PASS	END=160136335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:59
chr1	160136336	.	G	.	.	PASS	END=160136349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:59
chr1	160136350	.	G	A	611.42	PASS	BaseQRankSum=0.622;DP=44;Dels=0.00;FS=5.743;HRun=0;HaplotypeScore=5.7870;MQ=59;MQ0=0;MQRankSum=-1.988;QD=13.90;ReadPosRankSum=1.403;SB=-306.60	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:16,28:44:99:641,0,380:59:99:0.636
chr1	160136351	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:52:59
chr1	160136352	.	G	.	.	PASS	END=160136386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:59
chr1	160136387	.	G	.	.	PASS	END=160136486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:59
chr1	160136487	.	A	.	.	PASS	END=160136509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	160136510	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:65:60
chr1	160136511	.	A	.	.	PASS	END=160136517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	160136518	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:72:60
chr1	160136756	.	A	.	.	LowGQX	END=160136759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	160136760	.	A	.	.	LowGQX	END=160136766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	160136767	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	160136768	.	T	.	.	LowGQX	END=160136771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	160136772	.	A	.	.	LowGQX	END=160136774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	160136775	.	A	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	160136776	.	G	.	.	LowGQX	END=160136783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	160136784	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	160136785	.	C	.	.	LowGQX	END=160136789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	160136790	.	T	.	.	LowGQX	END=160136805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160136806	.	T	.	.	LowGQX	.	GT	./.
chr1	160136807	.	C	.	.	LowGQX	END=160136814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160136815	.	T	.	.	LowGQX	.	GT	./.
chr1	160136816	.	C	.	.	LowGQX	END=160136819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160136820	.	A	.	.	LowGQX	.	GT	./.
chr1	160136821	.	A	.	.	LowGQX	END=160136828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160136829	.	G	.	.	LowGQX	.	GT	./.
chr1	160136830	.	A	.	.	LowGQX	END=160136847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160136848	.	A	.	.	LowGQX	.	GT	./.
chr1	160136849	.	G	.	.	LowGQX	END=160136859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160136860	.	T	.	.	LowGQX	END=160136869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	160137066	.	A	.	.	LowGQX	END=160137078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160137079	.	A	.	.	LowGQX	END=160137120	GT	./.
chr1	160137121	.	G	.	.	LowGQX	END=160137127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160137128	.	A	.	.	LowGQX	.	GT	./.
chr1	160137129	.	G	.	.	LowGQX	END=160137158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160137159	.	C	.	.	LowGQX	.	GT	./.
chr1	160137160	.	C	.	.	LowGQX	END=160137211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160137212	.	C	A	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	160137213	.	C	.	.	LowGQX	.	GT	./.
chr1	160137214	.	A	.	.	LowGQX	END=160137231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160137232	.	T	.	.	LowGQX	.	GT	./.
chr1	160137233	.	G	.	.	LowGQX	END=160137242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160137243	.	T	.	.	LowGQX	.	GT	./.
chr1	160137244	.	G	.	.	LowGQX	END=160137247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160137248	.	T	.	.	LowGQX	.	GT	./.
chr1	160137249	.	T	.	.	LowGQX	END=160137265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160141039	.	A	.	.	LowGQX	END=160141232	GT	./.
chr1	160141373	.	A	.	.	LowGQX	END=160141549	GT	./.
chr1	160143369	.	A	.	.	LowGQX	END=160143463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	160143464	.	G	.	.	LowGQX	END=160143476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160143477	.	T	.	.	LowGQX	.	GT	./.
chr1	160143478	.	T	.	.	LowGQX	END=160143482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160143483	.	T	.	.	LowGQX	.	GT	./.
chr1	160143484	.	C	.	.	LowGQX	END=160143490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160143491	.	A	.	.	LowGQX	.	GT	./.
chr1	160143492	.	G	.	.	LowGQX	END=160143494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160143495	.	A	.	.	LowGQX	.	GT	./.
chr1	160143496	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160143497	.	G	.	.	LowGQX	.	GT	./.
chr1	160143498	.	T	.	.	LowGQX	END=160143502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160143503	.	G	.	.	LowGQX	.	GT	./.
chr1	160143504	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160143505	.	C	.	.	LowGQX	.	GT	./.
chr1	160143506	.	A	.	.	LowGQX	END=160143507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160143508	.	G	.	.	LowGQX	.	GT	./.
chr1	160143509	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160143899	.	A	.	.	LowGQX	END=160143906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160143907	.	C	.	.	LowGQX	END=160143908	GT	./.
chr1	160143909	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160143910	.	A	.	.	LowGQX	END=160143911	GT	./.
chr1	160143912	.	C	.	.	LowGQX	END=160143916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160143917	.	G	.	.	LowGQX	.	GT	./.
chr1	160143918	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160143919	.	G	.	.	LowGQX	END=160143920	GT	./.
chr1	160143921	.	T	.	.	LowGQX	END=160143922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160143923	.	C	.	.	LowGQX	.	GT	./.
chr1	160143924	.	A	.	.	LowGQX	END=160143925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160143926	.	G	.	.	LowGQX	END=160143927	GT	./.
chr1	160143928	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160143929	.	G	.	.	LowGQX	.	GT	./.
chr1	160143930	.	C	.	.	LowGQX	END=160143932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160143933	.	A	.	.	LowGQX	END=160143934	GT	./.
chr1	160143935	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160143936	.	T	.	.	LowGQX	END=160143939	GT	./.
chr1	160143940	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160143941	.	G	.	.	LowGQX	.	GT	./.
chr1	160143942	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160143943	.	C	.	.	LowGQX	END=160143998	GT	./.
chr1	160143999	.	C	.	.	LowGQX	END=160144001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160144002	.	G	.	.	LowGQX	.	GT	./.
chr1	160144003	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160144004	.	A	.	.	LowGQX	.	GT	./.
chr1	160144005	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160144006	.	C	.	.	LowGQX	.	GT	./.
chr1	160144007	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160144008	.	C	.	.	LowGQX	END=160144010	GT	./.
chr1	160144011	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160144012	.	T	.	.	LowGQX	.	GT	./.
chr1	160144013	.	C	.	.	LowGQX	END=160144014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160144015	.	G	.	.	LowGQX	END=160144016	GT	./.
chr1	160144017	.	A	.	.	LowGQX	END=160144019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160144020	.	A	.	.	LowGQX	.	GT	./.
chr1	160144021	.	G	.	.	LowGQX	END=160144023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160144024	.	C	.	.	LowGQX	END=160144025	GT	./.
chr1	160144026	.	T	.	.	LowGQX	END=160144029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160144030	.	T	.	.	LowGQX	.	GT	./.
chr1	160144031	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160144032	.	T	.	.	LowGQX	END=160144033	GT	./.
chr1	160144034	.	G	.	.	LowGQX	END=160144035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160144036	.	G	.	.	LowGQX	.	GT	./.
chr1	160144037	.	G	.	.	LowGQX	END=160144040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160144041	.	G	.	.	LowGQX	.	GT	./.
chr1	160144042	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160144043	.	C	.	.	LowGQX	.	GT	./.
chr1	160144044	.	A	.	.	LowGQX	END=160144045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160144046	.	A	.	.	LowGQX	END=160144047	GT	./.
chr1	160144048	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160144049	.	C	.	.	LowGQX	.	GT	./.
chr1	160144050	.	T	.	.	LowGQX	END=160144053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160144367	.	A	.	.	PASS	END=160144398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	160144399	.	G	.	.	PASS	END=160144408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	160144409	.	C	.	.	PASS	END=160144440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	160144441	.	G	.	.	PASS	END=160144534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:60
chr1	160144535	.	A	.	.	PASS	END=160144539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	160145880	.	A	.	.	PASS	END=160145886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	160145887	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr1	160145888	.	T	.	.	PASS	END=160145896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	160145897	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:27:60
chr1	160145898	.	C	.	.	PASS	END=160145906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:60
chr1	160145907	.	G	.	.	PASS	END=160145909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:36:60
chr1	160145910	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:30:60
chr1	160145911	.	T	.	.	PASS	END=160145913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:36:60
chr1	160145914	.	A	.	.	PASS	END=160145927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:30:60
chr1	160145928	.	G	.	.	PASS	END=160145952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr1	160145953	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:1:60
chr1	160145954	.	C	.	.	PASS	END=160145987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	160145988	.	G	.	.	PASS	END=160145991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	160145992	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	160145993	.	T	.	.	PASS	END=160145994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	160145995	.	G	.	.	LowGQX	END=160145996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	160145997	.	A	.	.	PASS	END=160145998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	160145999	.	C	.	.	LowGQX	END=160146000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:60
chr1	160146001	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	160146002	.	T	.	.	LowGQX	END=160146009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	160146010	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:0:60
chr1	160146011	.	T	.	.	LowGQX	END=160146035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	160146036	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	160146037	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	160146038	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	160146267	.	A	.	.	LowGQX	END=160146285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160146286	.	G	.	.	LowGQX	.	GT	./.
chr1	160146287	.	G	.	.	LowGQX	END=160146288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160146289	.	T	.	.	LowGQX	END=160146394	GT	./.
chr1	160147307	.	A	.	.	LowGQX	END=160147426	GT	./.
chr1	160147427	.	C	.	.	LowGQX	END=160147428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160147429	.	T	.	.	LowGQX	.	GT	./.
chr1	160147430	.	G	.	.	LowGQX	END=160147456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160151472	.	A	.	.	LowGQX	END=160151606	GT	./.
chr1	160151718	.	A	.	.	LowGQX	END=160151823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160156002	.	C	.	.	LowGQX	END=160156149	GT	./.
chr1	160156150	.	C	.	.	LowGQX	END=160156161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160156426	.	T	.	.	LowGQX	END=160156465	GT	./.
chr1	160156466	.	G	.	.	LowGQX	END=160156525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160160541	.	C	.	.	LowGQX	END=160160822	GT	./.
chr1	160162585	.	C	.	.	LowGQX	END=160162684	GT	./.
chr1	160163529	.	C	.	.	LowGQX	END=160163554	GT	./.
chr1	160163555	.	G	.	.	LowGQX	END=160163572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160163573	.	G	.	.	LowGQX	.	GT	./.
chr1	160163574	.	A	.	.	LowGQX	END=160163586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160163587	.	G	.	.	LowGQX	.	GT	./.
chr1	160163588	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160163589	.	G	.	.	LowGQX	.	GT	./.
chr1	160163590	.	T	.	.	LowGQX	END=160163591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160163592	.	C	.	.	LowGQX	.	GT	./.
chr1	160163593	.	G	.	.	LowGQX	END=160163597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160163598	.	C	.	.	LowGQX	END=160163599	GT	./.
chr1	160163600	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160163601	.	G	.	.	LowGQX	.	GT	./.
chr1	160163602	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160163603	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	160163604	.	T	.	.	LowGQX	END=160163615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160163616	.	C	.	.	LowGQX	.	GT	./.
chr1	160163617	.	A	.	.	LowGQX	END=160163634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160163635	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	160163636	.	A	.	.	LowGQX	END=160163651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160163652	.	G	.	.	LowGQX	.	GT	./.
chr1	160163653	.	G	.	.	LowGQX	END=160163662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160163663	.	C	.	.	LowGQX	.	GT	./.
chr1	160163664	.	C	.	.	LowGQX	END=160163673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160163674	.	A	.	.	LowGQX	END=160163675	GT	./.
chr1	160163676	.	C	.	.	LowGQX	END=160163683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160163684	.	C	.	.	LowGQX	.	GT	./.
chr1	160163685	.	C	.	.	LowGQX	END=160163688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160164800	.	A	.	.	LowGQX	END=160164833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160164834	.	T	.	.	LowGQX	END=160164835	GT	./.
chr1	160164836	.	A	.	.	LowGQX	END=160164858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160164859	.	A	.	.	LowGQX	.	GT	./.
chr1	160164860	.	A	.	.	LowGQX	END=160164914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160164915	.	T	.	.	LowGQX	.	GT	./.
chr1	160165238	.	T	.	.	LowGQX	END=160165337	GT	./.
chr1	160165685	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160165686	.	G	.	.	LowGQX	.	GT	./.
chr1	160165687	.	G	.	.	LowGQX	END=160165690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160165691	.	C	.	.	LowGQX	.	GT	./.
chr1	160165692	.	A	.	.	LowGQX	END=160165693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160165694	.	A	.	.	LowGQX	.	GT	./.
chr1	160165695	.	G	.	.	LowGQX	END=160165697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160165698	.	G	.	.	LowGQX	.	GT	./.
chr1	160165699	.	C	.	.	LowGQX	END=160165712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160165713	.	G	.	.	LowGQX	.	GT	./.
chr1	160165714	.	A	.	.	LowGQX	END=160165720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160165721	.	T	.	.	LowGQX	END=160165722	GT	./.
chr1	160165723	.	G	.	.	LowGQX	END=160165724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160165725	.	T	.	.	LowGQX	.	GT	./.
chr1	160165726	.	T	.	.	LowGQX	END=160165727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160165728	.	C	.	.	LowGQX	END=160165729	GT	./.
chr1	160165730	.	A	.	.	LowGQX	END=160165732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160165733	.	A	.	.	LowGQX	.	GT	./.
chr1	160165734	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160165735	.	G	.	.	LowGQX	.	GT	./.
chr1	160165736	.	C	.	.	LowGQX	END=160165737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160165738	.	T	.	.	LowGQX	.	GT	./.
chr1	160165739	.	T	.	.	LowGQX	END=160165747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160165748	.	A	.	.	LowGQX	.	GT	./.
chr1	160165749	.	G	.	.	LowGQX	END=160165769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160165770	.	G	.	.	LowGQX	.	GT	./.
chr1	160165771	.	C	.	.	LowGQX	END=160165784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160165785	.	G	.	.	LowGQX	.	GT	./.
chr1	160165786	.	G	.	.	LowGQX	END=160165789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160165790	.	T	.	.	LowGQX	.	GT	./.
chr1	160165791	.	T	.	.	LowGQX	END=160165796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160165797	.	C	.	.	LowGQX	.	GT	./.
chr1	160165798	.	T	.	.	LowGQX	END=160165817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160165818	.	G	.	.	LowGQX	END=160165819	GT	./.
chr1	160167332	.	T	.	.	LowGQX	END=160167431	GT	./.
chr1	160168445	.	T	.	.	LowGQX	END=160168544	GT	./.
chr1	160168741	.	A	.	.	LowGQX	END=160168845	GT	./.
chr1	160169629	.	A	.	.	LowGQX	END=160169642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160169643	.	G	.	.	LowGQX	.	GT	./.
chr1	160169644	.	G	.	.	LowGQX	END=160169698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160169699	.	T	.	.	LowGQX	.	GT	./.
chr1	160169700	.	C	.	.	LowGQX	END=160169706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160169707	.	G	.	.	LowGQX	.	GT	./.
chr1	160169708	.	T	.	.	LowGQX	END=160169727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160169728	.	T	.	.	LowGQX	.	GT	./.
chr1	160171033	.	A	.	.	LowGQX	END=160171168	GT	./.
chr1	160178375	.	T	.	.	LowGQX	END=160178474	GT	./.
chr1	160181332	.	G	.	.	LowGQX	END=160181508	GT	./.
chr1	160182898	.	A	.	.	LowGQX	END=160182964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160182965	.	G	.	.	LowGQX	.	GT	./.
chr1	160182966	.	T	.	.	LowGQX	END=160182979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160182980	.	C	.	.	LowGQX	.	GT	./.
chr1	160182981	.	G	.	.	LowGQX	END=160183000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160183001	.	G	.	.	LowGQX	.	GT	./.
chr1	160183002	.	A	.	.	LowGQX	END=160183005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160183006	.	T	.	.	LowGQX	.	GT	./.
chr1	160183007	.	G	.	.	LowGQX	END=160183015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160183016	.	A	.	.	LowGQX	END=160183057	GT	./.
chr1	160183195	.	T	.	.	LowGQX	END=160183294	GT	./.
chr1	160187380	.	C	.	.	LowGQX	END=160187399	GT	./.
chr1	160187400	.	C	.	.	LowGQX	END=160187477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160187478	.	A	.	.	LowGQX	.	GT	./.
chr1	160187479	.	A	.	.	LowGQX	END=160187500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160188112	.	A	.	.	LowGQX	END=160188232	GT	./.
chr1	160188637	.	A	.	.	LowGQX	END=160188760	GT	./.
chr1	160192439	.	A	.	.	LowGQX	END=160192573	GT	./.
chr1	160194230	.	A	.	.	LowGQX	END=160194253	GT	./.
chr1	160194254	.	C	.	.	LowGQX	END=160194341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160194771	.	G	.	.	LowGQX	END=160194930	GT	./.
chr1	160195368	.	T	.	.	LowGQX	END=160195467	GT	./.
chr1	160201085	.	A	.	.	LowGQX	END=160201199	GT	./.
chr1	160206923	.	A	.	.	LowGQX	END=160207022	GT	./.
chr1	160208395	.	A	.	.	LowGQX	END=160208539	GT	./.
chr1	160209388	.	C	.	.	LowGQX	END=160209468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160209469	.	T	.	.	LowGQX	.	GT	./.
chr1	160209470	.	A	.	.	LowGQX	END=160209497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160209498	.	T	.	.	LowGQX	.	GT	./.
chr1	160209499	.	A	.	.	LowGQX	END=160209508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160209509	.	C	.	.	LowGQX	END=160209854	GT	./.
chr1	160209855	.	G	.	.	LowGQX	END=160209879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160209880	.	T	.	.	LowGQX	.	GT	./.
chr1	160209881	.	T	.	.	LowGQX	END=160209883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160209884	.	T	.	.	LowGQX	.	GT	./.
chr1	160209885	.	C	.	.	LowGQX	END=160209886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160209887	.	T	.	.	LowGQX	END=160209888	GT	./.
chr1	160209889	.	T	.	.	LowGQX	END=160209981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160209982	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	160209983	.	T	.	.	LowGQX	END=160210006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160210007	.	T	.	.	LowGQX	.	GT	./.
chr1	160210008	.	C	.	.	LowGQX	END=160210031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160210032	.	T	.	.	LowGQX	.	GT	./.
chr1	160210033	.	G	.	.	LowGQX	END=160210042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160210043	.	C	.	.	LowGQX	END=160210162	GT	./.
chr1	160213737	.	T	.	.	LowGQX	END=160213836	GT	./.
chr1	160233044	.	T	.	.	LowGQX	END=160233252	GT	./.
chr1	160246598	.	C	.	.	PASS	END=160246606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:87:60
chr1	160246607	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:60:60
chr1	160246608	.	A	.	.	PASS	END=160246674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	160246675	.	C	.	.	PASS	END=160246730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	160246731	.	T	.	.	PASS	END=160246741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	160246742	.	G	.	.	PASS	END=160246754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	160246755	.	C	.	.	PASS	END=160246782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	160246783	.	A	.	.	PASS	END=160246824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	160246825	.	A	.	.	PASS	END=160246910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	160246911	.	G	.	.	PASS	END=160246989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	160246989	.	CT	C	240.00	LowQD	BaseQRankSum=-1.028;DP=194;FS=5.031;HRun=13;HaplotypeScore=865.3887;MQ=60;MQ0=0;MQRankSum=-0.048;QD=1.24;ReadPosRankSum=-0.352;SB=-76.58	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:142,28:194:99:279,0,2841:60:99:0.165
chr1	160246990	.	T	.	.	LowQD	.	GT:DP:GQX:MQ	0:162:99:60
chr1	160246991	.	T	.	.	PASS	END=160247002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	160247003	.	C	.	196.81	PASS	DP=173;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:128:173:99:60:99
chr1	160247004	.	A	.	.	PASS	END=160247152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	160247153	.	G	.	.	PASS	END=160247184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr1	160247185	.	G	C	4061.17	PASS	BaseQRankSum=1.288;DP=274;Dels=0.00;FS=1.029;HRun=0;HaplotypeScore=16.1504;MQ=60;MQ0=0;MQRankSum=0.303;QD=14.82;ReadPosRankSum=0.467;SB=-1418.82	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:134,140:274:99:4061,0,3683:60:99:0.511
chr1	160247186	.	G	.	.	PASS	END=160247267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:284:99:60
chr1	160247268	.	G	.	.	PASS	END=160247446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:388:99:60
chr1	160247447	.	C	.	.	PASS	END=160247540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:370:99:60
chr1	160247541	.	T	.	.	PASS	END=160247760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:398:99:60
chr1	160247761	.	C	.	.	PASS	END=160247845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:313:99:60
chr1	160247846	.	C	.	.	PASS	END=160248147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr1	160248148	.	A	.	.	PASS	END=160248339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:295:99:60
chr1	160248340	.	C	.	.	PASS	END=160248397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	160248398	.	T	.	.	PASS	END=160248633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	160248634	.	A	.	.	PASS	END=160248716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	160248717	.	G	.	.	PASS	END=160248773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	160248774	.	T	.	.	PASS	END=160248850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	160248851	.	C	.	.	PASS	END=160248882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	160248883	.	C	.	.	PASS	END=160248922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	160248923	.	A	.	.	PASS	END=160248992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	160248993	.	G	.	.	PASS	END=160249026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	160249027	.	A	.	.	PASS	END=160249161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	160249162	.	C	.	.	PASS	END=160249356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	160249357	.	T	.	.	PASS	END=160249395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	160249396	.	G	.	.	PASS	END=160249441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	160249442	.	G	.	.	PASS	END=160249454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	160249455	.	T	.	.	PASS	END=160249475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	160249528	.	A	.	.	PASS	END=160249580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	160249581	.	A	.	.	PASS	END=160249670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	160249671	.	A	.	.	PASS	END=160249686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	160249809	.	A	.	.	PASS	END=160249818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	160249819	.	T	.	.	PASS	END=160249826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	160249827	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:69:60
chr1	160249828	.	A	.	.	PASS	END=160249829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	160249830	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:69:60
chr1	160249831	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:99:60
chr1	160249832	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:66:60
chr1	160249833	.	C	.	.	PASS	END=160249871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	160249872	.	A	.	.	PASS	END=160249929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	160249930	.	G	.	.	PASS	END=160249959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	160249960	.	A	.	.	PASS	END=160250017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	160250018	.	T	.	.	PASS	END=160250080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	160250081	.	G	.	.	PASS	END=160250087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	160251778	.	G	.	.	PASS	END=160251791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	160251792	.	A	G	1350.23	PASS	BaseQRankSum=-0.183;DP=90;Dels=0.00;FS=5.565;HRun=0;HaplotypeScore=6.6709;MQ=60;MQ0=0;MQRankSum=-0.191;QD=15.00;ReadPosRankSum=-1.839;SB=-599.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:40,50:90:99:1380,0,958:60:99:0.556
chr1	160251793	.	A	.	.	PASS	END=160251855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	160251856	.	G	.	.	PASS	END=160251937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	160251938	.	A	.	.	PASS	END=160252000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	160252001	.	C	.	.	PASS	END=160252011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	160252012	.	T	.	.	PASS	END=160252041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	160252156	.	A	.	.	PASS	END=160252205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	160252206	.	C	.	.	PASS	END=160252299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	160252300	.	A	.	.	PASS	END=160252343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	160252683	.	A	.	.	PASS	END=160252715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	160252716	.	T	.	.	PASS	END=160252725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	160252726	.	C	.	.	PASS	END=160252728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	160252729	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:65:60
chr1	160252730	.	T	.	.	PASS	END=160252731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:96:60
chr1	160252732	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:66:60
chr1	160252733	.	C	.	.	PASS	END=160252740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	160252741	.	C	.	.	PASS	END=160252742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	160252743	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:45:60
chr1	160252744	.	T	.	.	PASS	END=160252773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:88:60
chr1	160252774	.	C	.	.	PASS	END=160252800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	160252801	.	C	.	.	PASS	END=160252830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	160252831	.	G	.	.	PASS	END=160252920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	160252921	.	A	.	.	PASS	END=160252950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	160253269	.	A	.	.	PASS	END=160253276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	160253277	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:68:60
chr1	160253278	.	T	.	.	PASS	END=160253311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	160253312	.	A	.	.	PASS	END=160253338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	160253339	.	G	.	.	PASS	END=160253364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	160253365	.	A	.	.	PASS	END=160253435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	160253436	.	A	.	.	PASS	END=160253480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	160253876	.	C	.	.	LowGQX	END=160253886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	160253887	.	T	.	.	LowGQX	END=160253888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	160253889	.	C	.	.	LowGQX	END=160253895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	160253896	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	160253897	.	A	.	.	LowGQX	END=160253903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	160253904	.	A	.	.	LowGQX	END=160253924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160253925	.	C	.	.	LowGQX	.	GT	./.
chr1	160253926	.	T	.	.	LowGQX	END=160253930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160253931	.	G	.	.	LowGQX	.	GT	./.
chr1	160253932	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160253933	.	T	.	.	LowGQX	END=160253934	GT	./.
chr1	160253935	.	C	.	.	LowGQX	END=160253950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160253951	.	T	.	.	LowGQX	.	GT	./.
chr1	160253952	.	C	.	.	LowGQX	END=160253958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160253959	.	T	.	.	LowGQX	.	GT	./.
chr1	160253960	.	C	.	.	LowGQX	END=160253968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160253969	.	A	.	.	LowGQX	.	GT	./.
chr1	160253970	.	G	.	.	LowGQX	END=160253975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160254794	.	A	.	.	PASS	END=160254824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	160254825	.	T	.	.	PASS	END=160254851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	160254852	.	A	.	.	PASS	END=160254936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	160254937	.	A	.	.	PASS	END=160254959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	160254960	.	C	.	.	PASS	END=160254965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	160259927	.	C	.	.	LowGQX	END=160260026	GT	./.
chr1	160260280	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260281	.	C	.	.	LowGQX	.	GT	./.
chr1	160260282	.	T	.	.	LowGQX	END=160260283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260284	.	T	.	.	LowGQX	END=160260285	GT	./.
chr1	160260286	.	G	.	.	LowGQX	END=160260290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260291	.	C	.	.	LowGQX	END=160260292	GT	./.
chr1	160260293	.	T	.	.	LowGQX	END=160260295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260296	.	A	.	.	LowGQX	.	GT	./.
chr1	160260297	.	G	.	.	LowGQX	END=160260298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260299	.	T	.	.	LowGQX	.	GT	./.
chr1	160260300	.	T	.	.	LowGQX	END=160260302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260303	.	A	.	.	LowGQX	END=160260304	GT	./.
chr1	160260305	.	C	.	.	LowGQX	END=160260306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260307	.	T	.	.	LowGQX	.	GT	./.
chr1	160260308	.	T	.	.	LowGQX	END=160260309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260310	.	A	.	.	LowGQX	.	GT	./.
chr1	160260311	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260312	.	C	.	.	LowGQX	.	GT	./.
chr1	160260313	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260314	.	C	.	.	LowGQX	END=160260319	GT	./.
chr1	160260320	.	A	.	.	LowGQX	END=160260327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260328	.	G	.	.	LowGQX	.	GT	./.
chr1	160260329	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260330	.	C	.	.	LowGQX	END=160260331	GT	./.
chr1	160260332	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260333	.	A	.	.	LowGQX	END=160260334	GT	./.
chr1	160260335	.	T	.	.	LowGQX	END=160260336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260337	.	A	.	.	LowGQX	.	GT	./.
chr1	160260338	.	G	.	.	LowGQX	END=160260339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260340	.	G	.	.	LowGQX	.	GT	./.
chr1	160260341	.	G	.	.	LowGQX	END=160260342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260343	.	C	.	.	LowGQX	END=160260344	GT	./.
chr1	160260345	.	C	.	.	LowGQX	END=160260347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260348	.	T	.	.	LowGQX	.	GT	./.
chr1	160260349	.	T	.	.	LowGQX	END=160260353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260354	.	T	.	.	LowGQX	.	GT	./.
chr1	160260355	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260356	.	G	.	.	LowGQX	.	GT	./.
chr1	160260357	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260358	.	T	.	.	LowGQX	END=160260359	GT	./.
chr1	160260360	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260361	.	C	.	.	LowGQX	END=160260363	GT	./.
chr1	160260364	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260365	.	G	.	.	LowGQX	.	GT	./.
chr1	160260366	.	G	.	.	LowGQX	END=160260369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260370	.	A	.	.	LowGQX	END=160260375	GT	./.
chr1	160260376	.	C	.	.	LowGQX	END=160260378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260379	.	T	.	.	LowGQX	END=160260381	GT	./.
chr1	160260382	.	G	.	.	LowGQX	END=160260383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160260384	.	T	.	.	LowGQX	.	GT	./.
chr1	160260385	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160260386	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	160260387	.	A	.	.	LowGQX	END=160260389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160260390	.	A	.	.	LowGQX	END=160260391	GT	./.
chr1	160260392	.	A	.	.	LowGQX	END=160260393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160260394	.	A	.	.	LowGQX	.	GT	./.
chr1	160260395	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160260396	.	G	.	.	LowGQX	END=160260397	GT	./.
chr1	160260398	.	C	.	.	LowGQX	END=160260401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160260402	.	G	.	.	LowGQX	END=160260403	GT	./.
chr1	160260404	.	G	.	.	LowGQX	END=160260405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160260406	.	T	.	.	LowGQX	.	GT	./.
chr1	160260407	.	T	.	.	LowGQX	END=160260408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160260409	.	T	.	.	LowGQX	END=160260410	GT	./.
chr1	160260411	.	C	.	.	LowGQX	END=160260413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160260414	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	160260415	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160260416	.	C	.	.	LowGQX	.	GT	./.
chr1	160260417	.	A	.	.	LowGQX	END=160260422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160260423	.	G	.	.	LowGQX	.	GT	./.
chr1	160260424	.	A	.	.	LowGQX	END=160260427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260428	.	G	.	.	LowGQX	.	GT	./.
chr1	160260429	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260430	.	T	.	.	LowGQX	.	GT	./.
chr1	160260431	.	A	.	.	LowGQX	END=160260435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260436	.	T	.	.	LowGQX	.	GT	./.
chr1	160260437	.	C	.	.	LowGQX	END=160260438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260439	.	G	.	.	LowGQX	END=160260441	GT	./.
chr1	160260442	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260443	.	G	.	.	LowGQX	END=160260444	GT	./.
chr1	160260445	.	T	.	.	LowGQX	END=160260447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260448	.	T	.	.	LowGQX	.	GT	./.
chr1	160260449	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260450	.	C	.	.	LowGQX	.	GT	./.
chr1	160260451	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260452	.	C	.	.	LowGQX	.	GT	./.
chr1	160260453	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260454	.	C	.	.	LowGQX	END=160260455	GT	./.
chr1	160260456	.	G	.	.	LowGQX	END=160260457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260458	.	C	.	.	LowGQX	END=160260460	GT	./.
chr1	160260461	.	A	.	.	LowGQX	END=160260462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260463	.	A	.	.	LowGQX	END=160260464	GT	./.
chr1	160260465	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260466	.	A	.	.	LowGQX	.	GT	./.
chr1	160260467	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260468	.	T	.	.	LowGQX	.	GT	./.
chr1	160260469	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260470	.	T	.	.	LowGQX	END=160260471	GT	./.
chr1	160260472	.	C	.	.	LowGQX	END=160260473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260474	.	G	.	.	LowGQX	.	GT	./.
chr1	160260475	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260476	.	T	.	.	LowGQX	.	GT	./.
chr1	160260477	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160260478	.	T	.	.	LowGQX	.	GT	./.
chr1	160261123	.	A	.	.	LowGQX	END=160261288	GT	./.
chr1	160261607	.	A	.	.	LowGQX	END=160261721	GT	./.
chr1	160261800	.	A	.	.	LowGQX	END=160261846	GT	./.
chr1	160261847	.	G	.	.	LowGQX	END=160261873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160261874	.	A	.	.	LowGQX	.	GT	./.
chr1	160261875	.	G	.	.	LowGQX	END=160261913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160261914	.	A	.	.	LowGQX	.	GT	./.
chr1	160261915	.	G	.	.	LowGQX	END=160261935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160261936	.	C	.	.	LowGQX	.	GT	./.
chr1	160261937	.	A	.	.	LowGQX	END=160261961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160261962	.	A	.	.	LowGQX	.	GT	./.
chr1	160261963	.	C	.	.	LowGQX	END=160261990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160262212	.	C	.	.	LowGQX	END=160262249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160262250	.	A	.	.	LowGQX	END=160262320	GT	./.
chr1	160262321	.	C	.	.	LowGQX	END=160262364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160262365	.	G	.	.	LowGQX	.	GT	./.
chr1	160262366	.	C	.	.	LowGQX	END=160262403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160262404	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	160262405	.	A	.	.	LowGQX	END=160262412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160262941	.	G	.	.	LowGQX	END=160263040	GT	./.
chr1	160263104	.	A	.	.	LowGQX	END=160263264	GT	./.
chr1	160264272	.	A	.	.	LowGQX	END=160264385	GT	./.
chr1	160264553	.	T	.	.	LowGQX	END=160264652	GT	./.
chr1	160265524	.	A	.	.	LowGQX	END=160265540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160265541	.	T	.	.	LowGQX	.	GT	./.
chr1	160265542	.	G	.	.	LowGQX	END=160265589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160265590	.	C	.	.	LowGQX	.	GT	./.
chr1	160265591	.	A	.	.	LowGQX	END=160265613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160265614	.	C	.	.	LowGQX	END=160265616	GT	./.
chr1	160265617	.	G	.	.	LowGQX	END=160265638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160265639	.	A	.	.	LowGQX	.	GT	./.
chr1	160265640	.	T	.	.	LowGQX	END=160265651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160265846	.	C	.	.	LowGQX	END=160265945	GT	./.
chr1	160267131	.	A	.	.	LowGQX	END=160267144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160267145	.	T	.	.	LowGQX	END=160267230	GT	./.
chr1	160267344	.	A	.	.	LowGQX	END=160267537	GT	./.
chr1	160268633	.	A	.	.	LowGQX	END=160268783	GT	./.
chr1	160268890	.	A	.	.	LowGQX	END=160269056	GT	./.
chr1	160275221	.	A	.	.	LowGQX	END=160275390	GT	./.
chr1	160275471	.	G	.	.	LowGQX	END=160275570	GT	./.
chr1	160276142	.	A	.	.	LowGQX	END=160276320	GT	./.
chr1	160276945	.	T	.	.	LowGQX	END=160277044	GT	./.
chr1	160278879	.	A	.	.	LowGQX	END=160278978	GT	./.
chr1	160279966	.	T	.	.	LowGQX	END=160280065	GT	./.
chr1	160281656	.	A	.	.	LowGQX	END=160281810	GT	./.
chr1	160282867	.	G	.	.	LowGQX	END=160282966	GT	./.
chr1	160283778	.	A	.	.	LowGQX	END=160283846	GT	./.
chr1	160283847	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160283848	.	G	.	.	LowGQX	END=160283850	GT	./.
chr1	160283851	.	G	.	.	LowGQX	END=160283854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160283855	.	A	.	.	LowGQX	.	GT	./.
chr1	160283856	.	C	.	.	LowGQX	END=160283862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160283863	.	A	.	.	LowGQX	.	GT	./.
chr1	160283864	.	G	.	.	LowGQX	END=160283866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160283867	.	A	.	.	LowGQX	.	GT	./.
chr1	160283868	.	C	.	.	LowGQX	END=160283869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160283870	.	T	.	.	LowGQX	.	GT	./.
chr1	160283871	.	T	.	.	LowGQX	END=160283879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160283880	.	G	.	.	LowGQX	.	GT	./.
chr1	160283881	.	G	.	.	LowGQX	END=160283886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160283887	.	G	.	.	LowGQX	.	GT	./.
chr1	160283888	.	C	.	.	LowGQX	END=160283891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160283892	.	T	.	.	LowGQX	END=160283893	GT	./.
chr1	160283894	.	T	.	.	LowGQX	END=160283895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160283896	.	A	.	.	LowGQX	.	GT	./.
chr1	160283897	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160283898	.	C	.	.	LowGQX	.	GT	./.
chr1	160283899	.	C	.	.	LowGQX	END=160283902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160283903	.	C	.	.	LowGQX	END=160283905	GT	./.
chr1	160283906	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160283907	.	C	.	.	LowGQX	END=160283909	GT	./.
chr1	160283910	.	T	.	.	LowGQX	END=160283912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160283913	.	A	.	.	LowGQX	END=160283914	GT	./.
chr1	160283915	.	T	.	.	LowGQX	END=160283917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160293219	.	A	.	.	LowGQX	END=160293322	GT	./.
chr1	160295331	.	A	.	.	LowGQX	END=160295444	GT	./.
chr1	160302236	.	A	.	.	LowGQX	END=160302349	GT	./.
chr1	160303382	.	T	.	.	LowGQX	END=160303408	GT	./.
chr1	160303409	.	A	.	.	LowGQX	END=160303415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160303416	.	G	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	160303417	.	T	.	.	LowGQX	END=160303451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160303452	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	160303453	.	A	.	.	LowGQX	END=160303481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160305023	.	A	.	.	LowGQX	END=160305122	GT	./.
chr1	160309686	.	A	.	.	LowGQX	END=160309785	GT	./.
chr1	160309969	.	A	.	.	LowGQX	END=160309971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160309972	.	A	.	.	LowGQX	.	GT	./.
chr1	160309973	.	T	.	.	LowGQX	END=160309982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160309983	.	C	.	.	LowGQX	END=160309984	GT	./.
chr1	160309985	.	A	.	.	LowGQX	END=160309998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160309999	.	A	.	.	LowGQX	.	GT	./.
chr1	160310000	.	G	.	.	LowGQX	END=160310013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160310014	.	G	.	.	LowGQX	END=160310086	GT	./.
chr1	160312891	.	C	.	.	LowGQX	END=160312899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	160312900	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	160312901	.	C	.	.	LowGQX	END=160312919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	160312920	.	C	.	.	LowGQX	END=160312925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	160312926	.	A	.	36	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.01:60:6
chr1	160312927	.	C	.	.	LowGQX	END=160312928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	160312929	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	160312930	.	G	.	.	LowGQX	END=160312931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	160312932	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	160312933	.	C	.	.	LowGQX	END=160312935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	160312936	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	160312937	.	C	.	.	LowGQX	END=160312938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	160312939	.	T	.	.	LowGQX	END=160312941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	160312942	.	T	.	.	LowGQX	END=160312967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	160312968	.	G	.	.	LowGQX	END=160312974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	160312975	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	160312976	.	C	.	.	LowGQX	END=160312980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	160312981	.	A	.	.	LowGQX	END=160312982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	160312983	.	G	.	.	LowGQX	END=160312984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	160312985	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	160312986	.	T	.	.	LowGQX	END=160312990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	160313136	.	C	.	.	PASS	END=160313155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	160313156	.	A	.	.	PASS	END=160313157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:60:60
chr1	160313158	.	C	.	.	PASS	END=160313182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	160313183	.	C	.	.	PASS	END=160313206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	160313207	.	C	.	.	PASS	END=160313261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	160313262	.	C	.	.	PASS	END=160313322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	160313494	.	G	.	.	PASS	END=160313496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	160313497	.	T	.	.	PASS	END=160313503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	160313504	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	160313505	.	G	.	.	PASS	END=160313507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	160313508	.	T	.	.	LowGQX	END=160313511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	160313512	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	160313513	.	G	.	.	LowGQX	END=160313526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	160313527	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:60
chr1	160313528	.	A	.	.	LowGQX	END=160313531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	160313532	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	160313533	.	G	.	.	LowGQX	END=160313541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	160313542	.	T	.	.	LowGQX	END=160313562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	160313563	.	A	.	.	LowGQX	END=160313587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160313588	.	A	.	.	LowGQX	END=160313593	GT	./.
chr1	160314342	.	A	.	.	PASS	END=160314347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:74:60
chr1	160314348	.	T	.	.	PASS	END=160314369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	160314370	.	A	.	.	PASS	END=160314402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	160314403	.	A	.	.	PASS	END=160314435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	160314436	.	C	.	.	PASS	END=160314441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	160314461	.	C	.	.	PASS	END=160314604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	160314605	.	T	.	.	PASS	END=160314639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	160314640	.	T	.	.	PASS	END=160314659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	160314660	.	T	.	.	PASS	END=160314667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	160318738	.	T	.	.	PASS	END=160318821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	160318822	.	T	.	.	PASS	END=160318850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	160318851	.	G	.	.	PASS	END=160318882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	160318883	.	G	.	.	PASS	END=160318899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	160318900	.	A	.	.	PASS	END=160318936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	160318937	.	G	.	.	PASS	END=160318939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	160318940	.	A	G	500.94	PASS	BaseQRankSum=0.406;DP=36;Dels=0.00;FS=3.643;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-0.438;QD=13.91;ReadPosRankSum=-2.677;SB=-270.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:14,22:36:99:531,0,353:60:99:0.611
chr1	160318941	.	A	.	.	PASS	END=160318961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	160318962	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:56:60
chr1	160318963	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:84:60
chr1	160319258	.	T	.	.	PASS	END=160319287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	160319288	.	G	.	.	PASS	END=160319292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	160319293	.	C	.	.	PASS	END=160319413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	160319414	.	T	.	.	PASS	END=160319439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	160319440	.	A	.	.	PASS	END=160319448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	160319449	.	A	.	.	PASS	END=160319476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	160319477	.	A	.	.	PASS	END=160319495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	160319496	.	A	.	.	PASS	END=160319511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	160319844	.	G	.	.	PASS	END=160319897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	160319898	.	T	.	.	PASS	END=160319971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	160319972	.	G	.	.	PASS	END=160320039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	160320040	.	G	.	.	PASS	END=160320059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	160320060	.	C	.	.	PASS	END=160320091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	160320961	.	G	.	.	PASS	END=160320986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	160320987	.	C	.	.	PASS	END=160321095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	160321096	.	G	.	.	PASS	END=160321123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	160321124	.	G	.	.	PASS	END=160321156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	160321157	.	A	.	.	PASS	END=160321179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	160321180	.	C	.	.	PASS	END=160321193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	160321194	.	A	.	.	PASS	END=160321213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	160321435	.	C	.	.	PASS	END=160321469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	160321470	.	T	.	.	PASS	END=160321545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	160321546	.	C	.	.	PASS	END=160321613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	160321614	.	T	.	.	PASS	END=160321646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	160321793	.	G	.	.	PASS	END=160321815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	160321816	.	C	.	.	PASS	END=160321868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:85:60
chr1	160321869	.	A	.	.	PASS	END=160321979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	160321980	.	T	.	.	PASS	END=160322025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	160322026	.	C	.	.	PASS	END=160322047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	160322626	.	C	.	.	PASS	END=160322654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr1	160322655	.	C	.	.	PASS	END=160322709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:96:60
chr1	160322710	.	G	.	.	PASS	END=160322791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	160322792	.	T	.	.	PASS	END=160322832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	160322899	.	G	.	.	PASS	END=160322977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	160322978	.	G	.	.	PASS	END=160323033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	160323034	.	T	.	.	PASS	END=160323066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	160323067	.	T	.	.	PASS	END=160323078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	160323857	.	T	.	.	PASS	END=160323871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:81:60
chr1	160323872	.	A	.	120.27	PASS	DP=85;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:66:85:90.28:60:90
chr1	160323873	.	G	.	.	PASS	END=160323879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	160323880	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:90:65:60
chr1	160323881	.	T	.	.	PASS	END=160323893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	160323894	.	C	.	.	PASS	END=160323952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	160323953	.	C	.	.	PASS	END=160323994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	160323995	.	C	.	.	PASS	END=160324090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	160324091	.	C	.	.	PASS	END=160324122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	160324123	.	A	.	.	PASS	END=160324131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	160325394	.	G	.	.	PASS	END=160325409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	160325410	.	A	.	.	PASS	END=160325476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	160325477	.	A	.	.	PASS	END=160325564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	160325565	.	T	.	.	PASS	END=160325598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	160325602	.	A	.	.	PASS	END=160325690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	160325691	.	G	.	.	PASS	END=160325766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	160325767	.	G	.	.	PASS	END=160325799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	160325999	.	T	.	.	PASS	END=160326065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	160326066	.	A	.	.	PASS	END=160326105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	160326106	.	T	.	.	PASS	END=160326134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	160326135	.	T	.	.	PASS	END=160326161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	160326162	.	A	.	.	PASS	END=160326187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:91:60
chr1	160326188	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:99:60
chr1	160326339	.	T	.	.	PASS	END=160326362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	160326363	.	C	.	.	PASS	END=160326409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	160326410	.	T	.	.	PASS	END=160326503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	160326504	.	A	.	.	PASS	END=160326559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	160326560	.	T	.	.	PASS	END=160326570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	160326571	.	C	.	.	PASS	END=160326587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	160326588	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:36:60
chr1	160326589	.	T	.	.	PASS	END=160326595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	160326780	.	A	.	.	PASS	END=160326795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	160326796	.	C	.	.	PASS	END=160326804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	160326805	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:73:60
chr1	160326806	.	G	.	.	PASS	END=160326820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	160326821	.	T	.	.	PASS	END=160326839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	160326840	.	T	.	.	PASS	END=160326978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	160326979	.	G	.	.	PASS	END=160327051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	160327052	.	G	.	.	PASS	END=160327067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	160327068	.	G	.	.	PASS	END=160327087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	160327088	.	C	.	.	PASS	END=160327094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	160327888	.	A	.	.	PASS	END=160327907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	160327908	.	T	.	.	PASS	END=160327926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	160327927	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:45:60
chr1	160327928	.	T	.	.	PASS	END=160327967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	160327968	.	C	.	.	PASS	END=160328065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	160328066	.	G	.	.	PASS	END=160328101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	160328102	.	C	.	.	PASS	END=160328112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	160340509	.	G	.	.	LowGQX	END=160340925	GT	./.
chr1	160385577	.	A	.	.	PASS	END=160385581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	160385582	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:46:60
chr1	160385583	.	C	.	.	PASS	END=160385585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:60
chr1	160385586	.	C	.	.	PASS	END=160385591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	160385592	.	G	.	.	PASS	END=160385602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	160385603	.	C	.	.	PASS	END=160385624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	160385625	.	G	.	.	PASS	END=160385671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	160385672	.	C	.	.	PASS	END=160385749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	160385801	.	A	.	.	PASS	END=160385844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	160385845	.	G	.	.	PASS	END=160385933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	160385934	.	C	.	.	PASS	END=160385980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	160385981	.	T	.	.	PASS	END=160386011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	160386012	.	C	.	.	PASS	END=160386023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	160388741	.	T	.	.	PASS	END=160388747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	160388748	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:75:60
chr1	160388749	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:36:60
chr1	160388750	.	C	.	.	PASS	END=160388753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	160388754	.	T	.	.	PASS	END=160388757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	160388758	.	C	.	.	PASS	END=160388762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	160388763	.	T	.	.	PASS	END=160388779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	160388780	.	T	.	.	PASS	END=160388810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	160388811	.	C	.	.	PASS	END=160388831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	160388832	.	C	.	.	PASS	END=160388858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	160388859	.	A	.	.	PASS	END=160388883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	160388884	.	G	.	.	PASS	END=160388896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	160388897	.	C	.	.	PASS	END=160388989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	160388990	.	C	.	.	PASS	END=160389050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:253:99:60
chr1	160389051	.	C	.	.	PASS	END=160389179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:327:99:60
chr1	160389180	.	T	.	.	PASS	END=160389201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:291:99:60
chr1	160389202	.	T	.	.	PASS	END=160389226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	160389227	.	C	.	.	PASS	END=160389248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	160389249	.	A	.	.	PASS	END=160389297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	160389298	.	C	.	.	PASS	END=160389314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	160389315	.	T	.	.	PASS	END=160389348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	160389349	.	C	.	.	PASS	END=160389382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	160389383	.	A	.	.	PASS	END=160389408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	160389409	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:42:60
chr1	160389410	.	A	.	.	PASS	END=160389414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	160389415	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:66:60
chr1	160389416	.	G	.	.	PASS	END=160389424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	160389425	.	T	.	.	PASS	END=160389426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	160389427	.	G	.	.	PASS	END=160389441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	160389442	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:48:60
chr1	160389443	.	G	.	.	PASS	END=160389449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	160389450	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:48:60
chr1	160390150	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:33:60
chr1	160390151	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:45:60
chr1	160390152	.	C	.	.	PASS	END=160390154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:33:60
chr1	160390155	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	160390156	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:30:60
chr1	160390157	.	T	.	.	PASS	END=160390160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	160390161	.	C	.	.	PASS	END=160390162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:30:60
chr1	160390163	.	G	.	.	PASS	END=160390170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:33:60
chr1	160390171	.	T	.	.	PASS	END=160390172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:60
chr1	160390173	.	C	.	.	PASS	END=160390174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chr1	160390175	.	A	.	17.69	LowGQX	DP=18;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:13:18:0.24:60:0
chr1	160390176	.	C	.	.	PASS	END=160390179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chr1	160390180	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:42:60
chr1	160390181	.	T	.	48.05	LowGQX	DP=18;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:13:18:18.06:60:18
chr1	160390182	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:21:60
chr1	160390183	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:42:60
chr1	160390184	.	T	.	51.05	LowGQX	DP=17;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:13:17:21.05:60:21
chr1	160390185	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:60
chr1	160390186	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr1	160390187	.	C	.	.	PASS	END=160390188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	160390189	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:24:60
chr1	160390190	.	C	.	.	PASS	END=160390191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:60
chr1	160390192	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:36:60
chr1	160390193	.	C	.	.	PASS	END=160390195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:60
chr1	160390196	.	C	.	.	PASS	END=160390199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:47:60
chr1	160390200	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:45:60
chr1	160390201	.	C	.	.	PASS	END=160390204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr1	160390205	.	C	.	.	PASS	END=160390213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr1	160390214	.	G	.	.	PASS	END=160390232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:75:60
chr1	160390233	.	A	.	.	PASS	END=160390255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	160390256	.	T	.	.	PASS	END=160390346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	160390347	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:64:72:60
chr1	160390348	.	C	.	.	PASS	END=160390352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	160390353	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:59:21:60
chr1	160390354	.	C	.	.	PASS	END=160390361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:75:60
chr1	160390362	.	T	.	.	PASS	END=160390388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:63:60
chr1	160390791	.	A	.	.	PASS	END=160390807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	160390808	.	A	.	.	PASS	END=160390828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr1	160390829	.	T	.	.	PASS	END=160390932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:280:99:60
chr1	160390933	.	T	.	.	PASS	END=160390947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr1	160390948	.	T	.	.	PASS	END=160390962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	160390963	.	C	.	.	PASS	END=160390970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	160390971	.	G	.	.	PASS	END=160390990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	160390991	.	G	.	.	PASS	END=160391015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	160391016	.	T	.	.	PASS	END=160391028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	160393791	.	G	.	.	PASS	END=160393817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	160393818	.	G	.	.	PASS	END=160393822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	160393823	.	G	.	.	PASS	END=160393840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	160393841	.	G	.	.	PASS	END=160393874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	160393875	.	C	.	.	PASS	END=160393904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	160393905	.	A	G	3343.11	PASS	BaseQRankSum=-0.137;DP=127;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=13.3624;MQ=60;MQ0=0;MQRankSum=1.677;QD=26.32;ReadPosRankSum=-1.650;SB=-1731.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,125:127:99:3343,214,0:60:99:0.992
chr1	160393906	.	A	.	.	PASS	END=160393983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	160393984	.	C	.	.	PASS	END=160394022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	160394023	.	A	.	.	PASS	END=160394037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	160394038	.	C	.	.	PASS	END=160394066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	160394067	.	G	.	.	PASS	END=160394072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	160394073	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:58:60
chr1	160394074	.	G	.	.	PASS	END=160394080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	160394081	.	T	.	.	PASS	END=160394083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	160394084	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:36:60
chr1	160394085	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:87:60
chr1	160394086	.	T	.	.	PASS	END=160394091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	160394092	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:21:60
chr1	160394093	.	A	.	.	PASS	END=160394112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	160394113	.	A	.	.	PASS	END=160394116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	160394117	.	C	.	.	PASS	END=160394121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	160394122	.	T	.	.	PASS	END=160394124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	160394857	.	A	.	.	PASS	END=160394866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	160394867	.	G	.	.	PASS	END=160394891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	160394892	.	C	.	.	PASS	END=160394918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	160394919	.	G	.	.	PASS	END=160394936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	160394937	.	A	C	1484.64	PASS	BaseQRankSum=1.159;DP=102;Dels=0.00;FS=6.616;HRun=2;HaplotypeScore=16.4033;MQ=60;MQ0=0;MQRankSum=-1.656;QD=14.56;ReadPosRankSum=0.235;SB=-399.83	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,60:102:99:1515,0,769:60:99:0.588
chr1	160394938	.	C	.	.	PASS	END=160394954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	160394955	.	C	.	.	PASS	END=160394989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	160394990	.	T	.	.	PASS	END=160395002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	160395003	.	G	A	2282.33	PASS	BaseQRankSum=3.681;DP=178;Dels=0.00;FS=0.588;HRun=0;HaplotypeScore=26.6192;MQ=60;MQ0=0;MQRankSum=0.122;QD=12.82;ReadPosRankSum=0.954;SB=-943.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:91,87:178:99:2312,0,2207:60:99:0.489
chr1	160395004	.	G	.	.	PASS	END=160395094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	160395095	.	A	.	.	PASS	END=160395119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	160395120	.	C	.	.	PASS	END=160395139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	160395140	.	T	.	.	PASS	END=160395158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	160395159	.	C	.	.	PASS	END=160395169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	160395170	.	T	.	.	PASS	END=160395179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	160395180	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:48:60
chr1	160395181	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:66:60
chr1	160395182	.	G	.	.	PASS	END=160395186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	160395187	.	A	.	.	PASS	END=160395188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	160395189	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:60
chr1	160395190	.	G	.	.	PASS	END=160395194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	160395195	.	A	.	.	PASS	END=160395196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	160395197	.	T	.	.	PASS	END=160395203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	160395204	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	160395205	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	160395206	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:9:60
chr1	160395207	.	C	.	.	LowGQX	END=160395213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	160395214	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	160395215	.	G	.	.	LowGQX	END=160395219	GT	./.
chr1	160456471	.	G	.	.	LowGQX	END=160456472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160456473	.	A	.	.	LowGQX	.	GT	./.
chr1	160456474	.	T	.	.	LowGQX	END=160456490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160456491	.	A	.	.	LowGQX	END=160456492	GT	./.
chr1	160456493	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160456494	.	A	.	.	LowGQX	.	GT	./.
chr1	160456495	.	A	.	.	LowGQX	END=160456503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160456504	.	A	.	.	LowGQX	.	GT	./.
chr1	160456505	.	C	.	.	LowGQX	END=160456507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160456508	.	T	.	.	LowGQX	.	GT	./.
chr1	160456509	.	G	.	.	LowGQX	END=160456517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160456518	.	A	.	.	LowGQX	END=160456570	GT	./.
chr1	160456822	.	A	.	.	LowGQX	END=160456979	GT	./.
chr1	160458869	.	A	.	.	LowGQX	END=160458968	GT	./.
chr1	160459949	.	T	.	.	LowGQX	END=160460048	GT	./.
chr1	160460363	.	G	.	.	LowGQX	END=160460477	GT	./.
chr1	160460892	.	T	.	.	LowGQX	END=160461115	GT	./.
chr1	160461116	.	G	.	.	LowGQX	END=160461178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160461179	.	C	.	.	LowGQX	.	GT	./.
chr1	160461180	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160465849	.	A	.	.	LowGQX	END=160466185	GT	./.
chr1	160492842	.	C	.	.	LowGQX	END=160492923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160492924	.	T	.	.	LowGQX	END=160493008	GT	./.
chr1	160518029	.	G	.	.	LowGQX	END=160518096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160518097	.	G	.	.	LowGQX	END=160518128	GT	./.
chr1	160519689	.	A	.	.	LowGQX	END=160519788	GT	./.
chr1	160520726	.	A	.	.	LowGQX	END=160520885	GT	./.
chr1	160522461	.	T	.	.	LowGQX	END=160522489	GT	./.
chr1	160522490	.	C	.	.	LowGQX	END=160522560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160523084	.	T	.	.	LowGQX	END=160523218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160523219	.	C	.	.	LowGQX	END=160523289	GT	./.
chr1	160523598	.	C	.	.	LowGQX	END=160523938	GT	./.
chr1	160535192	.	A	.	.	LowGQX	END=160535537	GT	./.
chr1	160549155	.	A	.	.	LowGQX	END=160549254	GT	./.
chr1	160580050	.	G	.	.	LowGQX	END=160580149	GT	./.
chr1	160580514	.	A	.	.	LowGQX	END=160580570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160580571	.	T	.	.	LowGQX	END=160580613	GT	./.
chr1	160582275	.	C	.	.	LowGQX	END=160582374	GT	./.
chr1	160585492	.	C	.	.	LowGQX	END=160585591	GT	./.
chr1	160589553	.	A	.	.	LowGQX	END=160589652	GT	./.
chr1	160593881	.	C	.	.	LowGQX	END=160593954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160593955	.	A	.	.	LowGQX	END=160594033	GT	./.
chr1	160604401	.	A	.	.	LowGQX	END=160604519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160604520	.	A	.	.	LowGQX	END=160604689	GT	./.
chr1	160606949	.	T	.	.	LowGQX	END=160607205	GT	./.
chr1	160607206	.	C	.	.	LowGQX	END=160607219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160607220	.	C	.	.	LowGQX	.	GT	./.
chr1	160607221	.	T	.	.	LowGQX	END=160607233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160607234	.	C	.	.	LowGQX	.	GT	./.
chr1	160607235	.	T	.	.	LowGQX	END=160607291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160607292	.	A	.	.	LowGQX	END=160607293	GT	./.
chr1	160607294	.	C	.	.	LowGQX	END=160607317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160607318	.	A	.	.	LowGQX	.	GT	./.
chr1	160607319	.	C	.	.	LowGQX	END=160607321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160616648	.	A	.	.	LowGQX	END=160616747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	160648832	.	A	.	.	LowGQX	END=160648931	GT	./.
chr1	160650884	.	T	.	.	LowGQX	END=160650896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160650897	.	T	.	.	LowGQX	END=160651260	GT	./.
chr1	160654551	.	A	.	.	LowGQX	END=160654592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160654593	.	T	.	.	LowGQX	END=160654919	GT	./.
chr1	160654920	.	T	.	.	LowGQX	END=160654981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160681463	.	G	.	.	LowGQX	END=160681562	GT	./.
chr1	160709010	.	T	.	.	LowGQX	END=160709045	GT	./.
chr1	160709046	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160709047	.	A	.	.	LowGQX	.	GT	./.
chr1	160709048	.	G	.	.	LowGQX	END=160709059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160709060	.	T	.	.	LowGQX	.	GT	./.
chr1	160709061	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160709062	.	C	.	.	LowGQX	.	GT	./.
chr1	160709063	.	A	.	.	LowGQX	END=160709066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160709067	.	C	.	.	LowGQX	.	GT	./.
chr1	160709068	.	A	.	.	LowGQX	END=160709073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160709074	.	T	.	.	LowGQX	.	GT	./.
chr1	160709075	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160709076	.	A	.	.	LowGQX	.	GT	./.
chr1	160709077	.	C	.	.	LowGQX	END=160709084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160709085	.	G	.	.	LowGQX	.	GT	./.
chr1	160709086	.	A	.	.	LowGQX	END=160709093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160709094	.	G	.	.	LowGQX	.	GT	./.
chr1	160709095	.	G	.	.	LowGQX	END=160709096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160709097	.	T	.	.	LowGQX	.	GT	./.
chr1	160709098	.	G	.	.	LowGQX	END=160709099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160709100	.	T	.	.	LowGQX	.	GT	./.
chr1	160709101	.	T	.	.	LowGQX	END=160709138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160709139	.	G	.	.	LowGQX	.	GT	./.
chr1	160709140	.	C	.	.	LowGQX	END=160709147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160709148	.	T	.	.	LowGQX	.	GT	./.
chr1	160709149	.	G	.	.	LowGQX	END=160709169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160717982	.	A	.	.	LowGQX	END=160718306	GT	./.
chr1	160719609	.	A	.	.	LowGQX	END=160719680	GT	./.
chr1	160719681	.	G	.	.	LowGQX	END=160719825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160719826	.	A	.	.	LowGQX	END=160719922	GT	./.
chr1	160720092	.	A	.	.	LowGQX	END=160720113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	160720114	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	160720115	.	C	.	.	LowGQX	END=160720132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	160720133	.	G	.	13.53	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.09:60:0
chr1	160720134	.	T	.	.	LowGQX	END=160720139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	160720140	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	160720141	.	T	.	.	LowGQX	END=160720159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	160720160	.	G	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	160720161	.	T	.	.	LowGQX	END=160720175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	160720176	.	G	.	.	LowGQX	END=160720187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160720188	.	G	.	.	LowGQX	.	GT	./.
chr1	160720189	.	T	.	.	LowGQX	END=160720202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160720203	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	160720204	.	A	.	.	LowGQX	END=160720206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160720207	.	C	.	.	LowGQX	.	GT	./.
chr1	160720208	.	A	.	.	LowGQX	END=160720213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160720214	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	160720215	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160721133	.	A	.	.	LowGQX	END=160721240	GT	./.
chr1	160721958	.	G	.	.	LowGQX	END=160721997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160721998	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	160721999	.	A	.	.	LowGQX	END=160722009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160722010	.	T	.	.	LowGQX	END=160722011	GT	./.
chr1	160722012	.	T	.	.	LowGQX	END=160722021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160722022	.	T	.	.	LowGQX	.	GT	./.
chr1	160722023	.	G	.	.	LowGQX	END=160722028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160722029	.	A	.	.	LowGQX	.	GT	./.
chr1	160722030	.	C	.	.	LowGQX	END=160722057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160722882	.	T	.	.	LowGQX	END=160722912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160722913	.	A	.	.	LowGQX	.	GT	./.
chr1	160722914	.	C	.	.	LowGQX	END=160722922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160722923	.	A	.	.	LowGQX	END=160722981	GT	./.
chr1	160765976	.	T	.	.	LowGQX	END=160766103	GT	./.
chr1	160769541	.	A	.	.	LowGQX	END=160769680	GT	./.
chr1	160769681	.	C	.	.	LowGQX	END=160769702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160769703	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	160769704	.	G	.	.	LowGQX	END=160769805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160769806	.	A	.	.	LowGQX	END=160769874	GT	./.
chr1	160771578	.	A	.	.	PASS	END=160771622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:85:60
chr1	160771623	.	C	.	.	PASS	END=160771709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	160783424	.	A	.	.	LowGQX	END=160783703	GT	./.
chr1	160784208	.	A	.	.	LowGQX	END=160784571	GT	./.
chr1	160784572	.	C	.	.	LowGQX	END=160784595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160786382	.	A	.	.	LowGQX	END=160786402	GT	./.
chr1	160786403	.	A	.	.	LowGQX	END=160786405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160786406	.	C	.	.	LowGQX	END=160786407	GT	./.
chr1	160786408	.	C	.	.	LowGQX	END=160786409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160786410	.	T	.	.	LowGQX	.	GT	./.
chr1	160786411	.	G	.	.	LowGQX	END=160786413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160786414	.	G	.	.	LowGQX	END=160786415	GT	./.
chr1	160786416	.	C	.	.	LowGQX	END=160786418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160786419	.	A	.	.	LowGQX	.	GT	./.
chr1	160786420	.	G	.	.	LowGQX	END=160786423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160786424	.	C	.	.	LowGQX	.	GT	./.
chr1	160786425	.	A	.	.	LowGQX	END=160786430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160786431	.	G	.	.	LowGQX	END=160786432	GT	./.
chr1	160786433	.	T	.	.	LowGQX	END=160786435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160786436	.	C	.	.	LowGQX	.	GT	./.
chr1	160786437	.	A	.	.	LowGQX	END=160786443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160786444	.	G	.	.	LowGQX	.	GT	./.
chr1	160786445	.	G	.	.	LowGQX	END=160786447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160786448	.	C	.	.	LowGQX	.	GT	./.
chr1	160786449	.	A	.	.	LowGQX	END=160786450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160786451	.	C	.	.	LowGQX	.	GT	./.
chr1	160786452	.	C	.	.	LowGQX	END=160786460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160786461	.	T	.	.	LowGQX	.	GT	./.
chr1	160786462	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160786463	.	C	.	.	LowGQX	END=160786464	GT	./.
chr1	160786465	.	T	.	.	LowGQX	END=160786486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160786487	.	C	.	.	LowGQX	.	GT	./.
chr1	160786488	.	A	.	.	LowGQX	END=160786492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160786493	.	C	.	.	LowGQX	END=160786494	GT	./.
chr1	160786495	.	C	.	.	LowGQX	END=160786496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160786497	.	T	.	.	LowGQX	.	GT	./.
chr1	160786498	.	G	.	.	LowGQX	END=160786532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160786533	.	G	.	.	LowGQX	.	GT	./.
chr1	160786534	.	G	.	.	LowGQX	END=160786538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160786539	.	T	.	.	LowGQX	.	GT	./.
chr1	160786540	.	C	.	.	LowGQX	END=160786552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160786553	.	C	.	.	LowGQX	END=160786655	GT	./.
chr1	160788006	.	A	.	.	LowGQX	END=160788014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160788015	.	G	.	.	LowGQX	.	GT	./.
chr1	160788016	.	A	.	.	LowGQX	END=160788020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160788021	.	C	.	.	LowGQX	.	GT	./.
chr1	160788022	.	A	.	.	LowGQX	END=160788028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160788029	.	T	.	.	LowGQX	END=160788111	GT	./.
chr1	160789088	.	C	.	.	LowGQX	END=160789187	GT	./.
chr1	160793253	.	A	.	.	LowGQX	END=160793400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160793401	.	A	.	.	LowGQX	END=160793588	GT	./.
chr1	160793956	.	G	.	.	LowGQX	END=160793961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160793962	.	G	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	160793963	.	T	.	.	LowGQX	END=160793971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160793972	.	G	.	.	LowGQX	.	GT	./.
chr1	160793973	.	A	.	.	LowGQX	END=160793978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160793979	.	C	.	.	LowGQX	.	GT	./.
chr1	160793980	.	C	.	.	LowGQX	END=160793995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160793996	.	A	.	.	LowGQX	.	GT	./.
chr1	160793997	.	A	.	.	LowGQX	END=160794007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160794008	.	C	.	.	LowGQX	END=160794009	GT	./.
chr1	160794010	.	A	.	.	LowGQX	END=160794021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160794022	.	T	.	.	LowGQX	.	GT	./.
chr1	160794023	.	C	.	.	LowGQX	END=160794040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160794041	.	T	.	.	LowGQX	.	GT	./.
chr1	160794042	.	G	.	.	LowGQX	END=160794055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160797523	.	A	.	.	LowGQX	END=160797622	GT	./.
chr1	160801128	.	C	.	.	PASS	END=160801170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	160801171	.	C	.	.	PASS	END=160801217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	160801218	.	C	.	.	PASS	END=160801227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	160802288	.	T	.	.	PASS	END=160802310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	160802311	.	C	.	.	PASS	END=160802387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	160802445	.	A	.	.	PASS	END=160802461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	160802462	.	A	.	.	PASS	END=160802476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	160802477	.	C	.	.	PASS	END=160802544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	160803824	.	C	.	.	PASS	END=160803862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	160803863	.	G	.	.	PASS	END=160803923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	160805965	.	T	.	.	PASS	END=160805997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	160805998	.	A	.	.	PASS	END=160806064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	160808225	.	C	.	.	PASS	END=160808247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	160808248	.	C	.	.	PASS	END=160808317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	160808318	.	G	.	.	PASS	END=160808324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	160808727	.	A	.	.	PASS	END=160808765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	160808766	.	G	.	.	PASS	END=160808841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	160810998	.	A	.	.	PASS	END=160811054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	160811055	.	A	.	.	PASS	END=160811134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	160811135	.	C	.	.	PASS	END=160811211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	160811212	.	A	.	.	PASS	END=160811290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	160811372	.	A	.	.	PASS	END=160811446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	160811447	.	A	.	.	PASS	END=160811498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	160811499	.	A	.	.	PASS	END=160811507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	160811508	.	C	.	.	PASS	END=160811616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	160811617	.	T	.	.	PASS	END=160811658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	160811659	.	T	.	.	PASS	END=160811684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:92:60
chr1	160811685	.	T	.	.	PASS	END=160811693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	160832388	.	C	.	.	PASS	END=160832465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	160832466	.	A	.	.	PASS	END=160832487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	160846452	.	T	.	.	LowGQX	END=160846608	GT	./.
chr1	160849099	.	A	.	.	LowGQX	END=160849206	GT	./.
chr1	160850376	.	A	.	.	LowGQX	END=160850500	GT	./.
chr1	160850942	.	A	.	.	LowGQX	END=160851104	GT	./.
chr1	160851730	.	T	.	.	LowGQX	END=160851996	GT	./.
chr1	160853216	.	A	.	.	LowGQX	END=160853250	GT	./.
chr1	160853251	.	T	.	.	LowGQX	END=160853252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160853253	.	C	.	.	LowGQX	.	GT	./.
chr1	160853254	.	A	.	.	LowGQX	END=160853318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160854589	.	G	.	.	LowGQX	END=160854688	GT	./.
chr1	160914898	.	G	.	.	LowGQX	END=160915084	GT	./.
chr1	160917717	.	A	.	.	LowGQX	END=160917824	GT	./.
chr1	160919834	.	A	.	.	LowGQX	END=160919958	GT	./.
chr1	160920341	.	A	.	.	LowGQX	END=160920503	GT	./.
chr1	160920831	.	A	.	.	LowGQX	END=160921082	GT	./.
chr1	160922408	.	A	.	.	LowGQX	END=160922502	GT	./.
chr1	160922503	.	T	.	.	LowGQX	END=160922525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160924159	.	C	.	.	LowGQX	END=160924161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160924162	.	T	.	.	LowGQX	.	GT	./.
chr1	160924163	.	C	.	.	LowGQX	END=160924175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160924176	.	C	.	.	LowGQX	.	GT	./.
chr1	160924177	.	C	.	.	LowGQX	END=160924193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160924194	.	G	.	.	LowGQX	.	GT	./.
chr1	160924195	.	T	.	.	LowGQX	END=160924205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160924206	.	A	.	.	LowGQX	.	GT	./.
chr1	160924207	.	A	.	.	LowGQX	END=160924257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160924258	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr1	160924475	.	A	.	.	LowGQX	END=160924574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160968629	.	A	.	.	LowGQX	END=160968652	GT	./.
chr1	160968653	.	G	.	.	LowGQX	END=160968728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160968808	.	C	.	.	LowGQX	END=160968907	GT	./.
chr1	160969143	.	A	.	.	LowGQX	END=160969242	GT	./.
chr1	160969428	.	A	.	.	LowGQX	END=160969440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160969441	.	C	.	.	LowGQX	.	GT	./.
chr1	160969442	.	C	.	.	LowGQX	END=160969444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160969445	.	G	.	.	LowGQX	.	GT	./.
chr1	160969446	.	G	.	.	LowGQX	END=160969457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160969458	.	C	.	.	LowGQX	.	GT	./.
chr1	160969459	.	C	.	.	LowGQX	END=160969462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160969463	.	T	.	.	LowGQX	.	GT	./.
chr1	160969464	.	G	.	.	LowGQX	END=160969474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160969475	.	A	.	.	LowGQX	.	GT	./.
chr1	160969476	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160969477	.	A	.	.	LowGQX	.	GT	./.
chr1	160969478	.	T	.	.	LowGQX	END=160969491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	160969492	.	A	.	.	LowGQX	.	GT	./.
chr1	160969493	.	G	.	.	LowGQX	END=160969496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160969497	.	T	.	.	LowGQX	.	GT	./.
chr1	160969498	.	A	.	.	LowGQX	END=160969499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160969500	.	A	.	.	LowGQX	.	GT	./.
chr1	160969501	.	A	.	.	LowGQX	END=160969503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160969504	.	A	.	.	LowGQX	.	GT	./.
chr1	160969505	.	C	.	.	LowGQX	END=160969512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160969513	.	A	.	.	LowGQX	.	GT	./.
chr1	160969514	.	C	.	.	LowGQX	END=160969515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160969516	.	A	.	.	LowGQX	.	GT	./.
chr1	160969517	.	T	.	.	LowGQX	END=160969539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	160969664	.	A	.	.	LowGQX	END=160969770	GT	./.
chr1	160969934	.	A	.	.	LowGQX	END=160970140	GT	./.
chr1	160970419	.	A	.	.	LowGQX	END=160970569	GT	./.
chr1	160970808	.	A	.	.	LowGQX	END=160970919	GT	./.
chr1	160971060	.	C	.	.	LowGQX	END=160971159	GT	./.
chr1	160990728	.	G	.	.	LowGQX	END=160990881	GT	./.
chr1	161007541	.	G	.	.	LowGQX	END=161007640	GT	./.
chr1	161007668	.	A	.	.	LowGQX	END=161007865	GT	./.
chr1	161008340	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161008341	.	C	.	.	LowGQX	END=161008484	GT	./.
chr1	161008658	.	C	.	.	LowGQX	END=161008673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161008674	.	A	.	.	LowGQX	.	GT	./.
chr1	161008675	.	G	.	.	LowGQX	END=161008680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161008681	.	G	.	.	LowGQX	.	GT	./.
chr1	161008682	.	T	.	.	LowGQX	END=161008688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161008689	.	A	.	.	LowGQX	.	GT	./.
chr1	161008690	.	G	.	.	LowGQX	END=161008700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161008701	.	T	.	.	LowGQX	.	GT	./.
chr1	161008702	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161008703	.	T	.	.	LowGQX	.	GT	./.
chr1	161008704	.	C	.	.	LowGQX	END=161008709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161008710	.	T	.	.	LowGQX	.	GT	./.
chr1	161008711	.	G	.	.	LowGQX	END=161008717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161008718	.	T	.	.	LowGQX	.	GT	./.
chr1	161008719	.	G	.	.	LowGQX	END=161008729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161008730	.	T	.	.	LowGQX	.	GT	./.
chr1	161008731	.	C	.	.	LowGQX	END=161008746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161008747	.	T	.	.	LowGQX	.	GT	./.
chr1	161008748	.	C	.	.	LowGQX	END=161008750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161008751	.	G	.	.	LowGQX	.	GT	./.
chr1	161008752	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161008753	.	T	.	.	LowGQX	.	GT	./.
chr1	161008754	.	C	.	.	LowGQX	END=161008757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161009705	.	C	.	.	PASS	END=161009748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	161009749	.	G	.	.	PASS	END=161009804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	161009990	.	A	.	.	PASS	END=161010078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	161010079	.	C	.	.	PASS	END=161010122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	161010364	.	A	.	.	PASS	END=161010385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	161010386	.	C	.	.	PASS	END=161010463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	161010584	.	T	.	.	PASS	END=161010683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	161011108	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:33:59
chr1	161011109	.	C	.	.	PASS	END=161011112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:59
chr1	161011113	.	C	.	.	PASS	END=161011116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:59
chr1	161011117	.	G	.	.	PASS	END=161011125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:59
chr1	161011126	.	T	.	.	PASS	END=161011128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr1	161011129	.	G	.	.	PASS	END=161011178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	161011179	.	T	.	.	PASS	END=161011207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	161011439	.	A	.	.	PASS	END=161011623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	161011624	.	C	.	.	PASS	END=161011638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	161011904	.	A	.	.	PASS	END=161012002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	161012003	.	A	.	.	PASS	END=161012009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	161012343	.	A	.	.	PASS	END=161012397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	161012398	.	T	.	.	PASS	END=161012462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	161012598	.	T	.	.	PASS	END=161012634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	161012635	.	G	.	.	PASS	END=161012697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	161013012	.	C	.	.	PASS	END=161013076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	161013077	.	G	.	.	PASS	END=161013094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	161013095	.	T	.	.	PASS	END=161013111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	161016731	.	C	.	.	LowGQX	END=161016830	GT	./.
chr1	161016856	.	G	.	.	LowGQX	END=161016955	GT	./.
chr1	161017503	.	A	.	.	LowGQX	END=161017557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161017558	.	T	.	.	LowGQX	END=161017907	GT	./.
chr1	161017908	.	G	.	.	LowGQX	END=161017917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161017918	.	A	.	.	LowGQX	.	GT	./.
chr1	161017919	.	T	.	.	LowGQX	END=161018044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161018045	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	161018046	.	A	.	.	LowGQX	END=161018097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161018098	.	T	.	.	LowGQX	.	GT	./.
chr1	161018099	.	G	.	.	LowGQX	END=161018102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161018103	.	T	.	.	LowGQX	END=161018285	GT	./.
chr1	161018286	.	T	.	.	LowGQX	END=161018292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161018293	.	T	.	.	LowGQX	.	GT	./.
chr1	161018294	.	C	.	.	LowGQX	END=161018311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161018312	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	161018313	.	T	.	.	LowGQX	END=161018421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161018422	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	161018423	.	C	.	.	LowGQX	END=161018426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161018427	.	C	.	.	LowGQX	.	GT	./.
chr1	161018428	.	T	.	.	LowGQX	END=161018435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161018436	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	161018437	.	C	.	.	LowGQX	END=161018450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161018451	.	T	.	.	LowGQX	END=161019091	GT	./.
chr1	161019092	.	A	.	.	LowGQX	END=161019095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161019096	.	A	.	.	LowGQX	.	GT	./.
chr1	161019097	.	G	.	.	LowGQX	END=161019123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161019124	.	C	.	.	LowGQX	END=161019126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	161019212	.	A	.	.	LowGQX	END=161019222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	161019223	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	161019224	.	A	.	.	LowGQX	END=161019229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	161019230	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:3:60
chr1	161019231	.	G	.	.	LowGQX	END=161019259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	161019260	.	T	.	.	LowGQX	END=161019287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161019288	.	C	.	.	LowGQX	END=161019362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	161019363	.	G	.	.	LowGQX	END=161019370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161019371	.	A	.	.	LowGQX	.	GT	./.
chr1	161019372	.	A	.	.	LowGQX	END=161019376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161019377	.	T	.	.	LowGQX	.	GT	./.
chr1	161019378	.	C	.	.	LowGQX	END=161019438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161019439	.	T	.	.	LowGQX	END=161019481	GT	./.
chr1	161021102	.	A	.	.	LowGQX	END=161021507	GT	./.
chr1	161022065	.	C	.	.	LowGQX	END=161022164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161022228	.	A	.	.	LowGQX	END=161022259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161022260	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	161022261	.	C	.	.	LowGQX	END=161022306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161022307	.	T	.	.	LowGQX	END=161022335	GT	./.
chr1	161022414	.	A	.	.	LowGQX	END=161022421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161022422	.	T	.	.	LowGQX	.	GT	./.
chr1	161022423	.	C	.	.	LowGQX	END=161022537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161022538	.	T	.	.	LowGQX	.	GT	./.
chr1	161022539	.	G	.	.	LowGQX	END=161022582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161022583	.	A	.	.	LowGQX	END=161022589	GT	./.
chr1	161023046	.	A	.	.	LowGQX	END=161023177	GT	./.
chr1	161024154	.	A	.	.	LowGQX	END=161024265	GT	./.
chr1	161024405	.	T	.	.	LowGQX	END=161024504	GT	./.
chr1	161026176	.	A	.	.	LowGQX	END=161026324	GT	./.
chr1	161029402	.	A	.	.	LowGQX	END=161029508	GT	./.
chr1	161029957	.	G	.	.	LowGQX	END=161030056	GT	./.
chr1	161039316	.	A	.	.	LowGQX	END=161039416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161042400	.	C	.	.	PASS	END=161042405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	161042406	.	T	.	.	PASS	END=161042409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	161042410	.	A	.	.	PASS	END=161042411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	161042412	.	C	.	.	PASS	END=161042426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	161042427	.	C	.	.	PASS	END=161042444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	161042445	.	C	.	.	PASS	END=161042453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	161042454	.	G	.	.	PASS	END=161042490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	161042491	.	C	.	.	PASS	END=161042516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	161042517	.	A	.	.	PASS	END=161042599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	161042600	.	A	.	.	PASS	END=161042639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	161042640	.	C	.	.	PASS	END=161042652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	161042653	.	C	.	.	PASS	END=161042681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	161042682	.	A	.	.	PASS	END=161042689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	161042690	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:69:60
chr1	161042691	.	A	.	.	PASS	END=161042726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	161042964	.	A	.	.	PASS	END=161042992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	161042993	.	C	.	.	PASS	END=161043027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	161043028	.	C	.	.	PASS	END=161043079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	161043080	.	T	.	.	PASS	END=161043105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	161043106	.	C	.	.	PASS	END=161043122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	161043123	.	G	.	.	PASS	END=161043137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	161043138	.	C	.	.	PASS	END=161043140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	161043459	.	A	.	.	PASS	END=161043477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	161043478	.	C	.	.	PASS	END=161043501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	161043502	.	G	.	.	PASS	END=161043528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	161043529	.	T	.	.	PASS	END=161043625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	161043626	.	C	.	.	PASS	END=161043636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	161043956	.	C	.	.	PASS	END=161043976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	161043977	.	T	.	.	PASS	END=161043995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	161043996	.	C	.	.	PASS	END=161044023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	161044024	.	C	.	.	PASS	END=161044096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	161044097	.	A	.	.	PASS	END=161044101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	161044102	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:67:71:60
chr1	161044103	.	C	.	.	PASS	END=161044112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:94:60
chr1	161044113	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:69:60
chr1	161044114	.	C	.	.	PASS	END=161044124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	161044125	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:66:60
chr1	161044126	.	C	.	.	PASS	END=161044151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	161044152	.	C	.	.	PASS	END=161044166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	161044167	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:75:60
chr1	161044168	.	T	.	.	PASS	END=161044177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	161044178	.	C	.	.	PASS	END=161044190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	161044191	.	T	.	.	PASS	END=161044193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	161044194	.	A	.	.	PASS	END=161044200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	161044201	.	C	.	.	PASS	END=161044208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	161044209	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:39:60
chr1	161044210	.	C	.	.	PASS	END=161044212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	161044213	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:45:60
chr1	161044214	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:69:60
chr1	161044339	.	C	.	.	PASS	END=161044379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:82:60
chr1	161044380	.	G	.	.	PASS	END=161044416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	161044417	.	G	.	.	PASS	END=161044496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	161044497	.	A	.	.	PASS	END=161044529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	161044530	.	T	.	.	PASS	END=161044556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	161044557	.	A	.	.	PASS	END=161044573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	161044574	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:66:60
chr1	161044575	.	G	.	.	PASS	END=161044590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	161044591	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:75:60
chr1	161044592	.	G	.	.	PASS	END=161044600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	161046094	.	A	.	.	PASS	END=161046102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	161046103	.	A	.	.	PASS	END=161046137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:96:60
chr1	161046138	.	C	.	.	PASS	END=161046173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	161046174	.	C	.	.	PASS	END=161046199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	161046200	.	C	.	.	PASS	END=161046253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	161046254	.	C	.	.	PASS	END=161046296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	161046297	.	G	.	.	PASS	END=161046316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	161047192	.	A	.	.	PASS	END=161047202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:61
chr1	161047203	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:61
chr1	161047204	.	A	.	.	PASS	END=161047215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:61
chr1	161047216	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:57:61
chr1	161047217	.	C	.	.	PASS	END=161047220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:61
chr1	161047221	.	A	.	.	PASS	END=161047227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:61
chr1	161047228	.	C	.	.	PASS	END=161047237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:61
chr1	161047238	.	C	.	.	PASS	END=161047250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:61
chr1	161047251	.	T	.	.	PASS	END=161047273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	161047274	.	G	.	.	PASS	END=161047289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:90:60
chr1	161047290	.	G	.	.	PASS	END=161047307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	161047308	.	G	.	.	PASS	END=161047360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	161047361	.	G	.	.	PASS	END=161047417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	161047418	.	C	.	.	PASS	END=161047449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	161047450	.	C	.	.	PASS	END=161047462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	161047463	.	G	.	.	PASS	END=161047483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:96:60
chr1	161047484	.	C	.	.	PASS	END=161047500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	161047501	.	C	.	.	PASS	END=161047518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	161047519	.	A	.	.	PASS	END=161047529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	161047530	.	G	.	.	PASS	END=161047531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	161047532	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:18:60
chr1	161047533	.	A	.	.	PASS	END=161047536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:57:60
chr1	161047537	.	C	.	.	PASS	END=161047556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	161047557	.	T	.	.	PASS	END=161047570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	161047571	.	A	.	.	PASS	END=161047574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	161047575	.	C	.	.	LowGQX	END=161047578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	161047579	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	161047580	.	C	.	.	LowGQX	END=161047584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	161049329	.	T	.	.	PASS	END=161049332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	161049333	.	C	.	.	PASS	END=161049334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	161049335	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:48:60
chr1	161049336	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:9:60
chr1	161049337	.	G	.	.	PASS	END=161049341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	161049342	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:60:60
chr1	161049343	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:42:60
chr1	161049344	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:60:60
chr1	161049345	.	A	.	.	PASS	END=161049348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	161049349	.	G	.	.	PASS	END=161049354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	161049355	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr1	161049356	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:66:60
chr1	161049357	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:24:60
chr1	161049358	.	G	A	646.39	SB	DP=24;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=6.6812;MQ=60;MQ0=0;QD=26.93;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,23:24:54.17:679,54,0:60:54:1.000
chr1	161049359	.	T	.	.	PASS	END=161049362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	161049363	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:33:60
chr1	161049364	.	A	.	.	PASS	END=161049382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	161049383	.	G	.	.	PASS	END=161049390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	161049391	.	A	.	.	PASS	END=161049398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	161049399	.	C	.	.	PASS	END=161049432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	161049433	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:66:60
chr1	161049434	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:99:60
chr1	161049435	.	C	.	.	PASS	END=161049436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:51:60
chr1	161049437	.	G	.	.	PASS	END=161049458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	161049459	.	C	.	.	PASS	END=161049468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	161049469	.	G	.	.	PASS	END=161049491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	161049492	.	G	.	.	PASS	END=161049525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	161049526	.	A	.	.	PASS	END=161049567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	161049568	.	G	.	.	PASS	END=161049641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	161049642	.	G	.	.	PASS	END=161049671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	161049672	.	T	.	.	PASS	END=161049699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	161049700	.	A	.	.	PASS	END=161049712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	161049713	.	T	.	.	PASS	END=161049744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	161049745	.	G	.	.	PASS	END=161049760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	161049761	.	A	.	.	PASS	END=161049775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr1	161049776	.	T	.	.	PASS	END=161049779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	161049780	.	G	.	.	PASS	END=161049790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	161058957	.	T	.	.	PASS	END=161059062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	161059063	.	C	.	.	PASS	END=161059089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	161059090	.	T	.	.	PASS	END=161059103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	161059104	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:67:60
chr1	161059105	.	C	.	.	PASS	END=161059119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr1	161059120	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:75:60
chr1	161059121	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:99:60
chr1	161059122	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr1	161059123	.	C	.	.	PASS	END=161059137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:92:60
chr1	161068324	.	C	.	.	LowGQX	END=161068590	GT	./.
chr1	161068591	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068592	.	G	.	.	LowGQX	.	GT	./.
chr1	161068593	.	C	.	.	LowGQX	END=161068618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068619	.	G	.	.	LowGQX	.	GT	./.
chr1	161068620	.	G	.	.	LowGQX	END=161068640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068641	.	A	.	.	LowGQX	.	GT	./.
chr1	161068642	.	C	.	.	LowGQX	END=161068662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068663	.	A	.	.	LowGQX	.	GT	./.
chr1	161068664	.	G	.	.	LowGQX	END=161068669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068670	.	T	.	.	LowGQX	.	GT	./.
chr1	161068671	.	G	.	.	LowGQX	END=161068701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068702	.	A	.	.	LowGQX	.	GT	./.
chr1	161068703	.	C	.	.	LowGQX	END=161068704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068705	.	G	.	.	LowGQX	.	GT	./.
chr1	161068706	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068707	.	C	.	.	LowGQX	.	GT	./.
chr1	161068708	.	C	.	.	LowGQX	END=161068720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068721	.	C	.	.	LowGQX	.	GT	./.
chr1	161068722	.	A	.	.	LowGQX	END=161068723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068724	.	T	.	.	LowGQX	.	GT	./.
chr1	161068725	.	A	.	.	LowGQX	END=161068729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068730	.	C	.	.	LowGQX	.	GT	./.
chr1	161068731	.	A	.	.	LowGQX	END=161068732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068733	.	C	.	.	LowGQX	.	GT	./.
chr1	161068734	.	T	.	.	LowGQX	END=161068738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068739	.	C	.	.	LowGQX	.	GT	./.
chr1	161068740	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068741	.	G	.	.	LowGQX	END=161068821	GT	./.
chr1	161068822	.	T	.	.	LowGQX	END=161068845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068846	.	C	.	.	LowGQX	.	GT	./.
chr1	161068847	.	C	.	.	LowGQX	END=161068851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068852	.	G	.	.	LowGQX	.	GT	./.
chr1	161068853	.	G	.	.	LowGQX	END=161068855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068856	.	T	.	.	LowGQX	.	GT	./.
chr1	161068857	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068858	.	G	.	.	LowGQX	.	GT	./.
chr1	161068859	.	C	.	.	LowGQX	END=161068867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068868	.	C	.	.	LowGQX	.	GT	./.
chr1	161068869	.	C	.	.	LowGQX	END=161068877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068878	.	T	.	.	LowGQX	.	GT	./.
chr1	161068879	.	T	.	.	LowGQX	END=161068918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068919	.	G	.	.	LowGQX	.	GT	./.
chr1	161068920	.	A	.	.	LowGQX	END=161068922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068923	.	T	.	.	LowGQX	.	GT	./.
chr1	161068924	.	C	.	.	LowGQX	END=161068995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161068996	.	A	.	.	LowGQX	.	GT	./.
chr1	161068997	.	G	.	.	LowGQX	END=161069006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161069007	.	G	.	.	LowGQX	.	GT	./.
chr1	161069008	.	T	.	.	LowGQX	END=161069101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161069102	.	A	.	.	LowGQX	END=161069103	GT	./.
chr1	161069104	.	C	.	.	LowGQX	END=161069106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161069107	.	C	.	.	LowGQX	.	GT	./.
chr1	161069108	.	T	.	.	LowGQX	END=161069117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161069134	.	A	.	.	LowGQX	END=161069148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161069149	.	G	.	.	LowGQX	.	GT	./.
chr1	161069150	.	G	.	.	LowGQX	END=161069162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161069163	.	C	.	.	LowGQX	.	GT	./.
chr1	161069164	.	T	.	.	LowGQX	END=161069180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161069181	.	T	.	.	LowGQX	.	GT	./.
chr1	161069182	.	G	.	.	LowGQX	END=161069187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161069188	.	C	.	.	LowGQX	END=161069297	GT	./.
chr1	161069367	.	A	.	.	LowGQX	END=161069588	GT	./.
chr1	161069849	.	A	.	.	LowGQX	END=161069923	GT	./.
chr1	161069924	.	C	.	.	LowGQX	END=161070016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161070471	.	C	.	.	LowGQX	END=161070651	GT	./.
chr1	161071836	.	A	.	.	LowGQX	END=161071963	GT	./.
chr1	161072072	.	C	.	.	LowGQX	END=161072171	GT	./.
chr1	161087730	.	G	.	.	LowGQX	END=161087829	GT	./.
chr1	161087918	.	C	.	.	LowGQX	END=161088017	GT	./.
chr1	161088265	.	G	.	.	LowGQX	END=161088273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161088274	.	G	.	.	LowGQX	END=161088275	GT	./.
chr1	161088276	.	A	.	.	LowGQX	END=161088281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161088282	.	C	.	.	LowGQX	.	GT	./.
chr1	161088283	.	C	.	.	LowGQX	END=161088300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161088301	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	161088302	.	T	.	.	LowGQX	END=161088303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161088304	.	C	.	.	LowGQX	.	GT	./.
chr1	161088305	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161088306	.	G	.	.	LowGQX	.	GT	./.
chr1	161088307	.	A	.	.	LowGQX	END=161088310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161088311	.	G	.	.	LowGQX	.	GT	./.
chr1	161088312	.	T	.	.	LowGQX	END=161088334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161088335	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	161088336	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	161088337	.	T	.	.	LowGQX	END=161088341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088342	.	G	.	.	LowGQX	.	GT	./.
chr1	161088343	.	T	.	.	LowGQX	END=161088344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088345	.	A	.	.	LowGQX	END=161088346	GT	./.
chr1	161088347	.	A	.	.	LowGQX	END=161088348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088349	.	C	.	.	LowGQX	.	GT	./.
chr1	161088350	.	A	.	.	LowGQX	END=161088359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088360	.	G	.	.	LowGQX	.	GT	./.
chr1	161088361	.	A	.	.	LowGQX	END=161088362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088363	.	C	.	.	LowGQX	.	GT	./.
chr1	161088364	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088574	.	A	.	.	LowGQX	END=161088576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088577	.	C	.	.	LowGQX	.	GT	./.
chr1	161088578	.	T	.	.	LowGQX	END=161088582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088583	.	T	.	.	LowGQX	.	GT	./.
chr1	161088584	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088585	.	C	.	.	LowGQX	.	GT	./.
chr1	161088586	.	A	.	.	LowGQX	END=161088590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088591	.	C	.	.	LowGQX	.	GT	./.
chr1	161088592	.	A	.	.	LowGQX	END=161088595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088596	.	C	.	.	LowGQX	.	GT	./.
chr1	161088597	.	T	.	.	LowGQX	END=161088598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088599	.	C	.	.	LowGQX	.	GT	./.
chr1	161088600	.	T	.	.	LowGQX	END=161088603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088604	.	A	.	.	LowGQX	.	GT	./.
chr1	161088605	.	G	.	.	LowGQX	END=161088614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088615	.	C	.	.	LowGQX	.	GT	./.
chr1	161088616	.	C	.	.	LowGQX	END=161088627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088628	.	G	.	.	LowGQX	.	GT	./.
chr1	161088629	.	G	.	.	LowGQX	END=161088633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088634	.	C	.	.	LowGQX	END=161088635	GT	./.
chr1	161088636	.	G	.	.	LowGQX	END=161088637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088638	.	T	.	.	LowGQX	.	GT	./.
chr1	161088639	.	A	.	.	LowGQX	END=161088642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088643	.	C	.	32.37	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:2.68:60:3
chr1	161088644	.	A	.	.	LowGQX	END=161088647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088648	.	C	.	.	LowGQX	.	GT	./.
chr1	161088649	.	T	.	.	LowGQX	END=161088667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088668	.	C	.	.	LowGQX	END=161088669	GT	./.
chr1	161088670	.	A	.	.	LowGQX	END=161088673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161088922	.	A	.	.	LowGQX	END=161089180	GT	./.
chr1	161089297	.	A	.	.	LowGQX	END=161089404	GT	./.
chr1	161089607	.	A	.	.	LowGQX	END=161089615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161089616	.	A	.	.	LowGQX	END=161089744	GT	./.
chr1	161089895	.	A	.	.	LowGQX	END=161090024	GT	./.
chr1	161090287	.	A	.	.	LowGQX	END=161090557	GT	./.
chr1	161091935	.	G	.	.	LowGQX	END=161092315	GT	./.
chr1	161092774	.	C	.	.	LowGQX	END=161093013	GT	./.
chr1	161093627	.	A	.	.	LowGQX	END=161093655	GT	./.
chr1	161093656	.	G	.	.	LowGQX	END=161093738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161093926	.	A	.	.	LowGQX	END=161094254	GT	./.
chr1	161123786	.	A	.	.	LowGQX	END=161123846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161123847	.	C	.	.	LowGQX	END=161123912	GT	./.
chr1	161126724	.	C	.	.	LowGQX	END=161126751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161126752	.	A	.	.	LowGQX	END=161126792	GT	./.
chr1	161126793	.	C	.	.	LowGQX	END=161126823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161127026	.	G	.	.	LowGQX	END=161127125	GT	./.
chr1	161127396	.	A	.	.	LowGQX	END=161127412	GT	./.
chr1	161127413	.	A	.	.	LowGQX	END=161127438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161127439	.	A	.	.	LowGQX	.	GT	./.
chr1	161127440	.	A	.	.	LowGQX	END=161127495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161127907	.	A	.	.	LowGQX	END=161128006	GT	./.
chr1	161128193	.	G	.	.	LowGQX	END=161128292	GT	./.
chr1	161130429	.	C	.	.	LowGQX	END=161130520	GT	./.
chr1	161130521	.	C	.	.	LowGQX	END=161130525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130526	.	G	.	.	LowGQX	.	GT	./.
chr1	161130527	.	G	.	.	LowGQX	END=161130534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130535	.	C	.	.	LowGQX	.	GT	./.
chr1	161130536	.	A	.	.	LowGQX	END=161130544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130545	.	A	.	.	LowGQX	.	GT	./.
chr1	161130546	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130547	.	A	.	.	LowGQX	.	GT	./.
chr1	161130548	.	A	.	.	LowGQX	END=161130550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130551	.	C	.	.	LowGQX	.	GT	./.
chr1	161130552	.	C	.	.	LowGQX	END=161130558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130559	.	T	.	.	LowGQX	.	GT	./.
chr1	161130560	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130561	.	G	.	.	LowGQX	.	GT	./.
chr1	161130562	.	G	.	.	LowGQX	END=161130565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130566	.	A	.	.	LowGQX	.	GT	./.
chr1	161130567	.	A	.	.	LowGQX	END=161130586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130587	.	C	.	.	LowGQX	.	GT	./.
chr1	161130588	.	C	.	.	LowGQX	END=161130591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130592	.	C	.	.	LowGQX	.	GT	./.
chr1	161130593	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130594	.	G	.	.	LowGQX	.	GT	./.
chr1	161130595	.	G	.	.	LowGQX	END=161130600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130601	.	T	.	.	LowGQX	.	GT	./.
chr1	161130602	.	C	.	.	LowGQX	END=161130604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130605	.	C	.	.	LowGQX	.	GT	./.
chr1	161130606	.	C	.	.	LowGQX	END=161130609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130610	.	T	.	.	LowGQX	END=161130611	GT	./.
chr1	161130612	.	A	.	.	LowGQX	END=161130615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130616	.	G	.	.	LowGQX	.	GT	./.
chr1	161130617	.	C	.	.	LowGQX	END=161130621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130622	.	G	.	.	LowGQX	.	GT	./.
chr1	161130623	.	A	.	.	LowGQX	END=161130639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130640	.	G	.	.	LowGQX	END=161130641	GT	./.
chr1	161130642	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130643	.	A	.	.	LowGQX	END=161130644	GT	./.
chr1	161130645	.	G	.	.	LowGQX	END=161130646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130647	.	A	.	.	LowGQX	.	GT	./.
chr1	161130648	.	C	.	.	LowGQX	END=161130651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130652	.	A	.	.	LowGQX	END=161130653	GT	./.
chr1	161130654	.	G	.	.	LowGQX	END=161130658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130659	.	C	.	.	LowGQX	.	GT	./.
chr1	161130660	.	G	.	.	LowGQX	END=161130661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130662	.	C	.	.	LowGQX	.	GT	./.
chr1	161130663	.	C	.	.	LowGQX	END=161130666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130667	.	A	.	.	LowGQX	.	GT	./.
chr1	161130668	.	G	.	.	LowGQX	END=161130670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130671	.	C	.	.	LowGQX	END=161130690	GT	./.
chr1	161130691	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130692	.	G	.	.	LowGQX	END=161130693	GT	./.
chr1	161130694	.	T	.	.	LowGQX	END=161130703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130704	.	G	.	.	LowGQX	.	GT	./.
chr1	161130705	.	G	.	.	LowGQX	END=161130721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130722	.	G	.	.	LowGQX	.	GT	./.
chr1	161130723	.	T	.	.	LowGQX	END=161130729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130730	.	G	.	.	LowGQX	END=161130731	GT	./.
chr1	161130732	.	C	.	.	LowGQX	END=161130741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130742	.	T	.	.	LowGQX	.	GT	./.
chr1	161130743	.	C	.	.	LowGQX	END=161130746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130747	.	C	.	.	LowGQX	.	GT	./.
chr1	161130748	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130749	.	A	.	.	LowGQX	.	GT	./.
chr1	161130750	.	A	.	.	LowGQX	END=161130754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130755	.	G	.	.	LowGQX	.	GT	./.
chr1	161130756	.	C	.	.	LowGQX	END=161130792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130793	.	A	.	.	LowGQX	.	GT	./.
chr1	161130794	.	A	.	.	LowGQX	END=161130804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130805	.	C	.	.	LowGQX	.	GT	./.
chr1	161130806	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130807	.	T	.	.	LowGQX	.	GT	./.
chr1	161130808	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130809	.	G	.	.	LowGQX	.	GT	./.
chr1	161130810	.	G	.	.	LowGQX	END=161130840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161130841	.	T	.	.	LowGQX	END=161131032	GT	./.
chr1	161131808	.	A	.	.	LowGQX	END=161131826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	161131827	.	G	T	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	161131828	.	G	.	.	LowGQX	END=161131907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161132058	.	A	.	.	LowGQX	END=161132144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161132145	.	T	.	.	LowGQX	END=161132182	GT	./.
chr1	161132403	.	A	.	.	LowGQX	END=161132436	GT	./.
chr1	161132437	.	C	.	.	LowGQX	END=161132481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161132482	.	T	.	.	LowGQX	.	GT	./.
chr1	161132483	.	T	.	.	LowGQX	END=161132517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161132518	.	T	.	.	LowGQX	.	GT	./.
chr1	161132677	.	G	.	.	LowGQX	END=161132866	GT	./.
chr1	161133328	.	C	.	.	LowGQX	END=161133427	GT	./.
chr1	161133666	.	A	.	.	LowGQX	END=161133772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161133773	.	T	.	.	LowGQX	.	GT	./.
chr1	161133948	.	C	.	.	LowGQX	END=161134047	GT	./.
chr1	161134314	.	A	.	.	LowGQX	END=161134413	GT	./.
chr1	161134623	.	A	.	.	LowGQX	END=161134734	GT	./.
chr1	161134817	.	A	.	.	LowGQX	END=161134935	GT	./.
chr1	161135143	.	C	.	.	LowGQX	END=161135242	GT	./.
chr1	161136587	.	G	.	.	PASS	END=161136645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	161136646	.	G	.	.	PASS	END=161136735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	161136736	.	A	.	.	PASS	END=161136775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	161136839	.	C	.	.	PASS	END=161136876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	161136877	.	C	.	.	PASS	END=161136937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	161136938	.	G	.	.	PASS	END=161137014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	161137015	.	C	.	.	PASS	END=161137075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	161137103	.	G	.	.	PASS	END=161137138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	161137139	.	T	.	.	PASS	END=161137219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	161137220	.	C	.	.	PASS	END=161137240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	161137241	.	G	.	.	PASS	END=161137265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:78:60
chr1	161137266	.	A	.	.	PASS	END=161137284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	161137285	.	A	.	.	PASS	END=161137294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	161137295	.	C	.	.	PASS	END=161137298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	161137299	.	T	.	.	PASS	END=161137304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	161137305	.	T	.	.	PASS	END=161137306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	161137307	.	T	.	.	PASS	END=161137308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	161137309	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	161137310	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	161137311	.	C	.	.	LowGQX	END=161137312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	161137313	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	161137314	.	A	.	.	LowGQX	END=161137315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	161137316	.	C	.	.	PASS	END=161137317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	161137318	.	T	.	.	LowGQX	END=161137325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:58
chr1	161137326	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:58
chr1	161137327	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:58
chr1	161137734	.	C	.	.	PASS	END=161137756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	161137757	.	C	.	.	PASS	END=161137780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	161137781	.	G	.	.	PASS	END=161137827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	161137828	.	T	.	.	PASS	END=161137928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr1	161137929	.	C	.	.	PASS	END=161137959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	161137960	.	C	.	.	PASS	END=161137968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	161138162	.	T	.	.	PASS	END=161138176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	161138177	.	G	.	.	PASS	END=161138192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	161138193	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:36:60
chr1	161138194	.	G	.	.	PASS	END=161138213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:83:60
chr1	161138214	.	C	.	.	PASS	END=161138243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	161138244	.	G	.	.	PASS	END=161138345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	161138346	.	T	.	.	PASS	END=161138417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	161138732	.	G	.	.	PASS	END=161138741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr1	161138742	.	C	.	.	PASS	END=161138760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	161138761	.	T	.	.	PASS	END=161138785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	161138786	.	G	.	.	PASS	END=161138819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	161138820	.	G	.	.	PASS	END=161138839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	161138840	.	G	.	.	PASS	END=161138908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	161138909	.	G	.	.	PASS	END=161138944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	161138945	.	T	.	.	PASS	END=161138975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	161138976	.	A	.	.	PASS	END=161138983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	161138984	.	C	.	.	PASS	END=161139000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	161139001	.	C	.	.	PASS	END=161139016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	161139017	.	T	.	.	PASS	END=161139024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	161139390	.	T	.	.	PASS	END=161139477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	161139478	.	C	.	.	PASS	END=161139493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	161139494	.	T	.	.	PASS	END=161139544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	161139545	.	C	.	.	PASS	END=161139561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	161139645	.	G	.	.	PASS	END=161139683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	161139684	.	C	.	.	PASS	END=161139727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	161139728	.	C	.	.	PASS	END=161139771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	161139772	.	T	.	.	PASS	END=161139807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	161139808	.	T	.	.	PASS	END=161139843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:84:60
chr1	161139844	.	T	.	.	PASS	END=161139864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	161139865	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:69:60
chr1	161140148	.	A	.	.	PASS	END=161140152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	161140153	.	C	.	.	PASS	END=161140167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	161140168	.	C	.	.	PASS	END=161140207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	161140208	.	C	.	.	PASS	END=161140235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	161140236	.	G	.	.	PASS	END=161140305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	161140306	.	G	.	.	PASS	END=161140389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	161140390	.	G	.	.	PASS	END=161140437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	161140438	.	C	.	.	PASS	END=161140538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	161140539	.	T	.	.	PASS	END=161140569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	161140570	.	A	.	.	PASS	END=161140610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	161140646	.	C	.	.	PASS	END=161140766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	161140767	.	G	.	.	PASS	END=161140860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	161140861	.	C	.	.	PASS	END=161140913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	161140914	.	A	.	.	PASS	END=161140920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	161140921	.	G	.	.	PASS	END=161140941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	161140942	.	C	.	.	PASS	END=161140957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	161140958	.	A	.	.	PASS	END=161140969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	161140970	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:66:60
chr1	161140971	.	C	.	.	PASS	END=161141011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	161141012	.	T	.	.	PASS	END=161141017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	161141604	.	A	.	.	LowGQX	END=161141714	GT	./.
chr1	161141715	.	G	.	.	LowGQX	END=161141721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141722	.	G	.	.	LowGQX	.	GT	./.
chr1	161141723	.	T	.	.	LowGQX	END=161141725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141726	.	C	.	.	LowGQX	.	GT	./.
chr1	161141727	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141728	.	C	.	.	LowGQX	.	GT	./.
chr1	161141729	.	A	.	.	LowGQX	END=161141742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141743	.	G	.	.	LowGQX	END=161141744	GT	./.
chr1	161141745	.	C	.	.	LowGQX	END=161141747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141748	.	C	.	.	LowGQX	.	GT	./.
chr1	161141749	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141750	.	A	.	.	LowGQX	.	GT	./.
chr1	161141751	.	G	.	.	LowGQX	END=161141752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141753	.	G	.	.	LowGQX	END=161141756	GT	./.
chr1	161141757	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141758	.	T	.	.	LowGQX	END=161141759	GT	./.
chr1	161141760	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141761	.	C	.	.	LowGQX	END=161141765	GT	./.
chr1	161141766	.	T	.	.	LowGQX	END=161141767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141768	.	T	.	.	LowGQX	END=161141769	GT	./.
chr1	161141770	.	C	.	.	LowGQX	END=161141772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141773	.	T	.	.	LowGQX	END=161141779	GT	./.
chr1	161141780	.	G	.	.	LowGQX	END=161141781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141782	.	T	.	.	LowGQX	.	GT	./.
chr1	161141783	.	A	.	.	LowGQX	END=161141785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141786	.	A	.	.	LowGQX	.	GT	./.
chr1	161141787	.	A	.	.	LowGQX	END=161141788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141789	.	A	.	.	LowGQX	.	GT	./.
chr1	161141790	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141791	.	G	.	.	LowGQX	.	GT	./.
chr1	161141792	.	C	.	.	LowGQX	END=161141793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141794	.	C	.	.	LowGQX	.	GT	./.
chr1	161141795	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141796	.	A	.	.	LowGQX	.	GT	./.
chr1	161141797	.	G	.	.	LowGQX	END=161141798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141799	.	T	.	.	LowGQX	.	GT	./.
chr1	161141800	.	C	.	.	LowGQX	END=161141801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141802	.	C	.	.	LowGQX	END=161141803	GT	./.
chr1	161141804	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141805	.	G	.	.	LowGQX	END=161141806	GT	./.
chr1	161141807	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141808	.	A	.	.	LowGQX	END=161141809	GT	./.
chr1	161141810	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141811	.	A	.	.	LowGQX	END=161141812	GT	./.
chr1	161141813	.	C	.	.	LowGQX	END=161141818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141819	.	T	.	.	LowGQX	END=161141823	GT	./.
chr1	161141824	.	G	.	.	LowGQX	END=161141826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141827	.	A	.	.	LowGQX	.	GT	./.
chr1	161141828	.	G	.	.	LowGQX	END=161141830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141831	.	C	.	.	LowGQX	END=161141833	GT	./.
chr1	161141834	.	C	.	.	LowGQX	END=161141835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141836	.	C	.	.	LowGQX	END=161141837	GT	./.
chr1	161141838	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141839	.	C	.	.	LowGQX	END=161141840	GT	./.
chr1	161141841	.	T	.	.	LowGQX	END=161141842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141843	.	C	.	.	LowGQX	END=161141845	GT	./.
chr1	161141846	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	161141847	.	C	.	.	LowGQX	END=161141850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141851	.	A	.	.	LowGQX	END=161141853	GT	./.
chr1	161141854	.	T	.	.	LowGQX	END=161141856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141857	.	G	.	.	LowGQX	END=161141859	GT	./.
chr1	161141860	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161141861	.	A	.	.	LowGQX	END=161141881	GT	./.
chr1	161142015	.	A	.	.	LowGQX	END=161142017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161142018	.	T	.	.	LowGQX	.	GT	./.
chr1	161142019	.	G	.	.	LowGQX	END=161142020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161142021	.	G	.	.	LowGQX	.	GT	./.
chr1	161142022	.	G	.	.	LowGQX	END=161142031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161142032	.	T	.	.	LowGQX	.	GT	./.
chr1	161142033	.	C	.	.	LowGQX	END=161142044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161142045	.	C	.	.	LowGQX	END=161142046	GT	./.
chr1	161142047	.	C	.	.	LowGQX	END=161142050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161142051	.	G	.	.	LowGQX	.	GT	./.
chr1	161142052	.	G	.	.	LowGQX	END=161142056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161142057	.	T	.	.	LowGQX	.	GT	./.
chr1	161142058	.	C	.	.	LowGQX	END=161142070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161142071	.	T	.	.	LowGQX	END=161142123	GT	./.
chr1	161143393	.	A	.	.	LowGQX	END=161143519	GT	./.
chr1	161143644	.	T	.	.	LowGQX	END=161143841	GT	./.
chr1	161144711	.	A	.	.	LowGQX	END=161145080	GT	./.
chr1	161145596	.	A	.	.	LowGQX	END=161145852	GT	./.
chr1	161146638	.	G	.	.	LowGQX	END=161146679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161146680	.	C	.	.	LowGQX	END=161146750	GT	./.
chr1	161146751	.	G	.	.	LowGQX	END=161146753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161146754	.	A	.	.	LowGQX	.	GT	./.
chr1	161146755	.	A	.	.	LowGQX	END=161146777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161146778	.	A	.	.	LowGQX	.	GT	./.
chr1	161146779	.	C	.	.	LowGQX	END=161146780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161146781	.	A	.	.	LowGQX	.	GT	./.
chr1	161146782	.	C	.	.	LowGQX	END=161146792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161146793	.	T	.	.	LowGQX	.	GT	./.
chr1	161146794	.	A	.	.	LowGQX	END=161146798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161146799	.	A	.	.	LowGQX	END=161146800	GT	./.
chr1	161146801	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161146802	.	A	.	.	LowGQX	.	GT	./.
chr1	161146803	.	G	.	.	LowGQX	END=161146808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161146809	.	G	.	.	LowGQX	END=161146810	GT	./.
chr1	161146811	.	G	.	.	LowGQX	END=161146812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161146813	.	T	.	.	LowGQX	.	GT	./.
chr1	161146814	.	C	.	.	LowGQX	END=161146828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161146829	.	T	.	.	LowGQX	.	GT	./.
chr1	161146830	.	G	.	.	LowGQX	END=161146838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161146839	.	G	.	.	LowGQX	.	GT	./.
chr1	161146840	.	T	.	.	LowGQX	END=161146844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161146845	.	T	.	.	LowGQX	END=161146846	GT	./.
chr1	161146847	.	C	.	.	LowGQX	END=161146848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161146849	.	T	.	.	LowGQX	.	GT	./.
chr1	161146850	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161146851	.	T	.	.	LowGQX	.	GT	./.
chr1	161146852	.	T	.	.	LowGQX	END=161146854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161146855	.	A	.	.	LowGQX	.	GT	./.
chr1	161146856	.	C	.	.	LowGQX	END=161146857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161146858	.	T	.	.	LowGQX	.	GT	./.
chr1	161146859	.	T	.	.	LowGQX	END=161146872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161160926	.	G	.	.	LowGQX	END=161161155	GT	./.
chr1	161161156	.	G	.	.	LowGQX	END=161161228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161161229	.	A	.	.	LowGQX	END=161161356	GT	./.
chr1	161161853	.	A	.	.	LowGQX	END=161162032	GT	./.
chr1	161163001	.	A	.	.	LowGQX	END=161163134	GT	./.
chr1	161163135	.	G	.	.	LowGQX	END=161163141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163142	.	T	.	.	LowGQX	.	GT	./.
chr1	161163143	.	T	.	.	LowGQX	END=161163150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163151	.	G	.	.	LowGQX	.	GT	./.
chr1	161163152	.	C	.	.	LowGQX	END=161163163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163164	.	C	.	.	LowGQX	.	GT	./.
chr1	161163165	.	G	.	.	LowGQX	END=161163166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163167	.	G	.	.	LowGQX	.	GT	./.
chr1	161163168	.	G	.	.	LowGQX	END=161163180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163428	.	A	.	.	LowGQX	END=161163618	GT	./.
chr1	161163723	.	A	.	.	LowGQX	END=161163802	GT	./.
chr1	161163803	.	G	.	.	LowGQX	END=161163805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163806	.	C	.	.	LowGQX	.	GT	./.
chr1	161163807	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163808	.	A	.	.	LowGQX	END=161163809	GT	./.
chr1	161163810	.	G	.	.	LowGQX	END=161163811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163812	.	C	.	.	LowGQX	END=161163813	GT	./.
chr1	161163814	.	A	.	.	LowGQX	END=161163821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163822	.	G	.	.	LowGQX	.	GT	./.
chr1	161163823	.	T	.	.	LowGQX	END=161163833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163834	.	G	.	.	LowGQX	.	GT	./.
chr1	161163835	.	C	.	.	LowGQX	END=161163840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163841	.	C	.	.	LowGQX	END=161163842	GT	./.
chr1	161163843	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163844	.	T	.	.	LowGQX	END=161163845	GT	./.
chr1	161163846	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163847	.	G	.	.	LowGQX	END=161163848	GT	./.
chr1	161163849	.	T	.	.	LowGQX	END=161163853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163854	.	A	.	.	LowGQX	END=161163856	GT	./.
chr1	161163857	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163858	.	C	.	.	LowGQX	.	GT	./.
chr1	161163859	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163860	.	C	.	.	LowGQX	END=161163861	GT	./.
chr1	161163862	.	A	.	.	LowGQX	END=161163864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163865	.	G	.	.	LowGQX	.	GT	./.
chr1	161163866	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163867	.	G	.	.	LowGQX	.	GT	./.
chr1	161163868	.	C	.	.	LowGQX	END=161163870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163871	.	C	.	.	LowGQX	.	GT	./.
chr1	161163872	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163873	.	C	.	.	LowGQX	.	GT	./.
chr1	161163874	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163875	.	G	.	.	LowGQX	.	GT	./.
chr1	161163876	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163877	.	G	.	.	LowGQX	.	GT	./.
chr1	161163878	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163879	.	G	.	.	LowGQX	.	GT	./.
chr1	161163880	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163881	.	C	.	.	LowGQX	.	GT	./.
chr1	161163882	.	G	.	.	LowGQX	END=161163885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163886	.	G	.	.	LowGQX	END=161163887	GT	./.
chr1	161163888	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163889	.	G	.	.	LowGQX	.	GT	./.
chr1	161163890	.	T	.	.	LowGQX	END=161163891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163892	.	G	.	.	LowGQX	.	GT	./.
chr1	161163893	.	A	.	.	LowGQX	END=161163896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163897	.	T	.	.	LowGQX	END=161163898	GT	./.
chr1	161163899	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163900	.	C	.	.	LowGQX	.	GT	./.
chr1	161163901	.	G	.	.	LowGQX	END=161163904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163905	.	G	.	.	LowGQX	.	GT	./.
chr1	161163906	.	T	.	.	LowGQX	END=161163910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163911	.	C	.	.	LowGQX	END=161163912	GT	./.
chr1	161163913	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163914	.	G	.	.	LowGQX	END=161163915	GT	./.
chr1	161163916	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163917	.	G	.	.	LowGQX	.	GT	./.
chr1	161163918	.	G	.	.	LowGQX	END=161163919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163920	.	C	.	.	LowGQX	.	GT	./.
chr1	161163921	.	A	.	.	LowGQX	END=161163923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163924	.	T	.	.	LowGQX	END=161163926	GT	./.
chr1	161163927	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163928	.	A	.	.	LowGQX	.	GT	./.
chr1	161163929	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163930	.	T	.	.	LowGQX	.	GT	./.
chr1	161163931	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163932	.	G	.	.	LowGQX	.	GT	./.
chr1	161163933	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163934	.	G	.	.	LowGQX	.	GT	./.
chr1	161163935	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163936	.	T	.	.	LowGQX	.	GT	./.
chr1	161163937	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163938	.	A	.	.	LowGQX	.	GT	./.
chr1	161163939	.	G	.	.	LowGQX	END=161163940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163941	.	A	.	.	LowGQX	END=161163943	GT	./.
chr1	161163944	.	A	.	.	LowGQX	END=161163945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163946	.	A	.	.	LowGQX	END=161163947	GT	./.
chr1	161163948	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163949	.	C	.	.	LowGQX	.	GT	./.
chr1	161163950	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163951	.	T	.	.	LowGQX	.	GT	./.
chr1	161163952	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163953	.	G	.	.	LowGQX	END=161163978	GT	./.
chr1	161163979	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163980	.	T	.	.	LowGQX	.	GT	./.
chr1	161163981	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163982	.	G	.	.	LowGQX	END=161163984	GT	./.
chr1	161163985	.	C	.	.	LowGQX	END=161163986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163987	.	T	.	.	LowGQX	END=161163988	GT	./.
chr1	161163989	.	T	.	.	LowGQX	END=161163990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163991	.	G	.	.	LowGQX	END=161163992	GT	./.
chr1	161163993	.	T	.	.	LowGQX	END=161163994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161163995	.	G	.	.	LowGQX	END=161163998	GT	./.
chr1	161163999	.	A	.	.	LowGQX	END=161164000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161164001	.	G	.	.	LowGQX	.	GT	./.
chr1	161164002	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161164003	.	G	.	.	LowGQX	.	GT	./.
chr1	161164004	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161164005	.	C	.	.	LowGQX	.	GT	./.
chr1	161164006	.	A	.	.	LowGQX	END=161164008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161164009	.	G	.	.	LowGQX	END=161164011	GT	./.
chr1	161164012	.	C	.	.	LowGQX	END=161164013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161165253	.	A	.	.	LowGQX	END=161165427	GT	./.
chr1	161165959	.	A	.	.	LowGQX	END=161166095	GT	./.
chr1	161166283	.	T	.	.	LowGQX	END=161166672	GT	./.
chr1	161167783	.	A	.	.	LowGQX	END=161167798	GT	./.
chr1	161167799	.	G	.	.	LowGQX	END=161167976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161167977	.	T	.	.	LowGQX	END=161168419	GT	./.
chr1	161172125	.	T	.	.	PASS	END=161172151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	161172152	.	C	.	.	PASS	END=161172183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	161172184	.	G	.	.	PASS	END=161172316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	161172317	.	T	.	.	PASS	END=161172321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	161173176	.	A	.	.	PASS	END=161173182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	161173183	.	C	.	.	PASS	END=161173186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	161173187	.	G	.	.	PASS	END=161173194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	161173195	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:39:60
chr1	161173196	.	C	.	.	PASS	END=161173210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	161173211	.	G	.	.	PASS	END=161173228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	161173229	.	G	.	.	PASS	END=161173269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	161173270	.	T	.	.	PASS	END=161173369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	161173370	.	T	.	.	PASS	END=161173384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	161176146	.	G	.	.	PASS	END=161176156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	161176157	.	G	.	.	PASS	END=161176180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	161176181	.	A	.	.	PASS	END=161176222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	161176223	.	G	.	.	PASS	END=161176277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	161176278	.	T	.	.	PASS	END=161176302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	161176303	.	G	.	.	PASS	END=161176318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	161176319	.	T	.	.	PASS	END=161176345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	161176346	.	C	.	.	PASS	END=161176361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	161176362	.	T	.	.	PASS	END=161176377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	161176378	.	C	.	.	PASS	END=161176384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	161176385	.	C	.	.	PASS	END=161176388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	161176389	.	T	.	.	PASS	END=161176397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	161176398	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	161176399	.	G	.	.	PASS	END=161176400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	161176401	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	161176402	.	C	.	.	PASS	END=161176404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	161176405	.	G	.	.	LowGQX	END=161176410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	161176411	.	T	.	.	PASS	END=161176412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	161176413	.	T	.	.	LowGQX	END=161176420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	161176421	.	T	.	.	LowGQX	END=161176422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	161176423	.	T	.	.	LowGQX	END=161176427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	161176428	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	161176429	.	T	.	.	LowGQX	END=161176431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	161176432	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr1	161176433	.	T	.	.	LowGQX	END=161176434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	161176435	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	161176436	.	G	.	.	LowGQX	END=161176438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	161178932	.	T	.	.	PASS	END=161178949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	161178950	.	T	.	.	PASS	END=161178976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	161178977	.	T	.	.	PASS	END=161179003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	161179004	.	C	.	.	PASS	END=161179141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	161179142	.	A	.	.	PASS	END=161179154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	161179222	.	G	.	.	PASS	END=161179266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	161179267	.	T	.	.	PASS	END=161179337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	161179338	.	C	.	.	PASS	END=161179364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	161179365	.	C	.	.	PASS	END=161179392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	161179393	.	T	.	.	PASS	END=161179427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	161179428	.	G	.	.	PASS	END=161179436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	161179596	.	G	.	.	PASS	END=161179647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	161179648	.	T	.	.	PASS	END=161179700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	161179701	.	C	.	.	PASS	END=161179726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	161179727	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:76:60
chr1	161179728	.	A	.	.	PASS	END=161179740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:84:60
chr1	161179741	.	C	.	.	PASS	END=161179772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	161179850	.	T	.	.	PASS	END=161179854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	161179855	.	A	.	.	PASS	END=161179871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	161179872	.	A	.	.	PASS	END=161179900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	161179901	.	G	.	.	PASS	END=161179913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	161179914	.	G	.	.	PASS	END=161179976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	161179977	.	A	.	.	PASS	END=161180032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	161180043	.	T	.	.	PASS	END=161180149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	161180150	.	A	.	.	PASS	END=161180191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	161180192	.	C	.	.	PASS	END=161180210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	161180211	.	T	.	.	PASS	END=161180216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	161180217	.	T	.	120.26	PASS	DP=81;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:64:81:90.27:60:90
chr1	161180218	.	G	.	.	PASS	END=161180222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	161180223	.	T	G	65.14	LowQD;SB	BaseQRankSum=-2.422;DP=78;Dels=0.00;FS=11.590;HRun=5;HaplotypeScore=32.2377;MQ=60;MQ0=0;MQRankSum=-0.056;QD=0.84;ReadPosRankSum=2.749;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:57,21:78:95.13:95,0,880:60:65:0.269
chr1	161180224	.	G	.	.	PASS	END=161180230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	161180330	.	C	.	.	PASS	END=161180498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	161180499	.	A	.	.	PASS	END=161180537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:79:60
chr1	161180538	.	A	.	.	PASS	END=161180543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	161180544	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:52:60
chr1	161180545	.	C	.	.	PASS	END=161180552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	161182090	.	C	.	.	PASS	END=161182101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	161182102	.	T	.	.	PASS	END=161182121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	161182122	.	T	.	.	PASS	END=161182165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	161182166	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:48:60
chr1	161182167	.	G	.	.	PASS	END=161182193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	161182194	.	G	.	.	PASS	END=161182251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	161182252	.	T	.	.	PASS	END=161182272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	161182273	.	T	.	.	PASS	END=161182290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	161182291	.	A	.	.	PASS	END=161182293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	161182294	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:47:60
chr1	161182295	.	G	.	.	PASS	END=161182303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	161182304	.	T	.	.	PASS	END=161182314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	161182315	.	C	.	.	PASS	END=161182320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	161182321	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:42:60
chr1	161183119	.	G	.	.	PASS	END=161183172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	161183173	.	T	.	.	PASS	END=161183210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	161183211	.	T	.	.	PASS	END=161183271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	161183272	.	A	.	.	PASS	END=161183316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	161183388	.	G	.	.	PASS	END=161183427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	161183428	.	T	.	.	PASS	END=161183478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	161183479	.	G	.	.	PASS	END=161183542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	161183543	.	C	.	.	PASS	END=161183573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	161183603	.	C	.	.	PASS	END=161183686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	161183687	.	T	.	.	PASS	END=161183731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	161183895	.	C	.	.	PASS	END=161183938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	161183939	.	C	.	.	PASS	END=161183968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	161183969	.	G	.	.	PASS	END=161183995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	161183996	.	C	.	.	PASS	END=161184019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	161184020	.	C	.	.	PASS	END=161184033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	161184034	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:57:60
chr1	161185087	.	C	.	.	LowGQX	END=161185186	GT	./.
chr1	161187773	.	C	.	.	LowGQX	END=161187807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161187808	.	C	.	.	LowGQX	END=161187872	GT	./.
chr1	161187999	.	A	.	.	LowGQX	END=161188098	GT	./.
chr1	161188454	.	G	.	.	LowGQX	END=161188553	GT	./.
chr1	161188653	.	T	.	.	LowGQX	END=161188749	GT	./.
chr1	161188750	.	G	.	.	LowGQX	END=161188752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161190148	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161190149	.	A	.	.	LowGQX	END=161190320	GT	./.
chr1	161192144	.	A	.	.	PASS	END=161192153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	161192154	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:66:60
chr1	161192155	.	T	.	.	PASS	END=161192182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	161192183	.	G	.	.	PASS	END=161192208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	161192209	.	G	.	.	PASS	END=161192253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	161192254	.	C	.	.	PASS	END=161192328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	161192329	.	A	.	.	PASS	END=161192357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	161192358	.	A	.	.	PASS	END=161192363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	161192657	.	T	.	.	PASS	END=161192672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	161192673	.	T	.	.	PASS	END=161192713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	161192714	.	T	.	.	PASS	END=161192784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	161192785	.	C	.	.	PASS	END=161192812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	161192813	.	T	.	.	PASS	END=161192831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	161192832	.	C	.	.	PASS	END=161192845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:59
chr1	161192846	.	C	.	162.42	PASS	DP=68;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:54:56:99:59:99
chr1	161192847	.	A	.	.	PASS	END=161192862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:59
chr1	161192863	.	A	.	.	PASS	END=161192868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:59
chr1	161192869	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:44:59
chr1	161192870	.	C	.	.	PASS	END=161192872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:59
chr1	161192873	.	A	.	.	PASS	END=161192878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	161192879	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:45:60
chr1	161192880	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:63:60
chr1	161192881	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:42:60
chr1	161192882	.	C	.	.	PASS	END=161192891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	161193089	.	A	.	.	PASS	END=161193130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:78:60
chr1	161193131	.	C	.	.	PASS	END=161193226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:83:60
chr1	161193227	.	G	.	.	PASS	END=161193242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:96:60
chr1	161196278	.	A	.	.	LowGQX	END=161196396	GT	./.
chr1	161196662	.	C	.	.	LowGQX	END=161196756	GT	./.
chr1	161196757	.	T	.	.	LowGQX	END=161196761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161197045	.	C	.	.	LowGQX	END=161197059	GT	./.
chr1	161197060	.	A	.	.	LowGQX	END=161197079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161197080	.	C	.	.	LowGQX	.	GT	./.
chr1	161197081	.	T	.	.	LowGQX	END=161197144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161197424	.	A	.	.	LowGQX	END=161197529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161197672	.	A	.	.	LowGQX	END=161197781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161197974	.	A	.	.	LowGQX	END=161198100	GT	./.
chr1	161198207	.	G	.	.	LowGQX	END=161198306	GT	./.
chr1	161198503	.	A	.	.	LowGQX	END=161198609	GT	./.
chr1	161198744	.	A	.	.	LowGQX	END=161198887	GT	./.
chr1	161199467	.	G	.	.	PASS	END=161199503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	161199504	.	G	.	.	PASS	END=161199566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	161199585	.	C	.	.	PASS	END=161199672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	161199673	.	T	.	.	PASS	END=161199700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	161199701	.	C	.	.	PASS	END=161199718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	161200538	.	C	.	.	PASS	END=161200552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	161200553	.	A	.	.	PASS	END=161200564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:78:60
chr1	161200565	.	C	.	.	PASS	END=161200593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	161200594	.	C	.	.	PASS	END=161200632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	161200633	.	A	.	.	PASS	END=161200705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	161200706	.	G	.	.	PASS	END=161200725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	161200821	.	G	.	.	PASS	END=161200852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	161200853	.	G	.	.	PASS	END=161200890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	161200891	.	T	.	.	PASS	END=161200927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	161200928	.	C	.	.	PASS	END=161201037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	161201095	.	C	.	.	PASS	END=161201191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	161201192	.	A	.	.	PASS	END=161201246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	161201247	.	T	.	.	PASS	END=161201270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	161201271	.	A	.	.	PASS	END=161201324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:81:59
chr1	161202595	.	A	.	.	PASS	END=161202627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	161202628	.	T	.	.	PASS	END=161202697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	161202698	.	G	.	.	PASS	END=161202738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	161202957	.	A	.	.	PASS	END=161202975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	161202976	.	G	.	.	PASS	END=161203007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	161203008	.	G	.	.	PASS	END=161203121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr1	161203122	.	A	.	.	PASS	END=161203130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	161205594	.	A	.	.	PASS	END=161205624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:86:60
chr1	161205625	.	G	.	.	PASS	END=161205654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	161205655	.	C	.	.	PASS	END=161205673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	161205674	.	C	.	.	PASS	END=161205769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	161206247	.	A	.	.	PASS	END=161206280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	161206281	.	C	.	.	PASS	END=161206323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	161206324	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:76:63:60
chr1	161206325	.	A	.	.	PASS	END=161206349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	161206350	.	G	.	.	PASS	END=161206357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	161207791	.	T	.	.	PASS	END=161207890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	161228659	.	C	.	.	LowGQX	END=161228818	GT	./.
chr1	161253435	.	T	.	.	LowGQX	END=161253534	GT	./.
chr1	161254128	.	G	.	.	LowGQX	END=161254271	GT	./.
chr1	161275612	.	G	.	.	PASS	END=161275622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	161275623	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:59:60
chr1	161275624	.	C	.	.	PASS	END=161275627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:59
chr1	161275628	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:43:3:59
chr1	161275629	.	C	.	.	PASS	END=161275632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:59
chr1	161275633	.	T	.	63.09	PASS	DP=46;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:31:46:33.10:59:33
chr1	161275634	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:57:59
chr1	161275635	.	A	.	.	PASS	END=161275640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:59
chr1	161275641	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:51:59
chr1	161275642	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:20:59
chr1	161275643	.	T	.	.	PASS	END=161275645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:59
chr1	161275646	.	C	.	.	PASS	END=161275652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	161275653	.	G	.	.	PASS	END=161275657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	161275658	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:57:60
chr1	161275659	.	C	.	.	PASS	END=161275663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	161275664	.	C	.	.	PASS	END=161275666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	161275667	.	T	.	.	PASS	END=161275668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	161275669	.	T	.	.	PASS	END=161275670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	161275671	.	T	.	.	PASS	END=161275687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	161275688	.	T	.	.	PASS	END=161275696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	161275697	.	C	.	.	PASS	END=161275740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	161275741	.	G	.	.	PASS	END=161275785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	161275786	.	C	.	.	PASS	END=161275818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	161275847	.	G	.	.	PASS	END=161275950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	161275951	.	C	.	.	PASS	END=161276009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	161276068	.	A	.	.	PASS	END=161276227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	161276228	.	C	.	.	PASS	END=161276256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	161276257	.	A	.	.	PASS	END=161276284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	161276285	.	T	.	.	PASS	END=161276305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	161276447	.	G	.	.	PASS	END=161276472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	161276473	.	C	.	.	PASS	END=161276521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	161276522	.	C	.	.	PASS	END=161276599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	161276600	.	T	.	.	PASS	END=161276621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	161276622	.	C	.	.	PASS	END=161276644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	161276645	.	A	.	.	PASS	END=161276665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	161276666	.	T	.	.	PASS	END=161276680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	161276681	.	T	.	.	PASS	END=161276688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	161276689	.	T	.	.	PASS	END=161276698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	161276699	.	C	.	.	PASS	END=161276719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	161276720	.	A	.	.	LowGQX	END=161276722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	161276723	.	G	.	.	LowGQX	END=161276733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	161276734	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	161276735	.	G	.	.	LowGQX	END=161276736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	161276737	.	G	.	.	PASS	END=161276740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	161276741	.	G	.	.	LowGQX	END=161276743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	161276744	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	161276745	.	C	.	.	LowGQX	END=161276749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	161276750	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	161276751	.	G	.	.	LowGQX	END=161276752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	161276753	.	G	.	.	LowGQX	END=161276754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	161276755	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	161276756	.	C	.	.	LowGQX	END=161276758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	161276759	.	A	.	.	LowGQX	END=161276762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	161276997	.	T	.	.	PASS	END=161277033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	161277034	.	C	.	.	PASS	END=161277090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	161277091	.	A	.	.	PASS	END=161277185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	161277186	.	A	.	.	PASS	END=161277217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	161277218	.	C	.	.	PASS	END=161277253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	161277254	.	C	.	.	PASS	END=161277265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	161279572	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:87:60
chr1	161279573	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:46:60
chr1	161279574	.	A	.	.	PASS	END=161279591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr1	161279592	.	A	.	.	PASS	END=161279664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	161279665	.	T	.	.	PASS	END=161279681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	161279682	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:57:60
chr1	161279683	.	C	.	.	PASS	END=161279691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	161279692	.	C	.	.	PASS	END=161279704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	161279705	.	A	.	.	PASS	END=161279720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	161279721	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:51:60
chr1	161279722	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:21:60
chr1	161279723	.	C	.	.	PASS	END=161279725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	161279726	.	C	.	.	PASS	END=161279733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	161279734	.	T	.	.	LowGQX	END=161279736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	161279737	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	161279738	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	161279739	.	A	.	.	PASS	END=161279740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	161279741	.	A	.	.	LowGQX	END=161279742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	161279743	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	161279744	.	G	.	.	LowGQX	END=161279748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	161279749	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	161279750	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	161279751	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr1	161279752	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:60
chr1	161279753	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	161279754	.	G	.	.	LowGQX	END=161279756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr1	161279757	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	161279758	.	T	.	33	LowGQX	DP=7;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:7:3.01:60:3
chr1	161279759	.	G	.	.	LowGQX	.	GT	./.
chr1	161279760	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	161279761	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:3:60
chr1	161284145	.	C	.	.	PASS	END=161284163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	161284164	.	T	.	.	PASS	END=161284165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:75:60
chr1	161284166	.	G	.	.	PASS	END=161284188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	161284189	.	A	.	.	PASS	END=161284238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:96:60
chr1	161284239	.	T	.	.	PASS	END=161284266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr1	161293342	.	A	.	.	PASS	END=161293369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	161293370	.	A	.	.	PASS	END=161293493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	161293494	.	T	.	.	PASS	END=161293511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	161298135	.	T	.	.	PASS	END=161298236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	161298237	.	T	.	.	PASS	END=161298283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	161298284	.	A	.	.	PASS	END=161298322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	161298323	.	T	.	.	PASS	END=161298328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	161298329	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:51:60
chr1	161298330	.	T	.	.	PASS	END=161298338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	161309313	.	A	.	.	LowGQX	END=161309330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161309331	.	A	.	.	LowGQX	END=161309385	GT	./.
chr1	161309386	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161309387	.	C	.	.	LowGQX	END=161309388	GT	./.
chr1	161309389	.	T	.	.	LowGQX	END=161309390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161309391	.	C	.	.	LowGQX	END=161309394	GT	./.
chr1	161309395	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161309396	.	T	.	.	LowGQX	.	GT	./.
chr1	161309397	.	A	.	.	LowGQX	END=161309398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161309399	.	A	.	.	LowGQX	.	GT	./.
chr1	161309400	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161309401	.	C	.	.	LowGQX	END=161309402	GT	./.
chr1	161309403	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	161309404	.	T	.	.	LowGQX	END=161309407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161309408	.	C	.	.	LowGQX	.	GT	./.
chr1	161309409	.	T	.	.	LowGQX	END=161309411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161309412	.	A	.	.	LowGQX	.	GT	./.
chr1	161310325	.	C	.	.	PASS	END=161310328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:87:60
chr1	161310329	.	C	.	.	PASS	END=161310401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	161310402	.	G	.	.	PASS	END=161310453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:91:60
chr1	161310454	.	A	.	.	PASS	END=161310458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	161310459	.	T	.	.	PASS	END=161310477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	161310478	.	G	.	.	PASS	END=161310483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	161310484	.	T	.	.	PASS	END=161310496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	161326416	.	T	.	.	PASS	END=161326453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	161326454	.	G	.	.	PASS	END=161326578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:250:99:60
chr1	161326579	.	T	.	.	PASS	END=161326672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	161326673	.	T	.	.	PASS	END=161326681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	161332068	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	161332069	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr1	161332070	.	A	.	.	PASS	END=161332090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	161332091	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	161332092	.	T	.	48.05	LowGQX	DP=13;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:7:18.06:60:18
chr1	161332093	.	T	.	57.08	LowGQX	DP=14;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:11:11:27.09:60:27
chr1	161332094	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	161332095	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	161332096	.	T	.	.	PASS	END=161332105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	161332106	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:21:60
chr1	161332107	.	C	.	45.03	LowGQX	DP=13;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:10:13:15.04:60:15
chr1	161332108	.	T	.	.	PASS	END=161332110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	161332111	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	161332112	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:36:60
chr1	161332113	.	C	.	.	LowGQX	END=161332114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:24:60
chr1	161332115	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	161332116	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:60
chr1	161332117	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	161332118	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:58
chr1	161332119	.	A	.	.	PASS	END=161332122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:57
chr1	161332123	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:45:57
chr1	161332124	.	G	.	.	PASS	END=161332128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:55
chr1	161332129	.	T	.	.	PASS	END=161332131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:55
chr1	161332132	.	G	.	.	PASS	END=161332133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:55
chr1	161332134	.	A	.	.	PASS	END=161332135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:55
chr1	161332136	.	A	.	.	PASS	END=161332142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:55
chr1	161332143	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:45:55
chr1	161332144	.	A	.	.	PASS	END=161332150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:55
chr1	161332151	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:24:55
chr1	161332152	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:42:55
chr1	161332153	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:27:53
chr1	161332154	.	G	.	.	PASS	END=161332157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:33:52
chr1	161332158	.	T	.	.	PASS	END=161332159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:51
chr1	161332160	.	C	.	.	PASS	END=161332168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:33:49
chr1	161332169	.	A	.	.	PASS	END=161332191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:41
chr1	161332192	.	T	.	.	PASS	END=161332213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:39:38
chr1	161332214	.	A	.	.	PASS	END=161332218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:42:36
chr1	161332219	.	T	.	.	PASS	END=161332225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:39:35
chr1	161332226	.	A	.	.	PASS	END=161332230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:45:32
chr1	161332231	.	A	.	.	PASS	END=161332241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:33:30
chr1	161332242	.	A	.	.	PASS	END=161332253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:42:30
chr1	161332254	.	C	.	.	PASS	END=161332257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:39:31
chr1	161332258	.	T	.	.	PASS	END=161332264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:45:27
chr1	161332265	.	A	.	.	PASS	END=161332268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:39:26
chr1	161332269	.	A	.	.	PASS	END=161332271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:36:25
chr1	161332272	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:30:25
chr1	161332273	.	A	.	.	PASS	END=161332286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:42:25
chr1	161332287	.	C	.	.	PASS	END=161332288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:33:25
chr1	161332289	.	T	.	.	PASS	END=161332293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:36:25
chr1	161332294	.	A	.	.	PASS	END=161332298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:39:25
chr1	161332299	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:30:25
chr1	161332300	.	A	.	.	PASS	END=161332303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:36:25
chr1	161332304	.	T	.	.	PASS	END=161332309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:39:25
chr1	161332310	.	A	.	.	PASS	END=161332312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:30:25
chr1	161332313	.	T	.	.	PASS	END=161332314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:39:25
chr1	161332315	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:30:26
chr1	161332316	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:26
chr1	161332317	.	C	.	.	PASS	END=161332334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:33:26
chr1	161332335	.	T	.	.	PASS	END=161332345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:39:29
chr1	161332346	.	C	.	.	PASS	END=161332351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:33:33
chr1	161332352	.	T	.	.	PASS	END=161332357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:36:33
chr1	161332358	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:33:33
chr1	161332359	.	A	.	.	PASS	END=161332366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:33
chr1	161332367	.	A	.	.	PASS	END=161332371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:37
chr1	161332372	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:39
chr1	161332373	.	T	.	.	PASS	END=161332374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:41
chr1	161332375	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:41
chr1	161332376	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:41
chr1	161332377	.	A	.	.	LowGQX	END=161332378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:42
chr1	161332379	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:44
chr1	161332380	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:45
chr1	161332381	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:45
chr1	161334753	.	T	.	.	LowGQX	END=161334942	GT	./.
chr1	161335303	.	G	.	.	LowGQX	END=161335494	GT	./.
chr1	161335979	.	G	.	.	LowGQX	END=161336074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161336075	.	T	.	.	LowGQX	.	GT	./.
chr1	161336076	.	A	.	.	LowGQX	END=161336078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161336211	.	G	.	.	LowGQX	END=161336249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161336250	.	A	.	.	LowGQX	END=161336310	GT	./.
chr1	161337596	.	A	.	.	LowGQX	END=161337695	GT	./.
chr1	161475251	.	T	.	.	PASS	END=161475267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	161475268	.	A	.	.	PASS	END=161475350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	161475738	.	C	.	.	PASS	END=161475749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	161475750	.	G	A	3854.78	PASS	BaseQRankSum=0.984;DP=139;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=21.0404;MQ=60;MQ0=0;MQRankSum=-1.533;QD=27.73;ReadPosRankSum=1.483;SB=-2101.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,138:139:99:3855,256,0:60:99:0.993
chr1	161475751	.	T	.	.	PASS	END=161475824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	161475825	.	T	.	.	PASS	END=161475837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	161476123	.	G	.	.	PASS	END=161476129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	161476130	.	C	.	.	PASS	END=161476203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:58
chr1	161476204	.	C	T	1899.05	PASS	DP=73;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=9.4692;MQ=58;MQ0=0;QD=26.01;SB=-721.90	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,72:73:99:1932,147,0:58:99:1.000
chr1	161476205	.	A	G	1997.24	PASS	DP=74;Dels=0.00;FS=0.000;HRun=5;HaplotypeScore=9.4692;MQ=57;MQ0=0;QD=26.99;SB=-1053.83	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,74:74:99:2030,153,0:57:99:1.000
chr1	161476206	.	G	.	.	PASS	END=161476279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:49
chr1	161476280	.	C	.	.	PASS	END=161476366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:45
chr1	161476367	.	T	.	.	PASS	END=161476382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:50
chr1	161476383	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:66:52
chr1	161476384	.	C	.	.	PASS	END=161476394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:52
chr1	161476395	.	G	.	.	PASS	END=161476404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:55
chr1	161476405	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:51:55
chr1	161476406	.	G	.	.	PASS	END=161476424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:55
chr1	161476425	.	C	.	.	PASS	END=161476428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:58
chr1	161479608	.	A	.	.	PASS	END=161479654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	161479655	.	A	.	.	PASS	END=161479795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:59
chr1	161479796	.	A	.	.	PASS	END=161479838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	161479839	.	C	.	.	PASS	END=161479856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	161479857	.	T	.	.	PASS	END=161479866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	161480622	.	A	.	.	PASS	END=161480648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	161480649	.	A	G	1207.99	LowGQ;LowGQX	BaseQRankSum=-1.361;DP=50;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=6.6812;MQ=60;MQ0=0;MQRankSum=1.015;QD=24.16;ReadPosRankSum=-2.104;SB=-448.61	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,48:50:26.71:1241,27,0:60:27:0.960
chr1	161480650	.	A	.	.	PASS	END=161480662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	161480663	.	T	.	.	PASS	END=161480748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	161483654	.	C	.	.	PASS	END=161483655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:50
chr1	161483656	.	C	T	583.31	PASS	BaseQRankSum=2.993;DP=106;Dels=0.00;FS=4.048;HRun=1;HaplotypeScore=10.6266;MQ=50;MQ0=6;MQRankSum=-6.537;QD=5.50;ReadPosRankSum=-0.309;SB=-442.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:62,44:106:99:613,0,1544:50:99:0.415
chr1	161483657	.	T	.	.	PASS	END=161483713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:50
chr1	161483714	.	C	.	.	PASS	END=161483733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:53
chr1	161483734	.	C	.	.	PASS	END=161483749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:53
chr1	161483750	.	C	T	232.08	SB	BaseQRankSum=0.267;DP=54;Dels=0.00;FS=13.937;HRun=1;HaplotypeScore=2.8408;MQ=53;MQ0=0;MQRankSum=-5.262;QD=4.30;ReadPosRankSum=-1.530;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,15:54:99:262,0,973:53:99:0.283
chr1	161483751	.	T	.	.	PASS	END=161483753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:53
chr1	161487763	.	A	.	.	PASS	END=161487802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:50
chr1	161487803	.	A	.	.	PASS	END=161487879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:46
chr1	161487880	.	A	.	.	PASS	END=161487916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:43
chr1	161487917	.	C	.	.	PASS	END=161487936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:43
chr1	161487937	.	A	.	.	PASS	END=161487940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:45
chr1	161494436	.	A	.	.	LowGQX	END=161494616	GT	./.
chr1	161494617	.	G	.	.	LowGQX	END=161494630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	161494631	.	G	.	.	LowGQX	.	GT	./.
chr1	161494632	.	G	.	.	LowGQX	END=161494636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	161494637	.	G	.	.	LowGQX	END=161494639	GT	./.
chr1	161494640	.	C	.	.	LowGQX	END=161494655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	161494656	.	T	.	.	LowGQX	.	GT	./.
chr1	161494657	.	T	.	.	LowGQX	END=161494669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	161494670	.	G	.	.	LowGQX	.	GT	./.
chr1	161494671	.	C	.	.	LowGQX	END=161494673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	161494674	.	A	.	.	LowGQX	END=161494675	GT	./.
chr1	161494676	.	C	.	.	LowGQX	END=161494679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	161494680	.	C	.	.	LowGQX	.	GT	./.
chr1	161494681	.	G	.	.	LowGQX	END=161494682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	161494683	.	A	.	.	LowGQX	.	GT	./.
chr1	161494684	.	A	.	.	LowGQX	END=161494685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	161494686	.	T	.	.	LowGQX	.	GT	./.
chr1	161494687	.	T	.	.	LowGQX	END=161494691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	161494692	.	G	.	.	LowGQX	.	GT	./.
chr1	161494693	.	A	.	.	LowGQX	END=161494699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	161494700	.	G	.	.	LowGQX	.	GT	./.
chr1	161494701	.	G	.	.	LowGQX	END=161494706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	161494707	.	T	.	.	LowGQX	.	GT	./.
chr1	161494708	.	C	.	.	LowGQX	END=161494715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	161494716	.	A	.	.	LowGQX	.	GT	./.
chr1	161494717	.	A	.	.	LowGQX	END=161494727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	161494728	.	T	.	.	LowGQX	.	GT	./.
chr1	161494729	.	T	.	.	LowGQX	END=161494732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	161494733	.	G	.	.	LowGQX	.	GT	./.
chr1	161494734	.	G	.	.	LowGQX	END=161494761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	161494762	.	T	.	36	LowGQX	DP=3;MQ=32;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:32:6
chr1	161494763	.	G	.	.	LowGQX	END=161494817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:32
chr1	161494818	.	A	.	.	LowGQX	.	GT	./.
chr1	161494819	.	T	.	.	LowGQX	END=161494885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:34
chr1	161494886	.	C	.	.	LowGQX	END=161494937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	161494938	.	G	.	.	LowGQX	.	GT	./.
chr1	161494939	.	G	.	.	LowGQX	END=161495028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161495029	.	A	.	.	LowGQX	.	GT	./.
chr1	161495030	.	G	.	.	LowGQX	END=161495040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161495041	.	T	.	.	LowGQX	.	GT	./.
chr1	161495042	.	C	.	.	LowGQX	END=161495086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161495087	.	C	.	.	LowGQX	.	GT	./.
chr1	161495088	.	A	.	.	LowGQX	END=161495102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161495103	.	T	.	.	LowGQX	.	GT	./.
chr1	161495104	.	T	.	.	LowGQX	END=161495111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161495112	.	A	.	.	LowGQX	.	GT	./.
chr1	161495113	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161495114	.	A	.	.	LowGQX	.	GT	./.
chr1	161495115	.	G	.	.	LowGQX	END=161495129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr1	161495130	.	A	.	.	LowGQX	END=161495179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	161495180	.	G	.	.	LowGQX	.	GT	./.
chr1	161495181	.	G	.	.	LowGQX	END=161495183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	161495184	.	G	.	5.68	LowGQX	DP=1;MQ=40;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:40:0
chr1	161495185	.	A	.	.	LowGQX	END=161495223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	161495224	.	A	.	.	LowGQX	END=161495378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:53
chr1	161495379	.	C	.	.	LowGQX	END=161495476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161495477	.	A	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	161495478	.	C	.	.	LowGQX	END=161495498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161495499	.	T	.	.	LowGQX	END=161496382	GT	./.
chr1	161512800	.	G	.	.	PASS	END=161512846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	161512847	.	C	.	.	PASS	END=161512942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:56
chr1	161512943	.	T	.	.	PASS	END=161512990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:55
chr1	161512991	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:118:99:54
chr1	161514489	.	A	.	.	PASS	END=161514514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:41
chr1	161514515	.	T	.	.	PASS	END=161514541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:46
chr1	161514542	.	A	C	2194.16	PASS	BaseQRankSum=0.539;DP=96;Dels=0.00;FS=5.803;HRun=0;HaplotypeScore=9.5219;MQ=48;MQ0=6;MQRankSum=-0.607;QD=22.86;ReadPosRankSum=1.101;SB=-1261.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:3,93:96:71.62:2227,72,0:48:72:0.969
chr1	161514543	.	A	.	.	PASS	END=161514638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:48
chr1	161514639	.	C	.	.	PASS	END=161514666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:52
chr1	161514667	.	G	.	.	PASS	END=161514698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:49
chr1	161514699	.	A	.	.	PASS	END=161514715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:46
chr1	161514716	.	A	.	.	PASS	END=161514719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:45
chr1	161514720	.	C	.	.	PASS	END=161514727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:46
chr1	161514728	.	G	.	.	PASS	END=161514739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:37
chr1	161514740	.	A	.	.	PASS	END=161514744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:37
chr1	161514745	.	C	.	.	PASS	END=161514750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:36
chr1	161518209	.	A	.	.	PASS	END=161518265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:34
chr1	161518266	.	C	.	.	PASS	END=161518297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:45
chr1	161518298	.	C	.	.	PASS	END=161518332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:53
chr1	161518333	.	A	C,T	1528.47	PASS	BaseQRankSum=0.000;DP=82;Dels=0.00;FS=5.619;HaplotypeScore=6.6789;MQ=56;MQ0=6;MQRankSum=3.248;QD=18.64;ReadPosRankSum=0.251;SB=-826.26	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/2:11,34,37:82:99:1588,686,706,810,0,848:56:99:0.866
chr1	161518334	.	G	.	.	PASS	END=161518385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:56
chr1	161518386	.	C	.	.	PASS	END=161518461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:52
chr1	161518462	.	A	.	.	PASS	END=161518470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:50
chr1	161518762	.	G	.	.	LowGQX;LowMQ	END=161518764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:12:19
chr1	161518765	.	C	.	.	LowGQX;LowMQ	END=161518770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:15:19
chr1	161518771	.	G	.	.	LowGQX;LowMQ	END=161518772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:12:19
chr1	161518773	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:24:9:19
chr1	161518774	.	C	.	.	LowGQX	END=161518775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:12:20
chr1	161518776	.	A	.	.	LowGQX;LowMQ	END=161518784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:12:19
chr1	161518785	.	C	.	.	LowGQX;LowMQ	END=161518811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:9:18
chr1	161518812	.	C	.	.	LowGQX;LowMQ	END=161518821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:6:19
chr1	161518822	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:9:20
chr1	161518823	.	T	.	.	LowGQX;LowMQ	END=161518844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:3:14
chr1	161518845	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	161518846	.	T	.	.	LowGQX;LowMQ	END=161518848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:14
chr1	161518849	.	T	.	.	LowGQX;LowMQ	END=161518851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:6:15
chr1	161518852	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:18:3:15
chr1	161518853	.	T	.	.	LowGQX;LowMQ	END=161518855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:9:15
chr1	161518856	.	G	.	.	LowGQX;LowMQ	END=161518858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:3:15
chr1	161518859	.	C	.	.	LowGQX;LowMQ	END=161518861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:6:15
chr1	161519485	.	A	.	.	PASS	END=161519542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:59
chr1	161519543	.	G	.	.	PASS	END=161519560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:58
chr1	161519561	.	A	.	.	PASS	END=161519597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:58
chr1	161519598	.	A	.	.	PASS	END=161519624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	161519625	.	C	.	.	PASS	END=161519636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	161551176	.	G	.	.	LowGQX;LowMQ	END=161551339	GT	./.
chr1	161558112	.	G	.	.	LowGQX;LowMQ	END=161558271	GT	./.
chr1	161559328	.	C	.	.	LowGQX	END=161559338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161559339	.	C	.	.	LowGQX	.	GT	./.
chr1	161559340	.	T	.	.	LowGQX	END=161559365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161559366	.	G	.	.	LowGQX	.	GT	./.
chr1	161559367	.	C	.	.	LowGQX	END=161559394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161559395	.	C	.	.	LowGQX	.	GT	./.
chr1	161559396	.	A	.	.	LowGQX	END=161559401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161559402	.	C	.	.	LowGQX	.	GT	./.
chr1	161559403	.	T	.	.	LowGQX	END=161559410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161559411	.	G	.	.	LowGQX	END=161559468	GT	./.
chr1	161559469	.	G	.	.	LowGQX;LowMQ	END=161559609	GT	./.
chr1	161560933	.	G	.	.	LowGQX;LowMQ	END=161561188	GT	./.
chr1	161561857	.	A	.	.	LowGQX;LowMQ	END=161561862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:6:8
chr1	161561863	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:35:3:8
chr1	161561864	.	G	.	.	LowGQX;LowMQ	END=161561884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:6:7
chr1	161561885	.	G	.	.	LowGQX;LowMQ	END=161561924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:9:7
chr1	161561925	.	G	.	.	LowGQX;LowMQ	END=161561966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:9:7
chr1	161561967	.	T	.	.	LowGQX;LowMQ	END=161562001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:9:6
chr1	161562002	.	T	.	.	LowGQX;LowMQ	END=161562032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:3:4
chr1	161565342	.	G	.	.	PASS	END=161565358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:33
chr1	161565359	.	T	.	.	PASS	END=161565380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:37
chr1	161565381	.	A	G	880.36	PASS	DP=36;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.8321;MQ=41;MQ0=2;QD=24.45;SB=-280.60	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,36:36:72.21:913,72,0:41:72:1.000
chr1	161565382	.	T	.	.	PASS	END=161565387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:42
chr1	161565388	.	A	.	.	PASS	END=161565389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:51:43
chr1	161565390	.	C	.	.	PASS	END=161565392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:43
chr1	161565393	.	A	.	.	PASS	END=161565400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:51:43
chr1	161565401	.	C	.	.	PASS	END=161565414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:45
chr1	161565415	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:34:2:46
chr1	161565416	.	T	.	.	PASS	END=161565458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:46
chr1	161565459	.	G	.	.	PASS	END=161565476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:49
chr1	161565477	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:0:51
chr1	161565478	.	T	.	.	PASS	END=161565489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:52
chr1	161565490	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:18:52
chr1	161565491	.	T	.	.	PASS	END=161565507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:52
chr1	161565508	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:15:52
chr1	161565509	.	A	.	.	PASS	END=161565521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:52
chr1	161569395	.	A	.	.	PASS	END=161569418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:26
chr1	161569419	.	C	G	1412.97	PASS	BaseQRankSum=1.627;DP=87;Dels=0.00;FS=10.512;HRun=0;HaplotypeScore=6.6789;MQ=26;MQ0=24;MQRankSum=-2.411;QD=16.24;ReadPosRankSum=0.490;SB=-99.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,85:87:96.03:1446,96,0:26:96:0.977
chr1	161569420	.	C	.	.	PASS	END=161569454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:26
chr1	161569455	.	A	.	.	PASS	END=161569558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:29
chr1	161569559	.	T	.	.	PASS	END=161569593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:34
chr1	161576070	.	A	.	.	LowGQX;LowMQ	END=161576130	GT	./.
chr1	161576131	.	C	.	.	LowGQX	END=161576132	GT	./.
chr1	161576133	.	C	.	.	LowGQX	END=161576134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:23
chr1	161576135	.	T	.	.	LowGQX	END=161576136	GT	./.
chr1	161576137	.	C	.	.	LowGQX	END=161576138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:23
chr1	161576139	.	T	.	.	LowGQX	.	GT	./.
chr1	161576140	.	G	.	.	LowGQX	END=161576147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:23
chr1	161576148	.	T	.	.	LowGQX	END=161576149	GT	./.
chr1	161576150	.	C	.	.	LowGQX	END=161576152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:23
chr1	161576153	.	C	.	.	LowGQX	END=161576154	GT	./.
chr1	161576155	.	G	.	.	LowGQX	END=161576157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr1	161576158	.	C	.	.	LowGQX	END=161576161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	161576162	.	G	.	.	LowGQX	END=161576163	GT	./.
chr1	161576164	.	G	.	.	LowGQX	END=161576172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	161576173	.	G	.	.	LowGQX	.	GT	./.
chr1	161576174	.	G	.	.	LowGQX	END=161576179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	161576180	.	G	.	.	LowGQX	END=161576181	GT	./.
chr1	161576182	.	C	.	.	LowGQX	END=161576210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	161576211	.	T	.	.	LowGQX	.	GT	./.
chr1	161576212	.	G	.	.	LowGQX	END=161576215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	161576216	.	T	.	.	LowGQX	END=161576217	GT	./.
chr1	161576218	.	C	.	.	LowGQX	END=161576226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	161576227	.	C	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=40;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:40:3:1.000
chr1	161576228	.	G	.	.	LowGQX	END=161576237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	161576238	.	T	.	.	LowGQX	.	GT	./.
chr1	161576239	.	C	.	.	LowGQX	END=161576241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	161576242	.	G	.	.	LowGQX	.	GT	./.
chr1	161576243	.	G	.	.	LowGQX	END=161576281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	161576282	.	A	.	.	LowGQX	END=161576286	GT	./.
chr1	161576287	.	G	.	.	LowGQX	END=161576324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	161576325	.	A	.	.	LowGQX	.	GT	./.
chr1	161576326	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:48
chr1	161576327	.	A	.	.	LowGQX	.	GT	./.
chr1	161576328	.	C	.	.	LowGQX	END=161576348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	161576349	.	A	.	.	LowGQX	.	GT	./.
chr1	161576350	.	G	.	.	LowGQX	END=161576375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	161576376	.	A	.	.	LowGQX	.	GT	./.
chr1	161576377	.	G	.	.	LowGQX	END=161576383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	161576384	.	A	.	.	LowGQX	.	GT	./.
chr1	161576385	.	A	.	.	LowGQX	END=161576405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	161576406	.	A	.	.	LowGQX	.	GT	./.
chr1	161576407	.	C	.	.	LowGQX	END=161576417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	161576418	.	A	.	.	LowGQX	.	GT	./.
chr1	161576419	.	C	.	.	LowGQX	END=161576420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	161576421	.	A	.	.	LowGQX	.	GT	./.
chr1	161576422	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:48
chr1	161576423	.	A	.	.	LowGQX	.	GT	./.
chr1	161576424	.	C	.	.	LowGQX	END=161576425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	161576426	.	T	.	.	LowGQX	.	GT	./.
chr1	161576427	.	T	.	.	LowGQX	END=161576437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	161576438	.	G	.	.	LowGQX	END=161576442	GT	./.
chr1	161576443	.	C	.	.	LowGQX	END=161576446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161576447	.	T	.	.	LowGQX	.	GT	./.
chr1	161576448	.	C	.	.	LowGQX	END=161576453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161576454	.	T	.	.	LowGQX	.	GT	./.
chr1	161576455	.	G	.	.	LowGQX	END=161576465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161576466	.	T	.	.	LowGQX	.	GT	./.
chr1	161576467	.	G	.	.	LowGQX	END=161576470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161576471	.	G	.	.	LowGQX	END=161576472	GT	./.
chr1	161576473	.	G	.	.	LowGQX	END=161576522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161576523	.	T	.	.	LowGQX	.	GT	./.
chr1	161576524	.	G	.	.	LowGQX	END=161576538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161576539	.	T	.	.	LowGQX	.	GT	./.
chr1	161576540	.	A	.	.	LowGQX	END=161576585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161576586	.	T	.	.	LowGQX	.	GT	./.
chr1	161576587	.	C	.	.	LowGQX	END=161576592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161576593	.	G	.	.	LowGQX	END=161576855	GT	./.
chr1	161576856	.	A	.	.	LowGQX	END=161576927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr1	161576928	.	C	.	.	LowGQX	END=161577002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:55
chr1	161577003	.	G	.	.	LowGQX	END=161577008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:54
chr1	161577009	.	A	.	.	LowGQX	.	GT	./.
chr1	161577010	.	C	.	.	LowGQX	END=161577024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:54
chr1	161577025	.	C	.	.	LowGQX	.	GT	./.
chr1	161577026	.	C	.	.	LowGQX	END=161577047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:54
chr1	161577048	.	T	.	.	LowGQX	.	GT	./.
chr1	161577049	.	G	.	.	LowGQX	END=161577065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:54
chr1	161577066	.	A	.	.	LowGQX	.	GT	./.
chr1	161577067	.	C	.	.	LowGQX	END=161577075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:54
chr1	161577076	.	G	.	.	LowGQX	.	GT	./.
chr1	161577077	.	A	.	.	LowGQX	END=161577078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:54
chr1	161577079	.	T	.	.	LowGQX	END=161577080	GT	./.
chr1	161577081	.	A	.	.	LowGQX	END=161577084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161577085	.	C	.	.	LowGQX	END=161577086	GT	./.
chr1	161577087	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161577088	.	C	.	.	LowGQX	.	GT	./.
chr1	161577089	.	G	.	.	LowGQX	END=161577104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161577105	.	T	.	.	LowGQX	.	GT	./.
chr1	161577106	.	C	.	.	LowGQX	END=161577110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161577111	.	C	.	.	LowGQX	.	GT	./.
chr1	161577112	.	G	.	.	LowGQX	END=161577131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161577132	.	T	.	.	LowGQX	END=161577184	GT	./.
chr1	161594303	.	C	.	.	PASS	END=161594398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:52
chr1	161594399	.	G	.	.	PASS	END=161594430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:50
chr1	161594431	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:122:99:50
chr1	161595933	.	A	.	.	PASS	END=161595953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:53
chr1	161595954	.	C	.	.	PASS	END=161596194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:53
chr1	161599555	.	T	.	.	PASS	END=161599587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:48:24
chr1	161599588	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:44:25:25
chr1	161599589	.	C	.	.	PASS	END=161599596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:54:25
chr1	161599597	.	C	.	.	PASS	END=161599622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:63:27
chr1	161599623	.	C	.	.	PASS	END=161599667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:28
chr1	161599668	.	G	.	.	PASS	END=161599692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:84:37
chr1	161599693	.	T	C	1258.28	PASS	DP=57;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.7338;MQ=38;MQ0=6;QD=22.08;SB=-721.60	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,56:57:99:1291,105,0:38:99:1.000
chr1	161599694	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:99:38
chr1	161599695	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:61:39
chr1	161599696	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:96:39
chr1	161599697	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:58:39
chr1	161599698	.	A	.	.	PASS	END=161599729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:96:39
chr1	161599730	.	G	.	.	PASS	END=161599790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:48
chr1	161599791	.	A	.	.	PASS	END=161599834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:50
chr1	161600119	.	G	.	.	PASS	END=161600132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:47
chr1	161600133	.	A	.	.	PASS	END=161600188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:49
chr1	161600189	.	A	C	799.04	PASS	BaseQRankSum=0.205;DP=164;Dels=0.00;FS=1.597;HRun=0;HaplotypeScore=9.4801;MQ=51;MQ0=0;MQRankSum=2.961;QD=4.87;ReadPosRankSum=-0.205;SB=-406.92	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:131,33:164:99:829,0,3090:51:99:0.201
chr1	161600190	.	A	.	.	PASS	END=161600218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:49
chr1	161600843	.	A	.	.	PASS	END=161600878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:57
chr1	161600879	.	C	.	.	PASS	END=161600897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:56
chr1	161600898	.	A	.	.	PASS	END=161600946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:56
chr1	161600947	.	C	.	.	PASS	END=161600966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:59
chr1	161600967	.	A	.	.	PASS	END=161600968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	161600969	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:63:60
chr1	161600970	.	C	.	.	PASS	END=161600992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	161632979	.	T	.	.	LowGQX;LowMQ	END=161633059	GT	./.
chr1	161633060	.	T	.	.	LowGQX;LowMQ	END=161633063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:3:3
chr1	161633064	.	C	.	.	LowGQX;LowMQ	END=161633065	GT	./.
chr1	161633066	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:118:3:2
chr1	161633067	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	161633068	.	G	.	.	LowGQX;LowMQ	END=161633071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:6:4
chr1	161633072	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:125:3:4
chr1	161633073	.	T	.	.	LowGQX;LowMQ	END=161633084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:6:4
chr1	161633085	.	C	.	.	LowGQX;LowMQ	END=161633088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:9:5
chr1	161633089	.	A	.	.	LowGQX;LowMQ	END=161633095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:6:5
chr1	161633096	.	C	.	.	LowGQX;LowMQ	END=161633099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:9:5
chr1	161633100	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:132:3:5
chr1	161633101	.	C	.	.	LowGQX;LowMQ	END=161633103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:6:5
chr1	161633104	.	T	.	.	LowGQX;LowMQ	END=161633105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:12:5
chr1	161633106	.	G	.	.	LowGQX;LowMQ	END=161633108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:6:5
chr1	161633109	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:125:12:5
chr1	161633110	.	C	.	.	LowGQX;LowMQ	END=161633111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:3:5
chr1	161633112	.	T	.	.	LowGQX;LowMQ	END=161633118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:9:5
chr1	161633119	.	C	.	.	LowGQX;LowMQ	END=161633121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:6:5
chr1	161633122	.	T	.	.	LowGQX;LowMQ	END=161633125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:9:5
chr1	161633126	.	C	.	.	LowGQX;LowMQ	END=161633127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:6:5
chr1	161633128	.	G	.	.	LowGQX;LowMQ	END=161633131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:9:5
chr1	161633132	.	T	.	.	LowGQX;LowMQ	END=161633136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:6:5
chr1	161633137	.	T	.	.	LowGQX;LowMQ	END=161633144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:9:5
chr1	161633145	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:94:6:6
chr1	161633146	.	G	.	.	LowGQX;LowMQ	END=161633147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:9:6
chr1	161633148	.	G	.	.	LowGQX;LowMQ	END=161633149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:6:6
chr1	161633150	.	C	.	.	LowGQX;LowMQ	END=161633153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:9:6
chr1	161633154	.	G	.	.	LowGQX;LowMQ	END=161633155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:6:6
chr1	161633156	.	C	.	.	LowGQX;LowMQ	END=161633158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:9:6
chr1	161633159	.	C	.	.	LowGQX;LowMQ	END=161633160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:3:6
chr1	161633161	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:78:9:6
chr1	161633220	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	161633221	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:34:3:5
chr1	161633222	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	161633223	.	T	.	.	LowGQX;LowMQ	END=161633225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:3:5
chr1	161633226	.	G	.	.	LowGQX;LowMQ	END=161633227	GT	./.
chr1	161633228	.	A	.	.	LowGQX;LowMQ	END=161633231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:3:5
chr1	161633232	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	161633233	.	G	.	.	LowGQX;LowMQ	END=161633234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:3:5
chr1	161633235	.	C	.	.	LowGQX;LowMQ	END=161633379	GT	./.
chr1	161639943	.	G	.	.	LowGQX;LowMQ	END=161640102	GT	./.
chr1	161641180	.	A	.	.	PASS	END=161641198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	161641199	.	G	.	.	PASS	END=161641338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:49
chr1	161641339	.	C	.	.	PASS	END=161641397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:43
chr1	161641398	.	A	.	.	PASS	END=161641428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:41
chr1	161641429	.	T	.	.	PASS	END=161641441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:45
chr1	161642763	.	A	.	.	PASS	END=161642845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:45
chr1	161642846	.	A	.	.	PASS	END=161642956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:34
chr1	161642957	.	A	.	.	PASS	END=161642990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:45
chr1	161642991	.	A	.	.	PASS	END=161643016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:49
chr1	161643017	.	A	.	.	PASS	END=161643021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:52
chr1	161643233	.	T	.	.	LowGQX	END=161643235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:37
chr1	161643236	.	T	.	33	LowGQX	DP=4;MQ=37;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:37:3
chr1	161643237	.	T	.	.	LowGQX	.	GT	./.
chr1	161643238	.	C	.	.	LowGQX	END=161643266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:33
chr1	161643267	.	G	.	.	LowGQX	END=161643304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:33
chr1	161643305	.	T	.	.	LowGQX	END=161643332	GT	./.
chr1	161643687	.	C	.	.	LowGQX;LowMQ	END=161643688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:6:8
chr1	161643689	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	161643690	.	T	.	.	LowGQX;LowMQ	END=161643701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:3:6
chr1	161643702	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	161643703	.	G	.	.	LowGQX;LowMQ	END=161643735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:3:5
chr1	161643736	.	T	.	.	LowGQX;LowMQ	END=161643739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:3:5
chr1	161643740	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	161643741	.	C	.	.	LowGQX;LowMQ	END=161643747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:3:5
chr1	161643748	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	161643749	.	G	.	.	LowGQX;LowMQ	END=161643766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:3:5
chr1	161643767	.	A	.	.	LowGQX;LowMQ	END=161643822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:6:7
chr1	161643823	.	T	.	.	LowGQX;LowMQ	END=161643830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:9:7
chr1	161643831	.	C	.	.	LowGQX;LowMQ	END=161643838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:6:7
chr1	161643839	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:87:3:7
chr1	161643840	.	A	.	.	LowGQX;LowMQ	END=161643851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:6:7
chr1	161643852	.	A	.	.	LowGQX;LowMQ	END=161643856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:3:7
chr1	161643857	.	A	.	.	LowGQX;LowMQ	END=161643888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:6:7
chr1	161643889	.	G	T	74.96	LowGQ;LowGQX;LowMQ;LowQD	DP=76;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=7;MQ0=72;QD=0.99;SB=-30.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,76:76:9.03:107,9,0:7:9:1.000
chr1	161643890	.	G	.	.	LowGQX;LowMQ	END=161643892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:6:7
chr1	161643893	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:72:3:7
chr1	161643894	.	T	.	.	LowGQX;LowMQ	END=161643911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:6:7
chr1	161643912	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:55:3:8
chr1	161643913	.	G	.	.	LowGQX;LowMQ	END=161643916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:6:7
chr1	161643917	.	C	.	.	LowGQX;LowMQ	END=161643933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:3:4
chr1	161643934	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	161643935	.	A	.	.	LowGQX;LowMQ	END=161643943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:3:4
chr1	161643944	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	161643945	.	T	.	.	LowGQX;LowMQ	END=161643952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:3:4
chr1	161644975	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:93:53
chr1	161644976	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:51:53
chr1	161644977	.	C	.	.	PASS	END=161645023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:51
chr1	161645024	.	A	.	.	PASS	END=161645040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:51
chr1	161645041	.	T	.	.	PASS	END=161645103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:95:53
chr1	161645104	.	G	.	.	PASS	END=161645125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:54
chr1	161647036	.	T	.	.	PASS	END=161647047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	161647048	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:72:60
chr1	161647049	.	T	.	.	PASS	END=161647072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:91:60
chr1	161647073	.	C	.	.	PASS	END=161647098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	161647099	.	T	.	.	PASS	END=161647169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	161647170	.	C	.	.	PASS	END=161647186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	161647204	.	C	.	.	PASS	END=161647328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	161647329	.	C	.	.	PASS	END=161647354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	161676971	.	A	.	.	LowGQX	END=161677135	GT	./.
chr1	161680224	.	T	.	.	LowGQX	END=161680323	GT	./.
chr1	161680464	.	T	.	.	LowGQX	END=161680704	GT	./.
chr1	161680996	.	A	.	.	LowGQX	END=161681091	GT	./.
chr1	161681092	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161681093	.	G	.	.	LowGQX	.	GT	./.
chr1	161681094	.	T	.	.	LowGQX	END=161681096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161681097	.	C	.	.	LowGQX	.	GT	./.
chr1	161681098	.	C	.	.	LowGQX	END=161681104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161681105	.	C	.	.	LowGQX	.	GT	./.
chr1	161681106	.	G	.	.	LowGQX	END=161681113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161681114	.	T	.	.	LowGQX	.	GT	./.
chr1	161681115	.	C	.	.	LowGQX	END=161681116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161681117	.	G	.	.	LowGQX	.	GT	./.
chr1	161681118	.	C	.	.	LowGQX	END=161681121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161681122	.	G	.	.	LowGQX	.	GT	./.
chr1	161681123	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161681124	.	G	.	.	LowGQX	.	GT	./.
chr1	161681125	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161681126	.	C	.	.	LowGQX	.	GT	./.
chr1	161681127	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161681128	.	C	.	.	LowGQX	END=161681130	GT	./.
chr1	161681131	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	161681132	.	G	.	.	LowGQX	END=161681134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161681135	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	161681136	.	C	.	.	LowGQX	END=161681144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161681145	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	161681146	.	A	.	.	LowGQX	END=161681154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161681155	.	C	.	.	LowGQX	.	GT	./.
chr1	161681156	.	A	.	.	LowGQX	END=161681158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161681159	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	161681160	.	T	.	.	LowGQX	.	GT	./.
chr1	161681161	.	G	.	.	LowGQX	END=161681170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161681171	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	161681172	.	C	.	.	LowGQX	END=161681174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161681175	.	A	.	.	LowGQX	.	GT	./.
chr1	161681176	.	C	.	.	LowGQX	END=161681189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161681190	.	A	.	.	LowGQX	END=161681193	GT	./.
chr1	161681194	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	161681195	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161681196	.	G	.	.	LowGQX	.	GT	./.
chr1	161681197	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161681198	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	161681199	.	G	.	.	LowGQX	.	GT	./.
chr1	161681200	.	C	.	.	LowGQX	END=161681211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161681212	.	C	.	.	LowGQX	END=161681266	GT	./.
chr1	161681722	.	A	.	.	LowGQX	END=161682010	GT	./.
chr1	161682873	.	A	.	.	LowGQX	END=161682893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161682894	.	A	.	.	LowGQX	END=161682895	GT	./.
chr1	161682896	.	C	.	.	LowGQX	END=161682897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161682898	.	C	.	.	LowGQX	END=161682981	GT	./.
chr1	161682982	.	A	.	.	LowGQX	END=161683020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161683021	.	G	.	.	LowGQX	.	GT	./.
chr1	161683022	.	G	.	.	LowGQX	END=161683047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161683048	.	C	.	.	LowGQX	.	GT	./.
chr1	161683049	.	A	.	.	LowGQX	END=161683132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161683133	.	A	.	.	LowGQX	END=161683172	GT	./.
chr1	161692429	.	C	.	.	LowGQX	END=161692528	GT	./.
chr1	161692740	.	T	.	.	LowGQX	END=161692779	GT	./.
chr1	161692780	.	T	.	.	LowGQX	END=161692797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161692798	.	T	.	.	LowGQX	.	GT	./.
chr1	161692799	.	G	.	.	LowGQX	END=161692828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161692829	.	T	.	.	LowGQX	.	GT	./.
chr1	161692830	.	T	.	.	LowGQX	END=161692832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161692833	.	A	.	.	LowGQX	.	GT	./.
chr1	161692834	.	C	.	.	LowGQX	END=161692837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161692838	.	T	.	.	LowGQX	.	GT	./.
chr1	161692839	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161693155	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	161693156	.	G	.	.	LowGQX	END=161693169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161693170	.	G	.	.	LowGQX	.	GT	./.
chr1	161693171	.	C	.	.	LowGQX	END=161693189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161693190	.	C	.	.	LowGQX	.	GT	./.
chr1	161693191	.	A	.	.	LowGQX	END=161693269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161693270	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	161693271	.	C	.	.	LowGQX	END=161693297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161693298	.	A	.	.	LowGQX	.	GT	./.
chr1	161693299	.	C	.	.	LowGQX	END=161693413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161695609	.	A	.	.	LowGQX	END=161695879	GT	./.
chr1	161695912	.	A	.	.	LowGQX	END=161696785	GT	./.
chr1	161697035	.	A	.	.	LowGQX	END=161697435	GT	./.
chr1	161697436	.	C	.	.	LowGQX	END=161697454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161719580	.	C	.	.	LowGQX	END=161719937	GT	./.
chr1	161721456	.	A	.	.	LowGQX	END=161721546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161721547	.	T	.	.	LowGQX	END=161721565	GT	./.
chr1	161721566	.	G	.	.	LowGQX	END=161721573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161721654	.	A	.	.	LowGQX	END=161721684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161721685	.	A	.	.	LowGQX	.	GT	./.
chr1	161721686	.	A	.	.	LowGQX	END=161721743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161721744	.	C	.	.	LowGQX	.	GT	./.
chr1	161721745	.	G	.	.	LowGQX	END=161721747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161721748	.	T	.	.	LowGQX	.	GT	./.
chr1	161721749	.	A	.	.	LowGQX	END=161721750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161721751	.	A	.	.	LowGQX	.	GT	./.
chr1	161721752	.	A	.	.	LowGQX	END=161721773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161721774	.	G	.	.	LowGQX	.	GT	./.
chr1	161721775	.	G	.	.	LowGQX	END=161721776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161722156	.	A	.	.	LowGQX	END=161722256	GT	./.
chr1	161722863	.	A	.	.	LowGQX	END=161723000	GT	./.
chr1	161723001	.	G	.	.	LowGQX	END=161723045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161723046	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	161723047	.	G	.	.	LowGQX	END=161723050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161723051	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	161723052	.	G	.	.	LowGQX	END=161723053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161726574	.	A	.	.	LowGQX	END=161726739	GT	./.
chr1	161736089	.	T	.	.	PASS	END=161736118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	161736119	.	T	.	.	PASS	END=161736177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	161736178	.	A	.	.	PASS	END=161736241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	161748023	.	T	.	.	PASS	END=161748055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	161748056	.	C	T	1181.87	PASS	BaseQRankSum=4.168;DP=103;Dels=0.00;FS=0.770;HRun=1;HaplotypeScore=2.8930;MQ=60;MQ0=0;MQRankSum=-1.334;QD=11.47;ReadPosRankSum=0.639;SB=-603.16	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:56,47:103:99:1212,0,1376:60:99:0.456
chr1	161748057	.	G	.	.	PASS	END=161748107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	161748108	.	T	.	.	PASS	END=161748119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	161748120	.	T	.	.	PASS	END=161748122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	161751696	.	C	.	.	PASS	END=161751788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	161751789	.	G	.	.	PASS	END=161751809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	161751810	.	T	.	.	PASS	END=161751849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	161753778	.	A	.	.	PASS	END=161753786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	161753787	.	T	.	.	PASS	END=161753801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	161753802	.	T	C	744.48	PASS	BaseQRankSum=-0.484;DP=61;Dels=0.00;FS=3.770;HRun=2;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=-0.787;QD=12.20;ReadPosRankSum=1.264;SB=-273.84	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:32,29:61:99:774,0,825:60:99:0.475
chr1	161753803	.	C	.	.	PASS	END=161753836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	161753837	.	T	.	.	PASS	END=161753840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	161753841	.	G	A	964.92	PASS	BaseQRankSum=2.300;DP=81;Dels=0.00;FS=0.946;HRun=0;HaplotypeScore=3.8404;MQ=60;MQ0=0;MQRankSum=0.562;QD=11.91;ReadPosRankSum=-0.250;SB=-471.98	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:40,41:81:99:995,0,898:60:99:0.506
chr1	161753842	.	T	.	.	PASS	END=161753888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	161761196	.	A	.	.	PASS	END=161761275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	161761276	.	G	C	896.57	PASS	BaseQRankSum=0.525;DP=82;Dels=0.00;FS=2.024;HRun=1;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=-1.148;QD=10.93;ReadPosRankSum=0.860;SB=-381.64	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,38:82:99:927,0,1100:60:99:0.463
chr1	161761277	.	C	.	.	PASS	END=161761306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	161761307	.	C	.	.	PASS	END=161761311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	161761312	.	C	T	818.18	PASS	BaseQRankSum=0.896;DP=61;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=5.7343;MQ=60;MQ0=0;MQRankSum=-0.482;QD=13.41;ReadPosRankSum=0.852;SB=-229.90	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,32:61:99:848,0,744:60:99:0.533
chr1	161761313	.	C	.	.	PASS	END=161761329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	161761912	.	A	.	.	PASS	END=161762011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	161762012	.	A	.	.	PASS	END=161762109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	161762110	.	C	.	.	PASS	END=161762119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	161771840	.	A	.	.	PASS	END=161771868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	161771869	.	C	.	.	PASS	END=161771904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	161771905	.	C	.	.	PASS	END=161772035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	161772036	.	A	.	.	PASS	END=161772064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	161789421	.	A	.	.	PASS	END=161789430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	161789431	.	G	.	.	PASS	END=161789452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	161789453	.	A	.	.	PASS	END=161789498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	161789499	.	A	.	.	PASS	END=161789581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	161789582	.	C	.	.	PASS	END=161789610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	161790856	.	T	.	.	PASS	END=161790943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	161790944	.	C	.	.	PASS	END=161790955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	161816237	.	A	.	.	PASS	END=161816268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	161816269	.	C	.	.	PASS	END=161816354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:97:60
chr1	161816355	.	A	.	.	PASS	END=161816372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	161821510	.	A	.	.	PASS	END=161821612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	161821613	.	C	.	.	PASS	END=161821627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	161823012	.	A	.	.	PASS	END=161823037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	161823038	.	G	.	.	PASS	END=161823168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	161823169	.	C	.	.	PASS	END=161823171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	161829983	.	T	.	.	PASS	END=161830074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	161830075	.	A	.	.	PASS	END=161830082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	161832986	.	A	.	.	PASS	END=161832993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	161832994	.	C	.	.	PASS	END=161833006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	161833007	.	C	.	.	PASS	END=161833014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	161833015	.	G	.	.	PASS	END=161833026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	161833027	.	A	.	.	PASS	END=161833117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	161882079	.	A	.	.	PASS	END=161882103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	161882104	.	G	.	.	PASS	END=161882117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	161882118	.	C	.	.	PASS	END=161882178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	161928234	.	A	.	.	PASS	END=161928257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	161928258	.	C	.	.	PASS	END=161928298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	161928299	.	C	.	.	PASS	END=161928326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:60
chr1	161928327	.	A	G	2942.42	PASS	BaseQRankSum=-0.397;DP=264;Dels=0.00;FS=3.495;HRun=1;HaplotypeScore=27.4607;MQ=60;MQ0=0;MQRankSum=-0.004;QD=11.15;ReadPosRankSum=0.072;SB=-1591.68	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:137,126:264:99:2972,0,3260:60:99:0.479
chr1	161928328	.	G	.	.	PASS	END=161928405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	161928406	.	A	.	.	PASS	END=161928428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	161928429	.	T	.	.	PASS	END=161928444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	161928445	.	C	.	.	PASS	END=161928446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	161953463	.	T	.	.	LowGQX	END=161953764	GT	./.
chr1	161953765	.	G	.	.	LowGQX	END=161953783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161953784	.	A	.	.	LowGQX	.	GT	./.
chr1	161953785	.	C	.	.	LowGQX	END=161953825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161953826	.	A	.	.	LowGQX	.	GT	./.
chr1	161953827	.	G	.	.	LowGQX	END=161953923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161953924	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	161953925	.	C	.	.	LowGQX	END=161953932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	161953933	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	161953934	.	A	.	.	LowGQX	END=161953955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	161953956	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	161953957	.	C	.	.	LowGQX	END=161953980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	161953981	.	G	T	3.07	LowGQX;LowQD;SB	BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.02;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:30.11:30,0,33:60:3:0.667
chr1	161953982	.	C	.	.	LowGQX	END=161954013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161954014	.	G	.	.	LowGQX	.	GT	./.
chr1	161954015	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161954016	.	G	.	.	LowGQX	.	GT	./.
chr1	161954017	.	G	.	.	LowGQX	END=161954023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161954024	.	C	.	.	LowGQX	END=161954025	GT	./.
chr1	161954026	.	G	.	.	LowGQX	END=161954028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161954029	.	C	.	.	LowGQX	.	GT	./.
chr1	161954030	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161954031	.	A	.	.	LowGQX	END=161954032	GT	./.
chr1	161954033	.	C	.	.	LowGQX	END=161954040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161954041	.	G	.	.	LowGQX	.	GT	./.
chr1	161954042	.	A	.	.	LowGQX	END=161954049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161954050	.	G	.	.	LowGQX	.	GT	./.
chr1	161954051	.	G	.	.	LowGQX	END=161954056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161954057	.	C	.	.	LowGQX	.	GT	./.
chr1	161954058	.	T	.	.	LowGQX	END=161954059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161954060	.	C	.	.	LowGQX	.	GT	./.
chr1	161954061	.	A	.	.	LowGQX	END=161954063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161954064	.	G	.	.	LowGQX	END=161954065	GT	./.
chr1	161954066	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161954067	.	C	.	.	LowGQX	.	GT	./.
chr1	161954068	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161954592	.	A	.	.	LowGQX	END=161954772	GT	./.
chr1	161967613	.	A	.	.	LowGQX	END=161967824	GT	./.
chr1	161967825	.	C	.	.	LowGQX	END=161967835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161967836	.	G	.	.	LowGQX	.	GT	./.
chr1	161967837	.	C	.	.	LowGQX	END=161967839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161967840	.	G	.	.	LowGQX	.	GT	./.
chr1	161967841	.	T	.	.	LowGQX	END=161967844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161967845	.	T	.	.	LowGQX	.	GT	./.
chr1	161967846	.	G	.	.	LowGQX	END=161967851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161967852	.	A	.	.	LowGQX	.	GT	./.
chr1	161967853	.	A	.	.	LowGQX	END=161967856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161967857	.	T	.	.	LowGQX	.	GT	./.
chr1	161967858	.	G	.	.	LowGQX	END=161967865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161967866	.	G	.	.	LowGQX	.	GT	./.
chr1	161967867	.	A	.	.	LowGQX	END=161967870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161967871	.	C	.	.	LowGQX	.	GT	./.
chr1	161967872	.	C	.	.	LowGQX	END=161967878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161967879	.	G	.	.	LowGQX	.	GT	./.
chr1	161967880	.	A	.	.	LowGQX	END=161967882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161967883	.	T	.	.	LowGQX	.	GT	./.
chr1	161967884	.	G	.	.	LowGQX	END=161967891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161967892	.	C	.	.	LowGQX	.	GT	./.
chr1	161967893	.	G	.	.	LowGQX	END=161967896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161967897	.	T	.	.	LowGQX	.	GT	./.
chr1	161967898	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161967899	.	G	.	.	LowGQX	END=161967900	GT	./.
chr1	161967901	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161967902	.	T	.	.	LowGQX	END=161967904	GT	./.
chr1	161967905	.	A	.	.	LowGQX	END=161967916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161967917	.	A	.	.	LowGQX	.	GT	./.
chr1	161967918	.	C	.	.	LowGQX	END=161967950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161967951	.	T	.	.	LowGQX	.	GT	./.
chr1	161967952	.	C	.	.	LowGQX	END=161967968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161967969	.	C	.	.	LowGQX	.	GT	./.
chr1	161967970	.	T	.	.	LowGQX	END=161967975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161967976	.	C	.	.	LowGQX	.	GT	./.
chr1	161967977	.	C	.	.	LowGQX	END=161967987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161967988	.	C	.	.	LowGQX	END=161967989	GT	./.
chr1	161967990	.	G	.	.	LowGQX	END=161968006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161968007	.	G	.	.	LowGQX	.	GT	./.
chr1	161968008	.	T	.	.	LowGQX	END=161968020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161968021	.	G	.	.	LowGQX	.	GT	./.
chr1	161968022	.	T	.	.	LowGQX	END=161968023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161968024	.	T	.	.	LowGQX	.	GT	./.
chr1	161968025	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161968026	.	C	.	.	LowGQX	.	GT	./.
chr1	161968027	.	C	.	.	LowGQX	END=161968036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161968037	.	G	.	.	LowGQX	.	GT	./.
chr1	161968038	.	C	.	.	LowGQX	END=161968045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161968046	.	C	.	.	LowGQX	.	GT	./.
chr1	161968047	.	T	.	.	LowGQX	END=161968068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161968069	.	G	.	.	LowGQX	END=161968141	GT	./.
chr1	161969901	.	A	.	.	LowGQX	END=161970131	GT	./.
chr1	161976085	.	A	.	.	LowGQX	END=161976265	GT	./.
chr1	161987138	.	A	.	.	LowGQX	END=161987299	GT	./.
chr1	161989707	.	A	.	.	LowGQX	END=161989974	GT	./.
chr1	161993045	.	A	.	.	LowGQX	END=161993127	GT	./.
chr1	161993128	.	G	.	.	LowGQX	END=161993129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161993130	.	G	.	.	LowGQX	.	GT	./.
chr1	161993131	.	C	.	.	LowGQX	END=161993135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161993136	.	T	.	.	LowGQX	.	GT	./.
chr1	161993137	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161993138	.	G	.	.	LowGQX	.	GT	./.
chr1	161993139	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161993140	.	C	.	.	LowGQX	.	GT	./.
chr1	161993141	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161993142	.	C	.	.	LowGQX	.	GT	./.
chr1	161993143	.	T	.	.	LowGQX	END=161993159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161993160	.	A	.	.	LowGQX	.	GT	./.
chr1	161993161	.	C	.	.	LowGQX	END=161993167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161993168	.	G	.	.	LowGQX	.	GT	./.
chr1	161993169	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161993170	.	C	.	.	LowGQX	.	GT	./.
chr1	161993171	.	G	.	.	LowGQX	END=161993173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161993174	.	A	.	.	LowGQX	.	GT	./.
chr1	161993175	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161993176	.	C	.	.	LowGQX	END=161993180	GT	./.
chr1	161993181	.	T	.	.	LowGQX	END=161993184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161993185	.	A	.	.	LowGQX	.	GT	./.
chr1	161993186	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161993187	.	C	.	.	LowGQX	.	GT	./.
chr1	161993188	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161993189	.	A	.	.	LowGQX	.	GT	./.
chr1	161993190	.	A	.	.	LowGQX	END=161993191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161993192	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	161993193	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161993194	.	G	.	.	LowGQX	.	GT	./.
chr1	161993195	.	A	.	.	LowGQX	END=161993197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	161993198	.	A	.	.	LowGQX	END=161993199	GT	./.
chr1	161993200	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161993201	.	A	.	.	LowGQX	.	GT	./.
chr1	161993202	.	G	.	.	LowGQX	END=161993210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161993211	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	161993212	.	C	.	.	LowGQX	END=161993218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	161993219	.	A	.	.	LowGQX	.	GT	./.
chr1	161993220	.	T	.	.	LowGQX	END=161993222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	162039917	.	C	.	.	PASS	END=162039938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	162039939	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:57:60
chr1	162039940	.	C	.	.	PASS	END=162039952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:90:60
chr1	162039953	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:63:60
chr1	162039954	.	C	.	.	PASS	END=162040035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	162040036	.	G	.	.	PASS	END=162040049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	162040050	.	A	.	.	PASS	END=162040064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	162040065	.	A	.	.	PASS	END=162040073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	162040074	.	T	.	.	PASS	END=162040076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	162040077	.	G	.	.	PASS	END=162040080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	162040081	.	G	.	.	PASS	END=162040082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	162040083	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:45:60
chr1	162040084	.	C	.	.	PASS	END=162040088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	162040089	.	G	.	.	PASS	END=162040097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	162040098	.	A	.	.	PASS	END=162040102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	162040103	.	T	.	.	PASS	END=162040105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	162040106	.	T	.	60.08	PASS	DP=16;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:12:16:30.09:60:30
chr1	162040107	.	G	.	.	PASS	END=162040112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	162040113	.	T	.	57.08	LowGQX	DP=16;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:11:16:27.08:60:27
chr1	162040114	.	G	.	.	PASS	END=162040115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	162040116	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	162040117	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr1	162040118	.	G	.	.	PASS	END=162040120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	162040121	.	C	.	.	PASS	END=162040123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chr1	162124144	.	A	.	.	PASS	END=162124146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	162124147	.	G	.	.	PASS	END=162124162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	162124163	.	C	.	.	PASS	END=162124216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	162124217	.	C	.	.	PASS	END=162124291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	162124292	.	G	.	.	PASS	END=162124296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	162124297	.	G	.	.	PASS	END=162124315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	162124316	.	C	.	.	PASS	END=162124317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	162257083	.	G	.	.	PASS	END=162257122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	162257123	.	C	.	.	PASS	END=162257165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:88:60
chr1	162257166	.	G	.	.	PASS	END=162257200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	162257201	.	A	.	.	PASS	END=162257240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	162257241	.	A	.	.	PASS	END=162257277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	162270372	.	T	.	.	PASS	END=162270389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	162270390	.	A	.	.	PASS	END=162270516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	162270517	.	C	.	.	PASS	END=162270528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	162270529	.	T	.	.	PASS	END=162270540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	162270541	.	T	.	.	PASS	END=162270547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	162302756	.	A	.	.	PASS	END=162302809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	162302810	.	C	.	.	PASS	END=162302848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	162302849	.	C	.	.	PASS	END=162302922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	162302923	.	G	.	.	PASS	END=162302966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	162312275	.	G	.	.	LowGQX	END=162312433	GT	./.
chr1	162313574	.	T	.	.	PASS	END=162313577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	162313578	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:60:60
chr1	162313579	.	C	.	.	PASS	END=162313590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	162313591	.	C	.	.	PASS	END=162313596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:90:60
chr1	162313597	.	T	C	1814.21	PASS	DP=58;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=2.8408;MQ=60;MQ0=0;QD=31.28;SB=-411.96	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,58:58:99:1847,141,0:60:99:1.000
chr1	162313598	.	C	.	.	PASS	END=162313618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	162313619	.	T	.	.	PASS	END=162313663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	162313664	.	T	.	.	PASS	END=162313689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	162313690	.	G	.	.	PASS	END=162313734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	162313735	.	C	T	1146.98	PASS	BaseQRankSum=1.302;DP=112;Dels=0.00;FS=2.521;HRun=0;HaplotypeScore=7.7863;MQ=60;MQ0=0;MQRankSum=1.922;QD=10.24;ReadPosRankSum=0.027;SB=-745.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:58,53:112:99:1177,0,1483:60:99:0.477
chr1	162313736	.	G	.	.	PASS	END=162313755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	162313756	.	A	.	.	PASS	END=162313791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	162313792	.	T	.	.	PASS	END=162313812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	162313813	.	C	.	.	PASS	END=162313816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	162313817	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:87:60
chr1	162324926	.	T	.	.	PASS	END=162324945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	162324946	.	C	.	.	PASS	END=162324961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	162324962	.	C	.	.	PASS	END=162324993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	162324994	.	G	.	.	PASS	END=162325015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	162325016	.	C	.	.	PASS	END=162325069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	162325070	.	T	.	.	PASS	END=162325114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	162325115	.	A	.	.	PASS	END=162325145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	162325146	.	A	.	.	PASS	END=162325159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	162325160	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:67:60
chr1	162325161	.	C	.	.	PASS	END=162325162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	162325163	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:60:60
chr1	162325164	.	C	.	.	PASS	END=162325167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	162325168	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr1	162325169	.	T	.	.	PASS	END=162325181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	162325182	.	T	.	.	PASS	END=162325185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	162325186	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:50:60
chr1	162325187	.	C	.	.	PASS	END=162325194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	162326699	.	T	.	.	PASS	END=162326716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	162326717	.	C	.	.	PASS	END=162326734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	162326735	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:63:60
chr1	162326736	.	T	.	.	PASS	END=162326780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:77:60
chr1	162326781	.	C	.	.	PASS	END=162326853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:85:60
chr1	162326854	.	T	.	.	PASS	END=162326894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	162326895	.	A	.	.	PASS	END=162326912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	162326913	.	T	.	.	PASS	END=162326928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	162326929	.	T	.	.	PASS	END=162326944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	162326945	.	C	.	.	PASS	END=162326957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	162326958	.	C	.	.	PASS	END=162326966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	162326967	.	C	.	.	PASS	END=162326970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	162326971	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	162326972	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	162326973	.	C	.	.	LowGQX	END=162326988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	162326989	.	T	.	.	LowGQX	END=162326993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	162326994	.	A	.	.	LowGQX	END=162326997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	162326998	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:60
chr1	162326999	.	C	.	.	LowGQX	END=162327000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	162330602	.	T	.	.	LowGQX	END=162330714	GT	./.
chr1	162335139	.	C	.	.	PASS	END=162335155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	162335156	.	T	.	.	PASS	END=162335182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	162335183	.	C	.	.	PASS	END=162335237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	162335238	.	G	.	.	PASS	END=162335298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	162335299	.	A	.	.	PASS	END=162335335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	162335336	.	T	.	.	PASS	END=162335360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	162335361	.	T	.	.	PASS	END=162335383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	162335384	.	T	.	.	PASS	END=162335392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	162335393	.	T	.	.	PASS	END=162335410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	162336791	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:93:60
chr1	162336792	.	A	.	.	PASS	END=162336793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:60
chr1	162336794	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:81:60
chr1	162336795	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:60:60
chr1	162336796	.	A	.	84.14	PASS	DP=33;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:26:33:54.15:60:54
chr1	162336797	.	C	.	.	PASS	END=162336805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	162336806	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:53:60
chr1	162336807	.	C	.	.	PASS	END=162336825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr1	162336826	.	C	.	.	PASS	END=162336844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:89:60
chr1	162336845	.	G	.	.	PASS	END=162336868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	162336869	.	T	.	.	PASS	END=162336897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	162336898	.	C	.	.	PASS	END=162336914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	162336915	.	C	.	.	PASS	END=162336945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	162336946	.	C	.	.	PASS	END=162336987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	162336988	.	C	.	.	PASS	END=162337137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr1	162337138	.	T	.	.	PASS	END=162337155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	162337156	.	G	.	.	PASS	END=162337205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	162337206	.	C	.	.	PASS	END=162337222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	162337223	.	T	.	.	PASS	END=162337254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	162337255	.	T	.	.	PASS	END=162337263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	162337264	.	A	.	.	PASS	END=162337299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	162337300	.	G	.	.	PASS	END=162337308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	162343836	.	C	.	.	LowGQX	END=162344011	GT	./.
chr1	162344012	.	C	.	.	LowGQX	END=162344101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	162344102	.	C	T	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	162344103	.	C	.	.	LowGQX	END=162344221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	162344222	.	C	.	.	LowGQX	END=162344408	GT	./.
chr1	162345078	.	A	.	.	LowGQX	END=162345195	GT	./.
chr1	162346476	.	A	.	.	LowGQX	END=162346558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	162346559	.	T	.	.	LowGQX	END=162346582	GT	./.
chr1	162348703	.	T	.	.	LowGQX	END=162348821	GT	./.
chr1	162351670	.	T	.	.	LowGQX	END=162352008	GT	./.
chr1	162352971	.	G	.	.	LowGQX	END=162353033	GT	./.
chr1	162353034	.	C	.	.	LowGQX	END=162353115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	162353116	.	A	.	.	LowGQX	.	GT	./.
chr1	162353117	.	T	.	.	LowGQX	END=162353146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	162353147	.	A	.	.	LowGQX	END=162353473	GT	./.
chr1	162367038	.	T	.	.	LowGQX	END=162367059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162367060	.	A	.	.	LowGQX	.	GT	./.
chr1	162367061	.	G	.	.	LowGQX	END=162367085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162367086	.	A	.	.	LowGQX	END=162367087	GT	./.
chr1	162367088	.	A	.	.	LowGQX	END=162367090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162367091	.	A	.	.	LowGQX	.	GT	./.
chr1	162367092	.	T	.	.	LowGQX	END=162367094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162367095	.	C	.	.	LowGQX	.	GT	./.
chr1	162367096	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162367097	.	G	.	.	LowGQX	.	GT	./.
chr1	162367098	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162367099	.	T	.	.	LowGQX	.	GT	./.
chr1	162367100	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162367101	.	C	.	.	LowGQX	.	GT	./.
chr1	162367102	.	T	.	.	LowGQX	END=162367114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162367115	.	G	.	.	LowGQX	.	GT	./.
chr1	162367116	.	A	.	.	LowGQX	END=162367121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162367122	.	A	.	.	LowGQX	END=162367137	GT	./.
chr1	162368711	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162368712	.	C	.	.	LowGQX	.	GT	./.
chr1	162368713	.	C	.	.	LowGQX	END=162368714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162368715	.	C	.	.	LowGQX	.	GT	./.
chr1	162368716	.	A	.	.	LowGQX	END=162368719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162368720	.	G	.	.	LowGQX	.	GT	./.
chr1	162368721	.	T	.	.	LowGQX	END=162368724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162368725	.	C	.	.	LowGQX	END=162368726	GT	./.
chr1	162368727	.	A	.	.	LowGQX	END=162368736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162368737	.	C	.	.	LowGQX	.	GT	./.
chr1	162368738	.	A	.	.	LowGQX	END=162368746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162368747	.	C	.	.	LowGQX	END=162368789	GT	./.
chr1	162368790	.	G	.	.	LowGQX	END=162368792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162368793	.	C	.	.	LowGQX	.	GT	./.
chr1	162368794	.	C	.	.	LowGQX	END=162368795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162368796	.	C	.	.	LowGQX	.	GT	./.
chr1	162368797	.	C	.	.	LowGQX	END=162368806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162368807	.	T	.	.	LowGQX	END=162368809	GT	./.
chr1	162368810	.	G	.	.	LowGQX	END=162368812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162368813	.	T	.	.	LowGQX	.	GT	./.
chr1	162368814	.	T	.	.	LowGQX	END=162368828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162368829	.	T	.	.	LowGQX	.	GT	./.
chr1	162368830	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162368831	.	A	.	.	LowGQX	.	GT	./.
chr1	162368832	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162368833	.	T	.	.	LowGQX	.	GT	./.
chr1	162368834	.	T	.	.	LowGQX	END=162368842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162368843	.	C	.	.	LowGQX	.	GT	./.
chr1	162368844	.	T	.	.	LowGQX	END=162368859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162368860	.	T	.	.	LowGQX	.	GT	./.
chr1	162368861	.	G	.	.	LowGQX	END=162368866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162368867	.	C	.	.	LowGQX	.	GT	./.
chr1	162368868	.	C	.	.	LowGQX	END=162368875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162368876	.	G	.	.	LowGQX	.	GT	./.
chr1	162368877	.	T	.	.	LowGQX	END=162368879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162372511	.	C	.	.	LowGQX	END=162372512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162372513	.	T	.	.	LowGQX	END=162372514	GT	./.
chr1	162372515	.	C	.	.	LowGQX	END=162372525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162372526	.	T	.	.	LowGQX	.	GT	./.
chr1	162372527	.	A	.	.	LowGQX	END=162372537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162372538	.	G	.	.	LowGQX	.	GT	./.
chr1	162372539	.	T	.	.	LowGQX	END=162372554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162372555	.	C	.	.	LowGQX	.	GT	./.
chr1	162372556	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162372557	.	C	.	.	LowGQX	.	GT	./.
chr1	162372558	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162372559	.	G	.	.	LowGQX	.	GT	./.
chr1	162372560	.	A	.	.	LowGQX	END=162372579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162372580	.	A	.	.	LowGQX	END=162372610	GT	./.
chr1	162381671	.	A	.	.	LowGQX	END=162381808	GT	./.
chr1	162467014	.	C	.	.	LowGQX	END=162467030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162467031	.	T	.	.	LowGQX	.	GT	./.
chr1	162467032	.	A	.	.	LowGQX	END=162467040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162467041	.	A	.	.	LowGQX	.	GT	./.
chr1	162467042	.	T	.	.	LowGQX	END=162467043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162467044	.	T	.	.	LowGQX	END=162467113	GT	./.
chr1	162467789	.	C	.	.	LowGQX	END=162468060	GT	./.
chr1	162469743	.	A	.	.	LowGQX	END=162470039	GT	./.
chr1	162470701	.	A	.	.	LowGQX	END=162470765	GT	./.
chr1	162470766	.	G	.	.	LowGQX	END=162470896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162473542	.	A	.	.	LowGQX	END=162473641	GT	./.
chr1	162482279	.	T	.	.	LowGQX	END=162482378	GT	./.
chr1	162482513	.	A	.	.	LowGQX	END=162482615	GT	./.
chr1	162482829	.	G	.	.	LowGQX	END=162482928	GT	./.
chr1	162487887	.	A	.	.	LowGQX	END=162487941	GT	./.
chr1	162487942	.	T	.	.	LowGQX	END=162487986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162492192	.	A	.	.	LowGQX	END=162492301	GT	./.
chr1	162492302	.	G	.	.	LowGQX	END=162492342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	162535857	.	T	.	.	LowGQX	END=162536140	GT	./.
chr1	162546565	.	A	.	.	LowGQX	END=162546773	GT	./.
chr1	162549216	.	A	.	.	LowGQX	END=162549395	GT	./.
chr1	162551075	.	A	.	.	LowGQX	END=162551251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162557263	.	A	.	.	LowGQX	END=162557460	GT	./.
chr1	162558441	.	A	.	.	LowGQX	END=162558625	GT	./.
chr1	162560111	.	A	.	.	LowGQX	END=162560303	GT	./.
chr1	162562497	.	T	.	.	LowGQX	END=162562596	GT	./.
chr1	162567566	.	T	.	.	LowGQX	END=162567665	GT	./.
chr1	162569058	.	T	.	.	LowGQX	END=162569157	GT	./.
chr1	162688803	.	T	.	.	PASS	END=162688812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	162688813	.	T	.	.	PASS	END=162688832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:90:60
chr1	162688833	.	G	.	.	PASS	END=162688883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	162688884	.	C	.	.	PASS	END=162688955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	162688956	.	C	.	.	PASS	END=162688972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	162688973	.	A	.	.	PASS	END=162688986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	162722824	.	G	.	.	PASS	END=162722845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	162722846	.	C	G	2189.97	PASS	BaseQRankSum=1.510;DP=78;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=0.489;QD=28.08;ReadPosRankSum=1.643;SB=-1203.83	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,77:78:99:2223,166,0:60:99:0.987
chr1	162722847	.	C	.	.	PASS	END=162722883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	162722884	.	G	.	.	PASS	END=162722965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	162722966	.	C	.	.	PASS	END=162723020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	162723021	.	T	.	.	PASS	END=162723034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	162723035	.	T	.	.	PASS	END=162723038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	162724363	.	G	.	.	PASS	END=162724382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	162724383	.	C	.	.	PASS	END=162724388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	162724389	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:58:60
chr1	162724390	.	T	.	.	PASS	END=162724406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	162724407	.	T	.	.	PASS	END=162724432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	162724433	.	G	.	.	PASS	END=162724543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	162724544	.	C	.	.	PASS	END=162724555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	162724556	.	C	.	.	PASS	END=162724594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	162724595	.	A	.	.	PASS	END=162724605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	162724606	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:51:60
chr1	162724607	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:90:60
chr1	162724608	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:49:60
chr1	162724609	.	T	.	.	PASS	END=162724616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	162724617	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:72:60
chr1	162724618	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:41:17:60
chr1	162724619	.	T	.	.	PASS	END=162724641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	162724642	.	A	.	.	PASS	END=162724674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	162724675	.	T	.	.	PASS	END=162724679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	162724680	.	A	.	.	PASS	END=162724696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	162724895	.	G	.	.	PASS	END=162724903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	162724904	.	A	.	.	PASS	END=162724973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	162724974	.	A	.	.	PASS	END=162725052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	162725053	.	T	.	.	PASS	END=162725065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	162725066	.	G	.	.	PASS	END=162725080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	162725081	.	T	.	.	PASS	END=162725095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	162725096	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:72:60
chr1	162725097	.	G	.	.	PASS	END=162725123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	162725124	.	T	.	.	PASS	END=162725144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	162725403	.	A	.	.	PASS	END=162725429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	162725430	.	C	.	.	PASS	END=162725542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:97:60
chr1	162725543	.	G	.	.	PASS	END=162725561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	162725562	.	A	.	.	PASS	END=162725597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	162725598	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:39:60
chr1	162725599	.	A	.	.	PASS	END=162725610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	162729535	.	G	.	.	LowGQX	END=162729538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	162729539	.	A	.	42.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.03:60:12
chr1	162729540	.	C	.	.	LowGQX	END=162729541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	162729542	.	C	.	.	LowGQX	END=162729561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	162729562	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	162729563	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	162729564	.	C	.	.	LowGQX	END=162729569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	162729570	.	C	.	.	LowGQX	END=162729576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	162729577	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:1:60
chr1	162729578	.	C	.	.	LowGQX	END=162729584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	162729585	.	G	.	.	PASS	END=162729602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	162729603	.	G	.	.	PASS	END=162729615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	162729616	.	T	.	.	PASS	END=162729619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	162729620	.	G	.	.	PASS	END=162729635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	162729636	.	A	.	.	PASS	END=162729642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	162729643	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:30:60
chr1	162729644	.	C	.	.	PASS	END=162729646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	162729647	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:60
chr1	162729648	.	C	.	.	PASS	END=162729667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	162729668	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:48:21:60
chr1	162729669	.	C	.	.	PASS	END=162729671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	162729672	.	G	.	.	PASS	END=162729707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:89:60
chr1	162729708	.	C	.	.	PASS	END=162729800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	162729801	.	T	.	.	PASS	END=162729820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	162730950	.	A	.	.	PASS	END=162730954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	162730955	.	C	.	.	PASS	END=162730969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	162730970	.	C	.	.	PASS	END=162731009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	162731010	.	A	.	.	PASS	END=162731065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	162731066	.	C	.	.	PASS	END=162731115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	162731116	.	T	.	.	PASS	END=162731153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	162731154	.	C	.	.	PASS	END=162731184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	162731185	.	A	.	.	PASS	END=162731222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	162731223	.	A	.	.	PASS	END=162731241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	162731242	.	C	.	.	PASS	END=162731258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr1	162731259	.	T	.	.	PASS	END=162731272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	162731273	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	162731274	.	G	.	.	PASS	END=162731277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	162731278	.	G	.	.	PASS	END=162731283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	162731284	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:45:60
chr1	162731285	.	G	.	.	PASS	END=162731295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	162735740	.	A	.	.	PASS	END=162735767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	162735768	.	G	.	.	PASS	END=162735862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	162735863	.	A	.	.	PASS	END=162735904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	162736968	.	T	.	.	PASS	END=162736973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	162736974	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:62:60
chr1	162736975	.	C	.	.	PASS	END=162736999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	162737000	.	C	.	.	PASS	END=162737018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	162737019	.	A	.	.	PASS	END=162737108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	162737109	.	T	.	.	PASS	END=162737150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	162737151	.	T	.	.	PASS	END=162737165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	162737166	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:87:60
chr1	162737167	.	G	.	.	PASS	END=162737180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	162737181	.	A	.	.	PASS	END=162737183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	162737184	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:45:60
chr1	162737185	.	T	.	.	PASS	END=162737187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	162737188	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:1:60
chr1	162737189	.	C	.	.	PASS	END=162737199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	162737200	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:42:60
chr1	162740041	.	T	.	.	PASS	END=162740061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	162740062	.	C	.	.	PASS	END=162740106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	162740107	.	C	.	.	PASS	END=162740173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	162740174	.	C	.	.	PASS	END=162740248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	162740249	.	C	.	.	PASS	END=162740258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	162740259	.	G	.	.	PASS	END=162740307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	162740308	.	G	.	.	PASS	END=162740320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	162740321	.	G	.	.	PASS	END=162740326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	162740327	.	T	C	1209.23	PASS	DP=39;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=31.01;SB=-246.05	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,38:39:96.30:1242,96,0:60:96:1.000
chr1	162740328	.	G	.	.	PASS	END=162740340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr1	162740341	.	C	.	.	PASS	END=162740366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:69:60
chr1	162740367	.	C	.	.	PASS	END=162740377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	162740378	.	C	.	.	PASS	END=162740384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	162740385	.	A	.	.	PASS	END=162740414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	162740415	.	C	.	.	PASS	END=162740421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	162740422	.	A	.	.	LowGQX	END=162740427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	162740428	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:60
chr1	162740429	.	A	.	.	LowGQX	END=162740431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	162740432	.	C	.	.	LowGQX	END=162740446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	162740447	.	G	.	.	LowGQX	END=162740448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	162740449	.	C	.	.	LowGQX	END=162740456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	162740457	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	162740458	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	162740459	.	T	.	.	LowGQX	END=162740466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	162741763	.	A	.	.	PASS	END=162741772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:60
chr1	162741773	.	A	.	.	PASS	END=162741774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	162741775	.	A	.	.	PASS	END=162741785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	162741786	.	T	.	.	PASS	END=162741787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	162741788	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	162741789	.	G	.	.	PASS	END=162741798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	162741799	.	C	.	.	PASS	END=162741814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	162741815	.	C	.	.	PASS	END=162741816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	162741817	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:21:60
chr1	162741818	.	C	.	.	PASS	END=162741833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	162741834	.	C	.	.	PASS	END=162741837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	162741838	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:39:60
chr1	162741839	.	C	.	.	PASS	END=162741849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	162741850	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:99:60
chr1	162741851	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:58:60
chr1	162741852	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:99:60
chr1	162741853	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:69:60
chr1	162741854	.	T	.	.	PASS	END=162741877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	162741878	.	G	.	.	PASS	END=162741913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	162741914	.	C	.	.	PASS	END=162741957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	162741958	.	G	.	.	PASS	END=162742036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	162742037	.	G	.	.	PASS	END=162742065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	162742066	.	C	.	.	PASS	END=162742090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	162743208	.	A	.	.	PASS	END=162743238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	162743239	.	A	.	.	PASS	END=162743312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:86:60
chr1	162743313	.	C	.	.	PASS	END=162743345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	162743346	.	G	.	.	PASS	END=162743360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	162743361	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:54:60
chr1	162743362	.	G	.	.	PASS	END=162743370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	162743371	.	C	.	.	PASS	END=162743394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	162743395	.	T	.	.	PASS	END=162743417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	162743418	.	G	T	836.46	PASS	DP=26;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=32.17;SB=-232.71	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,26:26:66.22:869,66,0:60:66:1.000
chr1	162743419	.	G	.	.	PASS	END=162743437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	162745391	.	G	.	.	PASS	END=162745407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	162745408	.	C	.	.	PASS	END=162745425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	162745426	.	T	.	.	PASS	END=162745480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	162745481	.	C	.	.	PASS	END=162745559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	162745560	.	A	.	.	PASS	END=162745613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	162745614	.	A	.	.	PASS	END=162745627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	162745628	.	T	.	.	PASS	END=162745651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	162745652	.	C	.	.	PASS	END=162745661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	162745662	.	C	.	.	PASS	END=162745666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	162745667	.	G	.	.	PASS	END=162745669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	162745670	.	C	.	.	PASS	END=162745679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	162745680	.	A	.	.	PASS	END=162745684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	162745875	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:66:60
chr1	162745876	.	A	.	.	PASS	END=162745896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	162745897	.	A	.	.	PASS	END=162745932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	162745933	.	A	.	.	PASS	END=162745945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	162745946	.	T	.	.	PASS	END=162745997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	162745998	.	T	.	.	PASS	END=162746087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	162746088	.	T	.	.	PASS	END=162746111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	162746112	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:71:63:60
chr1	162746113	.	C	.	.	PASS	END=162746153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:93:60
chr1	162746154	.	C	.	.	PASS	END=162746156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	162746157	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:71:60
chr1	162746158	.	C	.	.	PASS	END=162746181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	162746182	.	G	.	.	PASS	END=162746185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	162746186	.	T	.	.	PASS	END=162746195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	162746196	.	C	.	.	PASS	END=162746208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	162746209	.	T	.	.	PASS	END=162746211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	162748319	.	T	.	.	PASS	END=162748334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	162748335	.	A	.	.	PASS	END=162748376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	162748377	.	T	.	.	PASS	END=162748396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	162748397	.	T	.	.	PASS	END=162748412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	162748413	.	C	.	.	PASS	END=162748526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	162748527	.	C	.	.	PASS	END=162748550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	162748551	.	C	.	.	PASS	END=162748562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	162748563	.	G	.	.	PASS	END=162748570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	162749851	.	A	.	.	PASS	END=162749856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	162749857	.	C	.	.	PASS	END=162749870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	162749871	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:51:60
chr1	162749872	.	T	.	.	PASS	END=162749881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	162749882	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:42:60
chr1	162749883	.	T	.	.	PASS	END=162749895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	162749896	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:38:60
chr1	162749897	.	C	.	.	PASS	END=162749905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	162749906	.	A	.	.	PASS	END=162749907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	162749908	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:45:60
chr1	162749909	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:84:60
chr1	162749910	.	C	.	.	PASS	END=162749911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:43:60
chr1	162749912	.	C	.	.	PASS	END=162749926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	162749927	.	G	.	.	PASS	END=162749937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:91:60
chr1	162749938	.	G	.	.	PASS	END=162749957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	162749958	.	C	.	.	PASS	END=162750067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	162750068	.	T	.	.	PASS	END=162750087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	162760559	.	G	.	.	LowGQX	END=162760657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162760658	.	G	.	.	LowGQX	.	GT	./.
chr1	162762447	.	A	.	.	LowGQX	END=162762668	GT	./.
chr1	162765383	.	A	.	.	LowGQX	END=162765391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	162765392	.	A	.	.	LowGQX	.	GT	./.
chr1	162765393	.	T	.	.	LowGQX	END=162765396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	162765397	.	T	.	.	LowGQX	.	GT	./.
chr1	162765398	.	C	.	.	LowGQX	END=162765399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	162765400	.	A	.	.	LowGQX	.	GT	./.
chr1	162765401	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:48
chr1	162765402	.	T	.	.	LowGQX	END=162765482	GT	./.
chr1	162766372	.	C	.	.	LowGQX	END=162766391	GT	./.
chr1	162766392	.	G	.	.	LowGQX	END=162766471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162767590	.	A	.	.	LowGQX;LowMQ	END=162767670	GT	./.
chr1	162767671	.	G	.	.	LowGQX	END=162767708	GT	./.
chr1	162768613	.	C	.	.	LowGQX	END=162768772	GT	./.
chr1	162769531	.	A	.	.	LowGQX	END=162769729	GT	./.
chr1	162773219	.	A	.	.	LowGQX	END=162773327	GT	./.
chr1	162774036	.	C	.	.	LowGQX	END=162774135	GT	./.
chr1	162775182	.	A	.	.	LowGQX	END=162775284	GT	./.
chr1	162782086	.	A	.	.	LowGQX	END=162782212	GT	./.
chr1	162822817	.	A	.	.	LowGQX	END=162822960	GT	./.
chr1	162824554	.	G	.	.	LowGQX	END=162824562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162824563	.	G	.	.	LowGQX	END=162824892	GT	./.
chr1	162824893	.	G	.	.	LowGQX	END=162824948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162824949	.	C	.	.	LowGQX	.	GT	./.
chr1	162824950	.	T	.	.	LowGQX	END=162824959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162824960	.	G	.	.	LowGQX	.	GT	./.
chr1	162824961	.	T	.	.	LowGQX	END=162824965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162824966	.	A	.	.	LowGQX	.	GT	./.
chr1	162824967	.	G	.	.	LowGQX	END=162824994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162824995	.	C	.	.	LowGQX	.	GT	./.
chr1	162824996	.	T	.	.	LowGQX	END=162824999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162825000	.	G	.	.	LowGQX	.	GT	./.
chr1	162825001	.	G	.	.	LowGQX	END=162825006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162825007	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	162825008	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	162825009	.	T	.	.	LowGQX	.	GT	./.
chr1	162825010	.	T	.	.	LowGQX	END=162825013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	162825014	.	G	.	.	LowGQX	.	GT	./.
chr1	162825015	.	A	.	.	LowGQX	END=162825045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162825046	.	G	.	.	LowGQX	.	GT	./.
chr1	162825047	.	C	.	.	LowGQX	END=162825068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162825069	.	T	.	.	LowGQX	.	GT	./.
chr1	162825070	.	C	.	.	LowGQX	END=162825087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162825088	.	G	.	.	LowGQX	END=162825089	GT	./.
chr1	162825090	.	G	.	.	LowGQX	END=162825092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162825093	.	G	.	.	LowGQX	.	GT	./.
chr1	162825094	.	G	.	.	LowGQX	END=162825114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162825115	.	T	.	.	LowGQX	END=162825116	GT	./.
chr1	162825117	.	C	.	.	LowGQX	END=162825122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162825123	.	T	.	.	LowGQX	.	GT	./.
chr1	162825124	.	C	.	.	LowGQX	END=162825139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162825140	.	T	.	.	LowGQX	.	GT	./.
chr1	162825141	.	G	.	.	LowGQX	END=162825149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	162825421	.	C	.	.	LowGQX	END=162825548	GT	./.
chr1	162829249	.	C	.	.	LowGQX	END=162829436	GT	./.
chr1	163038704	.	G	.	.	LowGQX	END=163038803	GT	./.
chr1	163039041	.	G	.	.	LowGQX	END=163039320	GT	./.
chr1	163042183	.	A	.	.	LowGQX	END=163042291	GT	./.
chr1	163042576	.	T	.	.	LowGQX	END=163042675	GT	./.
chr1	163043244	.	A	.	.	LowGQX	END=163043414	GT	./.
chr1	163044109	.	A	.	.	LowGQX	END=163044352	GT	./.
chr1	163044365	.	C	.	.	LowGQX	END=163044464	GT	./.
chr1	163117130	.	T	.	.	LowGQX	END=163117295	GT	./.
chr1	163122327	.	C	.	.	LowGQX	END=163122508	GT	./.
chr1	163131686	.	A	.	.	LowGQX	END=163131785	GT	./.
chr1	163138046	.	A	.	.	LowGQX	END=163138160	GT	./.
chr1	163142315	.	C	.	.	LowGQX	END=163142335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	163142336	.	A	.	.	LowGQX	END=163142414	GT	./.
chr1	163172554	.	T	.	.	LowGQX	END=163172653	GT	./.
chr1	163187300	.	T	.	.	LowGQX	END=163187324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	163187325	.	C	.	.	LowGQX	END=163187399	GT	./.
chr1	163295840	.	A	.	.	LowGQX	END=163295904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	163295905	.	A	.	.	LowGQX	.	GT	./.
chr1	163295906	.	T	.	.	LowGQX	END=163295916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	163295917	.	G	.	.	LowGQX	.	GT	./.
chr1	163295918	.	C	.	.	LowGQX	END=163295925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	163295926	.	A	.	.	LowGQX	.	GT	./.
chr1	163295927	.	A	.	.	LowGQX	END=163295939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	163295940	.	G	.	.	LowGQX	END=163295949	GT	./.
chr1	163295950	.	T	.	.	LowGQX	END=163295958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	163295959	.	C	.	.	LowGQX	.	GT	./.
chr1	163295960	.	C	.	.	LowGQX	END=163295963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	163295964	.	G	.	.	LowGQX	.	GT	./.
chr1	163295965	.	G	.	.	LowGQX	END=163295966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	163297266	.	T	.	.	LowGQX	END=163297356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	163297357	.	G	.	.	LowGQX	END=163297365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	163298007	.	A	.	.	LowGQX	END=163298106	GT	./.
chr1	163298617	.	T	.	.	LowGQX	END=163298716	GT	./.
chr1	163306489	.	C	.	.	LowGQX	END=163306640	GT	./.
chr1	163307797	.	A	.	.	LowGQX	END=163307896	GT	./.
chr1	163309169	.	A	.	.	LowGQX	END=163309269	GT	./.
chr1	163310082	.	T	.	.	LowGQX	END=163310235	GT	./.
chr1	163313521	.	A	.	.	LowGQX	END=163313700	GT	./.
chr1	163315466	.	A	.	.	LowGQX	END=163315610	GT	./.
chr1	163317551	.	A	.	.	LowGQX	END=163317730	GT	./.
chr1	163318683	.	C	.	.	LowGQX	END=163318872	GT	./.
chr1	163325123	.	A	.	.	LowGQX	END=163325165	GT	./.
chr1	163325166	.	C	.	.	LowGQX	END=163325200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	163325201	.	C	.	.	LowGQX	.	GT	./.
chr1	163325202	.	T	.	.	LowGQX	END=163325209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	163325210	.	A	.	.	LowGQX	.	GT	./.
chr1	163325211	.	T	.	.	LowGQX	END=163325217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	163325218	.	A	.	.	LowGQX	.	GT	./.
chr1	163325219	.	C	.	.	LowGQX	END=163325240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	163325241	.	G	.	.	LowGQX	.	GT	./.
chr1	163325242	.	T	.	.	LowGQX	END=163325252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	163325253	.	A	.	.	LowGQX	.	GT	./.
chr1	163325254	.	A	.	.	LowGQX	END=163325261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	164529047	.	G	.	.	LowGQX	END=164529160	GT	./.
chr1	164529161	.	G	.	.	LowGQX	END=164529204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	164529205	.	A	.	.	LowGQX	.	GT	./.
chr1	164529206	.	A	.	.	LowGQX	END=164529214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	164529215	.	C	.	.	LowGQX	.	GT	./.
chr1	164529216	.	A	.	.	LowGQX	END=164529242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	164529243	.	C	.	.	LowGQX	.	GT	./.
chr1	164529244	.	A	.	.	LowGQX	END=164529252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	164532462	.	T	.	.	LowGQX	END=164532508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	164532509	.	G	.	.	LowGQX	.	GT	./.
chr1	164532510	.	C	.	.	LowGQX	END=164532523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	164532524	.	T	.	.	LowGQX	.	GT	./.
chr1	164532525	.	T	.	.	LowGQX	END=164532561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	164559579	.	T	.	.	LowGQX	END=164559678	GT	./.
chr1	164761705	.	G	.	.	LowGQX	END=164761848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	164761849	.	A	.	.	LowGQX	END=164761977	GT	./.
chr1	164768934	.	A	.	.	LowGQX	END=164769083	GT	./.
chr1	164769084	.	G	.	.	LowGQX	END=164769128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	164776777	.	A	.	.	LowGQX	END=164776916	GT	./.
chr1	164781225	.	A	.	.	LowGQX	END=164781388	GT	./.
chr1	164789307	.	A	.	.	LowGQX	END=164789423	GT	./.
chr1	164790769	.	T	.	.	LowGQX	END=164790868	GT	./.
chr1	164815818	.	T	.	.	LowGQX	END=164815917	GT	./.
chr1	164818558	.	T	.	.	LowGQX	END=164818657	GT	./.
chr1	164853739	.	T	.	.	LowGQX	END=164853838	GT	./.
chr1	165173115	.	A	.	.	LowGQX	END=165173279	GT	./.
chr1	165175088	.	A	.	.	LowGQX	END=165175273	GT	./.
chr1	165177285	.	G	.	.	LowGQX	END=165177314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165177315	.	G	.	.	LowGQX	.	GT	./.
chr1	165177316	.	G	.	.	LowGQX	END=165177318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165177319	.	G	.	.	LowGQX	.	GT	./.
chr1	165177320	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165177321	.	T	.	.	LowGQX	.	GT	./.
chr1	165177322	.	C	.	.	LowGQX	END=165177346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165177347	.	T	.	.	LowGQX	.	GT	./.
chr1	165177348	.	G	.	.	LowGQX	END=165177384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165179925	.	A	.	.	LowGQX	END=165179931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165179932	.	T	.	.	LowGQX	.	GT	./.
chr1	165179933	.	T	.	.	LowGQX	END=165179956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165179957	.	C	.	.	LowGQX	END=165180024	GT	./.
chr1	165182876	.	A	.	.	LowGQX	END=165182880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	165182881	.	C	.	.	LowGQX	.	GT	./.
chr1	165182882	.	C	.	.	LowGQX	END=165182889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	165182890	.	C	.	.	LowGQX	END=165182891	GT	./.
chr1	165182892	.	T	.	.	LowGQX	END=165182894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	165182895	.	A	.	.	LowGQX	.	GT	./.
chr1	165182896	.	G	.	.	LowGQX	END=165182906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165182907	.	A	.	.	LowGQX	.	GT	./.
chr1	165182908	.	T	.	.	LowGQX	END=165182925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165182926	.	C	.	.	LowGQX	.	GT	./.
chr1	165182927	.	C	.	.	LowGQX	END=165182937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165182938	.	T	.	.	LowGQX	END=165183052	GT	./.
chr1	165218643	.	A	.	.	LowGQX	END=165218879	GT	./.
chr1	165322311	.	A	.	.	LowGQX	END=165322501	GT	./.
chr1	165324709	.	C	.	.	LowGQX	END=165324808	GT	./.
chr1	165370498	.	G	.	.	PASS	END=165370518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	165370519	.	G	.	.	PASS	END=165370542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	165370543	.	G	.	.	PASS	END=165370623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	165370624	.	A	.	.	PASS	END=165370656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	165370657	.	A	.	.	PASS	END=165370675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	165370676	.	C	.	.	PASS	END=165370677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	165376047	.	A	.	.	PASS	END=165376076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	165376077	.	T	.	.	PASS	END=165376087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	165376088	.	T	.	.	PASS	END=165376156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	165377460	.	T	.	.	PASS	END=165377475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	165377476	.	G	.	.	PASS	END=165377510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	165377511	.	T	.	.	PASS	END=165377551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	165377552	.	G	A	1375.99	PASS	BaseQRankSum=3.294;DP=113;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=8.5223;MQ=60;MQ0=0;MQRankSum=-0.709;QD=12.18;ReadPosRankSum=0.445;SB=-878.16	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:55,58:113:99:1406,0,1290:60:99:0.513
chr1	165377553	.	A	.	.	PASS	END=165377559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	165378793	.	A	.	.	PASS	END=165378820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:81:60
chr1	165378821	.	A	.	.	PASS	END=165378862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	165378863	.	A	.	.	PASS	END=165378905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	165378906	.	G	.	.	PASS	END=165378929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	165379937	.	A	.	.	PASS	END=165380070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	165380184	.	A	.	.	PASS	END=165380292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	165380293	.	A	.	.	PASS	END=165380323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	165380324	.	C	.	.	PASS	END=165380348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	165386276	.	A	.	.	PASS	END=165386292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	165386293	.	C	.	.	PASS	END=165386435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	165386436	.	C	.	.	PASS	END=165386443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	165386444	.	C	.	.	PASS	END=165386453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	165386454	.	T	.	.	PASS	END=165386459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	165389105	.	A	.	.	PASS	END=165389216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	165389217	.	T	.	.	PASS	END=165389239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	165389240	.	G	.	.	PASS	END=165389252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	165389253	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:67:99:60
chr1	165397954	.	A	.	.	PASS	END=165398035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	165398036	.	T	.	.	PASS	END=165398077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	165398078	.	C	.	.	PASS	END=165398200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	165398201	.	A	.	.	PASS	END=165398205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	165406363	.	T	.	.	LowGQX	END=165406462	GT	./.
chr1	165414057	.	A	.	.	PASS	END=165414080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	165414081	.	C	.	.	PASS	END=165414156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	165513532	.	C	.	.	LowGQX	END=165513883	GT	./.
chr1	165513884	.	C	.	.	LowGQX	END=165514053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165514054	.	C	.	.	LowGQX	END=165514103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	165514104	.	T	.	.	LowGQX	END=165514157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	165532740	.	A	.	.	LowGQX	END=165532828	GT	./.
chr1	165532829	.	T	.	.	LowGQX	END=165532849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165532850	.	A	.	.	LowGQX	.	GT	./.
chr1	165532851	.	C	.	.	LowGQX	END=165532861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165532862	.	T	.	.	LowGQX	.	GT	./.
chr1	165532863	.	G	.	.	LowGQX	END=165533004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165533005	.	C	.	5.79	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr1	165533006	.	G	.	.	LowGQX	END=165533019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	165533020	.	A	.	.	LowGQX	.	GT	./.
chr1	165533021	.	C	.	.	LowGQX	END=165533046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165533047	.	C	.	.	LowGQX	.	GT	./.
chr1	165533048	.	C	.	.	LowGQX	END=165533063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165601444	.	T	.	.	LowGQX	END=165601543	GT	./.
chr1	165619031	.	A	.	.	PASS	END=165619039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	165619040	.	G	.	.	PASS	END=165619041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	165619042	.	G	.	.	PASS	END=165619067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	165619068	.	T	.	.	PASS	END=165619085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:84:60
chr1	165619086	.	T	.	.	PASS	END=165619190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	165619191	.	A	.	.	PASS	END=165619207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	165619208	.	G	.	.	PASS	END=165619235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	165619236	.	T	.	.	PASS	END=165619252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	165620200	.	C	.	.	PASS	END=165620224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	165620225	.	G	.	.	PASS	END=165620250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	165620251	.	T	.	.	PASS	END=165620312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	165620313	.	C	.	.	PASS	END=165620345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	165620346	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:65:60
chr1	165620347	.	A	.	.	PASS	END=165620369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	165620370	.	T	.	.	PASS	END=165620375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:60:60
chr1	165621164	.	A	.	.	PASS	END=165621166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	165621167	.	C	.	.	PASS	END=165621181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	165621182	.	C	.	.	PASS	END=165621211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:93:60
chr1	165621212	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:36:60
chr1	165621213	.	A	.	.	PASS	END=165621249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	165621250	.	C	.	.	PASS	END=165621313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	165621314	.	C	.	.	PASS	END=165621321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	165621322	.	T	.	.	PASS	END=165621323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	165623462	.	A	.	.	PASS	END=165623504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	165623505	.	T	.	.	PASS	END=165623569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:97:60
chr1	165623570	.	T	.	.	PASS	END=165623584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	165623585	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:63:60
chr1	165623586	.	G	.	.	PASS	END=165623599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	165623600	.	T	.	.	PASS	END=165623639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	165624554	.	A	.	.	PASS	END=165624571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	165624572	.	T	.	.	PASS	END=165624580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	165624581	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:39:60
chr1	165624582	.	T	.	.	PASS	END=165624605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	165624606	.	A	.	.	PASS	END=165624610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:60
chr1	165624611	.	G	.	.	PASS	END=165624621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	165624622	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:63:60
chr1	165624623	.	G	.	.	PASS	END=165624645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	165624646	.	C	.	.	PASS	END=165624695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	165624696	.	T	.	.	PASS	END=165624792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:96:60
chr1	165630650	.	C	.	.	LowGQX	END=165630672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165630673	.	C	.	.	LowGQX	.	GT	./.
chr1	165630674	.	A	.	.	LowGQX	END=165630677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165630678	.	G	.	.	LowGQX	.	GT	./.
chr1	165630679	.	T	.	.	LowGQX	END=165630686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165630687	.	C	.	.	LowGQX	.	GT	./.
chr1	165630688	.	C	.	.	LowGQX	END=165630697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165630698	.	A	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	165630699	.	C	.	.	LowGQX	END=165630704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165630705	.	G	.	.	LowGQX	.	GT	./.
chr1	165630706	.	A	.	.	LowGQX	END=165630715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165630716	.	G	.	.	LowGQX	.	GT	./.
chr1	165630717	.	T	.	.	LowGQX	END=165630721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165630722	.	G	.	.	LowGQX	END=165630723	GT	./.
chr1	165630724	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165630725	.	C	.	.	LowGQX	.	GT	./.
chr1	165630726	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165630727	.	C	.	.	LowGQX	.	GT	./.
chr1	165630728	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165630729	.	C	.	.	LowGQX	.	GT	./.
chr1	165630730	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165630731	.	T	.	.	LowGQX	.	GT	./.
chr1	165630732	.	A	.	.	LowGQX	END=165630737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165630738	.	C	.	.	LowGQX	.	GT	./.
chr1	165630739	.	A	.	.	LowGQX	END=165630740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165630741	.	T	.	.	LowGQX	.	GT	./.
chr1	165630742	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165630743	.	A	.	.	LowGQX	.	GT	./.
chr1	165630744	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165630745	.	A	.	.	LowGQX	.	GT	./.
chr1	165630746	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165630747	.	T	.	.	LowGQX	.	GT	./.
chr1	165630748	.	A	.	.	LowGQX	END=165630749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165632285	.	T	.	.	LowGQX	END=165632384	GT	./.
chr1	165634253	.	A	.	.	LowGQX	END=165634369	GT	./.
chr1	165636544	.	A	.	.	LowGQX	END=165636689	GT	./.
chr1	165638122	.	T	.	.	LowGQX	END=165638217	GT	./.
chr1	165638218	.	A	.	.	LowGQX	END=165638252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165638497	.	A	.	.	LowGQX	END=165638506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165638507	.	T	.	.	LowGQX	.	GT	./.
chr1	165638508	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165638509	.	G	.	.	LowGQX	.	GT	./.
chr1	165638510	.	C	.	.	LowGQX	END=165638517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165638518	.	A	.	.	LowGQX	.	GT	./.
chr1	165638519	.	C	.	.	LowGQX	END=165638627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165638628	.	C	.	.	LowGQX	END=165638689	GT	./.
chr1	165648677	.	A	.	.	LowGQX	END=165648821	GT	./.
chr1	165649712	.	T	.	.	LowGQX	END=165649776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	165649777	.	G	.	.	LowGQX	END=165649799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	165649800	.	G	T	9.30	LowGQX	BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=3.10;ReadPosRankSum=0.736;SB=-30.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr1	165649801	.	C	.	.	LowGQX	END=165649829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165649830	.	C	.	.	LowGQX	.	GT	./.
chr1	165649831	.	C	.	.	LowGQX	END=165649850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165649851	.	C	.	.	LowGQX	.	GT	./.
chr1	165649852	.	T	.	.	LowGQX	END=165649859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165649860	.	T	.	.	LowGQX	END=165649922	GT	./.
chr1	165651342	.	A	.	.	LowGQX	END=165651343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165651344	.	C	.	.	LowGQX	END=165651345	GT	./.
chr1	165651346	.	C	.	.	LowGQX	END=165651362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165651363	.	C	.	.	LowGQX	.	GT	./.
chr1	165651364	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165651365	.	A	.	.	LowGQX	.	GT	./.
chr1	165651366	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165651367	.	T	.	.	LowGQX	.	GT	./.
chr1	165651368	.	T	.	.	LowGQX	END=165651373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165651374	.	A	.	.	LowGQX	.	GT	./.
chr1	165651375	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165651376	.	G	.	.	LowGQX	END=165651378	GT	./.
chr1	165651379	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165651380	.	T	.	.	LowGQX	.	GT	./.
chr1	165651381	.	C	.	.	LowGQX	END=165651382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165651383	.	G	.	.	LowGQX	.	GT	./.
chr1	165651384	.	A	.	.	LowGQX	END=165651385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165651386	.	A	.	.	LowGQX	.	GT	./.
chr1	165651387	.	G	.	.	LowGQX	END=165651392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165651393	.	G	.	.	LowGQX	END=165651394	GT	./.
chr1	165651395	.	T	.	.	LowGQX	END=165651396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165651397	.	C	.	.	LowGQX	END=165651398	GT	./.
chr1	165651399	.	T	.	.	LowGQX	END=165651401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165651402	.	T	.	.	LowGQX	END=165651480	GT	./.
chr1	165652216	.	A	.	.	LowGQX	END=165652349	GT	./.
chr1	165664487	.	A	.	.	LowGQX	END=165664636	GT	./.
chr1	165667613	.	A	.	.	LowGQX	END=165667616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165667617	.	G	.	.	LowGQX	.	GT	./.
chr1	165667618	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165667619	.	T	.	.	LowGQX	END=165667812	GT	./.
chr1	165693527	.	A	.	.	PASS	END=165693538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	165693539	.	T	C	965.48	PASS	BaseQRankSum=0.638;DP=72;Dels=0.00;FS=6.226;HRun=1;HaplotypeScore=2.9462;MQ=60;MQ0=0;MQRankSum=-0.063;QD=13.41;ReadPosRankSum=0.443;SB=-110.19	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:36,35:72:99:995,0,1081:60:99:0.493
chr1	165693540	.	C	.	.	PASS	END=165693574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	165693575	.	C	.	.	PASS	END=165693581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	165693582	.	C	.	.	PASS	END=165693592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	165693593	.	C	.	.	PASS	END=165693674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	165693675	.	T	.	.	PASS	END=165693862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	165693863	.	G	T	3711.85	PASS	BaseQRankSum=2.193;DP=262;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=14.2038;MQ=60;MQ0=0;MQRankSum=-0.242;QD=14.17;ReadPosRankSum=-2.227;SB=-1991.58	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:128,134:262:99:3712,0,3521:60:99:0.511
chr1	165693864	.	A	.	.	PASS	END=165694004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:249:99:60
chr1	165694005	.	A	.	.	PASS	END=165694123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:287:99:60
chr1	165694124	.	G	.	.	PASS	END=165694159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:309:99:60
chr1	165694160	.	A	.	.	PASS	END=165694207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:59
chr1	165694208	.	T	.	.	PASS	END=165694223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:59
chr1	165694223	.	TTCTCTCTCTCTCTC	TTCTCTCTC,T	10644.44	PASS	BaseQRankSum=1.794;DP=223;FS=1.779;HaplotypeScore=1321.9265;MQ=59;MQ0=0;MQRankSum=3.311;QD=47.73;ReadPosRankSum=2.688;SB=-3777.51	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/2:160,0,27:223:99:10644,4180,4054,3292,0,5769:59:99:0.144
chr1	165694224	.	T	.	.	LowGQX	DP=226;MQ=59;MQ0=0	GT:AD:DP:MQ	.:158:159:59
chr1	165694225	.	C	.	.	LowGQX	DP=226;MQ=59;MQ0=0	GT:AD:DP:MQ	.:157:159:59
chr1	165694226	.	T	.	.	LowGQX	DP=225;MQ=59;MQ0=0	GT:AD:DP:MQ	.:158:158:59
chr1	165694227	.	C	.	.	LowGQX	DP=224;MQ=59;MQ0=0	GT:AD:DP:MQ	.:154:157:59
chr1	165694228	.	T	.	.	LowGQX	DP=215;MQ=59;MQ0=0	GT:AD:DP:MQ	.:149:149:59
chr1	165694229	.	C	.	.	LowGQX	DP=215;MQ=59;MQ0=0	GT:AD:DP:MQ	.:144:149:59
chr1	165694230	.	T	.	.	LowGQX	DP=215;MQ=59;MQ0=0	GT:AD:DP:MQ	.:172:173:59
chr1	165694231	.	C	.	.	LowGQX	DP=216;MQ=59;MQ0=0	GT:AD:DP:MQ	.:168:174:59
chr1	165694232	.	T	.	.	LowGQX	END=165694237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	.:178:.:58
chr1	165694238	.	T	.	.	PASS	END=165694248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:58
chr1	165694249	.	C	.	.	PASS	END=165694256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:58
chr1	165694257	.	C	.	.	PASS	END=165694260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:58
chr1	165694261	.	C	A	19.11	LowGQX;LowQD;SB	BaseQRankSum=-0.928;DP=142;Dels=0.18;FS=21.156;HRun=0;HaplotypeScore=300.5711;MQ=58;MQ0=0;MQRankSum=1.059;QD=0.13;ReadPosRankSum=-0.691;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:103,13:117:49.05:49,0,2981:58:19:0.112
chr1	165694262	.	T	.	.	PASS	END=165694267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:58
chr1	165694268	.	T	.	.	PASS	END=165694280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:59
chr1	165694280	.	TATATAA	T	3339.70	PASS	BaseQRankSum=-3.574;DP=177;FS=13.214;HRun=0;HaplotypeScore=1849.1321;MQ=61;MQ0=0;MQRankSum=3.771;QD=18.87;ReadPosRankSum=-2.024;SB=-1580.74	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:120,49:177:99:3340,0,4276:61:99:0.290
chr1	165694281	.	A	.	348.97	PASS	DP=172;MQ=61;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:121:121:99:61:99
chr1	165694282	.	T	.	294.76	PASS	DP=160;MQ=62;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:109:109:99:62:99
chr1	165694283	.	A	.	297.82	PASS	DP=161;MQ=62;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:107:107:99:62:99
chr1	165694284	.	T	.	267.66	PASS	DP=156;MQ=62;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:102:102:99:62:99
chr1	165694285	.	A	.	270.77	PASS	DP=156;MQ=62;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:100:100:99:62:99
chr1	165694286	.	A	T	.	LowQD;SiteConflict;LowGQX	BaseQRankSum=-1.085;DP=157;Dels=0.36;FS=25.819;HRun=0;HaplotypeScore=336.0739;MQ=62;MQ0=0;MQRankSum=-0.304;QD=1.40;ReadPosRankSum=-0.894;SB=-0.01	GT:AD:DP:MQ	.:84,17:101:62
chr1	165694287	.	A	.	.	PASS	END=165694298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:62
chr1	165694299	.	A	.	.	PASS	END=165694390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:62
chr1	165694391	.	C	.	.	PASS	END=165694477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	165694478	.	A	.	.	PASS	END=165694630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:259:99:60
chr1	165694631	.	T	.	.	PASS	END=165694854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:309:99:60
chr1	165694855	.	A	.	.	PASS	END=165694896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:406:99:60
chr1	165694897	.	T	C	12518.73	PASS	BaseQRankSum=-0.469;DP=415;Dels=0.00;FS=3.771;HRun=1;HaplotypeScore=25.7670;MQ=60;MQ0=0;MQRankSum=-0.418;QD=30.17;ReadPosRankSum=0.628;SB=-5968.38	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,413:415:99:12519,966,0:60:99:0.998
chr1	165694898	.	G	.	.	PASS	END=165694917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:419:99:60
chr1	165694918	.	G	C	5219.42	PASS	BaseQRankSum=1.175;DP=429;Dels=0.00;FS=1.643;HRun=0;HaplotypeScore=35.0888;MQ=60;MQ0=0;MQRankSum=-1.962;QD=12.17;ReadPosRankSum=3.432;SB=-2447.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:228,200:429:99:5219,0,6386:60:99:0.467
chr1	165694919	.	T	.	.	PASS	END=165695020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:342:99:60
chr1	165695021	.	T	.	.	PASS	END=165695060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:275:99:60
chr1	165695061	.	T	.	.	PASS	END=165695130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr1	165695131	.	T	.	.	PASS	END=165695235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:316:99:60
chr1	165695236	.	C	.	.	PASS	END=165695283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:247:99:60
chr1	165695284	.	T	.	.	PASS	END=165695297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	165695298	.	T	.	.	PASS	END=165695478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	165695479	.	T	.	.	PASS	END=165695496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	165695497	.	A	.	.	PASS	END=165695537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr1	165695538	.	C	.	.	PASS	END=165695578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:316:99:60
chr1	165695579	.	C	T	4029.82	PASS	BaseQRankSum=3.003;DP=334;Dels=0.00;FS=2.468;HRun=3;HaplotypeScore=22.8707;MQ=60;MQ0=0;MQRankSum=0.095;QD=12.07;ReadPosRankSum=1.514;SB=-2100.06	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:164,170:334:99:4030,0,4041:60:99:0.509
chr1	165695580	.	T	.	.	PASS	END=165695644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:287:99:60
chr1	165695645	.	A	.	.	PASS	END=165695725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr1	165695726	.	T	C	2547.64	PASS	BaseQRankSum=-1.067;DP=244;Dels=0.00;FS=3.026;HRun=0;HaplotypeScore=16.3861;MQ=60;MQ0=0;MQRankSum=2.275;QD=10.44;ReadPosRankSum=-1.978;SB=-1207.92	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:135,109:244:99:2578,0,3695:60:99:0.447
chr1	165695727	.	T	.	.	PASS	END=165695854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	165695855	.	C	T	6088.35	PASS	DP=207;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=24.7771;MQ=60;MQ0=0;QD=29.41;SB=-2537.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,205:207:99:6088,472,0:60:99:1.000
chr1	165695856	.	T	.	.	PASS	END=165696020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	165696021	.	A	.	.	PASS	END=165696137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	165696138	.	C	.	.	PASS	END=165696276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr1	165696277	.	A	.	.	PASS	END=165696417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:303:99:60
chr1	165696418	.	T	.	.	PASS	END=165696437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	165696438	.	A	.	.	PASS	END=165696581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	165696582	.	C	.	.	PASS	END=165696642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	165696643	.	C	.	.	PASS	END=165696789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	165696790	.	C	.	.	PASS	END=165696927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:259:99:60
chr1	165696928	.	G	.	.	PASS	END=165696940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:245:99:60
chr1	165696941	.	A	.	.	PASS	END=165696954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	165696955	.	C	.	.	PASS	END=165697159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	165697160	.	C	.	.	PASS	END=165697296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	165697297	.	A	.	.	PASS	END=165697339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	165697340	.	C	.	.	PASS	END=165697366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	165697367	.	A	.	.	PASS	END=165697387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	165697388	.	T	.	.	PASS	END=165697409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	165712353	.	T	.	.	PASS	END=165712393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	165712394	.	G	.	.	PASS	END=165712419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	165712420	.	G	.	.	PASS	END=165712489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	165712490	.	G	.	.	PASS	END=165712554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	165712555	.	G	.	134.95	PASS	DP=103;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:67:103:99:60:99
chr1	165712556	.	A	.	.	PASS	END=165712592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	165712593	.	G	.	.	PASS	END=165712599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	165721288	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:93:60
chr1	165721289	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:61:60
chr1	165721290	.	A	.	.	PASS	END=165721309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	165721310	.	T	.	.	PASS	END=165721341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	165721342	.	G	.	.	PASS	END=165721439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	165721440	.	T	.	.	PASS	END=165721457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:59
chr1	165723414	.	T	.	.	PASS	END=165723472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	165723473	.	G	.	.	PASS	END=165723527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	165723528	.	A	.	.	PASS	END=165723549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	165723550	.	T	.	.	PASS	END=165723562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	165728711	.	T	.	.	PASS	END=165728839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	165728840	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:48:60
chr1	165728841	.	A	.	.	PASS	END=165728872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	165737378	.	C	.	.	PASS	END=165737487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	165737488	.	A	.	.	PASS	END=165737535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	165737536	.	A	.	.	PASS	END=165737557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	165737646	.	C	.	.	PASS	END=165737686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	165737687	.	G	.	.	PASS	END=165737703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	165737704	.	C	G	4216.67	PASS	BaseQRankSum=1.490;DP=143;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=10.4586;MQ=60;MQ0=0;MQRankSum=1.587;QD=29.49;ReadPosRankSum=1.563;SB=-2322.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,142:143:99:4217,331,0:60:99:0.993
chr1	165737705	.	C	.	.	PASS	END=165737752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	165737868	.	G	.	.	PASS	END=165737911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	165737912	.	C	.	.	PASS	END=165737946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	165737947	.	G	.	.	PASS	END=165737975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	165737976	.	A	.	.	PASS	END=165738040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	165738041	.	C	.	.	PASS	END=165738086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	165738087	.	C	.	.	PASS	END=165738108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	165738109	.	A	.	.	PASS	END=165738138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	165738139	.	C	.	.	PASS	END=165738159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	165797011	.	G	.	.	LowGQX	END=165797171	GT	./.
chr1	165859439	.	A	.	.	LowGQX	END=165859515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165859516	.	C	.	.	LowGQX	.	GT	./.
chr1	165859517	.	T	.	.	LowGQX	END=165859527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165859528	.	A	.	.	LowGQX	.	GT	./.
chr1	165859529	.	G	.	.	LowGQX	END=165859532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165859533	.	C	.	.	LowGQX	END=165859602	GT	./.
chr1	165860461	.	A	.	.	LowGQX	END=165860561	GT	./.
chr1	165865425	.	A	.	.	LowGQX	END=165865461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165865462	.	T	.	.	LowGQX	.	GT	./.
chr1	165865463	.	G	.	.	LowGQX	END=165865467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	165865468	.	T	.	.	LowGQX	END=165865571	GT	./.
chr1	165872417	.	A	.	.	LowGQX	END=165872518	GT	./.
chr1	165875133	.	G	.	.	LowGQX	END=165875232	GT	./.
chr1	165876919	.	A	.	.	LowGQX	END=165877062	GT	./.
chr1	166029731	.	T	.	.	LowGQX	END=166029900	GT	./.
chr1	166039476	.	T	.	.	LowGQX	END=166040002	GT	./.
chr1	166123958	.	C	.	.	LowGQX	END=166124057	GT	./.
chr1	166135211	.	C	.	.	LowGQX	END=166135487	GT	./.
chr1	166590054	.	A	.	.	LowGQX	END=166590188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	166590189	.	A	.	.	LowGQX	END=166590243	GT	./.
chr1	166591107	.	A	.	.	LowGQX	END=166591119	GT	./.
chr1	166591120	.	G	.	.	LowGQX	END=166591269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166592881	.	G	.	.	LowGQX	END=166593023	GT	./.
chr1	166593871	.	A	.	.	LowGQX	END=166593881	GT	./.
chr1	166593882	.	C	.	.	LowGQX	END=166593970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166810192	.	A	.	.	LowGQX	END=166810196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166810197	.	G	.	.	LowGQX	.	GT	./.
chr1	166810198	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166810199	.	G	.	.	LowGQX	END=166810200	GT	./.
chr1	166810201	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166810202	.	C	.	.	LowGQX	.	GT	./.
chr1	166810203	.	A	.	.	LowGQX	END=166810208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166810209	.	T	.	.	LowGQX	.	GT	./.
chr1	166810210	.	A	.	.	LowGQX	END=166810219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166810220	.	T	.	.	LowGQX	END=166810221	GT	./.
chr1	166810222	.	T	.	.	LowGQX	END=166810225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166810226	.	C	.	.	LowGQX	.	GT	./.
chr1	166810227	.	C	.	.	LowGQX	END=166810228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166810229	.	G	.	.	LowGQX	.	GT	./.
chr1	166810230	.	A	.	.	LowGQX	END=166810233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166810234	.	A	.	.	LowGQX	.	GT	./.
chr1	166810235	.	A	.	.	LowGQX	END=166810255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166810256	.	T	.	.	LowGQX	.	GT	./.
chr1	166810257	.	C	.	.	LowGQX	END=166810295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166810296	.	A	.	.	LowGQX	.	GT	./.
chr1	166810297	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166810298	.	A	.	.	LowGQX	.	GT	./.
chr1	166810299	.	G	.	.	LowGQX	END=166810300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166810301	.	A	.	.	LowGQX	.	GT	./.
chr1	166810302	.	C	.	.	LowGQX	END=166810304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166810305	.	A	.	.	LowGQX	.	GT	./.
chr1	166810306	.	T	.	.	LowGQX	END=166810321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166810322	.	A	.	.	LowGQX	END=166810323	GT	./.
chr1	166810324	.	G	.	.	LowGQX	END=166810327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166815847	.	A	.	.	LowGQX	END=166815949	GT	./.
chr1	166815950	.	G	.	.	LowGQX	END=166815951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166815952	.	A	.	.	LowGQX	.	GT	./.
chr1	166815953	.	T	.	.	LowGQX	END=166815957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166815958	.	A	.	.	LowGQX	.	GT	./.
chr1	166815959	.	A	.	.	LowGQX	END=166815961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166815962	.	T	.	.	LowGQX	.	GT	./.
chr1	166815963	.	G	.	.	LowGQX	END=166815970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166815971	.	C	.	.	LowGQX	.	GT	./.
chr1	166815972	.	C	.	.	LowGQX	END=166815975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166815976	.	G	.	.	LowGQX	.	GT	./.
chr1	166815977	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166816729	.	A	.	.	LowGQX	END=166816775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166816776	.	A	.	.	LowGQX	.	GT	./.
chr1	166816777	.	G	.	.	LowGQX	END=166816831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166818173	.	A	.	.	LowGQX	END=166818313	GT	./.
chr1	166818314	.	G	.	.	LowGQX	END=166818453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	166818454	.	A	.	.	LowGQX	END=166818862	GT	./.
chr1	166818863	.	G	.	.	LowGQX	END=166818886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166818887	.	A	.	.	LowGQX	.	GT	./.
chr1	166818888	.	G	.	.	LowGQX	END=166819077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166819078	.	A	.	.	LowGQX	END=166819233	GT	./.
chr1	166819234	.	T	.	.	LowGQX	END=166819372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	166819373	.	G	.	.	LowGQX	END=166819559	GT	./.
chr1	166819560	.	G	.	.	LowGQX	END=166819648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	166826802	.	A	.	.	LowGQX	END=166826806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826807	.	G	.	.	LowGQX	.	GT	./.
chr1	166826808	.	C	.	.	LowGQX	END=166826811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826812	.	G	.	.	LowGQX	END=166826813	GT	./.
chr1	166826814	.	A	.	.	LowGQX	END=166826816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826817	.	A	.	.	LowGQX	.	GT	./.
chr1	166826818	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826819	.	C	.	.	LowGQX	.	GT	./.
chr1	166826820	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826821	.	C	.	.	LowGQX	.	GT	./.
chr1	166826822	.	C	.	.	LowGQX	END=166826823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826824	.	C	.	.	LowGQX	.	GT	./.
chr1	166826825	.	C	.	.	LowGQX	END=166826831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826832	.	G	.	.	LowGQX	.	GT	./.
chr1	166826833	.	C	.	.	LowGQX	END=166826835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826836	.	A	.	.	LowGQX	.	GT	./.
chr1	166826837	.	G	.	.	LowGQX	END=166826838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826839	.	G	.	.	LowGQX	END=166826840	GT	./.
chr1	166826841	.	T	.	.	LowGQX	END=166826843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826844	.	C	.	.	LowGQX	.	GT	./.
chr1	166826845	.	G	.	.	LowGQX	END=166826849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826850	.	A	.	.	LowGQX	.	GT	./.
chr1	166826851	.	C	.	.	LowGQX	END=166826853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826854	.	T	.	.	LowGQX	.	GT	./.
chr1	166826855	.	G	.	.	LowGQX	END=166826858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826859	.	T	.	.	LowGQX	.	GT	./.
chr1	166826860	.	G	.	.	LowGQX	END=166826867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826868	.	T	.	.	LowGQX	END=166826869	GT	./.
chr1	166826870	.	T	.	.	LowGQX	END=166826875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826876	.	A	.	.	LowGQX	.	GT	./.
chr1	166826877	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826878	.	T	.	.	LowGQX	.	GT	./.
chr1	166826879	.	T	.	.	LowGQX	END=166826892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826893	.	T	.	.	LowGQX	.	GT	./.
chr1	166826894	.	C	.	.	LowGQX	END=166826897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826898	.	A	.	.	LowGQX	END=166826899	GT	./.
chr1	166826900	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826901	.	A	.	.	LowGQX	END=166826902	GT	./.
chr1	166826903	.	C	.	.	LowGQX	END=166826926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166826927	.	A	.	.	LowGQX	END=166826958	GT	./.
chr1	166827323	.	A	.	.	LowGQX	END=166827382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166827383	.	G	.	.	LowGQX	END=166827520	GT	./.
chr1	166829421	.	A	.	.	LowGQX	END=166829458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	166829459	.	T	.	.	LowGQX	END=166829560	GT	./.
chr1	166829561	.	T	.	.	LowGQX	END=166829576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	166831438	.	A	.	.	LowGQX	END=166831651	GT	./.
chr1	166832985	.	T	.	.	LowGQX	END=166833001	GT	./.
chr1	166833002	.	G	.	.	LowGQX	END=166833177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166833178	.	A	.	.	LowGQX	END=166833204	GT	./.
chr1	166838665	.	T	.	.	LowGQX	END=166838764	GT	./.
chr1	166838996	.	T	.	.	LowGQX	END=166839095	GT	./.
chr1	166845384	.	G	.	.	LowGQX	END=166845483	GT	./.
chr1	166888524	.	C	.	.	LowGQX	END=166888598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	166888599	.	A	.	.	LowGQX	END=166888629	GT	./.
chr1	166889942	.	A	.	.	LowGQX	END=166890052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166890053	.	G	.	.	LowGQX	END=166890205	GT	./.
chr1	166890206	.	C	.	.	LowGQX	END=166890369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166890370	.	C	.	.	LowGQX	END=166890618	GT	./.
chr1	166891828	.	A	.	.	LowGQX	END=166891865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166891866	.	T	.	.	LowGQX	END=166891913	GT	./.
chr1	166891914	.	C	.	.	LowGQX	END=166892037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	166892038	.	T	.	.	LowGQX	END=166892048	GT	./.
chr1	166896302	.	A	.	.	LowGQX	END=166896419	GT	./.
chr1	166904525	.	G	.	.	LowGQX	END=166904716	GT	./.
chr1	166905826	.	A	.	.	LowGQX	END=166905976	GT	./.
chr1	166908730	.	A	.	.	LowGQX	END=166908741	GT	./.
chr1	166908742	.	A	.	.	LowGQX	END=166908829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166925968	.	A	.	.	LowGQX	END=166926065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166926066	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	166926067	.	C	.	.	LowGQX	END=166926091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166927004	.	A	.	.	LowGQX	END=166927077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166927078	.	C	.	.	LowGQX	.	GT	./.
chr1	166927079	.	T	.	.	LowGQX	END=166927165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166927166	.	G	.	.	LowGQX	.	GT	./.
chr1	166927167	.	G	.	.	LowGQX	END=166927174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166927175	.	C	.	.	LowGQX	END=166927340	GT	./.
chr1	166944433	.	T	.	.	LowGQX	END=166944532	GT	./.
chr1	166958588	.	C	.	.	LowGQX	END=166958723	GT	./.
chr1	166958971	.	A	.	.	LowGQX	END=166959070	GT	./.
chr1	166960613	.	A	.	.	LowGQX	END=166960638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166960639	.	A	.	.	LowGQX	END=166960716	GT	./.
chr1	166961921	.	A	.	.	LowGQX	END=166962043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166962044	.	T	.	.	LowGQX	END=166962080	GT	./.
chr1	166963236	.	G	.	.	LowGQX	END=166963335	GT	./.
chr1	166973415	.	A	.	.	LowGQX	END=166973543	GT	./.
chr1	166974291	.	T	.	.	LowGQX	END=166974304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166974305	.	T	.	.	LowGQX	END=166974306	GT	./.
chr1	166974307	.	C	.	.	LowGQX	END=166974311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166974312	.	G	.	.	LowGQX	.	GT	./.
chr1	166974313	.	T	.	.	LowGQX	END=166974322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166974323	.	G	.	.	LowGQX	.	GT	./.
chr1	166974324	.	A	.	.	LowGQX	END=166974352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166974353	.	T	.	.	LowGQX	.	GT	./.
chr1	166974354	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166974355	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	166974356	.	C	.	.	LowGQX	END=166974358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166974359	.	A	.	.	LowGQX	.	GT	./.
chr1	166974360	.	G	.	.	LowGQX	END=166974363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166974364	.	T	.	.	LowGQX	.	GT	./.
chr1	166974365	.	C	.	.	LowGQX	END=166974366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166974367	.	G	.	.	LowGQX	.	GT	./.
chr1	166974368	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166974369	.	T	.	.	LowGQX	END=166974390	GT	./.
chr1	166974491	.	A	.	.	LowGQX	END=166974636	GT	./.
chr1	166985373	.	A	.	.	LowGQX	END=166985539	GT	./.
chr1	166987062	.	A	.	.	LowGQX	END=166987198	GT	./.
chr1	166990250	.	T	.	.	LowGQX	END=166990295	GT	./.
chr1	166990296	.	C	.	.	LowGQX	END=166990400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	166990401	.	A	.	.	LowGQX	.	GT	./.
chr1	166990402	.	G	.	.	LowGQX	END=166990409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	166990903	.	A	.	.	LowGQX	END=166991094	GT	./.
chr1	167023569	.	T	.	.	LowGQX	END=167023609	GT	./.
chr1	167023610	.	C	.	.	LowGQX	END=167023662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167023663	.	C	.	.	LowGQX	.	GT	./.
chr1	167023664	.	T	.	.	LowGQX	END=167023705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167024211	.	A	.	.	LowGQX	END=167024350	GT	./.
chr1	167024965	.	A	.	.	LowGQX	END=167024966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167024967	.	G	.	.	LowGQX	.	GT	./.
chr1	167024968	.	A	.	.	LowGQX	END=167024973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167024974	.	G	.	.	LowGQX	END=167024975	GT	./.
chr1	167024976	.	C	.	.	LowGQX	END=167024984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167024985	.	T	.	.	LowGQX	.	GT	./.
chr1	167024986	.	G	.	.	LowGQX	END=167024987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167024988	.	T	.	.	LowGQX	.	GT	./.
chr1	167024989	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167024990	.	T	.	.	LowGQX	.	GT	./.
chr1	167024991	.	T	.	.	LowGQX	END=167024993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167024994	.	A	.	.	LowGQX	.	GT	./.
chr1	167024995	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167024996	.	A	.	.	LowGQX	END=167024997	GT	./.
chr1	167024998	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167024999	.	T	.	.	LowGQX	.	GT	./.
chr1	167025000	.	G	.	.	LowGQX	END=167025003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167025004	.	C	.	.	LowGQX	.	GT	./.
chr1	167025005	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167025006	.	C	.	.	LowGQX	.	GT	./.
chr1	167025007	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167025008	.	T	.	.	LowGQX	.	GT	./.
chr1	167025009	.	C	.	.	LowGQX	END=167025014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167025015	.	T	.	.	LowGQX	.	GT	./.
chr1	167025016	.	G	.	.	LowGQX	END=167025019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167025020	.	G	.	.	LowGQX	.	GT	./.
chr1	167025021	.	A	.	.	LowGQX	END=167025023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167025024	.	T	.	.	LowGQX	.	GT	./.
chr1	167025025	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167025026	.	C	.	.	LowGQX	END=167025055	GT	./.
chr1	167025056	.	A	.	.	LowGQX	END=167025059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167025060	.	T	.	.	LowGQX	.	GT	./.
chr1	167025061	.	C	.	.	LowGQX	END=167025064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167025065	.	A	.	.	LowGQX	.	GT	./.
chr1	167025066	.	G	.	.	LowGQX	END=167025071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167025072	.	C	.	.	LowGQX	END=167025074	GT	./.
chr1	167025075	.	G	.	.	LowGQX	END=167025088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167032817	.	A	.	.	LowGQX	END=167032826	GT	./.
chr1	167032827	.	G	.	.	LowGQX	END=167032831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167032832	.	G	.	.	LowGQX	.	GT	./.
chr1	167032833	.	G	.	.	LowGQX	END=167032842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167032843	.	G	.	.	LowGQX	.	GT	./.
chr1	167032844	.	A	.	.	LowGQX	END=167032870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167032871	.	G	.	.	LowGQX	.	GT	./.
chr1	167032872	.	T	.	.	LowGQX	END=167032876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167032877	.	A	.	.	LowGQX	.	GT	./.
chr1	167032878	.	G	.	.	LowGQX	END=167032881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167032882	.	T	.	.	LowGQX	.	GT	./.
chr1	167032883	.	T	.	.	LowGQX	END=167032907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167032908	.	G	.	.	LowGQX	.	GT	./.
chr1	167032909	.	T	.	.	LowGQX	END=167032983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167032984	.	G	.	.	LowGQX	END=167032986	GT	./.
chr1	167032987	.	G	.	.	LowGQX	END=167033004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167033005	.	T	.	.	LowGQX	.	GT	./.
chr1	167033006	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167038157	.	A	.	.	LowGQX	END=167038377	GT	./.
chr1	167042620	.	A	.	.	LowGQX	END=167042778	GT	./.
chr1	167051466	.	T	.	.	LowGQX	END=167051565	GT	./.
chr1	167059454	.	G	.	.	LowGQX	END=167059553	GT	./.
chr1	167064085	.	T	.	.	LowGQX	END=167064101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167064102	.	G	.	.	LowGQX	END=167064198	GT	./.
chr1	167082945	.	A	.	.	LowGQX	END=167083004	GT	./.
chr1	167083005	.	T	.	.	LowGQX	END=167083030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	167083031	.	C	.	.	LowGQX	.	GT	./.
chr1	167083032	.	A	.	.	LowGQX	END=167083044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	167086563	.	A	.	.	LowGQX	END=167086798	GT	./.
chr1	167088484	.	A	.	.	LowGQX	END=167088558	GT	./.
chr1	167088559	.	G	.	.	LowGQX	END=167088600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	167088601	.	C	A	9.30	LowGQX	BaseQRankSum=0.000;DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=1.026;QD=2.32;ReadPosRankSum=-1.026;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:38.75:39,0,39:60:9:0.500
chr1	167088602	.	A	.	.	LowGQX	END=167088656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	167088657	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	167088658	.	C	.	.	LowGQX	END=167088704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	167088705	.	T	.	.	LowGQX	.	GT	./.
chr1	167095022	.	A	.	.	LowGQX	END=167095067	GT	./.
chr1	167095068	.	G	.	.	LowGQX	END=167095162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167095163	.	G	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	167095164	.	G	.	.	LowGQX	END=167095278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167095279	.	T	.	.	LowGQX	END=167095354	GT	./.
chr1	167095355	.	G	.	.	LowGQX	END=167095458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	167095459	.	A	.	.	LowGQX	END=167095772	GT	./.
chr1	167095773	.	G	.	.	LowGQX	END=167095804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167095805	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	167095806	.	T	.	.	LowGQX	END=167095936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167095937	.	G	.	.	LowGQX	END=167096174	GT	./.
chr1	167096175	.	G	.	.	LowGQX	END=167096329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096330	.	C	.	.	LowGQX	.	GT	./.
chr1	167096331	.	G	.	.	LowGQX	END=167096340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096341	.	C	.	.	LowGQX	.	GT	./.
chr1	167096342	.	C	.	.	LowGQX	END=167096356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096357	.	G	.	.	LowGQX	.	GT	./.
chr1	167096358	.	T	.	.	LowGQX	END=167096365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096366	.	C	.	.	LowGQX	.	GT	./.
chr1	167096367	.	C	.	.	LowGQX	END=167096374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096375	.	C	.	.	LowGQX	END=167096449	GT	./.
chr1	167096450	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096451	.	A	.	.	LowGQX	.	GT	./.
chr1	167096452	.	T	.	.	LowGQX	END=167096456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096457	.	G	.	.	LowGQX	.	GT	./.
chr1	167096458	.	G	.	.	LowGQX	END=167096471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096472	.	A	.	.	LowGQX	.	GT	./.
chr1	167096473	.	A	.	.	LowGQX	END=167096477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096478	.	A	.	.	LowGQX	.	GT	./.
chr1	167096479	.	C	.	.	LowGQX	END=167096483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096484	.	C	.	.	LowGQX	.	GT	./.
chr1	167096485	.	C	.	.	LowGQX	END=167096492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096493	.	A	.	.	LowGQX	.	GT	./.
chr1	167096494	.	A	.	.	LowGQX	END=167096507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096508	.	C	.	.	LowGQX	.	GT	./.
chr1	167096509	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096510	.	T	.	.	LowGQX	.	GT	./.
chr1	167096511	.	G	.	.	LowGQX	END=167096514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096515	.	A	.	.	LowGQX	.	GT	./.
chr1	167096516	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096517	.	A	.	.	LowGQX	.	GT	./.
chr1	167096518	.	C	.	.	LowGQX	END=167096528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096529	.	G	.	.	LowGQX	.	GT	./.
chr1	167096530	.	C	.	.	LowGQX	END=167096547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096548	.	T	.	.	LowGQX	.	GT	./.
chr1	167096549	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096550	.	G	.	.	LowGQX	.	GT	./.
chr1	167096551	.	C	.	.	LowGQX	END=167096552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096553	.	A	.	.	LowGQX	.	GT	./.
chr1	167096554	.	A	.	.	LowGQX	END=167096565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096566	.	A	.	.	LowGQX	.	GT	./.
chr1	167096567	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096568	.	A	.	.	LowGQX	END=167096569	GT	./.
chr1	167096570	.	C	.	.	LowGQX	END=167096574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096575	.	C	.	.	LowGQX	.	GT	./.
chr1	167096576	.	T	.	.	LowGQX	END=167096583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096584	.	A	.	.	LowGQX	.	GT	./.
chr1	167096585	.	A	.	.	LowGQX	END=167096597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096598	.	C	.	.	LowGQX	END=167096601	GT	./.
chr1	167096602	.	T	.	.	LowGQX	END=167096603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096604	.	T	.	.	LowGQX	END=167096605	GT	./.
chr1	167096606	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096607	.	C	.	.	LowGQX	.	GT	./.
chr1	167096608	.	G	.	.	LowGQX	END=167096611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096612	.	A	.	.	LowGQX	.	GT	./.
chr1	167096613	.	C	.	.	LowGQX	END=167096622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096623	.	C	.	.	LowGQX	END=167096624	GT	./.
chr1	167096625	.	A	.	.	LowGQX	END=167096635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096636	.	A	.	.	LowGQX	.	GT	./.
chr1	167096637	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096638	.	T	.	.	LowGQX	.	GT	./.
chr1	167096639	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096640	.	C	.	.	LowGQX	.	GT	./.
chr1	167096641	.	C	.	.	LowGQX	END=167096642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096643	.	G	.	.	LowGQX	.	GT	./.
chr1	167096644	.	C	.	.	LowGQX	END=167096646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096647	.	C	.	.	LowGQX	.	GT	./.
chr1	167096648	.	T	.	.	LowGQX	END=167096655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096656	.	T	.	.	LowGQX	.	GT	./.
chr1	167096657	.	G	.	.	LowGQX	END=167096672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096673	.	T	.	.	LowGQX	.	GT	./.
chr1	167096674	.	C	.	.	LowGQX	END=167096683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096684	.	T	.	.	LowGQX	.	GT	./.
chr1	167096685	.	G	.	.	LowGQX	END=167096686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096687	.	A	.	.	LowGQX	.	GT	./.
chr1	167096688	.	C	.	.	LowGQX	END=167096692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096693	.	C	.	.	LowGQX	.	GT	./.
chr1	167096694	.	A	.	.	LowGQX	END=167096697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096698	.	C	.	.	LowGQX	.	GT	./.
chr1	167096699	.	C	.	.	LowGQX	END=167096701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096702	.	C	.	.	LowGQX	.	GT	./.
chr1	167096703	.	T	.	.	LowGQX	END=167096707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096708	.	T	.	.	LowGQX	.	GT	./.
chr1	167096709	.	G	.	.	LowGQX	END=167096711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096712	.	T	.	.	LowGQX	.	GT	./.
chr1	167096713	.	G	.	.	LowGQX	END=167096717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096718	.	T	.	.	LowGQX	END=167096719	GT	./.
chr1	167096720	.	G	.	.	LowGQX	END=167096736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096737	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	167096738	.	A	.	.	LowGQX	END=167096878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096879	.	C	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr1	167096880	.	C	.	.	LowGQX	END=167096988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167096989	.	T	.	.	LowGQX	END=167096990	GT	./.
chr1	167096991	.	A	.	.	LowGQX	END=167097040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167097041	.	T	.	.	LowGQX	.	GT	./.
chr1	167097042	.	G	.	.	LowGQX	END=167097048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167097049	.	G	.	.	LowGQX	END=167097847	GT	./.
chr1	167190115	.	T	.	.	LowGQX	END=167190214	GT	./.
chr1	167298480	.	T	.	.	LowGQX	END=167298579	GT	./.
chr1	167301691	.	C	.	.	LowGQX	END=167301790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167307360	.	C	.	.	LowGQX	END=167307519	GT	./.
chr1	167334702	.	A	.	.	LowGQX	END=167334806	GT	./.
chr1	167339375	.	G	.	.	LowGQX	END=167339474	GT	./.
chr1	167341102	.	T	.	.	LowGQX	END=167341275	GT	./.
chr1	167343303	.	C	.	.	LowGQX	END=167343353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167343354	.	A	.	.	LowGQX	.	GT	./.
chr1	167343355	.	C	.	.	LowGQX	END=167343399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167343400	.	C	.	.	LowGQX	END=167343404	GT	./.
chr1	167343405	.	C	.	.	LowGQX	END=167343454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167343455	.	T	.	.	LowGQX	.	GT	./.
chr1	167343456	.	G	.	.	LowGQX	END=167343535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167345264	.	A	.	.	LowGQX	END=167345394	GT	./.
chr1	167353092	.	A	.	.	LowGQX	END=167353144	GT	./.
chr1	167353145	.	C	.	.	LowGQX	END=167353191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167356377	.	T	.	.	LowGQX	END=167356476	GT	./.
chr1	167358823	.	A	.	.	LowGQX	END=167358878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167358879	.	A	.	.	LowGQX	END=167359000	GT	./.
chr1	167365521	.	A	.	.	LowGQX	END=167365666	GT	./.
chr1	167367229	.	A	.	.	LowGQX	END=167367249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167367250	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	167367251	.	T	.	.	LowGQX	END=167367332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167367333	.	C	.	.	LowGQX	END=167367372	GT	./.
chr1	167368421	.	A	.	.	LowGQX	END=167368604	GT	./.
chr1	167370686	.	A	.	.	LowGQX	END=167370737	GT	./.
chr1	167370738	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	167370739	.	G	.	.	LowGQX	.	GT	./.
chr1	167370740	.	T	.	.	LowGQX	END=167370795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	167381194	.	A	.	.	LowGQX	END=167381543	GT	./.
chr1	167382258	.	T	.	.	LowGQX	END=167382357	GT	./.
chr1	167384735	.	A	.	.	LowGQX	END=167385049	GT	./.
chr1	167385256	.	T	.	.	LowGQX	END=167385355	GT	./.
chr1	167400867	.	T	.	.	PASS	END=167400938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	167400939	.	C	.	.	PASS	END=167401014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	167401015	.	T	.	.	PASS	END=167401032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	167401033	.	G	.	.	PASS	END=167401034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	167402210	.	C	.	.	PASS	END=167402230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	167402231	.	T	.	.	PASS	END=167402264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	167402265	.	T	.	.	PASS	END=167402348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	167403206	.	C	.	.	PASS	END=167403211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	167403212	.	G	A	1004.97	PASS	BaseQRankSum=1.842;DP=74;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=16.2451;MQ=60;MQ0=0;MQRankSum=-0.560;QD=13.58;ReadPosRankSum=1.669;SB=-598.68	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,44:74:99:1035,0,640:60:99:0.611
chr1	167403213	.	A	.	.	PASS	END=167403270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	167403271	.	C	.	.	PASS	END=167403309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	167403310	.	G	.	.	PASS	END=167403326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	167403327	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:63:60
chr1	167403328	.	G	.	.	PASS	END=167403354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	167403355	.	G	.	.	PASS	END=167403364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	167404060	.	G	.	.	LowGQX	END=167404068	GT	./.
chr1	167404069	.	A	.	.	LowGQX	END=167404077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167404078	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	167404079	.	A	.	.	LowGQX	END=167404096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167404097	.	T	.	.	LowGQX	.	GT	./.
chr1	167404098	.	G	.	.	LowGQX	END=167404127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167404128	.	A	.	.	LowGQX	.	GT	./.
chr1	167404129	.	C	.	.	LowGQX	END=167404153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167404154	.	A	.	.	LowGQX	END=167404155	GT	./.
chr1	167404156	.	C	.	.	LowGQX	END=167404166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167404167	.	G	.	.	LowGQX	END=167404304	GT	./.
chr1	167404309	.	C	.	.	LowGQX;LowMQ	END=167404327	GT	./.
chr1	167404328	.	G	.	.	LowGQX	END=167404338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:36
chr1	167404339	.	A	.	.	LowGQX	.	GT	./.
chr1	167404340	.	G	.	.	LowGQX	END=167404344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:36
chr1	167404345	.	T	.	33	LowGQX	DP=3;MQ=36;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:36:3
chr1	167404346	.	C	.	.	LowGQX	END=167404349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:36
chr1	167404350	.	C	.	.	LowGQX	.	GT	./.
chr1	167404351	.	G	.	.	LowGQX	END=167404352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:36
chr1	167404353	.	A	C	7.08	LowGQ;LowGQX;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.3660;MQ=36;MQ0=0;MQRankSum=0.736;QD=2.36;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,1:3:3.01:36,3,0:36:3:0.333
chr1	167404354	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:36
chr1	167404355	.	C	.	.	LowGQX	END=167404356	GT	./.
chr1	167404357	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:36
chr1	167404358	.	T	.	.	LowGQX	.	GT	./.
chr1	167404359	.	C	.	.	LowGQX	END=167404360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:31
chr1	167404361	.	T	.	.	LowGQX	END=167404365	GT	./.
chr1	167404366	.	C	.	.	LowGQX	END=167404367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:36
chr1	167404368	.	C	.	.	LowGQX	END=167404369	GT	./.
chr1	167404370	.	T	.	.	LowGQX	END=167404371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:36
chr1	167404372	.	C	.	.	LowGQX	.	GT	./.
chr1	167404373	.	T	.	.	LowGQX;LowMQ	END=167404378	GT	./.
chr1	167404379	.	C	.	.	LowGQX	END=167404380	GT	./.
chr1	167404381	.	T	.	.	LowGQX;LowMQ	END=167404481	GT	./.
chr1	167404482	.	C	.	.	LowGQX;LowMQ	END=167404483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:3:7
chr1	167404484	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	167404485	.	C	.	.	LowGQX;LowMQ	END=167404489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:3:7
chr1	167404490	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	167404491	.	C	.	.	LowGQX;LowMQ	END=167404492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:3:8
chr1	167404493	.	T	.	.	LowGQX	END=167404496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:6:20
chr1	167404497	.	C	.	.	LowGQX;LowMQ	END=167404498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:9:19
chr1	167404499	.	G	.	.	LowGQX	END=167404504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:6:20
chr1	167404505	.	C	.	.	LowGQX	END=167404506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:3:20
chr1	167404507	.	C	.	.	LowGQX	END=167404511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:12:30
chr1	167404512	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:9:30
chr1	167404513	.	G	.	.	LowGQX	END=167404524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:15:33
chr1	167404525	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:9:39
chr1	167404526	.	C	.	.	LowGQX	END=167404527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:39
chr1	167404528	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:44
chr1	167404529	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:44
chr1	167404530	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:46
chr1	167404531	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:46
chr1	167404532	.	C	.	.	LowGQX	END=167404533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:49
chr1	167404534	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:49
chr1	167404535	.	T	.	54.05	LowGQX	DP=14;MQ=49;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:11:14:24.05:49:24
chr1	167404536	.	G	.	.	LowGQX	END=167404540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:49
chr1	167404541	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:18:49
chr1	167404542	.	C	.	.	LowGQX	END=167404543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:49
chr1	167404544	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:33:51
chr1	167404545	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:3:51
chr1	167404546	.	T	.	.	PASS	END=167404548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:51
chr1	167404549	.	A	.	.	PASS	END=167404550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:53
chr1	167404551	.	C	.	.	PASS	END=167404556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:54
chr1	167404557	.	C	.	.	PASS	END=167404560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:56
chr1	167404561	.	A	.	.	PASS	END=167404562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:42:56
chr1	167404563	.	C	.	.	PASS	END=167404568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:51:56
chr1	167404569	.	C	.	.	PASS	END=167404577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:57:57
chr1	167404578	.	C	.	.	PASS	END=167404585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:58
chr1	167404586	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:59:59
chr1	167404587	.	G	.	.	PASS	END=167404590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:59
chr1	167404591	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:72:59
chr1	167404592	.	T	.	.	PASS	END=167404599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:59
chr1	167404600	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:64:59
chr1	167404601	.	T	.	.	PASS	END=167404624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:59
chr1	167404625	.	C	.	.	PASS	END=167404638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	167404639	.	G	.	.	PASS	END=167404663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	167404664	.	C	.	.	PASS	END=167404723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	167407756	.	T	.	.	PASS	END=167407786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	167407787	.	G	.	.	PASS	END=167407892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	167407893	.	A	.	.	PASS	END=167407903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	167407904	.	A	.	.	PASS	END=167407936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	167407937	.	G	.	.	PASS	END=167407938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	167408530	.	A	.	.	PASS	END=167408564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	167408565	.	G	T	985.96	PASS	BaseQRankSum=2.051;DP=70;Dels=0.00;FS=9.097;HRun=0;HaplotypeScore=4.7873;MQ=60;MQ0=0;MQRankSum=-1.061;QD=14.09;ReadPosRankSum=1.013;SB=-567.87	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:29,41:70:99:1016,0,691:60:99:0.586
chr1	167408566	.	G	.	.	PASS	END=167408583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	167408584	.	A	.	.	PASS	END=167408669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	167408670	.	C	T	1096.64	PASS	BaseQRankSum=0.243;DP=93;Dels=0.00;FS=13.604;HRun=1;HaplotypeScore=11.5638;MQ=60;MQ0=0;MQRankSum=-0.060;QD=11.79;ReadPosRankSum=1.150;SB=-718.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,49:93:99:1127,0,1087:60:99:0.538
chr1	167408671	.	C	.	.	PASS	END=167408688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	167409850	.	C	.	.	PASS	END=167409864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	167409865	.	C	.	.	PASS	END=167409889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	167409890	.	G	.	.	PASS	END=167409923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	167409924	.	T	.	.	PASS	END=167409939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	167409940	.	G	.	.	PASS	END=167410015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	167410016	.	G	.	.	PASS	END=167410049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	167410050	.	A	.	.	PASS	END=167410055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	167487584	.	C	.	.	PASS	END=167487620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	167487621	.	C	.	.	PASS	END=167487718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	167487719	.	G	.	.	PASS	END=167487734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	167487735	.	C	.	.	PASS	END=167487753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	167511487	.	C	.	.	LowGQX	END=167511586	GT	./.
chr1	167515336	.	A	.	.	LowGQX	END=167515524	GT	./.
chr1	167517237	.	A	.	.	LowGQX	END=167517360	GT	./.
chr1	167522623	.	A	.	.	LowGQX	END=167522980	GT	./.
chr1	167599614	.	G	.	.	LowGQX	END=167599713	GT	./.
chr1	167653135	.	A	.	.	LowGQX	END=167653240	GT	./.
chr1	167654653	.	T	.	.	LowGQX	END=167654752	GT	./.
chr1	167659272	.	G	.	.	LowGQX	END=167659279	GT	./.
chr1	167659280	.	C	.	.	LowGQX	END=167659295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167659296	.	C	.	.	LowGQX	.	GT	./.
chr1	167659297	.	C	.	.	LowGQX	END=167659309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167659310	.	C	.	.	LowGQX	.	GT	./.
chr1	167659311	.	C	.	.	LowGQX	END=167659335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167659336	.	G	.	.	LowGQX	.	GT	./.
chr1	167659337	.	C	.	.	LowGQX	END=167659371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	167663334	.	A	.	.	LowGQX	END=167663541	GT	./.
chr1	167666334	.	A	.	.	LowGQX	END=167667081	GT	./.
chr1	167673858	.	C	.	.	LowGQX	END=167673957	GT	./.
chr1	167691385	.	G	.	.	LowGQX	END=167691535	GT	./.
chr1	167734807	.	C	.	.	LowGQX	END=167734988	GT	./.
chr1	167741510	.	A	.	.	LowGQX	END=167741727	GT	./.
chr1	167742471	.	A	.	.	LowGQX	END=167742609	GT	./.
chr1	167745299	.	A	.	.	LowGQX	END=167745405	GT	./.
chr1	167757055	.	A	.	.	LowGQX	END=167757160	GT	./.
chr1	167778864	.	T	.	.	PASS	END=167778874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	167778875	.	A	.	.	PASS	END=167778920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	167778921	.	A	.	.	PASS	END=167778933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	167778934	.	G	.	.	PASS	END=167779029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	167779030	.	T	.	.	PASS	END=167779076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	167779077	.	C	.	.	PASS	END=167779084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	167779085	.	A	.	.	PASS	END=167779127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	167779911	.	C	.	.	PASS	END=167779927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	167779928	.	T	.	.	PASS	END=167779971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	167779972	.	T	.	.	PASS	END=167780027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	167780028	.	G	.	.	PASS	END=167780074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	167780075	.	C	.	.	PASS	END=167780115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	167780116	.	C	.	.	PASS	END=167780173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	167780174	.	G	.	.	PASS	END=167780182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	167780183	.	A	.	.	PASS	END=167780201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	167787259	.	G	.	.	LowGQX	END=167787260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	167787261	.	G	.	.	LowGQX	END=167787266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	167787267	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	167787268	.	T	.	.	LowGQX	END=167787275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	167787276	.	T	.	.	PASS	END=167787279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	167787280	.	T	.	.	PASS	END=167787296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	167787297	.	G	.	.	PASS	END=167787304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	167787305	.	C	.	.	PASS	END=167787306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	167787307	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:30:60
chr1	167787308	.	A	.	.	PASS	END=167787312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	167787313	.	G	.	.	PASS	END=167787340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:96:60
chr1	167787341	.	T	.	.	PASS	END=167787372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	167787373	.	G	.	.	PASS	END=167787389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	167787390	.	C	.	.	PASS	END=167787408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	167787409	.	G	.	.	PASS	END=167787539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	167787540	.	T	.	.	PASS	END=167787553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	167787554	.	T	.	.	PASS	END=167787556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	167787576	.	T	.	.	PASS	END=167787613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	167787614	.	A	.	.	PASS	END=167787622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr1	167787623	.	T	.	.	PASS	END=167787627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	167787628	.	T	.	.	PASS	END=167787630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	167787631	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:21:60
chr1	167787632	.	T	.	.	PASS	END=167787633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr1	167787634	.	C	.	.	PASS	END=167787640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:60
chr1	167787641	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:16:60
chr1	167787642	.	T	.	.	PASS	END=167787647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	167787648	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	167787649	.	C	.	.	LowGQX	END=167787653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr1	167787654	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	167787655	.	A	.	.	LowGQX	END=167787658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	167787659	.	G	.	.	LowGQX	END=167787675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	167791211	.	G	.	.	PASS	END=167791246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	167791247	.	G	.	.	PASS	END=167791267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	167791268	.	G	.	.	PASS	END=167791401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	167791402	.	A	.	.	PASS	END=167791426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	167791427	.	C	.	.	PASS	END=167791430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	167792195	.	G	.	.	PASS	END=167792247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	167792248	.	G	.	.	PASS	END=167792330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	167792331	.	C	.	.	PASS	END=167792350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	167792351	.	A	.	.	PASS	END=167792388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	167792389	.	T	.	.	PASS	END=167792398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	167792399	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:66:60
chr1	167792400	.	G	.	.	PASS	END=167792412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	167793663	.	A	.	.	PASS	END=167793669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	167793670	.	C	T	1812.84	PASS	BaseQRankSum=4.023;DP=143;Dels=0.00;FS=1.412;HRun=0;HaplotypeScore=17.4025;MQ=60;MQ0=0;MQRankSum=-0.818;QD=12.68;ReadPosRankSum=1.544;SB=-852.67	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:71,72:143:99:1843,0,1639:60:99:0.503
chr1	167793671	.	G	.	.	PASS	END=167793765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	167793766	.	G	.	.	PASS	END=167793810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	167793811	.	C	.	.	PASS	END=167793848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	167793849	.	C	.	.	PASS	END=167793886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	167793887	.	A	.	.	PASS	END=167793915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	167793916	.	C	.	.	PASS	END=167793975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	167793976	.	C	.	.	PASS	END=167794036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	167794037	.	A	.	.	PASS	END=167794063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	167794064	.	T	.	.	PASS	END=167794081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	167794082	.	A	.	.	PASS	END=167794092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	167794093	.	T	.	.	PASS	END=167794118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	167794119	.	T	.	.	PASS	END=167794129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr1	167794130	.	G	A	604.14	PASS	BaseQRankSum=1.070;DP=49;Dels=0.00;FS=1.595;HRun=0;HaplotypeScore=7.6281;MQ=60;MQ0=0;MQRankSum=2.250;QD=12.33;ReadPosRankSum=1.290;SB=-122.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:25,24:49:99:634,0,673:60:99:0.490
chr1	167794131	.	C	.	.	PASS	END=167794144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	167798454	.	T	.	.	PASS	END=167798556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	167798557	.	A	.	.	PASS	END=167798681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	167798682	.	A	.	.	PASS	END=167798712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	167802174	.	T	.	.	PASS	END=167802186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	167802187	.	A	.	.	PASS	END=167802189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	167802190	.	C	.	.	PASS	END=167802195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	167802196	.	A	.	.	PASS	END=167802203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr1	167802204	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:55:60
chr1	167802205	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:99:60
chr1	167802206	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:66:60
chr1	167802207	.	C	.	.	PASS	END=167802208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	167802209	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:66:60
chr1	167802210	.	A	.	.	PASS	END=167802230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	167802231	.	G	.	.	PASS	END=167802238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:96:60
chr1	167802239	.	C	.	.	PASS	END=167802260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	167802261	.	T	.	.	PASS	END=167802355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	167802356	.	C	.	.	PASS	END=167802381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	167802382	.	G	.	.	PASS	END=167802390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	167802391	.	T	.	.	PASS	END=167802406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	167802407	.	G	.	.	PASS	END=167802411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	167802412	.	T	.	.	PASS	END=167802427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	167802428	.	A	.	.	PASS	END=167802439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	167802440	.	C	.	.	PASS	END=167802451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	167803157	.	A	.	.	PASS	END=167803167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	167803168	.	A	.	.	PASS	END=167803189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	167803190	.	T	.	.	PASS	END=167803239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	167803240	.	C	.	.	PASS	END=167803310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	167803311	.	T	.	.	PASS	END=167803323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	167803324	.	A	.	.	PASS	END=167803365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	167803366	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:90:60
chr1	167805496	.	G	.	.	PASS	END=167805509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	167805510	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr1	167805511	.	T	.	.	PASS	END=167805524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	167805525	.	G	.	.	PASS	END=167805542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	167805543	.	T	.	.	PASS	END=167805584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	167805585	.	T	.	.	PASS	END=167805614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	167805615	.	T	.	.	PASS	END=167805666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	167805667	.	G	.	.	PASS	END=167805748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	167805749	.	T	.	.	PASS	END=167805790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	167805791	.	A	.	.	PASS	END=167805815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	167805816	.	A	.	.	PASS	END=167805825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	167805826	.	T	.	.	PASS	END=167805829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	167806248	.	G	.	.	PASS	END=167806252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	167806253	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	167806254	.	C	.	.	PASS	END=167806265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	167806266	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	167806267	.	A	.	.	PASS	END=167806301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	167806302	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:3:60
chr1	167806303	.	A	.	.	PASS	END=167806305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	167806306	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	167806307	.	G	.	.	PASS	END=167806310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	167806311	.	G	.	.	PASS	END=167806312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr1	167806313	.	T	.	.	PASS	END=167806314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	167806315	.	A	.	.	PASS	END=167806320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	167806321	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr1	167806322	.	C	.	.	PASS	END=167806328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	167806329	.	G	.	.	PASS	END=167806344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	167806345	.	A	.	.	PASS	END=167806347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	167806436	.	T	.	.	PASS	END=167806460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	167806461	.	T	.	.	PASS	END=167806579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	167806580	.	T	.	.	PASS	END=167806604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	167806605	.	A	.	.	PASS	END=167806607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	167814723	.	C	.	.	PASS	END=167814838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	167814839	.	T	.	.	PASS	END=167814853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	167814854	.	T	.	.	PASS	END=167814874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	167814875	.	A	.	.	PASS	END=167814900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	167814901	.	G	.	.	PASS	END=167814947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	167814948	.	C	.	.	PASS	END=167815021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	167815022	.	C	.	.	PASS	END=167815050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	167815051	.	C	.	.	PASS	END=167815097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	167815098	.	A	.	.	PASS	END=167815142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	167815172	.	G	.	.	PASS	END=167815209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	167815210	.	A	.	.	PASS	END=167815245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	167815246	.	G	.	.	PASS	END=167815268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	167815269	.	A	.	.	PASS	END=167815368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	167815369	.	A	.	.	PASS	END=167815404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	167815405	.	A	.	.	PASS	END=167815426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	167815427	.	G	.	.	PASS	END=167815447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	167815448	.	T	.	.	PASS	END=167815466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	167815467	.	A	.	.	PASS	END=167815491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	167815492	.	A	.	.	PASS	END=167815504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	167815505	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:21:60
chr1	167815506	.	A	.	.	PASS	END=167815516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	167815517	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chr1	167815518	.	A	.	.	PASS	END=167815529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	167815530	.	A	.	.	PASS	END=167815534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	167815535	.	T	.	.	PASS	END=167815548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	167815549	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:21:60
chr1	167815550	.	T	.	.	PASS	END=167815552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	167817548	.	A	.	.	PASS	END=167817563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	167817564	.	G	.	.	PASS	END=167817584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	167817585	.	C	.	.	PASS	END=167817638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	167817639	.	A	G	1585.58	PASS	BaseQRankSum=1.557;DP=153;Dels=0.00;FS=2.130;HRun=0;HaplotypeScore=9.5742;MQ=60;MQ0=0;MQRankSum=0.958;QD=10.36;ReadPosRankSum=0.752;SB=-763.33	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:86,67:153:99:1616,0,1831:60:99:0.438
chr1	167817640	.	C	.	.	PASS	END=167817706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	167817707	.	C	.	.	PASS	END=167817729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	167817730	.	A	.	.	PASS	END=167817734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	167817735	.	G	.	.	PASS	END=167817760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr1	167817761	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:67:60
chr1	167817762	.	A	.	.	PASS	END=167817778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	167823540	.	A	.	.	PASS	END=167823546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	167823547	.	T	.	.	PASS	END=167823558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	167823559	.	G	.	.	PASS	END=167823570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	167823571	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:51:60
chr1	167823572	.	C	.	.	PASS	END=167823577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	167823578	.	C	.	.	PASS	END=167823596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	167823597	.	G	.	.	PASS	END=167823709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr1	167823710	.	C	.	.	PASS	END=167823729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	167823730	.	G	.	.	PASS	END=167823742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	167823743	.	G	.	.	PASS	END=167823751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	167823752	.	T	.	.	PASS	END=167823753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	167823754	.	T	.	.	PASS	END=167823778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	167825352	.	G	.	.	LowGQX	END=167825356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	167825357	.	A	.	.	LowGQX	END=167825359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	167825360	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	167825361	.	T	.	.	LowGQX	END=167825362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	167825363	.	T	.	.	PASS	END=167825365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	167825366	.	A	.	.	LowGQX	END=167825369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	167825370	.	G	.	.	PASS	END=167825371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	167825372	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	167825373	.	G	.	.	PASS	END=167825374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	167825375	.	G	.	.	LowGQX	END=167825376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	167825377	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	167825378	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	167825379	.	T	.	.	PASS	END=167825381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	167825382	.	G	.	.	LowGQX	END=167825392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	167825393	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	167825394	.	G	.	.	LowGQX	END=167825395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	167825396	.	T	.	.	PASS	END=167825397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	167825398	.	C	.	.	LowGQX	END=167825399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	167825400	.	T	.	.	PASS	END=167825401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	167825402	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	167825403	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	167825404	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	167825405	.	G	.	.	PASS	END=167825407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	167825408	.	C	.	.	LowGQX	END=167825409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	167825410	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:36:60
chr1	167825411	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	167825412	.	T	.	.	PASS	END=167825417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	167825418	.	G	.	.	PASS	END=167825420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	167825421	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	167825422	.	T	.	.	PASS	END=167825430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	167825431	.	C	.	.	PASS	END=167825436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	167825437	.	G	.	.	PASS	END=167825447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	167825448	.	A	.	.	PASS	END=167825467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	167825468	.	A	.	.	PASS	END=167825484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	167825485	.	T	C	525.48	PASS	BaseQRankSum=-1.868;DP=52;Dels=0.00;FS=1.248;HRun=0;HaplotypeScore=7.6803;MQ=60;MQ0=0;MQRankSum=-0.769;QD=10.11;ReadPosRankSum=-0.641;SB=-157.46	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:27,25:52:99:555,0,761:60:99:0.481
chr1	167825486	.	G	.	.	PASS	END=167825531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	167825532	.	G	.	.	PASS	END=167825661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	167825662	.	T	.	.	PASS	END=167825694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	167825695	.	A	.	.	PASS	END=167825715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	167825716	.	G	.	.	PASS	END=167825717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:87:60
chr1	167825718	.	C	T	462.03	PASS	BaseQRankSum=0.592;DP=29;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=0.724;QD=15.93;ReadPosRankSum=-0.504;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,16:29:99:492,0,384:60:99:0.552
chr1	167825719	.	G	.	.	PASS	END=167825728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	167828994	.	T	.	.	PASS	END=167829034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	167829035	.	A	.	.	PASS	END=167829115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	167829116	.	C	.	.	PASS	END=167829162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	167829163	.	G	.	.	PASS	END=167829182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	167830058	.	G	.	.	PASS	END=167830074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	167830075	.	C	.	.	PASS	END=167830100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	167830101	.	C	.	.	PASS	END=167830125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	167830126	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:70:60
chr1	167830127	.	A	.	.	PASS	END=167830144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	167830145	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:76:60
chr1	167830146	.	T	.	.	PASS	END=167830219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:78:60
chr1	167830220	.	G	.	.	PASS	END=167830352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	167839444	.	T	.	.	PASS	END=167839460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	167839461	.	G	.	.	PASS	END=167839492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	167839493	.	A	.	.	PASS	END=167839547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	167839548	.	T	.	.	PASS	END=167839577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	167839578	.	G	A	900.43	PASS	BaseQRankSum=2.229;DP=94;Dels=0.00;FS=2.900;HRun=2;HaplotypeScore=9.5196;MQ=60;MQ0=0;MQRankSum=0.233;QD=9.58;ReadPosRankSum=0.493;SB=-523.38	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:54,40:94:99:930,0,1395:60:99:0.426
chr1	167839579	.	A	.	.	PASS	END=167839616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	167839617	.	A	.	.	PASS	END=167839643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	167839644	.	A	.	.	PASS	END=167839645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	167839646	.	G	.	.	PASS	END=167839675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	167839676	.	A	.	.	PASS	END=167839696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	167839697	.	G	.	.	PASS	END=167839699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	167844317	.	A	.	.	PASS	END=167844357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	167844358	.	C	.	.	PASS	END=167844412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	167844413	.	A	.	.	PASS	END=167844469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	167844470	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:60:60
chr1	167844471	.	A	.	.	PASS	END=167844475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	167847633	.	T	.	.	PASS	END=167847636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	167847637	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:44:60
chr1	167847638	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:33:60
chr1	167847639	.	G	.	.	PASS	END=167847648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	167847649	.	T	.	.	PASS	END=167847668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	167847669	.	A	.	.	PASS	END=167847671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	167847672	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:50:60
chr1	167847673	.	T	.	.	PASS	END=167847679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	167847680	.	T	.	.	PASS	END=167847682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	167847683	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:63:60
chr1	167847684	.	A	.	.	PASS	END=167847687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	167847688	.	T	.	.	PASS	END=167847726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	167847727	.	C	.	.	PASS	END=167847814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	167847815	.	C	.	.	PASS	END=167847838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:91:60
chr1	167847839	.	C	.	.	PASS	END=167847867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	167847868	.	C	.	.	PASS	END=167847892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	167847893	.	G	.	.	PASS	END=167847906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	167847907	.	A	.	.	PASS	END=167847912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	167847913	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:45:60
chr1	167847914	.	A	.	.	PASS	END=167847924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	167849302	.	A	.	.	PASS	END=167849307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr1	167849308	.	C	.	.	PASS	END=167849317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:57:60
chr1	167849318	.	A	G	387.21	PASS	BaseQRankSum=-2.532;DP=33;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=0.528;QD=11.73;ReadPosRankSum=0.820;SB=-168.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:14,19:33:99:417,0,338:60:99:0.576
chr1	167849319	.	G	.	.	PASS	END=167849349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	167849350	.	C	.	.	PASS	END=167849354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	167849355	.	G	.	.	PASS	END=167849374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	167849375	.	G	.	.	PASS	END=167849413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	167849414	.	A	G	881.24	PASS	BaseQRankSum=2.130;DP=69;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=10.4161;MQ=60;MQ0=0;MQRankSum=0.726;QD=12.77;ReadPosRankSum=0.174;SB=-353.34	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,34:69:99:911,0,730:60:99:0.493
chr1	167849415	.	C	.	.	PASS	END=167849480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	167849678	.	A	.	.	PASS	END=167849702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	167849703	.	T	.	.	PASS	END=167849758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	167849759	.	A	.	.	PASS	END=167849820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	167849821	.	G	.	.	PASS	END=167849853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	167849854	.	G	.	.	PASS	END=167849865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	167849866	.	G	.	.	PASS	END=167849884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	167849885	.	A	.	.	PASS	END=167849890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	167849891	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:61:60
chr1	167849892	.	T	.	.	PASS	END=167849898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	167852624	.	A	.	.	PASS	END=167852627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	167852628	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:15:60
chr1	167852629	.	T	.	.	PASS	END=167852648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	167852649	.	G	.	.	PASS	END=167852656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	167852657	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:36:60
chr1	167852658	.	C	.	.	PASS	END=167852667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:78:60
chr1	167852668	.	C	.	.	PASS	END=167852673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	167852674	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:37:60
chr1	167852675	.	C	.	.	PASS	END=167852679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	167852680	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:66:60
chr1	167852681	.	A	.	.	PASS	END=167852727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	167852728	.	A	.	.	PASS	END=167852736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	167852737	.	G	.	.	PASS	END=167852775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:93:60
chr1	167852776	.	C	.	.	PASS	END=167852862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	167852863	.	C	.	.	PASS	END=167852887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	167852888	.	T	.	.	PASS	END=167852899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:84:60
chr1	167852900	.	C	.	.	PASS	END=167852904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	167852905	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:75:60
chr1	167852906	.	A	.	.	PASS	END=167852909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	167852910	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:70:60
chr1	167852911	.	A	.	.	PASS	END=167852917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	167863040	.	T	.	.	PASS	END=167863046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	167863047	.	A	.	.	PASS	END=167863059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:80:60
chr1	167863060	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr1	167863061	.	C	.	.	PASS	END=167863091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	167863092	.	T	.	.	PASS	END=167863113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	167863114	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:73:75:60
chr1	167863115	.	A	.	.	PASS	END=167863176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	167863177	.	G	.	.	PASS	END=167863188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	167863189	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:64:60
chr1	167863190	.	A	.	.	PASS	END=167863207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	167863208	.	C	.	.	PASS	END=167863222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	167863223	.	G	.	.	PASS	END=167863225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	167863226	.	T	.	.	PASS	END=167863230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	167865782	.	C	.	.	PASS	END=167865841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	167865842	.	C	.	.	PASS	END=167865924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	167865925	.	T	.	.	PASS	END=167865963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	167865964	.	C	.	.	PASS	END=167865980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	167868610	.	C	.	.	PASS	END=167868632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	167868633	.	T	.	.	PASS	END=167868661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	167868662	.	T	.	.	PASS	END=167868724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	167868725	.	C	.	.	PASS	END=167868792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	167868793	.	C	.	.	PASS	END=167868855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	167868856	.	A	.	.	PASS	END=167868886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	167868887	.	A	.	.	PASS	END=167868908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	167868909	.	A	.	.	PASS	END=167868917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	167870849	.	T	.	.	PASS	END=167870854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	167870855	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:39:60
chr1	167870856	.	C	.	.	PASS	END=167870874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	167870875	.	G	.	.	PASS	END=167870894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	167870895	.	C	.	.	PASS	END=167870921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:88:60
chr1	167870922	.	G	.	.	PASS	END=167870970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	167870971	.	C	.	.	PASS	END=167871025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	167871026	.	G	.	.	PASS	END=167871046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	167871047	.	C	.	.	PASS	END=167871075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:81:60
chr1	167871076	.	C	.	.	PASS	END=167871101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:59
chr1	167871203	.	G	.	.	PASS	END=167871233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	167871234	.	A	.	.	PASS	END=167871296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	167871297	.	G	.	140.85	PASS	DP=83;MQ=61;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:65:83:99:61:99
chr1	167871297	.	GA	G	455.09	PASS	BaseQRankSum=-2.218;DP=83;FS=3.207;HRun=14;HaplotypeScore=325.5023;MQ=61;MQ0=0;MQRankSum=0.556;QD=5.48;ReadPosRankSum=-1.382;SB=-219.49	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:49,27:83:99:494,0,735:61:99:0.355
chr1	167871298	.	A	.	138.34	PASS	DP=86;MQ=61;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:56:56:99:61:99
chr1	167871299	.	A	.	.	PASS	END=167871339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:61
chr1	167871340	.	A	.	.	PASS	END=167871343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:61
chr1	167873074	.	A	.	.	PASS	END=167873125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	167873126	.	C	.	.	PASS	END=167873183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	167873184	.	T	.	.	PASS	END=167873195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	167873196	.	G	.	.	PASS	END=167873207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	167873208	.	T	.	.	PASS	END=167873220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	167873221	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:45:60
chr1	167873222	.	A	.	.	PASS	END=167873251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	167873252	.	T	.	.	PASS	END=167873260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	167873261	.	T	.	.	PASS	END=167873268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	167873269	.	G	.	.	PASS	END=167873277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	167873278	.	C	.	.	PASS	END=167873280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	167874180	.	A	.	.	PASS	END=167874220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	167874221	.	T	.	.	PASS	END=167874306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	167874307	.	A	.	.	PASS	END=167874335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	167874336	.	T	.	.	PASS	END=167874352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	167874353	.	T	.	.	PASS	END=167874371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	167874372	.	T	.	.	PASS	END=167874375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	167874376	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:45:60
chr1	167874377	.	A	.	.	PASS	END=167874381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	167874382	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:30:60
chr1	167874383	.	A	.	.	PASS	END=167874389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	167874390	.	A	.	.	PASS	END=167874397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	167874398	.	G	.	.	PASS	END=167874407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	167874408	.	T	.	.	PASS	END=167874426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	167874427	.	A	.	.	PASS	END=167874429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	167887530	.	A	.	.	LowGQX	END=167887629	GT	./.
chr1	167889215	.	A	.	.	LowGQX	END=167889330	GT	./.
chr1	167889778	.	A	.	.	LowGQX	END=167889866	GT	./.
chr1	167889867	.	C	.	.	LowGQX	END=167889877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	167893669	.	T	.	.	LowGQX	END=167893777	GT	./.
chr1	167904969	.	A	.	.	LowGQX	END=167905037	GT	./.
chr1	167905038	.	G	.	.	LowGQX	END=167905062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	167905063	.	G	T	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	167905064	.	C	.	.	LowGQX	END=167905081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	167906089	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906090	.	C	.	.	LowGQX	END=167906091	GT	./.
chr1	167906092	.	C	.	.	LowGQX	END=167906093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906094	.	C	.	.	LowGQX	.	GT	./.
chr1	167906095	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906096	.	C	.	.	LowGQX	END=167906097	GT	./.
chr1	167906098	.	C	.	.	LowGQX	END=167906101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906102	.	C	.	.	LowGQX	.	GT	./.
chr1	167906103	.	C	.	.	LowGQX	END=167906105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906106	.	C	.	.	LowGQX	.	GT	./.
chr1	167906107	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906108	.	C	.	.	LowGQX	END=167906109	GT	./.
chr1	167906110	.	C	.	.	LowGQX	END=167906111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906112	.	C	.	.	LowGQX	END=167906113	GT	./.
chr1	167906114	.	C	.	.	LowGQX	END=167906116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906117	.	T	.	.	LowGQX	.	GT	./.
chr1	167906118	.	G	.	.	LowGQX	END=167906119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906120	.	T	.	.	LowGQX	.	GT	./.
chr1	167906121	.	C	.	.	LowGQX	END=167906122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906123	.	C	.	.	LowGQX	END=167906124	GT	./.
chr1	167906125	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906126	.	C	.	.	LowGQX	.	GT	./.
chr1	167906127	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906128	.	C	.	.	LowGQX	END=167906134	GT	./.
chr1	167906135	.	G	.	.	LowGQX	END=167906137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906138	.	T	.	.	LowGQX	END=167906140	GT	./.
chr1	167906141	.	G	.	.	LowGQX	END=167906143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906144	.	A	.	.	LowGQX	.	GT	./.
chr1	167906145	.	G	.	.	LowGQX	END=167906147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906148	.	C	.	.	LowGQX	END=167906150	GT	./.
chr1	167906151	.	T	.	.	LowGQX	END=167906155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906156	.	C	.	.	LowGQX	.	GT	./.
chr1	167906157	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906158	.	G	.	.	LowGQX	.	GT	./.
chr1	167906159	.	G	.	.	LowGQX	END=167906162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906163	.	G	.	.	LowGQX	END=167906164	GT	./.
chr1	167906165	.	T	.	.	LowGQX	END=167906178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906179	.	G	.	.	LowGQX	.	GT	./.
chr1	167906180	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906181	.	T	.	.	LowGQX	.	GT	./.
chr1	167906182	.	G	.	.	LowGQX	END=167906187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167906188	.	C	.	.	LowGQX	END=167906248	GT	./.
chr1	167921019	.	G	.	.	LowGQX	END=167921087	GT	./.
chr1	167921088	.	C	.	.	LowGQX	END=167921118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167935805	.	A	.	.	LowGQX	END=167935953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167935954	.	A	.	.	LowGQX	END=167935963	GT	./.
chr1	167944066	.	A	.	.	LowGQX	END=167944255	GT	./.
chr1	167956731	.	A	.	.	LowGQX	END=167956848	GT	./.
chr1	167960440	.	A	.	.	LowGQX	END=167960579	GT	./.
chr1	167962462	.	A	.	.	LowGQX	END=167962680	GT	./.
chr1	167971717	.	T	.	.	LowGQX	END=167971816	GT	./.
chr1	167973106	.	A	.	.	LowGQX	END=167973229	GT	./.
chr1	167973769	.	A	.	.	LowGQX	END=167973868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167973869	.	G	.	.	LowGQX	.	GT	./.
chr1	167973870	.	A	.	.	LowGQX	END=167973915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167973916	.	T	.	.	LowGQX	.	GT	./.
chr1	167973917	.	C	.	.	LowGQX	END=167973976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	167973977	.	A	.	.	LowGQX	END=167974033	GT	./.
chr1	167985018	.	G	.	.	LowGQX	END=167985189	GT	./.
chr1	167988752	.	T	.	.	LowGQX	END=167988851	GT	./.
chr1	167992206	.	A	.	.	LowGQX	END=167992305	GT	./.
chr1	168007557	.	T	.	.	LowGQX	END=168007728	GT	./.
chr1	168012261	.	A	.	.	LowGQX	END=168012380	GT	./.
chr1	168013817	.	T	.	.	LowGQX	END=168013916	GT	./.
chr1	168014136	.	A	.	.	LowGQX	END=168014467	GT	./.
chr1	168020101	.	G	.	.	LowGQX	END=168020200	GT	./.
chr1	168032857	.	A	.	.	LowGQX	END=168033036	GT	./.
chr1	168034826	.	A	.	.	LowGQX	END=168034986	GT	./.
chr1	168035610	.	T	.	.	LowGQX	END=168035709	GT	./.
chr1	168037543	.	A	.	.	LowGQX	END=168037703	GT	./.
chr1	168044537	.	G	.	.	LowGQX	END=168044691	GT	./.
chr1	168054034	.	C	.	.	LowGQX	END=168054457	GT	./.
chr1	168054767	.	C	.	.	LowGQX	END=168054893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168054894	.	C	.	.	LowGQX	END=168055036	GT	./.
chr1	168056771	.	A	.	.	LowGQX	END=168056944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168059782	.	T	.	.	LowGQX	END=168059817	GT	./.
chr1	168059818	.	G	.	.	LowGQX	END=168059842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168059843	.	C	.	.	LowGQX	.	GT	./.
chr1	168059844	.	T	.	.	LowGQX	END=168059845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168059846	.	C	.	.	LowGQX	.	GT	./.
chr1	168059847	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168059848	.	G	.	.	LowGQX	.	GT	./.
chr1	168059849	.	T	.	.	LowGQX	END=168059854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168059855	.	A	.	.	LowGQX	.	GT	./.
chr1	168059856	.	G	.	.	LowGQX	END=168059864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168059865	.	C	.	.	LowGQX	.	GT	./.
chr1	168059866	.	A	.	.	LowGQX	END=168059871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168059872	.	C	.	.	LowGQX	END=168059873	GT	./.
chr1	168059874	.	T	.	.	LowGQX	END=168059875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168059876	.	A	.	.	LowGQX	.	GT	./.
chr1	168059877	.	G	.	.	LowGQX	END=168059880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168059881	.	A	.	.	LowGQX	.	GT	./.
chr1	168059882	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168059883	.	T	.	.	LowGQX	END=168059885	GT	./.
chr1	168059886	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168059887	.	G	.	.	LowGQX	.	GT	./.
chr1	168059888	.	T	.	.	LowGQX	END=168059889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168059890	.	T	.	.	LowGQX	.	GT	./.
chr1	168059891	.	G	.	.	LowGQX	END=168059894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168059895	.	A	.	.	LowGQX	.	GT	./.
chr1	168059896	.	C	.	.	LowGQX	END=168059897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168059898	.	G	.	.	LowGQX	END=168059899	GT	./.
chr1	168059900	.	C	.	.	LowGQX	END=168059902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168059903	.	A	.	.	LowGQX	.	GT	./.
chr1	168059904	.	G	.	.	LowGQX	END=168059905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168059906	.	T	.	.	LowGQX	END=168059908	GT	./.
chr1	168065744	.	A	.	.	LowGQX	END=168066441	GT	./.
chr1	168066442	.	A	.	.	LowGQX	END=168066472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168073713	.	A	.	.	LowGQX	END=168073722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	168073723	.	G	A	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	168073724	.	G	.	.	LowGQX	END=168073733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	168073734	.	C	.	.	LowGQX	END=168074132	GT	./.
chr1	168104102	.	C	.	.	LowGQX	END=168104201	GT	./.
chr1	168105494	.	C	.	.	LowGQX	END=168105634	GT	./.
chr1	168106594	.	C	.	.	LowGQX	END=168106693	GT	./.
chr1	168148314	.	C	.	.	LowGQX	END=168148421	GT	./.
chr1	168153138	.	A	.	.	LowGQX	END=168153139	GT	./.
chr1	168153140	.	A	.	.	LowGQX	END=168153176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168153177	.	A	.	.	LowGQX	.	GT	./.
chr1	168153178	.	T	.	.	LowGQX	END=168153300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168153301	.	A	.	.	LowGQX	.	GT	./.
chr1	168153302	.	A	.	.	LowGQX	END=168153321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168153965	.	T	.	.	LowGQX	END=168154118	GT	./.
chr1	168160565	.	C	.	.	LowGQX	END=168160740	GT	./.
chr1	168161407	.	G	.	.	LowGQX	END=168161414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168161415	.	T	.	.	LowGQX	END=168161416	GT	./.
chr1	168161417	.	C	.	.	LowGQX	END=168161430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168161431	.	C	.	.	LowGQX	END=168161506	GT	./.
chr1	168165783	.	A	.	.	LowGQX	END=168165882	GT	./.
chr1	168168085	.	C	.	.	LowGQX	END=168168102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168168103	.	A	.	.	LowGQX	END=168168238	GT	./.
chr1	168169139	.	A	.	.	LowGQX	END=168169244	GT	./.
chr1	168169245	.	T	.	.	LowGQX	END=168169246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168169247	.	A	.	.	LowGQX	.	GT	./.
chr1	168169248	.	C	.	.	LowGQX	END=168169286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168195300	.	G	.	.	LowGQX	END=168195399	GT	./.
chr1	168200746	.	T	.	.	LowGQX	END=168200775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168200776	.	T	.	.	LowGQX	.	GT	./.
chr1	168200777	.	G	.	.	LowGQX	END=168200779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168200780	.	G	.	.	LowGQX	.	GT	./.
chr1	168200781	.	T	.	.	LowGQX	END=168200836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168200837	.	T	.	.	LowGQX	END=168200845	GT	./.
chr1	168201065	.	A	.	.	LowGQX	END=168201164	GT	./.
chr1	168204330	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168204331	.	C	.	.	LowGQX	.	GT	./.
chr1	168204332	.	C	.	.	LowGQX	END=168204356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168204357	.	A	.	.	LowGQX	.	GT	./.
chr1	168204358	.	C	.	.	LowGQX	END=168204361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168204362	.	T	.	.	LowGQX	.	GT	./.
chr1	168204363	.	G	.	.	LowGQX	END=168204372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168204373	.	A	.	.	LowGQX	.	GT	./.
chr1	168204374	.	A	.	.	LowGQX	END=168204387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168204388	.	C	.	.	LowGQX	.	GT	./.
chr1	168204389	.	C	.	.	LowGQX	END=168204395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168204396	.	T	.	.	LowGQX	.	GT	./.
chr1	168204397	.	T	.	.	LowGQX	END=168204422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168204423	.	A	.	.	LowGQX	.	GT	./.
chr1	168204424	.	A	.	.	LowGQX	END=168204425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168204426	.	G	.	.	LowGQX	.	GT	./.
chr1	168204427	.	T	.	.	LowGQX	END=168204429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168205795	.	G	.	.	LowGQX	END=168205894	GT	./.
chr1	168205930	.	C	.	.	LowGQX	END=168205950	GT	./.
chr1	168205951	.	G	.	.	LowGQX	END=168206029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168208334	.	T	.	.	LowGQX	END=168208433	GT	./.
chr1	168211709	.	C	.	.	LowGQX	END=168211808	GT	./.
chr1	168215923	.	T	.	.	LowGQX	END=168216035	GT	./.
chr1	168216036	.	C	.	.	LowGQX	END=168216092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168216093	.	A	.	.	LowGQX	.	GT	./.
chr1	168216094	.	G	.	.	LowGQX	END=168216283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	168250278	.	T	.	.	PASS	END=168250299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	168250300	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:63:60
chr1	168250301	.	G	.	.	PASS	END=168250324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	168250325	.	G	.	.	PASS	END=168250345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	168250346	.	G	.	.	PASS	END=168250389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	168250390	.	A	.	.	PASS	END=168250431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	168250432	.	A	.	.	PASS	END=168250535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	168250536	.	G	.	.	PASS	END=168250554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	168250555	.	T	.	.	PASS	END=168250578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	168250579	.	A	.	.	PASS	END=168250582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	168260347	.	A	.	.	PASS	END=168260363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	168260364	.	C	.	.	PASS	END=168260378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	168260379	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:29:60
chr1	168260380	.	T	.	.	PASS	END=168260384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	168260385	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:21:60
chr1	168260386	.	C	.	.	PASS	END=168260411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	168260412	.	T	.	.	PASS	END=168260420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	168260421	.	T	.	.	PASS	END=168260439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	168260440	.	C	.	.	PASS	END=168260461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	168260462	.	C	.	.	PASS	END=168260519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	168260520	.	T	.	.	PASS	END=168260585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	168260586	.	T	.	.	PASS	END=168260606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	168260607	.	C	.	.	PASS	END=168260642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:87:60
chr1	168260643	.	A	.	.	PASS	END=168260655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	168260656	.	C	.	.	PASS	END=168260659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	168260660	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:51:60
chr1	168260661	.	A	.	.	PASS	END=168260670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	168260671	.	G	.	.	PASS	END=168260695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	168260696	.	T	.	.	PASS	END=168260702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	168260703	.	T	.	.	PASS	END=168260712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	168260713	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:39:60
chr1	168262331	.	C	.	.	PASS	END=168262381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	168262382	.	A	.	.	PASS	END=168262436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	168262437	.	G	.	.	PASS	END=168262462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	168262463	.	T	.	.	PASS	END=168262497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	168262498	.	T	.	.	PASS	END=168262525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:59
chr1	168262526	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:99:59
chr1	168262527	.	G	T	341.04	PASS	BaseQRankSum=-0.365;DP=51;Dels=0.00;FS=1.389;HRun=1;HaplotypeScore=17.2932;MQ=59;MQ0=0;MQRankSum=-0.108;QD=6.69;ReadPosRankSum=0.483;SB=-146.33	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,18:51:99:371,0,855:59:99:0.353
chr1	168262528	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:63:59
chr1	168262529	.	G	.	.	PASS	END=168262533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:59
chr1	168262534	.	T	.	.	PASS	END=168262539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:59
chr1	168262540	.	T	.	.	PASS	END=168262545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:59
chr1	168262546	.	T	.	.	PASS	END=168262547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:59
chr1	168262548	.	T	.	.	LowGQX	END=168262551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:59
chr1	168262552	.	T	.	.	LowGQX	END=168262553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:58
chr1	168262554	.	T	.	.	LowGQX	END=168262557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:58
chr1	168262558	.	T	.	.	LowGQX	END=168262559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	168262560	.	T	.	.	LowGQX	END=168262563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	168262564	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	168262565	.	A	.	.	LowGQX	END=168262567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	168266862	.	A	.	.	PASS	END=168266895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	168266896	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:33:60
chr1	168266897	.	A	.	.	PASS	END=168266909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	168266910	.	T	.	.	PASS	END=168266919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	168266920	.	T	.	.	PASS	END=168267066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:60
chr1	168267067	.	T	.	.	PASS	END=168267074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	168269601	.	T	.	.	PASS	END=168269716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	168269717	.	T	.	.	PASS	END=168269748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	168269749	.	G	.	.	PASS	END=168269764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	168269765	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:69:60
chr1	168269766	.	T	.	.	PASS	END=168269770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	168269771	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:70:60
chr1	168269772	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:99:60
chr1	168274195	.	G	.	.	PASS	END=168274200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	168274201	.	G	A	897.22	PASS	BaseQRankSum=1.248;DP=75;Dels=0.00;FS=1.999;HRun=1;HaplotypeScore=1.9993;MQ=60;MQ0=0;MQRankSum=-1.290;QD=11.96;ReadPosRankSum=0.388;SB=-501.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,40:75:99:927,0,910:60:99:0.533
chr1	168274202	.	A	.	.	PASS	END=168274221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	168274222	.	G	.	.	PASS	END=168274335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	168274336	.	C	.	.	PASS	END=168274361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	168274362	.	T	.	.	PASS	END=168274378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	168274379	.	A	.	.	PASS	END=168274397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	168274398	.	C	.	.	PASS	END=168274401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	168274402	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:33:27:60
chr1	168274403	.	T	.	.	PASS	END=168274410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	168274411	.	T	.	.	PASS	END=168274418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	168274419	.	A	.	.	PASS	END=168274426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	168274427	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:60
chr1	168274428	.	C	.	.	PASS	END=168274436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	168274437	.	C	.	.	PASS	END=168274447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	168274448	.	C	.	.	PASS	END=168274455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	168274456	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	168274457	.	C	.	.	PASS	END=168274461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	168274462	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	168274463	.	G	.	.	PASS	END=168274465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	168274466	.	T	.	.	LowGQX	END=168274472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	168274473	.	T	.	.	LowGQX	END=168274476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	168274477	.	G	.	39.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.02:60:9
chr1	168274478	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	168274479	.	G	.	.	LowGQX	END=168274480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	168274481	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	168274482	.	G	.	.	LowGQX	END=168274484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	168274485	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	168277929	.	C	.	.	PASS	END=168277979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	168277980	.	T	.	.	PASS	END=168278048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	168278049	.	C	.	.	PASS	END=168278059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	168278060	.	C	.	.	PASS	END=168278080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	168278081	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:75:60
chr1	168278082	.	C	.	.	PASS	END=168278096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	168278097	.	C	.	.	PASS	END=168278100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	168278101	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:39:60
chr1	168278102	.	A	.	.	PASS	END=168278108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	168278109	.	G	.	.	PASS	END=168278118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	168278119	.	A	.	.	PASS	END=168278123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	168278124	.	A	.	.	PASS	END=168278128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	168278129	.	C	.	.	PASS	END=168278136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	168278137	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	168278138	.	G	.	.	PASS	END=168278139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	168278140	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	168278141	.	C	.	.	PASS	END=168278149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	168278150	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	168278151	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	168278152	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	168278153	.	T	.	.	PASS	END=168278166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	168281895	.	T	.	.	PASS	END=168281925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	168281926	.	C	.	.	PASS	END=168281940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	168281941	.	T	.	.	PASS	END=168281961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	168281962	.	T	.	.	PASS	END=168281989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	168281990	.	C	.	.	PASS	END=168282108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	168282109	.	G	.	.	PASS	END=168282142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	168282143	.	C	.	.	PASS	END=168282163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	168282164	.	T	.	.	PASS	END=168282179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	168282180	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:73:60
chr1	168282181	.	G	.	.	PASS	END=168282202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	168282203	.	C	.	.	PASS	END=168282207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	168282208	.	G	.	.	PASS	END=168282217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	168282218	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:51:60
chr1	168282219	.	T	.	.	PASS	END=168282244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	168282245	.	G	.	.	PASS	END=168282265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	168282266	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:18:60
chr1	168282267	.	A	.	.	PASS	END=168282283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	168282284	.	T	.	.	PASS	END=168282291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	168344701	.	G	.	.	LowGQX	END=168344860	GT	./.
chr1	168510188	.	T	.	.	LowGQX	END=168510206	GT	./.
chr1	168510207	.	C	.	.	LowGQX	END=168510265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	168510266	.	G	.	.	LowGQX	.	GT	./.
chr1	168510267	.	T	.	.	LowGQX	END=168510281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	168510282	.	C	.	.	LowGQX	.	GT	./.
chr1	168510283	.	C	.	.	LowGQX	END=168510360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	168511229	.	A	.	.	LowGQX	END=168511347	GT	./.
chr1	168513123	.	A	.	.	LowGQX	END=168513222	GT	./.
chr1	168545857	.	G	.	.	LowGQX	END=168545956	GT	./.
chr1	168549299	.	A	.	.	LowGQX	END=168549417	GT	./.
chr1	168550288	.	A	.	.	LowGQX	END=168550340	GT	./.
chr1	168550341	.	G	.	.	LowGQX	END=168550460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	168665771	.	T	.	.	LowGQX	END=168665870	GT	./.
chr1	168670253	.	A	.	.	LowGQX	END=168670412	GT	./.
chr1	168683457	.	A	.	.	LowGQX	END=168683586	GT	./.
chr1	168698106	.	A	.	.	LowGQX	END=168698414	GT	./.
chr1	169076007	.	C	.	.	PASS	END=169076008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	169076009	.	G	.	.	PASS	END=169076023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	169076024	.	C	.	.	PASS	END=169076029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	169076030	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:60
chr1	169076031	.	C	.	.	PASS	END=169076038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	169076039	.	A	.	.	PASS	END=169076092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	169076093	.	A	.	.	PASS	END=169076136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:69:60
chr1	169076137	.	T	.	.	PASS	END=169076153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	169076154	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:48:60
chr1	169076155	.	G	.	.	PASS	END=169076163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr1	169076164	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:48:60
chr1	169076165	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:69:60
chr1	169076166	.	T	.	.	PASS	END=169076169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	169076170	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:39:60
chr1	169076171	.	A	.	.	PASS	END=169076176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	169076177	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:36:60
chr1	169076178	.	C	.	.	PASS	END=169076184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	169076185	.	T	.	.	PASS	END=169076203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	169076204	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:42:60
chr1	169076205	.	C	.	.	PASS	END=169076207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	169076208	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr1	169076209	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:57:60
chr1	169076210	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:18:60
chr1	169076211	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:57:60
chr1	169076212	.	G	C	231.05	PASS	BaseQRankSum=0.265;DP=20;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=6.7764;MQ=60;MQ0=0;MQRankSum=0.945;QD=11.55;ReadPosRankSum=0.416;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:10,10:20:99:261,0,290:60:99:0.500
chr1	169076213	.	G	.	.	PASS	END=169076217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	169076218	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:9:60
chr1	169076219	.	G	.	.	PASS	END=169076221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	169076222	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:60
chr1	169076223	.	C	.	.	PASS	END=169076225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	169079855	.	T	.	.	LowGQX	END=169079954	GT	./.
chr1	169080606	.	A	.	.	PASS	END=169080720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	169080721	.	C	.	.	PASS	END=169080738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	169094090	.	C	.	.	PASS	END=169094099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	169094100	.	T	A	3501.41	PASS	DP=121;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;QD=28.94;SB=-2176.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,121:121:99:3501,259,0:60:99:1.000
chr1	169094101	.	T	.	.	PASS	END=169094132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	169094133	.	A	.	.	PASS	END=169094155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	169094156	.	A	.	.	PASS	END=169094249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	169094250	.	G	.	.	PASS	END=169094279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	169096460	.	A	.	.	PASS	END=169096490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	169096491	.	G	.	.	PASS	END=169096634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	169096635	.	T	.	.	PASS	END=169096659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	169099239	.	T	.	.	PASS	END=169099270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	169099271	.	G	.	.	PASS	END=169099304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	169099305	.	C	.	.	PASS	END=169099338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	169100528	.	A	.	.	PASS	END=169100566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	169100567	.	A	.	.	PASS	END=169100625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	169100626	.	C	.	.	PASS	END=169100749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	169100750	.	G	.	.	PASS	END=169100795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	169101317	.	A	.	.	LowGQX	END=169101476	GT	./.
chr1	169101990	.	T	.	.	LowGQX	END=169102089	GT	./.
chr1	169138066	.	T	.	.	LowGQX	END=169138089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169138090	.	T	.	.	LowGQX	END=169138165	GT	./.
chr1	169138265	.	T	.	.	LowGQX	END=169138364	GT	./.
chr1	169138683	.	A	.	.	LowGQX	END=169138687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169138688	.	T	.	.	LowGQX	.	GT	./.
chr1	169138689	.	A	.	.	LowGQX	END=169138691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169138692	.	A	.	.	LowGQX	END=169138753	GT	./.
chr1	169138754	.	T	.	.	LowGQX	END=169138794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169159821	.	A	.	.	LowGQX	END=169159980	GT	./.
chr1	169199954	.	A	.	.	LowGQX	END=169200059	GT	./.
chr1	169204354	.	T	.	.	LowGQX	END=169204367	GT	./.
chr1	169204368	.	C	.	.	LowGQX	END=169204453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169206844	.	C	.	.	LowGQX	END=169206943	GT	./.
chr1	169216242	.	G	.	.	LowGQX	END=169216252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169216253	.	T	.	.	LowGQX	.	GT	./.
chr1	169216254	.	G	.	.	LowGQX	END=169216265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169216266	.	T	.	.	LowGQX	.	GT	./.
chr1	169216267	.	T	.	.	LowGQX	END=169216279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169216280	.	A	.	.	LowGQX	.	GT	./.
chr1	169216281	.	G	.	.	LowGQX	END=169216324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169216325	.	C	.	.	LowGQX	.	GT	./.
chr1	169216326	.	A	.	.	LowGQX	END=169216336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169216337	.	A	.	.	LowGQX	.	GT	./.
chr1	169216338	.	G	.	.	LowGQX	END=169216341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169256445	.	A	.	.	LowGQX	END=169256648	GT	./.
chr1	169267792	.	A	.	.	LowGQX	END=169267796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169267797	.	G	.	.	LowGQX	.	GT	./.
chr1	169267798	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169267799	.	C	.	.	LowGQX	.	GT	./.
chr1	169267800	.	C	.	.	LowGQX	END=169267805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169267806	.	A	.	.	LowGQX	.	GT	./.
chr1	169267807	.	G	.	.	LowGQX	END=169267811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169267812	.	A	.	.	LowGQX	.	GT	./.
chr1	169267813	.	G	.	.	LowGQX	END=169267814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169267815	.	A	.	.	LowGQX	.	GT	./.
chr1	169267816	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169267817	.	C	.	.	LowGQX	.	GT	./.
chr1	169267818	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169267819	.	G	.	.	LowGQX	.	GT	./.
chr1	169267820	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169267821	.	G	.	.	LowGQX	.	GT	./.
chr1	169267822	.	C	.	.	LowGQX	END=169267829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169267830	.	T	.	.	LowGQX	.	GT	./.
chr1	169267831	.	G	.	.	LowGQX	END=169267838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169267839	.	T	.	.	LowGQX	END=169268003	GT	./.
chr1	169272299	.	A	.	.	LowGQX	END=169272458	GT	./.
chr1	169279206	.	A	.	.	LowGQX	END=169279365	GT	./.
chr1	169292353	.	A	.	.	LowGQX	END=169292523	GT	./.
chr1	169293629	.	A	.	.	LowGQX	END=169293740	GT	./.
chr1	169336898	.	A	.	.	LowGQX	END=169336902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	169336903	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	169336904	.	T	.	.	LowGQX	END=169336932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	169336933	.	C	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:4:3.01:60:3
chr1	169336934	.	C	.	.	LowGQX	END=169336963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	169336964	.	G	.	.	LowGQX	END=169336997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	169338725	.	G	.	.	LowGQX	END=169338733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169338734	.	T	.	.	LowGQX	.	GT	./.
chr1	169338735	.	G	.	.	LowGQX	END=169338778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169338779	.	G	.	.	LowGQX	.	GT	./.
chr1	169338780	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169338781	.	A	.	.	LowGQX	END=169338782	GT	./.
chr1	169338783	.	C	.	.	LowGQX	END=169338785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169338786	.	A	.	.	LowGQX	.	GT	./.
chr1	169338787	.	A	.	.	LowGQX	END=169338824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169345776	.	A	.	.	LowGQX	END=169345795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169345796	.	C	.	.	LowGQX	.	GT	./.
chr1	169345797	.	A	.	.	LowGQX	END=169345820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169345821	.	G	.	.	LowGQX	.	GT	./.
chr1	169345822	.	G	.	.	LowGQX	END=169345897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169345898	.	C	.	.	LowGQX	.	GT	./.
chr1	169345899	.	A	.	.	LowGQX	END=169345906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	169345907	.	A	.	.	LowGQX	.	GT	./.
chr1	169345908	.	A	.	.	LowGQX	END=169345926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	169345927	.	C	.	.	LowGQX	.	GT	./.
chr1	169345928	.	C	.	.	LowGQX	END=169345941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169345942	.	C	.	.	LowGQX	.	GT	./.
chr1	169345943	.	T	.	.	LowGQX	END=169345956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169345957	.	A	.	.	LowGQX	.	GT	./.
chr1	169345958	.	C	.	.	LowGQX	END=169345982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169345983	.	T	.	.	LowGQX	END=169346274	GT	./.
chr1	169347566	.	A	.	.	LowGQX	END=169347766	GT	./.
chr1	169347767	.	G	.	.	LowGQX	END=169347769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169349717	.	A	.	.	LowGQX	END=169349849	GT	./.
chr1	169351298	.	A	.	.	LowGQX	END=169351368	GT	./.
chr1	169351369	.	C	.	.	LowGQX	END=169351521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169356233	.	A	.	.	LowGQX	END=169356342	GT	./.
chr1	169356343	.	T	.	.	LowGQX	END=169356432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169364283	.	T	.	.	LowGQX	END=169364369	GT	./.
chr1	169364370	.	A	.	.	LowGQX	END=169364446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169366473	.	A	.	.	LowGQX	END=169366629	GT	./.
chr1	169388209	.	T	.	.	LowGQX	END=169388399	GT	./.
chr1	169390599	.	A	.	.	LowGQX	END=169391553	GT	./.
chr1	169394047	.	A	.	.	LowGQX	END=169394167	GT	./.
chr1	169435036	.	G	.	.	PASS	END=169435078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	169435079	.	G	.	.	PASS	END=169435099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	169435100	.	A	.	.	PASS	END=169435129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	169435130	.	T	.	.	PASS	END=169435199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	169435200	.	T	.	.	PASS	END=169435236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	169435237	.	T	.	.	PASS	END=169435258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	169435259	.	G	.	.	PASS	END=169435266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	169437298	.	A	.	.	PASS	END=169437312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	169437313	.	C	.	.	PASS	END=169437340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:88:60
chr1	169437341	.	G	.	.	PASS	END=169437389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	169437390	.	C	.	.	PASS	END=169437449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	169437450	.	G	.	.	PASS	END=169437538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	169437539	.	C	.	.	PASS	END=169437541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	169437831	.	A	.	.	PASS	END=169437963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	169437964	.	C	.	.	PASS	END=169438060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	169438061	.	C	.	.	PASS	END=169438093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	169438094	.	A	.	.	PASS	END=169438118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	169438119	.	G	.	.	PASS	END=169438125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	169439151	.	C	.	.	PASS	END=169439158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	169439159	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:30:60
chr1	169439160	.	T	.	.	PASS	END=169439164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	169439165	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:60
chr1	169439166	.	C	.	.	PASS	END=169439175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	169439176	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:33:60
chr1	169439177	.	C	.	.	PASS	END=169439180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr1	169439181	.	C	.	.	PASS	END=169439183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	169439184	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:44:60
chr1	169439185	.	T	.	.	PASS	END=169439198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	169439199	.	T	.	.	PASS	END=169439223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	169439224	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:61:60
chr1	169439225	.	A	.	.	PASS	END=169439232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:80:60
chr1	169439233	.	A	.	.	PASS	END=169439266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	169439267	.	T	.	.	PASS	END=169439334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	169439335	.	A	.	.	PASS	END=169439360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	169439361	.	A	.	.	PASS	END=169439382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	169439383	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:55:60
chr1	169439384	.	C	.	.	PASS	END=169439394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	169439395	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:45:60
chr1	169439396	.	A	.	.	PASS	END=169439408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	169439409	.	G	.	.	PASS	END=169439415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	169439416	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:15:60
chr1	169439417	.	T	.	.	PASS	END=169439423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	169439424	.	C	.	.	PASS	END=169439428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	169439429	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	169439430	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	169439431	.	A	.	.	PASS	END=169439433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	169439434	.	A	.	.	LowGQX	END=169439436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	169439437	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	169439438	.	G	.	.	LowGQX	END=169439439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	169439440	.	G	.	.	PASS	END=169439448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	169439449	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	169439450	.	C	.	.	PASS	END=169439463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	169439464	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:21:60
chr1	169439465	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	169439466	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	169439467	.	A	.	.	PASS	END=169439469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	169439470	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	169439471	.	A	.	.	PASS	END=169439474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	169439475	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	169446342	.	C	.	.	PASS	END=169446348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	169446349	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:38:25:60
chr1	169446350	.	G	.	.	PASS	END=169446374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	169446375	.	A	.	.	PASS	END=169446398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	169446399	.	C	.	.	PASS	END=169446451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	169446452	.	A	.	.	PASS	END=169446480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	169446481	.	T	.	.	PASS	END=169446531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	169446532	.	G	.	.	PASS	END=169446607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	169446608	.	C	.	.	PASS	END=169446624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	169446625	.	A	.	.	PASS	END=169446709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:292:99:60
chr1	169446710	.	C	.	.	PASS	END=169446847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:372:99:60
chr1	169446848	.	C	.	.	PASS	END=169446865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:307:99:60
chr1	169446866	.	A	.	.	PASS	END=169446893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	169446894	.	T	.	.	PASS	END=169446907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	169446908	.	T	.	.	PASS	END=169446922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	169446923	.	C	.	.	PASS	END=169446941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	169446942	.	A	.	.	PASS	END=169446959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	169446960	.	A	.	.	PASS	END=169446964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	169446965	.	A	.	.	PASS	END=169446974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	169446975	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:66:60
chr1	169446976	.	G	.	.	PASS	END=169446979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:60
chr1	169446980	.	A	.	.	PASS	END=169446982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	169446983	.	T	.	.	PASS	END=169446985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	169446986	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:30:60
chr1	169446987	.	A	.	.	PASS	END=169446989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	169446990	.	G	.	.	PASS	END=169446991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:60
chr1	169446992	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:54:60
chr1	169446993	.	G	.	.	LowGQX	END=169446994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:24:60
chr1	169446995	.	C	.	.	PASS	END=169446996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	169446997	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:27:60
chr1	169446998	.	G	.	60.06	PASS	DP=21;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:16:21:30.07:60:30
chr1	169446999	.	G	.	.	PASS	END=169447001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	169447002	.	G	.	45.04	LowGQX	DP=21;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:14:21:15.05:60:15
chr1	169447003	.	A	.	.	PASS	END=169447004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	169447005	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:42:60
chr1	169447006	.	G	A	4.97	LowGQX;LowQD;SB	BaseQRankSum=1.504;DP=18;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=32.4841;MQ=60;MQ0=0;MQRankSum=0.810;QD=0.28;ReadPosRankSum=0.579;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:14,1:18:30.11:33,0,30:60:5:0.067
chr1	169447007	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr1	169447008	.	G	A	69.72	SB	BaseQRankSum=1.133;DP=17;Dels=0.00;FS=0.000;HRun=12;HaplotypeScore=31.4849;MQ=60;MQ0=0;MQRankSum=-0.741;QD=4.10;ReadPosRankSum=0.365;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:6,4:17:60.40:100,0,60:60:60:0.400
chr1	169447009	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:60
chr1	169447010	.	A	.	.	PASS	END=169447027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	169447028	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:27:60
chr1	169447029	.	A	.	.	PASS	END=169447036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	169454750	.	C	.	.	PASS	END=169454802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	169454803	.	C	.	.	PASS	END=169454847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	169454848	.	G	.	.	PASS	END=169455055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	169483500	.	A	.	.	PASS	END=169483531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	169483532	.	G	.	.	PASS	END=169483560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	169483561	.	T	C	802.32	PASS	BaseQRankSum=-0.822;DP=65;Dels=0.00;FS=14.353;HRun=1;HaplotypeScore=3.8404;MQ=60;MQ0=0;MQRankSum=1.520;QD=12.34;ReadPosRankSum=-0.822;SB=-149.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,30:65:99:832,0,1153:60:99:0.462
chr1	169483562	.	C	.	.	PASS	END=169483585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	169483586	.	G	.	.	PASS	END=169483636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	169483637	.	T	.	.	PASS	END=169483744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	169483745	.	A	.	.	PASS	END=169483748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	169484631	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	169484632	.	T	.	.	PASS	END=169484633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	169484634	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	169484635	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	169484636	.	A	.	.	LowGQX	END=169484638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	169484639	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	169484640	.	C	.	.	LowGQX	END=169484641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	169484642	.	G	.	.	PASS	END=169484643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	169484644	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:2:60
chr1	169484645	.	T	.	.	PASS	END=169484649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	169484650	.	A	.	.	PASS	END=169484651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	169484652	.	T	.	.	PASS	END=169484657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	169484658	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:3:60
chr1	169484659	.	T	.	.	PASS	END=169484664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	169484665	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	169484666	.	C	.	.	PASS	END=169484669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	169484670	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr1	169484671	.	T	.	.	PASS	END=169484675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	169484676	.	C	.	.	PASS	END=169484684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	169484685	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:18:60
chr1	169484686	.	T	.	.	PASS	END=169484687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	169484688	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:18:60
chr1	169484689	.	A	.	.	PASS	END=169484720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	169484721	.	T	.	.	PASS	END=169484724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	169484725	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:44:60
chr1	169484726	.	C	.	.	PASS	END=169484734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	169484735	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:24:60
chr1	169484736	.	A	.	.	PASS	END=169484738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	169484739	.	G	.	.	PASS	END=169484748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	169484749	.	G	.	.	PASS	END=169484794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	169484795	.	G	.	.	PASS	END=169484899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	169484900	.	T	.	.	PASS	END=169484915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	169487599	.	T	.	.	PASS	END=169487604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	169487605	.	T	.	.	PASS	END=169487614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	169487615	.	C	.	.	PASS	END=169487616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	169487617	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	169487618	.	T	.	.	PASS	END=169487630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	169487631	.	T	.	.	PASS	END=169487632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	169487633	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:60
chr1	169487634	.	A	.	.	PASS	END=169487636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr1	169487637	.	G	.	.	PASS	END=169487647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	169487648	.	A	.	.	PASS	END=169487673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	169487674	.	T	.	.	PASS	END=169487706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	169487707	.	C	.	.	PASS	END=169487787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	169487788	.	G	.	.	PASS	END=169487800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	169487801	.	C	.	.	PASS	END=169487820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	169487821	.	G	T	675.09	PASS	BaseQRankSum=3.434;DP=70;Dels=0.00;FS=3.845;HRun=1;HaplotypeScore=5.6815;MQ=60;MQ0=0;MQRankSum=-0.525;QD=9.64;ReadPosRankSum=1.812;SB=-168.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:41,29:70:99:705,0,1003:60:99:0.414
chr1	169487822	.	T	.	.	PASS	END=169487851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	169487852	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:99:60
chr1	169489707	.	A	.	.	PASS	END=169489783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	169489784	.	A	.	.	PASS	END=169489877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	169489878	.	A	.	.	PASS	END=169489947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	169489948	.	A	.	.	PASS	END=169489953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	169492384	.	T	.	.	PASS	END=169492400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	169492401	.	G	.	.	PASS	END=169492479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	169492480	.	C	.	.	PASS	END=169492520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	169492521	.	A	.	.	PASS	END=169492544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	169492545	.	C	.	.	PASS	END=169492590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	169492591	.	C	.	.	PASS	END=169492625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr1	169492626	.	T	.	.	PASS	END=169492641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	169492988	.	C	.	.	PASS	END=169493014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	169493015	.	T	.	.	PASS	END=169493117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	169493118	.	C	.	.	PASS	END=169493193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	169494024	.	G	.	.	PASS	END=169494026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	169494027	.	G	.	.	PASS	END=169494028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:46:60
chr1	169494029	.	A	.	.	PASS	END=169494032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	169494033	.	C	.	.	PASS	END=169494070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	169494071	.	T	.	.	PASS	END=169494113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	169494114	.	T	.	.	PASS	END=169494180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	169494181	.	C	.	.	PASS	END=169494195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	169494196	.	C	T	1006.70	PASS	BaseQRankSum=0.548;DP=87;Dels=0.00;FS=0.863;HRun=0;HaplotypeScore=2.8935;MQ=60;MQ0=0;MQRankSum=-1.024;QD=11.57;ReadPosRankSum=-0.420;SB=-493.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,45:87:99:1037,0,1029:60:99:0.517
chr1	169494197	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:86:99:60
chr1	169495088	.	A	.	.	PASS	END=169495113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:87:60
chr1	169495114	.	A	.	.	PASS	END=169495130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	169495131	.	T	.	.	PASS	END=169495163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	169495164	.	T	.	.	PASS	END=169495281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	169495282	.	T	.	.	PASS	END=169495296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	169497102	.	C	.	.	PASS	END=169497116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	169497117	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:54:60
chr1	169497118	.	T	.	.	PASS	END=169497124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	169497125	.	G	.	.	PASS	END=169497137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	169497138	.	T	.	.	PASS	END=169497169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:94:60
chr1	169497170	.	A	.	.	PASS	END=169497255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	169497256	.	G	.	.	PASS	END=169497288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	169497289	.	A	.	.	PASS	END=169497318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	169497319	.	C	.	.	PASS	END=169497357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:60
chr1	169497358	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:71:60
chr1	169497359	.	T	.	.	PASS	END=169497383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	169498795	.	T	.	.	PASS	END=169498833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	169498834	.	T	C	850.85	PASS	BaseQRankSum=-2.921;DP=94;Dels=0.00;FS=1.114;HRun=1;HaplotypeScore=13.3091;MQ=60;MQ0=0;MQRankSum=-0.625;QD=9.05;ReadPosRankSum=0.193;SB=-188.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:50,44:94:99:881,0,1497:60:99:0.468
chr1	169498835	.	G	.	.	PASS	END=169498877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	169498878	.	G	.	.	PASS	END=169498974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	169498975	.	T	C	1180.59	PASS	BaseQRankSum=0.048;DP=126;Dels=0.00;FS=2.743;HRun=0;HaplotypeScore=7.5754;MQ=60;MQ0=0;MQRankSum=0.073;QD=9.37;ReadPosRankSum=-0.907;SB=-453.10	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:78,48:126:99:1211,0,2246:60:99:0.381
chr1	169498976	.	A	.	.	PASS	END=169498999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	169499000	.	T	.	.	PASS	END=169499029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	169499030	.	T	.	.	PASS	END=169499038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	169499039	.	T	.	.	PASS	END=169499077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	169499078	.	T	.	.	PASS	END=169499083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	169499084	.	C	.	.	PASS	END=169499107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	169499973	.	T	.	.	PASS	END=169500002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	169500003	.	A	.	.	PASS	END=169500019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	169500020	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:12:60
chr1	169500021	.	T	.	.	PASS	END=169500029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	169500030	.	C	.	.	PASS	END=169500031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	169500032	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:30:60
chr1	169500033	.	A	.	.	PASS	END=169500055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	169500056	.	G	.	.	PASS	END=169500073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	169500074	.	T	.	.	PASS	END=169500080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	169500081	.	C	.	.	PASS	END=169500100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	169500101	.	G	.	.	PASS	END=169500138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	169500139	.	T	.	.	PASS	END=169500204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	169500205	.	G	.	.	PASS	END=169500229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	169500230	.	A	.	.	PASS	END=169500244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	169500245	.	A	.	.	PASS	END=169500260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	169500261	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:51:60
chr1	169500262	.	T	.	.	PASS	END=169500275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	169500276	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:57:60
chr1	169500277	.	T	.	.	PASS	END=169500289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	169500290	.	T	.	.	PASS	END=169500294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	169500295	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:27:60
chr1	169500296	.	T	.	.	PASS	END=169500307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	169500308	.	T	.	.	PASS	END=169500311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	169505693	.	G	.	.	PASS	END=169505718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	169505719	.	T	.	.	PASS	END=169505745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	169505746	.	G	.	.	PASS	END=169505760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	169505761	.	C	.	.	PASS	END=169505865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	169505866	.	T	.	.	PASS	END=169505889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	169505890	.	T	.	.	PASS	END=169505904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	169505905	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:48:60
chr1	169505906	.	A	.	.	PASS	END=169505952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	169505953	.	A	.	.	PASS	END=169505969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	169509481	.	T	.	.	PASS	END=169509482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	169509483	.	T	G	730.87	SB	BaseQRankSum=-0.287;DP=46;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.7338;MQ=60;MQ0=0;MQRankSum=0.221;QD=15.89;ReadPosRankSum=-0.044;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:21,25:46:99:761,0,690:60:99:0.543
chr1	169509484	.	C	.	.	PASS	END=169509541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:82:60
chr1	169509542	.	A	.	.	PASS	END=169509602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	169509603	.	G	.	.	PASS	END=169509614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	169509615	.	G	.	.	PASS	END=169509629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	169509630	.	G	.	.	PASS	END=169509648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	169509649	.	G	.	.	PASS	END=169509686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr1	169509687	.	A	.	.	PASS	END=169509718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:276:99:60
chr1	169509719	.	C	.	.	PASS	END=169509779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:365:99:60
chr1	169509780	.	A	.	.	PASS	END=169509939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:434:99:60
chr1	169509940	.	A	.	.	PASS	END=169509997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:329:99:60
chr1	169509998	.	C	.	.	PASS	END=169510054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:252:99:60
chr1	169510055	.	C	.	.	PASS	END=169510060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr1	169510061	.	T	.	356.36	PASS	DP=232;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:182:232:99:60:99
chr1	169510062	.	T	.	.	PASS	END=169510143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:59
chr1	169510144	.	G	.	.	PASS	END=169510229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:288:99:51
chr1	169510230	.	A	.	.	PASS	END=169510245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:258:99:49
chr1	169510246	.	G	A	415.24	LowQD	BaseQRankSum=-2.176;DP=239;Dels=0.00;FS=7.568;HRun=0;HaplotypeScore=158.7059;MQ=49;MQ0=12;MQRankSum=-0.435;QD=1.74;ReadPosRankSum=-0.158;SB=-116.04	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:126,74:239:99:445,0,1654:49:99:0.370
chr1	169510247	.	G	.	.	PASS	END=169510292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:47
chr1	169510293	.	T	.	243.54	PASS	DP=222;MQ=47;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:142:222:99:47:99
chr1	169510294	.	T	.	.	PASS	END=169510327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:43
chr1	169510328	.	A	.	276.62	PASS	DP=251;MQ=42;MQ0=29	GT:AD:DP:GQ:MQ:GQX	0/0:175:251:99:42:99
chr1	169510329	.	G	.	.	PASS	END=169510347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:257:99:40
chr1	169510348	.	T	C	607.11	PASS	BaseQRankSum=-3.233;DP=275;Dels=0.00;FS=4.235;HRun=0;HaplotypeScore=147.9918;MQ=41;MQ0=30;MQRankSum=2.892;QD=2.21;ReadPosRankSum=1.428;SB=-212.87	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:202,58:275:99:637,0,2649:41:99:0.223
chr1	169510349	.	G	.	.	PASS	END=169510366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:40
chr1	169510367	.	T	G	204.13	LowQD;SB	BaseQRankSum=-4.592;DP=230;Dels=0.00;FS=15.731;HRun=3;HaplotypeScore=86.8277;MQ=44;MQ0=15;MQRankSum=2.384;QD=0.89;ReadPosRankSum=-0.529;SB=-6.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:173,56:230:99:234,0,2340:44:99:0.245
chr1	169510368	.	G	.	.	PASS	END=169510378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:45
chr1	169510379	.	C	.	247.99	PASS	DP=242;MQ=46;MQ0=13	GT:AD:DP:GQ:MQ:GQX	0/0:193:242:99:46:99
chr1	169510380	.	G	.	.	PASS	END=169510462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:45
chr1	169510463	.	A	G	5.14	LowGQX;LowQD;SB	BaseQRankSum=-4.386;DP=245;Dels=0.00;FS=1.549;HRun=1;HaplotypeScore=112.1267;MQ=44;MQ0=21;MQRankSum=1.840;QD=0.02;ReadPosRankSum=-1.195;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:170,34:245:33.55:34,0,2297:44:5:0.167
chr1	169510464	.	G	.	.	PASS	END=169510503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:40
chr1	169510504	.	G	.	.	PASS	END=169510513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:41
chr1	169510514	.	C	.	165.36	PASS	DP=202;MQ=43;MQ0=13	GT:AD:DP:GQ:MQ:GQX	0/0:159:202:99:43:99
chr1	169510515	.	G	.	.	PASS	END=169510523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:43
chr1	169510524	.	A	G	448.74	PASS	BaseQRankSum=-0.675;DP=203;Dels=0.00;FS=1.055;HRun=2;HaplotypeScore=169.9123;MQ=44;MQ0=12;MQRankSum=-5.833;QD=2.21;ReadPosRankSum=0.936;SB=-141.43	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:101,77:203:99:479,0,1376:44:99:0.433
chr1	169510525	.	G	.	.	PASS	END=169510543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:43
chr1	169510544	.	G	.	.	PASS	END=169510575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:43
chr1	169510576	.	A	.	270.63	PASS	DP=224;MQ=47;MQ0=7	GT:AD:DP:GQ:MQ:GQX	0/0:173:224:99:47:99
chr1	169510577	.	A	.	228.53	PASS	DP=222;MQ=47;MQ0=7	GT:AD:DP:GQ:MQ:GQX	0/0:135:222:99:47:99
chr1	169510578	.	A	.	.	PASS	END=169510580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:47
chr1	169510581	.	A	.	258.63	PASS	DP=211;MQ=47;MQ0=7	GT:AD:DP:GQ:MQ:GQX	0/0:166:211:99:47:99
chr1	169510582	.	A	.	.	PASS	END=169510602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:46
chr1	169510603	.	G	.	241.63	PASS	DP=235;MQ=48;MQ0=11	GT:AD:DP:GQ:MQ:GQX	0/0:186:235:99:48:99
chr1	169510604	.	G	.	.	PASS	END=169510625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:47
chr1	169510626	.	G	.	.	PASS	END=169510636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:49
chr1	169510637	.	T	G	358.04	LowQD	BaseQRankSum=-3.482;DP=255;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=115.2893;MQ=49;MQ0=13;MQRankSum=-0.863;QD=1.40;ReadPosRankSum=-1.698;SB=-129.74	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:199,56:255:99:388,0,3243:49:99:0.220
chr1	169510638	.	G	.	.	PASS	END=169510691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:49
chr1	169510692	.	A	.	333.91	PASS	DP=234;MQ=55;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:175:234:99:55:99
chr1	169510693	.	G	.	.	PASS	END=169510697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:55
chr1	169510698	.	G	.	339.92	PASS	DP=229;MQ=56;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:174:229:99:56:99
chr1	169510699	.	T	.	.	PASS	END=169510884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:56
chr1	169510885	.	G	.	.	PASS	END=169510992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	169510993	.	C	.	.	PASS	END=169511071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr1	169511072	.	A	.	.	PASS	END=169511209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:264:99:60
chr1	169511210	.	G	.	.	PASS	END=169511354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:330:99:60
chr1	169511355	.	C	.	.	PASS	END=169511378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr1	169511379	.	T	.	.	PASS	END=169511500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr1	169511501	.	A	.	.	PASS	END=169511736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:257:99:60
chr1	169511737	.	T	.	.	PASS	END=169511792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	169511793	.	T	.	.	PASS	END=169511818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	169511819	.	C	.	.	PASS	END=169511877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	169511878	.	T	G	2737.93	PASS	BaseQRankSum=0.997;DP=222;Dels=0.00;FS=6.862;HRun=1;HaplotypeScore=20.9802;MQ=60;MQ0=0;MQRankSum=1.556;QD=12.33;ReadPosRankSum=0.222;SB=-671.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:118,102:222:99:2768,0,3189:60:99:0.464
chr1	169511879	.	T	.	.	PASS	END=169512038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	169512039	.	T	C	3192.54	PASS	BaseQRankSum=0.151;DP=232;Dels=0.00;FS=1.040;HRun=0;HaplotypeScore=23.0435;MQ=60;MQ0=0;MQRankSum=-0.537;QD=13.76;ReadPosRankSum=0.411;SB=-1470.93	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:117,114:232:99:3223,0,3288:60:99:0.494
chr1	169512040	.	T	.	.	PASS	END=169512182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	169512183	.	A	.	.	PASS	END=169512206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	169512207	.	C	.	.	PASS	END=169512273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	169512274	.	A	.	.	PASS	END=169512294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	169512295	.	T	.	.	PASS	END=169512366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	169512367	.	C	.	.	PASS	END=169512378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	169512379	.	A	.	.	PASS	END=169512403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	169513483	.	A	.	.	PASS	END=169513505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	169513506	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:51:60
chr1	169513507	.	T	.	.	PASS	END=169513523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	169513524	.	T	.	.	PASS	END=169513536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	169513537	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:75:60
chr1	169513538	.	A	.	.	PASS	END=169513576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:81:60
chr1	169513577	.	G	.	.	PASS	END=169513582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	169513583	.	G	T	879.95	PASS	BaseQRankSum=1.957;DP=75;Dels=0.00;FS=4.735;HRun=0;HaplotypeScore=7.5754;MQ=60;MQ0=0;MQRankSum=-0.567;QD=11.73;ReadPosRankSum=0.260;SB=-586.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:36,39:75:99:910,0,757:60:99:0.520
chr1	169513584	.	G	.	.	PASS	END=169513687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	169513688	.	A	.	.	PASS	END=169513724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:87:60
chr1	169513725	.	T	.	.	PASS	END=169513736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	169513737	.	C	.	.	PASS	END=169513761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	169513762	.	C	.	.	PASS	END=169513791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	169513792	.	A	.	.	PASS	END=169513803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	169515629	.	T	.	.	PASS	END=169515652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	169515653	.	A	.	.	PASS	END=169515687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	169515688	.	A	.	.	PASS	END=169515725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	169515726	.	C	T	1337.87	PASS	BaseQRankSum=2.478;DP=119;Dels=0.00;FS=4.564;HRun=1;HaplotypeScore=9.4692;MQ=60;MQ0=0;MQRankSum=0.379;QD=11.24;ReadPosRankSum=-1.355;SB=-703.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:59,58:119:99:1368,0,1352:60:99:0.496
chr1	169515727	.	T	.	.	PASS	END=169515794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	169515795	.	A	.	.	PASS	END=169515829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	169515830	.	T	.	.	PASS	END=169515854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	169515855	.	T	.	.	PASS	END=169515870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	169515871	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:75:60
chr1	169518988	.	G	.	.	PASS	END=169519023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	169519024	.	T	.	.	PASS	END=169519037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	169519038	.	C	.	.	PASS	END=169519043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	169519044	.	T	.	.	PASS	END=169519048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	169519049	.	T	C	973.64	PASS	DP=32;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;QD=30.43;SB=-211.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,31:32:78.24:1007,78,0:60:78:1.000
chr1	169519050	.	G	.	.	PASS	END=169519062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	169519063	.	T	.	.	PASS	END=169519068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	169519069	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:63:60
chr1	169519070	.	T	.	.	PASS	END=169519091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	169519092	.	T	.	.	PASS	END=169519119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	169519120	.	G	.	.	PASS	END=169519144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	169519145	.	G	.	.	PASS	END=169519194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	169519195	.	C	.	.	PASS	END=169519227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	169519228	.	T	.	.	PASS	END=169519249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	169519250	.	C	.	.	PASS	END=169519282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	169519283	.	C	.	.	PASS	END=169519288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	169519289	.	C	.	.	PASS	END=169519304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	169519827	.	C	.	.	PASS	END=169519874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	169519875	.	A	.	.	PASS	END=169519893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	169519894	.	G	A	1484.92	PASS	BaseQRankSum=3.522;DP=121;Dels=0.00;FS=1.594;HRun=1;HaplotypeScore=7.5754;MQ=60;MQ0=0;MQRankSum=-0.045;QD=12.27;ReadPosRankSum=0.720;SB=-731.80	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:58,61:121:99:1515,0,1318:60:99:0.513
chr1	169519895	.	T	.	.	PASS	END=169519914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	169519915	.	C	.	.	PASS	END=169520005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	169520006	.	G	.	.	PASS	END=169520028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	169521744	.	T	.	.	PASS	END=169521747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	169521748	.	A	.	.	PASS	END=169521758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	169521759	.	T	.	.	PASS	END=169521764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	169521765	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:70:60
chr1	169521766	.	T	.	.	PASS	END=169521819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	169521820	.	C	.	.	PASS	END=169521852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	169521853	.	A	G	859.12	PASS	BaseQRankSum=-0.394;DP=74;Dels=0.00;FS=0.913;HRun=0;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=-0.270;QD=11.61;ReadPosRankSum=-0.653;SB=-371.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:37,35:74:99:889,0,1077:60:99:0.486
chr1	169521854	.	T	.	.	PASS	END=169521897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	169521898	.	T	.	.	PASS	END=169521909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:92:60
chr1	169521910	.	A	.	.	PASS	END=169521917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	169521918	.	A	.	.	PASS	END=169521962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	169521963	.	C	.	.	PASS	END=169521965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	169521966	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:15:60
chr1	169521967	.	T	.	.	PASS	END=169521980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	169521981	.	G	.	.	PASS	END=169522023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	169524369	.	A	.	.	PASS	END=169524379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	169524380	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:27:60
chr1	169524381	.	T	.	.	PASS	END=169524395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	169524396	.	G	.	.	PASS	END=169524417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr1	169524418	.	A	.	.	PASS	END=169524430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	169524431	.	C	.	.	PASS	END=169524447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	169524448	.	C	.	.	PASS	END=169524492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	169524493	.	T	.	.	PASS	END=169524575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	169524576	.	T	.	.	PASS	END=169524597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	169524598	.	A	.	.	PASS	END=169524636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	169525833	.	G	.	.	PASS	END=169525839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	169525840	.	A	.	.	PASS	END=169525852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	169525853	.	G	.	.	PASS	END=169525865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	169525866	.	G	.	.	PASS	END=169525924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	169525925	.	C	.	.	PASS	END=169525926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	169525927	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:30:60
chr1	169525928	.	T	.	.	PASS	END=169525930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	169525931	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:30:60
chr1	169525932	.	G	.	.	PASS	END=169525939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	169525940	.	G	.	.	PASS	END=169525958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	169525959	.	A	.	.	PASS	END=169525987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	169525988	.	A	.	.	PASS	END=169526085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:91:60
chr1	169526086	.	A	.	.	PASS	END=169526105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	169526106	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:69:60
chr1	169526107	.	T	.	.	PASS	END=169526132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	169526133	.	A	.	.	PASS	END=169526154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	169526155	.	T	.	.	PASS	END=169526156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	169528340	.	A	.	.	LowGQX	END=169528346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	169528347	.	T	.	.	LowGQX	END=169528350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	169528351	.	G	.	.	LowGQX	END=169528353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	169528354	.	T	.	.	LowGQX	END=169528362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	169528363	.	G	.	.	PASS	END=169528367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	169528368	.	A	.	.	PASS	END=169528370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	169528371	.	G	.	.	PASS	END=169528377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	169528378	.	G	.	.	PASS	END=169528388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	169528389	.	A	.	.	PASS	END=169528412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:91:60
chr1	169528413	.	T	.	.	PASS	END=169528427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	169528428	.	C	.	.	PASS	END=169528521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	169528522	.	T	.	.	PASS	END=169528537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	169528538	.	T	.	.	PASS	END=169528566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	169528567	.	T	.	.	PASS	END=169528578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	169528579	.	A	.	.	PASS	END=169528585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	169529741	.	C	.	.	PASS	END=169529745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	169529746	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:69:60
chr1	169529747	.	A	.	.	PASS	END=169529770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	169529771	.	T	.	.	PASS	END=169529810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	169529811	.	G	.	.	PASS	END=169529907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	169529908	.	T	.	.	PASS	END=169529934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	169529935	.	T	.	.	PASS	END=169530000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:60
chr1	169530001	.	G	.	.	PASS	END=169530010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	169530011	.	G	.	.	PASS	END=169530032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	169530033	.	T	.	.	PASS	END=169530036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	169530037	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:24:60
chr1	169530038	.	A	.	.	PASS	END=169530055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	169541408	.	T	.	.	PASS	END=169541469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	169541470	.	T	.	.	PASS	END=169541499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	169541500	.	C	.	.	PASS	END=169541557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	169541558	.	C	.	.	PASS	END=169541603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:84:60
chr1	169541604	.	T	.	.	PASS	END=169541632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	169551618	.	T	.	.	PASS	END=169551662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	169551663	.	G	.	.	PASS	END=169551681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	169551682	.	T	.	.	PASS	END=169551706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	169551707	.	G	.	.	PASS	END=169551729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	169551730	.	T	.	.	PASS	END=169551808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	169551809	.	T	A	1485.30	PASS	BaseQRankSum=1.572;DP=101;Dels=0.00;FS=1.887;HRun=1;HaplotypeScore=5.7343;MQ=60;MQ0=0;MQRankSum=0.241;QD=14.71;ReadPosRankSum=-2.089;SB=-505.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:50,51:101:99:1515,0,1359:60:99:0.505
chr1	169551810	.	T	.	.	PASS	END=169551811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	169555416	.	A	.	.	PASS	END=169555451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	169555452	.	C	.	.	PASS	END=169555537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	169555538	.	T	.	.	PASS	END=169555602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	169555603	.	G	.	.	PASS	END=169555637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	169555638	.	C	.	.	PASS	END=169555665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	169555666	.	C	.	.	PASS	END=169555675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	169559364	.	A	.	.	PASS	END=169559459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	169559460	.	G	.	.	PASS	END=169559463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	169560572	.	C	.	.	PASS	END=169560584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:78:60
chr1	169560585	.	T	.	.	PASS	END=169560616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	169560617	.	A	.	.	PASS	END=169560729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	169562841	.	A	.	.	PASS	END=169562870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	169562871	.	A	.	.	PASS	END=169562901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	169562902	.	A	.	.	PASS	END=169562962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	169562963	.	C	.	.	PASS	END=169562964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	169563928	.	A	.	.	PASS	END=169563946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	169563947	.	G	.	.	PASS	END=169564085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	169564086	.	T	.	.	PASS	END=169564101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	169564102	.	T	.	.	PASS	END=169564117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	169565161	.	A	.	.	PASS	END=169565192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	169565193	.	G	.	.	PASS	END=169565339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	169565340	.	A	.	.	PASS	END=169565362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	169565363	.	G	.	.	PASS	END=169565374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	169566227	.	A	.	.	PASS	END=169566246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	169566247	.	T	.	.	PASS	END=169566344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	169566345	.	A	.	.	PASS	END=169566372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	169566373	.	G	.	.	PASS	END=169566397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	169566398	.	T	.	.	PASS	END=169566416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	169572262	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:48:60
chr1	169572263	.	C	.	.	PASS	END=169572281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	169572282	.	A	.	.	PASS	END=169572292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	169572293	.	C	.	.	PASS	END=169572346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	169572347	.	T	.	.	PASS	END=169572435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	169572436	.	T	.	.	PASS	END=169572445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	169572446	.	A	.	.	PASS	END=169572451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	169576170	.	A	.	.	PASS	END=169576229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	169576230	.	G	.	.	PASS	END=169576330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	169576331	.	C	.	.	PASS	END=169576374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	169578740	.	A	.	.	PASS	END=169578779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	169578780	.	T	.	.	PASS	END=169578852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	169578853	.	A	.	.	PASS	END=169578904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	169578905	.	C	.	.	PASS	END=169578922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	169578923	.	A	.	.	PASS	END=169578929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	169580728	.	A	.	.	PASS	END=169580749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	169580750	.	G	.	.	PASS	END=169580772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:249:99:60
chr1	169580773	.	G	.	.	PASS	END=169580877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:264:99:60
chr1	169580878	.	T	.	.	PASS	END=169580905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	169580906	.	C	.	.	PASS	END=169580913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	169580914	.	A	.	.	PASS	END=169580917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:61
chr1	169581453	.	A	.	.	PASS	END=169581467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	169581468	.	G	.	.	PASS	END=169581482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	169581483	.	T	.	.	PASS	END=169581498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	169581499	.	C	.	.	PASS	END=169581623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	169581624	.	G	.	.	PASS	END=169581633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	169581634	.	T	.	.	PASS	END=169581642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	169582165	.	A	.	.	PASS	END=169582176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	169582177	.	T	.	.	PASS	END=169582316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	169582317	.	C	.	.	PASS	END=169582327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	169582328	.	A	.	.	PASS	END=169582353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	169582354	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:90:99:60
chr1	169582822	.	A	.	.	PASS	END=169582933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	169586264	.	A	.	.	PASS	END=169586267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	169586268	.	G	.	.	PASS	END=169586299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	169586300	.	G	.	.	PASS	END=169586329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	169586330	.	C	T	1690.86	PASS	BaseQRankSum=2.255;DP=129;Dels=0.00;FS=2.271;HRun=0;HaplotypeScore=17.0870;MQ=60;MQ0=0;MQRankSum=0.564;QD=13.11;ReadPosRankSum=0.942;SB=-184.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:69,60:129:99:1721,0,1903:60:99:0.465
chr1	169586331	.	G	.	.	PASS	END=169586352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	169586353	.	C	.	.	PASS	END=169586400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	169586401	.	T	.	.	PASS	END=169586483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	169586484	.	G	.	.	PASS	END=169586619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr1	169586620	.	T	.	.	PASS	END=169586638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	169586639	.	C	.	.	PASS	END=169586654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	169588363	.	T	.	.	PASS	END=169588401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	169588402	.	A	.	.	PASS	END=169588462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	169599262	.	A	.	.	PASS	END=169599360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	169599361	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:99:60
chr1	169660884	.	G	.	.	PASS	END=169660922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	169660923	.	A	.	.	PASS	END=169660983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	169665575	.	C	.	.	PASS	END=169665584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr1	169665585	.	G	.	.	PASS	END=169665598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	169665599	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:51:60
chr1	169665600	.	T	.	.	PASS	END=169665631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	169665632	.	T	C	689.61	PASS	BaseQRankSum=0.176;DP=59;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-0.069;QD=11.69;ReadPosRankSum=0.802;SB=-92.13	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,26:59:99:720,0,1009:60:99:0.441
chr1	169665633	.	G	.	.	PASS	END=169665661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	169665662	.	C	.	.	PASS	END=169665734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	169670693	.	T	.	.	PASS	END=169670757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	169670758	.	C	.	.	PASS	END=169670808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	169670809	.	T	.	.	PASS	END=169670829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	169672395	.	C	.	.	PASS	END=169672423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	169672424	.	G	.	.	PASS	END=169672535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	169672536	.	T	.	.	PASS	END=169672558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	169672559	.	T	.	.	PASS	END=169672574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	169672575	.	T	.	.	PASS	END=169672581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	169673708	.	C	.	.	PASS	END=169673720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	169673721	.	G	.	.	PASS	END=169673856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr1	169673857	.	A	.	.	PASS	END=169673870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	169673871	.	C	.	.	PASS	END=169673894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	169676482	.	C	.	.	PASS	END=169676485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	169676486	.	A	G	641.08	PASS	BaseQRankSum=-0.029;DP=50;Dels=0.00;FS=2.488;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.243;QD=12.82;ReadPosRankSum=-0.107;SB=-329.47	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,24:50:99:671,0,638:60:99:0.480
chr1	169676487	.	C	.	.	PASS	END=169676502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	169676503	.	T	.	.	PASS	END=169676574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	169676575	.	C	.	.	PASS	END=169676590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	169677557	.	C	.	.	PASS	END=169677631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	169677632	.	A	.	.	PASS	END=169677710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	169677711	.	G	.	.	PASS	END=169677760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	169677761	.	C	.	.	PASS	END=169677819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	169677820	.	C	.	.	PASS	END=169677913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	169677914	.	C	.	.	PASS	END=169677939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	169677940	.	G	.	.	PASS	END=169677944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	169679568	.	A	.	.	PASS	END=169679574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	169679575	.	A	.	.	PASS	END=169679627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	169679628	.	T	.	.	PASS	END=169679667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	169680608	.	C	.	.	PASS	END=169680703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	169680704	.	T	.	.	PASS	END=169680707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	169694864	.	T	.	.	PASS	END=169694963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	169695009	.	A	.	.	PASS	END=169695058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	169695059	.	A	.	.	PASS	END=169695108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	169695788	.	A	.	.	PASS	END=169695820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	169695821	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:72:60
chr1	169695822	.	A	.	.	PASS	END=169695882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:78:60
chr1	169695883	.	T	.	.	PASS	END=169695949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	169696488	.	A	.	.	PASS	END=169696507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	169696508	.	G	.	.	PASS	END=169696530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	169696531	.	C	.	.	PASS	END=169696609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	169696610	.	C	.	.	PASS	END=169696665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	169696666	.	A	.	.	PASS	END=169696668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	169696878	.	A	.	.	PASS	END=169696909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	169696910	.	G	.	.	PASS	END=169697040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:60
chr1	169697041	.	G	.	.	PASS	END=169697061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	169697062	.	C	.	.	PASS	END=169697070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	169697197	.	A	.	.	PASS	END=169697277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	169697278	.	C	.	.	PASS	END=169697368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	169697369	.	A	.	.	PASS	END=169697378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	169697379	.	A	.	.	PASS	END=169697388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	169697389	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:86:99:60
chr1	169698325	.	A	.	.	PASS	END=169698339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	169698340	.	G	.	.	PASS	END=169698356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	169698357	.	G	.	.	PASS	END=169698370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	169698371	.	C	.	.	PASS	END=169698508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr1	169698509	.	G	.	.	PASS	END=169698517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	169698627	.	A	.	.	PASS	END=169698795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr1	169698796	.	A	.	.	PASS	END=169698814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	169698815	.	C	.	.	PASS	END=169698816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	169699571	.	A	.	.	PASS	END=169699584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	169699585	.	G	.	.	PASS	END=169699600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	169699601	.	T	.	.	PASS	END=169699615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	169699616	.	A	.	.	PASS	END=169699729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	169699730	.	A	.	.	PASS	END=169699744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	169699745	.	T	.	.	PASS	END=169699754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	169699755	.	A	.	.	PASS	END=169699758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	169699759	.	C	.	.	PASS	END=169699760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	169700974	.	A	.	.	PASS	END=169701039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	169701040	.	T	.	.	PASS	END=169701068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	169701069	.	T	.	.	PASS	END=169701082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	169701083	.	G	.	.	PASS	END=169701085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	169701754	.	A	.	.	PASS	END=169701757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	169701758	.	G	.	.	PASS	END=169701791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	169701792	.	T	.	.	PASS	END=169701891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr1	169701892	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:73:60
chr1	169701893	.	T	.	.	PASS	END=169701896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	169701897	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:66:60
chr1	169701898	.	T	.	.	PASS	END=169701972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:78:60
chr1	169701973	.	A	.	.	PASS	END=169702082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:97:60
chr1	169702083	.	T	.	.	PASS	END=169702131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	169702132	.	G	.	.	PASS	END=169702133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	169702134	.	G	.	.	PASS	END=169702141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	169702686	.	G	.	.	PASS	END=169702715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	169702716	.	C	.	.	PASS	END=169702780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	169702781	.	G	.	.	PASS	END=169702785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	169761716	.	A	.	.	LowGQX	END=169762838	GT	./.
chr1	169764243	.	T	.	.	LowGQX	END=169764354	GT	./.
chr1	169768030	.	T	.	.	LowGQX	END=169768129	GT	./.
chr1	169770019	.	T	.	.	LowGQX	END=169770118	GT	./.
chr1	169771760	.	A	.	.	LowGQX	END=169771868	GT	./.
chr1	169772308	.	A	.	.	LowGQX	END=169772452	GT	./.
chr1	169773214	.	A	.	.	LowGQX	END=169773389	GT	./.
chr1	169775083	.	T	.	.	LowGQX	END=169775237	GT	./.
chr1	169776930	.	A	.	.	LowGQX	END=169777109	GT	./.
chr1	169790811	.	T	.	.	LowGQX	END=169790910	GT	./.
chr1	169792532	.	G	.	.	LowGQX	END=169792536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169792537	.	G	.	.	LowGQX	.	GT	./.
chr1	169792538	.	T	.	.	LowGQX	END=169792539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169792540	.	T	.	.	LowGQX	END=169792541	GT	./.
chr1	169792542	.	A	.	.	LowGQX	END=169792544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169792545	.	T	.	.	LowGQX	END=169792546	GT	./.
chr1	169792547	.	A	.	.	LowGQX	END=169792549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169792550	.	A	.	.	LowGQX	.	GT	./.
chr1	169792551	.	A	.	.	LowGQX	END=169792555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169792556	.	T	.	.	LowGQX	END=169792557	GT	./.
chr1	169792558	.	C	.	.	LowGQX	END=169792559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169792560	.	T	.	.	LowGQX	.	GT	./.
chr1	169792561	.	T	.	.	LowGQX	END=169792562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169792563	.	C	.	.	LowGQX	.	GT	./.
chr1	169792564	.	C	.	.	LowGQX	END=169792566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169792567	.	T	.	.	LowGQX	.	GT	./.
chr1	169792568	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169792569	.	T	.	.	LowGQX	.	GT	./.
chr1	169792570	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169792571	.	A	.	.	LowGQX	END=169792572	GT	./.
chr1	169792573	.	T	.	.	LowGQX	END=169792575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169792576	.	T	.	.	LowGQX	END=169792577	GT	./.
chr1	169792578	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169792579	.	T	.	.	LowGQX	.	GT	./.
chr1	169792580	.	G	.	.	LowGQX	END=169792584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169792585	.	T	.	.	LowGQX	.	GT	./.
chr1	169792586	.	T	.	.	LowGQX	END=169792587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169792588	.	C	.	.	LowGQX	END=169792590	GT	./.
chr1	169792591	.	C	.	.	LowGQX	END=169792594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169792595	.	T	.	.	LowGQX	.	GT	./.
chr1	169792596	.	G	.	.	LowGQX	END=169792598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169792599	.	T	.	.	LowGQX	END=169792631	GT	./.
chr1	169795196	.	C	.	.	LowGQX	END=169795295	GT	./.
chr1	169796190	.	A	.	.	LowGQX	END=169796198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169796199	.	C	.	.	LowGQX	.	GT	./.
chr1	169796200	.	C	.	.	LowGQX	END=169796220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169796221	.	G	.	.	LowGQX	END=169796222	GT	./.
chr1	169796223	.	A	.	.	LowGQX	END=169796225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169796226	.	T	.	.	LowGQX	.	GT	./.
chr1	169796227	.	C	.	.	LowGQX	END=169796231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169796232	.	G	.	.	LowGQX	.	GT	./.
chr1	169796233	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169796234	.	A	.	.	LowGQX	END=169796342	GT	./.
chr1	169796850	.	A	.	.	LowGQX	END=169796853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169796854	.	C	.	.	LowGQX	END=169796983	GT	./.
chr1	169798402	.	A	.	.	LowGQX	END=169798592	GT	./.
chr1	169799392	.	T	.	.	LowGQX	END=169799462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169799463	.	G	.	.	LowGQX	.	GT	./.
chr1	169799464	.	C	.	.	LowGQX	END=169799491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169799813	.	G	.	.	LowGQX	END=169799912	GT	./.
chr1	169801553	.	T	.	.	LowGQX	END=169801652	GT	./.
chr1	169806066	.	A	.	.	LowGQX	END=169806067	GT	./.
chr1	169806068	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169806069	.	T	.	.	LowGQX	END=169806070	GT	./.
chr1	169806071	.	G	.	.	LowGQX	END=169806074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169806075	.	T	.	.	LowGQX	END=169806079	GT	./.
chr1	169806080	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169806081	.	A	.	.	LowGQX	.	GT	./.
chr1	169806082	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169806083	.	A	.	.	LowGQX	END=169806086	GT	./.
chr1	169806087	.	T	.	.	LowGQX	END=169806088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169806089	.	T	.	.	LowGQX	.	GT	./.
chr1	169806090	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169806091	.	C	.	.	LowGQX	.	GT	./.
chr1	169806092	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169806093	.	C	.	.	LowGQX	.	GT	./.
chr1	169806094	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169806095	.	A	.	.	LowGQX	END=169806097	GT	./.
chr1	169806098	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169806099	.	A	.	.	LowGQX	.	GT	./.
chr1	169806100	.	A	.	.	LowGQX	END=169806101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169806102	.	C	.	.	LowGQX	.	GT	./.
chr1	169806103	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169806104	.	G	.	.	LowGQX	END=169806255	GT	./.
chr1	169811556	.	A	.	.	LowGQX	END=169811558	GT	./.
chr1	169811559	.	A	.	.	LowGQX	END=169811662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169811663	.	T	.	.	LowGQX	.	GT	./.
chr1	169811664	.	T	.	.	LowGQX	END=169811682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169812813	.	A	.	.	LowGQX	END=169812912	GT	./.
chr1	169816829	.	A	.	.	LowGQX	END=169816946	GT	./.
chr1	169818639	.	A	.	.	LowGQX	END=169818747	GT	./.
chr1	169819397	.	T	.	.	LowGQX	END=169819496	GT	./.
chr1	169820956	.	A	.	.	LowGQX	END=169821032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169821033	.	T	.	.	LowGQX	END=169821194	GT	./.
chr1	169821929	.	A	.	.	LowGQX	END=169822130	GT	./.
chr1	169822834	.	A	.	.	LowGQX	END=169822933	GT	./.
chr1	169823409	.	A	.	.	LowGQX	END=169823679	GT	./.
chr1	169823680	.	G	.	.	LowGQX	END=169823717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169823718	.	T	C	14.85	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.42;SB=-25.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	169823719	.	G	.	.	LowGQX	END=169823866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169823867	.	A	.	.	LowGQX	END=169824107	GT	./.
chr1	169824935	.	A	.	.	LowGQX	END=169824969	GT	./.
chr1	169824970	.	G	.	.	LowGQX	END=169825095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	169825096	.	A	.	.	LowGQX	END=169825124	GT	./.
chr1	169828160	.	T	.	.	LowGQX	END=169828165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169828166	.	T	.	.	LowGQX	END=169828340	GT	./.
chr1	169828341	.	G	.	.	LowGQX	END=169828355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169831752	.	A	.	.	LowGQX	END=169831940	GT	./.
chr1	169833477	.	T	.	.	LowGQX	END=169833651	GT	./.
chr1	169835975	.	A	.	.	LowGQX	END=169836125	GT	./.
chr1	169838067	.	A	.	.	LowGQX	END=169838069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169838070	.	T	.	.	LowGQX	END=169838182	GT	./.
chr1	169839394	.	A	.	.	LowGQX	END=169839553	GT	./.
chr1	169842816	.	A	.	.	LowGQX	END=169842876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169842877	.	T	.	.	LowGQX	END=169842907	GT	./.
chr1	169842908	.	A	.	.	LowGQX	END=169842915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169845117	.	A	.	.	LowGQX	END=169845219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169845220	.	G	.	.	LowGQX	.	GT	./.
chr1	169845221	.	T	.	.	LowGQX	END=169845224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169845225	.	A	.	.	LowGQX	END=169845226	GT	./.
chr1	169845227	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169845228	.	T	.	.	LowGQX	.	GT	./.
chr1	169845229	.	G	.	.	LowGQX	END=169845230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169845231	.	C	.	.	LowGQX	.	GT	./.
chr1	169845232	.	C	.	.	LowGQX	END=169845233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169845234	.	T	.	.	LowGQX	.	GT	./.
chr1	169847773	.	A	.	.	LowGQX	END=169847775	GT	./.
chr1	169847776	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169847777	.	T	.	.	LowGQX	.	GT	./.
chr1	169847778	.	G	.	.	LowGQX	END=169847820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	169847821	.	G	.	.	LowGQX	END=169847962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	169857815	.	A	.	.	LowGQX	END=169857983	GT	./.
chr1	169890815	.	T	.	.	PASS	END=169890834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:91:60
chr1	169890835	.	G	.	.	PASS	END=169890869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	169890870	.	T	.	.	PASS	END=169890924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	169923150	.	A	.	.	PASS	END=169923187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:80:60
chr1	169923188	.	T	.	.	PASS	END=169923248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:87:60
chr1	169923249	.	C	.	.	PASS	END=169923253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	169930185	.	A	.	.	PASS	END=169930229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	169930230	.	A	.	.	PASS	END=169930378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	169941592	.	C	.	.	PASS	END=169941640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	169941641	.	A	.	.	PASS	END=169941664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	169941665	.	C	.	.	PASS	END=169941746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	169947174	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	169947175	.	T	.	.	LowGQX	END=169947176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:27:60
chr1	169947177	.	T	.	.	PASS	END=169947178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	169947179	.	C	.	.	PASS	END=169947180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	169947181	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:60
chr1	169947182	.	A	.	.	PASS	END=169947197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	169947198	.	T	.	.	PASS	END=169947201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	169947202	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	169947203	.	T	.	.	PASS	END=169947204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	169947205	.	C	.	.	PASS	END=169947210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	169947211	.	A	.	.	PASS	END=169947214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	169947215	.	T	.	.	PASS	END=169947221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	169947222	.	A	.	.	PASS	END=169947231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	169947232	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:31:60
chr1	169947233	.	C	.	.	PASS	END=169947240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	169947241	.	T	.	.	PASS	END=169947259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	169947260	.	G	.	.	PASS	END=169947326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	169951111	.	A	.	.	PASS	END=169951112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	169951113	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:63:60
chr1	169951114	.	A	.	.	PASS	END=169951130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	169951131	.	G	.	.	PASS	END=169951207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	169951208	.	A	.	.	PASS	END=169951240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	169951841	.	A	.	.	PASS	END=169951858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	169951859	.	C	.	.	PASS	END=169951961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	169951962	.	T	.	.	PASS	END=169951992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	169951993	.	G	.	.	PASS	END=169951996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	169951997	.	C	T	1391.50	PASS	BaseQRankSum=-0.384;DP=105;Dels=0.00;FS=0.798;HRun=0;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=-0.767;QD=13.25;ReadPosRankSum=0.826;SB=-554.93	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:51,53:105:99:1421,0,1416:60:99:0.510
chr1	169951998	.	C	.	.	PASS	END=169952009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	169952010	.	T	.	.	PASS	END=169952030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:96:60
chr1	169952409	.	A	.	.	PASS	END=169952504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	169952505	.	A	.	.	PASS	END=169952506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	169952507	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:42:60
chr1	169952508	.	A	.	.	PASS	END=169952529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	169952530	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:46:60
chr1	169952531	.	A	.	.	PASS	END=169952568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	169953721	.	A	.	.	PASS	END=169953776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	169953777	.	A	.	.	PASS	END=169953833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	169961294	.	A	.	.	PASS	END=169961299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	169961300	.	G	.	.	PASS	END=169961311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	169961312	.	G	.	.	PASS	END=169961326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	169961327	.	G	.	.	PASS	END=169961398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	169985571	.	A	.	.	PASS	END=169985600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	169985601	.	A	.	.	PASS	END=169985621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	169985622	.	G	.	.	PASS	END=169985651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	169985652	.	C	.	.	PASS	END=169985767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	169993557	.	A	.	.	PASS	END=169993662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	169993663	.	G	.	.	PASS	END=169993711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	169993712	.	A	.	.	PASS	END=169993734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	169993735	.	C	.	.	PASS	END=169993739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	170001025	.	A	.	.	PASS	END=170001026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	170001027	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:30:60
chr1	170001028	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:63:60
chr1	170001029	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:24:60
chr1	170001030	.	G	.	.	PASS	END=170001048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	170001049	.	T	.	.	PASS	END=170001127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	170003461	.	A	.	.	PASS	END=170003486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	170003487	.	G	.	.	PASS	END=170003514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:82:60
chr1	170003515	.	G	.	.	PASS	END=170003593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	170003594	.	C	.	.	PASS	END=170003622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	170003623	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:64:60
chr1	170003624	.	G	.	.	PASS	END=170003636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	170003637	.	G	.	.	PASS	END=170003638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:72:60
chr1	170003639	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:96:60
chr1	170004593	.	A	.	.	PASS	END=170004676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	170004677	.	A	.	.	PASS	END=170004696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:89:60
chr1	170007429	.	A	.	.	PASS	END=170007463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	170007464	.	T	.	.	PASS	END=170007542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	170007543	.	C	.	.	PASS	END=170007585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	170007586	.	G	.	.	PASS	END=170007606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	170007607	.	T	.	.	PASS	END=170007613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	170007614	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:60:60
chr1	170007615	.	A	.	.	PASS	END=170007624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	170007625	.	T	.	.	PASS	END=170007628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	170008352	.	A	.	.	PASS	END=170008366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	170008367	.	G	.	.	PASS	END=170008384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	170008385	.	C	.	.	PASS	END=170008451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	170010810	.	T	.	.	PASS	END=170010909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	170015851	.	A	.	.	PASS	END=170015884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	170015885	.	A	.	.	PASS	END=170016001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	170016002	.	C	.	.	PASS	END=170016009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	170024444	.	A	.	.	PASS	END=170024506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	170024507	.	C	.	.	PASS	END=170024557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	170024558	.	T	.	.	PASS	END=170024563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	170024564	.	C	.	.	PASS	END=170024579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	170043543	.	A	.	.	PASS	END=170043558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	170043559	.	G	.	.	PASS	END=170043576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	170043577	.	C	.	.	PASS	END=170043642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	170115248	.	C	.	.	LowGQX	END=170115437	GT	./.
chr1	170129658	.	G	.	.	LowGQX	END=170129834	GT	./.
chr1	170135642	.	G	.	.	LowGQX	END=170135659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170135660	.	A	.	.	LowGQX	.	GT	./.
chr1	170135661	.	A	.	.	LowGQX	END=170135672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170135673	.	T	.	.	LowGQX	.	GT	./.
chr1	170135674	.	T	.	.	LowGQX	END=170135677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170135678	.	C	.	.	LowGQX	.	GT	./.
chr1	170135679	.	T	.	.	LowGQX	END=170135700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170135701	.	T	.	.	LowGQX	.	GT	./.
chr1	170135702	.	C	.	.	LowGQX	END=170135713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170135714	.	C	.	.	LowGQX	.	GT	./.
chr1	170135715	.	T	.	.	LowGQX	END=170135725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170135726	.	T	.	.	LowGQX	.	GT	./.
chr1	170135727	.	T	.	.	LowGQX	END=170135728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170135729	.	C	.	.	LowGQX	.	GT	./.
chr1	170135730	.	A	.	.	LowGQX	END=170135738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170135739	.	G	.	.	LowGQX	.	GT	./.
chr1	170135740	.	A	.	.	LowGQX	END=170135767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170135768	.	C	.	.	LowGQX	.	GT	./.
chr1	170135769	.	C	.	.	LowGQX	END=170135773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170135774	.	A	.	.	LowGQX	.	GT	./.
chr1	170135775	.	G	.	.	LowGQX	END=170135781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170135782	.	A	.	.	LowGQX	END=170135846	GT	./.
chr1	170135847	.	C	.	.	LowGQX	END=170135871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170135872	.	T	.	.	LowGQX	.	GT	./.
chr1	170135873	.	C	.	.	LowGQX	END=170135881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170135882	.	G	.	.	LowGQX	.	GT	./.
chr1	170135883	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170135884	.	G	.	.	LowGQX	.	GT	./.
chr1	170135885	.	G	.	.	LowGQX	END=170135886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170135887	.	T	.	.	LowGQX	.	GT	./.
chr1	170135888	.	C	.	.	LowGQX	END=170135891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170135892	.	G	.	.	LowGQX	.	GT	./.
chr1	170136626	.	G	.	.	LowGQX	END=170136627	GT	./.
chr1	170136628	.	G	.	.	LowGQX	END=170136826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170136827	.	A	.	.	LowGQX	END=170136898	GT	./.
chr1	170501239	.	T	.	.	PASS	END=170501296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:96:60
chr1	170501297	.	G	.	.	PASS	END=170501347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	170501348	.	G	.	.	PASS	END=170501384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	170501385	.	A	C	1571.99	PASS	DP=55;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=28.58;SB=-528.51	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,55:55:99:1605,123,0:60:99:1.000
chr1	170501386	.	T	.	.	PASS	END=170501400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	170501401	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:69:60
chr1	170501402	.	T	.	.	PASS	END=170501426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	170501427	.	T	.	.	PASS	END=170501434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	170501435	.	T	.	.	PASS	END=170501438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	170501439	.	T	.	.	PASS	END=170501445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	170501446	.	T	.	.	PASS	END=170501455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	170501456	.	C	.	.	PASS	END=170501457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	170501458	.	T	.	.	PASS	END=170501460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	170501461	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:63:60
chr1	170501462	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:24:60
chr1	170501463	.	C	.	.	PASS	END=170501466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	170501467	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:60
chr1	170501468	.	G	.	.	PASS	END=170501469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	170501470	.	G	.	.	PASS	END=170501473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	170501474	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:45:60
chr1	170501475	.	A	.	.	PASS	END=170501476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	170502605	.	G	.	.	LowGQX	END=170502792	GT	./.
chr1	170508300	.	A	.	.	PASS	END=170508334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	170508335	.	A	.	.	PASS	END=170508364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	170508365	.	C	.	.	PASS	END=170508419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	170508420	.	T	.	.	PASS	END=170508471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr1	170508472	.	T	.	.	PASS	END=170508596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr1	170508597	.	T	.	.	PASS	END=170508639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	170508640	.	T	.	.	PASS	END=170508737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	170508738	.	G	.	.	PASS	END=170508759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	170511581	.	C	.	.	PASS	END=170511603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	170511604	.	T	C	368.25	PASS	BaseQRankSum=0.505;DP=52;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=5.8392;MQ=60;MQ0=0;MQRankSum=-1.353;QD=7.08;ReadPosRankSum=0.384;SB=-132.85	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:37,15:52:99:398,0,951:60:99:0.288
chr1	170511605	.	C	.	.	PASS	END=170511653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:82:60
chr1	170511654	.	G	.	.	PASS	END=170511725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	170511726	.	G	.	.	PASS	END=170511754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	170511755	.	A	.	.	PASS	END=170511760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	170511761	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:59:60
chr1	170511762	.	T	.	.	PASS	END=170511774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	170511775	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:46:60
chr1	170511776	.	C	.	.	PASS	END=170511784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	170513795	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:72:60
chr1	170513796	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:33:60
chr1	170513797	.	A	.	.	PASS	END=170513817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	170513818	.	T	.	.	PASS	END=170513826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	170513827	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:62:60
chr1	170513828	.	A	.	.	PASS	END=170513856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	170513857	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:58:60
chr1	170513858	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:99:60
chr1	170513859	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:61:60
chr1	170513860	.	A	.	.	PASS	END=170513925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:84:60
chr1	170513926	.	C	.	.	PASS	END=170513935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	170513936	.	A	.	.	PASS	END=170513973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:85:60
chr1	170513974	.	A	.	.	PASS	END=170513984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	170513985	.	C	.	.	PASS	END=170513990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	170521105	.	A	.	.	LowGQX	END=170521120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:59
chr1	170521121	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:59
chr1	170521122	.	A	.	.	LowGQX	END=170521125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:59
chr1	170521126	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:59
chr1	170521127	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:59
chr1	170521128	.	G	.	.	PASS	END=170521129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:59
chr1	170521130	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	170521131	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:7:60
chr1	170521132	.	C	.	.	PASS	END=170521133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	170521134	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:66:60
chr1	170521135	.	T	.	.	PASS	END=170521146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	170521147	.	T	.	.	PASS	END=170521179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	170521180	.	A	.	.	PASS	END=170521195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	170521196	.	A	.	.	PASS	END=170521202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	170521203	.	A	.	.	PASS	END=170521220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	170521221	.	A	.	.	PASS	END=170521248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	170521249	.	T	.	.	PASS	END=170521375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	170521376	.	G	A	2993.22	PASS	BaseQRankSum=3.350;DP=256;Dels=0.00;FS=5.381;HRun=2;HaplotypeScore=21.8491;MQ=60;MQ0=0;MQRankSum=-0.855;QD=11.69;ReadPosRankSum=-0.759;SB=-1282.71	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:141,114:255:99:3023,0,3553:60:99:0.447
chr1	170521377	.	A	.	.	PASS	END=170521473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:250:99:60
chr1	170521474	.	A	.	.	PASS	END=170521504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:318:99:60
chr1	170521505	.	G	.	.	PASS	END=170521581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:321:99:60
chr1	170521582	.	T	.	.	PASS	END=170521630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr1	170521631	.	G	.	.	PASS	END=170521649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	170521650	.	T	G	2542.65	PASS	BaseQRankSum=-2.378;DP=186;Dels=0.00;FS=7.432;HRun=0;HaplotypeScore=4.8396;MQ=60;MQ0=0;MQRankSum=0.192;QD=13.67;ReadPosRankSum=-0.486;SB=-1139.87	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:96,90:186:99:2573,0,2851:60:99:0.484
chr1	170521651	.	T	.	.	PASS	END=170521675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	170521676	.	T	.	.	PASS	END=170521991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	170521992	.	T	.	.	PASS	END=170522085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	170522086	.	T	.	.	PASS	END=170522105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	170522106	.	T	.	.	PASS	END=170522136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	170522137	.	T	C	1541.07	PASS	BaseQRankSum=-2.024;DP=115;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=11.4354;MQ=60;MQ0=0;MQRankSum=0.053;QD=13.40;ReadPosRankSum=-0.222;SB=-751.93	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:51,64:115:99:1571,0,1323:60:99:0.557
chr1	170522138	.	G	.	.	PASS	END=170522256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	170522257	.	A	.	.	PASS	END=170522318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	170522319	.	A	.	.	PASS	END=170522387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	170522388	.	A	.	.	PASS	END=170522546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	170522547	.	A	.	.	PASS	END=170522666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	170522667	.	T	A	2089.08	PASS	BaseQRankSum=3.101;DP=157;Dels=0.00;FS=20.608;HRun=7;HaplotypeScore=17.3104;MQ=60;MQ0=0;MQRankSum=0.190;QD=13.31;ReadPosRankSum=-0.292;SB=-951.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:68,89:157:99:2119,0,1552:60:99:0.567
chr1	170522668	.	A	.	.	PASS	END=170522697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	170522698	.	C	.	.	PASS	END=170522735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	170522736	.	A	.	.	PASS	END=170522866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	170522867	.	C	.	.	PASS	END=170522884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	170522885	.	T	.	.	PASS	END=170522982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	170522983	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:112:99:60
chr1	170633309	.	G	.	.	PASS	END=170633310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	170633311	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:51:60
chr1	170633312	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:60
chr1	170633313	.	T	.	.	PASS	END=170633316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	170633317	.	T	.	.	PASS	END=170633319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	170633320	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:19:60
chr1	170633321	.	G	.	.	PASS	END=170633325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	170633326	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:39:60
chr1	170633327	.	A	.	.	PASS	END=170633332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	170633333	.	G	.	.	PASS	END=170633335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	170633336	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:48:60
chr1	170633337	.	G	.	.	PASS	END=170633343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	170633344	.	A	.	.	PASS	END=170633347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:63:60
chr1	170633348	.	G	.	.	PASS	END=170633356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	170633357	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:69:60
chr1	170633358	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:90:60
chr1	170633359	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:45:27:60
chr1	170633360	.	A	.	.	PASS	END=170633362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	170633363	.	A	.	.	PASS	END=170633364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:72:60
chr1	170633365	.	C	.	.	PASS	END=170633368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	170633369	.	A	.	.	PASS	END=170633380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:72:60
chr1	170633381	.	G	.	.	PASS	END=170633420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	170633421	.	G	.	.	PASS	END=170633553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:96:60
chr1	170633554	.	G	.	.	PASS	END=170633570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	170633571	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:66:60
chr1	170633572	.	C	.	.	PASS	END=170633595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	170633596	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:60
chr1	170633597	.	G	.	.	PASS	END=170633605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	170633606	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:51:60
chr1	170633607	.	G	.	.	PASS	END=170633616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	170633617	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:60:60
chr1	170633618	.	G	.	.	PASS	END=170633628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	170633629	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:54:60
chr1	170633630	.	G	.	.	PASS	END=170633647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	170633648	.	G	.	.	PASS	END=170633651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	170688816	.	G	.	.	PASS	END=170688819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	170688820	.	C	.	.	PASS	END=170688849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	170688850	.	A	.	.	PASS	END=170688887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	170688888	.	A	.	.	PASS	END=170688936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	170688937	.	C	.	.	PASS	END=170688973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	170688974	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:45:18:60
chr1	170688975	.	A	.	.	PASS	END=170688980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	170688981	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:60
chr1	170688982	.	T	.	.	PASS	END=170688990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	170688991	.	T	.	.	PASS	END=170689009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	170689010	.	C	.	.	PASS	END=170689012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	170689013	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:33:60
chr1	170689014	.	G	.	.	PASS	END=170689017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	170689018	.	G	.	.	PASS	END=170689032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	170689033	.	G	.	.	PASS	END=170689043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	170689044	.	T	.	.	PASS	END=170689062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	170689063	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:15:60
chr1	170689064	.	T	.	.	PASS	END=170689080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	170689081	.	C	.	.	PASS	END=170689091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	170689092	.	C	.	.	PASS	END=170689093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	170695310	.	T	.	.	PASS	END=170695341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:87:60
chr1	170695342	.	C	.	.	PASS	END=170695471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	170695472	.	C	.	.	PASS	END=170695484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	170695485	.	C	.	.	PASS	END=170695502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr1	170695503	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:63:60
chr1	170695504	.	C	.	.	PASS	END=170695539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	170695540	.	C	.	.	PASS	END=170695549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	170695550	.	A	.	.	PASS	END=170695558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	170695559	.	C	.	.	PASS	END=170695564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	170695565	.	C	.	.	PASS	END=170695571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	170695572	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	170695573	.	A	.	.	PASS	END=170695574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	170695575	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	170695576	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	170695577	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:2:60
chr1	170695578	.	C	.	.	LowGQX	END=170695579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	170695580	.	C	.	.	PASS	END=170695582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	170695583	.	G	.	.	LowGQX	END=170695584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	170695585	.	T	.	.	PASS	END=170695590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	170695591	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	170695592	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	170695593	.	G	.	.	LowGQX	END=170695594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	170699355	.	G	.	.	PASS	END=170699357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	170699358	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:55:60
chr1	170699359	.	T	.	.	PASS	END=170699369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	170699370	.	T	.	.	PASS	END=170699410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	170699411	.	A	.	.	PASS	END=170699475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	170699476	.	A	.	.	PASS	END=170699510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	170699511	.	A	.	.	PASS	END=170699518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	170699519	.	T	.	.	PASS	END=170699523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	170705138	.	T	.	.	PASS	END=170705177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	170705178	.	T	.	.	PASS	END=170705237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	170705238	.	G	.	.	PASS	END=170705319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr1	170705320	.	T	.	.	PASS	END=170705376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	170705377	.	C	.	.	PASS	END=170705378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	170914601	.	G	.	.	LowGQX	END=170914760	GT	./.
chr1	170916642	.	T	.	.	LowGQX	END=170916741	GT	./.
chr1	170927592	.	T	.	.	LowGQX	END=170927602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170927603	.	C	.	.	LowGQX	END=170927691	GT	./.
chr1	170928601	.	A	.	.	LowGQX	END=170928740	GT	./.
chr1	170931025	.	T	.	.	LowGQX	END=170931178	GT	./.
chr1	170934290	.	A	.	.	LowGQX	END=170934318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170934319	.	A	.	.	LowGQX	END=170934398	GT	./.
chr1	170940887	.	A	.	.	LowGQX	END=170940931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170940932	.	T	.	.	LowGQX	END=170941026	GT	./.
chr1	170952561	.	A	.	.	LowGQX	END=170952677	GT	./.
chr1	170955700	.	A	.	.	LowGQX	END=170955853	GT	./.
chr1	170958994	.	A	.	.	LowGQX	END=170959146	GT	./.
chr1	170961303	.	A	.	.	LowGQX	END=170961305	GT	./.
chr1	170961306	.	A	.	.	LowGQX	END=170961313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961314	.	A	.	.	LowGQX	.	GT	./.
chr1	170961315	.	C	.	.	LowGQX	END=170961316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961317	.	G	.	.	LowGQX	.	GT	./.
chr1	170961318	.	A	.	.	LowGQX	END=170961322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961323	.	G	.	.	LowGQX	.	GT	./.
chr1	170961324	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961325	.	A	.	.	LowGQX	.	GT	./.
chr1	170961326	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961327	.	G	.	.	LowGQX	END=170961330	GT	./.
chr1	170961331	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961332	.	A	.	.	LowGQX	.	GT	./.
chr1	170961333	.	T	.	.	LowGQX	END=170961334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961335	.	T	.	.	LowGQX	END=170961336	GT	./.
chr1	170961337	.	C	.	.	LowGQX	END=170961341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961342	.	G	.	.	LowGQX	END=170961343	GT	./.
chr1	170961344	.	G	.	.	LowGQX	END=170961345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961346	.	G	.	.	LowGQX	END=170961347	GT	./.
chr1	170961348	.	G	.	.	LowGQX	END=170961350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961351	.	G	.	.	LowGQX	END=170961353	GT	./.
chr1	170961354	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961355	.	C	.	.	LowGQX	.	GT	./.
chr1	170961356	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961357	.	C	.	.	LowGQX	.	GT	./.
chr1	170961358	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961359	.	C	.	.	LowGQX	.	GT	./.
chr1	170961360	.	G	.	.	LowGQX	END=170961361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961362	.	G	.	.	LowGQX	END=170961363	GT	./.
chr1	170961364	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961365	.	G	.	.	LowGQX	.	GT	./.
chr1	170961366	.	A	.	.	LowGQX	END=170961367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961368	.	G	.	.	LowGQX	.	GT	./.
chr1	170961369	.	A	.	.	LowGQX	END=170961371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961372	.	A	.	.	LowGQX	.	GT	./.
chr1	170961373	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961374	.	C	.	.	LowGQX	.	GT	./.
chr1	170961375	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961376	.	T	.	.	LowGQX	.	GT	./.
chr1	170961377	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961378	.	T	.	.	LowGQX	.	GT	./.
chr1	170961379	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961380	.	G	.	.	LowGQX	.	GT	./.
chr1	170961381	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961382	.	T	.	.	LowGQX	.	GT	./.
chr1	170961383	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961384	.	C	.	.	LowGQX	.	GT	./.
chr1	170961385	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961386	.	G	.	.	LowGQX	.	GT	./.
chr1	170961387	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961388	.	A	.	.	LowGQX	.	GT	./.
chr1	170961389	.	A	.	.	LowGQX	END=170961391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961392	.	A	.	.	LowGQX	.	GT	./.
chr1	170961393	.	A	.	.	LowGQX	END=170961394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961395	.	G	.	.	LowGQX	.	GT	./.
chr1	170961396	.	C	.	.	LowGQX	END=170961401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961402	.	G	.	.	LowGQX	END=170961404	GT	./.
chr1	170961405	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961406	.	T	.	.	LowGQX	.	GT	./.
chr1	170961407	.	G	.	.	LowGQX	END=170961409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961410	.	G	.	.	LowGQX	.	GT	./.
chr1	170961411	.	G	.	.	LowGQX	END=170961416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961417	.	G	.	.	LowGQX	.	GT	./.
chr1	170961418	.	T	.	.	LowGQX	END=170961419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961420	.	A	.	.	LowGQX	.	GT	./.
chr1	170961421	.	C	.	.	LowGQX	END=170961423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170961424	.	A	.	.	LowGQX	END=170961472	GT	./.
chr1	170964528	.	A	.	.	LowGQX	END=170964674	GT	./.
chr1	170965646	.	A	.	.	LowGQX	END=170965662	GT	./.
chr1	170965663	.	C	.	.	LowGQX	END=170965754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170965755	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	170965756	.	T	.	.	LowGQX	END=170965787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	170967293	.	A	.	.	LowGQX	END=170967543	GT	./.
chr1	170983257	.	G	.	.	LowGQX	END=170983395	GT	./.
chr1	170984104	.	C	.	.	LowGQX	END=170984203	GT	./.
chr1	170985303	.	G	.	.	LowGQX	END=170985334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170985335	.	T	.	.	LowGQX	.	GT	./.
chr1	170985336	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170985337	.	C	.	.	LowGQX	.	GT	./.
chr1	170985338	.	T	.	.	LowGQX	END=170985379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170985380	.	C	.	.	LowGQX	.	GT	./.
chr1	170985381	.	C	.	.	LowGQX	END=170985418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170985419	.	A	.	.	LowGQX	.	GT	./.
chr1	170985420	.	A	.	.	LowGQX	END=170985477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170993505	.	T	.	.	LowGQX	END=170993506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	170993507	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	170993508	.	C	.	.	LowGQX	END=170993510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	170993511	.	C	.	.	LowGQX	.	GT	./.
chr1	170993512	.	A	.	.	LowGQX	END=170993516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	170993517	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	170993518	.	G	.	.	LowGQX	END=170993520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	170993521	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	170993522	.	T	.	.	LowGQX	END=170993526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	170993527	.	C	.	.	LowGQX	.	GT	./.
chr1	170993528	.	T	.	.	LowGQX	END=170993532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	170993533	.	C	.	.	LowGQX	.	GT	./.
chr1	170993534	.	A	.	.	LowGQX	END=170993537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	170993538	.	T	.	.	LowGQX	.	GT	./.
chr1	170993539	.	A	.	.	LowGQX	END=170993549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	170993550	.	T	.	.	LowGQX	.	GT	./.
chr1	170993551	.	C	.	.	LowGQX	END=170993556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	170993557	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	170993558	.	T	.	.	LowGQX	END=170993562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	170993563	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	170993564	.	T	.	.	LowGQX	END=170993570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	170993571	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	170993572	.	T	.	.	LowGQX	END=170993579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	170993580	.	A	.	.	LowGQX	.	GT	./.
chr1	170993581	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	170993582	.	T	.	.	LowGQX	END=170993592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	170993593	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	170993594	.	T	.	.	LowGQX	END=170993609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	170993610	.	G	.	.	LowGQX	END=170993688	GT	./.
chr1	170993789	.	G	.	.	LowGQX	END=170993906	GT	./.
chr1	170994458	.	G	.	.	LowGQX	END=170994561	GT	./.
chr1	171031254	.	A	.	.	LowGQX	END=171031353	GT	./.
chr1	171033239	.	G	.	.	LowGQX	END=171033300	GT	./.
chr1	171033301	.	T	.	.	LowGQX	END=171033359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171033360	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	171033361	.	A	.	.	LowGQX	END=171033450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171033451	.	T	.	.	LowGQX	END=171033481	GT	./.
chr1	171061749	.	T	.	.	PASS	END=171061837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	171061838	.	T	.	.	PASS	END=171061851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	171061852	.	T	.	.	PASS	END=171061975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	171061976	.	G	.	.	PASS	END=171061982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	171070262	.	G	.	.	LowGQX	END=171070361	GT	./.
chr1	171070799	.	C	.	.	LowGQX	END=171070843	GT	./.
chr1	171070844	.	T	.	.	LowGQX	END=171070849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171070850	.	A	.	.	LowGQX	.	GT	./.
chr1	171070851	.	C	.	.	LowGQX	END=171070854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171070855	.	C	.	.	LowGQX	.	GT	./.
chr1	171070856	.	T	.	.	LowGQX	END=171070858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171070859	.	G	.	.	LowGQX	.	GT	./.
chr1	171070860	.	G	.	.	LowGQX	END=171070861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171070862	.	C	.	.	LowGQX	.	GT	./.
chr1	171070863	.	A	.	.	LowGQX	END=171070881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171070882	.	C	.	.	LowGQX	.	GT	./.
chr1	171070883	.	C	.	.	LowGQX	END=171070886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171070887	.	A	.	.	LowGQX	.	GT	./.
chr1	171070888	.	T	.	.	LowGQX	END=171070925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171070926	.	A	.	.	LowGQX	.	GT	./.
chr1	171070927	.	C	.	.	LowGQX	END=171070945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171070946	.	C	.	.	LowGQX	END=171070947	GT	./.
chr1	171070948	.	C	.	.	LowGQX	END=171070955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171070956	.	A	.	.	LowGQX	.	GT	./.
chr1	171070957	.	G	.	.	LowGQX	END=171070958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171072875	.	T	.	.	PASS	END=171072903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr1	171072904	.	A	.	.	PASS	END=171072929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:93:60
chr1	171072930	.	A	.	.	PASS	END=171073066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	171073067	.	A	.	.	PASS	END=171073082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	171073083	.	A	.	.	PASS	END=171073126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	171073127	.	C	.	.	PASS	END=171073146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	171073147	.	T	.	.	PASS	END=171073165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	171076765	.	A	.	.	PASS	END=171076801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	171076802	.	T	.	.	PASS	END=171076818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	171076819	.	T	.	.	PASS	END=171076860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	171076861	.	G	.	.	PASS	END=171076969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	171076970	.	C	.	.	PASS	END=171077022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	171077023	.	G	.	.	PASS	END=171077029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	171077169	.	T	.	.	PASS	END=171077209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	171077210	.	T	.	.	PASS	END=171077286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	171077287	.	A	.	.	PASS	END=171077333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	171077334	.	C	.	.	PASS	END=171077360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	171077361	.	A	.	.	PASS	END=171077368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	171077369	.	C	.	.	PASS	END=171077377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	171077378	.	T	.	.	PASS	END=171077390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	171077391	.	C	.	.	PASS	END=171077403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	171077404	.	G	.	.	PASS	END=171077413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	171079888	.	T	.	.	PASS	END=171079999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	171080000	.	C	.	.	PASS	END=171080079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:249:99:60
chr1	171080080	.	G	A	3600.67	PASS	BaseQRankSum=3.557;DP=304;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=18.0437;MQ=60;MQ0=0;MQRankSum=0.647;QD=11.84;ReadPosRankSum=-0.993;SB=-1942.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:165,138:304:99:3601,0,4109:60:99:0.455
chr1	171080081	.	T	.	.	PASS	END=171080154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr1	171080155	.	C	.	.	PASS	END=171080189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	171083096	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	171083097	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	171083098	.	C	.	.	LowGQX	END=171083100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	171083101	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	171083102	.	A	.	.	LowGQX	END=171083103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	171083104	.	G	.	.	LowGQX	END=171083105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	171083106	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	171083107	.	A	.	.	LowGQX	END=171083108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	171083109	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:60
chr1	171083110	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	171083111	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	171083112	.	T	.	.	LowGQX	END=171083117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	171083118	.	T	.	.	LowGQX	END=171083120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	171083121	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	171083122	.	A	.	.	LowGQX	END=171083124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	171083125	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	171083126	.	T	.	.	LowGQX	END=171083127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr1	171083128	.	G	.	25.38	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:1.29:60:1
chr1	171083129	.	T	.	.	LowGQX	END=171083132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	171083133	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	171083134	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	171083135	.	T	.	.	PASS	END=171083137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	171083138	.	T	.	.	PASS	END=171083147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	171083148	.	G	.	.	PASS	END=171083165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	171083166	.	G	.	.	PASS	END=171083187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	171083188	.	C	.	.	PASS	END=171083197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr1	171083198	.	G	.	.	PASS	END=171083212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	171083213	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:51:60
chr1	171083214	.	G	.	.	PASS	END=171083253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	171083254	.	T	.	.	PASS	END=171083279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	171083280	.	G	.	.	PASS	END=171083308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	171083309	.	G	.	.	PASS	END=171083416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	171083417	.	A	.	.	PASS	END=171083436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	171083437	.	A	.	.	PASS	END=171083456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	171083457	.	C	.	.	PASS	END=171083468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	171083469	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:76:60
chr1	171083470	.	T	.	.	PASS	END=171083479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	171083480	.	C	.	.	PASS	END=171083485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr1	171083486	.	A	.	.	PASS	END=171083507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	171083508	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:48:60
chr1	171083509	.	C	.	.	PASS	END=171083516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	171083517	.	A	.	.	PASS	END=171083519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	171083520	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:2:60
chr1	171083521	.	T	.	.	PASS	END=171083524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	171083525	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	171083526	.	G	.	.	PASS	END=171083534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	171083535	.	G	.	.	PASS	END=171083536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	171083537	.	T	.	.	LowGQX	END=171083546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	171083547	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	171083548	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	171083549	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	171083550	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	171083551	.	A	.	.	PASS	END=171083553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	171085294	.	G	.	.	PASS	END=171085302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:94:60
chr1	171085303	.	A	.	.	PASS	END=171085427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	171085428	.	T	.	.	PASS	END=171085443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	171085444	.	A	.	.	PASS	END=171085453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	171085454	.	T	.	.	PASS	END=171085471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	171086189	.	T	.	.	PASS	END=171086193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	171086194	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:36:60
chr1	171086195	.	A	.	.	PASS	END=171086197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	171086198	.	G	.	.	PASS	END=171086209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	171086210	.	C	.	.	PASS	END=171086220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	171086221	.	T	.	.	PASS	END=171086223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	171086224	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:96:60
chr1	171086225	.	C	.	.	PASS	END=171086228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	171086229	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:57:60
chr1	171086230	.	C	.	.	PASS	END=171086240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	171086241	.	T	.	.	PASS	END=171086251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	171086252	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:54:60
chr1	171086253	.	G	.	.	PASS	END=171086257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:77:60
chr1	171086258	.	C	.	.	PASS	END=171086269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	171086270	.	T	.	.	PASS	END=171086314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	171086315	.	G	.	.	PASS	END=171086404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	171086405	.	G	.	.	PASS	END=171086415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	171086416	.	A	.	.	PASS	END=171086448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	171086449	.	A	.	.	PASS	END=171086473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	171086474	.	G	.	.	PASS	END=171086488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	171086489	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:36:60
chr1	171086490	.	G	.	.	PASS	END=171086496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	171086497	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:30:60
chr1	171086498	.	T	.	.	PASS	END=171086504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	171086505	.	C	.	.	PASS	END=171086506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	171086507	.	T	.	.	PASS	END=171086531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	171086532	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:3:60
chr1	171086533	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	171086534	.	C	.	.	PASS	END=171086544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	171086545	.	C	.	.	LowGQX	END=171086547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	171086548	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	171086549	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	171086550	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	171086551	.	T	.	.	LowGQX	END=171086559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	171086560	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	171086561	.	T	.	.	LowGQX	END=171086574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	171086575	.	T	.	.	LowGQX	END=171086590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	171086591	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	171086592	.	T	.	.	LowGQX	END=171086625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	171086626	.	A	.	.	LowGQX	END=171086629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	171086630	.	A	.	.	LowGQX	END=171086632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	171086633	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr1	171107340	.	T	.	.	PASS	END=171107384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr1	171107385	.	T	.	.	PASS	END=171107447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	171107448	.	G	.	.	PASS	END=171107542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	171107728	.	G	.	.	PASS	END=171107767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	171107768	.	A	.	.	PASS	END=171107786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	171107787	.	A	.	.	PASS	END=171107822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	171107823	.	C	.	.	PASS	END=171107827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	171112309	.	G	.	.	LowGQX	END=171112340	GT	./.
chr1	171112341	.	A	.	.	LowGQX	END=171112362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171112363	.	T	.	.	LowGQX	.	GT	./.
chr1	171112364	.	T	.	.	LowGQX	END=171112490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171112491	.	A	.	.	LowGQX	END=171112498	GT	./.
chr1	171115495	.	G	.	.	PASS	END=171115497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	171115498	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:48:60
chr1	171115499	.	C	.	.	PASS	END=171115528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	171115529	.	T	.	.	PASS	END=171115550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	171115551	.	T	.	.	PASS	END=171115591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	171115592	.	T	.	.	PASS	END=171115684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	171116703	.	C	.	.	PASS	END=171116753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	171116754	.	G	.	.	PASS	END=171116886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	171116887	.	C	.	.	PASS	END=171116906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	171116907	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:67:99:60
chr1	171118698	.	G	.	.	PASS	END=171118718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	171118719	.	T	.	.	PASS	END=171118732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	171118733	.	T	.	.	PASS	END=171118819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	171118820	.	T	.	.	PASS	END=171118868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	171118869	.	T	.	.	PASS	END=171118882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	171118883	.	T	.	.	PASS	END=171118898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	171121048	.	G	.	.	PASS	END=171121084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	171121085	.	C	.	.	PASS	END=171121188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	171121189	.	A	.	.	PASS	END=171121229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr1	171121230	.	T	.	.	PASS	END=171121369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:268:99:60
chr1	171121370	.	C	.	.	PASS	END=171121404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	171123267	.	C	.	.	PASS	END=171123281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	171123282	.	C	.	.	PASS	END=171123301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	171123302	.	C	T	1165.09	PASS	BaseQRankSum=1.691;DP=80;Dels=0.00;FS=6.093;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=0.255;QD=14.56;ReadPosRankSum=0.323;SB=-623.59	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,42:80:99:1195,0,1032:60:99:0.525
chr1	171123303	.	G	.	.	PASS	END=171123366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	171130171	.	G	.	.	PASS	END=171130191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	171130192	.	T	.	.	PASS	END=171130204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	171130205	.	C	.	.	PASS	END=171130220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	171130221	.	G	.	.	PASS	END=171130227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	171130228	.	T	.	.	PASS	END=171130251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	171130252	.	C	.	.	PASS	END=171130268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	171130269	.	C	.	.	PASS	END=171130296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	171130297	.	A	.	.	PASS	END=171130330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	171130331	.	T	.	.	PASS	END=171130414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	171130415	.	A	.	.	PASS	END=171130521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	171130522	.	T	.	.	PASS	END=171130535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	171154851	.	T	.	.	PASS	END=171154932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:87:60
chr1	171154933	.	G	.	.	PASS	END=171154970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	171154971	.	T	.	.	PASS	END=171154978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	171154979	.	T	.	.	PASS	END=171154986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	171162472	.	A	.	.	PASS	END=171162503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	171162504	.	T	.	.	PASS	END=171162616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	171162617	.	G	.	.	PASS	END=171162649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	171162650	.	T	.	.	PASS	END=171162664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	171162665	.	A	.	.	PASS	END=171162671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	171165786	.	A	.	.	PASS	END=171165931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	171165932	.	C	.	.	PASS	END=171165952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	171168483	.	A	.	.	PASS	END=171168490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	171168491	.	A	.	.	PASS	END=171168538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	171168539	.	A	.	.	PASS	END=171168617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	171168618	.	T	.	.	PASS	END=171168629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	171173002	.	A	.	.	PASS	END=171173205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	171174416	.	A	.	.	PASS	END=171174431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	171174432	.	A	.	.	PASS	END=171174458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	171174459	.	G	.	.	PASS	END=171174532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr1	171174533	.	G	.	.	PASS	END=171174587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr1	171174588	.	T	.	.	PASS	END=171174659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	171174660	.	T	.	.	PASS	END=171174767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	171174768	.	T	.	.	PASS	END=171174775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	171176844	.	T	.	.	PASS	END=171176859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	171176860	.	T	.	.	PASS	END=171176943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	171177931	.	A	.	.	PASS	END=171177947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	171177948	.	G	.	.	PASS	END=171178029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	171178030	.	C	.	.	PASS	END=171178075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	171178076	.	C	.	.	PASS	END=171178094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	171227185	.	T	.	.	PASS	END=171227205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	171227206	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:62:60
chr1	171227207	.	T	.	.	PASS	END=171227215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	171227216	.	T	C	666.70	PASS	BaseQRankSum=2.258;DP=50;Dels=0.00;FS=4.112;HRun=0;HaplotypeScore=5.7319;MQ=60;MQ0=0;MQRankSum=0.798;QD=13.33;ReadPosRankSum=1.285;SB=-254.33	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:27,23:50:99:697,0,583:60:99:0.460
chr1	171227217	.	G	.	.	PASS	END=171227289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	171227290	.	C	.	.	PASS	END=171227323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	171227324	.	G	.	.	PASS	END=171227351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	171227352	.	A	.	.	PASS	END=171227360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:72:60
chr1	171236680	.	A	.	.	PASS	END=171236707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	171236708	.	T	.	.	PASS	END=171236726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	171236727	.	T	.	.	PASS	END=171236856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:273:99:60
chr1	171236857	.	A	.	.	PASS	END=171236872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	171244483	.	A	.	.	PASS	END=171244589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	171244590	.	G	.	.	PASS	END=171244639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	171244640	.	C	.	.	PASS	END=171244649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	171247866	.	A	.	.	PASS	END=171247884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	171247885	.	G	.	.	PASS	END=171247916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:88:60
chr1	171247917	.	T	.	.	PASS	END=171247990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	171247991	.	C	.	.	PASS	END=171248012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	171249923	.	A	.	.	PASS	END=171249939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	171249940	.	A	.	.	PASS	END=171249978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	171249979	.	G	.	.	PASS	END=171250054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	171250055	.	C	.	.	PASS	END=171250114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	171250115	.	C	.	.	PASS	END=171250126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	171251115	.	A	.	.	PASS	END=171251140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	171251141	.	A	.	.	PASS	END=171251161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:257:99:60
chr1	171251162	.	C	.	.	PASS	END=171251295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:303:99:60
chr1	171251296	.	C	.	.	PASS	END=171251316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr1	171251317	.	T	.	.	PASS	END=171251362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	171251363	.	T	.	.	PASS	END=171251431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	171251432	.	A	.	.	PASS	END=171251474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	171252211	.	C	.	.	PASS	END=171252213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	171252214	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:14:60
chr1	171252215	.	T	.	.	PASS	END=171252225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	171252226	.	G	.	.	PASS	END=171252245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:60
chr1	171252246	.	T	.	.	PASS	END=171252280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr1	171252281	.	A	.	.	PASS	END=171252282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	171252283	.	G	.	.	PASS	END=171252285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:57:60
chr1	171252286	.	T	.	.	PASS	END=171252297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	171252298	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:63:60
chr1	171252299	.	A	.	.	PASS	END=171252334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	171252335	.	G	.	.	PASS	END=171252337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	171252338	.	A	.	.	PASS	END=171252346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	171252347	.	G	.	.	PASS	END=171252349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:57:60
chr1	171252350	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:51:60
chr1	171252351	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:75:60
chr1	171252352	.	G	.	.	PASS	END=171252354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr1	171252355	.	G	.	.	PASS	END=171252356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:45:60
chr1	171252357	.	T	.	.	PASS	END=171252359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	171252360	.	G	.	.	PASS	END=171252362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:51:60
chr1	171252363	.	A	.	.	PASS	END=171252365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	171252366	.	T	.	.	PASS	END=171252367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	171252368	.	C	.	.	PASS	END=171252369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	171254339	.	A	.	.	PASS	END=171254352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	171254353	.	C	.	.	PASS	END=171254378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	171254379	.	A	.	.	PASS	END=171254451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	171254452	.	T	.	.	PASS	END=171254522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:245:99:60
chr1	171254523	.	A	.	.	PASS	END=171254556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	171254557	.	G	.	.	PASS	END=171254685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	171288963	.	C	.	.	PASS	END=171289005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:81:60
chr1	171289006	.	C	.	.	PASS	END=171289098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	171292131	.	C	.	.	PASS	END=171292159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	171292160	.	G	.	.	PASS	END=171292176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	171292177	.	A	.	.	PASS	END=171292305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	171292306	.	A	.	.	PASS	END=171292322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	171292323	.	C	.	.	PASS	END=171292333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	171293275	.	A	.	.	PASS	END=171293287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	171293288	.	C	.	.	PASS	END=171293322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	171293323	.	G	.	.	PASS	END=171293395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	171293396	.	T	.	.	PASS	END=171293435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	171293436	.	C	.	.	PASS	END=171293441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	171300777	.	A	.	.	PASS	END=171300811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	171300812	.	G	.	.	PASS	END=171300863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	171300864	.	T	.	.	PASS	END=171300921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	171300922	.	G	.	.	PASS	END=171300923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	171301846	.	A	.	.	PASS	END=171301877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	171301878	.	G	.	.	PASS	END=171302003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	171302004	.	A	.	.	PASS	END=171302036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	171302037	.	A	.	.	PASS	END=171302049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	171303548	.	A	.	.	PASS	END=171303648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	171303649	.	T	.	.	PASS	END=171303738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	171303739	.	A	.	.	PASS	END=171303805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	171303806	.	A	.	.	PASS	END=171303876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	171303877	.	A	.	.	PASS	END=171303904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	171306423	.	T	.	.	PASS	END=171306498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	171306499	.	C	.	.	PASS	END=171306547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	171306548	.	G	.	.	PASS	END=171306578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	171306579	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:126:99:60
chr1	171310550	.	A	.	.	PASS	END=171310572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	171310573	.	C	.	.	PASS	END=171310662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	171310663	.	T	.	.	PASS	END=171310695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	171310696	.	A	.	.	PASS	END=171310735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	171310736	.	T	.	.	PASS	END=171310804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	171310805	.	G	.	.	PASS	END=171310960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	171310961	.	A	.	.	PASS	END=171310980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	171481227	.	A	.	.	LowGQX	END=171481339	GT	./.
chr1	171481380	.	T	.	.	LowGQX	END=171481479	GT	./.
chr1	171482133	.	G	.	.	LowGQX	END=171482273	GT	./.
chr1	171482274	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171482275	.	G	.	.	LowGQX	.	GT	./.
chr1	171482276	.	G	.	.	LowGQX	END=171482277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171482278	.	G	.	.	LowGQX	.	GT	./.
chr1	171482279	.	G	.	.	LowGQX	END=171482289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171482290	.	A	.	.	LowGQX	.	GT	./.
chr1	171482291	.	A	.	.	LowGQX	END=171482293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171482294	.	G	.	.	LowGQX	.	GT	./.
chr1	171482295	.	C	.	.	LowGQX	END=171482309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171482310	.	A	.	.	LowGQX	.	GT	./.
chr1	171482311	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171482532	.	A	.	.	LowGQX	END=171482631	GT	./.
chr1	171483674	.	G	.	.	LowGQX	END=171483784	GT	./.
chr1	171484872	.	G	.	.	LowGQX	END=171484998	GT	./.
chr1	171486729	.	G	.	.	LowGQX	END=171486953	GT	./.
chr1	171491305	.	C	.	.	LowGQX	END=171491404	GT	./.
chr1	171492359	.	G	.	.	LowGQX	END=171492493	GT	./.
chr1	171492568	.	T	.	.	LowGQX	END=171492667	GT	./.
chr1	171493959	.	G	.	.	LowGQX	END=171494039	GT	./.
chr1	171494040	.	C	.	.	LowGQX	END=171494104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171496907	.	T	.	.	LowGQX	END=171496959	GT	./.
chr1	171496960	.	C	.	.	LowGQX	END=171497006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171501481	.	G	.	.	LowGQX	END=171502100	GT	./.
chr1	171504563	.	G	.	.	LowGQX	END=171504736	GT	./.
chr1	171505167	.	G	.	.	LowGQX	END=171505417	GT	./.
chr1	171506401	.	G	.	.	LowGQX	END=171506612	GT	./.
chr1	171509109	.	G	.	.	LowGQX	END=171509165	GT	./.
chr1	171509166	.	A	.	.	LowGQX	END=171509303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	171509304	.	C	.	.	LowGQX	END=171510108	GT	./.
chr1	171510109	.	T	.	.	LowGQX	END=171510122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171510123	.	G	.	.	LowGQX	.	GT	./.
chr1	171510124	.	G	.	.	LowGQX	END=171510177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	171510178	.	C	.	.	LowGQX	.	GT	./.
chr1	171510179	.	C	.	.	LowGQX	END=171510190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	171510191	.	T	.	.	LowGQX	.	GT	./.
chr1	171510192	.	A	.	.	LowGQX	END=171510206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	171510207	.	G	.	.	LowGQX	.	GT	./.
chr1	171510208	.	C	.	.	LowGQX	END=171510248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	171510249	.	G	.	.	LowGQX	.	GT	./.
chr1	171510250	.	A	.	.	LowGQX	END=171510261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171510262	.	T	.	.	LowGQX	END=171510418	GT	./.
chr1	171510419	.	G	.	.	LowGQX	END=171510603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171510604	.	A	.	.	LowGQX	END=171510963	GT	./.
chr1	171510964	.	G	.	.	LowGQX	END=171510978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171510979	.	C	.	.	LowGQX	END=171510980	GT	./.
chr1	171510981	.	C	.	.	LowGQX	END=171510988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171510989	.	A	.	.	LowGQX	END=171510990	GT	./.
chr1	171510991	.	A	.	.	LowGQX	END=171510993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171510994	.	T	.	.	LowGQX	END=171510996	GT	./.
chr1	171510997	.	T	.	.	LowGQX	END=171511000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511001	.	G	.	.	LowGQX	END=171511002	GT	./.
chr1	171511003	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511004	.	G	.	.	LowGQX	.	GT	./.
chr1	171511005	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511006	.	T	.	.	LowGQX	END=171511007	GT	./.
chr1	171511008	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511009	.	A	.	.	LowGQX	.	GT	./.
chr1	171511010	.	G	.	.	LowGQX	END=171511011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511012	.	A	.	.	LowGQX	.	GT	./.
chr1	171511013	.	C	.	.	LowGQX	END=171511022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511023	.	C	.	.	LowGQX	.	GT	./.
chr1	171511024	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511025	.	C	.	.	LowGQX	.	GT	./.
chr1	171511026	.	T	.	.	LowGQX	END=171511028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511029	.	G	.	.	LowGQX	END=171511030	GT	./.
chr1	171511031	.	G	.	.	LowGQX	END=171511032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511033	.	T	.	.	LowGQX	.	GT	./.
chr1	171511034	.	A	.	.	LowGQX	END=171511037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511038	.	C	.	.	LowGQX	.	GT	./.
chr1	171511039	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	171511040	.	G	.	.	LowGQX	.	GT	./.
chr1	171511041	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511042	.	G	.	.	LowGQX	END=171511044	GT	./.
chr1	171511045	.	T	.	.	LowGQX	END=171511048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511049	.	A	.	.	LowGQX	END=171511051	GT	./.
chr1	171511052	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511053	.	C	.	.	LowGQX	.	GT	./.
chr1	171511054	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511055	.	G	.	.	LowGQX	END=171511056	GT	./.
chr1	171511057	.	T	.	.	LowGQX	END=171511060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511061	.	T	.	.	LowGQX	END=171511062	GT	./.
chr1	171511063	.	T	.	.	LowGQX	END=171511064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511065	.	A	.	.	LowGQX	END=171511068	GT	./.
chr1	171511069	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511070	.	A	.	.	LowGQX	.	GT	./.
chr1	171511071	.	A	.	.	LowGQX	END=171511076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511077	.	C	.	.	LowGQX	.	GT	./.
chr1	171511078	.	A	.	.	LowGQX	END=171511080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511081	.	T	.	.	LowGQX	.	GT	./.
chr1	171511082	.	C	.	.	LowGQX	END=171511083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511084	.	G	.	.	LowGQX	.	GT	./.
chr1	171511085	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511086	.	C	.	.	LowGQX	.	GT	./.
chr1	171511087	.	A	.	.	LowGQX	END=171511088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511089	.	A	.	.	LowGQX	END=171511090	GT	./.
chr1	171511091	.	G	.	.	LowGQX	END=171511095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511096	.	A	.	.	LowGQX	.	GT	./.
chr1	171511097	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	171511098	.	G	.	.	LowGQX	.	GT	./.
chr1	171511099	.	G	.	.	LowGQX	END=171511108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	171511109	.	T	.	.	LowGQX	.	GT	./.
chr1	171511110	.	C	.	.	LowGQX	END=171511111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	171511112	.	G	.	.	LowGQX	.	GT	./.
chr1	171511113	.	A	.	.	LowGQX	END=171511115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511116	.	G	.	.	LowGQX	.	GT	./.
chr1	171511117	.	C	.	.	LowGQX	END=171511119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511120	.	T	.	.	LowGQX	.	GT	./.
chr1	171511121	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511122	.	A	.	.	LowGQX	.	GT	./.
chr1	171511123	.	T	.	.	LowGQX	END=171511125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511126	.	C	.	.	LowGQX	.	GT	./.
chr1	171511127	.	A	.	.	LowGQX	END=171511132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511133	.	A	.	.	LowGQX	.	GT	./.
chr1	171511134	.	G	.	.	LowGQX	END=171511140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511141	.	G	.	.	LowGQX	.	GT	./.
chr1	171511142	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511143	.	G	.	.	LowGQX	END=171511145	GT	./.
chr1	171511146	.	A	.	.	LowGQX	END=171511147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511148	.	G	.	.	LowGQX	.	GT	./.
chr1	171511149	.	A	.	.	LowGQX	END=171511158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511159	.	T	.	.	LowGQX	.	GT	./.
chr1	171511160	.	G	.	.	LowGQX	END=171511162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511163	.	G	.	.	LowGQX	END=171511164	GT	./.
chr1	171511165	.	C	.	.	LowGQX	END=171511172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511173	.	C	.	.	LowGQX	.	GT	./.
chr1	171511174	.	A	.	.	LowGQX	END=171511179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511180	.	A	.	.	LowGQX	.	GT	./.
chr1	171511181	.	G	.	.	LowGQX	END=171511189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511190	.	G	.	.	LowGQX	.	GT	./.
chr1	171511191	.	T	.	.	LowGQX	END=171511221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511222	.	A	.	.	LowGQX	.	GT	./.
chr1	171511223	.	A	.	.	LowGQX	END=171511224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511225	.	T	.	.	LowGQX	.	GT	./.
chr1	171511226	.	G	.	.	LowGQX	END=171511229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511230	.	A	.	.	LowGQX	.	GT	./.
chr1	171511231	.	G	.	.	LowGQX	END=171511245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171511246	.	T	.	.	LowGQX	END=171511368	GT	./.
chr1	171514617	.	G	.	.	LowGQX	END=171514826	GT	./.
chr1	171519224	.	G	.	.	LowGQX	END=171519379	GT	./.
chr1	171526378	.	G	.	.	LowGQX	END=171526479	GT	./.
chr1	171526480	.	G	.	.	LowGQX	END=171526537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171526538	.	T	.	.	LowGQX	.	GT	./.
chr1	171526539	.	C	.	.	LowGQX	END=171526541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171526542	.	T	.	.	LowGQX	.	GT	./.
chr1	171526543	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171526544	.	C	.	.	LowGQX	.	GT	./.
chr1	171526545	.	C	.	.	LowGQX	END=171526552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171526553	.	A	.	.	LowGQX	.	GT	./.
chr1	171526554	.	C	.	.	LowGQX	END=171526556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171526557	.	C	.	.	LowGQX	.	GT	./.
chr1	171526558	.	A	.	.	LowGQX	END=171526559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171526560	.	C	.	.	LowGQX	END=171526655	GT	./.
chr1	171526656	.	C	.	.	LowGQX	END=171526657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171526658	.	G	.	.	LowGQX	END=171526659	GT	./.
chr1	171526660	.	T	.	.	LowGQX	END=171526664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171526665	.	C	.	.	LowGQX	END=171526666	GT	./.
chr1	171526667	.	T	.	.	LowGQX	END=171526669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171526670	.	C	.	.	LowGQX	.	GT	./.
chr1	171526671	.	C	.	.	LowGQX	END=171526673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171526674	.	T	.	.	LowGQX	.	GT	./.
chr1	171526675	.	A	.	.	LowGQX	END=171526678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171526679	.	C	.	.	LowGQX	.	GT	./.
chr1	171526680	.	C	.	.	LowGQX	END=171526684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171526685	.	T	.	.	LowGQX	.	GT	./.
chr1	171526686	.	C	.	.	LowGQX	END=171526689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171526690	.	C	.	.	LowGQX	END=171526691	GT	./.
chr1	171526692	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171526693	.	A	.	.	LowGQX	END=171526694	GT	./.
chr1	171526695	.	C	.	.	LowGQX	END=171526698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171526699	.	A	.	.	LowGQX	END=171526700	GT	./.
chr1	171526701	.	T	.	.	LowGQX	END=171526712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171526713	.	T	.	.	LowGQX	.	GT	./.
chr1	171526714	.	T	.	.	LowGQX	END=171526722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171526723	.	T	.	.	LowGQX	.	GT	./.
chr1	171526724	.	A	.	.	LowGQX	END=171526746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171526747	.	T	.	.	LowGQX	.	GT	./.
chr1	171526748	.	T	.	.	LowGQX	END=171526804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171526805	.	C	.	.	LowGQX	END=171527282	GT	./.
chr1	171530150	.	T	.	.	LowGQX	END=171530249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171535371	.	G	.	.	LowGQX	END=171535560	GT	./.
chr1	171535730	.	G	.	.	LowGQX	END=171535821	GT	./.
chr1	171535822	.	C	.	.	LowGQX	END=171535953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	171535954	.	C	.	.	LowGQX	END=171535982	GT	./.
chr1	171537382	.	A	.	.	LowGQX	END=171537399	GT	./.
chr1	171537400	.	C	.	.	LowGQX	END=171537410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171537411	.	C	.	.	LowGQX	.	GT	./.
chr1	171537412	.	C	.	.	LowGQX	END=171537422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171537423	.	T	.	.	LowGQX	.	GT	./.
chr1	171537424	.	G	.	.	LowGQX	END=171537434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171537435	.	T	.	.	LowGQX	.	GT	./.
chr1	171537436	.	G	.	.	LowGQX	END=171537466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171537467	.	T	.	.	LowGQX	.	GT	./.
chr1	171537468	.	T	.	.	LowGQX	END=171537470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171537471	.	T	.	.	LowGQX	.	GT	./.
chr1	171537472	.	T	.	.	LowGQX	END=171537475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171537476	.	A	.	.	LowGQX	.	GT	./.
chr1	171537477	.	A	.	.	LowGQX	END=171537481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171540458	.	G	.	.	LowGQX	END=171540500	GT	./.
chr1	171540501	.	A	.	.	LowGQX	END=171540560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171544065	.	G	.	.	LowGQX	END=171544246	GT	./.
chr1	171544247	.	C	.	.	LowGQX	END=171544253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171544254	.	A	.	.	LowGQX	.	GT	./.
chr1	171544255	.	G	.	.	LowGQX	END=171544261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171544262	.	T	.	.	LowGQX	.	GT	./.
chr1	171544263	.	A	.	.	LowGQX	END=171544267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171546572	.	G	.	.	LowGQX	END=171546776	GT	./.
chr1	171548492	.	G	.	.	LowGQX	END=171548605	GT	./.
chr1	171548966	.	G	.	.	LowGQX	END=171549029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171549030	.	C	.	.	LowGQX	END=171549103	GT	./.
chr1	171553094	.	G	.	.	LowGQX	END=171553326	GT	./.
chr1	171553557	.	G	.	.	LowGQX	END=171553581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171553582	.	T	.	.	LowGQX	.	GT	./.
chr1	171553583	.	C	.	.	LowGQX	END=171553618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171553619	.	A	.	.	LowGQX	END=171553680	GT	./.
chr1	171556141	.	G	.	.	LowGQX	END=171556360	GT	./.
chr1	171556786	.	G	.	.	LowGQX	END=171556841	GT	./.
chr1	171556842	.	C	.	.	LowGQX	END=171556890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171557457	.	A	.	.	LowGQX	END=171557472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171557473	.	T	.	.	LowGQX	.	GT	./.
chr1	171557474	.	T	.	.	LowGQX	END=171557495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171557496	.	C	.	.	LowGQX	.	GT	./.
chr1	171557497	.	T	.	.	LowGQX	END=171557553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171557554	.	A	.	.	LowGQX	END=171557632	GT	./.
chr1	171557633	.	T	.	.	LowGQX	END=171557685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171558507	.	G	.	.	LowGQX	END=171558744	GT	./.
chr1	171560725	.	G	.	.	LowGQX	.	GT	./.
chr1	171560726	.	G	.	.	LowGQX	END=171560734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171560735	.	A	.	.	LowGQX	END=171560986	GT	./.
chr1	171605014	.	A	.	.	PASS	END=171605016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:96:60
chr1	171605017	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:69:60
chr1	171605018	.	G	.	.	PASS	END=171605041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	171605042	.	T	.	.	PASS	END=171605059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	171605060	.	G	.	.	PASS	END=171605084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	171605085	.	T	.	.	PASS	END=171605124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	171605125	.	C	.	.	PASS	END=171605149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	171605150	.	A	.	.	PASS	END=171605172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	171605173	.	G	.	.	PASS	END=171605252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	171605253	.	T	.	.	PASS	END=171605269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:316:99:60
chr1	171605270	.	T	.	.	PASS	END=171605407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:366:99:60
chr1	171605408	.	A	.	.	PASS	END=171605426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:281:99:60
chr1	171605427	.	C	.	.	PASS	END=171605492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	171605493	.	C	.	.	PASS	END=171605550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	171605551	.	A	.	.	PASS	END=171605581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	171605582	.	C	.	.	PASS	END=171605609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	171605610	.	T	.	.	PASS	END=171605628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	171605629	.	T	.	.	PASS	END=171605647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	171605648	.	T	.	.	PASS	END=171605672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:83:60
chr1	171605673	.	G	.	.	PASS	END=171605686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	171605687	.	A	.	.	PASS	END=171605702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	171605703	.	T	.	.	PASS	END=171605711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	171605712	.	T	.	.	PASS	END=171605715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	171605716	.	G	.	.	PASS	END=171605724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	171605725	.	C	.	.	PASS	END=171605738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	171605739	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	171605740	.	G	.	.	PASS	END=171605746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	171605747	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	171605748	.	A	.	.	LowGQX	END=171605764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	171605765	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	171605766	.	G	.	.	LowGQX	END=171605775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	171605776	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	171605777	.	C	.	.	LowGQX	END=171605780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	171605781	.	A	.	.	LowGQX	END=171605783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	171605784	.	T	.	.	LowGQX	END=171605785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	171605786	.	C	.	.	LowGQX	END=171605790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171605791	.	A	.	.	LowGQX	END=171605893	GT	./.
chr1	171605894	.	T	.	.	LowGQX	END=171605897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171605898	.	T	.	.	LowGQX	.	GT	./.
chr1	171605899	.	C	.	.	LowGQX	END=171605900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171607686	.	A	.	.	PASS	END=171607701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	171607702	.	C	T	5088.71	PASS	BaseQRankSum=0.410;DP=152;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=17.2350;MQ=60;MQ0=0;MQRankSum=-0.593;QD=33.48;ReadPosRankSum=0.547;SB=-1066.68	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,151:152:99:5089,355,0:60:99:0.993
chr1	171607703	.	G	.	.	PASS	END=171607793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	171607794	.	A	.	.	PASS	END=171607827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	171607828	.	C	.	.	PASS	END=171607863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	171607864	.	T	.	.	PASS	END=171607913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	171621097	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:65:60
chr1	171621098	.	C	.	.	PASS	END=171621099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:93:60
chr1	171621100	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:66:60
chr1	171621101	.	G	.	.	PASS	END=171621110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:93:60
chr1	171621111	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:63:60
chr1	171621112	.	T	.	.	PASS	END=171621139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	171621140	.	A	.	.	PASS	END=171621166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:89:60
chr1	171621167	.	C	.	.	PASS	END=171621180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	171621181	.	T	.	.	PASS	END=171621204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	171621205	.	C	.	.	PASS	END=171621331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	171621332	.	A	.	.	PASS	END=171621361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	171621362	.	C	.	.	PASS	END=171621464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	171621465	.	T	.	.	PASS	END=171621498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	171621499	.	G	.	.	PASS	END=171621524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	171621525	.	C	T	4088.52	PASS	BaseQRankSum=-0.497;DP=144;Dels=0.00;FS=4.376;HRun=1;HaplotypeScore=12.4659;MQ=60;MQ0=0;MQRankSum=-0.206;QD=28.39;ReadPosRankSum=-0.472;SB=-1665.55	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,142:144:99:4089,280,0:60:99:0.993
chr1	171621526	.	T	.	.	PASS	END=171621555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	171621556	.	G	.	.	PASS	END=171621597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	171621598	.	T	.	.	PASS	END=171621651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr1	171621652	.	T	.	.	PASS	END=171621738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:247:99:60
chr1	171621739	.	A	.	.	PASS	END=171621761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	171621762	.	T	.	.	PASS	END=171621796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	171621797	.	A	.	.	PASS	END=171621802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	171673611	.	C	.	.	LowGQX	END=171673710	GT	./.
chr1	171675483	.	A	.	.	LowGQX	END=171675582	GT	./.
chr1	171678795	.	A	.	.	LowGQX	END=171678894	GT	./.
chr1	171679802	.	C	.	.	LowGQX	END=171679956	GT	./.
chr1	171688287	.	T	.	.	LowGQX	END=171688386	GT	./.
chr1	171697638	.	T	.	.	LowGQX	END=171697737	GT	./.
chr1	171707472	.	T	.	.	LowGQX	END=171707571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171750817	.	G	.	.	LowGQX	END=171750822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	171750823	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	171750824	.	A	.	.	LowGQX	END=171750927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	171750928	.	T	.	.	LowGQX	END=171750976	GT	./.
chr1	171751106	.	A	.	.	LowGQX	END=171751262	GT	./.
chr1	171752878	.	A	.	.	LowGQX	END=171753082	GT	./.
chr1	171753083	.	G	.	.	LowGQX	END=171753094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171753095	.	C	.	.	LowGQX	.	GT	./.
chr1	171753096	.	C	.	.	LowGQX	END=171753105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171753106	.	T	.	.	LowGQX	.	GT	./.
chr1	171753107	.	C	.	.	LowGQX	END=171753170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	171753171	.	G	.	.	LowGQX	.	GT	./.
chr1	171753172	.	T	.	.	LowGQX	END=171753189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	171753190	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	171753191	.	C	.	.	LowGQX	END=171753470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171753471	.	C	.	.	LowGQX	END=171753641	GT	./.
chr1	171755017	.	A	.	.	LowGQX	END=171755220	GT	./.
chr1	171756873	.	A	.	.	LowGQX	END=171757072	GT	./.
chr1	171759590	.	A	.	.	LowGQX	END=171759593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171759594	.	C	.	.	LowGQX	.	GT	./.
chr1	171759595	.	A	.	.	LowGQX	END=171759614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171759615	.	A	.	.	LowGQX	.	GT	./.
chr1	171759616	.	G	.	.	LowGQX	END=171759621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171759622	.	A	.	.	LowGQX	.	GT	./.
chr1	171759623	.	G	.	.	LowGQX	END=171759626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171759627	.	C	.	.	LowGQX	.	GT	./.
chr1	171759628	.	G	.	.	LowGQX	END=171759651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171759652	.	C	.	.	LowGQX	.	GT	./.
chr1	171759653	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171759654	.	G	.	.	LowGQX	.	GT	./.
chr1	171759655	.	C	.	.	LowGQX	END=171759659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171759660	.	C	.	.	LowGQX	.	GT	./.
chr1	171759661	.	C	.	.	LowGQX	END=171759662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171759663	.	G	.	.	LowGQX	.	GT	./.
chr1	171759664	.	G	.	.	LowGQX	END=171759665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171759666	.	C	.	.	LowGQX	.	GT	./.
chr1	171759667	.	A	.	.	LowGQX	END=171759672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171759673	.	T	.	.	LowGQX	.	GT	./.
chr1	171759674	.	T	.	.	LowGQX	END=171759675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171759676	.	A	.	.	LowGQX	END=171759677	GT	./.
chr1	171759678	.	A	.	.	LowGQX	END=171759690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171759691	.	G	.	.	LowGQX	.	GT	./.
chr1	171759692	.	T	.	.	LowGQX	END=171759699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171759700	.	A	.	.	LowGQX	.	GT	./.
chr1	171759701	.	C	.	.	LowGQX	END=171759707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171759708	.	G	.	.	LowGQX	.	GT	./.
chr1	171759709	.	C	.	.	LowGQX	END=171759715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171759716	.	C	.	.	LowGQX	END=171759758	GT	./.
chr1	171761155	.	A	.	.	LowGQX	END=171761377	GT	./.
chr1	171763534	.	A	.	.	LowGQX	END=171763669	GT	./.
chr1	171765620	.	A	.	.	LowGQX	END=171765790	GT	./.
chr1	171765791	.	C	.	.	LowGQX	END=171765898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171810766	.	G	.	.	PASS	END=171810792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	171810793	.	C	.	.	PASS	END=171810803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	171810804	.	A	.	.	PASS	END=171810805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	171810806	.	C	.	.	PASS	END=171810833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	171810834	.	T	.	.	PASS	END=171810838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	171810839	.	C	.	.	PASS	END=171810957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	171890875	.	T	.	.	LowGQX	.	GT	./.
chr1	171890876	.	T	.	.	LowGQX	END=171890937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171890938	.	T	.	.	LowGQX	END=171890974	GT	./.
chr1	171956795	.	G	.	.	LowGQX	END=171956806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171956807	.	T	.	.	LowGQX	.	GT	./.
chr1	171956808	.	T	.	.	LowGQX	END=171956882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171956883	.	T	.	.	LowGQX	.	GT	./.
chr1	171956884	.	G	.	.	LowGQX	END=171956901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171956902	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	171956903	.	A	.	.	LowGQX	END=171956937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	171956938	.	C	.	.	LowGQX	END=171956945	GT	./.
chr1	171958084	.	G	.	.	LowGQX	END=171958288	GT	./.
chr1	172001541	.	G	.	.	LowGQX	END=172001632	GT	./.
chr1	172001633	.	T	.	.	LowGQX	END=172001636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172001637	.	A	.	.	LowGQX	.	GT	./.
chr1	172001638	.	G	.	.	LowGQX	END=172001640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172002244	.	G	.	.	LowGQX	END=172002375	GT	./.
chr1	172002376	.	A	.	.	LowGQX	END=172002377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172002378	.	C	.	.	LowGQX	.	GT	./.
chr1	172002379	.	C	.	.	LowGQX	END=172002405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172007418	.	A	.	.	LowGQX	END=172007601	GT	./.
chr1	172011148	.	G	.	.	LowGQX	END=172011210	GT	./.
chr1	172011211	.	A	.	.	LowGQX	END=172011213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172011214	.	C	.	.	LowGQX	.	GT	./.
chr1	172011215	.	C	.	.	LowGQX	END=172011222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172011223	.	T	.	.	LowGQX	.	GT	./.
chr1	172011224	.	C	.	.	LowGQX	END=172011229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172011230	.	T	.	.	LowGQX	.	GT	./.
chr1	172011231	.	G	.	.	LowGQX	END=172011238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172011239	.	A	.	.	LowGQX	.	GT	./.
chr1	172011240	.	A	.	.	LowGQX	END=172011245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172011246	.	C	.	.	LowGQX	END=172011247	GT	./.
chr1	172011248	.	T	.	.	LowGQX	END=172011250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172011251	.	T	.	.	LowGQX	END=172011252	GT	./.
chr1	172011253	.	T	.	.	LowGQX	END=172011261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172011262	.	G	.	.	LowGQX	.	GT	./.
chr1	172011263	.	C	.	.	LowGQX	END=172011284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172013509	.	C	.	.	LowGQX	END=172013608	GT	./.
chr1	172017751	.	G	.	.	LowGQX	END=172017890	GT	./.
chr1	172037952	.	T	.	.	LowGQX	END=172038051	GT	./.
chr1	172050957	.	C	.	.	LowGQX	END=172051056	GT	./.
chr1	172061940	.	G	.	.	LowGQX	END=172061975	GT	./.
chr1	172061976	.	G	.	.	LowGQX	END=172062039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172062801	.	T	.	.	LowGQX	END=172062900	GT	./.
chr1	172100314	.	G	.	.	LowGQX	END=172100345	GT	./.
chr1	172100346	.	A	.	.	LowGQX	END=172100361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172100362	.	A	.	.	LowGQX	.	GT	./.
chr1	172100363	.	G	.	.	LowGQX	END=172100381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172100382	.	G	.	.	LowGQX	.	GT	./.
chr1	172100383	.	G	.	.	LowGQX	END=172100392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172100393	.	A	.	.	LowGQX	.	GT	./.
chr1	172100394	.	C	.	.	LowGQX	END=172100414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172100415	.	A	.	.	LowGQX	.	GT	./.
chr1	172100416	.	T	.	.	LowGQX	END=172100428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172100901	.	T	.	.	LowGQX	END=172101000	GT	./.
chr1	172101983	.	T	.	.	LowGQX	END=172102082	GT	./.
chr1	172107938	.	A	.	.	LowGQX	END=172108096	GT	./.
chr1	172113675	.	T	.	.	LowGQX	END=172113784	GT	./.
chr1	172222662	.	C	.	.	LowGQX	END=172222773	GT	./.
chr1	172222774	.	G	.	.	LowGQX	END=172222801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172222802	.	A	.	.	LowGQX	.	GT	./.
chr1	172222803	.	C	.	.	LowGQX	END=172222822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172277867	.	G	.	.	LowGQX	END=172278018	GT	./.
chr1	172292425	.	G	.	.	LowGQX	END=172292518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172292519	.	A	.	.	LowGQX	END=172292524	GT	./.
chr1	172307903	.	G	.	.	LowGQX	END=172308002	GT	./.
chr1	172308141	.	A	.	.	LowGQX	END=172308240	GT	./.
chr1	172348157	.	G	.	.	LowGQX	END=172348322	GT	./.
chr1	172356272	.	G	.	.	LowGQX	END=172356436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172356437	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	172356438	.	G	.	.	LowGQX	END=172356459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172356460	.	C	.	.	LowGQX	END=172356499	GT	./.
chr1	172357712	.	G	.	.	LowGQX	END=172357949	GT	./.
chr1	172376897	.	T	.	.	LowGQX	END=172376996	GT	./.
chr1	172387390	.	A	.	.	LowGQX	END=172387489	GT	./.
chr1	172389934	.	C	.	.	LowGQX	END=172389967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172389968	.	G	.	.	LowGQX	END=172389973	GT	./.
chr1	172389974	.	G	.	.	LowGQX	END=172390081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172390082	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	172390083	.	T	.	.	LowGQX	END=172390086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	172397902	.	A	.	.	LowGQX	END=172398001	GT	./.
chr1	172399404	.	A	.	.	LowGQX	END=172399503	GT	./.
chr1	172400176	.	T	.	.	LowGQX	END=172400196	GT	./.
chr1	172400197	.	C	.	.	LowGQX	END=172400210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172400211	.	A	.	.	LowGQX	.	GT	./.
chr1	172400212	.	C	.	.	LowGQX	END=172400267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172400268	.	A	.	.	LowGQX	.	GT	./.
chr1	172400269	.	A	.	.	LowGQX	END=172400275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172410867	.	A	.	.	LowGQX	END=172411081	GT	./.
chr1	172411082	.	G	.	.	LowGQX	END=172411207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	172411208	.	A	.	.	LowGQX	END=172411764	GT	./.
chr1	172414206	.	C	.	.	LowGQX	END=172414305	GT	./.
chr1	172417577	.	T	.	.	LowGQX	END=172417676	GT	./.
chr1	172422161	.	A	.	.	LowGQX	END=172422329	GT	./.
chr1	172425543	.	C	.	.	LowGQX	END=172425642	GT	./.
chr1	172431246	.	A	.	.	LowGQX	END=172431401	GT	./.
chr1	172434422	.	T	.	.	LowGQX	END=172434521	GT	./.
chr1	172434725	.	T	.	.	LowGQX	END=172434824	GT	./.
chr1	172437587	.	A	.	.	LowGQX	END=172437736	GT	./.
chr1	172501612	.	G	.	.	LowGQX	END=172501686	GT	./.
chr1	172501687	.	G	.	.	LowGQX	END=172501740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172501741	.	C	.	.	LowGQX	.	GT	./.
chr1	172501742	.	C	.	.	LowGQX	END=172501941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172502316	.	G	.	.	LowGQX	END=172502639	GT	./.
chr1	172520650	.	A	.	.	LowGQX	END=172520768	GT	./.
chr1	172522398	.	A	.	.	LowGQX	END=172522512	GT	./.
chr1	172525007	.	A	.	.	LowGQX	END=172525165	GT	./.
chr1	172526418	.	A	.	.	LowGQX	END=172526473	GT	./.
chr1	172526474	.	G	.	.	LowGQX	END=172526539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	172526540	.	T	.	.	LowGQX	END=172526559	GT	./.
chr1	172526782	.	A	.	.	LowGQX	END=172526936	GT	./.
chr1	172538107	.	A	.	.	LowGQX	END=172538284	GT	./.
chr1	172539185	.	A	.	.	LowGQX	END=172539313	GT	./.
chr1	172539731	.	C	.	.	LowGQX	END=172539886	GT	./.
chr1	172543029	.	A	.	.	LowGQX	END=172543188	GT	./.
chr1	172544656	.	A	.	.	LowGQX	END=172544815	GT	./.
chr1	172546640	.	G	.	.	LowGQX	END=172546647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172546648	.	T	.	.	LowGQX	.	GT	./.
chr1	172546649	.	T	.	.	LowGQX	END=172546676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172546677	.	A	.	.	LowGQX	.	GT	./.
chr1	172546678	.	G	.	.	LowGQX	END=172546687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172546688	.	A	.	.	LowGQX	.	GT	./.
chr1	172546689	.	A	.	.	LowGQX	END=172546697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172546698	.	A	.	.	LowGQX	.	GT	./.
chr1	172546699	.	G	.	.	LowGQX	END=172546713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172546714	.	C	.	.	LowGQX	.	GT	./.
chr1	172546715	.	T	.	.	LowGQX	END=172546716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172546717	.	T	.	.	LowGQX	END=172546739	GT	./.
chr1	172546882	.	T	.	.	LowGQX	END=172546968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172546969	.	A	.	.	LowGQX	END=172546981	GT	./.
chr1	172547434	.	A	.	.	LowGQX	END=172547533	GT	./.
chr1	172548270	.	A	.	.	LowGQX	END=172548424	GT	./.
chr1	172554143	.	T	.	.	LowGQX	END=172554212	GT	./.
chr1	172554213	.	A	.	.	LowGQX	END=172554242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172554994	.	A	.	.	LowGQX	END=172555093	GT	./.
chr1	172557898	.	A	.	.	LowGQX	END=172557942	GT	./.
chr1	172557943	.	A	.	.	LowGQX	END=172558034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172558035	.	C	.	2.30	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0:60:0
chr1	172558036	.	G	.	.	LowGQX	END=172558127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172558128	.	T	.	.	LowGQX	.	GT	./.
chr1	172558129	.	T	.	.	LowGQX	END=172558149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172558150	.	T	.	.	LowGQX	END=172558965	GT	./.
chr1	172558966	.	A	.	.	LowGQX	END=172559068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172560118	.	T	.	.	LowGQX	END=172560217	GT	./.
chr1	172569202	.	A	.	.	LowGQX	END=172569361	GT	./.
chr1	172571202	.	A	.	.	LowGQX	END=172571277	GT	./.
chr1	172571278	.	G	.	.	LowGQX	END=172571360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	172571834	.	A	.	.	LowGQX	END=172571962	GT	./.
chr1	172577805	.	T	.	.	LowGQX	END=172577964	GT	./.
chr1	172578954	.	A	.	.	LowGQX	END=172579401	GT	./.
chr1	172628291	.	C	.	.	PASS	END=172628351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	172628352	.	C	.	.	PASS	END=172628484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	172628485	.	A	.	.	PASS	END=172628490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	172628491	.	A	C	29.15	LowGQX;LowQD;SB	BaseQRankSum=-1.489;DP=117;Dels=0.00;FS=67.997;HRun=2;HaplotypeScore=104.9578;MQ=60;MQ0=0;MQRankSum=0.021;QD=0.25;ReadPosRankSum=0.118;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:93,23:117:59.14:59,0,1470:60:29:0.198
chr1	172628492	.	C	.	.	PASS	END=172628496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	172628497	.	A	.	93.79	PASS	DP=115;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:92:115:63.80:60:64
chr1	172628498	.	C	.	.	PASS	END=172628539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:84:60
chr1	172628540	.	C	.	.	PASS	END=172628581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	172628582	.	C	.	.	PASS	END=172628589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	172628590	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:67:60
chr1	172628591	.	C	.	.	PASS	END=172628611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr1	172628612	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:58:60
chr1	172628613	.	T	.	.	PASS	END=172628619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	172628620	.	C	.	.	PASS	END=172628630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	172628631	.	T	.	.	PASS	END=172628645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr1	172628646	.	T	.	.	PASS	END=172628664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	172628665	.	G	.	.	PASS	END=172628677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr1	172628678	.	G	.	.	PASS	END=172628690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	172628691	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:60
chr1	172628692	.	A	.	.	PASS	END=172628696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	172628697	.	T	.	.	PASS	END=172628698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	172628699	.	C	.	.	PASS	END=172628707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	172628708	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	172628709	.	G	.	.	PASS	END=172628712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	172628713	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	172628714	.	G	.	.	PASS	END=172628717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	172628718	.	T	.	.	PASS	END=172628720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	172628721	.	A	.	.	PASS	END=172628725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	172628726	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	172628727	.	C	.	.	PASS	END=172628728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	172628729	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	172628730	.	G	.	.	PASS	END=172628731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	172628732	.	A	.	.	LowGQX	END=172628733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	172628734	.	A	.	.	PASS	END=172628735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	172628736	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	172628737	.	G	.	.	PASS	END=172628738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	172628739	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	172628740	.	A	.	45.04	LowGQX	DP=8;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:8:15.05:60:15
chr1	172629184	.	C	.	.	PASS	END=172629195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	172629196	.	T	.	.	PASS	END=172629245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	172629246	.	G	.	.	PASS	END=172629331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	172633422	.	T	.	.	PASS	END=172633472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	172633473	.	G	.	.	PASS	END=172633581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	172634711	.	G	.	.	PASS	END=172634733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	172634734	.	T	C	4977.84	PASS	DP=167;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=12.3627;MQ=60;MQ0=0;QD=29.81;SB=-2197.35	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,166:167:99:4978,379,0:60:99:1.000
chr1	172634735	.	T	.	.	PASS	END=172634834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	172634835	.	G	.	.	PASS	END=172634879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	172634880	.	T	.	.	PASS	END=172635014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	172635015	.	T	.	.	PASS	END=172635036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	172635037	.	A	.	.	PASS	END=172635158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	172635159	.	G	.	.	PASS	END=172635207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	173010506	.	T	.	.	LowGQX	END=173010569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173010570	.	C	.	.	LowGQX	.	GT	./.
chr1	173010571	.	T	.	.	LowGQX	END=173010580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173010581	.	A	.	.	LowGQX	.	GT	./.
chr1	173010582	.	G	.	.	LowGQX	END=173010588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173010589	.	A	.	.	LowGQX	END=173010770	GT	./.
chr1	173010771	.	A	.	.	LowGQX	END=173010772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173010773	.	G	.	.	LowGQX	.	GT	./.
chr1	173010774	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173010775	.	A	.	.	LowGQX	END=173010776	GT	./.
chr1	173010777	.	C	.	.	LowGQX	END=173010782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173010783	.	C	.	.	LowGQX	END=173010784	GT	./.
chr1	173010785	.	T	.	.	LowGQX	END=173010792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173010793	.	G	.	.	LowGQX	.	GT	./.
chr1	173010794	.	A	.	.	LowGQX	END=173010798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173010799	.	T	.	.	LowGQX	.	GT	./.
chr1	173010800	.	T	.	.	LowGQX	END=173010809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173010810	.	A	.	.	LowGQX	.	GT	./.
chr1	173010811	.	G	.	.	LowGQX	END=173010815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173010816	.	T	.	.	LowGQX	.	GT	./.
chr1	173010817	.	T	.	.	LowGQX	END=173010830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173010831	.	T	.	.	LowGQX	.	GT	./.
chr1	173010832	.	T	.	.	LowGQX	END=173010851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173010852	.	T	.	.	LowGQX	.	GT	./.
chr1	173010853	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173013044	.	A	.	.	LowGQX	END=173013143	GT	./.
chr1	173019880	.	C	.	.	LowGQX	END=173019973	GT	./.
chr1	173019974	.	T	.	.	LowGQX	END=173020060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173020061	.	A	.	.	LowGQX	.	GT	./.
chr1	173020062	.	A	.	.	LowGQX	END=173020102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173155653	.	C	.	.	PASS	END=173155676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	173155677	.	G	.	.	PASS	END=173155723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	173155724	.	A	.	.	PASS	END=173155843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	173155844	.	C	.	.	PASS	END=173155898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	173155899	.	A	.	.	PASS	END=173156005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	173156006	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:122:99:60
chr1	173157635	.	C	.	.	PASS	END=173157663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	173157664	.	A	.	.	PASS	END=173157733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	173157734	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:99:60
chr1	173174401	.	T	.	.	LowGQX	END=173174500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173176161	.	A	.	.	PASS	END=173176186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	173176187	.	G	.	.	PASS	END=173176302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	173176303	.	G	.	.	PASS	END=173176317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	173446535	.	C	.	.	LowGQX	END=173446634	GT	./.
chr1	173450463	.	A	.	.	LowGQX	END=173450623	GT	./.
chr1	173454498	.	A	.	.	LowGQX	END=173454648	GT	./.
chr1	173455392	.	A	.	.	LowGQX	END=173455542	GT	./.
chr1	173456872	.	A	.	.	LowGQX	END=173457004	GT	./.
chr1	173470185	.	C	.	.	LowGQX	END=173470284	GT	./.
chr1	173472386	.	A	.	.	LowGQX	END=173472435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173472436	.	C	.	.	LowGQX	END=173472443	GT	./.
chr1	173472444	.	T	.	.	LowGQX	END=173472448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173472449	.	G	.	.	LowGQX	.	GT	./.
chr1	173472450	.	A	.	.	LowGQX	END=173472485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173474379	.	C	.	.	LowGQX	END=173474478	GT	./.
chr1	173475982	.	T	.	.	LowGQX	END=173475999	GT	./.
chr1	173476000	.	C	.	.	LowGQX	END=173476025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173476026	.	G	.	.	LowGQX	.	GT	./.
chr1	173476027	.	C	.	.	LowGQX	END=173476064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173476065	.	C	.	.	LowGQX	END=173476075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	173476076	.	G	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	173476077	.	A	.	.	LowGQX	END=173476153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	173476154	.	C	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:4:3.01:60:3
chr1	173476155	.	A	.	.	LowGQX	END=173476182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	173478665	.	C	.	.	LowGQX	END=173478674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	173478675	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	173478676	.	A	.	.	LowGQX	END=173478684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	173478685	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	173478686	.	T	.	.	LowGQX	END=173478764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173478765	.	C	.	.	LowGQX	END=173478884	GT	./.
chr1	173486674	.	A	.	.	LowGQX	END=173486845	GT	./.
chr1	173490388	.	T	.	.	LowGQX	END=173490407	GT	./.
chr1	173490408	.	A	.	.	LowGQX	END=173490540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173493106	.	A	.	.	LowGQX	END=173493235	GT	./.
chr1	173493916	.	A	.	.	LowGQX	END=173493917	GT	./.
chr1	173493918	.	C	.	.	LowGQX	END=173493937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173493938	.	C	.	.	LowGQX	.	GT	./.
chr1	173493939	.	A	.	.	LowGQX	END=173493944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173493945	.	A	.	.	LowGQX	.	GT	./.
chr1	173493946	.	T	.	.	LowGQX	END=173493956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173493957	.	T	.	.	LowGQX	.	GT	./.
chr1	173493958	.	C	.	.	LowGQX	END=173493962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173493963	.	A	.	.	LowGQX	.	GT	./.
chr1	173493964	.	C	.	.	LowGQX	END=173493973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173493974	.	T	.	.	LowGQX	.	GT	./.
chr1	173493975	.	G	.	.	LowGQX	END=173493980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173493981	.	T	.	.	LowGQX	.	GT	./.
chr1	173493982	.	T	.	.	LowGQX	END=173494014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173494015	.	T	.	.	LowGQX	.	GT	./.
chr1	173494016	.	G	.	.	LowGQX	END=173494021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173494022	.	T	.	.	LowGQX	.	GT	./.
chr1	173494023	.	C	.	.	LowGQX	END=173494068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173495720	.	G	.	.	LowGQX	END=173495877	GT	./.
chr1	173499042	.	A	.	.	LowGQX	END=173499043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173499044	.	C	.	.	LowGQX	END=173499045	GT	./.
chr1	173499046	.	G	.	.	LowGQX	END=173499140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173499141	.	A	.	.	LowGQX	.	GT	./.
chr1	173499142	.	G	.	.	LowGQX	END=173499192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173499193	.	T	.	.	LowGQX	END=173499195	GT	./.
chr1	173502746	.	A	.	.	LowGQX	END=173502945	GT	./.
chr1	173503551	.	T	.	.	LowGQX	END=173503890	GT	./.
chr1	173504926	.	A	.	.	LowGQX	END=173505136	GT	./.
chr1	173506079	.	A	.	.	LowGQX	END=173506180	GT	./.
chr1	173516826	.	A	.	.	LowGQX	END=173516925	GT	./.
chr1	173517526	.	A	.	.	LowGQX	END=173517714	GT	./.
chr1	173523863	.	A	.	.	LowGQX	.	GT	./.
chr1	173523864	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173523865	.	A	.	.	LowGQX	.	GT	./.
chr1	173523866	.	C	.	.	LowGQX	END=173523878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173523879	.	C	.	.	LowGQX	.	GT	./.
chr1	173523880	.	C	.	.	LowGQX	END=173523897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173523898	.	A	.	.	LowGQX	.	GT	./.
chr1	173523899	.	C	.	.	LowGQX	END=173523906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173523907	.	T	.	.	LowGQX	.	GT	./.
chr1	173523908	.	T	.	.	LowGQX	END=173523930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173523931	.	A	.	.	LowGQX	.	GT	./.
chr1	173523932	.	T	.	.	LowGQX	END=173523934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173523935	.	C	.	.	LowGQX	.	GT	./.
chr1	173523936	.	T	.	.	LowGQX	END=173523947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173523948	.	T	.	.	LowGQX	.	GT	./.
chr1	173523949	.	A	.	.	LowGQX	END=173523962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173526477	.	A	.	.	LowGQX	END=173526666	GT	./.
chr1	173542319	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173542320	.	C	.	.	LowGQX	END=173542321	GT	./.
chr1	173542322	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173542323	.	T	.	.	LowGQX	.	GT	./.
chr1	173542324	.	A	.	.	LowGQX	END=173542325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173542326	.	C	.	.	LowGQX	.	GT	./.
chr1	173542327	.	A	.	.	LowGQX	END=173542345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173542346	.	A	.	.	LowGQX	.	GT	./.
chr1	173542347	.	A	.	.	LowGQX	END=173542358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173542359	.	A	.	.	LowGQX	.	GT	./.
chr1	173542360	.	G	.	.	LowGQX	END=173542366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173542367	.	T	.	.	LowGQX	.	GT	./.
chr1	173542368	.	G	.	.	LowGQX	END=173542371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173542372	.	A	.	.	LowGQX	.	GT	./.
chr1	173542373	.	A	.	.	LowGQX	END=173542374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173542375	.	T	.	.	LowGQX	END=173542466	GT	./.
chr1	173545798	.	A	.	.	LowGQX	END=173545901	GT	./.
chr1	173550984	.	A	.	.	LowGQX	END=173551149	GT	./.
chr1	173552643	.	A	.	.	LowGQX	END=173552763	GT	./.
chr1	173556802	.	A	.	.	LowGQX	END=173556971	GT	./.
chr1	173567041	.	A	.	.	LowGQX	END=173567220	GT	./.
chr1	173569254	.	A	.	.	LowGQX	END=173569358	GT	./.
chr1	173570787	.	A	.	.	LowGQX	END=173570913	GT	./.
chr1	173570914	.	A	.	.	LowGQX	END=173570917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173579270	.	T	.	.	LowGQX	END=173579369	GT	./.
chr1	173593924	.	A	.	.	LowGQX	END=173594066	GT	./.
chr1	173596202	.	A	.	.	LowGQX	END=173596301	GT	./.
chr1	173604660	.	G	.	.	LowGQX	END=173604984	GT	./.
chr1	173605965	.	G	.	.	LowGQX	END=173606175	GT	./.
chr1	173615983	.	A	.	.	LowGQX	END=173616154	GT	./.
chr1	173626422	.	G	.	.	LowGQX	END=173626489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173626490	.	C	.	.	LowGQX	.	GT	./.
chr1	173626491	.	C	.	.	LowGQX	END=173626516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173626517	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	173626518	.	A	.	.	LowGQX	END=173626533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	173626534	.	G	.	.	LowGQX	.	GT	./.
chr1	173626535	.	A	.	.	LowGQX	END=173626563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	173626564	.	G	.	.	LowGQX	END=173626565	GT	./.
chr1	173626566	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173626567	.	A	.	.	LowGQX	.	GT	./.
chr1	173626568	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173626569	.	T	.	.	LowGQX	.	GT	./.
chr1	173626570	.	G	.	.	LowGQX	END=173626573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173626574	.	T	.	.	LowGQX	.	GT	./.
chr1	173626575	.	C	.	.	LowGQX	END=173626576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173626577	.	A	.	.	LowGQX	.	GT	./.
chr1	173626578	.	G	.	.	LowGQX	END=173626581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173627273	.	C	.	.	LowGQX	END=173627420	GT	./.
chr1	173627421	.	C	.	.	LowGQX	END=173627432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173628192	.	T	.	.	LowGQX	END=173628559	GT	./.
chr1	173636798	.	T	.	.	LowGQX	END=173636897	GT	./.
chr1	173638547	.	A	.	.	LowGQX	END=173638646	GT	./.
chr1	173644428	.	A	.	.	LowGQX	END=173644512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173644513	.	A	.	.	LowGQX	END=173644582	GT	./.
chr1	173685142	.	G	.	.	LowGQX	END=173685241	GT	./.
chr1	173702850	.	A	.	.	LowGQX	END=173703521	GT	./.
chr1	173720901	.	A	.	.	LowGQX	END=173720904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173720905	.	A	.	.	LowGQX	.	GT	./.
chr1	173720906	.	A	.	.	LowGQX	END=173720936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173720937	.	C	.	.	LowGQX	END=173720999	GT	./.
chr1	173721000	.	T	.	.	LowGQX	END=173721063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173722350	.	A	.	.	LowGQX	END=173722421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	173722422	.	T	.	.	LowGQX	END=173722449	GT	./.
chr1	173725060	.	A	.	.	LowGQX	END=173725179	GT	./.
chr1	173726113	.	A	.	.	LowGQX	END=173726300	GT	./.
chr1	173735283	.	A	.	.	LowGQX	END=173735293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173735294	.	C	.	.	LowGQX	.	GT	./.
chr1	173735295	.	A	.	.	LowGQX	END=173735296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173735297	.	A	.	.	LowGQX	.	GT	./.
chr1	173735298	.	A	.	.	LowGQX	END=173735308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173735309	.	G	.	.	LowGQX	.	GT	./.
chr1	173735310	.	A	.	.	LowGQX	END=173735332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173735333	.	C	.	.	LowGQX	.	GT	./.
chr1	173735334	.	A	.	.	LowGQX	END=173735337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173735338	.	G	.	.	LowGQX	.	GT	./.
chr1	173735339	.	C	.	.	LowGQX	END=173735341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173735342	.	G	.	.	LowGQX	.	GT	./.
chr1	173735343	.	A	.	.	LowGQX	END=173735366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173735367	.	G	.	.	LowGQX	.	GT	./.
chr1	173735368	.	G	.	.	LowGQX	END=173735373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173735374	.	T	.	.	LowGQX	.	GT	./.
chr1	173735375	.	T	.	.	LowGQX	END=173735380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173735381	.	T	.	.	LowGQX	END=173735382	GT	./.
chr1	173735383	.	C	.	.	LowGQX	END=173735388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173735389	.	G	.	.	LowGQX	.	GT	./.
chr1	173735390	.	T	.	.	LowGQX	END=173735402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173735403	.	G	.	.	LowGQX	.	GT	./.
chr1	173735404	.	T	.	.	LowGQX	END=173735408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173735409	.	T	.	.	LowGQX	.	GT	./.
chr1	173735410	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173735411	.	C	.	.	LowGQX	.	GT	./.
chr1	173735412	.	C	.	.	LowGQX	END=173735419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173735420	.	T	.	.	LowGQX	END=173735421	GT	./.
chr1	173735422	.	T	.	.	LowGQX	END=173735428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173735429	.	G	.	.	LowGQX	END=173735430	GT	./.
chr1	173743442	.	A	.	.	LowGQX	END=173743579	GT	./.
chr1	173744771	.	A	.	.	LowGQX	END=173744809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173744810	.	T	.	.	LowGQX	END=173744983	GT	./.
chr1	173751260	.	A	.	.	LowGQX	END=173751332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173751333	.	C	.	.	LowGQX	END=173751370	GT	./.
chr1	173754239	.	T	.	.	LowGQX	END=173754393	GT	./.
chr1	173769572	.	G	.	.	LowGQX	END=173769671	GT	./.
chr1	173772099	.	A	.	.	LowGQX	END=173772645	GT	./.
chr1	173775536	.	C	.	.	LowGQX	END=173775632	GT	./.
chr1	173775633	.	G	.	.	LowGQX	END=173775635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173775636	.	C	.	.	LowGQX	.	GT	./.
chr1	173775637	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173775638	.	C	.	.	LowGQX	.	GT	./.
chr1	173775639	.	T	.	.	LowGQX	END=173775640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173775641	.	G	.	.	LowGQX	.	GT	./.
chr1	173775642	.	A	.	.	LowGQX	END=173775643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173775644	.	C	.	.	LowGQX	.	GT	./.
chr1	173775645	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173775646	.	C	.	.	LowGQX	.	GT	./.
chr1	173775647	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173775648	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	173775649	.	G	.	.	LowGQX	END=173775652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173775653	.	C	.	.	LowGQX	.	GT	./.
chr1	173775654	.	A	.	.	LowGQX	END=173775655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173775656	.	A	.	.	LowGQX	END=173775657	GT	./.
chr1	173775658	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173775659	.	T	.	.	LowGQX	END=173775660	GT	./.
chr1	173775661	.	G	.	.	LowGQX	END=173775664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173775665	.	T	.	.	LowGQX	END=173775666	GT	./.
chr1	173775667	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173775668	.	A	.	.	LowGQX	END=173775669	GT	./.
chr1	173775670	.	C	.	.	LowGQX	END=173775672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173775673	.	G	.	.	LowGQX	.	GT	./.
chr1	173775674	.	A	.	.	LowGQX	END=173775675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173775676	.	C	.	.	LowGQX	END=173775677	GT	./.
chr1	173775678	.	T	.	.	LowGQX	END=173775680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173775681	.	C	.	.	LowGQX	END=173775682	GT	./.
chr1	173775683	.	C	.	.	LowGQX	END=173775686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173775687	.	A	.	.	LowGQX	.	GT	./.
chr1	173775688	.	C	.	.	LowGQX	END=173775689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173775690	.	C	.	.	LowGQX	END=173775691	GT	./.
chr1	173775692	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173775693	.	G	.	.	LowGQX	END=173775714	GT	./.
chr1	173776403	.	A	.	.	LowGQX	END=173776626	GT	./.
chr1	173776627	.	G	.	.	LowGQX	END=173776658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173780268	.	A	.	.	LowGQX	END=173780425	GT	./.
chr1	173780426	.	G	.	.	LowGQX	END=173780434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173780435	.	C	.	.	LowGQX	.	GT	./.
chr1	173780436	.	A	.	.	LowGQX	END=173780439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173794317	.	A	.	.	PASS	END=173794327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	173794328	.	G	.	.	PASS	END=173794330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:63:60
chr1	173794331	.	A	.	.	PASS	END=173794365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:60
chr1	173794366	.	A	.	.	PASS	END=173794380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	173794381	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:36:60
chr1	173794382	.	T	.	.	PASS	END=173794408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	173794409	.	A	.	.	PASS	END=173794482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	173794483	.	G	.	.	PASS	END=173794524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:87:60
chr1	173794525	.	A	.	.	PASS	END=173794545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	173795774	.	T	.	.	PASS	END=173795799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	173795800	.	T	.	.	PASS	END=173795802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	173795803	.	C	.	177.45	PASS	DP=98;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:75:96:99:60:99
chr1	173795804	.	T	.	.	PASS	END=173795846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	173795847	.	G	.	.	PASS	END=173795960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	173795961	.	T	.	.	PASS	END=173795975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	173797420	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	173797421	.	C	.	.	LowGQX	END=173797422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:60
chr1	173797423	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	173797424	.	A	.	.	LowGQX	END=173797425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	173797426	.	A	.	48.05	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:18.06:60:18
chr1	173797427	.	G	.	45.04	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:15.04:60:15
chr1	173797428	.	A	.	.	LowGQX	END=173797429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	173797430	.	T	.	.	LowGQX	END=173797432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	173797433	.	A	.	.	LowGQX	END=173797434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	173797435	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	173797436	.	T	.	.	LowGQX	END=173797440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	173797441	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	173797442	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:12:60
chr1	173797443	.	G	.	.	LowGQX	END=173797445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	173797446	.	T	.	.	LowGQX	END=173797447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:60
chr1	173797448	.	T	.	36.01	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:7:6.01:60:6
chr1	173797449	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:6:60
chr1	173797450	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	173797451	.	T	C	27.23	LowGQX;SB	BaseQRankSum=-1.537;DP=6;Dels=0.00;FS=0.000;HRun=10;HaplotypeScore=6.7329;MQ=60;MQ0=0;MQRankSum=1.537;QD=4.54;ReadPosRankSum=0.406;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,3:6:57.21:57,0,100:60:27:0.500
chr1	173797452	.	C	.	.	LowGQX	END=173797453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	173797454	.	C	.	.	LowGQX	END=173797458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	173797459	.	C	.	.	PASS	END=173797460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	173797461	.	C	.	.	PASS	END=173797465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	173797466	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:16:60
chr1	173797467	.	T	.	.	PASS	END=173797498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	173797499	.	T	.	.	PASS	END=173797508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	173797509	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:35:60
chr1	173797510	.	T	.	.	PASS	END=173797533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	173797534	.	T	.	.	PASS	END=173797562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	173797563	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:18:60
chr1	173797564	.	T	.	.	PASS	END=173797588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr1	173799747	.	T	.	.	PASS	END=173799749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	173799750	.	C	.	.	PASS	END=173799751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:52:60
chr1	173799752	.	G	.	.	PASS	END=173799782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	173799783	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:74:60
chr1	173799784	.	C	.	.	PASS	END=173799812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	173799813	.	A	.	.	PASS	END=173799851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	173799852	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:51:60
chr1	173799853	.	A	.	.	PASS	END=173799875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	173799876	.	C	.	.	PASS	END=173799893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	173799894	.	A	.	.	PASS	END=173799938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	173799939	.	A	.	.	PASS	END=173799950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	173800622	.	G	.	.	PASS	END=173800708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	173800709	.	A	.	.	PASS	END=173800777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	173800778	.	T	.	.	PASS	END=173800819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	173802463	.	C	.	.	PASS	END=173802593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	173802594	.	C	.	.	PASS	END=173802678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	173802679	.	C	.	.	PASS	END=173802688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	173803560	.	G	.	.	PASS	END=173803613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	173803614	.	T	.	.	PASS	END=173803669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	173803670	.	C	.	.	PASS	END=173803688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	173803689	.	A	.	.	PASS	END=173803700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	173803701	.	G	.	.	PASS	END=173803708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	173806037	.	T	.	.	PASS	END=173806090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	173806091	.	T	.	.	PASS	END=173806209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	173806210	.	G	.	.	PASS	END=173806235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	173807277	.	T	.	.	PASS	END=173807299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	173807300	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:61:60
chr1	173807301	.	T	.	.	PASS	END=173807324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	173807325	.	T	.	.	PASS	END=173807376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	173807377	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:99:60
chr1	173807378	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:66:60
chr1	173807379	.	A	.	.	PASS	END=173807403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	173807404	.	A	.	.	PASS	END=173807434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	173807435	.	C	.	.	PASS	END=173807448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	173808454	.	A	.	.	PASS	END=173808458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	173808459	.	T	.	.	PASS	END=173808628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	173808629	.	C	.	.	PASS	END=173808735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	173809953	.	G	.	.	PASS	END=173810095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	173810096	.	T	.	.	PASS	END=173810132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:94:60
chr1	173810133	.	G	.	.	PASS	END=173810150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	173810151	.	C	.	.	PASS	END=173810162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	173814316	.	A	.	.	PASS	END=173814413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	173814414	.	T	.	.	PASS	END=173814443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	173814444	.	A	.	.	PASS	END=173814476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	173814477	.	T	.	.	PASS	END=173814480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	173819414	.	C	.	.	PASS	END=173819453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	173819454	.	C	.	333.92	PASS	DP=205;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:158:205:99:60:99
chr1	173819455	.	T	.	.	PASS	END=173819527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	173819528	.	A	.	.	PASS	END=173819545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr1	173819546	.	G	.	.	PASS	END=173819624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:259:99:60
chr1	173819625	.	A	.	.	PASS	END=173819668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	173822436	.	C	.	.	PASS	END=173822463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	173822464	.	A	.	.	PASS	END=173822517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	173822518	.	G	.	.	PASS	END=173822542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	173822543	.	A	.	.	PASS	END=173822656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	173822657	.	T	.	.	PASS	END=173822683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	173822684	.	C	.	.	PASS	END=173822692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	173822693	.	T	.	.	PASS	END=173822720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	173822721	.	T	.	.	PASS	END=173822742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	173822743	.	T	.	.	PASS	END=173822749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	173822750	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:47:60
chr1	173822751	.	G	.	.	PASS	END=173822756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	173822882	.	A	.	.	PASS	END=173822926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	173822927	.	T	.	.	PASS	END=173823050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	173823051	.	A	.	.	PASS	END=173823094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	173825753	.	C	.	.	PASS	END=173825797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	173825798	.	T	.	.	PASS	END=173825836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	173825837	.	G	.	.	PASS	END=173825887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	173825888	.	C	.	.	PASS	END=173825924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	173825925	.	T	.	.	PASS	END=173825930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	173826605	.	T	.	.	PASS	END=173826638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	173826639	.	T	.	.	PASS	END=173826654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	173826655	.	G	.	.	PASS	END=173826666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	173826667	.	C	.	.	PASS	END=173826705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	173826706	.	G	.	.	PASS	END=173826809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	173826810	.	G	.	.	PASS	END=173826839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	173826840	.	T	.	.	PASS	END=173826854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	173826855	.	C	.	.	PASS	END=173826866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	173826867	.	T	.	.	PASS	END=173826894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	173833273	.	A	.	.	LowGQX	END=173833372	GT	./.
chr1	173833491	.	T	.	.	LowGQX	END=173833577	GT	./.
chr1	173833578	.	T	.	.	LowGQX	END=173833580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173833581	.	G	.	.	LowGQX	.	GT	./.
chr1	173833582	.	T	.	.	LowGQX	END=173833590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173833897	.	C	.	.	LowGQX	END=173833909	GT	./.
chr1	173833910	.	A	.	.	LowGQX	END=173833983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	173833984	.	C	.	.	LowGQX	END=173834055	GT	./.
chr1	173834479	.	T	.	.	LowGQX	END=173834578	GT	./.
chr1	173834743	.	A	.	.	LowGQX	END=173834842	GT	./.
chr1	173835034	.	T	.	.	LowGQX	END=173835185	GT	./.
chr1	173835424	.	A	.	.	LowGQX	END=173835523	GT	./.
chr1	173835763	.	C	.	.	LowGQX	END=173835862	GT	./.
chr1	173835997	.	A	.	.	LowGQX	END=173836096	GT	./.
chr1	173836798	.	T	.	.	LowGQX	END=173836897	GT	./.
chr1	173839362	.	C	.	.	LowGQX	END=173839363	GT	./.
chr1	173839364	.	A	.	.	LowGQX	END=173839376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173839377	.	G	.	.	LowGQX	.	GT	./.
chr1	173839378	.	G	.	.	LowGQX	END=173839385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173839386	.	A	.	.	LowGQX	.	GT	./.
chr1	173839387	.	A	.	.	LowGQX	END=173839389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173839390	.	G	.	.	LowGQX	.	GT	./.
chr1	173839391	.	G	.	.	LowGQX	END=173839407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173839408	.	C	.	.	LowGQX	END=173839409	GT	./.
chr1	173839410	.	A	.	.	LowGQX	END=173839423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173839424	.	C	.	.	LowGQX	END=173839910	GT	./.
chr1	173839911	.	A	.	.	LowGQX	END=173840004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173840005	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	173840006	.	A	.	.	LowGQX	END=173840095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173840096	.	A	.	.	LowGQX	END=173840288	GT	./.
chr1	173842603	.	A	.	.	LowGQX	END=173842681	GT	./.
chr1	173842682	.	A	.	.	LowGQX	END=173842724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173842725	.	A	.	.	LowGQX	.	GT	./.
chr1	173842726	.	A	.	.	LowGQX	END=173842730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173842731	.	T	.	.	LowGQX	.	GT	./.
chr1	173842732	.	T	.	.	LowGQX	END=173842769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173854773	.	G	.	.	LowGQX	END=173855262	GT	./.
chr1	173872976	.	A	.	.	PASS	END=173873061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	173873062	.	A	.	.	PASS	END=173873211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	173873212	.	C	.	.	PASS	END=173873254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	173876537	.	G	.	.	PASS	END=173876558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	173876559	.	C	.	.	PASS	END=173876593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	173876594	.	A	.	.	PASS	END=173876670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	173876671	.	A	.	.	PASS	END=173876703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	173878639	.	G	.	.	LowGQX	END=173878642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	173878643	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	173878644	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	173878645	.	C	.	.	LowGQX	END=173878647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	173878648	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:60
chr1	173878649	.	C	.	.	LowGQX	END=173878667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	173878668	.	G	.	.	PASS	END=173878669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	173878670	.	A	.	.	LowGQX	END=173878677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	173878678	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	173878679	.	C	.	.	LowGQX	END=173878685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	173878686	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	173878687	.	A	.	.	LowGQX	END=173878688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	173878689	.	C	.	.	PASS	END=173878690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	173878691	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	173878692	.	G	.	.	PASS	END=173878694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	173878695	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	173878696	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	173878697	.	T	.	.	LowGQX	END=173878699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	173878700	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	173878701	.	G	.	.	LowGQX	END=173878702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	173878703	.	C	.	.	PASS	END=173878709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	173878710	.	G	.	.	PASS	END=173878719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	173878720	.	G	.	.	PASS	END=173878725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	173878726	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:27:60
chr1	173878727	.	A	.	.	PASS	END=173878736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	173878737	.	T	.	.	PASS	END=173878750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr1	173878751	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:60:60
chr1	173878752	.	T	.	.	PASS	END=173878757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	173878758	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:52:60
chr1	173878759	.	T	.	.	PASS	END=173878768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	173878769	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:69:60
chr1	173878770	.	T	.	.	PASS	END=173878777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	173878778	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:76:60
chr1	173878779	.	A	.	.	PASS	END=173878824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:84:60
chr1	173878825	.	G	.	.	PASS	END=173878831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	173878832	.	T	C	1795.57	PASS	BaseQRankSum=-1.662;DP=72;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.8302;MQ=60;MQ0=0;MQRankSum=1.388;QD=24.94;ReadPosRankSum=2.313;SB=-1126.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,70:72:96.68:1829,97,0:60:97:0.972
chr1	173878833	.	T	.	.	PASS	END=173878861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	173878862	.	T	C	2255.80	PASS	BaseQRankSum=2.156;DP=85;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=10.4683;MQ=60;MQ0=0;MQRankSum=1.071;QD=26.54;ReadPosRankSum=0.161;SB=-1412.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,82:85:99:2289,172,0:60:99:0.976
chr1	173878863	.	A	.	.	PASS	END=173878923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	173878924	.	T	.	.	PASS	END=173878974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:78:60
chr1	173878975	.	A	.	.	PASS	END=173878984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	173878985	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:66:60
chr1	173878986	.	T	.	.	PASS	END=173878996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	173878997	.	A	.	.	PASS	END=173879003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:66:60
chr1	173879004	.	G	.	78.14	PASS	DP=40;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:31:40:48.15:60:48
chr1	173879005	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:81:60
chr1	173879006	.	A	.	78.15	PASS	DP=39;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:31:39:48.15:60:48
chr1	173879007	.	C	.	.	PASS	END=173879033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	173879034	.	A	.	.	PASS	END=173879036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	173879037	.	T	.	.	PASS	END=173879051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	173879052	.	T	.	.	PASS	END=173879070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	173879071	.	T	.	.	PASS	END=173879096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	173879097	.	A	.	.	PASS	END=173879104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	173879105	.	A	.	.	PASS	END=173879110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	173879111	.	A	.	.	PASS	END=173879117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	173879118	.	T	.	.	PASS	END=173879119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	173879120	.	G	.	.	PASS	END=173879131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	173879841	.	C	.	.	PASS	END=173879851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr1	173879852	.	G	.	.	PASS	END=173879865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	173879866	.	G	.	.	PASS	END=173879875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	173879876	.	G	.	.	PASS	END=173879915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	173879916	.	C	.	.	PASS	END=173880009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	173880010	.	C	.	.	PASS	END=173880019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	173880020	.	C	.	.	PASS	END=173880035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	173880036	.	A	.	.	PASS	END=173880058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	173880059	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:60:60
chr1	173880060	.	C	.	.	PASS	END=173880065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	173880066	.	T	.	.	PASS	END=173880069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	173880070	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:36:60
chr1	173880071	.	A	.	.	PASS	END=173880077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	173880078	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:27:60
chr1	173880079	.	T	.	.	PASS	END=173880080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	173880886	.	T	.	.	PASS	END=173880894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr1	173880895	.	A	.	.	PASS	END=173880916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	173880917	.	G	.	.	PASS	END=173880922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	173880923	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:45:60
chr1	173880924	.	A	.	.	PASS	END=173880948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	173880949	.	G	.	.	PASS	END=173880964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	173880965	.	C	.	.	PASS	END=173880998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	173880999	.	C	.	.	PASS	END=173881115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	173881116	.	C	.	.	PASS	END=173881149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	173881150	.	T	.	.	PASS	END=173881190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	173881191	.	G	.	.	PASS	END=173881203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	173883640	.	C	.	.	PASS	END=173883653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	173883654	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:45:60
chr1	173883655	.	T	.	.	PASS	END=173883688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:77:60
chr1	173883689	.	A	.	.	PASS	END=173883707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:94:60
chr1	173883708	.	G	.	.	PASS	END=173883722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	173883723	.	C	.	.	PASS	END=173883824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:96:60
chr1	173883825	.	T	.	.	PASS	END=173883861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	173883862	.	A	.	.	PASS	END=173883905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:96:60
chr1	173883906	.	C	.	.	PASS	END=173883929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	173883930	.	A	.	.	PASS	END=173883969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	173883970	.	C	.	.	PASS	END=173883993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	173883994	.	G	.	.	PASS	END=173883999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	173884000	.	G	.	.	PASS	END=173884007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	173884008	.	T	.	.	PASS	END=173884009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	173884010	.	A	.	.	PASS	END=173884012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	173884013	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:9:60
chr1	173884014	.	A	.	.	PASS	END=173884015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	173884016	.	T	.	.	PASS	END=173884023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	173884024	.	G	.	.	PASS	END=173884028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	173884029	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	173884030	.	G	.	.	PASS	END=173884034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	173884035	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	173884036	.	C	.	.	PASS	END=173884039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	173884040	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	173884041	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	173884042	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:0:60
chr1	173884043	.	A	.	.	PASS	END=173884044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	173884045	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	173884046	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	173884047	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	173884048	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	173884049	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	173884050	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	173884051	.	A	.	.	LowGQX	END=173884052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	173884053	.	C	.	.	PASS	END=173884058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	173884059	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	173884060	.	G	.	.	PASS	END=173884061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	173884062	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	173884063	.	A	.	.	PASS	END=173884066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	173884067	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	173884068	.	A	.	.	PASS	END=173884070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	173884071	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	173884072	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	173884073	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	173884074	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	173884075	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	173884076	.	C	.	.	PASS	END=173884077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	173884078	.	A	.	.	LowGQX	END=173884079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	173884080	.	G	.	.	PASS	END=173884081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	173884082	.	T	.	.	LowGQX	END=173884086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	173884087	.	T	.	.	PASS	END=173884088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	173884089	.	G	.	.	LowGQX	END=173884090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	173884091	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	173884092	.	T	.	.	LowGQX	END=173884095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	173884096	.	A	.	.	LowGQX	END=173884097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	173884098	.	C	.	.	LowGQX	END=173884105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	173884106	.	C	.	.	LowGQX	END=173884107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	173884108	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	173886306	.	A	.	.	PASS	END=173886374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	173886375	.	G	.	.	PASS	END=173886425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	173886426	.	A	.	.	PASS	END=173886448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	173907857	.	T	.	.	LowGQX	END=173908012	GT	./.
chr1	173910401	.	A	.	.	LowGQX	END=173910520	GT	./.
chr1	173912578	.	A	.	.	LowGQX	END=173912695	GT	./.
chr1	173912696	.	G	.	.	LowGQX	END=173912698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173912699	.	A	.	.	LowGQX	.	GT	./.
chr1	173912700	.	C	.	.	LowGQX	END=173912708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173912709	.	C	.	.	LowGQX	.	GT	./.
chr1	173912710	.	A	.	.	LowGQX	END=173912724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173912725	.	C	.	.	LowGQX	.	GT	./.
chr1	173912726	.	T	.	.	LowGQX	END=173912733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173912734	.	A	.	.	LowGQX	.	GT	./.
chr1	173912735	.	C	.	.	LowGQX	END=173912755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173915612	.	A	.	.	LowGQX	END=173915748	GT	./.
chr1	173915880	.	A	.	.	LowGQX	END=173915979	GT	./.
chr1	173916505	.	A	.	.	LowGQX	END=173916722	GT	./.
chr1	173921122	.	A	.	.	LowGQX	END=173921278	GT	./.
chr1	173930213	.	A	.	.	LowGQX	END=173930384	GT	./.
chr1	173930861	.	A	.	.	LowGQX	END=173931235	GT	./.
chr1	173933109	.	A	.	.	LowGQX	END=173933327	GT	./.
chr1	173933975	.	A	.	.	LowGQX	END=173933979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173933980	.	T	.	.	LowGQX	END=173933981	GT	./.
chr1	173933982	.	A	.	.	LowGQX	END=173933989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173933990	.	A	.	.	LowGQX	.	GT	./.
chr1	173933991	.	T	.	.	LowGQX	END=173933994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173933995	.	G	.	.	LowGQX	.	GT	./.
chr1	173933996	.	G	.	.	LowGQX	END=173934009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173934010	.	A	.	.	LowGQX	END=173934260	GT	./.
chr1	173939591	.	C	.	.	LowGQX	END=173939662	GT	./.
chr1	173939663	.	G	.	.	LowGQX	END=173939722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173939723	.	C	.	.	LowGQX	.	GT	./.
chr1	173939724	.	A	.	.	LowGQX	END=173939757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	173941645	.	A	.	.	LowGQX	END=173941767	GT	./.
chr1	173947624	.	A	.	.	LowGQX	END=173947760	GT	./.
chr1	173949945	.	A	.	.	LowGQX	END=173950149	GT	./.
chr1	173951863	.	A	.	.	LowGQX	END=173952042	GT	./.
chr1	173952554	.	A	.	.	LowGQX	END=173952797	GT	./.
chr1	173953635	.	A	.	.	LowGQX	END=173953759	GT	./.
chr1	173961891	.	A	.	.	LowGQX	END=173962125	GT	./.
chr1	174188254	.	T	.	.	LowGQX	END=174188435	GT	./.
chr1	174190108	.	A	.	.	LowGQX	END=174190304	GT	./.
chr1	174200281	.	A	.	.	LowGQX	END=174200495	GT	./.
chr1	174210619	.	A	.	.	LowGQX	END=174210797	GT	./.
chr1	174219611	.	A	.	.	LowGQX	END=174219772	GT	./.
chr1	174221581	.	G	.	.	LowGQX	END=174221711	GT	./.
chr1	174221712	.	G	.	.	LowGQX	END=174221760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174241480	.	G	.	.	LowGQX	END=174241635	GT	./.
chr1	174244969	.	A	.	.	LowGQX	END=174245075	GT	./.
chr1	174247738	.	A	.	.	LowGQX	END=174247919	GT	./.
chr1	174274082	.	T	.	.	LowGQX	END=174274084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	174274085	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	174274086	.	A	.	.	LowGQX	END=174274165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	174274166	.	G	.	.	LowGQX	END=174274168	GT	./.
chr1	174274169	.	G	.	.	LowGQX	END=174274170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174274171	.	G	.	.	LowGQX	.	GT	./.
chr1	174274172	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174274173	.	T	.	.	LowGQX	.	GT	./.
chr1	174274174	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174274175	.	A	.	.	LowGQX	.	GT	./.
chr1	174274176	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174274177	.	T	.	.	LowGQX	.	GT	./.
chr1	174274178	.	C	.	.	LowGQX	END=174274179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174274180	.	A	.	.	LowGQX	.	GT	./.
chr1	174274181	.	C	.	.	LowGQX	END=174274189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174274190	.	T	.	.	LowGQX	.	GT	./.
chr1	174274191	.	C	.	.	LowGQX	END=174274193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174274194	.	A	.	.	LowGQX	.	GT	./.
chr1	174274195	.	C	.	.	LowGQX	END=174274197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174274198	.	G	.	.	LowGQX	.	GT	./.
chr1	174274199	.	G	.	.	LowGQX	END=174274201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174274202	.	G	.	.	LowGQX	.	GT	./.
chr1	174274203	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174274204	.	A	.	.	LowGQX	.	GT	./.
chr1	174274205	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174274206	.	C	.	.	LowGQX	END=174274207	GT	./.
chr1	174274208	.	G	.	.	LowGQX	END=174274213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174274214	.	C	.	.	LowGQX	.	GT	./.
chr1	174274215	.	C	.	.	LowGQX	END=174274222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174274223	.	G	.	.	LowGQX	.	GT	./.
chr1	174274224	.	G	.	.	LowGQX	END=174274226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174274227	.	G	.	.	LowGQX	.	GT	./.
chr1	174274228	.	G	.	.	LowGQX	END=174274230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174274231	.	T	.	.	LowGQX	END=174274267	GT	./.
chr1	174340114	.	C	.	.	LowGQX	END=174340213	GT	./.
chr1	174363131	.	A	.	.	LowGQX	END=174363249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174363250	.	A	.	.	LowGQX	END=174363285	GT	./.
chr1	174417248	.	C	.	.	LowGQX	END=174417266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417267	.	G	.	.	LowGQX	.	GT	./.
chr1	174417268	.	A	.	.	LowGQX	END=174417277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417278	.	G	.	.	LowGQX	.	GT	./.
chr1	174417279	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417280	.	A	.	.	LowGQX	.	GT	./.
chr1	174417281	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417282	.	C	.	.	LowGQX	.	GT	./.
chr1	174417283	.	C	.	.	LowGQX	END=174417286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417287	.	A	.	.	LowGQX	.	GT	./.
chr1	174417288	.	C	.	.	LowGQX	END=174417289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417290	.	T	.	.	LowGQX	.	GT	./.
chr1	174417291	.	G	.	.	LowGQX	END=174417295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417296	.	G	.	.	LowGQX	END=174417297	GT	./.
chr1	174417298	.	G	.	.	LowGQX	END=174417303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417304	.	G	.	.	LowGQX	.	GT	./.
chr1	174417305	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417306	.	G	.	.	LowGQX	END=174417308	GT	./.
chr1	174417309	.	T	.	.	LowGQX	END=174417311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417312	.	G	.	.	LowGQX	.	GT	./.
chr1	174417313	.	T	.	.	LowGQX	END=174417314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417315	.	C	.	.	LowGQX	.	GT	./.
chr1	174417316	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417317	.	A	.	.	LowGQX	.	GT	./.
chr1	174417318	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417319	.	C	.	.	LowGQX	END=174417320	GT	./.
chr1	174417321	.	T	.	.	LowGQX	END=174417326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417327	.	C	.	.	LowGQX	.	GT	./.
chr1	174417328	.	T	.	.	LowGQX	END=174417333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	174417334	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	174417335	.	T	.	.	LowGQX	END=174417344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	174417345	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	174417346	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	174417347	.	A	.	.	LowGQX	END=174417350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	174417351	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	174417352	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	174417353	.	G	.	.	LowGQX	END=174417356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	174417357	.	G	.	.	LowGQX	.	GT	./.
chr1	174417358	.	G	.	.	LowGQX	END=174417359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	174417360	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	174417361	.	G	.	.	LowGQX	END=174417365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	174417366	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	174417367	.	T	.	.	LowGQX	END=174417368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	174417369	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	174417370	.	A	.	.	LowGQX	END=174417383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	174417384	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	174417385	.	G	.	.	LowGQX	END=174417386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	174417387	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	174417388	.	A	.	.	LowGQX	END=174417400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417401	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	174417402	.	A	.	.	LowGQX	END=174417408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417409	.	A	.	.	LowGQX	.	GT	./.
chr1	174417410	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417411	.	C	.	.	LowGQX	END=174417413	GT	./.
chr1	174417414	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417415	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	174417416	.	C	.	.	LowGQX	.	GT	./.
chr1	174417417	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417418	.	G	.	.	LowGQX	.	GT	./.
chr1	174417419	.	G	.	.	LowGQX	END=174417427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417428	.	C	.	.	LowGQX	END=174417429	GT	./.
chr1	174417430	.	G	.	.	LowGQX	END=174417432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417433	.	A	.	.	LowGQX	END=174417434	GT	./.
chr1	174417435	.	C	.	.	LowGQX	END=174417442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417443	.	T	.	.	LowGQX	.	GT	./.
chr1	174417444	.	T	.	.	LowGQX	END=174417456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417457	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	174417458	.	T	.	.	LowGQX	END=174417462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417463	.	C	.	.	LowGQX	.	GT	./.
chr1	174417464	.	A	.	.	LowGQX	END=174417475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174417476	.	C	.	.	LowGQX	END=174418054	GT	./.
chr1	174418055	.	G	.	.	LowGQX	END=174418240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174418241	.	T	.	.	LowGQX	END=174418337	GT	./.
chr1	174513930	.	G	.	.	LowGQX	END=174514089	GT	./.
chr1	174516974	.	G	.	.	LowGQX	END=174517193	GT	./.
chr1	174606511	.	A	.	.	LowGQX	END=174606628	GT	./.
chr1	174652648	.	T	.	.	LowGQX	END=174652662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174652663	.	T	.	.	LowGQX	END=174652747	GT	./.
chr1	174668661	.	A	.	.	LowGQX	END=174668790	GT	./.
chr1	174670208	.	T	.	.	LowGQX	END=174670331	GT	./.
chr1	174671249	.	A	.	.	LowGQX	END=174671386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174671387	.	T	.	.	LowGQX	END=174671396	GT	./.
chr1	174721369	.	A	.	.	LowGQX	END=174721521	GT	./.
chr1	174769470	.	C	.	.	LowGQX	END=174769638	GT	./.
chr1	174780968	.	A	.	.	LowGQX	END=174781100	GT	./.
chr1	174846495	.	T	.	.	LowGQX	END=174846594	GT	./.
chr1	174846631	.	A	.	.	LowGQX	END=174846745	GT	./.
chr1	174926591	.	C	.	.	LowGQX	END=174926690	GT	./.
chr1	174926831	.	G	.	.	LowGQX	END=174926930	GT	./.
chr1	174926986	.	G	.	.	LowGQX	END=174927085	GT	./.
chr1	174927237	.	T	.	.	LowGQX	END=174927336	GT	./.
chr1	174934053	.	A	.	.	LowGQX	END=174934152	GT	./.
chr1	174938413	.	G	.	.	LowGQX	END=174938524	GT	./.
chr1	174945214	.	G	.	.	LowGQX	END=174945319	GT	./.
chr1	174947936	.	C	.	.	LowGQX	END=174948035	GT	./.
chr1	174951957	.	T	.	.	LowGQX	END=174952014	GT	./.
chr1	174952015	.	C	.	.	LowGQX	END=174952056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174957777	.	G	.	.	LowGQX	END=174957975	GT	./.
chr1	174958985	.	G	.	.	LowGQX	END=174959138	GT	./.
chr1	174969215	.	G	.	.	LowGQX	END=174969250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174969251	.	G	.	.	LowGQX	.	GT	./.
chr1	174969252	.	C	.	.	LowGQX	END=174969258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174969259	.	T	.	.	LowGQX	.	GT	./.
chr1	174969260	.	T	.	.	LowGQX	END=174969270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174969271	.	C	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	174969272	.	C	.	.	LowGQX	END=174969289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174969290	.	T	.	.	LowGQX	.	GT	./.
chr1	174969291	.	C	.	.	LowGQX	END=174969332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174969333	.	T	.	.	LowGQX	.	GT	./.
chr1	174969334	.	A	.	.	LowGQX	END=174969339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174969340	.	T	.	.	LowGQX	.	GT	./.
chr1	174969341	.	C	.	.	LowGQX	END=174969374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174973748	.	A	.	.	LowGQX	END=174973867	GT	./.
chr1	174973868	.	A	.	.	LowGQX	END=174973871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174973872	.	G	.	.	LowGQX	.	GT	./.
chr1	174973873	.	A	.	.	LowGQX	END=174973874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174973875	.	A	.	.	LowGQX	.	GT	./.
chr1	174973876	.	T	.	.	LowGQX	END=174973884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174973885	.	A	.	.	LowGQX	.	GT	./.
chr1	174973886	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174973887	.	A	.	.	LowGQX	.	GT	./.
chr1	174973888	.	G	.	.	LowGQX	END=174973903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174973904	.	A	.	.	LowGQX	.	GT	./.
chr1	174973905	.	T	.	.	LowGQX	END=174973942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174973943	.	G	.	.	LowGQX	.	GT	./.
chr1	174973944	.	C	.	.	LowGQX	END=174973972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174973973	.	T	.	.	LowGQX	.	GT	./.
chr1	174973974	.	G	.	.	LowGQX	END=174974130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174975879	.	A	.	.	LowGQX	END=174975979	GT	./.
chr1	174976232	.	A	.	.	LowGQX	END=174976335	GT	./.
chr1	174977743	.	A	.	.	LowGQX	END=174977844	GT	./.
chr1	174979057	.	A	.	.	LowGQX	END=174979076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174979077	.	T	.	.	LowGQX	.	GT	./.
chr1	174979078	.	G	.	.	LowGQX	END=174979098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174979099	.	T	.	.	LowGQX	.	GT	./.
chr1	174979100	.	T	.	.	LowGQX	END=174979102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174979103	.	T	.	.	LowGQX	.	GT	./.
chr1	174979104	.	G	.	.	LowGQX	END=174979108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174979109	.	T	.	.	LowGQX	.	GT	./.
chr1	174979110	.	T	.	.	LowGQX	END=174979130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174979131	.	T	.	.	LowGQX	.	GT	./.
chr1	174979132	.	G	.	.	LowGQX	END=174979141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174979142	.	A	.	.	LowGQX	END=174979217	GT	./.
chr1	174983803	.	A	.	.	LowGQX	END=174984042	GT	./.
chr1	174987552	.	A	.	.	LowGQX	END=174987714	GT	./.
chr1	174992408	.	C	.	.	LowGQX	END=174992417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174992418	.	A	.	.	LowGQX	.	GT	./.
chr1	174992419	.	G	.	.	LowGQX	END=174992420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174992421	.	T	.	.	LowGQX	.	GT	./.
chr1	174992422	.	G	.	.	LowGQX	END=174992442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174992443	.	T	.	.	LowGQX	.	GT	./.
chr1	174992444	.	G	.	.	LowGQX	END=174992447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	174992448	.	T	.	.	LowGQX	END=174992546	GT	./.
chr1	175036981	.	A	.	.	LowGQX	.	GT	./.
chr1	175036982	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175036983	.	G	.	.	LowGQX	.	GT	./.
chr1	175036984	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175036985	.	A	.	.	LowGQX	.	GT	./.
chr1	175036986	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175036987	.	G	.	.	LowGQX	.	GT	./.
chr1	175036988	.	A	.	.	LowGQX	END=175036989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175036990	.	C	.	.	LowGQX	.	GT	./.
chr1	175036991	.	A	.	.	LowGQX	END=175036993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175036994	.	A	.	.	LowGQX	.	GT	./.
chr1	175036995	.	A	.	.	LowGQX	END=175036997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175036998	.	A	.	.	LowGQX	.	GT	./.
chr1	175036999	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175037000	.	C	.	.	LowGQX	.	GT	./.
chr1	175037001	.	A	.	.	LowGQX	END=175037002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175037003	.	G	.	.	LowGQX	.	GT	./.
chr1	175037004	.	G	.	.	LowGQX	END=175037007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175037008	.	G	.	.	LowGQX	.	GT	./.
chr1	175037009	.	C	.	.	LowGQX	END=175037010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175037011	.	G	.	.	LowGQX	.	GT	./.
chr1	175037012	.	C	.	.	LowGQX	END=175037020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175037021	.	A	.	.	LowGQX	END=175037022	GT	./.
chr1	175037023	.	C	.	.	LowGQX	END=175037027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175037028	.	C	.	.	LowGQX	.	GT	./.
chr1	175037029	.	A	.	.	LowGQX	END=175037048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175037049	.	A	.	.	LowGQX	.	GT	./.
chr1	175037050	.	G	.	.	LowGQX	END=175037052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175037053	.	G	.	.	LowGQX	.	GT	./.
chr1	175037054	.	C	.	.	LowGQX	END=175037055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175037056	.	C	.	.	LowGQX	END=175037057	GT	./.
chr1	175037058	.	C	.	.	LowGQX	END=175037059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175037060	.	G	.	.	LowGQX	.	GT	./.
chr1	175037061	.	C	.	.	LowGQX	END=175037062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175037063	.	G	.	.	LowGQX	.	GT	./.
chr1	175037064	.	C	.	.	LowGQX	END=175037068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175037069	.	C	.	.	LowGQX	.	GT	./.
chr1	175037070	.	A	.	.	LowGQX	END=175037071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175037072	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	175037073	.	T	.	.	LowGQX	END=175037080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175046553	.	G	.	.	LowGQX	END=175046965	GT	./.
chr1	175048456	.	C	.	.	LowGQX	END=175048758	GT	./.
chr1	175048759	.	C	.	.	LowGQX	END=175048845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175049297	.	A	.	.	LowGQX	END=175049564	GT	./.
chr1	175052884	.	A	.	.	LowGQX	END=175052912	GT	./.
chr1	175052913	.	T	.	.	LowGQX	END=175052915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175052916	.	C	.	.	LowGQX	.	GT	./.
chr1	175052917	.	A	.	.	LowGQX	END=175052926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175052927	.	G	.	.	LowGQX	.	GT	./.
chr1	175052928	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175052929	.	G	.	.	LowGQX	.	GT	./.
chr1	175052930	.	A	.	.	LowGQX	END=175052933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175052934	.	C	.	.	LowGQX	.	GT	./.
chr1	175052935	.	C	.	.	LowGQX	END=175052936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175052937	.	T	.	.	LowGQX	.	GT	./.
chr1	175052938	.	T	.	.	LowGQX	END=175052940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175052941	.	C	.	.	LowGQX	.	GT	./.
chr1	175052942	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175052943	.	T	.	.	LowGQX	END=175052948	GT	./.
chr1	175052949	.	G	.	.	LowGQX	END=175052950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175052951	.	G	.	.	LowGQX	.	GT	./.
chr1	175052952	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175052953	.	A	.	.	LowGQX	END=175052954	GT	./.
chr1	175052955	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175052956	.	C	.	.	LowGQX	END=175052958	GT	./.
chr1	175052959	.	C	.	.	LowGQX	END=175052964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175052965	.	T	.	.	LowGQX	.	GT	./.
chr1	175052966	.	G	.	.	LowGQX	END=175052969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175052970	.	T	.	.	LowGQX	END=175052974	GT	./.
chr1	175052975	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175052976	.	A	.	.	LowGQX	END=175052977	GT	./.
chr1	175052978	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175052979	.	A	.	.	LowGQX	.	GT	./.
chr1	175052980	.	C	.	.	LowGQX	END=175052985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175052986	.	G	.	.	LowGQX	END=175052988	GT	./.
chr1	175052989	.	A	.	.	LowGQX	END=175052990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175052991	.	A	.	.	LowGQX	.	GT	./.
chr1	175052992	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175052993	.	G	.	.	LowGQX	.	GT	./.
chr1	175052994	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175052995	.	C	.	.	LowGQX	END=175052997	GT	./.
chr1	175052998	.	C	.	.	LowGQX	END=175053004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175053005	.	G	.	.	LowGQX	.	GT	./.
chr1	175053006	.	G	.	.	LowGQX	END=175053009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175053010	.	G	.	.	LowGQX	END=175053011	GT	./.
chr1	175053012	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175053013	.	G	.	.	LowGQX	END=175053014	GT	./.
chr1	175053015	.	T	.	.	LowGQX	END=175053018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	175053019	.	T	.	.	LowGQX	END=175053020	GT	./.
chr1	175053021	.	A	.	.	LowGQX	END=175053022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	175053023	.	G	.	.	LowGQX	.	GT	./.
chr1	175053024	.	T	.	.	LowGQX	END=175053026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	175053027	.	C	.	.	LowGQX	.	GT	./.
chr1	175053028	.	T	.	.	LowGQX	END=175053030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	175053031	.	G	.	.	LowGQX	.	GT	./.
chr1	175053032	.	C	.	.	LowGQX	END=175053034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	175053035	.	A	.	.	LowGQX	.	GT	./.
chr1	175053036	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	175053037	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	175053038	.	A	.	.	LowGQX	END=175053044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	175053045	.	A	.	.	LowGQX	.	GT	./.
chr1	175053046	.	C	.	.	LowGQX	END=175053062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	175053063	.	A	.	.	LowGQX	END=175053065	GT	./.
chr1	175053066	.	T	.	.	LowGQX	END=175053069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175053070	.	T	.	.	LowGQX	.	GT	./.
chr1	175053071	.	G	.	.	LowGQX	END=175053073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175054536	.	T	.	.	LowGQX	END=175054635	GT	./.
chr1	175063124	.	A	.	.	LowGQX	END=175063154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175063155	.	G	.	.	LowGQX	.	GT	./.
chr1	175063156	.	A	.	.	LowGQX	END=175063161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	175063162	.	T	A	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	175063163	.	G	.	.	LowGQX	END=175063206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	175063207	.	T	.	.	LowGQX	.	GT	./.
chr1	175063208	.	C	.	.	LowGQX	END=175063243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175063244	.	T	.	.	LowGQX	.	GT	./.
chr1	175063245	.	G	.	.	LowGQX	END=175063246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175063247	.	G	.	.	LowGQX	.	GT	./.
chr1	175063248	.	G	.	.	LowGQX	END=175063250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175063251	.	A	.	.	LowGQX	.	GT	./.
chr1	175063252	.	C	.	.	LowGQX	END=175063262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175063263	.	G	.	.	LowGQX	.	GT	./.
chr1	175063264	.	C	.	.	LowGQX	END=175063280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175063281	.	A	.	.	LowGQX	END=175063305	GT	./.
chr1	175063306	.	A	.	.	LowGQX	END=175063391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066551	.	A	.	.	LowGQX	END=175066709	GT	./.
chr1	175066710	.	G	.	.	LowGQX	END=175066711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066712	.	G	.	.	LowGQX	.	GT	./.
chr1	175066713	.	C	.	.	LowGQX	END=175066717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066718	.	C	.	.	LowGQX	END=175066720	GT	./.
chr1	175066721	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066722	.	C	.	.	LowGQX	.	GT	./.
chr1	175066723	.	C	.	.	LowGQX	END=175066724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066725	.	G	.	.	LowGQX	.	GT	./.
chr1	175066726	.	A	.	.	LowGQX	END=175066732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066733	.	T	.	.	LowGQX	.	GT	./.
chr1	175066734	.	G	.	.	LowGQX	END=175066735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066736	.	G	.	.	LowGQX	.	GT	./.
chr1	175066737	.	G	.	.	LowGQX	END=175066740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066741	.	G	.	.	LowGQX	.	GT	./.
chr1	175066742	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066743	.	T	.	.	LowGQX	.	GT	./.
chr1	175066744	.	G	.	.	LowGQX	END=175066745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066746	.	G	.	.	LowGQX	END=175066748	GT	./.
chr1	175066749	.	G	.	.	LowGQX	END=175066756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066757	.	T	.	.	LowGQX	END=175066758	GT	./.
chr1	175066759	.	C	.	.	LowGQX	END=175066765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066766	.	G	.	.	LowGQX	END=175066767	GT	./.
chr1	175066768	.	G	.	.	LowGQX	END=175066773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066774	.	A	.	.	LowGQX	.	GT	./.
chr1	175066775	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066776	.	G	.	.	LowGQX	.	GT	./.
chr1	175066777	.	G	.	.	LowGQX	END=175066778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066779	.	G	.	.	LowGQX	.	GT	./.
chr1	175066780	.	G	.	.	LowGQX	END=175066787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066788	.	G	.	.	LowGQX	END=175066789	GT	./.
chr1	175066790	.	G	.	.	LowGQX	END=175066791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066792	.	A	.	.	LowGQX	END=175066793	GT	./.
chr1	175066794	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066795	.	A	.	.	LowGQX	END=175066796	GT	./.
chr1	175066797	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066798	.	G	.	.	LowGQX	.	GT	./.
chr1	175066799	.	C	.	.	LowGQX	END=175066800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066801	.	G	.	.	LowGQX	.	GT	./.
chr1	175066802	.	A	.	.	LowGQX	END=175066803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066804	.	A	.	.	LowGQX	END=175066808	GT	./.
chr1	175066809	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066810	.	G	.	.	LowGQX	.	GT	./.
chr1	175066811	.	C	.	.	LowGQX	END=175066817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175066818	.	A	.	.	LowGQX	END=175066820	GT	./.
chr1	175066821	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175067466	.	A	.	.	LowGQX	END=175067733	GT	./.
chr1	175086003	.	A	.	.	LowGQX	END=175086150	GT	./.
chr1	175086151	.	G	.	.	LowGQX	END=175086154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086155	.	A	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	175086156	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086157	.	C	.	.	LowGQX	.	GT	./.
chr1	175086158	.	A	.	.	LowGQX	END=175086162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086163	.	C	.	.	LowGQX	.	GT	./.
chr1	175086164	.	A	.	.	LowGQX	END=175086181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086182	.	A	.	.	LowGQX	.	GT	./.
chr1	175086183	.	C	.	.	LowGQX	END=175086184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086185	.	T	.	.	LowGQX	.	GT	./.
chr1	175086186	.	C	.	.	LowGQX	END=175086202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086203	.	A	.	.	LowGQX	END=175086204	GT	./.
chr1	175086205	.	C	.	.	LowGQX	END=175086209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086210	.	A	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	175086211	.	G	.	.	LowGQX	END=175086212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086213	.	T	.	.	LowGQX	END=175086215	GT	./.
chr1	175086216	.	C	.	.	LowGQX	END=175086218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086219	.	T	.	.	LowGQX	.	GT	./.
chr1	175086220	.	G	.	.	LowGQX	END=175086227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086228	.	A	.	.	LowGQX	.	GT	./.
chr1	175086229	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086230	.	C	.	.	LowGQX	.	GT	./.
chr1	175086231	.	A	.	.	LowGQX	END=175086236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086237	.	G	.	.	LowGQX	.	GT	./.
chr1	175086238	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086239	.	A	.	.	LowGQX	.	GT	./.
chr1	175086240	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086241	.	T	.	.	LowGQX	.	GT	./.
chr1	175086242	.	G	.	.	LowGQX	END=175086244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086245	.	C	.	.	LowGQX	.	GT	./.
chr1	175086246	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086247	.	G	.	.	LowGQX	END=175086250	GT	./.
chr1	175086251	.	G	.	.	LowGQX	END=175086253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086254	.	C	.	.	LowGQX	END=175086255	GT	./.
chr1	175086256	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086257	.	A	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	175086258	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086259	.	G	.	.	LowGQX	END=175086261	GT	./.
chr1	175086262	.	G	.	.	LowGQX	END=175086264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086265	.	T	.	.	LowGQX	.	GT	./.
chr1	175086266	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086267	.	T	.	.	LowGQX	END=175086268	GT	./.
chr1	175086269	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086270	.	A	.	.	LowGQX	.	GT	./.
chr1	175086271	.	G	.	.	LowGQX	END=175086272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086273	.	A	.	.	LowGQX	.	GT	./.
chr1	175086274	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086275	.	A	.	.	LowGQX	.	GT	./.
chr1	175086276	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086277	.	G	.	.	LowGQX	.	GT	./.
chr1	175086278	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086279	.	T	.	.	LowGQX	END=175086280	GT	./.
chr1	175086281	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086282	.	A	.	.	LowGQX	END=175086284	GT	./.
chr1	175086285	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086286	.	G	.	.	LowGQX	END=175086287	GT	./.
chr1	175086288	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086289	.	G	.	.	LowGQX	END=175086292	GT	./.
chr1	175086293	.	C	.	.	LowGQX	END=175086294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086295	.	G	.	.	LowGQX	END=175086299	GT	./.
chr1	175086300	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175086301	.	G	.	.	LowGQX	END=175086352	GT	./.
chr1	175087695	.	A	.	.	LowGQX	END=175087962	GT	./.
chr1	175092534	.	A	.	.	LowGQX	END=175092798	GT	./.
chr1	175092799	.	G	.	.	LowGQX	END=175092801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175096089	.	A	.	.	LowGQX	END=175096223	GT	./.
chr1	175097135	.	C	.	.	LowGQX	END=175097302	GT	./.
chr1	175097729	.	A	.	.	LowGQX	END=175097884	GT	./.
chr1	175104979	.	A	.	.	LowGQX	END=175105079	GT	./.
chr1	175105955	.	A	.	.	LowGQX	END=175105995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	175105996	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	175105997	.	G	.	.	LowGQX	END=175106082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175106083	.	A	.	.	LowGQX	END=175106126	GT	./.
chr1	175113521	.	A	.	.	LowGQX	END=175113688	GT	./.
chr1	175116065	.	A	.	.	LowGQX	END=175116209	GT	./.
chr1	175129849	.	A	.	.	LowGQX	END=175130149	GT	./.
chr1	175292491	.	G	.	.	PASS	END=175292510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	175292511	.	C	.	.	PASS	END=175292605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	175292606	.	T	.	.	PASS	END=175292614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	175293490	.	A	.	.	PASS	END=175293498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	175293499	.	T	.	.	PASS	END=175293622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	175293623	.	A	.	.	PASS	END=175293648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	175293649	.	G	.	.	PASS	END=175293657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	175299208	.	A	.	.	PASS	END=175299224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	175299225	.	A	.	.	PASS	END=175299335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:290:99:60
chr1	175299336	.	G	.	.	PASS	END=175299352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	175299353	.	C	.	.	PASS	END=175299363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	175299364	.	G	.	.	PASS	END=175299372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	175299373	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:107:99:60
chr1	175304845	.	A	.	.	PASS	END=175304846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	175304847	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:75:60
chr1	175304848	.	C	.	.	PASS	END=175304884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	175304885	.	C	.	.	PASS	END=175304945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	175306662	.	A	.	.	PASS	END=175306720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:261:99:60
chr1	175306721	.	C	.	.	PASS	END=175306795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:322:99:60
chr1	175306796	.	A	.	.	PASS	END=175306817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr1	175323525	.	A	.	.	PASS	END=175323533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:75:60
chr1	175323534	.	G	.	.	PASS	END=175323549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	175323550	.	A	.	.	PASS	END=175323568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	175323569	.	C	.	.	PASS	END=175323589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	175323590	.	C	.	.	PASS	END=175323661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	175324637	.	A	.	.	PASS	END=175324650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	175324651	.	A	G	1301.31	PASS	BaseQRankSum=0.646;DP=116;Dels=0.00;FS=1.489;HRun=0;HaplotypeScore=7.6808;MQ=60;MQ0=0;MQRankSum=-0.066;QD=11.22;ReadPosRankSum=1.132;SB=-896.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:57,59:116:99:1331,0,1325:60:99:0.509
chr1	175324652	.	T	.	.	PASS	END=175324731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	175324732	.	G	.	.	PASS	END=175324770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	175324771	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:69:99:60
chr1	175325453	.	A	.	.	PASS	END=175325486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	175325487	.	G	.	.	PASS	END=175325517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	175325518	.	C	.	.	PASS	END=175325581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	175325582	.	G	.	.	PASS	END=175325600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	175328696	.	T	.	.	PASS	END=175328723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	175328724	.	A	.	.	PASS	END=175328748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	175328749	.	T	.	.	PASS	END=175328781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	175328782	.	C	.	.	PASS	END=175328868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	175328869	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:85:99:60
chr1	175331797	.	A	.	.	PASS	END=175331812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	175331813	.	G	.	.	PASS	END=175331857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	175331858	.	C	.	.	PASS	END=175331940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	175331941	.	T	.	.	PASS	END=175331947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	175332842	.	A	.	.	PASS	END=175332891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	175332892	.	G	.	.	PASS	END=175332927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	175332928	.	C	.	.	PASS	END=175332965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	175334144	.	A	.	.	PASS	END=175334183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	175334184	.	G	.	.	PASS	END=175334278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	175334279	.	C	.	.	PASS	END=175334390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	175334391	.	T	.	.	PASS	END=175334417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	175335009	.	A	.	.	PASS	END=175335118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	175335119	.	T	.	.	PASS	END=175335152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	175335153	.	C	.	.	PASS	END=175335204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	175335205	.	T	.	.	PASS	END=175335233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr1	175335234	.	C	T	528.17	PASS	BaseQRankSum=1.223;DP=49;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-0.063;QD=10.78;ReadPosRankSum=-1.729;SB=-187.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:29,19:49:99:558,0,676:60:99:0.396
chr1	175335235	.	G	.	.	PASS	END=175335255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	175335256	.	T	.	.	PASS	END=175335276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	175336339	.	C	.	.	PASS	END=175336433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	175336434	.	C	.	.	PASS	END=175336471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	175336472	.	G	.	.	PASS	END=175336481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	175336482	.	T	.	.	PASS	END=175336486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	175336487	.	A	.	.	PASS	END=175336491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	175348686	.	A	.	.	PASS	END=175348722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	175348723	.	C	T	1106.73	PASS	BaseQRankSum=2.671;DP=93;Dels=0.00;FS=1.782;HRun=1;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=0.023;QD=11.90;ReadPosRankSum=3.124;SB=-624.52	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:47,45:93:99:1137,0,1064:60:99:0.489
chr1	175348724	.	T	.	.	PASS	END=175348789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	175348790	.	C	.	.	PASS	END=175348843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	175348844	.	C	.	.	PASS	END=175348873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	175348874	.	C	.	.	PASS	END=175348875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	175355166	.	A	.	.	PASS	END=175355239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	175355240	.	G	.	.	PASS	END=175355276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	175355277	.	C	.	.	PASS	END=175355332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	175355333	.	A	.	.	PASS	END=175355390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	175355391	.	A	G	2718.71	PASS	DP=93;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.7877;MQ=60;MQ0=0;QD=29.23;SB=-597.40	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,93:93:99:2752,214,0:60:99:1.000
chr1	175355392	.	G	.	.	PASS	END=175355417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	175355418	.	C	.	.	PASS	END=175355435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	175355436	.	G	.	.	PASS	END=175355438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	175355439	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:99:60
chr1	175360422	.	A	.	.	PASS	END=175360437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	175360438	.	G	.	.	PASS	END=175360504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	175360505	.	G	.	.	PASS	END=175360556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	175360557	.	C	.	.	PASS	END=175360576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	175362914	.	A	.	.	PASS	END=175363020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	175363021	.	A	.	.	PASS	END=175363033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	175365678	.	A	.	.	PASS	END=175365725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	175365726	.	G	.	.	PASS	END=175365799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	175365800	.	G	.	.	PASS	END=175365945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	175372274	.	A	.	.	PASS	END=175372285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	175372286	.	G	.	.	PASS	END=175372304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	175372305	.	T	.	.	PASS	END=175372388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	175372389	.	A	.	.	PASS	END=175372493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	175372494	.	T	.	.	PASS	END=175372632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	175372633	.	C	.	.	PASS	END=175372690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	175372691	.	G	.	.	PASS	END=175372745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	175372746	.	A	.	.	PASS	END=175372754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	175375350	.	A	.	.	PASS	END=175375368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	175375369	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:48:60
chr1	175375370	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:18:60
chr1	175375371	.	G	.	.	PASS	END=175375390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	175375391	.	G	.	.	PASS	END=175375408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	175375409	.	C	.	.	PASS	END=175375419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	175375420	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:65:60
chr1	175375421	.	G	.	.	PASS	END=175375461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	175375462	.	G	.	.	PASS	END=175375539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:92:60
chr1	175375540	.	T	.	.	PASS	END=175375583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	175375584	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:63:60
chr1	175375585	.	T	.	.	PASS	END=175375599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	175375600	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:60:60
chr1	175375601	.	C	.	.	PASS	END=175375631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	175375632	.	C	.	.	PASS	END=175375682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	175375683	.	T	C	242.93	PASS	BaseQRankSum=0.243;DP=37;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=0.633;QD=6.57;ReadPosRankSum=0.016;SB=-140.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:25,12:37:99:273,0,524:60:99:0.324
chr1	175375684	.	G	.	.	PASS	END=175375694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	175375695	.	G	.	.	PASS	END=175375708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	175375709	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:42:60
chr1	175375710	.	C	.	.	PASS	END=175375720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	175375721	.	A	.	.	PASS	END=175375725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	175375726	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:24:60
chr1	175375727	.	T	.	.	PASS	END=175375735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	175375736	.	T	.	.	PASS	END=175375757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	175375758	.	A	.	.	PASS	END=175375761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:39:60
chr1	175375762	.	T	.	.	PASS	END=175375771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	175375772	.	T	.	.	PASS	END=175375790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	175375791	.	G	.	.	PASS	END=175375801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	175375802	.	T	C	40.89	PASS	BaseQRankSum=-0.538;DP=16;Dels=0.00;FS=2.796;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=0.135;QD=2.56;ReadPosRankSum=-0.673;SB=-12.24	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,3:16:70.88:71,0,320:60:41:0.188
chr1	175375803	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:36:60
chr1	175375804	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:21:60
chr1	175375805	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	175375806	.	A	.	.	LowGQX	END=175375807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	175375808	.	T	.	.	PASS	END=175375809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	175375810	.	A	.	.	LowGQX	END=175375817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	175375818	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	175375819	.	T	.	.	LowGQX	END=175375820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	175375821	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	175375822	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	175375823	.	G	.	.	PASS	END=175375825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	175375826	.	C	.	.	LowGQX	END=175375827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	175375828	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	175375829	.	C	.	.	LowGQX	END=175375837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	175375838	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	175375839	.	A	.	.	LowGQX	END=175375840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:60
chr1	175375841	.	C	.	.	PASS	END=175375844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	175375845	.	C	.	.	LowGQX	END=175375846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	175375847	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	175375848	.	C	.	.	LowGQX	END=175375849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr1	175375850	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	175375851	.	C	.	.	LowGQX	END=175375852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:60
chr1	175911205	.	T	.	.	LowGQX	END=175911212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175911213	.	G	.	.	LowGQX	.	GT	./.
chr1	175911214	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175911215	.	G	.	.	LowGQX	.	GT	./.
chr1	175911216	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175911217	.	T	.	.	LowGQX	.	GT	./.
chr1	175911218	.	A	.	.	LowGQX	END=175911221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175911222	.	C	.	.	LowGQX	END=175911228	GT	./.
chr1	175911229	.	C	.	.	LowGQX	END=175911230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175911231	.	C	.	.	LowGQX	END=175911232	GT	./.
chr1	175911233	.	G	.	.	LowGQX	END=175911240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175911241	.	G	.	.	LowGQX	.	GT	./.
chr1	175911242	.	C	.	.	LowGQX	END=175911246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175911247	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	175911248	.	T	.	.	LowGQX	END=175911250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175911251	.	C	.	.	LowGQX	.	GT	./.
chr1	175911252	.	A	.	.	LowGQX	END=175911253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175911254	.	T	.	.	LowGQX	END=175911304	GT	./.
chr1	175914197	.	A	.	.	PASS	END=175914209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	175914210	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr1	175914211	.	A	.	.	PASS	END=175914233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	175914234	.	T	.	.	PASS	END=175914329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	175914330	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:69:60
chr1	175914331	.	A	.	.	PASS	END=175914347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	175916304	.	A	.	.	PASS	END=175916333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	175916334	.	A	.	.	PASS	END=175916374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	175916375	.	C	.	.	PASS	END=175916403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	175937533	.	G	.	.	LowGQX	END=175937539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175937540	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	175937541	.	G	.	.	LowGQX	END=175937544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175937545	.	G	.	.	LowGQX	.	GT	./.
chr1	175937546	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175937547	.	G	.	.	LowGQX	.	GT	./.
chr1	175937548	.	A	.	.	LowGQX	END=175937549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175937550	.	C	.	.	LowGQX	.	GT	./.
chr1	175937551	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175937552	.	A	.	.	LowGQX	.	GT	./.
chr1	175937553	.	T	.	.	LowGQX	END=175937557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175937558	.	C	.	.	LowGQX	.	GT	./.
chr1	175937559	.	T	.	.	LowGQX	END=175937569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175937570	.	T	.	.	LowGQX	.	GT	./.
chr1	175937571	.	C	.	.	LowGQX	END=175937578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175937579	.	A	.	.	LowGQX	.	GT	./.
chr1	175937580	.	G	.	.	LowGQX	END=175937584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175937585	.	A	.	.	LowGQX	.	GT	./.
chr1	175937586	.	G	.	.	LowGQX	END=175937601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	175937602	.	T	.	.	LowGQX	END=175937676	GT	./.
chr1	175951467	.	C	.	.	LowGQX	END=175951566	GT	./.
chr1	175956077	.	A	.	.	PASS	END=175956106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	175956107	.	G	.	.	PASS	END=175956199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	175956200	.	A	.	.	PASS	END=175956224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	175956225	.	A	.	.	PASS	END=175956241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	175957422	.	A	.	.	PASS	END=175957510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	175957511	.	T	.	.	PASS	END=175957548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	175957549	.	C	.	.	PASS	END=175957550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	175958496	.	A	.	.	PASS	END=175958542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:93:60
chr1	175958543	.	G	.	.	PASS	END=175958600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	175958601	.	A	.	.	PASS	END=175958612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	175958613	.	G	.	.	PASS	END=175958617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	175996706	.	A	.	.	PASS	END=175996757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	175996758	.	C	.	.	PASS	END=175996799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	175996800	.	T	.	.	PASS	END=175996817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	175996818	.	A	.	.	PASS	END=175996826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	176012313	.	A	.	.	PASS	END=176012351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	176012352	.	G	.	.	PASS	END=176012397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	176012398	.	A	.	.	PASS	END=176012412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:91:60
chr1	176012844	.	A	.	.	PASS	END=176012956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:92:60
chr1	176015315	.	A	.	.	PASS	END=176015345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	176015346	.	C	.	.	PASS	END=176015433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	176015434	.	T	.	.	PASS	END=176015494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	176050236	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	176050237	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	176050238	.	A	.	.	LowGQX	END=176050240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	176050241	.	T	.	.	PASS	END=176050246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	176050247	.	A	.	.	LowGQX	END=176050248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	176050249	.	A	.	.	PASS	END=176050250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	176050251	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	176050252	.	C	.	.	PASS	END=176050256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	176050257	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	176050258	.	A	.	.	PASS	END=176050269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	176050270	.	A	.	.	PASS	END=176050277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	176050278	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	176050279	.	A	.	.	PASS	END=176050291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	176050292	.	A	.	.	PASS	END=176050305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	176050306	.	C	.	.	PASS	END=176050323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	176050324	.	G	.	.	PASS	END=176050348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	176050349	.	G	.	.	PASS	END=176050425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	176054910	.	A	.	.	PASS	END=176054937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	176054938	.	A	.	.	PASS	END=176055028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	176069329	.	C	.	.	LowGQX	END=176069497	GT	./.
chr1	176085739	.	G	.	.	PASS	END=176085803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	176085804	.	A	.	.	PASS	END=176085838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	176102960	.	T	.	.	LowGQX	END=176103059	GT	./.
chr1	176104135	.	G	.	.	PASS	END=176104154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	176104155	.	G	.	.	PASS	END=176104210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	176104211	.	G	.	.	PASS	END=176104234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	176105604	.	A	.	.	PASS	END=176105625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	176105626	.	C	.	.	PASS	END=176105663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	176105664	.	T	.	.	PASS	END=176105703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	176118070	.	A	.	.	LowGQX	END=176118079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	176118080	.	C	.	.	LowGQX	END=176118081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	176118082	.	A	.	.	LowGQX	END=176118089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	176118090	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	176118091	.	C	.	.	LowGQX	END=176118092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	176118093	.	G	.	.	PASS	END=176118095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	176118096	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	176118097	.	A	.	.	PASS	END=176118110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	176118111	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	176118112	.	A	.	.	PASS	END=176118132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	176118133	.	A	.	.	PASS	END=176118137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	176118138	.	A	.	.	PASS	END=176118164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	176118165	.	C	.	.	PASS	END=176118198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	176118199	.	T	.	.	PASS	END=176118211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	176118212	.	T	.	.	PASS	END=176118225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	176118226	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	176129358	.	T	.	.	LowGQX	END=176129457	GT	./.
chr1	176132003	.	A	.	.	PASS	END=176132042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	176132043	.	A	.	.	PASS	END=176132103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	176132104	.	T	.	.	PASS	END=176132126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	176132940	.	T	.	.	PASS	END=176132942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	176132943	.	A	.	.	PASS	END=176132946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	176132947	.	A	.	.	PASS	END=176132952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	176132953	.	T	.	.	PASS	END=176132958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	176132959	.	T	.	.	PASS	END=176133039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr1	176137804	.	A	.	.	LowGQX	END=176137903	GT	./.
chr1	176145044	.	A	.	.	PASS	END=176145113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	176145114	.	T	.	.	PASS	END=176145203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:81:60
chr1	176153749	.	A	.	.	PASS	END=176153794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	176153795	.	G	.	.	PASS	END=176153820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	176153821	.	A	.	.	PASS	END=176153848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	176175696	.	C	.	.	PASS	END=176175719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	176175720	.	T	.	.	PASS	END=176175807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	176175808	.	T	.	.	PASS	END=176175833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	176175834	.	C	.	.	PASS	END=176175857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	176175858	.	A	.	.	PASS	END=176175869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	176175870	.	A	.	.	PASS	END=176175895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	176175896	.	G	.	.	PASS	END=176175942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	176175943	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:69:60
chr1	176175944	.	G	.	.	PASS	END=176175969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	176175970	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:75:60
chr1	176175971	.	C	.	.	PASS	END=176175981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	176175982	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:66:60
chr1	176175983	.	C	.	.	PASS	END=176176032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	176176033	.	A	.	.	PASS	END=176176041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:75:60
chr1	176176042	.	T	.	.	PASS	END=176176063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:72:60
chr1	176176064	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:44:28:60
chr1	176176065	.	C	.	.	PASS	END=176176077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	176176078	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:42:60
chr1	176176079	.	A	.	.	PASS	END=176176089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	176176090	.	A	.	.	PASS	END=176176112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	176176113	.	A	.	.	PASS	END=176176116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	176176117	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr1	176176118	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:60:60
chr1	176525457	.	G	.	.	LowGQX	END=176525510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176525511	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	176525512	.	A	.	.	LowGQX	END=176525605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176525606	.	T	.	.	LowGQX	.	GT	./.
chr1	176525607	.	G	.	.	LowGQX	END=176525666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176525667	.	T	.	.	LowGQX	.	GT	./.
chr1	176525668	.	C	.	.	LowGQX	END=176525735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176525736	.	G	.	.	LowGQX	END=176526379	GT	./.
chr1	176563658	.	A	.	.	LowGQX	END=176563921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176563922	.	C	.	.	LowGQX	END=176563998	GT	./.
chr1	176563999	.	G	.	.	LowGQX	END=176564005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176564006	.	C	.	.	LowGQX	.	GT	./.
chr1	176564007	.	C	.	.	LowGQX	END=176564012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176564013	.	A	.	.	LowGQX	.	GT	./.
chr1	176564014	.	C	.	.	LowGQX	END=176564033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176564034	.	G	.	.	LowGQX	.	GT	./.
chr1	176564035	.	C	.	.	LowGQX	END=176564039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176564040	.	C	.	.	LowGQX	.	GT	./.
chr1	176564041	.	C	.	.	LowGQX	END=176564055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176564056	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	176564057	.	G	.	.	LowGQX	END=176564079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176564080	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	176564081	.	G	.	.	LowGQX	END=176564084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176564085	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	176564086	.	A	.	.	LowGQX	END=176564087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176564088	.	G	.	.	LowGQX	.	GT	./.
chr1	176564089	.	A	.	.	LowGQX	END=176564113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176564114	.	G	.	.	LowGQX	.	GT	./.
chr1	176564115	.	A	.	.	LowGQX	END=176564145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176564146	.	C	.	.	LowGQX	.	GT	./.
chr1	176564147	.	C	.	.	LowGQX	END=176564150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176564151	.	A	.	.	LowGQX	.	GT	./.
chr1	176564152	.	G	.	.	LowGQX	END=176564154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176564155	.	A	.	.	LowGQX	END=176564156	GT	./.
chr1	176564157	.	G	.	.	LowGQX	END=176564163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176564164	.	A	.	.	LowGQX	.	GT	./.
chr1	176564165	.	C	.	.	LowGQX	END=176564171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176564172	.	C	.	.	LowGQX	.	GT	./.
chr1	176564173	.	T	.	.	LowGQX	END=176564174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176564175	.	G	.	.	LowGQX	END=176564176	GT	./.
chr1	176564177	.	G	.	.	LowGQX	END=176564187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176564188	.	G	.	.	LowGQX	.	GT	./.
chr1	176564189	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176564190	.	T	.	.	LowGQX	END=176564733	GT	./.
chr1	176640104	.	A	.	.	LowGQX	END=176640108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176640109	.	A	.	.	LowGQX	END=176640253	GT	./.
chr1	176659271	.	A	.	.	LowGQX	END=176659275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659276	.	G	.	.	LowGQX	.	GT	./.
chr1	176659277	.	C	.	.	LowGQX	END=176659307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659308	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	176659309	.	C	.	.	LowGQX	END=176659314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659315	.	A	.	.	LowGQX	END=176659323	GT	./.
chr1	176659324	.	C	.	.	LowGQX	END=176659328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659329	.	A	.	.	LowGQX	.	GT	./.
chr1	176659330	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659331	.	C	.	.	LowGQX	.	GT	./.
chr1	176659332	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659333	.	A	.	.	LowGQX	.	GT	./.
chr1	176659334	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659335	.	G	.	.	LowGQX	.	GT	./.
chr1	176659336	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659337	.	A	.	.	LowGQX	.	GT	./.
chr1	176659338	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659339	.	T	.	.	LowGQX	.	GT	./.
chr1	176659340	.	G	.	.	LowGQX	END=176659342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659343	.	A	.	.	LowGQX	.	GT	./.
chr1	176659344	.	C	.	.	LowGQX	END=176659345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659346	.	T	.	.	LowGQX	.	GT	./.
chr1	176659347	.	G	.	.	LowGQX	END=176659354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659355	.	A	.	.	LowGQX	.	GT	./.
chr1	176659356	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659357	.	T	.	.	LowGQX	.	GT	./.
chr1	176659358	.	C	.	.	LowGQX	END=176659359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659360	.	A	.	.	LowGQX	END=176659362	GT	./.
chr1	176659363	.	A	.	.	LowGQX	END=176659369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659370	.	T	.	.	LowGQX	.	GT	./.
chr1	176659371	.	A	.	.	LowGQX	END=176659374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659375	.	G	.	.	LowGQX	.	GT	./.
chr1	176659376	.	A	.	.	LowGQX	END=176659377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659378	.	T	.	.	LowGQX	.	GT	./.
chr1	176659379	.	C	.	.	LowGQX	END=176659389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659390	.	A	.	.	LowGQX	.	GT	./.
chr1	176659391	.	A	.	.	LowGQX	END=176659396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659397	.	C	.	.	LowGQX	END=176659398	GT	./.
chr1	176659399	.	A	.	.	LowGQX	END=176659400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659401	.	G	.	.	LowGQX	.	GT	./.
chr1	176659402	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659403	.	C	.	.	LowGQX	.	GT	./.
chr1	176659404	.	C	.	.	LowGQX	END=176659406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659407	.	T	.	.	LowGQX	.	GT	./.
chr1	176659408	.	G	.	.	LowGQX	END=176659420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659421	.	G	.	.	LowGQX	.	GT	./.
chr1	176659422	.	C	.	.	LowGQX	END=176659423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659424	.	A	.	.	LowGQX	.	GT	./.
chr1	176659425	.	T	.	.	LowGQX	END=176659426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659427	.	C	.	.	LowGQX	.	GT	./.
chr1	176659428	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659429	.	T	.	.	LowGQX	.	GT	./.
chr1	176659430	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659431	.	G	.	.	LowGQX	.	GT	./.
chr1	176659432	.	A	.	.	LowGQX	END=176659433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659434	.	A	.	.	LowGQX	.	GT	./.
chr1	176659435	.	C	.	.	LowGQX	END=176659436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659437	.	G	.	.	LowGQX	.	GT	./.
chr1	176659438	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659439	.	A	.	.	LowGQX	.	GT	./.
chr1	176659440	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659441	.	A	.	.	LowGQX	END=176659442	GT	./.
chr1	176659443	.	C	.	.	LowGQX	END=176659445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659446	.	T	.	.	LowGQX	.	GT	./.
chr1	176659447	.	G	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	176659448	.	T	.	.	LowGQX	.	GT	./.
chr1	176659449	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659450	.	C	.	.	LowGQX	END=176659451	GT	./.
chr1	176659452	.	G	.	.	LowGQX	END=176659453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659454	.	C	.	.	LowGQX	.	GT	./.
chr1	176659455	.	A	.	.	LowGQX	END=176659456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659457	.	C	.	.	LowGQX	.	GT	./.
chr1	176659458	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659459	.	C	.	.	LowGQX	.	GT	./.
chr1	176659460	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659461	.	C	.	.	LowGQX	END=176659462	GT	./.
chr1	176659463	.	C	.	.	LowGQX	END=176659465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659466	.	T	.	.	LowGQX	END=176659467	GT	./.
chr1	176659468	.	C	.	.	LowGQX	END=176659471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659472	.	G	.	.	LowGQX	.	GT	./.
chr1	176659473	.	A	.	.	LowGQX	END=176659474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659475	.	T	.	.	LowGQX	END=176659496	GT	./.
chr1	176659497	.	C	.	.	LowGQX	END=176659498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659499	.	C	.	.	LowGQX	.	GT	./.
chr1	176659500	.	A	.	.	LowGQX	END=176659506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659507	.	A	.	.	LowGQX	END=176659508	GT	./.
chr1	176659509	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659510	.	C	.	.	LowGQX	END=176659511	GT	./.
chr1	176659512	.	T	.	.	LowGQX	END=176659516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659517	.	C	.	.	LowGQX	END=176659519	GT	./.
chr1	176659520	.	C	.	.	LowGQX	END=176659523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659524	.	C	.	.	LowGQX	.	GT	./.
chr1	176659525	.	G	.	.	LowGQX	END=176659528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659529	.	C	.	.	LowGQX	.	GT	./.
chr1	176659530	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659531	.	C	.	.	LowGQX	.	GT	./.
chr1	176659532	.	A	.	.	LowGQX	END=176659538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659539	.	C	.	.	LowGQX	.	GT	./.
chr1	176659540	.	C	.	.	LowGQX	END=176659544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659545	.	A	.	.	LowGQX	.	GT	./.
chr1	176659546	.	C	.	.	LowGQX	END=176659547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659548	.	A	.	.	LowGQX	END=176659550	GT	./.
chr1	176659551	.	T	.	.	LowGQX	END=176659553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659554	.	A	.	.	LowGQX	.	GT	./.
chr1	176659555	.	T	.	.	LowGQX	END=176659560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659561	.	A	.	.	LowGQX	.	GT	./.
chr1	176659562	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659563	.	A	.	.	LowGQX	.	GT	./.
chr1	176659564	.	C	.	.	LowGQX	END=176659569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659570	.	T	.	.	LowGQX	.	GT	./.
chr1	176659571	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659572	.	A	.	.	LowGQX	.	GT	./.
chr1	176659573	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659574	.	C	.	.	LowGQX	END=176659576	GT	./.
chr1	176659577	.	T	.	.	LowGQX	END=176659579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659580	.	C	.	.	LowGQX	.	GT	./.
chr1	176659581	.	T	.	.	LowGQX	END=176659591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659592	.	T	.	.	LowGQX	.	GT	./.
chr1	176659593	.	C	.	.	LowGQX	END=176659603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659604	.	A	.	.	LowGQX	.	GT	./.
chr1	176659605	.	C	.	.	LowGQX	END=176659619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176659620	.	G	.	.	LowGQX	.	GT	./.
chr1	176659621	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176661260	.	A	.	.	LowGQX	END=176661456	GT	./.
chr1	176664872	.	A	.	.	LowGQX	END=176664997	GT	./.
chr1	176668234	.	A	.	.	LowGQX	END=176668727	GT	./.
chr1	176671741	.	A	.	.	LowGQX	END=176671873	GT	./.
chr1	176675491	.	C	.	.	LowGQX	END=176675590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176679117	.	A	.	.	LowGQX	END=176679314	GT	./.
chr1	176680969	.	A	.	.	LowGQX	END=176681119	GT	./.
chr1	176708760	.	A	.	.	LowGQX	END=176708899	GT	./.
chr1	176709114	.	A	.	.	LowGQX	END=176709334	GT	./.
chr1	176734800	.	A	.	.	LowGQX	END=176734972	GT	./.
chr1	176734973	.	G	.	.	LowGQX	END=176734975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176738691	.	T	.	.	LowGQX	END=176738783	GT	./.
chr1	176738784	.	G	.	.	LowGQX	END=176738788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176738789	.	T	.	.	LowGQX	.	GT	./.
chr1	176738790	.	G	.	.	LowGQX	END=176738922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176740101	.	A	.	.	LowGQX	END=176740318	GT	./.
chr1	176758913	.	T	.	.	LowGQX	END=176759115	GT	./.
chr1	176760481	.	A	.	.	LowGQX	END=176760620	GT	./.
chr1	176762634	.	T	.	.	LowGQX	END=176762807	GT	./.
chr1	176769183	.	G	.	.	LowGQX	END=176769282	GT	./.
chr1	176809307	.	A	.	.	LowGQX	END=176809338	GT	./.
chr1	176809339	.	A	.	.	LowGQX	END=176809366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176809367	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	176809368	.	C	.	.	LowGQX	END=176809371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176809372	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	176809373	.	G	.	.	LowGQX	END=176809374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176809375	.	G	.	.	LowGQX	.	GT	./.
chr1	176809376	.	A	.	.	LowGQX	END=176809378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176809379	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	176809380	.	C	.	.	LowGQX	END=176809382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176809383	.	C	.	.	LowGQX	.	GT	./.
chr1	176809384	.	T	.	.	LowGQX	END=176809399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176809400	.	C	.	.	LowGQX	END=176809401	GT	./.
chr1	176809402	.	A	.	.	LowGQX	END=176809405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176809406	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	176809407	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176809408	.	G	.	.	LowGQX	.	GT	./.
chr1	176809409	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176811504	.	T	.	.	LowGQX	END=176811603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176826717	.	C	.	.	LowGQX	END=176826816	GT	./.
chr1	176833418	.	T	.	.	LowGQX	END=176833659	GT	./.
chr1	176837968	.	T	.	.	LowGQX	END=176837978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176837979	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	176837980	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	176837981	.	T	.	.	LowGQX	END=176837982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176837983	.	G	.	.	LowGQX	.	GT	./.
chr1	176837984	.	G	.	.	LowGQX	END=176837995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176837996	.	C	.	.	LowGQX	.	GT	./.
chr1	176837997	.	C	.	.	LowGQX	END=176838019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176838020	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	176838021	.	A	.	.	LowGQX	END=176838035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176838036	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	176838037	.	T	.	.	LowGQX	END=176838056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176838057	.	C	.	.	LowGQX	END=176838063	GT	./.
chr1	176838064	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838065	.	A	.	.	LowGQX	END=176838067	GT	./.
chr1	176838068	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838069	.	G	.	.	LowGQX	END=176838072	GT	./.
chr1	176838073	.	G	.	.	LowGQX	END=176838076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838077	.	C	.	.	LowGQX	END=176838080	GT	./.
chr1	176838081	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838082	.	T	.	.	LowGQX	END=176838089	GT	./.
chr1	176838090	.	G	.	.	LowGQX	END=176838096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838097	.	T	.	.	LowGQX	.	GT	./.
chr1	176838098	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838099	.	G	.	.	LowGQX	END=176838100	GT	./.
chr1	176838101	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838102	.	G	.	.	LowGQX	.	GT	./.
chr1	176838103	.	G	.	.	LowGQX	END=176838104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838105	.	C	.	.	LowGQX	.	GT	./.
chr1	176838106	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838107	.	G	.	.	LowGQX	END=176838108	GT	./.
chr1	176838109	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838110	.	G	.	.	LowGQX	END=176838111	GT	./.
chr1	176838112	.	T	.	.	LowGQX	END=176838113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838114	.	C	.	.	LowGQX	.	GT	./.
chr1	176838115	.	T	.	.	LowGQX	END=176838117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838118	.	C	.	.	LowGQX	END=176838119	GT	./.
chr1	176838120	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838121	.	C	.	.	LowGQX	.	GT	./.
chr1	176838122	.	T	.	.	LowGQX	END=176838123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838124	.	G	.	.	LowGQX	.	GT	./.
chr1	176838125	.	T	.	.	LowGQX	END=176838128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838129	.	G	.	.	LowGQX	END=176838131	GT	./.
chr1	176838132	.	A	.	.	LowGQX	END=176838138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838139	.	A	.	.	LowGQX	END=176838140	GT	./.
chr1	176838141	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838142	.	T	.	.	LowGQX	.	GT	./.
chr1	176838143	.	T	.	.	LowGQX	END=176838144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838145	.	T	.	.	LowGQX	.	GT	./.
chr1	176838146	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838147	.	G	.	.	LowGQX	.	GT	./.
chr1	176838148	.	A	.	.	LowGQX	END=176838150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838151	.	T	.	.	LowGQX	.	GT	./.
chr1	176838152	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838153	.	G	.	.	LowGQX	.	GT	./.
chr1	176838154	.	T	.	.	LowGQX	END=176838157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838158	.	C	.	.	LowGQX	.	GT	./.
chr1	176838159	.	T	.	.	LowGQX	END=176838163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176838164	.	C	.	.	LowGQX	END=176838165	GT	./.
chr1	176845671	.	A	.	.	LowGQX	END=176845775	GT	./.
chr1	176851993	.	A	.	.	LowGQX	.	GT	./.
chr1	176851994	.	C	.	.	LowGQX	END=176852132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176853473	.	A	.	.	LowGQX	END=176853582	GT	./.
chr1	176853583	.	C	.	.	LowGQX	END=176853597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176853598	.	T	.	.	LowGQX	.	GT	./.
chr1	176853599	.	G	.	.	LowGQX	END=176853628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176857205	.	A	.	.	LowGQX	END=176857342	GT	./.
chr1	176863685	.	C	.	.	LowGQX	END=176863811	GT	./.
chr1	176863812	.	G	.	.	LowGQX	END=176863835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176863836	.	G	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	176863837	.	T	.	.	LowGQX	END=176863866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176863867	.	T	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	176863868	.	G	.	.	LowGQX	END=176863953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176863954	.	G	.	.	LowGQX	END=176863974	GT	./.
chr1	176903286	.	A	.	.	LowGQX	END=176903310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176903311	.	A	.	.	LowGQX	END=176903478	GT	./.
chr1	176905295	.	C	.	.	LowGQX	END=176905373	GT	./.
chr1	176905374	.	G	.	.	LowGQX	END=176905508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176913025	.	A	.	.	LowGQX	END=176913101	GT	./.
chr1	176913102	.	C	.	.	LowGQX	END=176913132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176913133	.	A	.	.	LowGQX	.	GT	./.
chr1	176913134	.	C	.	.	LowGQX	END=176913194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176913195	.	A	.	.	LowGQX	.	GT	./.
chr1	176913196	.	A	.	.	LowGQX	END=176913214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176915060	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176915061	.	C	.	.	LowGQX	END=176915062	GT	./.
chr1	176915063	.	T	.	.	LowGQX	END=176915064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176915065	.	A	.	.	LowGQX	.	GT	./.
chr1	176915066	.	A	.	.	LowGQX	END=176915076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176915077	.	A	.	.	LowGQX	.	GT	./.
chr1	176915078	.	G	.	.	LowGQX	END=176915081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176915082	.	C	.	.	LowGQX	.	GT	./.
chr1	176915083	.	T	.	.	LowGQX	END=176915088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176915089	.	G	.	.	LowGQX	.	GT	./.
chr1	176915090	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176915091	.	A	.	.	LowGQX	.	GT	./.
chr1	176915092	.	G	.	.	LowGQX	END=176915102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176915103	.	G	.	.	LowGQX	.	GT	./.
chr1	176915104	.	G	.	.	LowGQX	END=176915117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176915118	.	A	.	.	LowGQX	.	GT	./.
chr1	176915119	.	C	.	.	LowGQX	END=176915130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176915131	.	T	.	.	LowGQX	.	GT	./.
chr1	176915132	.	C	.	.	LowGQX	END=176915137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176915138	.	A	.	.	LowGQX	.	GT	./.
chr1	176915139	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176915140	.	A	.	.	LowGQX	.	GT	./.
chr1	176915141	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176915142	.	G	.	.	LowGQX	.	GT	./.
chr1	176915143	.	G	.	.	LowGQX	END=176915149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176915150	.	T	.	.	LowGQX	.	GT	./.
chr1	176915151	.	C	.	.	LowGQX	END=176915152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176915153	.	T	.	.	LowGQX	.	GT	./.
chr1	176915154	.	G	.	.	LowGQX	END=176915155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176915156	.	G	.	.	LowGQX	.	GT	./.
chr1	176915157	.	A	.	.	LowGQX	END=176915160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176915161	.	T	.	.	LowGQX	.	GT	./.
chr1	176915162	.	C	.	.	LowGQX	END=176915200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176915201	.	C	.	.	LowGQX	.	GT	./.
chr1	176915202	.	C	.	.	LowGQX	END=176915253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176915254	.	C	.	.	LowGQX	END=176915258	GT	./.
chr1	176918319	.	A	.	.	LowGQX	END=176918460	GT	./.
chr1	176918461	.	C	.	.	LowGQX	END=176918489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176926812	.	A	.	.	LowGQX	END=176926814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176926815	.	A	.	.	LowGQX	.	GT	./.
chr1	176926816	.	C	.	.	LowGQX	END=176926922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176926923	.	A	.	.	LowGQX	.	GT	./.
chr1	176926924	.	C	.	.	LowGQX	END=176926934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176926935	.	T	.	.	LowGQX	.	GT	./.
chr1	176926936	.	C	.	.	LowGQX	END=176926966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176927439	.	T	.	.	LowGQX	END=176927620	GT	./.
chr1	176934287	.	A	.	.	LowGQX	END=176934386	GT	./.
chr1	176983920	.	C	.	.	LowGQX	END=176984019	GT	./.
chr1	176992505	.	C	.	.	LowGQX	END=176992510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176992511	.	G	.	.	LowGQX	.	GT	./.
chr1	176992512	.	T	.	.	LowGQX	END=176992518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176992519	.	C	.	.	LowGQX	.	GT	./.
chr1	176992520	.	T	.	.	LowGQX	END=176992537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176992538	.	A	.	.	LowGQX	.	GT	./.
chr1	176992539	.	C	.	.	LowGQX	END=176992543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176992544	.	T	.	.	LowGQX	.	GT	./.
chr1	176992545	.	T	.	.	LowGQX	END=176992709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176993717	.	A	.	.	LowGQX	END=176993745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176993746	.	G	.	.	LowGQX	.	GT	./.
chr1	176993747	.	C	.	.	LowGQX	END=176993776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176993777	.	G	.	.	LowGQX	.	GT	./.
chr1	176993778	.	A	.	.	LowGQX	END=176993780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176993781	.	T	.	.	LowGQX	.	GT	./.
chr1	176993782	.	G	.	.	LowGQX	END=176993794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176993795	.	G	.	.	LowGQX	.	GT	./.
chr1	176993796	.	A	.	.	LowGQX	END=176993798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176993799	.	C	.	.	LowGQX	.	GT	./.
chr1	176993800	.	C	.	.	LowGQX	END=176993818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176993819	.	G	.	.	LowGQX	END=176993870	GT	./.
chr1	176998439	.	T	.	.	LowGQX	END=176998590	GT	./.
chr1	176998768	.	A	.	.	LowGQX	END=176998779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176998780	.	C	.	.	LowGQX	.	GT	./.
chr1	176998781	.	C	.	.	LowGQX	END=176998817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	176998818	.	G	.	.	LowGQX	.	GT	./.
chr1	176998819	.	G	.	.	LowGQX	END=176998844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176998845	.	A	.	.	LowGQX	.	GT	./.
chr1	176998846	.	A	.	.	LowGQX	END=176998848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176998849	.	C	.	.	LowGQX	END=176998850	GT	./.
chr1	176998851	.	C	.	.	LowGQX	END=176998853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176998854	.	C	.	.	LowGQX	.	GT	./.
chr1	176998855	.	A	.	.	LowGQX	END=176998856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176998857	.	G	.	.	LowGQX	END=176998858	GT	./.
chr1	176998859	.	T	.	.	LowGQX	END=176998860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176998861	.	C	.	.	LowGQX	.	GT	./.
chr1	176998862	.	A	.	.	LowGQX	END=176998870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176998871	.	G	.	.	LowGQX	.	GT	./.
chr1	176998872	.	A	.	.	LowGQX	END=176998878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	176998879	.	T	.	.	LowGQX	.	GT	./.
chr1	176999940	.	A	.	.	LowGQX	END=177000090	GT	./.
chr1	177001590	.	A	.	.	LowGQX	END=177001643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	177001644	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	177001645	.	G	.	.	LowGQX	END=177001735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177001736	.	C	.	.	LowGQX	END=177001987	GT	./.
chr1	177030212	.	A	.	.	LowGQX	END=177030223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	177030224	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	177030225	.	T	.	.	LowGQX	END=177030230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	177030231	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	177030232	.	G	.	.	LowGQX	END=177030234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	177030235	.	C	.	.	LowGQX	END=177030239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	177030240	.	G	.	.	LowGQX	END=177030243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	177030244	.	C	.	.	LowGQX	END=177030250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	177030251	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	177030252	.	C	.	.	LowGQX	END=177030258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	177030259	.	A	.	.	LowGQX	END=177030270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	177030271	.	T	.	.	LowGQX	END=177030275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	177030276	.	T	.	.	LowGQX	END=177030296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	177030297	.	T	.	.	LowGQX	END=177030298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:60
chr1	177030299	.	G	.	.	LowGQX	END=177030303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	177030304	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	177030305	.	C	.	.	LowGQX	END=177030339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	177030340	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	177030341	.	T	.	.	LowGQX	END=177030345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	177030346	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	177030347	.	A	.	.	LowGQX	END=177030359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	177030360	.	T	.	.	LowGQX	END=177030379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	177030380	.	T	.	.	LowGQX	END=177030381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	177030382	.	C	A	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.727;QD=0.79;ReadPosRankSum=0.727;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,1:4:30.30:30,0,61:60:3:0.250
chr1	177030383	.	T	.	.	LowGQX	END=177030403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	177133528	.	A	.	.	LowGQX	END=177133814	GT	./.
chr1	177199011	.	G	.	.	LowGQX	END=177199218	GT	./.
chr1	177199219	.	G	.	.	LowGQX	END=177199234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177199235	.	A	.	.	LowGQX	.	GT	./.
chr1	177199236	.	T	.	.	LowGQX	END=177199237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177199238	.	G	.	.	LowGQX	.	GT	./.
chr1	177199239	.	A	.	.	LowGQX	END=177199244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177199245	.	A	.	.	LowGQX	.	GT	./.
chr1	177199246	.	C	.	.	LowGQX	END=177199247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177199248	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	177199249	.	C	.	.	LowGQX	END=177199257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177199258	.	C	.	.	LowGQX	END=177199259	GT	./.
chr1	177199260	.	C	.	.	LowGQX	END=177199263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177199264	.	C	.	.	LowGQX	END=177199265	GT	./.
chr1	177199266	.	G	.	.	LowGQX	END=177199283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177225053	.	A	.	.	LowGQX	END=177225247	GT	./.
chr1	177226167	.	A	.	.	LowGQX	END=177226522	GT	./.
chr1	177242622	.	A	.	.	LowGQX	END=177242731	GT	./.
chr1	177244254	.	A	.	.	LowGQX	END=177244353	GT	./.
chr1	177245332	.	A	.	.	LowGQX	END=177245572	GT	./.
chr1	177247697	.	A	.	.	LowGQX	END=177247787	GT	./.
chr1	177247788	.	C	.	.	LowGQX	END=177247790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177247791	.	C	.	.	LowGQX	END=177247792	GT	./.
chr1	177247793	.	G	.	.	LowGQX	END=177247804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177247805	.	G	.	.	LowGQX	.	GT	./.
chr1	177247806	.	C	.	.	LowGQX	END=177247808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177247809	.	C	.	.	LowGQX	.	GT	./.
chr1	177247810	.	T	.	.	LowGQX	END=177247831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	177247832	.	G	T	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	177247833	.	T	.	.	LowGQX	END=177247843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	177247844	.	C	.	.	LowGQX	.	GT	./.
chr1	177247845	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	177247846	.	A	.	.	LowGQX	.	GT	./.
chr1	177247847	.	T	.	.	LowGQX	END=177247853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	177247854	.	C	G	14.89	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.45;SB=-25.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	177247855	.	T	.	.	LowGQX	END=177247865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	177247866	.	T	.	.	LowGQX	.	GT	./.
chr1	177247867	.	T	.	.	LowGQX	END=177247877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	177247878	.	A	.	.	LowGQX	.	GT	./.
chr1	177247879	.	A	.	.	LowGQX	END=177247882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	177247883	.	C	.	.	LowGQX	.	GT	./.
chr1	177247884	.	T	.	.	LowGQX	END=177247887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	177247888	.	A	.	.	LowGQX	END=177247889	GT	./.
chr1	177247890	.	C	.	.	LowGQX	END=177247896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	177247897	.	C	.	.	LowGQX	.	GT	./.
chr1	177247898	.	T	.	.	LowGQX	END=177247923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	177249538	.	G	.	.	LowGQX	END=177250001	GT	./.
chr1	177250002	.	G	.	.	LowGQX	END=177250300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250301	.	T	.	.	LowGQX	END=177250390	GT	./.
chr1	177250391	.	C	.	.	LowGQX	END=177250396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250397	.	T	.	.	LowGQX	.	GT	./.
chr1	177250398	.	G	.	.	LowGQX	END=177250409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250410	.	T	.	.	LowGQX	.	GT	./.
chr1	177250411	.	T	.	.	LowGQX	END=177250418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250419	.	C	.	.	LowGQX	.	GT	./.
chr1	177250420	.	A	.	.	LowGQX	END=177250423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250424	.	G	.	.	LowGQX	.	GT	./.
chr1	177250425	.	G	.	.	LowGQX	END=177250427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250428	.	T	.	.	LowGQX	.	GT	./.
chr1	177250429	.	A	.	.	LowGQX	END=177250441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250442	.	A	.	.	LowGQX	.	GT	./.
chr1	177250443	.	G	.	.	LowGQX	END=177250449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250450	.	A	.	.	LowGQX	.	GT	./.
chr1	177250451	.	G	.	.	LowGQX	END=177250455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250456	.	C	.	.	LowGQX	.	GT	./.
chr1	177250457	.	T	.	.	LowGQX	END=177250458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250459	.	C	.	.	LowGQX	.	GT	./.
chr1	177250460	.	A	.	.	LowGQX	END=177250465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250466	.	G	.	.	LowGQX	.	GT	./.
chr1	177250467	.	C	.	.	LowGQX	END=177250491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250492	.	T	.	.	LowGQX	.	GT	./.
chr1	177250493	.	G	.	.	LowGQX	END=177250494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250495	.	A	.	.	LowGQX	END=177250496	GT	./.
chr1	177250497	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250498	.	A	.	.	LowGQX	.	GT	./.
chr1	177250499	.	G	.	.	LowGQX	END=177250500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250501	.	T	.	.	LowGQX	.	GT	./.
chr1	177250502	.	T	.	.	LowGQX	END=177250522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250523	.	A	.	.	LowGQX	.	GT	./.
chr1	177250524	.	C	.	.	LowGQX	END=177250542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250543	.	T	.	.	LowGQX	.	GT	./.
chr1	177250544	.	G	.	.	LowGQX	END=177250545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250546	.	T	.	.	LowGQX	END=177250547	GT	./.
chr1	177250548	.	C	.	.	LowGQX	END=177250549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250550	.	G	.	.	LowGQX	.	GT	./.
chr1	177250551	.	C	.	.	LowGQX	END=177250553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250554	.	C	.	.	LowGQX	.	GT	./.
chr1	177250555	.	G	.	.	LowGQX	END=177250556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250557	.	C	.	.	LowGQX	END=177250558	GT	./.
chr1	177250559	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250560	.	A	.	.	LowGQX	END=177250561	GT	./.
chr1	177250562	.	G	.	.	LowGQX	END=177250568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250569	.	A	.	.	LowGQX	.	GT	./.
chr1	177250570	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250571	.	C	.	.	LowGQX	.	GT	./.
chr1	177250572	.	A	.	.	LowGQX	END=177250576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250577	.	G	.	.	LowGQX	.	GT	./.
chr1	177250578	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250579	.	T	.	.	LowGQX	.	GT	./.
chr1	177250580	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	177250581	.	G	.	.	LowGQX	END=177250584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250585	.	G	.	.	LowGQX	END=177250586	GT	./.
chr1	177250587	.	A	.	.	LowGQX	END=177250590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250591	.	A	.	.	LowGQX	.	GT	./.
chr1	177250592	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250593	.	T	.	.	LowGQX	END=177250594	GT	./.
chr1	177250595	.	C	.	.	LowGQX	END=177250597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250598	.	C	.	.	LowGQX	.	GT	./.
chr1	177250599	.	C	.	.	LowGQX	END=177250610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250611	.	A	.	.	LowGQX	.	GT	./.
chr1	177250612	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250613	.	T	.	.	LowGQX	END=177250614	GT	./.
chr1	177250615	.	C	.	.	LowGQX	END=177250655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250656	.	T	.	.	LowGQX	.	GT	./.
chr1	177250657	.	G	.	.	LowGQX	END=177250663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177250664	.	A	.	.	LowGQX	END=177250666	GT	./.
chr1	177898954	.	T	.	.	LowGQX	END=177898980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177898981	.	G	.	.	LowGQX	END=177899064	GT	./.
chr1	177899679	.	C	.	.	LowGQX	END=177899740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177899741	.	A	.	.	LowGQX	END=177899778	GT	./.
chr1	177901615	.	G	.	.	LowGQX	END=177901618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177901619	.	G	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	177901620	.	C	.	.	LowGQX	END=177901635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177901636	.	A	.	.	LowGQX	.	GT	./.
chr1	177901637	.	C	.	.	LowGQX	END=177901654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177901655	.	G	.	.	LowGQX	.	GT	./.
chr1	177901656	.	C	.	.	LowGQX	END=177901657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177901658	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	177901659	.	G	.	.	LowGQX	END=177901672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177901673	.	G	.	.	LowGQX	.	GT	./.
chr1	177901674	.	C	.	.	LowGQX	END=177901675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177901676	.	G	.	.	LowGQX	.	GT	./.
chr1	177901677	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177901678	.	A	.	.	LowGQX	.	GT	./.
chr1	177901679	.	T	.	.	LowGQX	END=177901685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177901686	.	C	.	.	LowGQX	.	GT	./.
chr1	177901687	.	C	.	.	LowGQX	END=177901688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177901689	.	C	.	.	LowGQX	END=177901714	GT	./.
chr1	177901832	.	C	.	.	LowGQX	END=177901833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177901834	.	T	.	.	LowGQX	.	GT	./.
chr1	177901835	.	C	.	.	LowGQX	END=177901838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177901839	.	C	.	.	LowGQX	.	GT	./.
chr1	177901840	.	C	.	.	LowGQX	END=177901853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177901854	.	T	.	.	LowGQX	.	GT	./.
chr1	177901855	.	A	.	.	LowGQX	END=177901861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177901862	.	G	.	.	LowGQX	.	GT	./.
chr1	177901863	.	G	.	.	LowGQX	END=177901908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177901909	.	A	.	.	LowGQX	END=177902000	GT	./.
chr1	177902348	.	C	.	.	LowGQX	END=177902367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177902368	.	G	.	.	LowGQX	.	GT	./.
chr1	177902369	.	A	.	.	LowGQX	END=177902377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177902378	.	C	.	.	LowGQX	.	GT	./.
chr1	177902379	.	G	.	.	LowGQX	END=177902386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177902387	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	177902388	.	G	.	.	LowGQX	END=177902389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177902390	.	G	.	.	LowGQX	.	GT	./.
chr1	177902391	.	G	.	.	LowGQX	END=177902393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177902394	.	T	.	.	LowGQX	.	GT	./.
chr1	177902395	.	G	.	.	LowGQX	END=177902396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177902397	.	G	.	.	LowGQX	END=177902398	GT	./.
chr1	177902399	.	T	.	.	LowGQX	END=177902400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177902401	.	T	.	.	LowGQX	.	GT	./.
chr1	177902402	.	T	.	.	LowGQX	END=177902406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177902407	.	G	.	.	LowGQX	.	GT	./.
chr1	177902408	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	177902409	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	177902410	.	T	.	.	LowGQX	END=177902447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	177902618	.	C	.	.	LowGQX	END=177902771	GT	./.
chr1	177905417	.	T	.	.	LowGQX	END=177905516	GT	./.
chr1	177906348	.	C	.	.	LowGQX	END=177906349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	177906350	.	A	.	.	LowGQX	.	GT	./.
chr1	177906351	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177906352	.	G	.	.	LowGQX	.	GT	./.
chr1	177906353	.	G	.	.	LowGQX	END=177906357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177906358	.	G	.	.	LowGQX	.	GT	./.
chr1	177906359	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177906360	.	T	.	.	LowGQX	END=177906361	GT	./.
chr1	177906362	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177906363	.	G	.	.	LowGQX	END=177906364	GT	./.
chr1	177906365	.	C	.	.	LowGQX	END=177906366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177906367	.	G	.	.	LowGQX	.	GT	./.
chr1	177906368	.	C	.	.	LowGQX	END=177906369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177906370	.	G	.	.	LowGQX	.	GT	./.
chr1	177906371	.	C	.	.	LowGQX	END=177906372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177906373	.	T	.	.	LowGQX	.	GT	./.
chr1	177906374	.	T	.	.	LowGQX	END=177906382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177906383	.	G	.	.	LowGQX	.	GT	./.
chr1	177906384	.	A	.	.	LowGQX	END=177906386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177906387	.	G	.	.	LowGQX	.	GT	./.
chr1	177906388	.	T	.	.	LowGQX	END=177906395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177906396	.	G	.	.	LowGQX	END=177906397	GT	./.
chr1	177906398	.	G	.	.	LowGQX	END=177906452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177906453	.	G	.	.	LowGQX	.	GT	./.
chr1	177906454	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177906455	.	G	.	.	LowGQX	.	GT	./.
chr1	177906456	.	T	.	.	LowGQX	END=177906484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177906485	.	T	.	.	LowGQX	.	GT	./.
chr1	177906486	.	G	.	.	LowGQX	END=177906489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177906490	.	C	.	.	LowGQX	END=177906589	GT	./.
chr1	177906590	.	G	.	.	LowGQX	END=177906648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177908766	.	A	.	.	LowGQX	END=177908924	GT	./.
chr1	177909744	.	C	.	.	LowGQX	END=177909849	GT	./.
chr1	177911034	.	C	.	.	LowGQX	END=177911175	GT	./.
chr1	177913695	.	C	.	.	LowGQX	END=177913801	GT	./.
chr1	177915454	.	T	.	.	LowGQX	END=177915666	GT	./.
chr1	177916959	.	C	.	.	LowGQX	END=177917077	GT	./.
chr1	177917525	.	C	.	.	LowGQX	END=177917734	GT	./.
chr1	177921040	.	T	.	.	LowGQX	END=177921044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177921045	.	G	.	.	LowGQX	END=177921047	GT	./.
chr1	177921048	.	C	.	.	LowGQX	END=177921051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177921052	.	G	.	.	LowGQX	.	GT	./.
chr1	177921053	.	G	.	.	LowGQX	END=177921054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177921055	.	T	.	.	LowGQX	.	GT	./.
chr1	177921056	.	G	.	.	LowGQX	END=177921057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177921058	.	C	.	.	LowGQX	.	GT	./.
chr1	177921059	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177921060	.	G	.	.	LowGQX	.	GT	./.
chr1	177921061	.	T	.	.	LowGQX	END=177921064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177921065	.	A	.	.	LowGQX	END=177921066	GT	./.
chr1	177921067	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177921068	.	C	.	.	LowGQX	.	GT	./.
chr1	177921069	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177921070	.	C	.	.	LowGQX	END=177921071	GT	./.
chr1	177921072	.	C	.	.	LowGQX	END=177921073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177921074	.	G	.	.	LowGQX	END=177921075	GT	./.
chr1	177921076	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177921077	.	A	.	.	LowGQX	END=177921078	GT	./.
chr1	177921079	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177921080	.	A	.	.	LowGQX	.	GT	./.
chr1	177921081	.	G	.	.	LowGQX	END=177921084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177921085	.	G	.	.	LowGQX	END=177921088	GT	./.
chr1	177921089	.	A	.	.	LowGQX	END=177921091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177921092	.	G	.	.	LowGQX	.	GT	./.
chr1	177921093	.	T	.	.	LowGQX	END=177921095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177921096	.	G	.	.	LowGQX	.	GT	./.
chr1	177921097	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177921098	.	A	.	.	LowGQX	.	GT	./.
chr1	177921099	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177921100	.	T	.	.	LowGQX	END=177921139	GT	./.
chr1	177923413	.	C	.	.	LowGQX	END=177923512	GT	./.
chr1	177927262	.	C	.	.	LowGQX	END=177927497	GT	./.
chr1	177927974	.	C	.	.	LowGQX	END=177927978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177927979	.	T	.	.	LowGQX	.	GT	./.
chr1	177927980	.	T	.	.	LowGQX	END=177927982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177927983	.	G	.	.	LowGQX	.	GT	./.
chr1	177927984	.	G	.	.	LowGQX	END=177927988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177927989	.	A	.	.	LowGQX	.	GT	./.
chr1	177927990	.	A	.	.	LowGQX	END=177927991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177927992	.	G	.	.	LowGQX	.	GT	./.
chr1	177927993	.	G	.	.	LowGQX	END=177928000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177928001	.	A	.	.	LowGQX	.	GT	./.
chr1	177928002	.	G	.	.	LowGQX	END=177928005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177928006	.	T	.	.	LowGQX	.	GT	./.
chr1	177928007	.	G	.	.	LowGQX	END=177928036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177928037	.	G	.	.	LowGQX	.	GT	./.
chr1	177928038	.	T	.	.	LowGQX	END=177928106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177928107	.	T	.	.	LowGQX	END=177928253	GT	./.
chr1	177929458	.	A	.	.	LowGQX	END=177929557	GT	./.
chr1	177929925	.	C	.	.	LowGQX	END=177930027	GT	./.
chr1	177930028	.	A	.	.	LowGQX	END=177930077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	177930724	.	C	.	.	LowGQX	END=177930923	GT	./.
chr1	177933305	.	C	.	.	LowGQX	END=177933414	GT	./.
chr1	177934181	.	C	.	.	LowGQX	END=177934302	GT	./.
chr1	177935027	.	C	.	.	LowGQX	END=177935140	GT	./.
chr1	177936817	.	C	.	.	LowGQX	END=177937116	GT	./.
chr1	178062133	.	T	.	.	LowGQX	END=178062209	GT	./.
chr1	178062210	.	A	.	.	LowGQX	END=178062214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	178062215	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	178062216	.	T	.	.	LowGQX	END=178062226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	178062227	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	178062228	.	A	.	.	LowGQX	END=178062323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	178062324	.	G	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr1	178062325	.	C	.	.	LowGQX	END=178062453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178063627	.	C	.	.	LowGQX	END=178063831	GT	./.
chr1	178252697	.	A	.	.	LowGQX	END=178252828	GT	./.
chr1	178269125	.	A	.	.	LowGQX	END=178269255	GT	./.
chr1	178310688	.	C	.	.	LowGQX	END=178310761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	178310762	.	T	.	.	LowGQX	END=178310787	GT	./.
chr1	178359233	.	A	.	.	LowGQX	END=178359294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178359295	.	A	.	.	LowGQX	END=178359343	GT	./.
chr1	178389644	.	A	.	.	LowGQX	END=178389759	GT	./.
chr1	178408555	.	A	.	.	LowGQX	END=178408712	GT	./.
chr1	178410682	.	A	.	.	LowGQX	END=178410784	GT	./.
chr1	178411808	.	A	.	.	LowGQX	END=178412262	GT	./.
chr1	178412263	.	A	.	.	LowGQX	END=178412366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	178414651	.	A	.	.	LowGQX	END=178414799	GT	./.
chr1	178420704	.	A	.	.	LowGQX	END=178420852	GT	./.
chr1	178421549	.	A	.	.	LowGQX	END=178421789	GT	./.
chr1	178423580	.	A	.	.	LowGQX	END=178423785	GT	./.
chr1	178425833	.	A	.	.	LowGQX	END=178426036	GT	./.
chr1	178426816	.	A	.	.	LowGQX	END=178427681	GT	./.
chr1	178433411	.	A	.	.	LowGQX	END=178433478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178433479	.	A	.	.	LowGQX	END=178433549	GT	./.
chr1	178435053	.	A	.	.	LowGQX	END=178435259	GT	./.
chr1	178436463	.	T	.	.	LowGQX	END=178436562	GT	./.
chr1	178439793	.	G	.	.	LowGQX	END=178439869	GT	./.
chr1	178439870	.	C	.	.	LowGQX	END=178439874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178439875	.	T	.	.	LowGQX	.	GT	./.
chr1	178439876	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178439877	.	C	.	.	LowGQX	END=178439878	GT	./.
chr1	178439879	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178439880	.	T	.	.	LowGQX	.	GT	./.
chr1	178439881	.	C	.	.	LowGQX	END=178439884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178439885	.	A	.	.	LowGQX	END=178439886	GT	./.
chr1	178439887	.	C	.	.	LowGQX	END=178439888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178439889	.	G	.	.	LowGQX	.	GT	./.
chr1	178439890	.	A	.	.	LowGQX	END=178439892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178442208	.	A	.	.	LowGQX	END=178442417	GT	./.
chr1	178482305	.	C	.	.	LowGQX	END=178482404	GT	./.
chr1	178483160	.	A	.	.	LowGQX	END=178483320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178483820	.	T	.	.	LowGQX	END=178483919	GT	./.
chr1	178484973	.	T	.	.	LowGQX	END=178485072	GT	./.
chr1	178485720	.	T	.	.	LowGQX	END=178485819	GT	./.
chr1	178489490	.	T	.	.	LowGQX	END=178489589	GT	./.
chr1	178489627	.	T	.	.	LowGQX	END=178489726	GT	./.
chr1	178489806	.	A	.	.	LowGQX	END=178490072	GT	./.
chr1	178490329	.	T	.	.	LowGQX	END=178490428	GT	./.
chr1	178490674	.	G	.	.	LowGQX	END=178490728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178490729	.	A	.	.	LowGQX	.	GT	./.
chr1	178490730	.	C	.	.	LowGQX	END=178490745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178490746	.	C	.	.	LowGQX	.	GT	./.
chr1	178490747	.	T	.	.	LowGQX	END=178490749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178490750	.	C	.	.	LowGQX	.	GT	./.
chr1	178490751	.	T	.	.	LowGQX	END=178490770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178490771	.	A	.	.	LowGQX	.	GT	./.
chr1	178490772	.	A	.	.	LowGQX	END=178490773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178490783	.	A	.	.	LowGQX	END=178490789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178490790	.	A	.	.	LowGQX	END=178490836	GT	./.
chr1	178490837	.	T	.	.	LowGQX	END=178490876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	178490877	.	T	.	.	LowGQX	.	GT	./.
chr1	178490878	.	C	.	.	LowGQX	END=178490882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178491458	.	A	.	.	LowGQX	END=178491496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178491497	.	T	.	.	LowGQX	.	GT	./.
chr1	178491498	.	G	.	.	LowGQX	END=178491500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178491501	.	G	.	.	LowGQX	.	GT	./.
chr1	178491502	.	A	.	.	LowGQX	END=178491525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178491526	.	C	.	.	LowGQX	END=178491577	GT	./.
chr1	178492346	.	G	.	.	LowGQX	END=178492505	GT	./.
chr1	178494505	.	G	.	.	LowGQX	END=178494516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178494517	.	A	.	.	LowGQX	END=178494518	GT	./.
chr1	178494519	.	G	.	.	LowGQX	END=178494527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178494528	.	T	.	.	LowGQX	.	GT	./.
chr1	178494529	.	C	.	.	LowGQX	END=178494537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178494538	.	A	.	.	LowGQX	.	GT	./.
chr1	178494539	.	C	.	.	LowGQX	END=178494604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178499234	.	G	.	.	LowGQX	END=178499333	GT	./.
chr1	178500630	.	C	.	.	LowGQX	END=178500695	GT	./.
chr1	178500696	.	A	.	.	LowGQX	END=178500729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514055	.	G	.	.	LowGQX	END=178514056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514057	.	T	.	.	LowGQX	.	GT	./.
chr1	178514058	.	G	.	.	LowGQX	END=178514059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514060	.	C	.	.	LowGQX	.	GT	./.
chr1	178514061	.	G	.	.	LowGQX	END=178514065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514066	.	C	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	178514067	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514068	.	C	.	.	LowGQX	END=178514072	GT	./.
chr1	178514073	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514074	.	C	.	.	LowGQX	.	GT	./.
chr1	178514075	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514076	.	C	.	.	LowGQX	END=178514078	GT	./.
chr1	178514079	.	A	.	.	LowGQX	END=178514080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514081	.	T	.	.	LowGQX	END=178514082	GT	./.
chr1	178514083	.	A	.	.	LowGQX	END=178514085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514086	.	G	.	.	LowGQX	.	GT	./.
chr1	178514087	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514088	.	A	.	.	LowGQX	.	GT	./.
chr1	178514089	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514090	.	G	.	.	LowGQX	END=178514091	GT	./.
chr1	178514092	.	G	.	.	LowGQX	END=178514093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514094	.	G	.	.	LowGQX	END=178514095	GT	./.
chr1	178514096	.	A	.	.	LowGQX	END=178514098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514099	.	T	.	.	LowGQX	.	GT	./.
chr1	178514100	.	G	.	.	LowGQX	END=178514103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514104	.	T	.	.	LowGQX	.	GT	./.
chr1	178514105	.	T	.	.	LowGQX	END=178514114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514115	.	T	.	.	LowGQX	.	GT	./.
chr1	178514116	.	C	.	.	LowGQX	END=178514120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514121	.	A	.	.	LowGQX	.	GT	./.
chr1	178514122	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514123	.	A	.	.	LowGQX	.	GT	./.
chr1	178514124	.	T	.	.	LowGQX	END=178514131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514132	.	C	.	.	LowGQX	.	GT	./.
chr1	178514133	.	T	.	.	LowGQX	END=178514135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514136	.	C	.	.	LowGQX	.	GT	./.
chr1	178514137	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514138	.	A	.	.	LowGQX	END=178514140	GT	./.
chr1	178514141	.	C	.	.	LowGQX	END=178514153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514154	.	T	.	.	LowGQX	.	GT	./.
chr1	178514155	.	G	.	.	LowGQX	END=178514158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514159	.	T	.	.	LowGQX	.	GT	./.
chr1	178514160	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514161	.	C	.	.	LowGQX	.	GT	./.
chr1	178514162	.	A	.	.	LowGQX	END=178514163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178514347	.	G	.	.	LowGQX	END=178514560	GT	./.
chr1	178514613	.	C	.	.	LowGQX	END=178515021	GT	./.
chr1	178745879	.	T	.	.	LowGQX	END=178745887	GT	./.
chr1	178745888	.	G	.	.	LowGQX	END=178745905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178745906	.	C	.	.	LowGQX	.	GT	./.
chr1	178745907	.	T	.	.	LowGQX	END=178745967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178745968	.	A	.	.	LowGQX	.	GT	./.
chr1	178745969	.	A	.	.	LowGQX	END=178745973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178745974	.	C	.	.	LowGQX	.	GT	./.
chr1	178745975	.	T	.	.	LowGQX	END=178745976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178745977	.	G	.	.	LowGQX	.	GT	./.
chr1	178745978	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178753551	.	A	.	.	LowGQX	END=178753610	GT	./.
chr1	178753611	.	A	.	.	LowGQX	END=178753613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178753614	.	C	.	.	LowGQX	.	GT	./.
chr1	178753615	.	T	.	.	LowGQX	END=178753641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178753642	.	A	.	.	LowGQX	.	GT	./.
chr1	178753643	.	C	.	.	LowGQX	END=178753659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	178754668	.	T	.	.	LowGQX	END=178754767	GT	./.
chr1	178777108	.	T	.	.	LowGQX	END=178777271	GT	./.
chr1	178780385	.	A	.	.	LowGQX	END=178780597	GT	./.
chr1	178790744	.	C	.	.	LowGQX	END=178790794	GT	./.
chr1	178790795	.	G	.	.	LowGQX	END=178790843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178802557	.	A	.	.	LowGQX	END=178802561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178802562	.	T	.	.	LowGQX	.	GT	./.
chr1	178802563	.	T	.	.	LowGQX	END=178802564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178802565	.	A	.	.	LowGQX	.	GT	./.
chr1	178802566	.	G	.	.	LowGQX	END=178802586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178802587	.	T	.	.	LowGQX	.	GT	./.
chr1	178802588	.	T	.	.	LowGQX	END=178802603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178802604	.	G	.	.	LowGQX	END=178802605	GT	./.
chr1	178802606	.	A	.	.	LowGQX	END=178802607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178802608	.	T	.	.	LowGQX	.	GT	./.
chr1	178802609	.	G	.	.	LowGQX	END=178802610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178802611	.	G	.	.	LowGQX	END=178802612	GT	./.
chr1	178802613	.	A	.	.	LowGQX	END=178802620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178802621	.	T	.	.	LowGQX	.	GT	./.
chr1	178802622	.	A	.	.	LowGQX	END=178802639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178802640	.	G	.	.	LowGQX	.	GT	./.
chr1	178802641	.	A	.	.	LowGQX	END=178802649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178802650	.	G	.	.	LowGQX	.	GT	./.
chr1	178802651	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178802652	.	A	.	.	LowGQX	END=178802667	GT	./.
chr1	178802668	.	C	.	.	LowGQX	END=178802726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178820262	.	C	.	.	LowGQX	END=178820453	GT	./.
chr1	178821816	.	A	.	.	LowGQX	END=178822090	GT	./.
chr1	178822727	.	A	.	.	LowGQX	END=178822924	GT	./.
chr1	178834087	.	A	.	.	LowGQX	END=178834663	GT	./.
chr1	178834664	.	A	.	.	LowGQX	END=178834672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178834673	.	A	.	.	LowGQX	.	GT	./.
chr1	178834674	.	T	.	.	LowGQX	END=178834720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178834721	.	A	.	.	LowGQX	.	GT	./.
chr1	178834722	.	T	.	.	LowGQX	END=178834732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178834733	.	A	.	.	LowGQX	.	GT	./.
chr1	178834734	.	T	.	.	LowGQX	END=178834737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178834738	.	T	.	.	LowGQX	.	GT	./.
chr1	178834739	.	T	.	.	LowGQX	END=178834751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178834752	.	G	.	.	LowGQX	.	GT	./.
chr1	178834753	.	G	.	.	LowGQX	END=178834792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178834793	.	G	.	.	LowGQX	.	GT	./.
chr1	178834794	.	T	.	.	LowGQX	END=178834797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178834798	.	A	.	.	LowGQX	.	GT	./.
chr1	178834799	.	C	.	.	LowGQX	END=178834801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178834802	.	G	.	.	LowGQX	END=178834803	GT	./.
chr1	178834804	.	G	.	.	LowGQX	END=178834809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178834810	.	T	.	.	LowGQX	.	GT	./.
chr1	178834811	.	C	.	.	LowGQX	END=178834812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178834813	.	C	.	.	LowGQX	END=178834909	GT	./.
chr1	178834910	.	A	.	.	LowGQX	END=178834913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178846631	.	A	.	.	LowGQX	END=178846632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178846633	.	G	.	.	LowGQX	.	GT	./.
chr1	178846634	.	T	.	.	LowGQX	END=178846681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178846682	.	T	.	.	LowGQX	END=178846810	GT	./.
chr1	178847975	.	A	.	.	LowGQX	END=178848134	GT	./.
chr1	178852585	.	T	.	.	LowGQX	END=178852684	GT	./.
chr1	178854209	.	A	.	.	LowGQX	END=178854315	GT	./.
chr1	178854316	.	G	.	.	LowGQX	END=178854389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178855102	.	A	.	.	LowGQX	END=178855301	GT	./.
chr1	178858695	.	A	.	.	LowGQX	END=178858854	GT	./.
chr1	178861354	.	G	.	.	LowGQX	END=178861453	GT	./.
chr1	178863002	.	G	.	.	LowGQX	END=178863161	GT	./.
chr1	178866796	.	C	.	.	LowGQX	END=178866895	GT	./.
chr1	178871239	.	A	.	.	LowGQX	END=178871269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178871270	.	T	.	.	LowGQX	.	GT	./.
chr1	178871271	.	G	.	.	LowGQX	END=178871279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178871280	.	T	.	.	LowGQX	.	GT	./.
chr1	178871281	.	G	.	.	LowGQX	END=178871283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178871284	.	T	.	.	LowGQX	.	GT	./.
chr1	178871285	.	G	.	.	LowGQX	END=178871286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	178871287	.	T	.	.	LowGQX	END=178871348	GT	./.
chr1	178875839	.	T	.	.	LowGQX	END=178876057	GT	./.
chr1	178885430	.	T	.	.	LowGQX	END=178885529	GT	./.
chr1	179012981	.	A	.	.	LowGQX	END=179013361	GT	./.
chr1	179019408	.	T	.	.	LowGQX	END=179019507	GT	./.
chr1	179023662	.	A	.	.	LowGQX	END=179023775	GT	./.
chr1	179033060	.	A	.	.	LowGQX	END=179033235	GT	./.
chr1	179033438	.	A	.	.	LowGQX	END=179033633	GT	./.
chr1	179035915	.	A	.	.	LowGQX	END=179036014	GT	./.
chr1	179041046	.	A	.	.	LowGQX	END=179041235	GT	./.
chr1	179041236	.	A	.	.	LowGQX	END=179041276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179041277	.	T	.	.	LowGQX	.	GT	./.
chr1	179041278	.	A	.	.	LowGQX	END=179041281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179051251	.	C	.	.	LowGQX	END=179051263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179051264	.	A	.	.	LowGQX	.	GT	./.
chr1	179051265	.	T	.	.	LowGQX	END=179051285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179051286	.	A	.	.	LowGQX	.	GT	./.
chr1	179051287	.	G	.	.	LowGQX	END=179051297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179051298	.	T	.	.	LowGQX	.	GT	./.
chr1	179051299	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179051300	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	179051301	.	T	.	.	LowGQX	END=179051327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179051328	.	A	.	.	LowGQX	END=179051381	GT	./.
chr1	179051382	.	G	.	.	LowGQX	END=179051473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179051474	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	179051475	.	G	.	.	LowGQX	END=179051487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	179051488	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	179051489	.	G	.	.	LowGQX	END=179051500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179051501	.	G	.	.	LowGQX	.	GT	./.
chr1	179051502	.	A	.	.	LowGQX	END=179051521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179051522	.	G	.	.	LowGQX	.	GT	./.
chr1	179051523	.	G	.	.	LowGQX	END=179051530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179051820	.	C	.	.	LowGQX	END=179051823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179051824	.	G	.	.	LowGQX	END=179051919	GT	./.
chr1	179052073	.	A	.	.	LowGQX	END=179052190	GT	./.
chr1	179054714	.	A	.	.	LowGQX	END=179054754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	179054755	.	G	.	.	LowGQX	END=179054796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	179054797	.	C	.	.	LowGQX	END=179054911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	179054912	.	T	.	.	LowGQX	END=179054926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	179054927	.	C	.	.	LowGQX	.	GT	./.
chr1	179054928	.	T	.	.	LowGQX	END=179054934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179054935	.	G	.	.	LowGQX	.	GT	./.
chr1	179054936	.	A	.	.	LowGQX	END=179054961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179054962	.	T	.	.	LowGQX	END=179055030	GT	./.
chr1	179057044	.	A	.	.	LowGQX	END=179057226	GT	./.
chr1	179063226	.	A	.	.	LowGQX	END=179063354	GT	./.
chr1	179064101	.	A	.	.	LowGQX	END=179064204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179064205	.	A	.	.	LowGQX	END=179064355	GT	./.
chr1	179066947	.	T	.	.	LowGQX	END=179067046	GT	./.
chr1	179076851	.	G	.	.	LowGQX	END=179076878	GT	./.
chr1	179076879	.	C	.	.	LowGQX	END=179076891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179076892	.	C	.	.	LowGQX	.	GT	./.
chr1	179076893	.	A	.	.	LowGQX	END=179076930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179076931	.	A	.	.	LowGQX	.	GT	./.
chr1	179076932	.	G	.	.	LowGQX	END=179077080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179077081	.	G	.	.	LowGQX	END=179078578	GT	./.
chr1	179079355	.	A	.	.	LowGQX	END=179079408	GT	./.
chr1	179079409	.	A	.	.	LowGQX	END=179079410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079411	.	C	.	.	LowGQX	.	GT	./.
chr1	179079412	.	C	.	.	LowGQX	END=179079421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079422	.	G	.	.	LowGQX	.	GT	./.
chr1	179079423	.	C	.	.	LowGQX	END=179079461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079462	.	C	.	.	LowGQX	.	GT	./.
chr1	179079463	.	T	.	.	LowGQX	END=179079480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179079481	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	179079482	.	T	.	.	LowGQX	END=179079492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179079493	.	C	.	.	LowGQX	.	GT	./.
chr1	179079494	.	T	.	.	LowGQX	END=179079528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179079529	.	C	.	.	LowGQX	.	GT	./.
chr1	179079530	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179079531	.	G	.	.	LowGQX	.	GT	./.
chr1	179079532	.	G	.	.	LowGQX	END=179079580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079581	.	T	.	.	LowGQX	.	GT	./.
chr1	179079582	.	C	.	.	LowGQX	END=179079585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079586	.	T	.	.	LowGQX	.	GT	./.
chr1	179079587	.	A	.	.	LowGQX	END=179079588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079589	.	C	.	.	LowGQX	.	GT	./.
chr1	179079590	.	T	.	.	LowGQX	END=179079591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079592	.	T	.	.	LowGQX	.	GT	./.
chr1	179079910	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079911	.	T	.	.	LowGQX	.	GT	./.
chr1	179079912	.	A	.	.	LowGQX	END=179079913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079914	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	179079915	.	A	.	.	LowGQX	.	GT	./.
chr1	179079916	.	T	.	.	LowGQX	END=179079917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079918	.	A	.	.	LowGQX	.	GT	./.
chr1	179079919	.	T	.	.	LowGQX	END=179079924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079925	.	T	.	.	LowGQX	.	GT	./.
chr1	179079926	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079927	.	T	.	.	LowGQX	.	GT	./.
chr1	179079928	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079929	.	T	.	.	LowGQX	.	GT	./.
chr1	179079930	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079931	.	T	.	.	LowGQX	.	GT	./.
chr1	179079932	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079933	.	T	.	.	LowGQX	.	GT	./.
chr1	179079934	.	T	.	.	LowGQX	END=179079943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079944	.	A	.	.	LowGQX	END=179079945	GT	./.
chr1	179079946	.	T	.	.	LowGQX	END=179079950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079951	.	T	.	.	LowGQX	.	GT	./.
chr1	179079952	.	G	.	.	LowGQX	END=179079956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079957	.	T	.	.	LowGQX	.	GT	./.
chr1	179079958	.	C	.	.	LowGQX	END=179079959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079960	.	G	.	.	LowGQX	.	GT	./.
chr1	179079961	.	A	.	.	LowGQX	END=179079962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079963	.	T	.	.	LowGQX	.	GT	./.
chr1	179079964	.	G	.	.	LowGQX	END=179079966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079967	.	A	.	.	LowGQX	.	GT	./.
chr1	179079968	.	C	.	.	LowGQX	END=179079995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179079996	.	G	.	.	LowGQX	END=179080009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	179081439	.	C	.	.	LowGQX	END=179081538	GT	./.
chr1	179084011	.	A	.	.	LowGQX	END=179084167	GT	./.
chr1	179086399	.	C	.	.	LowGQX	END=179086518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179086519	.	T	.	.	LowGQX	END=179086555	GT	./.
chr1	179086556	.	G	.	.	LowGQX	END=179086653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179087720	.	A	.	.	LowGQX	END=179087787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179087788	.	A	.	.	LowGQX	END=179087901	GT	./.
chr1	179089318	.	T	.	.	LowGQX	END=179089417	GT	./.
chr1	179090728	.	A	.	.	LowGQX	END=179090758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179090759	.	T	.	.	LowGQX	END=179090866	GT	./.
chr1	179090867	.	A	.	.	LowGQX	END=179090899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179090900	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	179090901	.	T	.	.	LowGQX	END=179090945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179090946	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	179090947	.	T	.	.	LowGQX	END=179090950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179090951	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	179090952	.	G	.	.	LowGQX	END=179090953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179090954	.	G	.	.	LowGQX	END=179090955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	179090956	.	A	.	4.69	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.01:60:0
chr1	179090957	.	C	.	.	LowGQX	END=179090969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	179090970	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	179090971	.	G	.	.	LowGQX	END=179090973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	179090974	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	179090975	.	T	.	.	LowGQX	END=179090999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	179091000	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	179091001	.	A	.	.	LowGQX	END=179091004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	179095510	.	A	.	.	LowGQX	END=179095809	GT	./.
chr1	179100444	.	A	.	.	LowGQX	END=179100472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179100473	.	C	.	.	LowGQX	END=179100618	GT	./.
chr1	179102429	.	C	.	.	LowGQX	END=179102505	GT	./.
chr1	179102506	.	T	.	.	LowGQX	END=179102510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179102511	.	T	.	.	LowGQX	.	GT	./.
chr1	179102512	.	A	.	.	LowGQX	END=179102526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179102527	.	T	.	.	LowGQX	.	GT	./.
chr1	179102528	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179112066	.	A	.	.	LowGQX	END=179112181	GT	./.
chr1	179198353	.	T	.	.	LowGQX	END=179198534	GT	./.
chr1	179271818	.	C	.	.	LowGQX	END=179271939	GT	./.
chr1	179292552	.	A	.	.	LowGQX	END=179292651	GT	./.
chr1	179304639	.	A	.	.	LowGQX	END=179304662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179304663	.	A	.	.	LowGQX	.	GT	./.
chr1	179304664	.	G	.	.	LowGQX	END=179304749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179304750	.	C	.	.	LowGQX	.	GT	./.
chr1	179304751	.	C	.	.	LowGQX	END=179304794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179306952	.	T	.	.	LowGQX	END=179307051	GT	./.
chr1	179308571	.	A	.	.	LowGQX	END=179308662	GT	./.
chr1	179308663	.	T	.	.	LowGQX	END=179308682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179310161	.	A	.	.	LowGQX	END=179310447	GT	./.
chr1	179311239	.	G	.	.	LowGQX	END=179311338	GT	./.
chr1	179311988	.	C	.	.	LowGQX	END=179312087	GT	./.
chr1	179312698	.	C	.	.	LowGQX	END=179312797	GT	./.
chr1	179314080	.	A	.	.	LowGQX	END=179314213	GT	./.
chr1	179316733	.	A	.	.	LowGQX	END=179316834	GT	./.
chr1	179317977	.	A	.	.	LowGQX	END=179318079	GT	./.
chr1	179319429	.	A	.	.	LowGQX	END=179319568	GT	./.
chr1	179320450	.	A	.	.	LowGQX	END=179320599	GT	./.
chr1	179322648	.	C	.	.	LowGQX	END=179322757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179322758	.	T	.	.	LowGQX	END=179322798	GT	./.
chr1	179335643	.	T	.	.	LowGQX	END=179335655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179335656	.	G	.	.	LowGQX	END=179335657	GT	./.
chr1	179335658	.	A	.	.	LowGQX	END=179335659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179335660	.	A	.	.	LowGQX	.	GT	./.
chr1	179335661	.	C	.	.	LowGQX	END=179335668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179335669	.	A	.	.	LowGQX	.	GT	./.
chr1	179335670	.	C	.	.	LowGQX	END=179335671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179335672	.	C	.	.	LowGQX	.	GT	./.
chr1	179335673	.	C	.	.	LowGQX	END=179335689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179335690	.	A	.	.	LowGQX	.	GT	./.
chr1	179335691	.	C	.	.	LowGQX	END=179335711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179335712	.	A	.	.	LowGQX	.	GT	./.
chr1	179335713	.	A	.	.	LowGQX	END=179335743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179337933	.	A	.	.	LowGQX	END=179338109	GT	./.
chr1	179339108	.	A	.	.	LowGQX	END=179339215	GT	./.
chr1	179347770	.	A	.	.	LowGQX	END=179347804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179347805	.	C	.	.	LowGQX	.	GT	./.
chr1	179347806	.	A	.	.	LowGQX	END=179347807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179347808	.	A	.	.	LowGQX	.	GT	./.
chr1	179347809	.	G	.	.	LowGQX	END=179347841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179347842	.	C	.	.	LowGQX	.	GT	./.
chr1	179347843	.	A	.	.	LowGQX	END=179347848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179347849	.	C	.	.	LowGQX	.	GT	./.
chr1	179347850	.	C	.	.	LowGQX	END=179347860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179347861	.	A	.	.	LowGQX	.	GT	./.
chr1	179347862	.	G	.	.	LowGQX	END=179347863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179347864	.	C	.	.	LowGQX	.	GT	./.
chr1	179347865	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179347866	.	C	.	.	LowGQX	.	GT	./.
chr1	179347867	.	A	.	.	LowGQX	END=179347871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179347872	.	G	.	.	LowGQX	.	GT	./.
chr1	179347873	.	G	.	.	LowGQX	END=179347880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179347881	.	G	.	.	LowGQX	.	GT	./.
chr1	179347882	.	T	.	.	LowGQX	END=179347885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179347886	.	C	.	.	LowGQX	END=179347894	GT	./.
chr1	179348470	.	C	.	.	LowGQX	END=179348624	GT	./.
chr1	179351814	.	T	.	.	LowGQX	END=179351913	GT	./.
chr1	179352575	.	A	.	.	LowGQX	END=179352624	GT	./.
chr1	179352625	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179352626	.	A	.	.	LowGQX	.	GT	./.
chr1	179352627	.	C	.	.	LowGQX	END=179352630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179352631	.	G	.	.	LowGQX	.	GT	./.
chr1	179352632	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179352633	.	T	.	.	LowGQX	.	GT	./.
chr1	179352634	.	A	.	.	LowGQX	END=179352635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179352636	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	179352637	.	G	.	.	LowGQX	END=179352648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179352649	.	G	.	.	LowGQX	.	GT	./.
chr1	179352650	.	G	.	.	LowGQX	END=179352662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179352663	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	179352664	.	T	.	.	LowGQX	END=179352681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179354371	.	A	.	.	LowGQX	END=179354550	GT	./.
chr1	179363036	.	A	.	.	LowGQX	END=179363180	GT	./.
chr1	179364231	.	A	.	.	LowGQX	END=179364339	GT	./.
chr1	179380279	.	A	.	.	LowGQX	END=179380448	GT	./.
chr1	179398651	.	A	.	.	LowGQX	END=179398756	GT	./.
chr1	179399585	.	A	.	.	LowGQX	END=179399743	GT	./.
chr1	179401330	.	T	.	.	LowGQX	END=179401489	GT	./.
chr1	179414103	.	A	.	.	LowGQX	END=179414217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179414218	.	A	.	.	LowGQX	.	GT	./.
chr1	179414219	.	T	.	.	LowGQX	END=179414220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179414221	.	T	.	.	LowGQX	.	GT	./.
chr1	179414222	.	A	.	.	LowGQX	END=179414228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179414229	.	A	.	.	LowGQX	.	GT	./.
chr1	179414230	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179414231	.	A	.	.	LowGQX	.	GT	./.
chr1	179414232	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179414233	.	A	.	.	LowGQX	.	GT	./.
chr1	179414234	.	A	.	.	LowGQX	END=179414241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179414242	.	G	.	.	LowGQX	END=179414292	GT	./.
chr1	179414293	.	A	.	.	LowGQX	END=179414299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179414300	.	C	.	.	LowGQX	.	GT	./.
chr1	179414301	.	T	.	.	LowGQX	END=179414302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179414303	.	T	.	.	LowGQX	.	GT	./.
chr1	179414304	.	A	.	.	LowGQX	END=179414310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179414311	.	A	.	.	LowGQX	END=179414312	GT	./.
chr1	179414313	.	A	.	.	LowGQX	END=179414318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179414319	.	T	.	.	LowGQX	.	GT	./.
chr1	179414320	.	A	.	.	LowGQX	END=179414337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179414338	.	T	.	.	LowGQX	.	GT	./.
chr1	179414339	.	G	.	.	LowGQX	END=179414341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179418205	.	G	.	.	LowGQX	END=179418206	GT	./.
chr1	179418207	.	G	.	.	LowGQX	END=179418240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179418241	.	A	.	.	LowGQX	.	GT	./.
chr1	179418242	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179418243	.	A	.	.	LowGQX	.	GT	./.
chr1	179418244	.	C	.	.	LowGQX	END=179418272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179418273	.	A	.	.	LowGQX	.	GT	./.
chr1	179418274	.	G	.	.	LowGQX	END=179418281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179418282	.	A	.	.	LowGQX	.	GT	./.
chr1	179418283	.	A	.	.	LowGQX	END=179418307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179418308	.	A	.	.	LowGQX	.	GT	./.
chr1	179418309	.	C	.	.	LowGQX	END=179418326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179418327	.	T	.	.	LowGQX	.	GT	./.
chr1	179418328	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179418329	.	A	.	.	LowGQX	.	GT	./.
chr1	179418330	.	T	.	.	LowGQX	END=179418345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179418346	.	G	.	.	LowGQX	.	GT	./.
chr1	179418347	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179418348	.	G	.	.	LowGQX	.	GT	./.
chr1	179437576	.	A	.	.	LowGQX	END=179437778	GT	./.
chr1	179452260	.	C	.	.	LowGQX	END=179452359	GT	./.
chr1	179460671	.	A	.	.	LowGQX	END=179460744	GT	./.
chr1	179460745	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179460746	.	A	.	.	LowGQX	.	GT	./.
chr1	179460747	.	C	.	.	LowGQX	END=179460786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179460787	.	A	.	.	LowGQX	.	GT	./.
chr1	179460788	.	A	.	.	LowGQX	END=179460848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179460849	.	C	.	.	LowGQX	.	GT	./.
chr1	179460850	.	C	.	.	LowGQX	END=179460874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179461988	.	A	.	.	LowGQX	END=179462088	GT	./.
chr1	179478429	.	A	.	.	LowGQX	END=179478540	GT	./.
chr1	179494467	.	A	.	.	LowGQX	END=179494584	GT	./.
chr1	179497460	.	A	.	.	LowGQX	END=179497568	GT	./.
chr1	179502922	.	T	.	.	LowGQX	END=179503021	GT	./.
chr1	179503863	.	A	.	.	LowGQX	END=179504099	GT	./.
chr1	179504129	.	G	.	.	LowGQX	END=179504206	GT	./.
chr1	179504207	.	A	.	.	LowGQX	END=179504228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179520257	.	G	.	.	PASS	END=179520275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	179520276	.	C	.	.	PASS	END=179520289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr1	179520290	.	C	.	.	PASS	END=179520299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	179520300	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:76:60
chr1	179520301	.	A	.	.	PASS	END=179520307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	179520308	.	C	.	.	PASS	END=179520357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	179520358	.	T	.	.	PASS	END=179520456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	179520457	.	G	.	.	PASS	END=179520470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	179520471	.	A	.	.	PASS	END=179520505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	179520506	.	G	A	1182.77	PASS	DP=42;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=28.16;SB=-571.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,42:42:90.29:1216,90,0:60:90:1.000
chr1	179520507	.	G	.	.	PASS	END=179520516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	179520517	.	T	.	.	PASS	END=179520531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	179520532	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:39:60
chr1	179520533	.	A	.	.	PASS	END=179520550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	179520551	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:24:60
chr1	179520552	.	T	.	.	PASS	END=179520560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	179520561	.	G	.	.	PASS	END=179520567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	179520568	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:45:60
chr1	179520569	.	C	.	.	PASS	END=179520637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr1	179521687	.	A	.	.	PASS	END=179521697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	179521698	.	T	.	.	PASS	END=179521730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	179521731	.	T	.	.	PASS	END=179521845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	179521846	.	T	.	.	PASS	END=179521863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	179521864	.	G	.	.	PASS	END=179521867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	179523560	.	C	.	.	PASS	END=179523583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	179523584	.	G	.	.	PASS	END=179523611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	179523612	.	T	.	.	PASS	END=179523638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	179523639	.	A	.	.	PASS	END=179523717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	179526111	.	G	.	.	PASS	END=179526132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	179526133	.	C	.	.	PASS	END=179526137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	179526138	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:39:60
chr1	179526139	.	G	.	.	PASS	END=179526147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	179526148	.	G	.	.	PASS	END=179526170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	179526171	.	T	.	.	PASS	END=179526230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:87:60
chr1	179526231	.	C	.	.	PASS	END=179526261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	179526262	.	G	.	.	PASS	END=179526331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	179526332	.	C	.	.	PASS	END=179526368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	179526369	.	G	.	.	PASS	END=179526370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	179526371	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:58:60
chr1	179526372	.	A	.	.	PASS	END=179526400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr1	179526401	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:75:60
chr1	179526402	.	T	.	.	PASS	END=179526416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	179528763	.	G	.	.	PASS	END=179528853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:82:60
chr1	179528854	.	A	.	.	PASS	END=179528879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr1	179528880	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:60:60
chr1	179528881	.	A	.	.	PASS	END=179528912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	179528913	.	G	.	.	PASS	END=179528914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	179528915	.	A	.	.	PASS	END=179528916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	179528917	.	G	A	1080.03	PASS	BaseQRankSum=2.017;DP=40;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=0.590;QD=27.00;ReadPosRankSum=0.093;SB=-235.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,38:40:84.27:1113,84,0:60:84:0.950
chr1	179528918	.	T	.	.	PASS	END=179528935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	179528936	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:54:60
chr1	179528937	.	A	.	.	PASS	END=179528941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	179528942	.	G	A	1070.17	PASS	BaseQRankSum=-0.746;DP=35;Dels=0.00;FS=7.667;HRun=2;HaplotypeScore=3.8908;MQ=60;MQ0=0;MQRankSum=-0.604;QD=30.58;ReadPosRankSum=0.604;SB=-69.61	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,33:35:48.52:1103,49,0:60:49:0.943
chr1	179528943	.	G	.	.	PASS	END=179528947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	179530373	.	A	.	.	PASS	END=179530378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	179530379	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:42:60
chr1	179530380	.	A	.	.	PASS	END=179530386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	179530387	.	G	.	.	PASS	END=179530487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	179530488	.	T	.	.	PASS	END=179530493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	179530494	.	A	.	.	PASS	END=179530513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	179530514	.	C	.	.	PASS	END=179530525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	179530526	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:18:60
chr1	179530527	.	T	.	.	PASS	END=179530534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	179530535	.	A	.	.	PASS	END=179530545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	179530546	.	T	.	.	PASS	END=179530547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	179533774	.	G	.	.	PASS	END=179533783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	179533784	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:57:60
chr1	179533785	.	G	.	.	PASS	END=179533842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	179533843	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr1	179533844	.	G	.	.	PASS	END=179533907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	179533908	.	C	.	.	PASS	END=179533915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	179533916	.	G	.	.	PASS	END=179533927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	179533928	.	C	.	.	PASS	END=179533930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	179533931	.	T	.	.	PASS	END=179533977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	179533978	.	T	.	.	PASS	END=179533979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	179544675	.	C	.	.	PASS	END=179544685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:80:60
chr1	179544686	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:60:60
chr1	179544687	.	C	.	.	PASS	END=179544727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:87:60
chr1	179544728	.	T	.	.	PASS	END=179544801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	179544802	.	G	.	.	PASS	END=179544895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	179544896	.	C	.	.	PASS	END=179544897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	179544898	.	T	C	2363.63	PASS	DP=77;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=5.8392;MQ=60;MQ0=0;QD=30.70;SB=-971.13	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,77:77:99:2397,184,0:60:99:1.000
chr1	179544899	.	C	.	.	PASS	END=179544952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	179544953	.	C	.	.	PASS	END=179544987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	179544988	.	C	.	.	PASS	END=179545006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	179545007	.	G	.	.	PASS	END=179545047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	179545048	.	C	.	.	PASS	END=179545049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:78:60
chr1	179545050	.	C	A	940.31	SB	DP=25;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=37.61;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,25:25:75.24:973,75,0:60:75:1.000
chr1	179561749	.	C	.	.	LowGQX	END=179561922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179561923	.	T	.	.	LowGQX	END=179561984	GT	./.
chr1	179562593	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:60
chr1	179562594	.	G	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	179562595	.	C	.	.	LowGQX	END=179562612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	179562613	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	179562614	.	C	.	.	LowGQX	END=179562687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	179562688	.	C	.	.	LowGQX	END=179562772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179562773	.	T	.	.	LowGQX	END=179563004	GT	./.
chr1	179564761	.	A	.	.	LowGQX	END=179564955	GT	./.
chr1	179587726	.	T	.	.	LowGQX	END=179587825	GT	./.
chr1	179590098	.	T	.	.	LowGQX	END=179590248	GT	./.
chr1	179599900	.	A	.	.	LowGQX	END=179599971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179599972	.	T	.	.	LowGQX	.	GT	./.
chr1	179599973	.	T	.	.	LowGQX	END=179600000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179600001	.	A	.	.	LowGQX	.	GT	./.
chr1	179600002	.	A	.	.	LowGQX	END=179600014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179600015	.	C	.	.	LowGQX	END=179600057	GT	./.
chr1	179603590	.	A	.	.	LowGQX	END=179603766	GT	./.
chr1	179604800	.	A	.	.	LowGQX	END=179605024	GT	./.
chr1	179608972	.	A	.	.	LowGQX	END=179609188	GT	./.
chr1	179609498	.	T	.	.	LowGQX	END=179609563	GT	./.
chr1	179609564	.	G	.	.	LowGQX	END=179609580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179609581	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	179609582	.	T	.	.	LowGQX	END=179609592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179609593	.	G	.	.	LowGQX	.	GT	./.
chr1	179609594	.	T	.	.	LowGQX	END=179609597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179620000	.	A	.	.	LowGQX	END=179620204	GT	./.
chr1	179621142	.	T	.	.	LowGQX	END=179621150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179621151	.	C	.	.	LowGQX	.	GT	./.
chr1	179621152	.	C	.	.	LowGQX	END=179621174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179621175	.	G	.	.	LowGQX	.	GT	./.
chr1	179621176	.	T	.	.	LowGQX	END=179621182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179621183	.	G	.	.	LowGQX	.	GT	./.
chr1	179621184	.	A	.	.	LowGQX	END=179621192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179621193	.	C	.	.	LowGQX	.	GT	./.
chr1	179621194	.	T	.	.	LowGQX	END=179621219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179621220	.	G	.	.	LowGQX	.	GT	./.
chr1	179621221	.	A	.	.	LowGQX	END=179621236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179621237	.	G	.	.	LowGQX	.	GT	./.
chr1	179621238	.	T	.	.	LowGQX	END=179621244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179621245	.	A	.	.	LowGQX	END=179621334	GT	./.
chr1	179623335	.	G	.	.	LowGQX	END=179623497	GT	./.
chr1	179631237	.	A	.	.	LowGQX	END=179631436	GT	./.
chr1	179632481	.	A	.	.	LowGQX	END=179632493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179632494	.	T	.	.	LowGQX	.	GT	./.
chr1	179632495	.	T	.	.	LowGQX	END=179632540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179632541	.	T	.	.	LowGQX	END=179632628	GT	./.
chr1	179638327	.	A	.	.	LowGQX	END=179638541	GT	./.
chr1	179659829	.	A	.	.	LowGQX	END=179660080	GT	./.
chr1	179782230	.	C	.	.	LowGQX	END=179782329	GT	./.
chr1	179782912	.	A	.	.	LowGQX	END=179782952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179782953	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:2:3.01:60:3
chr1	179782954	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:2:3.01:60:3
chr1	179782955	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:2:3.01:60:3
chr1	179782956	.	G	.	.	LowGQX	END=179782968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	179782969	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	179782970	.	G	.	.	LowGQX	END=179782971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	179782972	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	179782973	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	179782974	.	G	.	.	LowGQX	END=179782978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	179782979	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	179782980	.	C	.	.	LowGQX	END=179783022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179783023	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	179783024	.	A	.	.	LowGQX	END=179783028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179783029	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	179783030	.	G	.	.	LowGQX	END=179783050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179783051	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	179783052	.	C	.	.	LowGQX	END=179783057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179783058	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	179783059	.	C	.	.	LowGQX	END=179783088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179783089	.	T	.	.	LowGQX	END=179783195	GT	./.
chr1	179783196	.	C	.	.	LowGQX	END=179783205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179783206	.	A	.	.	LowGQX	.	GT	./.
chr1	179783207	.	C	.	.	LowGQX	END=179783208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179783209	.	A	.	.	LowGQX	.	GT	./.
chr1	179783210	.	A	.	.	LowGQX	END=179783216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179783217	.	G	.	.	LowGQX	.	GT	./.
chr1	179783218	.	G	.	.	LowGQX	END=179783225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179783226	.	T	.	.	LowGQX	.	GT	./.
chr1	179783227	.	C	.	.	LowGQX	END=179783233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179783234	.	A	.	.	LowGQX	.	GT	./.
chr1	179783235	.	T	.	.	LowGQX	END=179783251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179783252	.	T	.	.	LowGQX	END=179783253	GT	./.
chr1	179783254	.	A	.	.	LowGQX	END=179783262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179783263	.	C	.	.	LowGQX	.	GT	./.
chr1	179783264	.	C	.	.	LowGQX	END=179783326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179815204	.	C	.	.	LowGQX	END=179815965	GT	./.
chr1	179816618	.	G	.	.	LowGQX	END=179816773	GT	./.
chr1	179819978	.	A	.	.	LowGQX	END=179820044	GT	./.
chr1	179820045	.	C	.	.	LowGQX	END=179820091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820092	.	A	.	.	LowGQX	.	GT	./.
chr1	179820093	.	G	.	.	LowGQX	END=179820100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820101	.	A	.	.	LowGQX	.	GT	./.
chr1	179820102	.	C	.	.	LowGQX	END=179820148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820149	.	T	.	.	LowGQX	.	GT	./.
chr1	179820150	.	G	.	.	LowGQX	END=179820153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820154	.	T	.	.	LowGQX	.	GT	./.
chr1	179820155	.	T	.	.	LowGQX	END=179820166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820167	.	A	.	.	LowGQX	.	GT	./.
chr1	179820168	.	C	.	.	LowGQX	END=179820180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820181	.	T	.	.	LowGQX	.	GT	./.
chr1	179820182	.	G	.	.	LowGQX	END=179820184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820185	.	A	.	.	LowGQX	.	GT	./.
chr1	179820186	.	T	.	.	LowGQX	END=179820195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820196	.	A	.	.	LowGQX	END=179820246	GT	./.
chr1	179820247	.	C	.	.	LowGQX	END=179820256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820257	.	C	.	.	LowGQX	END=179820258	GT	./.
chr1	179820259	.	G	.	.	LowGQX	END=179820264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820265	.	T	.	.	LowGQX	.	GT	./.
chr1	179820266	.	C	.	.	LowGQX	END=179820267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820268	.	C	.	.	LowGQX	.	GT	./.
chr1	179820269	.	A	.	.	LowGQX	END=179820272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820273	.	T	.	.	LowGQX	.	GT	./.
chr1	179820274	.	C	.	.	LowGQX	END=179820276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820277	.	T	.	.	LowGQX	.	GT	./.
chr1	179820278	.	T	.	.	LowGQX	END=179820282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820283	.	C	.	.	LowGQX	END=179820285	GT	./.
chr1	179820286	.	T	.	.	LowGQX	END=179820293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820294	.	T	.	.	LowGQX	.	GT	./.
chr1	179820295	.	T	.	.	LowGQX	END=179820298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820299	.	C	.	.	LowGQX	.	GT	./.
chr1	179820300	.	A	.	.	LowGQX	END=179820308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820309	.	T	.	.	LowGQX	.	GT	./.
chr1	179820310	.	C	.	.	LowGQX	END=179820327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820328	.	T	.	.	LowGQX	.	GT	./.
chr1	179820329	.	A	.	.	LowGQX	END=179820332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820333	.	C	.	.	LowGQX	.	GT	./.
chr1	179820334	.	C	.	.	LowGQX	END=179820338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820339	.	T	.	.	LowGQX	.	GT	./.
chr1	179820340	.	C	.	.	LowGQX	END=179820360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820361	.	T	.	.	LowGQX	.	GT	./.
chr1	179820362	.	C	.	.	LowGQX	END=179820372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820373	.	G	.	.	LowGQX	.	GT	./.
chr1	179820374	.	G	.	.	LowGQX	END=179820397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179820398	.	A	.	.	LowGQX	END=179820500	GT	./.
chr1	179821734	.	C	.	.	LowGQX	END=179821833	GT	./.
chr1	179833915	.	G	.	.	LowGQX	END=179834071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179834072	.	C	.	.	LowGQX	END=179834311	GT	./.
chr1	179851636	.	C	.	.	LowGQX	END=179852201	GT	./.
chr1	179852743	.	C	.	.	LowGQX	END=179852842	GT	./.
chr1	179853816	.	C	.	.	LowGQX	END=179853915	GT	./.
chr1	179858426	.	T	.	.	LowGQX	END=179858525	GT	./.
chr1	179869232	.	A	.	.	LowGQX	END=179869331	GT	./.
chr1	179870415	.	T	.	.	LowGQX	END=179870525	GT	./.
chr1	179873080	.	G	.	.	LowGQX	END=179873119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179873120	.	T	.	.	LowGQX	END=179873178	GT	./.
chr1	179873179	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179876930	.	A	.	.	LowGQX	END=179877029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179877725	.	A	.	.	LowGQX	END=179877824	GT	./.
chr1	179882693	.	T	.	.	LowGQX	END=179882792	GT	./.
chr1	179883112	.	T	.	.	LowGQX	END=179883211	GT	./.
chr1	179886585	.	A	.	.	LowGQX	END=179887376	GT	./.
chr1	179924149	.	C	.	.	LowGQX	END=179924308	GT	./.
chr1	179955303	.	G	.	.	LowGQX	END=179955323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179955324	.	G	.	.	LowGQX	END=179955402	GT	./.
chr1	179956294	.	G	.	.	LowGQX	END=179956378	GT	./.
chr1	179956379	.	T	.	.	LowGQX	END=179956400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179956401	.	C	.	.	LowGQX	.	GT	./.
chr1	179956402	.	T	.	.	LowGQX	END=179956423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179956424	.	A	.	.	LowGQX	.	GT	./.
chr1	179956425	.	A	.	.	LowGQX	END=179956447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179959641	.	G	.	.	LowGQX	END=179959756	GT	./.
chr1	179961166	.	A	.	.	LowGQX	END=179961236	GT	./.
chr1	179961237	.	C	.	.	LowGQX	END=179961247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179961248	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	179961249	.	T	.	.	LowGQX	END=179961313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179961314	.	A	.	.	LowGQX	.	GT	./.
chr1	179961315	.	A	.	.	LowGQX	END=179961333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179961334	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	179961335	.	G	.	.	LowGQX	END=179961354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179961355	.	A	.	.	LowGQX	.	GT	./.
chr1	179961356	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179965687	.	G	.	.	LowGQX	END=179965739	GT	./.
chr1	179965740	.	C	.	.	LowGQX	END=179965757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179965758	.	G	.	.	LowGQX	.	GT	./.
chr1	179965759	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179965760	.	T	.	.	LowGQX	.	GT	./.
chr1	179965761	.	A	.	.	LowGQX	END=179965771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179965772	.	G	.	.	LowGQX	.	GT	./.
chr1	179965773	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179965774	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	179965775	.	T	.	.	LowGQX	END=179965776	GT	./.
chr1	179965777	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179965778	.	G	.	.	LowGQX	.	GT	./.
chr1	179965779	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179965780	.	G	.	.	LowGQX	END=179965784	GT	./.
chr1	179965785	.	A	.	.	LowGQX	END=179965953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179965954	.	C	.	.	LowGQX	.	GT	./.
chr1	179965955	.	T	.	.	LowGQX	END=179965976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179965977	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	179965978	.	C	.	.	LowGQX	END=179966028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179966029	.	A	.	.	LowGQX	.	GT	./.
chr1	179966030	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179966031	.	A	.	.	LowGQX	.	GT	./.
chr1	179966032	.	C	.	.	LowGQX	END=179966042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179966043	.	G	.	.	LowGQX	.	GT	./.
chr1	179966044	.	C	.	.	LowGQX	END=179966047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179966048	.	A	.	.	LowGQX	.	GT	./.
chr1	179966049	.	C	.	.	LowGQX	END=179966055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179966056	.	C	.	.	LowGQX	.	GT	./.
chr1	179966057	.	T	.	.	LowGQX	END=179966058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179966059	.	A	.	.	LowGQX	.	GT	./.
chr1	179966060	.	C	.	.	LowGQX	END=179966063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179966064	.	T	.	.	LowGQX	.	GT	./.
chr1	179966065	.	C	.	.	LowGQX	END=179966071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179966072	.	C	.	.	LowGQX	END=179966073	GT	./.
chr1	179966074	.	C	.	.	LowGQX	END=179966081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179966082	.	A	.	.	LowGQX	END=179966214	GT	./.
chr1	179966215	.	A	.	.	LowGQX	END=179966221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179966222	.	C	.	.	LowGQX	.	GT	./.
chr1	179966223	.	C	.	.	LowGQX	END=179966225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179966226	.	C	.	.	LowGQX	.	GT	./.
chr1	179966227	.	C	.	.	LowGQX	END=179966228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179966229	.	G	.	.	LowGQX	.	GT	./.
chr1	179966230	.	T	.	.	LowGQX	END=179966235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179966236	.	T	.	.	LowGQX	.	GT	./.
chr1	179966237	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179966238	.	G	.	.	LowGQX	.	GT	./.
chr1	179966239	.	T	.	.	LowGQX	END=179966243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179966244	.	G	.	.	LowGQX	.	GT	./.
chr1	179966245	.	T	.	.	LowGQX	END=179966255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179966256	.	G	.	.	LowGQX	END=179966257	GT	./.
chr1	179966258	.	A	.	.	LowGQX	END=179966265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179966266	.	A	.	.	LowGQX	.	GT	./.
chr1	179966267	.	A	.	.	LowGQX	END=179966309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179966310	.	G	.	.	LowGQX	.	GT	./.
chr1	179972308	.	G	.	.	LowGQX	END=179972422	GT	./.
chr1	179975588	.	G	.	.	LowGQX	END=179975702	GT	./.
chr1	179981063	.	G	.	.	LowGQX	END=179981242	GT	./.
chr1	179982981	.	G	.	.	LowGQX	END=179983381	GT	./.
chr1	179983382	.	G	.	.	LowGQX	END=179983433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983434	.	A	.	.	LowGQX	.	GT	./.
chr1	179983435	.	A	.	.	LowGQX	END=179983438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983439	.	T	.	.	LowGQX	.	GT	./.
chr1	179983440	.	C	.	.	LowGQX	END=179983447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983448	.	G	.	.	LowGQX	.	GT	./.
chr1	179983449	.	G	.	.	LowGQX	END=179983466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983467	.	A	.	.	LowGQX	.	GT	./.
chr1	179983468	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983469	.	A	.	.	LowGQX	.	GT	./.
chr1	179983470	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983471	.	G	.	.	LowGQX	.	GT	./.
chr1	179983472	.	A	.	.	LowGQX	END=179983475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983476	.	C	.	.	LowGQX	.	GT	./.
chr1	179983477	.	A	.	.	LowGQX	END=179983485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983486	.	A	.	.	LowGQX	.	GT	./.
chr1	179983487	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983488	.	C	.	.	LowGQX	END=179983489	GT	./.
chr1	179983490	.	G	.	.	LowGQX	END=179983492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983493	.	G	.	.	LowGQX	.	GT	./.
chr1	179983494	.	C	.	.	LowGQX	END=179983500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983501	.	A	.	.	LowGQX	.	GT	./.
chr1	179983502	.	A	.	.	LowGQX	END=179983505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983506	.	T	.	.	LowGQX	.	GT	./.
chr1	179983507	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983508	.	T	.	.	LowGQX	.	GT	./.
chr1	179983509	.	A	.	.	LowGQX	END=179983512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983513	.	A	.	.	LowGQX	.	GT	./.
chr1	179983514	.	A	.	.	LowGQX	END=179983525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983526	.	C	.	.	LowGQX	END=179983527	GT	./.
chr1	179983528	.	C	.	.	LowGQX	END=179983529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983530	.	C	.	.	LowGQX	END=179983554	GT	./.
chr1	179983555	.	G	.	.	LowGQX	END=179983561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983562	.	G	.	.	LowGQX	.	GT	./.
chr1	179983563	.	G	.	.	LowGQX	END=179983564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983565	.	A	.	.	LowGQX	.	GT	./.
chr1	179983566	.	A	.	.	LowGQX	END=179983568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983569	.	T	.	.	LowGQX	.	GT	./.
chr1	179983570	.	A	.	.	LowGQX	END=179983579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983580	.	G	.	.	LowGQX	.	GT	./.
chr1	179983581	.	C	.	.	LowGQX	END=179983590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983591	.	A	.	.	LowGQX	.	GT	./.
chr1	179983592	.	G	.	.	LowGQX	END=179983600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983601	.	T	.	.	LowGQX	.	GT	./.
chr1	179983602	.	G	.	.	LowGQX	END=179983614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983615	.	A	.	.	LowGQX	.	GT	./.
chr1	179983616	.	T	.	.	LowGQX	END=179983620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983621	.	A	.	.	LowGQX	.	GT	./.
chr1	179983622	.	T	.	.	LowGQX	END=179983635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179983636	.	C	.	.	LowGQX	.	GT	./.
chr1	179983637	.	A	.	.	LowGQX	END=179983640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179984983	.	G	.	.	LowGQX	END=179985105	GT	./.
chr1	179989083	.	G	.	.	LowGQX	END=179989758	GT	./.
chr1	179989759	.	G	.	.	LowGQX	END=179989764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989765	.	T	.	.	LowGQX	.	GT	./.
chr1	179989766	.	A	.	.	LowGQX	END=179989767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989768	.	A	.	.	LowGQX	END=179989769	GT	./.
chr1	179989770	.	G	.	.	LowGQX	END=179989783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989784	.	T	.	.	LowGQX	END=179989785	GT	./.
chr1	179989786	.	T	.	.	LowGQX	END=179989789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989790	.	T	.	.	LowGQX	.	GT	./.
chr1	179989791	.	C	.	.	LowGQX	END=179989792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989793	.	G	.	.	LowGQX	.	GT	./.
chr1	179989794	.	A	.	.	LowGQX	END=179989800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989801	.	A	.	.	LowGQX	.	GT	./.
chr1	179989802	.	G	.	.	LowGQX	END=179989806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989807	.	T	.	.	LowGQX	.	GT	./.
chr1	179989808	.	T	.	.	LowGQX	END=179989819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989820	.	G	.	.	LowGQX	.	GT	./.
chr1	179989821	.	C	.	.	LowGQX	END=179989828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989829	.	T	.	.	LowGQX	.	GT	./.
chr1	179989830	.	C	.	.	LowGQX	END=179989841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989842	.	G	.	.	LowGQX	.	GT	./.
chr1	179989843	.	C	.	.	LowGQX	END=179989844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989845	.	T	.	.	LowGQX	.	GT	./.
chr1	179989846	.	A	.	.	LowGQX	END=179989857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989858	.	T	.	.	LowGQX	.	GT	./.
chr1	179989859	.	G	.	.	LowGQX	END=179989861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989862	.	G	.	.	LowGQX	END=179989863	GT	./.
chr1	179989864	.	G	.	.	LowGQX	END=179989868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989869	.	T	.	.	LowGQX	.	GT	./.
chr1	179989870	.	T	.	.	LowGQX	END=179989871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989872	.	T	.	.	LowGQX	END=179989873	GT	./.
chr1	179989874	.	A	.	.	LowGQX	END=179989876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989877	.	G	.	.	LowGQX	END=179989878	GT	./.
chr1	179989879	.	G	.	.	LowGQX	END=179989881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989882	.	G	.	.	LowGQX	.	GT	./.
chr1	179989883	.	A	.	.	LowGQX	END=179989884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989885	.	T	.	.	LowGQX	END=179989886	GT	./.
chr1	179989887	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989888	.	C	.	.	LowGQX	END=179989889	GT	./.
chr1	179989890	.	C	.	.	LowGQX	END=179989895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989896	.	A	.	.	LowGQX	END=179989898	GT	./.
chr1	179989899	.	A	.	.	LowGQX	END=179989903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989904	.	G	.	.	LowGQX	END=179989905	GT	./.
chr1	179989906	.	C	.	.	LowGQX	END=179989909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989910	.	G	.	.	LowGQX	END=179989913	GT	./.
chr1	179989914	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989915	.	A	.	.	LowGQX	.	GT	./.
chr1	179989916	.	C	.	.	LowGQX	END=179989918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989919	.	C	.	.	LowGQX	.	GT	./.
chr1	179989920	.	C	.	.	LowGQX	END=179989921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989922	.	C	.	.	LowGQX	END=179989923	GT	./.
chr1	179989924	.	T	.	.	LowGQX	END=179989927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989928	.	A	.	.	LowGQX	.	GT	./.
chr1	179989929	.	A	.	.	LowGQX	END=179989930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989931	.	G	.	.	LowGQX	.	GT	./.
chr1	179989932	.	T	.	.	LowGQX	END=179989933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989934	.	G	.	.	LowGQX	.	GT	./.
chr1	179989935	.	C	.	.	LowGQX	END=179989957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989958	.	T	.	.	LowGQX	.	GT	./.
chr1	179989959	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989960	.	T	.	.	LowGQX	.	GT	./.
chr1	179989961	.	T	.	.	LowGQX	END=179989963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989964	.	C	.	.	LowGQX	.	GT	./.
chr1	179989965	.	C	.	.	LowGQX	END=179989971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989972	.	A	.	.	LowGQX	.	GT	./.
chr1	179989973	.	A	.	.	LowGQX	END=179989974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989975	.	A	.	.	LowGQX	.	GT	./.
chr1	179989976	.	A	.	.	LowGQX	END=179989978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989979	.	A	.	.	LowGQX	.	GT	./.
chr1	179989980	.	G	.	.	LowGQX	END=179989994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989995	.	A	.	.	LowGQX	.	GT	./.
chr1	179989996	.	A	.	.	LowGQX	END=179989997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179989998	.	A	.	.	LowGQX	.	GT	./.
chr1	179989999	.	G	.	.	LowGQX	END=179990009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179990010	.	A	.	.	LowGQX	END=179990012	GT	./.
chr1	179990013	.	C	.	.	LowGQX	END=179990015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179990016	.	A	.	.	LowGQX	.	GT	./.
chr1	179990017	.	A	.	.	LowGQX	END=179990020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179990021	.	T	.	.	LowGQX	.	GT	./.
chr1	179990022	.	T	.	.	LowGQX	END=179990026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179990027	.	C	.	.	LowGQX	.	GT	./.
chr1	179990028	.	C	.	.	LowGQX	END=179990034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179990035	.	T	.	.	LowGQX	END=179990036	GT	./.
chr1	179990037	.	G	.	.	LowGQX	END=179990044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179990045	.	G	.	.	LowGQX	.	GT	./.
chr1	179990046	.	G	.	.	LowGQX	END=179990047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179990048	.	G	.	.	LowGQX	.	GT	./.
chr1	179990049	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179990050	.	T	.	.	LowGQX	.	GT	./.
chr1	179990051	.	A	.	.	LowGQX	END=179990056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179990057	.	A	.	.	LowGQX	END=179990144	GT	./.
chr1	179991832	.	G	.	.	LowGQX	END=179991886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	179991887	.	C	.	.	LowGQX	.	GT	./.
chr1	179991888	.	C	.	.	LowGQX	END=179991902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	179991903	.	T	.	.	LowGQX	END=179991983	GT	./.
chr1	179993553	.	G	.	.	LowGQX	END=179993717	GT	./.
chr1	180000434	.	T	.	.	LowGQX	END=180000629	GT	./.
chr1	180002996	.	G	.	.	LowGQX	END=180003071	GT	./.
chr1	180003072	.	G	.	.	LowGQX	END=180003188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	180003189	.	A	.	.	LowGQX	END=180003217	GT	./.
chr1	180006060	.	G	.	.	LowGQX	END=180006239	GT	./.
chr1	180010222	.	T	.	.	LowGQX	END=180010383	GT	./.
chr1	180010796	.	G	.	.	LowGQX	END=180010937	GT	./.
chr1	180012190	.	G	.	.	LowGQX	END=180012327	GT	./.
chr1	180013185	.	G	.	.	LowGQX	END=180013308	GT	./.
chr1	180017670	.	G	.	.	LowGQX	END=180017859	GT	./.
chr1	180021296	.	A	.	.	LowGQX	END=180021329	GT	./.
chr1	180021330	.	C	.	.	LowGQX	END=180021333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180021334	.	T	.	.	LowGQX	.	GT	./.
chr1	180021335	.	T	.	.	LowGQX	END=180021336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180021337	.	T	.	.	LowGQX	.	GT	./.
chr1	180021338	.	T	.	.	LowGQX	END=180021344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180021345	.	T	.	.	LowGQX	.	GT	./.
chr1	180021346	.	T	.	.	LowGQX	END=180021366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180021367	.	T	.	.	LowGQX	.	GT	./.
chr1	180021368	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180021369	.	T	.	.	LowGQX	.	GT	./.
chr1	180021370	.	T	.	.	LowGQX	END=180021372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180021373	.	T	.	.	LowGQX	.	GT	./.
chr1	180021374	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180021375	.	T	.	.	LowGQX	.	GT	./.
chr1	180021376	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180021377	.	T	.	.	LowGQX	.	GT	./.
chr1	180021378	.	C	.	.	LowGQX	END=180021386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180021387	.	T	.	.	LowGQX	.	GT	./.
chr1	180021388	.	G	.	.	LowGQX	END=180021389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180021390	.	T	.	.	LowGQX	.	GT	./.
chr1	180021391	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180021392	.	T	.	.	LowGQX	.	GT	./.
chr1	180021393	.	C	.	.	LowGQX	END=180021400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180021401	.	T	.	.	LowGQX	.	GT	./.
chr1	180021402	.	G	.	.	LowGQX	END=180021407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180021408	.	A	.	.	LowGQX	.	GT	./.
chr1	180021409	.	A	.	.	LowGQX	END=180021416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180021417	.	T	.	.	LowGQX	.	GT	./.
chr1	180021418	.	C	.	.	LowGQX	END=180021441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180021442	.	G	.	.	LowGQX	.	GT	./.
chr1	180021443	.	G	.	.	LowGQX	END=180021452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180021453	.	T	.	.	LowGQX	.	GT	./.
chr1	180021454	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180021455	.	T	.	.	LowGQX	.	GT	./.
chr1	180022104	.	G	.	.	LowGQX	END=180022301	GT	./.
chr1	180022884	.	G	.	.	LowGQX	END=180023069	GT	./.
chr1	180023544	.	T	.	.	LowGQX	END=180023643	GT	./.
chr1	180031354	.	G	.	.	LowGQX	END=180031501	GT	./.
chr1	180034249	.	G	.	.	LowGQX	END=180034331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	180034332	.	C	.	.	LowGQX	END=180034407	GT	./.
chr1	180042949	.	T	.	.	LowGQX	END=180043048	GT	./.
chr1	180044156	.	G	.	.	LowGQX	END=180044356	GT	./.
chr1	180047597	.	G	.	.	LowGQX	END=180047809	GT	./.
chr1	180049651	.	G	.	.	LowGQX	END=180049830	GT	./.
chr1	180053152	.	G	.	.	LowGQX	END=180053337	GT	./.
chr1	180056672	.	A	.	.	LowGQX	END=180056852	GT	./.
chr1	180059840	.	A	.	.	LowGQX	END=180059939	GT	./.
chr1	180061748	.	G	.	.	LowGQX	END=180061829	GT	./.
chr1	180061830	.	G	.	.	LowGQX	END=180062008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180062009	.	G	.	.	LowGQX	.	GT	./.
chr1	180062010	.	A	.	.	LowGQX	END=180062017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180062018	.	G	.	.	LowGQX	.	GT	./.
chr1	180062019	.	A	.	.	LowGQX	END=180062095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180062096	.	A	.	.	LowGQX	END=180063391	GT	./.
chr1	180063392	.	C	.	.	LowGQX	END=180063612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180063613	.	T	.	.	LowGQX	END=180063735	GT	./.
chr1	180063736	.	T	.	.	LowGQX	END=180063751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180064657	.	G	.	.	LowGQX	END=180064799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180064800	.	A	.	.	LowGQX	END=180065063	GT	./.
chr1	180065064	.	A	.	.	LowGQX	END=180065065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180065172	.	G	.	.	LowGQX	END=180065178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180065179	.	T	.	.	LowGQX	.	GT	./.
chr1	180065180	.	T	.	.	LowGQX	END=180065207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180065208	.	A	.	.	LowGQX	.	GT	./.
chr1	180065209	.	A	.	.	LowGQX	END=180065214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180065215	.	G	.	.	LowGQX	END=180065295	GT	./.
chr1	180065296	.	C	.	.	LowGQX	END=180065319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180067997	.	G	.	.	LowGQX	END=180068120	GT	./.
chr1	180080131	.	G	.	.	LowGQX	END=180080161	GT	./.
chr1	180080162	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180080163	.	G	.	.	LowGQX	.	GT	./.
chr1	180080164	.	G	.	.	LowGQX	END=180080165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180080166	.	T	.	.	LowGQX	END=180080167	GT	./.
chr1	180080168	.	A	.	.	LowGQX	END=180080175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180080176	.	T	.	.	LowGQX	.	GT	./.
chr1	180080177	.	G	.	.	LowGQX	END=180080202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180080203	.	G	.	.	LowGQX	.	GT	./.
chr1	180080204	.	C	.	.	LowGQX	END=180080205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180080206	.	A	.	.	LowGQX	.	GT	./.
chr1	180080207	.	G	.	.	LowGQX	END=180080211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180080212	.	C	.	.	LowGQX	.	GT	./.
chr1	180080213	.	G	.	.	LowGQX	END=180080216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180080217	.	T	.	.	LowGQX	.	GT	./.
chr1	180080218	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180080219	.	T	.	.	LowGQX	.	GT	./.
chr1	180080220	.	T	.	.	LowGQX	END=180080223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180080224	.	G	.	.	LowGQX	.	GT	./.
chr1	180080225	.	A	.	.	LowGQX	END=180080236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180080237	.	G	.	.	LowGQX	.	GT	./.
chr1	180080238	.	A	.	.	LowGQX	END=180080245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180080246	.	G	.	.	LowGQX	.	GT	./.
chr1	180080247	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	180080248	.	T	.	.	LowGQX	END=180080266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	180080267	.	G	.	.	LowGQX	.	GT	./.
chr1	180080268	.	A	.	.	LowGQX	END=180080276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	180080277	.	G	.	.	LowGQX	END=180080278	GT	./.
chr1	180080279	.	A	.	.	LowGQX	END=180080280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	180080281	.	A	.	.	LowGQX	.	GT	./.
chr1	180080282	.	A	.	.	LowGQX	END=180080287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	180080288	.	C	.	.	LowGQX	.	GT	./.
chr1	180080289	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	180080290	.	T	.	.	LowGQX	.	GT	./.
chr1	180080291	.	G	.	.	LowGQX	END=180080296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	180124041	.	G	.	.	LowGQX	END=180124171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180124172	.	C	.	.	LowGQX	END=180124310	GT	./.
chr1	180135624	.	A	.	.	LowGQX	END=180135728	GT	./.
chr1	180144429	.	G	.	.	LowGQX	END=180144474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	180144475	.	A	.	.	LowGQX	END=180144528	GT	./.
chr1	180145064	.	A	.	.	LowGQX	END=180145068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180145069	.	C	.	.	LowGQX	.	GT	./.
chr1	180145070	.	T	.	.	LowGQX	END=180145075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180145076	.	T	.	.	LowGQX	.	GT	./.
chr1	180145077	.	G	.	.	LowGQX	END=180145081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180145082	.	G	.	.	LowGQX	.	GT	./.
chr1	180145083	.	C	.	.	LowGQX	END=180145087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180145088	.	A	G	3.07	LowGQX;LowQD;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=1.54;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:30,0,30:60:3:0.500
chr1	180145089	.	C	.	.	LowGQX	END=180145117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	180145118	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	180145119	.	T	.	.	LowGQX	END=180145147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180145148	.	T	.	.	LowGQX	.	GT	./.
chr1	180145149	.	C	.	.	LowGQX	END=180145154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180145155	.	C	.	.	LowGQX	END=180145157	GT	./.
chr1	180145158	.	G	.	.	LowGQX	END=180145160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180145161	.	C	.	.	LowGQX	.	GT	./.
chr1	180145162	.	C	.	.	LowGQX	END=180145165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180145166	.	C	.	.	LowGQX	.	GT	./.
chr1	180145167	.	A	.	.	LowGQX	END=180145169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180145170	.	T	.	.	LowGQX	.	GT	./.
chr1	180147925	.	G	.	.	LowGQX	END=180147934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180147935	.	G	.	.	LowGQX	.	GT	./.
chr1	180147936	.	G	.	.	LowGQX	END=180147995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180147996	.	G	.	.	LowGQX	.	GT	./.
chr1	180147997	.	G	.	.	LowGQX	END=180148018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180148019	.	G	.	.	LowGQX	END=180148024	GT	./.
chr1	180151307	.	A	.	.	LowGQX	END=180151456	GT	./.
chr1	180153049	.	A	.	.	LowGQX	END=180153187	GT	./.
chr1	180155135	.	C	.	.	LowGQX	END=180155222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	180155223	.	T	.	.	LowGQX	END=180155319	GT	./.
chr1	180158685	.	A	.	.	LowGQX	END=180158811	GT	./.
chr1	180159566	.	A	.	.	LowGQX	END=180159717	GT	./.
chr1	180163324	.	C	.	.	LowGQX	END=180163529	GT	./.
chr1	180165395	.	A	.	.	LowGQX	END=180165411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180165412	.	A	.	.	LowGQX	.	GT	./.
chr1	180165413	.	C	.	.	LowGQX	END=180165426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180165427	.	A	.	.	LowGQX	.	GT	./.
chr1	180165428	.	G	.	.	LowGQX	END=180165437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180165438	.	C	.	.	LowGQX	.	GT	./.
chr1	180165439	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180165440	.	A	.	.	LowGQX	.	GT	./.
chr1	180165441	.	C	.	.	LowGQX	END=180165448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180165449	.	A	.	.	LowGQX	.	GT	./.
chr1	180165450	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180165451	.	T	.	.	LowGQX	.	GT	./.
chr1	180165452	.	T	.	.	LowGQX	END=180165473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180165474	.	C	.	.	LowGQX	.	GT	./.
chr1	180165475	.	G	.	.	LowGQX	END=180165534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180165535	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	180165536	.	C	.	.	LowGQX	END=180165552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180165553	.	T	.	.	LowGQX	.	GT	./.
chr1	180165554	.	G	.	.	LowGQX	END=180165568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180165569	.	T	.	.	LowGQX	.	GT	./.
chr1	180165570	.	G	.	.	LowGQX	END=180165572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180165573	.	T	.	.	LowGQX	.	GT	./.
chr1	180165574	.	C	.	.	LowGQX	END=180165599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180165600	.	G	.	.	LowGQX	.	GT	./.
chr1	180165601	.	T	.	.	LowGQX	END=180165628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180165629	.	A	.	.	LowGQX	END=180166072	GT	./.
chr1	180166073	.	G	.	.	LowGQX	END=180166174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180166423	.	G	.	.	LowGQX	END=180166424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180166425	.	A	.	.	LowGQX	END=180166426	GT	./.
chr1	180166427	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180166428	.	T	.	.	LowGQX	.	GT	./.
chr1	180166429	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180166430	.	A	.	.	LowGQX	.	GT	./.
chr1	180166431	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180166432	.	T	.	.	LowGQX	.	GT	./.
chr1	180166433	.	C	.	.	LowGQX	END=180166435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180166436	.	T	.	.	LowGQX	.	GT	./.
chr1	180166437	.	G	.	.	LowGQX	END=180166440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180166441	.	T	.	.	LowGQX	.	GT	./.
chr1	180166442	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180166443	.	T	.	.	LowGQX	END=180166445	GT	./.
chr1	180166446	.	G	.	.	LowGQX	END=180166447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180166448	.	A	.	.	LowGQX	.	GT	./.
chr1	180166449	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180166450	.	C	.	.	LowGQX	END=180166451	GT	./.
chr1	180166452	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180166453	.	A	.	.	LowGQX	.	GT	./.
chr1	180166454	.	T	.	.	LowGQX	END=180166456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180166457	.	C	.	.	LowGQX	END=180166458	GT	./.
chr1	180166459	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180166460	.	T	.	.	LowGQX	.	GT	./.
chr1	180166461	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180166462	.	T	.	.	LowGQX	.	GT	./.
chr1	180166463	.	T	.	.	LowGQX	END=180166465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180166466	.	A	.	.	LowGQX	.	GT	./.
chr1	180166467	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180166468	.	C	.	.	LowGQX	END=180166470	GT	./.
chr1	180166471	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180166472	.	T	.	.	LowGQX	END=180166473	GT	./.
chr1	180166474	.	T	.	.	LowGQX	END=180166475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180166476	.	A	.	.	LowGQX	END=180166477	GT	./.
chr1	180166478	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180166479	.	T	.	.	LowGQX	END=180166492	GT	./.
chr1	180166493	.	C	.	.	LowGQX	END=180166522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	180167226	.	A	.	.	LowGQX	END=180167239	GT	./.
chr1	180167240	.	G	.	.	LowGQX	END=180167353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180167354	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	180167355	.	A	.	.	LowGQX	END=180167392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180167393	.	A	.	.	LowGQX	.	GT	./.
chr1	180167394	.	T	.	.	LowGQX	END=180167490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180167491	.	T	.	.	LowGQX	END=180167597	GT	./.
chr1	180199613	.	C	.	.	PASS	END=180199716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	180199717	.	A	.	.	PASS	END=180199758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr1	180199759	.	T	.	.	PASS	END=180199782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	180199783	.	A	.	.	PASS	END=180199791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	180217369	.	A	.	.	PASS	END=180217375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	180217376	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:48:60
chr1	180217377	.	T	.	.	PASS	END=180217401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	180217402	.	C	.	.	PASS	END=180217458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	180217459	.	A	.	.	PASS	END=180217513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	180217514	.	T	.	.	PASS	END=180217528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	180217529	.	G	.	.	PASS	END=180217540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	180217541	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:42:60
chr1	180217542	.	A	.	.	PASS	END=180217558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	180217559	.	T	.	.	PASS	END=180217563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr1	180217564	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:42:60
chr1	180217565	.	C	.	.	PASS	END=180217579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	180217580	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:36:60
chr1	180217581	.	G	.	.	PASS	END=180217603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	180217604	.	G	.	.	PASS	END=180217605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	180217606	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:36:60
chr1	180217607	.	C	.	.	PASS	END=180217609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	180217610	.	T	.	.	PASS	END=180217614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	180217615	.	T	.	.	PASS	END=180217616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	180217617	.	G	.	.	PASS	END=180217643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	180217644	.	A	.	.	PASS	END=180217647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	180235476	.	C	.	.	PASS	END=180235493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr1	180235494	.	G	.	.	PASS	END=180235561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:299:99:60
chr1	180235562	.	G	.	.	PASS	END=180235703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:339:99:60
chr1	180235704	.	A	.	.	PASS	END=180235750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:275:99:60
chr1	180235751	.	G	.	.	PASS	END=180235773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	180235774	.	T	.	.	PASS	END=180235780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	180240464	.	G	.	.	PASS	END=180240506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	180240507	.	C	.	.	PASS	END=180240592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	180240593	.	A	.	.	PASS	END=180240636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	180240637	.	T	.	.	PASS	END=180240647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	180240648	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:72:60
chr1	180240649	.	C	.	.	PASS	END=180240672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:90:60
chr1	180240673	.	A	.	.	PASS	END=180240700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	180240701	.	G	.	.	PASS	END=180240706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr1	180240707	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:57:60
chr1	180240708	.	G	.	.	PASS	END=180240720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	180240919	.	T	.	.	PASS	END=180240942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	180240943	.	A	.	.	PASS	END=180241046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	180241047	.	T	.	.	PASS	END=180241052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	180241053	.	C	.	.	PASS	END=180241086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	180241087	.	A	.	.	PASS	END=180241102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	180241103	.	A	.	.	PASS	END=180241105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	180241106	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:63:60
chr1	180241107	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:30:60
chr1	180241108	.	T	.	.	PASS	END=180241129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	180241130	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr1	180241131	.	G	.	.	PASS	END=180241137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	180241138	.	C	.	.	PASS	END=180241142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	180241143	.	T	.	.	PASS	END=180241157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	180241158	.	G	.	.	LowGQX	END=180241166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	180241167	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	180241168	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	180241169	.	A	.	.	LowGQX	END=180241179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	180241180	.	A	.	.	LowGQX	END=180241182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	180241183	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	180241184	.	C	.	.	LowGQX	END=180241192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	180243269	.	A	.	.	LowGQX	END=180243272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	180243273	.	T	.	.	PASS	END=180243274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	180243275	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	180243276	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	180243277	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	180243278	.	G	.	.	PASS	END=180243287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	180243288	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:0:60
chr1	180243289	.	T	.	.	PASS	END=180243290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:60
chr1	180243291	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	180243292	.	C	.	.	PASS	END=180243305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	180243306	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	180243307	.	C	.	.	PASS	END=180243311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	180243312	.	G	.	.	PASS	END=180243349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	180243350	.	C	.	.	PASS	END=180243365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	180243366	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:21:60
chr1	180243367	.	A	.	.	PASS	END=180243368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	180243369	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:21:60
chr1	180243370	.	G	.	.	PASS	END=180243393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	180243394	.	T	.	.	PASS	END=180243411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	180243412	.	T	.	.	PASS	END=180243427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	180243428	.	G	.	.	PASS	END=180243458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	180243459	.	C	.	.	PASS	END=180243496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	180243497	.	C	.	.	PASS	END=180243514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	180243515	.	C	.	.	PASS	END=180243523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	180243524	.	A	G	2709.52	PASS	BaseQRankSum=0.108;DP=103;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=0.514;QD=26.31;ReadPosRankSum=0.562;SB=-1699.79	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,101:103:99:2743,163,0:60:99:0.981
chr1	180243525	.	T	.	.	PASS	END=180243576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	180243577	.	C	.	.	PASS	END=180243607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	180243608	.	C	.	.	PASS	END=180243634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:90:60
chr1	180243635	.	C	.	.	PASS	END=180243652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	180243653	.	A	.	.	PASS	END=180243658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	180243659	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:14:60
chr1	180243660	.	C	.	.	PASS	END=180243673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	180243674	.	C	.	.	PASS	END=180243685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	180243686	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:36:60
chr1	180243687	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	180243688	.	G	.	.	PASS	END=180243694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	180243695	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	180243696	.	G	.	.	PASS	END=180243698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	180243699	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	180243700	.	C	.	.	PASS	END=180243704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	180243705	.	T	.	.	LowGQX	END=180243731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	180243732	.	C	.	14.90	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:0.13:60:0
chr1	180243733	.	C	.	.	LowGQX	END=180243740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	180243741	.	C	.	.	LowGQX	END=180243750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	180243751	.	T	.	.	LowGQX	END=180243762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	180243763	.	T	.	.	LowGQX	END=180243765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	180257447	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:99:60
chr1	180257448	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr1	180257449	.	A	.	.	PASS	END=180257465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	180257466	.	C	.	.	PASS	END=180257496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	180257497	.	A	.	.	PASS	END=180257581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	180257582	.	G	.	.	PASS	END=180257609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	180257610	.	T	.	.	PASS	END=180257628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	180257629	.	T	.	.	PASS	END=180257637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	180257638	.	A	.	.	PASS	END=180257660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	180257661	.	A	.	.	PASS	END=180257684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	180257685	.	T	.	.	PASS	END=180257686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	180257687	.	T	.	.	PASS	END=180257691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	180257692	.	A	C	893.23	SB	DP=25;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=35.73;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,25:25:72.23:926,72,0:60:72:1.000
chr1	180257693	.	G	.	.	PASS	END=180257703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:63:60
chr1	180283776	.	A	.	.	PASS	END=180283896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	180283897	.	A	.	.	PASS	END=180283911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	180366600	.	G	.	.	PASS	END=180366684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	180366685	.	A	.	.	PASS	END=180366704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	180366705	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:99:60
chr1	180366706	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:57:60
chr1	180366707	.	C	.	.	PASS	END=180366736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	180366737	.	T	.	.	PASS	END=180366747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	180366748	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:33:60
chr1	180366749	.	A	.	.	PASS	END=180366791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	180382450	.	G	.	.	PASS	END=180382510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:91:60
chr1	180382511	.	T	.	.	PASS	END=180382570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	180382571	.	T	.	.	PASS	END=180382604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	180382605	.	C	.	.	PASS	END=180382648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	180382649	.	A	.	.	PASS	END=180382654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	180382655	.	G	.	.	PASS	END=180382657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	180399264	.	A	.	.	PASS	END=180399266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	180399267	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:60
chr1	180399268	.	A	.	.	PASS	END=180399294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	180399295	.	A	.	.	PASS	END=180399354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	180399355	.	C	.	.	PASS	END=180399400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	180399401	.	T	.	.	PASS	END=180399423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	180399424	.	A	.	.	PASS	END=180399448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	180461353	.	A	.	.	PASS	END=180461395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	180461396	.	A	.	.	PASS	END=180461445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	180461446	.	A	.	.	PASS	END=180461521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	180461522	.	A	.	.	PASS	END=180461551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	180464545	.	A	.	.	PASS	END=180464569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	180464570	.	C	.	.	PASS	END=180464667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	180464668	.	A	.	.	PASS	END=180464711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	180471129	.	A	.	.	PASS	END=180471159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	180471160	.	C	.	.	PASS	END=180471172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	180471173	.	A	.	.	PASS	END=180471199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	180471200	.	G	.	.	PASS	END=180471214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	180471215	.	C	.	.	PASS	END=180471300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	180471301	.	G	.	.	PASS	END=180471349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	180471350	.	C	.	.	PASS	END=180471379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	180471380	.	C	.	.	PASS	END=180471413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	180471414	.	G	.	.	PASS	END=180471436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	180471437	.	T	.	.	PASS	END=180471450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	180471451	.	T	.	.	PASS	END=180471452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	180601323	.	G	.	.	LowGQX	END=180601350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180601351	.	A	.	.	LowGQX	.	GT	./.
chr1	180601352	.	G	.	.	LowGQX	END=180601365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180601366	.	A	.	.	LowGQX	.	GT	./.
chr1	180601367	.	C	.	.	LowGQX	END=180601373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180601374	.	C	.	.	LowGQX	.	GT	./.
chr1	180601375	.	C	.	.	LowGQX	END=180601389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180601390	.	A	.	.	LowGQX	.	GT	./.
chr1	180601391	.	A	.	.	LowGQX	END=180601408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180601409	.	A	.	.	LowGQX	.	GT	./.
chr1	180601410	.	C	.	.	LowGQX	END=180601419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180601420	.	T	.	.	LowGQX	.	GT	./.
chr1	180601421	.	G	.	.	LowGQX	END=180601422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180651472	.	A	.	.	LowGQX	END=180651571	GT	./.
chr1	180756887	.	A	.	.	LowGQX	END=180756992	GT	./.
chr1	180772522	.	A	.	.	LowGQX	END=180772527	GT	./.
chr1	180772528	.	G	.	.	LowGQX	END=180772533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180772534	.	A	.	.	LowGQX	.	GT	./.
chr1	180772535	.	G	.	.	LowGQX	END=180772541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180772542	.	A	.	.	LowGQX	END=180772543	GT	./.
chr1	180772544	.	C	.	.	LowGQX	END=180772545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180772546	.	C	.	.	LowGQX	.	GT	./.
chr1	180772547	.	A	.	.	LowGQX	END=180772552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180772553	.	G	.	.	LowGQX	.	GT	./.
chr1	180772554	.	C	.	.	LowGQX	END=180772555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180772556	.	A	.	.	LowGQX	.	GT	./.
chr1	180772557	.	C	.	.	LowGQX	END=180772560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180772561	.	T	.	.	LowGQX	END=180772562	GT	./.
chr1	180772563	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180772564	.	G	.	.	LowGQX	.	GT	./.
chr1	180772565	.	A	.	.	LowGQX	END=180772566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180772567	.	T	.	.	LowGQX	.	GT	./.
chr1	180772568	.	G	.	.	LowGQX	END=180772569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180772570	.	G	.	.	LowGQX	END=180772571	GT	./.
chr1	180772572	.	T	.	.	LowGQX	END=180772574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180772575	.	A	.	.	LowGQX	.	GT	./.
chr1	180772576	.	G	.	.	LowGQX	END=180772579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180772580	.	T	.	.	LowGQX	END=180772581	GT	./.
chr1	180772582	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180772583	.	C	.	.	LowGQX	END=180772584	GT	./.
chr1	180772585	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180772586	.	G	.	.	LowGQX	.	GT	./.
chr1	180772587	.	A	.	.	LowGQX	END=180772593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180772594	.	G	.	.	LowGQX	.	GT	./.
chr1	180772595	.	A	.	.	LowGQX	END=180772597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180772598	.	G	.	.	LowGQX	END=180772599	GT	./.
chr1	180772600	.	A	.	.	LowGQX	END=180772604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180772605	.	C	.	.	LowGQX	.	GT	./.
chr1	180772606	.	T	.	.	LowGQX	END=180772749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180775196	.	A	.	.	LowGQX	END=180775263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180775264	.	G	.	.	LowGQX	.	GT	./.
chr1	180775265	.	G	.	.	LowGQX	END=180775273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180775274	.	G	.	.	LowGQX	.	GT	./.
chr1	180775275	.	G	.	.	LowGQX	END=180775279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180775280	.	T	.	.	LowGQX	.	GT	./.
chr1	180775281	.	G	.	.	LowGQX	END=180775287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180775288	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	180775289	.	T	.	.	LowGQX	END=180775291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180775292	.	A	.	.	LowGQX	.	GT	./.
chr1	180775293	.	G	.	.	LowGQX	END=180775294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180775295	.	T	.	.	LowGQX	END=180775349	GT	./.
chr1	180775602	.	C	.	.	LowGQX	END=180775701	GT	./.
chr1	180780481	.	A	.	.	LowGQX	END=180780633	GT	./.
chr1	180793887	.	A	.	.	LowGQX	END=180794081	GT	./.
chr1	180794299	.	A	.	.	LowGQX	END=180794482	GT	./.
chr1	180804008	.	A	.	.	LowGQX	END=180804183	GT	./.
chr1	180805656	.	A	.	.	LowGQX	END=180805863	GT	./.
chr1	180832842	.	A	.	.	LowGQX	END=180833012	GT	./.
chr1	180842937	.	A	.	.	LowGQX	END=180842941	GT	./.
chr1	180842942	.	T	.	.	LowGQX	END=180843080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180849210	.	A	.	.	LowGQX	END=180849435	GT	./.
chr1	180853123	.	T	.	.	LowGQX	END=180853222	GT	./.
chr1	180882295	.	G	.	.	LowGQX	END=180882454	GT	./.
chr1	180885288	.	A	.	.	LowGQX	END=180886238	GT	./.
chr1	180886969	.	T	.	.	LowGQX	END=180887068	GT	./.
chr1	180897564	.	A	.	.	LowGQX	END=180897568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	180897569	.	C	T	47.39	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=23.69;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:79,6,0:60:6:1.000
chr1	180897570	.	G	.	.	LowGQX	END=180897592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	180897593	.	G	.	.	LowGQX	END=180897639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	180897640	.	G	C	6.73	LowGQX;LowQD	BaseQRankSum=-1.380;DP=6;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.000;QD=1.12;ReadPosRankSum=0.720;SB=-22.53	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:4,2:6:35.68:36,0,81:60:7:0.333
chr1	180897641	.	C	.	.	LowGQX	END=180897710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	180897711	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	180904249	.	A	.	.	LowGQX	END=180904363	GT	./.
chr1	180904364	.	G	.	.	LowGQX	END=180904502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	180904503	.	C	.	.	LowGQX	.	GT	./.
chr1	180904504	.	C	.	.	LowGQX	END=180904512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	180904513	.	T	.	.	LowGQX	END=180904609	GT	./.
chr1	180904610	.	G	.	.	LowGQX	END=180904631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904632	.	A	.	.	LowGQX	.	GT	./.
chr1	180904633	.	C	.	.	LowGQX	END=180904647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904648	.	A	.	.	LowGQX	.	GT	./.
chr1	180904649	.	G	.	.	LowGQX	END=180904659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904660	.	T	.	.	LowGQX	.	GT	./.
chr1	180904661	.	G	.	.	LowGQX	END=180904662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904663	.	G	.	.	LowGQX	.	GT	./.
chr1	180904664	.	G	.	.	LowGQX	END=180904665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904666	.	A	.	.	LowGQX	.	GT	./.
chr1	180904667	.	G	.	.	LowGQX	END=180904671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904672	.	A	.	.	LowGQX	.	GT	./.
chr1	180904673	.	T	.	.	LowGQX	END=180904675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904676	.	A	.	.	LowGQX	.	GT	./.
chr1	180904677	.	C	.	.	LowGQX	END=180904678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904679	.	A	.	.	LowGQX	.	GT	./.
chr1	180904680	.	C	.	.	LowGQX	END=180904682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904683	.	G	.	.	LowGQX	.	GT	./.
chr1	180904684	.	C	.	.	LowGQX	END=180904698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904699	.	A	.	.	LowGQX	.	GT	./.
chr1	180904700	.	A	.	.	LowGQX	END=180904704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904705	.	C	.	.	LowGQX	.	GT	./.
chr1	180904706	.	C	.	.	LowGQX	END=180904707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904708	.	C	.	.	LowGQX	.	GT	./.
chr1	180904709	.	C	.	.	LowGQX	END=180904719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904720	.	A	.	.	LowGQX	END=180904721	GT	./.
chr1	180904722	.	C	.	.	LowGQX	END=180904723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904724	.	T	.	.	LowGQX	.	GT	./.
chr1	180904725	.	C	.	.	LowGQX	END=180904726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904727	.	A	.	.	LowGQX	END=180904728	GT	./.
chr1	180904729	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904730	.	A	.	.	LowGQX	.	GT	./.
chr1	180904731	.	G	.	.	LowGQX	END=180904735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904736	.	A	.	.	LowGQX	.	GT	./.
chr1	180904737	.	G	.	.	LowGQX	END=180904738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904739	.	C	.	.	LowGQX	END=180904740	GT	./.
chr1	180904741	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904742	.	C	.	.	LowGQX	.	GT	./.
chr1	180904743	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904744	.	T	.	.	LowGQX	END=180904745	GT	./.
chr1	180904746	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904747	.	G	.	.	LowGQX	.	GT	./.
chr1	180904748	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904749	.	G	.	.	LowGQX	END=180904751	GT	./.
chr1	180904752	.	G	.	.	LowGQX	END=180904754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904755	.	G	.	.	LowGQX	END=180904756	GT	./.
chr1	180904757	.	G	.	.	LowGQX	END=180904759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904760	.	T	.	.	LowGQX	END=180904820	GT	./.
chr1	180904821	.	A	.	.	LowGQX	END=180904823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904824	.	G	.	.	LowGQX	.	GT	./.
chr1	180904825	.	A	.	.	LowGQX	END=180904840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904841	.	T	.	.	LowGQX	.	GT	./.
chr1	180904842	.	C	.	.	LowGQX	END=180904852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904853	.	T	.	.	LowGQX	.	GT	./.
chr1	180904854	.	G	.	.	LowGQX	END=180904855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904856	.	G	.	.	LowGQX	.	GT	./.
chr1	180904857	.	C	.	.	LowGQX	END=180904867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904868	.	T	.	.	LowGQX	.	GT	./.
chr1	180904869	.	G	.	.	LowGQX	END=180904883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904884	.	C	.	.	LowGQX	.	GT	./.
chr1	180904885	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904886	.	G	.	.	LowGQX	.	GT	./.
chr1	180904887	.	C	.	.	LowGQX	END=180904895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904896	.	C	.	.	LowGQX	.	GT	./.
chr1	180904897	.	T	.	.	LowGQX	END=180904898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904899	.	T	.	.	LowGQX	.	GT	./.
chr1	180904900	.	G	.	.	LowGQX	END=180904910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904911	.	G	.	.	LowGQX	.	GT	./.
chr1	180904912	.	A	.	.	LowGQX	END=180904919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904920	.	T	.	.	LowGQX	.	GT	./.
chr1	180904921	.	G	.	.	LowGQX	END=180904922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904923	.	G	.	.	LowGQX	.	GT	./.
chr1	180904924	.	G	.	.	LowGQX	END=180904955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904956	.	T	.	.	LowGQX	.	GT	./.
chr1	180904957	.	G	.	.	LowGQX	END=180904971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180904972	.	A	.	.	LowGQX	END=180905808	GT	./.
chr1	180907689	.	A	.	.	LowGQX	END=180907713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	180907714	.	T	.	.	LowGQX	.	GT	./.
chr1	180907715	.	C	.	.	LowGQX	END=180907776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180907777	.	G	.	.	LowGQX	.	GT	./.
chr1	180907778	.	A	.	.	LowGQX	END=180907796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	180907797	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	180907798	.	G	.	.	LowGQX	END=180907849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180910179	.	A	.	.	LowGQX	END=180910423	GT	./.
chr1	180913523	.	A	.	.	LowGQX	END=180913524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180913525	.	G	.	.	LowGQX	.	GT	./.
chr1	180913526	.	T	.	.	LowGQX	END=180913530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180913531	.	C	.	.	LowGQX	END=180913532	GT	./.
chr1	180913533	.	C	.	.	LowGQX	END=180913540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180913541	.	A	.	.	LowGQX	.	GT	./.
chr1	180913542	.	G	.	.	LowGQX	END=180913553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180913554	.	T	.	.	LowGQX	END=180913654	GT	./.
chr1	180914427	.	G	.	.	LowGQX	END=180914498	GT	./.
chr1	180914499	.	G	.	.	LowGQX	END=180914502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180914503	.	C	.	.	LowGQX	.	GT	./.
chr1	180914504	.	G	.	.	LowGQX	END=180914648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180914649	.	C	.	.	LowGQX	END=180914726	GT	./.
chr1	180919465	.	T	.	.	LowGQX	END=180919669	GT	./.
chr1	180941650	.	T	.	.	LowGQX	END=180941749	GT	./.
chr1	180945695	.	A	.	.	LowGQX	END=180945794	GT	./.
chr1	180949690	.	T	.	.	LowGQX	END=180949696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180949697	.	T	.	.	LowGQX	.	GT	./.
chr1	180949698	.	T	.	.	LowGQX	END=180949701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180949702	.	T	.	.	LowGQX	.	GT	./.
chr1	180949703	.	T	.	.	LowGQX	END=180949704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180949705	.	T	.	.	LowGQX	.	GT	./.
chr1	180949706	.	T	.	.	LowGQX	END=180949708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180949709	.	G	.	.	LowGQX	END=180949854	GT	./.
chr1	180949855	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180949856	.	A	.	.	LowGQX	END=180949857	GT	./.
chr1	180949858	.	T	.	.	LowGQX	END=180949860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180949861	.	G	.	.	LowGQX	END=180949865	GT	./.
chr1	180949866	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	180949867	.	G	.	.	LowGQX	END=180949868	GT	./.
chr1	180953811	.	A	.	.	LowGQX	END=180953910	GT	./.
chr1	180957373	.	A	.	.	LowGQX	END=180957483	GT	./.
chr1	180959118	.	A	.	.	LowGQX	END=180959247	GT	./.
chr1	180962481	.	A	.	.	LowGQX	END=180962580	GT	./.
chr1	180971740	.	A	.	.	LowGQX	END=180971839	GT	./.
chr1	180974428	.	A	.	.	LowGQX	END=180974601	GT	./.
chr1	180991743	.	T	.	.	LowGQX	END=180991842	GT	./.
chr1	181003128	.	C	.	.	PASS	END=181003144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	181003145	.	T	.	.	PASS	END=181003220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	181003221	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:71:67:60
chr1	181003222	.	A	.	.	PASS	END=181003227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	181018186	.	A	.	.	PASS	END=181018272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:59
chr1	181018273	.	C	.	.	PASS	END=181018297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	181018298	.	A	.	.	PASS	END=181018345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	181018346	.	C	.	.	PASS	END=181018399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	181018400	.	A	.	.	PASS	END=181018439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	181018440	.	A	.	.	PASS	END=181018450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	181019145	.	A	.	.	PASS	END=181019147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	181019148	.	G	.	.	PASS	END=181019217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	181019218	.	T	.	.	PASS	END=181019244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	181019245	.	A	.	.	PASS	END=181019274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	181019275	.	G	.	.	PASS	END=181019353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	181019354	.	T	.	.	PASS	END=181019415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	181019416	.	A	.	.	PASS	END=181019430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	181019431	.	A	.	.	PASS	END=181019456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	181019457	.	C	.	.	PASS	END=181019481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	181021369	.	A	.	.	PASS	END=181021380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	181021381	.	G	.	.	PASS	END=181021459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	181021460	.	A	.	.	PASS	END=181021571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	181021572	.	A	.	.	PASS	END=181021620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	181021621	.	C	.	.	PASS	END=181021648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	181022707	.	A	.	.	PASS	END=181022794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	181022795	.	T	.	.	PASS	END=181022809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	181022810	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:66:60
chr1	181022811	.	G	.	.	PASS	END=181022815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	181024332	.	A	.	.	PASS	END=181024364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	181024365	.	A	.	.	PASS	END=181024431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	181058027	.	C	.	.	LowGQX	END=181059026	GT	./.
chr1	181452880	.	G	.	.	PASS	END=181452888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	181452889	.	C	.	.	PASS	END=181452942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	181452943	.	G	.	.	PASS	END=181453019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	181453020	.	C	.	.	PASS	END=181453146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	181479612	.	C	.	.	PASS	END=181479665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:81:60
chr1	181479666	.	C	.	.	PASS	END=181479687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	181479688	.	G	.	.	PASS	END=181479718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:96:60
chr1	181480506	.	G	.	.	PASS	END=181480607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	181480608	.	T	.	.	PASS	END=181480622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	181480623	.	G	.	.	PASS	END=181480643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	181480644	.	T	.	.	PASS	END=181480646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	181546901	.	G	.	.	PASS	END=181546995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:91:60
chr1	181546996	.	G	.	.	PASS	END=181547005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	181548207	.	G	.	.	PASS	END=181548233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	181548234	.	A	.	.	PASS	END=181548337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:263:99:60
chr1	181548338	.	A	.	.	PASS	END=181548340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:247:99:60
chr1	181548341	.	A	G	3392.10	PASS	BaseQRankSum=0.428;DP=246;Dels=0.00;FS=2.311;HRun=0;HaplotypeScore=14.2560;MQ=60;MQ0=0;MQRankSum=-0.365;QD=13.79;ReadPosRankSum=0.437;SB=-1431.18	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:112,133:246:99:3392,0,2604:60:99:0.543
chr1	181548342	.	T	.	.	PASS	END=181548360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	181549730	.	G	.	.	PASS	END=181549753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	181549754	.	C	.	.	PASS	END=181549760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	181549761	.	C	.	.	PASS	END=181549898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr1	181549899	.	C	.	.	PASS	END=181549909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	181549910	.	A	.	.	PASS	END=181549912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	181620473	.	G	.	.	PASS	END=181620506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	181620507	.	C	.	.	PASS	END=181620556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	181620557	.	A	.	.	PASS	END=181620581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	181680089	.	G	.	.	PASS	END=181680112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	181680113	.	G	.	.	PASS	END=181680186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	181680187	.	G	.	.	PASS	END=181680205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	181684451	.	C	.	.	PASS	END=181684527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	181684528	.	G	.	.	PASS	END=181684550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	181685171	.	T	.	.	PASS	END=181685253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	181685254	.	T	.	.	PASS	END=181685270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	181686228	.	G	.	.	PASS	END=181686233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	181686234	.	C	.	.	PASS	END=181686266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	181686267	.	G	.	.	PASS	END=181686382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	181686383	.	T	.	.	PASS	END=181686422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	181686423	.	C	.	.	PASS	END=181686438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	181687190	.	G	.	.	PASS	END=181687242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	181687243	.	G	.	.	PASS	END=181687294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	181687295	.	G	.	.	PASS	END=181687303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	181688886	.	G	.	.	PASS	END=181688918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	181688919	.	G	.	.	PASS	END=181688932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	181688933	.	C	.	.	PASS	END=181688999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	181689341	.	G	.	.	PASS	END=181689372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	181689373	.	T	.	.	PASS	END=181689390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	181689391	.	A	.	.	PASS	END=181689456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	181689457	.	C	.	.	PASS	END=181689473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	181689905	.	A	.	.	PASS	END=181689979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	181689980	.	A	.	.	PASS	END=181689993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	181689994	.	A	.	.	PASS	END=181690004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	181690893	.	G	.	.	PASS	END=181690895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	181690896	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:49:60
chr1	181690897	.	C	.	.	PASS	END=181690920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr1	181690921	.	G	.	.	PASS	END=181690935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	181690936	.	A	.	.	PASS	END=181691011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	181693590	.	T	.	.	PASS	END=181693621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	181693622	.	G	.	.	PASS	END=181693689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	181695200	.	G	.	.	PASS	END=181695281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	181695282	.	A	.	.	PASS	END=181695299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	181700289	.	C	.	.	PASS	END=181700374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	181700375	.	T	.	.	PASS	END=181700388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	181701519	.	G	.	.	PASS	END=181701632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	181701633	.	C	.	.	PASS	END=181701679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	181701680	.	C	.	.	PASS	END=181701817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	181701818	.	G	.	.	PASS	END=181702050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	181702051	.	C	.	.	PASS	END=181702147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr1	181702148	.	G	.	.	PASS	END=181702170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	181702572	.	G	.	.	PASS	END=181702604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	181702605	.	G	.	.	PASS	END=181702679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	181702680	.	T	.	.	PASS	END=181702756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	181702757	.	G	.	.	PASS	END=181702847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:250:99:60
chr1	181702848	.	C	.	.	PASS	END=181702871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	181702872	.	C	.	.	PASS	END=181702886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	181705410	.	G	.	.	PASS	END=181705417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	181705418	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:38:60
chr1	181705419	.	A	.	.	PASS	END=181705428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	181705429	.	G	.	.	PASS	END=181705479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	181705480	.	T	.	.	PASS	END=181705517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:66:60
chr1	181705518	.	G	.	.	PASS	END=181705530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:63:60
chr1	181705531	.	T	.	.	PASS	END=181705537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:57:60
chr1	181705538	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:34:18:60
chr1	181705539	.	A	.	.	PASS	END=181705557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	181705558	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:15:60
chr1	181705559	.	C	.	.	PASS	END=181705569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	181705570	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:63:60
chr1	181706660	.	G	.	.	PASS	END=181706675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	181706676	.	C	.	.	PASS	END=181706781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	181706782	.	C	.	.	PASS	END=181706790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	181707483	.	C	.	.	PASS	END=181707537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	181707538	.	G	.	.	PASS	END=181707561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	181707562	.	G	.	.	PASS	END=181707582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	181708232	.	G	.	.	PASS	END=181708264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	181708265	.	G	.	.	PASS	END=181708303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	181708304	.	C	.	.	PASS	END=181708373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	181708374	.	T	.	.	PASS	END=181708389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	181714440	.	G	.	.	LowGQX	END=181714447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	181714448	.	G	.	.	LowGQX	END=181714450	GT	./.
chr1	181714451	.	T	.	.	LowGQX	END=181714457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	181714458	.	A	.	.	LowGQX	.	GT	./.
chr1	181714459	.	C	.	.	LowGQX	END=181714480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	181714481	.	A	.	.	LowGQX	END=181714482	GT	./.
chr1	181714483	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	181714484	.	T	.	.	LowGQX	.	GT	./.
chr1	181714485	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	181714486	.	A	.	.	LowGQX	.	GT	./.
chr1	181714487	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	181714488	.	A	.	.	LowGQX	END=181714539	GT	./.
chr1	181719568	.	T	.	.	PASS	END=181719667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	181721074	.	C	.	.	PASS	END=181721113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	181721114	.	G	.	.	PASS	END=181721115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	181721116	.	A	.	.	PASS	END=181721123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	181721124	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:15:60
chr1	181721125	.	C	.	.	PASS	END=181721134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	181721135	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:42:60
chr1	181721136	.	T	.	.	PASS	END=181721139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	181721140	.	A	.	.	PASS	END=181721146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	181721147	.	T	.	.	PASS	END=181721152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	181721153	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:18:60
chr1	181721154	.	T	.	.	PASS	END=181721173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	181721277	.	A	.	.	PASS	END=181721289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	181721290	.	G	.	.	PASS	END=181721296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	181721297	.	C	.	.	PASS	END=181721355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	181721356	.	A	.	.	PASS	END=181721371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	181721372	.	C	.	.	PASS	END=181721376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	181724372	.	G	.	.	PASS	END=181724385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	181724386	.	G	.	.	PASS	END=181724451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	181724452	.	T	.	.	PASS	END=181724506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	181724507	.	T	.	.	PASS	END=181724526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	181724527	.	A	.	.	PASS	END=181724533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	181725091	.	G	.	.	PASS	END=181725100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:93:60
chr1	181725101	.	T	.	.	PASS	END=181725196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	181725197	.	C	.	.	PASS	END=181725224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:60
chr1	181725225	.	C	.	.	PASS	END=181725229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	181726060	.	G	.	.	PASS	END=181726066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	181726067	.	G	.	.	PASS	END=181726074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	181726075	.	C	.	.	PASS	END=181726091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	181726092	.	G	.	.	PASS	END=181726137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr1	181726138	.	T	.	.	PASS	END=181726222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr1	181726223	.	G	.	.	PASS	END=181726231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	181726232	.	G	.	.	PASS	END=181726249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	181726250	.	G	.	.	PASS	END=181726262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	181727082	.	G	.	.	PASS	END=181727115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	181727116	.	C	.	.	PASS	END=181727216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	181727217	.	C	.	.	PASS	END=181727239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	181727240	.	T	.	.	PASS	END=181727247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	181727893	.	G	.	.	PASS	END=181727912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:82:60
chr1	181727913	.	C	.	.	PASS	END=181727997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	181727998	.	C	.	.	PASS	END=181728004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	181731648	.	T	.	.	PASS	END=181731656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	181731657	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:42:60
chr1	181731658	.	T	.	.	PASS	END=181731667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	181731668	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:69:60
chr1	181731669	.	T	.	.	PASS	END=181731671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	181731672	.	C	.	.	PASS	END=181731673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:63:60
chr1	181731674	.	T	.	.	PASS	END=181731685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	181731686	.	C	.	.	PASS	END=181731751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	181731752	.	G	.	.	PASS	END=181731806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	181731807	.	A	.	.	PASS	END=181731829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	181731830	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:60:60
chr1	181731831	.	C	.	.	PASS	END=181731838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	181731839	.	A	.	.	PASS	END=181731858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	181732541	.	G	.	.	PASS	END=181732656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:311:99:60
chr1	181732657	.	A	.	.	PASS	END=181732667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:299:99:60
chr1	181735665	.	C	.	.	PASS	END=181735686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	181735687	.	C	.	.	PASS	END=181735763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	181735764	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:89:99:60
chr1	181740425	.	C	.	.	PASS	END=181740523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	181740524	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:92:99:60
chr1	181741201	.	G	.	.	PASS	END=181741275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	181741276	.	C	.	.	PASS	END=181741367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	181745236	.	G	.	.	PASS	END=181745348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	181745349	.	A	.	.	PASS	END=181745364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:85:60
chr1	181745365	.	G	.	.	PASS	END=181745374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	181745375	.	C	.	.	PASS	END=181745382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	181745383	.	C	.	.	PASS	END=181745408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	181745409	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:36:60
chr1	181745410	.	C	.	.	PASS	END=181745444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	181745445	.	C	.	.	PASS	END=181745455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	181745456	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:39:60
chr1	181745457	.	C	.	.	LowGQX	END=181745458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	181745459	.	G	.	.	PASS	END=181745471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	181745472	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	181745473	.	G	.	.	PASS	END=181745475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	181745476	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	181745477	.	G	.	.	PASS	END=181745482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	181745483	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	181745484	.	C	.	.	PASS	END=181745487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	181745488	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	181745489	.	T	.	.	PASS	END=181745491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	181748577	.	A	.	.	LowGQX	END=181748676	GT	./.
chr1	181750561	.	A	.	.	PASS	END=181750576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr1	181750577	.	A	.	.	PASS	END=181750600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	181750601	.	C	.	.	PASS	END=181750660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	181752814	.	G	.	.	PASS	END=181752827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	181752828	.	T	.	.	PASS	END=181752846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	181752847	.	G	.	.	PASS	END=181752920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	181753796	.	G	.	.	PASS	END=181753831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	181753832	.	C	.	.	PASS	END=181753893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	181753894	.	C	.	.	PASS	END=181753904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	181754453	.	G	.	.	PASS	END=181754494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	181754495	.	A	.	.	PASS	END=181754542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	181754543	.	C	.	.	PASS	END=181754554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	181754798	.	A	.	.	PASS	END=181754931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	181754932	.	C	.	.	PASS	END=181754954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	181754955	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:123:99:60
chr1	181759580	.	G	.	.	PASS	END=181759656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	181759657	.	G	A	2147.93	PASS	BaseQRankSum=2.220;DP=220;Dels=0.00;FS=6.044;HRun=0;HaplotypeScore=25.8198;MQ=60;MQ0=0;MQRankSum=-1.076;QD=9.76;ReadPosRankSum=0.454;SB=-1117.62	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:120,98:220:99:2178,0,2643:60:99:0.450
chr1	181759658	.	C	.	.	PASS	END=181759692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	181762800	.	G	.	.	PASS	END=181762890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	181762891	.	A	.	.	PASS	END=181762929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	181763999	.	G	.	.	PASS	END=181764010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	181764011	.	C	.	.	PASS	END=181764046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	181764047	.	G	.	.	PASS	END=181764158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	181764159	.	C	.	.	PASS	END=181764172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	181764173	.	T	.	.	PASS	END=181764180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	181765803	.	G	.	.	PASS	END=181765819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	181765820	.	T	.	.	PASS	END=181765970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	181765971	.	A	.	.	PASS	END=181765994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	181767427	.	G	.	.	PASS	END=181767463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	181767464	.	G	.	.	PASS	END=181767507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	181767508	.	A	.	76.57	PASS	DP=115;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:91:115:46.58:60:47
chr1	181767509	.	C	.	.	PASS	END=181767533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	181767534	.	T	.	156.54	PASS	DP=122;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:97:122:99:60:99
chr1	181767535	.	C	.	.	PASS	END=181767602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	181767603	.	G	.	.	PASS	END=181767638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	181767639	.	A	.	.	PASS	END=181767741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	181767742	.	C	.	.	PASS	END=181767778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	181767779	.	A	.	.	PASS	END=181767822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	181767823	.	C	.	.	PASS	END=181767886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	181767887	.	A	.	.	PASS	END=181767916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	181767917	.	T	.	.	PASS	END=181767935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	181767936	.	T	.	.	PASS	END=181767956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	181767957	.	A	.	.	PASS	END=181767958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:62:60
chr1	181767959	.	G	.	.	PASS	END=181767964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	181767965	.	T	.	.	PASS	END=181767966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	181767967	.	C	.	.	PASS	END=181767970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	182025437	.	C	.	.	LowGQX	END=182025620	GT	./.
chr1	182025621	.	A	.	.	LowGQX	END=182025769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182025770	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	182025771	.	G	.	.	LowGQX	END=182026267	GT	./.
chr1	182026268	.	G	.	.	LowGQX	END=182026363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182026364	.	T	.	.	LowGQX	.	GT	./.
chr1	182026365	.	T	.	.	LowGQX	END=182026416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182026417	.	T	.	.	LowGQX	END=182026545	GT	./.
chr1	182026546	.	G	.	.	LowGQX	END=182026571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182026572	.	A	.	.	LowGQX	.	GT	./.
chr1	182026573	.	A	.	.	LowGQX	END=182026882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182026883	.	C	.	.	LowGQX	END=182027147	GT	./.
chr1	182353489	.	G	.	.	PASS	END=182353495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	182353496	.	G	.	.	PASS	END=182353503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	182353504	.	A	.	.	PASS	END=182353516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	182353517	.	C	.	.	PASS	END=182353535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	182353536	.	C	.	.	PASS	END=182353560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	182353561	.	C	.	.	PASS	END=182353588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	182353589	.	G	.	.	PASS	END=182353612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	182353613	.	G	.	.	PASS	END=182353637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	182353638	.	G	.	.	PASS	END=182353685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	182353686	.	G	.	.	PASS	END=182353777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	182353778	.	T	.	.	PASS	END=182353795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	182353796	.	T	.	.	PASS	END=182353816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	182353817	.	T	.	.	PASS	END=182353836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	182353837	.	C	.	.	PASS	END=182353861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	182353862	.	G	.	.	PASS	END=182353883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	182353884	.	T	.	.	PASS	END=182353886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	182353887	.	A	.	.	PASS	END=182353892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	182353893	.	G	.	.	PASS	END=182353909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	182354441	.	C	.	.	PASS	END=182354453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	182354454	.	A	.	.	PASS	END=182354457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	182354458	.	G	.	.	PASS	END=182354460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr1	182354461	.	A	.	.	PASS	END=182354467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	182354468	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:28:60
chr1	182354469	.	T	.	.	PASS	END=182354475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	182354476	.	A	.	.	PASS	END=182354490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	182354491	.	C	.	.	PASS	END=182354504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	182354505	.	C	.	.	PASS	END=182354516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	182354517	.	C	.	.	PASS	END=182354551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:59
chr1	182354552	.	T	.	.	PASS	END=182354584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:58
chr1	182354585	.	G	.	.	PASS	END=182354657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:58
chr1	182354658	.	T	.	.	PASS	END=182354728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	182354729	.	C	.	.	PASS	END=182354742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	182354844	.	C	.	.	PASS	END=182354849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	182354850	.	A	G	983.70	PASS	BaseQRankSum=-0.967;DP=101;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=0.939;QD=9.74;ReadPosRankSum=0.513;SB=-464.73	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:58,42:101:99:1014,0,1572:60:99:0.420
chr1	182354851	.	C	.	.	PASS	END=182354881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	182354882	.	G	.	.	PASS	END=182354990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	182354991	.	T	.	.	PASS	END=182355018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	182355019	.	G	.	.	PASS	END=182355037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	182355038	.	G	.	.	PASS	END=182355045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:78:60
chr1	182355046	.	A	G	509.96	PASS	BaseQRankSum=-1.513;DP=66;Dels=0.00;FS=2.337;HRun=0;HaplotypeScore=7.7233;MQ=60;MQ0=0;MQRankSum=0.673;QD=7.73;ReadPosRankSum=0.073;SB=-273.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,24:66:99:540,0,1169:60:99:0.364
chr1	182355047	.	C	.	.	PASS	END=182355073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	182355340	.	T	.	.	PASS	END=182355345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	182355346	.	G	.	.	PASS	END=182355368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	182355369	.	C	.	.	PASS	END=182355371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	182355372	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:63:60
chr1	182355373	.	T	.	.	PASS	END=182355407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	182355408	.	C	.	.	PASS	END=182355440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	182355441	.	G	.	.	PASS	END=182355451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	182355452	.	G	.	.	PASS	END=182355457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	182355458	.	C	.	.	PASS	END=182355588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	182356215	.	C	.	.	PASS	END=182356227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	182356228	.	G	.	.	PASS	END=182356241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	182356242	.	A	.	.	PASS	END=182356253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	182356254	.	G	.	.	PASS	END=182356307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	182356308	.	G	.	.	PASS	END=182356367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:93:60
chr1	182356368	.	C	.	.	PASS	END=182356395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	182356396	.	A	.	.	PASS	END=182356398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	182356399	.	A	G	1051.75	PASS	BaseQRankSum=-1.599;DP=74;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=-0.228;QD=14.21;ReadPosRankSum=0.174;SB=-577.41	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,41:74:99:1082,0,895:60:99:0.554
chr1	182356400	.	G	.	.	PASS	END=182356478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	182357656	.	C	.	.	PASS	END=182357657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	182357658	.	C	.	.	PASS	END=182357662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	182357663	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	182357664	.	A	.	.	PASS	END=182357665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	182357666	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:21:60
chr1	182357667	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:39:60
chr1	182357668	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:60
chr1	182357669	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:14:60
chr1	182357670	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:42:60
chr1	182357671	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:60
chr1	182357672	.	C	.	.	PASS	END=182357673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	182357674	.	C	.	.	PASS	END=182357675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	182357676	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:33:60
chr1	182357677	.	C	.	.	PASS	END=182357688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	182357689	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:63:60
chr1	182357690	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:38:60
chr1	182357691	.	C	.	.	PASS	END=182357708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	182357709	.	T	.	.	PASS	END=182357715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr1	182357716	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:35:60
chr1	182357717	.	C	.	.	PASS	END=182357729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	182357730	.	T	.	.	PASS	END=182357754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:78:60
chr1	182357755	.	G	.	.	PASS	END=182357778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	182357779	.	A	.	.	PASS	END=182357795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	182357796	.	A	.	.	PASS	END=182357879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	182357880	.	G	.	.	PASS	END=182357923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	182368797	.	T	.	.	LowGQX	END=182369056	GT	./.
chr1	182369057	.	C	.	.	LowGQX	END=182369077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182369078	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	182369079	.	G	.	.	LowGQX	END=182369166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182369167	.	T	.	.	LowGQX	END=182369183	GT	./.
chr1	182369184	.	G	.	.	LowGQX	END=182369232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182369233	.	A	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	182369234	.	A	.	.	LowGQX	END=182369329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182369330	.	C	.	.	LowGQX	END=182369376	GT	./.
chr1	182369377	.	C	.	.	LowGQX	END=182369511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182369512	.	C	.	.	LowGQX	.	GT	./.
chr1	182369513	.	A	.	.	LowGQX	END=182369607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182369608	.	C	.	.	LowGQX	END=182369622	GT	./.
chr1	182419257	.	A	.	.	LowGQX	END=182419356	GT	./.
chr1	182423084	.	T	.	.	LowGQX	END=182423183	GT	./.
chr1	182427441	.	C	.	.	LowGQX	END=182427540	GT	./.
chr1	182429138	.	G	.	.	LowGQX	END=182429164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182429165	.	C	.	.	LowGQX	END=182429268	GT	./.
chr1	182429759	.	A	.	.	LowGQX	END=182429891	GT	./.
chr1	182440416	.	G	.	.	LowGQX	END=182440521	GT	./.
chr1	182441530	.	G	.	.	LowGQX	END=182441692	GT	./.
chr1	182442709	.	G	.	.	LowGQX	END=182442803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182442804	.	C	.	.	LowGQX	END=182442809	GT	./.
chr1	182442810	.	C	.	.	LowGQX	END=182442819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182442820	.	C	.	.	LowGQX	.	GT	./.
chr1	182442821	.	C	.	.	LowGQX	END=182442827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182442828	.	T	.	.	LowGQX	END=182442829	GT	./.
chr1	182442830	.	A	.	.	LowGQX	END=182442890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182442891	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	182442892	.	G	.	.	LowGQX	END=182442958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182442959	.	A	.	.	LowGQX	END=182443677	GT	./.
chr1	182457412	.	G	.	.	LowGQX	END=182457476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182457477	.	T	.	.	LowGQX	END=182457511	GT	./.
chr1	182458114	.	G	.	.	LowGQX	END=182458203	GT	./.
chr1	182458204	.	G	.	.	LowGQX	END=182458337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182462106	.	A	.	.	LowGQX	END=182462264	GT	./.
chr1	182491138	.	G	.	.	LowGQX	END=182491173	GT	./.
chr1	182491174	.	G	.	.	LowGQX	END=182491297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182496713	.	G	.	.	LowGQX	END=182496907	GT	./.
chr1	182499378	.	G	.	.	LowGQX	END=182499496	GT	./.
chr1	182499924	.	G	.	.	LowGQX	END=182500093	GT	./.
chr1	182501796	.	G	.	.	LowGQX	END=182501926	GT	./.
chr1	182509381	.	G	.	.	LowGQX	END=182509556	GT	./.
chr1	182517401	.	C	.	.	LowGQX	END=182517590	GT	./.
chr1	182517834	.	G	.	.	LowGQX	END=182517959	GT	./.
chr1	182520234	.	G	.	.	LowGQX	END=182520344	GT	./.
chr1	182522583	.	T	.	.	LowGQX	END=182522682	GT	./.
chr1	182523745	.	T	.	.	LowGQX	END=182523782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182523783	.	A	.	.	LowGQX	END=182523844	GT	./.
chr1	182525126	.	A	.	.	LowGQX	END=182525225	GT	./.
chr1	182544476	.	A	.	.	PASS	END=182544487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	182544488	.	G	.	.	PASS	END=182544500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	182544501	.	T	.	.	PASS	END=182544509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	182544510	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:72:60
chr1	182544511	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:30:60
chr1	182544512	.	C	.	.	PASS	END=182544519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	182544520	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:33:60
chr1	182544521	.	A	.	.	PASS	END=182544531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	182544532	.	A	.	.	PASS	END=182544539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	182544540	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:60
chr1	182544541	.	T	.	.	PASS	END=182544560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	182544561	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:72:60
chr1	182544562	.	C	.	.	PASS	END=182544571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	182544572	.	A	.	.	PASS	END=182544601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	182544602	.	G	.	.	PASS	END=182544631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	182544632	.	T	.	.	PASS	END=182544688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	182544689	.	A	.	.	PASS	END=182544746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	182544747	.	C	.	.	PASS	END=182544764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	182545340	.	T	.	.	PASS	END=182545389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	182545390	.	C	.	.	PASS	END=182545411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	182545412	.	A	.	.	PASS	END=182545467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	182545468	.	G	.	.	PASS	END=182545491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	182545492	.	C	.	.	PASS	END=182545575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	182548996	.	A	.	.	LowGQX	END=182549155	GT	./.
chr1	182550309	.	C	.	.	PASS	END=182550321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	182550322	.	T	.	.	PASS	END=182550332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	182550333	.	C	.	.	PASS	END=182550340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	182550341	.	C	.	.	PASS	END=182550391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	182550392	.	G	.	.	PASS	END=182550475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	182550476	.	G	.	.	PASS	END=182550487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	182550488	.	A	.	.	PASS	END=182550489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	182550490	.	C	.	.	PASS	END=182550501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	182550502	.	A	.	.	PASS	END=182550518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	182550519	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:25:60
chr1	182550520	.	T	.	.	PASS	END=182550526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	182550527	.	C	.	.	PASS	END=182550531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	182550532	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	182550533	.	A	.	.	PASS	END=182550535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	182550536	.	C	.	.	LowGQX	END=182550537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	182550538	.	T	.	.	LowGQX	END=182550540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	182550541	.	C	.	.	LowGQX	END=182550543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	182551137	.	T	.	.	PASS	END=182551146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:80:60
chr1	182551147	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:66:60
chr1	182551148	.	A	.	.	PASS	END=182551174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	182551175	.	A	.	.	PASS	END=182551222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	182551223	.	G	.	.	PASS	END=182551238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	182551239	.	C	.	.	PASS	END=182551336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	182551337	.	A	C	1370.18	PASS	BaseQRankSum=0.928;DP=105;Dels=0.00;FS=5.449;HRun=0;HaplotypeScore=9.6694;MQ=60;MQ0=0;MQRankSum=1.436;QD=13.05;ReadPosRankSum=0.883;SB=-735.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:49,56:105:99:1400,0,1115:60:99:0.533
chr1	182551338	.	T	.	.	PASS	END=182551376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	182551377	.	A	.	.	PASS	END=182551399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:88:60
chr1	182551400	.	A	.	.	PASS	END=182551444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:91:60
chr1	182553165	.	A	.	.	PASS	END=182553261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	182553262	.	C	.	.	PASS	END=182553300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr1	182553301	.	T	.	.	PASS	END=182553344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:79:60
chr1	182553345	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:51:60
chr1	182553346	.	A	.	.	PASS	END=182553352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	182554411	.	T	.	.	PASS	END=182554419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	182554420	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:45:60
chr1	182554421	.	T	.	.	PASS	END=182554455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	182554456	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:11:60
chr1	182554457	.	C	.	.	PASS	END=182554459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	182554460	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	182554461	.	C	.	.	PASS	END=182554477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	182554478	.	T	.	.	PASS	END=182554495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:89:60
chr1	182554496	.	G	.	.	PASS	END=182554510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	182554511	.	C	.	.	PASS	END=182554531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	182554532	.	C	.	.	PASS	END=182554556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	182554557	.	C	T	1260.51	PASS	BaseQRankSum=1.584;DP=109;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=12.3099;MQ=60;MQ0=0;MQRankSum=0.183;QD=11.56;ReadPosRankSum=-0.468;SB=-290.65	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:66,43:109:99:1291,0,1744:60:99:0.394
chr1	182554558	.	G	.	.	PASS	END=182554594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	182554595	.	T	.	.	PASS	END=182554629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	182554630	.	C	.	.	PASS	END=182554724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	182554725	.	G	.	.	PASS	END=182554740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	182554741	.	C	.	.	PASS	END=182554795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:328:99:60
chr1	182554796	.	C	.	.	PASS	END=182554887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:361:99:60
chr1	182554888	.	T	.	.	PASS	END=182554916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr1	182554917	.	T	.	.	PASS	END=182554942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	182554943	.	A	.	.	PASS	END=182555021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	182555022	.	G	.	.	PASS	END=182555098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	182555099	.	A	.	.	PASS	END=182555131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:267:99:60
chr1	182555132	.	G	.	.	PASS	END=182555358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:306:99:60
chr1	182555359	.	C	.	.	PASS	END=182555419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:384:99:60
chr1	182555420	.	G	.	.	PASS	END=182555542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:407:99:60
chr1	182555543	.	A	.	.	PASS	END=182555589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:290:99:60
chr1	182555590	.	C	.	.	PASS	END=182555641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	182555642	.	C	.	.	PASS	END=182555684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	182555685	.	A	.	.	PASS	END=182555699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	182555700	.	T	.	.	PASS	END=182555813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	182555814	.	T	.	.	PASS	END=182555900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	182555901	.	G	.	.	PASS	END=182555919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	182555920	.	T	.	.	PASS	END=182555944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	182555945	.	G	.	.	PASS	END=182555992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:90:60
chr1	182569425	.	A	.	.	LowGQX	END=182569534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182569535	.	G	.	.	LowGQX	END=182569650	GT	./.
chr1	182571029	.	C	.	.	LowGQX	END=182571269	GT	./.
chr1	182571538	.	A	.	.	LowGQX	END=182571637	GT	./.
chr1	182572362	.	A	.	.	LowGQX	END=182572378	GT	./.
chr1	182572379	.	T	.	.	LowGQX	END=182572475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182572476	.	T	.	.	LowGQX	.	GT	./.
chr1	182573263	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182573264	.	C	.	.	LowGQX	.	GT	./.
chr1	182573265	.	G	.	.	LowGQX	END=182573276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182573277	.	G	.	.	LowGQX	.	GT	./.
chr1	182573278	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	182573279	.	C	.	.	LowGQX	END=182573287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182573288	.	T	.	.	LowGQX	.	GT	./.
chr1	182573289	.	G	.	.	LowGQX	END=182573296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182573297	.	A	.	.	LowGQX	.	GT	./.
chr1	182573298	.	C	.	.	LowGQX	END=182573302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182573303	.	T	.	.	LowGQX	.	GT	./.
chr1	182573304	.	A	.	.	LowGQX	END=182573308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182573309	.	T	.	.	LowGQX	.	GT	./.
chr1	182573310	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	182573311	.	G	.	.	LowGQX	.	GT	./.
chr1	182573312	.	G	.	.	LowGQX	END=182573331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182573332	.	T	.	.	LowGQX	END=182573333	GT	./.
chr1	182573334	.	G	.	.	LowGQX	END=182573348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182573349	.	A	.	.	LowGQX	.	GT	./.
chr1	182573350	.	C	.	.	LowGQX	END=182573366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182573367	.	T	.	.	LowGQX	.	GT	./.
chr1	182573368	.	G	.	.	LowGQX	END=182573393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182573394	.	T	.	.	LowGQX	.	GT	./.
chr1	182573395	.	G	.	.	LowGQX	END=182573416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182573417	.	G	.	.	LowGQX	END=182573422	GT	./.
chr1	182615868	.	G	.	.	LowGQX	END=182616054	GT	./.
chr1	182617270	.	A	.	.	LowGQX	END=182617392	GT	./.
chr1	182617393	.	T	.	.	LowGQX	END=182617440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182635087	.	A	.	.	LowGQX	END=182635186	GT	./.
chr1	182636005	.	A	.	.	LowGQX	END=182636110	GT	./.
chr1	182638722	.	G	.	.	LowGQX	END=182638821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182640779	.	A	.	.	LowGQX	END=182640805	GT	./.
chr1	182640806	.	C	.	.	LowGQX	END=182640830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182640831	.	A	.	.	LowGQX	.	GT	./.
chr1	182640832	.	C	.	.	LowGQX	END=182640857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182640858	.	A	.	.	LowGQX	.	GT	./.
chr1	182640859	.	A	.	.	LowGQX	END=182640878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182641907	.	C	.	.	LowGQX	END=182641962	GT	./.
chr1	182641963	.	T	.	.	LowGQX	END=182642006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182763451	.	T	.	.	PASS	END=182763546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	182763547	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:60:60
chr1	182763548	.	A	.	.	PASS	END=182763617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	182763618	.	C	.	.	PASS	END=182763625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	182772782	.	A	.	.	PASS	END=182772805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	182772806	.	A	.	.	PASS	END=182772854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:93:60
chr1	182772855	.	G	.	.	PASS	END=182772859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	182772860	.	G	.	.	PASS	END=182772946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	182772947	.	A	.	.	PASS	END=182772957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	182775229	.	G	.	.	PASS	END=182775273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	182775274	.	G	.	.	PASS	END=182775333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	182775334	.	T	.	.	PASS	END=182775373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	182775374	.	G	.	.	PASS	END=182775394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	182775395	.	C	.	.	PASS	END=182775418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr1	182775493	.	G	.	.	PASS	END=182775539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:78:60
chr1	182775540	.	C	.	.	PASS	END=182775581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	182775582	.	G	.	.	PASS	END=182775650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	182775651	.	G	.	.	PASS	END=182775666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	182778319	.	G	.	.	LowGQX	END=182778419	GT	./.
chr1	182781240	.	T	.	.	PASS	END=182781291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	182781292	.	C	.	.	PASS	END=182781367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	182781368	.	T	.	.	PASS	END=182781380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	182781381	.	T	.	.	PASS	END=182781398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	182781399	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:64:99:60
chr1	182783866	.	G	.	.	PASS	END=182783962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	182783963	.	G	.	.	PASS	END=182783987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	182783988	.	C	.	.	PASS	END=182783989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:72:60
chr1	182783990	.	A	.	.	PASS	END=182784006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	182784007	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:75:60
chr1	182784008	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:39:60
chr1	182784009	.	T	.	.	PASS	END=182784022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	182784023	.	C	.	.	PASS	END=182784035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	182784036	.	C	.	.	PASS	END=182784039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	182784040	.	T	.	.	PASS	END=182784043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	182784044	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	182785798	.	G	.	.	PASS	END=182785800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	182785801	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:48:60
chr1	182785802	.	C	.	.	PASS	END=182785803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	182785804	.	G	.	.	PASS	END=182785821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	182785822	.	C	.	.	PASS	END=182785874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	182785875	.	G	.	.	PASS	END=182785942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	182785943	.	T	.	.	PASS	END=182785970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	182785971	.	C	.	.	PASS	END=182785992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	182787625	.	G	.	.	PASS	END=182787645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	182787646	.	G	.	.	PASS	END=182787675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	182787676	.	T	.	.	PASS	END=182787697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	182787698	.	T	.	.	PASS	END=182787798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	182787799	.	T	.	.	PASS	END=182787853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	182787854	.	G	.	.	PASS	END=182787886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	182787887	.	A	.	.	PASS	END=182787981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	182787982	.	G	.	.	PASS	END=182788000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	182788001	.	A	.	.	PASS	END=182788029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	182788030	.	T	.	.	PASS	END=182788037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	182788038	.	A	.	.	PASS	END=182788045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	182791199	.	A	.	.	PASS	END=182791266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	182791267	.	G	.	.	PASS	END=182791334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	182791335	.	G	.	.	PASS	END=182791368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	182791369	.	C	.	.	PASS	END=182791385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	182794865	.	T	.	.	PASS	END=182794877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	182794878	.	T	.	.	PASS	END=182794918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	182794919	.	T	.	.	PASS	END=182795006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	182797808	.	G	.	.	PASS	END=182797818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	182797819	.	C	.	.	PASS	END=182797846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr1	182797847	.	T	.	.	PASS	END=182797883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	182797884	.	C	.	.	PASS	END=182797920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	182797921	.	C	.	.	PASS	END=182798033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	182798034	.	T	.	.	PASS	END=182798065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	182798066	.	T	.	.	PASS	END=182798084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	182798085	.	C	.	.	PASS	END=182798094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:78:60
chr1	182798716	.	G	.	.	PASS	END=182798753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:96:60
chr1	182798754	.	A	.	.	PASS	END=182798792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	182798793	.	A	.	.	PASS	END=182798807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	182798808	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:72:60
chr1	182798809	.	C	.	.	PASS	END=182798815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	182811700	.	T	.	.	LowGQX	END=182811703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182811704	.	G	.	.	LowGQX	.	GT	./.
chr1	182811705	.	G	.	.	LowGQX	END=182811713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182811714	.	A	.	.	LowGQX	END=182811715	GT	./.
chr1	182811716	.	A	.	.	LowGQX	END=182811721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182811722	.	T	.	.	LowGQX	.	GT	./.
chr1	182811723	.	C	.	.	LowGQX	END=182811730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182811731	.	C	.	.	LowGQX	.	GT	./.
chr1	182811732	.	T	.	.	LowGQX	END=182811739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182811740	.	C	.	.	LowGQX	END=182811758	GT	./.
chr1	182811759	.	T	.	.	LowGQX	END=182811774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182811775	.	C	.	.	LowGQX	.	GT	./.
chr1	182811776	.	A	.	.	LowGQX	END=182811778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182811779	.	G	.	.	LowGQX	.	GT	./.
chr1	182811780	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182811781	.	G	.	.	LowGQX	END=182811782	GT	./.
chr1	182811783	.	A	.	.	LowGQX	END=182811789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182811790	.	A	.	.	LowGQX	.	GT	./.
chr1	182811791	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182811792	.	A	.	.	LowGQX	.	GT	./.
chr1	182811793	.	G	.	.	LowGQX	END=182811794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182811795	.	C	.	.	LowGQX	.	GT	./.
chr1	182811796	.	A	.	.	LowGQX	END=182811808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182811809	.	T	.	.	LowGQX	.	GT	./.
chr1	182811810	.	G	.	.	LowGQX	END=182811814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182812427	.	A	.	.	LowGQX	END=182812571	GT	./.
chr1	182821366	.	A	.	.	LowGQX	END=182821481	GT	./.
chr1	182822439	.	A	.	.	LowGQX	END=182822555	GT	./.
chr1	182823163	.	A	.	.	LowGQX	END=182823315	GT	./.
chr1	182825641	.	A	.	.	LowGQX	END=182825740	GT	./.
chr1	182827237	.	A	.	.	LowGQX	.	GT	./.
chr1	182827238	.	G	.	.	LowGQX	END=182827239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827240	.	G	.	.	LowGQX	.	GT	./.
chr1	182827241	.	A	.	.	LowGQX	END=182827246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827247	.	G	.	.	LowGQX	.	GT	./.
chr1	182827248	.	C	.	.	LowGQX	END=182827258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827259	.	G	.	.	LowGQX	.	GT	./.
chr1	182827260	.	G	.	.	LowGQX	END=182827270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827271	.	A	.	.	LowGQX	.	GT	./.
chr1	182827272	.	A	.	.	LowGQX	END=182827277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827278	.	C	.	.	LowGQX	END=182827285	GT	./.
chr1	182827286	.	T	.	.	LowGQX	END=182827377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827681	.	C	.	.	LowGQX	END=182827682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827683	.	T	.	.	LowGQX	.	GT	./.
chr1	182827684	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827685	.	G	.	.	LowGQX	END=182827686	GT	./.
chr1	182827687	.	T	.	.	LowGQX	END=182827690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827691	.	G	.	.	LowGQX	END=182827692	GT	./.
chr1	182827693	.	C	.	.	LowGQX	END=182827694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827695	.	T	.	.	LowGQX	.	GT	./.
chr1	182827696	.	A	.	.	LowGQX	END=182827710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827711	.	C	.	.	LowGQX	.	GT	./.
chr1	182827712	.	T	.	.	LowGQX	END=182827719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827720	.	T	.	.	LowGQX	.	GT	./.
chr1	182827721	.	A	.	.	LowGQX	END=182827729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827730	.	G	.	.	LowGQX	.	GT	./.
chr1	182827731	.	C	.	.	LowGQX	END=182827733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827734	.	C	.	.	LowGQX	.	GT	./.
chr1	182827735	.	A	.	.	LowGQX	END=182827764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827765	.	T	.	.	LowGQX	.	GT	./.
chr1	182827766	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827767	.	T	.	.	LowGQX	.	GT	./.
chr1	182827768	.	T	.	.	LowGQX	END=182827769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827770	.	C	.	.	LowGQX	.	GT	./.
chr1	182827771	.	C	.	.	LowGQX	END=182827772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827773	.	C	.	.	LowGQX	END=182827774	GT	./.
chr1	182827775	.	G	.	.	LowGQX	END=182827778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827779	.	A	.	.	LowGQX	.	GT	./.
chr1	182827780	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182827866	.	A	.	.	LowGQX	END=182828031	GT	./.
chr1	182828164	.	T	.	.	LowGQX	END=182828263	GT	./.
chr1	182829126	.	A	.	.	LowGQX	END=182829321	GT	./.
chr1	182835577	.	A	.	.	LowGQX	END=182835694	GT	./.
chr1	182835695	.	T	.	.	LowGQX	END=182835722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182836088	.	T	.	.	LowGQX	END=182836187	GT	./.
chr1	182841470	.	A	.	.	LowGQX	END=182841513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182841514	.	T	.	.	LowGQX	END=182841630	GT	./.
chr1	182843987	.	A	.	.	LowGQX	END=182844091	GT	./.
chr1	182844273	.	T	.	.	LowGQX	END=182844372	GT	./.
chr1	182845183	.	A	.	.	LowGQX	END=182845400	GT	./.
chr1	182845580	.	A	.	.	LowGQX	END=182845645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182845646	.	G	.	.	LowGQX	END=182845679	GT	./.
chr1	182845952	.	T	.	.	LowGQX	END=182846051	GT	./.
chr1	182847121	.	A	.	.	LowGQX	END=182847205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182847206	.	C	.	.	LowGQX	.	GT	./.
chr1	182847207	.	C	.	.	LowGQX	END=182847208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182847209	.	T	.	.	LowGQX	.	GT	./.
chr1	182847210	.	A	.	.	LowGQX	END=182847214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182847215	.	C	.	.	LowGQX	END=182847310	GT	./.
chr1	182848383	.	A	.	.	LowGQX	END=182848536	GT	./.
chr1	182848537	.	C	.	.	LowGQX	END=182848547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182849630	.	A	.	.	LowGQX	END=182849745	GT	./.
chr1	182850397	.	A	.	.	LowGQX	END=182850562	GT	./.
chr1	182850653	.	A	.	.	LowGQX	END=182850784	GT	./.
chr1	182852272	.	A	.	.	LowGQX	END=182852439	GT	./.
chr1	182852440	.	T	.	.	LowGQX	END=182852453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182852454	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	182852455	.	T	.	.	LowGQX	END=182852480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182852481	.	C	.	.	LowGQX	.	GT	./.
chr1	182852482	.	C	.	.	LowGQX	END=182852487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182852488	.	T	.	.	LowGQX	.	GT	./.
chr1	182852489	.	G	.	.	LowGQX	END=182852496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182852497	.	T	.	.	LowGQX	.	GT	./.
chr1	182852498	.	G	.	.	LowGQX	END=182852505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182852653	.	A	.	.	LowGQX	END=182852772	GT	./.
chr1	182853746	.	A	.	.	LowGQX	END=182853950	GT	./.
chr1	182856216	.	A	.	.	LowGQX	END=182856237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182856238	.	C	.	.	LowGQX	END=182856571	GT	./.
chr1	182869116	.	C	.	.	LowGQX	END=182869371	GT	./.
chr1	182872172	.	A	.	.	LowGQX	END=182872298	GT	./.
chr1	182873313	.	A	.	.	LowGQX	END=182873567	GT	./.
chr1	182874599	.	G	.	.	LowGQX	END=182874786	GT	./.
chr1	182898780	.	A	.	.	LowGQX	END=182898824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182898825	.	T	.	.	LowGQX	END=182898939	GT	./.
chr1	182908309	.	A	.	.	LowGQX	END=182908517	GT	./.
chr1	182908518	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908519	.	T	.	.	LowGQX	END=182908520	GT	./.
chr1	182908521	.	T	.	.	LowGQX	END=182908524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908525	.	A	.	.	LowGQX	.	GT	./.
chr1	182908526	.	C	.	.	LowGQX	END=182908527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908528	.	A	.	.	LowGQX	.	GT	./.
chr1	182908529	.	C	.	.	LowGQX	END=182908531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908532	.	G	.	.	LowGQX	.	GT	./.
chr1	182908533	.	A	.	.	LowGQX	END=182908536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908537	.	T	.	.	LowGQX	END=182908538	GT	./.
chr1	182908539	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908540	.	T	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	182908541	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	182908542	.	A	.	.	LowGQX	END=182908543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908544	.	C	.	.	LowGQX	.	GT	./.
chr1	182908545	.	A	.	.	LowGQX	END=182908546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908596	.	A	.	.	LowGQX	.	GT	./.
chr1	182908597	.	C	.	.	LowGQX	END=182908598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908599	.	T	.	.	LowGQX	.	GT	./.
chr1	182908600	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908601	.	C	.	.	LowGQX	.	GT	./.
chr1	182908602	.	A	.	.	LowGQX	END=182908605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908606	.	T	.	.	LowGQX	.	GT	./.
chr1	182908607	.	A	.	.	LowGQX	END=182908609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908610	.	T	.	.	LowGQX	END=182908611	GT	./.
chr1	182908612	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908613	.	T	.	.	LowGQX	END=182908614	GT	./.
chr1	182908615	.	C	.	.	LowGQX	END=182908625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908626	.	G	.	.	LowGQX	.	GT	./.
chr1	182908627	.	C	.	.	LowGQX	END=182908631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908632	.	T	.	.	LowGQX	.	GT	./.
chr1	182908633	.	A	.	.	LowGQX	END=182908635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908636	.	T	.	.	LowGQX	.	GT	./.
chr1	182908637	.	C	.	.	LowGQX	END=182908640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908641	.	C	.	.	LowGQX	.	GT	./.
chr1	182908642	.	A	.	.	LowGQX	END=182908645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908646	.	T	.	.	LowGQX	END=182908648	GT	./.
chr1	182908649	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908650	.	T	.	.	LowGQX	.	GT	./.
chr1	182908651	.	C	.	.	LowGQX	END=182908653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908654	.	C	.	.	LowGQX	.	GT	./.
chr1	182908655	.	A	.	.	LowGQX	END=182908656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908657	.	C	.	.	LowGQX	.	GT	./.
chr1	182908658	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908659	.	C	.	.	LowGQX	.	GT	./.
chr1	182908660	.	A	.	.	LowGQX	END=182908666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182908667	.	C	.	.	LowGQX	.	GT	./.
chr1	182908668	.	C	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	182908669	.	A	.	.	LowGQX	END=182908695	GT	./.
chr1	182909462	.	A	.	.	LowGQX	END=182909680	GT	./.
chr1	182920451	.	A	.	.	LowGQX	END=182920604	GT	./.
chr1	182920986	.	T	.	.	LowGQX	END=182921145	GT	./.
chr1	182921862	.	A	.	.	LowGQX	END=182921879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182921880	.	A	.	.	LowGQX	.	GT	./.
chr1	182921881	.	C	.	.	LowGQX	END=182921886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	182921887	.	C	.	.	LowGQX	.	GT	./.
chr1	182921888	.	G	.	.	LowGQX	END=182921920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182921921	.	C	.	.	LowGQX	.	GT	./.
chr1	182921922	.	C	.	.	LowGQX	END=182921953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182921954	.	G	.	.	LowGQX	.	GT	./.
chr1	182921955	.	G	.	.	LowGQX	END=182921964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182921965	.	C	.	.	LowGQX	END=182921966	GT	./.
chr1	182921967	.	T	.	.	LowGQX	END=182921970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182921971	.	C	.	.	LowGQX	.	GT	./.
chr1	182921972	.	A	.	.	LowGQX	END=182921987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182921988	.	A	.	.	LowGQX	END=182922487	GT	./.
chr1	182992846	.	G	.	.	LowGQX	END=182992878	GT	./.
chr1	182992879	.	G	.	.	LowGQX	END=182992898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	182992899	.	G	.	.	PASS	END=182992905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	182992906	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:18:60
chr1	182992907	.	C	.	.	PASS	END=182992909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	182992910	.	T	.	.	PASS	END=182992935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	182992936	.	G	.	.	PASS	END=182992945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	182992946	.	G	.	.	PASS	END=182992956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	182992957	.	G	.	.	PASS	END=182992967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	182992968	.	G	.	.	PASS	END=182992989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	182992990	.	C	.	.	PASS	END=182993023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	182993024	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:140:99:60
chr1	182993025	.	C	T	3608.33	PASS	BaseQRankSum=-0.968;DP=140;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=25.6718;MQ=60;MQ0=0;MQRankSum=-1.681;QD=25.77;ReadPosRankSum=-0.153;SB=-1036.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,135:140:99:3608,244,0:60:99:0.993
chr1	182993026	.	T	.	.	PASS	END=182993054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	182993055	.	G	.	.	PASS	END=182993080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	182993081	.	G	.	.	PASS	END=182993220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:258:99:60
chr1	182993221	.	C	.	.	PASS	END=182993241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	182993242	.	A	.	.	PASS	END=182993270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	182993271	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:145:99:60
chr1	183072461	.	A	.	.	PASS	END=183072479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	183072480	.	A	.	.	PASS	END=183072511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	183072512	.	C	.	.	PASS	END=183072589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:250:99:60
chr1	183072590	.	T	C	7301.93	PASS	DP=245;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=14.2038;MQ=60;MQ0=0;QD=29.80;SB=-3592.48	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,244:245:99:7302,554,0:60:99:1.000
chr1	183072591	.	G	.	.	PASS	END=183072641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	183072642	.	G	.	.	PASS	END=183072725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	183072726	.	A	.	.	PASS	END=183072767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	183072768	.	G	.	.	PASS	END=183072791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	183077369	.	C	.	.	PASS	END=183077511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	183077512	.	T	.	.	PASS	END=183077543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	183079621	.	A	.	.	PASS	END=183079648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	183079649	.	A	.	.	PASS	END=183079762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	183079763	.	C	.	.	PASS	END=183079790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	183079791	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:144:99:60
chr1	183083654	.	T	.	.	PASS	END=183083795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	183083796	.	G	.	.	PASS	END=183083844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	183083845	.	A	.	.	PASS	END=183083856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	183084653	.	A	.	.	PASS	END=183084666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:60
chr1	183084667	.	C	.	.	PASS	END=183084774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:288:99:60
chr1	183085710	.	A	.	.	PASS	END=183085737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	183085738	.	G	.	.	PASS	END=183085754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	183085755	.	A	G	4524.72	PASS	DP=136;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;QD=33.27;SB=-1258.17	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,135:136:99:4525,346,0:60:99:1.000
chr1	183085756	.	T	.	.	PASS	END=183085812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	183085900	.	A	.	.	PASS	END=183085993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	183085994	.	C	.	.	PASS	END=183086015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	183086016	.	T	.	.	PASS	END=183086040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	183086453	.	A	.	.	PASS	END=183086474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	183086475	.	G	.	.	PASS	END=183086498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	183086499	.	T	.	.	PASS	END=183086579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	183086667	.	A	.	.	PASS	END=183086695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr1	183086696	.	G	.	.	PASS	END=183086756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:286:99:60
chr1	183086757	.	A	C	8035.03	PASS	BaseQRankSum=1.022;DP=284;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=23.9265;MQ=60;MQ0=0;MQRankSum=-0.824;QD=28.29;ReadPosRankSum=1.571;SB=-3315.70	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:5,279:284:99:8035,542,0:60:99:0.982
chr1	183086758	.	G	.	.	PASS	END=183086817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr1	183086818	.	A	.	.	PASS	END=183086837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	183086838	.	C	.	.	PASS	END=183086848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	183086849	.	A	.	.	PASS	END=183086860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	183087167	.	A	.	.	PASS	END=183087273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	183087274	.	T	.	.	PASS	END=183087283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	183090856	.	A	.	.	PASS	END=183090902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	183090903	.	G	.	.	PASS	END=183091014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	183091015	.	A	.	.	PASS	END=183091081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr1	183091196	.	A	.	.	PASS	END=183091226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	183091227	.	G	.	.	PASS	END=183091307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	183091308	.	T	.	.	PASS	END=183091363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	183091364	.	C	.	.	PASS	END=183091374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	183091375	.	C	.	.	PASS	END=183091385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	183091386	.	G	.	.	PASS	END=183091388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	183093764	.	A	.	.	PASS	END=183093781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	183093782	.	C	.	.	PASS	END=183093874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	183093875	.	T	C	4308.42	PASS	DP=153;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.5754;MQ=60;MQ0=0;QD=28.16;SB=-2246.82	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,151:153:99:4308,328,0:60:99:1.000
chr1	183093876	.	G	.	.	PASS	END=183093934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	183093935	.	T	.	.	PASS	END=183093996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	183093997	.	C	.	.	PASS	END=183094013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	183094500	.	T	.	.	PASS	END=183094546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	183094547	.	T	C	4966.77	PASS	DP=188;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=10.5533;MQ=60;MQ0=0;QD=26.42;SB=-2892.58	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,187:188:99:4967,382,0:60:99:1.000
chr1	183094548	.	G	.	.	PASS	END=183094665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	183094666	.	A	.	.	PASS	END=183094687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	183095253	.	A	.	.	PASS	END=183095399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	183096359	.	A	.	.	PASS	END=183096374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	183096375	.	C	.	.	PASS	END=183096401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr1	183096402	.	A	.	.	PASS	END=183096521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	183096522	.	C	.	.	PASS	END=183096541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	183097727	.	A	.	.	PASS	END=183097755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	183097756	.	G	.	.	PASS	END=183097834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr1	183097835	.	A	.	.	PASS	END=183097867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	183097868	.	A	.	.	PASS	END=183097886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	183097887	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:136:99:60
chr1	183099477	.	A	.	.	PASS	END=183099503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	183099504	.	C	.	.	PASS	END=183099651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	183099652	.	C	.	.	PASS	END=183099678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	183099679	.	A	.	.	PASS	END=183099686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	183100424	.	T	.	.	PASS	END=183100444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	183100445	.	G	.	.	PASS	END=183100523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	183101533	.	A	.	.	PASS	END=183101577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	183101578	.	G	.	.	PASS	END=183101674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	183102539	.	A	.	.	PASS	END=183102569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	183102570	.	A	.	.	PASS	END=183102634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	183102635	.	A	.	.	PASS	END=183102656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	183102657	.	T	.	.	PASS	END=183102687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	183103793	.	A	.	.	PASS	END=183103842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	183103843	.	A	.	.	PASS	END=183103891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	183103892	.	G	.	.	PASS	END=183103946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	183104175	.	A	.	.	PASS	END=183104261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	183104262	.	A	.	.	PASS	END=183104275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	183104276	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:39:60
chr1	183104277	.	T	.	.	PASS	END=183104292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	183104293	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:63:60
chr1	183105519	.	A	.	.	PASS	END=183105533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	183105534	.	T	C	4011.67	PASS	DP=145;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=31.2483;MQ=60;MQ0=0;QD=27.67;SB=-2167.29	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,142:145:99:4012,316,0:60:99:1.000
chr1	183105535	.	G	.	.	PASS	END=183105561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	183105562	.	G	.	.	PASS	END=183105670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	183105671	.	C	.	.	PASS	END=183105697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	183105698	.	G	.	.	PASS	END=183105704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	183105705	.	G	A	3065.73	PASS	DP=102;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.9363;MQ=60;MQ0=0;QD=30.06;SB=-1385.87	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,102:102:99:3099,235,0:60:99:1.000
chr1	183105706	.	A	.	.	PASS	END=183105721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	183105722	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:69:99:60
chr1	183106802	.	A	.	.	PASS	END=183106934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	183106935	.	T	.	.	PASS	END=183106950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	183106951	.	A	.	.	PASS	END=183106964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	183109537	.	A	.	.	PASS	END=183109539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	183109540	.	C	.	.	PASS	END=183109559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	183109560	.	G	.	.	PASS	END=183109588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	183109589	.	C	.	.	PASS	END=183109640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:96:60
chr1	183111667	.	A	.	.	PASS	END=183111680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	183111681	.	C	.	.	PASS	END=183111752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	183111753	.	A	.	.	PASS	END=183111910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	183111911	.	A	.	.	PASS	END=183111927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	183155437	.	C	.	.	PASS	END=183155455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	183155456	.	C	.	.	PASS	END=183155481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	183155482	.	C	A	3475.77	PASS	BaseQRankSum=0.862;DP=139;Dels=0.00;FS=3.960;HRun=0;HaplotypeScore=9.4692;MQ=60;MQ0=0;MQRankSum=-0.196;QD=25.01;ReadPosRankSum=-0.746;SB=-1574.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:3,136:139:99:3476,232,0:60:99:0.978
chr1	183155483	.	C	.	.	PASS	END=183155592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	183155593	.	C	.	.	PASS	END=183155610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	183155611	.	A	.	.	PASS	END=183155617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	183176965	.	G	.	.	PASS	END=183176970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:59
chr1	183176970	.	G	GTT	1004.66	PASS	BaseQRankSum=2.894;DP=166;FS=1.410;HRun=15;HaplotypeScore=876.7365;MQ=59;MQ0=0;MQRankSum=-0.384;QD=6.05;ReadPosRankSum=-1.051;SB=-226.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:100,28:166:99:1044,0,292:59:99:0.219
chr1	183176971	.	T	.	.	PASS	END=183176985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:59
chr1	183176986	.	G	.	.	PASS	END=183176993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	183176994	.	C	.	225.59	PASS	DP=158;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:123:158:99:60:99
chr1	183176995	.	T	.	.	PASS	END=183177033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	183177034	.	A	.	.	PASS	END=183177185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	183177186	.	T	.	.	PASS	END=183177217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	183177218	.	A	G	4694.60	PASS	BaseQRankSum=0.264;DP=166;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=39.9177;MQ=60;MQ0=0;MQRankSum=0.616;QD=28.28;ReadPosRankSum=0.038;SB=-1368.46	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:3,157:166:99:4695,301,0:60:99:0.981
chr1	183177219	.	C	.	.	PASS	END=183177244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	183177245	.	A	.	.	PASS	END=183177255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	183184537	.	A	.	.	PASS	END=183184588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	183184589	.	T	.	.	PASS	END=183184627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	183184628	.	C	.	.	PASS	END=183184685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	183184686	.	C	.	.	PASS	END=183184729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	183184730	.	A	.	.	PASS	END=183184760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	183184761	.	A	.	.	PASS	END=183184772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	183184773	.	T	.	.	PASS	END=183184774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	183187474	.	T	.	.	PASS	END=183187574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	183187575	.	C	.	.	PASS	END=183187626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	183187627	.	T	.	.	PASS	END=183187637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	183187638	.	T	.	.	PASS	END=183187674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	183189909	.	A	.	.	PASS	END=183189969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	183189970	.	G	.	.	PASS	END=183190062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	183190063	.	A	.	.	PASS	END=183190088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	183190089	.	T	.	.	PASS	END=183190134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	183190135	.	T	.	.	PASS	END=183190145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	183190146	.	T	.	.	PASS	END=183190147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	183191173	.	A	.	.	PASS	END=183191176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	183191177	.	G	.	.	PASS	END=183191190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	183191191	.	G	.	.	PASS	END=183191222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	183191223	.	G	.	.	PASS	END=183191256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	183191257	.	G	.	.	PASS	END=183191355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	183191356	.	G	.	.	PASS	END=183191384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	183191385	.	T	.	.	PASS	END=183191397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	183192219	.	G	.	.	PASS	END=183192334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	183192335	.	A	.	.	PASS	END=183192363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	183192364	.	T	.	.	PASS	END=183192391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	183192392	.	A	.	.	PASS	END=183192409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:82:60
chr1	183192410	.	C	.	.	PASS	END=183192431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	183192432	.	G	.	.	PASS	END=183192437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	183192438	.	T	.	.	PASS	END=183192440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	183192441	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:36:60
chr1	183192442	.	C	.	.	PASS	END=183192447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	183192448	.	T	.	.	PASS	END=183192452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	183192453	.	C	.	.	PASS	END=183192470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	183192471	.	G	.	.	PASS	END=183192473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	183192474	.	C	.	.	PASS	END=183192481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	183192482	.	G	.	.	PASS	END=183192483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	183192484	.	T	.	.	PASS	END=183192497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	183192498	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	183192499	.	T	.	.	PASS	END=183192501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	183192502	.	G	.	.	PASS	END=183192510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	183194692	.	G	.	.	PASS	END=183194797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	183194798	.	C	.	.	PASS	END=183194822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	183194823	.	C	.	.	PASS	END=183194843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	183194844	.	A	.	.	PASS	END=183194851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	183194852	.	T	.	.	PASS	END=183194865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	183194866	.	A	.	.	PASS	END=183194893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	183194894	.	T	.	.	PASS	END=183194906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	183195782	.	G	.	.	PASS	END=183195783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	183195784	.	T	.	.	PASS	END=183195807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	183195808	.	T	.	.	PASS	END=183195814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	183195815	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:48:60
chr1	183195816	.	T	.	.	PASS	END=183195821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	183195822	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:51:60
chr1	183195823	.	T	.	.	PASS	END=183195841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	183195842	.	A	.	.	PASS	END=183195876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	183195877	.	G	.	.	PASS	END=183195898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	183195899	.	G	.	.	PASS	END=183195908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	183195909	.	G	.	.	PASS	END=183195969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	183195970	.	A	.	.	PASS	END=183196028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	183196029	.	A	.	.	PASS	END=183196052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	183196053	.	T	.	.	PASS	END=183196061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	183196062	.	T	.	.	PASS	END=183196088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	183196089	.	T	.	.	PASS	END=183196102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	183196599	.	T	.	.	PASS	END=183196605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	183196606	.	A	.	.	PASS	END=183196623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	183196624	.	C	.	.	PASS	END=183196644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	183196645	.	C	.	.	PASS	END=183196689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	183196690	.	T	.	.	PASS	END=183196750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	183196751	.	C	.	.	PASS	END=183196773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	183196774	.	C	.	.	PASS	END=183196794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:89:60
chr1	183196795	.	G	.	.	PASS	END=183196815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	183196816	.	C	.	.	PASS	END=183196831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	183196832	.	G	.	.	PASS	END=183196845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	183196846	.	T	.	.	PASS	END=183196847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	183196848	.	T	.	.	PASS	END=183196850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr1	183196851	.	T	.	.	PASS	END=183196868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	183196869	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:42:60
chr1	183196870	.	T	.	.	PASS	END=183196874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:78:60
chr1	183196875	.	T	.	.	PASS	END=183196883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	183197458	.	T	.	.	PASS	END=183197474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	183197475	.	G	.	.	PASS	END=183197478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:75:60
chr1	183197479	.	A	.	.	PASS	END=183197497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	183197498	.	T	.	.	PASS	END=183197515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	183197516	.	C	.	.	PASS	END=183197528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	183197529	.	G	.	.	PASS	END=183197558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	183197559	.	G	.	.	PASS	END=183197601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	183197602	.	A	.	.	PASS	END=183197675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	183197676	.	G	.	.	PASS	END=183197706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	183197707	.	G	.	.	PASS	END=183197728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	183197729	.	T	.	.	PASS	END=183197762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr1	183197763	.	C	.	.	PASS	END=183197782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	183197783	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:69:60
chr1	183197784	.	T	.	.	PASS	END=183197795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	183197796	.	T	.	.	PASS	END=183197800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	183197801	.	G	.	.	PASS	END=183197803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	183197804	.	T	.	.	PASS	END=183197805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	183200045	.	C	.	.	PASS	END=183200216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	183200217	.	C	.	.	PASS	END=183200252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	183200253	.	C	.	.	PASS	END=183200269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	183200270	.	C	.	.	PASS	END=183200289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	183201271	.	C	.	.	PASS	END=183201299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	183201300	.	G	.	.	PASS	END=183201308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	183201309	.	T	.	.	PASS	END=183201341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	183201342	.	G	.	.	PASS	END=183201395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	183201396	.	A	.	.	PASS	END=183201459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	183201460	.	G	.	.	PASS	END=183201529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	183201736	.	T	.	.	PASS	END=183201742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	183201743	.	T	.	.	PASS	END=183201747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	183201748	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:60:60
chr1	183201749	.	A	.	.	PASS	END=183201758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	183201759	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:60
chr1	183201760	.	A	.	.	PASS	END=183201764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	183201765	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:63:60
chr1	183201766	.	C	.	.	PASS	END=183201805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	183201806	.	T	.	.	PASS	END=183201828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:84:60
chr1	183201829	.	G	.	.	PASS	END=183201895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	183201896	.	G	.	.	PASS	END=183201956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	183201957	.	A	.	.	PASS	END=183201978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	183201979	.	C	.	.	PASS	END=183202008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	183202009	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:64:60
chr1	183202010	.	T	.	.	PASS	END=183202024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	183202025	.	A	.	.	PASS	END=183202031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	183202032	.	T	.	.	PASS	END=183202035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	183202036	.	G	.	.	PASS	END=183202040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	183202041	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:42:60
chr1	183202042	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:3:60
chr1	183202043	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chr1	183203451	.	A	.	.	PASS	END=183203559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	183203560	.	A	.	.	PASS	END=183203597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	183203598	.	G	.	.	PASS	END=183203625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	183203626	.	A	.	.	PASS	END=183203632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	183204659	.	A	.	.	PASS	END=183204698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	183204699	.	A	.	.	PASS	END=183204788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	183204789	.	C	.	.	PASS	END=183204808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	183204809	.	A	.	.	PASS	END=183204846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:96:60
chr1	183204847	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:63:60
chr1	183204848	.	G	.	.	PASS	END=183204855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	183204856	.	T	.	.	PASS	END=183204876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	183204877	.	C	.	.	PASS	END=183204896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	183204897	.	T	.	.	PASS	END=183204902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	183204903	.	T	.	.	PASS	END=183204908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	183204909	.	A	.	.	LowGQX	END=183204914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	183204915	.	A	.	.	LowGQX	END=183204916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	183205544	.	A	.	.	PASS	END=183205549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:60:59
chr1	183205550	.	A	.	.	PASS	END=183205553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:69:59
chr1	183205554	.	T	.	.	PASS	END=183205559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:60:59
chr1	183205560	.	T	.	.	PASS	END=183205563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:59
chr1	183205564	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:59
chr1	183205565	.	T	.	.	PASS	END=183205566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:69:59
chr1	183205567	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:63:60
chr1	183205568	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:41:60
chr1	183205569	.	C	.	.	PASS	END=183205575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	183205576	.	T	.	102.21	PASS	DP=41;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:28:41:72.21:60:72
chr1	183205577	.	C	.	.	PASS	END=183205580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	183205581	.	A	.	52.44	LowGQX	DP=43;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:31:43:22.44:60:22
chr1	183205582	.	C	.	.	PASS	END=183205589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	183205590	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:57:60
chr1	183205591	.	C	.	.	PASS	END=183205624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	183205625	.	G	.	.	PASS	END=183205689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:97:60
chr1	183205690	.	T	.	.	PASS	END=183205697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	183205698	.	T	.	.	PASS	END=183205719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	183205720	.	T	.	.	PASS	END=183205747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	183205748	.	A	.	.	PASS	END=183205761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	183205762	.	C	.	.	PASS	END=183205770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	183205771	.	C	.	.	PASS	END=183205774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	183205775	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	183205776	.	G	.	.	LowGQX	END=183205782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	183205783	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	183205784	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	183205785	.	A	.	.	PASS	END=183205786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	183205787	.	A	.	.	LowGQX	END=183205790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	183206436	.	G	.	.	PASS	END=183206497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	183206498	.	A	.	.	PASS	END=183206557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	183206558	.	G	.	.	PASS	END=183206673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:269:99:60
chr1	183206674	.	T	.	.	PASS	END=183206690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr1	183207391	.	T	.	.	PASS	END=183207442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	183207443	.	A	.	.	PASS	END=183207498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	183207499	.	C	.	.	PASS	END=183207549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	183207550	.	C	.	.	PASS	END=183207578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	183207579	.	C	.	.	PASS	END=183207605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	183207606	.	T	.	.	PASS	END=183207607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	183208448	.	T	.	.	PASS	END=183208497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	183208498	.	G	.	.	PASS	END=183208556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	183208557	.	C	.	.	PASS	END=183208677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	183208678	.	A	.	.	PASS	END=183208707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	183208708	.	A	.	.	PASS	END=183208732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	183208733	.	A	.	.	PASS	END=183208747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	183208748	.	G	.	.	PASS	END=183208749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	183209124	.	G	.	.	PASS	END=183209137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	183209138	.	T	.	.	PASS	END=183209231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	183209232	.	G	.	.	PASS	END=183209349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	183209350	.	T	.	.	PASS	END=183209447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr1	183209448	.	G	.	.	PASS	END=183209473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	183209474	.	G	.	.	PASS	END=183209498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	183209499	.	A	.	.	PASS	END=183209512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	183209513	.	C	.	.	PASS	END=183209534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	183212231	.	G	.	.	PASS	END=183212240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	183212241	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:6:60
chr1	183212242	.	A	.	.	PASS	END=183212262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	183212263	.	G	.	.	PASS	END=183212272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	183212273	.	T	.	.	PASS	END=183212284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	183212285	.	A	.	.	PASS	END=183212286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	183212287	.	C	.	.	PASS	END=183212293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	183212294	.	G	.	.	PASS	END=183212322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	183212323	.	G	.	.	PASS	END=183212348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	183212349	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:70:60
chr1	183212350	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:36:60
chr1	183212351	.	A	.	.	PASS	END=183212353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	183212354	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:69:60
chr1	183212355	.	C	.	.	PASS	END=183212401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr1	183212402	.	G	.	.	PASS	END=183212449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	183212450	.	T	.	.	PASS	END=183212520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	183212521	.	C	.	.	PASS	END=183212548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	183212549	.	A	.	.	PASS	END=183212552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	183212553	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:27:60
chr1	183212554	.	T	.	.	PASS	END=183212564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	183212565	.	T	.	.	PASS	END=183212568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr1	183212569	.	G	.	.	PASS	END=183212574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	183212575	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:30:60
chr1	183212576	.	A	.	.	PASS	END=183212578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	183212579	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:51:60
chr1	183212580	.	C	.	.	PASS	END=183212586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	183221774	.	T	.	.	LowGQX	END=183221880	GT	./.
chr1	183230121	.	C	.	.	LowGQX	END=183230220	GT	./.
chr1	183230335	.	A	.	.	LowGQX	END=183230437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183230438	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	183230439	.	C	.	.	LowGQX	END=183230440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183247677	.	T	.	.	LowGQX	END=183247776	GT	./.
chr1	183252981	.	T	.	.	LowGQX	END=183253176	GT	./.
chr1	183253836	.	G	.	.	LowGQX	END=183253853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183253854	.	T	.	.	LowGQX	.	GT	./.
chr1	183253855	.	G	.	.	LowGQX	END=183253910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183253911	.	T	.	.	LowGQX	END=183253935	GT	./.
chr1	183255795	.	A	.	.	LowGQX	END=183255925	GT	./.
chr1	183259253	.	C	.	.	LowGQX	END=183259352	GT	./.
chr1	183261849	.	A	.	.	LowGQX	END=183262062	GT	./.
chr1	183262835	.	C	.	.	LowGQX	END=183262934	GT	./.
chr1	183273790	.	G	.	.	LowGQX	END=183273889	GT	./.
chr1	183387311	.	G	.	.	LowGQX	END=183387318	GT	./.
chr1	183387319	.	A	.	.	LowGQX	END=183387324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183387325	.	C	.	.	LowGQX	.	GT	./.
chr1	183387326	.	T	.	.	LowGQX	END=183387328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183387329	.	A	.	.	LowGQX	.	GT	./.
chr1	183387330	.	T	.	.	LowGQX	END=183387333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183387334	.	C	.	.	LowGQX	.	GT	./.
chr1	183387335	.	C	.	.	LowGQX	END=183387340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183387341	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	183387342	.	T	.	.	LowGQX	END=183387346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183387347	.	G	.	.	LowGQX	.	GT	./.
chr1	183387348	.	G	.	.	LowGQX	END=183387354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183387355	.	G	.	.	LowGQX	.	GT	./.
chr1	183387356	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183387357	.	T	.	.	LowGQX	.	GT	./.
chr1	183387358	.	G	.	.	LowGQX	END=183387359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183387360	.	C	.	.	LowGQX	.	GT	./.
chr1	183387361	.	G	.	.	LowGQX	END=183387366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183387367	.	G	.	.	LowGQX	.	GT	./.
chr1	183387368	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183387369	.	G	.	.	LowGQX	.	GT	./.
chr1	183387370	.	C	.	.	LowGQX	END=183387374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183387375	.	T	.	.	LowGQX	END=183387376	GT	./.
chr1	183387377	.	A	.	.	LowGQX	END=183387378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183387379	.	G	.	.	LowGQX	END=183387380	GT	./.
chr1	183387381	.	G	.	.	LowGQX	END=183387383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183387384	.	T	.	.	LowGQX	.	GT	./.
chr1	183387385	.	C	.	.	LowGQX	END=183387392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183387393	.	T	.	.	LowGQX	.	GT	./.
chr1	183387394	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183387395	.	T	.	.	LowGQX	.	GT	./.
chr1	183387396	.	C	.	.	LowGQX	END=183387410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183441661	.	G	.	.	LowGQX	END=183441820	GT	./.
chr1	183471410	.	T	.	.	LowGQX	END=183471526	GT	./.
chr1	183481880	.	T	.	.	LowGQX	END=183482037	GT	./.
chr1	183485007	.	A	.	.	LowGQX	END=183485128	GT	./.
chr1	183486731	.	T	.	.	LowGQX	END=183486846	GT	./.
chr1	183486847	.	G	.	.	LowGQX	END=183486850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183486851	.	A	.	.	LowGQX	.	GT	./.
chr1	183486852	.	C	.	.	LowGQX	END=183486858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183486859	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	183486860	.	C	.	.	LowGQX	END=183486874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183486875	.	A	.	.	LowGQX	.	GT	./.
chr1	183486876	.	A	.	.	LowGQX	END=183486957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183495729	.	A	.	.	LowGQX	END=183495904	GT	./.
chr1	183496745	.	T	.	.	LowGQX	END=183496844	GT	./.
chr1	183497077	.	T	.	.	LowGQX	END=183497083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497084	.	T	.	.	LowGQX	.	GT	./.
chr1	183497085	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497086	.	C	.	.	LowGQX	END=183497087	GT	./.
chr1	183497088	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497089	.	A	.	.	LowGQX	.	GT	./.
chr1	183497090	.	G	.	.	LowGQX	END=183497091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497092	.	T	.	.	LowGQX	END=183497093	GT	./.
chr1	183497094	.	G	.	.	LowGQX	END=183497095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497096	.	T	.	.	LowGQX	END=183497097	GT	./.
chr1	183497098	.	C	.	.	LowGQX	END=183497101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497102	.	A	.	.	LowGQX	END=183497103	GT	./.
chr1	183497104	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497105	.	C	.	.	LowGQX	END=183497106	GT	./.
chr1	183497107	.	G	.	.	LowGQX	END=183497110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497111	.	A	.	.	LowGQX	.	GT	./.
chr1	183497112	.	G	.	.	LowGQX	END=183497115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497116	.	G	.	.	LowGQX	.	GT	./.
chr1	183497117	.	G	.	.	LowGQX	END=183497120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497121	.	A	.	.	LowGQX	.	GT	./.
chr1	183497122	.	G	.	.	LowGQX	END=183497129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497130	.	A	.	.	LowGQX	.	GT	./.
chr1	183497131	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497132	.	A	.	.	LowGQX	END=183497133	GT	./.
chr1	183497134	.	G	.	.	LowGQX	END=183497135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497136	.	A	.	.	LowGQX	.	GT	./.
chr1	183497137	.	T	.	.	LowGQX	END=183497138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497139	.	C	.	.	LowGQX	.	GT	./.
chr1	183497140	.	A	.	.	LowGQX	END=183497144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497145	.	A	.	.	LowGQX	.	GT	./.
chr1	183497146	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497147	.	C	.	.	LowGQX	.	GT	./.
chr1	183497148	.	T	.	.	LowGQX	END=183497150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497151	.	T	.	.	LowGQX	.	GT	./.
chr1	183497152	.	C	.	.	LowGQX	END=183497153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497154	.	C	.	.	LowGQX	.	GT	./.
chr1	183497155	.	C	.	.	LowGQX	END=183497156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497157	.	C	.	.	LowGQX	END=183497158	GT	./.
chr1	183497159	.	A	.	.	LowGQX	END=183497163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183497164	.	T	.	.	LowGQX	END=183497176	GT	./.
chr1	183498025	.	A	.	.	LowGQX	END=183498140	GT	./.
chr1	183498141	.	C	.	.	LowGQX	END=183498155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183498156	.	C	.	.	LowGQX	END=183498157	GT	./.
chr1	183498158	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183498159	.	T	.	.	LowGQX	.	GT	./.
chr1	183498160	.	T	.	.	LowGQX	END=183498178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183498179	.	T	.	.	LowGQX	.	GT	./.
chr1	183498531	.	A	.	.	LowGQX	END=183498670	GT	./.
chr1	183502297	.	A	.	.	LowGQX	END=183502309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183502310	.	C	.	.	LowGQX	.	GT	./.
chr1	183502311	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	183502312	.	A	.	.	LowGQX	.	GT	./.
chr1	183502313	.	A	.	.	LowGQX	END=183502314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	183502315	.	A	.	.	LowGQX	.	GT	./.
chr1	183502316	.	A	.	.	LowGQX	END=183502358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	183502359	.	C	.	.	LowGQX	.	GT	./.
chr1	183502360	.	T	.	.	LowGQX	END=183502376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	183502377	.	C	.	.	LowGQX	.	GT	./.
chr1	183502378	.	T	.	.	LowGQX	END=183502381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	183502382	.	T	.	.	LowGQX	.	GT	./.
chr1	183502383	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	183502384	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	183502385	.	C	.	.	LowGQX	END=183502397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	183502398	.	A	.	.	LowGQX	.	GT	./.
chr1	183502399	.	C	.	.	LowGQX	END=183502409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	183502410	.	A	.	.	LowGQX	.	GT	./.
chr1	183502411	.	C	.	.	LowGQX	END=183502432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183502433	.	A	.	.	LowGQX	.	GT	./.
chr1	183502434	.	T	.	.	LowGQX	END=183502444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183502445	.	G	.	.	LowGQX	.	GT	./.
chr1	183502446	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183502447	.	T	.	.	LowGQX	END=183502463	GT	./.
chr1	183502809	.	A	.	.	LowGQX	END=183502874	GT	./.
chr1	183502875	.	T	.	.	LowGQX	END=183502969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	183506266	.	T	.	.	LowGQX	END=183506365	GT	./.
chr1	183507496	.	T	.	.	LowGQX	END=183507595	GT	./.
chr1	183510117	.	A	.	.	LowGQX	END=183510240	GT	./.
chr1	183511209	.	A	.	.	LowGQX	END=183511228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183511229	.	T	.	.	LowGQX	END=183511631	GT	./.
chr1	183511632	.	G	.	.	LowGQX	END=183511639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183513486	.	A	.	.	LowGQX	END=183513634	GT	./.
chr1	183514063	.	A	.	.	LowGQX	END=183514449	GT	./.
chr1	183515099	.	A	.	.	LowGQX	END=183515100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183515101	.	T	.	.	LowGQX	.	GT	./.
chr1	183515102	.	A	.	.	LowGQX	END=183515103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183515104	.	C	.	.	LowGQX	.	GT	./.
chr1	183515105	.	A	.	.	LowGQX	END=183515115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183515116	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	183515117	.	C	.	.	LowGQX	END=183515122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183515123	.	A	.	.	LowGQX	.	GT	./.
chr1	183515124	.	A	.	.	LowGQX	END=183515127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183515128	.	C	.	.	LowGQX	.	GT	./.
chr1	183515129	.	T	.	.	LowGQX	END=183515153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183515154	.	C	.	.	LowGQX	END=183515155	GT	./.
chr1	183515156	.	C	.	.	LowGQX	END=183515164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183515165	.	A	.	.	LowGQX	.	GT	./.
chr1	183515166	.	A	.	.	LowGQX	END=183515171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183515172	.	G	.	.	LowGQX	.	GT	./.
chr1	183515173	.	C	.	.	LowGQX	END=183515194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183515195	.	T	.	.	LowGQX	.	GT	./.
chr1	183515196	.	T	.	.	LowGQX	END=183515223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	183515224	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	183515225	.	A	.	.	LowGQX	END=183515229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183515230	.	T	.	.	LowGQX	.	GT	./.
chr1	183515231	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183515232	.	A	.	.	LowGQX	.	GT	./.
chr1	183515233	.	T	.	.	LowGQX	END=183515249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183515250	.	G	.	.	LowGQX	END=183515251	GT	./.
chr1	183515252	.	A	.	.	LowGQX	END=183515258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183515259	.	G	.	.	LowGQX	.	GT	./.
chr1	183515260	.	C	.	.	LowGQX	END=183515291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183515292	.	G	.	.	LowGQX	.	GT	./.
chr1	183515293	.	G	.	.	LowGQX	END=183515295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183515296	.	C	.	.	LowGQX	.	GT	./.
chr1	183515297	.	C	.	.	LowGQX	END=183515325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183515326	.	G	.	.	LowGQX	END=183515474	GT	./.
chr1	183516237	.	G	.	.	LowGQX	END=183516387	GT	./.
chr1	183518334	.	A	.	.	LowGQX	END=183518433	GT	./.
chr1	183518897	.	A	.	.	LowGQX	END=183519032	GT	./.
chr1	183519033	.	G	.	.	LowGQX	END=183519037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183519038	.	C	.	.	LowGQX	.	GT	./.
chr1	183519039	.	A	.	.	LowGQX	END=183519042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183519043	.	C	.	.	LowGQX	.	GT	./.
chr1	183519044	.	T	.	.	LowGQX	END=183519050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183519051	.	C	.	.	LowGQX	.	GT	./.
chr1	183519052	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183519053	.	G	.	.	LowGQX	.	GT	./.
chr1	183519054	.	T	.	.	LowGQX	END=183519059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183519060	.	T	.	.	LowGQX	.	GT	./.
chr1	183519884	.	A	.	.	LowGQX	END=183520058	GT	./.
chr1	183520138	.	G	.	.	LowGQX	END=183520327	GT	./.
chr1	183520951	.	A	.	.	LowGQX	END=183521068	GT	./.
chr1	183522111	.	G	.	.	LowGQX	END=183522123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183522124	.	G	.	.	LowGQX	.	GT	./.
chr1	183522125	.	G	.	.	LowGQX	END=183522135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183522136	.	T	.	.	LowGQX	.	GT	./.
chr1	183522137	.	T	.	.	LowGQX	END=183522142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183522143	.	C	.	.	LowGQX	.	GT	./.
chr1	183522144	.	C	.	.	LowGQX	END=183522153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183522154	.	T	.	.	LowGQX	.	GT	./.
chr1	183522155	.	C	.	.	LowGQX	END=183522178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183522179	.	T	.	.	LowGQX	.	GT	./.
chr1	183522180	.	C	.	.	LowGQX	END=183522196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183522197	.	G	.	.	LowGQX	.	GT	./.
chr1	183522198	.	G	.	.	LowGQX	END=183522223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183522224	.	T	.	.	LowGQX	END=183522336	GT	./.
chr1	183525202	.	A	.	.	PASS	END=183525260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	183525261	.	C	.	.	PASS	END=183525320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	183525321	.	T	.	.	PASS	END=183525343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	183525344	.	C	.	.	PASS	END=183525400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	183525401	.	C	.	.	PASS	END=183525416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr1	183529180	.	T	.	.	PASS	END=183529181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	183529182	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:65:60
chr1	183529183	.	T	.	.	PASS	END=183529184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	183529185	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:55:60
chr1	183529186	.	T	.	.	PASS	END=183529211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	183529212	.	G	.	.	PASS	END=183529223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	183529224	.	C	.	.	PASS	END=183529246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	183529247	.	G	.	.	PASS	END=183529295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	183529296	.	T	.	.	PASS	END=183529376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	183529377	.	T	.	.	PASS	END=183529415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	183529416	.	A	.	.	PASS	END=183529459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	183532279	.	A	.	.	PASS	END=183532313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	183532314	.	C	.	.	PASS	END=183532326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	183532327	.	C	.	.	PASS	END=183532422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	183532423	.	G	.	.	PASS	END=183532492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	183532518	.	C	.	.	PASS	END=183532538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	183532539	.	A	.	.	PASS	END=183532717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr1	183532718	.	T	.	.	PASS	END=183532771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	183533083	.	A	.	.	PASS	END=183533099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	183533100	.	A	.	.	PASS	END=183533211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	183533212	.	A	.	.	PASS	END=183533216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	183534788	.	C	.	.	PASS	END=183534803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	183534804	.	A	.	.	PASS	END=183534943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	183534944	.	C	.	.	PASS	END=183534965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	183536004	.	G	.	.	PASS	END=183536024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	183536025	.	G	.	.	PASS	END=183536043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	183536044	.	C	.	.	PASS	END=183536052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	183536053	.	A	.	.	PASS	END=183536159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	183536160	.	T	.	.	PASS	END=183536174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	183536288	.	T	.	.	PASS	END=183536319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	183536320	.	C	.	.	PASS	END=183536354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	183536355	.	A	.	.	PASS	END=183536451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	183536452	.	G	.	.	PASS	END=183536476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	183536477	.	A	.	.	PASS	END=183536486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	183536487	.	A	.	.	PASS	END=183536498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:60
chr1	183536499	.	A	.	.	PASS	END=183536512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	183536513	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:75:60
chr1	183536514	.	C	.	.	PASS	END=183536519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	183536520	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:72:60
chr1	183536521	.	C	.	.	PASS	END=183536524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	183536525	.	A	.	.	PASS	END=183536542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	183536543	.	A	.	.	PASS	END=183536556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	183536557	.	C	.	.	PASS	END=183536579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	183536580	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr1	183536581	.	C	.	.	PASS	END=183536588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	183536589	.	A	.	.	PASS	END=183536592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	183536593	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:12:60
chr1	183536594	.	T	.	.	PASS	END=183536595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	183536596	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr1	183536597	.	C	.	.	PASS	END=183536598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	183536599	.	G	.	.	PASS	END=183536603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	183536604	.	T	.	.	PASS	END=183536612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	183536613	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:60
chr1	183536614	.	A	.	.	PASS	END=183536615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	183536616	.	A	.	.	PASS	END=183536632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	183536633	.	T	.	.	PASS	END=183536642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	183536643	.	T	.	.	PASS	END=183536645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	183538226	.	G	.	.	PASS	END=183538249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	183538250	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:55:60
chr1	183538251	.	T	.	.	PASS	END=183538284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	183538285	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:75:60
chr1	183538286	.	T	.	.	PASS	END=183538347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	183538348	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:45:60
chr1	183538349	.	G	.	.	PASS	END=183538371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:75:60
chr1	183539859	.	G	.	.	PASS	END=183539874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	183539875	.	T	.	.	PASS	END=183539881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:72:60
chr1	183539882	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:45:60
chr1	183539883	.	T	.	.	PASS	END=183539908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	183539909	.	C	.	.	PASS	END=183539974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:96:60
chr1	183539975	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:61:60
chr1	183539976	.	T	.	.	PASS	END=183539987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:90:60
chr1	183539988	.	C	.	.	PASS	END=183539989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:74:60
chr1	183539990	.	G	.	.	PASS	END=183540003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr1	183540004	.	T	.	.	PASS	END=183540008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:69:60
chr1	183540009	.	C	.	.	PASS	END=183540019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr1	183540020	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:48:60
chr1	183540021	.	C	.	.	PASS	END=183540025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr1	183542269	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:51:60
chr1	183542270	.	C	.	.	PASS	END=183542279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	183542280	.	G	.	.	PASS	END=183542287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	183542288	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:59:60
chr1	183542289	.	G	.	.	PASS	END=183542290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	183542291	.	C	.	.	PASS	END=183542307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:77:60
chr1	183542308	.	A	.	.	PASS	END=183542309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:74:60
chr1	183542310	.	T	.	.	PASS	END=183542360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:60
chr1	183542361	.	C	.	.	PASS	END=183542436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	183542437	.	A	.	.	PASS	END=183542470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	183542471	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:58:60
chr1	183542472	.	T	.	.	PASS	END=183542478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	183543571	.	A	.	.	PASS	END=183543592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	183543593	.	C	.	.	PASS	END=183543611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	183543612	.	A	.	.	PASS	END=183543670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	183543671	.	T	.	.	PASS	END=183543684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	183543685	.	C	.	.	PASS	END=183543753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	183543754	.	C	.	.	PASS	END=183543771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	183543772	.	C	.	.	PASS	END=183543807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	183546683	.	T	.	.	PASS	END=183546691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	183546692	.	C	.	.	PASS	END=183546701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	183546702	.	C	.	.	PASS	END=183546706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	183546707	.	G	.	.	PASS	END=183546717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	183546718	.	G	.	.	PASS	END=183546725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	183546726	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:69:60
chr1	183546727	.	T	.	.	PASS	END=183546746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:88:60
chr1	183546747	.	A	.	.	PASS	END=183546777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	183546778	.	C	.	.	PASS	END=183546872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	183546873	.	C	.	.	PASS	END=183546893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	183555979	.	C	.	.	PASS	END=183556013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	183556014	.	A	.	.	PASS	END=183556078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	183556079	.	A	.	.	PASS	END=183556118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	183556119	.	A	.	.	PASS	END=183556135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	183556136	.	T	.	.	PASS	END=183556154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	183556155	.	T	.	.	PASS	END=183556163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:90:60
chr1	183559240	.	T	.	.	PASS	END=183559483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	183559484	.	G	.	.	PASS	END=183559523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	183559524	.	G	.	.	PASS	END=183559554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	183559555	.	G	.	.	PASS	END=183559556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	183592549	.	G	.	.	LowGQX	END=183592648	GT	./.
chr1	183596649	.	A	.	.	LowGQX	END=183596748	GT	./.
chr1	183599594	.	A	.	.	LowGQX	END=183599610	GT	./.
chr1	183599611	.	C	.	.	LowGQX	END=183599647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183599648	.	A	.	.	LowGQX	.	GT	./.
chr1	183599649	.	A	.	.	LowGQX	END=183599676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183599677	.	A	.	.	LowGQX	.	GT	./.
chr1	183599678	.	T	.	.	LowGQX	END=183599693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183599694	.	C	.	.	LowGQX	.	GT	./.
chr1	183599695	.	C	.	.	LowGQX	END=183599774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183602155	.	C	.	.	LowGQX	END=183602306	GT	./.
chr1	183604650	.	A	.	.	LowGQX	END=183604796	GT	./.
chr1	183616811	.	T	.	.	LowGQX	END=183617918	GT	./.
chr1	183711291	.	A	.	.	LowGQX	END=183711426	GT	./.
chr1	183774395	.	A	.	.	LowGQX	END=183774494	GT	./.
chr1	183775507	.	A	.	.	LowGQX	END=183775611	GT	./.
chr1	183775612	.	G	.	.	LowGQX	END=183775621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183816698	.	A	.	.	LowGQX	END=183816910	GT	./.
chr1	183835119	.	T	.	.	LowGQX	END=183835145	GT	./.
chr1	183835146	.	A	.	.	LowGQX	END=183835168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183835169	.	A	.	.	LowGQX	.	GT	./.
chr1	183835170	.	A	.	.	LowGQX	END=183835199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183835200	.	A	.	.	LowGQX	.	GT	./.
chr1	183835201	.	T	.	.	LowGQX	END=183835218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183849748	.	A	.	.	LowGQX	END=183849936	GT	./.
chr1	183852918	.	A	.	.	LowGQX	END=183852936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183852937	.	A	.	.	LowGQX	.	GT	./.
chr1	183852938	.	T	.	.	LowGQX	END=183852996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183852997	.	T	.	.	LowGQX	.	GT	./.
chr1	183852998	.	G	.	.	LowGQX	END=183853012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183853013	.	T	.	.	LowGQX	.	GT	./.
chr1	183853014	.	C	.	.	LowGQX	END=183853038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183853039	.	G	.	.	LowGQX	END=183853046	GT	./.
chr1	183853855	.	A	.	.	LowGQX	END=183854074	GT	./.
chr1	183857606	.	A	.	.	LowGQX	END=183857610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	183857611	.	T	.	.	LowGQX	END=183857713	GT	./.
chr1	183861204	.	T	.	.	LowGQX	END=183861303	GT	./.
chr1	183866937	.	C	.	.	LowGQX	END=183867036	GT	./.
chr1	183869278	.	C	.	.	LowGQX	END=183869377	GT	./.
chr1	183871669	.	G	.	.	LowGQX	END=183871768	GT	./.
chr1	183873982	.	A	.	.	LowGQX	END=183874107	GT	./.
chr1	183876141	.	C	.	.	LowGQX	END=183876218	GT	./.
chr1	183876219	.	G	.	.	LowGQX	END=183876240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183881214	.	A	.	.	LowGQX	END=183881404	GT	./.
chr1	183885578	.	C	.	.	LowGQX	END=183885837	GT	./.
chr1	183891354	.	A	.	.	LowGQX	END=183891472	GT	./.
chr1	183895237	.	A	.	.	LowGQX	END=183895428	GT	./.
chr1	183899343	.	C	.	.	LowGQX	END=183899430	GT	./.
chr1	183899431	.	G	.	.	LowGQX	END=183899442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183907893	.	C	.	.	LowGQX	END=183908055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183908056	.	T	.	.	LowGQX	END=183908173	GT	./.
chr1	183909713	.	A	.	.	LowGQX	END=183909923	GT	./.
chr1	183913328	.	A	.	.	LowGQX	END=183913349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183913350	.	A	.	.	LowGQX	.	GT	./.
chr1	183913351	.	G	.	.	LowGQX	END=183913356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183913357	.	T	.	.	LowGQX	.	GT	./.
chr1	183913358	.	C	.	.	LowGQX	END=183913371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183913372	.	A	.	.	LowGQX	.	GT	./.
chr1	183913373	.	G	.	.	LowGQX	END=183913374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183913375	.	T	.	.	LowGQX	.	GT	./.
chr1	183913376	.	T	.	.	LowGQX	END=183913397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183913398	.	A	.	.	LowGQX	.	GT	./.
chr1	183913399	.	T	.	.	LowGQX	END=183913401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183913402	.	T	.	.	LowGQX	.	GT	./.
chr1	183913403	.	C	.	.	LowGQX	END=183913426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183913427	.	C	.	.	LowGQX	END=183913448	GT	./.
chr1	183913449	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183913450	.	T	.	.	LowGQX	.	GT	./.
chr1	183913451	.	C	.	.	LowGQX	END=183913454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183913455	.	T	.	.	LowGQX	.	GT	./.
chr1	183913456	.	A	.	.	LowGQX	END=183913459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183914564	.	A	.	.	LowGQX	END=183914697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183914698	.	C	.	.	LowGQX	END=183914700	GT	./.
chr1	183920139	.	A	.	.	LowGQX	END=183920214	GT	./.
chr1	183920215	.	G	.	.	LowGQX	END=183920249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183923885	.	A	.	.	LowGQX	END=183923984	GT	./.
chr1	183933033	.	A	.	.	LowGQX	END=183933074	GT	./.
chr1	183933075	.	T	.	.	LowGQX	END=183933124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183933125	.	G	.	.	LowGQX	.	GT	./.
chr1	183933126	.	C	.	.	LowGQX	END=183933197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	183938401	.	A	.	.	LowGQX	END=183938407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183938408	.	T	.	.	LowGQX	END=183938609	GT	./.
chr1	183942698	.	G	.	.	LowGQX	END=183942886	GT	./.
chr1	183944229	.	A	.	.	LowGQX	END=183944242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183944243	.	T	.	.	LowGQX	END=183944350	GT	./.
chr1	183947542	.	A	.	.	LowGQX	END=183947582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	183947583	.	A	.	.	LowGQX	END=183947656	GT	./.
chr1	184006217	.	G	.	.	LowGQX	END=184006493	GT	./.
chr1	184020888	.	G	.	.	LowGQX	END=184020961	GT	./.
chr1	184020962	.	G	.	.	LowGQX	END=184020986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184020987	.	G	.	.	LowGQX	.	GT	./.
chr1	184020988	.	G	.	.	LowGQX	END=184021016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184021017	.	A	.	.	LowGQX	.	GT	./.
chr1	184021018	.	C	.	.	LowGQX	END=184021026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184023479	.	A	.	.	LowGQX	END=184023578	GT	./.
chr1	184023860	.	A	.	.	LowGQX	END=184023999	GT	./.
chr1	184027247	.	T	.	.	LowGQX	END=184027346	GT	./.
chr1	184039729	.	T	.	.	LowGQX	END=184039828	GT	./.
chr1	184041289	.	A	.	.	LowGQX	END=184041323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184041324	.	G	.	.	LowGQX	.	GT	./.
chr1	184041325	.	C	.	.	LowGQX	END=184041333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184041334	.	C	.	.	LowGQX	.	GT	./.
chr1	184041335	.	C	.	.	LowGQX	END=184041343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184041344	.	C	.	.	LowGQX	.	GT	./.
chr1	184041345	.	G	.	.	LowGQX	END=184041350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184041351	.	T	.	.	LowGQX	.	GT	./.
chr1	184041352	.	T	.	.	LowGQX	END=184041359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184041360	.	G	.	.	LowGQX	.	GT	./.
chr1	184041361	.	G	.	.	LowGQX	END=184041362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184041363	.	C	.	.	LowGQX	.	GT	./.
chr1	184041364	.	A	.	.	LowGQX	END=184041376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184041377	.	A	.	.	LowGQX	.	GT	./.
chr1	184041378	.	T	.	.	LowGQX	END=184041393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184041394	.	T	.	.	LowGQX	END=184041434	GT	./.
chr1	184041869	.	T	.	.	LowGQX	END=184042028	GT	./.
chr1	184446641	.	A	.	.	LowGQX	END=184446740	GT	./.
chr1	184476660	.	C	.	.	LowGQX	END=184476819	GT	./.
chr1	184537527	.	C	.	.	LowGQX	END=184537554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184537555	.	T	.	.	LowGQX	END=184537626	GT	./.
chr1	184559862	.	A	.	.	LowGQX	END=184559961	GT	./.
chr1	184567516	.	A	.	.	LowGQX	END=184567615	GT	./.
chr1	184588570	.	G	.	.	LowGQX	END=184588721	GT	./.
chr1	184663195	.	A	.	.	LowGQX	END=184663608	GT	./.
chr1	184670605	.	A	.	.	LowGQX	END=184670704	GT	./.
chr1	184671943	.	A	.	.	LowGQX	END=184672132	GT	./.
chr1	184675775	.	A	.	.	LowGQX	END=184675806	GT	./.
chr1	184675807	.	T	.	.	LowGQX	END=184675944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184677274	.	T	.	.	LowGQX	END=184677453	GT	./.
chr1	184677454	.	C	.	.	LowGQX	END=184677463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184677464	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	184677465	.	A	.	.	LowGQX	END=184677504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184679526	.	A	.	.	LowGQX	END=184679652	GT	./.
chr1	184679653	.	G	.	.	LowGQX	END=184679683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184680855	.	A	.	.	LowGQX	.	GT	./.
chr1	184680856	.	C	.	.	LowGQX	END=184680871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184680872	.	C	.	.	LowGQX	.	GT	./.
chr1	184680873	.	T	.	.	LowGQX	END=184680876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184680877	.	A	.	.	LowGQX	END=184680948	GT	./.
chr1	184680949	.	G	.	.	LowGQX	END=184680951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184680952	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	184680953	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184680954	.	G	.	.	LowGQX	.	GT	./.
chr1	184680955	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184680956	.	G	.	.	LowGQX	.	GT	./.
chr1	184680957	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184680958	.	A	.	.	LowGQX	END=184680959	GT	./.
chr1	184680960	.	T	.	.	LowGQX	END=184680961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184680962	.	G	.	.	LowGQX	.	GT	./.
chr1	184680963	.	G	.	.	LowGQX	END=184680964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184680965	.	C	.	.	LowGQX	.	GT	./.
chr1	184680966	.	A	.	.	LowGQX	END=184680968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184680969	.	T	.	.	LowGQX	.	GT	./.
chr1	184680970	.	C	.	.	LowGQX	END=184680984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184680985	.	G	.	.	LowGQX	END=184680986	GT	./.
chr1	184680987	.	C	.	.	LowGQX	END=184680991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184680992	.	A	.	.	LowGQX	END=184680993	GT	./.
chr1	184680994	.	T	.	.	LowGQX	END=184680997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184680998	.	G	.	.	LowGQX	.	GT	./.
chr1	184680999	.	T	.	.	LowGQX	END=184681000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184681001	.	T	.	.	LowGQX	END=184681002	GT	./.
chr1	184681003	.	T	.	.	LowGQX	END=184681004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184681005	.	C	.	.	LowGQX	.	GT	./.
chr1	184681006	.	C	.	.	LowGQX	END=184681007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184681008	.	A	.	.	LowGQX	END=184681009	GT	./.
chr1	184681010	.	G	.	.	LowGQX	END=184681012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184681013	.	T	.	.	LowGQX	.	GT	./.
chr1	184681535	.	A	.	.	LowGQX	END=184681734	GT	./.
chr1	184686020	.	A	.	.	LowGQX	END=184686148	GT	./.
chr1	184686612	.	A	.	.	LowGQX	END=184686765	GT	./.
chr1	184688288	.	T	.	.	LowGQX	END=184688387	GT	./.
chr1	184688575	.	A	.	.	LowGQX	END=184688704	GT	./.
chr1	184690364	.	C	.	.	LowGQX	END=184690511	GT	./.
chr1	184690512	.	C	.	.	LowGQX	END=184690522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184692823	.	T	.	.	LowGQX	END=184692992	GT	./.
chr1	184695387	.	A	.	.	LowGQX	END=184695525	GT	./.
chr1	184701969	.	A	.	.	LowGQX	END=184702126	GT	./.
chr1	184703613	.	T	.	.	LowGQX	END=184703779	GT	./.
chr1	184706129	.	T	.	.	LowGQX	END=184706174	GT	./.
chr1	184706175	.	G	.	.	LowGQX	END=184706212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184706213	.	T	.	.	LowGQX	.	GT	./.
chr1	184706214	.	T	.	.	LowGQX	END=184706228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184706743	.	A	.	.	LowGQX	END=184706847	GT	./.
chr1	184718599	.	A	.	.	LowGQX	END=184718753	GT	./.
chr1	184723591	.	A	.	.	LowGQX	END=184723780	GT	./.
chr1	184760131	.	A	.	.	LowGQX	END=184760230	GT	./.
chr1	184764002	.	T	.	.	LowGQX	END=184764101	GT	./.
chr1	184764109	.	T	.	.	LowGQX	END=184764834	GT	./.
chr1	184764835	.	C	.	.	LowGQX	END=184764866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	184764867	.	C	.	.	LowGQX	.	GT	./.
chr1	184764868	.	G	.	.	LowGQX	END=184764886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	184764887	.	C	.	.	LowGQX	.	GT	./.
chr1	184764888	.	T	.	.	LowGQX	END=184764905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	184764906	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	184764907	.	A	.	.	LowGQX	END=184764912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	184764913	.	T	.	.	LowGQX	.	GT	./.
chr1	184764914	.	C	.	.	LowGQX	END=184764929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	184764930	.	A	.	.	LowGQX	.	GT	./.
chr1	184764931	.	A	.	.	LowGQX	END=184764944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	184764945	.	C	.	.	LowGQX	.	GT	./.
chr1	184764946	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	184764947	.	C	.	.	LowGQX	.	GT	./.
chr1	184764948	.	A	.	.	LowGQX	END=184764951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	184764952	.	G	.	.	LowGQX	.	GT	./.
chr1	184764953	.	G	.	.	LowGQX	END=184764958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	184764959	.	G	.	.	LowGQX	.	GT	./.
chr1	184764960	.	G	.	.	LowGQX	END=184764972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	184764973	.	A	.	.	LowGQX	END=184765233	GT	./.
chr1	184767211	.	A	.	.	LowGQX	END=184767326	GT	./.
chr1	184772717	.	A	.	.	LowGQX	END=184772731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184772732	.	G	.	.	LowGQX	.	GT	./.
chr1	184772733	.	A	.	.	LowGQX	END=184772828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184775047	.	T	.	.	LowGQX	END=184775192	GT	./.
chr1	184777124	.	C	.	.	LowGQX	END=184777371	GT	./.
chr1	184787770	.	A	.	.	LowGQX	END=184787887	GT	./.
chr1	184787888	.	C	.	.	LowGQX	END=184787892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184787893	.	A	.	.	LowGQX	.	GT	./.
chr1	184787894	.	G	.	.	LowGQX	END=184787954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184787955	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	184787956	.	A	.	.	LowGQX	END=184787961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	184792299	.	A	.	.	LowGQX	END=184792465	GT	./.
chr1	184792770	.	A	.	.	LowGQX	END=184792878	GT	./.
chr1	184800979	.	A	.	.	LowGQX	END=184801098	GT	./.
chr1	184853765	.	A	.	.	LowGQX	END=184853811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	184853812	.	T	.	.	LowGQX	END=184853936	GT	./.
chr1	184859240	.	A	.	.	LowGQX	END=184859358	GT	./.
chr1	184863207	.	A	.	.	LowGQX	END=184863342	GT	./.
chr1	184868310	.	A	.	.	LowGQX	END=184868444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184943352	.	C	.	.	LowGQX	END=184943495	GT	./.
chr1	184943496	.	A	.	.	LowGQX	END=184943517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184943518	.	A	.	.	LowGQX	.	GT	./.
chr1	184943519	.	A	.	.	LowGQX	END=184943561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184943562	.	G	.	.	LowGQX	.	GT	./.
chr1	184943563	.	A	.	.	LowGQX	END=184943565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184943566	.	G	.	.	LowGQX	.	GT	./.
chr1	184943567	.	C	.	.	LowGQX	END=184943568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	184943569	.	A	.	.	LowGQX	END=184943570	GT	./.
chr1	184943571	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185056680	.	C	.	.	LowGQX	END=185056779	GT	./.
chr1	185060709	.	A	.	.	LowGQX	END=185060859	GT	./.
chr1	185060860	.	C	.	.	LowGQX	END=185060873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	185062191	.	A	.	.	LowGQX	END=185062237	GT	./.
chr1	185062238	.	A	.	.	LowGQX	END=185062410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185067202	.	A	.	.	LowGQX	END=185067478	GT	./.
chr1	185068901	.	T	.	.	LowGQX	END=185069096	GT	./.
chr1	185069330	.	A	.	.	LowGQX	END=185069435	GT	./.
chr1	185089149	.	G	.	.	LowGQX	END=185089405	GT	./.
chr1	185089513	.	A	.	.	LowGQX	END=185089643	GT	./.
chr1	185092917	.	T	.	.	LowGQX	END=185093035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185093036	.	A	.	.	LowGQX	END=185093070	GT	./.
chr1	185094071	.	G	.	.	LowGQX	END=185094244	GT	./.
chr1	185097738	.	T	.	.	LowGQX	END=185097948	GT	./.
chr1	185106556	.	T	.	.	LowGQX	END=185106655	GT	./.
chr1	185106736	.	A	.	.	LowGQX	END=185106930	GT	./.
chr1	185108497	.	A	.	.	LowGQX	END=185108713	GT	./.
chr1	185109103	.	A	.	.	LowGQX	END=185109356	GT	./.
chr1	185112479	.	C	.	.	LowGQX	END=185112578	GT	./.
chr1	185113036	.	A	.	.	LowGQX	END=185113163	GT	./.
chr1	185114569	.	A	.	.	LowGQX	END=185114605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185114606	.	A	.	.	LowGQX	END=185114702	GT	./.
chr1	185116297	.	A	.	.	LowGQX	END=185116396	GT	./.
chr1	185119509	.	A	.	.	LowGQX	END=185119668	GT	./.
chr1	185120955	.	A	.	.	LowGQX	END=185121069	GT	./.
chr1	185125537	.	G	.	.	LowGQX	END=185125906	GT	./.
chr1	185129966	.	T	.	.	LowGQX	END=185130065	GT	./.
chr1	185135695	.	C	.	.	LowGQX	END=185135762	GT	./.
chr1	185135763	.	T	.	.	LowGQX	END=185135774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185135775	.	G	.	.	LowGQX	.	GT	./.
chr1	185135776	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185135777	.	G	.	.	LowGQX	.	GT	./.
chr1	185135778	.	A	.	.	LowGQX	END=185135780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185135781	.	A	.	.	LowGQX	.	GT	./.
chr1	185135782	.	C	.	.	LowGQX	END=185135784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185135785	.	G	.	.	LowGQX	END=185135787	GT	./.
chr1	185135788	.	A	.	.	LowGQX	END=185135794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185137400	.	T	.	.	LowGQX	END=185137404	GT	./.
chr1	185137405	.	A	.	.	LowGQX	END=185137460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185137461	.	A	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=7;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	185137462	.	T	.	.	LowGQX	END=185137477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185137478	.	G	.	.	LowGQX	.	GT	./.
chr1	185137479	.	A	.	.	LowGQX	END=185137491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185137492	.	T	.	.	LowGQX	.	GT	./.
chr1	185137493	.	C	.	.	LowGQX	END=185137499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185137500	.	A	.	.	LowGQX	.	GT	./.
chr1	185137501	.	T	.	.	LowGQX	END=185137502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185137503	.	A	.	.	LowGQX	.	GT	./.
chr1	185137504	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185137505	.	A	.	.	LowGQX	.	GT	./.
chr1	185137506	.	T	.	.	LowGQX	END=185137514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185137515	.	G	.	.	LowGQX	.	GT	./.
chr1	185137516	.	A	.	.	LowGQX	END=185137520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185137521	.	G	.	.	LowGQX	.	GT	./.
chr1	185137522	.	A	.	.	LowGQX	END=185137551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185143502	.	A	.	.	LowGQX	END=185143567	GT	./.
chr1	185143568	.	A	.	.	LowGQX	END=185143619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185143620	.	G	.	.	LowGQX	.	GT	./.
chr1	185143621	.	T	.	.	LowGQX	END=185143636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185143637	.	A	.	.	LowGQX	.	GT	./.
chr1	185143638	.	C	.	.	LowGQX	END=185143641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185143642	.	A	.	.	LowGQX	.	GT	./.
chr1	185143643	.	A	.	.	LowGQX	END=185143644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185143645	.	A	.	.	LowGQX	.	GT	./.
chr1	185143646	.	G	.	.	LowGQX	END=185143651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185143652	.	C	.	.	LowGQX	.	GT	./.
chr1	185143653	.	A	.	.	LowGQX	END=185143664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185143665	.	A	.	.	LowGQX	.	GT	./.
chr1	185143666	.	C	.	.	LowGQX	END=185143671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185143672	.	A	.	.	LowGQX	.	GT	./.
chr1	185143673	.	C	.	.	LowGQX	END=185143681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185143682	.	A	.	.	LowGQX	.	GT	./.
chr1	185143683	.	T	.	.	LowGQX	END=185143684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185143685	.	A	.	.	LowGQX	.	GT	./.
chr1	185143686	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185143687	.	A	.	.	LowGQX	.	GT	./.
chr1	185143688	.	T	.	.	LowGQX	END=185143693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185143694	.	A	.	.	LowGQX	.	GT	./.
chr1	185143695	.	A	.	.	LowGQX	END=185143697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185143698	.	C	.	.	LowGQX	.	GT	./.
chr1	185143699	.	T	.	.	LowGQX	END=185143700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185143701	.	G	.	.	LowGQX	.	GT	./.
chr1	185143702	.	G	.	.	LowGQX	END=185143706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185143707	.	A	.	.	LowGQX	.	GT	./.
chr1	185143708	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185143709	.	C	.	.	LowGQX	.	GT	./.
chr1	185143710	.	T	.	.	LowGQX	END=185143713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185143714	.	C	.	.	LowGQX	.	GT	./.
chr1	185143715	.	C	.	.	LowGQX	END=185143718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185143719	.	G	.	.	LowGQX	END=185143774	GT	./.
chr1	185143775	.	G	.	.	LowGQX	END=185144086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185144087	.	C	.	.	LowGQX	END=185144157	GT	./.
chr1	185144158	.	T	.	.	LowGQX	END=185144247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185149503	.	T	.	.	LowGQX	END=185149504	GT	./.
chr1	185149505	.	A	.	.	LowGQX	END=185149602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185151076	.	A	.	.	LowGQX	END=185151077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185151078	.	A	.	.	LowGQX	.	GT	./.
chr1	185151079	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185151080	.	G	.	.	LowGQX	.	GT	./.
chr1	185151081	.	C	.	.	LowGQX	END=185151083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185151084	.	A	.	.	LowGQX	.	GT	./.
chr1	185151085	.	T	.	.	LowGQX	END=185151099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185151100	.	A	.	.	LowGQX	.	GT	./.
chr1	185151101	.	T	.	.	LowGQX	END=185151102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185151103	.	C	.	.	LowGQX	.	GT	./.
chr1	185151104	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185151105	.	G	.	.	LowGQX	END=185151106	GT	./.
chr1	185151107	.	A	.	.	LowGQX	END=185151111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185151112	.	T	.	.	LowGQX	.	GT	./.
chr1	185151113	.	G	.	.	LowGQX	END=185151116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185151117	.	A	.	.	LowGQX	.	GT	./.
chr1	185151118	.	A	.	.	LowGQX	END=185151123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185151124	.	T	.	.	LowGQX	.	GT	./.
chr1	185151125	.	G	.	.	LowGQX	END=185151140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185151141	.	T	.	.	LowGQX	.	GT	./.
chr1	185151142	.	T	.	.	LowGQX	END=185151149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185151150	.	A	.	.	LowGQX	.	GT	./.
chr1	185151151	.	T	.	.	LowGQX	END=185151155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185151156	.	A	.	.	LowGQX	.	GT	./.
chr1	185151157	.	T	.	.	LowGQX	END=185151164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185151165	.	G	.	.	LowGQX	.	GT	./.
chr1	185151166	.	A	.	.	LowGQX	END=185151181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185151182	.	C	.	.	LowGQX	.	GT	./.
chr1	185151183	.	T	.	.	LowGQX	END=185151191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185153373	.	A	.	.	LowGQX	END=185153532	GT	./.
chr1	185153862	.	T	.	.	LowGQX	END=185154065	GT	./.
chr1	185159678	.	C	.	.	LowGQX	END=185159777	GT	./.
chr1	185171744	.	A	.	.	LowGQX	END=185171933	GT	./.
chr1	185173800	.	C	.	.	LowGQX	END=185173997	GT	./.
chr1	185175755	.	A	.	.	LowGQX	END=185175897	GT	./.
chr1	185183637	.	A	.	.	LowGQX	END=185183789	GT	./.
chr1	185190979	.	A	.	.	LowGQX	END=185191170	GT	./.
chr1	185200667	.	A	.	.	LowGQX	END=185200842	GT	./.
chr1	185240383	.	G	.	.	LowGQX	END=185240538	GT	./.
chr1	185245719	.	A	.	.	LowGQX	END=185245818	GT	./.
chr1	185259804	.	A	.	.	LowGQX	END=185259937	GT	./.
chr1	185267165	.	T	.	.	LowGQX	END=185267250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185267251	.	A	.	.	LowGQX	.	GT	./.
chr1	185267252	.	T	.	.	LowGQX	END=185267263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185267264	.	A	.	.	LowGQX	.	GT	./.
chr1	185267265	.	C	.	.	LowGQX	END=185267276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185267277	.	T	.	.	LowGQX	END=185267422	GT	./.
chr1	185268816	.	T	.	.	LowGQX	END=185268953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185268954	.	T	.	.	LowGQX	END=185269017	GT	./.
chr1	185269129	.	A	.	.	LowGQX	END=185269264	GT	./.
chr1	185269347	.	A	.	.	LowGQX	END=185269477	GT	./.
chr1	185269567	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	185269568	.	C	.	.	LowGQX	.	GT	./.
chr1	185269569	.	C	.	.	LowGQX	END=185269579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	185269580	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	185269581	.	C	.	.	LowGQX	END=185269591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	185269592	.	G	.	.	LowGQX	.	GT	./.
chr1	185269593	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	185269594	.	G	.	.	LowGQX	.	GT	./.
chr1	185269595	.	C	.	.	LowGQX	END=185269607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	185269608	.	C	.	.	LowGQX	.	GT	./.
chr1	185269609	.	A	.	.	LowGQX	END=185269623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	185269624	.	G	.	.	LowGQX	.	GT	./.
chr1	185269625	.	A	.	.	LowGQX	END=185269630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	185269631	.	G	.	.	LowGQX	.	GT	./.
chr1	185269632	.	A	.	.	LowGQX	END=185269634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	185269635	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	185269636	.	G	.	.	LowGQX	END=185269646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	185269647	.	A	.	.	LowGQX	.	GT	./.
chr1	185269648	.	T	.	.	LowGQX	END=185269666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	185269667	.	G	.	.	LowGQX	.	GT	./.
chr1	185269668	.	A	.	.	LowGQX	END=185269672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	185269673	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	185269674	.	C	.	.	LowGQX	END=185269683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185269684	.	T	.	.	LowGQX	END=185269692	GT	./.
chr1	185270102	.	A	.	.	LowGQX	END=185270330	GT	./.
chr1	185270564	.	A	.	.	LowGQX	END=185270575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270576	.	T	.	.	LowGQX	.	GT	./.
chr1	185270577	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270578	.	C	.	.	LowGQX	.	GT	./.
chr1	185270579	.	T	.	.	LowGQX	END=185270591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270592	.	T	.	.	LowGQX	.	GT	./.
chr1	185270593	.	T	.	.	LowGQX	END=185270594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270595	.	C	.	.	LowGQX	.	GT	./.
chr1	185270596	.	A	.	.	LowGQX	END=185270600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270601	.	T	.	.	LowGQX	END=185270607	GT	./.
chr1	185270608	.	G	.	.	LowGQX	END=185270609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270610	.	C	.	.	LowGQX	END=185270611	GT	./.
chr1	185270612	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270613	.	T	.	.	LowGQX	.	GT	./.
chr1	185270614	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270615	.	T	.	.	LowGQX	.	GT	./.
chr1	185270616	.	A	.	.	LowGQX	END=185270617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270618	.	T	.	.	LowGQX	END=185270620	GT	./.
chr1	185270621	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270622	.	G	.	.	LowGQX	.	GT	./.
chr1	185270623	.	C	.	.	LowGQX	END=185270627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270628	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	185270629	.	G	.	.	LowGQX	END=185270630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270631	.	G	.	.	LowGQX	END=185270632	GT	./.
chr1	185270633	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270634	.	G	.	.	LowGQX	.	GT	./.
chr1	185270635	.	A	.	.	LowGQX	END=185270636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270637	.	A	.	.	LowGQX	.	GT	./.
chr1	185270638	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270639	.	A	.	.	LowGQX	.	GT	./.
chr1	185270640	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270641	.	A	.	.	LowGQX	.	GT	./.
chr1	185270642	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270643	.	C	.	.	LowGQX	END=185270644	GT	./.
chr1	185270645	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270646	.	G	.	.	LowGQX	END=185270647	GT	./.
chr1	185270648	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270649	.	G	.	.	LowGQX	.	GT	./.
chr1	185270650	.	A	.	.	LowGQX	END=185270652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270653	.	T	.	.	LowGQX	.	GT	./.
chr1	185270654	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270655	.	C	.	.	LowGQX	.	GT	./.
chr1	185270656	.	T	.	.	LowGQX	END=185270657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270658	.	C	.	.	LowGQX	END=185270659	GT	./.
chr1	185270660	.	T	.	.	LowGQX	END=185270661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270662	.	T	.	.	LowGQX	.	GT	./.
chr1	185270663	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270664	.	T	.	.	LowGQX	.	GT	./.
chr1	185270665	.	G	.	.	LowGQX	END=185270668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270669	.	A	.	.	LowGQX	.	GT	./.
chr1	185270670	.	T	.	.	LowGQX	END=185270671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270672	.	G	.	.	LowGQX	.	GT	./.
chr1	185270673	.	C	.	.	LowGQX	END=185270676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270677	.	T	.	.	LowGQX	.	GT	./.
chr1	185270678	.	C	.	.	LowGQX	END=185270679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270680	.	C	.	.	LowGQX	END=185270685	GT	./.
chr1	185270686	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270687	.	T	.	.	LowGQX	END=185270688	GT	./.
chr1	185270689	.	G	.	.	LowGQX	END=185270691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270692	.	T	.	.	LowGQX	.	GT	./.
chr1	185270693	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270694	.	T	.	.	LowGQX	.	GT	./.
chr1	185270695	.	T	.	.	LowGQX	END=185270696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185270697	.	T	.	.	LowGQX	.	GT	./.
chr1	185274666	.	A	.	.	LowGQX	END=185274777	GT	./.
chr1	185275568	.	T	.	.	LowGQX	END=185275601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185275602	.	T	.	.	LowGQX	END=185275667	GT	./.
chr1	185276095	.	T	.	.	LowGQX	END=185276294	GT	./.
chr1	185276619	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276620	.	C	.	.	LowGQX	END=185276621	GT	./.
chr1	185276622	.	T	.	.	LowGQX	END=185276624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276625	.	A	.	.	LowGQX	END=185276626	GT	./.
chr1	185276627	.	C	.	.	LowGQX	END=185276628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276629	.	T	.	.	LowGQX	.	GT	./.
chr1	185276630	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276631	.	G	.	.	LowGQX	END=185276633	GT	./.
chr1	185276634	.	A	.	.	LowGQX	END=185276635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276636	.	C	.	.	LowGQX	.	GT	./.
chr1	185276637	.	T	.	.	LowGQX	END=185276638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276639	.	A	.	.	LowGQX	.	GT	./.
chr1	185276640	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276641	.	G	.	.	LowGQX	END=185276642	GT	./.
chr1	185276643	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276644	.	A	.	.	LowGQX	END=185276645	GT	./.
chr1	185276646	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276647	.	C	.	.	LowGQX	END=185276648	GT	./.
chr1	185276649	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276650	.	C	.	.	LowGQX	END=185276651	GT	./.
chr1	185276652	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276653	.	C	.	.	LowGQX	.	GT	./.
chr1	185276654	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276655	.	T	.	.	LowGQX	.	GT	./.
chr1	185276656	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276657	.	A	.	.	LowGQX	END=185276658	GT	./.
chr1	185276659	.	A	.	.	LowGQX	END=185276660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276661	.	A	.	.	LowGQX	.	GT	./.
chr1	185276662	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276663	.	T	.	.	LowGQX	END=185276665	GT	./.
chr1	185276666	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276667	.	A	.	.	LowGQX	.	GT	./.
chr1	185276668	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276669	.	C	.	.	LowGQX	.	GT	./.
chr1	185276670	.	A	.	.	LowGQX	END=185276672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276673	.	T	.	.	LowGQX	.	GT	./.
chr1	185276674	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276675	.	C	.	.	LowGQX	.	GT	./.
chr1	185276676	.	T	.	.	LowGQX	END=185276681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276682	.	A	.	.	LowGQX	.	GT	./.
chr1	185276683	.	T	.	.	LowGQX	END=185276685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276686	.	A	.	.	LowGQX	.	GT	./.
chr1	185276687	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276688	.	G	.	.	LowGQX	END=185276689	GT	./.
chr1	185276690	.	A	.	.	LowGQX	END=185276693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276694	.	A	.	.	LowGQX	END=185276695	GT	./.
chr1	185276696	.	C	.	.	LowGQX	END=185276697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276698	.	T	.	.	LowGQX	.	GT	./.
chr1	185276699	.	A	.	.	LowGQX	END=185276704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276705	.	C	.	.	LowGQX	.	GT	./.
chr1	185276706	.	A	.	.	LowGQX	END=185276709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276710	.	G	.	.	LowGQX	END=185276711	GT	./.
chr1	185276712	.	G	.	.	LowGQX	END=185276713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276714	.	G	.	.	LowGQX	END=185276715	GT	./.
chr1	185276716	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276717	.	T	.	.	LowGQX	END=185276718	GT	./.
chr1	185276719	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276720	.	C	.	.	LowGQX	.	GT	./.
chr1	185276721	.	A	.	.	LowGQX	END=185276722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276723	.	A	.	.	LowGQX	END=185276724	GT	./.
chr1	185276725	.	A	.	.	LowGQX	END=185276727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276728	.	T	.	.	LowGQX	.	GT	./.
chr1	185276729	.	T	.	.	LowGQX	END=185276730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276731	.	C	.	.	LowGQX	.	GT	./.
chr1	185276732	.	A	.	.	LowGQX	END=185276734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276735	.	A	.	.	LowGQX	END=185276760	GT	./.
chr1	185276761	.	C	.	.	LowGQX	END=185276768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	185276769	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	185276770	.	T	.	.	LowGQX	END=185276796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	185277074	.	T	.	.	LowGQX	END=185277173	GT	./.
chr1	185277920	.	C	.	.	LowGQX	END=185278019	GT	./.
chr1	185278133	.	A	.	.	LowGQX	END=185278306	GT	./.
chr1	185278513	.	A	.	.	LowGQX	END=185278682	GT	./.
chr1	185703861	.	G	.	.	PASS	END=185703912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	185703913	.	T	.	.	PASS	END=185703927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	185703928	.	T	.	.	PASS	END=185703955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	185703956	.	T	.	.	PASS	END=185704009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	185704010	.	G	.	.	PASS	END=185704073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	185704074	.	G	.	.	PASS	END=185704096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	185704097	.	G	.	.	PASS	END=185704129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	185704130	.	A	.	.	PASS	END=185704174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	185704175	.	T	.	.	PASS	END=185704182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	185704183	.	A	.	.	PASS	END=185704204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	185704205	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:36:60
chr1	185704206	.	T	.	.	PASS	END=185704222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	185704223	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:27:60
chr1	185704224	.	A	.	.	PASS	END=185704226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	185704227	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:30:60
chr1	185704228	.	T	.	.	PASS	END=185704230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	185815107	.	T	.	.	PASS	END=185815170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	185815171	.	G	.	.	PASS	END=185815225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	185815226	.	C	.	.	PASS	END=185815260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr1	185815261	.	A	.	.	PASS	END=185815276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	185815277	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:48:60
chr1	185815278	.	C	.	.	PASS	END=185815279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	185833551	.	T	.	.	PASS	END=185833558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	185833559	.	T	.	.	PASS	END=185833564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	185833565	.	A	C	256.83	PASS	BaseQRankSum=-1.981;DP=28;Dels=0.00;FS=3.488;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.415;QD=9.17;ReadPosRankSum=-1.244;SB=-152.18	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:15,13:28:99:287,0,479:60:99:0.464
chr1	185833566	.	T	.	.	PASS	END=185833576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	185833577	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:47:60
chr1	185833578	.	T	.	.	PASS	END=185833592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	185833593	.	A	.	.	PASS	END=185833614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	185833615	.	G	.	.	PASS	END=185833708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:88:60
chr1	185833709	.	T	.	.	PASS	END=185833729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	185833730	.	G	.	.	PASS	END=185833747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	185833748	.	G	.	.	PASS	END=185833751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	185833752	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:30:60
chr1	185833753	.	A	.	.	PASS	END=185833754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	185833755	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:30:60
chr1	185833756	.	C	.	.	PASS	END=185833762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	185833763	.	G	.	.	PASS	END=185833772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	185833773	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:12:60
chr1	185833774	.	A	.	.	PASS	END=185833795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	185833796	.	A	.	.	PASS	END=185833798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	185833799	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:57:60
chr1	185833800	.	A	.	.	PASS	END=185833811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	185834822	.	T	.	.	PASS	END=185834847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:95:60
chr1	185834847	.	GTTTC	G	1252.90	PASS	BaseQRankSum=-1.692;DP=57;FS=9.954;HRun=0;HaplotypeScore=332.0739;MQ=60;MQ0=0;MQRankSum=-0.985;QD=21.98;ReadPosRankSum=1.288;SB=-146.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,16:57:99:1292,0,1371:60:99:0.320
chr1	185834848	.	T	.	96.21	PASS	DP=57;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:33:33:66.21:60:66
chr1	185834849	.	T	.	96.21	PASS	DP=57;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:31:32:66.22:60:66
chr1	185834850	.	T	.	96.21	PASS	DP=57;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:33:33:66.21:60:66
chr1	185834851	.	C	T	.	LowQD;SiteConflict;LowGQX	BaseQRankSum=0.606;DP=55;Dels=0.44;FS=0.000;HRun=13;HaplotypeScore=121.5384;MQ=60;MQ0=0;MQRankSum=-0.318;QD=0.61;ReadPosRankSum=-1.703;SB=-0.01	GT:AD:DP:MQ	.:24,5:31:60
chr1	185834852	.	T	.	126.30	PASS	DP=57;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:45:45:96.31:60:96
chr1	185834853	.	T	.	.	PASS	END=185834867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:90:60
chr1	185834868	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:57:3:60
chr1	185834869	.	A	.	.	PASS	END=185834874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:84:60
chr1	185834875	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:72:60
chr1	185834876	.	G	.	.	PASS	END=185834886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:87:60
chr1	185834887	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:71:60
chr1	185834888	.	A	.	.	PASS	END=185834954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	185834955	.	C	.	.	PASS	END=185835027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:86:60
chr1	185835028	.	C	.	.	PASS	END=185835039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	185835040	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:51:60
chr1	185835041	.	A	.	.	PASS	END=185835046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	185878418	.	A	.	.	PASS	END=185878451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	185878452	.	C	.	.	PASS	END=185878562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	185878563	.	C	.	.	PASS	END=185878602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	185878603	.	T	.	.	PASS	END=185878642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	185878643	.	G	.	.	PASS	END=185878654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	185878655	.	A	.	.	PASS	END=185878685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	185878686	.	G	.	.	PASS	END=185878691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	185880755	.	A	.	.	PASS	END=185880764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	185880765	.	G	.	.	PASS	END=185880776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	185880777	.	G	.	.	PASS	END=185880821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:78:60
chr1	185880822	.	G	.	.	PASS	END=185880868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	185880869	.	T	.	.	PASS	END=185880915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	185880916	.	C	.	.	PASS	END=185880935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:87:60
chr1	185880936	.	T	.	.	PASS	END=185880963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	185891460	.	A	.	.	PASS	END=185891474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	185891475	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:60:60
chr1	185891476	.	A	.	.	PASS	END=185891483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	185891484	.	A	.	.	PASS	END=185891511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:79:60
chr1	185891512	.	C	.	.	PASS	END=185891548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	185891549	.	C	.	.	PASS	END=185891625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	185891626	.	T	.	.	PASS	END=185891638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	185891639	.	T	.	.	PASS	END=185891648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	185891649	.	A	.	.	PASS	END=185891670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	185891671	.	T	.	.	PASS	END=185891682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	185892471	.	A	.	.	PASS	END=185892490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	185892491	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:48:60
chr1	185892492	.	G	.	.	PASS	END=185892495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	185892496	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:69:60
chr1	185892497	.	T	.	.	PASS	END=185892518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	185892519	.	T	.	.	PASS	END=185892526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	185892527	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:54:60
chr1	185892528	.	C	.	.	PASS	END=185892530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	185892531	.	C	.	.	PASS	END=185892567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	185892568	.	A	.	.	PASS	END=185892600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	185892601	.	C	.	.	PASS	END=185892681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	185892682	.	T	.	.	PASS	END=185892737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	185892738	.	A	.	.	PASS	END=185892752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	185892753	.	T	.	.	PASS	END=185892787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	185892788	.	G	.	.	PASS	END=185892817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	185892818	.	T	.	.	PASS	END=185892836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	185894128	.	T	.	.	PASS	END=185894134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	185894135	.	T	.	.	PASS	END=185894181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	185894182	.	C	.	.	PASS	END=185894202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	185894203	.	A	.	.	PASS	END=185894215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	185894216	.	A	.	.	PASS	END=185894257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	185894258	.	T	.	.	PASS	END=185894283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	185894284	.	T	.	.	PASS	END=185894294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	185894295	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:43:60
chr1	185894296	.	T	.	.	PASS	END=185894325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	185894326	.	A	.	.	PASS	END=185894337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	185894338	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:36:60
chr1	185894339	.	T	.	.	PASS	END=185894365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	185894366	.	A	.	.	PASS	END=185894374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	185897627	.	A	.	.	PASS	END=185897688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	185897689	.	G	.	.	PASS	END=185897700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	185897701	.	A	.	.	PASS	END=185897795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	185897796	.	T	.	.	PASS	END=185897850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	185902630	.	G	.	.	PASS	END=185902695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	185902696	.	T	.	.	PASS	END=185902714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	185902715	.	T	.	.	PASS	END=185902724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	185902725	.	C	.	.	PASS	END=185902749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	185902750	.	G	.	.	PASS	END=185902763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	185902764	.	G	.	.	PASS	END=185902812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	185902813	.	T	.	.	PASS	END=185902873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	185902874	.	A	.	.	PASS	END=185902898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	185902899	.	T	.	.	PASS	END=185902908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	185902909	.	C	.	.	PASS	END=185902940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	185902941	.	T	.	.	PASS	END=185902958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	185902959	.	A	.	.	PASS	END=185902965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	185902966	.	T	.	.	PASS	END=185902984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:69:60
chr1	185902985	.	T	.	.	PASS	END=185903007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	185931599	.	A	.	.	PASS	END=185931638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	185931639	.	T	.	.	PASS	END=185931649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	185931650	.	A	.	.	PASS	END=185931713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:78:60
chr1	185931714	.	C	.	.	PASS	END=185931766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	185931767	.	A	.	.	PASS	END=185931799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	185931800	.	T	.	.	PASS	END=185931842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	185932849	.	T	.	.	PASS	END=185932875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	185932876	.	A	.	.	PASS	END=185932898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	185932899	.	G	.	.	PASS	END=185932909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	185932910	.	A	.	.	PASS	END=185932944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	185932945	.	T	.	.	PASS	END=185933049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	185933050	.	G	.	.	PASS	END=185933076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	185933077	.	C	.	.	PASS	END=185933078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	185934883	.	C	.	.	PASS	END=185934930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	185934931	.	C	.	.	PASS	END=185934991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	185934992	.	C	.	.	PASS	END=185935023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	185935024	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:57:60
chr1	185935025	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:93:60
chr1	185935026	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:66:60
chr1	185935027	.	C	.	.	PASS	END=185935048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	185935049	.	T	.	.	PASS	END=185935056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	185935057	.	T	.	.	PASS	END=185935080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	185935081	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:0:60
chr1	185935082	.	T	.	.	PASS	END=185935083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	185935084	.	A	.	.	PASS	END=185935090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	185935091	.	T	.	.	PASS	END=185935098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	185939416	.	A	.	.	PASS	END=185939422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	185939423	.	T	.	.	PASS	END=185939445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	185939446	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:59:60
chr1	185939447	.	T	.	.	PASS	END=185939449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	185939450	.	C	.	.	PASS	END=185939452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:69:60
chr1	185939453	.	T	.	.	PASS	END=185939510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	185939511	.	C	.	.	PASS	END=185939571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	185939572	.	T	.	.	PASS	END=185939594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	185939595	.	G	.	.	PASS	END=185939621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	185939622	.	G	.	.	PASS	END=185939629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	185939630	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:33:60
chr1	185939631	.	C	.	.	PASS	END=185939639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	185939640	.	C	.	.	PASS	END=185939652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	185939653	.	T	.	.	PASS	END=185939661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	185939662	.	A	.	.	PASS	END=185939674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	185939675	.	T	.	.	PASS	END=185939676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	185946868	.	A	.	.	PASS	END=185946873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	185946874	.	G	.	.	PASS	END=185946880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	185946881	.	A	.	.	PASS	END=185946918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:78:60
chr1	185946919	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:68:64:60
chr1	185946920	.	A	.	.	PASS	END=185946983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	185946984	.	C	.	.	PASS	END=185947018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	185947019	.	C	.	.	PASS	END=185947040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	185947041	.	A	.	.	PASS	END=185947086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	185947087	.	T	.	.	PASS	END=185947125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	185947126	.	A	.	.	PASS	END=185947135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	185947136	.	T	.	.	PASS	END=185947154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr1	185947155	.	A	.	.	PASS	END=185947164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	185950059	.	G	.	.	PASS	END=185950073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	185950074	.	A	.	.	PASS	END=185950082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	185950083	.	G	.	.	PASS	END=185950121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	185950122	.	G	.	.	PASS	END=185950193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	185950194	.	T	.	.	PASS	END=185950223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	185950224	.	C	.	.	PASS	END=185950231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	185950232	.	C	.	.	PASS	END=185950236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	185950237	.	T	.	.	PASS	END=185950247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	185950248	.	A	.	.	PASS	END=185950256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	185951343	.	T	.	.	PASS	END=185951381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	185951382	.	C	.	.	PASS	END=185951419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	185951420	.	T	.	.	PASS	END=185951471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	185951472	.	T	.	.	PASS	END=185951525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	185951526	.	G	.	123.29	PASS	DP=64;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:51:64:93.30:60:93
chr1	185951527	.	A	.	.	PASS	END=185951528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	185951529	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:44:60
chr1	185951530	.	A	.	.	PASS	END=185951549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:78:60
chr1	185951550	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:69:60
chr1	185951551	.	A	.	.	PASS	END=185951553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	185951554	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:63:60
chr1	185951555	.	T	.	.	PASS	END=185951560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:81:60
chr1	185951561	.	G	.	.	PASS	END=185951563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:60:60
chr1	185951564	.	T	.	.	PASS	END=185951567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	185951568	.	C	.	75.09	PASS	DP=49;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:35:48:45.09:60:45
chr1	185951569	.	T	.	.	PASS	END=185951572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	185953250	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	185953251	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	185953252	.	C	.	.	PASS	END=185953259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	185953260	.	C	.	.	PASS	END=185953282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	185953283	.	C	.	.	PASS	END=185953291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	185953292	.	T	.	.	PASS	END=185953293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	185953294	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr1	185953295	.	T	.	.	PASS	END=185953307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	185953308	.	A	.	.	PASS	END=185953316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	185953317	.	A	.	.	PASS	END=185953324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	185953325	.	G	.	.	PASS	END=185953331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	185953332	.	G	.	.	PASS	END=185953362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	185953363	.	G	.	.	PASS	END=185953400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	185953401	.	A	.	.	PASS	END=185953467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	185953468	.	T	.	.	PASS	END=185953479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	185953480	.	T	.	.	PASS	END=185953496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	185956513	.	T	.	.	PASS	END=185956525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	185956526	.	A	.	.	PASS	END=185956528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	185956529	.	G	.	.	PASS	END=185956532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	185956533	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:42:60
chr1	185956534	.	T	.	.	PASS	END=185956550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	185956551	.	C	.	.	PASS	END=185956555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	185956556	.	C	.	.	PASS	END=185956568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	185956569	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:30:60
chr1	185956570	.	C	.	.	PASS	END=185956579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	185956580	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:63:60
chr1	185956581	.	C	.	.	PASS	END=185956592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	185956593	.	A	.	.	PASS	END=185956602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	185956603	.	C	.	.	PASS	END=185956620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	185956621	.	T	.	.	PASS	END=185956727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	185958569	.	T	.	.	PASS	END=185958620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	185958621	.	A	.	.	PASS	END=185958689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	185958690	.	C	.	.	PASS	END=185958709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	185958710	.	G	.	.	PASS	END=185958726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	185958727	.	T	.	.	PASS	END=185958778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	185958779	.	G	.	.	PASS	END=185958787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	185958788	.	T	.	.	PASS	END=185958801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	185958802	.	T	.	.	PASS	END=185958813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:60:60
chr1	185958814	.	T	.	.	PASS	END=185958823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	185958824	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:42:60
chr1	185958825	.	T	.	.	LowGQX	END=185958827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	185958828	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr1	185958829	.	A	.	.	LowGQX	END=185958830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	185959356	.	T	.	.	PASS	END=185959362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	185959363	.	T	.	.	PASS	END=185959381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	185959382	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:12:60
chr1	185959383	.	T	.	.	PASS	END=185959409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	185959410	.	G	.	.	PASS	END=185959419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	185959420	.	G	.	.	PASS	END=185959431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	185959432	.	A	.	.	PASS	END=185959440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	185959441	.	G	.	.	PASS	END=185959493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	185959494	.	T	.	.	PASS	END=185959559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	185959560	.	C	.	.	PASS	END=185959576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	185959577	.	T	.	.	PASS	END=185959591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	185959592	.	G	.	.	PASS	END=185959626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	185962263	.	A	.	.	PASS	END=185962280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	185962281	.	T	.	.	PASS	END=185962293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	185962294	.	A	.	.	PASS	END=185962329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	185962330	.	T	.	.	PASS	END=185962429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	185962430	.	T	.	.	PASS	END=185962436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	185962437	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:70:66:60
chr1	185962438	.	C	.	.	PASS	END=185962465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	185962466	.	G	.	.	PASS	END=185962473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	185962474	.	T	.	.	PASS	END=185962480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	185962481	.	T	.	.	PASS	END=185962496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	185963896	.	A	.	.	PASS	END=185963921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	185963922	.	A	.	.	PASS	END=185963929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	185963930	.	C	.	.	PASS	END=185963932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	185963933	.	G	.	.	PASS	END=185963948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	185963949	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:51:60
chr1	185963950	.	C	.	.	PASS	END=185963963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	185963964	.	C	.	.	PASS	END=185963970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	185963971	.	C	.	.	PASS	END=185963993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	185963994	.	G	.	.	PASS	END=185964009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	185964010	.	T	.	.	PASS	END=185964032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	185964033	.	C	.	.	PASS	END=185964066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	185964067	.	G	.	.	PASS	END=185964163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	185964164	.	T	.	.	PASS	END=185964187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	185964188	.	T	.	.	PASS	END=185964215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	185964216	.	C	.	.	PASS	END=185964225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	185964226	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:99:60
chr1	185964227	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:60:60
chr1	185964228	.	T	.	.	PASS	END=185964244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	185964245	.	T	.	.	PASS	END=185964255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr1	185964256	.	T	.	.	PASS	END=185964259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	185964260	.	G	.	.	PASS	END=185964261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	185964262	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:69:60
chr1	185964263	.	T	.	.	PASS	END=185964270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	185966510	.	T	.	.	PASS	END=185966530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	185966531	.	C	.	.	PASS	END=185966568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	185966569	.	A	.	.	PASS	END=185966585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	185966586	.	A	.	.	PASS	END=185966667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	185966668	.	T	.	.	PASS	END=185966693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	185966694	.	T	.	.	PASS	END=185966707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	185969126	.	T	.	.	PASS	END=185969145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	185969146	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	185969147	.	A	.	.	PASS	END=185969150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	185969151	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	185969152	.	C	.	.	PASS	END=185969158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	185969159	.	C	.	.	LowGQX	END=185969160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	185969161	.	T	.	.	PASS	END=185969166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	185969167	.	T	.	.	LowGQX	END=185969169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	185969170	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	185969171	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	185969172	.	T	.	.	PASS	END=185969173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	185969174	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	185969175	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	185969176	.	G	.	.	LowGQX	END=185969179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	185969180	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:36:60
chr1	185969181	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:8:60
chr1	185969182	.	C	.	.	PASS	END=185969192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	185969193	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:3:60
chr1	185969194	.	A	.	.	PASS	END=185969209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	185969210	.	A	.	.	PASS	END=185969227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	185969228	.	G	.	.	PASS	END=185969252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	185969253	.	G	.	.	PASS	END=185969281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	185969282	.	C	.	.	PASS	END=185969291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	185969292	.	C	.	.	PASS	END=185969304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	185969305	.	G	.	.	PASS	END=185969388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	185969389	.	C	.	.	PASS	END=185969422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	185970379	.	A	.	.	PASS	END=185970396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	185970397	.	A	.	.	PASS	END=185970464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:97:60
chr1	185970465	.	A	.	.	PASS	END=185970540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	185970541	.	G	.	.	PASS	END=185970611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	185970675	.	A	.	.	PASS	END=185970717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	185970718	.	C	.	.	PASS	END=185970843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	185970844	.	C	.	.	PASS	END=185970862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	185970863	.	T	.	.	PASS	END=185970892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	185970893	.	A	.	.	PASS	END=185970914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	185970915	.	T	.	.	PASS	END=185970924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	185972799	.	T	.	.	PASS	END=185972801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	185972802	.	T	.	.	PASS	END=185972804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	185972805	.	T	.	.	PASS	END=185972823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	185972824	.	T	.	.	PASS	END=185972832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	185972833	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:24:60
chr1	185972834	.	A	.	.	PASS	END=185972852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	185972853	.	C	.	.	PASS	END=185972858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	185972859	.	C	.	.	PASS	END=185972929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:86:60
chr1	185972930	.	G	.	.	PASS	END=185973006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	185973007	.	T	.	.	PASS	END=185973014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	185973015	.	A	.	.	PASS	END=185973027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	185976209	.	A	.	.	PASS	END=185976290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	185976291	.	C	.	.	PASS	END=185976361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	185976362	.	T	.	.	PASS	END=185976373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	185976374	.	A	.	.	PASS	END=185976416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	185976417	.	A	.	.	PASS	END=185976441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	185976442	.	T	.	.	PASS	END=185976450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	185976451	.	C	.	.	PASS	END=185976465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	185984240	.	T	.	.	LowGQX	END=185984266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	185984267	.	T	.	.	PASS	END=185984272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	185984273	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	185984274	.	T	.	.	PASS	END=185984278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	185984279	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	185984280	.	A	.	.	PASS	END=185984283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	185984284	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	185984285	.	T	.	.	PASS	END=185984294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	185984295	.	A	.	.	PASS	END=185984296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	185984297	.	C	.	.	PASS	END=185984299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	185984300	.	G	.	.	PASS	END=185984319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	185984320	.	A	.	.	PASS	END=185984329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	185984330	.	T	.	.	PASS	END=185984347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	185984348	.	G	.	.	PASS	END=185984372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	185984373	.	A	.	.	PASS	END=185984402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr1	185984403	.	G	.	.	PASS	END=185984490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:93:60
chr1	185984491	.	T	.	.	PASS	END=185984514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	185984515	.	C	.	.	PASS	END=185984516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	185984517	.	T	C	393.51	PASS	BaseQRankSum=-1.702;DP=43;Dels=0.00;FS=4.566;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=-0.460;QD=9.15;ReadPosRankSum=-0.857;SB=-164.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,17:43:99:424,0,616:60:99:0.395
chr1	185984518	.	G	.	.	PASS	END=185984521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	185984522	.	C	.	.	PASS	END=185984536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr1	185984537	.	C	.	.	PASS	END=185984552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	185984553	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:60:60
chr1	185984554	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:24:60
chr1	185984555	.	A	.	.	PASS	END=185984570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	185984571	.	T	.	.	PASS	END=185984572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	185984573	.	A	.	.	PASS	END=185984574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	185984575	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:0:60
chr1	185984576	.	A	.	.	PASS	END=185984596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	185984597	.	A	.	.	PASS	END=185984600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	185984601	.	C	.	.	LowGQX	END=185984603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	185984604	.	T	.	.	PASS	END=185984606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	185984607	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	185984608	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	185984609	.	C	.	.	LowGQX	END=185984618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	185984619	.	T	.	.	LowGQX	END=185984620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	185985039	.	T	.	.	PASS	END=185985051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	185985052	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:3:60
chr1	185985053	.	A	.	.	PASS	END=185985061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	185985062	.	C	.	.	PASS	END=185985086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	185985087	.	T	.	.	PASS	END=185985092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	185985093	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:9:60
chr1	185985094	.	T	.	.	PASS	END=185985099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	185985100	.	G	.	.	PASS	END=185985109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	185985110	.	A	.	.	PASS	END=185985122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	185985123	.	C	.	.	PASS	END=185985131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	185985132	.	A	.	.	PASS	END=185985153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	185985154	.	T	.	.	PASS	END=185985163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	185985164	.	G	.	.	PASS	END=185985166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	185985167	.	T	.	.	PASS	END=185985188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	185985189	.	C	.	.	PASS	END=185985305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	185985306	.	A	.	.	PASS	END=185985315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	185985316	.	C	.	.	PASS	END=185985322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	185985323	.	A	.	.	PASS	END=185985330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	185985331	.	G	.	.	PASS	END=185985334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	185985335	.	G	.	.	PASS	END=185985341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	185985342	.	A	.	.	PASS	END=185985351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	185985352	.	A	.	.	PASS	END=185985374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	185985375	.	A	.	.	PASS	END=185985396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	185985397	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	185985398	.	T	.	.	PASS	END=185985400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	185985401	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:0:60
chr1	185985402	.	A	.	.	PASS	END=185985404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	185985405	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	185985406	.	T	.	.	PASS	END=185985422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	185986044	.	G	.	.	PASS	END=185986072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	185986073	.	T	.	.	PASS	END=185986102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	185986103	.	G	.	.	PASS	END=185986151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	185986152	.	A	.	.	PASS	END=185986232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	185986233	.	C	.	.	PASS	END=185986254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	185987264	.	T	.	.	PASS	END=185987303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	185987304	.	T	.	.	PASS	END=185987336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:87:60
chr1	185987337	.	A	.	.	PASS	END=185987403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	185987404	.	T	.	.	PASS	END=185987413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	185987414	.	A	.	.	PASS	END=185987434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	185987435	.	A	.	.	PASS	END=185987454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	185987455	.	A	.	.	PASS	END=185987486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	185987487	.	A	.	.	PASS	END=185987504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	185987505	.	G	.	.	PASS	END=185987514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:60
chr1	185987515	.	T	.	.	PASS	END=185987535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	185988622	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:51:60
chr1	185988623	.	C	.	.	PASS	END=185988625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	185988626	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:51:60
chr1	185988627	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	185988628	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:42:60
chr1	185988629	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	185988630	.	A	.	.	PASS	END=185988632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	185988633	.	G	.	.	PASS	END=185988640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	185988641	.	T	.	.	PASS	END=185988649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	185988650	.	C	.	.	PASS	END=185988657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	185988658	.	C	.	.	PASS	END=185988677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	185988678	.	C	.	.	PASS	END=185988711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:78:60
chr1	185988712	.	T	.	.	PASS	END=185988742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	185988743	.	G	.	.	PASS	END=185988806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	185988807	.	A	.	.	PASS	END=185988826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:90:60
chr1	185988827	.	A	.	.	PASS	END=185988849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	185988850	.	C	.	.	PASS	END=185988862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	185988863	.	G	.	.	PASS	END=185988873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	185988874	.	C	.	.	PASS	END=185988878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	185992111	.	A	.	.	PASS	END=185992142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	185992143	.	G	.	.	PASS	END=185992155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	185992156	.	A	.	.	PASS	END=185992225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	185992226	.	C	.	.	PASS	END=185992266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	185992267	.	A	.	.	PASS	END=185992287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	185992288	.	A	.	.	PASS	END=185992308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	185992309	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:18:60
chr1	185992310	.	A	.	.	PASS	END=185992336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	186007015	.	G	.	.	PASS	END=186007097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	186007098	.	C	.	.	PASS	END=186007120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	186007121	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:63:60
chr1	186007122	.	A	.	.	PASS	END=186007134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	186007135	.	T	.	.	PASS	END=186007150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	186007151	.	T	.	.	PASS	END=186007166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	186007167	.	G	.	.	PASS	END=186007170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	186007171	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:3:60
chr1	186007172	.	A	.	.	PASS	END=186007210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	186007211	.	C	.	.	PASS	END=186007218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	186007910	.	T	.	.	PASS	END=186007959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	186007960	.	G	.	.	PASS	END=186007989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	186007990	.	C	.	.	PASS	END=186008039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	186008040	.	T	.	.	PASS	END=186008081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	186008082	.	C	.	.	PASS	END=186008110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	186008111	.	A	.	.	PASS	END=186008124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	186008125	.	C	.	.	PASS	END=186008141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	186008142	.	G	.	.	PASS	END=186008161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	186008162	.	A	.	.	PASS	END=186008176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	186008177	.	A	.	.	PASS	END=186008180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	186008181	.	T	.	.	PASS	END=186008188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	186008809	.	A	.	.	PASS	END=186008823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	186008824	.	A	.	.	PASS	END=186008905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	186008906	.	T	.	.	PASS	END=186008950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	186008951	.	C	.	.	PASS	END=186009061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	186009062	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:191:99:60
chr1	186010094	.	C	.	.	PASS	END=186010127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	186010128	.	G	.	.	PASS	END=186010206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	186010207	.	C	.	.	PASS	END=186010278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	186010279	.	T	.	.	PASS	END=186010313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	186010314	.	G	.	.	PASS	END=186010319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	186014769	.	A	.	.	PASS	END=186014779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	186014780	.	G	.	.	PASS	END=186014810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	186014811	.	T	.	.	PASS	END=186014842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	186014843	.	G	.	.	PASS	END=186014864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	186014865	.	T	.	.	PASS	END=186014975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	186014976	.	A	.	.	PASS	END=186014998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	186014999	.	A	.	.	PASS	END=186015029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	186015030	.	T	.	.	PASS	END=186015046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:87:60
chr1	186017824	.	A	.	.	PASS	END=186017846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	186017847	.	T	.	.	PASS	END=186017911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	186017912	.	C	.	.	PASS	END=186017959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	186017960	.	T	.	.	PASS	END=186018020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	186018021	.	T	.	.	PASS	END=186018022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	186022033	.	G	.	.	PASS	END=186022171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	186022172	.	T	.	.	PASS	END=186022187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	186022188	.	C	.	.	PASS	END=186022257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	186022906	.	A	.	.	PASS	END=186022912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	186022913	.	T	.	.	PASS	END=186022926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	186022927	.	T	.	.	PASS	END=186022959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	186022960	.	C	.	.	PASS	END=186023054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	186023055	.	T	.	.	PASS	END=186023074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	186023075	.	T	.	.	PASS	END=186023131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:96:60
chr1	186023132	.	T	.	.	PASS	END=186023156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:78:60
chr1	186023157	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:61:60
chr1	186023158	.	T	.	.	PASS	END=186023169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	186024474	.	T	.	.	PASS	END=186024489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	186024490	.	T	.	.	PASS	END=186024507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	186024508	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	186024509	.	T	.	.	PASS	END=186024510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	186024511	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:9:60
chr1	186024512	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	186024513	.	T	.	.	PASS	END=186024514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	186024515	.	C	.	.	PASS	END=186024516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	186024517	.	A	.	.	PASS	END=186024519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	186024520	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:12:60
chr1	186024521	.	T	.	.	PASS	END=186024522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	186024523	.	A	.	.	PASS	END=186024533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	186024534	.	C	.	.	PASS	END=186024546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	186024547	.	T	.	.	PASS	END=186024555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	186024556	.	C	.	.	PASS	END=186024560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	186024561	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:69:60
chr1	186024562	.	T	.	.	PASS	END=186024586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	186024587	.	A	.	.	PASS	END=186024593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	186024594	.	C	.	.	PASS	END=186024602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	186024603	.	G	.	.	PASS	END=186024612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	186024613	.	G	.	.	PASS	END=186024666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	186024667	.	G	.	.	PASS	END=186024743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	186024744	.	A	.	.	PASS	END=186024754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	186024755	.	G	.	.	PASS	END=186024765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	186024766	.	A	.	.	PASS	END=186024808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	186024809	.	A	.	.	PASS	END=186024819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	186024820	.	G	.	.	PASS	END=186024838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	186024839	.	C	.	.	PASS	END=186024855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	186024856	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:66:60
chr1	186024857	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:87:60
chr1	186026315	.	T	.	.	PASS	END=186026404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr1	186026405	.	A	.	.	PASS	END=186026459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:247:99:60
chr1	186026460	.	T	.	.	PASS	END=186026473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	186026474	.	T	C	3831.39	PASS	BaseQRankSum=2.325;DP=240;Dels=0.00;FS=1.035;HRun=0;HaplotypeScore=14.3597;MQ=60;MQ0=0;MQRankSum=0.594;QD=15.96;ReadPosRankSum=2.022;SB=-1775.74	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:103,136:240:99:3831,0,2801:60:99:0.569
chr1	186026475	.	A	.	.	PASS	END=186026543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	186026544	.	T	.	.	PASS	END=186026580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	186026581	.	T	.	.	PASS	END=186026584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	186030932	.	A	.	.	PASS	END=186030957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	186030958	.	T	.	.	PASS	END=186031023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	186031024	.	G	.	.	PASS	END=186031040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	186031041	.	C	T	783.83	PASS	BaseQRankSum=2.509;DP=76;Dels=0.00;FS=0.904;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=0.994;QD=10.31;ReadPosRankSum=0.784;SB=-402.24	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,32:76:99:814,0,1211:60:99:0.421
chr1	186031042	.	G	.	.	PASS	END=186031099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	186031100	.	C	.	.	PASS	END=186031108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	186031109	.	T	.	.	PASS	END=186031128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	186031129	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:72:60
chr1	186031130	.	T	.	.	PASS	END=186031147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	186031595	.	A	.	.	PASS	END=186031599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	186031600	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:33:60
chr1	186031601	.	T	.	.	PASS	END=186031606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr1	186031607	.	G	.	.	PASS	END=186031650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	186031651	.	C	.	.	PASS	END=186031740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:79:60
chr1	186031741	.	T	.	.	PASS	END=186031759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	186031760	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:69:60
chr1	186031761	.	G	.	.	PASS	END=186031781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	186031782	.	T	.	.	PASS	END=186031783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	186034319	.	T	.	.	PASS	END=186034337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	186034338	.	A	.	.	PASS	END=186034505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	186034506	.	T	.	.	PASS	END=186034612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	186036915	.	A	.	.	PASS	END=186036928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	186036929	.	T	.	.	PASS	END=186036942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	186036943	.	C	.	.	PASS	END=186036960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	186036961	.	T	.	.	PASS	END=186036983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	186036984	.	G	.	.	PASS	END=186036999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	186037000	.	C	.	.	PASS	END=186037031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	186037032	.	G	.	.	PASS	END=186037062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	186037063	.	A	.	.	PASS	END=186037178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	186037179	.	C	.	.	PASS	END=186037190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	186038744	.	T	.	.	PASS	END=186038776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	186038777	.	T	.	.	PASS	END=186038814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	186038815	.	C	.	.	PASS	END=186038872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	186038873	.	G	.	.	PASS	END=186038899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	186038900	.	A	.	.	PASS	END=186038940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:98:60
chr1	186038941	.	T	.	.	PASS	END=186038959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	186039693	.	C	.	.	PASS	END=186039716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	186039717	.	T	.	.	PASS	END=186039731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	186039732	.	T	.	.	PASS	END=186039747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	186039748	.	A	.	.	PASS	END=186039788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	186039789	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:69:69:60
chr1	186039790	.	C	.	.	PASS	END=186039882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	186039883	.	T	.	.	PASS	END=186039892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	186039893	.	A	.	.	PASS	END=186039932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	186039933	.	T	.	.	PASS	END=186039940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	186043822	.	A	.	.	LowGQX	END=186043824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	186043825	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	186043826	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	186043827	.	A	.	.	PASS	END=186043831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	186043832	.	T	.	.	PASS	END=186043858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	186043859	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:28:60
chr1	186043860	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:15:60
chr1	186043861	.	A	.	.	PASS	END=186043862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	186043863	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:25:60
chr1	186043864	.	G	.	.	PASS	END=186043872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	186043873	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:12:60
chr1	186043874	.	C	.	.	PASS	END=186043879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	186043880	.	A	.	.	PASS	END=186043890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr1	186043891	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:21:60
chr1	186043892	.	A	.	.	PASS	END=186043897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	186043898	.	A	.	.	PASS	END=186043913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	186043914	.	A	.	.	PASS	END=186043923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	186043924	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:71:60
chr1	186043925	.	A	.	.	PASS	END=186043957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	186043958	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:61:60
chr1	186043959	.	A	.	.	PASS	END=186043975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	186043976	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:54:60
chr1	186043977	.	T	.	.	PASS	END=186044030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	186044031	.	T	.	.	PASS	END=186044048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	186044049	.	A	.	.	PASS	END=186044053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	186044054	.	A	.	.	PASS	END=186044071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	186044072	.	A	.	.	PASS	END=186044074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:60
chr1	186045509	.	C	.	.	PASS	END=186045519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	186045520	.	C	.	.	PASS	END=186045536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	186045537	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:38:12:60
chr1	186045538	.	A	.	.	PASS	END=186045559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	186045560	.	T	.	.	PASS	END=186045561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	186045562	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:68:60
chr1	186045563	.	C	.	.	PASS	END=186045668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr1	186045669	.	G	.	.	PASS	END=186045679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	186045680	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:57:60
chr1	186045681	.	T	.	.	PASS	END=186045693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	186045694	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:54:60
chr1	186045695	.	T	.	.	PASS	END=186045710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	186045711	.	T	.	.	PASS	END=186045723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	186045724	.	A	.	.	PASS	END=186045748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	186045749	.	T	.	.	PASS	END=186045758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	186045759	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	186045760	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	186045761	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	186045762	.	T	.	.	PASS	END=186045763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	186045764	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr1	186045765	.	A	.	.	PASS	END=186045766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	186045767	.	A	.	.	LowGQX	END=186045770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	186045771	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	186045772	.	C	.	.	LowGQX	END=186045776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	186045777	.	T	.	.	LowGQX	END=186045778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	186045779	.	A	.	.	LowGQX	END=186045781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	186045782	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	186045783	.	G	.	.	LowGQX	END=186045805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	186047188	.	T	.	.	PASS	END=186047209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	186047210	.	G	.	.	PASS	END=186047338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	186047339	.	T	.	.	PASS	END=186047359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	186047360	.	T	.	.	PASS	END=186047403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	186050288	.	T	.	.	PASS	END=186050307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	186050308	.	T	.	.	PASS	END=186050334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	186050335	.	T	.	.	PASS	END=186050370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	186050371	.	C	.	.	PASS	END=186050405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	186050406	.	T	.	.	PASS	END=186050416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	186050417	.	A	G	1662.68	PASS	BaseQRankSum=0.846;DP=145;Dels=0.00;FS=0.651;HRun=1;HaplotypeScore=7.6178;MQ=60;MQ0=0;MQRankSum=-1.101;QD=11.47;ReadPosRankSum=0.962;SB=-691.57	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:81,64:145:99:1693,0,2165:60:99:0.441
chr1	186050418	.	G	.	.	PASS	END=186050483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	186050484	.	A	.	.	PASS	END=186050533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	186050534	.	T	.	.	PASS	END=186050577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	186051946	.	C	.	.	PASS	END=186051980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	186051981	.	T	.	.	PASS	END=186052028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	186052029	.	G	.	.	PASS	END=186052063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	186052064	.	C	.	.	PASS	END=186052144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	186055327	.	A	.	.	PASS	END=186055349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	186055350	.	T	.	.	PASS	END=186055370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	186055371	.	A	G	887.19	PASS	BaseQRankSum=1.029;DP=86;Dels=0.00;FS=0.872;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=-0.236;QD=10.32;ReadPosRankSum=-0.619;SB=-404.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:49,37:86:99:917,0,1130:60:99:0.430
chr1	186055372	.	T	.	.	PASS	END=186055455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	186055456	.	T	.	.	PASS	END=186055483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	186055484	.	C	.	.	PASS	END=186055511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:78:60
chr1	186055512	.	C	.	.	PASS	END=186055522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	186055523	.	T	.	.	PASS	END=186055537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	186055538	.	T	.	.	PASS	END=186055552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	186055553	.	T	.	.	PASS	END=186055564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	186055565	.	G	.	.	PASS	END=186055575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	186055576	.	C	.	.	PASS	END=186055590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	186056298	.	G	.	.	PASS	END=186056307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	186056308	.	C	.	.	PASS	END=186056310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	186056311	.	G	.	.	PASS	END=186056340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	186056341	.	A	.	.	PASS	END=186056379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	186056380	.	G	.	.	PASS	END=186056392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	186056393	.	G	.	.	PASS	END=186056513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	186056524	.	T	.	.	PASS	END=186056578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	186056579	.	C	.	.	PASS	END=186056622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	186056623	.	A	.	.	PASS	END=186056701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	186056702	.	T	.	.	PASS	END=186056728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	186056729	.	T	.	.	PASS	END=186056751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	186056752	.	A	.	.	PASS	END=186056772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	186056773	.	C	.	.	PASS	END=186056788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	186056789	.	A	.	.	PASS	END=186056828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:59
chr1	186057013	.	T	.	.	PASS	END=186057065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	186057066	.	A	.	.	PASS	END=186057080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	186057081	.	G	.	.	PASS	END=186057136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	186057137	.	A	.	.	PASS	END=186057180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	186057181	.	T	C	1890.46	PASS	BaseQRankSum=-0.700;DP=155;Dels=0.00;FS=1.579;HRun=4;HaplotypeScore=13.5098;MQ=60;MQ0=0;MQRankSum=1.380;QD=12.20;ReadPosRankSum=0.818;SB=-564.85	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:78,77:155:99:1920,0,2071:60:99:0.497
chr1	186057182	.	A	.	.	PASS	END=186057196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	186057226	.	C	.	.	PASS	END=186057356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	186057357	.	A	.	.	PASS	END=186057380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	186057381	.	G	.	.	PASS	END=186057414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	186057415	.	C	.	.	PASS	END=186057429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:59
chr1	186057430	.	G	.	.	PASS	END=186057442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:59
chr1	186057443	.	T	.	.	PASS	END=186057459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:59
chr1	186057687	.	T	.	.	PASS	END=186057744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	186057745	.	T	.	.	PASS	END=186057749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:90:60
chr1	186057750	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:60:60
chr1	186057751	.	A	.	.	PASS	END=186057831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	186057832	.	T	.	.	PASS	END=186057858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	186057859	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:57:60
chr1	186057860	.	C	.	.	PASS	END=186057870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	186057871	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:48:60
chr1	186057872	.	T	.	.	PASS	END=186057895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	186057896	.	T	.	.	PASS	END=186057897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	186057898	.	T	.	.	PASS	END=186057899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	186057900	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:47:60
chr1	186057901	.	A	.	.	PASS	END=186057910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	186057911	.	A	.	.	PASS	END=186057912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	186057913	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:60
chr1	186057914	.	T	.	.	PASS	END=186057938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	186059839	.	G	.	.	PASS	END=186059846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	186059847	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:66:60
chr1	186059848	.	T	.	.	PASS	END=186059875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	186059876	.	T	.	.	PASS	END=186059892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	186059893	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:60:60
chr1	186059894	.	T	.	.	PASS	END=186059947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:91:60
chr1	186059948	.	A	.	.	PASS	END=186060018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	186060019	.	C	.	.	PASS	END=186060047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	186060048	.	C	.	.	PASS	END=186060073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	186060074	.	T	.	.	PASS	END=186060089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	186060090	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:45:60
chr1	186060091	.	T	.	.	PASS	END=186060098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	186060099	.	T	.	.	PASS	END=186060100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	186062215	.	T	.	.	PASS	END=186062238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	186062239	.	G	.	.	PASS	END=186062246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	186062247	.	G	.	.	PASS	END=186062262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	186062263	.	T	.	.	PASS	END=186062296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	186062297	.	T	.	.	PASS	END=186062322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	186062323	.	G	.	.	PASS	END=186062397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	186062398	.	T	.	.	PASS	END=186062441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	186062567	.	T	.	.	PASS	END=186062585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	186062586	.	C	.	.	PASS	END=186062696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:60
chr1	186062697	.	C	.	.	PASS	END=186062722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:277:99:60
chr1	186062723	.	A	.	.	PASS	END=186062761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	186062762	.	C	.	.	PASS	END=186062832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	186062833	.	A	.	.	PASS	END=186062851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	186062852	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:123:99:60
chr1	186063357	.	T	.	.	PASS	END=186063358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	186063359	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:3:60
chr1	186063360	.	T	.	.	PASS	END=186063364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	186063365	.	G	.	.	PASS	END=186063401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	186063402	.	T	.	.	PASS	END=186063405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:60
chr1	186063406	.	A	.	.	PASS	END=186063408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:45:60
chr1	186063409	.	A	.	.	PASS	END=186063435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr1	186063436	.	G	.	.	PASS	END=186063440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	186063441	.	G	.	.	PASS	END=186063556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:92:60
chr1	186064324	.	T	.	.	PASS	END=186064332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:75:60
chr1	186064333	.	A	.	.	PASS	END=186064340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr1	186064341	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:36:12:60
chr1	186064342	.	A	.	.	PASS	END=186064363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr1	186064364	.	T	.	.	PASS	END=186064378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	186064379	.	A	.	.	PASS	END=186064394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	186064395	.	T	.	.	PASS	END=186064419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	186064420	.	T	.	.	PASS	END=186064437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	186064438	.	C	.	.	PASS	END=186064504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	186064505	.	T	.	.	PASS	END=186064556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	186064557	.	C	.	.	PASS	END=186064588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	186064589	.	G	.	.	PASS	END=186064616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	186064617	.	G	.	.	PASS	END=186064637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	186064638	.	A	.	.	PASS	END=186064655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	186064656	.	A	.	.	PASS	END=186064682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:96:60
chr1	186064683	.	A	.	.	PASS	END=186064701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	186064702	.	G	.	.	PASS	END=186064704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	186072553	.	A	.	.	PASS	END=186072595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	186072596	.	T	.	.	PASS	END=186072652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	186072653	.	T	.	.	PASS	END=186072759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	186072760	.	C	.	.	PASS	END=186072844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	186072845	.	T	.	.	PASS	END=186072851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	186075965	.	A	.	.	PASS	END=186075983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	186075984	.	A	.	.	PASS	END=186076087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	186076088	.	A	.	.	PASS	END=186076132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	186076133	.	A	.	.	PASS	END=186076134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	186076135	.	A	.	.	PASS	END=186076148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	186077542	.	G	.	.	PASS	END=186077549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:59
chr1	186077550	.	T	.	.	PASS	END=186077597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:59
chr1	186077598	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:72:59
chr1	186077599	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:30:59
chr1	186077600	.	T	.	.	PASS	END=186077620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:59
chr1	186077621	.	G	.	.	PASS	END=186077626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	186077627	.	G	.	.	PASS	END=186077701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	186077702	.	T	.	.	PASS	END=186077754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	186077755	.	A	.	.	PASS	END=186077776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	186077777	.	G	.	.	PASS	END=186077780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	186081893	.	T	.	.	PASS	END=186081911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	186081912	.	T	.	.	PASS	END=186081917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	186081918	.	C	T	249.53	PASS	BaseQRankSum=0.528;DP=21;Dels=0.00;FS=2.473;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=1.021;QD=11.88;ReadPosRankSum=-0.246;SB=-61.85	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:11,10:21:99:280,0,343:60:99:0.476
chr1	186081919	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:48:60
chr1	186081920	.	A	.	.	PASS	END=186081934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	186081935	.	T	.	.	PASS	END=186081946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	186081947	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:66:60
chr1	186081948	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:87:60
chr1	186081949	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:60:60
chr1	186081950	.	C	.	.	PASS	END=186081995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	186081996	.	A	.	.	PASS	END=186082025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	186082026	.	C	.	.	PASS	END=186082136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:91:60
chr1	186083060	.	G	.	.	PASS	END=186083063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	186083064	.	G	.	.	PASS	END=186083074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr1	186083075	.	T	.	.	PASS	END=186083099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	186083100	.	C	.	.	PASS	END=186083103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	186083104	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:39:60
chr1	186083105	.	G	.	.	PASS	END=186083133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:85:60
chr1	186083134	.	C	.	.	PASS	END=186083188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	186083189	.	A	.	.	PASS	END=186083231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	186083232	.	T	.	.	PASS	END=186083257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	186083258	.	A	.	.	PASS	END=186083306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	186083900	.	A	.	.	PASS	END=186084022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	186084023	.	T	.	.	PASS	END=186084046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	186084047	.	A	.	.	PASS	END=186084117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	186084118	.	A	.	.	PASS	END=186084129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	186084339	.	G	.	.	PASS	END=186084413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	186084414	.	C	.	.	PASS	END=186084490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	186084491	.	A	.	.	PASS	END=186084554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	186084555	.	A	.	.	PASS	END=186084585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	186084586	.	A	.	.	PASS	END=186084597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	186086075	.	A	.	.	PASS	END=186086088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:98:60
chr1	186086089	.	A	.	.	PASS	END=186086105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	186086106	.	C	.	.	PASS	END=186086158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	186086159	.	C	.	.	PASS	END=186086214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	186086215	.	A	.	.	PASS	END=186086244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	186086245	.	A	.	.	PASS	END=186086282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	186086283	.	A	.	.	PASS	END=186086295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	186086296	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:66:60
chr1	186086297	.	G	.	.	PASS	END=186086298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	186086540	.	A	.	.	PASS	END=186086542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	186086543	.	G	.	.	PASS	END=186086551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	186086552	.	G	.	.	PASS	END=186086567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	186086568	.	T	.	.	PASS	END=186086577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	186086578	.	G	A	636.48	PASS	BaseQRankSum=1.976;DP=44;Dels=0.00;FS=4.662;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-0.916;QD=14.47;ReadPosRankSum=-1.085;SB=-384.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:17,27:44:99:666,0,465:60:99:0.614
chr1	186086579	.	T	.	.	PASS	END=186086612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:83:60
chr1	186086613	.	G	.	.	PASS	END=186086653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	186086654	.	T	.	.	PASS	END=186086735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	186086736	.	C	.	.	PASS	END=186086762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:88:60
chr1	186086763	.	C	.	.	PASS	END=186086790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	186086791	.	T	.	.	PASS	END=186086805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	186086806	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:69:60
chr1	186088272	.	C	.	.	PASS	END=186088297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	186088298	.	T	.	.	PASS	END=186088364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	186088365	.	G	.	.	PASS	END=186088424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	186088425	.	T	.	.	PASS	END=186088448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	186088449	.	T	.	.	PASS	END=186088481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	186088826	.	G	.	.	PASS	END=186088855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	186088856	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:39:60
chr1	186088857	.	G	.	.	PASS	END=186088882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	186088883	.	C	.	.	PASS	END=186088900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	186088901	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:55:60
chr1	186088902	.	A	.	.	PASS	END=186088913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	186088914	.	C	.	.	PASS	END=186088932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	186088933	.	A	.	.	PASS	END=186088956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	186088957	.	G	.	.	PASS	END=186089040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	186089041	.	A	.	.	PASS	END=186089065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	186089092	.	A	.	.	PASS	END=186089191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	186089192	.	T	.	.	PASS	END=186089219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	186089220	.	T	.	.	PASS	END=186089249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	186089250	.	T	.	.	PASS	END=186089279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr1	186089280	.	A	.	.	PASS	END=186089281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	186089282	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:66:60
chr1	186089283	.	T	.	.	PASS	END=186089323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	186089324	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:45:60
chr1	186089325	.	A	.	.	PASS	END=186089328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	186092032	.	A	.	.	PASS	END=186092051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	186092052	.	G	.	.	PASS	END=186092098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	186092099	.	C	.	.	PASS	END=186092121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	186092122	.	T	.	.	PASS	END=186092139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	186092140	.	T	.	.	PASS	END=186092207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	186092208	.	A	.	.	PASS	END=186092279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	186092280	.	G	.	.	PASS	END=186092292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	186092293	.	C	.	.	PASS	END=186092316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	186092317	.	G	.	.	PASS	END=186092340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	186092341	.	T	.	.	PASS	END=186092358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	186092359	.	T	.	.	PASS	END=186092365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	186092366	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:69:60
chr1	186092367	.	A	.	.	PASS	END=186092387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	186092388	.	C	.	.	PASS	END=186092396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	186092397	.	G	.	.	PASS	END=186092398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	186092399	.	C	.	.	PASS	END=186092403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:90:60
chr1	186094685	.	G	.	.	PASS	END=186094714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	186094715	.	T	.	.	PASS	END=186094729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	186094730	.	T	.	.	PASS	END=186094745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	186094746	.	G	.	.	PASS	END=186094758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	186094759	.	G	.	.	PASS	END=186094766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	186094767	.	C	.	.	PASS	END=186094894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	186094895	.	C	.	.	PASS	END=186094904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	186094905	.	A	.	.	PASS	END=186094914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	186094915	.	G	.	.	PASS	END=186094943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	186094944	.	G	.	.	PASS	END=186094961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	186094962	.	A	.	.	PASS	END=186094977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	186097159	.	T	.	.	PASS	END=186097163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	186097164	.	T	.	.	PASS	END=186097175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	186097176	.	A	.	.	PASS	END=186097179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	186097180	.	A	.	.	PASS	END=186097190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	186097191	.	T	.	.	PASS	END=186097223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	186097224	.	C	.	.	PASS	END=186097233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	186097234	.	T	.	.	PASS	END=186097262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	186097263	.	T	.	.	PASS	END=186097277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	186097278	.	C	.	.	PASS	END=186097313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	186097314	.	T	.	.	PASS	END=186097347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	186097348	.	C	.	.	PASS	END=186097420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	186097421	.	C	.	.	PASS	END=186097460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:93:60
chr1	186097461	.	C	.	.	PASS	END=186097474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	186099047	.	A	.	.	PASS	END=186099109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	186099110	.	G	.	.	PASS	END=186099172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	186099173	.	T	.	.	PASS	END=186099194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	186099195	.	T	.	.	PASS	END=186099244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	186099245	.	G	.	.	PASS	END=186099247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	186099248	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:33:60
chr1	186099249	.	C	.	.	PASS	END=186099255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	186099256	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:66:60
chr1	186099257	.	A	.	.	PASS	END=186099265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	186099266	.	G	.	.	PASS	END=186099277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	186099278	.	A	.	.	PASS	END=186099283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	186099588	.	A	.	.	PASS	END=186099684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	186099685	.	A	.	.	PASS	END=186099820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	186099821	.	G	.	.	PASS	END=186099836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	186099837	.	A	.	.	PASS	END=186099880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	186101409	.	G	.	.	PASS	END=186101416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	186101417	.	C	.	.	PASS	END=186101502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	186101503	.	C	.	.	PASS	END=186101592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	186105749	.	A	.	.	PASS	END=186105754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	186105755	.	C	.	.	LowGQX	END=186105771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	186105772	.	C	.	.	PASS	END=186105776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	186105777	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	186105778	.	C	.	.	PASS	END=186105784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	186105785	.	T	.	.	LowGQX	END=186105788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	186105789	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	186105790	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	186105791	.	T	.	.	PASS	END=186105799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	186105800	.	G	.	.	PASS	END=186105802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	186105803	.	C	.	.	PASS	END=186105815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	186105816	.	T	.	.	PASS	END=186105823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	186105824	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:1:60
chr1	186105825	.	A	.	.	PASS	END=186105851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	186105852	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:60:60
chr1	186105853	.	A	.	.	PASS	END=186105857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	186105858	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:69:60
chr1	186105859	.	A	.	.	PASS	END=186105888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:83:60
chr1	186105889	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:72:60
chr1	186105890	.	A	.	.	PASS	END=186105895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	186105896	.	C	.	.	PASS	END=186105909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	186105910	.	C	.	.	PASS	END=186105930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	186105931	.	T	.	.	PASS	END=186106042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	186106043	.	T	.	.	PASS	END=186106056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	186106057	.	G	.	.	PASS	END=186106070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	186106071	.	T	.	.	PASS	END=186106076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	186106077	.	T	.	.	PASS	END=186106084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	186106085	.	G	.	.	PASS	END=186106104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	186106105	.	T	.	.	PASS	END=186106110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	186106111	.	G	.	.	PASS	END=186106113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	186106114	.	T	.	.	PASS	END=186106120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	186106579	.	A	.	.	PASS	END=186106597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	186106598	.	A	.	.	PASS	END=186106631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	186106632	.	C	.	.	PASS	END=186106643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	186106644	.	T	.	.	PASS	END=186106655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	186106656	.	G	.	.	PASS	END=186106680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	186106681	.	G	.	.	PASS	END=186106721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	186106722	.	C	.	.	PASS	END=186106737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	186106738	.	G	.	.	PASS	END=186106822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	186106823	.	T	.	.	PASS	END=186106850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	186106851	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:74:99:60
chr1	186106883	.	G	.	.	PASS	END=186106889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	186106890	.	C	.	.	PASS	END=186106915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	186106916	.	T	.	.	PASS	END=186106944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	186106945	.	T	.	.	PASS	END=186106984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	186106985	.	G	.	.	PASS	END=186107090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	186107091	.	T	.	.	PASS	END=186107112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	186107113	.	C	.	.	PASS	END=186107132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	186107133	.	A	.	.	PASS	END=186107139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	186107140	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:69:60
chr1	186107141	.	T	.	.	PASS	END=186107144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	186107145	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr1	186107146	.	T	.	.	PASS	END=186107153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	186107154	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:60:60
chr1	186107155	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:99:60
chr1	186113254	.	T	.	.	PASS	END=186113274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr1	186113275	.	A	.	.	PASS	END=186113296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	186113297	.	G	.	.	PASS	END=186113314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	186113315	.	A	.	.	PASS	END=186113349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	186113350	.	A	.	.	PASS	END=186113461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	186113462	.	A	.	.	PASS	END=186113500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	186113501	.	T	.	.	PASS	END=186113526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	186113614	.	A	.	.	PASS	END=186113637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	186113638	.	A	.	.	PASS	END=186113653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	186113654	.	C	.	.	PASS	END=186113657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	186113658	.	A	.	.	PASS	END=186113698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	186113699	.	T	.	.	PASS	END=186113700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	186113701	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:63:60
chr1	186113702	.	C	.	.	PASS	END=186113736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	186113737	.	G	.	.	PASS	END=186113769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	186113770	.	A	.	.	PASS	END=186113851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	186113852	.	G	C	478.35	PASS	BaseQRankSum=0.611;DP=64;Dels=0.00;FS=1.075;HRun=0;HaplotypeScore=11.3630;MQ=60;MQ0=0;MQRankSum=0.537;QD=7.47;ReadPosRankSum=0.037;SB=-277.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:40,22:64:99:508,0,869:60:99:0.355
chr1	186113853	.	T	.	.	PASS	END=186113886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:84:60
chr1	186114484	.	A	.	.	PASS	END=186114564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	186114565	.	G	.	.	PASS	END=186114624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:258:99:60
chr1	186114625	.	A	.	.	PASS	END=186114699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:327:99:60
chr1	186114700	.	G	.	.	PASS	END=186114756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:400:99:60
chr1	186114834	.	A	.	.	PASS	END=186114927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:289:99:60
chr1	186114928	.	T	.	.	PASS	END=186114954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr1	186114955	.	T	.	.	PASS	END=186114993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	186114994	.	T	.	.	PASS	END=186115017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	186115018	.	T	.	.	PASS	END=186115027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	186115028	.	A	.	.	PASS	END=186115046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	186115047	.	C	.	.	PASS	END=186115048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	186115049	.	T	.	.	PASS	END=186115056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	186115057	.	T	.	.	PASS	END=186115081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	186115082	.	G	.	.	PASS	END=186115085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	186115086	.	A	.	.	PASS	END=186115091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	186115092	.	A	.	.	PASS	END=186115095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	186115096	.	T	.	.	PASS	END=186115098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:61
chr1	186115099	.	G	.	.	PASS	END=186115101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:61
chr1	186115102	.	C	.	.	PASS	END=186115106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:61
chr1	186120281	.	T	.	.	PASS	END=186120318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	186120319	.	T	.	.	PASS	END=186120334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	186120335	.	G	.	.	PASS	END=186120355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	186120356	.	G	.	.	PASS	END=186120486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	186120487	.	T	.	.	PASS	END=186120499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	186120500	.	C	.	.	PASS	END=186120532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	186120687	.	A	.	.	PASS	END=186120827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:84:60
chr1	186120828	.	T	.	.	PASS	END=186120832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	186120833	.	A	.	.	PASS	END=186120839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	186120840	.	T	.	.	PASS	END=186120858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	186120859	.	A	.	.	PASS	END=186120876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	186120877	.	T	.	.	PASS	END=186120878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	186120879	.	A	.	.	PASS	END=186120881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	186120882	.	G	.	.	PASS	END=186120887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	186120888	.	T	.	.	PASS	END=186120899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	186120900	.	T	.	.	PASS	END=186120915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	186120916	.	G	.	.	PASS	END=186120918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:60
chr1	186120919	.	C	.	.	PASS	END=186120926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	186121831	.	T	.	.	PASS	END=186121920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	186121921	.	A	.	.	PASS	END=186121968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	186121969	.	T	.	.	PASS	END=186121994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	186121995	.	A	.	.	PASS	END=186122049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:98:60
chr1	186122050	.	T	.	.	PASS	END=186122054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	186122831	.	A	.	.	LowGQX	END=186122839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	186122840	.	T	.	.	LowGQX	END=186122842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	186122843	.	G	.	6.76	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.02:60:0
chr1	186122844	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:60
chr1	186122845	.	G	.	.	LowGQX	END=186122849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	186122850	.	A	.	.	LowGQX	END=186122853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	186122854	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	186122855	.	T	.	.	LowGQX	END=186122865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	186122866	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	186122867	.	C	.	.	LowGQX	END=186122875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	186122876	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	186122877	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	186122878	.	T	.	.	PASS	END=186122885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	186122886	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:42:60
chr1	186122887	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:3:60
chr1	186122888	.	A	.	.	PASS	END=186122894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	186122895	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	186122896	.	C	.	.	PASS	END=186122898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	186122899	.	C	.	.	PASS	END=186122909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	186122910	.	G	.	.	PASS	END=186122914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	186122915	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:39:60
chr1	186122916	.	G	.	.	PASS	END=186122920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	186122921	.	C	.	.	PASS	END=186122935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:83:60
chr1	186122936	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:68:60
chr1	186122937	.	C	.	.	PASS	END=186122967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	186122968	.	C	.	.	PASS	END=186123009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	186123010	.	G	.	.	PASS	END=186123059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	186123060	.	C	.	.	PASS	END=186123113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:82:60
chr1	186123114	.	C	.	.	PASS	END=186123153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	186123154	.	C	.	.	PASS	END=186123157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	186123158	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:60
chr1	186123159	.	A	.	.	PASS	END=186123170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr1	186134192	.	G	.	.	PASS	END=186134205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	186134206	.	A	.	.	PASS	END=186134222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	186134223	.	T	.	.	PASS	END=186134229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	186134230	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:51:60
chr1	186134231	.	T	.	.	PASS	END=186134242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	186134243	.	G	.	.	PASS	END=186134268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:91:60
chr1	186134269	.	G	.	.	PASS	END=186134356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	186135265	.	G	.	.	PASS	END=186135388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	186135389	.	C	.	.	PASS	END=186135414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	186135415	.	C	.	.	PASS	END=186135468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	186135469	.	T	.	.	PASS	END=186135486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	186135889	.	G	.	.	PASS	END=186135896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	186135897	.	T	.	.	PASS	END=186135906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	186135907	.	C	.	.	PASS	END=186135916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	186135917	.	T	.	.	PASS	END=186135925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	186135926	.	T	.	.	PASS	END=186135938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	186135939	.	G	.	.	PASS	END=186135958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	186135959	.	G	.	.	PASS	END=186135980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:85:60
chr1	186135981	.	G	.	.	PASS	END=186136017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	186136018	.	G	.	.	PASS	END=186136083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	186136084	.	T	.	.	PASS	END=186136114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	186136115	.	A	.	.	PASS	END=186136125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	186140418	.	A	.	.	PASS	END=186140561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	186140562	.	T	.	.	PASS	END=186140623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	186140624	.	A	.	.	PASS	END=186140633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	186141087	.	A	.	.	PASS	END=186141150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	186141151	.	T	.	.	PASS	END=186141271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	186141272	.	C	.	.	PASS	END=186141300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	186141301	.	G	A	1998.10	PASS	BaseQRankSum=1.421;DP=160;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=15.2035;MQ=60;MQ0=0;MQRankSum=-1.097;QD=12.49;ReadPosRankSum=-0.822;SB=-1098.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:78,81:160:99:2028,0,1859:60:99:0.509
chr1	186141302	.	C	.	.	PASS	END=186141314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	186143595	.	C	.	.	PASS	END=186143616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	186143617	.	G	.	.	PASS	END=186143656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	186143657	.	T	.	.	PASS	END=186143754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	186143755	.	A	.	.	PASS	END=186143784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	186143785	.	A	.	.	PASS	END=186143813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	186143814	.	T	.	.	PASS	END=186143825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	186147497	.	G	.	.	PASS	END=186147504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	186147505	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:48:60
chr1	186147506	.	T	.	.	PASS	END=186147520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	186147521	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:39:60
chr1	186147522	.	T	.	.	PASS	END=186147531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	186147532	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:48:60
chr1	186147533	.	A	.	.	PASS	END=186147542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	186147543	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:42:60
chr1	186147544	.	G	.	.	PASS	END=186147551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	186147552	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:75:60
chr1	186147553	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:51:60
chr1	186147554	.	A	.	.	PASS	END=186147568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	186147569	.	T	.	.	PASS	END=186147571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	186147572	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:33:60
chr1	186147573	.	T	.	.	PASS	END=186147579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	186147580	.	T	.	.	PASS	END=186147583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:87:60
chr1	186147584	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:51:60
chr1	186147585	.	A	.	.	PASS	END=186147590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	186147591	.	G	.	.	PASS	END=186147625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	186147626	.	G	.	.	PASS	END=186147659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	186147660	.	A	.	.	PASS	END=186147690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	186147691	.	T	.	.	PASS	END=186147709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	186147710	.	G	.	.	PASS	END=186147773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	186147774	.	G	.	.	PASS	END=186147850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	186147851	.	G	.	.	PASS	END=186147877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	186147878	.	C	.	.	PASS	END=186147901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	186147902	.	A	.	.	PASS	END=186147917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	186147918	.	C	.	.	PASS	END=186147945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	186147946	.	A	.	.	PASS	END=186147949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	186151249	.	T	.	.	PASS	END=186151287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	186151288	.	C	.	.	PASS	END=186151323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	186151324	.	A	.	.	PASS	END=186151391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	186151392	.	C	.	.	PASS	END=186151427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	186151428	.	A	.	.	PASS	END=186151453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	186151454	.	T	.	.	PASS	END=186151470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	186156964	.	C	.	.	PASS	END=186156969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	186156970	.	C	.	.	PASS	END=186156973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	186156974	.	C	.	.	PASS	END=186156979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	186156980	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:27:60
chr1	186156981	.	T	.	.	PASS	END=186156993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	186156994	.	T	.	.	PASS	END=186156996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	186156997	.	T	.	.	PASS	END=186157003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr1	186157004	.	G	.	.	PASS	END=186157005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:64:60
chr1	186157006	.	T	.	.	PASS	END=186157036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	186157037	.	G	.	.	PASS	END=186157061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	186157062	.	A	.	.	PASS	END=186157085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	186157086	.	T	.	.	PASS	END=186157113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	186157114	.	C	.	.	PASS	END=186157192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	186158593	.	T	.	.	PASS	END=186158627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	186158628	.	T	.	.	PASS	END=186158642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	186158643	.	G	.	.	PASS	END=186158682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:269:99:60
chr1	186158683	.	T	.	.	PASS	END=186158802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:306:99:60
chr1	186158803	.	A	.	.	PASS	END=186158918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	186158919	.	G	.	.	PASS	END=186158998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	186158999	.	T	.	.	PASS	END=186159022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	186159023	.	A	.	.	PASS	END=186159054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	186159055	.	A	.	.	PASS	END=186159061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	186265957	.	A	.	.	PASS	END=186265980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	186265981	.	G	.	.	PASS	END=186266014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	186266015	.	G	.	.	PASS	END=186266047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	186266048	.	T	.	.	PASS	END=186266134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	186269172	.	C	.	.	PASS	END=186269190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	186269191	.	G	.	.	PASS	END=186269234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	186269235	.	G	.	.	PASS	END=186269261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	186269262	.	C	.	.	PASS	END=186269340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	186269341	.	T	.	.	PASS	END=186269384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	186269385	.	C	.	.	PASS	END=186269396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	186270673	.	G	.	.	PASS	END=186270698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	186270699	.	T	.	.	PASS	END=186270717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	186270718	.	G	.	.	PASS	END=186270746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	186270747	.	T	.	.	PASS	END=186270775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	186270776	.	T	.	.	PASS	END=186270843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	186270844	.	G	.	.	PASS	END=186270864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	186270865	.	A	.	.	PASS	END=186270888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	186270889	.	T	.	.	PASS	END=186270893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	186270894	.	A	G	1643.22	PASS	DP=52;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;QD=31.60;SB=-652.92	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,52:52:99:1676,129,0:60:99:1.000
chr1	186273189	.	T	.	.	PASS	END=186273201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	186273202	.	A	.	.	PASS	END=186273219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	186273220	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:48:60
chr1	186273221	.	T	.	.	PASS	END=186273224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	186273225	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:55:60
chr1	186273226	.	T	.	.	PASS	END=186273240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	186273241	.	G	.	.	PASS	END=186273256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	186273257	.	C	.	.	PASS	END=186273290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	186273291	.	G	.	.	PASS	END=186273391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	186273392	.	A	.	.	PASS	END=186273412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	186273413	.	A	.	.	PASS	END=186273435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	186273436	.	A	.	.	PASS	END=186273440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	186273875	.	T	.	.	PASS	END=186273917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	186273918	.	A	.	.	PASS	END=186273946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	186273947	.	A	.	.	PASS	END=186273993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	186273994	.	C	T	5238.32	PASS	BaseQRankSum=1.184;DP=191;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=15.2035;MQ=60;MQ0=0;MQRankSum=-1.605;QD=27.43;ReadPosRankSum=1.163;SB=-2524.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:3,188:191:99:5238,370,0:60:99:0.984
chr1	186273995	.	G	.	.	PASS	END=186274072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	186274073	.	A	.	.	PASS	END=186274087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	186274088	.	A	.	.	PASS	END=186274104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	186274105	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:84:99:60
chr1	186275399	.	T	.	.	PASS	END=186275430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	186275431	.	A	.	.	PASS	END=186275450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	186275451	.	A	.	.	PASS	END=186275452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	186275453	.	A	.	.	PASS	END=186275470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	186275471	.	G	.	.	PASS	END=186275481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	186275482	.	A	.	.	PASS	END=186275484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	186275485	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:39:60
chr1	186275486	.	C	.	.	PASS	END=186275501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	186275502	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:99:60
chr1	186275503	.	G	.	.	PASS	END=186275528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	186275529	.	G	.	.	PASS	END=186275540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	186275541	.	C	.	.	PASS	END=186275556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	186275557	.	C	.	.	PASS	END=186275571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	186275572	.	A	.	.	PASS	END=186275595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	186275596	.	T	.	.	PASS	END=186275645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	186275646	.	A	.	.	PASS	END=186275683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr1	186275684	.	T	.	.	PASS	END=186275900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:299:99:59
chr1	186275901	.	C	.	.	PASS	END=186275928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:59
chr1	186275929	.	T	.	.	PASS	END=186275981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:53
chr1	186275982	.	C	T	14.41	LowGQX;LowQD;SB	BaseQRankSum=2.225;DP=147;Dels=0.00;FS=7.448;HRun=0;HaplotypeScore=62.8710;MQ=53;MQ0=3;MQRankSum=0.713;QD=0.10;ReadPosRankSum=-0.819;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:117,9:147:44.25:44,0,1367:53:14:0.071
chr1	186275983	.	C	.	.	PASS	END=186275995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:48
chr1	186275996	.	C	.	.	PASS	END=186275999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:90:44
chr1	186276000	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:86:55:41
chr1	186276001	.	A	.	.	PASS	END=186276007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:78:35
chr1	186276008	.	C	.	.	PASS	END=186276012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:66:29
chr1	186276013	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:73:48:26
chr1	186276014	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:72:24:26
chr1	186276015	.	T	.	.	PASS	END=186276019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:45:21
chr1	186276020	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:76:36:20
chr1	186276021	.	C	.	.	LowMQ	END=186276026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:33:16
chr1	186276027	.	T	.	.	LowGQX;LowMQ	END=186276028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:27:15
chr1	186276029	.	C	.	.	LowMQ	END=186276034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:30:15
chr1	186276035	.	A	.	.	LowGQX;LowMQ	END=186276036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:21:13
chr1	186276037	.	C	.	.	LowMQ	END=186276038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:30:14
chr1	186276039	.	T	.	.	LowGQX;LowMQ	END=186276040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:24:14
chr1	186276041	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:95:39:14
chr1	186276042	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:94:18:14
chr1	186276043	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:101:42:15
chr1	186276044	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:95:1:15
chr1	186276045	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:100:30:16
chr1	186276046	.	A	.	.	LowMQ	END=186276047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:66:16
chr1	186276048	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:103:33:16
chr1	186276049	.	A	.	.	LowMQ	END=186276050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:60:16
chr1	186276051	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:106:21:16
chr1	186276052	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:110:30:16
chr1	186276053	.	C	.	.	LowMQ	END=186276055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:57:16
chr1	186276056	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:102:48:16
chr1	186276057	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:103:18:16
chr1	186276058	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:101:42:16
chr1	186276059	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:102:24:16
chr1	186276060	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:106:39:16
chr1	186276061	.	C	.	.	LowMQ	END=186276062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:51:16
chr1	186276063	.	T	.	.	LowMQ	END=186276064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:39:16
chr1	186276065	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:116:69:16
chr1	186276066	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:119:0:15
chr1	186276067	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:126:60:17
chr1	186276068	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:117:36:17
chr1	186276069	.	C	.	.	LowMQ	END=186276073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:54:18
chr1	186276074	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:124:72:18
chr1	186276075	.	T	.	.	LowMQ	END=186276076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:51:18
chr1	186276077	.	C	.	.	LowMQ	END=186276080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:63:18
chr1	186276081	.	G	.	.	LowMQ	END=186276082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:54:18
chr1	186276083	.	A	.	.	LowMQ	END=186276085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:36:17
chr1	186276086	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:101:48:17
chr1	186276087	.	T	.	.	LowMQ	END=186276088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:30:17
chr1	186276089	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:99:42:17
chr1	186276090	.	A	.	.	LowGQX;LowMQ	END=186276091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:21:17
chr1	186276092	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:95:39:17
chr1	186276093	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:92:15:17
chr1	186276094	.	A	.	.	LowMQ	END=186276095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:36:17
chr1	186276096	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:84:27:17
chr1	186276097	.	A	.	.	LowMQ	END=186276098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:33:17
chr1	186276099	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:85:18:17
chr1	186276100	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:86:24:17
chr1	186276101	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:87:36:17
chr1	186276102	.	C	.	.	LowGQX;LowMQ	END=186276104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:21:17
chr1	186276105	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:72:6:18
chr1	186276106	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:67:18:18
chr1	186276107	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:61:30:19
chr1	186276108	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:61:21:19
chr1	186276109	.	C	.	.	LowGQX	END=186276111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:21:20
chr1	186276112	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:59:12:20
chr1	186276113	.	C	.	.	LowGQX	END=186276116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:24:20
chr1	186276117	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:57:15:21
chr1	186276118	.	A	.	.	PASS	END=186276119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:33:20
chr1	186276120	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:58:0:21
chr1	186276121	.	A	.	.	PASS	END=186276124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:30:20
chr1	186276125	.	C	.	.	LowGQX	END=186276127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:24:21
chr1	186276128	.	A	.	.	LowGQX;LowMQ	END=186276130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:24:19
chr1	186276131	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:68:36:20
chr1	186276132	.	T	.	.	LowGQX;LowMQ	END=186276133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:24:18
chr1	186276134	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:71:33:18
chr1	186276135	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:72:21:18
chr1	186276136	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:75:36:19
chr1	186276137	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:72:15:17
chr1	186276138	.	C	.	.	LowMQ	END=186276139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:33:18
chr1	186276140	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:79:45:17
chr1	186276141	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:79:21:17
chr1	186276142	.	A	.	.	LowMQ	END=186276143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:42:16
chr1	186276144	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:88:18:15
chr1	186276145	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:92:33:15
chr1	186276146	.	C	.	.	LowMQ	END=186276148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:48:16
chr1	186276149	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:92:33:16
chr1	186276150	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:93:27:16
chr1	186276151	.	G	.	.	LowMQ	END=186276152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:33:16
chr1	186276153	.	G	.	.	LowMQ	END=186276154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:45:17
chr1	186276155	.	C	.	.	LowMQ	END=186276158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:57:18
chr1	186276159	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:90:36:18
chr1	186276160	.	C	.	.	LowMQ	END=186276161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:54:18
chr1	186276162	.	C	.	.	PASS	END=186276167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:60:20
chr1	186276168	.	C	.	.	PASS	END=186276169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:51:20
chr1	186276170	.	C	.	.	PASS	END=186276174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:69:20
chr1	186276175	.	A	.	.	PASS	END=186276182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:54:22
chr1	186276183	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:48:23
chr1	186276184	.	C	.	.	PASS	END=186276188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:60:23
chr1	186276189	.	T	.	.	PASS	END=186276190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:45:22
chr1	186276191	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:60:24
chr1	186276192	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:62:27:24
chr1	186276193	.	C	.	.	PASS	END=186276197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:48:23
chr1	186276198	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:67:39:25
chr1	186276199	.	G	.	.	PASS	END=186276202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:57:25
chr1	186276203	.	C	.	.	PASS	END=186276208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:72:25
chr1	186276209	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:82:63:27
chr1	186276210	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:84:90:27
chr1	186276211	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:83:62:27
chr1	186276212	.	C	.	.	PASS	END=186276224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:87:28
chr1	186276225	.	G	.	.	PASS	END=186276247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:32
chr1	186276248	.	A	.	.	PASS	END=186276265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:81:30
chr1	186276266	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:64:69:31
chr1	186276267	.	G	.	.	PASS	END=186276268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:51:31
chr1	186276269	.	A	.	.	PASS	END=186276278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:66:30
chr1	186276279	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:63:34
chr1	186276280	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:48:35
chr1	186276281	.	C	.	.	PASS	END=186276285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:69:34
chr1	186276286	.	C	.	.	PASS	END=186276290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:96:36
chr1	186276291	.	A	.	44.95	LowGQX	DP=62;MQ=36;MQ0=4	GT:AD:DP:GQ:MQ:GQX	0/0:45:62:14.95:36:15
chr1	186276292	.	G	.	.	PASS	END=186276305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:36
chr1	186276306	.	T	.	.	PASS	END=186276307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:36:41
chr1	186276308	.	C	.	.	PASS	END=186276311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:75:39
chr1	186276312	.	C	.	.	PASS	END=186276315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:93:37
chr1	186276316	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:54:37
chr1	186276317	.	A	.	.	PASS	END=186276320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:81:35
chr1	186276321	.	T	.	.	PASS	END=186276322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:57:33
chr1	186276323	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:75:33
chr1	186276324	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:51:33
chr1	186276325	.	C	.	.	PASS	END=186276326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:69:33
chr1	186276327	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:57:20:32
chr1	186276328	.	A	.	.	PASS	END=186276329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:66:32
chr1	186276330	.	T	.	.	PASS	END=186276338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:45:24
chr1	186276339	.	G	.	.	PASS	END=186276340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:36:22
chr1	186276341	.	A	.	.	LowGQX;LowMQ	END=186276344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:21:17
chr1	186276345	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:73:15:17
chr1	186276346	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:76:21:17
chr1	186276347	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:77:30:17
chr1	186276348	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:77:15:17
chr1	186276349	.	C	.	.	LowGQX;LowMQ	END=186276352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:24:16
chr1	186276353	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:74:30:16
chr1	186276354	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:73:1:16
chr1	186276355	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:73:18:16
chr1	186276356	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:89:45:18
chr1	186276357	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:90:30:19
chr1	186276358	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:95:1:19
chr1	186276359	.	C	.	.	LowMQ	END=186276361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:45:19
chr1	186276362	.	A	.	.	LowMQ	END=186276364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:36:19
chr1	186276365	.	A	.	.	PASS	END=186276370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:51:20
chr1	186276371	.	C	.	.	PASS	END=186276374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:60:23
chr1	186276375	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:89:36:25
chr1	186276376	.	A	.	.	PASS	END=186276377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:87:26
chr1	186276378	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:89:63:28
chr1	186276379	.	A	.	.	PASS	END=186276380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:93:28
chr1	186276381	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:92:75:29
chr1	186276382	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:94:17:29
chr1	186276383	.	C	.	.	PASS	END=186276414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:84:26
chr1	186276415	.	C	.	.	PASS	END=186276431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:79:22
chr1	186276432	.	C	.	.	PASS	END=186276443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:29
chr1	186276444	.	C	.	.	PASS	END=186276482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:38
chr1	186276483	.	T	.	.	PASS	END=186276511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:38
chr1	186276512	.	C	.	.	PASS	END=186276525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:86:32
chr1	186276526	.	G	.	.	PASS	END=186276542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:27
chr1	186276543	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:133:57:26
chr1	186276544	.	C	.	.	PASS	END=186276550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:84:24
chr1	186276551	.	A	.	.	PASS	END=186276552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:64:24
chr1	186276553	.	C	.	.	PASS	END=186276554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:25
chr1	186276555	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:115:60:24
chr1	186276556	.	G	.	.	PASS	END=186276557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:24
chr1	186276558	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:115:60:24
chr1	186276559	.	C	.	.	PASS	END=186276561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:87:24
chr1	186276562	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:104:60:24
chr1	186276563	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:104:81:24
chr1	186276564	.	C	.	.	PASS	END=186276565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:42:24
chr1	186276566	.	C	.	.	PASS	END=186276568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:69:25
chr1	186276569	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:98:96:25
chr1	186276570	.	C	.	.	PASS	END=186276571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:51:24
chr1	186276572	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:78:84:25
chr1	186276573	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:74:39:25
chr1	186276574	.	A	G	52.86	LowQD;SB	BaseQRankSum=-2.337;DP=63;Dels=0.00;FS=7.782;HRun=1;HaplotypeScore=26.5137;MQ=23;MQ0=20;MQRankSum=2.536;QD=0.84;ReadPosRankSum=3.762;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,11:63:82.85:83,0,248:23:53:0.200
chr1	186276575	.	A	.	.	PASS	END=186276576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:33:24
chr1	186276577	.	C	.	.	PASS	END=186276578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:45:24
chr1	186276579	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:49:27:24
chr1	186276580	.	G	.	.	PASS	END=186276581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:39:25
chr1	186276582	.	C	.	48	LowGQX	DP=53;MQ=24;MQ0=16	GT:AD:DP:GQ:MQ:GQX	0/0:42:53:18:24:18
chr1	186276583	.	C	.	.	PASS	END=186276584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:42:24
chr1	186276585	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:54:2:24
chr1	186276586	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:39:24
chr1	186276587	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:51:24
chr1	186276588	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:49:21:24
chr1	186276589	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:39:23
chr1	186276590	.	C	.	.	PASS	END=186276593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:42:23
chr1	186276594	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:33:22
chr1	186276595	.	A	.	.	PASS	END=186276597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:51:22
chr1	186276598	.	G	.	.	PASS	END=186276599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:33:22
chr1	186276600	.	G	.	.	PASS	END=186276603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:45:23
chr1	186276604	.	G	.	.	PASS	END=186276610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:60:28
chr1	186276611	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:68:84:31
chr1	186276612	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:57:31
chr1	186276613	.	A	.	.	PASS	END=186276614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:75:31
chr1	186276615	.	T	.	.	PASS	END=186276616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:63:34
chr1	186276617	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:96:35
chr1	186276618	.	C	.	.	PASS	END=186276622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:72:35
chr1	186276623	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:99:40
chr1	186276624	.	A	.	87.13	PASS	DP=55;MQ=40;MQ0=4	GT:AD:DP:GQ:MQ:GQX	0/0:38:55:57.13:40:57
chr1	186276625	.	C	.	.	PASS	END=186276639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:84:40
chr1	186276640	.	A	.	.	PASS	END=186276645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:78:46
chr1	186276646	.	A	.	102.15	PASS	DP=68;MQ=47;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:52:68:72.16:47:72
chr1	186276647	.	A	.	.	PASS	END=186276660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:48
chr1	186276661	.	A	G	464.59	LowGQ;LowGQX	BaseQRankSum=-1.458;DP=66;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=52.4687;MQ=50;MQ0=0;MQRankSum=1.769;QD=7.04;ReadPosRankSum=3.269;SB=-181.95	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:8,39:66:27.50:495,0,28:50:28:0.830
chr1	186276662	.	C	.	.	PASS	END=186276677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:78:50
chr1	186276678	.	C	.	6.72	LowGQX	DP=67;MQ=52;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:53:67:0.02:52:0
chr1	186276679	.	C	.	.	PASS	END=186276696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:89:51
chr1	186276697	.	A	.	52.59	LowGQX	DP=72;MQ=52;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:52:72:22.59:52:23
chr1	186276698	.	C	.	.	PASS	END=186276707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:52
chr1	186276708	.	C	.	.	PASS	END=186276710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:53
chr1	186276711	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:60:54
chr1	186276712	.	C	.	.	PASS	END=186276717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:53
chr1	186276718	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:72:54
chr1	186276719	.	A	.	.	PASS	END=186276721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:54
chr1	186276722	.	T	.	.	PASS	END=186276723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:48:54
chr1	186276724	.	A	.	93.13	PASS	DP=45;MQ=55;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:31:45:63.13:55:63
chr1	186276725	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:99:55
chr1	186276726	.	G	.	87.15	PASS	DP=45;MQ=55;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:32:45:57.16:55:57
chr1	186276727	.	C	.	.	PASS	END=186276738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:55
chr1	186276739	.	G	.	29.59	LowGQX	DP=48;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:34:48:2.81:56:3
chr1	186276740	.	A	.	.	PASS	END=186276745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:54
chr1	186276746	.	T	.	.	PASS	END=186276747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:48:54
chr1	186276748	.	G	.	.	PASS	END=186276761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:53
chr1	186276762	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:75:53
chr1	186276763	.	G	.	117.25	PASS	DP=58;MQ=53;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:46:58:87.25:53:87
chr1	186276764	.	A	.	.	PASS	END=186276770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:87:53
chr1	186276771	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:66:53
chr1	186276772	.	G	.	.	PASS	END=186276781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:51
chr1	186276782	.	C	.	.	PASS	END=186276793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:53
chr1	186276794	.	T	C	5.13	LowGQX;LowQD;SB	BaseQRankSum=-1.915;DP=65;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=45.8950;MQ=54;MQ0=0;MQRankSum=-0.545;QD=0.08;ReadPosRankSum=1.737;SB=-6.05	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,8:65:33.54:34,0,1201:54:5:0.154
chr1	186276795	.	C	.	.	PASS	END=186276809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:54
chr1	186276810	.	T	.	135.26	PASS	DP=80;MQ=56;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:60:80:99:56:99
chr1	186276811	.	G	.	.	PASS	END=186276820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:56
chr1	186276821	.	C	.	.	PASS	END=186276831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:57
chr1	186276832	.	C	.	.	PASS	END=186276857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:57
chr1	186276858	.	C	.	.	PASS	END=186276877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:55
chr1	186276878	.	C	.	.	PASS	END=186276901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:49
chr1	186276902	.	C	.	.	PASS	END=186276962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:271:99:44
chr1	186276963	.	T	.	.	PASS	END=186276980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:45
chr1	186276981	.	A	.	234.58	PASS	DP=213;MQ=47;MQ0=6	GT:AD:DP:GQ:MQ:GQX	0/0:168:213:99:47:99
chr1	186276982	.	G	.	.	PASS	END=186277032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:46
chr1	186277033	.	C	.	.	PASS	END=186277051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:47
chr1	186277052	.	C	.	.	PASS	END=186277087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:48
chr1	186277088	.	G	C	5262.91	PASS	BaseQRankSum=1.662;DP=199;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=89.5301;MQ=55;MQ0=2;MQRankSum=-0.589;QD=26.45;ReadPosRankSum=-0.237;SB=-2831.36	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,198:199:99:5263,406,0:55:99:0.995
chr1	186277089	.	T	.	.	PASS	END=186277108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:54
chr1	186277109	.	C	.	.	PASS	END=186277117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:266:99:54
chr1	186277118	.	G	.	376	PASS	DP=284;MQ=54;MQ0=7	GT:AD:DP:GQ:MQ:GQX	0/0:227:284:99:54:99
chr1	186277119	.	G	.	.	PASS	END=186277136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:284:99:50
chr1	186277137	.	T	.	.	PASS	END=186277190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:306:99:48
chr1	186277191	.	G	.	.	PASS	END=186277241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:46
chr1	186277242	.	T	.	.	PASS	END=186277276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:46
chr1	186277277	.	G	A	56.77	LowQD;SB	BaseQRankSum=-3.872;DP=190;Dels=0.00;FS=20.381;HRun=0;HaplotypeScore=90.4838;MQ=51;MQ0=2;MQRankSum=-2.418;QD=0.30;ReadPosRankSum=0.159;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:129,28:190:86.76:87,0,2186:51:57:0.178
chr1	186277278	.	G	.	.	PASS	END=186277305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:52
chr1	186277306	.	G	.	.	PASS	END=186277316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:258:99:54
chr1	186277317	.	A	C	15.44	LowGQX;LowQD;SB	BaseQRankSum=-6.601;DP=272;Dels=0.00;FS=30.399;HRun=2;HaplotypeScore=122.0877;MQ=54;MQ0=2;MQRankSum=-2.165;QD=0.06;ReadPosRankSum=-1.623;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:205,66:272:45.30:45,0,4275:54:15:0.244
chr1	186277318	.	C	.	.	PASS	END=186277347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:262:99:54
chr1	186277348	.	G	.	.	PASS	END=186277594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:314:99:57
chr1	186277595	.	C	.	.	PASS	END=186277684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:263:99:60
chr1	186277685	.	C	.	.	PASS	END=186277735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	186277736	.	C	.	.	PASS	END=186277759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	186277760	.	C	.	.	PASS	END=186277803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	186277804	.	G	.	.	PASS	END=186277873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	186277874	.	A	.	.	PASS	END=186277977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	186277978	.	G	.	.	PASS	END=186277988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	186277989	.	A	G	2193.38	PASS	DP=93;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=8.5750;MQ=60;MQ0=0;QD=23.58;SB=-754.16	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,91:93:99:2226,175,0:60:99:1.000
chr1	186277990	.	A	.	.	PASS	END=186278039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	186278040	.	C	.	.	PASS	END=186278064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	186278065	.	A	.	.	PASS	END=186278086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:92:60
chr1	186278087	.	C	.	.	PASS	END=186278141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	186278142	.	A	.	.	PASS	END=186278147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	186278148	.	T	.	.	PASS	END=186278160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	186278161	.	A	.	.	PASS	END=186278167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	186278168	.	A	.	.	PASS	END=186278173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr1	186278174	.	T	.	.	PASS	END=186278181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	186278182	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:2:60
chr1	186278183	.	C	.	.	PASS	END=186278190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	186278191	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	186278192	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:0:60
chr1	186278193	.	C	.	.	LowGQX	END=186278209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	186278210	.	C	.	.	LowGQX	END=186278216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	186278217	.	G	.	.	LowGQX	END=186278227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	186278228	.	C	.	.	LowGQX	END=186278232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	186278233	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	186278234	.	T	.	.	LowGQX	END=186278240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	186278241	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	186278242	.	C	.	.	LowGQX	END=186278245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	186278246	.	G	.	.	LowGQX	END=186278249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	186278250	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	186278251	.	A	.	.	LowGQX	END=186278259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	186278260	.	C	.	.	LowGQX	END=186278266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	186278267	.	T	.	.	LowGQX	END=186278274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	186278275	.	A	.	.	LowGQX	END=186278299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	186278300	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	186278301	.	A	.	.	LowGQX	END=186278323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	186278874	.	G	.	.	PASS	END=186279015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	186279016	.	A	.	.	PASS	END=186279053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:96:60
chr1	186280115	.	T	.	.	PASS	END=186280119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	186280120	.	G	.	.	PASS	END=186280126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	186280127	.	C	.	.	PASS	END=186280175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	186280176	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:54:60
chr1	186280177	.	T	.	.	PASS	END=186280207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:77:60
chr1	186280208	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:72:60
chr1	186280209	.	A	.	.	PASS	END=186280270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	186280271	.	G	.	.	PASS	END=186280277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	186280278	.	T	.	.	PASS	END=186280295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	186280296	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:39:60
chr1	186280297	.	T	.	.	PASS	END=186280341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	186280342	.	T	.	.	PASS	END=186280353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	186280521	.	A	.	.	PASS	END=186280530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr1	186280531	.	T	.	.	PASS	END=186280564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	186280565	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:75:60
chr1	186280566	.	T	.	.	PASS	END=186280599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:77:60
chr1	186280600	.	A	.	.	PASS	END=186280694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	186280695	.	A	.	.	PASS	END=186280707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	186280708	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:66:60
chr1	186280709	.	T	.	.	PASS	END=186280738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	186280739	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:71:60
chr1	186280740	.	A	.	.	PASS	END=186280749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	186280750	.	A	.	.	PASS	END=186280766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	186280767	.	A	.	.	PASS	END=186280779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	186281256	.	G	.	.	PASS	END=186281290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	186281291	.	T	.	.	PASS	END=186281385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	186281386	.	A	.	.	PASS	END=186281404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	186281405	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:57:60
chr1	186281406	.	A	.	.	PASS	END=186281440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	186281441	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:70:60
chr1	186281442	.	C	.	.	PASS	END=186281450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	186281451	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:61:60
chr1	186281452	.	A	.	.	PASS	END=186281477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:80:60
chr1	186281478	.	C	.	.	PASS	END=186281495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	186281496	.	A	.	.	PASS	END=186281516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	186281517	.	T	.	.	PASS	END=186281555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	186281850	.	T	.	.	PASS	END=186281892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	186281893	.	A	.	.	PASS	END=186282035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:85:60
chr1	186282036	.	T	.	.	PASS	END=186282055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	186282056	.	A	.	.	PASS	END=186282077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	186282762	.	T	.	.	PASS	END=186282782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr1	186282783	.	A	.	.	PASS	END=186282802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	186282803	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:60
chr1	186282804	.	T	.	.	PASS	END=186282816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	186282817	.	A	.	.	PASS	END=186282834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	186282835	.	G	.	.	PASS	END=186282912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	186282913	.	T	.	.	PASS	END=186282919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	186282920	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:45:60
chr1	186282921	.	A	.	.	PASS	END=186282961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	186283081	.	G	.	.	PASS	END=186283095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	186283096	.	A	.	.	PASS	END=186283121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	186283122	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:39:60
chr1	186283123	.	T	.	.	PASS	END=186283138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	186283139	.	T	.	.	PASS	END=186283149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	186283150	.	G	.	.	PASS	END=186283155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	186283156	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:0:60
chr1	186283157	.	A	.	.	LowGQX	END=186283158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	186283159	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	186283160	.	T	.	.	LowGQX	END=186283164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	186283165	.	A	.	.	LowGQX	END=186283166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	186283167	.	G	.	.	LowGQX	END=186283180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	186283759	.	A	.	.	LowGQX	END=186283763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186283764	.	T	.	.	LowGQX	.	GT	./.
chr1	186283765	.	C	.	.	LowGQX	END=186283805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186283806	.	T	.	.	LowGQX	.	GT	./.
chr1	186283807	.	T	.	.	LowGQX	END=186283824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186283825	.	T	.	.	LowGQX	.	GT	./.
chr1	186283826	.	C	.	.	LowGQX	END=186283853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186283854	.	T	.	.	LowGQX	END=186283858	GT	./.
chr1	186286562	.	C	.	.	LowGQX	END=186286642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186286643	.	C	.	.	LowGQX	END=186286734	GT	./.
chr1	186287577	.	A	.	.	LowGQX	END=186287737	GT	./.
chr1	186287863	.	A	.	.	LowGQX	END=186287959	GT	./.
chr1	186287960	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186287961	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	186287962	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186289442	.	A	.	.	LowGQX	END=186289552	GT	./.
chr1	186291388	.	C	.	.	LowGQX	END=186291547	GT	./.
chr1	186291635	.	T	.	.	LowGQX	END=186291734	GT	./.
chr1	186292805	.	G	.	.	LowGQX	END=186293015	GT	./.
chr1	186294892	.	T	.	.	LowGQX	END=186294967	GT	./.
chr1	186294968	.	G	.	.	LowGQX	END=186294980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186294981	.	A	.	.	LowGQX	.	GT	./.
chr1	186294982	.	C	.	.	LowGQX	END=186294991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186295234	.	A	.	.	LowGQX	END=186295369	GT	./.
chr1	186296590	.	A	.	.	LowGQX	END=186296794	GT	./.
chr1	186300622	.	T	.	.	LowGQX	END=186300721	GT	./.
chr1	186301325	.	A	.	.	LowGQX	END=186301504	GT	./.
chr1	186302252	.	A	.	.	LowGQX	END=186302528	GT	./.
chr1	186303455	.	A	.	.	LowGQX	END=186303552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186303553	.	T	.	.	LowGQX	END=186303667	GT	./.
chr1	186304181	.	T	.	.	LowGQX	END=186304280	GT	./.
chr1	186304468	.	A	.	.	LowGQX	END=186304677	GT	./.
chr1	186305626	.	A	.	.	LowGQX	END=186305828	GT	./.
chr1	186306143	.	A	.	.	LowGQX	END=186306240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186306241	.	A	.	.	LowGQX	END=186306290	GT	./.
chr1	186307163	.	A	.	.	LowGQX	END=186307377	GT	./.
chr1	186308772	.	A	.	.	LowGQX	END=186308775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186308776	.	T	.	.	LowGQX	.	GT	./.
chr1	186308777	.	G	.	.	LowGQX	END=186308798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186308799	.	C	.	.	LowGQX	.	GT	./.
chr1	186308800	.	A	.	.	LowGQX	END=186308802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186308803	.	T	.	.	LowGQX	END=186308827	GT	./.
chr1	186308828	.	T	.	.	LowGQX	END=186308894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186308895	.	T	.	.	LowGQX	.	GT	./.
chr1	186308896	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186308897	.	A	.	.	LowGQX	.	GT	./.
chr1	186308898	.	C	.	.	LowGQX	END=186308906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186310158	.	A	.	.	LowGQX	END=186310293	GT	./.
chr1	186310382	.	A	.	.	LowGQX	END=186310523	GT	./.
chr1	186312456	.	A	.	.	LowGQX	END=186312607	GT	./.
chr1	186313036	.	A	.	.	LowGQX	END=186313094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186313095	.	A	.	.	LowGQX	END=186313224	GT	./.
chr1	186313505	.	A	.	.	LowGQX	END=186313678	GT	./.
chr1	186313679	.	T	.	.	LowGQX	END=186313712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186314710	.	A	.	.	LowGQX	END=186314830	GT	./.
chr1	186315265	.	A	.	.	LowGQX	END=186315421	GT	./.
chr1	186316422	.	A	.	.	LowGQX	END=186316592	GT	./.
chr1	186319353	.	A	.	.	LowGQX	END=186319379	GT	./.
chr1	186319380	.	A	.	.	LowGQX	END=186319396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186319397	.	C	.	.	LowGQX	.	GT	./.
chr1	186319398	.	C	.	.	LowGQX	END=186319402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186319403	.	T	.	.	LowGQX	.	GT	./.
chr1	186319404	.	A	.	.	LowGQX	END=186319522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186320460	.	A	.	.	LowGQX	END=186320604	GT	./.
chr1	186321066	.	A	.	.	LowGQX	END=186321244	GT	./.
chr1	186322818	.	A	.	.	LowGQX	END=186322984	GT	./.
chr1	186324510	.	A	.	.	LowGQX	END=186324692	GT	./.
chr1	186324725	.	G	.	.	LowGQX	END=186324902	GT	./.
chr1	186325416	.	A	.	.	LowGQX	END=186325583	GT	./.
chr1	186326525	.	T	.	.	LowGQX	END=186326618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186326619	.	T	.	.	LowGQX	.	GT	./.
chr1	186326620	.	C	.	.	LowGQX	END=186326628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186326629	.	T	.	.	LowGQX	END=186326757	GT	./.
chr1	186327673	.	A	.	.	LowGQX	END=186327832	GT	./.
chr1	186328859	.	A	.	.	LowGQX	END=186329188	GT	./.
chr1	186329401	.	T	.	.	LowGQX	END=186329500	GT	./.
chr1	186329855	.	C	.	.	LowGQX	END=186330039	GT	./.
chr1	186330748	.	A	.	.	LowGQX	END=186330847	GT	./.
chr1	186330912	.	G	.	.	LowGQX	END=186331011	GT	./.
chr1	186331417	.	T	.	.	LowGQX	END=186331567	GT	./.
chr1	186331967	.	A	.	.	LowGQX	END=186332156	GT	./.
chr1	186332422	.	G	.	.	LowGQX	END=186332579	GT	./.
chr1	186337016	.	A	.	.	LowGQX	END=186337018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186337019	.	T	.	.	LowGQX	END=186337116	GT	./.
chr1	186340089	.	A	.	.	LowGQX	END=186340108	GT	./.
chr1	186340109	.	G	.	.	LowGQX	END=186340188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186342489	.	A	.	.	LowGQX	END=186342597	GT	./.
chr1	186344008	.	A	.	.	LowGQX	.	GT	./.
chr1	186344009	.	C	.	.	LowGQX	END=186344058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186344059	.	G	.	.	LowGQX	.	GT	./.
chr1	186344060	.	G	.	.	LowGQX	END=186344066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186344067	.	G	.	.	LowGQX	.	GT	./.
chr1	186344068	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186344069	.	T	.	.	LowGQX	END=186344318	GT	./.
chr1	186344676	.	A	.	.	LowGQX	END=186344775	GT	./.
chr1	186348917	.	A	.	.	LowGQX	END=186349016	GT	./.
chr1	186352153	.	G	.	.	LowGQX	END=186352288	GT	./.
chr1	186355059	.	C	.	.	LowGQX	END=186355217	GT	./.
chr1	186357573	.	G	.	.	LowGQX	END=186357680	GT	./.
chr1	186358629	.	C	.	.	LowGQX	END=186358682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186358683	.	T	.	.	LowGQX	END=186358787	GT	./.
chr1	186359802	.	A	.	.	LowGQX	END=186359983	GT	./.
chr1	186360767	.	T	.	.	LowGQX	END=186360925	GT	./.
chr1	186363008	.	A	.	.	LowGQX	END=186363162	GT	./.
chr1	186367444	.	G	.	.	LowGQX	END=186367573	GT	./.
chr1	186368081	.	T	.	.	LowGQX	END=186368180	GT	./.
chr1	186368290	.	G	.	.	LowGQX	END=186368323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186368324	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	186368325	.	A	.	.	LowGQX	END=186368336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	186368337	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	186368338	.	A	.	.	LowGQX	END=186368372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	186368373	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	186368374	.	T	.	.	LowGQX	END=186368389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	186370137	.	G	.	.	LowGQX	END=186370312	GT	./.
chr1	186375214	.	G	.	.	LowGQX	END=186375283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	186375284	.	T	.	.	LowGQX	END=186375400	GT	./.
chr1	186386625	.	A	.	.	LowGQX	END=186386786	GT	./.
chr1	186388125	.	T	.	.	LowGQX	END=186388224	GT	./.
chr1	186413109	.	C	.	.	LowGQX	END=186413640	GT	./.
chr1	186415556	.	A	.	.	LowGQX	END=186415711	GT	./.
chr1	186418512	.	T	.	.	LowGQX	END=186418611	GT	./.
chr1	186643483	.	T	.	.	PASS	END=186643508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	186643509	.	T	.	.	PASS	END=186643534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	186643535	.	C	.	.	PASS	END=186643609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	186643610	.	T	.	.	PASS	END=186643672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	186643673	.	G	.	.	PASS	END=186643723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	186643724	.	A	.	.	PASS	END=186643809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	186643810	.	T	.	.	PASS	END=186643862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	186643863	.	T	.	.	PASS	END=186643874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	186643875	.	T	.	.	PASS	END=186643896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	186644349	.	A	.	.	PASS	END=186644425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	186644426	.	T	.	.	PASS	END=186644474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	186644475	.	G	.	.	PASS	END=186644496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	186644497	.	A	.	.	PASS	END=186644503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	186644504	.	G	.	.	PASS	END=186644529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr1	186644530	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:99:60
chr1	186645028	.	A	.	.	PASS	END=186645094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	186645095	.	A	.	.	PASS	END=186645161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	186645162	.	G	.	.	PASS	END=186645249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	186645250	.	T	.	.	PASS	END=186645310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	186645311	.	T	.	.	PASS	END=186645318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	186645597	.	A	.	.	PASS	END=186645604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	186645605	.	G	.	.	PASS	END=186645665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	186645666	.	C	.	.	PASS	END=186645831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	186645832	.	T	.	.	PASS	END=186645847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	186645957	.	A	.	.	PASS	END=186646018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	186646019	.	A	.	.	PASS	END=186646056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	186646779	.	A	.	.	PASS	END=186646808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	186646809	.	G	.	.	PASS	END=186646826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	186646827	.	G	.	.	PASS	END=186646967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	186646968	.	A	.	.	PASS	END=186646978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	186647391	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:54:60
chr1	186647392	.	C	.	.	PASS	END=186647399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	186647400	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:60:60
chr1	186647401	.	C	.	.	PASS	END=186647431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	186647432	.	G	.	.	PASS	END=186647445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	186647446	.	G	.	.	PASS	END=186647526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:93:60
chr1	186647527	.	T	.	.	PASS	END=186647538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	186648188	.	A	.	.	PASS	END=186648235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	186648236	.	A	.	.	PASS	END=186648294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	186648295	.	T	.	.	PASS	END=186648335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	186648452	.	A	.	.	PASS	END=186648497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	186648498	.	C	.	.	PASS	END=186648530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	186648531	.	A	.	.	PASS	END=186648566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	186648567	.	T	.	.	PASS	END=186648572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	186649287	.	T	.	.	PASS	END=186649362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	186649363	.	G	.	.	PASS	END=186649417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	186649418	.	A	.	.	PASS	END=186649444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	186649445	.	C	.	.	PASS	END=186649446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	186823436	.	T	.	.	PASS	END=186823544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	186823545	.	C	.	.	PASS	END=186823557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	186823558	.	G	.	.	PASS	END=186823572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	186839516	.	G	.	.	PASS	END=186839603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	186839604	.	T	.	.	PASS	END=186839636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:58
chr1	186839637	.	T	.	.	PASS	END=186839653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:58
chr1	186839654	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:42:58
chr1	186839655	.	G	.	.	PASS	END=186839665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:58
chr1	186839666	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:62:60
chr1	186839667	.	T	.	.	PASS	END=186839686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	186839687	.	T	.	.	PASS	END=186839691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	186839692	.	T	.	.	PASS	END=186839699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	186839810	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr1	186839811	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	186839812	.	C	.	.	LowGQX	END=186839813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	186839814	.	G	.	.	LowGQX	END=186839833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:57
chr1	186839834	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:57
chr1	186839835	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:58
chr1	186839836	.	T	.	33	LowGQX	DP=4;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:58:3
chr1	186839837	.	A	.	.	LowGQX	END=186839838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:58
chr1	186839839	.	A	.	.	LowGQX	END=186839840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:58
chr1	186839841	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:58
chr1	186839842	.	A	.	33	LowGQX	DP=4;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:58:3
chr1	186839843	.	G	.	.	LowGQX	.	GT	./.
chr1	186839844	.	C	.	.	LowGQX	END=186839848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:59
chr1	186839849	.	G	.	.	LowGQX	END=186839852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:59
chr1	186839853	.	C	.	.	LowGQX	END=186839854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:59
chr1	186839855	.	A	.	.	LowGQX	END=186839858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:59
chr1	186839859	.	G	.	.	LowGQX	END=186839860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:59
chr1	186839861	.	G	A	101.28	LowGQ;LowGQX;SB	BaseQRankSum=-0.736;DP=8;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.8404;MQ=59;MQ0=0;MQRankSum=-0.736;QD=12.66;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,5:8:24.27:131,0,24:59:24:0.833
chr1	186839862	.	C	.	.	LowGQX	END=186839863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:59
chr1	186839864	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:59
chr1	186839865	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:59
chr1	186839866	.	T	.	.	LowGQX	END=186839873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:59
chr1	186839874	.	T	.	.	LowGQX	END=186839876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:59
chr1	186839877	.	G	.	.	LowGQX	END=186839878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:59
chr1	186839879	.	A	.	.	LowGQX	END=186839883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:59
chr1	186839884	.	T	.	.	LowGQX	END=186839906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	186839907	.	A	.	.	LowGQX	END=186839909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	186862092	.	A	.	.	PASS	END=186862131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	186862132	.	A	.	.	PASS	END=186862150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	186862151	.	C	.	.	PASS	END=186862183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	186862184	.	A	.	.	PASS	END=186862249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	186862250	.	T	.	.	PASS	END=186862306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	186862307	.	G	.	.	PASS	END=186862322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	186862323	.	T	.	.	PASS	END=186862342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	186863179	.	C	.	.	PASS	END=186863211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	186863212	.	T	.	.	PASS	END=186863228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	186863229	.	G	.	.	PASS	END=186863248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	186863249	.	A	.	.	PASS	END=186863326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	186863327	.	C	.	.	PASS	END=186863365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	186863366	.	A	.	.	PASS	END=186863379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	186863380	.	T	.	.	PASS	END=186863381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	186863382	.	A	.	.	PASS	END=186863391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	186863392	.	T	.	.	PASS	END=186863394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	186876046	.	T	.	.	PASS	END=186876056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	186876057	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:65:60
chr1	186876058	.	T	.	.	PASS	END=186876059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	186876060	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:66:60
chr1	186876061	.	T	.	.	PASS	END=186876068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	186876069	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:60
chr1	186876070	.	T	.	.	PASS	END=186876096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	186876097	.	G	.	.	PASS	END=186876185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	186880329	.	A	.	.	PASS	END=186880333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	186880334	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	186880335	.	C	.	.	PASS	END=186880363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	186880364	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:24:60
chr1	186880365	.	T	.	.	PASS	END=186880403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	186880404	.	T	.	.	PASS	END=186880466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	186880467	.	C	.	.	PASS	END=186880533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	186880534	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr1	186880535	.	T	.	.	PASS	END=186880563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:60
chr1	186880564	.	A	.	.	PASS	END=186880572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	186901844	.	T	.	.	PASS	END=186901872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	186901873	.	T	.	.	PASS	END=186902003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	186902004	.	A	.	.	PASS	END=186902027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	186902028	.	C	.	.	PASS	END=186902044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	186902045	.	T	.	.	PASS	END=186902082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	186908089	.	T	.	.	PASS	END=186908092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	186908093	.	G	.	.	PASS	END=186908131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	186908132	.	C	.	.	PASS	END=186908138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	186908139	.	G	.	.	PASS	END=186908163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	186908164	.	C	.	.	PASS	END=186908194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	186908195	.	A	.	.	PASS	END=186908293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	186908294	.	A	.	.	PASS	END=186908314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	186908315	.	T	.	.	PASS	END=186908334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	186908335	.	G	.	.	PASS	END=186908384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	186908385	.	C	T	898.94	PASS	BaseQRankSum=2.611;DP=70;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=8.6175;MQ=60;MQ0=0;MQRankSum=0.242;QD=12.84;ReadPosRankSum=0.242;SB=-57.22	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,32:70:99:929,0,1068:60:99:0.457
chr1	186908386	.	T	.	.	PASS	END=186908413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	186909061	.	C	.	.	PASS	END=186909111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	186909112	.	A	.	.	PASS	END=186909219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	186909220	.	T	.	.	PASS	END=186909262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	186909263	.	C	.	.	PASS	END=186909277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	186915718	.	G	.	.	PASS	END=186915792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	186915793	.	A	.	.	PASS	END=186915857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	186915858	.	G	.	.	PASS	END=186916065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	186916066	.	A	.	.	PASS	END=186916089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	186916090	.	T	.	.	PASS	END=186916116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	186916117	.	T	.	.	PASS	END=186916144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	186919738	.	T	.	.	PASS	END=186919762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	186919763	.	T	.	.	PASS	END=186919803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	186919804	.	A	.	.	PASS	END=186919911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	186925183	.	T	.	.	PASS	END=186925193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	186925194	.	T	C	1768.83	PASS	DP=57;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.8908;MQ=60;MQ0=0;QD=31.03;SB=-187.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,56:57:99:1802,141,0:60:99:1.000
chr1	186925195	.	A	.	.	PASS	END=186925219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	186925220	.	T	.	.	PASS	END=186925261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	186925262	.	C	.	.	PASS	END=186925406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	186925407	.	C	.	.	PASS	END=186925444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	186925445	.	T	.	.	PASS	END=186925468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	186925469	.	T	.	.	PASS	END=186925489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	186925490	.	T	.	.	PASS	END=186925514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	186925515	.	A	.	.	PASS	END=186925525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr1	186925526	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:36:60
chr1	186925527	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:75:60
chr1	186934490	.	A	.	.	PASS	END=186934513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	186934514	.	T	.	.	PASS	END=186934603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	186934604	.	T	.	.	PASS	END=186934637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	186934638	.	C	.	.	PASS	END=186934659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	186934660	.	G	.	.	PASS	END=186934708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	186934709	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:53:60
chr1	186934710	.	T	.	.	PASS	END=186934721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	186934722	.	C	.	.	PASS	END=186934742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	186934743	.	A	.	.	PASS	END=186934745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	186934746	.	A	.	.	PASS	END=186934749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	186934750	.	C	.	.	PASS	END=186934754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	186934755	.	T	.	.	LowGQX	END=186934761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	186934762	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	186934763	.	A	.	.	LowGQX	END=186934776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	186946674	.	A	.	.	PASS	END=186946728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	186946729	.	T	.	.	PASS	END=186946733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	186946734	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:46:60
chr1	186946735	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:99:60
chr1	186946736	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:66:60
chr1	186946737	.	G	.	.	PASS	END=186946772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	186946773	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:63:60
chr1	186946774	.	C	.	.	PASS	END=186946793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	186946794	.	T	.	.	PASS	END=186946816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	186946817	.	G	.	.	PASS	END=186946850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	186946851	.	G	.	.	PASS	END=186946911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	186946912	.	G	A	2679.82	PASS	DP=98;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9997;MQ=60;MQ0=0;QD=27.35;SB=-1579.06	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,98:98:99:2713,199,0:60:99:1.000
chr1	186946913	.	G	.	.	PASS	END=186946944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	186946945	.	C	.	.	PASS	END=186946969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	186946970	.	C	.	.	PASS	END=186946971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	186948396	.	A	.	.	PASS	END=186948427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	186948428	.	T	.	.	PASS	END=186948449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	186948450	.	T	.	.	PASS	END=186948559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	186948560	.	A	.	.	PASS	END=186948579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	186948580	.	C	.	.	PASS	END=186948590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	186948591	.	T	.	.	PASS	END=186948605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	186948606	.	T	.	.	PASS	END=186948623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:80:60
chr1	186948624	.	A	.	.	PASS	END=186948633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr1	186948634	.	T	.	.	PASS	END=186948643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	186948644	.	T	.	.	PASS	END=186948650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	186948651	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:13:60
chr1	186948652	.	G	.	.	PASS	END=186948655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	186957458	.	T	.	.	PASS	END=186957475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	186957476	.	C	.	.	PASS	END=186957540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	186957541	.	A	.	.	PASS	END=186957643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	186957644	.	A	.	.	PASS	END=186957677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	186957678	.	G	.	.	PASS	END=186957691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr1	187610517	.	T	.	.	LowGQX	END=187610616	GT	./.
chr1	187610750	.	G	.	.	LowGQX	END=187610882	GT	./.
chr1	187610883	.	G	.	.	LowGQX	END=187610918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	187610919	.	G	.	.	LowGQX	.	GT	./.
chr1	187610920	.	A	.	.	LowGQX	END=187610944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	187610945	.	A	.	.	LowGQX	.	GT	./.
chr1	187610946	.	G	.	.	LowGQX	END=187610954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	187610955	.	A	.	.	LowGQX	.	GT	./.
chr1	187610956	.	C	.	.	LowGQX	END=187610968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	187610969	.	A	.	.	LowGQX	.	GT	./.
chr1	187610970	.	C	.	.	LowGQX	END=187611008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067146	.	G	.	.	LowGQX	END=190067164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067165	.	T	.	.	LowGQX	.	GT	./.
chr1	190067166	.	C	.	.	LowGQX	END=190067169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067170	.	T	.	.	LowGQX	.	GT	./.
chr1	190067171	.	C	.	.	LowGQX	END=190067176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067177	.	C	.	.	LowGQX	.	GT	./.
chr1	190067178	.	C	.	.	LowGQX	END=190067199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067200	.	T	.	.	LowGQX	.	GT	./.
chr1	190067201	.	T	.	.	LowGQX	END=190067204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067205	.	C	.	.	LowGQX	.	GT	./.
chr1	190067206	.	G	.	.	LowGQX	END=190067207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067208	.	C	.	.	LowGQX	.	GT	./.
chr1	190067209	.	T	.	.	LowGQX	END=190067220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067221	.	T	.	.	LowGQX	.	GT	./.
chr1	190067222	.	G	.	.	LowGQX	END=190067236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067237	.	C	.	.	LowGQX	END=190067238	GT	./.
chr1	190067239	.	C	.	.	LowGQX	END=190067247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067248	.	A	.	.	LowGQX	END=190067296	GT	./.
chr1	190067297	.	G	.	.	LowGQX	END=190067324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067325	.	G	.	.	LowGQX	.	GT	./.
chr1	190067326	.	T	.	.	LowGQX	END=190067330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067331	.	G	.	.	LowGQX	.	GT	./.
chr1	190067332	.	A	.	.	LowGQX	END=190067335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067336	.	C	.	.	LowGQX	.	GT	./.
chr1	190067337	.	T	.	.	LowGQX	END=190067354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067355	.	T	.	.	LowGQX	.	GT	./.
chr1	190067356	.	G	.	.	LowGQX	END=190067368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067369	.	C	.	.	LowGQX	.	GT	./.
chr1	190067370	.	C	.	.	LowGQX	END=190067372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067373	.	A	.	.	LowGQX	.	GT	./.
chr1	190067374	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067375	.	T	.	.	LowGQX	END=190067376	GT	./.
chr1	190067377	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067378	.	A	.	.	LowGQX	END=190067379	GT	./.
chr1	190067380	.	G	.	.	LowGQX	END=190067392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067393	.	G	.	.	LowGQX	.	GT	./.
chr1	190067394	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067395	.	A	.	.	LowGQX	.	GT	./.
chr1	190067396	.	A	.	.	LowGQX	END=190067401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067402	.	G	.	.	LowGQX	.	GT	./.
chr1	190067403	.	G	.	.	LowGQX	END=190067407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067408	.	G	.	.	LowGQX	.	GT	./.
chr1	190067409	.	A	.	.	LowGQX	END=190067412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067413	.	G	.	.	LowGQX	.	GT	./.
chr1	190067414	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067415	.	T	.	.	LowGQX	.	GT	./.
chr1	190067416	.	T	.	.	LowGQX	END=190067418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067419	.	G	.	.	LowGQX	.	GT	./.
chr1	190067420	.	G	.	.	LowGQX	END=190067421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067422	.	T	.	.	LowGQX	.	GT	./.
chr1	190067423	.	C	.	.	LowGQX	END=190067426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067427	.	G	.	.	LowGQX	.	GT	./.
chr1	190067428	.	T	.	.	LowGQX	END=190067438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067439	.	G	.	.	LowGQX	.	GT	./.
chr1	190067440	.	C	.	.	LowGQX	END=190067443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067444	.	A	.	.	LowGQX	.	GT	./.
chr1	190067445	.	C	.	.	LowGQX	END=190067446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067447	.	C	.	.	LowGQX	END=190067470	GT	./.
chr1	190067471	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067472	.	G	.	.	LowGQX	.	GT	./.
chr1	190067473	.	C	.	.	LowGQX	END=190067486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067487	.	A	.	.	LowGQX	.	GT	./.
chr1	190067488	.	G	.	.	LowGQX	END=190067491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067492	.	C	.	.	LowGQX	.	GT	./.
chr1	190067493	.	A	.	.	LowGQX	END=190067500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067501	.	C	.	.	LowGQX	.	GT	./.
chr1	190067502	.	C	.	.	LowGQX	END=190067511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067512	.	T	.	.	LowGQX	.	GT	./.
chr1	190067513	.	A	.	.	LowGQX	END=190067514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067515	.	T	.	.	LowGQX	.	GT	./.
chr1	190067516	.	A	.	.	LowGQX	END=190067525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067526	.	A	.	.	LowGQX	.	GT	./.
chr1	190067527	.	T	.	.	LowGQX	END=190067532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067533	.	T	.	.	LowGQX	.	GT	./.
chr1	190067534	.	T	.	.	LowGQX	END=190067548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067549	.	T	.	.	LowGQX	.	GT	./.
chr1	190067550	.	G	.	.	LowGQX	END=190067576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067577	.	T	.	.	LowGQX	.	GT	./.
chr1	190067578	.	G	.	.	LowGQX	END=190067594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067595	.	C	.	.	LowGQX	.	GT	./.
chr1	190067596	.	C	.	.	LowGQX	END=190067616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067617	.	G	.	.	LowGQX	.	GT	./.
chr1	190067618	.	T	.	.	LowGQX	END=190067620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067621	.	A	.	.	LowGQX	END=190067923	GT	./.
chr1	190067924	.	C	.	.	LowGQX	END=190067963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190067964	.	G	.	.	LowGQX	.	GT	./.
chr1	190067965	.	A	.	.	LowGQX	END=190068016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190068017	.	C	.	.	LowGQX	.	GT	./.
chr1	190068018	.	T	.	.	LowGQX	END=190068027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190068028	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	190068029	.	A	.	.	LowGQX	END=190068045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190068046	.	A	.	.	LowGQX	.	GT	./.
chr1	190068047	.	T	.	.	LowGQX	END=190068074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190068075	.	G	.	.	LowGQX	END=190068078	GT	./.
chr1	190068079	.	C	.	.	LowGQX	END=190068087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190068088	.	G	.	.	LowGQX	.	GT	./.
chr1	190068089	.	G	.	.	LowGQX	END=190068090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190068091	.	G	.	.	LowGQX	.	GT	./.
chr1	190068092	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190068093	.	G	.	.	LowGQX	.	GT	./.
chr1	190068094	.	C	.	.	LowGQX	END=190068114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190068115	.	T	.	.	LowGQX	.	GT	./.
chr1	190068116	.	C	.	.	LowGQX	END=190068165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190068166	.	C	.	.	LowGQX	.	GT	./.
chr1	190068167	.	A	.	.	LowGQX	END=190068228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190068229	.	A	.	.	LowGQX	END=190068266	GT	./.
chr1	190129796	.	A	.	.	LowGQX	END=190130022	GT	./.
chr1	190195210	.	A	.	.	LowGQX	END=190195450	GT	./.
chr1	190203500	.	A	.	.	LowGQX	END=190203547	GT	./.
chr1	190203548	.	G	.	.	LowGQX	END=190203609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	190233982	.	A	.	.	LowGQX	END=190234212	GT	./.
chr1	190250688	.	A	.	.	LowGQX	END=190250738	GT	./.
chr1	190250739	.	G	.	.	LowGQX	END=190250740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190250741	.	T	.	.	LowGQX	.	GT	./.
chr1	190250742	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190250743	.	T	.	.	LowGQX	END=190250744	GT	./.
chr1	190250745	.	T	.	.	LowGQX	END=190250746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190250747	.	T	.	.	LowGQX	.	GT	./.
chr1	190250748	.	G	.	.	LowGQX	END=190250765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190250766	.	T	.	.	LowGQX	.	GT	./.
chr1	190250767	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190250768	.	G	.	.	LowGQX	.	GT	./.
chr1	190250769	.	A	.	.	LowGQX	END=190250799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190250800	.	T	.	.	LowGQX	END=190250801	GT	./.
chr1	190250802	.	A	.	.	LowGQX	END=190250882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190423783	.	A	.	.	LowGQX	END=190423938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	190423939	.	A	.	.	LowGQX	END=190424022	GT	./.
chr1	192127766	.	A	.	.	LowGQX	END=192127935	GT	./.
chr1	192128348	.	A	.	.	LowGQX	END=192128453	GT	./.
chr1	192129489	.	C	.	.	LowGQX	END=192129588	GT	./.
chr1	192150420	.	A	.	.	LowGQX	END=192150609	GT	./.
chr1	192153425	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	192153426	.	G	.	.	LowGQX	.	GT	./.
chr1	192153427	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	192153428	.	T	.	.	LowGQX	.	GT	./.
chr1	192153429	.	T	.	.	LowGQX	END=192153431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	192153432	.	C	.	.	LowGQX	.	GT	./.
chr1	192153433	.	C	.	.	LowGQX	END=192153435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	192153436	.	G	.	.	LowGQX	.	GT	./.
chr1	192153437	.	A	.	.	LowGQX	END=192153440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	192153441	.	T	.	.	LowGQX	END=192153578	GT	./.
chr1	192153579	.	G	.	.	LowGQX	END=192153686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	192312123	.	A	.	.	LowGQX	END=192312222	GT	./.
chr1	192316432	.	G	.	.	LowGQX	END=192316531	GT	./.
chr1	192321175	.	A	.	.	LowGQX	END=192321332	GT	./.
chr1	192321333	.	C	.	.	LowGQX	END=192321345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	192334989	.	T	.	.	LowGQX	END=192335308	GT	./.
chr1	192544921	.	C	.	.	LowGQX	END=192545061	GT	./.
chr1	192545406	.	C	.	.	LowGQX	END=192545505	GT	./.
chr1	192545885	.	T	.	.	LowGQX	END=192545984	GT	./.
chr1	192547350	.	A	.	.	LowGQX	END=192547581	GT	./.
chr1	192548265	.	A	.	.	LowGQX	END=192548464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	192613448	.	T	.	.	LowGQX	END=192613547	GT	./.
chr1	192617037	.	T	.	.	LowGQX	END=192617136	GT	./.
chr1	192627329	.	A	.	.	LowGQX	END=192627499	GT	./.
chr1	192628466	.	A	.	.	LowGQX	END=192628665	GT	./.
chr1	192778151	.	T	.	.	PASS	END=192778205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:90:60
chr1	192778206	.	A	.	.	PASS	END=192778270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	192778271	.	C	.	.	PASS	END=192778308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	192778309	.	C	.	.	PASS	END=192778325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	192778326	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:63:60
chr1	192778327	.	T	.	.	PASS	END=192778336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	192778337	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:63:60
chr1	192778338	.	G	.	.	PASS	END=192778343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	192778344	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:60:60
chr1	192778345	.	C	.	.	PASS	END=192778352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	192778353	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:74:60
chr1	192778354	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:36:60
chr1	192778355	.	A	.	.	PASS	END=192778357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr1	192778358	.	G	.	.	PASS	END=192778362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr1	192779245	.	C	.	.	PASS	END=192779266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	192779267	.	G	.	.	PASS	END=192779337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	192779338	.	T	.	.	PASS	END=192779433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	192779434	.	T	.	.	PASS	END=192779496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	192779497	.	C	.	.	PASS	END=192779527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	192779528	.	T	.	.	PASS	END=192779612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	192780060	.	T	.	.	PASS	END=192780077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:61
chr1	192780078	.	C	.	.	PASS	END=192780088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	192780088	.	GCT	G	2794.66	PASS	BaseQRankSum=0.703;DP=139;FS=0.000;HRun=0;HaplotypeScore=181.2946;MQ=61;MQ0=0;MQRankSum=1.906;QD=20.11;ReadPosRankSum=-1.611;SB=-809.21	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:67,71:139:99:2834,0,2647:61:99:0.514
chr1	192780089	.	C	.	216.58	PASS	DP=141;MQ=61;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:69:70:99:61:99
chr1	192780090	.	T	.	207.57	PASS	DP=141;MQ=61;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:68:70:99:61:99
chr1	192780091	.	C	.	.	PASS	END=192780113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	192780114	.	G	.	.	PASS	END=192780175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	192780176	.	C	.	.	PASS	END=192780264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	192780265	.	A	.	.	PASS	END=192780321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	192780322	.	A	.	.	PASS	END=192780328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	192780481	.	T	.	.	PASS	END=192780569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	192780570	.	G	.	.	PASS	END=192780615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	192780616	.	A	.	.	PASS	END=192780719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	192780720	.	T	.	.	PASS	END=192780747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	192780748	.	A	.	.	PASS	END=192780767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	192780768	.	T	.	.	PASS	END=192780777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	192985399	.	T	.	.	LowGQX	END=192985553	GT	./.
chr1	192987896	.	T	.	.	LowGQX	END=192987995	GT	./.
chr1	192989442	.	A	.	.	LowGQX	END=192989631	GT	./.
chr1	192990175	.	T	.	.	LowGQX	END=192990327	GT	./.
chr1	192992054	.	A	.	.	LowGQX	END=192992171	GT	./.
chr1	192992922	.	C	.	.	LowGQX	END=192993078	GT	./.
chr1	192996935	.	T	.	.	LowGQX	END=192997094	GT	./.
chr1	192997143	.	A	.	.	LowGQX	END=192997296	GT	./.
chr1	192998307	.	A	.	.	LowGQX	END=192998437	GT	./.
chr1	192998438	.	G	.	.	LowGQX	END=192998441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	192998499	.	T	.	.	LowGQX	.	GT	./.
chr1	192998500	.	A	.	.	LowGQX	END=192998598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	192998660	.	A	.	.	LowGQX	END=192998789	GT	./.
chr1	193018874	.	A	.	.	LowGQX	END=193018983	GT	./.
chr1	193020866	.	A	.	.	LowGQX	END=193020965	GT	./.
chr1	193028313	.	A	.	.	LowGQX	END=193028426	GT	./.
chr1	193028543	.	C	.	.	LowGQX	END=193028645	GT	./.
chr1	193028667	.	T	.	.	LowGQX	END=193028840	GT	./.
chr1	193028841	.	T	.	.	LowGQX	END=193028927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	193028928	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	193028929	.	G	.	.	LowGQX	END=193028986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	193028987	.	T	.	.	LowGQX	END=193029128	GT	./.
chr1	193038183	.	A	.	.	PASS	END=193038205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	193038206	.	A	.	.	PASS	END=193038248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	193038249	.	G	.	.	PASS	END=193038278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	193038279	.	G	.	.	PASS	END=193038313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	193038314	.	G	.	.	PASS	END=193038391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	193038392	.	G	.	.	PASS	END=193038491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	193038492	.	C	.	.	PASS	END=193038570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	193038571	.	C	.	.	PASS	END=193038642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	193038643	.	G	.	.	PASS	END=193038753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	193038754	.	T	.	.	PASS	END=193038766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	193039667	.	T	.	.	LowGQX	END=193039766	GT	./.
chr1	193044948	.	A	.	.	PASS	END=193045041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	193045042	.	T	.	.	PASS	END=193045136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	193045137	.	A	.	.	PASS	END=193045172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	193045589	.	T	.	.	PASS	END=193045611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	193045612	.	G	.	.	PASS	END=193045624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	193045625	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:39:60
chr1	193045626	.	A	.	.	PASS	END=193045630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	193045631	.	G	.	.	PASS	END=193045660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	193045661	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:66:60
chr1	193045662	.	T	.	.	PASS	END=193045671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	193045672	.	A	.	.	PASS	END=193045779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:98:60
chr1	193046041	.	A	.	.	PASS	END=193046046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	193046047	.	G	.	.	PASS	END=193046051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	193046052	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:72:60
chr1	193046053	.	A	.	.	PASS	END=193046101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	193046102	.	T	.	.	PASS	END=193046182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	193050492	.	A	.	.	PASS	END=193050588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	193050589	.	A	.	.	PASS	END=193050627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	193050628	.	A	.	.	PASS	END=193050661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	193051264	.	T	.	.	PASS	END=193051392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	193051393	.	T	.	.	PASS	END=193051406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	193051407	.	A	.	.	PASS	END=193051431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	193051650	.	G	.	.	PASS	END=193051684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	193051685	.	G	A	928.45	PASS	BaseQRankSum=0.131;DP=97;Dels=0.00;FS=0.829;HRun=2;HaplotypeScore=6.7334;MQ=60;MQ0=0;MQRankSum=-0.841;QD=9.57;ReadPosRankSum=0.594;SB=-534.48	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:52,43:97:99:958,0,1226:60:99:0.453
chr1	193051686	.	A	.	.	PASS	END=193051761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	193051762	.	T	.	.	PASS	END=193051785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	193051786	.	A	.	.	PASS	END=193051821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:87:60
chr1	193051822	.	T	.	.	PASS	END=193051837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:60
chr1	193051838	.	G	.	.	PASS	END=193051840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:75:60
chr1	193053707	.	A	.	.	PASS	END=193053737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	193053738	.	T	.	.	PASS	END=193053863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	193054076	.	T	.	.	PASS	END=193054140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	193054141	.	T	.	.	PASS	END=193054175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	193060689	.	A	.	.	PASS	END=193060722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr1	193060723	.	T	.	.	PASS	END=193060773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	193060774	.	T	.	.	PASS	END=193060832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	193060833	.	A	.	.	PASS	END=193060836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	193060837	.	T	.	.	PASS	END=193060845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	193060846	.	T	.	.	LowGQX	END=193060848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	193065753	.	C	.	.	LowGQX	END=193065891	GT	./.
chr1	193066712	.	A	.	.	LowGQX	END=193066892	GT	./.
chr1	193070193	.	A	.	.	LowGQX	END=193070352	GT	./.
chr1	193074351	.	C	.	.	LowGQX	END=193074401	GT	./.
chr1	193074402	.	C	.	.	LowGQX	END=193074403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074404	.	C	.	.	LowGQX	.	GT	./.
chr1	193074405	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074406	.	G	.	.	LowGQX	.	GT	./.
chr1	193074407	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074408	.	T	.	.	LowGQX	.	GT	./.
chr1	193074409	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074410	.	C	.	.	LowGQX	END=193074411	GT	./.
chr1	193074412	.	G	.	.	LowGQX	END=193074422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074423	.	A	.	.	LowGQX	END=193074424	GT	./.
chr1	193074425	.	C	.	.	LowGQX	END=193074426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074427	.	C	.	.	LowGQX	.	GT	./.
chr1	193074428	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074429	.	C	.	.	LowGQX	.	GT	./.
chr1	193074430	.	G	.	.	LowGQX	END=193074441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074442	.	A	.	.	LowGQX	.	GT	./.
chr1	193074443	.	G	.	.	LowGQX	END=193074450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074451	.	G	.	.	LowGQX	.	GT	./.
chr1	193074452	.	C	.	.	LowGQX	END=193074455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074456	.	G	.	.	LowGQX	.	GT	./.
chr1	193074457	.	C	.	.	LowGQX	END=193074460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074461	.	T	.	.	LowGQX	.	GT	./.
chr1	193074462	.	C	.	.	LowGQX	END=193074463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074464	.	T	.	.	LowGQX	.	GT	./.
chr1	193074465	.	G	.	.	LowGQX	END=193074466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074467	.	T	.	.	LowGQX	.	GT	./.
chr1	193074468	.	C	.	.	LowGQX	END=193074471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074472	.	A	.	.	LowGQX	.	GT	./.
chr1	193074473	.	C	.	.	LowGQX	END=193074474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074475	.	A	.	.	LowGQX	END=193074477	GT	./.
chr1	193074478	.	C	.	.	LowGQX	END=193074481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074482	.	T	.	.	LowGQX	.	GT	./.
chr1	193074483	.	C	.	.	LowGQX	END=193074492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074493	.	G	.	.	LowGQX	.	GT	./.
chr1	193074494	.	C	.	.	LowGQX	END=193074507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074508	.	A	.	.	LowGQX	.	GT	./.
chr1	193074509	.	T	.	.	LowGQX	END=193074512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074513	.	G	.	.	LowGQX	.	GT	./.
chr1	193074514	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193074645	.	A	.	.	LowGQX	END=193074770	GT	./.
chr1	193090827	.	G	.	.	LowGQX	END=193090986	GT	./.
chr1	193091280	.	G	.	.	PASS	END=193091289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	193091290	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:17:60
chr1	193091291	.	G	.	.	PASS	END=193091298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	193091299	.	G	.	.	PASS	END=193091304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	193091305	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:26:60
chr1	193091306	.	G	.	.	PASS	END=193091310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	193091311	.	C	.	.	PASS	END=193091324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	193091325	.	G	.	.	PASS	END=193091333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	193091334	.	G	.	.	PASS	END=193091337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	193091338	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr1	193091339	.	C	.	.	PASS	END=193091342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	193091343	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:54:60
chr1	193091344	.	T	.	.	PASS	END=193091360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	193091361	.	T	.	.	PASS	END=193091384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	193091385	.	G	.	.	PASS	END=193091474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:84:60
chr1	193091475	.	G	.	.	PASS	END=193091480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:93:60
chr1	193091481	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:76:60
chr1	193091482	.	G	.	.	PASS	END=193091500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	193091501	.	G	.	.	PASS	END=193091509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	193091510	.	G	.	.	PASS	END=193091512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	193094191	.	A	.	.	PASS	END=193094194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	193094195	.	T	.	.	PASS	END=193094197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	193094198	.	A	.	.	PASS	END=193094231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	193094232	.	A	.	.	PASS	END=193094266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	193094267	.	G	.	.	PASS	END=193094290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	193094291	.	T	.	.	PASS	END=193094353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	193094354	.	A	.	.	PASS	END=193094374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	193094375	.	T	C	855.97	PASS	BaseQRankSum=-0.097;DP=66;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.122;QD=12.97;ReadPosRankSum=-0.470;SB=-435.96	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,36:66:99:886,0,686:60:99:0.545
chr1	193094376	.	C	.	.	PASS	END=193094398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	193099253	.	T	.	.	PASS	END=193099257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	193099258	.	T	.	.	PASS	END=193099334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	193099335	.	A	.	.	PASS	END=193099361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	193099362	.	A	.	.	PASS	END=193099424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	193104470	.	A	.	.	PASS	END=193104531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	193104532	.	A	.	.	PASS	END=193104662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	193104663	.	A	.	.	PASS	END=193104683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	193104684	.	G	.	.	PASS	END=193104727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	193104728	.	A	.	.	PASS	END=193104764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	193104765	.	A	.	.	PASS	END=193104770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	193105572	.	G	.	.	LowGQX	END=193105723	GT	./.
chr1	193107164	.	C	.	.	PASS	END=193107287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	193107288	.	A	.	.	PASS	END=193107306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	193107307	.	A	.	.	PASS	END=193107343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	193107344	.	T	.	.	PASS	END=193107354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	193110929	.	T	.	.	PASS	END=193110932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	193110933	.	C	.	.	PASS	END=193110964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	193110965	.	A	.	.	PASS	END=193110971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	193110972	.	G	.	.	PASS	END=193110991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	193110992	.	A	.	.	PASS	END=193111012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	193111013	.	T	.	.	PASS	END=193111055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	193111056	.	A	.	.	PASS	END=193111101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	193111102	.	G	.	.	PASS	END=193111155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	193111156	.	T	.	.	PASS	END=193111173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	193111174	.	C	.	.	PASS	END=193111185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	193111186	.	G	.	.	PASS	END=193111213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	193111214	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:33:15:60
chr1	193111215	.	T	.	.	PASS	END=193111237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	193111238	.	A	.	.	PASS	END=193111243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	193111244	.	A	.	.	PASS	END=193111245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	193111246	.	A	.	.	LowGQX	END=193111247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	193116946	.	T	.	.	PASS	END=193117053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	193117054	.	C	.	.	PASS	END=193117083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	193117084	.	G	.	.	PASS	END=193117108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	193117109	.	A	.	.	PASS	END=193117146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	193119383	.	A	.	.	PASS	END=193119405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	193119406	.	A	.	.	PASS	END=193119449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:84:60
chr1	193119450	.	C	.	.	PASS	END=193119469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	193119470	.	G	.	.	PASS	END=193119504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	193119505	.	A	.	.	PASS	END=193119554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	193119555	.	T	.	.	PASS	END=193119563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	193121459	.	T	.	.	PASS	END=193121511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:91:60
chr1	193121512	.	A	.	.	PASS	END=193121567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	193121568	.	T	.	.	PASS	END=193121605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:96:60
chr1	193121606	.	T	.	.	PASS	END=193121625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	193149422	.	T	.	.	LowGQX	END=193149645	GT	./.
chr1	193149646	.	G	.	.	LowGQX	END=193149785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	193149786	.	A	.	.	LowGQX	END=193150109	GT	./.
chr1	193150110	.	T	.	.	LowGQX	END=193150264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193150265	.	G	T	3.07	LowGQX;LowQD;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=1.53;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:30,0,33:60:3:0.500
chr1	193150266	.	G	.	.	LowGQX	END=193150397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193150398	.	A	.	.	LowGQX	END=193150416	GT	./.
chr1	193150417	.	C	.	.	LowGQX	END=193150462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193150463	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	193150464	.	T	.	.	LowGQX	END=193150542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	193150543	.	T	.	.	LowGQX	.	GT	./.
chr1	193150544	.	G	.	.	LowGQX	END=193150602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	193150603	.	T	.	.	LowGQX	END=193150694	GT	./.
chr1	193172874	.	T	.	.	PASS	END=193172908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	193172909	.	T	.	.	PASS	END=193172945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	193172946	.	A	.	.	PASS	END=193172963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	193172964	.	C	.	.	PASS	END=193173016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	193173017	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:66:60
chr1	193173018	.	A	.	.	PASS	END=193173033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	193181144	.	A	.	.	PASS	END=193181244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:89:60
chr1	193181245	.	A	.	.	PASS	END=193181281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	193181469	.	A	.	.	PASS	END=193181522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	193181523	.	C	.	.	PASS	END=193181592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	193181593	.	T	.	.	PASS	END=193181648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	193181649	.	A	.	.	PASS	END=193181658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	193202072	.	T	.	.	PASS	END=193202094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	193202095	.	A	.	.	PASS	END=193202231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	193202232	.	A	.	.	PASS	END=193202255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	193202256	.	C	.	.	PASS	END=193202306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	193202307	.	A	.	.	PASS	END=193202335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	193205335	.	A	.	.	PASS	END=193205354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	193205355	.	T	.	171.43	PASS	DP=113;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:90:113:99:60:99
chr1	193205356	.	A	.	.	PASS	END=193205365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	193205366	.	A	.	54.80	LowGQX	DP=119;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:82:119:24.81:60:25
chr1	193205367	.	C	.	.	PASS	END=193205369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	193205370	.	A	.	163.78	PASS	DP=118;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:94:118:99:60:99
chr1	193205371	.	C	.	.	PASS	END=193205413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	193205414	.	G	.	.	PASS	END=193205525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	193205526	.	T	.	.	PASS	END=193205527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	193218809	.	T	.	.	PASS	END=193218814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	193218815	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	193218816	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr1	193218817	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	193218818	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr1	193218819	.	T	.	.	PASS	END=193218829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	193218830	.	A	.	.	PASS	END=193218842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	193218843	.	C	.	.	PASS	END=193218850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	193218851	.	T	.	.	PASS	END=193218872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	193218873	.	T	.	.	PASS	END=193218922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:94:60
chr1	193218923	.	T	.	.	PASS	END=193218941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	193218942	.	C	.	.	PASS	END=193218999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	193219000	.	A	.	.	PASS	END=193219029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr1	193219030	.	T	.	.	PASS	END=193219052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	193219755	.	A	.	.	PASS	END=193219758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	193219759	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	193219760	.	C	.	.	PASS	END=193219761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	193219762	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:21:60
chr1	193219763	.	A	.	.	PASS	END=193219764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	193219765	.	A	.	.	LowGQX	END=193219768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:60
chr1	193219769	.	C	.	.	PASS	END=193219773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	193219774	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	193219775	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr1	193219776	.	C	.	.	PASS	END=193219809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	193219810	.	A	.	.	PASS	END=193219814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	193219815	.	A	.	.	PASS	END=193219841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	193219842	.	A	.	.	PASS	END=193219864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	193219865	.	G	.	.	PASS	END=193219893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	196197352	.	T	.	.	LowGQX	END=196197467	GT	./.
chr1	196205109	.	A	.	.	LowGQX	END=196205208	GT	./.
chr1	196227271	.	C	.	.	LowGQX	END=196227321	GT	./.
chr1	196227322	.	A	.	.	LowGQX	END=196227345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196227346	.	C	.	.	LowGQX	.	GT	./.
chr1	196227347	.	A	.	.	LowGQX	END=196227369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196227370	.	A	.	.	LowGQX	.	GT	./.
chr1	196227371	.	A	.	.	LowGQX	END=196227372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196227373	.	T	.	.	LowGQX	END=196227374	GT	./.
chr1	196227375	.	C	.	.	LowGQX	END=196227389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196227390	.	T	.	.	LowGQX	.	GT	./.
chr1	196227391	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196227392	.	T	.	.	LowGQX	.	GT	./.
chr1	196227393	.	C	.	.	LowGQX	END=196227421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196227422	.	T	.	.	LowGQX	.	GT	./.
chr1	196227423	.	G	.	.	LowGQX	END=196227438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196227439	.	T	.	.	LowGQX	.	GT	./.
chr1	196227440	.	G	.	.	LowGQX	END=196227451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196227452	.	T	.	.	LowGQX	.	GT	./.
chr1	196227453	.	G	.	.	LowGQX	END=196227465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196227466	.	T	.	.	LowGQX	.	GT	./.
chr1	196227467	.	C	.	.	LowGQX	END=196227469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196227470	.	C	.	.	LowGQX	END=196227471	GT	./.
chr1	196227472	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196227473	.	A	.	.	LowGQX	END=196227599	GT	./.
chr1	196227600	.	C	.	.	LowGQX	END=196227626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196227744	.	A	.	.	LowGQX	END=196227843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196242499	.	T	.	.	LowGQX	END=196242657	GT	./.
chr1	196242658	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196249938	.	T	.	.	LowGQX	END=196250094	GT	./.
chr1	196250095	.	T	.	.	LowGQX	END=196250120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196251395	.	T	.	.	LowGQX	END=196251494	GT	./.
chr1	196254785	.	A	.	.	LowGQX	END=196254801	GT	./.
chr1	196254802	.	G	.	.	LowGQX	END=196254816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196254817	.	G	.	.	LowGQX	.	GT	./.
chr1	196254818	.	C	.	.	LowGQX	END=196254819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196254820	.	A	.	.	LowGQX	.	GT	./.
chr1	196254821	.	A	.	.	LowGQX	END=196254823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196254824	.	A	.	.	LowGQX	.	GT	./.
chr1	196254825	.	C	.	.	LowGQX	END=196254832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196254833	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	196254834	.	C	.	.	LowGQX	END=196254890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196274310	.	A	.	.	LowGQX	END=196274477	GT	./.
chr1	196285020	.	A	.	.	LowGQX	END=196285158	GT	./.
chr1	196286347	.	T	.	.	LowGQX	END=196286446	GT	./.
chr1	196288600	.	A	.	.	LowGQX	END=196288648	GT	./.
chr1	196288649	.	A	.	.	LowGQX	END=196288693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196288694	.	T	.	.	LowGQX	.	GT	./.
chr1	196288695	.	A	.	.	LowGQX	END=196288699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196295845	.	A	.	.	LowGQX	END=196295893	GT	./.
chr1	196295894	.	A	.	.	LowGQX	END=196296034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196300284	.	A	.	.	LowGQX	END=196300443	GT	./.
chr1	196302975	.	A	.	.	LowGQX	END=196303096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196303097	.	C	.	.	LowGQX	END=196303120	GT	./.
chr1	196303121	.	G	.	.	LowGQX	END=196303138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196303139	.	G	.	.	LowGQX	.	GT	./.
chr1	196303140	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196303141	.	G	.	.	LowGQX	.	GT	./.
chr1	196303142	.	C	.	.	LowGQX	END=196303154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196303155	.	T	.	.	LowGQX	.	GT	./.
chr1	196303156	.	A	.	.	LowGQX	END=196303175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196303176	.	C	.	.	LowGQX	.	GT	./.
chr1	196303177	.	T	.	.	LowGQX	END=196303192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	196309469	.	A	.	.	LowGQX	END=196309495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196309496	.	A	.	.	LowGQX	END=196309635	GT	./.
chr1	196309636	.	G	.	.	LowGQX	END=196309702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196311207	.	A	.	.	LowGQX	END=196311360	GT	./.
chr1	196342218	.	T	.	.	LowGQX	END=196342318	GT	./.
chr1	196342319	.	G	.	.	LowGQX	END=196342380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196367691	.	A	.	.	LowGQX	END=196367803	GT	./.
chr1	196392162	.	A	.	.	LowGQX	END=196392261	GT	./.
chr1	196394980	.	A	.	.	LowGQX	END=196395120	GT	./.
chr1	196397233	.	A	.	.	LowGQX	END=196397401	GT	./.
chr1	196398705	.	A	.	.	LowGQX	END=196398889	GT	./.
chr1	196434421	.	A	.	.	LowGQX	END=196434574	GT	./.
chr1	196436825	.	A	.	.	LowGQX	END=196436924	GT	./.
chr1	196438052	.	A	.	.	LowGQX	END=196438211	GT	./.
chr1	196448237	.	A	.	.	LowGQX	END=196448388	GT	./.
chr1	196451379	.	C	.	.	LowGQX	END=196451535	GT	./.
chr1	196458916	.	A	.	.	LowGQX	END=196458966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196458967	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	196458968	.	C	.	.	LowGQX	END=196459069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196461320	.	A	.	.	LowGQX	.	GT	./.
chr1	196461321	.	A	.	.	LowGQX	END=196461323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196461324	.	A	.	.	LowGQX	.	GT	./.
chr1	196461325	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196461326	.	C	.	.	LowGQX	.	GT	./.
chr1	196461327	.	A	.	.	LowGQX	END=196461333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196461334	.	T	.	.	LowGQX	.	GT	./.
chr1	196461335	.	G	.	.	LowGQX	END=196461344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196461345	.	G	.	.	LowGQX	END=196461406	GT	./.
chr1	196461407	.	T	.	.	LowGQX	END=196461416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196461417	.	T	.	.	LowGQX	END=196461418	GT	./.
chr1	196461419	.	A	.	.	LowGQX	END=196461427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196461428	.	T	.	.	LowGQX	.	GT	./.
chr1	196461429	.	T	.	.	LowGQX	END=196461447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196461448	.	T	.	.	LowGQX	.	GT	./.
chr1	196461449	.	T	.	.	LowGQX	END=196461457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196461458	.	A	.	.	LowGQX	.	GT	./.
chr1	196461459	.	T	.	.	LowGQX	END=196461463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196461464	.	C	.	.	LowGQX	.	GT	./.
chr1	196461465	.	T	.	.	LowGQX	END=196461470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196461471	.	C	.	.	LowGQX	.	GT	./.
chr1	196461472	.	C	.	.	LowGQX	END=196461473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196461474	.	G	.	.	LowGQX	.	GT	./.
chr1	196461475	.	C	.	.	LowGQX	END=196461480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196461481	.	G	.	.	LowGQX	.	GT	./.
chr1	196577343	.	A	.	.	LowGQX	END=196577442	GT	./.
chr1	196621187	.	A	.	.	PASS	END=196621201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	196621202	.	T	.	.	PASS	END=196621230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	196621231	.	C	.	.	PASS	END=196621307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	196621308	.	A	.	.	PASS	END=196621320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	196621321	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:68:60
chr1	196621322	.	C	.	.	PASS	END=196621353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	196621354	.	G	.	.	PASS	END=196621356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	196642057	.	G	.	.	PASS	END=196642344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	196642936	.	A	.	.	PASS	END=196642948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	196642949	.	T	.	.	PASS	END=196642990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	196642991	.	G	.	.	PASS	END=196643059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	196643060	.	T	.	.	PASS	END=196643081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	196643082	.	T	.	.	PASS	END=196643098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	196643099	.	A	.	.	PASS	END=196643103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	196643104	.	A	.	.	PASS	END=196643142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	196643143	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:48:60
chr1	196645068	.	C	.	.	PASS	END=196645170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	196645171	.	A	.	.	PASS	END=196645192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	196645193	.	A	.	.	PASS	END=196645223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	196645224	.	T	.	.	PASS	END=196645246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	196646555	.	A	.	.	PASS	END=196646585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	196646586	.	A	.	.	PASS	END=196646608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	196646609	.	T	.	.	PASS	END=196646614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	196646615	.	G	.	.	PASS	END=196646654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	196646655	.	T	.	.	PASS	END=196646694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:97:60
chr1	196646695	.	G	.	.	PASS	END=196646724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	196646725	.	A	.	.	PASS	END=196646808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	196646809	.	T	.	.	PASS	END=196646848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	196648702	.	C	.	.	PASS	END=196648735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	196648736	.	T	.	.	PASS	END=196648837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	196648838	.	T	.	.	PASS	END=196648941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	196648942	.	T	.	.	PASS	END=196648974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	196654143	.	T	.	.	PASS	END=196654164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	196654165	.	C	.	.	PASS	END=196654171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	196654172	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:48:60
chr1	196654173	.	A	.	.	PASS	END=196654211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	196654212	.	C	.	.	PASS	END=196654244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	196654245	.	G	.	.	PASS	END=196654323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	196654324	.	A	C	588.19	PASS	BaseQRankSum=0.463;DP=63;Dels=0.00;FS=1.038;HRun=1;HaplotypeScore=2.9457;MQ=60;MQ0=0;MQRankSum=-0.021;QD=9.34;ReadPosRankSum=-0.657;SB=-322.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,28:63:99:618,0,809:60:99:0.444
chr1	196654325	.	A	.	.	PASS	END=196654352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	196654353	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:73:60
chr1	196654354	.	T	.	.	PASS	END=196654375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	196654376	.	C	.	.	PASS	END=196654388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	196654389	.	A	.	.	PASS	END=196654407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	196654408	.	A	.	.	PASS	END=196654418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	196658499	.	G	.	.	PASS	END=196658565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	196658566	.	T	.	.	PASS	END=196658582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	196658583	.	G	.	.	PASS	END=196658592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	196658593	.	T	.	.	PASS	END=196658624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:59
chr1	196658625	.	T	.	.	PASS	END=196658722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	196658723	.	T	.	.	PASS	END=196658735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	196658736	.	C	.	.	PASS	END=196658755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	196658756	.	T	.	.	PASS	END=196658772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	196658773	.	A	.	.	PASS	END=196658786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	196658787	.	C	.	.	PASS	END=196658795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	196659142	.	A	.	.	PASS	END=196659176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	196659177	.	T	.	.	PASS	END=196659198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	196659199	.	G	.	.	PASS	END=196659236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	196659237	.	C	T	2250.73	PASS	BaseQRankSum=2.484;DP=150;Dels=0.00;FS=5.242;HRun=1;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=-0.461;QD=15.00;ReadPosRankSum=1.816;SB=-1258.78	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:61,88:150:99:2281,0,1412:60:99:0.591
chr1	196659238	.	A	.	.	PASS	END=196659329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	196659330	.	G	.	.	PASS	END=196659359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	196659360	.	A	.	.	PASS	END=196659397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	196659398	.	T	.	.	PASS	END=196659420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	196659463	.	T	.	.	PASS	END=196659473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	196659474	.	C	.	.	PASS	END=196659490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	196659491	.	A	.	.	PASS	END=196659501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	196659502	.	T	.	.	PASS	END=196659508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	196659509	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	196659510	.	T	.	.	PASS	END=196659526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	196659527	.	T	.	.	PASS	END=196659558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	196659559	.	A	.	.	LowGQX	END=196659562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	196670385	.	G	.	.	PASS	END=196670411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	196670412	.	A	.	.	PASS	END=196670454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	196670455	.	C	.	.	PASS	END=196670484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	196682814	.	A	.	.	PASS	END=196682919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:92:60
chr1	196682920	.	G	.	.	PASS	END=196682962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	196682963	.	C	.	.	PASS	END=196683070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	196683071	.	T	.	.	PASS	END=196683098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	196684672	.	T	.	.	PASS	END=196684690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	196684691	.	A	.	.	PASS	END=196684706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	196684707	.	A	.	.	PASS	END=196684716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	196684717	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:45:13:60
chr1	196684718	.	A	.	.	PASS	END=196684737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	196684738	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:76:60
chr1	196684739	.	A	.	.	PASS	END=196684798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	196684799	.	G	.	.	PASS	END=196684857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	196684858	.	T	.	.	PASS	END=196684874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	196684875	.	T	.	.	PASS	END=196684900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	196684901	.	T	.	.	PASS	END=196684927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	196684928	.	T	.	.	PASS	END=196684933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr1	196684934	.	A	.	.	PASS	END=196684950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	196694200	.	T	.	.	PASS	END=196694244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	196694245	.	T	.	.	PASS	END=196694310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	196694311	.	A	.	.	PASS	END=196694427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	196694428	.	G	.	.	PASS	END=196694467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	196694468	.	C	.	.	PASS	END=196694478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	196695549	.	T	.	.	PASS	END=196695564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	196695565	.	A	.	.	PASS	END=196695573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	196695574	.	T	.	.	PASS	END=196695588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	196695589	.	T	.	.	PASS	END=196695604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	196695605	.	G	.	.	PASS	END=196695623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	196695624	.	C	.	.	PASS	END=196695735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	196695736	.	A	.	.	PASS	END=196695741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	196695742	.	A	G	783.01	PASS	BaseQRankSum=-1.470;DP=64;Dels=0.00;FS=3.511;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=0.472;QD=12.23;ReadPosRankSum=-0.931;SB=-512.40	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:29,35:64:99:813,0,876:60:99:0.547
chr1	196695743	.	T	.	.	PASS	END=196695760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr1	196695761	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:99:60
chr1	196695762	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:42:60
chr1	196695763	.	A	.	.	PASS	END=196695784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	196695785	.	A	.	.	PASS	END=196695829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	196695830	.	T	.	.	PASS	END=196695833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:87:60
chr1	196695840	.	A	.	.	PASS	END=196695850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	196695851	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:68:60
chr1	196695852	.	A	.	.	PASS	END=196695886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	196695887	.	A	.	.	PASS	END=196695889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	196695890	.	G	.	.	PASS	END=196695900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	196695901	.	T	.	.	PASS	END=196695955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	196695956	.	C	.	.	PASS	END=196696035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	196696036	.	T	.	.	PASS	END=196696049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	196696050	.	C	.	.	PASS	END=196696059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	196696060	.	C	.	.	PASS	END=196696082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	196696083	.	T	.	.	PASS	END=196696104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	196696105	.	A	.	.	PASS	END=196696106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	196696107	.	T	.	.	PASS	END=196696117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	196696118	.	T	.	.	PASS	END=196696121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	196697425	.	T	.	.	PASS	END=196697457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	196697458	.	A	.	.	PASS	END=196697572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	196697573	.	G	.	.	PASS	END=196697703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	196705903	.	T	.	.	PASS	END=196705916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	196705917	.	T	.	.	PASS	END=196705925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	196705926	.	C	A	412.43	PASS	BaseQRankSum=-1.793;DP=55;Dels=0.00;FS=2.691;HRun=2;HaplotypeScore=1.9965;MQ=60;MQ0=0;MQRankSum=-0.996;QD=7.50;ReadPosRankSum=-0.961;SB=-146.52	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,21:55:99:442,0,920:60:99:0.382
chr1	196705927	.	A	.	.	PASS	END=196705976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:79:60
chr1	196705977	.	C	.	.	PASS	END=196705997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	196705998	.	T	.	.	PASS	END=196706046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	196706047	.	C	.	.	PASS	END=196706153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	196706154	.	T	.	.	PASS	END=196706187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	196706554	.	A	.	.	PASS	END=196706575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	196706576	.	T	.	.	PASS	END=196706598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	196706599	.	A	.	.	PASS	END=196706621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	196706622	.	C	.	.	PASS	END=196706633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	196706634	.	A	.	.	PASS	END=196706647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	196706648	.	C	.	.	PASS	END=196706750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	196706751	.	T	.	.	PASS	END=196706777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	196706778	.	C	.	.	PASS	END=196706788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	196706789	.	A	.	.	PASS	END=196706791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	196706792	.	T	.	.	PASS	END=196706796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	196706797	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:18:60
chr1	196706798	.	C	.	.	PASS	END=196706807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	196706808	.	A	.	.	PASS	END=196706813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	196706814	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:1:60
chr1	196706815	.	T	.	.	PASS	END=196706826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	196706827	.	T	.	.	PASS	END=196706828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	196706829	.	G	.	.	PASS	END=196706841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	196709698	.	A	.	.	PASS	END=196709716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	196709717	.	A	.	.	PASS	END=196709734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	196709735	.	T	.	.	PASS	END=196709746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	196709747	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:60
chr1	196709748	.	G	.	.	PASS	END=196709750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	196709751	.	C	.	.	PASS	END=196709754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr1	196709755	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:36:60
chr1	196709756	.	T	.	.	PASS	END=196709757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	196709758	.	G	.	.	PASS	END=196709759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:60
chr1	196709760	.	A	.	.	PASS	END=196709763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	196709764	.	C	.	.	PASS	END=196709765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:39:60
chr1	196709766	.	C	.	.	PASS	END=196709767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	196709768	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chr1	196709769	.	C	.	.	PASS	END=196709773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr1	196709774	.	G	T	178.52	PASS	BaseQRankSum=-0.582;DP=25;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=10.4665;MQ=60;MQ0=0;MQRankSum=-0.749;QD=7.14;ReadPosRankSum=0.083;SB=-60.58	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:15,10:25:99:209,0,349:60:99:0.400
chr1	196709775	.	A	.	.	PASS	END=196709783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr1	196709784	.	G	.	.	PASS	END=196709786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	196709787	.	G	.	.	PASS	END=196709798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	196709799	.	A	.	.	PASS	END=196709802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	196709803	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:69:60
chr1	196709804	.	A	.	.	PASS	END=196709815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	196709816	.	G	.	.	PASS	END=196709838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	196709839	.	A	.	.	PASS	END=196709943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	196709944	.	T	.	.	PASS	END=196709961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	196709962	.	T	.	.	PASS	END=196709971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	196709972	.	A	.	.	PASS	END=196709973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	196710954	.	T	.	.	PASS	END=196710982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	196710983	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:53:60
chr1	196710984	.	T	.	.	PASS	END=196710994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	196710995	.	C	.	.	PASS	END=196711044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	196711045	.	A	.	.	PASS	END=196711068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	196711069	.	G	.	.	PASS	END=196711103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	196711104	.	C	.	.	PASS	END=196711207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	196711208	.	T	.	.	PASS	END=196711219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	196711220	.	G	.	.	PASS	END=196711232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	196712531	.	T	.	.	PASS	END=196712550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:55
chr1	196712551	.	A	.	.	PASS	END=196712576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:56
chr1	196712577	.	T	C	266.66	SB	BaseQRankSum=0.977;DP=109;Dels=0.00;FS=19.897;HRun=0;HaplotypeScore=9.6172;MQ=56;MQ0=2;MQRankSum=-7.087;QD=2.45;ReadPosRankSum=-0.992;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:86,23:109:99:297,0,2428:56:99:0.211
chr1	196712578	.	T	.	.	PASS	END=196712585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:56
chr1	196712586	.	C	T	551.05	SB	BaseQRankSum=2.480;DP=134;Dels=0.00;FS=14.354;HRun=1;HaplotypeScore=6.6284;MQ=57;MQ0=2;MQRankSum=-4.708;QD=4.11;ReadPosRankSum=-1.922;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:101,33:134:99:581,0,2830:57:99:0.246
chr1	196712587	.	T	.	.	PASS	END=196712599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:57
chr1	196712600	.	C	.	.	PASS	END=196712617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:57
chr1	196712618	.	C	.	.	PASS	END=196712651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:58
chr1	196712652	.	A	.	.	PASS	END=196712749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:325:99:57
chr1	196712750	.	A	.	.	PASS	END=196712800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:250:99:54
chr1	196712801	.	A	.	.	PASS	END=196712802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:54
chr1	196712803	.	G	.	.	PASS	END=196712809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:52
chr1	196714896	.	T	.	.	PASS	END=196714958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:57
chr1	196714959	.	A	.	.	PASS	END=196714978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:52
chr1	196714979	.	A	.	.	PASS	END=196715110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:40
chr1	196715111	.	G	.	.	PASS	END=196715125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:45
chr1	196715126	.	T	.	.	PASS	END=196715143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:49
chr1	196715144	.	A	.	.	PASS	END=196715180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:52
chr1	196716190	.	G	.	.	PASS	END=196716211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:48
chr1	196716212	.	G	.	.	PASS	END=196716244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:50
chr1	196716245	.	G	.	.	PASS	END=196716334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:53
chr1	196716335	.	A	.	.	PASS	END=196716393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:59
chr1	196716394	.	C	.	.	PASS	END=196716427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:58
chr1	196716428	.	T	.	.	PASS	END=196716465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:58
chr1	196716466	.	T	.	.	PASS	END=196716491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:59
chr1	196716492	.	A	.	.	PASS	END=196716494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	196743954	.	A	.	.	PASS	END=196743963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	196743964	.	C	A	1272.73	PASS	BaseQRankSum=1.500;DP=98;Dels=0.00;FS=5.434;HRun=0;HaplotypeScore=7.8283;MQ=60;MQ0=0;MQRankSum=-0.135;QD=12.99;ReadPosRankSum=0.597;SB=-663.47	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:47,51:98:99:1303,0,1283:60:99:0.520
chr1	196743965	.	C	.	.	PASS	END=196743998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	196743999	.	C	.	.	PASS	END=196744098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	196744099	.	T	.	.	PASS	END=196744125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	196748241	.	T	.	.	PASS	END=196748321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	196748322	.	A	.	.	PASS	END=196748340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	196748341	.	G	.	.	PASS	END=196748361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	196748362	.	T	.	.	PASS	END=196748472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	196748473	.	A	.	.	PASS	END=196748491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	196748492	.	T	.	.	PASS	END=196748504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	196748505	.	T	.	.	PASS	END=196748537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	196748876	.	A	.	.	PASS	END=196748913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	196748914	.	G	.	.	PASS	END=196748966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	196748967	.	A	.	.	PASS	END=196749022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	196749023	.	G	.	.	PASS	END=196749085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	196749086	.	C	.	.	PASS	END=196749113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	196749114	.	C	.	.	PASS	END=196749123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	196749124	.	T	.	.	PASS	END=196749141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	196749142	.	T	.	.	PASS	END=196749154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	196757295	.	A	.	.	PASS	END=196757339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:57
chr1	196757340	.	T	.	.	PASS	END=196757362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:55
chr1	196757363	.	G	.	.	PASS	END=196757391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:54
chr1	196757392	.	C	T	1122.77	PASS	BaseQRankSum=3.367;DP=106;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=19.9805;MQ=54;MQ0=1;MQRankSum=-4.421;QD=10.59;ReadPosRankSum=-1.682;SB=-518.86	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:57,47:106:99:1153,0,1315:54:99:0.452
chr1	196757393	.	G	.	.	PASS	END=196757501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:47
chr1	196757502	.	G	.	.	PASS	END=196757536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:45
chr1	196757537	.	T	.	.	PASS	END=196757553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:45
chr1	196757554	.	A	.	.	PASS	END=196757579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:46
chr1	196757813	.	A	.	.	LowGQX	END=196757817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	196757818	.	T	.	.	LowGQX	END=196757820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	196757821	.	G	.	.	LowGQX	END=196757823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	196757824	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	196757825	.	C	.	.	LowGQX	END=196757829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	196757830	.	A	.	.	LowGQX	END=196757836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	196757837	.	T	.	.	LowGQX	END=196757843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	196757844	.	C	.	.	LowGQX	END=196757845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	196757846	.	T	.	19.40	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.36:60:0
chr1	196757847	.	C	.	.	LowGQX	END=196757873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	196757874	.	G	.	4.58	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.01:60:0
chr1	196757875	.	C	.	.	LowGQX	END=196757880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	196757881	.	G	.	4.58	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.01:60:0
chr1	196757882	.	T	.	.	LowGQX	END=196757896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	196757897	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	196757898	.	C	.	.	LowGQX	END=196757908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	196757909	.	A	.	.	LowGQX	END=196757922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	196757923	.	G	.	.	LowGQX	END=196757956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196757957	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	196757958	.	T	.	.	LowGQX	END=196757962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196757963	.	T	.	.	LowGQX	.	GT	./.
chr1	196757964	.	C	.	.	LowGQX	END=196757967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	196759124	.	T	.	.	PASS	END=196759152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:90:31
chr1	196759153	.	C	.	.	PASS	END=196759171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:84:27
chr1	196759172	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:76:69:29
chr1	196759173	.	A	.	.	PASS	END=196759192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:29
chr1	196759193	.	G	.	.	PASS	END=196759214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:32
chr1	196759215	.	T	.	.	PASS	END=196759286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:34
chr1	196759287	.	C	.	.	PASS	END=196759338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:35
chr1	196759339	.	G	.	.	PASS	END=196759351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:32
chr1	196759352	.	G	.	.	PASS	END=196759378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:30
chr1	196759379	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:66:30
chr1	196759380	.	C	.	.	PASS	END=196759408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:27
chr1	196762396	.	T	.	.	PASS	END=196762449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:59
chr1	196762450	.	C	.	.	PASS	END=196762464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	196762465	.	A	.	.	PASS	END=196762601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	196762602	.	G	.	.	PASS	END=196762612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	196762613	.	A	.	.	PASS	END=196762623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	196762624	.	A	.	.	PASS	END=196762642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	196762643	.	A	.	.	PASS	END=196762694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	196763611	.	T	.	.	LowGQX	END=196763770	GT	./.
chr1	196788864	.	T	.	.	LowMQ	END=196788868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:33:11
chr1	196788869	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:75:7:12
chr1	196788870	.	C	.	.	LowMQ	END=196788877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:33:11
chr1	196788878	.	T	.	.	LowMQ	END=196788884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:39:12
chr1	196788885	.	T	.	.	LowMQ	END=196788889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:42:12
chr1	196788890	.	C	.	.	LowMQ	END=196788917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:51:12
chr1	196788918	.	A	.	.	LowMQ	END=196788925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:60:13
chr1	196788926	.	C	.	.	LowMQ	END=196788928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:63:14
chr1	196788929	.	C	.	.	LowMQ	END=196788953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:72:13
chr1	196788954	.	A	.	.	LowMQ	END=196788959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:63:13
chr1	196788960	.	T	.	.	LowMQ	END=196788981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:72:13
chr1	196788982	.	T	.	.	LowMQ	END=196789047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:96:14
chr1	196789048	.	A	.	.	LowMQ	END=196789063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:93:17
chr1	196789064	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:81:62:17
chr1	196789065	.	C	.	.	LowMQ	END=196789083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:75:16
chr1	196794556	.	T	.	.	PASS	END=196794625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	196794626	.	A	.	.	PASS	END=196794776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	196794777	.	T	.	.	PASS	END=196794813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	196794814	.	T	.	.	PASS	END=196794850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	196794851	.	A	.	.	PASS	END=196794852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	196795908	.	C	.	.	PASS	END=196795952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	196795953	.	C	.	.	PASS	END=196795997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:57
chr1	196795998	.	A	.	.	PASS	END=196796091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:58
chr1	196796092	.	T	.	.	PASS	END=196796109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:57
chr1	196796110	.	C	.	.	PASS	END=196796135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:59
chr1	196796136	.	G	.	.	PASS	END=196796148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	196796149	.	T	.	.	PASS	END=196796160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	196796161	.	T	.	.	PASS	END=196796165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	196796166	.	T	.	.	PASS	END=196796172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	196796173	.	T	.	.	PASS	END=196796183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	196796184	.	G	A	115.24	SB	BaseQRankSum=-1.056;DP=19;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=-0.718;QD=6.07;ReadPosRankSum=0.127;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:12,7:19:99:145,0,370:60:99:0.368
chr1	196796185	.	A	.	.	PASS	END=196796186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	196797149	.	T	.	.	PASS	END=196797155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:50
chr1	196797156	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:49:50
chr1	196797157	.	A	.	.	PASS	END=196797164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:50
chr1	196797165	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:52:51
chr1	196797166	.	A	.	.	PASS	END=196797195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:51
chr1	196797196	.	T	.	.	PASS	END=196797223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:52
chr1	196797224	.	C	.	.	PASS	END=196797237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:54
chr1	196797238	.	C	T	13.11	LowGQX;LowQD;SB	BaseQRankSum=1.946;DP=107;Dels=0.00;FS=1.471;HRun=1;HaplotypeScore=1.9363;MQ=56;MQ0=2;MQRankSum=-5.744;QD=0.12;ReadPosRankSum=2.127;SB=-9.98	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:86,20:107:42.89:43,0,2607:56:13:0.189
chr1	196797239	.	A	.	.	PASS	END=196797243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:56
chr1	196797244	.	C	G	3.46	LowGQX;LowQD;SB	BaseQRankSum=0.975;DP=111;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.9363;MQ=56;MQ0=2;MQRankSum=-5.700;QD=0.03;ReadPosRankSum=1.049;SB=-0.78	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:91,20:111:30.85:31,0,2764:56:3:0.180
chr1	196797245	.	T	.	.	PASS	END=196797273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:56
chr1	196797274	.	G	.	.	PASS	END=196797356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:56
chr1	196797357	.	A	G	90.27	LowQD;SB	BaseQRankSum=0.354;DP=136;Dels=0.00;FS=30.892;HRun=1;HaplotypeScore=8.5745;MQ=56;MQ0=1;MQRankSum=-5.829;QD=0.66;ReadPosRankSum=-0.034;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:122,14:136:99:120,0,3284:56:90:0.103
chr1	196797358	.	G	.	.	PASS	END=196797390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:54
chr1	196797391	.	T	.	.	PASS	END=196797420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:51
chr1	196797421	.	G	.	.	PASS	END=196797427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:48
chr1	196799579	.	T	.	.	PASS	END=196799619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:58
chr1	196799620	.	T	.	.	PASS	END=196799651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:53
chr1	196799652	.	C	.	.	PASS	END=196799690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:45
chr1	196799691	.	G	A	1848.77	PASS	BaseQRankSum=2.894;DP=168;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.6798;MQ=45;MQ0=20;MQRankSum=-0.737;QD=11.00;ReadPosRankSum=-0.960;SB=-1055.60	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:95,73:168:99:1879,0,2105:45:99:0.435
chr1	196799692	.	T	.	.	PASS	END=196799803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:40
chr1	196799804	.	A	.	.	PASS	END=196799820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:48
chr1	196799821	.	T	.	.	PASS	END=196799863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:52
chr1	196800855	.	C	.	.	PASS	END=196800890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:46
chr1	196800891	.	A	.	.	PASS	END=196800930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:48
chr1	196800931	.	G	.	.	PASS	END=196801041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:51
chr1	196801042	.	G	T	3507.85	PASS	BaseQRankSum=2.542;DP=239;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=18.0442;MQ=58;MQ0=0;MQRankSum=0.558;QD=14.68;ReadPosRankSum=1.678;SB=-1649.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:113,126:239:99:3508,0,2822:58:99:0.527
chr1	196801043	.	G	.	.	PASS	END=196801077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:58
chr1	196801078	.	A	T	3483.51	PASS	BaseQRankSum=2.010;DP=221;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=12.4154;MQ=58;MQ0=0;MQRankSum=2.195;QD=15.76;ReadPosRankSum=0.342;SB=-1880.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:94,127:221:99:3484,0,2413:58:99:0.575
chr1	196801079	.	A	.	.	PASS	END=196801111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:58
chr1	196801112	.	A	.	.	PASS	END=196801158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:58
chr1	196801159	.	A	.	.	PASS	END=196801180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:58
chr1	196857260	.	A	.	.	PASS	END=196857359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:59
chr1	196871546	.	A	.	.	PASS	END=196871572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	196871573	.	A	.	.	PASS	END=196871591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	196871592	.	T	.	.	PASS	END=196871731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	196871732	.	G	.	.	PASS	END=196871743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	196871744	.	C	.	.	PASS	END=196871747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	196874237	.	G	.	.	PASS	END=196874355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	196874356	.	G	T	3393.39	PASS	DP=97;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=12.3099;MQ=60;MQ0=0;QD=34.98;SB=-861.74	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,97:97:99:3393,262,0:60:99:1.000
chr1	196874357	.	G	.	.	PASS	END=196874436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	196875990	.	G	.	.	PASS	END=196876039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	196876040	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:66:60
chr1	196876041	.	A	.	.	PASS	END=196876083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	196876084	.	A	.	.	PASS	END=196876129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	196876130	.	T	.	.	PASS	END=196876189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	196876445	.	G	.	.	PASS	END=196876454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	196876455	.	A	.	.	PASS	END=196876457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	196876458	.	A	G	1501.47	PASS	BaseQRankSum=0.564;DP=107;Dels=0.00;FS=0.779;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=0.706;QD=14.03;ReadPosRankSum=1.698;SB=-754.03	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:47,58:107:99:1531,0,1146:60:99:0.552
chr1	196876459	.	C	.	.	PASS	END=196876481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	196876482	.	G	.	.	PASS	END=196876601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	196876602	.	A	.	.	PASS	END=196876618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	196876619	.	A	.	.	PASS	END=196876628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	196879410	.	G	.	.	PASS	END=196879441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	196879442	.	A	.	.	PASS	END=196879467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	196879468	.	C	.	.	PASS	END=196879598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	196879599	.	C	.	.	PASS	END=196879608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	196881868	.	A	.	.	PASS	END=196881970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:55
chr1	196881971	.	G	.	.	PASS	END=196882025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:49
chr1	196882026	.	G	.	.	PASS	END=196882054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:46
chr1	196883623	.	A	.	.	PASS	END=196883730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:59
chr1	196883731	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:40:59
chr1	196883732	.	A	.	.	PASS	END=196883745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:59
chr1	196883746	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:59
chr1	196883747	.	A	.	.	PASS	END=196883803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:59
chr1	196884084	.	A	.	.	PASS	END=196884090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:28
chr1	196884091	.	T	.	.	PASS	END=196884105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:30
chr1	196884106	.	C	.	.	PASS	END=196884119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:33
chr1	196884120	.	T	.	.	PASS	END=196884243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:34
chr1	196884244	.	T	.	.	PASS	END=196884257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:33
chr1	196884258	.	A	T	496.89	PASS	BaseQRankSum=2.027;DP=170;Dels=0.00;FS=0.773;HRun=0;HaplotypeScore=15.2562;MQ=33;MQ0=12;MQRankSum=-2.312;QD=2.92;ReadPosRankSum=-0.897;SB=-228.55	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:120,49:170:99:527,0,2731:33:99:0.290
chr1	196884259	.	A	.	.	PASS	END=196884270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:32
chr1	196887338	.	A	.	.	PASS	END=196887353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	196887354	.	A	.	.	PASS	END=196887388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	196887389	.	A	.	.	PASS	END=196887456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	196887457	.	G	A	2218.26	PASS	BaseQRankSum=2.995;DP=139;Dels=0.00;FS=1.773;HRun=1;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=0.004;QD=15.96;ReadPosRankSum=0.245;SB=-569.78	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:59,79:139:99:2248,0,1560:60:99:0.572
chr1	196887458	.	A	.	.	PASS	END=196887494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	196887495	.	G	.	.	PASS	END=196887504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	196887505	.	A	.	.	PASS	END=196887511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	196887512	.	A	.	.	PASS	END=196887521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	196887522	.	C	.	.	PASS	END=196887523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	196887524	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr1	196887525	.	A	.	.	PASS	END=196887538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	196912990	.	A	.	.	LowMQ	END=196913000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:30:9
chr1	196913001	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:88:24:10
chr1	196913002	.	C	.	.	LowMQ	END=196913003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:33:10
chr1	196913004	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:91:24:10
chr1	196913005	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:91:33:10
chr1	196913006	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:90:2:10
chr1	196913007	.	A	.	.	LowMQ	END=196913014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:30:10
chr1	196913015	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:92:24:10
chr1	196913016	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:92:30:10
chr1	196913017	.	C	.	.	LowGQX;LowMQ	END=196913018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:24:10
chr1	196913019	.	C	.	.	LowMQ	END=196913023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:30:10
chr1	196913024	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:90:27:10
chr1	196913025	.	C	.	.	LowMQ	END=196913026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:33:10
chr1	196913027	.	G	.	.	LowMQ	END=196913041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:42:12
chr1	196913042	.	C	.	.	LowMQ	END=196913046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:39:12
chr1	196913047	.	A	.	.	LowMQ	END=196913051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:42:12
chr1	196913052	.	C	.	.	LowMQ	END=196913063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:36:12
chr1	196913064	.	A	.	.	LowMQ	END=196913084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:30:11
chr1	196913085	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:59:27:12
chr1	196913086	.	C	.	.	LowMQ	END=196913089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:30:12
chr1	196918583	.	A	.	.	PASS	END=196918589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	196918590	.	T	.	.	PASS	END=196918621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	196918622	.	T	.	.	PASS	END=196918754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	196918755	.	T	.	.	PASS	END=196918773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	196918774	.	G	.	.	PASS	END=196918781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	196919980	.	A	.	.	PASS	END=196920045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:57
chr1	196920046	.	A	.	.	PASS	END=196920125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:58
chr1	196920126	.	G	.	.	PASS	END=196920138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:58
chr1	196920139	.	T	.	.	PASS	END=196920160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	196927019	.	A	.	.	PASS	END=196927042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	196927043	.	C	.	.	PASS	END=196927198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	196927199	.	C	.	.	PASS	END=196927205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	196928009	.	A	.	.	PASS	END=196928040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	196928041	.	A	.	.	PASS	END=196928115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	196928116	.	T	.	.	PASS	END=196928165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	196928166	.	T	.	.	PASS	END=196928189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	196928190	.	C	.	.	PASS	END=196928195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	196928196	.	T	.	.	PASS	END=196928210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	196928211	.	A	.	.	PASS	END=196928212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	196946709	.	G	.	.	PASS	END=196946729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:96:60
chr1	196946730	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:55:60
chr1	196946731	.	A	.	.	PASS	END=196946772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:96:60
chr1	196946773	.	T	.	.	PASS	END=196946852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:96:60
chr1	196946853	.	G	.	.	PASS	END=196946868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	196946869	.	T	A	332.51	PASS	BaseQRankSum=1.003;DP=52;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.9462;MQ=60;MQ0=0;MQRankSum=-0.107;QD=6.39;ReadPosRankSum=-0.068;SB=-207.26	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:32,19:52:99:363,0,765:60:99:0.373
chr1	196946870	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:61:60
chr1	196946871	.	C	.	.	PASS	END=196946903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	196951964	.	C	.	.	PASS	END=196952013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	196952014	.	G	.	.	PASS	END=196952047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	196952048	.	G	.	.	PASS	END=196952113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	196952114	.	A	.	.	PASS	END=196952184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	196952185	.	T	.	.	PASS	END=196952210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	196952211	.	T	.	.	PASS	END=196952234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	196952235	.	T	.	.	PASS	END=196952258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	196952259	.	A	.	.	PASS	END=196952260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	196953040	.	C	.	.	PASS	END=196953043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	196953044	.	T	.	.	PASS	END=196953055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	196953056	.	T	.	.	PASS	END=196953093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	196953094	.	T	.	.	PASS	END=196953111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	196953112	.	T	.	.	PASS	END=196953236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:87:60
chr1	196953237	.	T	.	.	PASS	END=196953249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	196953250	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:40:60
chr1	196953251	.	C	.	.	PASS	END=196953257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	196953258	.	A	.	.	PASS	END=196953282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	196953283	.	C	.	.	PASS	END=196953290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	196953291	.	G	.	.	PASS	END=196953318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	196963159	.	A	.	.	PASS	END=196963166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	196963167	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:75:60
chr1	196963168	.	T	.	.	PASS	END=196963185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	196963186	.	A	.	.	PASS	END=196963236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	196963237	.	A	.	.	PASS	END=196963287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	196963288	.	T	.	.	PASS	END=196963328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr1	196963329	.	T	.	.	PASS	END=196963345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr1	196963346	.	T	.	.	PASS	END=196963370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	196963371	.	T	.	.	PASS	END=196963384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	196963385	.	A	.	.	PASS	END=196963387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	196963388	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:60
chr1	196963389	.	C	.	.	PASS	END=196963395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	196963396	.	T	.	.	PASS	END=196963399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	196963400	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	196963401	.	T	.	.	PASS	END=196963407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	196963408	.	G	.	.	PASS	END=196963412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	196963413	.	A	.	.	PASS	END=196963416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	196963417	.	A	.	.	PASS	END=196963418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	196963419	.	A	.	.	PASS	END=196963431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	196963432	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chr1	196963433	.	A	.	.	PASS	END=196963437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	196964796	.	T	.	.	PASS	END=196964803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	196964804	.	T	.	.	PASS	END=196964849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	196964850	.	A	.	.	PASS	END=196964870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	196964871	.	C	.	.	PASS	END=196964902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	196964903	.	A	.	.	PASS	END=196965011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	196965012	.	C	.	.	PASS	END=196965053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	196965054	.	A	.	.	PASS	END=196965080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:84:60
chr1	196965101	.	C	.	.	PASS	END=196965160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:98:60
chr1	196965161	.	A	.	.	PASS	END=196965175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	196965176	.	T	.	.	PASS	END=196965246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	196965247	.	A	.	.	PASS	END=196965311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	196965312	.	A	.	.	PASS	END=196965326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	196965327	.	T	.	.	PASS	END=196965351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	196965352	.	T	.	.	PASS	END=196965369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	196965370	.	T	.	.	PASS	END=196965382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	196967207	.	A	.	.	PASS	END=196967253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	196967254	.	A	.	.	PASS	END=196967334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	196967335	.	A	.	.	PASS	END=196967407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	196967408	.	A	.	.	PASS	END=196967485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	196971561	.	G	.	.	PASS	END=196971634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	196971635	.	C	.	.	PASS	END=196971797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	196971798	.	A	.	.	PASS	END=196971845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	196973740	.	T	.	.	PASS	END=196973781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	196973782	.	G	.	.	PASS	END=196973909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	196973910	.	C	.	.	PASS	END=196974007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	196974008	.	T	.	.	PASS	END=196974024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	196977566	.	G	.	.	PASS	END=196977578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	196977579	.	A	.	.	PASS	END=196977580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	196977581	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:57:60
chr1	196977582	.	A	.	.	PASS	END=196977589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	196977590	.	A	.	.	PASS	END=196977596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	196977597	.	T	.	.	PASS	END=196977598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	196977599	.	T	.	.	PASS	END=196977605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	196977606	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	196977607	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	196977608	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	196977609	.	T	.	.	PASS	END=196977617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	196977618	.	T	.	.	PASS	END=196977620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	196977621	.	A	.	.	PASS	END=196977636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	196977637	.	G	.	.	PASS	END=196977655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	196977656	.	A	.	.	PASS	END=196977672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	196977673	.	A	.	.	PASS	END=196977687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	196977688	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:61:60
chr1	196977689	.	T	.	.	PASS	END=196977768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	196977769	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:57:60
chr1	196977770	.	C	.	.	PASS	END=196977773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	196977774	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:63:60
chr1	196977775	.	T	.	.	PASS	END=196977808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	196977809	.	A	.	.	PASS	END=196977820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	196977821	.	A	.	.	PASS	END=196977864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	197008457	.	A	.	.	PASS	END=197008535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	197008536	.	A	.	.	PASS	END=197008592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	197009601	.	T	.	.	PASS	END=197009643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	197009644	.	C	.	.	PASS	END=197009646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:57:60
chr1	197009647	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:51:60
chr1	197009648	.	T	.	.	PASS	END=197009651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	197009652	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:60
chr1	197009653	.	T	.	.	PASS	END=197009657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	197009658	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:54:60
chr1	197009659	.	T	.	.	PASS	END=197009669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	197009670	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:63:60
chr1	197009671	.	T	.	.	PASS	END=197009677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:69:60
chr1	197009678	.	T	.	.	PASS	END=197009683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	197009684	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:69:60
chr1	197009685	.	T	.	.	PASS	END=197009705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	197009706	.	C	.	.	PASS	END=197009797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	197009798	.	A	G	498.17	PASS	BaseQRankSum=1.084;DP=68;Dels=0.00;FS=5.316;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=1.084;QD=7.33;ReadPosRankSum=0.648;SB=-217.86	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,24:68:99:528,0,1235:60:99:0.353
chr1	197009799	.	T	.	.	PASS	END=197009860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	197009861	.	T	.	.	PASS	END=197009863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	197009864	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr1	197009865	.	T	.	.	PASS	END=197009871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	197009872	.	A	.	.	PASS	END=197009901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	197009902	.	A	.	.	PASS	END=197009916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	197019776	.	A	.	.	PASS	END=197019782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	197019783	.	A	.	.	PASS	END=197019795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	197019796	.	C	.	.	PASS	END=197019799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	197019800	.	G	.	.	PASS	END=197019808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	197019809	.	A	.	.	PASS	END=197019825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	197019826	.	C	.	.	PASS	END=197019848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	197019849	.	C	.	.	PASS	END=197019874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	197019875	.	C	.	.	PASS	END=197019993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	197019994	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:59:60
chr1	197019995	.	A	.	.	PASS	END=197020025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	197020026	.	T	.	.	PASS	END=197020038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	197020039	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:66:60
chr1	197020040	.	A	.	.	PASS	END=197020057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:96:60
chr1	197020058	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:60:60
chr1	197020059	.	C	.	.	PASS	END=197020060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	197021713	.	T	.	.	PASS	END=197021723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	197021724	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:75:60
chr1	197021725	.	G	.	.	PASS	END=197021742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	197021743	.	C	.	.	PASS	END=197021754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	197021755	.	T	.	.	PASS	END=197021766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	197021767	.	T	.	.	PASS	END=197021779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	197021780	.	A	.	.	PASS	END=197021800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	197021801	.	G	.	.	PASS	END=197021808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	197021809	.	G	.	.	PASS	END=197021830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	197021831	.	G	.	.	PASS	END=197021923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	197021924	.	G	.	.	PASS	END=197021951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	197021952	.	A	.	.	PASS	END=197021957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	197021958	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:67:60
chr1	197021959	.	A	.	.	PASS	END=197021963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	197021964	.	T	.	.	PASS	END=197021975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	197021976	.	A	.	.	PASS	END=197021994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	197021995	.	T	.	.	PASS	END=197022015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	197024794	.	A	.	.	PASS	END=197024808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	197024809	.	T	.	.	PASS	END=197024830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	197024831	.	G	.	.	PASS	END=197024853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	197024854	.	C	.	.	PASS	END=197024921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	197024922	.	T	.	.	PASS	END=197024934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	197024935	.	C	.	.	PASS	END=197024990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	197024991	.	A	.	.	PASS	END=197025061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	197025062	.	C	.	.	PASS	END=197025074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	197025075	.	A	.	.	PASS	END=197025078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	197026092	.	A	.	.	PASS	END=197026097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	197026098	.	T	.	.	PASS	END=197026108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	197026109	.	G	.	.	PASS	END=197026111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	197026112	.	T	.	.	PASS	END=197026114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	197026115	.	C	.	.	PASS	END=197026127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	197026128	.	A	.	.	PASS	END=197026141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:87:60
chr1	197026142	.	C	.	.	PASS	END=197026147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	197026148	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:76:60
chr1	197026149	.	A	.	.	PASS	END=197026170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	197026171	.	T	.	.	PASS	END=197026190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	197026191	.	C	.	.	PASS	END=197026221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	197026222	.	A	.	.	PASS	END=197026263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	197026264	.	G	.	.	PASS	END=197026312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	197026313	.	A	.	.	PASS	END=197026354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	197026355	.	T	.	.	PASS	END=197026379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	197026380	.	T	.	.	PASS	END=197026416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	197026417	.	A	.	.	PASS	END=197026477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	197026478	.	A	.	.	PASS	END=197026619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	197026620	.	C	.	.	PASS	END=197026646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	197029445	.	T	.	.	PASS	END=197029571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	197029572	.	T	.	.	PASS	END=197029591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	197029592	.	C	.	.	PASS	END=197029611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	197029612	.	G	.	.	PASS	END=197029670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	197029671	.	T	.	.	PASS	END=197029723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	197029978	.	G	.	.	PASS	END=197030018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	197030019	.	G	.	.	PASS	END=197030184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	197030185	.	A	.	.	PASS	END=197030200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	197030201	.	T	C	4934.81	PASS	DP=156;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;QD=31.63;SB=-1878.35	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,154:156:99:4935,388,0:60:99:1.000
chr1	197030202	.	G	.	.	PASS	END=197030237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	197030237	.	CT	C	2388.11	PASS	BaseQRankSum=3.140;DP=166;FS=4.744;HRun=6;HaplotypeScore=576.2361;MQ=60;MQ0=0;MQRankSum=-1.048;QD=14.39;ReadPosRankSum=-0.700;SB=-1126.62	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:85,81:166:99:2427,0,2378:60:99:0.488
chr1	197030238	.	T	.	188.06	PASS	DP=171;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:88:90:99:60:99
chr1	197030239	.	T	.	.	PASS	END=197030256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	197030863	.	A	.	.	PASS	END=197030880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr1	197030881	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:66:60
chr1	197030882	.	T	.	.	PASS	END=197030912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	197030913	.	C	.	.	PASS	END=197030931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	197030932	.	T	.	.	PASS	END=197031020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	197031021	.	C	T	2643.27	PASS	DP=87;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.5754;MQ=60;MQ0=0;QD=30.38;SB=-1448.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,87:87:99:2676,202,0:60:99:1.000
chr1	197031022	.	G	.	.	PASS	END=197031074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	197031075	.	C	.	.	PASS	END=197031082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	197031083	.	A	.	.	PASS	END=197031085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	197031086	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:75:60
chr1	197031087	.	T	.	.	PASS	END=197031092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	197031093	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:45:60
chr1	197031094	.	A	.	.	PASS	END=197031134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	197031135	.	A	.	.	PASS	END=197031150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	197031936	.	A	.	.	LowGQX	END=197031950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	197031951	.	T	.	.	PASS	END=197031954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	197031955	.	G	.	.	PASS	END=197031971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	197031972	.	A	.	.	PASS	END=197031993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	197031994	.	C	.	.	PASS	END=197032003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	197032004	.	G	.	.	PASS	END=197032020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	197032021	.	T	.	.	PASS	END=197032059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	197032060	.	G	.	.	PASS	END=197032127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	197032128	.	A	.	.	PASS	END=197032144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	197032145	.	G	.	.	PASS	END=197032163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	197032164	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:27:60
chr1	197032165	.	A	.	.	PASS	END=197032180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	197032181	.	G	.	.	PASS	END=197032203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	197032204	.	T	.	.	PASS	END=197032208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	197032209	.	C	.	.	PASS	END=197032238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	197036239	.	A	.	.	PASS	END=197036255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	197036256	.	T	.	.	PASS	END=197036291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	197036292	.	T	.	.	PASS	END=197036304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	197036305	.	C	.	.	PASS	END=197036369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	197036370	.	C	.	.	PASS	END=197036404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	197053403	.	A	.	.	PASS	END=197053422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	197053423	.	A	.	.	PASS	END=197053444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:98:60
chr1	197053445	.	T	.	.	PASS	END=197053474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	197053475	.	A	.	.	PASS	END=197053561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	197053561	.	T	TA	159.97	LowQD	BaseQRankSum=1.157;DP=87;FS=9.995;HRun=15;HaplotypeScore=590.6744;MQ=60;MQ0=0;MQRankSum=0.742;QD=1.84;ReadPosRankSum=0.008;SB=-24.36	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:63,15:87:99:199,0,573:60:99:0.192
chr1	197053562	.	A	.	.	PASS	END=197053576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	197053577	.	G	.	.	PASS	END=197053607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:87:60
chr1	197055882	.	A	.	.	PASS	END=197055899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	197055900	.	A	.	.	PASS	END=197055916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	197055917	.	A	.	.	PASS	END=197055924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	197055925	.	T	C	1300.78	PASS	DP=42;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=30.97;SB=-563.35	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,42:42:99:1334,102,0:60:99:1.000
chr1	197055926	.	T	.	.	PASS	END=197055948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	197055949	.	T	.	.	PASS	END=197055972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	197055973	.	A	.	.	PASS	END=197056038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	197056039	.	T	.	.	PASS	END=197056071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	197056072	.	G	.	.	PASS	END=197056099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	197056100	.	A	.	.	PASS	END=197056102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	197056103	.	C	.	.	PASS	END=197056116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	197056117	.	G	.	.	PASS	END=197056123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	197056124	.	T	.	.	PASS	END=197056132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	197056133	.	G	.	.	PASS	END=197056135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	197056136	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:72:60
chr1	197056137	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:51:60
chr1	197056138	.	A	.	.	PASS	END=197056139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	197056140	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:54:60
chr1	197056141	.	A	.	.	PASS	END=197056153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	197057310	.	A	.	.	PASS	END=197057331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	197057332	.	G	.	.	PASS	END=197057367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	197057368	.	C	.	.	PASS	END=197057420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	197057421	.	A	.	.	PASS	END=197057582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	197057583	.	A	.	.	PASS	END=197057613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	197059009	.	G	.	.	PASS	END=197059015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	197059016	.	A	.	.	PASS	END=197059023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:60:60
chr1	197059024	.	A	.	.	PASS	END=197059027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	197059028	.	G	.	.	PASS	END=197059059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	197059060	.	C	.	.	PASS	END=197059077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	197059078	.	G	.	.	PASS	END=197059100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	197059101	.	C	.	.	PASS	END=197059164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	197059165	.	A	.	.	PASS	END=197059252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	197059253	.	A	.	.	PASS	END=197059265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	197059275	.	G	.	.	PASS	END=197059431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	197059432	.	C	.	.	PASS	END=197059463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	197059464	.	C	.	.	PASS	END=197059506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr1	197059507	.	T	.	.	PASS	END=197059518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	197059519	.	C	.	.	PASS	END=197059526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	197059527	.	G	.	.	PASS	END=197059534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	197059535	.	A	.	.	PASS	END=197059558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	197059559	.	A	.	.	PASS	END=197059569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	197059929	.	G	.	.	PASS	END=197059953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	197059954	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:75:60
chr1	197059955	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:60
chr1	197059956	.	T	.	.	PASS	END=197059993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	197059994	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:45:60
chr1	197059995	.	T	.	.	PASS	END=197060005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	197060006	.	A	.	.	PASS	END=197060037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	197060038	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:76:60
chr1	197060039	.	G	.	.	PASS	END=197060048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	197060049	.	C	.	.	PASS	END=197060089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	197060090	.	C	.	.	PASS	END=197060194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	197060195	.	T	.	.	PASS	END=197060222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	197060986	.	T	.	.	PASS	END=197060987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:96:60
chr1	197060988	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:60
chr1	197060989	.	T	.	.	PASS	END=197061035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	197061036	.	C	.	.	PASS	END=197061065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	197061066	.	T	.	.	PASS	END=197061085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	197061086	.	A	C	1101.40	PASS	BaseQRankSum=-1.617;DP=74;Dels=0.00;FS=2.095;HRun=2;HaplotypeScore=3.8932;MQ=60;MQ0=0;MQRankSum=-0.786;QD=14.88;ReadPosRankSum=0.288;SB=-461.48	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:29,45:74:99:1131,0,832:60:99:0.608
chr1	197061087	.	G	.	.	PASS	END=197061186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	197061187	.	C	.	.	PASS	END=197061233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:81:60
chr1	197061234	.	A	.	.	PASS	END=197061237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	197062131	.	T	.	.	PASS	END=197062151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	197062152	.	G	.	.	PASS	END=197062157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	197062158	.	G	.	.	PASS	END=197062184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	197062185	.	T	.	.	PASS	END=197062199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	197062200	.	A	.	.	PASS	END=197062211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	197062212	.	T	.	.	PASS	END=197062245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	197062246	.	A	.	.	PASS	END=197062351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	197062352	.	C	.	.	PASS	END=197062362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	197062363	.	G	.	.	PASS	END=197062376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	197062377	.	A	.	.	PASS	END=197062426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	197062427	.	A	.	.	PASS	END=197062442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	197063163	.	T	.	.	PASS	END=197063239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	197063240	.	C	.	.	PASS	END=197063300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	197063301	.	A	.	.	PASS	END=197063351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	197063352	.	C	T	931.62	PASS	BaseQRankSum=-0.534;DP=84;Dels=0.00;FS=8.658;HRun=2;HaplotypeScore=7.8381;MQ=60;MQ0=0;MQRankSum=-1.087;QD=11.09;ReadPosRankSum=1.847;SB=-435.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:47,35:84:99:962,0,1291:60:99:0.427
chr1	197063353	.	T	.	.	PASS	END=197063361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	197065077	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	197065078	.	C	.	.	LowGQX	END=197065079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr1	197065080	.	A	.	.	PASS	END=197065083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	197065084	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	197065085	.	A	.	.	PASS	END=197065087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	197065088	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	197065089	.	A	.	.	PASS	END=197065093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	197065094	.	C	.	.	PASS	END=197065103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	197065104	.	C	.	.	PASS	END=197065113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	197065114	.	C	.	.	PASS	END=197065125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:75:60
chr1	197065126	.	A	.	.	PASS	END=197065135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:93:60
chr1	197065136	.	C	.	.	PASS	END=197065145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	197065146	.	G	.	.	PASS	END=197065195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	197065196	.	T	.	.	PASS	END=197065222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	197065223	.	C	.	.	PASS	END=197065283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	197065284	.	C	.	.	PASS	END=197065308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	197065309	.	A	.	.	PASS	END=197065345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	197069510	.	T	.	.	PASS	END=197069573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	197069574	.	G	.	.	PASS	END=197069637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	197069638	.	T	.	.	PASS	END=197069648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	197069649	.	C	.	.	PASS	END=197069691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	197069692	.	G	.	.	PASS	END=197069731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	197069732	.	T	.	.	PASS	END=197069839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr1	197069840	.	A	.	.	PASS	END=197069915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:307:99:60
chr1	197069916	.	T	.	.	PASS	END=197070022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:318:99:60
chr1	197070023	.	A	.	.	PASS	END=197070099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:260:99:60
chr1	197070100	.	C	.	.	PASS	END=197070179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	197070180	.	T	.	.	PASS	END=197070261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	197070262	.	C	.	.	PASS	END=197070353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr1	197070354	.	T	.	.	PASS	END=197070388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:297:99:60
chr1	197070389	.	C	.	.	PASS	END=197070441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:387:99:60
chr1	197070442	.	G	T	6534.69	PASS	BaseQRankSum=5.071;DP=453;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=25.7423;MQ=60;MQ0=0;MQRankSum=0.185;QD=14.43;ReadPosRankSum=0.192;SB=-2160.40	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:220,232:453:99:6535,0,5937:60:99:0.513
chr1	197070443	.	G	.	.	PASS	END=197070674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:386:99:60
chr1	197070675	.	T	.	.	PASS	END=197070696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:372:99:60
chr1	197070697	.	T	C	5012.11	PASS	BaseQRankSum=0.973;DP=375;Dels=0.00;FS=4.795;HRun=1;HaplotypeScore=21.9164;MQ=60;MQ0=0;MQRankSum=-0.740;QD=13.37;ReadPosRankSum=0.294;SB=-2154.74	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:195,177:375:99:5012,0,5569:60:99:0.476
chr1	197070698	.	T	.	.	PASS	END=197070706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:377:99:60
chr1	197070707	.	G	A	5558.34	PASS	BaseQRankSum=5.385;DP=372;Dels=0.00;FS=2.256;HRun=1;HaplotypeScore=21.9789;MQ=60;MQ0=0;MQRankSum=-0.316;QD=14.94;ReadPosRankSum=-1.577;SB=-2851.84	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:188,183:372:99:5558,0,5249:60:99:0.493
chr1	197070708	.	A	.	.	PASS	END=197070768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:319:99:60
chr1	197070769	.	G	.	.	PASS	END=197070814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:399:99:60
chr1	197070815	.	T	C	12001.34	PASS	BaseQRankSum=1.356;DP=402;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=31.6997;MQ=60;MQ0=0;MQRankSum=-1.023;QD=29.85;ReadPosRankSum=1.058;SB=-6359.83	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,395:402:99:12001,913,0:60:99:0.997
chr1	197070816	.	A	.	.	PASS	END=197070900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:389:99:60
chr1	197070901	.	A	G	12923.74	PASS	DP=415;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=30.5651;MQ=60;MQ0=0;QD=31.14;SB=-6319.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,413:415:99:12924,996,0:60:99:1.000
chr1	197070902	.	C	.	.	PASS	END=197071013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:350:99:60
chr1	197071014	.	T	.	.	PASS	END=197071162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:402:99:60
chr1	197071163	.	A	.	.	PASS	END=197071219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:305:99:60
chr1	197071220	.	A	.	.	PASS	END=197071285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr1	197071286	.	T	.	.	PASS	END=197071326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	197071327	.	T	.	.	PASS	END=197071380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:280:99:60
chr1	197071381	.	T	.	.	PASS	END=197071542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:315:99:60
chr1	197071543	.	T	.	.	PASS	END=197071626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:257:99:60
chr1	197071627	.	C	.	.	PASS	END=197071765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:60
chr1	197071766	.	C	.	.	PASS	END=197071830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:327:99:60
chr1	197071831	.	G	.	.	PASS	END=197071925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:437:99:60
chr1	197071926	.	G	.	.	PASS	END=197071988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:440:99:60
chr1	197071989	.	T	.	.	PASS	END=197072074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:352:99:60
chr1	197072075	.	A	.	.	PASS	END=197072188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:301:99:60
chr1	197072189	.	T	.	.	PASS	END=197072226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:284:99:60
chr1	197072227	.	A	.	.	PASS	END=197072320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:326:99:60
chr1	197072321	.	T	.	.	PASS	END=197072419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:386:99:60
chr1	197072420	.	T	C	6465.09	PASS	BaseQRankSum=0.290;DP=482;Dels=0.00;FS=1.529;HRun=0;HaplotypeScore=43.0950;MQ=60;MQ0=0;MQRankSum=0.413;QD=13.41;ReadPosRankSum=1.390;SB=-2873.03	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:237,243:482:99:6465,0,6167:60:99:0.506
chr1	197072421	.	T	.	.	PASS	END=197072551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:476:99:60
chr1	197072552	.	C	.	.	PASS	END=197072702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:562:99:60
chr1	197072703	.	T	.	.	PASS	END=197072811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:427:99:60
chr1	197072812	.	A	.	.	PASS	END=197072951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:349:99:60
chr1	197072952	.	G	.	.	PASS	END=197073022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:267:99:60
chr1	197073023	.	A	.	.	PASS	END=197073053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	197073054	.	T	.	.	PASS	END=197073113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	197073114	.	A	.	.	PASS	END=197073253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	197073254	.	C	.	.	PASS	END=197073310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	197073311	.	C	.	.	PASS	END=197073361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	197073362	.	C	.	.	PASS	END=197073402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	197073403	.	T	.	.	PASS	END=197073497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	197073498	.	G	.	.	PASS	END=197073619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:279:99:60
chr1	197073620	.	G	.	.	PASS	END=197073742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	197073743	.	A	.	.	PASS	END=197073827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	197073828	.	T	.	.	PASS	END=197073844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	197073845	.	C	.	.	PASS	END=197073868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	197073869	.	T	.	.	PASS	END=197073917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	197073918	.	C	.	.	PASS	END=197073931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	197073932	.	T	C	920.49	PASS	BaseQRankSum=1.232;DP=64;Dels=0.00;FS=3.900;HRun=0;HaplotypeScore=9.5313;MQ=60;MQ0=0;MQRankSum=0.943;QD=14.38;ReadPosRankSum=0.874;SB=-453.26	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,33:63:99:950,0,741:60:99:0.524
chr1	197073933	.	T	.	.	PASS	END=197073952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	197073953	.	T	.	.	PASS	END=197074032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	197074033	.	G	.	.	PASS	END=197074116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	197074117	.	A	.	.	PASS	END=197074283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	197074284	.	C	.	.	PASS	END=197074302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	197074303	.	T	.	.	PASS	END=197074315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:88:60
chr1	197074316	.	C	.	.	PASS	END=197074351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	197074352	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:66:60
chr1	197074353	.	A	.	.	PASS	END=197074366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	197086868	.	A	.	.	PASS	END=197086910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	197086911	.	T	.	.	PASS	END=197086992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	197086993	.	C	.	.	PASS	END=197087025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	197087026	.	G	.	.	PASS	END=197087076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	197087077	.	C	.	.	PASS	END=197087160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	197087161	.	C	.	.	PASS	END=197087164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	197090994	.	T	.	.	PASS	END=197090996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	197090997	.	C	.	.	PASS	END=197091014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	197091015	.	C	.	.	PASS	END=197091019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	197091020	.	T	.	.	PASS	END=197091081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	197091082	.	C	.	.	PASS	END=197091108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	197091109	.	G	.	.	PASS	END=197091169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	197091170	.	C	.	.	PASS	END=197091216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:96:60
chr1	197091217	.	A	.	.	PASS	END=197091224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	197091238	.	T	.	.	PASS	END=197091276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	197091277	.	T	.	.	PASS	END=197091350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	197091351	.	G	.	.	PASS	END=197091382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	197091383	.	T	.	.	PASS	END=197091482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	197091483	.	G	.	.	PASS	END=197091536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	197091537	.	A	T	4525.23	PASS	DP=145;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=15.2035;MQ=60;MQ0=0;QD=31.21;SB=-1190.49	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,144:145:99:4525,349,0:60:99:1.000
chr1	197091538	.	G	.	.	PASS	END=197091622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	197091623	.	T	.	.	PASS	END=197091639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	197091640	.	T	.	.	PASS	END=197091672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	197091673	.	A	.	.	PASS	END=197091689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	197091690	.	A	.	.	PASS	END=197091696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	197091697	.	T	.	.	PASS	END=197091700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:75:60
chr1	197091701	.	A	.	.	PASS	END=197091717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	197091718	.	T	.	.	PASS	END=197091736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	197091737	.	T	.	.	PASS	END=197091755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	197091756	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:33:60
chr1	197091757	.	G	.	.	PASS	END=197091770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	197091771	.	G	.	.	PASS	END=197091776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	197093189	.	T	.	.	PASS	END=197093302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	197093303	.	A	.	.	PASS	END=197093397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	197093398	.	T	.	.	PASS	END=197093457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	197093458	.	C	.	.	PASS	END=197093512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	197093949	.	A	.	.	PASS	END=197094029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	197094030	.	C	T	1539.70	PASS	BaseQRankSum=1.656;DP=111;Dels=0.00;FS=1.589;HRun=0;HaplotypeScore=7.6281;MQ=60;MQ0=0;MQRankSum=-1.024;QD=13.87;ReadPosRankSum=0.393;SB=-685.08	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:53,58:111:99:1570,0,1444:60:99:0.523
chr1	197094031	.	C	.	.	PASS	END=197094133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	197094134	.	A	.	.	PASS	END=197094152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	197094153	.	T	.	.	PASS	END=197094279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	197094280	.	T	.	.	PASS	END=197094297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	197094298	.	T	.	.	PASS	END=197094308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	197094309	.	T	.	.	PASS	END=197094336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	197094337	.	T	.	.	PASS	END=197094353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	197094354	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:27:60
chr1	197094355	.	A	.	.	PASS	END=197094372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	197097569	.	A	.	.	PASS	END=197097612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	197097613	.	T	.	.	PASS	END=197097644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	197097645	.	C	.	.	PASS	END=197097768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	197097769	.	A	.	.	PASS	END=197097796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	197097797	.	T	.	.	PASS	END=197097846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	197098266	.	A	.	.	PASS	END=197098286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	197098287	.	A	.	.	PASS	END=197098313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	197098314	.	T	.	.	PASS	END=197098335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	197098336	.	C	.	.	PASS	END=197098348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	197098349	.	G	.	.	PASS	END=197098447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	197098448	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:62:60
chr1	197098449	.	T	.	.	PASS	END=197098457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	197098458	.	G	.	.	PASS	END=197098477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	197098478	.	T	.	.	PASS	END=197098496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	197098497	.	T	.	.	PASS	END=197098498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:60
chr1	197098994	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr1	197098995	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	197098996	.	C	.	.	PASS	END=197099000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	197099001	.	C	.	.	PASS	END=197099017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	197099018	.	G	.	.	PASS	END=197099031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	197099032	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:27:60
chr1	197099033	.	A	.	.	PASS	END=197099043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	197099044	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:18:60
chr1	197099045	.	C	.	.	PASS	END=197099046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	197099047	.	T	.	.	PASS	END=197099051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	197099052	.	A	.	.	PASS	END=197099074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	197099075	.	G	.	.	PASS	END=197099120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	197099121	.	A	.	.	PASS	END=197099200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	197099201	.	A	.	.	PASS	END=197099237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	197101364	.	A	.	.	PASS	END=197101412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	197101413	.	A	.	.	PASS	END=197101476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	197101477	.	G	.	.	PASS	END=197101533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	197102429	.	C	.	.	PASS	END=197102471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	197102472	.	C	.	.	PASS	END=197102487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	197102488	.	T	.	.	PASS	END=197102617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	197102618	.	T	.	.	PASS	END=197102623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	197102624	.	G	.	.	PASS	END=197102637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	197102638	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:99:60
chr1	197102639	.	T	.	.	PASS	END=197102673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	197102674	.	A	.	.	PASS	END=197102688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	197102689	.	T	.	.	PASS	END=197102716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	197102717	.	C	.	.	PASS	END=197102728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	197102729	.	G	.	.	PASS	END=197102776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	197104175	.	T	.	.	PASS	END=197104226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	197104227	.	T	.	.	PASS	END=197104306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	197104307	.	T	.	.	PASS	END=197104370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	197104371	.	A	.	.	PASS	END=197104397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	197104398	.	T	.	.	PASS	END=197104423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	197108846	.	G	.	.	PASS	END=197108904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	197108905	.	A	.	.	PASS	END=197108922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	197108923	.	A	.	.	PASS	END=197108932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	197108933	.	G	.	.	PASS	END=197108945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	197108946	.	A	G	1585.21	PASS	BaseQRankSum=1.296;DP=102;Dels=0.00;FS=5.798;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-0.725;QD=15.54;ReadPosRankSum=0.920;SB=-359.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:47,55:102:99:1615,0,1286:60:99:0.539
chr1	197108947	.	A	.	.	PASS	END=197109041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	197109042	.	C	T	3303.49	PASS	DP=122;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=9.6167;MQ=60;MQ0=0;QD=27.08;SB=-1931.60	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,122:122:99:3303,244,0:60:99:1.000
chr1	197109043	.	A	.	.	PASS	END=197109052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	197111410	.	A	.	.	PASS	END=197111426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	197111427	.	G	.	.	PASS	END=197111484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	197111485	.	T	.	.	PASS	END=197111514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	197111515	.	G	.	.	PASS	END=197111550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	197111551	.	T	.	.	PASS	END=197111597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	197111598	.	T	.	.	PASS	END=197111668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	197111669	.	A	.	.	PASS	END=197111748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:60
chr1	197111749	.	G	.	.	PASS	END=197111832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	197111833	.	C	.	.	PASS	END=197112019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	197112020	.	T	.	.	PASS	END=197112178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	197112179	.	C	.	.	PASS	END=197112315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	197112316	.	T	.	.	PASS	END=197112443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	197112444	.	A	.	.	PASS	END=197112459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	197112460	.	T	.	.	PASS	END=197112532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:268:99:60
chr1	197112533	.	G	A	9999.01	PASS	DP=323;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=16.2433;MQ=60;MQ0=0;QD=30.96;SB=-4732.19	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,323:323:99:9999,752,0:60:99:1.000
chr1	197112534	.	G	.	.	PASS	END=197112618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:265:99:60
chr1	197112619	.	T	.	.	PASS	END=197112663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	197112664	.	A	.	.	PASS	END=197112791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	197112792	.	T	.	.	PASS	END=197112810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	197112811	.	G	.	.	PASS	END=197112832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	197112833	.	T	.	.	PASS	END=197112892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	197112893	.	T	.	.	PASS	END=197112902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	197112903	.	G	.	.	PASS	END=197112936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	197112937	.	T	.	.	PASS	END=197112950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	197112951	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:59:60
chr1	197112952	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:90:60
chr1	197112953	.	G	.	.	PASS	END=197112955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	197112956	.	A	.	.	PASS	END=197112963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	197112964	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:57:60
chr1	197112965	.	A	.	.	PASS	END=197112978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	197112979	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:51:60
chr1	197112980	.	T	.	.	PASS	END=197112991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	197113036	.	T	.	.	PASS	END=197113059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:86:60
chr1	197113060	.	T	.	.	PASS	END=197113072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:88:60
chr1	197113073	.	G	A	1855.85	PASS	DP=57;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.8399;MQ=60;MQ0=0;QD=32.56;SB=-957.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,57:57:99:1889,144,0:60:99:1.000
chr1	197113074	.	G	.	.	PASS	END=197113164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:87:60
chr1	197113165	.	A	.	.	PASS	END=197113219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	197113220	.	T	.	.	PASS	END=197113258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	197113259	.	T	.	.	PASS	END=197113281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	197115220	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chr1	197115221	.	T	.	.	PASS	END=197115229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	197115230	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:16:60
chr1	197115231	.	G	.	.	PASS	END=197115240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	197115241	.	G	.	.	PASS	END=197115247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	197115248	.	A	.	.	PASS	END=197115249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	197115250	.	C	.	.	PASS	END=197115251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	197115252	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:27:60
chr1	197115253	.	G	.	.	PASS	END=197115258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:69:60
chr1	197115259	.	C	.	.	PASS	END=197115264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	197115265	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:72:60
chr1	197115266	.	C	.	.	PASS	END=197115273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	197115274	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr1	197115275	.	A	.	.	PASS	END=197115276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	197115277	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:30:60
chr1	197115278	.	A	.	.	PASS	END=197115294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	197115295	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:66:60
chr1	197115296	.	A	.	.	PASS	END=197115352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	197115353	.	T	.	.	PASS	END=197115371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	197115372	.	C	.	.	PASS	END=197115439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	197115440	.	T	.	.	PASS	END=197115496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:91:60
chr1	197115497	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:68:60
chr1	197115498	.	G	.	.	PASS	END=197115514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	197115515	.	C	.	.	PASS	END=197115526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	197115527	.	C	.	.	PASS	END=197115528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:68:60
chr1	197115529	.	C	.	.	PASS	END=197115542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	197115543	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:45:60
chr1	197115544	.	T	.	.	PASS	END=197115559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	197115560	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:54:60
chr1	197115561	.	T	.	.	PASS	END=197115589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	197115590	.	G	.	.	PASS	END=197115591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	197115592	.	T	.	.	PASS	END=197115602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	197115603	.	C	.	.	PASS	END=197115615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	197115616	.	C	.	.	PASS	END=197115618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	197128487	.	A	.	.	PASS	END=197128516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	197128517	.	T	.	.	PASS	END=197128534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	197128535	.	C	.	.	PASS	END=197128571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	197128572	.	C	.	.	PASS	END=197128612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	197128613	.	A	.	.	PASS	END=197128797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	197128798	.	A	.	.	PASS	END=197128828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr1	197128829	.	G	.	.	PASS	END=197128956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:282:99:60
chr1	197128957	.	A	.	.	PASS	END=197129001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	197129002	.	C	.	.	PASS	END=197129059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	197129060	.	T	.	.	PASS	END=197129146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	197141285	.	T	.	.	PASS	END=197141373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	197141374	.	T	.	.	PASS	END=197141384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	197144138	.	A	.	.	PASS	END=197144229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	197144230	.	T	.	.	PASS	END=197144247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	197145692	.	A	.	.	PASS	END=197145792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	197145793	.	A	.	.	PASS	END=197145850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	197147545	.	A	.	.	PASS	END=197147621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	197147622	.	A	.	.	PASS	END=197147644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	197150076	.	A	.	.	PASS	END=197150159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	197150160	.	C	.	.	PASS	END=197150233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	197150234	.	A	.	.	PASS	END=197150249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	197157380	.	T	.	.	PASS	END=197157424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	197157425	.	G	.	.	PASS	END=197157467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	197157468	.	A	.	.	PASS	END=197157499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	197157500	.	G	.	.	PASS	END=197157526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	197157527	.	G	.	.	PASS	END=197157556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	197157557	.	A	.	.	PASS	END=197157571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:80:60
chr1	197159820	.	A	.	.	PASS	END=197159976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	197160820	.	G	.	.	PASS	END=197160861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	197160862	.	G	.	.	PASS	END=197160927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	197160928	.	T	.	.	PASS	END=197160980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	197160981	.	T	.	.	PASS	END=197161031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	197168482	.	A	.	.	PASS	END=197168544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	197168545	.	A	.	.	PASS	END=197168555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	197168556	.	G	.	.	PASS	END=197168636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	197168637	.	G	.	.	PASS	END=197168697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	197168698	.	A	.	.	PASS	END=197168907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	197168908	.	G	.	.	PASS	END=197169061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	197169062	.	G	.	.	PASS	END=197169083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	197169084	.	A	.	.	PASS	END=197169292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	197169293	.	A	.	.	PASS	END=197169487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	197169488	.	G	.	.	PASS	END=197169542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr1	197169543	.	C	.	.	PASS	END=197169605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:306:99:60
chr1	197237492	.	C	.	.	PASS	END=197237496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	197237497	.	A	.	.	PASS	END=197237498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:60:60
chr1	197237499	.	C	.	.	PASS	END=197237501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	197237502	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:30:60
chr1	197237503	.	C	.	.	PASS	END=197237519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	197237520	.	G	.	.	PASS	END=197237540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	197237541	.	C	.	.	PASS	END=197237652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:90:60
chr1	197237653	.	C	.	.	PASS	END=197237663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	197297501	.	A	.	.	PASS	END=197297539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	197297540	.	A	T	724.63	PASS	BaseQRankSum=0.675;DP=38;Dels=0.00;FS=2.707;HRun=5;HaplotypeScore=3.8381;MQ=60;MQ0=0;MQRankSum=0.581;QD=19.07;ReadPosRankSum=-1.052;SB=-117.95	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:12,26:38:99:755,0,314:60:99:0.684
chr1	197297541	.	T	.	.	PASS	END=197297543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	197297544	.	C	.	.	PASS	END=197297547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	197297548	.	G	.	.	PASS	END=197297561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	197297562	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:48:60
chr1	197297563	.	A	.	.	PASS	END=197297575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	197297576	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:99:60
chr1	197297577	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:63:60
chr1	197297578	.	A	.	.	PASS	END=197297598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	197297599	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr1	197297600	.	A	.	.	PASS	END=197297639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	197297640	.	T	.	.	PASS	END=197297687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	197297688	.	C	.	.	PASS	END=197297867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	197297868	.	T	.	.	PASS	END=197297920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	197297921	.	T	.	.	PASS	END=197297960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	197297961	.	G	.	.	PASS	END=197297987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	197297988	.	T	.	.	PASS	END=197298085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	197298086	.	T	.	.	PASS	END=197298114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	197298115	.	T	.	.	PASS	END=197298146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	197298147	.	T	.	.	PASS	END=197298164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	197298165	.	T	.	.	PASS	END=197298176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	197298177	.	T	.	.	PASS	END=197298184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	197313360	.	A	.	.	PASS	END=197313414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	197313415	.	A	.	.	PASS	END=197313479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	197313480	.	A	.	.	PASS	END=197313540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	197313541	.	C	.	.	PASS	END=197313551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	197313552	.	A	.	.	PASS	END=197313562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	197313563	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:36:60
chr1	197313564	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:75:60
chr1	197313565	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:44:60
chr1	197313566	.	C	.	.	PASS	END=197313584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	197313585	.	T	.	.	PASS	END=197313594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	197313595	.	T	.	.	PASS	END=197313602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	197313603	.	A	.	.	PASS	END=197313621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	197313622	.	C	.	.	PASS	END=197313623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	197313624	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	197313625	.	T	.	.	PASS	END=197313628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	197313629	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	197313630	.	G	.	.	PASS	END=197313655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	197313656	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	197313657	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	197316419	.	C	.	.	PASS	END=197316423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	197316424	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:54:60
chr1	197316425	.	T	.	.	PASS	END=197316434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	197316435	.	T	C	490.01	PASS	BaseQRankSum=-1.062;DP=45;Dels=0.00;FS=7.735;HRun=1;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-1.245;QD=10.89;ReadPosRankSum=-2.159;SB=-291.36	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:20,25:45:99:520,0,463:60:99:0.556
chr1	197316436	.	A	.	.	PASS	END=197316487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	197316488	.	G	.	.	PASS	END=197316503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	197316504	.	G	.	.	PASS	END=197316585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	197316586	.	A	.	.	PASS	END=197316625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	197316626	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:76:60
chr1	197316627	.	T	.	.	PASS	END=197316643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	197316644	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:63:60
chr1	197316645	.	A	.	.	PASS	END=197316660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	197325910	.	T	.	.	PASS	END=197325918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:60
chr1	197325919	.	A	.	.	PASS	END=197325922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	197325923	.	C	.	.	PASS	END=197325927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	197325928	.	A	.	.	PASS	END=197325929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	197325930	.	T	.	.	PASS	END=197325954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	197325955	.	A	.	.	PASS	END=197325959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	197325960	.	G	.	.	PASS	END=197325969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	197325970	.	G	.	.	PASS	END=197325976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	197325977	.	G	.	.	PASS	END=197326006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	197326007	.	T	.	.	PASS	END=197326043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	197326044	.	T	.	.	PASS	END=197326072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	197326073	.	T	.	.	PASS	END=197326123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	197326124	.	C	.	.	PASS	END=197326181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	197326182	.	T	.	.	PASS	END=197326208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	197326209	.	C	.	.	PASS	END=197326219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	197326220	.	T	.	.	PASS	END=197326233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	197383012	.	A	.	.	LowGQX	END=197383130	GT	./.
chr1	197390079	.	T	.	.	PASS	END=197390121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	197390122	.	T	.	.	PASS	END=197390138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	197390139	.	G	.	.	PASS	END=197390162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	197390163	.	C	.	.	PASS	END=197390211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	197390212	.	T	.	.	PASS	END=197390241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	197390242	.	T	.	.	PASS	END=197390367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	197390368	.	A	G	8037.11	PASS	DP=253;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=14.2565;MQ=60;MQ0=0;QD=31.77;SB=-4234.84	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,253:253:99:8037,626,0:60:99:1.000
chr1	197390369	.	T	.	.	PASS	END=197390440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	197390441	.	T	.	.	PASS	END=197390483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	197390484	.	A	.	.	PASS	END=197390511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr1	197390512	.	G	.	.	PASS	END=197390686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:284:99:60
chr1	197390687	.	G	.	.	PASS	END=197390824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:372:99:60
chr1	197390825	.	A	.	.	PASS	END=197390930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:381:99:60
chr1	197390931	.	T	.	.	PASS	END=197390975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:302:99:60
chr1	197390976	.	A	.	.	PASS	END=197391009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	197391010	.	A	.	.	PASS	END=197391032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	197391033	.	T	.	.	PASS	END=197391060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	197391061	.	C	.	.	PASS	END=197391076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	197391077	.	T	.	.	PASS	END=197391110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	197391111	.	C	.	.	PASS	END=197391133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	197391134	.	A	.	.	PASS	END=197391137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	197396533	.	C	.	.	PASS	END=197396555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	197396556	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:36:60
chr1	197396557	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:48:60
chr1	197396558	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr1	197396559	.	C	.	.	PASS	END=197396569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	197396570	.	T	.	.	PASS	END=197396573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	197396574	.	G	.	.	PASS	END=197396581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	197396582	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:60
chr1	197396583	.	G	.	.	PASS	END=197396584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	197396585	.	G	.	.	PASS	END=197396592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	197396593	.	C	.	.	PASS	END=197396594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	197396595	.	G	.	.	PASS	END=197396596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	197396597	.	C	.	.	PASS	END=197396598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	197396599	.	G	.	.	PASS	END=197396605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	197396606	.	C	.	.	PASS	END=197396609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	197396610	.	G	.	.	PASS	END=197396613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	197396614	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:42:60
chr1	197396615	.	C	.	.	PASS	END=197396621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	197396622	.	G	.	.	PASS	END=197396631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	197396632	.	T	.	.	PASS	END=197396647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr1	197396648	.	G	.	.	PASS	END=197396649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	197396650	.	G	.	.	PASS	END=197396671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	197396672	.	C	.	.	PASS	END=197396707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	197396708	.	A	.	.	PASS	END=197396733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	197396734	.	A	.	.	PASS	END=197396751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	197396752	.	G	.	.	PASS	END=197396797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	197396798	.	A	.	.	PASS	END=197396875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:268:99:60
chr1	197396876	.	G	.	.	PASS	END=197396907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:287:99:60
chr1	197396908	.	C	.	.	PASS	END=197397026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr1	197397027	.	A	.	.	PASS	END=197397087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	197397088	.	T	.	.	PASS	END=197397107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	197397108	.	T	.	.	PASS	END=197397146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	197397147	.	A	.	.	PASS	END=197397163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	197397164	.	T	.	.	PASS	END=197397182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr1	197398103	.	G	.	.	LowGQX	END=197398177	GT	./.
chr1	197398178	.	C	.	.	LowGQX	END=197398182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197398183	.	G	.	.	LowGQX	END=197398200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	197398201	.	C	.	.	LowGQX	END=197398238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	197398528	.	T	.	.	PASS	END=197398569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	197398570	.	T	.	.	PASS	END=197398577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	197398578	.	G	.	.	PASS	END=197398611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	197398612	.	T	.	.	PASS	END=197398678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	197398679	.	A	.	.	PASS	END=197398719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:79:60
chr1	197398720	.	C	.	.	PASS	END=197398722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	197398723	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:67:60
chr1	197398724	.	C	.	.	PASS	END=197398726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	197398727	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:60:60
chr1	197398728	.	G	.	.	PASS	END=197398729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	197398730	.	T	.	.	PASS	END=197398754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	197398755	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:66:60
chr1	197398756	.	T	.	.	PASS	END=197398768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	197398769	.	C	.	.	PASS	END=197398795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	197403785	.	C	.	.	PASS	END=197403814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	197403815	.	A	.	.	PASS	END=197403844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	197403845	.	A	.	.	PASS	END=197403911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	197403912	.	C	.	.	PASS	END=197403952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	197403953	.	T	.	.	PASS	END=197404051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	197404052	.	T	.	.	PASS	END=197404099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	197404100	.	A	.	.	PASS	END=197404127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	197404128	.	G	.	.	PASS	END=197404357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:293:99:60
chr1	197404358	.	A	.	.	PASS	END=197404419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:297:99:60
chr1	197404420	.	T	.	.	PASS	END=197404472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	197404473	.	T	.	.	PASS	END=197404500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	197404501	.	T	.	.	PASS	END=197404526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	197404527	.	C	.	.	PASS	END=197404555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	197404556	.	A	.	.	PASS	END=197404582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	197404583	.	C	.	.	PASS	END=197404594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	197404595	.	C	.	.	PASS	END=197404614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	197404615	.	G	.	.	PASS	END=197404623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	197404624	.	T	.	.	PASS	END=197404630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	197404631	.	T	.	.	PASS	END=197404636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	197404637	.	T	.	.	PASS	END=197404641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	197404642	.	A	.	.	LowGQX	END=197404659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	197404660	.	T	.	.	LowGQX	END=197404676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	197404677	.	C	.	.	LowGQX	END=197404687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	197404688	.	A	.	.	LowGQX	END=197404692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	197404693	.	A	.	.	LowGQX	END=197404694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	197404695	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	197404696	.	G	.	.	LowGQX	END=197404702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	197404703	.	C	.	.	LowGQX	END=197404706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	197404707	.	C	.	.	LowGQX	END=197404712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	197404713	.	T	.	.	LowGQX	END=197404715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	197404716	.	T	.	.	LowGQX	END=197404717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	197404718	.	G	.	.	LowGQX	END=197404722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	197404723	.	T	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	197404724	.	T	.	.	LowGQX	END=197404725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	197404726	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	197404727	.	C	.	.	LowGQX	END=197404735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	197404736	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	197404737	.	T	.	.	LowGQX	END=197404753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	197404754	.	G	.	.	LowGQX	END=197404755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	197404756	.	C	.	.	LowGQX	END=197404767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	197404768	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	197404769	.	G	.	.	LowGQX	END=197404770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	197404771	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	197404772	.	C	.	.	LowGQX	END=197404778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	197404779	.	G	.	.	LowGQX	END=197404785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	197404786	.	T	.	.	LowGQX	END=197404793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	197407626	.	G	.	.	PASS	END=197407636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	197407637	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:42:60
chr1	197407638	.	C	.	.	PASS	END=197407662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	197407663	.	T	.	.	PASS	END=197407669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	197407670	.	T	.	.	PASS	END=197407698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	197407699	.	G	.	.	PASS	END=197407816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	197407817	.	T	.	.	PASS	END=197407822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	197407823	.	C	.	.	PASS	END=197407843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	197407844	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:74:60
chr1	197407845	.	T	.	.	PASS	END=197407857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	197411245	.	C	.	.	PASS	END=197411306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	197411307	.	A	.	.	PASS	END=197411348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	197411349	.	T	.	.	PASS	END=197411365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	197411366	.	A	.	.	PASS	END=197411392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	197411393	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:66:60
chr1	197411394	.	C	.	.	PASS	END=197411399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	197411400	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:51:60
chr1	197411401	.	T	.	.	PASS	END=197411428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:91:60
chr1	197411429	.	A	.	.	PASS	END=197411454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	197411455	.	A	.	.	PASS	END=197411461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	197411462	.	C	.	.	PASS	END=197411474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	197411475	.	A	.	.	PASS	END=197411488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	197411489	.	C	.	.	PASS	END=197411506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	197411507	.	G	.	.	PASS	END=197411526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	197411527	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	197411528	.	G	.	.	PASS	END=197411529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	197411530	.	T	.	.	LowGQX	END=197411536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	197411537	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr1	197411538	.	A	.	.	LowGQX	END=197411544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	197411545	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	197446630	.	G	.	.	LowGQX	END=197446649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	197446650	.	T	.	.	LowGQX	END=197446653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	197446654	.	T	.	.	LowGQX	END=197446658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	197446659	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr1	197446660	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	197446661	.	C	.	.	LowGQX	END=197446664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	197446665	.	G	.	.	LowGQX	END=197446669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	197446670	.	T	.	.	PASS	END=197446673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	197446674	.	A	.	.	PASS	END=197446676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	197446677	.	G	.	.	PASS	END=197446681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	197446682	.	G	.	.	PASS	END=197446691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:78:60
chr1	197446692	.	A	.	.	PASS	END=197446729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr1	197446743	.	T	.	.	PASS	END=197446777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	197446778	.	A	.	.	PASS	END=197446836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	197446837	.	C	.	.	PASS	END=197446892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	197446893	.	A	.	.	PASS	END=197446944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	197446945	.	A	.	.	PASS	END=197446990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	197446991	.	A	.	.	PASS	END=197446999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	197447000	.	A	.	.	PASS	END=197447021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	197447022	.	C	.	.	PASS	END=197447043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	197447044	.	A	.	.	PASS	END=197447045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:54:60
chr1	197447046	.	T	.	.	PASS	END=197447047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	197447048	.	T	.	.	LowGQX	END=197447050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	197447051	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	197447052	.	T	.	.	LowGQX	END=197447053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	197447054	.	T	.	.	LowGQX	END=197447056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	197447057	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	197447058	.	G	.	.	LowGQX	END=197447060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	197479588	.	A	.	.	LowGQX	END=197480104	GT	./.
chr1	197480856	.	A	.	.	LowGQX	END=197480870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197480871	.	T	.	.	LowGQX	END=197481026	GT	./.
chr1	197481027	.	C	.	.	LowGQX	END=197481076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197481993	.	T	.	.	LowGQX	END=197482087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197482088	.	A	.	.	LowGQX	.	GT	./.
chr1	197482089	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197482090	.	A	.	.	LowGQX	END=197482092	GT	./.
chr1	197509042	.	A	.	.	LowGQX	END=197509203	GT	./.
chr1	197510068	.	A	.	.	LowGQX	END=197510107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197510108	.	T	.	.	LowGQX	END=197510167	GT	./.
chr1	197514980	.	T	.	.	LowGQX	END=197515099	GT	./.
chr1	197515100	.	G	.	.	LowGQX	END=197515135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197515782	.	A	.	.	LowGQX	END=197515932	GT	./.
chr1	197522069	.	A	.	.	LowGQX	END=197522244	GT	./.
chr1	197552280	.	A	.	.	LowGQX	END=197552385	GT	./.
chr1	197564336	.	A	.	.	LowGQX	END=197564379	GT	./.
chr1	197564380	.	A	.	.	LowGQX	END=197564399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197564400	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	197564401	.	C	.	.	LowGQX	END=197564412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	197564413	.	A	.	.	LowGQX	.	GT	./.
chr1	197564414	.	T	.	.	LowGQX	END=197564433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	197564434	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	197564435	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	197564436	.	T	.	.	LowGQX	.	GT	./.
chr1	197564437	.	C	.	.	LowGQX	END=197564439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	197564440	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	197564441	.	A	.	.	LowGQX	END=197564455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	197564456	.	G	.	.	LowGQX	.	GT	./.
chr1	197564457	.	C	.	.	LowGQX	END=197564465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	197576126	.	G	.	.	LowGQX	END=197576188	GT	./.
chr1	197576189	.	G	.	.	LowGQX	END=197576191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576192	.	T	.	.	LowGQX	.	GT	./.
chr1	197576193	.	T	.	.	LowGQX	END=197576194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576195	.	A	.	.	LowGQX	.	GT	./.
chr1	197576196	.	T	.	.	LowGQX	END=197576202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576203	.	C	.	.	LowGQX	END=197576204	GT	./.
chr1	197576205	.	C	.	.	LowGQX	END=197576210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576211	.	T	.	.	LowGQX	END=197576212	GT	./.
chr1	197576213	.	G	.	.	LowGQX	END=197576216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576217	.	G	.	.	LowGQX	.	GT	./.
chr1	197576218	.	G	.	.	LowGQX	END=197576220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576221	.	G	.	.	LowGQX	END=197576222	GT	./.
chr1	197576223	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576224	.	C	.	.	LowGQX	.	GT	./.
chr1	197576225	.	A	.	.	LowGQX	END=197576227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576228	.	T	.	.	LowGQX	END=197576229	GT	./.
chr1	197576230	.	A	.	.	LowGQX	END=197576232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576233	.	A	.	.	LowGQX	END=197576234	GT	./.
chr1	197576235	.	A	.	.	LowGQX	END=197576236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576237	.	G	.	.	LowGQX	.	GT	./.
chr1	197576238	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576239	.	T	.	.	LowGQX	.	GT	./.
chr1	197576240	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576241	.	A	.	.	LowGQX	.	GT	./.
chr1	197576242	.	T	.	.	LowGQX	END=197576245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576246	.	A	.	.	LowGQX	.	GT	./.
chr1	197576247	.	A	.	.	LowGQX	END=197576250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576251	.	G	.	.	LowGQX	END=197576255	GT	./.
chr1	197576256	.	T	.	.	LowGQX	END=197576257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576258	.	T	.	.	LowGQX	.	GT	./.
chr1	197576259	.	C	.	.	LowGQX	END=197576263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576264	.	T	.	.	LowGQX	.	GT	./.
chr1	197576265	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576266	.	T	.	.	LowGQX	.	GT	./.
chr1	197576267	.	A	.	.	LowGQX	END=197576273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576274	.	C	.	.	LowGQX	.	GT	./.
chr1	197576275	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576276	.	A	.	.	LowGQX	.	GT	./.
chr1	197576277	.	C	.	.	LowGQX	END=197576278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576279	.	T	.	.	LowGQX	.	GT	./.
chr1	197576280	.	C	.	.	LowGQX	END=197576281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576282	.	T	.	.	LowGQX	.	GT	./.
chr1	197576283	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576284	.	C	.	.	LowGQX	.	GT	./.
chr1	197576285	.	A	.	.	LowGQX	END=197576286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576287	.	T	.	.	LowGQX	.	GT	./.
chr1	197576288	.	G	.	.	LowGQX	END=197576291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576292	.	T	.	.	LowGQX	END=197576293	GT	./.
chr1	197576294	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576295	.	T	.	.	LowGQX	END=197576296	GT	./.
chr1	197576297	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197576298	.	T	.	.	LowGQX	.	GT	./.
chr1	197576299	.	C	.	.	LowGQX	END=197576306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	197580979	.	G	.	.	LowGQX	END=197581133	GT	./.
chr1	197586787	.	A	.	.	LowGQX	END=197586946	GT	./.
chr1	197611839	.	A	.	.	LowGQX	END=197611953	GT	./.
chr1	197614797	.	A	.	.	LowGQX	END=197614947	GT	./.
chr1	197616114	.	G	.	.	LowGQX	END=197616264	GT	./.
chr1	197621303	.	G	.	.	LowGQX	END=197621455	GT	./.
chr1	197627358	.	A	.	.	LowGQX	END=197627514	GT	./.
chr1	197641165	.	A	.	.	LowGQX	END=197641288	GT	./.
chr1	197643168	.	T	.	.	LowGQX	END=197643324	GT	./.
chr1	197684079	.	A	.	.	LowGQX	END=197684232	GT	./.
chr1	197704692	.	T	.	.	LowGQX	END=197704926	GT	./.
chr1	197741980	.	A	.	.	LowGQX	END=197741989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	197741990	.	A	.	.	LowGQX	END=197742079	GT	./.
chr1	197742104	.	A	.	.	LowGQX	END=197742203	GT	./.
chr1	197744167	.	C	.	.	LowGQX	END=197744326	GT	./.
chr1	197871779	.	C	.	.	LowGQX	END=197872043	GT	./.
chr1	197874925	.	G	.	.	LowGQX	END=197875027	GT	./.
chr1	197876208	.	C	.	.	LowGQX	END=197876364	GT	./.
chr1	197881626	.	A	.	.	LowGQX	END=197881640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197881641	.	T	.	.	LowGQX	END=197881642	GT	./.
chr1	197881643	.	C	.	.	LowGQX	END=197881646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197881647	.	C	.	.	LowGQX	.	GT	./.
chr1	197881648	.	C	.	.	LowGQX	END=197881665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197881666	.	T	.	.	LowGQX	.	GT	./.
chr1	197881667	.	G	.	.	LowGQX	END=197881725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197885795	.	A	.	.	LowGQX	END=197885894	GT	./.
chr1	197886489	.	C	.	.	LowGQX	END=197886688	GT	./.
chr1	197886932	.	T	.	.	LowGQX	END=197887129	GT	./.
chr1	197887422	.	A	.	.	LowGQX	END=197887521	GT	./.
chr1	197889100	.	A	.	.	LowGQX	END=197889296	GT	./.
chr1	197889297	.	T	.	.	LowGQX	END=197889306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	197890432	.	A	.	.	LowGQX	END=197890791	GT	./.
chr1	197896719	.	A	.	.	LowGQX	END=197896925	GT	./.
chr1	197898130	.	A	.	.	LowGQX	END=197898391	GT	./.
chr1	197901027	.	T	.	.	LowGQX	END=197901126	GT	./.
chr1	198201690	.	A	.	.	LowGQX	END=198201789	GT	./.
chr1	198222168	.	A	.	.	LowGQX	END=198222292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	198222293	.	G	.	.	LowGQX	END=198222294	GT	./.
chr1	198222295	.	T	.	.	LowGQX	END=198222312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	198225457	.	G	.	.	LowGQX	END=198225555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	198225556	.	A	.	.	LowGQX	END=198225619	GT	./.
chr1	198231633	.	T	.	.	LowGQX	END=198231646	GT	./.
chr1	198231647	.	A	.	.	LowGQX	END=198231693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	198231694	.	T	.	.	LowGQX	.	GT	./.
chr1	198231695	.	C	.	.	LowGQX	END=198231786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	198233253	.	A	.	.	LowGQX	END=198233412	GT	./.
chr1	198247089	.	A	.	.	LowGQX	END=198247248	GT	./.
chr1	198248082	.	A	.	.	LowGQX	END=198248193	GT	./.
chr1	198262013	.	T	.	.	LowGQX	END=198262172	GT	./.
chr1	198266255	.	A	.	.	LowGQX	END=198266414	GT	./.
chr1	198288540	.	A	.	.	LowGQX	END=198288566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	198288567	.	T	.	.	LowGQX	END=198288654	GT	./.
chr1	198492489	.	C	.	.	LowGQX	END=198492696	GT	./.
chr1	198498152	.	T	.	.	LowGQX	END=198498260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	198498261	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	198498262	.	A	.	.	LowGQX	END=198498294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	198498295	.	C	.	.	LowGQX	.	GT	./.
chr1	198498296	.	A	.	.	LowGQX	END=198498298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	198498299	.	C	.	.	LowGQX	END=198498300	GT	./.
chr1	198498301	.	C	.	.	LowGQX	END=198498304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	198498305	.	C	.	.	LowGQX	.	GT	./.
chr1	198498306	.	C	.	.	LowGQX	END=198498310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	198498311	.	C	.	.	LowGQX	END=198498312	GT	./.
chr1	198498313	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	198505782	.	G	.	.	LowGQX	END=198505836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	198505837	.	G	.	.	LowGQX	.	GT	./.
chr1	198505838	.	G	.	.	LowGQX	END=198505865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	198505866	.	G	.	.	LowGQX	.	GT	./.
chr1	198505867	.	G	.	.	LowGQX	END=198505881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	198509690	.	G	.	.	LowGQX	END=198509788	GT	./.
chr1	198509789	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	198608352	.	T	.	.	PASS	END=198608484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	198608485	.	T	.	.	PASS	END=198608522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	198661415	.	G	.	.	PASS	END=198661470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	198661471	.	T	.	.	PASS	END=198661524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:96:60
chr1	198663116	.	C	.	.	LowGQX	END=198663273	GT	./.
chr1	198663274	.	G	.	.	LowGQX	END=198663310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	198665790	.	T	.	.	PASS	END=198665843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	198665844	.	T	.	.	PASS	END=198665864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	198665865	.	G	.	.	PASS	END=198665883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr1	198665884	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:67:60
chr1	198665885	.	C	.	.	PASS	END=198665993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:92:60
chr1	198665994	.	T	.	.	PASS	END=198666015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	198666016	.	T	.	.	PASS	END=198666033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	198666034	.	C	.	.	PASS	END=198666035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	198666036	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:36:60
chr1	198666037	.	A	.	.	PASS	END=198666053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	198666054	.	T	.	.	PASS	END=198666069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	198666070	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:21:60
chr1	198666071	.	A	.	.	PASS	END=198666089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	198668642	.	T	.	.	PASS	END=198668651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	198668652	.	T	.	.	PASS	END=198668655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	198668656	.	G	.	.	PASS	END=198668660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	198668661	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:28:60
chr1	198668662	.	C	.	.	PASS	END=198668678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	198668679	.	C	.	.	PASS	END=198668688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	198668689	.	T	.	.	PASS	END=198668703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	198668704	.	G	.	.	PASS	END=198668749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	198668750	.	C	.	.	PASS	END=198668825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	198668826	.	T	.	.	PASS	END=198668853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	198668854	.	T	.	.	PASS	END=198668872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	198668873	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:57:60
chr1	198668874	.	A	.	.	PASS	END=198668884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	198671465	.	C	.	.	PASS	END=198671490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	198671491	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:73:60
chr1	198671492	.	T	.	.	PASS	END=198671530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	198671531	.	G	.	.	PASS	END=198671580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:96:60
chr1	198671581	.	A	.	.	PASS	END=198671620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	198671621	.	C	.	.	PASS	END=198671651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:85:60
chr1	198671652	.	C	.	.	PASS	END=198671656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	198671657	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:67:60
chr1	198671658	.	A	.	.	PASS	END=198671665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	198671666	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:57:60
chr1	198671667	.	T	.	.	PASS	END=198671676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	198671677	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:53:60
chr1	198671678	.	A	.	.	PASS	END=198671684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	198671685	.	T	.	.	PASS	END=198671697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	198671698	.	A	.	.	PASS	END=198671701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	198671702	.	T	.	.	PASS	END=198671710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	198672376	.	T	.	.	PASS	END=198672411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	198672412	.	T	.	.	PASS	END=198672513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	198672514	.	T	.	.	PASS	END=198672551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	198672552	.	T	.	.	PASS	END=198672563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	198672564	.	A	.	.	PASS	END=198672576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	198673550	.	G	.	.	PASS	END=198673591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	198673592	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:70:60
chr1	198673593	.	C	.	.	PASS	END=198673622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	198673623	.	A	.	.	PASS	END=198673683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	198675812	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:66:60
chr1	198675813	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:48:60
chr1	198675814	.	G	.	.	PASS	END=198675828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	198675829	.	G	.	.	PASS	END=198675839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	198675840	.	C	.	.	PASS	END=198675849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	198675850	.	T	.	.	PASS	END=198675878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	198675879	.	C	.	.	PASS	END=198675892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	198675893	.	A	.	.	PASS	END=198675928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	198675929	.	A	.	.	PASS	END=198675962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	198675963	.	C	.	.	PASS	END=198676042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	198676043	.	C	.	.	PASS	END=198676064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	198676065	.	A	.	.	PASS	END=198676075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	198676076	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:72:60
chr1	198676077	.	A	.	.	PASS	END=198676113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	198676114	.	A	.	.	PASS	END=198676132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	198677211	.	G	.	.	PASS	END=198677222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	198677223	.	G	.	.	PASS	END=198677252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	198677253	.	T	.	.	PASS	END=198677367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	198677368	.	T	.	.	PASS	END=198677374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	198677375	.	T	.	.	PASS	END=198677403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	198677404	.	A	.	.	PASS	END=198677436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	198677437	.	T	.	.	PASS	END=198677441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	198678765	.	T	.	.	PASS	END=198678799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	198678800	.	T	.	.	PASS	END=198678834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:83:60
chr1	198678835	.	T	.	.	PASS	END=198678877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	198678878	.	A	.	.	PASS	END=198678933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	198678934	.	T	.	.	PASS	END=198678978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	198678979	.	G	.	.	PASS	END=198679004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	198682031	.	T	.	.	PASS	END=198682041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	198682042	.	T	.	.	PASS	END=198682065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	198682066	.	C	.	.	PASS	END=198682081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	198682082	.	G	.	.	PASS	END=198682174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:85:60
chr1	198682175	.	T	.	.	PASS	END=198682232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	198682233	.	A	.	.	PASS	END=198682252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	198685760	.	G	.	.	PASS	END=198685771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	198685772	.	T	.	.	PASS	END=198685801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	198685802	.	T	.	.	PASS	END=198685838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	198685839	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:75:60
chr1	198685840	.	C	.	.	PASS	END=198685899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	198685900	.	G	.	.	PASS	END=198685942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	198685943	.	T	.	.	PASS	END=198685966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	198685967	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:67:60
chr1	198685968	.	T	.	.	PASS	END=198686020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	198687172	.	A	.	.	PASS	END=198687222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	198687223	.	C	.	.	PASS	END=198687250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	198687251	.	C	.	.	PASS	END=198687264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	198687265	.	A	.	.	PASS	END=198687283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	198687284	.	G	.	.	PASS	END=198687312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:250:99:60
chr1	198687313	.	C	.	.	PASS	END=198687418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:304:99:60
chr1	198687419	.	C	.	.	PASS	END=198687450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	198687451	.	A	.	.	PASS	END=198687460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	198687461	.	T	.	.	PASS	END=198687465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	198687466	.	A	.	.	PASS	END=198687477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	198687478	.	T	.	.	PASS	END=198687482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	198691494	.	T	.	.	PASS	END=198691566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	198691567	.	A	.	.	PASS	END=198691634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	198691635	.	A	.	.	PASS	END=198691655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	198691656	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:55:60
chr1	198697418	.	T	.	.	PASS	END=198697474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	198697475	.	C	.	.	PASS	END=198697504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	198697505	.	T	.	.	PASS	END=198697595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	198697596	.	T	.	.	PASS	END=198697625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	198697626	.	G	.	.	PASS	END=198697628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	198698215	.	G	.	.	PASS	END=198698278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:85:59
chr1	198698279	.	C	.	.	PASS	END=198698335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	198698336	.	C	.	.	PASS	END=198698352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:94:60
chr1	198700695	.	C	.	.	PASS	END=198700699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	198700700	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:60
chr1	198700701	.	T	.	.	PASS	END=198700728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	198700729	.	C	.	.	PASS	END=198700766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	198700767	.	A	.	.	PASS	END=198700860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	198700861	.	T	.	.	PASS	END=198700906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	198701378	.	A	.	.	PASS	END=198701386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:92:60
chr1	198701387	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:75:60
chr1	198701388	.	C	.	.	PASS	END=198701396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	198701397	.	G	.	.	PASS	END=198701432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	198701433	.	T	.	.	PASS	END=198701473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	198701474	.	A	.	.	PASS	END=198701564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	198701565	.	A	.	.	PASS	END=198701683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	198701684	.	A	.	.	PASS	END=198701729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	198701730	.	A	.	.	PASS	END=198701736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	198703273	.	T	.	.	PASS	END=198703310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	198703311	.	T	.	.	PASS	END=198703434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	198703435	.	C	.	.	PASS	END=198703476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	198703477	.	G	.	.	PASS	END=198703567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	198703568	.	A	.	.	PASS	END=198703586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	198703587	.	T	.	.	PASS	END=198703597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	198703598	.	A	.	.	PASS	END=198703605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	198704205	.	A	.	.	PASS	END=198704369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	198704370	.	A	.	.	PASS	END=198704431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	198704432	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:145:99:60
chr1	198710947	.	A	.	.	PASS	END=198710992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	198710993	.	A	.	.	PASS	END=198711036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	198711037	.	C	.	.	PASS	END=198711196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	198711310	.	T	.	.	PASS	END=198711351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	198711352	.	G	.	.	PASS	END=198711448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	198711449	.	T	.	.	PASS	END=198711479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	198711480	.	T	.	.	PASS	END=198711504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	198711505	.	T	.	.	PASS	END=198711509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	198711510	.	T	.	.	PASS	END=198711517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	198711518	.	T	.	.	PASS	END=198711522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	198711523	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:42:60
chr1	198711524	.	T	.	.	PASS	END=198711547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	198713132	.	G	.	.	PASS	END=198713136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	198713137	.	C	.	.	PASS	END=198713151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	198713152	.	T	.	.	PASS	END=198713182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	198713183	.	G	.	.	PASS	END=198713212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	198713213	.	G	.	.	PASS	END=198713267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	198713268	.	A	.	.	PASS	END=198713313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	198713314	.	A	.	.	PASS	END=198713340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	198713341	.	A	.	.	PASS	END=198713383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	198717187	.	G	.	.	PASS	END=198717203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	198717204	.	A	.	.	PASS	END=198717210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	198717211	.	T	.	.	PASS	END=198717218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	198717219	.	T	.	.	PASS	END=198717234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:59
chr1	198717235	.	C	.	51.05	LowGQX	DP=30;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:21:30:21.05:59:21
chr1	198717236	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:48:59
chr1	198717237	.	G	.	60.05	PASS	DP=30;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:24:30:30.06:59:30
chr1	198717238	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:39:59
chr1	198717239	.	G	.	66.07	PASS	DP=30;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:24:30:36.08:59:36
chr1	198717240	.	A	.	.	PASS	END=198717241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:36:59
chr1	198717242	.	T	.	.	PASS	END=198717243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:59
chr1	198717244	.	C	.	.	PASS	END=198717245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:30:59
chr1	198717246	.	T	.	.	PASS	END=198717247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:48:59
chr1	198717248	.	C	.	54.07	LowGQX	DP=30;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:22:30:24.08:59:24
chr1	198717249	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:69:59
chr1	198717250	.	T	.	.	PASS	END=198717255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:51:59
chr1	198717256	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:78:59
chr1	198717257	.	G	.	.	PASS	END=198717258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:57:59
chr1	198717259	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:84:59
chr1	198717260	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:60:59
chr1	198717261	.	G	.	.	PASS	END=198717266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:69:59
chr1	198717267	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:96:59
chr1	198717268	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:69:59
chr1	198717269	.	A	.	.	PASS	END=198717270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:59
chr1	198717271	.	C	.	.	PASS	END=198717273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:72:59
chr1	198717274	.	A	.	.	PASS	END=198717282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:59
chr1	198717283	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:42:59
chr1	198717284	.	A	.	.	PASS	END=198717305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:59
chr1	198717306	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:60:59
chr1	198717307	.	A	.	.	PASS	END=198717329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:59
chr1	198717330	.	T	.	.	PASS	END=198717334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	198717335	.	A	.	.	PASS	END=198717379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	198718494	.	A	.	.	PASS	END=198718519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	198718520	.	C	.	.	PASS	END=198718546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	198718547	.	G	.	.	PASS	END=198718548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	198718549	.	C	.	.	PASS	END=198718634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	198718635	.	A	.	.	PASS	END=198718670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	198718671	.	T	.	.	PASS	END=198718681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:60
chr1	198718682	.	G	.	.	PASS	END=198718698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	198718699	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:54:60
chr1	198718700	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:28:60
chr1	198718701	.	C	.	.	PASS	END=198718729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	198719440	.	T	.	.	LowGQX	END=198719444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	198719445	.	G	.	.	PASS	END=198719447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	198719448	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	198719449	.	A	.	.	PASS	END=198719456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	198719457	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	198719458	.	A	.	.	PASS	END=198719465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	198719466	.	C	.	.	PASS	END=198719473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	198719474	.	T	.	.	PASS	END=198719477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	198719478	.	T	.	.	PASS	END=198719480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr1	198719481	.	T	.	.	PASS	END=198719490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	198719491	.	C	.	.	PASS	END=198719508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	198719509	.	T	.	.	PASS	END=198719524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	198719525	.	G	.	.	PASS	END=198719536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:69:60
chr1	198719537	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:60:60
chr1	198719538	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:33:60
chr1	198719539	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:81:60
chr1	198719570	.	C	.	.	PASS	END=198719588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	198719589	.	A	.	.	PASS	END=198719637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	198719638	.	A	.	.	PASS	END=198719662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	198719663	.	C	.	.	PASS	END=198719795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	198719796	.	T	.	.	PASS	END=198719806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	198721327	.	T	.	.	PASS	END=198721366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	198721367	.	C	.	.	PASS	END=198721386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	198721387	.	G	.	.	PASS	END=198721391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	198721392	.	G	.	.	PASS	END=198721425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	198721426	.	A	.	.	PASS	END=198721534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	198721535	.	T	.	.	PASS	END=198721542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	198721543	.	A	.	.	PASS	END=198721551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	198721672	.	A	.	.	PASS	END=198721730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	198721731	.	C	.	.	PASS	END=198721740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	198721741	.	G	.	.	PASS	END=198721797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	198721798	.	G	.	.	PASS	END=198721885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	198721886	.	T	.	.	PASS	END=198721891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	198721892	.	T	.	.	PASS	END=198721921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	198721922	.	T	.	.	PASS	END=198721952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	198723347	.	C	.	.	PASS	END=198723363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	198723364	.	T	.	.	PASS	END=198723400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	198723401	.	T	.	.	PASS	END=198723547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	198723548	.	C	.	.	PASS	END=198723584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	198724984	.	A	.	.	PASS	END=198725029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	198725030	.	A	.	.	PASS	END=198725064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	198725065	.	G	.	.	PASS	END=198725085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	198725086	.	A	.	.	PASS	END=198725219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:271:99:60
chr1	198725220	.	G	.	.	PASS	END=198725236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	198725237	.	C	.	.	PASS	END=198725321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	198725322	.	A	.	.	PASS	END=198725361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	198828002	.	A	.	.	LowGQX	END=198828111	GT	./.
chr1	198828173	.	T	.	.	LowGQX	END=198828203	GT	./.
chr1	198828204	.	A	.	.	LowGQX	END=198828282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	199996958	.	C	.	.	LowGQX	END=199997057	GT	./.
chr1	199998150	.	T	.	.	LowGQX	END=199998439	GT	./.
chr1	200007755	.	A	.	.	LowGQX	END=200007786	GT	./.
chr1	200007787	.	C	.	.	LowGQX	END=200007805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200007806	.	C	.	.	LowGQX	.	GT	./.
chr1	200007807	.	C	.	.	LowGQX	END=200007808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200007809	.	T	.	.	LowGQX	.	GT	./.
chr1	200007810	.	T	.	.	LowGQX	END=200007811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200007812	.	T	.	.	LowGQX	.	GT	./.
chr1	200007813	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200007814	.	C	.	.	LowGQX	.	GT	./.
chr1	200007815	.	T	.	.	LowGQX	END=200007824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200007825	.	T	.	.	LowGQX	END=200007828	GT	./.
chr1	200007829	.	A	.	.	LowGQX	END=200007830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200007831	.	C	.	.	LowGQX	.	GT	./.
chr1	200007832	.	G	.	.	LowGQX	END=200007835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200007836	.	A	.	.	LowGQX	.	GT	./.
chr1	200007837	.	A	.	.	LowGQX	END=200007840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200007841	.	G	.	.	LowGQX	.	GT	./.
chr1	200007842	.	C	.	.	LowGQX	END=200007846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200007847	.	C	.	.	LowGQX	END=200007848	GT	./.
chr1	200007849	.	G	.	.	LowGQX	END=200007851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200007852	.	T	.	.	LowGQX	.	GT	./.
chr1	200007853	.	G	.	.	LowGQX	END=200007854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200007855	.	T	.	.	LowGQX	.	GT	./.
chr1	200007856	.	T	.	.	LowGQX	END=200007871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200007872	.	G	.	.	LowGQX	.	GT	./.
chr1	200007873	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200007874	.	T	.	.	LowGQX	.	GT	./.
chr1	200007875	.	C	.	.	LowGQX	END=200007876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200007877	.	G	.	.	LowGQX	.	GT	./.
chr1	200007878	.	A	.	.	LowGQX	END=200007881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200007882	.	A	.	.	LowGQX	END=200007883	GT	./.
chr1	200007884	.	G	.	.	LowGQX	END=200007885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200007886	.	C	.	.	LowGQX	END=200007887	GT	./.
chr1	200007888	.	C	.	.	LowGQX	END=200007893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200007894	.	A	.	.	LowGQX	.	GT	./.
chr1	200007895	.	C	.	.	LowGQX	END=200007910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200007911	.	G	.	.	LowGQX	.	GT	./.
chr1	200007912	.	C	.	.	LowGQX	END=200007914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200008753	.	C	.	.	LowGQX	END=200008963	GT	./.
chr1	200012900	.	A	.	.	LowGQX	END=200013022	GT	./.
chr1	200014569	.	A	.	.	LowGQX	END=200014714	GT	./.
chr1	200017298	.	A	.	.	LowGQX	END=200017500	GT	./.
chr1	200017501	.	G	.	.	LowGQX	END=200017650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200017651	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	200017652	.	G	.	.	LowGQX	END=200017699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200017700	.	A	.	.	LowGQX	END=200017948	GT	./.
chr1	200026620	.	T	.	.	LowGQX	END=200026889	GT	./.
chr1	200080328	.	A	.	.	LowGQX	END=200080451	GT	./.
chr1	200089934	.	A	.	.	LowGQX	END=200090122	GT	./.
chr1	200143089	.	A	.	.	LowGQX	END=200143236	GT	./.
chr1	200143237	.	A	.	.	LowGQX	END=200143280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200143281	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	200143282	.	G	.	.	LowGQX	END=200143340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200182691	.	C	.	.	PASS	END=200182710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	200182711	.	C	.	.	PASS	END=200182720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:95:60
chr1	200182721	.	G	C	792.57	PASS	BaseQRankSum=1.941;DP=65;Dels=0.00;FS=1.205;HRun=0;HaplotypeScore=3.8381;MQ=60;MQ0=0;MQRankSum=-1.362;QD=12.19;ReadPosRankSum=1.415;SB=-218.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,30:65:99:823,0,943:60:99:0.462
chr1	200182722	.	G	.	.	PASS	END=200182724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	200182725	.	G	A	774.77	PASS	BaseQRankSum=2.408;DP=67;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7850;MQ=60;MQ0=0;MQRankSum=-0.270;QD=11.56;ReadPosRankSum=1.528;SB=-199.79	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:36,31:67:99:805,0,917:60:99:0.463
chr1	200182726	.	G	.	.	PASS	END=200182731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	200182732	.	A	G	785.97	PASS	BaseQRankSum=2.741;DP=70;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=9.5747;MQ=60;MQ0=0;MQRankSum=-1.824;QD=11.23;ReadPosRankSum=1.706;SB=-225.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:37,33:70:99:816,0,701:60:99:0.471
chr1	200182733	.	C	T	727.34	PASS	BaseQRankSum=2.211;DP=70;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=9.5747;MQ=60;MQ0=0;MQRankSum=0.242;QD=10.39;ReadPosRankSum=1.845;SB=-157.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,32:70:99:757,0,1089:60:99:0.457
chr1	200182734	.	G	.	.	PASS	END=200182746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	200182747	.	C	.	.	PASS	END=200182787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	200182788	.	C	.	.	PASS	END=200182833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	200182834	.	A	G	2125.36	PASS	BaseQRankSum=1.782;DP=151;Dels=0.00;FS=0.720;HRun=1;HaplotypeScore=20.2765;MQ=60;MQ0=0;MQRankSum=0.873;QD=14.08;ReadPosRankSum=-0.706;SB=-596.75	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:70,79:151:99:2155,0,1732:60:99:0.530
chr1	200182835	.	G	.	.	PASS	END=200182906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	200182907	.	C	.	.	PASS	END=200183066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	200183067	.	G	.	.	PASS	END=200183101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:283:99:60
chr1	200183102	.	C	.	.	PASS	END=200183219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:352:99:60
chr1	200183220	.	C	.	.	PASS	END=200183397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:275:99:60
chr1	200183398	.	C	A	4880.60	PASS	BaseQRankSum=3.304;DP=357;Dels=0.00;FS=1.338;HRun=1;HaplotypeScore=29.6705;MQ=60;MQ0=0;MQRankSum=-0.391;QD=13.67;ReadPosRankSum=0.170;SB=-2316.49	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:167,190:357:99:4881,0,4051:60:99:0.532
chr1	200183399	.	T	.	.	PASS	END=200183450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:304:99:60
chr1	200311793	.	G	.	.	LowGQX	END=200311892	GT	./.
chr1	200312373	.	T	.	.	LowGQX	END=200312538	GT	./.
chr1	200337792	.	C	.	.	LowGQX	END=200337903	GT	./.
chr1	200342196	.	A	.	.	LowGQX	END=200342285	GT	./.
chr1	200342286	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200342287	.	C	.	.	LowGQX	.	GT	./.
chr1	200342288	.	T	.	.	LowGQX	END=200342295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200376144	.	C	.	.	LowGQX	END=200377314	GT	./.
chr1	200377315	.	A	.	.	LowGQX	END=200377386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200377387	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	200377388	.	A	.	.	LowGQX	END=200377427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200377428	.	T	.	.	LowGQX	.	GT	./.
chr1	200377429	.	T	.	.	LowGQX	END=200377517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200377518	.	A	.	.	LowGQX	END=200377613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	200377614	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	200377615	.	T	.	.	LowGQX	END=200377670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200377671	.	A	.	.	LowGQX	END=200377725	GT	./.
chr1	200377726	.	C	.	.	LowGQX	END=200377763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200377764	.	G	.	.	LowGQX	.	GT	./.
chr1	200377765	.	T	.	.	LowGQX	END=200377876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200377877	.	A	.	.	LowGQX	END=200378384	GT	./.
chr1	200378385	.	C	.	.	LowGQX;LowMQ	END=200378395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:13
chr1	200378396	.	G	.	.	LowGQX;LowMQ	END=200378403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:11
chr1	200378404	.	G	.	.	LowGQX;LowMQ	END=200378417	GT	./.
chr1	200378418	.	T	.	.	LowGQX	END=200378610	GT	./.
chr1	200378611	.	G	.	.	LowGQX	END=200378638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200378639	.	C	.	.	LowGQX	.	GT	./.
chr1	200378640	.	C	.	.	LowGQX	END=200378658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200378659	.	G	.	.	LowGQX	.	GT	./.
chr1	200378660	.	G	.	.	LowGQX	END=200378665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200378666	.	A	.	.	LowGQX	.	GT	./.
chr1	200378667	.	C	.	.	LowGQX	END=200378716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200378717	.	C	.	.	LowGQX	.	GT	./.
chr1	200378718	.	C	.	.	LowGQX	END=200378742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	200378743	.	C	.	.	LowGQX	END=200378744	GT	./.
chr1	200378745	.	C	.	.	LowGQX	END=200378835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200522514	.	A	.	.	LowGQX	END=200522897	GT	./.
chr1	200523554	.	A	.	.	LowGQX	END=200523618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200523619	.	T	.	.	LowGQX	END=200523736	GT	./.
chr1	200524436	.	A	.	.	LowGQX	END=200524578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200524579	.	T	.	.	LowGQX	END=200524595	GT	./.
chr1	200528456	.	A	.	.	LowGQX	END=200528582	GT	./.
chr1	200529848	.	A	.	.	LowGQX	END=200529862	GT	./.
chr1	200529863	.	G	.	.	LowGQX	END=200530010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200534195	.	A	.	.	LowGQX	END=200534356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200534357	.	T	.	.	LowGQX	END=200534383	GT	./.
chr1	200534571	.	A	.	.	LowGQX	END=200534799	GT	./.
chr1	200539037	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200539038	.	C	.	.	LowGQX	.	GT	./.
chr1	200539039	.	C	.	.	LowGQX	END=200539040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200539041	.	G	.	.	LowGQX	.	GT	./.
chr1	200539042	.	A	.	.	LowGQX	END=200539043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200539044	.	G	.	.	LowGQX	.	GT	./.
chr1	200539045	.	A	.	.	LowGQX	END=200539050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200539051	.	A	.	.	LowGQX	END=200539052	GT	./.
chr1	200539053	.	G	.	.	LowGQX	END=200539062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200539063	.	T	.	.	LowGQX	.	GT	./.
chr1	200539064	.	C	.	.	LowGQX	END=200539072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200539073	.	A	.	.	LowGQX	END=200539074	GT	./.
chr1	200539075	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200539076	.	G	.	.	LowGQX	END=200539077	GT	./.
chr1	200539078	.	C	.	.	LowGQX	END=200539080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200539081	.	G	.	.	LowGQX	.	GT	./.
chr1	200539082	.	T	.	.	LowGQX	END=200539088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200539089	.	T	.	.	LowGQX	END=200539091	GT	./.
chr1	200539092	.	A	.	.	LowGQX	END=200539096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200539097	.	A	.	.	LowGQX	.	GT	./.
chr1	200539098	.	C	.	.	LowGQX	END=200539102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200539103	.	A	.	.	LowGQX	.	GT	./.
chr1	200539104	.	A	.	.	LowGQX	END=200539109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200539110	.	C	.	.	LowGQX	.	GT	./.
chr1	200539111	.	T	.	.	LowGQX	END=200539115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200539116	.	T	.	.	LowGQX	.	GT	./.
chr1	200539117	.	T	.	.	LowGQX	END=200539123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200539124	.	A	.	.	LowGQX	.	GT	./.
chr1	200539125	.	C	.	.	LowGQX	END=200539131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200539132	.	T	.	.	LowGQX	.	GT	./.
chr1	200539133	.	C	.	.	LowGQX	END=200539136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200544717	.	A	.	.	LowGQX	END=200544821	GT	./.
chr1	200549380	.	A	.	.	LowGQX	END=200549513	GT	./.
chr1	200550326	.	C	.	.	LowGQX	END=200550397	GT	./.
chr1	200550398	.	T	.	.	LowGQX	END=200550425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200555227	.	A	.	.	LowGQX	END=200555240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200555241	.	T	.	.	LowGQX	.	GT	./.
chr1	200555242	.	A	.	.	LowGQX	END=200555357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200558343	.	A	.	.	LowGQX	END=200558499	GT	./.
chr1	200559251	.	A	.	.	LowGQX	END=200559402	GT	./.
chr1	200561206	.	A	.	.	LowGQX	END=200561370	GT	./.
chr1	200562743	.	T	.	.	LowGQX	END=200562899	GT	./.
chr1	200567343	.	T	.	.	LowGQX	END=200567551	GT	./.
chr1	200569160	.	A	.	.	LowGQX	END=200569259	GT	./.
chr1	200569482	.	A	.	.	LowGQX	END=200569502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200569503	.	C	.	.	LowGQX	.	GT	./.
chr1	200569504	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200569505	.	C	.	.	LowGQX	.	GT	./.
chr1	200569506	.	T	.	.	LowGQX	END=200569508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200569509	.	C	.	.	LowGQX	.	GT	./.
chr1	200569510	.	C	.	.	LowGQX	END=200569515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200569516	.	A	.	.	LowGQX	.	GT	./.
chr1	200569517	.	T	.	.	LowGQX	END=200569535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200569536	.	A	.	.	LowGQX	.	GT	./.
chr1	200569537	.	T	.	.	LowGQX	END=200569557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200569558	.	C	.	.	LowGQX	.	GT	./.
chr1	200569559	.	C	.	.	LowGQX	END=200569562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200569563	.	A	.	.	LowGQX	.	GT	./.
chr1	200569564	.	T	.	.	LowGQX	END=200569566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200569567	.	T	.	.	LowGQX	.	GT	./.
chr1	200569568	.	T	.	.	LowGQX	END=200569573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200569574	.	T	.	.	LowGQX	.	GT	./.
chr1	200569575	.	C	.	.	LowGQX	END=200569580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200569581	.	T	.	.	LowGQX	END=200569582	GT	./.
chr1	200569583	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200569584	.	G	.	.	LowGQX	.	GT	./.
chr1	200569585	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200569586	.	C	.	.	LowGQX	.	GT	./.
chr1	200569587	.	T	.	.	LowGQX	END=200569591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200569592	.	C	.	.	LowGQX	.	GT	./.
chr1	200569593	.	T	.	.	LowGQX	END=200569594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200569595	.	T	.	.	LowGQX	.	GT	./.
chr1	200569596	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200569597	.	A	.	.	LowGQX	.	GT	./.
chr1	200569598	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200569599	.	C	.	.	LowGQX	.	GT	./.
chr1	200569600	.	A	.	.	LowGQX	END=200569613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200569614	.	C	.	.	LowGQX	END=200569633	GT	./.
chr1	200571022	.	A	.	.	LowGQX	END=200571132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200571133	.	A	.	.	LowGQX	END=200571198	GT	./.
chr1	200572352	.	G	.	.	LowGQX	END=200572471	GT	./.
chr1	200572965	.	A	.	.	LowGQX	END=200573085	GT	./.
chr1	200574409	.	A	.	.	LowGQX	END=200574464	GT	./.
chr1	200574465	.	A	.	.	LowGQX	END=200574469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200574470	.	T	.	.	LowGQX	.	GT	./.
chr1	200574471	.	A	.	.	LowGQX	END=200574520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200574900	.	T	.	.	LowGQX	END=200575057	GT	./.
chr1	200575851	.	C	.	.	LowGQX	END=200575950	GT	./.
chr1	200577956	.	A	.	.	LowGQX	END=200578058	GT	./.
chr1	200583440	.	A	.	.	LowGQX	END=200583539	GT	./.
chr1	200584481	.	A	.	.	LowGQX	END=200584486	GT	./.
chr1	200584487	.	A	.	.	LowGQX	END=200584504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200584505	.	T	.	.	LowGQX	.	GT	./.
chr1	200584506	.	C	.	.	LowGQX	END=200584543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200584544	.	A	.	.	LowGQX	.	GT	./.
chr1	200584545	.	G	.	.	LowGQX	END=200584637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200584638	.	A	.	.	LowGQX	END=200584739	GT	./.
chr1	200586738	.	A	.	.	LowGQX	END=200587853	GT	./.
chr1	200594027	.	A	.	.	LowGQX	END=200594206	GT	./.
chr1	200610239	.	C	.	.	LowGQX	END=200610384	GT	./.
chr1	200613380	.	A	.	.	LowGQX	END=200613538	GT	./.
chr1	200613539	.	C	.	.	LowGQX	END=200613582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200613583	.	T	A	7.08	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=3.54;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:36,3,0:60:3:1.000
chr1	200613584	.	G	.	.	LowGQX	END=200613647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	200617565	.	A	.	.	LowGQX	END=200617697	GT	./.
chr1	200618200	.	A	.	.	LowGQX	END=200618389	GT	./.
chr1	200619551	.	A	.	.	LowGQX	END=200619806	GT	./.
chr1	200628150	.	C	.	.	LowGQX	END=200628249	GT	./.
chr1	200633045	.	A	.	.	LowGQX	END=200633216	GT	./.
chr1	200635063	.	A	.	.	LowGQX	END=200635548	GT	./.
chr1	200635549	.	A	.	.	LowGQX	END=200635630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200635631	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	200635632	.	C	.	.	LowGQX	END=200635722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200635723	.	G	.	.	LowGQX	END=200635870	GT	./.
chr1	200708954	.	A	.	.	LowGQX	END=200709096	GT	./.
chr1	200729965	.	A	.	.	LowGQX	END=200730004	GT	./.
chr1	200730005	.	G	.	.	LowGQX	END=200730167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200730168	.	T	.	.	LowGQX	END=200730228	GT	./.
chr1	200776502	.	A	.	.	LowGQX	END=200776667	GT	./.
chr1	200784681	.	A	.	.	LowGQX	END=200784780	GT	./.
chr1	200797667	.	G	.	.	LowGQX	END=200797766	GT	./.
chr1	200801326	.	A	.	.	LowGQX	END=200801471	GT	./.
chr1	200801832	.	A	.	.	LowGQX	END=200801975	GT	./.
chr1	200811119	.	T	.	.	LowGQX	END=200811218	GT	./.
chr1	200813904	.	T	.	.	LowGQX	END=200814057	GT	./.
chr1	200816330	.	C	.	.	LowGQX	END=200816349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200816350	.	T	.	.	LowGQX	.	GT	./.
chr1	200816351	.	A	.	.	LowGQX	END=200816360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200816361	.	A	.	.	LowGQX	END=200816429	GT	./.
chr1	200816696	.	G	.	.	LowGQX	END=200816852	GT	./.
chr1	200817158	.	A	.	.	LowGQX	END=200818182	GT	./.
chr1	200818183	.	T	.	.	LowGQX	END=200818193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	200818194	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	200818195	.	C	.	.	LowGQX	END=200818328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	200818329	.	A	.	.	LowGQX	END=200818477	GT	./.
chr1	200818478	.	C	.	.	LowGQX	END=200818489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200818490	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	200818491	.	C	.	.	LowGQX	END=200818505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200818506	.	A	.	.	LowGQX	.	GT	./.
chr1	200818507	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200818508	.	A	.	.	LowGQX	.	GT	./.
chr1	200818509	.	C	.	.	LowGQX	END=200818530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200818531	.	A	.	.	LowGQX	.	GT	./.
chr1	200818532	.	G	.	.	LowGQX	END=200818533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200818534	.	A	.	.	LowGQX	.	GT	./.
chr1	200818535	.	T	.	.	LowGQX	END=200818542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200818543	.	A	.	.	LowGQX	.	GT	./.
chr1	200818544	.	T	.	.	LowGQX	END=200818558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200818559	.	A	.	.	LowGQX	.	GT	./.
chr1	200818560	.	A	.	.	LowGQX	END=200818581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200818582	.	A	.	.	LowGQX	END=200818584	GT	./.
chr1	200818585	.	A	.	.	LowGQX	END=200818616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200818617	.	T	.	.	LowGQX	.	GT	./.
chr1	200818618	.	G	.	.	LowGQX	END=200818627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200818628	.	A	.	.	LowGQX	END=200818668	GT	./.
chr1	200818669	.	C	.	.	LowGQX	END=200818693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200818694	.	T	.	.	LowGQX	.	GT	./.
chr1	200818695	.	T	.	.	LowGQX	END=200818704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200818705	.	T	.	.	LowGQX	.	GT	./.
chr1	200818706	.	A	.	.	LowGQX	END=200818732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200818733	.	G	.	.	LowGQX	.	GT	./.
chr1	200818734	.	C	.	.	LowGQX	END=200818819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200818820	.	C	.	.	LowGQX	END=200819125	GT	./.
chr1	200819126	.	G	.	.	LowGQX	END=200819181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200819182	.	A	.	.	LowGQX	.	GT	./.
chr1	200819183	.	C	.	.	LowGQX	END=200819347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200819348	.	G	.	.	LowGQX	END=200819364	GT	./.
chr1	200821667	.	A	.	.	LowGQX	END=200821807	GT	./.
chr1	200822401	.	A	.	.	LowGQX	END=200822561	GT	./.
chr1	200822562	.	A	.	.	LowGQX	END=200822625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200823932	.	C	.	.	LowGQX	END=200824031	GT	./.
chr1	200825136	.	A	.	.	LowGQX	END=200825255	GT	./.
chr1	200826392	.	A	.	.	LowGQX	END=200826567	GT	./.
chr1	200826880	.	A	.	.	LowGQX	END=200827189	GT	./.
chr1	200842164	.	C	.	.	LowGQX	END=200842166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200842167	.	T	.	.	LowGQX	.	GT	./.
chr1	200842168	.	G	.	.	LowGQX	END=200842201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200842202	.	T	.	.	LowGQX	.	GT	./.
chr1	200842203	.	C	.	.	LowGQX	END=200842225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200842226	.	T	.	.	LowGQX	.	GT	./.
chr1	200842227	.	T	.	.	LowGQX	END=200842279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200842280	.	T	.	.	LowGQX	END=200843253	GT	./.
chr1	200860555	.	C	.	.	LowGQX	END=200860570	GT	./.
chr1	200860571	.	G	.	.	LowGQX	END=200860727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200860728	.	T	.	.	LowGQX	.	GT	./.
chr1	200860729	.	C	.	.	LowGQX	END=200860735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200860736	.	A	.	.	LowGQX	.	GT	./.
chr1	200860737	.	G	.	.	LowGQX	END=200860743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200860744	.	T	.	.	LowGQX	.	GT	./.
chr1	200860745	.	G	.	.	LowGQX	END=200860787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200860788	.	G	.	.	LowGQX	END=200860894	GT	./.
chr1	200867433	.	A	.	.	LowGQX	END=200867585	GT	./.
chr1	200868599	.	A	.	.	LowGQX	END=200868613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200868614	.	G	.	.	LowGQX	END=200868615	GT	./.
chr1	200868616	.	T	.	.	LowGQX	END=200868626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200868627	.	A	.	.	LowGQX	.	GT	./.
chr1	200868628	.	A	.	.	LowGQX	END=200868647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200868648	.	C	.	.	LowGQX	.	GT	./.
chr1	200868649	.	A	.	.	LowGQX	END=200868663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	200868664	.	C	.	.	LowGQX	.	GT	./.
chr1	200868665	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	200868666	.	C	.	.	LowGQX	.	GT	./.
chr1	200868667	.	T	.	.	LowGQX	END=200868695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200868696	.	G	.	.	LowGQX	.	GT	./.
chr1	200868697	.	A	.	.	LowGQX	END=200868706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200868707	.	A	.	.	LowGQX	.	GT	./.
chr1	200868708	.	C	.	.	LowGQX	END=200868719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200868720	.	G	.	.	LowGQX	.	GT	./.
chr1	200868721	.	A	.	.	LowGQX	END=200868724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200868725	.	G	.	.	LowGQX	.	GT	./.
chr1	200868726	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200868727	.	T	.	.	LowGQX	.	GT	./.
chr1	200869230	.	A	.	.	LowGQX	END=200869239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	200869240	.	G	.	.	LowGQX	.	GT	./.
chr1	200869241	.	G	.	.	LowGQX	END=200869350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	200870063	.	A	.	.	LowGQX	END=200870076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200870077	.	A	.	.	LowGQX	END=200870289	GT	./.
chr1	200876939	.	T	.	.	LowGQX	END=200877038	GT	./.
chr1	200877856	.	A	.	.	LowGQX	END=200877944	GT	./.
chr1	200877945	.	C	.	.	LowGQX	END=200878064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200878065	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	200878066	.	C	.	.	LowGQX	END=200878070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	200878350	.	A	.	.	LowGQX	END=200878461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200878462	.	G	T	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	200878463	.	C	.	.	LowGQX	END=200878472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	200878473	.	G	T	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	200878474	.	C	.	.	LowGQX	END=200878527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	200880579	.	A	.	.	LowGQX	END=200880653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	200880654	.	A	.	.	LowGQX	END=200881267	GT	./.
chr1	200882662	.	C	.	.	LowGQX	END=200882740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200882741	.	T	.	.	LowGQX	.	GT	./.
chr1	200882742	.	C	.	.	LowGQX	END=200882760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:53
chr1	200882761	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr1	200942568	.	A	.	.	LowGQX	END=200942787	GT	./.
chr1	200943120	.	A	.	.	LowGQX	END=200943254	GT	./.
chr1	200943255	.	C	.	.	LowGQX	END=200943265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200943266	.	C	.	.	LowGQX	.	GT	./.
chr1	200943267	.	G	.	.	LowGQX	END=200943283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200943284	.	A	.	.	LowGQX	.	GT	./.
chr1	200943285	.	G	.	.	LowGQX	END=200943287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200943288	.	C	.	.	LowGQX	END=200943289	GT	./.
chr1	200943290	.	G	.	.	LowGQX	END=200943292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200943293	.	A	.	.	LowGQX	.	GT	./.
chr1	200943294	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200943295	.	G	.	.	LowGQX	.	GT	./.
chr1	200943296	.	T	.	.	LowGQX	END=200943297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200943298	.	A	.	.	LowGQX	.	GT	./.
chr1	200943299	.	T	.	.	LowGQX	END=200943300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200943301	.	C	.	.	LowGQX	.	GT	./.
chr1	200943302	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200943303	.	A	.	.	LowGQX	.	GT	./.
chr1	200943304	.	C	.	.	LowGQX	END=200943305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200943306	.	A	.	.	LowGQX	.	GT	./.
chr1	200943307	.	C	.	.	LowGQX	END=200943309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200943310	.	T	.	.	LowGQX	END=200943313	GT	./.
chr1	200943314	.	C	.	.	LowGQX	END=200943315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200943316	.	G	.	.	LowGQX	.	GT	./.
chr1	200943317	.	C	.	.	LowGQX	END=200943322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200943323	.	C	.	.	LowGQX	.	GT	./.
chr1	200943324	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200943840	.	A	.	.	LowGQX	END=200944043	GT	./.
chr1	200944625	.	A	.	.	LowGQX	END=200944633	GT	./.
chr1	200944634	.	A	.	.	LowGQX	END=200944709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200944710	.	C	.	.	LowGQX	.	GT	./.
chr1	200944711	.	G	.	.	LowGQX	END=200944713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200944714	.	A	.	.	LowGQX	.	GT	./.
chr1	200944715	.	C	.	.	LowGQX	END=200944799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200945902	.	A	.	.	LowGQX	END=200946023	GT	./.
chr1	200946338	.	A	.	.	LowGQX	END=200946506	GT	./.
chr1	200948661	.	A	.	.	LowGQX	END=200948845	GT	./.
chr1	200950046	.	A	.	.	LowGQX	END=200950226	GT	./.
chr1	200952153	.	G	.	.	LowGQX	END=200952252	GT	./.
chr1	200953985	.	A	.	.	LowGQX	END=200954144	GT	./.
chr1	200955960	.	A	.	.	LowGQX	END=200956004	GT	./.
chr1	200956005	.	C	.	.	LowGQX	END=200956059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200956122	.	A	.	.	LowGQX	END=200956186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200956187	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	200956188	.	G	.	.	LowGQX	END=200956206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200956207	.	G	.	.	LowGQX	END=200956331	GT	./.
chr1	200957403	.	C	.	.	LowGQX	END=200957502	GT	./.
chr1	200957597	.	C	.	.	LowGQX	END=200957696	GT	./.
chr1	200957892	.	A	.	.	LowGQX	END=200957988	GT	./.
chr1	200957989	.	G	.	.	LowGQX	END=200958061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200959068	.	A	.	.	LowGQX	END=200959072	GT	./.
chr1	200959073	.	G	.	.	LowGQX	END=200959173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	200959264	.	A	.	.	LowGQX	END=200959462	GT	./.
chr1	200959702	.	A	.	.	LowGQX	END=200959853	GT	./.
chr1	200960043	.	A	.	.	LowGQX	END=200960170	GT	./.
chr1	200960171	.	G	.	.	LowGQX	END=200960185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	200960186	.	T	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	200960187	.	C	.	.	LowGQX	END=200960212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	200960213	.	T	.	.	LowGQX	.	GT	./.
chr1	200960214	.	T	.	.	LowGQX	END=200960251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	200960252	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	200960253	.	T	.	.	LowGQX	END=200960257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	200960258	.	A	.	.	LowGQX	.	GT	./.
chr1	200960259	.	G	.	.	LowGQX	END=200960275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	200960276	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	200960277	.	C	.	.	LowGQX	END=200960279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	200960770	.	C	.	.	LowGQX	END=200960775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	200960776	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	200960777	.	G	.	.	LowGQX	END=200960869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	200961408	.	A	.	.	LowGQX	END=200961519	GT	./.
chr1	200965322	.	A	.	.	LowGQX	END=200965453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200965454	.	T	.	.	LowGQX	END=200965525	GT	./.
chr1	200967510	.	A	.	.	LowGQX	END=200967705	GT	./.
chr1	200968425	.	A	.	.	LowGQX	END=200968596	GT	./.
chr1	200969002	.	G	.	.	LowGQX	END=200969101	GT	./.
chr1	200969446	.	C	.	.	LowGQX	END=200969564	GT	./.
chr1	200969565	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969566	.	T	.	.	LowGQX	.	GT	./.
chr1	200969567	.	G	.	.	LowGQX	END=200969568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969569	.	T	.	.	LowGQX	.	GT	./.
chr1	200969570	.	T	.	.	LowGQX	END=200969572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969573	.	C	.	.	LowGQX	.	GT	./.
chr1	200969574	.	C	.	.	LowGQX	END=200969575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969576	.	T	.	.	LowGQX	.	GT	./.
chr1	200969577	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969578	.	C	.	.	LowGQX	.	GT	./.
chr1	200969579	.	G	.	.	LowGQX	END=200969580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969581	.	A	.	.	LowGQX	END=200969582	GT	./.
chr1	200969583	.	C	.	.	LowGQX	END=200969586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969587	.	T	.	.	LowGQX	.	GT	./.
chr1	200969588	.	C	.	.	LowGQX	END=200969589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969590	.	G	.	.	LowGQX	END=200969592	GT	./.
chr1	200969593	.	G	.	.	LowGQX	END=200969594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969595	.	A	.	.	LowGQX	END=200969596	GT	./.
chr1	200969597	.	C	.	.	LowGQX	END=200969601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969602	.	A	.	.	LowGQX	.	GT	./.
chr1	200969603	.	T	.	.	LowGQX	END=200969605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969606	.	A	.	.	LowGQX	.	GT	./.
chr1	200969607	.	G	.	.	LowGQX	END=200969608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969609	.	T	.	.	LowGQX	.	GT	./.
chr1	200969610	.	G	.	.	LowGQX	END=200969611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969612	.	C	.	.	LowGQX	END=200969613	GT	./.
chr1	200969614	.	G	.	.	LowGQX	END=200969617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969618	.	T	.	.	LowGQX	.	GT	./.
chr1	200969619	.	G	.	.	LowGQX	END=200969644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969645	.	A	.	.	LowGQX	END=200969646	GT	./.
chr1	200969647	.	G	.	.	LowGQX	END=200969648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969649	.	A	.	.	LowGQX	.	GT	./.
chr1	200969650	.	C	.	.	LowGQX	END=200969652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969653	.	A	.	.	LowGQX	END=200969654	GT	./.
chr1	200969655	.	G	.	.	LowGQX	END=200969656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969657	.	A	.	.	LowGQX	.	GT	./.
chr1	200969658	.	G	.	.	LowGQX	END=200969659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969660	.	A	.	.	LowGQX	.	GT	./.
chr1	200969661	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969662	.	G	.	.	LowGQX	.	GT	./.
chr1	200969663	.	G	.	.	LowGQX	END=200969665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969666	.	T	.	.	LowGQX	.	GT	./.
chr1	200969667	.	C	.	.	LowGQX	END=200969683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969684	.	A	.	.	LowGQX	.	GT	./.
chr1	200969685	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969686	.	A	.	.	LowGQX	END=200969690	GT	./.
chr1	200969691	.	G	.	.	LowGQX	END=200969709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969710	.	A	.	.	LowGQX	END=200969711	GT	./.
chr1	200969712	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969713	.	G	.	.	LowGQX	.	GT	./.
chr1	200969714	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200969715	.	T	.	.	LowGQX	END=200969805	GT	./.
chr1	200969827	.	C	.	.	LowGQX	END=200969926	GT	./.
chr1	200971287	.	A	.	.	LowGQX	END=200971480	GT	./.
chr1	200972669	.	C	.	.	LowGQX	.	GT	./.
chr1	200972670	.	T	.	.	LowGQX	END=200972682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200972683	.	A	.	.	LowGQX	.	GT	./.
chr1	200972684	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200972685	.	T	.	.	LowGQX	END=200972911	GT	./.
chr1	200973466	.	A	.	.	LowGQX	END=200973545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200973546	.	T	.	.	LowGQX	END=200973585	GT	./.
chr1	200973669	.	C	.	.	LowGQX	END=200974063	GT	./.
chr1	200974434	.	A	.	.	LowGQX	END=200974572	GT	./.
chr1	200974671	.	A	.	.	LowGQX	END=200974796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	200974797	.	A	.	.	LowGQX	END=200974824	GT	./.
chr1	200977895	.	A	.	.	LowGQX	END=200978081	GT	./.
chr1	200978392	.	A	.	.	LowGQX	END=200978443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200978444	.	T	.	.	LowGQX	.	GT	./.
chr1	200978445	.	G	.	.	LowGQX	END=200978485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200978486	.	T	.	.	LowGQX	.	GT	./.
chr1	200978487	.	G	.	.	LowGQX	END=200978517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	200978518	.	G	.	.	LowGQX	END=200978618	GT	./.
chr1	200992382	.	A	.	.	LowGQX	END=200992541	GT	./.
chr1	201008908	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	201008909	.	A	.	.	PASS	END=201008917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	201008918	.	G	.	.	PASS	END=201008922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	201008923	.	T	.	.	PASS	END=201008928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	201008929	.	C	.	.	PASS	END=201008939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:84:60
chr1	201008940	.	T	.	.	PASS	END=201008956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	201008957	.	C	.	.	PASS	END=201008982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr1	201008983	.	C	.	.	PASS	END=201009012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	201009013	.	G	.	.	PASS	END=201009045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	201009046	.	G	.	.	PASS	END=201009086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	201009087	.	G	.	.	PASS	END=201009168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	201009169	.	T	.	.	PASS	END=201009210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	201009211	.	C	.	.	PASS	END=201009230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	201009231	.	T	.	.	PASS	END=201009250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	201009251	.	A	.	.	PASS	END=201009261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	201009308	.	A	.	.	PASS	END=201009334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	201009335	.	G	.	.	PASS	END=201009362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	201009363	.	T	.	.	PASS	END=201009410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	201009411	.	C	.	.	PASS	END=201009485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	201009486	.	G	.	.	PASS	END=201009524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	201009525	.	A	.	.	PASS	END=201009553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	201009699	.	C	.	.	PASS	END=201009733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	201009734	.	C	.	.	PASS	END=201009792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	201009793	.	T	.	.	PASS	END=201009864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	201009865	.	T	.	.	PASS	END=201009892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	201010581	.	G	.	.	PASS	END=201010584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	201010585	.	C	.	.	PASS	END=201010597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	201010598	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:57:60
chr1	201010599	.	C	.	.	PASS	END=201010619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	201010620	.	G	.	.	PASS	END=201010629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	201010630	.	A	.	.	PASS	END=201010658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	201010659	.	C	.	.	PASS	END=201010686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	201010687	.	C	.	.	PASS	END=201010768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	201012358	.	C	.	.	PASS	END=201012373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	201012374	.	C	.	.	PASS	END=201012385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	201012386	.	G	.	.	PASS	END=201012388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	201012389	.	A	.	.	PASS	END=201012401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	201012402	.	C	.	.	PASS	END=201012432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	201012433	.	T	.	.	PASS	END=201012453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	201012454	.	A	.	.	PASS	END=201012485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	201012486	.	A	.	.	PASS	END=201012555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	201012556	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:76:60
chr1	201012557	.	C	.	.	PASS	END=201012604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:60
chr1	201012605	.	G	.	.	PASS	END=201012609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	201012610	.	T	.	.	PASS	END=201012621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:60
chr1	201012622	.	A	.	.	PASS	END=201012627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	201012628	.	T	.	.	PASS	END=201012657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	201012658	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:31:60
chr1	201012659	.	T	.	.	PASS	END=201012666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	201012667	.	C	.	.	PASS	END=201012672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	201012673	.	G	.	.	PASS	END=201012675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	201012676	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	201012677	.	A	.	.	PASS	END=201012681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	201012682	.	T	.	.	LowGQX	END=201012683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	201012684	.	A	.	.	LowGQX	END=201012687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	201012688	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	201012689	.	G	.	.	LowGQX	END=201012691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	201012692	.	T	.	45.03	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:15.04:60:15
chr1	201012693	.	G	.	.	LowGQX	END=201012695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	201012696	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	201012697	.	G	.	.	LowGQX	END=201012698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	201012699	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	201012700	.	G	.	.	LowGQX	END=201012702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	201012703	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	201012704	.	G	.	.	LowGQX	END=201012708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	201012709	.	T	.	16.44	LowGQX	DP=11;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:11:0.18:60:0
chr1	201012710	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:45:60
chr1	201013405	.	C	.	.	PASS	END=201013426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	201013427	.	C	.	.	PASS	END=201013534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	201013535	.	G	.	.	PASS	END=201013569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	201013570	.	G	.	.	PASS	END=201013586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:84:60
chr1	201013587	.	G	.	.	PASS	END=201013617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	201013618	.	A	.	.	PASS	END=201013635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	201016192	.	A	.	.	PASS	END=201016197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	201016198	.	G	.	.	PASS	END=201016211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	201016212	.	G	.	.	PASS	END=201016219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	201016220	.	G	.	.	PASS	END=201016240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	201016241	.	A	.	.	PASS	END=201016276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	201016277	.	C	.	.	PASS	END=201016367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	201016368	.	C	.	.	PASS	END=201016393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	201016394	.	C	.	.	PASS	END=201016418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	201016602	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:43:60
chr1	201016603	.	T	.	.	PASS	END=201016620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	201016621	.	T	.	.	PASS	END=201016658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:87:60
chr1	201016659	.	T	.	.	PASS	END=201016741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	201016742	.	T	.	.	PASS	END=201016753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	201016754	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:60:60
chr1	201016755	.	C	.	.	PASS	END=201016793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	201016794	.	A	.	.	PASS	END=201016805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	201017659	.	G	.	.	PASS	END=201017752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	201017753	.	T	.	.	PASS	END=201017786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	201017787	.	A	.	.	PASS	END=201017823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	201017824	.	G	.	.	PASS	END=201017850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	201017851	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:51:60
chr1	201017852	.	C	.	.	PASS	END=201017853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	201017854	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:56:60
chr1	201017855	.	G	.	.	PASS	END=201017860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	201017861	.	G	.	.	PASS	END=201017863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	201018080	.	C	.	.	PASS	END=201018095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	201018096	.	C	.	.	PASS	END=201018113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	201018114	.	C	.	.	PASS	END=201018154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	201018155	.	G	.	.	PASS	END=201018246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	201018247	.	C	.	.	PASS	END=201018272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	201018273	.	T	.	.	PASS	END=201018278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	201019466	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	201019467	.	G	.	.	PASS	END=201019468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	201019469	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr1	201019470	.	G	.	.	PASS	END=201019472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	201019473	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	201019474	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:1:60
chr1	201019475	.	T	.	.	PASS	END=201019485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	201019486	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:6:60
chr1	201019487	.	C	.	.	PASS	END=201019493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	201019494	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:21:60
chr1	201019495	.	A	.	.	PASS	END=201019497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	201019498	.	G	.	.	PASS	END=201019513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	201019514	.	C	.	.	PASS	END=201019515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	201019516	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:60:60
chr1	201019517	.	T	.	.	PASS	END=201019527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	201019528	.	G	.	.	PASS	END=201019547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:88:60
chr1	201019548	.	C	.	.	PASS	END=201019582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	201019583	.	G	.	.	PASS	END=201019664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	201019665	.	G	.	.	PASS	END=201019683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	201019684	.	A	.	.	PASS	END=201019695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr1	201020061	.	C	.	.	PASS	END=201020074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	201020075	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:62:60
chr1	201020076	.	G	.	.	PASS	END=201020094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	201020095	.	G	.	.	PASS	END=201020104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	201020105	.	A	G	1581.47	PASS	DP=64;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.3630;MQ=60;MQ0=0;QD=24.71;SB=-923.05	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,64:64:99:1614,123,0:60:99:1.000
chr1	201020106	.	T	.	.	PASS	END=201020148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	201020149	.	T	.	.	PASS	END=201020210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:97:60
chr1	201020211	.	A	.	.	PASS	END=201020238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:97:60
chr1	201020239	.	A	.	.	PASS	END=201020250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	201020251	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:58:60
chr1	201020252	.	A	.	.	PASS	END=201020291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	201020292	.	C	.	.	PASS	END=201020302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	201020303	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:39:60
chr1	201020304	.	T	.	.	PASS	END=201020322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	201021634	.	A	.	.	PASS	END=201021652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:99:60
chr1	201021653	.	G	.	.	PASS	END=201021669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	201021670	.	G	.	.	PASS	END=201021677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	201021678	.	C	.	.	PASS	END=201021713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	201021714	.	G	.	.	PASS	END=201021776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	201021777	.	C	.	.	PASS	END=201021805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	201021806	.	A	.	.	PASS	END=201021825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	201021826	.	C	.	.	PASS	END=201021827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	201022286	.	C	.	.	PASS	END=201022307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	201022308	.	G	.	.	PASS	END=201022421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	201022422	.	G	.	.	PASS	END=201022451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	201022452	.	G	.	.	PASS	END=201022453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	201022536	.	G	.	.	PASS	END=201022577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	201022578	.	C	.	.	PASS	END=201022655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	201022656	.	C	.	.	PASS	END=201022681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	201022682	.	A	.	.	PASS	END=201022700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	201022701	.	A	.	.	PASS	END=201022714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	201022715	.	C	.	.	PASS	END=201022730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	201022731	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:63:60
chr1	201022732	.	C	.	.	PASS	END=201022753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	201022754	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:31:60
chr1	201022755	.	A	.	.	PASS	END=201022756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	201022757	.	C	.	.	PASS	END=201022761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	201022762	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr1	201022763	.	G	.	.	PASS	END=201022766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	201023582	.	A	.	.	PASS	END=201023607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	201023608	.	G	.	.	PASS	END=201023701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	201023702	.	G	.	.	PASS	END=201023733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	201023734	.	G	.	.	PASS	END=201023740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	201027485	.	C	.	.	PASS	END=201027506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	201027507	.	A	.	.	PASS	END=201027552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	201027553	.	T	.	.	PASS	END=201027605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	201027606	.	T	.	.	PASS	END=201027670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	201028266	.	C	.	.	PASS	END=201028287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	201028288	.	T	.	.	PASS	END=201028310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	201028311	.	A	.	.	PASS	END=201028348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	201028349	.	T	.	.	PASS	END=201028417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	201028418	.	G	.	.	PASS	END=201028445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	201028446	.	A	.	.	PASS	END=201028460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	201028461	.	G	.	.	PASS	END=201028470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	201028471	.	T	.	.	PASS	END=201028478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	201029735	.	A	.	.	PASS	END=201029744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	201029745	.	T	.	.	PASS	END=201029760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	201029761	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:45:60
chr1	201029762	.	A	.	.	PASS	END=201029786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	201029787	.	T	.	.	PASS	END=201029799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	201029800	.	A	.	.	PASS	END=201029866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	201029867	.	C	.	.	PASS	END=201029911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:91:60
chr1	201029912	.	G	.	.	PASS	END=201029935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr1	201029936	.	A	.	.	PASS	END=201029940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	201029941	.	G	.	.	PASS	END=201029945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	201029946	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:51:60
chr1	201029947	.	G	.	.	PASS	END=201029958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	201029959	.	A	.	.	PASS	END=201029964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr1	201029965	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:20:60
chr1	201029966	.	A	.	.	PASS	END=201029979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	201029980	.	A	.	.	PASS	END=201029982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	201029983	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:1:60
chr1	201029984	.	C	.	.	PASS	END=201029995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	201030344	.	A	.	.	PASS	END=201030361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:95:60
chr1	201030362	.	C	.	.	PASS	END=201030384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:96:60
chr1	201030385	.	G	.	.	PASS	END=201030416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	201030417	.	T	.	.	PASS	END=201030445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	201030446	.	G	.	.	PASS	END=201030529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	201030530	.	C	.	.	PASS	END=201030551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	201030552	.	G	.	.	PASS	END=201030579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	201030580	.	T	.	.	PASS	END=201030593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	201030594	.	A	.	.	PASS	END=201030603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	201030604	.	T	.	.	PASS	END=201030605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	201030606	.	G	.	.	PASS	END=201030611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	201030612	.	G	.	.	PASS	END=201030615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	201030616	.	A	.	.	PASS	END=201030617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	201030618	.	A	.	.	PASS	END=201030619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	201030620	.	G	.	.	PASS	END=201030630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	201030631	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:33:60
chr1	201030632	.	G	.	.	PASS	END=201030635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	201030636	.	T	.	.	PASS	END=201030637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	201030638	.	A	.	.	PASS	END=201030639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	201030640	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr1	201030641	.	A	.	.	PASS	END=201030647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	201031021	.	G	.	.	PASS	END=201031036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	201031037	.	G	.	.	PASS	END=201031061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	201031062	.	C	.	.	PASS	END=201031082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	201031083	.	C	.	.	PASS	END=201031122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	201031123	.	A	.	.	PASS	END=201031187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	201031188	.	G	.	.	PASS	END=201031213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	201031214	.	A	.	.	PASS	END=201031229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	201031230	.	A	.	.	PASS	END=201031251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	201031252	.	A	.	.	PASS	END=201031267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:96:60
chr1	201031268	.	G	.	.	PASS	END=201031269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	201031539	.	A	.	.	PASS	END=201031544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:60
chr1	201031545	.	C	.	.	PASS	END=201031557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	201031558	.	G	.	.	PASS	END=201031560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	201031561	.	C	.	.	PASS	END=201031578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	201031579	.	G	.	.	PASS	END=201031668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	201031669	.	A	.	.	PASS	END=201031693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	201034915	.	C	.	.	PASS	END=201034916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:60:60
chr1	201034917	.	C	.	.	PASS	END=201034923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:60
chr1	201034924	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:66:60
chr1	201034925	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:36:60
chr1	201034926	.	G	.	.	PASS	END=201034947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	201034948	.	G	.	.	PASS	END=201034961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	201034962	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:75:60
chr1	201034963	.	C	.	.	PASS	END=201034978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	201034979	.	A	.	.	PASS	END=201034980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:75:60
chr1	201034981	.	G	.	.	PASS	END=201035010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	201035011	.	G	.	.	PASS	END=201035062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	201035063	.	T	.	.	PASS	END=201035124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:93:60
chr1	201035306	.	C	.	.	PASS	END=201035355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	201035356	.	C	.	.	PASS	END=201035420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	201035421	.	T	.	.	PASS	END=201035467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	201035468	.	G	.	.	PASS	END=201035495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	201035964	.	C	.	.	PASS	END=201035967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	201035968	.	G	.	.	PASS	END=201035978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	201035979	.	G	.	.	PASS	END=201035998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	201035999	.	C	.	.	PASS	END=201036026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:98:60
chr1	201036027	.	G	.	.	PASS	END=201036061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	201036062	.	C	.	.	PASS	END=201036118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	201036119	.	C	.	.	PASS	END=201036149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	201036150	.	G	.	.	PASS	END=201036172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	201038214	.	G	.	.	PASS	END=201038239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	201038240	.	G	.	.	PASS	END=201038275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	201038276	.	T	.	.	PASS	END=201038342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	201038343	.	C	.	.	PASS	END=201038375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	201038549	.	A	.	.	PASS	END=201038584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr1	201038585	.	G	.	.	PASS	END=201038633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:83:60
chr1	201038634	.	T	.	.	PASS	END=201038722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	201038723	.	A	.	.	PASS	END=201038751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	201038752	.	G	.	.	PASS	END=201038763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	201038764	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:72:60
chr1	201038765	.	G	.	.	PASS	END=201038768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	201038769	.	T	.	.	PASS	END=201038777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	201038778	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:45:60
chr1	201038779	.	T	.	.	PASS	END=201038780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	201039349	.	A	.	.	PASS	END=201039359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	201039360	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:58:60
chr1	201039361	.	C	.	.	PASS	END=201039382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	201039383	.	A	.	.	PASS	END=201039409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	201039410	.	G	.	.	PASS	END=201039489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	201039490	.	C	.	.	PASS	END=201039512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	201039513	.	C	.	.	PASS	END=201039540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	201039541	.	A	.	.	PASS	END=201039550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:96:60
chr1	201039551	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:45:60
chr1	201039552	.	A	.	.	PASS	END=201039560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	201039561	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:54:60
chr1	201039562	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:87:60
chr1	201039563	.	T	.	.	PASS	END=201039564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:54:60
chr1	201039565	.	T	.	.	PASS	END=201039583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	201041832	.	C	.	.	PASS	END=201041841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	201041842	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:63:60
chr1	201041843	.	C	.	.	PASS	END=201041865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	201041866	.	G	.	.	PASS	END=201041896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	201041897	.	G	.	.	PASS	END=201041923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	201041924	.	A	.	.	PASS	END=201041993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	201041994	.	T	.	.	PASS	END=201042003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	201042626	.	G	.	.	PASS	END=201042660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	201042661	.	C	.	.	PASS	END=201042689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	201042690	.	G	.	.	PASS	END=201042715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	201042716	.	C	.	.	PASS	END=201042784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	201042785	.	C	.	.	PASS	END=201042821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	201043583	.	C	.	.	PASS	END=201043600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	201043601	.	C	.	.	PASS	END=201043715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	201043716	.	C	.	.	PASS	END=201043751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	201043752	.	A	.	.	PASS	END=201043783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	201043784	.	G	.	.	PASS	END=201043799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	201044572	.	C	.	.	LowGQX	END=201044583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	201044584	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr1	201044585	.	C	.	.	LowGQX	END=201044592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	201044593	.	C	.	.	PASS	END=201044594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	201044595	.	T	.	.	PASS	END=201044598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	201044599	.	T	.	.	PASS	END=201044606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	201044607	.	G	.	.	PASS	END=201044613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	201044614	.	A	.	.	PASS	END=201044632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	201044633	.	G	.	.	PASS	END=201044680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	201044681	.	C	.	.	PASS	END=201044743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	201044744	.	C	.	.	PASS	END=201044747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	201044748	.	A	G	420.01	PASS	BaseQRankSum=-0.690;DP=40;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=0.825;QD=10.50;ReadPosRankSum=-1.068;SB=-215.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:20,20:40:99:450,0,500:60:99:0.500
chr1	201044749	.	T	.	.	PASS	END=201044760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	201044761	.	A	.	.	PASS	END=201044766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	201044767	.	C	.	.	PASS	END=201044771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	201044772	.	G	.	.	PASS	END=201044794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	201045997	.	G	.	.	PASS	END=201046006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	201046007	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:30:60
chr1	201046008	.	C	.	.	PASS	END=201046009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	201046010	.	A	.	.	PASS	END=201046015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:60:60
chr1	201046016	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:48:60
chr1	201046017	.	A	.	.	PASS	END=201046029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:69:60
chr1	201046030	.	C	.	.	PASS	END=201046084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	201046085	.	A	.	.	PASS	END=201046120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	201046121	.	T	.	.	PASS	END=201046219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:94:60
chr1	201046220	.	A	.	.	PASS	END=201046251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	201046252	.	A	.	.	PASS	END=201046264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	201046265	.	G	.	.	PASS	END=201046278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	201046279	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:60:60
chr1	201046280	.	G	.	.	PASS	END=201046288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	201046289	.	C	.	.	PASS	END=201046298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	201046299	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:39:60
chr1	201046300	.	A	.	.	PASS	END=201046301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	201046302	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:57:60
chr1	201046303	.	G	.	.	PASS	END=201046306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	201046956	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:81:60
chr1	201046957	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:36:60
chr1	201046958	.	C	.	.	PASS	END=201046968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	201046969	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:51:60
chr1	201046970	.	C	.	.	PASS	END=201046974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	201046975	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:53:60
chr1	201046976	.	C	.	.	PASS	END=201046992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	201046993	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:72:60
chr1	201046994	.	C	.	.	PASS	END=201047012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	201047013	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:42:60
chr1	201047014	.	T	.	.	PASS	END=201047039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	201047040	.	C	.	.	PASS	END=201047061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	201047062	.	G	A	976.82	PASS	BaseQRankSum=1.352;DP=88;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=18.9384;MQ=60;MQ0=0;MQRankSum=0.810;QD=11.10;ReadPosRankSum=-0.100;SB=-418.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:43,45:88:99:1007,0,971:60:99:0.511
chr1	201047063	.	G	.	.	PASS	END=201047074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	201047075	.	A	G	1207.89	PASS	BaseQRankSum=2.339;DP=96;Dels=0.00;FS=1.943;HRun=0;HaplotypeScore=21.8216;MQ=60;MQ0=0;MQRankSum=-0.312;QD=12.58;ReadPosRankSum=-0.196;SB=-542.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:43,50:96:99:1238,0,846:60:99:0.538
chr1	201047076	.	C	.	.	PASS	END=201047109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	201047110	.	T	.	.	PASS	END=201047196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	201047197	.	T	.	.	PASS	END=201047215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	201047216	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:69:69:60
chr1	201047217	.	A	.	.	PASS	END=201047241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	201047242	.	T	.	.	PASS	END=201047251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:96:60
chr1	201047252	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:75:60
chr1	201047253	.	C	.	.	PASS	END=201047258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	201047259	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:57:60
chr1	201047260	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:99:60
chr1	201047261	.	T	.	.	PASS	END=201047270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	201047271	.	T	.	.	PASS	END=201047272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	201047273	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:54:60
chr1	201047274	.	C	.	.	PASS	END=201047282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	201047283	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:36:60
chr1	201052239	.	A	.	.	PASS	END=201052244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	201052245	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:33:60
chr1	201052246	.	A	.	.	PASS	END=201052260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	201052261	.	C	.	.	PASS	END=201052265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	201052266	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:60:60
chr1	201052267	.	G	.	.	PASS	END=201052270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	201052271	.	T	.	.	PASS	END=201052272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	201052273	.	A	.	.	PASS	END=201052276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	201052277	.	C	.	.	PASS	END=201052284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	201052285	.	C	.	.	PASS	END=201052287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	201052288	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:75:60
chr1	201052289	.	C	.	.	PASS	END=201052302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	201052303	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:73:60
chr1	201052304	.	A	.	.	PASS	END=201052324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	201052325	.	T	.	.	PASS	END=201052343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	201052344	.	G	.	.	PASS	END=201052381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	201052382	.	A	G	1324.79	PASS	BaseQRankSum=0.116;DP=118;Dels=0.00;FS=3.433;HRun=1;HaplotypeScore=9.5747;MQ=60;MQ0=0;MQRankSum=-1.515;QD=11.23;ReadPosRankSum=1.548;SB=-815.46	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:58,60:118:99:1355,0,1463:60:99:0.508
chr1	201052383	.	A	.	.	PASS	END=201052451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	201052452	.	T	.	.	PASS	END=201052480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	201052481	.	T	.	.	PASS	END=201052489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	201052490	.	G	A	726.93	PASS	BaseQRankSum=1.745;DP=55;Dels=0.00;FS=2.722;HRun=0;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=-0.396;QD=13.22;ReadPosRankSum=-0.497;SB=-182.82	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,29:55:99:757,0,639:60:99:0.527
chr1	201052491	.	T	.	.	PASS	END=201052495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	201052496	.	C	.	.	PASS	END=201052501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	201054027	.	T	.	.	PASS	END=201054048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	201054049	.	G	.	.	PASS	END=201054063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	201054064	.	G	.	.	PASS	END=201054089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	201054090	.	A	.	.	PASS	END=201054179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	201054180	.	G	.	.	PASS	END=201054196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	201054197	.	G	T	917.27	PASS	BaseQRankSum=-1.351;DP=120;Dels=0.00;FS=5.574;HRun=0;HaplotypeScore=8.5223;MQ=60;MQ0=0;MQRankSum=2.221;QD=7.64;ReadPosRankSum=0.619;SB=-460.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:71,49:120:99:947,0,1714:60:99:0.408
chr1	201054198	.	C	.	.	PASS	END=201054208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	201054209	.	T	.	.	PASS	END=201054210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	201054513	.	G	.	.	PASS	END=201054529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	201054530	.	G	.	.	PASS	END=201054575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:93:60
chr1	201054576	.	C	.	.	PASS	END=201054602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	201054603	.	T	.	.	PASS	END=201054666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	201054667	.	G	.	.	PASS	END=201054691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	201054692	.	C	.	.	PASS	END=201054733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	201054734	.	A	.	.	PASS	END=201054748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	201054749	.	G	.	.	PASS	END=201054760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:59
chr1	201056903	.	T	.	.	PASS	END=201056904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:63:58
chr1	201056905	.	C	.	.	PASS	END=201056907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:58
chr1	201056908	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:63:58
chr1	201056909	.	C	.	.	PASS	END=201056913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:58
chr1	201056914	.	T	.	.	PASS	END=201056915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:72:58
chr1	201056916	.	T	.	99.20	PASS	DP=43;MQ=58;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:33:43:69.21:58:69
chr1	201056917	.	T	.	.	PASS	END=201056919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:75:58
chr1	201056920	.	T	.	.	PASS	END=201056927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:58
chr1	201056928	.	C	.	.	PASS	END=201056958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:59
chr1	201056959	.	C	.	.	PASS	END=201056983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:59
chr1	201056984	.	A	.	.	PASS	END=201057075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	201057076	.	T	.	.	PASS	END=201057107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	201057108	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:67:99:60
chr1	201058335	.	C	.	.	PASS	END=201058358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	201058359	.	G	.	.	PASS	END=201058372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	201058373	.	G	.	.	PASS	END=201058389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:81:60
chr1	201058390	.	T	.	.	PASS	END=201058410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	201058411	.	T	.	.	PASS	END=201058426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	201058427	.	G	.	.	PASS	END=201058530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	201058531	.	C	.	.	PASS	END=201058558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	201058559	.	A	.	.	PASS	END=201058574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	201058575	.	C	.	.	PASS	END=201058587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	201058588	.	A	.	.	PASS	END=201058632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	201058633	.	G	.	.	PASS	END=201058634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr1	201058635	.	T	.	.	PASS	END=201058636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	201058637	.	G	.	.	PASS	END=201058642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	201060717	.	C	.	.	PASS	END=201060723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	201060724	.	A	.	.	PASS	END=201060759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:95:60
chr1	201060760	.	G	.	.	PASS	END=201060802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	201060803	.	C	.	.	PASS	END=201060864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	201060865	.	G	A	1030.45	PASS	BaseQRankSum=2.660;DP=85;Dels=0.00;FS=0.861;HRun=1;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=1.077;QD=12.12;ReadPosRankSum=-1.631;SB=-519.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,41:85:99:1060,0,900:60:99:0.482
chr1	201060866	.	A	.	.	PASS	END=201060876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	201060877	.	G	.	.	PASS	END=201060888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	201060889	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:62:7:60
chr1	201060890	.	T	.	.	PASS	END=201060909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	201060910	.	C	.	.	PASS	END=201060912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	201060913	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:54:60
chr1	201060914	.	T	.	.	PASS	END=201060923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	201060924	.	C	.	.	PASS	END=201060953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	201060954	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:57:60
chr1	201060955	.	C	.	.	PASS	END=201060967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	201060968	.	T	.	.	PASS	END=201060971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	201061049	.	G	.	.	PASS	END=201061068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	201061069	.	G	.	.	PASS	END=201061079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	201061080	.	G	.	.	PASS	END=201061113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	201061114	.	A	.	.	PASS	END=201061143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	201061144	.	G	.	.	PASS	END=201061229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	201061230	.	C	.	.	PASS	END=201061264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	201061265	.	A	.	.	PASS	END=201061283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:93:60
chr1	201061284	.	A	.	.	PASS	END=201061293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	201062959	.	A	.	.	PASS	END=201062963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	201062964	.	C	.	.	PASS	END=201062979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	201062980	.	A	.	.	PASS	END=201062981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:75:60
chr1	201062982	.	C	.	.	PASS	END=201062994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	201062995	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:66:60
chr1	201062996	.	C	.	.	PASS	END=201063029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:81:60
chr1	201063030	.	G	.	.	PASS	END=201063050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	201063051	.	G	.	.	PASS	END=201063146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	201063147	.	C	.	.	PASS	END=201063184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	201063185	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:73:69:60
chr1	201063186	.	C	.	.	PASS	END=201063196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	201063197	.	C	.	.	PASS	END=201063200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	201079241	.	A	.	.	PASS	END=201079267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	201079268	.	G	.	.	PASS	END=201079302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	201079303	.	T	.	.	PASS	END=201079343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	201079344	.	G	C	1468.19	PASS	BaseQRankSum=1.311;DP=121;Dels=0.00;FS=3.519;HRun=2;HaplotypeScore=14.2038;MQ=60;MQ0=0;MQRankSum=1.135;QD=12.13;ReadPosRankSum=1.685;SB=-826.03	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:57,64:121:99:1498,0,1172:60:99:0.529
chr1	201079345	.	C	.	.	PASS	END=201079386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	201079387	.	T	.	.	PASS	END=201079415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	201079416	.	A	.	.	PASS	END=201079429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	201079430	.	A	.	.	PASS	END=201079448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	201081265	.	C	.	.	PASS	END=201081266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:45:59
chr1	201081267	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:69:59
chr1	201081268	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:33:59
chr1	201081269	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:48:59
chr1	201081270	.	C	.	.	PASS	END=201081271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:59
chr1	201081272	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:33:59
chr1	201081273	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:66:59
chr1	201081274	.	A	.	.	PASS	END=201081275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:42:59
chr1	201081276	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:63:59
chr1	201081277	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:15:59
chr1	201081278	.	C	.	.	PASS	END=201081280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:59
chr1	201081281	.	A	.	18.01	LowGQX	DP=30;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:23:30:0.26:59:0
chr1	201081282	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:75:59
chr1	201081283	.	A	C	10.98	LowGQX;LowQD;SB	BaseQRankSum=-1.057;DP=33;Dels=0.03;FS=3.010;HRun=9;HaplotypeScore=23.8265;MQ=59;MQ0=0;MQRankSum=-1.662;QD=0.33;ReadPosRankSum=-0.566;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:17,15:32:40.61:41,0,222:59:11:0.469
chr1	201081284	.	C	.	.	PASS	END=201081285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:59
chr1	201081286	.	C	.	.	PASS	END=201081292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:59
chr1	201081293	.	A	C	123.83	SB	BaseQRankSum=-1.250;DP=32;Dels=0.03;FS=11.553;HRun=9;HaplotypeScore=12.4112;MQ=59;MQ0=0;MQRankSum=-0.496;QD=3.87;ReadPosRankSum=-0.973;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:14,17:31:99:154,0,190:59:99:0.548
chr1	201081294	.	C	.	.	PASS	END=201081295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:59
chr1	201081296	.	G	.	.	PASS	END=201081300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	201081301	.	G	.	.	PASS	END=201081302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	201081303	.	C	.	.	PASS	END=201081305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	201081306	.	T	.	75.12	PASS	DP=33;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:26:33:45.13:59:45
chr1	201081307	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:84:59
chr1	201081308	.	A	.	.	PASS	END=201081310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:59
chr1	201081311	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:93:60
chr1	201081312	.	A	.	.	PASS	END=201081315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:59
chr1	201081316	.	T	.	.	PASS	END=201081327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	201081328	.	A	.	.	PASS	END=201081356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	201081357	.	C	.	.	PASS	END=201081378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	201081379	.	G	.	.	PASS	END=201081470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	201081471	.	T	.	.	PASS	END=201081506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	201081507	.	C	.	.	PASS	END=201081518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	201104789	.	A	.	.	PASS	END=201104850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	201104851	.	C	.	.	PASS	END=201104886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	201104887	.	T	.	.	PASS	END=201104933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	201104934	.	A	.	.	PASS	END=201104945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	201112946	.	A	.	.	PASS	END=201112978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	201112979	.	G	.	.	PASS	END=201112980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	201112981	.	A	G	3511.79	PASS	DP=124;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=9.4692;MQ=60;MQ0=0;QD=28.32;SB=-1816.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,124:124:99:3512,265,0:60:99:1.000
chr1	201112982	.	T	.	.	PASS	END=201113059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	201113060	.	A	.	.	PASS	END=201113081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	201115742	.	C	.	.	PASS	END=201115771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr1	201115772	.	T	.	.	PASS	END=201115791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	201115792	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:72:60
chr1	201115793	.	T	.	.	PASS	END=201115801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	201115802	.	A	.	.	PASS	END=201115821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	201115822	.	A	G	800.29	PASS	BaseQRankSum=0.439;DP=74;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-1.383;QD=10.81;ReadPosRankSum=2.055;SB=-402.80	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:40,34:74:99:830,0,906:60:99:0.459
chr1	201115823	.	A	.	.	PASS	END=201115843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	201115844	.	G	.	.	PASS	END=201115976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	201115977	.	C	.	.	PASS	END=201115997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	201120885	.	T	.	.	PASS	END=201120912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	201120913	.	T	.	.	PASS	END=201120984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	201122871	.	A	.	.	PASS	END=201122889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	201122890	.	G	.	.	PASS	END=201122914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	201122915	.	G	.	.	PASS	END=201122922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	201122923	.	C	.	.	PASS	END=201122946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	201122947	.	T	G	2368.33	PASS	BaseQRankSum=1.590;DP=187;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=18.1371;MQ=60;MQ0=0;MQRankSum=1.598;QD=12.66;ReadPosRankSum=1.267;SB=-265.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:103,84:187:99:2398,0,3013:60:99:0.449
chr1	201122948	.	G	.	.	PASS	END=201122998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	201122999	.	G	.	.	PASS	END=201123053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr1	201162375	.	G	.	.	LowGQX	END=201162474	GT	./.
chr1	201163281	.	G	.	.	LowGQX	END=201163381	GT	./.
chr1	201163382	.	C	.	.	LowGQX	END=201163401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201164966	.	G	.	.	LowGQX	END=201165039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201165040	.	T	.	.	LowGQX	.	GT	./.
chr1	201165041	.	G	.	.	LowGQX	END=201165044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201165045	.	T	.	.	LowGQX	END=201165106	GT	./.
chr1	201166345	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201166346	.	A	.	.	LowGQX	.	GT	./.
chr1	201166347	.	T	.	.	LowGQX	END=201166350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201166351	.	C	.	.	LowGQX	.	GT	./.
chr1	201166352	.	A	.	.	LowGQX	END=201166356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201166357	.	G	.	.	LowGQX	END=201166359	GT	./.
chr1	201166360	.	A	.	.	LowGQX	END=201166381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201166382	.	C	.	.	LowGQX	.	GT	./.
chr1	201166383	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	201166384	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	201166385	.	T	.	.	LowGQX	END=201166388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201166389	.	C	.	.	LowGQX	END=201166390	GT	./.
chr1	201166391	.	G	.	.	LowGQX	END=201166392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201166393	.	A	.	.	LowGQX	END=201166445	GT	./.
chr1	201168434	.	T	.	.	LowGQX	END=201168533	GT	./.
chr1	201168710	.	G	.	.	LowGQX	END=201168809	GT	./.
chr1	201169364	.	G	.	.	LowGQX	END=201169539	GT	./.
chr1	201170846	.	G	.	.	LowGQX	END=201170872	GT	./.
chr1	201170873	.	A	.	.	LowGQX	END=201170919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201170920	.	T	.	.	LowGQX	.	GT	./.
chr1	201170921	.	G	.	.	LowGQX	END=201170931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201170932	.	A	.	.	LowGQX	.	GT	./.
chr1	201170933	.	T	.	.	LowGQX	END=201170950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201170951	.	C	.	.	LowGQX	.	GT	./.
chr1	201170952	.	C	.	.	LowGQX	END=201170960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201172865	.	G	.	.	LowGQX	END=201173034	GT	./.
chr1	201174209	.	G	.	.	LowGQX	END=201174482	GT	./.
chr1	201175201	.	C	.	.	LowGQX	END=201175240	GT	./.
chr1	201175241	.	G	.	.	LowGQX	END=201175255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201175256	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201175257	.	G	.	.	LowGQX	END=201175273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201175274	.	A	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	201175275	.	G	.	.	LowGQX	END=201175278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201175279	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201175280	.	C	.	.	LowGQX	END=201175289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201175290	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201175291	.	G	.	.	LowGQX	END=201175292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201175293	.	G	.	.	LowGQX	.	GT	./.
chr1	201175294	.	T	.	.	LowGQX	END=201175295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201175296	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201175297	.	G	.	.	LowGQX	END=201175303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201175304	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	201175305	.	C	.	.	LowGQX	END=201175343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	201175344	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	201175345	.	G	.	.	LowGQX	END=201175373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	201175374	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	201175375	.	T	.	.	LowGQX	END=201175390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	201175391	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	201175392	.	A	.	.	LowGQX	END=201175427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201175428	.	C	.	.	LowGQX	.	GT	./.
chr1	201175429	.	T	.	.	LowGQX	END=201175494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201175495	.	T	.	.	LowGQX	.	GT	./.
chr1	201175496	.	T	.	.	LowGQX	END=201175582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201175583	.	G	.	.	LowGQX	END=201175888	GT	./.
chr1	201175889	.	G	.	.	LowGQX	END=201176047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201176048	.	T	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	201176049	.	G	.	.	LowGQX	.	GT	./.
chr1	201176050	.	G	.	.	LowGQX	END=201176069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201176070	.	T	.	.	LowGQX	.	GT	./.
chr1	201176071	.	T	.	.	LowGQX	END=201176083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201176084	.	T	.	.	LowGQX	.	GT	./.
chr1	201176085	.	G	.	.	LowGQX	END=201176096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201176097	.	T	.	.	LowGQX	.	GT	./.
chr1	201176098	.	G	.	.	LowGQX	END=201176126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201176127	.	T	.	.	LowGQX	.	GT	./.
chr1	201176128	.	G	.	.	LowGQX	END=201176157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201176158	.	G	.	.	LowGQX	END=201178240	GT	./.
chr1	201178241	.	A	.	.	LowGQX	END=201178320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178321	.	A	.	.	LowGQX	.	GT	./.
chr1	201178322	.	T	.	.	LowGQX	END=201178324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178325	.	G	.	.	LowGQX	.	GT	./.
chr1	201178326	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178327	.	A	.	.	LowGQX	END=201178328	GT	./.
chr1	201178329	.	A	.	.	LowGQX	END=201178332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178333	.	A	.	.	LowGQX	.	GT	./.
chr1	201178334	.	G	.	.	LowGQX	END=201178336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178337	.	A	.	.	LowGQX	.	GT	./.
chr1	201178338	.	G	.	.	LowGQX	END=201178346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178347	.	T	.	.	LowGQX	.	GT	./.
chr1	201178348	.	A	.	.	LowGQX	END=201178351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178352	.	A	.	.	LowGQX	.	GT	./.
chr1	201178353	.	T	.	.	LowGQX	END=201178354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178355	.	G	.	.	LowGQX	END=201178356	GT	./.
chr1	201178357	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178358	.	T	.	.	LowGQX	.	GT	./.
chr1	201178359	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178360	.	A	.	.	LowGQX	.	GT	./.
chr1	201178361	.	G	.	.	LowGQX	END=201178362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178363	.	G	.	.	LowGQX	.	GT	./.
chr1	201178364	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178365	.	T	.	.	LowGQX	.	GT	./.
chr1	201178366	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178367	.	C	.	.	LowGQX	.	GT	./.
chr1	201178368	.	T	.	.	LowGQX	END=201178369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178370	.	G	.	.	LowGQX	END=201178373	GT	./.
chr1	201178374	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178375	.	A	.	.	LowGQX	END=201178377	GT	./.
chr1	201178378	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178379	.	G	.	.	LowGQX	END=201178380	GT	./.
chr1	201178381	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178382	.	C	.	.	LowGQX	END=201178393	GT	./.
chr1	201178394	.	C	.	.	LowGQX	END=201178402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178403	.	G	.	.	LowGQX	.	GT	./.
chr1	201178404	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178405	.	A	.	.	LowGQX	.	GT	./.
chr1	201178406	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178407	.	A	.	.	LowGQX	END=201178408	GT	./.
chr1	201178409	.	A	.	.	LowGQX	END=201178415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178416	.	A	.	.	LowGQX	.	GT	./.
chr1	201178417	.	G	.	.	LowGQX	END=201178469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178470	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201178471	.	G	.	.	LowGQX	END=201178478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178479	.	G	.	.	LowGQX	.	GT	./.
chr1	201178480	.	G	.	.	LowGQX	END=201178489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178490	.	T	.	.	LowGQX	END=201178744	GT	./.
chr1	201178745	.	G	.	.	LowGQX	END=201178746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178747	.	A	.	.	LowGQX	END=201178748	GT	./.
chr1	201178749	.	G	.	.	LowGQX	END=201178750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178751	.	G	.	.	LowGQX	.	GT	./.
chr1	201178752	.	T	.	.	LowGQX	END=201178760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178761	.	T	.	.	LowGQX	.	GT	./.
chr1	201178762	.	A	.	.	LowGQX	END=201178767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178768	.	A	.	.	LowGQX	.	GT	./.
chr1	201178769	.	G	.	.	LowGQX	END=201178777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178778	.	A	.	.	LowGQX	.	GT	./.
chr1	201178779	.	T	.	.	LowGQX	END=201178831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201178832	.	A	.	.	LowGQX	END=201179457	GT	./.
chr1	201179458	.	G	.	.	LowGQX;LowMQ	END=201179509	GT	./.
chr1	201179510	.	C	.	.	LowGQX	END=201179536	GT	./.
chr1	201179537	.	G	.	.	LowGQX;LowMQ	END=201179833	GT	./.
chr1	201179834	.	C	.	.	LowGQX	END=201179924	GT	./.
chr1	201179925	.	T	.	.	LowGQX	END=201179953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:51
chr1	201179954	.	A	.	33	LowGQX	DP=2;MQ=51;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:51:3
chr1	201179955	.	A	.	.	LowGQX	END=201179984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:51
chr1	201179985	.	G	.	33	LowGQX	DP=2;MQ=51;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:51:3
chr1	201179986	.	G	.	.	LowGQX	END=201179991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:42
chr1	201179992	.	G	.	.	LowGQX	.	GT	./.
chr1	201179993	.	G	.	.	LowGQX	END=201180036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:42
chr1	201180037	.	G	A	7.08	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=37;MQ0=0;QD=3.54;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:36,3,0:37:3:1.000
chr1	201180038	.	A	.	.	LowGQX	END=201180041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:37
chr1	201180042	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	201180043	.	A	.	.	LowGQX	END=201180291	GT	./.
chr1	201180292	.	G	.	.	LowGQX	END=201180343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:52
chr1	201180344	.	A	.	.	LowGQX	END=201180614	GT	./.
chr1	201180615	.	T	.	.	LowGQX	END=201180677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180678	.	G	.	.	LowGQX	.	GT	./.
chr1	201180679	.	G	.	.	LowGQX	END=201180684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180685	.	A	.	.	LowGQX	.	GT	./.
chr1	201180686	.	A	.	.	LowGQX	END=201180688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180689	.	G	.	.	LowGQX	.	GT	./.
chr1	201180690	.	A	.	.	LowGQX	END=201180701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180702	.	G	.	.	LowGQX	.	GT	./.
chr1	201180703	.	A	.	.	LowGQX	END=201180705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180706	.	A	.	.	LowGQX	.	GT	./.
chr1	201180707	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180708	.	G	.	.	LowGQX	END=201180709	GT	./.
chr1	201180710	.	C	.	.	LowGQX	END=201180712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180713	.	G	.	.	LowGQX	.	GT	./.
chr1	201180714	.	T	.	.	LowGQX	END=201180715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180716	.	T	.	.	LowGQX	.	GT	./.
chr1	201180717	.	C	.	.	LowGQX	END=201180720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180721	.	G	.	.	LowGQX	.	GT	./.
chr1	201180722	.	A	.	.	LowGQX	END=201180740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180741	.	G	.	.	LowGQX	END=201180742	GT	./.
chr1	201180743	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180744	.	A	.	.	LowGQX	.	GT	./.
chr1	201180745	.	A	.	.	LowGQX	END=201180746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180747	.	G	.	.	LowGQX	END=201180748	GT	./.
chr1	201180749	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180750	.	G	.	.	LowGQX	.	GT	./.
chr1	201180751	.	T	.	.	LowGQX	END=201180753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180754	.	A	.	.	LowGQX	END=201180755	GT	./.
chr1	201180756	.	G	.	.	LowGQX	END=201180761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180762	.	G	.	.	LowGQX	.	GT	./.
chr1	201180763	.	G	.	.	LowGQX	END=201180764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180765	.	A	.	.	LowGQX	END=201180787	GT	./.
chr1	201180788	.	C	.	.	LowGQX	END=201180801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180802	.	G	.	.	LowGQX	.	GT	./.
chr1	201180803	.	G	.	.	LowGQX	END=201180807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180808	.	G	.	.	LowGQX	.	GT	./.
chr1	201180809	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180810	.	C	.	.	LowGQX	.	GT	./.
chr1	201180811	.	A	.	.	LowGQX	END=201180812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180813	.	T	.	.	LowGQX	.	GT	./.
chr1	201180814	.	T	.	.	LowGQX	END=201180815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180816	.	C	.	.	LowGQX	END=201180818	GT	./.
chr1	201180819	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180820	.	G	.	.	LowGQX	.	GT	./.
chr1	201180821	.	A	.	.	LowGQX	END=201180823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180824	.	A	.	.	LowGQX	.	GT	./.
chr1	201180825	.	C	.	.	LowGQX	END=201180830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180831	.	T	.	.	LowGQX	.	GT	./.
chr1	201180832	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180833	.	G	.	.	LowGQX	.	GT	./.
chr1	201180834	.	T	.	.	LowGQX	END=201180853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180854	.	T	.	.	LowGQX	.	GT	./.
chr1	201180855	.	C	.	.	LowGQX	END=201180937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201180938	.	G	.	.	LowGQX	END=201181507	GT	./.
chr1	201181508	.	G	.	.	LowGQX	END=201181538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201181539	.	A	.	.	LowGQX	.	GT	./.
chr1	201181540	.	G	.	.	LowGQX	END=201181543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201181544	.	C	.	.	LowGQX	.	GT	./.
chr1	201181545	.	T	.	.	LowGQX	END=201181571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201181572	.	C	.	.	LowGQX	.	GT	./.
chr1	201181573	.	C	.	.	LowGQX	END=201181582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201181583	.	T	.	.	LowGQX	.	GT	./.
chr1	201181584	.	A	.	.	LowGQX	END=201181586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201181587	.	G	.	.	LowGQX	END=201181588	GT	./.
chr1	201181589	.	G	.	.	LowGQX	END=201181599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201181600	.	T	.	.	LowGQX	.	GT	./.
chr1	201181601	.	T	.	.	LowGQX	END=201181616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201181617	.	G	.	.	LowGQX	END=201181618	GT	./.
chr1	201181619	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201181620	.	A	.	.	LowGQX	.	GT	./.
chr1	201181621	.	G	.	.	LowGQX	END=201181623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201181624	.	G	.	.	LowGQX	END=201181625	GT	./.
chr1	201181626	.	A	.	.	LowGQX	END=201181636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201181637	.	G	.	.	LowGQX	.	GT	./.
chr1	201181638	.	G	.	.	LowGQX	END=201181653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201181654	.	C	.	.	LowGQX	END=201181655	GT	./.
chr1	201181656	.	A	.	.	LowGQX	END=201181658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201181659	.	G	.	.	LowGQX	END=201181749	GT	./.
chr1	201181750	.	G	.	.	LowGQX	END=201181751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201181752	.	T	.	.	LowGQX	END=201181753	GT	./.
chr1	201181754	.	G	.	.	LowGQX	END=201181755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201181756	.	G	.	.	LowGQX	END=201181757	GT	./.
chr1	201181758	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201181759	.	T	.	.	LowGQX	.	GT	./.
chr1	201181760	.	C	.	.	LowGQX	END=201181772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201181773	.	C	.	.	LowGQX	.	GT	./.
chr1	201181774	.	A	.	.	LowGQX	END=201181808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201181809	.	T	.	.	LowGQX	.	GT	./.
chr1	201181810	.	C	.	.	LowGQX	END=201181816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201181817	.	T	.	.	LowGQX	END=201181850	GT	./.
chr1	201181851	.	G	.	.	LowGQX	END=201181857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201181858	.	T	.	.	LowGQX	.	GT	./.
chr1	201181859	.	C	.	.	LowGQX	END=201181991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201181992	.	A	.	.	LowGQX	END=201182359	GT	./.
chr1	201182360	.	C	.	.	LowGQX	END=201182384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182385	.	C	.	.	LowGQX	.	GT	./.
chr1	201182386	.	C	.	.	LowGQX	END=201182399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182400	.	C	.	.	LowGQX	.	GT	./.
chr1	201182401	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182402	.	T	.	.	LowGQX	.	GT	./.
chr1	201182403	.	A	.	.	LowGQX	END=201182407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182408	.	A	.	.	LowGQX	.	GT	./.
chr1	201182409	.	G	.	.	LowGQX	END=201182411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182412	.	T	.	.	LowGQX	END=201182414	GT	./.
chr1	201182415	.	A	.	.	LowGQX	END=201182418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182419	.	C	.	.	LowGQX	.	GT	./.
chr1	201182420	.	A	.	.	LowGQX	END=201182429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182430	.	A	.	.	LowGQX	.	GT	./.
chr1	201182431	.	G	.	.	LowGQX	END=201182444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182445	.	A	.	.	LowGQX	.	GT	./.
chr1	201182446	.	G	.	.	LowGQX	END=201182455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182456	.	C	.	.	LowGQX	.	GT	./.
chr1	201182457	.	T	.	.	LowGQX	END=201182465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182466	.	C	.	.	LowGQX	END=201182467	GT	./.
chr1	201182468	.	G	.	.	LowGQX	END=201182469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182470	.	A	.	.	LowGQX	.	GT	./.
chr1	201182471	.	G	.	.	LowGQX	END=201182475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182476	.	T	.	.	LowGQX	.	GT	./.
chr1	201182477	.	C	.	.	LowGQX	END=201182490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182491	.	G	.	.	LowGQX	.	GT	./.
chr1	201182492	.	G	.	.	LowGQX	END=201182493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182494	.	G	.	.	LowGQX	.	GT	./.
chr1	201182495	.	C	.	.	LowGQX	END=201182496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182497	.	G	.	.	LowGQX	.	GT	./.
chr1	201182498	.	A	.	.	LowGQX	END=201182500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182501	.	T	.	.	LowGQX	.	GT	./.
chr1	201182502	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182503	.	G	.	.	LowGQX	.	GT	./.
chr1	201182504	.	G	.	.	LowGQX	END=201182510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182511	.	A	.	.	LowGQX	END=201182600	GT	./.
chr1	201182601	.	T	.	.	LowGQX	END=201182610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182611	.	G	.	.	LowGQX	.	GT	./.
chr1	201182612	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182613	.	G	.	.	LowGQX	.	GT	./.
chr1	201182614	.	C	.	.	LowGQX	END=201182642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182643	.	T	.	.	LowGQX	.	GT	./.
chr1	201182644	.	G	.	.	LowGQX	END=201182648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182649	.	A	.	.	LowGQX	.	GT	./.
chr1	201182650	.	G	.	.	LowGQX	END=201182665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182666	.	T	.	.	LowGQX	.	GT	./.
chr1	201182667	.	C	.	.	LowGQX	END=201182672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182673	.	A	.	.	LowGQX	.	GT	./.
chr1	201182674	.	G	.	.	LowGQX	END=201182678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182679	.	G	.	.	LowGQX	.	GT	./.
chr1	201182680	.	A	.	.	LowGQX	END=201182684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182685	.	T	.	.	LowGQX	.	GT	./.
chr1	201182686	.	G	.	.	LowGQX	END=201182717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182718	.	T	.	.	LowGQX	.	GT	./.
chr1	201182719	.	G	.	.	LowGQX	END=201182731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182732	.	T	.	.	LowGQX	.	GT	./.
chr1	201182733	.	C	.	.	LowGQX	END=201182741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201182742	.	T	.	.	LowGQX	.	GT	./.
chr1	201182743	.	G	.	.	LowGQX	END=201182751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201183303	.	A	.	.	LowGQX	END=201183431	GT	./.
chr1	201184139	.	A	.	.	LowGQX	END=201184284	GT	./.
chr1	201184665	.	A	.	.	LowGQX	END=201184712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201184713	.	A	.	.	LowGQX	.	GT	./.
chr1	201184714	.	C	.	.	LowGQX	END=201184785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201184786	.	T	.	.	LowGQX	.	GT	./.
chr1	201184787	.	G	.	.	LowGQX	END=201184789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201184790	.	G	.	.	LowGQX	END=201184791	GT	./.
chr1	201184792	.	A	.	.	LowGQX	END=201184802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201184803	.	T	.	.	LowGQX	.	GT	./.
chr1	201184804	.	G	.	.	LowGQX	END=201184805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201184806	.	G	.	.	LowGQX	.	GT	./.
chr1	201184807	.	G	.	.	LowGQX	END=201184810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201184811	.	T	.	.	LowGQX	.	GT	./.
chr1	201184812	.	G	.	.	LowGQX	END=201184818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201184819	.	A	.	.	LowGQX	.	GT	./.
chr1	201184820	.	G	.	.	LowGQX	END=201184835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201184836	.	G	.	.	LowGQX	.	GT	./.
chr1	201184837	.	G	.	.	LowGQX	END=201184872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201184873	.	C	.	.	LowGQX	.	GT	./.
chr1	201184874	.	C	.	.	LowGQX	END=201184908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201184909	.	G	.	.	LowGQX	.	GT	./.
chr1	201184910	.	T	.	.	LowGQX	END=201184938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201184939	.	C	.	.	LowGQX	.	GT	./.
chr1	201184940	.	A	.	.	LowGQX	END=201184941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201184942	.	G	.	.	LowGQX	.	GT	./.
chr1	201184943	.	C	.	.	LowGQX	END=201184956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201184957	.	C	.	.	LowGQX	END=201184959	GT	./.
chr1	201184960	.	G	.	.	LowGQX	END=201184968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201185053	.	G	.	.	LowGQX	END=201185055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201185056	.	C	.	.	LowGQX	.	GT	./.
chr1	201185057	.	T	.	.	LowGQX	END=201185071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201185072	.	C	.	.	LowGQX	.	GT	./.
chr1	201185073	.	C	.	.	LowGQX	END=201185074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201185075	.	C	.	.	LowGQX	.	GT	./.
chr1	201185076	.	A	.	.	LowGQX	END=201185080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201185081	.	C	.	.	LowGQX	.	GT	./.
chr1	201185082	.	A	.	.	LowGQX	END=201185084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201185085	.	C	.	.	LowGQX	.	GT	./.
chr1	201185086	.	T	.	.	LowGQX	END=201185104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201185105	.	C	.	.	LowGQX	.	GT	./.
chr1	201185106	.	C	.	.	LowGQX	END=201185121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201185122	.	A	.	.	LowGQX	.	GT	./.
chr1	201185123	.	C	.	.	LowGQX	END=201185139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201185140	.	G	.	.	LowGQX	.	GT	./.
chr1	201185141	.	T	.	.	LowGQX	END=201185152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201185580	.	A	.	.	LowGQX	END=201185683	GT	./.
chr1	201185684	.	T	.	.	LowGQX	END=201185687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201185688	.	G	.	.	LowGQX	END=201185689	GT	./.
chr1	201185690	.	G	.	.	LowGQX	END=201185698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201185699	.	T	.	.	LowGQX	.	GT	./.
chr1	201185700	.	G	.	.	LowGQX	END=201185704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201185705	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	201185706	.	A	.	.	LowGQX	END=201185719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201185720	.	G	.	.	LowGQX	.	GT	./.
chr1	201185721	.	G	.	.	LowGQX	END=201185833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201185834	.	G	.	.	LowGQX	END=201185883	GT	./.
chr1	201186413	.	A	.	.	LowGQX	END=201186548	GT	./.
chr1	201186549	.	A	.	.	LowGQX	END=201186573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201186574	.	A	.	.	LowGQX	.	GT	./.
chr1	201186575	.	C	.	.	LowGQX	END=201186590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201187656	.	A	.	.	LowGQX	END=201187788	GT	./.
chr1	201190570	.	A	.	.	LowGQX	END=201190692	GT	./.
chr1	201190693	.	G	.	.	LowGQX	END=201190731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201190732	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	201190733	.	G	.	.	LowGQX	END=201190760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201190761	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	201190762	.	C	.	.	LowGQX	END=201190828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201190829	.	C	.	.	LowGQX	END=201190876	GT	./.
chr1	201191862	.	T	.	.	LowGQX	END=201191897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201191898	.	C	.	.	LowGQX	END=201191961	GT	./.
chr1	201193805	.	A	.	.	LowGQX	END=201193896	GT	./.
chr1	201193897	.	C	.	.	LowGQX	END=201193900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201193901	.	T	.	.	LowGQX	END=201193903	GT	./.
chr1	201193904	.	T	.	.	LowGQX	END=201193924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201193925	.	A	.	.	LowGQX	.	GT	./.
chr1	201193926	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201193927	.	A	.	.	LowGQX	.	GT	./.
chr1	201193928	.	G	.	.	LowGQX	END=201193946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201193947	.	G	T	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	201193948	.	C	.	.	LowGQX	END=201193992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201193993	.	A	.	.	LowGQX	.	GT	./.
chr1	201193994	.	G	.	.	LowGQX	END=201194004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201194939	.	G	.	.	LowGQX	END=201195258	GT	./.
chr1	201196008	.	A	.	.	LowGQX	END=201196066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	201196067	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	201196068	.	G	.	.	LowGQX	END=201196112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201196113	.	G	.	.	LowGQX	END=201196338	GT	./.
chr1	201197471	.	T	.	.	LowGQX	END=201197570	GT	./.
chr1	201252780	.	G	.	.	PASS	END=201252783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	201252784	.	C	.	.	LowGQX	END=201252785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	201252786	.	C	.	.	PASS	END=201252790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	201252791	.	C	.	.	PASS	END=201252813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	201252814	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:27:60
chr1	201252815	.	C	.	.	PASS	END=201252827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	201252828	.	A	.	.	PASS	END=201252833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	201252834	.	A	.	.	PASS	END=201252835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:60
chr1	201252836	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:24:60
chr1	201252837	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:60:60
chr1	201252838	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:45:60
chr1	201252839	.	C	.	.	PASS	END=201252847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	201252848	.	C	.	.	PASS	END=201252865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	201252866	.	C	T	856.92	PASS	BaseQRankSum=1.255;DP=29;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.418;QD=29.55;ReadPosRankSum=-0.538;SB=-224.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,28:29:36.11:890,36,0:60:36:0.966
chr1	201252867	.	G	.	.	PASS	END=201252878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	201252879	.	G	.	.	PASS	END=201252880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	201252881	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:48:60
chr1	201252882	.	C	.	.	PASS	END=201252963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	201252964	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:69:60
chr1	201252965	.	G	.	.	PASS	END=201252978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	201252979	.	A	.	.	PASS	END=201252997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	201252998	.	T	.	.	PASS	END=201253012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	201253013	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:37:60
chr1	201253014	.	C	.	.	PASS	END=201253020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	201253021	.	A	.	.	PASS	END=201253036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	201253037	.	A	.	.	PASS	END=201253041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	201253042	.	C	.	.	PASS	END=201253048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	201253049	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:15:60
chr1	201253050	.	G	.	.	PASS	END=201253052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	201253053	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:60
chr1	201253054	.	G	.	.	PASS	END=201253055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	201253056	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:39:60
chr1	201253057	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:57:60
chr1	201253058	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:3:60
chr1	201253059	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:45:60
chr1	201253060	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:21:60
chr1	201253061	.	G	.	.	PASS	END=201253068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	201253069	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	201253070	.	T	.	.	PASS	END=201253072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	201253073	.	A	.	.	PASS	END=201253080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	201253081	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:42:60
chr1	201253082	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	201253083	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:42:60
chr1	201263019	.	T	.	.	PASS	END=201263037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	201263038	.	T	.	.	PASS	END=201263062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	201263063	.	C	.	.	PASS	END=201263160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	201263161	.	A	.	.	PASS	END=201263192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	201263193	.	C	.	.	PASS	END=201263219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	201263220	.	T	.	.	PASS	END=201263224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	201282243	.	G	.	.	PASS	END=201282282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	201282283	.	T	.	.	PASS	END=201282305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	201282306	.	A	.	.	PASS	END=201282332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	201282333	.	C	.	.	PASS	END=201282375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	201282376	.	A	.	.	PASS	END=201282409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	201282410	.	C	.	.	PASS	END=201282482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:281:99:60
chr1	201282483	.	A	.	.	PASS	END=201282559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:298:99:60
chr1	201282560	.	T	.	.	PASS	END=201282586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr1	201282587	.	T	.	.	PASS	END=201282614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	201282615	.	C	.	.	PASS	END=201282632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	201282633	.	C	.	.	PASS	END=201282649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	201282650	.	C	.	.	PASS	END=201282679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	201282680	.	C	.	.	PASS	END=201282691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	201282692	.	A	.	.	PASS	END=201282693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	201282694	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:75:60
chr1	201282695	.	G	.	.	PASS	END=201282704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	201282705	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:75:60
chr1	201282706	.	G	.	.	PASS	END=201282708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	201282709	.	T	.	.	PASS	END=201282710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	201282711	.	G	.	.	PASS	END=201282739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr1	201285630	.	G	.	.	PASS	END=201285631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	201285632	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:60
chr1	201285633	.	G	.	.	PASS	END=201285637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	201285638	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:48:60
chr1	201285639	.	C	.	.	PASS	END=201285640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	201285641	.	A	.	25.37	LowGQX	DP=24;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:18:24:1.28:60:1
chr1	201285642	.	G	.	.	PASS	END=201285643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:39:60
chr1	201285644	.	C	.	.	PASS	END=201285645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	201285646	.	A	C	39.16	LowQD;SB	BaseQRankSum=-0.385;DP=23;Dels=0.00;FS=6.990;HRun=4;HaplotypeScore=10.4161;MQ=60;MQ0=0;MQRankSum=-0.175;QD=1.70;ReadPosRankSum=-0.385;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:17,6:23:69.15:69,0,228:60:39:0.261
chr1	201285647	.	C	.	.	PASS	END=201285650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	201285651	.	G	.	.	PASS	END=201285653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:60
chr1	201285654	.	A	.	.	PASS	END=201285656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	201285657	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:30:60
chr1	201285658	.	C	.	.	PASS	END=201285662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	201285663	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:2:60
chr1	201285664	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:72:60
chr1	201285665	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:27:60
chr1	201285666	.	G	.	.	PASS	END=201285667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr1	201285668	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:63:60
chr1	201285669	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:33:60
chr1	201285670	.	A	.	.	PASS	END=201285671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr1	201285672	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:69:60
chr1	201285673	.	C	.	.	PASS	END=201285674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:60
chr1	201285675	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:66:60
chr1	201285676	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:3:60
chr1	201285677	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chr1	201285678	.	C	.	.	PASS	END=201285680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	201285681	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:78:60
chr1	201285682	.	A	.	.	PASS	END=201285685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr1	201285686	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:90:60
chr1	201285687	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:39:60
chr1	201285688	.	A	.	.	PASS	END=201285693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	201285694	.	G	.	.	PASS	END=201285703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	201285704	.	G	.	.	PASS	END=201285711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	201285712	.	C	T	658.70	PASS	BaseQRankSum=-1.855;DP=61;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=18.9906;MQ=60;MQ0=0;MQRankSum=-0.998;QD=10.80;ReadPosRankSum=-1.501;SB=-249.05	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,30:61:99:689,0,716:60:99:0.500
chr1	201285713	.	T	.	.	PASS	END=201285724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	201285725	.	A	.	.	PASS	END=201285735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	201285736	.	T	.	.	PASS	END=201285758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	201285759	.	A	G	3320.03	PASS	DP=116;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7873;MQ=60;MQ0=0;QD=28.62;SB=-1596.48	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,116:116:99:3320,247,0:60:99:1.000
chr1	201285760	.	T	.	.	PASS	END=201285849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	201285850	.	T	.	.	PASS	END=201285869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	201285870	.	C	.	.	PASS	END=201285876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	201286649	.	G	.	.	PASS	END=201286662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	201286663	.	C	.	.	PASS	END=201286674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	201286675	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:60:60
chr1	201286676	.	A	.	.	PASS	END=201286677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:99:60
chr1	201286678	.	C	T	369.05	SB	BaseQRankSum=0.257;DP=39;Dels=0.00;FS=5.828;HRun=0;HaplotypeScore=3.8399;MQ=60;MQ0=0;MQRankSum=-0.409;QD=9.46;ReadPosRankSum=-1.105;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:24,14:39:99:399,0,650:60:99:0.368
chr1	201286679	.	G	.	.	PASS	END=201286718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	201286719	.	T	.	.	PASS	END=201286737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	201286738	.	C	.	.	PASS	END=201286770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	201286771	.	C	T	997.45	PASS	BaseQRankSum=2.638;DP=90;Dels=0.00;FS=10.240;HRun=0;HaplotypeScore=10.5216;MQ=60;MQ0=0;MQRankSum=-0.594;QD=11.08;ReadPosRankSum=-0.497;SB=-98.35	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:51,39:90:99:1027,0,1181:60:99:0.433
chr1	201286772	.	G	.	.	PASS	END=201286793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	201286794	.	T	.	.	PASS	END=201286910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	201286911	.	G	.	.	PASS	END=201286942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	201286943	.	G	.	.	PASS	END=201286954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	201286955	.	C	.	.	PASS	END=201286958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	201287695	.	T	.	.	PASS	END=201287706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	201287707	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:69:60
chr1	201287708	.	G	.	.	PASS	END=201287714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr1	201287715	.	A	.	.	PASS	END=201287716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	201287717	.	A	.	.	PASS	END=201287730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	201287731	.	G	.	.	PASS	END=201287737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	201287738	.	A	.	.	PASS	END=201287739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:75:60
chr1	201287740	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:99:60
chr1	201287741	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:72:60
chr1	201287742	.	C	.	.	PASS	END=201287750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	201287751	.	C	.	.	PASS	END=201287787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	201287788	.	A	.	.	PASS	END=201287860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	201287861	.	T	.	.	PASS	END=201287899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	201287900	.	C	.	.	PASS	END=201287938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	201287939	.	A	.	.	PASS	END=201287974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	201288885	.	C	.	.	PASS	END=201288897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	201288898	.	A	C	2955.73	PASS	DP=114;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;QD=25.93;SB=-1926.13	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,114:114:99:2989,217,0:60:99:1.000
chr1	201288899	.	T	.	.	PASS	END=201288954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	201288955	.	G	A	1170.08	PASS	BaseQRankSum=0.917;DP=100;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=6.7316;MQ=60;MQ0=0;MQRankSum=-0.221;QD=11.70;ReadPosRankSum=1.448;SB=-596.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:51,49:100:99:1200,0,1205:60:99:0.490
chr1	201288956	.	C	.	.	PASS	END=201288989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	201288990	.	G	.	.	PASS	END=201289005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	201289006	.	T	.	.	PASS	END=201289021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	201289022	.	C	.	.	PASS	END=201289038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	201289039	.	T	.	.	PASS	END=201289057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	201289344	.	G	.	.	LowGQX	END=201289345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	201289346	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	201289347	.	C	.	.	LowGQX	END=201289349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	201289350	.	T	.	.	PASS	END=201289353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	201289354	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:60
chr1	201289355	.	C	.	.	PASS	END=201289358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	201289359	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:27:60
chr1	201289360	.	T	.	.	PASS	END=201289365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	201289366	.	G	.	.	PASS	END=201289368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	201289369	.	C	.	.	PASS	END=201289370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	201289371	.	C	.	.	PASS	END=201289377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	201289378	.	C	.	.	PASS	END=201289388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	201289389	.	C	.	.	PASS	END=201289391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	201289392	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:49:60
chr1	201289393	.	A	.	.	PASS	END=201289408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	201289409	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:75:60
chr1	201289410	.	C	.	.	PASS	END=201289433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	201289434	.	T	.	.	PASS	END=201289470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	201289471	.	G	.	.	PASS	END=201289544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	201289545	.	G	A	829.67	PASS	BaseQRankSum=0.276;DP=89;Dels=0.00;FS=1.925;HRun=0;HaplotypeScore=19.0439;MQ=60;MQ0=0;MQRankSum=-1.233;QD=9.32;ReadPosRankSum=1.027;SB=-398.95	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:49,40:89:99:860,0,1032:60:99:0.449
chr1	201289546	.	C	.	.	PASS	END=201289560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	201291055	.	G	.	.	PASS	END=201291073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	201291074	.	G	.	.	PASS	END=201291098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	201291099	.	T	.	.	PASS	END=201291129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	201291130	.	C	.	.	PASS	END=201291262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	201291263	.	T	.	.	PASS	END=201291279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	201291280	.	G	.	.	PASS	END=201291282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	201291283	.	C	T	964.37	PASS	BaseQRankSum=-4.042;DP=140;Dels=0.00;FS=5.886;HRun=0;HaplotypeScore=19.3468;MQ=60;MQ0=0;MQRankSum=0.755;QD=6.89;ReadPosRankSum=-0.548;SB=-419.09	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:67,68:140:99:994,0,1804:60:99:0.504
chr1	201291284	.	G	.	.	PASS	END=201291297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	201291298	.	C	.	.	PASS	END=201291312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	201292090	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:87:60
chr1	201292091	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:66:60
chr1	201292092	.	C	T	399.14	SB	BaseQRankSum=1.349;DP=32;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=6.7237;MQ=60;MQ0=0;MQRankSum=-0.133;QD=12.47;ReadPosRankSum=1.690;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:14,18:32:99:429,0,299:60:99:0.563
chr1	201292093	.	T	.	.	PASS	END=201292095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	201292096	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:90:60
chr1	201292097	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:54:60
chr1	201292098	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:84:60
chr1	201292099	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:63:60
chr1	201292100	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:47:60
chr1	201292101	.	G	.	.	PASS	END=201292108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	201292109	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:54:60
chr1	201292110	.	T	C	949.55	PASS	DP=33;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.8399;MQ=60;MQ0=0;QD=28.77;SB=-114.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,33:33:78.24:983,78,0:60:78:1.000
chr1	201292111	.	T	.	.	PASS	END=201292112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	201292113	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:33:6:60
chr1	201292114	.	C	.	.	PASS	END=201292119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	201292120	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:54:60
chr1	201292121	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:78:60
chr1	201292122	.	A	.	56.55	LowGQX	DP=34;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:27:34:26.56:60:27
chr1	201292123	.	C	.	.	PASS	END=201292127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	201292128	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:48:60
chr1	201292129	.	C	.	.	PASS	END=201292130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:57:60
chr1	201292131	.	T	.	.	PASS	END=201292142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	201292143	.	C	.	.	PASS	END=201292161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr1	201292162	.	C	.	.	PASS	END=201292182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	201292183	.	C	.	.	PASS	END=201292193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	201292194	.	C	T	965.39	PASS	BaseQRankSum=0.012;DP=91;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=15.1507;MQ=60;MQ0=0;MQRankSum=-1.250;QD=10.61;ReadPosRankSum=0.004;SB=-532.29	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:46,45:91:99:995,0,1163:60:99:0.495
chr1	201292195	.	G	.	.	PASS	END=201292217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	201292218	.	C	.	.	PASS	END=201292279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	201292280	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:119:64:60
chr1	201292281	.	T	.	.	PASS	END=201292296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	201292297	.	C	.	.	PASS	END=201292338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	201292339	.	C	.	.	PASS	END=201292355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:96:60
chr1	201292356	.	T	.	.	PASS	END=201292368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:59
chr1	201293505	.	T	.	.	PASS	END=201293516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	201293517	.	A	.	.	PASS	END=201293518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	201293519	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:69:60
chr1	201293520	.	C	.	.	PASS	END=201293550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	201293551	.	C	.	.	PASS	END=201293656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	201293657	.	A	.	.	PASS	END=201293669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	201293670	.	A	.	.	PASS	END=201293699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	201293700	.	A	.	.	PASS	END=201293706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	201293707	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:66:60
chr1	201293708	.	G	.	.	PASS	END=201293715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	201293716	.	T	.	.	PASS	END=201293727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	201293728	.	C	.	.	PASS	END=201293746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	201293747	.	A	.	.	PASS	END=201293760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	201294018	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:66:60
chr1	201294019	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:39:60
chr1	201294020	.	T	.	.	PASS	END=201294027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	201294028	.	C	.	.	PASS	END=201294031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	201294032	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:39:60
chr1	201294033	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:72:60
chr1	201294034	.	T	.	.	PASS	END=201294038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	201294039	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:72:60
chr1	201294040	.	C	.	.	PASS	END=201294047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr1	201294048	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:72:60
chr1	201294049	.	C	.	.	PASS	END=201294081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	201294082	.	C	.	.	PASS	END=201294095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	201294096	.	G	.	.	PASS	END=201294153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	201294154	.	C	.	.	PASS	END=201294190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	201294191	.	C	.	.	PASS	END=201294263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	201294264	.	G	.	.	PASS	END=201294303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	201294304	.	C	.	.	PASS	END=201294306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	201294831	.	T	.	.	PASS	END=201294881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	201294882	.	T	.	.	PASS	END=201294965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	201294966	.	G	.	.	PASS	END=201294998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	201294999	.	T	.	.	PASS	END=201295017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	201297837	.	C	.	.	PASS	END=201297903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	201297904	.	G	.	.	PASS	END=201297964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	201297965	.	G	.	.	PASS	END=201297984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	201297985	.	T	.	.	PASS	END=201298005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	201298006	.	A	.	.	PASS	END=201298011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	201298012	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:30:60
chr1	201298013	.	C	.	.	PASS	END=201298015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	201328287	.	C	.	.	PASS	END=201328349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	201328350	.	C	.	.	PASS	END=201328395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	201328396	.	C	.	.	PASS	END=201328430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	201328431	.	T	.	.	PASS	END=201328434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	201328700	.	G	.	.	PASS	END=201328719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	201328720	.	G	.	.	PASS	END=201328746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	201328747	.	T	.	.	PASS	END=201328841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	201328842	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:93:99:60
chr1	201330356	.	C	.	.	PASS	END=201330405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	201330406	.	C	.	.	PASS	END=201330484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	201330485	.	C	.	.	PASS	END=201330519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	201330520	.	G	.	.	PASS	END=201330548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	201330990	.	T	.	.	PASS	END=201331009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	201331010	.	G	.	.	PASS	END=201331013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	201331014	.	C	.	.	PASS	END=201331052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	201331053	.	T	.	.	PASS	END=201331078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	201331079	.	C	.	.	PASS	END=201331199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	201331200	.	T	.	.	PASS	END=201331208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	201331211	.	T	.	.	PASS	END=201331236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	201331237	.	A	.	.	PASS	END=201331280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	201331281	.	A	.	.	PASS	END=201331308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	201331309	.	C	.	.	PASS	END=201331310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:81:60
chr1	201331469	.	C	.	.	LowGQX	END=201331480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	201331481	.	G	.	.	LowGQX	END=201331490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	201331491	.	G	.	.	LowGQX	END=201331507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	201331508	.	A	.	.	LowGQX	END=201331509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201331510	.	C	.	.	LowGQX	END=201331518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	201331519	.	C	.	4.69	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.01:60:0
chr1	201331520	.	C	.	.	LowGQX	END=201331526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201331527	.	A	.	.	LowGQX	.	GT	./.
chr1	201331528	.	C	.	.	LowGQX	END=201331531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201331532	.	G	.	.	LowGQX	.	GT	./.
chr1	201331533	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201331534	.	A	.	.	LowGQX	.	GT	./.
chr1	201331535	.	A	.	.	LowGQX	END=201331536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201331537	.	C	.	.	LowGQX	END=201331538	GT	./.
chr1	201331539	.	T	.	.	LowGQX	END=201331543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201331544	.	G	.	.	LowGQX	END=201331545	GT	./.
chr1	201331546	.	G	.	.	LowGQX	END=201331551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201331552	.	C	.	.	LowGQX	.	GT	./.
chr1	201331553	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201331554	.	T	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	201331555	.	A	.	.	LowGQX	END=201331556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201331557	.	A	.	.	LowGQX	.	GT	./.
chr1	201331558	.	A	.	.	LowGQX	END=201331559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201331560	.	A	.	.	LowGQX	.	GT	./.
chr1	201331561	.	A	.	.	LowGQX	END=201331568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201332409	.	C	.	.	PASS	END=201332518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	201332519	.	G	.	.	PASS	END=201332583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:89:60
chr1	201332584	.	A	.	.	PASS	END=201332585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	201333375	.	G	.	.	PASS	END=201333402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	201333403	.	G	.	.	PASS	END=201333414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	201333415	.	G	.	.	PASS	END=201333475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	201333476	.	G	.	.	PASS	END=201333554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	201334268	.	A	.	.	PASS	END=201334287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	201334288	.	A	.	.	PASS	END=201334307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	201334308	.	T	.	.	PASS	END=201334381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	201334382	.	G	A	1583.67	PASS	BaseQRankSum=3.987;DP=143;Dels=0.00;FS=2.217;HRun=1;HaplotypeScore=11.4134;MQ=60;MQ0=0;MQRankSum=-0.483;QD=11.07;ReadPosRankSum=1.046;SB=-790.67	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:76,67:143:99:1614,0,1743:60:99:0.469
chr1	201334383	.	A	.	.	PASS	END=201334414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	201334415	.	C	.	.	PASS	END=201334442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	201334443	.	T	.	.	PASS	END=201334455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	201334456	.	C	.	.	PASS	END=201334486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	201334687	.	C	.	.	PASS	END=201334708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:96:60
chr1	201334709	.	G	.	.	PASS	END=201334731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	201334732	.	G	.	.	PASS	END=201334847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	201334848	.	C	.	.	PASS	END=201334849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	201335915	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:84:60
chr1	201335916	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:48:60
chr1	201335917	.	T	.	.	PASS	END=201335919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	201335920	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:57:60
chr1	201335921	.	C	.	.	PASS	END=201335956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	201335957	.	C	.	.	PASS	END=201336007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:93:60
chr1	201336008	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:64:60
chr1	201336009	.	A	.	.	PASS	END=201336022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:96:60
chr1	201336023	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:66:60
chr1	201336024	.	C	.	.	PASS	END=201336032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr1	201336033	.	G	.	.	PASS	END=201336034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:62:60
chr1	201336035	.	G	.	.	PASS	END=201336046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	201336047	.	T	.	.	PASS	END=201336051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:60:60
chr1	201336052	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:42:60
chr1	201336053	.	C	.	.	PASS	END=201336080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	201336081	.	T	.	.	PASS	END=201336096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	201336848	.	G	.	.	PASS	END=201336869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:96:60
chr1	201336870	.	C	.	.	PASS	END=201336884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	201336885	.	C	.	.	PASS	END=201336985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	201337239	.	A	.	.	PASS	END=201337255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	201337256	.	C	.	.	PASS	END=201337295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	201337296	.	C	.	.	PASS	END=201337383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	201337384	.	A	.	.	PASS	END=201337404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	201337405	.	T	.	.	PASS	END=201337406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	201337454	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:81:60
chr1	201337455	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:42:60
chr1	201337456	.	C	.	.	PASS	END=201337457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	201337458	.	A	.	.	PASS	END=201337462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	201337463	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:30:60
chr1	201337464	.	C	.	.	PASS	END=201337465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	201337466	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:27:60
chr1	201337467	.	G	.	.	PASS	END=201337468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	201337469	.	T	.	63.10	PASS	DP=20;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:16:20:33.10:60:33
chr1	201337470	.	C	.	.	PASS	END=201337471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	201337472	.	A	.	.	PASS	END=201337475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	201337476	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:60
chr1	201337477	.	A	.	.	PASS	END=201337478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	201337479	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	201337480	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	201337481	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	201337482	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	201337483	.	G	.	.	LowGQX	END=201337484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:60
chr1	201337485	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	201337486	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	201337487	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	201337488	.	A	.	.	LowGQX	END=201337489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:15:60
chr1	201337490	.	C	.	.	PASS	END=201337491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	201337492	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr1	201337493	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:12:60
chr1	201337494	.	C	.	.	PASS	END=201337495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	201337496	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:12:60
chr1	201337497	.	G	.	.	PASS	END=201337498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	201337499	.	T	.	6.89	LowGQX	DP=12;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:12:0.02:60:0
chr1	201337500	.	G	.	.	PASS	END=201337502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	201337503	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:24:60
chr1	201337504	.	G	.	.	PASS	END=201337505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	201337506	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:45:60
chr1	201337507	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:18:60
chr1	201337508	.	G	.	.	PASS	END=201337518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	201337519	.	T	.	.	PASS	END=201337521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	201337522	.	T	.	.	PASS	END=201337527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	201337528	.	T	.	.	PASS	END=201337538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	201337539	.	C	.	.	PASS	END=201337550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	201337551	.	T	.	.	PASS	END=201337552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	201337553	.	A	.	.	PASS	END=201337557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	201337558	.	C	.	.	PASS	END=201337568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	201337569	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr1	201337570	.	C	.	.	PASS	END=201337571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	201337572	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	201337573	.	C	.	.	PASS	END=201337574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	201337575	.	T	.	.	LowGQX	END=201337578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	201337579	.	T	.	.	LowGQX	END=201337583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	201337584	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:60
chr1	201337585	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	201337586	.	G	.	.	LowGQX	END=201337591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	201337592	.	C	.	.	LowGQX	END=201337596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	201337597	.	T	.	.	LowGQX	END=201337600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	201338426	.	A	.	.	PASS	END=201338525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	201338893	.	A	.	.	PASS	END=201338895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	201338896	.	T	C	803.91	PASS	BaseQRankSum=0.987;DP=77;Dels=0.00;FS=0.920;HRun=0;HaplotypeScore=16.3063;MQ=60;MQ0=0;MQRankSum=0.852;QD=10.44;ReadPosRankSum=0.717;SB=-401.93	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:39,37:77:99:834,0,1000:60:99:0.487
chr1	201338897	.	G	.	.	PASS	END=201338937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	201338938	.	T	.	.	PASS	END=201338988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	201338989	.	T	.	.	PASS	END=201339024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	201341104	.	A	.	.	PASS	END=201341123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	201341124	.	T	.	.	PASS	END=201341154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	201341155	.	C	.	.	PASS	END=201341175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	201341175	.	CAGAAG	C	6728.35	PASS	BaseQRankSum=-0.687;DP=202;FS=2.632;HRun=0;HaplotypeScore=192.1599;MQ=60;MQ0=0;MQRankSum=0.489;QD=33.31;ReadPosRankSum=3.437;SB=-2590.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:108,94:202:99:6728,0,6851:60:99:0.465
chr1	201341176	.	A	.	261.73	PASS	DP=202;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:107:108:99:60:99
chr1	201341177	.	G	.	264.72	PASS	DP=197;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:103:103:99:60:99
chr1	201341178	.	A	.	261.74	PASS	DP=198;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:104:104:99:60:99
chr1	201341179	.	A	.	264.75	PASS	DP=198;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:104:104:99:60:99
chr1	201341180	.	G	.	255.73	PASS	DP=198;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:103:104:99:60:99
chr1	201341181	.	A	.	.	PASS	END=201341290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	201341291	.	C	.	.	PASS	END=201341319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	201341320	.	A	.	.	PASS	END=201341334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	201342167	.	A	.	.	PASS	END=201342188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	201342189	.	G	.	.	PASS	END=201342208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	201342209	.	C	.	.	PASS	END=201342224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	201342225	.	A	.	.	PASS	END=201342233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	201342234	.	C	.	.	PASS	END=201342239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	201342240	.	C	.	.	PASS	END=201342263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	201342264	.	G	.	.	PASS	END=201342266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	201342283	.	A	.	.	PASS	END=201342324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	201342325	.	A	.	.	PASS	END=201342334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	201342335	.	T	.	.	PASS	END=201342366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	201342367	.	C	.	.	PASS	END=201342414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	201342415	.	G	.	.	PASS	END=201342439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	201346669	.	A	.	.	LowGQX	END=201346828	GT	./.
chr1	201350909	.	G	.	.	LowGQX	END=201350996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201350997	.	T	.	.	LowGQX	.	GT	./.
chr1	201350998	.	C	.	.	LowGQX	END=201351022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201351023	.	T	.	.	LowGQX	END=201351068	GT	./.
chr1	201351368	.	C	.	.	LowGQX	END=201351467	GT	./.
chr1	201351775	.	G	.	.	LowGQX	END=201351818	GT	./.
chr1	201351819	.	T	.	.	LowGQX	END=201351874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201352200	.	A	.	.	LowGQX	END=201352341	GT	./.
chr1	201352432	.	A	.	.	LowGQX	END=201352531	GT	./.
chr1	201353862	.	T	.	.	LowGQX	END=201353965	GT	./.
chr1	201354827	.	A	.	.	LowGQX	END=201354841	GT	./.
chr1	201354842	.	G	.	.	LowGQX	END=201354907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201354908	.	T	.	.	LowGQX	.	GT	./.
chr1	201354909	.	C	.	.	LowGQX	END=201354935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201355461	.	A	.	.	LowGQX	END=201355786	GT	./.
chr1	201355787	.	T	.	.	LowGQX	END=201355827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201355828	.	A	.	.	LowGQX	.	GT	./.
chr1	201355829	.	C	.	.	LowGQX	END=201355883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201355884	.	A	.	.	LowGQX	.	GT	./.
chr1	201355885	.	T	.	.	LowGQX	END=201355886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201355887	.	G	.	.	LowGQX	.	GT	./.
chr1	201355888	.	A	.	.	LowGQX	END=201355905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201355906	.	G	.	.	LowGQX	.	GT	./.
chr1	201355907	.	G	.	.	LowGQX	END=201355937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201355938	.	G	.	.	LowGQX	END=201355966	GT	./.
chr1	201355967	.	T	.	.	LowGQX	END=201355970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201355971	.	A	.	.	LowGQX	.	GT	./.
chr1	201355972	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201355973	.	C	.	.	LowGQX	.	GT	./.
chr1	201355974	.	C	.	.	LowGQX	END=201355991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201355992	.	G	.	.	LowGQX	.	GT	./.
chr1	201355993	.	G	.	.	LowGQX	END=201355994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201355995	.	T	.	.	LowGQX	.	GT	./.
chr1	201355996	.	C	.	.	LowGQX	END=201355999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201356000	.	G	.	.	LowGQX	.	GT	./.
chr1	201356001	.	C	.	.	LowGQX	END=201356006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201356007	.	A	.	.	LowGQX	.	GT	./.
chr1	201356008	.	A	.	.	LowGQX	END=201356010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201356011	.	T	.	.	LowGQX	.	GT	./.
chr1	201356012	.	C	.	.	LowGQX	END=201356023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201356024	.	G	.	.	LowGQX	.	GT	./.
chr1	201356025	.	G	.	.	LowGQX	END=201356037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201356038	.	G	.	.	LowGQX	.	GT	./.
chr1	201356039	.	C	.	.	LowGQX	END=201356100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201356101	.	T	.	.	LowGQX	.	GT	./.
chr1	201356102	.	C	.	.	LowGQX	END=201356186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201356187	.	A	.	.	LowGQX	.	GT	./.
chr1	201356188	.	C	.	.	LowGQX	END=201356192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201356193	.	C	.	.	LowGQX	.	GT	./.
chr1	201356194	.	G	.	.	LowGQX	END=201356218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201356219	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201356220	.	C	.	.	LowGQX	END=201356275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201356276	.	G	.	.	LowGQX	END=201356308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	201358286	.	A	.	.	LowGQX	END=201358379	GT	./.
chr1	201358380	.	G	.	.	LowGQX	END=201358396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201358397	.	C	.	.	LowGQX	.	GT	./.
chr1	201358398	.	C	.	.	LowGQX	END=201358409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201358410	.	C	.	.	LowGQX	.	GT	./.
chr1	201358411	.	A	.	.	LowGQX	END=201358412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201358413	.	A	.	.	LowGQX	.	GT	./.
chr1	201358414	.	G	.	.	LowGQX	END=201358426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201358427	.	C	.	.	LowGQX	END=201358429	GT	./.
chr1	201358430	.	G	.	.	LowGQX	END=201358431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201358432	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201358433	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201360206	.	C	.	.	LowGQX	END=201360309	GT	./.
chr1	201368306	.	C	.	.	LowGQX	END=201368402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201368403	.	A	.	.	LowGQX	END=201368465	GT	./.
chr1	201368468	.	G	.	.	LowGQX	END=201368627	GT	./.
chr1	201379454	.	C	.	.	LowGQX	END=201379485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	201379486	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	201379487	.	A	.	.	LowGQX	END=201379565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201380463	.	G	.	.	LowGQX	END=201380663	GT	./.
chr1	201382155	.	C	.	.	LowGQX	END=201382191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201382192	.	T	.	.	LowGQX	.	GT	./.
chr1	201382193	.	G	.	.	LowGQX	END=201382254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201383644	.	A	.	.	LowGQX	END=201383718	GT	./.
chr1	201383719	.	G	.	.	LowGQX	END=201383779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201384313	.	T	.	.	LowGQX	END=201384319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201384320	.	A	.	.	LowGQX	.	GT	./.
chr1	201384321	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201384322	.	A	.	.	LowGQX	.	GT	./.
chr1	201384323	.	G	.	.	LowGQX	END=201384332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201384333	.	A	.	.	LowGQX	.	GT	./.
chr1	201384334	.	G	.	.	LowGQX	END=201384336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201384337	.	T	.	.	LowGQX	END=201384339	GT	./.
chr1	201384340	.	C	.	.	LowGQX	END=201384344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201384345	.	A	.	.	LowGQX	.	GT	./.
chr1	201384346	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201384347	.	C	.	.	LowGQX	END=201384349	GT	./.
chr1	201384350	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201384351	.	A	.	.	LowGQX	END=201384412	GT	./.
chr1	201386196	.	C	.	.	LowGQX	END=201386204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201386205	.	A	.	.	LowGQX	.	GT	./.
chr1	201386206	.	G	.	.	LowGQX	END=201386295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201386805	.	G	.	.	LowGQX	END=201386964	GT	./.
chr1	201437519	.	G	.	.	LowGQX	END=201437918	GT	./.
chr1	201453102	.	T	.	.	LowGQX	END=201453201	GT	./.
chr1	201453830	.	T	.	.	LowGQX	END=201453929	GT	./.
chr1	201454408	.	C	.	.	LowGQX	END=201454507	GT	./.
chr1	201456088	.	G	.	.	LowGQX	END=201456148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201456149	.	A	.	.	LowGQX	.	GT	./.
chr1	201456150	.	A	.	.	LowGQX	END=201456187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201457981	.	A	.	.	LowGQX	END=201458114	GT	./.
chr1	201459302	.	A	.	.	LowGQX	END=201459474	GT	./.
chr1	201465318	.	A	.	.	LowGQX	END=201465433	GT	./.
chr1	201598524	.	T	.	.	LowGQX	END=201598683	GT	./.
chr1	201617761	.	G	.	.	LowGQX	END=201618025	GT	./.
chr1	201618026	.	C	.	.	LowGQX	END=201618072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201618073	.	A	.	.	LowGQX	.	GT	./.
chr1	201618074	.	A	.	.	LowGQX	END=201618175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201618176	.	C	.	.	LowGQX	END=201618213	GT	./.
chr1	201618214	.	T	.	.	LowGQX	END=201618254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201618255	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	201618256	.	G	.	.	LowGQX	END=201618362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201618363	.	T	.	.	LowGQX	END=201618555	GT	./.
chr1	201681943	.	A	.	.	LowGQX	END=201682049	GT	./.
chr1	201687516	.	A	.	.	LowGQX	END=201687518	GT	./.
chr1	201687519	.	T	.	.	LowGQX	END=201687573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201687574	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:3.01:60:3
chr1	201687575	.	C	.	.	LowGQX	END=201687634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	201687635	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	201687636	.	G	.	.	LowGQX	END=201687682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201687683	.	G	.	.	LowGQX	.	GT	./.
chr1	201687684	.	C	.	.	LowGQX	END=201687688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201687689	.	C	.	.	LowGQX	.	GT	./.
chr1	201687690	.	T	.	.	LowGQX	END=201687706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201687707	.	A	.	.	LowGQX	END=201687708	GT	./.
chr1	201687709	.	G	.	.	LowGQX	END=201687722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201687723	.	C	.	.	LowGQX	END=201687724	GT	./.
chr1	201687725	.	C	.	.	LowGQX	END=201687727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201687728	.	C	.	.	LowGQX	.	GT	./.
chr1	201687729	.	A	.	.	LowGQX	END=201687732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201687733	.	C	.	.	LowGQX	.	GT	./.
chr1	201687734	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201687735	.	A	.	.	LowGQX	.	GT	./.
chr1	201687736	.	T	.	.	LowGQX	END=201687738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201687739	.	G	.	.	LowGQX	.	GT	./.
chr1	201687740	.	C	.	.	LowGQX	END=201687742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201687743	.	C	.	.	LowGQX	.	GT	./.
chr1	201687744	.	C	.	.	LowGQX	END=201687753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201687754	.	T	.	.	LowGQX	.	GT	./.
chr1	201687755	.	C	.	.	LowGQX	END=201687775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201687776	.	G	.	.	LowGQX	.	GT	./.
chr1	201687777	.	C	.	.	LowGQX	END=201687784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201687785	.	A	.	.	LowGQX	.	GT	./.
chr1	201687786	.	T	.	.	LowGQX	END=201687788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201687789	.	C	.	.	LowGQX	.	GT	./.
chr1	201687790	.	T	.	.	LowGQX	END=201687793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201687794	.	C	.	.	LowGQX	.	GT	./.
chr1	201687795	.	T	.	.	LowGQX	END=201687799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201687800	.	T	.	.	LowGQX	.	GT	./.
chr1	201687801	.	G	.	.	LowGQX	END=201687840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201687841	.	T	.	.	LowGQX	END=201687885	GT	./.
chr1	201709068	.	T	.	.	LowGQX	END=201709227	GT	./.
chr1	201749547	.	A	.	.	LowGQX	END=201749689	GT	./.
chr1	201750138	.	A	.	.	LowGQX	END=201750439	GT	./.
chr1	201751302	.	A	.	.	LowGQX	END=201751999	GT	./.
chr1	201752532	.	A	.	.	LowGQX	END=201752875	GT	./.
chr1	201752876	.	C	.	.	LowGQX	END=201752882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201752883	.	C	.	.	LowGQX	.	GT	./.
chr1	201752884	.	C	.	.	LowGQX	END=201752891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201752892	.	A	.	.	LowGQX	.	GT	./.
chr1	201752893	.	C	.	.	LowGQX	END=201752899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201752900	.	T	.	.	LowGQX	END=201752902	GT	./.
chr1	201752903	.	T	.	.	LowGQX	END=201752908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201752909	.	T	.	.	LowGQX	.	GT	./.
chr1	201752910	.	G	.	.	LowGQX	END=201752912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201752913	.	G	.	.	LowGQX	.	GT	./.
chr1	201752914	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201752915	.	T	.	.	LowGQX	.	GT	./.
chr1	201752916	.	C	.	.	LowGQX	END=201752927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201752928	.	G	.	.	LowGQX	END=201752929	GT	./.
chr1	201752930	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201752931	.	A	.	.	LowGQX	.	GT	./.
chr1	201752932	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201752933	.	G	.	.	LowGQX	END=201752934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201752935	.	A	.	.	LowGQX	.	GT	./.
chr1	201752936	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201752937	.	G	.	.	LowGQX	.	GT	./.
chr1	201752938	.	A	.	.	LowGQX	END=201752940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201752941	.	T	.	.	LowGQX	.	GT	./.
chr1	201752942	.	G	.	.	LowGQX	END=201752944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201752945	.	T	.	.	LowGQX	.	GT	./.
chr1	201752946	.	T	.	.	LowGQX	END=201752948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201752949	.	A	.	.	LowGQX	.	GT	./.
chr1	201752950	.	G	.	.	LowGQX	END=201752965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201752966	.	T	.	.	LowGQX	.	GT	./.
chr1	201752967	.	G	.	.	LowGQX	END=201752982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201754409	.	T	.	.	LowGQX	END=201754508	GT	./.
chr1	201755555	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201755556	.	G	.	.	LowGQX	.	GT	./.
chr1	201755557	.	G	.	.	LowGQX	END=201755562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201755563	.	G	.	.	LowGQX	.	GT	./.
chr1	201755564	.	C	.	.	LowGQX	END=201755628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201755629	.	C	.	.	LowGQX	.	GT	./.
chr1	201755630	.	G	.	.	LowGQX	END=201755696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201755697	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201755698	.	C	.	.	LowGQX	END=201755707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201756756	.	A	.	.	LowGQX	END=201756758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201756759	.	T	.	.	LowGQX	.	GT	./.
chr1	201756760	.	G	.	.	LowGQX	END=201756762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201756763	.	C	.	.	LowGQX	.	GT	./.
chr1	201756764	.	C	.	.	LowGQX	END=201756773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201756774	.	T	.	.	LowGQX	END=201756855	GT	./.
chr1	201757574	.	C	.	.	LowGQX	END=201757768	GT	./.
chr1	201758845	.	T	.	.	LowGQX	END=201758944	GT	./.
chr1	201759644	.	T	.	.	LowGQX	END=201759743	GT	./.
chr1	201759806	.	T	.	.	LowGQX	END=201759905	GT	./.
chr1	201762912	.	T	.	.	LowGQX	END=201763011	GT	./.
chr1	201763227	.	C	.	.	LowGQX	END=201763386	GT	./.
chr1	201763592	.	A	.	.	LowGQX	END=201763785	GT	./.
chr1	201772719	.	A	.	.	LowGQX	END=201772763	GT	./.
chr1	201772764	.	C	.	.	LowGQX	END=201772780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201772781	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	201772782	.	C	.	.	LowGQX	END=201772844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201773081	.	C	.	.	LowGQX	END=201773146	GT	./.
chr1	201773147	.	T	.	.	LowGQX	END=201773161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201773162	.	C	.	.	LowGQX	.	GT	./.
chr1	201773163	.	C	.	.	LowGQX	END=201773218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201773219	.	C	.	.	LowGQX	.	GT	./.
chr1	201773220	.	A	.	.	LowGQX	END=201773240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201773571	.	T	.	.	LowGQX	END=201773670	GT	./.
chr1	201777078	.	T	.	.	LowGQX	END=201777149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201777150	.	A	.	.	LowGQX	.	GT	./.
chr1	201777151	.	T	.	.	LowGQX	END=201777182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201777183	.	C	.	.	LowGQX	END=201777184	GT	./.
chr1	201777185	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201777186	.	T	.	.	LowGQX	.	GT	./.
chr1	201777187	.	C	.	.	LowGQX	END=201777192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201777193	.	C	.	.	LowGQX	END=201777225	GT	./.
chr1	201777226	.	C	.	.	LowGQX	END=201777233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201777234	.	A	.	.	LowGQX	.	GT	./.
chr1	201777235	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201777236	.	C	.	.	LowGQX	.	GT	./.
chr1	201777237	.	A	.	.	LowGQX	END=201777279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201777544	.	A	.	.	LowGQX	END=201778001	GT	./.
chr1	201778290	.	A	.	.	LowGQX	END=201778389	GT	./.
chr1	201778390	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201778391	.	T	.	.	LowGQX	.	GT	./.
chr1	201778568	.	A	.	.	LowGQX	END=201778569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201778570	.	G	.	.	LowGQX	.	GT	./.
chr1	201778571	.	A	.	.	LowGQX	END=201778573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201778574	.	T	.	.	LowGQX	.	GT	./.
chr1	201778575	.	G	.	.	LowGQX	END=201778577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201778578	.	G	.	.	LowGQX	.	GT	./.
chr1	201778579	.	C	.	.	LowGQX	END=201778582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201778583	.	A	.	.	LowGQX	.	GT	./.
chr1	201778584	.	G	.	.	LowGQX	END=201778595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201778596	.	G	.	.	LowGQX	.	GT	./.
chr1	201778597	.	G	.	.	LowGQX	END=201778603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201778604	.	G	.	.	LowGQX	.	GT	./.
chr1	201778605	.	C	.	.	LowGQX	END=201778609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201778610	.	T	.	.	LowGQX	END=201778637	GT	./.
chr1	201778638	.	G	.	.	LowGQX	END=201778667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201779072	.	A	.	.	LowGQX	END=201779235	GT	./.
chr1	201779649	.	A	.	.	LowGQX	END=201779888	GT	./.
chr1	201780694	.	T	.	.	LowGQX	END=201780716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201780717	.	T	.	.	LowGQX	END=201780887	GT	./.
chr1	201781017	.	C	.	.	LowGQX	END=201781116	GT	./.
chr1	201781589	.	G	.	.	LowGQX	END=201781665	GT	./.
chr1	201781666	.	G	.	.	LowGQX	END=201781792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201782266	.	A	.	.	LowGQX	END=201782354	GT	./.
chr1	201782355	.	A	.	.	LowGQX	END=201782388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201786214	.	A	.	.	LowGQX	END=201786302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201786303	.	A	.	.	LowGQX	.	GT	./.
chr1	201786304	.	A	.	.	LowGQX	END=201786330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201786331	.	T	.	.	LowGQX	.	GT	./.
chr1	201786332	.	G	.	.	LowGQX	END=201786370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201786371	.	A	.	.	LowGQX	END=201786415	GT	./.
chr1	201788963	.	A	.	.	LowGQX	END=201789062	GT	./.
chr1	201798336	.	A	.	.	LowGQX	END=201798502	GT	./.
chr1	201816388	.	A	.	.	LowGQX	END=201816487	GT	./.
chr1	201816674	.	T	.	.	LowGQX	END=201816773	GT	./.
chr1	201817519	.	A	.	.	LowGQX	END=201817724	GT	./.
chr1	201821227	.	T	.	.	LowGQX	END=201821326	GT	./.
chr1	201822133	.	T	.	.	LowGQX	END=201822187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	201822188	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	201822189	.	T	.	.	LowGQX	END=201822192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	201822193	.	C	.	36	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.01:60:6
chr1	201822194	.	A	.	.	LowGQX	END=201822232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	201823721	.	A	.	.	LowGQX	END=201823844	GT	./.
chr1	201823949	.	A	.	.	LowGQX	END=201823979	GT	./.
chr1	201823980	.	A	.	.	LowGQX	END=201823982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201823983	.	G	.	.	LowGQX	END=201823984	GT	./.
chr1	201823985	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201823986	.	C	.	.	LowGQX	.	GT	./.
chr1	201823987	.	A	.	.	LowGQX	END=201823993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201823994	.	C	.	.	LowGQX	END=201823995	GT	./.
chr1	201823996	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201823997	.	C	.	.	LowGQX	END=201823999	GT	./.
chr1	201824000	.	T	.	.	LowGQX	END=201824001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201824002	.	C	.	.	LowGQX	.	GT	./.
chr1	201824003	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201824004	.	G	.	.	LowGQX	END=201824005	GT	./.
chr1	201824006	.	A	.	.	LowGQX	END=201824010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201824011	.	C	.	.	LowGQX	.	GT	./.
chr1	201824012	.	T	.	.	LowGQX	END=201824014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201824015	.	C	.	.	LowGQX	.	GT	./.
chr1	201824016	.	T	.	.	LowGQX	END=201824027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201824028	.	C	.	.	LowGQX	END=201824029	GT	./.
chr1	201824030	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201824031	.	C	.	.	LowGQX	END=201824032	GT	./.
chr1	201824033	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201824034	.	A	.	.	LowGQX	END=201824037	GT	./.
chr1	201824038	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201824039	.	A	.	.	LowGQX	.	GT	./.
chr1	201824040	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201824041	.	A	.	.	LowGQX	.	GT	./.
chr1	201824042	.	G	.	.	LowGQX	END=201824044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201824045	.	C	.	.	LowGQX	END=201824046	GT	./.
chr1	201824047	.	G	.	.	LowGQX	END=201824050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201824051	.	T	.	.	LowGQX	.	GT	./.
chr1	201824052	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201824053	.	T	.	.	LowGQX	.	GT	./.
chr1	201824232	.	T	.	.	LowGQX	.	GT	./.
chr1	201824233	.	T	.	.	LowGQX	END=201824251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201824252	.	T	.	.	LowGQX	END=201824331	GT	./.
chr1	201824879	.	C	.	.	LowGQX	END=201825064	GT	./.
chr1	201826222	.	A	.	.	LowGQX	END=201826283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201826284	.	T	.	.	LowGQX	END=201826305	GT	./.
chr1	201826306	.	C	.	.	LowGQX	END=201826324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201827573	.	A	.	.	LowGQX	END=201827683	GT	./.
chr1	201827981	.	A	.	.	LowGQX	END=201827997	GT	./.
chr1	201827998	.	G	.	.	LowGQX	END=201828077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201828078	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201828079	.	T	.	.	LowGQX	END=201828124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201832574	.	A	.	.	LowGQX	END=201832737	GT	./.
chr1	201835859	.	A	.	.	LowGQX	END=201836089	GT	./.
chr1	201837774	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201837775	.	G	.	.	LowGQX	.	GT	./.
chr1	201837776	.	A	.	.	LowGQX	END=201837778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201837779	.	C	.	.	LowGQX	END=201837780	GT	./.
chr1	201837781	.	G	.	.	LowGQX	END=201837782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201837783	.	C	.	.	LowGQX	.	GT	./.
chr1	201837784	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201837785	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201837786	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201837787	.	G	.	.	LowGQX	END=201837788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201837789	.	C	.	.	LowGQX	.	GT	./.
chr1	201837790	.	T	.	.	LowGQX	END=201837792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201837793	.	C	.	.	LowGQX	.	GT	./.
chr1	201837794	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201837795	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201837796	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201837797	.	C	.	.	LowGQX	END=201837799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201837800	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201837801	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201837802	.	G	.	.	LowGQX	END=201837815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201837816	.	G	.	.	LowGQX	.	GT	./.
chr1	201837817	.	C	.	.	LowGQX	END=201837824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201837825	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201837826	.	A	.	.	LowGQX	END=201837828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201837829	.	G	.	.	LowGQX	.	GT	./.
chr1	201837830	.	A	.	.	LowGQX	END=201837831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201837832	.	G	.	.	LowGQX	END=201837834	GT	./.
chr1	201837835	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201837836	.	G	.	.	LowGQX	.	GT	./.
chr1	201837837	.	T	.	.	LowGQX	END=201837838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201837839	.	A	.	.	LowGQX	END=201837840	GT	./.
chr1	201837841	.	G	.	.	LowGQX	END=201837842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201837843	.	C	.	.	LowGQX	.	GT	./.
chr1	201837844	.	C	.	.	LowGQX	END=201837845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201837846	.	A	.	.	LowGQX	.	GT	./.
chr1	201837847	.	A	.	.	LowGQX	END=201837848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201837849	.	G	.	.	LowGQX	END=201837850	GT	./.
chr1	201837851	.	A	.	.	LowGQX	END=201837852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201837853	.	A	.	.	LowGQX	.	GT	./.
chr1	201837854	.	T	.	.	LowGQX	END=201837858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201837859	.	C	.	.	LowGQX	.	GT	./.
chr1	201837860	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201837861	.	G	.	.	LowGQX	.	GT	./.
chr1	201837862	.	A	.	.	LowGQX	END=201837863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201837864	.	T	.	.	LowGQX	END=201837865	GT	./.
chr1	201837866	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201837867	.	C	.	.	LowGQX	.	GT	./.
chr1	201837868	.	A	.	.	LowGQX	END=201837870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201837871	.	C	.	.	LowGQX	.	GT	./.
chr1	201837872	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201837873	.	G	.	.	LowGQX	.	GT	./.
chr1	201837874	.	G	.	.	LowGQX	END=201837875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201837876	.	C	.	.	LowGQX	.	GT	./.
chr1	201837877	.	A	.	.	LowGQX	END=201837878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201837879	.	C	.	.	LowGQX	.	GT	./.
chr1	201837880	.	A	.	.	LowGQX	END=201837881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201837882	.	A	.	.	LowGQX	END=201837926	GT	./.
chr1	201838716	.	A	.	.	LowGQX	END=201838848	GT	./.
chr1	201839709	.	A	.	.	LowGQX	END=201839988	GT	./.
chr1	201840287	.	A	.	.	LowGQX	END=201840457	GT	./.
chr1	201841954	.	A	.	.	LowGQX	END=201842091	GT	./.
chr1	201843376	.	A	.	.	LowGQX	END=201843502	GT	./.
chr1	201843958	.	A	.	.	LowGQX	END=201844066	GT	./.
chr1	201844269	.	A	.	.	LowGQX	END=201844299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201844300	.	G	.	.	LowGQX	.	GT	./.
chr1	201844301	.	A	.	.	LowGQX	END=201844312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201844313	.	A	.	.	LowGQX	.	GT	./.
chr1	201844314	.	C	.	.	LowGQX	END=201844318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201844319	.	A	.	.	LowGQX	.	GT	./.
chr1	201844320	.	T	.	.	LowGQX	END=201844324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201844325	.	T	.	.	LowGQX	.	GT	./.
chr1	201844326	.	G	.	.	LowGQX	END=201844345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201844346	.	T	.	.	LowGQX	.	GT	./.
chr1	201844347	.	T	.	.	LowGQX	END=201844361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201844362	.	G	.	.	LowGQX	.	GT	./.
chr1	201844363	.	G	.	.	LowGQX	END=201844368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201845070	.	A	.	.	LowGQX	END=201845357	GT	./.
chr1	201858050	.	G	.	.	LowGQX	END=201858209	GT	./.
chr1	201858571	.	A	.	.	LowGQX	END=201858673	GT	./.
chr1	201858674	.	C	.	.	LowGQX	END=201858746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201859580	.	A	.	.	LowGQX	END=201859717	GT	./.
chr1	201860507	.	C	.	.	LowGQX	END=201860698	GT	./.
chr1	201860902	.	C	.	.	LowGQX	END=201861001	GT	./.
chr1	201865644	.	A	.	.	LowGQX	END=201865838	GT	./.
chr1	201867406	.	T	.	.	LowGQX	END=201867419	GT	./.
chr1	201867420	.	G	.	.	LowGQX	END=201867526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201868364	.	A	.	.	LowGQX	END=201868744	GT	./.
chr1	201868745	.	G	.	.	LowGQX	END=201868896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201868897	.	T	.	.	LowGQX	.	GT	./.
chr1	201868898	.	T	.	.	LowGQX	END=201868945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201868946	.	T	.	.	LowGQX	.	GT	./.
chr1	201868947	.	G	.	.	LowGQX	END=201868986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201868987	.	G	.	.	LowGQX	END=201869116	GT	./.
chr1	201869117	.	A	.	.	LowGQX	END=201869186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201869187	.	A	.	.	LowGQX	.	GT	./.
chr1	201869188	.	A	.	.	LowGQX	END=201869190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201869191	.	A	.	.	LowGQX	.	GT	./.
chr1	201869192	.	T	.	.	LowGQX	END=201869214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201869215	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201869216	.	C	.	.	LowGQX	END=201869248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201869249	.	C	.	.	LowGQX	.	GT	./.
chr1	201869250	.	A	.	.	LowGQX	END=201869253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201869254	.	G	.	.	LowGQX	.	GT	./.
chr1	201869255	.	G	.	.	LowGQX	END=201869266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201869267	.	C	.	.	LowGQX	END=201869307	GT	./.
chr1	201869308	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201869309	.	G	.	.	LowGQX	.	GT	./.
chr1	201869310	.	T	.	.	LowGQX	END=201869311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201869312	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201869313	.	G	.	.	LowGQX	END=201869315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201869316	.	T	.	.	LowGQX	.	GT	./.
chr1	201869317	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201869318	.	C	.	.	LowGQX	.	GT	./.
chr1	201869319	.	A	.	.	LowGQX	END=201869334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201869335	.	T	.	.	LowGQX	.	GT	./.
chr1	201869336	.	C	.	.	LowGQX	END=201869338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201869339	.	C	.	.	LowGQX	END=201869340	GT	./.
chr1	201869341	.	T	.	.	LowGQX	END=201869350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201869351	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201869352	.	G	.	.	LowGQX	END=201869361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201869362	.	C	.	.	LowGQX	.	GT	./.
chr1	201869363	.	C	.	.	LowGQX	END=201869365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201869366	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201869367	.	T	.	.	LowGQX	END=201869389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201869390	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	201869391	.	C	.	.	LowGQX	END=201869400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201869401	.	T	.	.	LowGQX	.	GT	./.
chr1	201869402	.	C	.	.	LowGQX	END=201869409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201869410	.	C	.	.	LowGQX	.	GT	./.
chr1	201869411	.	C	.	.	LowGQX	END=201869417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201869418	.	T	G	3.07	LowGQX;LowQD;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=1.54;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:30,0,30:60:3:0.500
chr1	201869419	.	C	.	.	LowGQX	END=201869420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	201869421	.	T	.	.	LowGQX	.	GT	./.
chr1	201869422	.	T	.	.	LowGQX	END=201869458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201869459	.	T	.	.	LowGQX	END=201869879	GT	./.
chr1	201915207	.	C	.	.	LowGQX	END=201915272	GT	./.
chr1	201915273	.	C	.	.	LowGQX	END=201915275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915276	.	G	.	.	LowGQX	.	GT	./.
chr1	201915277	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915278	.	T	.	.	LowGQX	END=201915281	GT	./.
chr1	201915282	.	A	.	.	LowGQX	END=201915285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915286	.	A	.	.	LowGQX	.	GT	./.
chr1	201915287	.	C	.	.	LowGQX	END=201915288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915289	.	C	.	.	LowGQX	.	GT	./.
chr1	201915290	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915291	.	T	.	.	LowGQX	END=201915292	GT	./.
chr1	201915293	.	G	.	.	LowGQX	END=201915297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915298	.	T	.	.	LowGQX	END=201915300	GT	./.
chr1	201915301	.	C	.	.	LowGQX	END=201915305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915306	.	T	.	.	LowGQX	.	GT	./.
chr1	201915307	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915308	.	T	.	.	LowGQX	END=201915309	GT	./.
chr1	201915310	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915311	.	T	.	.	LowGQX	END=201915313	GT	./.
chr1	201915314	.	C	.	.	LowGQX	END=201915324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915325	.	C	.	.	LowGQX	END=201915329	GT	./.
chr1	201915330	.	C	.	.	LowGQX	END=201915336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915337	.	A	.	.	LowGQX	.	GT	./.
chr1	201915338	.	C	.	.	LowGQX	END=201915342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915343	.	G	.	.	LowGQX	END=201915346	GT	./.
chr1	201915347	.	G	.	.	LowGQX	END=201915349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915350	.	T	.	.	LowGQX	.	GT	./.
chr1	201915351	.	C	.	.	LowGQX	END=201915353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915354	.	C	.	.	LowGQX	END=201915355	GT	./.
chr1	201915356	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915357	.	C	.	.	LowGQX	END=201915358	GT	./.
chr1	201915359	.	T	.	.	LowGQX	END=201915360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915361	.	C	.	.	LowGQX	.	GT	./.
chr1	201915362	.	A	.	.	LowGQX	END=201915365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915366	.	C	.	.	LowGQX	END=201915369	GT	./.
chr1	201915370	.	C	.	.	LowGQX	END=201915371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915372	.	C	.	.	LowGQX	END=201915373	GT	./.
chr1	201915374	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915375	.	G	.	.	LowGQX	END=201915377	GT	./.
chr1	201915378	.	C	.	.	LowGQX	END=201915379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915380	.	T	.	.	LowGQX	.	GT	./.
chr1	201915381	.	C	.	.	LowGQX	END=201915386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915387	.	C	.	.	LowGQX	END=201915388	GT	./.
chr1	201915389	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915390	.	C	.	.	LowGQX	END=201915392	GT	./.
chr1	201915393	.	G	.	.	LowGQX	END=201915420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201915421	.	G	.	.	LowGQX	END=201915468	GT	./.
chr1	201924618	.	C	.	.	LowGQX	END=201924717	GT	./.
chr1	201926407	.	A	.	.	LowGQX	END=201926447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	201926448	.	G	.	.	LowGQX	END=201926510	GT	./.
chr1	201926621	.	T	.	.	LowGQX	END=201926720	GT	./.
chr1	201932702	.	A	.	.	LowGQX	END=201932874	GT	./.
chr1	201934559	.	A	.	.	LowGQX	END=201934673	GT	./.
chr1	201938590	.	C	.	.	LowGQX	END=201938689	GT	./.
chr1	201951782	.	C	.	.	LowGQX	END=201952243	GT	./.
chr1	201952568	.	T	.	.	LowGQX	END=201952601	GT	./.
chr1	201952602	.	T	.	.	LowGQX	END=201952619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201952620	.	T	.	.	LowGQX	.	GT	./.
chr1	201952621	.	G	.	.	LowGQX	END=201952627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201952628	.	T	.	.	LowGQX	.	GT	./.
chr1	201952629	.	G	.	.	LowGQX	END=201952631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201952632	.	C	.	.	LowGQX	.	GT	./.
chr1	201952633	.	T	.	.	LowGQX	END=201952635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201952636	.	T	.	.	LowGQX	.	GT	./.
chr1	201952637	.	G	.	.	LowGQX	END=201952641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201952642	.	G	.	.	LowGQX	.	GT	./.
chr1	201952643	.	A	.	.	LowGQX	END=201952661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201952662	.	A	.	.	LowGQX	.	GT	./.
chr1	201952663	.	C	.	.	LowGQX	END=201952667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201958030	.	A	.	.	LowGQX	END=201958169	GT	./.
chr1	201958170	.	G	.	.	LowGQX	END=201958174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201958509	.	A	.	.	LowGQX	END=201958522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201958523	.	T	.	.	LowGQX	.	GT	./.
chr1	201958524	.	T	.	.	LowGQX	END=201958525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201958526	.	A	.	.	LowGQX	.	GT	./.
chr1	201958527	.	C	.	.	LowGQX	END=201958530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201958531	.	T	.	.	LowGQX	.	GT	./.
chr1	201958532	.	G	.	.	LowGQX	END=201958537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201958538	.	A	.	.	LowGQX	END=201958661	GT	./.
chr1	201965273	.	A	.	.	LowGQX	END=201965393	GT	./.
chr1	201966445	.	A	.	.	LowGQX	END=201966684	GT	./.
chr1	201969028	.	A	.	.	LowGQX	END=201969145	GT	./.
chr1	201970502	.	A	.	.	LowGQX	END=201970508	GT	./.
chr1	201970509	.	G	.	.	LowGQX	END=201970530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201970531	.	A	.	.	LowGQX	.	GT	./.
chr1	201970532	.	G	.	.	LowGQX	END=201970561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201970562	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	201970563	.	T	.	.	LowGQX	END=201970671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	201970785	.	A	.	.	LowGQX	END=201970897	GT	./.
chr1	201972363	.	A	.	.	LowGQX	END=201972591	GT	./.
chr1	201973480	.	A	.	.	LowGQX	END=201973626	GT	./.
chr1	201974684	.	A	.	.	LowGQX	END=201974846	GT	./.
chr1	201980242	.	T	.	.	LowGQX	END=201980429	GT	./.
chr1	201981083	.	A	.	.	LowGQX	END=201981308	GT	./.
chr1	201981469	.	C	.	.	LowGQX	END=201981568	GT	./.
chr1	201981766	.	A	.	.	LowGQX	END=201981889	GT	./.
chr1	201982070	.	C	.	.	LowGQX	END=201982169	GT	./.
chr1	201982308	.	A	.	.	LowGQX	END=201982428	GT	./.
chr1	201982955	.	A	.	.	LowGQX	END=201983154	GT	./.
chr1	201984335	.	A	.	.	LowGQX	END=201984453	GT	./.
chr1	202092090	.	C	.	.	LowGQX	END=202092106	GT	./.
chr1	202092107	.	C	.	.	LowGQX	END=202092158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202092159	.	C	.	.	LowGQX	.	GT	./.
chr1	202092160	.	T	.	.	LowGQX	END=202092175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202092176	.	C	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	202092177	.	A	.	.	LowGQX	END=202092257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202092258	.	T	.	.	LowGQX	.	GT	./.
chr1	202092259	.	G	.	.	LowGQX	END=202092265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202092266	.	T	.	.	LowGQX	.	GT	./.
chr1	202092267	.	A	.	.	LowGQX	END=202092280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202092281	.	T	.	.	LowGQX	.	GT	./.
chr1	202092282	.	G	.	.	LowGQX	END=202092333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202092334	.	C	.	.	LowGQX	END=202092641	GT	./.
chr1	202092642	.	T	.	.	LowGQX	END=202092723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202096867	.	A	.	.	LowGQX	END=202096920	GT	./.
chr1	202096921	.	G	.	.	LowGQX	END=202096961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202096962	.	A	.	.	LowGQX	.	GT	./.
chr1	202096963	.	T	.	.	LowGQX	END=202097137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202097138	.	A	.	.	LowGQX	END=202097162	GT	./.
chr1	202097163	.	C	.	.	LowGQX	END=202097166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202097167	.	T	.	.	LowGQX	.	GT	./.
chr1	202097168	.	G	.	.	LowGQX	END=202097175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202097176	.	A	.	.	LowGQX	.	GT	./.
chr1	202097177	.	C	.	.	LowGQX	END=202097179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202097180	.	T	.	.	LowGQX	.	GT	./.
chr1	202097181	.	G	.	.	LowGQX	END=202097192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202097193	.	T	.	.	LowGQX	.	GT	./.
chr1	202097194	.	G	.	.	LowGQX	END=202097212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202097213	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202097214	.	G	.	.	LowGQX	END=202097233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202097234	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202097235	.	T	.	.	LowGQX	END=202097236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202097237	.	G	.	.	LowGQX	.	GT	./.
chr1	202097238	.	C	.	.	LowGQX	END=202097251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202097252	.	T	.	.	LowGQX	.	GT	./.
chr1	202097253	.	C	.	.	LowGQX	END=202097258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202097259	.	A	.	.	LowGQX	.	GT	./.
chr1	202097260	.	G	.	.	LowGQX	END=202097318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202097319	.	G	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	202097320	.	T	.	.	LowGQX	END=202097479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202097480	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	202097481	.	C	.	.	LowGQX	END=202097686	GT	./.
chr1	202103570	.	G	.	.	LowGQX	END=202103669	GT	./.
chr1	202104264	.	C	.	.	LowGQX	END=202104363	GT	./.
chr1	202104571	.	G	.	.	LowGQX	END=202104670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202104832	.	G	.	.	LowGQX	END=202104931	GT	./.
chr1	202107080	.	C	.	.	LowGQX	END=202107179	GT	./.
chr1	202107487	.	G	.	.	LowGQX	END=202107586	GT	./.
chr1	202113576	.	A	.	.	LowGQX	END=202113745	GT	./.
chr1	202117731	.	G	.	.	LowGQX	END=202117830	GT	./.
chr1	202119402	.	T	.	.	LowGQX	END=202119554	GT	./.
chr1	202121666	.	G	.	.	LowGQX	END=202121697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202121698	.	G	.	.	LowGQX	END=202121829	GT	./.
chr1	202122851	.	A	.	.	LowGQX	END=202122898	GT	./.
chr1	202122899	.	T	.	.	LowGQX	END=202122900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202122901	.	C	.	.	LowGQX	.	GT	./.
chr1	202122902	.	T	.	.	LowGQX	END=202122965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202123281	.	G	.	.	LowGQX	END=202123397	GT	./.
chr1	202123398	.	G	.	.	LowGQX	END=202123428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202123429	.	A	.	.	LowGQX	.	GT	./.
chr1	202123430	.	C	.	.	LowGQX	END=202123453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202124650	.	A	.	.	LowGQX	END=202124656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202124657	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202124658	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202124659	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202124660	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202124661	.	T	.	.	LowGQX	END=202124663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202124664	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202124665	.	A	.	.	LowGQX	END=202124666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202124667	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202124668	.	T	.	.	LowGQX	END=202124670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202124671	.	T	.	.	LowGQX	.	GT	./.
chr1	202124672	.	T	.	.	LowGQX	END=202124674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202124675	.	C	.	.	LowGQX	.	GT	./.
chr1	202124676	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202124677	.	T	.	.	LowGQX	END=202124678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202124679	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202124680	.	A	.	.	LowGQX	END=202124689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202124690	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202124691	.	G	.	.	LowGQX	END=202124693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202124694	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202124695	.	T	.	.	LowGQX	END=202124702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202124703	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202124704	.	T	.	.	LowGQX	END=202124749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202126860	.	T	.	.	LowGQX	END=202126878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202126879	.	T	.	.	LowGQX	END=202126880	GT	./.
chr1	202126881	.	T	.	.	LowGQX	END=202126887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202126888	.	G	.	.	LowGQX	.	GT	./.
chr1	202126889	.	G	.	.	LowGQX	END=202126910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202126911	.	A	.	.	LowGQX	.	GT	./.
chr1	202126912	.	T	.	.	LowGQX	END=202126915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202126916	.	C	.	.	LowGQX	.	GT	./.
chr1	202126917	.	A	.	.	LowGQX	END=202126919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202126920	.	T	.	.	LowGQX	END=202126921	GT	./.
chr1	202126922	.	T	.	.	LowGQX	END=202126924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202126925	.	G	.	.	LowGQX	.	GT	./.
chr1	202126926	.	G	.	.	LowGQX	END=202126934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202126935	.	A	.	.	LowGQX	.	GT	./.
chr1	202126936	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202126937	.	G	.	.	LowGQX	.	GT	./.
chr1	202126938	.	T	.	.	LowGQX	END=202126941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202126942	.	A	.	.	LowGQX	.	GT	./.
chr1	202126943	.	A	.	.	LowGQX	END=202126946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202126947	.	A	.	.	LowGQX	.	GT	./.
chr1	202126948	.	T	.	.	LowGQX	END=202126949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202126950	.	T	.	.	LowGQX	END=202126951	GT	./.
chr1	202126952	.	C	.	.	LowGQX	END=202126956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202126957	.	A	.	.	LowGQX	.	GT	./.
chr1	202126958	.	G	.	.	LowGQX	END=202126959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202127244	.	A	.	.	LowGQX	END=202127248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202127249	.	G	.	.	LowGQX	.	GT	./.
chr1	202127250	.	A	.	.	LowGQX	END=202127253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202127254	.	C	.	.	LowGQX	.	GT	./.
chr1	202127255	.	T	.	.	LowGQX	END=202127258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202127259	.	T	.	.	LowGQX	END=202127261	GT	./.
chr1	202127262	.	A	.	.	LowGQX	END=202127266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202127267	.	C	.	.	LowGQX	.	GT	./.
chr1	202127268	.	T	.	.	LowGQX	END=202127276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202127277	.	G	.	.	LowGQX	END=202127278	GT	./.
chr1	202127279	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202127280	.	G	.	.	LowGQX	.	GT	./.
chr1	202127281	.	G	.	.	LowGQX	END=202127284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202127285	.	G	.	.	LowGQX	.	GT	./.
chr1	202127286	.	C	.	.	LowGQX	END=202127288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202127289	.	T	.	.	LowGQX	END=202127290	GT	./.
chr1	202127291	.	A	.	.	LowGQX	END=202127293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202127294	.	G	.	.	LowGQX	END=202127297	GT	./.
chr1	202127298	.	C	.	.	LowGQX	END=202127302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202127303	.	G	.	.	LowGQX	END=202127304	GT	./.
chr1	202127305	.	T	.	.	LowGQX	END=202127311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202127312	.	G	.	.	LowGQX	END=202127448	GT	./.
chr1	202128407	.	A	.	.	LowGQX	END=202128437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202128438	.	T	.	.	LowGQX	.	GT	./.
chr1	202128439	.	G	.	.	LowGQX	END=202128470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202128471	.	T	.	.	LowGQX	END=202128649	GT	./.
chr1	202129672	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202129673	.	T	.	.	LowGQX	END=202129935	GT	./.
chr1	202130514	.	C	.	.	LowGQX	END=202130536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202130537	.	C	.	.	LowGQX	END=202130709	GT	./.
chr1	202152730	.	G	.	.	LowGQX	END=202152818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202152819	.	T	.	.	LowGQX	.	GT	./.
chr1	202152820	.	C	.	.	LowGQX	END=202152829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202155389	.	G	.	.	LowGQX	END=202155557	GT	./.
chr1	202155661	.	T	.	.	LowGQX	END=202155850	GT	./.
chr1	202156102	.	T	.	.	LowGQX	END=202156170	GT	./.
chr1	202156171	.	G	.	.	LowGQX	END=202156201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202156608	.	C	.	.	LowGQX	END=202156627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202156628	.	A	C	44.20	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=22.10;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:75,6,0:60:6:1.000
chr1	202156629	.	C	.	.	LowGQX	END=202156646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202156647	.	T	.	.	LowGQX	.	GT	./.
chr1	202156648	.	G	.	.	LowGQX	END=202156678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202156679	.	A	.	.	LowGQX	END=202156707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	202156981	.	G	.	.	LowGQX	END=202157109	GT	./.
chr1	202157974	.	G	.	.	LowGQX	END=202157999	GT	./.
chr1	202158000	.	G	.	.	LowGQX	END=202158054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202158055	.	A	.	.	LowGQX	.	GT	./.
chr1	202158056	.	C	.	.	LowGQX	END=202158120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202158359	.	A	.	.	LowGQX	END=202158452	GT	./.
chr1	202158453	.	G	.	.	LowGQX	END=202158481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202163075	.	T	.	.	LowGQX	END=202163331	GT	./.
chr1	202163654	.	T	.	.	LowGQX	END=202163806	GT	./.
chr1	202166146	.	T	.	.	LowGQX	END=202166245	GT	./.
chr1	202166514	.	T	.	.	LowGQX	END=202166613	GT	./.
chr1	202172926	.	A	.	.	LowGQX	END=202173025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202183215	.	A	.	.	LowGQX	END=202183430	GT	./.
chr1	202194452	.	G	.	.	LowGQX	END=202194636	GT	./.
chr1	202197050	.	T	.	.	LowGQX	END=202197149	GT	./.
chr1	202205036	.	C	.	.	LowGQX	END=202205135	GT	./.
chr1	202245432	.	A	.	.	LowGQX	END=202245434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202245435	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202245436	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202245437	.	C	.	.	LowGQX	.	GT	./.
chr1	202245438	.	C	.	.	LowGQX	END=202245460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202245461	.	G	.	.	LowGQX	.	GT	./.
chr1	202245462	.	G	.	.	LowGQX	END=202245463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202245464	.	C	.	.	LowGQX	.	GT	./.
chr1	202245465	.	C	.	.	LowGQX	END=202245504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202245505	.	T	.	.	LowGQX	.	GT	./.
chr1	202245506	.	C	.	.	LowGQX	END=202245514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202245515	.	C	.	.	LowGQX	.	GT	./.
chr1	202245516	.	G	.	.	LowGQX	END=202245517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202245518	.	C	.	.	LowGQX	END=202245519	GT	./.
chr1	202245520	.	A	.	.	LowGQX	END=202245526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202245527	.	C	.	.	LowGQX	END=202245529	GT	./.
chr1	202245530	.	G	.	.	LowGQX	END=202245534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202245535	.	T	.	.	LowGQX	.	GT	./.
chr1	202245536	.	C	.	.	LowGQX	END=202245543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202245544	.	G	.	.	LowGQX	.	GT	./.
chr1	202245545	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202245546	.	G	.	.	LowGQX	.	GT	./.
chr1	202245547	.	C	.	.	LowGQX	END=202245550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202245551	.	C	.	.	LowGQX	.	GT	./.
chr1	202245552	.	A	.	.	LowGQX	END=202245558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202245559	.	T	.	.	LowGQX	.	GT	./.
chr1	202245560	.	C	.	.	LowGQX	END=202245561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202245562	.	C	.	.	LowGQX	.	GT	./.
chr1	202245563	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202245564	.	G	.	.	LowGQX	.	GT	./.
chr1	202245565	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202245566	.	C	.	.	LowGQX	.	GT	./.
chr1	202245567	.	C	.	.	LowGQX	END=202245568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202245569	.	G	.	.	LowGQX	.	GT	./.
chr1	202245570	.	C	.	.	LowGQX	END=202245577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202245578	.	G	.	.	LowGQX	.	GT	./.
chr1	202245579	.	A	.	.	LowGQX	END=202245580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202245581	.	C	.	.	LowGQX	END=202245651	GT	./.
chr1	202249836	.	A	.	.	LowGQX	END=202249994	GT	./.
chr1	202266621	.	T	.	.	LowGQX	END=202266711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202266712	.	C	.	.	LowGQX	END=202266720	GT	./.
chr1	202269963	.	G	.	.	LowGQX	END=202270054	GT	./.
chr1	202270055	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202270056	.	C	.	.	LowGQX	.	GT	./.
chr1	202270057	.	T	.	.	LowGQX	END=202270062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202270278	.	C	.	.	LowGQX	END=202270309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202270310	.	A	.	.	LowGQX	.	GT	./.
chr1	202270311	.	A	.	.	LowGQX	END=202270312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202270313	.	C	.	.	LowGQX	END=202270315	GT	./.
chr1	202270316	.	G	.	.	LowGQX	END=202270321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202270322	.	G	.	.	LowGQX	END=202270323	GT	./.
chr1	202270324	.	G	.	.	LowGQX	END=202270330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202270331	.	G	.	.	LowGQX	.	GT	./.
chr1	202270332	.	G	.	.	LowGQX	END=202270355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202270356	.	C	.	.	LowGQX	.	GT	./.
chr1	202270357	.	A	.	.	LowGQX	END=202270368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202270369	.	T	.	.	LowGQX	.	GT	./.
chr1	202270370	.	T	.	.	LowGQX	END=202270374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202270375	.	C	.	.	LowGQX	.	GT	./.
chr1	202270376	.	C	.	.	LowGQX	END=202270377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202272392	.	T	.	.	LowGQX	END=202272491	GT	./.
chr1	202273673	.	T	.	.	LowGQX	END=202273696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202273697	.	C	.	.	LowGQX	END=202273772	GT	./.
chr1	202274795	.	C	.	.	LowGQX	END=202274894	GT	./.
chr1	202275823	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202275824	.	A	.	.	LowGQX	.	GT	./.
chr1	202275825	.	C	.	.	LowGQX	END=202275869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202275870	.	T	.	.	LowGQX	.	GT	./.
chr1	202275871	.	G	.	.	LowGQX	END=202275872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202275873	.	G	.	.	LowGQX	.	GT	./.
chr1	202275874	.	C	.	.	LowGQX	END=202275878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202275879	.	T	.	.	LowGQX	.	GT	./.
chr1	202275880	.	C	.	.	LowGQX	END=202275906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202275907	.	T	.	.	LowGQX	.	GT	./.
chr1	202275908	.	C	.	.	LowGQX	END=202275925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202275926	.	T	.	.	LowGQX	.	GT	./.
chr1	202275927	.	G	.	.	LowGQX	END=202275944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202275945	.	G	.	.	LowGQX	.	GT	./.
chr1	202275946	.	G	.	.	LowGQX	END=202275954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202275955	.	T	.	.	LowGQX	END=202275974	GT	./.
chr1	202275982	.	T	.	.	LowGQX	END=202276081	GT	./.
chr1	202276444	.	C	.	.	LowGQX	END=202276501	GT	./.
chr1	202276502	.	T	.	.	LowGQX	END=202276543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202278177	.	A	.	.	LowGQX	END=202278274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202278275	.	C	.	.	LowGQX	END=202278306	GT	./.
chr1	202279323	.	A	.	.	LowGQX	END=202279351	GT	./.
chr1	202279352	.	G	.	.	LowGQX	END=202279362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202279363	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202279364	.	T	.	.	LowGQX	END=202279377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202279378	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202279379	.	C	.	.	LowGQX	END=202279381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202279382	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202279383	.	T	.	.	LowGQX	END=202279389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202279390	.	C	.	.	LowGQX	.	GT	./.
chr1	202279391	.	C	.	.	LowGQX	END=202279397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202279398	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202279399	.	A	.	.	LowGQX	END=202279487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202283921	.	T	.	.	LowGQX	END=202283952	GT	./.
chr1	202283953	.	C	.	.	LowGQX	END=202284020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287078	.	A	.	.	LowGQX	END=202287726	GT	./.
chr1	202287727	.	G	.	.	LowGQX	END=202287786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287787	.	T	.	.	LowGQX	.	GT	./.
chr1	202287788	.	A	.	.	LowGQX	END=202287807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287808	.	A	.	.	LowGQX	END=202287809	GT	./.
chr1	202287810	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287811	.	T	.	.	LowGQX	.	GT	./.
chr1	202287812	.	T	.	.	LowGQX	END=202287813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287814	.	G	.	.	LowGQX	.	GT	./.
chr1	202287815	.	C	.	.	LowGQX	END=202287816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287817	.	T	.	.	LowGQX	.	GT	./.
chr1	202287818	.	C	.	.	LowGQX	END=202287827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202287828	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202287829	.	C	.	.	LowGQX	END=202287834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202287835	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202287836	.	C	.	.	LowGQX	END=202287844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202287845	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202287846	.	C	.	.	LowGQX	END=202287847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202287848	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202287849	.	G	.	.	LowGQX	END=202287876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202287877	.	C	.	.	LowGQX	.	GT	./.
chr1	202287878	.	T	.	.	LowGQX	END=202287880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287881	.	C	.	.	LowGQX	END=202287882	GT	./.
chr1	202287883	.	C	.	.	LowGQX	END=202287885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287886	.	C	.	.	LowGQX	.	GT	./.
chr1	202287887	.	C	.	.	LowGQX	END=202287893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287894	.	C	.	.	LowGQX	.	GT	./.
chr1	202287895	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287896	.	T	.	.	LowGQX	.	GT	./.
chr1	202287897	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287898	.	A	.	.	LowGQX	.	GT	./.
chr1	202287899	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287900	.	C	.	.	LowGQX	.	GT	./.
chr1	202287901	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287902	.	C	.	.	LowGQX	.	GT	./.
chr1	202287903	.	A	.	.	LowGQX	END=202287904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287905	.	T	.	.	LowGQX	.	GT	./.
chr1	202287906	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287907	.	C	.	.	LowGQX	.	GT	./.
chr1	202287908	.	T	.	.	LowGQX	END=202287911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287912	.	C	.	.	LowGQX	END=202287913	GT	./.
chr1	202287914	.	T	.	.	LowGQX	END=202287916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287917	.	T	.	.	LowGQX	.	GT	./.
chr1	202287918	.	C	.	.	LowGQX	END=202287922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287923	.	A	.	.	LowGQX	.	GT	./.
chr1	202287924	.	C	.	.	LowGQX	END=202287926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287927	.	C	.	.	LowGQX	.	GT	./.
chr1	202287928	.	C	.	.	LowGQX	END=202287949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287950	.	G	.	.	LowGQX	END=202287951	GT	./.
chr1	202287952	.	C	.	.	LowGQX	END=202287953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287954	.	T	.	.	LowGQX	.	GT	./.
chr1	202287955	.	C	.	.	LowGQX	END=202287965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202287966	.	A	.	.	LowGQX	END=202288337	GT	./.
chr1	202300961	.	C	.	.	LowGQX	END=202301090	GT	./.
chr1	202302130	.	C	.	.	LowGQX	END=202302167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202302168	.	C	.	.	LowGQX	.	GT	./.
chr1	202302169	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202302170	.	A	.	.	LowGQX	.	GT	./.
chr1	202302171	.	C	.	.	LowGQX	END=202302204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202302205	.	T	.	.	LowGQX	END=202302206	GT	./.
chr1	202302207	.	T	.	.	LowGQX	END=202302210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202302211	.	A	.	.	LowGQX	END=202302212	GT	./.
chr1	202302213	.	T	.	.	LowGQX	END=202302221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202302222	.	C	.	.	LowGQX	END=202302229	GT	./.
chr1	202302363	.	A	.	.	LowGQX	END=202302376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202302377	.	G	.	.	LowGQX	.	GT	./.
chr1	202302378	.	A	.	.	LowGQX	END=202302383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202302384	.	T	.	.	LowGQX	.	GT	./.
chr1	202302385	.	C	.	.	LowGQX	END=202302390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202302391	.	G	.	.	LowGQX	.	GT	./.
chr1	202302392	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202302393	.	T	.	.	LowGQX	.	GT	./.
chr1	202302394	.	T	.	.	LowGQX	END=202302395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202302396	.	G	.	.	LowGQX	.	GT	./.
chr1	202302397	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202302398	.	T	.	.	LowGQX	END=202302426	GT	./.
chr1	202302427	.	A	.	.	LowGQX	END=202302463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202302464	.	C	.	.	LowGQX	.	GT	./.
chr1	202302465	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202302576	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202302577	.	C	.	.	LowGQX	END=202302685	GT	./.
chr1	202304102	.	C	.	.	LowGQX	END=202304184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202304185	.	T	.	.	LowGQX	.	GT	./.
chr1	202304186	.	T	.	.	LowGQX	END=202304201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202304772	.	A	.	.	LowGQX	END=202304850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202304851	.	A	.	.	LowGQX	END=202304884	GT	./.
chr1	202317971	.	G	.	.	LowGQX	END=202318277	GT	./.
chr1	202385913	.	A	.	.	LowGQX	END=202386047	GT	./.
chr1	202391746	.	A	.	.	LowGQX	END=202391868	GT	./.
chr1	202394692	.	A	.	.	LowGQX	END=202394855	GT	./.
chr1	202396166	.	A	.	.	LowGQX	END=202396311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202396312	.	G	.	.	LowGQX	END=202396355	GT	./.
chr1	202397911	.	T	.	.	LowGQX	END=202398070	GT	./.
chr1	202399849	.	C	.	.	LowGQX	END=202399944	GT	./.
chr1	202399945	.	C	.	.	LowGQX	END=202399948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202400606	.	A	.	.	LowGQX	END=202400749	GT	./.
chr1	202403782	.	A	.	.	LowGQX	END=202403811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202403812	.	T	.	.	LowGQX	.	GT	./.
chr1	202403813	.	T	.	.	LowGQX	END=202403822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202403823	.	A	.	.	LowGQX	.	GT	./.
chr1	202403824	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202403825	.	A	.	.	LowGQX	.	GT	./.
chr1	202403826	.	G	.	.	LowGQX	END=202403835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202403836	.	T	.	.	LowGQX	.	GT	./.
chr1	202403837	.	A	.	.	LowGQX	END=202403838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202403839	.	C	.	.	LowGQX	END=202403933	GT	./.
chr1	202403934	.	C	.	.	LowGQX	END=202403941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202406947	.	A	.	.	LowGQX	END=202407040	GT	./.
chr1	202407041	.	C	.	.	LowGQX	END=202407176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202407177	.	A	.	.	LowGQX	END=202407242	GT	./.
chr1	202407338	.	A	.	.	LowGQX	END=202407437	GT	./.
chr1	202409826	.	T	.	.	LowGQX	END=202409925	GT	./.
chr1	202411573	.	A	.	.	LowGQX	END=202411628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202411629	.	G	.	.	LowGQX	END=202411702	GT	./.
chr1	202418115	.	A	.	.	LowGQX	END=202418301	GT	./.
chr1	202443020	.	T	.	.	LowGQX	END=202443085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202443086	.	G	.	.	LowGQX	.	GT	./.
chr1	202443087	.	C	.	.	LowGQX	END=202443088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202443089	.	T	.	.	LowGQX	END=202443119	GT	./.
chr1	202457657	.	G	.	.	LowGQX	END=202457743	GT	./.
chr1	202457744	.	C	.	.	LowGQX	END=202457756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202462240	.	A	.	.	LowGQX	END=202462447	GT	./.
chr1	202464419	.	A	.	.	LowGQX	END=202464612	GT	./.
chr1	202464696	.	A	.	.	LowGQX	END=202464812	GT	./.
chr1	202465880	.	T	.	.	LowGQX	END=202465979	GT	./.
chr1	202509267	.	C	.	.	LowGQX	END=202509369	GT	./.
chr1	202527964	.	T	.	.	LowGQX	END=202528063	GT	./.
chr1	202531710	.	T	.	.	LowGQX	END=202531754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202531755	.	A	.	.	LowGQX	END=202531809	GT	./.
chr1	202531903	.	C	.	.	LowGQX	END=202532052	GT	./.
chr1	202533569	.	A	.	.	LowGQX	END=202533677	GT	./.
chr1	202536883	.	T	.	.	LowGQX	END=202536982	GT	./.
chr1	202538251	.	A	.	.	LowGQX	END=202538350	GT	./.
chr1	202544128	.	A	.	.	LowGQX	END=202544266	GT	./.
chr1	202549596	.	C	.	.	LowGQX	END=202549666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202549667	.	C	.	.	LowGQX	END=202549695	GT	./.
chr1	202565883	.	G	.	.	PASS	END=202565902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	202565903	.	G	.	.	PASS	END=202565940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	202565941	.	A	.	.	PASS	END=202565947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	202565948	.	G	A	5426.24	PASS	DP=188;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=7.5754;MQ=60;MQ0=0;QD=28.86;SB=-2777.91	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,188:188:99:5426,400,0:60:99:1.000
chr1	202565949	.	A	.	.	PASS	END=202566050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	202566051	.	A	.	.	PASS	END=202566074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	202566075	.	A	.	.	PASS	END=202566093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	202568304	.	C	.	.	PASS	END=202568309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	202568310	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:36:60
chr1	202568311	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:84:60
chr1	202568312	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:45:60
chr1	202568313	.	T	.	.	PASS	END=202568328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	202568329	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:66:60
chr1	202568330	.	C	.	.	PASS	END=202568344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	202568345	.	C	.	.	PASS	END=202568384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	202568385	.	G	.	.	PASS	END=202568434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	202568435	.	T	.	.	PASS	END=202568481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:93:60
chr1	202569483	.	A	.	.	PASS	END=202569570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	202569571	.	A	.	.	PASS	END=202569580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	202569581	.	A	.	.	PASS	END=202569603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	202569604	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:127:99:60
chr1	202571016	.	A	.	.	PASS	END=202571071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	202571072	.	G	.	.	PASS	END=202571178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	202571179	.	A	.	.	PASS	END=202571187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	202571504	.	A	.	.	PASS	END=202571563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	202571564	.	T	.	.	PASS	END=202571632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	202571633	.	A	.	.	PASS	END=202571658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	202571659	.	A	.	.	PASS	END=202571675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	202572125	.	A	.	.	PASS	END=202572155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	202572156	.	A	.	.	PASS	END=202572242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	202572243	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:73:60
chr1	202572244	.	A	.	.	PASS	END=202572248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	202573581	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:51:60
chr1	202573582	.	C	.	.	PASS	END=202573584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	202573585	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:93:60
chr1	202573586	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:42:60
chr1	202573587	.	C	.	.	PASS	END=202573588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	202573589	.	C	.	.	PASS	END=202573593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	202573594	.	T	.	.	PASS	END=202573603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	202573604	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:58:60
chr1	202573605	.	A	.	.	PASS	END=202573656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	202573657	.	T	.	.	PASS	END=202573724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:79:60
chr1	202573725	.	A	.	.	PASS	END=202573747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	202573748	.	T	.	.	PASS	END=202573751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	202574721	.	A	.	.	PASS	END=202574785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	202574786	.	T	.	.	PASS	END=202574867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	202574868	.	A	.	.	PASS	END=202574902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	202698162	.	T	.	.	LowGQX	END=202698303	GT	./.
chr1	202698833	.	A	.	.	LowGQX	END=202699157	GT	./.
chr1	202700035	.	A	.	.	LowGQX	END=202700083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202700084	.	C	.	.	LowGQX	END=202700193	GT	./.
chr1	202700902	.	A	.	.	LowGQX	END=202701113	GT	./.
chr1	202702527	.	A	.	.	LowGQX	END=202703016	GT	./.
chr1	202704555	.	A	.	.	LowGQX	END=202704717	GT	./.
chr1	202705339	.	A	.	.	LowGQX	END=202705351	GT	./.
chr1	202705352	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705353	.	A	.	.	LowGQX	.	GT	./.
chr1	202705354	.	T	.	.	LowGQX	END=202705355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705356	.	T	.	.	LowGQX	.	GT	./.
chr1	202705357	.	G	.	.	LowGQX	END=202705360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705361	.	A	.	.	LowGQX	END=202705362	GT	./.
chr1	202705363	.	T	.	.	LowGQX	END=202705378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705379	.	T	.	.	LowGQX	END=202705380	GT	./.
chr1	202705381	.	T	.	.	LowGQX	END=202705391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705392	.	T	.	.	LowGQX	.	GT	./.
chr1	202705393	.	T	.	.	LowGQX	END=202705394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705395	.	T	.	.	LowGQX	END=202705396	GT	./.
chr1	202705397	.	T	.	.	LowGQX	END=202705399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705400	.	A	.	.	LowGQX	.	GT	./.
chr1	202705401	.	A	.	.	LowGQX	END=202705405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705406	.	G	.	.	LowGQX	.	GT	./.
chr1	202705407	.	A	.	.	LowGQX	END=202705418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705419	.	T	.	.	LowGQX	.	GT	./.
chr1	202705420	.	A	.	.	LowGQX	END=202705434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705435	.	G	.	.	LowGQX	.	GT	./.
chr1	202705436	.	G	.	.	LowGQX	END=202705444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705445	.	T	.	.	LowGQX	END=202705446	GT	./.
chr1	202705447	.	A	.	.	LowGQX	END=202705449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705450	.	T	.	.	LowGQX	.	GT	./.
chr1	202705451	.	G	.	.	LowGQX	END=202705454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705455	.	G	.	.	LowGQX	END=202705456	GT	./.
chr1	202705457	.	G	.	.	LowGQX	END=202705459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705460	.	T	.	.	LowGQX	.	GT	./.
chr1	202705461	.	A	.	.	LowGQX	END=202705465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705466	.	G	.	.	LowGQX	.	GT	./.
chr1	202705467	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705468	.	C	.	.	LowGQX	.	GT	./.
chr1	202705469	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705470	.	T	.	.	LowGQX	.	GT	./.
chr1	202705471	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705472	.	G	.	.	LowGQX	.	GT	./.
chr1	202705473	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705474	.	G	.	.	LowGQX	.	GT	./.
chr1	202705475	.	T	.	.	LowGQX	END=202705477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705478	.	C	.	.	LowGQX	.	GT	./.
chr1	202705479	.	A	.	.	LowGQX	END=202705482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705483	.	T	.	.	LowGQX	.	GT	./.
chr1	202705484	.	C	.	.	LowGQX	END=202705488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705489	.	A	.	.	LowGQX	.	GT	./.
chr1	202705490	.	G	.	.	LowGQX	END=202705492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705493	.	T	.	.	LowGQX	END=202705495	GT	./.
chr1	202705496	.	C	.	.	LowGQX	END=202705498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705499	.	A	.	.	LowGQX	.	GT	./.
chr1	202705500	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202705501	.	A	.	.	LowGQX	END=202705522	GT	./.
chr1	202709800	.	A	.	.	LowGQX	END=202709942	GT	./.
chr1	202710493	.	A	.	.	LowGQX	END=202710852	GT	./.
chr1	202711517	.	A	.	.	LowGQX	END=202711586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202711587	.	C	.	.	LowGQX	END=202711635	GT	./.
chr1	202711781	.	A	.	.	LowGQX	END=202711935	GT	./.
chr1	202714984	.	A	.	.	LowGQX	END=202715112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202715268	.	A	.	.	LowGQX	END=202715323	GT	./.
chr1	202715324	.	C	.	.	LowGQX	END=202715328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202715329	.	A	.	.	LowGQX	.	GT	./.
chr1	202715330	.	A	.	.	LowGQX	END=202715332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202715333	.	A	.	.	LowGQX	.	GT	./.
chr1	202715334	.	G	.	.	LowGQX	END=202715336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202715337	.	C	.	.	LowGQX	END=202715339	GT	./.
chr1	202715340	.	G	.	.	LowGQX	END=202715357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202715358	.	T	.	.	LowGQX	.	GT	./.
chr1	202715359	.	G	.	.	LowGQX	END=202715387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202715388	.	T	.	.	LowGQX	.	GT	./.
chr1	202715389	.	T	.	.	LowGQX	END=202715445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202715446	.	C	.	.	LowGQX	.	GT	./.
chr1	202715447	.	A	.	.	LowGQX	END=202715453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202718071	.	A	.	.	LowGQX	END=202718249	GT	./.
chr1	202718250	.	C	.	.	LowGQX	END=202718255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202718256	.	G	.	.	LowGQX	END=202718262	GT	./.
chr1	202718263	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202718264	.	G	.	.	LowGQX	END=202718265	GT	./.
chr1	202718266	.	A	.	.	LowGQX	END=202718268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202718269	.	T	.	.	LowGQX	.	GT	./.
chr1	202719785	.	A	.	.	LowGQX	END=202719908	GT	./.
chr1	202722031	.	A	.	.	LowGQX	END=202722033	GT	./.
chr1	202722034	.	G	.	.	LowGQX	END=202722036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722037	.	A	.	.	LowGQX	END=202722038	GT	./.
chr1	202722039	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722040	.	T	.	.	LowGQX	.	GT	./.
chr1	202722041	.	C	.	.	LowGQX	END=202722044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722045	.	A	.	.	LowGQX	.	GT	./.
chr1	202722046	.	G	.	.	LowGQX	END=202722047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722048	.	C	.	.	LowGQX	.	GT	./.
chr1	202722049	.	A	.	.	LowGQX	END=202722053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722054	.	G	.	.	LowGQX	.	GT	./.
chr1	202722055	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722056	.	T	.	.	LowGQX	.	GT	./.
chr1	202722057	.	A	.	.	LowGQX	END=202722061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722062	.	G	.	.	LowGQX	.	GT	./.
chr1	202722063	.	G	.	.	LowGQX	END=202722067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722068	.	T	.	.	LowGQX	.	GT	./.
chr1	202722069	.	G	.	.	LowGQX	END=202722072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722073	.	G	.	.	LowGQX	END=202722075	GT	./.
chr1	202722076	.	A	.	.	LowGQX	END=202722079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722080	.	G	.	.	LowGQX	.	GT	./.
chr1	202722081	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722082	.	T	.	.	LowGQX	.	GT	./.
chr1	202722083	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722084	.	A	.	.	LowGQX	.	GT	./.
chr1	202722085	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722086	.	G	.	.	LowGQX	.	GT	./.
chr1	202722087	.	G	.	.	LowGQX	END=202722089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722090	.	G	.	.	LowGQX	.	GT	./.
chr1	202722091	.	A	.	.	LowGQX	END=202722092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722093	.	A	.	.	LowGQX	.	GT	./.
chr1	202722094	.	T	.	.	LowGQX	END=202722095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722096	.	C	.	.	LowGQX	.	GT	./.
chr1	202722097	.	G	.	.	LowGQX	END=202722101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722102	.	G	.	.	LowGQX	.	GT	./.
chr1	202722103	.	G	.	.	LowGQX	END=202722105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722106	.	A	.	.	LowGQX	.	GT	./.
chr1	202722107	.	C	.	.	LowGQX	END=202722114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722115	.	T	.	.	LowGQX	.	GT	./.
chr1	202722116	.	C	.	.	LowGQX	END=202722124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722125	.	G	.	.	LowGQX	.	GT	./.
chr1	202722126	.	T	.	.	LowGQX	END=202722129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722130	.	T	.	.	LowGQX	END=202722131	GT	./.
chr1	202722132	.	C	.	.	LowGQX	END=202722134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722135	.	T	.	.	LowGQX	END=202722136	GT	./.
chr1	202722137	.	C	.	.	LowGQX	END=202722143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722144	.	T	.	.	LowGQX	.	GT	./.
chr1	202722145	.	A	.	.	LowGQX	END=202722152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722153	.	A	.	.	LowGQX	.	GT	./.
chr1	202722154	.	G	.	.	LowGQX	END=202722157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202722158	.	C	.	.	LowGQX	END=202722197	GT	./.
chr1	202724397	.	A	.	.	LowGQX	END=202724430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202724431	.	G	.	.	LowGQX	END=202724582	GT	./.
chr1	202725484	.	A	.	.	LowGQX	END=202725496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202725497	.	G	.	.	LowGQX	END=202725646	GT	./.
chr1	202727517	.	A	.	.	LowGQX	END=202727555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202727556	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	202727557	.	C	.	.	LowGQX	END=202727640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202729501	.	T	.	.	LowGQX	.	GT	./.
chr1	202729502	.	A	.	.	LowGQX	END=202729503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202729504	.	A	.	.	LowGQX	.	GT	./.
chr1	202729505	.	A	.	.	LowGQX	END=202729507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202729508	.	A	.	.	LowGQX	.	GT	./.
chr1	202729509	.	T	.	.	LowGQX	END=202729512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202729513	.	T	.	.	LowGQX	END=202729582	GT	./.
chr1	202729583	.	A	.	.	LowGQX	END=202729654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202729655	.	T	.	.	LowGQX	.	GT	./.
chr1	202729656	.	C	.	.	LowGQX	END=202729660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202729661	.	T	.	.	LowGQX	.	GT	./.
chr1	202729662	.	C	.	.	LowGQX	END=202729703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202731825	.	A	.	.	LowGQX	END=202731938	GT	./.
chr1	202733125	.	T	.	.	LowGQX	END=202733237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202733238	.	C	T	47.39	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=23.69;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:79,6,0:60:6:1.000
chr1	202733239	.	G	.	.	LowGQX	END=202733265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202733266	.	T	.	.	LowGQX	END=202733275	GT	./.
chr1	202735524	.	C	.	.	LowGQX	END=202735682	GT	./.
chr1	202736052	.	A	.	.	LowGQX	END=202736231	GT	./.
chr1	202742244	.	A	.	.	LowGQX	END=202742377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202742378	.	C	.	.	LowGQX	END=202742418	GT	./.
chr1	202743739	.	A	.	.	LowGQX	END=202743908	GT	./.
chr1	202746134	.	G	.	.	LowGQX	END=202746178	GT	./.
chr1	202746179	.	A	.	.	LowGQX	END=202746233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202777228	.	A	.	.	LowGQX	END=202777435	GT	./.
chr1	202777721	.	C	.	.	LowGQX	END=202777843	GT	./.
chr1	202794634	.	C	.	.	LowGQX	END=202794672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202794673	.	A	.	.	LowGQX	.	GT	./.
chr1	202794674	.	A	.	.	LowGQX	END=202794706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202794707	.	G	.	.	LowGQX	.	GT	./.
chr1	202794708	.	T	.	.	LowGQX	END=202794722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202794723	.	C	A	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	202794724	.	A	.	.	LowGQX	END=202794777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202794778	.	G	.	.	LowGQX	.	GT	./.
chr1	202794779	.	G	.	.	LowGQX	END=202794786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202794787	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	202794788	.	G	.	.	LowGQX	END=202794859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202794860	.	C	.	.	LowGQX	END=202795252	GT	./.
chr1	202827234	.	G	.	.	LowGQX	END=202827333	GT	./.
chr1	202828010	.	C	.	.	PASS	END=202828014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	202828015	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:36:60
chr1	202828016	.	C	.	.	PASS	END=202828026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	202828027	.	A	.	.	PASS	END=202828031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	202828032	.	C	.	.	PASS	END=202828039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	202828040	.	G	.	.	PASS	END=202828042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	202828043	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:9:60
chr1	202828044	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:36:60
chr1	202828045	.	G	.	.	PASS	END=202828053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	202828054	.	C	.	.	PASS	END=202828072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	202828073	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:18:60
chr1	202828074	.	T	.	.	PASS	END=202828086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	202828087	.	G	.	.	PASS	END=202828107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	202828108	.	C	.	.	PASS	END=202828188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	202828189	.	C	.	.	PASS	END=202828199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	202828200	.	C	.	.	PASS	END=202828224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	202828225	.	C	A	3.26	LowGQX;LowQD;SB	BaseQRankSum=0.779;DP=21;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=-0.659;QD=0.16;ReadPosRankSum=-1.138;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:19,2:21:30.48:30,0,504:60:3:0.095
chr1	202828226	.	T	.	.	PASS	END=202828230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	202830552	.	C	.	.	LowGQX	END=202830651	GT	./.
chr1	202850104	.	A	.	.	LowGQX	END=202850217	GT	./.
chr1	202850218	.	C	.	.	LowGQX	END=202850321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202850322	.	T	.	.	LowGQX	END=202850353	GT	./.
chr1	202858099	.	A	.	.	LowGQX	END=202858228	GT	./.
chr1	202861659	.	G	.	.	LowGQX	END=202861789	GT	./.
chr1	202862365	.	A	.	.	LowGQX	END=202862425	GT	./.
chr1	202862426	.	G	.	.	LowGQX	END=202862465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202862466	.	T	.	.	LowGQX	.	GT	./.
chr1	202862467	.	T	.	.	LowGQX	END=202862496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202862497	.	T	.	.	LowGQX	.	GT	./.
chr1	202862498	.	A	.	.	LowGQX	END=202862504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202862505	.	A	.	.	LowGQX	.	GT	./.
chr1	202862506	.	A	.	.	LowGQX	END=202862516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202862517	.	A	.	.	LowGQX	.	GT	./.
chr1	202862518	.	C	.	.	LowGQX	END=202862519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202862520	.	T	.	.	LowGQX	.	GT	./.
chr1	202862521	.	A	.	.	LowGQX	END=202862551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202862552	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202862553	.	C	.	.	LowGQX	END=202862555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202863310	.	A	.	.	LowGQX	END=202863412	GT	./.
chr1	202863717	.	A	.	.	LowGQX	END=202863879	GT	./.
chr1	202864648	.	A	.	.	LowGQX	END=202864847	GT	./.
chr1	202865980	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	202865981	.	C	.	.	LowGQX	END=202866050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202866051	.	T	.	.	LowGQX	END=202866090	GT	./.
chr1	202878136	.	A	.	.	LowGQX	END=202878254	GT	./.
chr1	202880180	.	A	.	.	LowGQX	END=202880333	GT	./.
chr1	202887297	.	A	.	.	LowGQX	END=202887518	GT	./.
chr1	202888881	.	A	.	.	LowGQX	END=202888905	GT	./.
chr1	202888906	.	G	.	.	LowGQX	END=202888938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202888939	.	A	.	.	LowGQX	.	GT	./.
chr1	202888940	.	C	.	.	LowGQX	END=202888969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202888970	.	A	.	.	LowGQX	.	GT	./.
chr1	202888971	.	T	.	.	LowGQX	END=202888983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202888984	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	202888985	.	T	.	.	LowGQX	END=202888996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202888997	.	A	.	.	LowGQX	.	GT	./.
chr1	202888998	.	A	.	.	LowGQX	END=202889055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202889056	.	A	.	.	LowGQX	END=202889070	GT	./.
chr1	202894094	.	A	.	.	LowGQX	END=202894169	GT	./.
chr1	202894170	.	G	.	.	LowGQX	END=202894283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202894284	.	C	.	.	LowGQX	END=202894335	GT	./.
chr1	202897593	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202897594	.	G	.	.	LowGQX	END=202897610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202897611	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202897612	.	C	.	.	LowGQX	END=202897614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202897615	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	202897616	.	G	.	.	LowGQX	END=202897692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202910699	.	G	.	.	PASS	END=202910716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	202910717	.	T	.	.	PASS	END=202910765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	202910766	.	C	.	.	PASS	END=202910830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	202910831	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:71:99:60
chr1	202911151	.	A	.	.	PASS	END=202911258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	202911259	.	C	.	.	PASS	END=202911308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	202911309	.	G	.	.	PASS	END=202911330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	202911331	.	A	.	.	PASS	END=202911346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	202911347	.	C	.	.	PASS	END=202911348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	202912884	.	A	.	.	PASS	END=202912903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	202912904	.	G	.	.	PASS	END=202912931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	202912932	.	C	.	.	PASS	END=202913035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	202913036	.	T	.	.	PASS	END=202913075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	202914109	.	A	.	.	PASS	END=202914142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	202914143	.	A	.	.	PASS	END=202914271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	202914272	.	T	.	.	PASS	END=202914299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	202915565	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	202915566	.	C	.	.	PASS	END=202915567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	202915568	.	A	.	.	PASS	END=202915576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	202915577	.	G	.	.	PASS	END=202915593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	202915594	.	T	.	.	PASS	END=202915597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	202915598	.	T	.	.	PASS	END=202915626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	202915627	.	A	.	.	PASS	END=202915652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	202915653	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:30:60
chr1	202915654	.	T	.	.	PASS	END=202915679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	202915680	.	T	.	.	PASS	END=202915702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr1	202915703	.	A	.	.	PASS	END=202915725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	202915726	.	G	.	.	PASS	END=202915735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	202915736	.	G	.	.	PASS	END=202915739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	202915740	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:60:60
chr1	202917430	.	A	.	.	PASS	END=202917466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	202917467	.	G	.	.	PASS	END=202917608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	202920056	.	A	.	.	PASS	END=202920109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	202920110	.	A	.	.	PASS	END=202920177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	202920178	.	A	.	.	PASS	END=202920200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	202931653	.	G	.	.	LowGQX	END=202931719	GT	./.
chr1	202931720	.	G	.	.	LowGQX	END=202931802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202931803	.	A	.	.	LowGQX	.	GT	./.
chr1	202931804	.	C	.	.	LowGQX	END=202931823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202931824	.	C	.	.	LowGQX	.	GT	./.
chr1	202931825	.	A	.	.	LowGQX	END=202931833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202931834	.	T	.	.	LowGQX	.	GT	./.
chr1	202931835	.	A	.	.	LowGQX	END=202931845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202931846	.	A	.	.	LowGQX	.	GT	./.
chr1	202931847	.	A	.	.	LowGQX	END=202931864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202931865	.	A	.	.	LowGQX	.	GT	./.
chr1	202931866	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202931867	.	A	.	.	LowGQX	.	GT	./.
chr1	202931868	.	C	.	.	LowGQX	END=202931870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202931871	.	G	.	.	LowGQX	END=202931882	GT	./.
chr1	202932057	.	C	.	.	LowGQX	END=202932132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202932133	.	G	.	.	LowGQX	END=202932295	GT	./.
chr1	202932763	.	A	.	.	LowGQX	END=202932862	GT	./.
chr1	202933732	.	T	.	.	LowGQX	END=202933736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202933737	.	C	.	.	LowGQX	END=202933831	GT	./.
chr1	202934497	.	A	.	.	LowGQX	END=202934630	GT	./.
chr1	202935013	.	A	.	.	LowGQX	END=202935014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202935015	.	C	.	.	LowGQX	.	GT	./.
chr1	202935016	.	T	.	.	LowGQX	END=202935044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202935045	.	C	.	.	LowGQX	END=202935123	GT	./.
chr1	202935643	.	A	.	.	LowGQX	END=202935656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202935657	.	C	.	.	LowGQX	END=202935691	GT	./.
chr1	202935692	.	G	.	.	LowGQX	END=202935742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202935875	.	A	.	.	LowGQX	END=202935926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202935927	.	T	.	.	LowGQX	.	GT	./.
chr1	202935928	.	G	.	.	LowGQX	END=202935977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202935978	.	C	.	.	LowGQX	END=202936028	GT	./.
chr1	202936277	.	G	.	.	LowGQX	END=202936376	GT	./.
chr1	202955733	.	T	.	.	LowGQX	END=202955903	GT	./.
chr1	202955904	.	C	.	.	LowGQX	END=202956031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202956032	.	T	.	.	LowGQX	END=202956470	GT	./.
chr1	202976592	.	A	.	.	LowGQX	END=202976704	GT	./.
chr1	202976897	.	T	.	.	LowGQX	END=202976962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202976963	.	A	.	.	LowGQX	.	GT	./.
chr1	202976964	.	G	.	.	LowGQX	END=202976996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202977769	.	A	.	.	LowGQX	END=202977940	GT	./.
chr1	202984015	.	A	.	.	LowGQX	END=202984076	GT	./.
chr1	202984077	.	C	.	.	LowGQX	END=202984178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985086	.	A	.	.	LowGQX	END=202985096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985097	.	G	.	.	LowGQX	.	GT	./.
chr1	202985098	.	C	.	.	LowGQX	END=202985106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985107	.	T	.	.	LowGQX	.	GT	./.
chr1	202985108	.	C	.	.	LowGQX	END=202985163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985164	.	T	.	.	LowGQX	.	GT	./.
chr1	202985165	.	G	.	.	LowGQX	END=202985190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985191	.	T	.	.	LowGQX	.	GT	./.
chr1	202985192	.	A	.	.	LowGQX	END=202985195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985196	.	G	.	.	LowGQX	END=202985197	GT	./.
chr1	202985198	.	C	.	.	LowGQX	END=202985199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985200	.	T	.	.	LowGQX	END=202985201	GT	./.
chr1	202985202	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985203	.	G	.	.	LowGQX	.	GT	./.
chr1	202985204	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985205	.	T	.	.	LowGQX	.	GT	./.
chr1	202985206	.	G	.	.	LowGQX	END=202985207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985208	.	T	.	.	LowGQX	.	GT	./.
chr1	202985209	.	C	.	.	LowGQX	END=202985210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985211	.	A	.	.	LowGQX	END=202985214	GT	./.
chr1	202985215	.	T	.	.	LowGQX	END=202985216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985217	.	C	.	.	LowGQX	END=202985218	GT	./.
chr1	202985219	.	A	.	.	LowGQX	END=202985220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985221	.	A	.	.	LowGQX	END=202985222	GT	./.
chr1	202985223	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985224	.	C	.	.	LowGQX	.	GT	./.
chr1	202985225	.	C	.	.	LowGQX	END=202985226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985227	.	G	.	.	LowGQX	.	GT	./.
chr1	202985228	.	C	.	.	LowGQX	END=202985229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985230	.	A	.	.	LowGQX	.	GT	./.
chr1	202985231	.	T	.	.	LowGQX	END=202985232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985233	.	C	.	.	LowGQX	.	GT	./.
chr1	202985234	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985235	.	A	.	.	LowGQX	.	GT	./.
chr1	202985236	.	G	.	.	LowGQX	END=202985237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985238	.	A	.	.	LowGQX	.	GT	./.
chr1	202985239	.	A	.	.	LowGQX	END=202985242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985243	.	C	.	.	LowGQX	.	GT	./.
chr1	202985244	.	C	.	.	LowGQX	END=202985245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985246	.	C	.	.	LowGQX	END=202985248	GT	./.
chr1	202985249	.	G	.	.	LowGQX	END=202985250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985251	.	A	.	.	LowGQX	END=202985252	GT	./.
chr1	202985253	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985254	.	T	.	.	LowGQX	.	GT	./.
chr1	202985255	.	T	.	.	LowGQX	END=202985259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985260	.	A	.	.	LowGQX	.	GT	./.
chr1	202985261	.	A	.	.	LowGQX	END=202985263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985264	.	C	.	.	LowGQX	END=202985265	GT	./.
chr1	202985266	.	A	.	.	LowGQX	END=202985268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985269	.	G	.	.	LowGQX	.	GT	./.
chr1	202985270	.	T	.	.	LowGQX	END=202985277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985278	.	A	.	.	LowGQX	.	GT	./.
chr1	202985279	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985280	.	T	.	.	LowGQX	END=202985281	GT	./.
chr1	202985282	.	T	.	.	LowGQX	END=202985283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202985284	.	T	.	.	LowGQX	END=202985352	GT	./.
chr1	202987600	.	T	.	.	LowGQX	END=202987699	GT	./.
chr1	202989919	.	A	.	.	LowGQX	END=202989990	GT	./.
chr1	202989991	.	A	.	.	LowGQX	END=202990078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	202991981	.	A	.	.	LowGQX	END=202992114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	202992115	.	G	.	.	LowGQX	END=202992170	GT	./.
chr1	203003561	.	C	.	.	LowGQX	END=203003563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	203003564	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	203003565	.	G	.	.	LowGQX	END=203003590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203003591	.	T	.	.	LowGQX	.	GT	./.
chr1	203003592	.	G	.	.	LowGQX	END=203003608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203003609	.	A	.	.	LowGQX	END=203003705	GT	./.
chr1	203003706	.	G	.	.	LowGQX	END=203003707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203003708	.	C	.	.	LowGQX	.	GT	./.
chr1	203003709	.	T	.	.	LowGQX	END=203003711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203003712	.	A	.	.	LowGQX	.	GT	./.
chr1	203003713	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203003714	.	C	.	.	LowGQX	.	GT	./.
chr1	203003715	.	T	.	.	LowGQX	END=203003716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203003717	.	G	.	.	LowGQX	.	GT	./.
chr1	203003760	.	T	.	.	LowGQX	END=203003768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203003769	.	G	.	.	LowGQX	.	GT	./.
chr1	203003770	.	G	.	.	LowGQX	END=203003772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203003773	.	C	.	.	LowGQX	END=203003919	GT	./.
chr1	203004359	.	G	.	.	LowGQX	END=203004458	GT	./.
chr1	203004678	.	G	.	.	LowGQX	END=203004777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203006267	.	T	.	.	LowGQX	END=203006363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203006364	.	G	.	.	LowGQX	.	GT	./.
chr1	203006365	.	C	.	.	LowGQX	END=203006366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203008075	.	G	.	.	LowGQX	END=203008157	GT	./.
chr1	203008158	.	A	.	.	LowGQX	END=203008173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203008174	.	G	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	203008175	.	C	.	.	LowGQX	END=203008218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203008219	.	A	.	.	LowGQX	.	GT	./.
chr1	203008220	.	G	.	.	LowGQX	END=203008285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203008286	.	C	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	203008287	.	T	.	.	LowGQX	END=203008307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203008308	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	203008309	.	T	.	.	LowGQX	END=203008315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203008316	.	T	.	.	LowGQX	.	GT	./.
chr1	203008317	.	G	.	.	LowGQX	END=203008370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203012524	.	G	.	.	LowGQX	END=203012626	GT	./.
chr1	203013058	.	G	.	.	LowGQX	END=203013223	GT	./.
chr1	203013494	.	T	.	.	LowGQX	END=203013593	GT	./.
chr1	203013819	.	T	.	.	LowGQX	END=203013971	GT	./.
chr1	203014495	.	G	.	.	LowGQX	END=203014517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203014518	.	A	.	.	LowGQX	END=203014687	GT	./.
chr1	203014968	.	G	.	.	LowGQX	END=203015115	GT	./.
chr1	203015375	.	G	.	.	LowGQX	END=203015438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203015439	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	203015440	.	C	.	.	LowGQX	END=203015470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203015471	.	G	.	.	LowGQX	END=203015510	GT	./.
chr1	203017347	.	G	.	.	LowGQX	END=203017446	GT	./.
chr1	203017698	.	G	.	.	LowGQX	END=203017766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203017767	.	G	.	.	LowGQX	.	GT	./.
chr1	203017768	.	G	.	.	LowGQX	END=203017781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203017782	.	C	.	.	LowGQX	.	GT	./.
chr1	203017783	.	G	.	.	LowGQX	END=203017786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203017787	.	C	.	.	LowGQX	.	GT	./.
chr1	203017788	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203017789	.	A	.	.	LowGQX	.	GT	./.
chr1	203017790	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203017791	.	C	.	.	LowGQX	.	GT	./.
chr1	203017792	.	G	.	.	LowGQX	END=203017793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203017794	.	G	.	.	LowGQX	.	GT	./.
chr1	203017795	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203017796	.	G	.	.	LowGQX	.	GT	./.
chr1	203017797	.	T	.	.	LowGQX	END=203017802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203017803	.	G	.	.	LowGQX	.	GT	./.
chr1	203017804	.	C	.	.	LowGQX	END=203017824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203017825	.	G	.	.	LowGQX	END=203017842	GT	./.
chr1	203018027	.	C	.	.	LowGQX	END=203018126	GT	./.
chr1	203018800	.	A	.	.	LowGQX	END=203018899	GT	./.
chr1	203020896	.	G	.	.	LowGQX	END=203021005	GT	./.
chr1	203022880	.	G	.	.	LowGQX	END=203022889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203022890	.	A	.	.	LowGQX	.	GT	./.
chr1	203022891	.	C	.	.	LowGQX	END=203022931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203022932	.	G	.	.	LowGQX	END=203022957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	203022958	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	203022959	.	G	.	.	LowGQX	END=203022973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	203022974	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	203022975	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	203022976	.	G	.	.	LowGQX	END=203022978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	203022979	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	203022980	.	G	.	.	LowGQX	END=203023028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	203023029	.	A	.	.	LowGQX	END=203023084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	203023085	.	A	.	.	LowGQX	END=203023089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	203023169	.	T	.	.	LowGQX	END=203023198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203023199	.	T	.	.	LowGQX	END=203023214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	203023215	.	C	.	.	LowGQX	END=203023253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203023254	.	G	.	.	LowGQX	END=203023268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	203024559	.	G	.	.	LowGQX	END=203024800	GT	./.
chr1	203025216	.	A	.	.	LowGQX	END=203025315	GT	./.
chr1	203025502	.	G	.	.	LowGQX	END=203025636	GT	./.
chr1	203025911	.	G	.	.	LowGQX	END=203026078	GT	./.
chr1	203028303	.	T	.	.	LowGQX	END=203028402	GT	./.
chr1	203028889	.	T	.	.	LowGQX	END=203028988	GT	./.
chr1	203029344	.	G	.	.	LowGQX	END=203029347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203029348	.	T	.	.	LowGQX	END=203029545	GT	./.
chr1	203030079	.	G	.	.	LowGQX	END=203030108	GT	./.
chr1	203030109	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203030110	.	G	.	.	LowGQX	.	GT	./.
chr1	203030111	.	T	.	.	LowGQX	END=203030152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203030153	.	C	.	.	LowGQX	.	GT	./.
chr1	203030154	.	T	.	.	LowGQX	END=203030158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203030159	.	C	.	.	LowGQX	.	GT	./.
chr1	203030160	.	A	.	.	LowGQX	END=203030170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203030171	.	C	.	.	LowGQX	.	GT	./.
chr1	203030172	.	C	.	.	LowGQX	END=203030177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203030178	.	C	.	.	LowGQX	.	GT	./.
chr1	203030743	.	C	.	.	LowGQX	END=203030842	GT	./.
chr1	203032915	.	C	.	.	LowGQX	END=203033131	GT	./.
chr1	203036822	.	G	.	.	LowGQX	.	GT	./.
chr1	203036823	.	A	.	.	LowGQX	END=203036828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203036829	.	T	.	.	LowGQX	.	GT	./.
chr1	203036830	.	C	.	.	LowGQX	END=203036833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203036834	.	A	.	.	LowGQX	.	GT	./.
chr1	203036835	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203036836	.	T	.	.	LowGQX	.	GT	./.
chr1	203036837	.	A	.	.	LowGQX	END=203036838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203036839	.	G	.	.	LowGQX	.	GT	./.
chr1	203036840	.	G	.	.	LowGQX	END=203036844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203036845	.	A	.	.	LowGQX	END=203036846	GT	./.
chr1	203036847	.	G	.	.	LowGQX	END=203036848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203036849	.	G	.	.	LowGQX	.	GT	./.
chr1	203036850	.	T	.	.	LowGQX	END=203036859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203036860	.	C	.	.	LowGQX	.	GT	./.
chr1	203036861	.	T	.	.	LowGQX	END=203036863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203036864	.	A	.	.	LowGQX	END=203036888	GT	./.
chr1	203036889	.	G	.	.	LowGQX	END=203036891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203036892	.	G	.	.	LowGQX	.	GT	./.
chr1	203036893	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203036894	.	G	.	.	LowGQX	.	GT	./.
chr1	203036895	.	A	.	.	LowGQX	END=203036898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203036899	.	G	.	.	LowGQX	.	GT	./.
chr1	203036900	.	A	.	.	LowGQX	END=203036902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203036903	.	G	.	.	LowGQX	END=203036904	GT	./.
chr1	203036905	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203036906	.	A	.	.	LowGQX	.	GT	./.
chr1	203036907	.	G	.	.	LowGQX	END=203036919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203036920	.	G	.	.	LowGQX	.	GT	./.
chr1	203036921	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203037560	.	T	.	.	LowGQX	END=203037602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203037603	.	C	.	.	LowGQX	.	GT	./.
chr1	203037604	.	C	.	.	LowGQX	END=203037629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203037630	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	203037631	.	G	.	.	LowGQX	END=203037711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203037712	.	A	.	.	LowGQX	.	GT	./.
chr1	203037713	.	A	.	.	LowGQX	END=203037735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203037736	.	A	.	.	LowGQX	.	GT	./.
chr1	203037737	.	T	.	.	LowGQX	END=203037756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203040804	.	G	.	.	LowGQX	END=203040815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203040816	.	G	C	47.39	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=23.69;SB=-38.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:79,6,0:60:6:1.000
chr1	203040817	.	C	.	.	LowGQX	END=203040837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203040838	.	A	.	.	LowGQX	END=203040872	GT	./.
chr1	203040873	.	C	.	.	LowGQX	END=203040886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203040887	.	A	.	.	LowGQX	.	GT	./.
chr1	203040888	.	C	.	.	LowGQX	END=203040889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203040890	.	T	.	.	LowGQX	.	GT	./.
chr1	203040891	.	G	.	.	LowGQX	END=203040903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203044693	.	C	.	.	LowGQX	END=203044708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203044709	.	A	.	.	LowGQX	END=203044733	GT	./.
chr1	203044734	.	C	.	.	LowGQX	END=203044765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203044766	.	A	.	.	LowGQX	.	GT	./.
chr1	203044767	.	C	.	.	LowGQX	END=203044781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	203044782	.	C	A	9.30	LowGQX	BaseQRankSum=-1.026;DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.000;QD=2.32;ReadPosRankSum=1.026;SB=-30.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:38.75:39,0,39:60:9:0.500
chr1	203044783	.	A	.	.	LowGQX	END=203044825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	203044826	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	203044827	.	G	.	.	LowGQX	END=203044839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	203044840	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	203044841	.	C	.	.	LowGQX	END=203044893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	203045444	.	A	.	.	LowGQX	END=203045543	GT	./.
chr1	203053036	.	T	.	.	LowGQX	END=203053140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203053141	.	T	.	.	LowGQX	.	GT	./.
chr1	203053142	.	C	.	.	LowGQX	END=203053161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203053766	.	C	.	.	LowGQX	END=203053865	GT	./.
chr1	203054617	.	A	.	.	LowGQX	END=203054719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203054720	.	T	.	.	LowGQX	END=203055091	GT	./.
chr1	203097443	.	A	.	.	LowGQX	END=203097528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203097529	.	T	.	.	LowGQX	.	GT	./.
chr1	203097530	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203097531	.	T	.	.	LowGQX	.	GT	./.
chr1	203097532	.	G	.	.	LowGQX	END=203097534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203097535	.	A	.	.	LowGQX	.	GT	./.
chr1	203097536	.	C	.	.	LowGQX	END=203097540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203097541	.	G	.	.	LowGQX	.	GT	./.
chr1	203097542	.	C	.	.	LowGQX	END=203097545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203097546	.	C	.	.	LowGQX	.	GT	./.
chr1	203097547	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203097548	.	A	.	.	LowGQX	.	GT	./.
chr1	203097549	.	G	.	.	LowGQX	END=203097555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203097556	.	G	.	.	LowGQX	.	GT	./.
chr1	203097557	.	G	.	.	LowGQX	END=203097558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203097559	.	T	.	.	LowGQX	.	GT	./.
chr1	203097560	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203097968	.	C	.	.	PASS	END=203098028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	203098029	.	C	.	.	PASS	END=203098076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	203098077	.	G	.	.	PASS	END=203098144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	203098145	.	G	.	.	PASS	END=203098197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:256:99:60
chr1	203098198	.	T	.	.	PASS	END=203098263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:261:99:60
chr1	203098264	.	C	.	.	PASS	END=203098301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	203098302	.	C	.	.	PASS	END=203098312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	203119790	.	A	.	.	LowGQX	END=203119906	GT	./.
chr1	203134152	.	T	.	.	LowGQX	END=203134165	GT	./.
chr1	203134166	.	G	.	.	LowGQX	END=203134175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203134176	.	C	.	.	LowGQX	END=203134222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	203134223	.	C	.	.	LowGQX	END=203134255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	203134256	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	203134257	.	C	.	.	LowGQX	END=203134271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	203134272	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	203134273	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	203134274	.	C	.	.	PASS	END=203134275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	203134276	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	203134277	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	203134278	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	203134279	.	G	.	.	PASS	END=203134282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	203134283	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	203134284	.	G	.	.	PASS	END=203134293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	203134294	.	C	.	.	PASS	END=203134296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	203134297	.	C	.	.	PASS	END=203134308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	203134309	.	T	.	.	PASS	END=203134316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	203134317	.	A	.	.	PASS	END=203134323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	203134324	.	C	.	.	PASS	END=203134343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	203134344	.	G	.	.	PASS	END=203134345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	203134346	.	A	.	.	PASS	END=203134347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	203134348	.	C	.	.	PASS	END=203134361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	203134362	.	C	.	.	PASS	END=203134387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	203134388	.	G	.	.	PASS	END=203134414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	203134415	.	G	.	.	PASS	END=203134458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	203134459	.	G	.	.	PASS	END=203134518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	203134519	.	G	.	.	PASS	END=203134699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	203134700	.	C	.	.	PASS	END=203134860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	203134861	.	A	.	.	PASS	END=203134942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:260:99:60
chr1	203134943	.	T	.	.	PASS	END=203135011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:281:99:60
chr1	203135012	.	A	.	.	PASS	END=203135030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr1	203137686	.	G	.	.	LowGQX	END=203137707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203137708	.	C	.	.	LowGQX	.	GT	./.
chr1	203137709	.	T	.	.	LowGQX	END=203137710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203137711	.	T	.	.	LowGQX	.	GT	./.
chr1	203137712	.	G	.	.	LowGQX	END=203137717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203137718	.	C	.	.	LowGQX	.	GT	./.
chr1	203137719	.	A	.	.	LowGQX	END=203137730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203137731	.	G	.	.	LowGQX	.	GT	./.
chr1	203137732	.	A	.	.	LowGQX	END=203137746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203137747	.	C	.	.	LowGQX	END=203137748	GT	./.
chr1	203137749	.	A	.	.	LowGQX	END=203137755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203137756	.	T	.	.	LowGQX	END=203137757	GT	./.
chr1	203137758	.	G	.	.	LowGQX	END=203137767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203137768	.	A	.	.	LowGQX	END=203137845	GT	./.
chr1	203138032	.	A	.	.	LowGQX	END=203138183	GT	./.
chr1	203138184	.	G	.	.	LowGQX	END=203138222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203138379	.	A	.	.	LowGQX	END=203138402	GT	./.
chr1	203138403	.	C	.	.	LowGQX	END=203138424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203138425	.	C	.	.	LowGQX	.	GT	./.
chr1	203138426	.	A	.	.	LowGQX	END=203138450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203138451	.	G	.	.	LowGQX	.	GT	./.
chr1	203138452	.	G	.	.	LowGQX	END=203138454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203138455	.	G	.	.	LowGQX	.	GT	./.
chr1	203138456	.	G	.	.	LowGQX	END=203138552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203138553	.	T	.	.	LowGQX	END=203138567	GT	./.
chr1	203139417	.	A	.	.	LowGQX	END=203139580	GT	./.
chr1	203140187	.	A	.	.	LowGQX	END=203140330	GT	./.
chr1	203140509	.	A	.	.	LowGQX	END=203140708	GT	./.
chr1	203141008	.	C	.	.	LowGQX	END=203141226	GT	./.
chr1	203143556	.	A	.	.	LowGQX	END=203143557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	203143558	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	203143559	.	A	.	.	LowGQX	END=203143576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203143577	.	G	.	.	LowGQX	.	GT	./.
chr1	203143578	.	A	.	.	LowGQX	END=203143579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203143580	.	G	.	.	LowGQX	.	GT	./.
chr1	203143581	.	G	.	.	LowGQX	END=203143583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203143584	.	T	.	.	LowGQX	.	GT	./.
chr1	203143585	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203143586	.	G	.	.	LowGQX	.	GT	./.
chr1	203143587	.	T	.	.	LowGQX	END=203143593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203143594	.	T	.	.	LowGQX	.	GT	./.
chr1	203143595	.	G	.	.	LowGQX	END=203143642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203143643	.	G	.	.	LowGQX	.	GT	./.
chr1	203143644	.	A	.	.	LowGQX	END=203143663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203143664	.	G	.	.	LowGQX	.	GT	./.
chr1	203143665	.	T	.	.	LowGQX	END=203143697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203143698	.	C	.	.	LowGQX	END=203143727	GT	./.
chr1	203144453	.	A	.	.	LowGQX	END=203144591	GT	./.
chr1	203144677	.	A	.	.	LowGQX	END=203144885	GT	./.
chr1	203148571	.	G	.	.	PASS	END=203148618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	203148619	.	C	.	.	PASS	END=203148632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	203148633	.	A	G	4302.31	PASS	DP=157;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=12.3099;MQ=60;MQ0=0;QD=27.40;SB=-2736.80	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,157:157:99:4302,322,0:60:99:1.000
chr1	203148634	.	C	.	.	PASS	END=203148689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	203148690	.	C	.	.	PASS	END=203148712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	203148713	.	C	.	.	PASS	END=203148734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	203148735	.	A	.	.	PASS	END=203148768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	203148769	.	A	.	.	PASS	END=203148812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	203148813	.	G	.	.	PASS	END=203148833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	203148834	.	G	.	.	PASS	END=203148881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	203148882	.	A	.	.	PASS	END=203148978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	203148979	.	T	.	.	PASS	END=203149007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	203149596	.	A	.	.	PASS	END=203149613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	203149614	.	G	.	.	PASS	END=203149635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	203149636	.	G	.	.	PASS	END=203149736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr1	203149737	.	C	.	.	PASS	END=203149762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	203149763	.	G	.	.	PASS	END=203149776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	203149777	.	A	.	.	PASS	END=203149786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	203149787	.	G	.	.	PASS	END=203149795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	203150288	.	A	.	.	PASS	END=203150321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	203150322	.	C	.	.	PASS	END=203150365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	203150366	.	C	.	.	PASS	END=203150415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	203151857	.	A	.	.	PASS	END=203151885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	203151886	.	C	.	.	PASS	END=203151907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	203151908	.	C	.	.	PASS	END=203151982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	203152767	.	A	.	.	PASS	END=203152800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	203152801	.	T	C	1177.03	PASS	BaseQRankSum=0.195;DP=74;Dels=0.00;FS=3.981;HRun=2;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=0.463;QD=15.91;ReadPosRankSum=1.722;SB=-282.36	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,46:74:99:1207,0,700:60:99:0.622
chr1	203152802	.	C	.	.	PASS	END=203152810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	203152811	.	G	.	.	PASS	END=203152916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	203152917	.	A	.	.	PASS	END=203152921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	203153683	.	C	.	.	PASS	END=203153768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	203153769	.	C	.	.	PASS	END=203153782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	203154310	.	A	.	.	PASS	END=203154330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	203154331	.	G	.	.	PASS	END=203154343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	203154344	.	C	.	.	PASS	END=203154475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:256:99:60
chr1	203154476	.	C	.	.	PASS	END=203154492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	203154493	.	A	.	.	PASS	END=203154508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	203154509	.	A	.	.	PASS	END=203154515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	203155409	.	C	.	.	PASS	END=203155444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	203155445	.	G	.	.	PASS	END=203155508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	203155690	.	A	.	.	PASS	END=203155702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	203155703	.	A	T	890.57	PASS	BaseQRankSum=-2.046;DP=90;Dels=0.00;FS=1.910;HRun=2;HaplotypeScore=15.4139;MQ=60;MQ0=0;MQRankSum=-1.417;QD=9.90;ReadPosRankSum=-1.271;SB=-478.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,46:90:99:921,0,930:60:99:0.511
chr1	203155704	.	T	.	.	PASS	END=203155779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	203155780	.	T	.	.	PASS	END=203155789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	203174930	.	A	.	.	LowGQX	END=203175029	GT	./.
chr1	203185206	.	G	.	.	PASS	END=203185230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	203185231	.	C	.	.	PASS	END=203185242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	203185243	.	G	.	.	PASS	END=203185261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	203185262	.	T	.	.	PASS	END=203185291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr1	203185292	.	G	.	.	PASS	END=203185325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:279:99:60
chr1	203185326	.	G	.	.	PASS	END=203185594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:300:99:60
chr1	203185595	.	C	.	.	PASS	END=203185698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:268:99:60
chr1	203185699	.	A	.	.	PASS	END=203185762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:323:99:60
chr1	203185763	.	T	.	.	PASS	END=203185876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:336:99:60
chr1	203185877	.	G	.	.	PASS	END=203185923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:259:99:60
chr1	203185924	.	C	.	.	PASS	END=203185962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:249:99:60
chr1	203185963	.	G	.	.	PASS	END=203186051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:280:99:60
chr1	203186052	.	A	.	.	PASS	END=203186110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:293:99:60
chr1	203186111	.	C	.	.	PASS	END=203186155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	203186156	.	T	.	.	PASS	END=203186186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	203186187	.	C	.	.	PASS	END=203186211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	203186212	.	T	.	.	PASS	END=203186254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	203186255	.	G	.	.	PASS	END=203186281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	203186282	.	C	.	.	PASS	END=203186312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	203186429	.	C	.	.	PASS	END=203186520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	203186521	.	T	.	.	PASS	END=203186548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	203186816	.	G	.	.	PASS	END=203186843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	203186844	.	C	.	.	PASS	END=203186859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	203186860	.	T	.	.	PASS	END=203186962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	203186963	.	C	.	.	PASS	END=203187004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	203187005	.	G	.	.	PASS	END=203187044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	203187062	.	C	.	.	PASS	END=203187094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	203187095	.	G	.	.	PASS	END=203187215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	203187216	.	T	.	.	PASS	END=203187242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	203188293	.	A	.	.	PASS	END=203188312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	203188313	.	C	.	.	PASS	END=203188320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	203188321	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:57:60
chr1	203188322	.	T	.	.	PASS	END=203188339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	203188340	.	T	.	.	PASS	END=203188423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	203188424	.	T	.	.	PASS	END=203188472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	203188473	.	G	.	.	PASS	END=203188493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	203188494	.	G	.	.	PASS	END=203188498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	203188499	.	T	.	.	PASS	END=203188503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:66:60
chr1	203188504	.	C	.	.	PASS	END=203188508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	203188741	.	C	.	.	PASS	END=203188748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	203188749	.	C	.	.	PASS	END=203188753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	203188754	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	203188755	.	C	.	.	PASS	END=203188774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	203188775	.	G	.	.	PASS	END=203188786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	203188787	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:6:60
chr1	203188788	.	C	.	.	PASS	END=203188800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	203188801	.	G	.	.	PASS	END=203188803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	203188804	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:27:60
chr1	203188805	.	A	.	.	PASS	END=203188818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	203188819	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:33:27:60
chr1	203188820	.	T	.	.	PASS	END=203188836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	203188837	.	A	.	.	PASS	END=203188851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	203188852	.	G	.	.	PASS	END=203188889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	203188890	.	G	.	.	PASS	END=203188971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	203188972	.	A	.	.	PASS	END=203189027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	203189028	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:99:60
chr1	203191279	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:48:60
chr1	203191280	.	A	.	.	PASS	END=203191284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	203191285	.	C	.	.	PASS	END=203191291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	203191292	.	A	.	.	PASS	END=203191297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	203191298	.	G	.	.	PASS	END=203191299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	203191300	.	G	.	.	PASS	END=203191310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	203191311	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:90:60
chr1	203191312	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:45:60
chr1	203191313	.	C	.	.	PASS	END=203191319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	203191320	.	C	.	.	PASS	END=203191331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	203191332	.	C	.	.	PASS	END=203191346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	203191347	.	C	.	.	PASS	END=203191372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	203191373	.	T	.	.	PASS	END=203191390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	203191391	.	C	.	.	PASS	END=203191413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	203191414	.	A	.	.	PASS	END=203191471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	203191472	.	A	.	.	PASS	END=203191504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	203192212	.	G	.	.	PASS	END=203192231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	203192232	.	C	.	.	PASS	END=203192268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	203192269	.	A	.	.	PASS	END=203192295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	203192296	.	A	.	.	PASS	END=203192374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	203192375	.	C	.	.	PASS	END=203192400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	203192401	.	G	.	.	PASS	END=203192420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	203192421	.	C	.	.	PASS	END=203192438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	203192572	.	C	.	.	PASS	END=203192583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	203192584	.	C	.	.	PASS	END=203192603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	203192604	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:61:60
chr1	203192605	.	C	.	.	PASS	END=203192615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	203192616	.	G	.	.	PASS	END=203192632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	203192633	.	G	.	.	PASS	END=203192678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	203192679	.	G	.	.	PASS	END=203192778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	203192779	.	A	.	.	PASS	END=203192800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	203192801	.	G	.	.	PASS	END=203192819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	203192820	.	C	T	768.38	PASS	BaseQRankSum=1.047;DP=57;Dels=0.00;FS=1.328;HRun=0;HaplotypeScore=10.5206;MQ=60;MQ0=0;MQRankSum=-0.035;QD=13.48;ReadPosRankSum=-2.023;SB=-261.09	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:21,33:57:99:798,0,526:60:99:0.611
chr1	203192821	.	C	.	.	PASS	END=203192838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	203192839	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:63:60
chr1	203194125	.	C	.	.	PASS	END=203194155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	203194156	.	G	.	.	PASS	END=203194177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	203194178	.	C	.	.	PASS	END=203194185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	203194186	.	C	T	1411.80	PASS	BaseQRankSum=2.141;DP=132;Dels=0.00;FS=0.681;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=0.253;QD=10.70;ReadPosRankSum=0.375;SB=-761.65	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:66,66:132:99:1442,0,1504:60:99:0.500
chr1	203194187	.	G	.	.	PASS	END=203194260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	203194261	.	T	.	.	PASS	END=203194283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	203194746	.	A	.	.	PASS	END=203194747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	203194748	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:60:60
chr1	203194749	.	T	.	.	PASS	END=203194751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	203194752	.	C	.	.	PASS	END=203194757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:75:60
chr1	203194758	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:36:9:60
chr1	203194759	.	C	.	.	PASS	END=203194760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	203194761	.	A	.	.	PASS	END=203194764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:48:60
chr1	203194765	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:24:60
chr1	203194766	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:63:60
chr1	203194767	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:48:60
chr1	203194768	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:66:60
chr1	203194769	.	C	.	.	PASS	END=203194774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	203194775	.	C	.	.	PASS	END=203194780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	203194781	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:60:60
chr1	203194782	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:99:60
chr1	203194783	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:71:60
chr1	203194784	.	T	.	.	PASS	END=203194786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	203194787	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:60:60
chr1	203194788	.	T	.	.	PASS	END=203194807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	203194808	.	G	.	.	PASS	END=203194837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	203194838	.	A	.	.	PASS	END=203194857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	203194858	.	G	.	.	PASS	END=203194934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	203194935	.	C	.	.	PASS	END=203194957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	203194958	.	G	.	.	PASS	END=203194992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:83:60
chr1	203194993	.	C	.	.	PASS	END=203195002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	203195003	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:51:60
chr1	203195004	.	C	.	.	PASS	END=203195018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	203195019	.	A	.	.	PASS	END=203195033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:59
chr1	203195034	.	A	.	.	PASS	END=203195048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	203195049	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:42:60
chr1	203197610	.	T	.	.	PASS	END=203197634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	203197635	.	A	.	.	PASS	END=203197731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	203197732	.	T	.	.	PASS	END=203197741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	203198689	.	T	.	.	PASS	END=203198693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	203198694	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:60:60
chr1	203198695	.	C	.	.	PASS	END=203198701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	203198702	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:75:60
chr1	203198703	.	C	.	.	PASS	END=203198723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	203198724	.	C	.	.	PASS	END=203198731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	203198732	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:69:60
chr1	203198733	.	G	.	.	PASS	END=203198747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	203198748	.	G	.	.	PASS	END=203198798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	203198799	.	A	.	.	PASS	END=203198849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	203198850	.	C	.	.	PASS	END=203198860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	203274733	.	A	.	.	LowGQX	END=203274912	GT	./.
chr1	203276230	.	A	.	.	LowGQX	END=203276568	GT	./.
chr1	203311469	.	G	.	.	LowGQX	END=203311504	GT	./.
chr1	203311505	.	A	.	.	LowGQX	END=203311510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203311511	.	G	.	.	LowGQX	.	GT	./.
chr1	203311512	.	C	.	.	LowGQX	END=203311538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203311539	.	T	.	.	LowGQX	.	GT	./.
chr1	203311540	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203311541	.	T	.	.	LowGQX	.	GT	./.
chr1	203311542	.	C	.	.	LowGQX	END=203311544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203311545	.	T	.	.	LowGQX	.	GT	./.
chr1	203311546	.	C	.	.	LowGQX	END=203311624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203316418	.	A	.	.	LowGQX	END=203316780	GT	./.
chr1	203316781	.	G	.	.	LowGQX	END=203316813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203316814	.	A	.	.	LowGQX	.	GT	./.
chr1	203316815	.	G	.	.	LowGQX	END=203316826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203316827	.	A	.	.	LowGQX	.	GT	./.
chr1	203316828	.	C	.	.	LowGQX	END=203316864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203316865	.	C	.	.	LowGQX	.	GT	./.
chr1	203316866	.	A	.	.	LowGQX	END=203316869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203316870	.	A	.	.	LowGQX	.	GT	./.
chr1	203316871	.	T	.	.	LowGQX	END=203316878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203316879	.	G	.	.	LowGQX	.	GT	./.
chr1	203316880	.	G	.	.	LowGQX	END=203316885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203316886	.	G	.	.	LowGQX	.	GT	./.
chr1	203316887	.	G	.	.	LowGQX	END=203316889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203316890	.	A	.	.	LowGQX	.	GT	./.
chr1	203316891	.	T	.	.	LowGQX	END=203316898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203316899	.	A	.	.	LowGQX	.	GT	./.
chr1	203316900	.	G	.	.	LowGQX	END=203316902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203316903	.	T	.	.	LowGQX	.	GT	./.
chr1	203316904	.	G	.	.	LowGQX	END=203316953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203316954	.	T	.	.	LowGQX	.	GT	./.
chr1	203316955	.	C	.	.	LowGQX	END=203317003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203317004	.	A	.	.	LowGQX	.	GT	./.
chr1	203317005	.	G	.	.	LowGQX	END=203317014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203317015	.	G	.	.	LowGQX	.	GT	./.
chr1	203317016	.	G	.	.	LowGQX	END=203317044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203317045	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	203317046	.	G	.	.	LowGQX	END=203317094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203317095	.	A	.	.	LowGQX	.	GT	./.
chr1	203317096	.	G	.	.	LowGQX	END=203317109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203317110	.	G	.	.	LowGQX	.	GT	./.
chr1	203317111	.	G	.	.	LowGQX	END=203317140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203317141	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	203317142	.	A	.	.	LowGQX	END=203317169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	203317170	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	203317171	.	G	.	.	LowGQX	END=203317172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	203317173	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	203317174	.	G	.	.	LowGQX	END=203317177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203317178	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	203317179	.	G	.	.	LowGQX	END=203317180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203317181	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	203317182	.	G	.	.	LowGQX	END=203317184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203317185	.	C	.	.	LowGQX	.	GT	./.
chr1	203317186	.	T	.	.	LowGQX	END=203317200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203317201	.	G	.	.	LowGQX	.	GT	./.
chr1	203317202	.	C	.	.	LowGQX	END=203317212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203317213	.	G	T	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	203317214	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203317215	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	203317216	.	T	.	.	LowGQX	END=203317231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203317232	.	C	.	.	LowGQX	.	GT	./.
chr1	203317233	.	C	.	.	LowGQX	END=203317236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203317237	.	G	.	.	LowGQX	.	GT	./.
chr1	203317238	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203317239	.	G	.	.	LowGQX	.	GT	./.
chr1	203317240	.	G	.	.	LowGQX	END=203317242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203317243	.	A	.	.	LowGQX	.	GT	./.
chr1	203317244	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203317245	.	G	.	.	LowGQX	.	GT	./.
chr1	203317246	.	C	.	.	LowGQX	END=203317252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203317253	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	203317254	.	T	.	.	LowGQX	END=203317256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203317257	.	C	.	.	LowGQX	.	GT	./.
chr1	203317258	.	A	.	.	LowGQX	END=203317262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203317263	.	G	.	.	LowGQX	.	GT	./.
chr1	203317264	.	G	.	.	LowGQX	END=203317265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203317266	.	A	.	.	LowGQX	.	GT	./.
chr1	203317267	.	A	.	.	LowGQX	END=203317269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203317270	.	G	.	.	LowGQX	END=203317277	GT	./.
chr1	203317278	.	G	.	.	LowGQX	END=203317351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203317352	.	G	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr1	203317353	.	A	.	.	LowGQX	END=203317400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452311	.	T	.	.	LowGQX	END=203452318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	203452319	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	203452320	.	C	.	.	LowGQX	END=203452359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	203452360	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	203452361	.	G	.	.	LowGQX	END=203452389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	203452390	.	A	.	.	LowGQX	END=203452391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	203452392	.	G	.	.	LowGQX	END=203452410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	203452411	.	G	.	4.69	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.01:60:0
chr1	203452412	.	C	.	.	LowGQX	END=203452416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	203452417	.	A	.	.	LowGQX	END=203452418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	203452419	.	C	.	.	LowGQX	END=203452421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	203452422	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	203452423	.	G	.	.	LowGQX	END=203452426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	203452427	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	203452428	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	203452429	.	G	.	.	LowGQX	END=203452432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	203452433	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:4:6.02:60:6
chr1	203452434	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	203452435	.	G	.	.	LowGQX	END=203452438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	203452439	.	A	.	.	LowGQX	END=203452440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	203452441	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	203452442	.	C	.	.	LowGQX	END=203452444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	203452445	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	203452446	.	G	.	.	LowGQX	END=203452447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	203452448	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	203452449	.	T	.	.	LowGQX	END=203452481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	203452482	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	203452483	.	C	.	.	LowGQX	END=203452512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	203452513	.	A	.	.	LowGQX	END=203452515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203452516	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	203452517	.	A	.	.	LowGQX	END=203452626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452627	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	203452628	.	T	.	.	LowGQX	END=203452638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452639	.	C	.	.	LowGQX	.	GT	./.
chr1	203452640	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452641	.	A	.	.	LowGQX	END=203452642	GT	./.
chr1	203452643	.	A	.	.	LowGQX	END=203452645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452646	.	A	.	.	LowGQX	.	GT	./.
chr1	203452647	.	A	.	.	LowGQX	END=203452649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452650	.	T	.	.	LowGQX	.	GT	./.
chr1	203452651	.	C	.	.	LowGQX	END=203452659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452660	.	G	.	.	LowGQX	.	GT	./.
chr1	203452661	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452662	.	T	.	.	LowGQX	.	GT	./.
chr1	203452663	.	C	.	.	LowGQX	END=203452665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452666	.	G	.	.	LowGQX	.	GT	./.
chr1	203452667	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452668	.	T	.	.	LowGQX	.	GT	./.
chr1	203452669	.	G	.	.	LowGQX	END=203452672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452673	.	T	.	.	LowGQX	.	GT	./.
chr1	203452674	.	C	.	.	LowGQX	END=203452679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452680	.	A	.	.	LowGQX	.	GT	./.
chr1	203452681	.	G	.	.	LowGQX	END=203452682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452683	.	A	.	.	LowGQX	.	GT	./.
chr1	203452684	.	T	.	.	LowGQX	END=203452687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452688	.	A	.	.	LowGQX	.	GT	./.
chr1	203452689	.	C	.	.	LowGQX	END=203452702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452703	.	A	.	.	LowGQX	.	GT	./.
chr1	203452704	.	T	.	.	LowGQX	END=203452707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452708	.	C	.	.	LowGQX	.	GT	./.
chr1	203452709	.	C	.	.	LowGQX	END=203452711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452712	.	G	.	.	LowGQX	.	GT	./.
chr1	203452713	.	A	.	.	LowGQX	END=203452736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452737	.	A	.	.	LowGQX	.	GT	./.
chr1	203452738	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452739	.	C	.	.	LowGQX	.	GT	./.
chr1	203452740	.	A	.	.	LowGQX	END=203452745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452746	.	T	.	.	LowGQX	.	GT	./.
chr1	203452747	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452748	.	C	.	.	LowGQX	.	GT	./.
chr1	203452749	.	T	.	.	LowGQX	END=203452767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452768	.	G	.	.	LowGQX	.	GT	./.
chr1	203452769	.	G	.	.	LowGQX	END=203452771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452772	.	T	.	.	LowGQX	END=203452773	GT	./.
chr1	203452774	.	C	.	.	LowGQX	END=203452777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203452778	.	T	.	.	LowGQX	END=203452961	GT	./.
chr1	203452962	.	T	.	.	LowGQX	END=203453005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453006	.	A	.	.	LowGQX	.	GT	./.
chr1	203453007	.	T	.	.	LowGQX	END=203453008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453009	.	C	.	.	LowGQX	END=203453011	GT	./.
chr1	203453012	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453013	.	G	.	.	LowGQX	.	GT	./.
chr1	203453014	.	A	.	.	LowGQX	END=203453016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453017	.	G	.	.	LowGQX	END=203453024	GT	./.
chr1	203453025	.	C	.	.	LowGQX	END=203453026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453027	.	A	.	.	LowGQX	.	GT	./.
chr1	203453028	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453029	.	G	.	.	LowGQX	END=203453030	GT	./.
chr1	203453031	.	T	.	.	LowGQX	END=203453035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453036	.	A	.	.	LowGQX	.	GT	./.
chr1	203453037	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453038	.	C	.	.	LowGQX	END=203453039	GT	./.
chr1	203453040	.	C	.	.	LowGQX	END=203453041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453042	.	A	.	.	LowGQX	END=203453043	GT	./.
chr1	203453044	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453045	.	C	.	.	LowGQX	.	GT	./.
chr1	203453046	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453047	.	C	.	.	LowGQX	END=203453050	GT	./.
chr1	203453051	.	C	.	.	LowGQX	END=203453054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453055	.	A	.	.	LowGQX	END=203453056	GT	./.
chr1	203453057	.	C	.	.	LowGQX	END=203453059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453060	.	G	.	.	LowGQX	.	GT	./.
chr1	203453061	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453062	.	C	.	.	LowGQX	.	GT	./.
chr1	203453063	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453064	.	G	.	.	LowGQX	.	GT	./.
chr1	203453065	.	T	.	.	LowGQX	END=203453072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203453073	.	T	.	.	LowGQX	.	GT	./.
chr1	203453074	.	T	.	.	LowGQX	END=203453079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203453080	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	203453081	.	A	.	.	LowGQX	END=203453085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203453086	.	T	.	.	LowGQX	.	GT	./.
chr1	203453087	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203453088	.	A	.	.	LowGQX	.	GT	./.
chr1	203453089	.	C	.	.	LowGQX	END=203453107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203453108	.	C	.	.	LowGQX	.	GT	./.
chr1	203453109	.	C	.	.	LowGQX	END=203453111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203453112	.	A	.	.	LowGQX	.	GT	./.
chr1	203453113	.	T	.	.	LowGQX	END=203453119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453120	.	T	.	.	LowGQX	.	GT	./.
chr1	203453121	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453122	.	C	.	.	LowGQX	.	GT	./.
chr1	203453123	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453124	.	T	.	.	LowGQX	END=203453125	GT	./.
chr1	203453126	.	C	.	.	LowGQX	END=203453127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453128	.	G	.	.	LowGQX	.	GT	./.
chr1	203453129	.	C	.	.	LowGQX	END=203453130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453131	.	T	.	.	LowGQX	END=203453133	GT	./.
chr1	203453134	.	C	.	.	LowGQX	END=203453137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453138	.	A	.	.	LowGQX	END=203453139	GT	./.
chr1	203453140	.	C	.	.	LowGQX	END=203453141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453142	.	A	.	.	LowGQX	.	GT	./.
chr1	203453143	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453144	.	C	.	.	LowGQX	.	GT	./.
chr1	203453145	.	T	.	.	LowGQX	END=203453146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453147	.	A	.	.	LowGQX	.	GT	./.
chr1	203453148	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453149	.	A	.	.	LowGQX	.	GT	./.
chr1	203453150	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453151	.	A	.	.	LowGQX	END=203453152	GT	./.
chr1	203453153	.	A	.	.	LowGQX	END=203453154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453155	.	G	.	.	LowGQX	END=203453156	GT	./.
chr1	203453157	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453158	.	A	.	.	LowGQX	.	GT	./.
chr1	203453159	.	C	.	.	LowGQX	END=203453160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453161	.	C	.	.	LowGQX	END=203453163	GT	./.
chr1	203453164	.	C	.	.	LowGQX	END=203453173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453174	.	T	.	.	LowGQX	.	GT	./.
chr1	203453175	.	T	.	.	LowGQX	END=203453176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453177	.	A	.	.	LowGQX	.	GT	./.
chr1	203453178	.	A	.	.	LowGQX	END=203453182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453183	.	T	.	.	LowGQX	END=203453184	GT	./.
chr1	203453185	.	C	.	.	LowGQX	END=203453191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453192	.	C	.	.	LowGQX	.	GT	./.
chr1	203453193	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453194	.	T	.	.	LowGQX	.	GT	./.
chr1	203453195	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453196	.	T	.	.	LowGQX	.	GT	./.
chr1	203453197	.	G	.	.	LowGQX	END=203453215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203453216	.	A	.	.	LowGQX	END=203453287	GT	./.
chr1	203455832	.	A	.	.	LowGQX	END=203456011	GT	./.
chr1	203465083	.	C	.	.	PASS	END=203465085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	203465086	.	T	.	.	PASS	END=203465093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	203465094	.	A	.	.	PASS	END=203465100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	203465101	.	G	.	.	PASS	END=203465119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	203465120	.	C	.	.	PASS	END=203465124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	203465125	.	T	.	.	PASS	END=203465126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	203465127	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:39:60
chr1	203465128	.	C	.	.	PASS	END=203465137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	203465138	.	G	.	.	PASS	END=203465152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	203465153	.	T	.	.	PASS	END=203465174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	203465175	.	G	.	.	PASS	END=203465185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	203465186	.	G	.	.	PASS	END=203465216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	203465217	.	G	.	.	PASS	END=203465254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	203465255	.	T	.	.	PASS	END=203465328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	203465329	.	G	.	.	PASS	END=203465347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:90:60
chr1	203465348	.	G	.	.	PASS	END=203465366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	203465367	.	G	.	.	PASS	END=203465383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	203465384	.	A	.	.	PASS	END=203465395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	203465396	.	T	C	815.04	PASS	BaseQRankSum=-0.693;DP=31;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=-1.617;QD=26.29;ReadPosRankSum=-0.809;SB=-87.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,29:31:32.91:848,33,0:60:33:0.967
chr1	203465397	.	G	.	.	PASS	END=203465406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	203465407	.	G	.	.	PASS	END=203465411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	203465412	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:36:60
chr1	203465413	.	C	.	.	PASS	END=203465415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	203466054	.	T	.	.	PASS	END=203466063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	203466064	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:63:60
chr1	203466065	.	C	.	.	PASS	END=203466077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	203466078	.	A	.	.	PASS	END=203466089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	203466090	.	G	.	.	PASS	END=203466124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	203466125	.	T	.	.	PASS	END=203466162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	203466163	.	C	.	.	PASS	END=203466222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	203466223	.	T	.	.	PASS	END=203466233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	203466234	.	C	.	.	PASS	END=203466261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	203466262	.	G	.	.	PASS	END=203466283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	203466284	.	A	.	.	PASS	END=203466294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	203467758	.	G	.	.	PASS	END=203467779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	203467780	.	C	.	.	PASS	END=203467819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	203467820	.	T	.	.	PASS	END=203467849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	203467850	.	G	.	.	PASS	END=203467947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	203467948	.	C	.	.	PASS	END=203467976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	203467977	.	G	.	.	PASS	END=203468000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	203468001	.	C	.	.	PASS	END=203468015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	203468016	.	A	.	.	PASS	END=203468018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	203468726	.	A	.	.	PASS	END=203468759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:79:60
chr1	203468760	.	C	.	.	PASS	END=203468790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	203468791	.	A	.	.	PASS	END=203468841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	203468842	.	C	.	.	PASS	END=203468910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	203468911	.	G	.	.	PASS	END=203468939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	203468940	.	T	.	.	PASS	END=203468966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	203468967	.	T	.	.	PASS	END=203468981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	203468982	.	G	.	.	PASS	END=203468990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	203468991	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:42:60
chr1	203468992	.	C	.	.	PASS	END=203468994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	203468995	.	A	.	.	PASS	END=203469004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	203469005	.	T	.	.	PASS	END=203469009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	203469010	.	C	.	.	PASS	END=203469013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	203469014	.	T	.	.	PASS	END=203469021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	203469022	.	C	.	.	LowGQX	END=203469024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	203469025	.	C	.	.	PASS	END=203469027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	203469028	.	C	.	.	LowGQX	END=203469030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	203471991	.	C	.	.	PASS	END=203472013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	203472014	.	C	.	.	PASS	END=203472121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	203472122	.	C	.	.	PASS	END=203472132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	203472133	.	T	.	.	PASS	END=203472153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	203472154	.	A	.	.	PASS	END=203472165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	203472166	.	A	.	.	PASS	END=203472171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	203472172	.	A	.	.	PASS	END=203472173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	203472174	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:30:60
chr1	203472175	.	G	.	.	PASS	END=203472188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	203472627	.	T	.	.	PASS	END=203472654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	203472655	.	C	.	.	PASS	END=203472671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	203472672	.	T	.	.	PASS	END=203472685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	203472686	.	G	.	.	PASS	END=203472791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	203472792	.	C	.	.	PASS	END=203472812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	203472813	.	T	.	.	PASS	END=203472833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	203472834	.	G	.	.	PASS	END=203472846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	203472847	.	A	.	.	PASS	END=203472890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	203472891	.	A	.	.	PASS	END=203472899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	203652332	.	A	.	.	PASS	END=203652348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	203652349	.	G	.	.	PASS	END=203652394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	203652395	.	A	.	.	PASS	END=203652443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:60
chr1	203652444	.	A	G	6618.66	PASS	DP=239;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=17.0968;MQ=60;MQ0=0;QD=27.69;SB=-3716.18	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,238:239:99:6619,494,0:60:99:1.000
chr1	203652445	.	A	.	.	PASS	END=203652493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	203652494	.	T	.	.	PASS	END=203652528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	203667283	.	A	.	.	PASS	END=203667299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	203667300	.	C	.	.	PASS	END=203667346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	203667347	.	C	.	.	PASS	END=203667408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	203667409	.	T	C	2952.27	PASS	DP=108;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.6281;MQ=60;MQ0=0;QD=27.34;SB=-1140.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,107:108:99:2985,226,0:60:99:1.000
chr1	203667410	.	A	.	.	PASS	END=203667464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	203667465	.	C	.	.	PASS	END=203667484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	203668586	.	A	.	.	PASS	END=203668608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	203668609	.	C	.	.	PASS	END=203668821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	203668822	.	G	.	.	PASS	END=203668846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	203668847	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:90:99:60
chr1	203669332	.	A	.	.	PASS	END=203669437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	203669438	.	A	.	.	PASS	END=203669461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	203669924	.	A	.	.	PASS	END=203669974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	203669975	.	T	.	.	PASS	END=203670041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:96:60
chr1	203670042	.	A	.	.	PASS	END=203670053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	203671140	.	C	.	.	PASS	END=203671235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	203671236	.	C	.	.	PASS	END=203671239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	203672778	.	A	.	.	PASS	END=203672801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	203672802	.	C	.	.	PASS	END=203672868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:271:99:60
chr1	203672869	.	A	.	.	PASS	END=203672915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:280:99:60
chr1	203672916	.	C	.	.	PASS	END=203672934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr1	203672935	.	A	.	.	PASS	END=203672943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	203676135	.	A	.	.	PASS	END=203676140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	203676141	.	G	.	.	PASS	END=203676171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	203676172	.	A	.	.	PASS	END=203676227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	203676228	.	G	.	.	PASS	END=203676319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	203676320	.	C	.	.	PASS	END=203676344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	203676345	.	T	.	.	PASS	END=203676353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	203676988	.	A	.	.	PASS	END=203677033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	203677034	.	T	.	.	PASS	END=203677208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	203677209	.	A	.	.	PASS	END=203677234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	203678427	.	A	.	.	PASS	END=203678494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr1	203678495	.	T	.	.	PASS	END=203678580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	203678581	.	A	.	.	PASS	END=203678672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	203680003	.	A	.	.	PASS	END=203680194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	203680195	.	T	.	.	PASS	END=203680220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	203680221	.	C	.	.	PASS	END=203680238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	203681086	.	A	.	.	PASS	END=203681155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	203681156	.	C	.	.	PASS	END=203681240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	203681241	.	C	.	.	PASS	END=203681269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	203682287	.	T	.	.	PASS	END=203682379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	203682380	.	G	.	.	PASS	END=203682386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	203683297	.	A	.	.	PASS	END=203683324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	203683325	.	C	.	.	PASS	END=203683407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	203689675	.	A	.	.	PASS	END=203689693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	203689694	.	T	.	.	PASS	END=203689728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	203689729	.	A	.	.	PASS	END=203689840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:60
chr1	203689841	.	A	.	.	PASS	END=203689860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	203689861	.	T	.	.	PASS	END=203689870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	203690323	.	A	.	.	PASS	END=203690342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	203690343	.	G	.	.	PASS	END=203690505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	203690506	.	A	.	.	PASS	END=203690540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	203691604	.	A	.	.	PASS	END=203691624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	203691625	.	T	.	.	PASS	END=203691633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	203691634	.	G	.	.	PASS	END=203691635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	203691636	.	G	.	.	PASS	END=203691642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	203691643	.	A	.	.	PASS	END=203691644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	203691645	.	C	.	.	PASS	END=203691675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	203691676	.	C	.	.	PASS	END=203691678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr1	203691679	.	T	.	.	PASS	END=203691686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chr1	203691687	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chr1	203691688	.	C	.	.	PASS	END=203691697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	203691698	.	C	.	.	PASS	END=203691733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	203691734	.	A	.	.	PASS	END=203691745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	203691746	.	A	.	.	PASS	END=203691784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	203691785	.	T	.	.	PASS	END=203691800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	203691801	.	G	.	.	PASS	END=203691814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	203691815	.	C	.	.	PASS	END=203691819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	203693007	.	A	.	.	PASS	END=203693045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	203693046	.	G	.	.	PASS	END=203693094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	203693095	.	T	.	.	PASS	END=203693118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	203696521	.	A	.	.	PASS	END=203696561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	203696562	.	A	.	.	PASS	END=203696651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	203696652	.	C	.	.	PASS	END=203696700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	203696701	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:60
chr1	203697270	.	A	.	.	LowGQX	END=203697369	GT	./.
chr1	203698709	.	G	.	.	LowGQX	END=203698808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203698809	.	G	.	.	LowGQX	END=203698833	GT	./.
chr1	203702349	.	A	.	.	PASS	END=203702377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	203702378	.	G	.	.	PASS	END=203702399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	203702400	.	T	.	.	PASS	END=203702498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	203702499	.	T	.	.	PASS	END=203702527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	203702528	.	A	.	.	PASS	END=203702536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	203708672	.	A	.	.	PASS	END=203708770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	203708771	.	T	.	.	PASS	END=203708818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	203708819	.	A	.	.	PASS	END=203708917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	203708918	.	A	.	.	PASS	END=203708951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	203708952	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:60
chr1	203708953	.	T	.	.	PASS	END=203708970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	203708971	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:84:60
chr1	203708972	.	C	.	.	PASS	END=203708984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	203734441	.	A	.	.	LowGQX	END=203734540	GT	./.
chr1	203734689	.	A	.	.	LowGQX	END=203734788	GT	./.
chr1	203739954	.	A	.	.	LowGQX	END=203740067	GT	./.
chr1	203740493	.	A	.	.	LowGQX	END=203740607	GT	./.
chr1	203741186	.	G	.	.	LowGQX	END=203741285	GT	./.
chr1	203743001	.	A	.	.	LowGQX	END=203743718	GT	./.
chr1	203743719	.	C	.	.	LowGQX	END=203743811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203766650	.	A	.	.	LowGQX	END=203767695	GT	./.
chr1	203767696	.	G	.	.	LowGQX	END=203767874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203767875	.	C	.	.	LowGQX	END=203768026	GT	./.
chr1	203768027	.	G	.	.	LowGQX	END=203768065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768066	.	A	.	.	LowGQX	.	GT	./.
chr1	203768067	.	G	.	.	LowGQX	END=203768078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768079	.	A	.	.	LowGQX	.	GT	./.
chr1	203768080	.	G	.	.	LowGQX	END=203768084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768085	.	A	.	.	LowGQX	.	GT	./.
chr1	203768086	.	A	.	.	LowGQX	END=203768103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768104	.	A	.	.	LowGQX	.	GT	./.
chr1	203768105	.	C	.	.	LowGQX	END=203768229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768230	.	T	.	.	LowGQX	.	GT	./.
chr1	203768231	.	T	.	.	LowGQX	END=203768257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768258	.	A	.	.	LowGQX	END=203768273	GT	./.
chr1	203768274	.	G	.	.	LowGQX	END=203768314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768315	.	C	.	.	LowGQX	END=203768316	GT	./.
chr1	203768317	.	T	.	.	LowGQX	END=203768328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768329	.	T	.	.	LowGQX	.	GT	./.
chr1	203768330	.	C	.	.	LowGQX	END=203768340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768341	.	A	.	.	LowGQX	.	GT	./.
chr1	203768342	.	C	.	.	LowGQX	END=203768350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768351	.	T	.	.	LowGQX	.	GT	./.
chr1	203768352	.	A	.	.	LowGQX	END=203768357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768358	.	G	.	.	LowGQX	.	GT	./.
chr1	203768359	.	T	.	.	LowGQX	END=203768366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768367	.	A	.	.	LowGQX	.	GT	./.
chr1	203768368	.	T	.	.	LowGQX	END=203768417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768418	.	A	.	.	LowGQX	.	GT	./.
chr1	203768419	.	T	.	.	LowGQX	END=203768424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768425	.	T	.	.	LowGQX	END=203768614	GT	./.
chr1	203768615	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768616	.	A	.	.	LowGQX	END=203768618	GT	./.
chr1	203768619	.	T	.	.	LowGQX	END=203768622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768623	.	T	.	.	LowGQX	.	GT	./.
chr1	203768624	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768625	.	T	.	.	LowGQX	.	GT	./.
chr1	203768626	.	T	.	.	LowGQX	END=203768629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768630	.	G	.	.	LowGQX	.	GT	./.
chr1	203768631	.	C	.	.	LowGQX	END=203768640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768641	.	C	.	.	LowGQX	END=203768642	GT	./.
chr1	203768643	.	G	.	.	LowGQX	END=203768644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768645	.	T	.	.	LowGQX	.	GT	./.
chr1	203768646	.	C	.	.	LowGQX	END=203768649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768650	.	A	.	.	LowGQX	.	GT	./.
chr1	203768651	.	T	.	.	LowGQX	END=203768659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768660	.	T	.	.	LowGQX	.	GT	./.
chr1	203768661	.	A	.	.	LowGQX	END=203768666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768667	.	A	.	.	LowGQX	.	GT	./.
chr1	203768668	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768669	.	T	.	.	LowGQX	.	GT	./.
chr1	203768670	.	G	.	.	LowGQX	END=203768673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768674	.	T	.	.	LowGQX	.	GT	./.
chr1	203768675	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768676	.	G	.	.	LowGQX	.	GT	./.
chr1	203768677	.	T	.	.	LowGQX	END=203768679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768680	.	T	.	.	LowGQX	.	GT	./.
chr1	203768681	.	C	.	.	LowGQX	END=203768684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768685	.	T	.	.	LowGQX	.	GT	./.
chr1	203768686	.	C	.	.	LowGQX	END=203768691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768692	.	A	.	.	LowGQX	END=203768694	GT	./.
chr1	203768695	.	G	.	.	LowGQX	END=203768702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768703	.	A	.	.	LowGQX	END=203768704	GT	./.
chr1	203768705	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768706	.	A	.	.	LowGQX	.	GT	./.
chr1	203768707	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768708	.	T	.	.	LowGQX	.	GT	./.
chr1	203768709	.	T	.	.	LowGQX	END=203768712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768713	.	T	.	.	LowGQX	END=203768715	GT	./.
chr1	203768716	.	G	.	.	LowGQX	END=203768723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768724	.	C	.	.	LowGQX	.	GT	./.
chr1	203768725	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768726	.	T	.	.	LowGQX	.	GT	./.
chr1	203768727	.	A	.	.	LowGQX	END=203768729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768730	.	C	.	.	LowGQX	.	GT	./.
chr1	203768731	.	C	.	.	LowGQX	END=203768743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768744	.	T	.	.	LowGQX	.	GT	./.
chr1	203768745	.	A	.	.	LowGQX	END=203768751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768752	.	A	.	.	LowGQX	.	GT	./.
chr1	203768753	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768754	.	G	.	.	LowGQX	END=203768755	GT	./.
chr1	203768756	.	G	.	.	LowGQX	END=203768760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768761	.	T	.	.	LowGQX	.	GT	./.
chr1	203768762	.	G	.	.	LowGQX	END=203768763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768764	.	A	.	.	LowGQX	.	GT	./.
chr1	203768765	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203768766	.	A	.	.	LowGQX	END=203769245	GT	./.
chr1	203769246	.	G	.	.	LowGQX	END=203769390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	203769391	.	A	.	.	LowGQX	END=203769590	GT	./.
chr1	203786176	.	T	.	.	LowGQX	END=203786275	GT	./.
chr1	203787696	.	A	.	.	LowGQX	END=203787819	GT	./.
chr1	203797425	.	A	.	.	LowGQX	END=203797427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203797428	.	A	.	.	LowGQX	.	GT	./.
chr1	203797429	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203797430	.	A	.	.	LowGQX	.	GT	./.
chr1	203797431	.	A	.	.	LowGQX	END=203797432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203797433	.	C	.	.	LowGQX	.	GT	./.
chr1	203797434	.	G	.	.	LowGQX	END=203797436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203797437	.	G	.	.	LowGQX	END=203797438	GT	./.
chr1	203797439	.	G	.	.	LowGQX	END=203797453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203797454	.	T	.	.	LowGQX	.	GT	./.
chr1	203797455	.	G	.	.	LowGQX	END=203797458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203797459	.	A	.	.	LowGQX	.	GT	./.
chr1	203797460	.	A	.	.	LowGQX	END=203797462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203797463	.	C	.	.	LowGQX	END=203797464	GT	./.
chr1	203797465	.	G	.	.	LowGQX	END=203797467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203797468	.	A	.	.	LowGQX	END=203797469	GT	./.
chr1	203797470	.	C	.	.	LowGQX	END=203797487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203797488	.	A	.	.	LowGQX	.	GT	./.
chr1	203797489	.	C	.	.	LowGQX	END=203797496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203797497	.	T	.	.	LowGQX	.	GT	./.
chr1	203797498	.	C	.	.	LowGQX	END=203797504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203797505	.	A	.	.	LowGQX	END=203797506	GT	./.
chr1	203797507	.	T	.	.	LowGQX	END=203797511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203797512	.	G	.	.	LowGQX	END=203797552	GT	./.
chr1	203798577	.	A	.	.	LowGQX	END=203798622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203798623	.	G	.	.	LowGQX	END=203798624	GT	./.
chr1	203798625	.	T	.	.	LowGQX	END=203798649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203798650	.	A	.	.	LowGQX	.	GT	./.
chr1	203798651	.	A	.	.	LowGQX	END=203798658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203798659	.	G	.	.	LowGQX	.	GT	./.
chr1	203798660	.	T	.	.	LowGQX	END=203798662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203798663	.	A	.	.	LowGQX	END=203798784	GT	./.
chr1	203798906	.	A	.	.	LowGQX	END=203799026	GT	./.
chr1	203799189	.	C	.	.	LowGQX	END=203799341	GT	./.
chr1	203800787	.	A	.	.	LowGQX	END=203800901	GT	./.
chr1	203802901	.	C	.	.	LowGQX	END=203803000	GT	./.
chr1	203807092	.	A	.	.	LowGQX	END=203807194	GT	./.
chr1	203809419	.	T	.	.	LowGQX	END=203809518	GT	./.
chr1	203816310	.	A	.	.	LowGQX	END=203816817	GT	./.
chr1	203817448	.	T	.	.	LowGQX	END=203817492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203817493	.	T	.	.	LowGQX	END=203817547	GT	./.
chr1	203818837	.	A	.	.	LowGQX	END=203819156	GT	./.
chr1	203819582	.	T	.	.	LowGQX	END=203819811	GT	./.
chr1	203820169	.	A	.	.	LowGQX	END=203820209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203820210	.	A	.	.	LowGQX	END=203820268	GT	./.
chr1	203821267	.	A	.	.	LowGQX	END=203821529	GT	./.
chr1	203830765	.	T	.	.	LowGQX	END=203830864	GT	./.
chr1	203831288	.	T	.	.	LowGQX	END=203831348	GT	./.
chr1	203831349	.	A	.	.	LowGQX	END=203831377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203831378	.	C	.	.	LowGQX	.	GT	./.
chr1	203831379	.	T	.	.	LowGQX	END=203831387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203832773	.	C	.	.	LowGQX	END=203832834	GT	./.
chr1	203832835	.	G	.	.	LowGQX	END=203832872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203834159	.	A	.	.	LowGQX	END=203834202	GT	./.
chr1	203834203	.	A	.	.	LowGQX	END=203834258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	203838983	.	T	.	.	LowGQX	END=203839082	GT	./.
chr1	204006156	.	C	.	.	LowGQX	END=204006255	GT	./.
chr1	204006529	.	T	.	.	LowGQX	END=204006767	GT	./.
chr1	204009393	.	C	.	.	LowGQX	END=204009522	GT	./.
chr1	204010192	.	C	.	.	LowGQX	END=204010219	GT	./.
chr1	204010220	.	C	.	.	LowGQX	END=204010251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204010252	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	204010253	.	A	.	.	LowGQX	END=204010265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204010266	.	C	.	.	LowGQX	.	GT	./.
chr1	204010267	.	C	.	.	LowGQX	END=204010269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204010270	.	G	.	.	LowGQX	.	GT	./.
chr1	204010271	.	T	.	.	LowGQX	END=204010291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204082043	.	G	.	.	LowGQX	END=204082262	GT	./.
chr1	204083448	.	G	.	.	LowGQX	END=204083560	GT	./.
chr1	204083640	.	C	.	.	LowGQX	END=204083739	GT	./.
chr1	204085419	.	T	.	.	LowGQX	END=204085518	GT	./.
chr1	204085634	.	G	.	.	LowGQX	END=204085807	GT	./.
chr1	204086234	.	T	.	.	LowGQX	END=204086333	GT	./.
chr1	204086720	.	G	.	.	LowGQX	END=204086853	GT	./.
chr1	204086854	.	G	.	.	LowGQX	END=204086882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204090962	.	C	.	.	LowGQX	END=204091120	GT	./.
chr1	204091364	.	G	.	.	LowGQX	END=204091467	GT	./.
chr1	204091468	.	C	.	.	LowGQX	END=204091507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204091508	.	C	.	2.30	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:2:0:60:0
chr1	204091509	.	C	.	.	LowGQX	END=204091547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204091548	.	A	.	.	LowGQX	.	GT	./.
chr1	204091549	.	C	.	.	LowGQX	END=204091553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204091981	.	G	.	.	LowGQX	END=204092044	GT	./.
chr1	204092045	.	G	.	.	LowGQX	END=204092068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204092069	.	C	.	.	LowGQX	.	GT	./.
chr1	204092070	.	C	.	.	LowGQX	END=204092091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204092238	.	A	.	.	LowGQX	END=204092337	GT	./.
chr1	204092788	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204092789	.	G	.	.	LowGQX	.	GT	./.
chr1	204092790	.	C	.	.	LowGQX	END=204092797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204092798	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	204092799	.	C	.	.	LowGQX	END=204092800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	204092801	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	204092802	.	C	.	.	LowGQX	END=204092817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	204092818	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	204092819	.	G	.	.	LowGQX	END=204092825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	204092826	.	C	.	.	LowGQX	END=204092842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	204092843	.	A	.	8.18	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.02:60:0
chr1	204092844	.	C	.	.	LowGQX	END=204092854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	204092855	.	T	.	.	LowGQX	END=204092857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:60
chr1	204092858	.	G	.	.	LowGQX	END=204092892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	204092893	.	T	.	.	LowGQX	END=204092932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	204093768	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204093769	.	G	.	.	LowGQX	.	GT	./.
chr1	204093770	.	A	.	.	LowGQX	END=204093774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204093775	.	G	.	.	LowGQX	.	GT	./.
chr1	204093776	.	C	.	.	LowGQX	END=204093800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204093801	.	A	.	.	LowGQX	.	GT	./.
chr1	204093802	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204093803	.	G	.	.	LowGQX	.	GT	./.
chr1	204093804	.	C	.	.	LowGQX	END=204093805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204093806	.	G	.	.	LowGQX	.	GT	./.
chr1	204093807	.	C	.	.	LowGQX	END=204093837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204093838	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	204093839	.	G	.	.	LowGQX	END=204093861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	204093862	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	204093863	.	C	.	.	LowGQX	END=204093888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	204093889	.	G	.	36	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.01:60:6
chr1	204093890	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	204093891	.	A	.	.	LowGQX	END=204093897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	204093898	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	204093899	.	C	.	.	LowGQX	END=204093917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	204093918	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	204093919	.	G	.	.	LowGQX	END=204093920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	204093921	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	204093922	.	T	.	.	LowGQX	END=204093923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	204093924	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	204093925	.	G	.	.	LowGQX	END=204093939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204093940	.	T	.	.	LowGQX	END=204093941	GT	./.
chr1	204093942	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204093943	.	T	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	204093944	.	G	.	.	LowGQX	END=204093946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204093947	.	G	.	.	LowGQX	.	GT	./.
chr1	204093948	.	A	.	.	LowGQX	END=204093952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204093953	.	G	.	.	LowGQX	.	GT	./.
chr1	204093954	.	C	.	.	LowGQX	END=204093955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204093956	.	T	.	.	LowGQX	.	GT	./.
chr1	204093957	.	C	.	.	LowGQX	END=204093963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204093964	.	C	.	.	LowGQX	.	GT	./.
chr1	204093965	.	C	.	.	LowGQX	END=204093966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204093967	.	G	.	.	LowGQX	.	GT	./.
chr1	204093968	.	C	.	.	LowGQX	END=204093985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204094985	.	G	.	.	LowGQX	END=204095262	GT	./.
chr1	204101298	.	G	.	.	LowGQX	END=204101299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204101300	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	204101301	.	G	.	.	LowGQX	END=204101313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204101314	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	204101315	.	C	.	.	LowGQX	END=204101322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204101323	.	T	.	.	LowGQX	.	GT	./.
chr1	204101324	.	C	.	.	LowGQX	END=204101346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204101347	.	T	.	.	LowGQX	.	GT	./.
chr1	204101348	.	C	.	.	LowGQX	END=204101364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204101365	.	T	.	.	LowGQX	.	GT	./.
chr1	204101366	.	G	.	.	LowGQX	END=204101381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204101382	.	T	.	.	LowGQX	.	GT	./.
chr1	204101383	.	A	.	.	LowGQX	END=204101397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103622	.	C	.	.	LowGQX	END=204103626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204103627	.	T	.	.	LowGQX	END=204103629	GT	./.
chr1	204103630	.	C	.	.	LowGQX	END=204103634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103635	.	A	.	.	LowGQX	.	GT	./.
chr1	204103636	.	C	.	.	LowGQX	END=204103658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103659	.	C	.	.	LowGQX	.	GT	./.
chr1	204103660	.	G	.	.	LowGQX	END=204103661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103662	.	T	.	.	LowGQX	.	GT	./.
chr1	204103663	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103664	.	G	.	.	LowGQX	END=204103666	GT	./.
chr1	204103667	.	G	.	.	LowGQX	END=204103674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103675	.	G	.	.	LowGQX	.	GT	./.
chr1	204103676	.	T	.	.	LowGQX	END=204103678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103679	.	T	.	.	LowGQX	.	GT	./.
chr1	204103680	.	G	.	.	LowGQX	END=204103684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103685	.	A	.	.	LowGQX	END=204103687	GT	./.
chr1	204103688	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103689	.	C	.	.	LowGQX	.	GT	./.
chr1	204103690	.	C	.	.	LowGQX	END=204103691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103692	.	A	.	.	LowGQX	.	GT	./.
chr1	204103693	.	G	.	.	LowGQX	END=204103697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103698	.	C	.	.	LowGQX	END=204103701	GT	./.
chr1	204103702	.	G	.	.	LowGQX	END=204103705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103706	.	A	.	.	LowGQX	.	GT	./.
chr1	204103707	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103708	.	G	.	.	LowGQX	.	GT	./.
chr1	204103709	.	T	.	.	LowGQX	END=204103712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103713	.	A	.	.	LowGQX	.	GT	./.
chr1	204103714	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103715	.	G	.	.	LowGQX	.	GT	./.
chr1	204103716	.	C	.	.	LowGQX	END=204103717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103718	.	T	.	.	LowGQX	END=204103719	GT	./.
chr1	204103720	.	G	.	.	LowGQX	END=204103721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103722	.	A	.	.	LowGQX	.	GT	./.
chr1	204103723	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103724	.	C	.	.	LowGQX	.	GT	./.
chr1	204103725	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103726	.	G	.	.	LowGQX	.	GT	./.
chr1	204103727	.	A	.	.	LowGQX	END=204103728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103729	.	C	.	.	LowGQX	.	GT	./.
chr1	204103730	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103731	.	G	.	.	LowGQX	.	GT	./.
chr1	204103732	.	A	.	.	LowGQX	END=204103735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103736	.	G	.	.	LowGQX	.	GT	./.
chr1	204103737	.	G	.	.	LowGQX	END=204103740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103741	.	G	.	.	LowGQX	END=204103742	GT	./.
chr1	204103743	.	C	.	.	LowGQX	END=204103748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103749	.	A	.	.	LowGQX	END=204103750	GT	./.
chr1	204103751	.	C	.	.	LowGQX	END=204103756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103757	.	A	.	.	LowGQX	.	GT	./.
chr1	204103758	.	T	.	.	LowGQX	END=204103759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103760	.	C	.	.	LowGQX	END=204103763	GT	./.
chr1	204103764	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204103765	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	204103766	.	T	.	.	LowGQX	END=204103769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204103770	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	204103771	.	C	.	.	LowGQX	END=204103782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103783	.	G	.	.	LowGQX	.	GT	./.
chr1	204103784	.	G	.	.	LowGQX	END=204103787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103788	.	G	.	.	LowGQX	.	GT	./.
chr1	204103789	.	A	.	.	LowGQX	END=204103800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103801	.	T	.	.	LowGQX	END=204103802	GT	./.
chr1	204103803	.	G	.	.	LowGQX	END=204103804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103805	.	A	.	.	LowGQX	.	GT	./.
chr1	204103806	.	G	.	.	LowGQX	END=204103818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204103819	.	G	.	.	LowGQX	.	GT	./.
chr1	204103820	.	A	.	.	LowGQX	END=204103822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204106231	.	C	.	.	LowGQX	END=204106377	GT	./.
chr1	204109155	.	C	.	.	LowGQX	END=204109254	GT	./.
chr1	204110330	.	A	.	.	LowGQX	END=204110333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204110334	.	A	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	204110335	.	A	.	.	LowGQX	END=204110341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204110342	.	A	.	.	LowGQX	.	GT	./.
chr1	204110343	.	C	.	.	LowGQX	END=204110378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204110379	.	C	.	.	LowGQX	.	GT	./.
chr1	204110380	.	C	.	.	LowGQX	END=204110401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204110402	.	A	.	.	LowGQX	.	GT	./.
chr1	204110403	.	C	.	.	LowGQX	END=204110417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204110418	.	T	.	.	LowGQX	.	GT	./.
chr1	204110419	.	G	.	.	LowGQX	END=204110429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204110442	.	C	.	.	LowGQX	END=204110524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204110525	.	C	.	.	LowGQX	END=204110585	GT	./.
chr1	204115769	.	C	.	.	LowGQX	END=204115892	GT	./.
chr1	204115995	.	C	.	.	LowGQX	END=204116094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204116536	.	T	.	.	LowGQX	END=204116581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204116582	.	A	.	.	LowGQX	.	GT	./.
chr1	204116583	.	C	.	.	LowGQX	END=204116694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204116695	.	C	.	.	LowGQX	END=204116703	GT	./.
chr1	204118830	.	C	.	.	LowGQX	END=204119090	GT	./.
chr1	204120652	.	G	.	.	LowGQX	END=204121041	GT	./.
chr1	204124093	.	C	.	.	PASS	END=204124108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	204124109	.	G	.	.	PASS	END=204124141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	204124142	.	C	.	.	PASS	END=204124195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	204124196	.	T	.	.	PASS	END=204124241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	204124242	.	T	.	.	PASS	END=204124269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	204124270	.	G	.	.	PASS	END=204124295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	204124296	.	T	.	.	PASS	END=204124320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	204124321	.	A	.	.	PASS	END=204124350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	204124351	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:72:60
chr1	204124352	.	C	.	.	PASS	END=204124356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	204124897	.	T	.	.	PASS	END=204124949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	204124950	.	G	.	.	PASS	END=204124964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	204124965	.	C	.	.	PASS	END=204125037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	204125038	.	C	.	.	PASS	END=204125092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	204125093	.	C	T	1136.63	PASS	BaseQRankSum=1.582;DP=120;Dels=0.00;FS=7.850;HRun=1;HaplotypeScore=23.7780;MQ=60;MQ0=0;MQRankSum=0.446;QD=9.47;ReadPosRankSum=-0.244;SB=-674.98	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:69,51:120:99:1167,0,1646:60:99:0.425
chr1	204125094	.	A	.	.	PASS	END=204125097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	204125255	.	A	.	.	PASS	END=204125292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	204125293	.	T	.	.	PASS	END=204125368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	204125369	.	T	.	.	PASS	END=204125398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	204125399	.	T	.	.	PASS	END=204125428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	204125429	.	G	.	.	PASS	END=204125444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:81:60
chr1	204125445	.	A	.	.	PASS	END=204125454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	204125455	.	A	.	.	PASS	END=204125467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	204125468	.	A	.	.	PASS	END=204125471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr1	204125472	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:47:60
chr1	204125473	.	C	.	.	PASS	END=204125479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	204125480	.	A	.	.	PASS	END=204125483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	204125484	.	A	.	.	PASS	END=204125487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	204125488	.	A	.	.	PASS	END=204125496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	204125497	.	T	.	.	PASS	END=204125498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	204125754	.	C	.	.	PASS	END=204125820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	204125821	.	G	.	.	PASS	END=204125904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	204125905	.	C	.	.	PASS	END=204125938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	204125939	.	A	.	.	PASS	END=204125970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	204125971	.	C	.	.	PASS	END=204125975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:79:60
chr1	204126438	.	G	.	.	PASS	END=204126505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	204126506	.	A	.	.	PASS	END=204126562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	204128422	.	C	.	.	PASS	END=204128426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	204128427	.	T	.	.	PASS	END=204128447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	204128448	.	G	.	.	PASS	END=204128454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:77:60
chr1	204128455	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:42:60
chr1	204128456	.	C	.	.	PASS	END=204128463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:60
chr1	204128464	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:75:60
chr1	204128465	.	C	.	.	PASS	END=204128472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:78:60
chr1	204128473	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:51:18:60
chr1	204128474	.	T	.	.	PASS	END=204128478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:63:59
chr1	204128479	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:87:59
chr1	204128480	.	C	.	.	PASS	END=204128482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:48:59
chr1	204128483	.	C	.	.	PASS	END=204128485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:59
chr1	204128486	.	T	.	81.14	PASS	DP=35;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:27:35:51.14:60:51
chr1	204128487	.	C	.	.	PASS	END=204128488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	204128489	.	T	.	.	PASS	END=204128490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:54:60
chr1	204128491	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:45:60
chr1	204128492	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:69:60
chr1	204128493	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:37:27:60
chr1	204128494	.	C	.	.	PASS	END=204128497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	204128498	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:35:60
chr1	204128499	.	C	.	.	PASS	END=204128502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr1	204128503	.	A	.	.	PASS	END=204128505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:57:60
chr1	204128506	.	C	.	.	PASS	END=204128518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	204128519	.	G	.	.	PASS	END=204128538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	204128539	.	A	.	.	PASS	END=204128563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	204128564	.	C	.	.	PASS	END=204128677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	204128678	.	T	.	.	PASS	END=204128705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	204128706	.	C	.	.	PASS	END=204128716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	204128717	.	C	.	.	PASS	END=204128752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	204128753	.	G	.	.	PASS	END=204128772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	204128773	.	T	.	.	PASS	END=204128774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	204129637	.	C	.	.	PASS	END=204129657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	204129658	.	G	.	.	PASS	END=204129670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	204129671	.	A	C	1964.96	PASS	DP=67;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;QD=29.33;SB=-973.51	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,67:67:99:1998,153,0:60:99:1.000
chr1	204129672	.	G	.	.	PASS	END=204129695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	204129696	.	T	.	.	PASS	END=204129730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	204129731	.	G	.	.	PASS	END=204129803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	204129804	.	A	.	.	PASS	END=204129832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	204129833	.	T	.	.	PASS	END=204129853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	204129854	.	G	.	.	PASS	END=204129857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	204130369	.	C	.	.	LowGQX	END=204130370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	204130371	.	C	.	.	PASS	END=204130375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	204130376	.	G	C	169.60	SB	BaseQRankSum=0.225;DP=14;Dels=0.00;FS=7.404;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=1.222;QD=12.11;ReadPosRankSum=-0.386;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:6,8:14:99:200,0,163:60:99:0.571
chr1	204130377	.	G	.	.	PASS	END=204130381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	204130382	.	G	.	.	PASS	END=204130386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	204130387	.	T	.	.	PASS	END=204130390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	204130391	.	G	.	.	PASS	END=204130394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	204130395	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr1	204130396	.	G	.	.	PASS	END=204130401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	204130402	.	G	.	.	PASS	END=204130406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr1	204130407	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:33:60
chr1	204130408	.	C	.	.	PASS	END=204130413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	204130414	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:33:60
chr1	204130415	.	C	.	.	PASS	END=204130427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	204130428	.	G	.	.	PASS	END=204130435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr1	204130436	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:60:60
chr1	204130437	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:41:60
chr1	204130438	.	G	.	.	PASS	END=204130440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	204130441	.	T	.	.	PASS	END=204130448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:60:60
chr1	204130449	.	G	.	.	PASS	END=204130450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:75:60
chr1	204130451	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:39:60
chr1	204130452	.	G	.	.	PASS	END=204130453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:66:60
chr1	204130454	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:38:60
chr1	204130455	.	G	.	.	PASS	END=204130459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:63:60
chr1	204130460	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:30:60
chr1	204130461	.	C	.	.	PASS	END=204130466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:63:60
chr1	204130467	.	T	.	.	PASS	END=204130474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:75:60
chr1	204130475	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:54:60
chr1	204130476	.	C	.	.	PASS	END=204130496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:69:60
chr1	204130497	.	A	.	.	PASS	END=204130507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:63:60
chr1	204130508	.	T	.	.	PASS	END=204130517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:60:60
chr1	204130518	.	A	.	.	PASS	END=204130535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:54:60
chr1	204130536	.	T	.	.	PASS	END=204130542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:51:60
chr1	204130543	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:42:60
chr1	204130544	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:15:60
chr1	204130545	.	T	.	.	PASS	END=204130547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:42:60
chr1	204130548	.	G	.	.	PASS	END=204130551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:48:60
chr1	204130552	.	G	.	.	PASS	END=204130553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:36:60
chr1	204130554	.	A	.	.	PASS	END=204130559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:42:60
chr1	204130560	.	A	.	.	PASS	END=204130563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:39:60
chr1	204130564	.	G	.	.	PASS	END=204130565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:60
chr1	204130566	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chr1	204130567	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:1:60
chr1	204130568	.	G	.	.	PASS	END=204130569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	204130570	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chr1	204130571	.	G	.	.	PASS	END=204130574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chr1	204130575	.	C	.	.	PASS	END=204130577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:33:60
chr1	204130578	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:24:59
chr1	204130579	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:42:59
chr1	204130580	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:3:59
chr1	204130581	.	G	.	.	PASS	END=204130582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:59
chr1	204130583	.	A	.	.	PASS	END=204130584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:59
chr1	204130585	.	C	.	.	LowGQX	END=204130587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:59
chr1	204130588	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:59
chr1	204130589	.	G	.	.	LowGQX	END=204130590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:59
chr1	204130591	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:12:59
chr1	204130592	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:59
chr1	204130593	.	T	.	.	LowGQX	END=204130594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:59
chr1	204131090	.	C	.	.	PASS	END=204131115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	204131116	.	G	.	.	PASS	END=204131141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	204131142	.	T	.	.	PASS	END=204131202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	204131203	.	G	.	.	PASS	END=204131302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	204131303	.	T	.	.	PASS	END=204131342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	204135273	.	G	.	.	PASS	END=204135289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:78:60
chr1	204135290	.	C	.	.	PASS	END=204135294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	204135295	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:80:29:60
chr1	204135296	.	C	.	.	PASS	END=204135408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	204135409	.	T	.	.	PASS	END=204135429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	204135430	.	C	.	.	PASS	END=204135445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	204135446	.	C	.	.	PASS	END=204135472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	204159501	.	G	.	.	PASS	END=204159508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	204159509	.	C	.	.	PASS	END=204159512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:59
chr1	204159513	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:25:59
chr1	204159514	.	G	.	.	PASS	END=204159516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:59
chr1	204159517	.	C	.	.	PASS	END=204159521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:59
chr1	204159522	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:18:58
chr1	204159523	.	C	.	.	PASS	END=204159525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:57
chr1	204159526	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:27:57
chr1	204159527	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:48:57
chr1	204159528	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:33:57
chr1	204159529	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:48:57
chr1	204159530	.	C	.	.	PASS	END=204159531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:57
chr1	204159532	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:54:58
chr1	204159533	.	T	.	.	PASS	END=204159539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:33:57
chr1	204159540	.	C	.	.	PASS	END=204159541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:58
chr1	204159542	.	G	C	308.03	PASS	BaseQRankSum=1.866;DP=21;Dels=0.00;FS=0.000;HRun=6;HaplotypeScore=22.2392;MQ=58;MQ0=0;MQRankSum=0.810;QD=14.67;ReadPosRankSum=-0.246;SB=-156.80	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:10,11:21:99:338,0,169:58:99:0.524
chr1	204159543	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:45:58
chr1	204159544	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:15:58
chr1	204159545	.	C	.	.	PASS	END=204159548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:58
chr1	204159549	.	G	C	22.89	LowGQX;LowQD;SB	BaseQRankSum=-0.484;DP=24;Dels=0.00;FS=6.662;HRun=6;HaplotypeScore=25.3296;MQ=59;MQ0=0;MQRankSum=-1.155;QD=0.95;ReadPosRankSum=-1.379;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:18,5:24:52.86:53,0,459:59:23:0.217
chr1	204159550	.	C	.	.	PASS	END=204159558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:59
chr1	204159559	.	C	.	.	PASS	END=204159564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	204159565	.	C	.	.	PASS	END=204159576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	204159577	.	T	.	.	PASS	END=204159590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	204159591	.	C	.	.	PASS	END=204159611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	204159611	.	CT	C	1375.57	PASS	BaseQRankSum=1.640;DP=98;FS=4.017;HRun=1;HaplotypeScore=214.5163;MQ=60;MQ0=0;MQRankSum=0.051;QD=14.04;ReadPosRankSum=0.399;SB=-658.06	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:59,39:98:99:1415,0,2349:60:99:0.398
chr1	204159612	.	T	.	165.42	PASS	DP=98;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:59:59:99:60:99
chr1	204159613	.	C	.	.	PASS	END=204159637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	204159638	.	G	.	.	PASS	END=204159786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	204159787	.	G	C	1850.94	PASS	BaseQRankSum=3.191;DP=156;Dels=0.00;FS=3.014;HRun=0;HaplotypeScore=63.6546;MQ=60;MQ0=0;MQRankSum=1.163;QD=11.87;ReadPosRankSum=0.362;SB=-845.06	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:86,70:156:99:1881,0,2291:60:99:0.449
chr1	204159788	.	G	.	.	PASS	END=204159838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	204159839	.	G	.	.	PASS	END=204159967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	204159968	.	A	.	.	PASS	END=204159976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	204161851	.	T	.	.	PASS	END=204161858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	204161859	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:50:60
chr1	204161860	.	C	.	.	PASS	END=204161861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	204161862	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:48:60
chr1	204161863	.	A	.	.	PASS	END=204161879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	204161880	.	C	.	.	PASS	END=204161893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	204161894	.	A	.	.	PASS	END=204161916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	204161917	.	T	.	.	PASS	END=204161946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	204161947	.	C	.	.	PASS	END=204162032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	204162033	.	T	.	.	PASS	END=204162055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	204167504	.	C	.	.	LowGQX	END=204167655	GT	./.
chr1	204168300	.	G	.	.	LowGQX	END=204168399	GT	./.
chr1	204170759	.	A	.	.	LowGQX	END=204170913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204170914	.	A	.	.	LowGQX	END=204170941	GT	./.
chr1	204172020	.	T	.	.	LowGQX	END=204172033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204172034	.	G	.	.	LowGQX	.	GT	./.
chr1	204172035	.	C	.	.	LowGQX	END=204172086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204172087	.	G	.	.	LowGQX	.	GT	./.
chr1	204172088	.	C	.	.	LowGQX	END=204172102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204172103	.	C	.	.	LowGQX	.	GT	./.
chr1	204172104	.	C	.	.	LowGQX	END=204172119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204182973	.	C	.	.	LowGQX	END=204183072	GT	./.
chr1	204192555	.	C	.	.	LowGQX	END=204192601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204192602	.	A	.	.	LowGQX	.	GT	./.
chr1	204192603	.	C	.	.	LowGQX	END=204192612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204192613	.	A	.	.	LowGQX	.	GT	./.
chr1	204192614	.	T	.	.	LowGQX	END=204192644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204192645	.	A	.	.	LowGQX	.	GT	./.
chr1	204192646	.	C	.	.	LowGQX	END=204192659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204192660	.	C	.	.	LowGQX	END=204192661	GT	./.
chr1	204192662	.	G	.	.	LowGQX	END=204192663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204192664	.	A	.	.	LowGQX	END=204192697	GT	./.
chr1	204192698	.	G	.	.	LowGQX	END=204192701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204192702	.	T	.	.	LowGQX	.	GT	./.
chr1	204192703	.	G	.	.	LowGQX	END=204192715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204197169	.	T	.	.	LowGQX	END=204197358	GT	./.
chr1	204197854	.	A	.	.	LowGQX	END=204197991	GT	./.
chr1	204198063	.	A	.	.	LowGQX	END=204198070	GT	./.
chr1	204198071	.	A	.	.	LowGQX	END=204198093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204198094	.	G	.	.	LowGQX	.	GT	./.
chr1	204198095	.	G	.	.	LowGQX	END=204198111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204198112	.	T	.	.	LowGQX	.	GT	./.
chr1	204198113	.	G	.	.	LowGQX	END=204198231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204198232	.	C	.	.	LowGQX	.	GT	./.
chr1	204198233	.	C	.	.	LowGQX	END=204198234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204199539	.	A	.	.	LowGQX	END=204199716	GT	./.
chr1	204210447	.	A	.	.	LowGQX	END=204210611	GT	./.
chr1	204210811	.	A	.	.	LowGQX	END=204210838	GT	./.
chr1	204210839	.	G	.	.	LowGQX	END=204210848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204210849	.	C	.	.	LowGQX	.	GT	./.
chr1	204210850	.	T	.	.	LowGQX	END=204210891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204210892	.	G	.	.	LowGQX	.	GT	./.
chr1	204210893	.	G	.	.	LowGQX	END=204210898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204210899	.	G	.	.	LowGQX	.	GT	./.
chr1	204210900	.	T	.	.	LowGQX	END=204210904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204210905	.	T	.	.	LowGQX	.	GT	./.
chr1	204210906	.	G	.	.	LowGQX	END=204210914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204210915	.	T	.	.	LowGQX	.	GT	./.
chr1	204210916	.	C	.	.	LowGQX	END=204210920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204210921	.	T	.	.	LowGQX	.	GT	./.
chr1	204210922	.	T	.	.	LowGQX	END=204210926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204210927	.	C	.	.	LowGQX	.	GT	./.
chr1	204210928	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204210929	.	T	.	.	LowGQX	.	GT	./.
chr1	204210930	.	A	.	.	LowGQX	END=204210937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204210938	.	T	.	.	LowGQX	.	GT	./.
chr1	204210939	.	T	.	.	LowGQX	END=204210948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204210949	.	A	.	.	LowGQX	.	GT	./.
chr1	204210950	.	G	.	.	LowGQX	END=204210951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204210952	.	A	.	.	LowGQX	.	GT	./.
chr1	204210953	.	A	.	.	LowGQX	END=204210958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204210959	.	A	.	.	LowGQX	.	GT	./.
chr1	204210960	.	G	.	.	LowGQX	END=204210963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204210964	.	A	.	.	LowGQX	.	GT	./.
chr1	204210965	.	T	.	.	LowGQX	END=204210967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204210968	.	T	.	.	LowGQX	.	GT	./.
chr1	204210969	.	T	.	.	LowGQX	END=204210971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204210972	.	T	.	.	LowGQX	END=204210973	GT	./.
chr1	204210974	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204210975	.	T	.	.	LowGQX	END=204210976	GT	./.
chr1	204210977	.	G	.	.	LowGQX	END=204210981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204210982	.	G	.	.	LowGQX	END=204210983	GT	./.
chr1	204210984	.	T	.	.	LowGQX	END=204210986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204210987	.	C	.	.	LowGQX	.	GT	./.
chr1	204210988	.	A	.	.	LowGQX	END=204210989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204210990	.	G	.	.	LowGQX	END=204210999	GT	./.
chr1	204213959	.	C	.	.	LowGQX	END=204214169	GT	./.
chr1	204214741	.	A	.	.	LowGQX	END=204214856	GT	./.
chr1	204216491	.	A	.	.	LowGQX	END=204216590	GT	./.
chr1	204217947	.	A	.	.	LowGQX	END=204218100	GT	./.
chr1	204218303	.	G	.	.	LowGQX	END=204218402	GT	./.
chr1	204219659	.	G	.	.	LowGQX	END=204219739	GT	./.
chr1	204219740	.	G	.	.	LowGQX	END=204219758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204220649	.	G	.	.	LowGQX	END=204220748	GT	./.
chr1	204224731	.	A	.	.	LowGQX	END=204224830	GT	./.
chr1	204225923	.	G	.	.	LowGQX	END=204226022	GT	./.
chr1	204226479	.	A	.	.	LowGQX	END=204226940	GT	./.
chr1	204226941	.	G	.	.	LowGQX	END=204226957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204226958	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	204226959	.	T	.	.	LowGQX	END=204226963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204226964	.	G	.	.	LowGQX	.	GT	./.
chr1	204226965	.	A	.	.	LowGQX	END=204226969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204226970	.	G	.	.	LowGQX	.	GT	./.
chr1	204226971	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204226972	.	G	.	.	LowGQX	.	GT	./.
chr1	204226973	.	A	.	.	LowGQX	END=204226991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204226992	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	204226993	.	A	.	.	LowGQX	END=204226999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204228384	.	A	.	.	LowGQX	END=204228870	GT	./.
chr1	204230392	.	T	.	.	LowGQX	END=204230469	GT	./.
chr1	204230470	.	G	.	.	LowGQX	END=204230494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204230495	.	C	.	.	LowGQX	.	GT	./.
chr1	204230496	.	C	.	.	LowGQX	END=204230580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204230581	.	G	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	204230582	.	G	.	.	LowGQX	END=204230590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204230591	.	A	.	.	LowGQX	.	GT	./.
chr1	204230592	.	G	.	.	LowGQX	END=204230615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204230616	.	A	.	.	LowGQX	.	GT	./.
chr1	204230617	.	T	.	.	LowGQX	END=204230618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204230619	.	C	.	.	LowGQX	END=204230636	GT	./.
chr1	204234068	.	A	.	.	LowGQX	END=204234172	GT	./.
chr1	204236530	.	G	.	.	LowGQX	END=204236689	GT	./.
chr1	204237334	.	A	.	.	LowGQX	END=204237442	GT	./.
chr1	204242752	.	A	.	.	LowGQX	END=204242857	GT	./.
chr1	204375218	.	A	.	.	LowGQX	END=204375258	GT	./.
chr1	204375259	.	T	.	.	LowGQX	END=204375401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204375402	.	C	.	.	LowGQX	END=204375443	GT	./.
chr1	204378618	.	A	.	.	LowGQX	.	GT	./.
chr1	204378619	.	C	.	.	LowGQX	END=204378634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204378635	.	A	.	.	LowGQX	.	GT	./.
chr1	204378636	.	T	.	.	LowGQX	END=204378658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204378659	.	A	.	.	LowGQX	.	GT	./.
chr1	204378660	.	A	.	.	LowGQX	END=204378707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204378708	.	A	.	.	LowGQX	END=204379570	GT	./.
chr1	204379571	.	G	.	.	LowGQX	END=204379603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204379604	.	A	.	.	LowGQX	.	GT	./.
chr1	204379605	.	T	.	.	LowGQX	END=204379616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204379617	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	204379618	.	T	.	.	LowGQX	END=204379785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204379786	.	T	.	.	LowGQX	END=204380541	GT	./.
chr1	204393771	.	C	.	.	LowGQX	END=204393834	GT	./.
chr1	204393835	.	C	.	.	LowGQX	END=204393860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204393861	.	A	.	.	LowGQX	.	GT	./.
chr1	204393862	.	C	.	.	LowGQX	END=204393870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204393978	.	G	.	.	LowGQX	END=204394026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204394027	.	T	.	.	LowGQX	END=204394170	GT	./.
chr1	204394739	.	A	.	.	LowGQX	END=204394871	GT	./.
chr1	204396774	.	A	.	.	LowGQX	END=204396884	GT	./.
chr1	204397258	.	A	.	.	LowGQX	END=204397357	GT	./.
chr1	204397994	.	G	.	.	LowGQX	END=204398093	GT	./.
chr1	204399047	.	A	.	.	LowGQX	END=204399168	GT	./.
chr1	204400795	.	A	.	.	LowGQX	END=204400923	GT	./.
chr1	204401326	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401327	.	C	.	.	LowGQX	END=204401328	GT	./.
chr1	204401329	.	T	.	.	LowGQX	END=204401330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401331	.	G	.	.	LowGQX	.	GT	./.
chr1	204401332	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401333	.	C	.	.	LowGQX	.	GT	./.
chr1	204401334	.	T	.	.	LowGQX	END=204401357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401358	.	A	.	.	LowGQX	.	GT	./.
chr1	204401359	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401360	.	G	.	.	LowGQX	END=204401361	GT	./.
chr1	204401362	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401363	.	G	.	.	LowGQX	END=204401364	GT	./.
chr1	204401365	.	C	.	.	LowGQX	END=204401378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401379	.	A	.	.	LowGQX	END=204401380	GT	./.
chr1	204401381	.	T	.	.	LowGQX	END=204401388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401389	.	C	.	.	LowGQX	.	GT	./.
chr1	204401390	.	C	.	.	LowGQX	END=204401393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401394	.	G	.	.	LowGQX	.	GT	./.
chr1	204401395	.	C	.	.	LowGQX	END=204401398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401399	.	T	.	.	LowGQX	.	GT	./.
chr1	204401400	.	G	.	.	LowGQX	END=204401404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401405	.	T	.	.	LowGQX	.	GT	./.
chr1	204401406	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401407	.	T	.	.	LowGQX	.	GT	./.
chr1	204401408	.	G	.	.	LowGQX	END=204401412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401413	.	C	.	.	LowGQX	END=204401414	GT	./.
chr1	204401415	.	G	.	.	LowGQX	END=204401416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401417	.	A	.	.	LowGQX	.	GT	./.
chr1	204401418	.	G	.	.	LowGQX	END=204401419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401420	.	C	.	.	LowGQX	END=204401421	GT	./.
chr1	204401422	.	A	.	.	LowGQX	END=204401423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401424	.	G	.	.	LowGQX	.	GT	./.
chr1	204401425	.	G	.	.	LowGQX	END=204401426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401427	.	G	.	.	LowGQX	.	GT	./.
chr1	204401428	.	A	.	.	LowGQX	END=204401435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401436	.	C	.	.	LowGQX	.	GT	./.
chr1	204401437	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401438	.	G	.	.	LowGQX	.	GT	./.
chr1	204401439	.	G	.	.	LowGQX	END=204401444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401445	.	T	.	.	LowGQX	.	GT	./.
chr1	204401446	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401447	.	A	.	.	LowGQX	.	GT	./.
chr1	204401448	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401449	.	C	.	.	LowGQX	.	GT	./.
chr1	204401450	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401451	.	C	.	.	LowGQX	END=204401452	GT	./.
chr1	204401453	.	T	.	.	LowGQX	END=204401455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401456	.	A	.	.	LowGQX	END=204401457	GT	./.
chr1	204401458	.	T	.	.	LowGQX	END=204401461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401462	.	T	.	.	LowGQX	END=204401464	GT	./.
chr1	204401465	.	G	.	.	LowGQX	END=204401466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401467	.	G	.	.	LowGQX	END=204401468	GT	./.
chr1	204401469	.	C	.	.	LowGQX	END=204401471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204401472	.	A	.	.	LowGQX	END=204401531	GT	./.
chr1	204402442	.	A	.	.	LowGQX	END=204402555	GT	./.
chr1	204402919	.	A	.	.	LowGQX	END=204403079	GT	./.
chr1	204403545	.	C	.	.	LowGQX	END=204403645	GT	./.
chr1	204403646	.	G	.	.	LowGQX	END=204403658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204403659	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	204403660	.	T	.	.	LowGQX	END=204403738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204408061	.	A	.	.	LowGQX	END=204408174	GT	./.
chr1	204408175	.	G	.	.	LowGQX	END=204408201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204409287	.	C	.	.	LowGQX	END=204409451	GT	./.
chr1	204410596	.	C	.	.	LowGQX	END=204410695	GT	./.
chr1	204411652	.	A	.	.	LowGQX	END=204411654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204411655	.	C	.	.	LowGQX	.	GT	./.
chr1	204411656	.	T	.	.	LowGQX	END=204411664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204411665	.	T	.	.	LowGQX	.	GT	./.
chr1	204411666	.	T	.	.	LowGQX	END=204411673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204411674	.	C	.	.	LowGQX	.	GT	./.
chr1	204411675	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204411676	.	A	.	.	LowGQX	.	GT	./.
chr1	204411677	.	G	.	.	LowGQX	END=204411680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204411681	.	A	.	.	LowGQX	.	GT	./.
chr1	204411682	.	C	.	.	LowGQX	END=204411684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204411685	.	G	.	.	LowGQX	.	GT	./.
chr1	204411686	.	G	.	.	LowGQX	END=204411695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204411696	.	C	.	.	LowGQX	.	GT	./.
chr1	204411697	.	A	.	.	LowGQX	END=204411710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204411711	.	A	.	.	LowGQX	.	GT	./.
chr1	204411712	.	T	.	.	LowGQX	END=204411736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204411737	.	C	.	.	LowGQX	END=204411763	GT	./.
chr1	204412543	.	A	.	.	LowGQX	END=204412551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204412552	.	G	.	.	LowGQX	.	GT	./.
chr1	204412553	.	C	.	.	LowGQX	END=204412578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204412579	.	T	.	.	LowGQX	END=204412580	GT	./.
chr1	204412581	.	G	.	.	LowGQX	END=204412614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204412615	.	T	.	.	LowGQX	END=204412727	GT	./.
chr1	204413194	.	A	.	.	LowGQX	END=204413293	GT	./.
chr1	204413456	.	C	.	.	LowGQX	END=204413549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204413550	.	A	.	.	LowGQX	.	GT	./.
chr1	204413551	.	A	.	.	LowGQX	END=204413555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204415082	.	A	.	.	LowGQX	END=204415169	GT	./.
chr1	204415170	.	C	.	.	LowGQX	END=204415174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204415175	.	A	.	.	LowGQX	.	GT	./.
chr1	204415176	.	G	.	.	LowGQX	END=204415219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204415220	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	204415221	.	G	.	.	LowGQX	END=204415224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204415225	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	204415226	.	A	.	.	LowGQX	END=204415253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204415254	.	C	.	.	LowGQX	.	GT	./.
chr1	204415255	.	T	.	.	LowGQX	END=204415258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204415259	.	C	.	.	LowGQX	END=204415260	GT	./.
chr1	204415261	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	204415262	.	C	.	.	LowGQX	END=204415274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204416562	.	A	.	.	LowGQX	END=204416708	GT	./.
chr1	204418311	.	A	.	.	LowGQX	END=204418426	GT	./.
chr1	204418976	.	A	.	.	LowGQX	END=204419147	GT	./.
chr1	204423793	.	T	.	.	LowGQX	END=204423921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204424982	.	A	.	.	LowGQX	END=204424984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204424985	.	T	.	.	LowGQX	.	GT	./.
chr1	204424986	.	G	.	.	LowGQX	END=204425044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204425045	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	204425046	.	G	.	.	LowGQX	END=204425091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204425092	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	204425093	.	C	.	.	LowGQX	END=204425100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204425101	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	204425102	.	G	.	.	LowGQX	END=204425112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204425113	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	204425114	.	T	.	.	LowGQX	END=204425121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204425122	.	T	.	.	LowGQX	.	GT	./.
chr1	204425123	.	T	.	.	LowGQX	END=204425139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204425140	.	A	.	.	LowGQX	END=204425181	GT	./.
chr1	204426132	.	C	.	.	LowGQX	END=204426231	GT	./.
chr1	204426854	.	A	.	.	LowGQX	END=204427016	GT	./.
chr1	204427017	.	A	.	.	LowGQX	END=204427033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204428988	.	C	.	.	LowGQX	END=204429027	GT	./.
chr1	204429028	.	A	.	.	LowGQX	END=204429087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204429442	.	C	.	.	LowGQX	END=204429533	GT	./.
chr1	204429534	.	G	.	.	LowGQX	END=204429541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204429676	.	A	.	.	LowGQX	END=204429688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204429689	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	204429690	.	G	.	.	LowGQX	END=204429713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204429714	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	204429715	.	A	.	.	LowGQX	END=204429734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	204429735	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	204429736	.	A	.	.	LowGQX	END=204429737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	204429738	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	204429739	.	T	.	.	LowGQX	END=204429747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	204429748	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	204429749	.	G	.	.	LowGQX	END=204429750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204429751	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	204429752	.	A	.	.	LowGQX	END=204429765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204429766	.	T	.	.	LowGQX	.	GT	./.
chr1	204429767	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204429768	.	A	.	.	LowGQX	.	GT	./.
chr1	204429769	.	T	.	.	LowGQX	END=204429774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204429775	.	C	.	.	LowGQX	.	GT	./.
chr1	204429776	.	C	.	.	LowGQX	END=204429778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204429779	.	A	.	.	LowGQX	.	GT	./.
chr1	204429780	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204429781	.	G	.	.	LowGQX	.	GT	./.
chr1	204429782	.	C	.	.	LowGQX	END=204429784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204429785	.	G	.	.	LowGQX	END=204429786	GT	./.
chr1	204429787	.	T	.	.	LowGQX	END=204429788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204429789	.	G	.	.	LowGQX	END=204429790	GT	./.
chr1	204429791	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204433138	.	A	.	.	LowGQX	END=204433193	GT	./.
chr1	204433194	.	A	.	.	LowGQX	END=204433262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204433576	.	A	.	.	LowGQX	END=204433687	GT	./.
chr1	204433688	.	T	.	.	LowGQX	END=204433734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204434345	.	A	.	.	LowGQX	END=204434449	GT	./.
chr1	204435898	.	C	.	.	LowGQX	END=204436007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204436008	.	T	.	.	LowGQX	.	GT	./.
chr1	204436009	.	C	.	.	LowGQX	END=204436088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204436089	.	C	.	.	LowGQX	END=204436165	GT	./.
chr1	204437996	.	A	.	.	LowGQX	END=204438010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438011	.	A	.	.	LowGQX	.	GT	./.
chr1	204438012	.	T	.	.	LowGQX	END=204438027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438028	.	A	.	.	LowGQX	.	GT	./.
chr1	204438029	.	G	.	.	LowGQX	END=204438038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438039	.	T	.	.	LowGQX	.	GT	./.
chr1	204438040	.	C	.	.	LowGQX	END=204438041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438042	.	T	.	.	LowGQX	END=204438043	GT	./.
chr1	204438044	.	C	.	.	LowGQX	END=204438046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438047	.	T	.	.	LowGQX	END=204438048	GT	./.
chr1	204438049	.	G	.	.	LowGQX	END=204438050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438051	.	C	.	.	LowGQX	.	GT	./.
chr1	204438052	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438053	.	T	.	.	LowGQX	END=204438054	GT	./.
chr1	204438055	.	G	.	.	LowGQX	END=204438059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438060	.	A	.	.	LowGQX	.	GT	./.
chr1	204438061	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438062	.	G	.	.	LowGQX	.	GT	./.
chr1	204438063	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438064	.	A	.	.	LowGQX	.	GT	./.
chr1	204438065	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438066	.	A	.	.	LowGQX	.	GT	./.
chr1	204438067	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438068	.	G	.	.	LowGQX	END=204438070	GT	./.
chr1	204438071	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438072	.	G	.	.	LowGQX	.	GT	./.
chr1	204438073	.	G	.	.	LowGQX	END=204438074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438075	.	G	.	.	LowGQX	.	GT	./.
chr1	204438076	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438077	.	G	.	.	LowGQX	END=204438078	GT	./.
chr1	204438079	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438080	.	A	.	.	LowGQX	END=204438081	GT	./.
chr1	204438082	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438083	.	T	.	.	LowGQX	.	GT	./.
chr1	204438084	.	G	.	.	LowGQX	END=204438087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438088	.	G	.	.	LowGQX	END=204438090	GT	./.
chr1	204438091	.	C	.	.	LowGQX	END=204438093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438094	.	A	.	.	LowGQX	.	GT	./.
chr1	204438095	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438096	.	T	.	.	LowGQX	.	GT	./.
chr1	204438097	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438098	.	T	.	.	LowGQX	.	GT	./.
chr1	204438099	.	T	.	.	LowGQX	END=204438100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438101	.	C	.	.	LowGQX	.	GT	./.
chr1	204438102	.	T	.	.	LowGQX	END=204438114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438115	.	T	.	.	LowGQX	.	GT	./.
chr1	204438116	.	T	.	.	LowGQX	END=204438125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438126	.	T	.	.	LowGQX	.	GT	./.
chr1	204438127	.	G	.	.	LowGQX	END=204438129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438130	.	T	.	.	LowGQX	.	GT	./.
chr1	204438131	.	T	.	.	LowGQX	END=204438135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438136	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	204438137	.	A	.	.	LowGQX	END=204438176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204438177	.	C	.	.	LowGQX	END=204438932	GT	./.
chr1	204494636	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:72:99:60
chr1	204494637	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:71:74:60
chr1	204494638	.	A	.	.	PASS	END=204494679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:94:60
chr1	204494680	.	A	.	.	PASS	END=204494713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	204494714	.	A	.	.	PASS	END=204494735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	204495476	.	T	.	.	PASS	END=204495557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	204495558	.	A	.	.	PASS	END=204495571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	204495572	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:50:60
chr1	204495573	.	A	.	.	PASS	END=204495575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	204499810	.	A	.	.	PASS	END=204499821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	204499822	.	A	.	.	PASS	END=204499838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	204499839	.	A	.	.	PASS	END=204499871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	204499872	.	C	.	.	PASS	END=204499932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	204499933	.	T	.	.	PASS	END=204499947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	204501297	.	T	.	.	PASS	END=204501322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	204501323	.	C	.	.	PASS	END=204501382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	204501383	.	C	T	1032.49	PASS	BaseQRankSum=4.399;DP=107;Dels=0.00;FS=1.613;HRun=0;HaplotypeScore=3.8404;MQ=60;MQ0=0;MQRankSum=0.839;QD=9.65;ReadPosRankSum=1.751;SB=-614.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:65,42:107:99:1062,0,1676:60:99:0.393
chr1	204501384	.	A	.	.	PASS	END=204501396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	204501872	.	T	.	.	LowGQX	END=204501971	GT	./.
chr1	204505997	.	A	.	.	LowGQX	END=204506096	GT	./.
chr1	204506542	.	T	.	.	PASS	END=204506567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:81:60
chr1	204506568	.	G	.	.	PASS	END=204506641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	204507031	.	T	.	.	LowGQX	END=204507043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	204507044	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	204507045	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	204507046	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	204507047	.	T	.	.	LowGQX	END=204507049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	204507050	.	T	.	.	LowGQX	END=204507051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	204507052	.	T	.	.	LowGQX	END=204507056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	204507057	.	G	.	.	LowGQX	END=204507066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	204507067	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:60
chr1	204507068	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr1	204507069	.	G	.	.	LowGQX	END=204507070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	204507071	.	T	.	.	LowGQX	END=204507073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	204507074	.	T	.	.	LowGQX	END=204507076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	204507077	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:60
chr1	204507078	.	G	.	.	LowGQX	END=204507083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	204507084	.	C	.	.	LowGQX	END=204507085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	204507086	.	G	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	204507087	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	204507088	.	T	.	.	LowGQX	END=204507090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	204507091	.	T	.	.	LowGQX	END=204507096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	204507097	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	204507098	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	204507099	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	204507100	.	A	.	.	LowGQX	END=204507105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	204507106	.	G	.	.	LowGQX	END=204507107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	204507108	.	C	.	.	LowGQX	END=204507109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	204507110	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	204507111	.	T	.	.	LowGQX	END=204507115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	204507116	.	A	.	.	LowGQX	END=204507128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	204507129	.	C	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:4:12.04:60:12
chr1	204507130	.	C	.	4.58	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.01:60:0
chr1	204507335	.	A	.	.	PASS	END=204507409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	204507410	.	A	.	.	PASS	END=204507427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	204507428	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:77:45:60
chr1	204507429	.	T	.	.	PASS	END=204507438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	204511910	.	A	.	.	PASS	END=204512035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	204512036	.	T	.	.	PASS	END=204512074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	204513661	.	A	.	.	PASS	END=204513706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	204513707	.	G	.	.	PASS	END=204513723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	204513724	.	T	.	.	PASS	END=204513779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	204513780	.	A	.	.	PASS	END=204513814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	204515916	.	C	.	.	PASS	END=204516001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	204516002	.	T	.	.	PASS	END=204516015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	204518239	.	A	.	.	PASS	END=204518250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	204518251	.	A	.	.	PASS	END=204518321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	204518322	.	G	.	.	PASS	END=204518472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	204518473	.	A	.	.	PASS	END=204518522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	204518523	.	G	.	.	PASS	END=204518630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	204518631	.	A	.	.	PASS	END=204518722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	204518723	.	C	.	.	PASS	END=204518759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	204518760	.	C	.	.	PASS	END=204518806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	204518807	.	A	.	.	PASS	END=204518812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	204527739	.	C	.	.	LowGQX	END=204527838	GT	./.
chr1	204586973	.	T	.	.	LowGQX	.	GT	./.
chr1	204586974	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	204586975	.	A	.	.	LowGQX	END=204586996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204586997	.	T	.	.	LowGQX	.	GT	./.
chr1	204586998	.	G	.	.	LowGQX	END=204587004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204587005	.	A	.	.	LowGQX	.	GT	./.
chr1	204587006	.	C	.	.	LowGQX	END=204587013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204587014	.	C	.	.	LowGQX	.	GT	./.
chr1	204587015	.	C	.	.	LowGQX	END=204587016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204587017	.	C	.	.	LowGQX	.	GT	./.
chr1	204587018	.	T	.	.	LowGQX	END=204587046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204587047	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	204587048	.	A	.	.	LowGQX	END=204587051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204587052	.	C	.	.	LowGQX	.	GT	./.
chr1	204587053	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	204587054	.	G	.	.	LowGQX	END=204587067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204587068	.	G	.	.	LowGQX	END=204587077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	204587078	.	A	.	.	LowGQX	END=204587087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204587088	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	204587089	.	A	.	.	LowGQX	END=204587096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	204587097	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	204587098	.	T	.	.	LowGQX	END=204587099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	204587100	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	204587101	.	A	.	.	LowGQX	END=204587103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	204587104	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	204587105	.	C	.	.	LowGQX	END=204587109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	204587110	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	204587111	.	A	.	.	LowGQX	END=204587114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	204587115	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	204587116	.	A	.	.	LowGQX	END=204587141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	204587142	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	204587143	.	C	.	.	LowGQX	END=204587169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	204587170	.	C	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	204587171	.	A	.	10.71	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.05:60:0
chr1	204587172	.	A	.	.	LowGQX	END=204587215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	204587216	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	204587217	.	A	.	.	LowGQX	END=204587239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204587240	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	204587241	.	T	.	.	LowGQX	END=204587270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204587271	.	T	.	.	LowGQX	.	GT	./.
chr1	204587272	.	C	.	.	LowGQX	END=204587311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204587312	.	A	.	.	LowGQX	END=204587632	GT	./.
chr1	204587633	.	G	.	.	LowGQX	END=204587667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204587668	.	G	.	.	LowGQX	.	GT	./.
chr1	204587669	.	C	.	.	LowGQX	END=204587715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204587716	.	G	.	.	LowGQX	.	GT	./.
chr1	204587717	.	G	.	.	LowGQX	END=204587732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204587733	.	A	.	.	LowGQX	.	GT	./.
chr1	204587734	.	G	.	.	LowGQX	END=204587788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204587789	.	A	.	.	LowGQX	.	GT	./.
chr1	204587790	.	T	.	.	LowGQX	END=204587802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204587803	.	T	.	.	LowGQX	.	GT	./.
chr1	204587804	.	C	.	.	LowGQX	END=204587825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204587826	.	C	.	.	LowGQX	.	GT	./.
chr1	204587827	.	T	.	.	LowGQX	END=204587835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204587836	.	A	.	.	LowGQX	.	GT	./.
chr1	204587837	.	G	.	.	LowGQX	END=204587842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204587843	.	T	.	.	LowGQX	.	GT	./.
chr1	204587844	.	G	.	.	LowGQX	END=204587850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204587851	.	T	.	.	LowGQX	.	GT	./.
chr1	204587852	.	G	.	.	LowGQX	END=204587883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204587884	.	A	.	.	LowGQX	END=204589124	GT	./.
chr1	204840139	.	C	.	.	LowGQX	END=204840238	GT	./.
chr1	204889760	.	G	.	.	LowGQX	END=204889868	GT	./.
chr1	204913294	.	T	.	.	LowGQX	END=204913536	GT	./.
chr1	204915399	.	G	.	.	LowGQX	END=204915498	GT	./.
chr1	204915795	.	A	.	.	LowGQX	END=204915815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204915816	.	A	.	.	LowGQX	END=204915894	GT	./.
chr1	204917733	.	A	.	.	LowGQX	END=204917832	GT	./.
chr1	204919644	.	T	.	.	LowGQX	END=204919743	GT	./.
chr1	204921135	.	G	.	.	LowGQX	END=204921246	GT	./.
chr1	204923303	.	C	.	.	LowGQX	END=204923522	GT	./.
chr1	204923955	.	A	.	.	LowGQX	END=204923980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204923981	.	A	.	.	LowGQX	.	GT	./.
chr1	204923982	.	C	.	.	LowGQX	END=204924005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204924006	.	G	.	.	LowGQX	END=204924081	GT	./.
chr1	204926782	.	A	.	.	LowGQX	END=204926956	GT	./.
chr1	204931212	.	C	.	.	LowGQX	END=204931235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204931236	.	A	.	.	LowGQX	.	GT	./.
chr1	204931237	.	C	.	.	LowGQX	END=204931238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204931239	.	A	.	.	LowGQX	.	GT	./.
chr1	204931240	.	C	.	.	LowGQX	END=204931311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204937375	.	A	.	.	LowGQX	END=204937418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204937419	.	A	.	.	LowGQX	END=204937490	GT	./.
chr1	204937924	.	A	.	.	LowGQX	END=204938112	GT	./.
chr1	204939742	.	A	.	.	LowGQX	END=204939828	GT	./.
chr1	204939829	.	C	.	.	LowGQX	END=204939877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204942402	.	A	.	.	LowGQX	END=204942480	GT	./.
chr1	204942481	.	G	.	.	LowGQX	END=204942549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204943305	.	A	.	.	LowGQX	END=204943422	GT	./.
chr1	204943696	.	C	.	.	LowGQX	END=204943953	GT	./.
chr1	204944397	.	A	.	.	LowGQX	END=204944451	GT	./.
chr1	204944452	.	A	.	.	LowGQX	END=204944454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944455	.	G	.	.	LowGQX	END=204944456	GT	./.
chr1	204944457	.	G	.	.	LowGQX	END=204944473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944474	.	T	.	.	LowGQX	.	GT	./.
chr1	204944475	.	G	.	.	LowGQX	END=204944479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944480	.	A	.	.	LowGQX	END=204944481	GT	./.
chr1	204944482	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944483	.	A	.	.	LowGQX	.	GT	./.
chr1	204944484	.	C	.	.	LowGQX	END=204944488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944489	.	C	.	.	LowGQX	END=204944490	GT	./.
chr1	204944491	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944492	.	T	.	.	LowGQX	.	GT	./.
chr1	204944493	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944494	.	A	.	.	LowGQX	.	GT	./.
chr1	204944495	.	A	.	.	LowGQX	END=204944499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944500	.	A	.	.	LowGQX	.	GT	./.
chr1	204944501	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944502	.	C	.	.	LowGQX	.	GT	./.
chr1	204944503	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944504	.	T	.	.	LowGQX	.	GT	./.
chr1	204944505	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944506	.	T	.	.	LowGQX	.	GT	./.
chr1	204944507	.	C	.	.	LowGQX	END=204944512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944513	.	T	.	.	LowGQX	.	GT	./.
chr1	204944514	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944515	.	A	.	.	LowGQX	.	GT	./.
chr1	204944516	.	A	.	.	LowGQX	END=204944520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944521	.	G	.	.	LowGQX	END=204944522	GT	./.
chr1	204944523	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944524	.	G	.	.	LowGQX	.	GT	./.
chr1	204944525	.	A	.	.	LowGQX	END=204944530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944531	.	T	.	.	LowGQX	.	GT	./.
chr1	204944532	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944533	.	T	.	.	LowGQX	.	GT	./.
chr1	204944534	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944535	.	T	.	.	LowGQX	.	GT	./.
chr1	204944536	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944537	.	T	.	.	LowGQX	END=204944538	GT	./.
chr1	204944539	.	G	.	.	LowGQX	END=204944540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204944541	.	A	.	.	LowGQX	.	GT	./.
chr1	204944542	.	A	.	.	LowGQX	END=204944543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204944544	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	204944545	.	A	.	.	LowGQX	END=204944548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204945797	.	A	.	.	LowGQX	END=204945811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945812	.	G	.	.	LowGQX	.	GT	./.
chr1	204945813	.	A	.	.	LowGQX	END=204945815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945816	.	A	.	.	LowGQX	.	GT	./.
chr1	204945817	.	C	.	.	LowGQX	END=204945819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945820	.	C	.	.	LowGQX	.	GT	./.
chr1	204945821	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945822	.	T	.	.	LowGQX	END=204945824	GT	./.
chr1	204945825	.	C	.	.	LowGQX	END=204945827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945828	.	T	.	.	LowGQX	.	GT	./.
chr1	204945829	.	C	.	.	LowGQX	END=204945830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945831	.	T	.	.	LowGQX	.	GT	./.
chr1	204945832	.	T	.	.	LowGQX	END=204945835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945836	.	G	.	.	LowGQX	.	GT	./.
chr1	204945837	.	T	.	.	LowGQX	END=204945838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945839	.	G	.	.	LowGQX	END=204945840	GT	./.
chr1	204945841	.	A	.	.	LowGQX	END=204945842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945843	.	A	.	.	LowGQX	.	GT	./.
chr1	204945844	.	G	.	.	LowGQX	END=204945845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945846	.	G	.	.	LowGQX	.	GT	./.
chr1	204945847	.	G	.	.	LowGQX	END=204945848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945849	.	A	.	.	LowGQX	.	GT	./.
chr1	204945850	.	C	.	.	LowGQX	END=204945852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945853	.	G	.	.	LowGQX	END=204945854	GT	./.
chr1	204945855	.	G	.	.	LowGQX	END=204945858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945859	.	T	.	.	LowGQX	.	GT	./.
chr1	204945860	.	T	.	.	LowGQX	END=204945874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945875	.	A	.	.	LowGQX	.	GT	./.
chr1	204945876	.	G	.	.	LowGQX	END=204945877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945878	.	A	.	.	LowGQX	.	GT	./.
chr1	204945879	.	C	.	.	LowGQX	END=204945891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945892	.	A	.	.	LowGQX	.	GT	./.
chr1	204945893	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945894	.	A	.	.	LowGQX	.	GT	./.
chr1	204945895	.	C	.	.	LowGQX	END=204945896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945897	.	T	.	.	LowGQX	.	GT	./.
chr1	204945898	.	G	.	.	LowGQX	END=204945899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945900	.	C	.	.	LowGQX	.	GT	./.
chr1	204945901	.	C	.	.	LowGQX	END=204945907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945908	.	T	.	.	LowGQX	.	GT	./.
chr1	204945909	.	A	.	.	LowGQX	END=204945911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945912	.	T	.	.	LowGQX	.	GT	./.
chr1	204945913	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945914	.	A	.	.	LowGQX	.	GT	./.
chr1	204945915	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204945916	.	C	.	.	LowGQX	.	GT	./.
chr1	204945917	.	G	.	.	LowGQX	END=204945952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204946781	.	A	.	.	LowGQX	END=204946783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204946784	.	T	.	.	LowGQX	END=204946786	GT	./.
chr1	204946787	.	A	.	.	LowGQX	END=204946792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204946793	.	C	.	.	LowGQX	END=204946794	GT	./.
chr1	204946795	.	T	.	.	LowGQX	END=204946804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204946805	.	G	.	.	LowGQX	.	GT	./.
chr1	204946806	.	C	.	.	LowGQX	END=204946829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204946830	.	A	.	.	LowGQX	.	GT	./.
chr1	204946831	.	C	.	.	LowGQX	END=204946860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204946861	.	C	.	.	LowGQX	.	GT	./.
chr1	204946862	.	C	.	.	LowGQX	END=204946872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204946873	.	G	.	.	LowGQX	.	GT	./.
chr1	204946874	.	T	.	.	LowGQX	END=204946880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204948094	.	A	.	.	LowGQX	END=204948199	GT	./.
chr1	204948488	.	A	.	.	LowGQX	END=204948503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204948504	.	T	.	.	LowGQX	END=204948689	GT	./.
chr1	204949426	.	C	.	.	LowGQX	END=204949583	GT	./.
chr1	204950924	.	A	.	.	LowGQX	END=204951018	GT	./.
chr1	204951019	.	G	.	.	LowGQX	END=204951079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204951080	.	T	C	3.07	LowGQX;LowQD;SB	BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.02;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.11:30,0,39:60:3:0.333
chr1	204951081	.	C	.	.	LowGQX	END=204951150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	204953153	.	A	.	.	LowGQX	END=204953243	GT	./.
chr1	204953244	.	G	.	.	LowGQX	END=204953272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204955036	.	A	.	.	LowGQX	END=204955244	GT	./.
chr1	204956544	.	A	.	.	LowGQX	END=204956670	GT	./.
chr1	204957759	.	A	.	.	LowGQX	END=204957765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204957766	.	G	.	.	LowGQX	.	GT	./.
chr1	204957767	.	G	.	.	LowGQX	END=204957772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204957773	.	A	.	.	LowGQX	.	GT	./.
chr1	204957774	.	A	.	.	LowGQX	END=204957789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204957790	.	G	.	.	LowGQX	.	GT	./.
chr1	204957791	.	T	.	.	LowGQX	END=204957796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204957797	.	A	.	.	LowGQX	.	GT	./.
chr1	204957798	.	C	.	.	LowGQX	END=204957833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204957834	.	A	.	.	LowGQX	.	GT	./.
chr1	204957835	.	A	.	.	LowGQX	END=204957862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204957863	.	C	.	.	LowGQX	.	GT	./.
chr1	204957864	.	C	.	.	LowGQX	END=204957949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204957950	.	C	.	.	LowGQX	END=204957978	GT	./.
chr1	204960377	.	C	.	.	LowGQX	END=204960476	GT	./.
chr1	204962844	.	C	.	.	LowGQX	END=204962943	GT	./.
chr1	204966297	.	G	.	.	LowGQX	END=204966518	GT	./.
chr1	204966519	.	A	.	.	LowGQX	END=204966582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204966583	.	A	.	.	LowGQX	.	GT	./.
chr1	204966584	.	G	.	.	LowGQX	END=204966689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204966690	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	204966691	.	G	.	.	LowGQX	END=204966707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204970246	.	T	.	.	LowGQX	END=204970372	GT	./.
chr1	204970373	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204970374	.	T	.	.	LowGQX	.	GT	./.
chr1	204970375	.	T	.	.	LowGQX	END=204970394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204970395	.	T	.	.	LowGQX	.	GT	./.
chr1	204970396	.	G	.	.	LowGQX	END=204970397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204970398	.	G	.	.	LowGQX	.	GT	./.
chr1	204970399	.	G	.	.	LowGQX	END=204970414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204971723	.	G	.	.	LowGQX	END=204971846	GT	./.
chr1	204971847	.	G	.	.	LowGQX	END=204971864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204971865	.	T	.	.	LowGQX	.	GT	./.
chr1	204971866	.	G	.	.	LowGQX	END=204971876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204978479	.	C	.	.	LowGQX	END=204978532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204978533	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	204978534	.	G	.	.	LowGQX	END=204978578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204978683	.	A	.	.	LowGQX	END=204978767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	204978768	.	C	.	.	LowGQX	END=204978818	GT	./.
chr1	204981877	.	A	.	.	LowGQX	END=204981956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204981957	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	204981958	.	A	.	.	LowGQX	END=204981992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	204981993	.	A	.	.	LowGQX	END=204981996	GT	./.
chr1	204985434	.	A	.	.	LowGQX	END=204985815	GT	./.
chr1	205022299	.	G	.	.	LowGQX	END=205022398	GT	./.
chr1	205027047	.	A	.	.	LowGQX	END=205027195	GT	./.
chr1	205027287	.	C	.	.	LowGQX	END=205027486	GT	./.
chr1	205027632	.	A	.	.	LowGQX	END=205027748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205027749	.	T	.	.	LowGQX	.	GT	./.
chr1	205027750	.	G	.	.	LowGQX	END=205027793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205028210	.	A	.	.	LowGQX	END=205028415	GT	./.
chr1	205028416	.	C	.	.	LowGQX	END=205028423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205028709	.	A	.	.	LowGQX	END=205028730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205028731	.	A	.	.	LowGQX	.	GT	./.
chr1	205028732	.	G	.	.	LowGQX	END=205028743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205028744	.	G	.	.	LowGQX	.	GT	./.
chr1	205028745	.	G	.	.	LowGQX	END=205028747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205028748	.	C	.	.	LowGQX	END=205028793	GT	./.
chr1	205028794	.	T	.	.	LowGQX	END=205028796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205028797	.	T	.	.	LowGQX	END=205028798	GT	./.
chr1	205028799	.	C	.	.	LowGQX	END=205028812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205030371	.	A	.	.	LowGQX	END=205030550	GT	./.
chr1	205030991	.	A	.	.	LowGQX	END=205031237	GT	./.
chr1	205031566	.	A	.	.	LowGQX	END=205031699	GT	./.
chr1	205033448	.	A	.	.	LowGQX	END=205033500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205033501	.	C	.	.	LowGQX	END=205033602	GT	./.
chr1	205033749	.	A	.	.	LowGQX	END=205033755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205033756	.	C	.	.	LowGQX	END=205033757	GT	./.
chr1	205033758	.	G	.	.	LowGQX	END=205033760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205033761	.	A	.	.	LowGQX	.	GT	./.
chr1	205033762	.	C	.	.	LowGQX	END=205033769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205033770	.	G	.	.	LowGQX	.	GT	./.
chr1	205033771	.	G	.	.	LowGQX	END=205033772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205033773	.	A	.	.	LowGQX	END=205033774	GT	./.
chr1	205033775	.	C	.	.	LowGQX	END=205033777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205033778	.	G	.	.	LowGQX	.	GT	./.
chr1	205033779	.	A	.	.	LowGQX	END=205033780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205033781	.	C	.	.	LowGQX	END=205033782	GT	./.
chr1	205033783	.	T	.	.	LowGQX	END=205033794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205033795	.	G	.	.	LowGQX	.	GT	./.
chr1	205033796	.	C	.	.	LowGQX	END=205033799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205033800	.	T	.	.	LowGQX	END=205033801	GT	./.
chr1	205033802	.	A	.	.	LowGQX	END=205033808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205033809	.	G	.	.	LowGQX	END=205033811	GT	./.
chr1	205033812	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205033813	.	A	.	.	LowGQX	END=205033814	GT	./.
chr1	205033815	.	T	.	.	LowGQX	END=205033817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205033818	.	A	.	.	LowGQX	.	GT	./.
chr1	205033819	.	C	.	.	LowGQX	END=205033824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205033825	.	T	.	.	LowGQX	.	GT	./.
chr1	205033826	.	T	.	.	LowGQX	END=205033839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205033840	.	T	.	.	LowGQX	.	GT	./.
chr1	205033841	.	G	.	.	LowGQX	END=205033845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205033846	.	A	.	.	LowGQX	.	GT	./.
chr1	205033847	.	A	.	.	LowGQX	END=205033857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205033858	.	C	.	.	LowGQX	END=205033859	GT	./.
chr1	205033860	.	G	.	.	LowGQX	END=205033863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205033864	.	T	.	.	LowGQX	.	GT	./.
chr1	205033865	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205033866	.	C	.	.	LowGQX	.	GT	./.
chr1	205033867	.	T	.	.	LowGQX	END=205033868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205033869	.	T	.	.	LowGQX	.	GT	./.
chr1	205033870	.	C	.	.	LowGQX	END=205033872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205033873	.	T	.	.	LowGQX	.	GT	./.
chr1	205033874	.	G	.	.	LowGQX	END=205033879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205033880	.	T	.	.	LowGQX	.	GT	./.
chr1	205034213	.	A	.	.	LowGQX	END=205034298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205034299	.	A	.	.	LowGQX	END=205034392	GT	./.
chr1	205034874	.	G	.	.	LowGQX	END=205035039	GT	./.
chr1	205035567	.	A	.	.	LowGQX	END=205035639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205035640	.	C	.	.	LowGQX	END=205035729	GT	./.
chr1	205036227	.	A	.	.	LowGQX	END=205036243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205036244	.	A	.	.	LowGQX	.	GT	./.
chr1	205036245	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205036246	.	G	.	.	LowGQX	.	GT	./.
chr1	205036247	.	G	.	.	LowGQX	END=205036251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205036252	.	G	.	.	LowGQX	.	GT	./.
chr1	205036253	.	C	.	.	LowGQX	END=205036284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205036285	.	T	.	.	LowGQX	.	GT	./.
chr1	205036286	.	G	.	.	LowGQX	END=205036380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205038605	.	T	.	.	LowGQX	END=205038704	GT	./.
chr1	205038953	.	A	.	.	LowGQX	END=205039191	GT	./.
chr1	205039552	.	A	.	.	LowGQX	END=205039557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205039558	.	C	.	.	LowGQX	.	GT	./.
chr1	205039559	.	A	.	.	LowGQX	END=205039561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205039562	.	G	.	.	LowGQX	.	GT	./.
chr1	205039563	.	T	.	.	LowGQX	END=205039573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205039574	.	A	.	.	LowGQX	END=205039668	GT	./.
chr1	205041073	.	A	.	.	LowGQX	END=205041074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041075	.	A	.	.	LowGQX	END=205041076	GT	./.
chr1	205041077	.	C	.	.	LowGQX	END=205041079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041080	.	C	.	.	LowGQX	.	GT	./.
chr1	205041081	.	T	.	.	LowGQX	END=205041114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041115	.	A	.	.	LowGQX	.	GT	./.
chr1	205041116	.	C	.	.	LowGQX	END=205041125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041126	.	A	.	.	LowGQX	.	GT	./.
chr1	205041127	.	C	.	.	LowGQX	END=205041134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041135	.	C	.	.	LowGQX	.	GT	./.
chr1	205041136	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041137	.	G	.	.	LowGQX	.	GT	./.
chr1	205041138	.	G	.	.	LowGQX	END=205041140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041141	.	A	.	.	LowGQX	.	GT	./.
chr1	205041142	.	C	.	.	LowGQX	END=205041154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041155	.	C	.	.	LowGQX	.	GT	./.
chr1	205041156	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041157	.	G	.	.	LowGQX	.	GT	./.
chr1	205041158	.	C	.	.	LowGQX	END=205041165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041166	.	A	.	.	LowGQX	.	GT	./.
chr1	205041167	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041168	.	C	.	.	LowGQX	.	GT	./.
chr1	205041169	.	C	.	.	LowGQX	END=205041171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041172	.	A	.	.	LowGQX	.	GT	./.
chr1	205041173	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041174	.	A	.	.	LowGQX	.	GT	./.
chr1	205041175	.	C	.	.	LowGQX	END=205041178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041179	.	G	.	.	LowGQX	.	GT	./.
chr1	205041180	.	T	.	.	LowGQX	END=205041181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041182	.	C	.	.	LowGQX	.	GT	./.
chr1	205041183	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041184	.	A	.	.	LowGQX	.	GT	./.
chr1	205041185	.	T	.	.	LowGQX	END=205041240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041241	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	205041242	.	C	.	.	LowGQX	END=205041262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	205041263	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	205041609	.	A	.	.	LowGQX	END=205041668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041669	.	T	.	.	LowGQX	.	GT	./.
chr1	205041670	.	A	.	.	LowGQX	END=205041672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041673	.	T	.	.	LowGQX	.	GT	./.
chr1	205041674	.	G	.	.	LowGQX	END=205041680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041681	.	T	.	.	LowGQX	.	GT	./.
chr1	205041682	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041683	.	T	.	.	LowGQX	END=205041684	GT	./.
chr1	205041685	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041686	.	T	.	.	LowGQX	.	GT	./.
chr1	205041687	.	C	.	.	LowGQX	END=205041697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041698	.	A	.	.	LowGQX	END=205041699	GT	./.
chr1	205041700	.	G	.	.	LowGQX	END=205041702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041703	.	T	.	.	LowGQX	.	GT	./.
chr1	205041704	.	C	.	.	LowGQX	END=205041709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041710	.	T	.	.	LowGQX	.	GT	./.
chr1	205041711	.	C	.	.	LowGQX	END=205041724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041725	.	T	.	.	LowGQX	.	GT	./.
chr1	205041726	.	G	.	.	LowGQX	END=205041730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041731	.	A	.	.	LowGQX	END=205041752	GT	./.
chr1	205041753	.	G	.	.	LowGQX	END=205041766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205041767	.	C	.	.	LowGQX	.	GT	./.
chr1	205041768	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205042194	.	A	.	.	LowGQX	END=205042366	GT	./.
chr1	205042782	.	A	.	.	LowGQX	END=205042895	GT	./.
chr1	205047680	.	A	.	.	LowGQX	END=205047839	GT	./.
chr1	205052679	.	T	.	.	LowGQX	END=205052717	GT	./.
chr1	205052718	.	A	.	.	LowGQX	END=205052789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205052790	.	C	.	.	LowGQX	.	GT	./.
chr1	205052791	.	A	.	.	LowGQX	END=205053067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205053068	.	G	.	.	LowGQX	END=205053299	GT	./.
chr1	205053300	.	G	.	.	LowGQX	END=205053450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205057820	.	T	.	.	LowGQX	END=205057979	GT	./.
chr1	205063999	.	A	.	.	LowGQX	END=205064030	GT	./.
chr1	205064031	.	C	.	.	LowGQX	END=205064191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205064192	.	T	.	.	LowGQX	END=205064194	GT	./.
chr1	205065808	.	A	.	.	LowGQX	END=205066041	GT	./.
chr1	205066439	.	T	.	.	LowGQX	END=205066485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205066486	.	G	.	.	LowGQX	.	GT	./.
chr1	205066487	.	G	.	.	LowGQX	END=205066523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205066524	.	C	.	.	LowGQX	END=205066538	GT	./.
chr1	205068115	.	A	.	.	LowGQX	END=205068128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205068129	.	G	.	.	LowGQX	.	GT	./.
chr1	205068130	.	C	.	.	LowGQX	END=205068136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205068137	.	T	.	.	LowGQX	.	GT	./.
chr1	205068138	.	T	.	.	LowGQX	END=205068176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205068177	.	C	.	.	LowGQX	.	GT	./.
chr1	205068178	.	G	.	.	LowGQX	END=205068209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205068210	.	C	.	.	LowGQX	.	GT	./.
chr1	205068211	.	T	.	.	LowGQX	END=205068215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205068216	.	C	.	.	LowGQX	.	GT	./.
chr1	205068217	.	A	.	.	LowGQX	END=205068223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205068224	.	C	.	.	LowGQX	.	GT	./.
chr1	205068225	.	T	.	.	LowGQX	END=205068235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205068236	.	T	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	205068855	.	A	.	.	LowGQX	END=205068954	GT	./.
chr1	205069037	.	A	.	.	LowGQX	END=205069194	GT	./.
chr1	205069278	.	A	.	.	LowGQX	END=205069401	GT	./.
chr1	205070726	.	A	.	.	LowGQX	END=205070839	GT	./.
chr1	205072983	.	A	.	.	LowGQX	END=205073008	GT	./.
chr1	205073009	.	A	.	.	LowGQX	END=205073014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205073015	.	T	.	.	LowGQX	.	GT	./.
chr1	205073016	.	T	.	.	LowGQX	END=205073018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205073019	.	C	.	.	LowGQX	.	GT	./.
chr1	205073020	.	C	.	.	LowGQX	END=205073037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205073038	.	C	.	.	LowGQX	.	GT	./.
chr1	205073039	.	C	.	.	LowGQX	END=205073041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205073042	.	A	.	.	LowGQX	.	GT	./.
chr1	205073043	.	A	.	.	LowGQX	END=205073045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205073046	.	T	.	.	LowGQX	.	GT	./.
chr1	205073047	.	T	.	.	LowGQX	END=205073052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205073053	.	C	.	.	LowGQX	.	GT	./.
chr1	205073054	.	G	.	.	LowGQX	END=205073057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205073058	.	T	.	.	LowGQX	.	GT	./.
chr1	205073059	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205073060	.	A	.	.	LowGQX	.	GT	./.
chr1	205073061	.	T	.	.	LowGQX	END=205073062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205073063	.	G	.	.	LowGQX	.	GT	./.
chr1	205073064	.	T	.	.	LowGQX	END=205073066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205073067	.	A	.	.	LowGQX	.	GT	./.
chr1	205073068	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205073069	.	C	.	.	LowGQX	.	GT	./.
chr1	205073070	.	G	.	.	LowGQX	END=205073080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205073081	.	A	.	.	LowGQX	.	GT	./.
chr1	205073082	.	T	.	.	LowGQX	END=205073083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205073084	.	T	.	.	LowGQX	.	GT	./.
chr1	205073085	.	T	.	.	LowGQX	END=205073098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205073099	.	G	.	.	LowGQX	.	GT	./.
chr1	205073100	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205073101	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	205073102	.	C	.	.	LowGQX	END=205073115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205073116	.	C	.	.	LowGQX	.	GT	./.
chr1	205073117	.	A	.	.	LowGQX	END=205073149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205074154	.	A	.	.	LowGQX	END=205074298	GT	./.
chr1	205083915	.	A	.	.	LowGQX	END=205084114	GT	./.
chr1	205084984	.	A	.	.	LowGQX	END=205085003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205085004	.	A	.	.	LowGQX	END=205085135	GT	./.
chr1	205085349	.	C	.	.	LowGQX	END=205085508	GT	./.
chr1	205090943	.	A	.	.	LowGQX	END=205091042	GT	./.
chr1	205116684	.	T	.	.	LowGQX	END=205116875	GT	./.
chr1	205117331	.	A	.	.	LowGQX	END=205117469	GT	./.
chr1	205119806	.	A	.	.	LowGQX	END=205119975	GT	./.
chr1	205126399	.	A	.	.	LowGQX	END=205126516	GT	./.
chr1	205128673	.	A	.	.	LowGQX	END=205128809	GT	./.
chr1	205129190	.	C	.	.	LowGQX	END=205129369	GT	./.
chr1	205129370	.	G	.	.	LowGQX	END=205129400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205130384	.	A	.	.	LowGQX	END=205130453	GT	./.
chr1	205130454	.	T	.	.	LowGQX	END=205130458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205130459	.	A	.	.	LowGQX	.	GT	./.
chr1	205130460	.	A	.	.	LowGQX	END=205130517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205131162	.	A	.	.	LowGQX	END=205131281	GT	./.
chr1	205131282	.	T	.	.	LowGQX	END=205131312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205131313	.	G	.	.	LowGQX	.	GT	./.
chr1	205131314	.	G	.	.	LowGQX	END=205131317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205131318	.	A	.	.	LowGQX	.	GT	./.
chr1	205131319	.	C	.	.	LowGQX	END=205131342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205132043	.	A	.	.	LowGQX	END=205132142	GT	./.
chr1	205132849	.	A	.	.	LowGQX	END=205133085	GT	./.
chr1	205138289	.	A	.	.	LowGQX	END=205138962	GT	./.
chr1	205156544	.	A	.	.	LowGQX	END=205156936	GT	./.
chr1	205180397	.	A	.	.	LowGQX	END=205180665	GT	./.
chr1	205197691	.	C	.	.	LowGQX	END=205197901	GT	./.
chr1	205210631	.	A	.	.	LowGQX	END=205210920	GT	./.
chr1	205210921	.	A	.	.	LowGQX	END=205210978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205210979	.	G	.	.	LowGQX	.	GT	./.
chr1	205210980	.	T	.	.	LowGQX	END=205211046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205211047	.	G	T	14.90	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.45;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	205211048	.	C	.	.	LowGQX	END=205211082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205211083	.	T	.	.	LowGQX	.	GT	./.
chr1	205211084	.	C	.	.	LowGQX	END=205211091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205211092	.	A	.	.	LowGQX	.	GT	./.
chr1	205211093	.	C	.	.	LowGQX	END=205211097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205211098	.	G	.	.	LowGQX	.	GT	./.
chr1	205211099	.	A	.	.	LowGQX	END=205211140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205211141	.	T	.	.	LowGQX	END=205211174	GT	./.
chr1	205215734	.	A	.	.	LowGQX	END=205215750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205215751	.	A	.	.	LowGQX	.	GT	./.
chr1	205215752	.	A	.	.	LowGQX	END=205215756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205215757	.	G	.	.	LowGQX	.	GT	./.
chr1	205215758	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205215759	.	T	.	.	LowGQX	.	GT	./.
chr1	205215760	.	G	.	.	LowGQX	END=205215768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205215769	.	T	.	.	LowGQX	.	GT	./.
chr1	205215770	.	T	.	.	LowGQX	END=205215794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205215795	.	A	.	.	LowGQX	.	GT	./.
chr1	205215796	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205215797	.	G	.	.	LowGQX	.	GT	./.
chr1	205215798	.	C	.	.	LowGQX	END=205215810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205215811	.	C	.	.	LowGQX	END=205215813	GT	./.
chr1	205215814	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205215815	.	C	.	.	LowGQX	.	GT	./.
chr1	205215816	.	A	.	.	LowGQX	END=205215817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205215818	.	G	.	.	LowGQX	.	GT	./.
chr1	205215819	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205215820	.	G	.	.	LowGQX	.	GT	./.
chr1	205215821	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205215822	.	G	.	.	LowGQX	.	GT	./.
chr1	205215823	.	A	.	.	LowGQX	END=205215833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205225452	.	C	.	.	LowGQX	END=205225551	GT	./.
chr1	205238030	.	A	.	.	LowGQX	END=205239014	GT	./.
chr1	205240246	.	A	.	.	LowGQX	END=205240267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205240268	.	A	.	.	LowGQX	.	GT	./.
chr1	205240269	.	G	.	.	LowGQX	END=205240319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205240320	.	G	.	.	LowGQX	END=205240473	GT	./.
chr1	205240939	.	A	.	.	LowGQX	END=205240947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205240948	.	T	.	.	LowGQX	.	GT	./.
chr1	205240949	.	G	.	.	LowGQX	END=205240952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205240953	.	T	.	.	LowGQX	.	GT	./.
chr1	205240954	.	C	.	.	LowGQX	END=205241006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205241007	.	G	.	.	LowGQX	.	GT	./.
chr1	205241008	.	T	.	.	LowGQX	END=205241020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205241021	.	C	.	.	LowGQX	END=205241084	GT	./.
chr1	205241085	.	G	.	.	LowGQX	END=205241108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205241109	.	A	.	.	LowGQX	.	GT	./.
chr1	205241110	.	C	.	.	LowGQX	END=205241127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205241128	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	205241129	.	G	.	.	LowGQX	END=205241165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205241166	.	A	.	.	LowGQX	.	GT	./.
chr1	205241167	.	C	.	.	LowGQX	END=205241216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205241217	.	A	.	.	LowGQX	.	GT	./.
chr1	205241218	.	C	.	.	LowGQX	END=205241232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205241233	.	A	.	.	LowGQX	END=205241254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	205272576	.	A	.	.	LowGQX	END=205273311	GT	./.
chr1	205273312	.	G	.	.	LowGQX	END=205273343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205273344	.	A	.	.	LowGQX	.	GT	./.
chr1	205273345	.	G	.	.	LowGQX	END=205273499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205273500	.	T	.	.	LowGQX	END=205273643	GT	./.
chr1	205274325	.	A	.	.	LowGQX	END=205274461	GT	./.
chr1	205275314	.	A	.	.	LowGQX	END=205275437	GT	./.
chr1	205277209	.	A	.	.	LowGQX	.	GT	./.
chr1	205277210	.	G	.	.	LowGQX	END=205277214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205277215	.	T	.	.	LowGQX	.	GT	./.
chr1	205277216	.	A	.	.	LowGQX	END=205277217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205277218	.	A	.	.	LowGQX	END=205277219	GT	./.
chr1	205277220	.	C	.	.	LowGQX	END=205277221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205277222	.	A	.	.	LowGQX	.	GT	./.
chr1	205277223	.	C	.	.	LowGQX	END=205277245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205277246	.	A	.	.	LowGQX	END=205277247	GT	./.
chr1	205277248	.	C	.	.	LowGQX	END=205277253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205277254	.	T	.	.	LowGQX	.	GT	./.
chr1	205277255	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205277256	.	G	.	.	LowGQX	.	GT	./.
chr1	205277257	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205277258	.	C	.	.	LowGQX	.	GT	./.
chr1	205277259	.	A	.	.	LowGQX	END=205277267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205277268	.	T	.	.	LowGQX	.	GT	./.
chr1	205277269	.	C	.	.	LowGQX	END=205277277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205277278	.	A	.	.	LowGQX	.	GT	./.
chr1	205277279	.	G	.	.	LowGQX	END=205277282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205277283	.	T	.	.	LowGQX	.	GT	./.
chr1	205277284	.	G	.	.	LowGQX	END=205277286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205277287	.	A	.	.	LowGQX	.	GT	./.
chr1	205277288	.	C	.	.	LowGQX	END=205277332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205277333	.	T	.	.	LowGQX	.	GT	./.
chr1	205277334	.	T	.	.	LowGQX	END=205277335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205277336	.	A	.	.	LowGQX	.	GT	./.
chr1	205277337	.	G	.	.	LowGQX	END=205277338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205277339	.	T	.	.	LowGQX	.	GT	./.
chr1	205277340	.	C	.	.	LowGQX	END=205277344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205277345	.	T	.	.	LowGQX	.	GT	./.
chr1	205277346	.	G	.	.	LowGQX	END=205277354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205277355	.	T	.	.	LowGQX	.	GT	./.
chr1	205277356	.	G	.	.	LowGQX	END=205277364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205277707	.	A	.	.	LowGQX	END=205277714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205277715	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	205277716	.	C	.	.	LowGQX	END=205277830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205277831	.	C	.	.	LowGQX	END=205277862	GT	./.
chr1	205280831	.	A	.	.	LowGQX	END=205280835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205280836	.	C	.	.	LowGQX	END=205280955	GT	./.
chr1	205290524	.	A	.	.	LowGQX	END=205290723	GT	./.
chr1	205290724	.	G	.	.	LowGQX	END=205290728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205290729	.	A	.	.	LowGQX	.	GT	./.
chr1	205290730	.	G	.	.	LowGQX	END=205290758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205306515	.	G	.	.	LowGQX	END=205306722	GT	./.
chr1	205307621	.	A	.	.	LowGQX	END=205307726	GT	./.
chr1	205308320	.	A	.	.	LowGQX	END=205308539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205308770	.	A	.	.	LowGQX	END=205308938	GT	./.
chr1	205312355	.	G	.	.	LowGQX	END=205312434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205312435	.	A	.	.	LowGQX	.	GT	./.
chr1	205312436	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205312437	.	A	.	.	LowGQX	.	GT	./.
chr1	205312438	.	T	.	.	LowGQX	END=205312472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205312473	.	A	.	.	LowGQX	.	GT	./.
chr1	205312474	.	C	.	.	LowGQX	END=205312482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205312483	.	T	.	.	LowGQX	.	GT	./.
chr1	205312484	.	C	.	.	LowGQX	END=205312490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205312491	.	A	.	.	LowGQX	END=205312734	GT	./.
chr1	205325629	.	A	.	.	LowGQX	END=205325728	GT	./.
chr1	205350785	.	C	.	.	LowGQX	END=205350986	GT	./.
chr1	205353404	.	A	.	.	LowGQX	END=205353503	GT	./.
chr1	205385342	.	C	.	.	LowGQX	END=205385441	GT	./.
chr1	205388356	.	A	.	.	LowGQX	END=205388482	GT	./.
chr1	205389574	.	T	.	.	LowGQX	END=205389602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205389603	.	A	.	.	LowGQX	.	GT	./.
chr1	205389604	.	A	.	.	LowGQX	END=205389673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417429	.	A	.	.	LowGQX	END=205417432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417433	.	G	.	.	LowGQX	.	GT	./.
chr1	205417434	.	C	.	.	LowGQX	END=205417435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417436	.	C	.	.	LowGQX	.	GT	./.
chr1	205417437	.	G	.	.	LowGQX	END=205417454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417455	.	T	.	.	LowGQX	.	GT	./.
chr1	205417456	.	G	.	.	LowGQX	END=205417459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417460	.	T	.	.	LowGQX	.	GT	./.
chr1	205417461	.	T	.	.	LowGQX	END=205417463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417464	.	G	.	.	LowGQX	.	GT	./.
chr1	205417465	.	C	.	.	LowGQX	END=205417471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417472	.	T	.	.	LowGQX	.	GT	./.
chr1	205417473	.	G	.	.	LowGQX	END=205417475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417476	.	T	.	.	LowGQX	.	GT	./.
chr1	205417477	.	T	.	.	LowGQX	END=205417478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417479	.	G	.	.	LowGQX	.	GT	./.
chr1	205417480	.	G	.	.	LowGQX	END=205417482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417483	.	C	.	.	LowGQX	.	GT	./.
chr1	205417484	.	A	.	.	LowGQX	END=205417489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417490	.	C	.	.	LowGQX	.	GT	./.
chr1	205417491	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417492	.	C	.	.	LowGQX	.	GT	./.
chr1	205417493	.	A	.	.	LowGQX	END=205417495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417496	.	G	.	.	LowGQX	.	GT	./.
chr1	205417497	.	G	.	.	LowGQX	END=205417498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417499	.	A	.	.	LowGQX	.	GT	./.
chr1	205417500	.	T	.	.	LowGQX	END=205417507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417508	.	C	.	.	LowGQX	.	GT	./.
chr1	205417509	.	A	.	.	LowGQX	END=205417515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417516	.	A	.	.	LowGQX	.	GT	./.
chr1	205417517	.	C	.	.	LowGQX	END=205417518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417519	.	G	.	.	LowGQX	.	GT	./.
chr1	205417520	.	C	.	.	LowGQX	END=205417525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417526	.	G	.	.	LowGQX	.	GT	./.
chr1	205417527	.	G	.	.	LowGQX	END=205417528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417529	.	G	.	.	LowGQX	END=205417530	GT	./.
chr1	205417531	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417532	.	G	.	.	LowGQX	.	GT	./.
chr1	205417533	.	T	.	.	LowGQX	END=205417541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417542	.	A	.	.	LowGQX	.	GT	./.
chr1	205417543	.	G	.	.	LowGQX	END=205417555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417556	.	G	.	.	LowGQX	.	GT	./.
chr1	205417557	.	A	.	.	LowGQX	END=205417558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417559	.	G	.	.	LowGQX	.	GT	./.
chr1	205417560	.	C	.	.	LowGQX	END=205417561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417562	.	A	.	.	LowGQX	END=205417564	GT	./.
chr1	205417565	.	A	.	.	LowGQX	END=205417566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205417567	.	C	.	.	LowGQX	END=205417579	GT	./.
chr1	205492294	.	T	.	.	LowGQX	END=205492413	GT	./.
chr1	205492414	.	G	.	.	LowGQX	END=205492428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205492429	.	A	.	.	LowGQX	.	GT	./.
chr1	205492430	.	G	.	.	LowGQX	END=205492541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205492542	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	205492543	.	A	.	.	LowGQX	END=205492845	GT	./.
chr1	205493358	.	A	.	.	LowGQX	END=205493487	GT	./.
chr1	205494246	.	T	.	.	LowGQX	END=205494345	GT	./.
chr1	205495191	.	A	.	.	LowGQX	.	GT	./.
chr1	205495192	.	G	.	.	LowGQX	END=205495196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495197	.	C	.	.	LowGQX	END=205495198	GT	./.
chr1	205495199	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495200	.	A	.	.	LowGQX	.	GT	./.
chr1	205495201	.	T	.	.	LowGQX	END=205495202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495203	.	C	.	.	LowGQX	.	GT	./.
chr1	205495204	.	C	.	.	LowGQX	END=205495213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495214	.	A	.	.	LowGQX	.	GT	./.
chr1	205495215	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495216	.	A	.	.	LowGQX	.	GT	./.
chr1	205495217	.	G	.	.	LowGQX	END=205495219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495220	.	C	.	.	LowGQX	.	GT	./.
chr1	205495221	.	G	.	.	LowGQX	END=205495222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495223	.	A	.	.	LowGQX	END=205495224	GT	./.
chr1	205495225	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495226	.	A	.	.	LowGQX	.	GT	./.
chr1	205495227	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495228	.	A	.	.	LowGQX	.	GT	./.
chr1	205495229	.	C	.	.	LowGQX	END=205495233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495234	.	G	.	.	LowGQX	END=205495239	GT	./.
chr1	205495240	.	C	.	.	LowGQX	END=205495241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495242	.	T	.	.	LowGQX	.	GT	./.
chr1	205495243	.	T	.	.	LowGQX	END=205495244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495245	.	T	.	.	LowGQX	.	GT	./.
chr1	205495246	.	G	.	.	LowGQX	END=205495247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495248	.	C	.	.	LowGQX	.	GT	./.
chr1	205495249	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495250	.	C	.	.	LowGQX	END=205495251	GT	./.
chr1	205495252	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495253	.	A	.	.	LowGQX	.	GT	./.
chr1	205495254	.	A	.	.	LowGQX	END=205495256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495257	.	A	.	.	LowGQX	.	GT	./.
chr1	205495258	.	G	.	.	LowGQX	END=205495260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495261	.	C	.	.	LowGQX	END=205495263	GT	./.
chr1	205495264	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495265	.	C	.	.	LowGQX	END=205495266	GT	./.
chr1	205495267	.	G	.	.	LowGQX	END=205495270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495271	.	C	.	.	LowGQX	.	GT	./.
chr1	205495272	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495273	.	C	.	.	LowGQX	END=205495278	GT	./.
chr1	205495279	.	G	.	.	LowGQX	END=205495281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495282	.	A	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	205495283	.	G	.	.	LowGQX	END=205495284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495285	.	G	.	.	LowGQX	.	GT	./.
chr1	205495286	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495287	.	C	.	.	LowGQX	.	GT	./.
chr1	205495288	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495289	.	T	.	.	LowGQX	.	GT	./.
chr1	205495290	.	G	.	.	LowGQX	END=205495291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495292	.	A	.	.	LowGQX	END=205495293	GT	./.
chr1	205495294	.	T	.	.	LowGQX	END=205495295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495296	.	C	.	.	LowGQX	END=205495298	GT	./.
chr1	205495299	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495300	.	C	.	.	LowGQX	.	GT	./.
chr1	205495301	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495302	.	G	.	.	LowGQX	.	GT	./.
chr1	205495303	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495304	.	G	.	.	LowGQX	.	GT	./.
chr1	205495305	.	A	.	.	LowGQX	END=205495308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205495309	.	T	.	.	LowGQX	.	GT	./.
chr1	205495493	.	A	.	.	LowGQX	END=205495558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205495559	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	205495560	.	C	.	.	LowGQX	END=205495562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	205495563	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	205495564	.	C	.	.	LowGQX	END=205495575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	205495576	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	205495577	.	G	.	.	LowGQX	END=205495584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	205495585	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	205495586	.	C	.	.	LowGQX	END=205495592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	205495861	.	G	.	.	LowGQX	END=205495967	GT	./.
chr1	205496920	.	A	.	.	LowGQX	END=205496955	GT	./.
chr1	205496956	.	A	.	.	LowGQX	END=205496957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205496958	.	T	.	.	LowGQX	.	GT	./.
chr1	205496959	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205496960	.	T	.	.	LowGQX	.	GT	./.
chr1	205496961	.	C	.	.	LowGQX	END=205496964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205496965	.	A	.	.	LowGQX	.	GT	./.
chr1	205496966	.	C	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	205496967	.	C	.	.	LowGQX	END=205496970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205496971	.	A	.	.	LowGQX	END=205496974	GT	./.
chr1	205496975	.	C	.	.	LowGQX	END=205496976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205496977	.	T	.	.	LowGQX	END=205496978	GT	./.
chr1	205496979	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205496980	.	A	.	.	LowGQX	.	GT	./.
chr1	205496981	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205496982	.	C	.	.	LowGQX	.	GT	./.
chr1	205496983	.	G	.	.	LowGQX	END=205496984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205496985	.	G	.	.	LowGQX	END=205496986	GT	./.
chr1	205496987	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205496988	.	C	.	.	LowGQX	END=205496992	GT	./.
chr1	205496993	.	G	.	.	LowGQX	END=205496998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205496999	.	G	.	.	LowGQX	.	GT	./.
chr1	205497000	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205497001	.	A	.	.	LowGQX	.	GT	./.
chr1	205497002	.	C	.	.	LowGQX	END=205497004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205497005	.	G	.	.	LowGQX	.	GT	./.
chr1	205497006	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205497007	.	T	.	.	LowGQX	.	GT	./.
chr1	205497008	.	C	.	.	LowGQX	END=205497009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205497010	.	T	.	.	LowGQX	.	GT	./.
chr1	205497011	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205497012	.	A	.	.	LowGQX	.	GT	./.
chr1	205497013	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205497014	.	C	.	.	LowGQX	END=205497015	GT	./.
chr1	205497016	.	A	.	.	LowGQX	END=205497023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205497024	.	G	.	.	LowGQX	.	GT	./.
chr1	205497025	.	A	.	.	LowGQX	END=205497027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205497028	.	T	.	.	LowGQX	.	GT	./.
chr1	205497029	.	G	.	.	LowGQX	END=205497030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205497031	.	A	.	.	LowGQX	.	GT	./.
chr1	205497032	.	G	.	.	LowGQX	END=205497033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205497034	.	T	.	.	LowGQX	.	GT	./.
chr1	205497035	.	G	.	.	LowGQX	END=205497046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205497047	.	T	.	.	LowGQX	.	GT	./.
chr1	205497174	.	A	.	.	LowGQX	END=205497298	GT	./.
chr1	205498125	.	A	.	.	LowGQX	END=205498226	GT	./.
chr1	205498450	.	A	.	.	LowGQX	END=205498468	GT	./.
chr1	205498469	.	A	.	.	LowGQX	END=205498537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205498538	.	C	.	.	LowGQX	END=205498561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	205498647	.	A	.	.	LowGQX	END=205498660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	205498661	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	205498662	.	G	.	.	LowGQX	END=205498692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	205498693	.	T	.	.	LowGQX	END=205498696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205498697	.	T	.	.	LowGQX	.	GT	./.
chr1	205498698	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	205498699	.	T	.	.	LowGQX	.	GT	./.
chr1	205498700	.	C	.	.	LowGQX	END=205498701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	205498702	.	T	.	.	LowGQX	.	GT	./.
chr1	205498703	.	C	.	.	LowGQX	END=205498705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205498706	.	G	.	.	LowGQX	END=205498792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	205498793	.	A	.	.	LowGQX	END=205498855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205498856	.	A	.	.	LowGQX	END=205498901	GT	./.
chr1	205499383	.	T	.	.	LowGQX	END=205499482	GT	./.
chr1	205499745	.	C	.	.	LowGQX	END=205499844	GT	./.
chr1	205500440	.	C	.	.	LowGQX	END=205500539	GT	./.
chr1	205538126	.	C	.	.	LowGQX	END=205538495	GT	./.
chr1	205548814	.	A	.	.	LowGQX	END=205549079	GT	./.
chr1	205549787	.	A	.	.	LowGQX	END=205549869	GT	./.
chr1	205549870	.	C	.	.	LowGQX	END=205549872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549873	.	G	.	.	LowGQX	.	GT	./.
chr1	205549874	.	C	.	.	LowGQX	END=205549876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549877	.	A	.	.	LowGQX	END=205549880	GT	./.
chr1	205549881	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549882	.	A	.	.	LowGQX	END=205549885	GT	./.
chr1	205549886	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549887	.	C	.	.	LowGQX	.	GT	./.
chr1	205549888	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549889	.	A	.	.	LowGQX	.	GT	./.
chr1	205549890	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549891	.	A	.	.	LowGQX	.	GT	./.
chr1	205549892	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549893	.	C	.	.	LowGQX	END=205549894	GT	./.
chr1	205549895	.	C	.	.	LowGQX	END=205549896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549897	.	T	.	.	LowGQX	.	GT	./.
chr1	205549898	.	C	.	.	LowGQX	END=205549900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549901	.	G	.	.	LowGQX	END=205549902	GT	./.
chr1	205549903	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549904	.	G	.	.	LowGQX	END=205549910	GT	./.
chr1	205549911	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549912	.	T	.	.	LowGQX	END=205549913	GT	./.
chr1	205549914	.	C	.	.	LowGQX	END=205549915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549916	.	A	.	.	LowGQX	END=205549924	GT	./.
chr1	205549925	.	G	.	.	LowGQX	END=205549926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549927	.	G	.	.	LowGQX	END=205549929	GT	./.
chr1	205549930	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549931	.	T	.	.	LowGQX	END=205549933	GT	./.
chr1	205549934	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549935	.	C	.	.	LowGQX	.	GT	./.
chr1	205549936	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549937	.	A	.	.	LowGQX	END=205549938	GT	./.
chr1	205549939	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549940	.	A	.	.	LowGQX	.	GT	./.
chr1	205549941	.	C	.	.	LowGQX	END=205549946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549947	.	A	.	.	LowGQX	.	GT	./.
chr1	205549948	.	G	.	.	LowGQX	END=205549949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549950	.	T	.	.	LowGQX	.	GT	./.
chr1	205549951	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549952	.	C	.	.	LowGQX	.	GT	./.
chr1	205549953	.	C	.	.	LowGQX	END=205549954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549955	.	A	.	.	LowGQX	END=205549956	GT	./.
chr1	205549957	.	C	.	.	LowGQX	END=205549961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549962	.	G	.	.	LowGQX	END=205549963	GT	./.
chr1	205549964	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549965	.	C	.	.	LowGQX	.	GT	./.
chr1	205549966	.	A	.	.	LowGQX	END=205549970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549971	.	G	.	.	LowGQX	.	GT	./.
chr1	205549972	.	A	.	.	LowGQX	END=205549974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549975	.	T	.	.	LowGQX	.	GT	./.
chr1	205549976	.	T	.	.	LowGQX	END=205549997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205549998	.	C	.	.	LowGQX	.	GT	./.
chr1	205549999	.	G	.	.	LowGQX	END=205550008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205550009	.	C	.	.	LowGQX	.	GT	./.
chr1	205550010	.	C	.	.	LowGQX	END=205550011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205550012	.	G	.	.	LowGQX	.	GT	./.
chr1	205550013	.	A	.	.	LowGQX	END=205550014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205550015	.	T	.	.	LowGQX	END=205550051	GT	./.
chr1	205553081	.	A	.	.	LowGQX	END=205553253	GT	./.
chr1	205554002	.	A	.	.	LowGQX	END=205554121	GT	./.
chr1	205555160	.	A	.	.	LowGQX	END=205555369	GT	./.
chr1	205561266	.	A	.	.	LowGQX	END=205561417	GT	./.
chr1	205566894	.	T	.	.	LowGQX	END=205566993	GT	./.
chr1	205568257	.	A	.	.	LowGQX	END=205568381	GT	./.
chr1	205569512	.	C	.	.	LowGQX	END=205569547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205569548	.	A	.	.	LowGQX	END=205569611	GT	./.
chr1	205585672	.	G	.	.	LowGQX	END=205585774	GT	./.
chr1	205588033	.	T	.	.	LowGQX	END=205588203	GT	./.
chr1	205588954	.	T	.	.	LowGQX	END=205589968	GT	./.
chr1	205592802	.	A	.	.	LowGQX	END=205593019	GT	./.
chr1	205600748	.	C	.	.	LowGQX	END=205601027	GT	./.
chr1	205615842	.	A	.	.	LowGQX	END=205615941	GT	./.
chr1	205628360	.	T	.	.	LowGQX	END=205628801	GT	./.
chr1	205630987	.	A	.	.	LowGQX	END=205631256	GT	./.
chr1	205631959	.	A	.	.	LowGQX	END=205631971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205631972	.	T	.	.	LowGQX	END=205632748	GT	./.
chr1	205633611	.	A	.	.	LowGQX	END=205633620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	205633621	.	A	.	.	LowGQX	END=205633631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205633632	.	C	.	.	LowGQX	END=205633676	GT	./.
chr1	205633677	.	G	.	.	LowGQX	END=205633711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205633712	.	T	.	.	LowGQX	.	GT	./.
chr1	205633713	.	T	.	.	LowGQX	END=205633719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205633720	.	T	.	.	LowGQX	.	GT	./.
chr1	205633721	.	T	.	.	LowGQX	END=205633786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205687406	.	T	.	.	LowGQX	END=205687500	GT	./.
chr1	205687501	.	T	.	.	LowGQX	END=205687549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205687550	.	G	.	.	LowGQX	.	GT	./.
chr1	205687551	.	C	.	.	LowGQX	END=205687567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205687568	.	C	.	.	LowGQX	.	GT	./.
chr1	205687569	.	G	.	.	LowGQX	END=205687581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205687582	.	T	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	205687583	.	T	.	.	LowGQX	END=205687588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205687589	.	T	.	.	LowGQX	.	GT	./.
chr1	205687590	.	T	.	.	LowGQX	END=205687591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205687592	.	A	.	.	LowGQX	.	GT	./.
chr1	205687593	.	C	.	.	LowGQX	END=205687596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205687597	.	A	.	.	LowGQX	END=205687598	GT	./.
chr1	205687599	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205687600	.	T	.	.	LowGQX	.	GT	./.
chr1	205687601	.	G	.	.	LowGQX	END=205687602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205687603	.	C	.	.	LowGQX	.	GT	./.
chr1	205687604	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205687605	.	T	.	.	LowGQX	END=205687606	GT	./.
chr1	205687607	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205687608	.	C	.	.	LowGQX	.	GT	./.
chr1	205687609	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205688653	.	A	.	.	LowGQX	END=205688806	GT	./.
chr1	205689627	.	A	.	.	LowGQX	END=205689783	GT	./.
chr1	205693032	.	T	.	.	LowGQX	END=205693204	GT	./.
chr1	205696771	.	G	.	.	LowGQX	END=205696935	GT	./.
chr1	205698618	.	C	.	.	LowGQX	END=205698653	GT	./.
chr1	205698654	.	C	.	.	LowGQX	END=205698692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205698693	.	A	.	.	LowGQX	.	GT	./.
chr1	205698694	.	A	.	.	LowGQX	END=205698726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205698727	.	A	.	.	LowGQX	.	GT	./.
chr1	205698728	.	G	.	.	LowGQX	END=205698733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205698734	.	A	.	.	LowGQX	.	GT	./.
chr1	205698735	.	A	.	.	LowGQX	END=205698736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205698737	.	A	.	.	LowGQX	.	GT	./.
chr1	205698738	.	A	.	.	LowGQX	END=205698774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205719001	.	A	.	.	LowGQX	END=205719160	GT	./.
chr1	205739419	.	A	.	.	PASS	END=205739463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	205739464	.	A	.	.	PASS	END=205739466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	205739467	.	C	.	.	PASS	END=205739496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	205739497	.	G	.	.	PASS	END=205739509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	205739510	.	A	.	.	PASS	END=205739523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	205739524	.	G	.	.	PASS	END=205739632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	205739810	.	C	.	.	PASS	END=205739823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	205739824	.	G	.	.	PASS	END=205739886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	205739887	.	C	.	.	PASS	END=205739938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	205739939	.	C	.	.	PASS	END=205739960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	205739961	.	C	.	.	PASS	END=205739973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	205739974	.	C	.	.	PASS	END=205739984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr1	205739985	.	A	.	.	PASS	END=205739992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	205739993	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:54:60
chr1	205739993	.	G	GA	419.48	PASS	BaseQRankSum=-2.761;DP=41;FS=0.000;HRun=6;HaplotypeScore=59.8987;MQ=60;MQ0=0;MQRankSum=1.204;QD=10.23;ReadPosRankSum=-0.156;SB=-161.82	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:25,16:41:99:459,0,658:60:99:0.390
chr1	205739994	.	A	.	.	PASS	END=205740033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	205740549	.	T	.	.	PASS	END=205740558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	205740559	.	A	.	.	PASS	END=205740576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	205740577	.	A	.	.	PASS	END=205740590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	205740591	.	G	.	.	PASS	END=205740598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	205740599	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:36:60
chr1	205740600	.	C	.	.	PASS	END=205740611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	205740612	.	G	.	.	PASS	END=205740625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	205740626	.	C	.	.	PASS	END=205740627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:54:60
chr1	205740628	.	G	.	.	PASS	END=205740641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	205740642	.	T	.	.	PASS	END=205740658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	205740659	.	C	.	.	PASS	END=205740699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	205740700	.	G	.	.	PASS	END=205740766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	205740767	.	T	.	.	PASS	END=205740807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	205740808	.	G	.	.	PASS	END=205740824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	205740825	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:48:60
chr1	205740826	.	C	.	.	PASS	END=205740832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	205741573	.	T	.	.	PASS	END=205741583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	205741584	.	A	.	.	PASS	END=205741589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:63:60
chr1	205741590	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:39:60
chr1	205741591	.	T	.	.	PASS	END=205741600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	205741601	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:39:60
chr1	205741602	.	C	.	.	PASS	END=205741609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	205741610	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:58:60
chr1	205741611	.	C	.	.	PASS	END=205741642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:85:60
chr1	205741643	.	A	.	.	PASS	END=205741654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	205741655	.	C	.	.	PASS	END=205741708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	205741709	.	T	.	.	PASS	END=205741746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	205743910	.	G	.	.	PASS	END=205743911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:57:60
chr1	205743912	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:45:60
chr1	205743913	.	C	.	.	PASS	END=205743917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	205743918	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:42:60
chr1	205743919	.	C	.	.	PASS	END=205743921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	205743922	.	C	.	.	PASS	END=205743925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	205743926	.	T	.	.	PASS	END=205743935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	205743936	.	C	.	.	PASS	END=205743942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	205743943	.	A	C	33.79	LowQD;SB	BaseQRankSum=1.050;DP=23;Dels=0.00;FS=19.117;HRun=5;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=0.867;QD=1.47;ReadPosRankSum=-2.237;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:20,3:23:63.78:64,0,508:60:34:0.130
chr1	205743944	.	C	.	.	PASS	END=205743957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	205743958	.	C	.	.	PASS	END=205743961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	205743962	.	T	.	.	PASS	END=205743984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	205743985	.	T	.	.	PASS	END=205744097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:85:60
chr1	205744098	.	T	.	.	PASS	END=205744122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	205744123	.	G	.	.	PASS	END=205744124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	205744125	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:60:60
chr1	205744126	.	C	.	.	PASS	END=205744131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	205744132	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:60
chr1	205744133	.	C	.	.	PASS	END=205744135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	205760610	.	A	.	.	PASS	END=205760625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	205760626	.	G	.	.	PASS	END=205760653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	205760654	.	G	.	.	PASS	END=205760660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	205760661	.	C	.	.	PASS	END=205760687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	205760688	.	C	.	.	PASS	END=205760797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	205760798	.	C	.	.	PASS	END=205760818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	205760819	.	A	.	.	PASS	END=205760837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	205760838	.	A	.	.	PASS	END=205760845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:60
chr1	205760846	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:57:60
chr1	205760847	.	C	.	.	PASS	END=205760875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	205760876	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:87:60
chr1	205760877	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:27:60
chr1	205760878	.	A	.	.	PASS	END=205760884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	205760885	.	C	.	.	PASS	END=205760888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	205760889	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:21:60
chr1	205760890	.	C	.	.	PASS	END=205760897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	205763947	.	C	.	.	PASS	END=205763974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	205763975	.	C	.	.	PASS	END=205764085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	205764086	.	A	.	.	PASS	END=205764106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	205764107	.	A	.	.	PASS	END=205764140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:88:60
chr1	205764141	.	T	.	.	PASS	END=205764193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	205764194	.	T	.	.	PASS	END=205764197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	205764421	.	G	.	.	PASS	END=205764437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:89:60
chr1	205764438	.	C	.	.	PASS	END=205764467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:85:60
chr1	205764468	.	T	.	.	PASS	END=205764485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	205764486	.	G	.	.	PASS	END=205764578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	205764579	.	T	.	.	PASS	END=205764595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	205764596	.	G	.	.	PASS	END=205764629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:78:60
chr1	205764630	.	G	.	.	PASS	END=205764632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	205764633	.	A	.	.	PASS	END=205764639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	205764640	.	G	A	841.89	PASS	DP=27;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=31.18;SB=-114.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,27:27:66.22:875,66,0:60:66:1.000
chr1	205764641	.	A	.	.	PASS	END=205764643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	205764644	.	T	.	.	PASS	END=205764656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	205764657	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:48:60
chr1	205766001	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:75:60
chr1	205766002	.	C	.	.	PASS	END=205766010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	205766011	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:75:60
chr1	205766012	.	C	.	.	PASS	END=205766050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:81:60
chr1	205766051	.	C	.	.	PASS	END=205766140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	205766141	.	C	.	.	PASS	END=205766159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	205766159	.	CA	C	2601.92	PASS	DP=67;FS=0.000;HRun=3;HaplotypeScore=93.0518;MQ=60;MQ0=0;QD=38.83;SB=-935.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,65:67:99:2644,196,0:60:99:0.970
chr1	205766160	.	A	.	.	LowGQX	DP=67;MQ=60;MQ0=0	GT:AD:DP:MQ	.:2:2:60
chr1	205766161	.	A	.	.	PASS	END=205766182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	205766981	.	T	.	.	PASS	END=205766998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	205766999	.	G	.	.	PASS	END=205767018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	205767019	.	G	.	.	PASS	END=205767048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:94:60
chr1	205767049	.	A	.	.	PASS	END=205767070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	205767071	.	G	.	.	PASS	END=205767164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	205767165	.	T	.	.	PASS	END=205767201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	205767202	.	G	.	.	PASS	END=205767220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:84:60
chr1	205767221	.	C	.	.	PASS	END=205767230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	205767746	.	C	.	.	PASS	END=205767753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	205767754	.	A	.	.	PASS	END=205767755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:35:60
chr1	205767756	.	C	.	.	PASS	END=205767766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	205767767	.	C	.	.	PASS	END=205767781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	205767782	.	C	.	.	PASS	END=205767799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	205767800	.	G	.	.	PASS	END=205767825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	205767826	.	C	.	.	PASS	END=205767859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	205767860	.	G	.	.	PASS	END=205767884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	205767885	.	G	A	1133.21	PASS	BaseQRankSum=3.031;DP=120;Dels=0.00;FS=0.797;HRun=0;HaplotypeScore=25.7204;MQ=60;MQ0=0;MQRankSum=-0.335;QD=9.44;ReadPosRankSum=-0.477;SB=-410.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:68,50:120:99:1163,0,1871:60:99:0.424
chr1	205767886	.	T	.	.	PASS	END=205767974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	205767975	.	G	.	.	PASS	END=205767994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	205768034	.	A	.	.	PASS	END=205768087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	205768088	.	G	.	.	PASS	END=205768130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	205768131	.	G	.	.	PASS	END=205768202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	205768203	.	C	.	.	PASS	END=205768238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	205768239	.	G	.	.	PASS	END=205768270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	205768271	.	G	.	.	PASS	END=205768280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	205768836	.	T	.	.	PASS	END=205768865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	205768866	.	C	.	.	PASS	END=205768933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	205768934	.	G	.	.	PASS	END=205768956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	205768957	.	G	.	.	PASS	END=205769001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	205769002	.	G	.	.	PASS	END=205769009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	205770030	.	T	.	.	PASS	END=205770044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	205770045	.	T	.	.	PASS	END=205770085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:84:60
chr1	205770086	.	T	.	.	PASS	END=205770135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	205770136	.	A	.	.	PASS	END=205770189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	205770190	.	T	.	.	PASS	END=205770233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	205770234	.	C	.	.	PASS	END=205770239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	205779147	.	G	.	.	PASS	END=205779156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	205779157	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:45:60
chr1	205779158	.	C	.	.	PASS	END=205779159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	205779160	.	T	.	.	PASS	END=205779163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	205779164	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:2:60
chr1	205779165	.	T	.	.	PASS	END=205779166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	205779167	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	205779168	.	C	.	.	PASS	END=205779169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	205779170	.	G	.	.	PASS	END=205779177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	205779178	.	C	.	.	PASS	END=205779179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	205779180	.	G	.	.	PASS	END=205779185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	205779186	.	C	.	.	PASS	END=205779206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	205779207	.	G	.	.	PASS	END=205779260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	205779261	.	C	.	.	PASS	END=205779292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	205779293	.	C	.	.	PASS	END=205779430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	205779431	.	C	.	.	PASS	END=205779473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	205779474	.	G	.	.	PASS	END=205779495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	205779496	.	G	.	.	PASS	END=205779531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	205779532	.	A	.	.	PASS	END=205779577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	205779578	.	C	.	.	PASS	END=205779588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	205779589	.	A	.	.	PASS	END=205779620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:80:60
chr1	205797746	.	C	.	.	LowGQX	END=205797749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205797750	.	A	.	.	LowGQX	.	GT	./.
chr1	205797751	.	C	.	.	LowGQX	END=205797854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205797855	.	C	.	.	LowGQX	.	GT	./.
chr1	205797856	.	G	.	.	LowGQX	END=205797873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205799406	.	A	.	.	LowGQX	END=205799509	GT	./.
chr1	205801704	.	C	.	.	LowGQX	END=205801885	GT	./.
chr1	205801886	.	T	.	.	LowGQX	END=205801896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205809366	.	C	.	.	LowGQX	END=205809412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205809413	.	G	.	.	LowGQX	.	GT	./.
chr1	205809414	.	T	.	.	LowGQX	END=205809424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205809425	.	C	.	.	LowGQX	.	GT	./.
chr1	205809426	.	T	.	.	LowGQX	END=205809442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205809443	.	G	.	.	LowGQX	END=205809444	GT	./.
chr1	205809445	.	C	.	.	LowGQX	END=205809449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205809450	.	A	.	.	LowGQX	.	GT	./.
chr1	205809451	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205809452	.	C	.	.	LowGQX	.	GT	./.
chr1	205809453	.	T	.	.	LowGQX	END=205809461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205809462	.	A	.	.	LowGQX	.	GT	./.
chr1	205809463	.	A	.	.	LowGQX	END=205809465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205810929	.	G	.	.	LowGQX	END=205811028	GT	./.
chr1	205811263	.	A	.	.	LowGQX	END=205811362	GT	./.
chr1	205811792	.	T	.	.	LowGQX	END=205811891	GT	./.
chr1	205812793	.	A	.	.	LowGQX	END=205812794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205812795	.	C	.	.	LowGQX	.	GT	./.
chr1	205812796	.	G	.	.	LowGQX	END=205812797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205812798	.	C	.	.	LowGQX	END=205812799	GT	./.
chr1	205812800	.	G	.	.	LowGQX	END=205812803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205812804	.	G	.	.	LowGQX	END=205812805	GT	./.
chr1	205812806	.	A	.	.	LowGQX	END=205812809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205812810	.	G	.	.	LowGQX	END=205812811	GT	./.
chr1	205812812	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205812813	.	A	.	.	LowGQX	.	GT	./.
chr1	205812814	.	G	.	.	LowGQX	END=205812816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205812817	.	T	.	.	LowGQX	.	GT	./.
chr1	205812818	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205812819	.	C	.	.	LowGQX	END=205812820	GT	./.
chr1	205812821	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205812822	.	A	.	.	LowGQX	.	GT	./.
chr1	205812823	.	T	.	.	LowGQX	END=205812837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205812838	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	205812839	.	A	.	.	LowGQX	.	GT	./.
chr1	205812840	.	G	.	.	LowGQX	END=205812845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205812846	.	G	.	.	LowGQX	.	GT	./.
chr1	205812847	.	A	.	.	LowGQX	END=205812851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205812852	.	T	.	.	LowGQX	.	GT	./.
chr1	205812853	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205812854	.	G	.	.	LowGQX	END=205812855	GT	./.
chr1	205812856	.	C	.	.	LowGQX	END=205812861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205812862	.	T	.	.	LowGQX	END=205812916	GT	./.
chr1	205813213	.	A	.	.	LowGQX	END=205813347	GT	./.
chr1	205813933	.	C	.	.	LowGQX	END=205814032	GT	./.
chr1	205814451	.	A	.	.	LowGQX	END=205814453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205814454	.	A	.	.	LowGQX	.	GT	./.
chr1	205814455	.	T	.	.	LowGQX	END=205814458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205814459	.	A	.	.	LowGQX	.	GT	./.
chr1	205814460	.	G	.	.	LowGQX	END=205814461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205814462	.	G	.	.	LowGQX	.	GT	./.
chr1	205814463	.	T	.	.	LowGQX	END=205814474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205814475	.	A	.	.	LowGQX	.	GT	./.
chr1	205814476	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205814477	.	T	.	.	LowGQX	.	GT	./.
chr1	205814478	.	G	.	.	LowGQX	END=205814496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205814497	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	205814498	.	G	.	.	LowGQX	END=205814511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205814512	.	A	.	.	LowGQX	.	GT	./.
chr1	205814513	.	C	.	.	LowGQX	END=205814518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205814519	.	G	.	.	LowGQX	.	GT	./.
chr1	205814520	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205814521	.	A	.	.	LowGQX	.	GT	./.
chr1	205814522	.	T	.	.	LowGQX	END=205814588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205814589	.	T	.	.	LowGQX	END=205814687	GT	./.
chr1	205816940	.	A	.	.	LowGQX	END=205817160	GT	./.
chr1	205819030	.	A	.	.	LowGQX	END=205819037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205819038	.	G	.	.	LowGQX	.	GT	./.
chr1	205819039	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	205819040	.	G	.	.	LowGQX	END=205819091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205819092	.	A	.	.	LowGQX	.	GT	./.
chr1	205819093	.	C	.	.	LowGQX	END=205819103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205819104	.	G	A	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	205819105	.	C	.	.	LowGQX	END=205819107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205819108	.	C	.	.	LowGQX	.	GT	./.
chr1	205819109	.	C	.	.	LowGQX	END=205819111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205819112	.	C	.	.	LowGQX	.	GT	./.
chr1	205819113	.	T	.	.	LowGQX	END=205819134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205819135	.	G	.	.	LowGQX	.	GT	./.
chr1	205819136	.	A	.	.	LowGQX	END=205819138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	205819139	.	G	.	.	LowGQX	.	GT	./.
chr1	205819140	.	T	.	.	LowGQX	END=205819152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205819153	.	G	.	.	LowGQX	.	GT	./.
chr1	205819154	.	A	.	.	LowGQX	END=205819168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205819169	.	A	.	.	LowGQX	.	GT	./.
chr1	205819170	.	G	.	.	LowGQX	END=205819176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205819177	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	205819178	.	A	.	.	LowGQX	.	GT	./.
chr1	205819179	.	C	.	.	LowGQX	END=205819189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205819190	.	C	.	.	LowGQX	.	GT	./.
chr1	205819191	.	G	.	.	LowGQX	END=205819194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205819195	.	A	.	.	LowGQX	.	GT	./.
chr1	205819196	.	G	.	.	LowGQX	END=205819202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	205884018	.	C	.	.	PASS	END=205884043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	205884044	.	A	.	.	PASS	END=205884113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	205884114	.	T	.	.	PASS	END=205884160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	205884161	.	T	.	.	PASS	END=205884280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	205884281	.	G	.	.	PASS	END=205884351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	205884352	.	A	.	.	PASS	END=205884424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	205884459	.	A	.	.	PASS	END=205884482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	205884483	.	C	.	.	PASS	END=205884558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	205886397	.	T	.	.	PASS	END=205886429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	205886430	.	C	.	.	PASS	END=205886496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	205887966	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:99:60
chr1	205887967	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:67:60
chr1	205887968	.	C	.	.	PASS	END=205887995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	205887996	.	T	.	.	PASS	END=205888023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	205888024	.	C	.	.	PASS	END=205888115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	205889282	.	C	.	.	PASS	END=205889381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	205890692	.	A	.	.	PASS	END=205890783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	205890784	.	G	.	.	PASS	END=205890808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	205890809	.	C	.	.	PASS	END=205890828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	205890829	.	T	.	.	PASS	END=205890849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	205890850	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:66:60
chr1	205890851	.	G	.	.	PASS	END=205890858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	205890859	.	G	.	.	PASS	END=205890864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	205890865	.	G	.	.	PASS	END=205890869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	205890870	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:72:60
chr1	205890871	.	G	.	.	PASS	END=205890875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	205890876	.	T	.	.	PASS	END=205890883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	205890884	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:33:60
chr1	205890885	.	C	.	.	PASS	END=205890887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	205890888	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:39:60
chr1	205890889	.	G	.	.	PASS	END=205890890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	205890891	.	T	.	17.80	LowGQX	DP=26;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:20:26:0.25:60:0
chr1	205890892	.	G	.	.	PASS	END=205890895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	205890896	.	T	.	.	PASS	END=205890897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	205890898	.	A	.	.	PASS	END=205890899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:36:60
chr1	205890900	.	C	.	.	PASS	END=205890905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	205890906	.	T	G	45.16	SB	BaseQRankSum=-1.303;DP=21;Dels=0.00;FS=3.332;HRun=4;HaplotypeScore=20.9597;MQ=60;MQ0=0;MQRankSum=0.951;QD=2.15;ReadPosRankSum=-0.810;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:10,11:21:75.16:75,0,169:60:45:0.524
chr1	205890907	.	C	.	.	PASS	END=205890908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:60
chr1	205890909	.	G	.	.	PASS	END=205890910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	205890911	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:2:60
chr1	205890912	.	T	.	4.55	LowGQX	DP=22;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:16:22:0.01:60:0
chr1	205890913	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:57:60
chr1	205890914	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:33:60
chr1	205890915	.	T	.	57.08	LowGQX	DP=22;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:17:22:27.09:60:27
chr1	205890916	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:54:60
chr1	205890917	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:39:60
chr1	205890918	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:27:60
chr1	205890919	.	G	.	.	PASS	END=205890922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	205890923	.	T	G	14.12	LowGQX;LowQD;SB	BaseQRankSum=-1.023;DP=23;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=24.8197;MQ=60;MQ0=0;MQRankSum=1.085;QD=0.61;ReadPosRankSum=-0.217;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,10:23:43.94:44,0,158:60:14:0.435
chr1	205890924	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:39:60
chr1	205890925	.	G	.	.	PASS	END=205890926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chr1	205890927	.	T	G	14.44	LowGQX;LowQD;SB	BaseQRankSum=0.661;DP=24;Dels=0.04;FS=3.332;HRun=6;HaplotypeScore=17.1066;MQ=60;MQ0=0;MQRankSum=0.409;QD=0.60;ReadPosRankSum=0.661;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:14,9:23:44.27:44,0,141:60:14:0.391
chr1	205890928	.	G	.	.	PASS	END=205890932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	205890933	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:36:60
chr1	205890934	.	C	.	.	PASS	END=205890935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	205890936	.	C	.	.	PASS	END=205890939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chr1	205890940	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:35:60
chr1	205890941	.	T	.	.	PASS	END=205890942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	205890943	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:63:60
chr1	205890944	.	A	.	.	PASS	END=205890945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:39:60
chr1	205890946	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:57:60
chr1	205890947	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:30:60
chr1	205890948	.	C	.	.	PASS	END=205890958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	205890959	.	T	.	.	PASS	END=205890962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	205890963	.	G	.	.	PASS	END=205890964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	205890965	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:39:60
chr1	205890966	.	G	.	.	PASS	END=205890967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	205890968	.	G	.	.	PASS	END=205890974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	205890975	.	T	G	4.86	LowGQX;LowQD;SB	BaseQRankSum=-1.059;DP=20;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=1.588;QD=0.24;ReadPosRankSum=1.694;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:17,3:20:33.14:33,0,387:60:5:0.150
chr1	205890976	.	C	.	.	PASS	END=205890977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	205892208	.	A	.	.	PASS	END=205892230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	205892231	.	C	.	.	PASS	END=205892246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	205892247	.	G	.	.	PASS	END=205892325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	205892460	.	T	.	.	PASS	END=205892528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	205892529	.	G	.	.	PASS	END=205892559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	205892657	.	G	.	.	PASS	END=205892733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	205892734	.	C	.	.	PASS	END=205892756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	205893509	.	A	.	.	PASS	END=205893564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	205893565	.	C	.	.	PASS	END=205893578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	205893579	.	G	.	.	PASS	END=205893619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	205895661	.	A	.	.	PASS	END=205895688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	205895689	.	G	.	.	PASS	END=205895757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	205895758	.	A	.	.	PASS	END=205895760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	205896328	.	T	.	.	PASS	END=205896349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	205896350	.	G	.	.	PASS	END=205896415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	205896416	.	C	.	.	PASS	END=205896427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	205896618	.	A	.	.	PASS	END=205896666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	205896667	.	C	.	.	PASS	END=205896735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	205897028	.	A	.	.	PASS	END=205897075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	205897076	.	C	.	.	PASS	END=205897132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	205897133	.	A	.	.	PASS	END=205897159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	205897160	.	G	.	.	PASS	END=205897179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	205897947	.	G	.	.	PASS	END=205898037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	205898038	.	C	.	.	PASS	END=205898046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	205898330	.	A	.	.	PASS	END=205898347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	205898348	.	G	.	.	PASS	END=205898400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	205898401	.	C	.	.	PASS	END=205898458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	205898459	.	A	.	.	PASS	END=205898486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	205899018	.	A	.	.	LowGQX	END=205899025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	205899026	.	G	.	.	LowGQX	END=205899032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	205899033	.	C	.	.	LowGQX	END=205899041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	205899042	.	G	.	.	LowGQX	END=205899051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	205899052	.	G	.	.	PASS	END=205899053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	205899054	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	205899055	.	T	.	.	PASS	END=205899063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	205899064	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	205899065	.	G	.	.	PASS	END=205899072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	205899073	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	205899074	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	205899075	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	205899076	.	T	.	.	PASS	END=205899077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	205899078	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	205899079	.	G	.	.	PASS	END=205899080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	205899081	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	205899082	.	C	.	.	PASS	END=205899089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	205899090	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	205899091	.	G	.	.	PASS	END=205899110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	205899111	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	205899112	.	T	.	.	PASS	END=205899148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	205899149	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr1	205899150	.	G	.	.	PASS	END=205899156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	205899157	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr1	205899158	.	G	.	.	PASS	END=205899161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	205899162	.	A	.	.	LowGQX	END=205899163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:27:60
chr1	205899164	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	205899165	.	T	.	.	LowGQX	END=205899166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:27:60
chr1	205899167	.	C	.	.	PASS	END=205899171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	205899172	.	A	.	.	LowGQX	END=205899173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:27:60
chr1	205899174	.	C	.	.	PASS	END=205899176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	205899177	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	205899178	.	G	.	.	PASS	END=205899179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	205899180	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	205899181	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	205899182	.	C	.	.	LowGQX	END=205899186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:27:60
chr1	205900986	.	A	.	.	PASS	END=205901013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	205901014	.	G	.	.	PASS	END=205901060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	205901061	.	A	.	.	PASS	END=205901134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	205901135	.	C	.	.	PASS	END=205901160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	205901161	.	T	.	.	PASS	END=205901165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	205901828	.	A	.	.	PASS	END=205901851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	205901852	.	C	.	.	PASS	END=205901942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	205902071	.	A	.	.	PASS	END=205902114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:97:60
chr1	205902115	.	G	.	.	PASS	END=205902172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	205902173	.	C	.	.	PASS	END=205902214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:87:60
chr1	205904822	.	A	.	.	PASS	END=205904902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	205904903	.	A	.	.	PASS	END=205904931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	205904932	.	G	.	.	PASS	END=205904950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	206137313	.	G	.	.	LowGQX	END=206137411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:20
chr1	206137412	.	T	.	33	LowGQX	DP=2;MQ=25;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:25:3
chr1	206137413	.	G	.	.	LowGQX	END=206137430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	206137431	.	C	.	.	LowGQX	.	GT	./.
chr1	206137432	.	A	.	.	LowGQX	END=206137458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	206137459	.	T	.	.	LowGQX	END=206137486	GT	./.
chr1	206139282	.	C	.	.	LowGQX	END=206139284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	206139285	.	C	.	.	LowGQX	END=206139363	GT	./.
chr1	206139364	.	C	.	.	LowGQX;LowMQ	END=206139458	GT	./.
chr1	206141383	.	T	.	.	LowGQX	END=206141534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr1	206145452	.	A	.	.	LowGQX	END=206145491	GT	./.
chr1	206145492	.	G	.	.	LowGQX	END=206145497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr1	206145498	.	G	.	.	LowGQX;LowMQ	END=206145500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:17
chr1	206145501	.	T	.	32.99	LowGQX;LowMQ	DP=2;MQ=17;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:17:3
chr1	206145502	.	T	.	.	LowGQX;LowMQ	END=206145506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:17
chr1	206145507	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	206145508	.	C	.	32.99	LowGQX;LowMQ	DP=2;MQ=17;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:17:3
chr1	206145509	.	T	.	.	LowGQX;LowMQ	END=206145510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:17
chr1	206145511	.	C	.	32.99	LowGQX;LowMQ	DP=2;MQ=17;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:17:3
chr1	206145512	.	A	.	.	LowGQX;LowMQ	END=206145519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:17
chr1	206145520	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	206145521	.	C	.	.	LowGQX;LowMQ	END=206145530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:17
chr1	206145531	.	T	.	32.99	LowGQX;LowMQ	DP=2;MQ=17;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:17:3
chr1	206145532	.	G	.	.	LowGQX;LowMQ	END=206145536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:17
chr1	206145537	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	206145538	.	C	.	.	LowGQX;LowMQ	END=206145540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:17
chr1	206145541	.	C	.	32.99	LowGQX;LowMQ	DP=2;MQ=17;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:17:3
chr1	206145542	.	C	.	.	LowGQX;LowMQ	END=206145544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:17
chr1	206145545	.	G	.	32.99	LowGQX;LowMQ	DP=2;MQ=17;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:17:3
chr1	206145546	.	C	.	.	LowGQX;LowMQ	END=206145560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:17
chr1	206145561	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	206145562	.	C	.	.	LowGQX;LowMQ	END=206145573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:17
chr1	206145574	.	C	.	32.99	LowGQX;LowMQ	DP=2;MQ=17;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:17:3
chr1	206145575	.	A	.	.	LowGQX;LowMQ	END=206145582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:17
chr1	206145583	.	G	.	32.99	LowGQX;LowMQ	DP=2;MQ=17;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:17:3
chr1	206145584	.	A	.	.	LowGQX;LowMQ	END=206145591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:17
chr1	206145592	.	G	.	32.99	LowGQX;LowMQ	DP=2;MQ=17;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:17:3
chr1	206145593	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:2:3:17
chr1	206145594	.	C	.	32.99	LowGQX;LowMQ	DP=2;MQ=17;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:17:3
chr1	206145595	.	T	.	.	LowGQX;LowMQ	END=206145597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:17
chr1	206145598	.	G	.	32.99	LowGQX;LowMQ	DP=2;MQ=17;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:17:3
chr1	206145599	.	A	.	.	LowGQX;LowMQ	END=206145620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:17
chr1	206153904	.	C	.	.	LowGQX	END=206154054	GT	./.
chr1	206224439	.	T	.	.	PASS	END=206224540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	206224541	.	C	.	.	PASS	END=206224683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	206224684	.	G	.	.	PASS	END=206224757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	206224758	.	G	.	.	PASS	END=206225180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	206225181	.	G	.	.	PASS	END=206225198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:274:99:60
chr1	206225199	.	C	.	.	PASS	END=206225334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:310:99:60
chr1	206225335	.	A	.	.	PASS	END=206225351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr1	206225352	.	C	.	.	PASS	END=206225369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	206225370	.	C	.	.	PASS	END=206225382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	206230806	.	A	.	.	PASS	END=206230860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	206230861	.	T	.	.	PASS	END=206231001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	206231002	.	C	.	.	PASS	END=206231125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	206231126	.	A	.	.	PASS	END=206231144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	206239377	.	A	.	.	LowGQX	END=206239581	GT	./.
chr1	206240115	.	C	.	.	LowGQX	END=206240214	GT	./.
chr1	206241531	.	A	.	.	LowGQX	END=206241678	GT	./.
chr1	206243148	.	A	.	.	LowGQX	END=206243252	GT	./.
chr1	206243448	.	A	.	.	LowGQX	END=206243547	GT	./.
chr1	206317561	.	G	.	.	LowGQX	END=206317660	GT	./.
chr1	206318279	.	C	.	.	LowGQX	END=206318306	GT	./.
chr1	206318307	.	C	.	.	LowGQX	END=206318469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206319099	.	A	.	.	LowGQX	END=206319220	GT	./.
chr1	206320199	.	A	.	.	LowGQX	END=206320321	GT	./.
chr1	206325222	.	G	.	.	LowGQX	END=206325439	GT	./.
chr1	206327472	.	A	.	.	LowGQX	END=206327553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206327554	.	T	.	.	LowGQX	END=206327555	GT	./.
chr1	206327556	.	C	.	.	LowGQX	END=206327566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206327567	.	G	.	.	LowGQX	.	GT	./.
chr1	206327568	.	C	.	.	LowGQX	END=206327598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206328717	.	A	.	.	LowGQX	END=206328862	GT	./.
chr1	206328960	.	A	.	.	LowGQX	END=206329062	GT	./.
chr1	206331019	.	A	.	.	LowGQX	END=206331072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	206331073	.	T	.	.	LowGQX	END=206331161	GT	./.
chr1	206331162	.	G	.	.	LowGQX	END=206331230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206516167	.	C	.	.	PASS	END=206516199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:81:23
chr1	206516200	.	G	.	.	PASS	END=206516243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:23
chr1	206516244	.	T	.	.	PASS	END=206516260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:26
chr1	206516261	.	C	T	1019.82	PASS	BaseQRankSum=1.357;DP=202;Dels=0.00;FS=5.580;HRun=0;HaplotypeScore=19.1890;MQ=31;MQ0=98;MQRankSum=1.589;QD=5.05;ReadPosRankSum=0.567;SB=-312.05	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:124,76:202:99:1050,0,1335:31:99:0.380
chr1	206516262	.	G	.	.	PASS	END=206516290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:31
chr1	206516291	.	G	.	.	PASS	END=206516359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:41
chr1	206516360	.	A	.	.	PASS	END=206516362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:54
chr1	206557349	.	T	.	.	PASS	END=206557369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:24
chr1	206557370	.	G	.	.	PASS	END=206557416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:20
chr1	206557417	.	A	.	.	LowMQ	END=206557438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:87:15
chr1	206557439	.	A	.	.	LowMQ	END=206557448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:72:14
chr1	206565974	.	G	.	.	LowGQX	END=206565979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:31
chr1	206565980	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:6:28
chr1	206565981	.	T	.	.	LowGQX	END=206565987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:26
chr1	206565988	.	C	.	.	LowGQX	END=206565990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:6:25
chr1	206565991	.	A	.	.	LowGQX	END=206565999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:9:25
chr1	206566000	.	C	.	36.01	LowGQX	DP=9;MQ=25;MQ0=4	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:6.02:25:6
chr1	206566001	.	C	.	.	LowGQX	END=206566006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:9:25
chr1	206566007	.	G	.	.	LowGQX	END=206566009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:3:25
chr1	206566010	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:25
chr1	206566011	.	G	.	.	LowGQX	END=206566012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:6:25
chr1	206566013	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:25
chr1	206566014	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:3:25
chr1	206566015	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:25
chr1	206566016	.	C	.	.	LowGQX	END=206566024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:3:22
chr1	206566025	.	G	.	.	LowGQX	END=206566034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:9:27
chr1	206566035	.	A	.	.	LowGQX	END=206566036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:32
chr1	206566037	.	G	.	.	LowGQX	END=206566038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:31
chr1	206566039	.	C	.	.	LowGQX	END=206566047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:31
chr1	206566048	.	G	C	69.14	SB	BaseQRankSum=0.470;DP=14;Dels=0.00;FS=3.522;HRun=0;HaplotypeScore=0.0000;MQ=34;MQ0=4;MQRankSum=-2.450;QD=4.94;ReadPosRankSum=-1.668;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:5,9:14:99:99,0,148:34:69:0.643
chr1	206566049	.	A	.	.	LowGQX	END=206566060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:34
chr1	206566061	.	C	.	.	PASS	END=206566062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:36
chr1	206566063	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:36
chr1	206566064	.	A	.	.	PASS	END=206566073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:35
chr1	206566074	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:1:36
chr1	206566075	.	C	.	.	PASS	END=206566082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:34
chr1	206566083	.	T	.	.	PASS	END=206566120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:34
chr1	206566121	.	G	.	.	PASS	END=206566145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:36:35
chr1	206566146	.	T	.	.	PASS	END=206566152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:33:37
chr1	206566153	.	G	.	.	PASS	END=206566168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:42:37
chr1	206566169	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:17:38
chr1	206566170	.	C	.	.	PASS	END=206566181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:48:37
chr1	206566182	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:25:37
chr1	206566183	.	C	.	.	PASS	END=206566222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:37
chr1	206566223	.	A	.	.	PASS	END=206566235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:36
chr1	206566236	.	A	.	.	PASS	END=206566241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:37
chr1	206566242	.	T	.	.	PASS	END=206566258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:37
chr1	206566259	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:38
chr1	206566260	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:38
chr1	206566261	.	G	.	.	LowGQX	END=206566262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:38
chr1	206566263	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:38
chr1	206566264	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:38
chr1	206566265	.	T	.	.	PASS	END=206566271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:37
chr1	206566272	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:40
chr1	206566273	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:40
chr1	206566274	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:40
chr1	206566275	.	C	.	.	LowGQX	END=206566278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:40
chr1	206566279	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:40
chr1	206566280	.	C	.	.	LowGQX	END=206566287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:40
chr1	206566288	.	G	.	.	LowGQX	END=206566292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:44
chr1	206566293	.	G	.	.	LowGQX	END=206566297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:44
chr1	206566298	.	A	.	.	LowGQX	END=206566303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:43
chr1	206566304	.	C	.	.	LowGQX	END=206566309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:42
chr1	206566310	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:43
chr1	206566311	.	G	.	.	LowGQX	END=206566315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:43
chr1	206566316	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:43
chr1	206566317	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:42
chr1	206566318	.	T	.	.	LowGQX	END=206566320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:41
chr1	206566321	.	T	.	.	LowGQX	END=206566323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:41
chr1	206566901	.	G	.	.	PASS	END=206566902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:52
chr1	206566903	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:126:59:52
chr1	206566904	.	T	C	967.44	PASS	BaseQRankSum=2.057;DP=126;Dels=0.00;FS=8.458;HRun=1;HaplotypeScore=35.4029;MQ=52;MQ0=0;MQRankSum=-8.113;QD=7.68;ReadPosRankSum=-0.146;SB=-551.48	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:69,55:126:99:997,0,1425:52:99:0.444
chr1	206566905	.	C	.	.	PASS	END=206566927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:52
chr1	206566928	.	G	.	.	PASS	END=206567005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:52
chr1	206567006	.	C	.	.	PASS	END=206567030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:54
chr1	206574708	.	T	.	.	PASS	END=206574710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:63:24
chr1	206574711	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:33:24
chr1	206574712	.	C	.	.	PASS	END=206574713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:57:24
chr1	206574714	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:42:24
chr1	206574715	.	C	.	.	PASS	END=206574719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:48:22
chr1	206574720	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:70:24:22
chr1	206574721	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:70:45:22
chr1	206574722	.	T	.	.	PASS	END=206574725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:60:20
chr1	206574726	.	T	.	.	LowMQ	END=206574735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:54:16
chr1	206574736	.	T	.	.	LowMQ	END=206574742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:63:16
chr1	206574743	.	G	.	.	LowMQ	END=206574766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:81:14
chr1	206574767	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:168:99:14
chr1	206574768	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:168:71:14
chr1	206574769	.	C	.	.	LowMQ	END=206574783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:95:14
chr1	206574784	.	G	.	.	LowMQ	END=206574849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:13
chr1	206574850	.	A	.	.	LowMQ	END=206574894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:299:99:11
chr1	206574895	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:296:68:10
chr1	206574896	.	A	.	.	LowMQ	END=206574931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:81:10
chr1	206574932	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:245:65:12
chr1	206574933	.	C	.	.	LowMQ	END=206574955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:87:12
chr1	206574956	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:200:74:14
chr1	206574957	.	T	.	.	LowMQ	END=206575000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:83:14
chr1	206575001	.	T	.	.	LowMQ	END=206575007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:18
chr1	206575008	.	A	.	.	PASS	END=206575024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:20
chr1	206575025	.	C	.	.	PASS	END=206575038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:24
chr1	206575039	.	G	.	.	PASS	END=206575067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:28
chr1	206578607	.	G	.	.	LowGQX;LowMQ	END=206578617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:3:2
chr1	206578618	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	206578619	.	C	.	.	LowGQX;LowMQ	END=206578642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:3:2
chr1	206578643	.	T	.	.	LowGQX;LowMQ	END=206578765	GT	./.
chr1	206579664	.	C	.	.	LowMQ	END=206579700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:403:99:14
chr1	206579701	.	C	.	.	LowMQ	END=206579797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:455:99:12
chr1	206579798	.	T	C	1366.07	LowMQ;SB	BaseQRankSum=0.491;DP=463;Dels=0.00;FS=89.109;HRun=0;HaplotypeScore=25.7181;MQ=13;MQ0=349;MQRankSum=-0.922;QD=2.95;ReadPosRankSum=0.543;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:245,216:463:99:1396,0,1262:13:99:0.469
chr1	206579799	.	G	.	.	LowMQ	END=206579888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:421:99:13
chr1	206579889	.	A	.	.	LowMQ	END=206579908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:458:99:17
chr1	206579909	.	A	.	.	PASS	END=206579935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:462:99:20
chr1	206579936	.	A	G	1992.45	PASS	BaseQRankSum=-4.433;DP=563;Dels=0.00;FS=2.680;HRun=0;HaplotypeScore=19.8853;MQ=24;MQ0=240;MQRankSum=0.091;QD=3.54;ReadPosRankSum=0.378;SB=-1129.85	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:387,174:563:99:2022,0,4624:24:99:0.310
chr1	206579937	.	A	.	.	PASS	END=206579987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:440:99:24
chr1	206579988	.	G	.	.	PASS	END=206580013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:393:99:31
chr1	206589181	.	G	.	.	PASS	END=206589206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	206589207	.	T	.	.	PASS	END=206589254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	206589255	.	A	.	.	PASS	END=206589308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	206589309	.	C	.	.	PASS	END=206589336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	206589337	.	A	.	.	PASS	END=206589340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	206592689	.	T	.	.	PASS	END=206592762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:322:99:60
chr1	206592763	.	C	.	.	PASS	END=206592788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:60
chr1	206594563	.	T	.	.	PASS	END=206594593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:266:99:60
chr1	206594594	.	G	.	.	PASS	END=206594639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	206594640	.	G	.	.	PASS	END=206594662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	206603492	.	G	.	.	PASS	END=206603534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:259:99:60
chr1	206603535	.	G	A	3401.22	PASS	BaseQRankSum=2.242;DP=259;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=27.6591;MQ=60;MQ0=0;MQRankSum=-0.620;QD=13.13;ReadPosRankSum=-0.765;SB=-1677.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:127,129:259:99:3401,0,3259:60:99:0.504
chr1	206603536	.	G	.	.	PASS	END=206603579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	206603580	.	G	.	.	PASS	END=206603591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	206610304	.	T	.	.	PASS	END=206610360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	206610361	.	A	.	.	PASS	END=206610403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	206611313	.	G	.	.	PASS	END=206611448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	206613325	.	G	.	.	PASS	END=206613431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	206619420	.	G	.	.	PASS	END=206619429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	206619430	.	G	.	.	PASS	END=206619453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	206619454	.	C	.	.	PASS	END=206619468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	206619469	.	C	.	.	PASS	END=206619506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	206619507	.	G	.	.	PASS	END=206619607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	206619608	.	C	.	.	PASS	END=206619619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	206619620	.	A	.	.	PASS	END=206619645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:84:60
chr1	206623721	.	T	.	.	PASS	END=206623794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	206623795	.	C	.	.	PASS	END=206623819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	206623820	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:77:99:60
chr1	206626545	.	G	.	.	PASS	END=206626579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	206626580	.	C	.	.	PASS	END=206626606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	206626607	.	G	A	2065.88	PASS	BaseQRankSum=3.166;DP=160;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=8.7650;MQ=60;MQ0=0;MQRankSum=1.712;QD=12.91;ReadPosRankSum=0.818;SB=-1236.66	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:78,82:160:99:2096,0,1944:60:99:0.513
chr1	206626608	.	T	.	.	PASS	END=206626714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	206626715	.	G	.	.	PASS	END=206626726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	206627446	.	G	.	.	LowGQX	END=206627545	GT	./.
chr1	206628223	.	G	.	.	PASS	END=206628250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	206628251	.	C	.	.	PASS	END=206628319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	206628320	.	C	.	.	PASS	END=206628384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	206628385	.	T	.	.	PASS	END=206628421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	206631686	.	C	.	.	LowGQX	END=206631692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	206631693	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	206631694	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	206631695	.	A	.	.	LowGQX	END=206631696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	206631697	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:60
chr1	206631698	.	C	.	.	LowGQX	END=206631700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	206631701	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:60
chr1	206631702	.	C	.	.	LowGQX	END=206631705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	206631706	.	T	.	.	LowGQX	END=206631709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	206631710	.	C	.	.	LowGQX	END=206631712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	206631713	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	206631714	.	C	.	.	LowGQX	END=206631715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	206631716	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	206631717	.	C	.	.	LowGQX	END=206631720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	206631721	.	T	.	.	LowGQX	END=206631726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	206631727	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	206631728	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	206631729	.	T	.	.	LowGQX	END=206631730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	206631731	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	206631732	.	C	.	.	LowGQX	END=206631739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	206631740	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:1:60
chr1	206631741	.	G	.	.	LowGQX	END=206631748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	206631749	.	C	.	.	LowGQX	END=206631759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	206631760	.	G	.	.	PASS	END=206631781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	206631782	.	G	.	.	PASS	END=206631785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	206631968	.	G	.	.	PASS	END=206632136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	206632137	.	G	.	.	PASS	END=206632248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	206632249	.	A	.	.	PASS	END=206632293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	206634381	.	G	.	.	PASS	END=206634405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	206634406	.	G	.	.	PASS	END=206634442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	206634443	.	G	.	.	PASS	END=206634529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	206634530	.	G	.	.	PASS	END=206634664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr1	206634665	.	C	.	.	PASS	END=206634682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	206634683	.	T	.	.	PASS	END=206634720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	206634721	.	T	.	.	PASS	END=206634739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	206634740	.	C	.	.	PASS	END=206634757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	206634758	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:74:99:60
chr1	206634759	.	T	.	.	PASS	END=206634765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	206646509	.	T	.	.	LowGQX	END=206646664	GT	./.
chr1	206647672	.	A	.	.	LowGQX	END=206647816	GT	./.
chr1	206648206	.	A	.	.	LowGQX	END=206648218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	206648219	.	G	.	.	LowGQX	.	GT	./.
chr1	206648220	.	C	.	.	LowGQX	END=206648221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	206648222	.	G	.	.	LowGQX	.	GT	./.
chr1	206648223	.	A	.	.	LowGQX	END=206648224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	206648225	.	G	.	.	LowGQX	END=206648227	GT	./.
chr1	206648228	.	A	.	.	LowGQX	END=206648245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	206648246	.	C	.	.	LowGQX	.	GT	./.
chr1	206648247	.	T	.	.	LowGQX	END=206648258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206648259	.	C	.	.	LowGQX	.	GT	./.
chr1	206648260	.	T	.	.	LowGQX	END=206648264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206648265	.	A	.	.	LowGQX	.	GT	./.
chr1	206648266	.	G	.	.	LowGQX	END=206648270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206648271	.	C	.	.	LowGQX	END=206648272	GT	./.
chr1	206648273	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206648274	.	G	.	.	LowGQX	END=206648275	GT	./.
chr1	206648276	.	G	.	.	LowGQX	END=206648277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206648278	.	G	.	.	LowGQX	.	GT	./.
chr1	206648279	.	C	.	.	LowGQX	END=206648280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206648281	.	C	.	.	LowGQX	.	GT	./.
chr1	206648282	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206648283	.	G	.	.	LowGQX	.	GT	./.
chr1	206648284	.	A	.	.	LowGQX	END=206648285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206648286	.	A	.	.	LowGQX	.	GT	./.
chr1	206648287	.	A	.	.	LowGQX	END=206648290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206648291	.	C	.	.	LowGQX	.	GT	./.
chr1	206648292	.	T	.	.	LowGQX	END=206648295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206648296	.	G	.	.	LowGQX	.	GT	./.
chr1	206648297	.	G	.	.	LowGQX	END=206648306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206648307	.	G	.	.	LowGQX	.	GT	./.
chr1	206648308	.	A	.	.	LowGQX	END=206648314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206648315	.	C	.	.	LowGQX	.	GT	./.
chr1	206648316	.	C	.	.	LowGQX	END=206648320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206648321	.	G	.	.	LowGQX	.	GT	./.
chr1	206648322	.	G	.	.	LowGQX	END=206648326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206648327	.	G	.	.	LowGQX	END=206648328	GT	./.
chr1	206648329	.	G	.	.	LowGQX	END=206648336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206648337	.	G	.	.	LowGQX	.	GT	./.
chr1	206648338	.	G	.	.	LowGQX	END=206648339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206649502	.	T	.	.	LowGQX	END=206649568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206649569	.	A	.	.	LowGQX	.	GT	./.
chr1	206649570	.	C	.	.	LowGQX	END=206649583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206649584	.	A	.	.	LowGQX	.	GT	./.
chr1	206649585	.	C	.	.	LowGQX	END=206649613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206649614	.	A	.	.	LowGQX	.	GT	./.
chr1	206649615	.	G	.	.	LowGQX	END=206649631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206649632	.	C	.	.	LowGQX	.	GT	./.
chr1	206649633	.	A	.	.	LowGQX	END=206649647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206649648	.	C	.	.	LowGQX	.	GT	./.
chr1	206649649	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206649650	.	G	.	.	LowGQX	.	GT	./.
chr1	206649651	.	G	.	.	LowGQX	END=206649654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206649655	.	C	.	.	LowGQX	.	GT	./.
chr1	206649656	.	T	.	.	LowGQX	END=206649673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206649674	.	T	.	.	LowGQX	.	GT	./.
chr1	206649675	.	C	.	.	LowGQX	END=206649701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	206649702	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	206649703	.	C	.	.	LowGQX	END=206649705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	206649706	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	206649707	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	206650019	.	A	.	.	LowGQX	END=206650107	GT	./.
chr1	206650108	.	A	.	.	LowGQX	END=206650183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	206651090	.	A	.	.	LowGQX	END=206651249	GT	./.
chr1	206651501	.	A	.	.	LowGQX	END=206651684	GT	./.
chr1	206652273	.	C	.	.	LowGQX	END=206652478	GT	./.
chr1	206653136	.	G	.	.	LowGQX	END=206653140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206653141	.	C	.	.	LowGQX	END=206653142	GT	./.
chr1	206653143	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206653144	.	G	.	.	LowGQX	END=206653146	GT	./.
chr1	206653147	.	A	.	.	LowGQX	END=206653158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206653159	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	206653160	.	A	.	.	LowGQX	END=206653162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206653163	.	C	.	.	LowGQX	.	GT	./.
chr1	206653164	.	G	.	.	LowGQX	END=206653165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206653166	.	C	.	.	LowGQX	.	GT	./.
chr1	206653167	.	C	.	.	LowGQX	END=206653168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206653169	.	A	.	.	LowGQX	.	GT	./.
chr1	206653170	.	G	.	.	LowGQX	END=206653178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206653179	.	A	.	.	LowGQX	END=206653511	GT	./.
chr1	206653784	.	G	.	.	LowGQX	END=206653876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	206653877	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	206653878	.	T	.	.	LowGQX	END=206653883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	206658322	.	G	.	.	LowGQX	END=206658421	GT	./.
chr1	206658529	.	A	.	.	LowGQX	END=206658645	GT	./.
chr1	206661240	.	C	.	.	LowGQX	END=206661339	GT	./.
chr1	206664122	.	G	.	.	LowGQX	END=206664221	GT	./.
chr1	206664979	.	A	.	.	LowGQX	END=206665084	GT	./.
chr1	206665720	.	C	.	.	LowGQX	END=206665735	GT	./.
chr1	206665736	.	G	.	.	LowGQX	END=206665895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206665896	.	C	G	47.39	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=23.69;SB=-38.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:79,6,0:60:6:1.000
chr1	206665897	.	C	.	.	LowGQX	END=206665956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206665957	.	A	.	.	LowGQX	.	GT	./.
chr1	206665958	.	C	.	.	LowGQX	END=206665959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206665960	.	T	.	.	LowGQX	.	GT	./.
chr1	206665961	.	A	.	.	LowGQX	END=206665969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206665970	.	A	.	.	LowGQX	.	GT	./.
chr1	206665971	.	G	.	.	LowGQX	END=206665975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206665976	.	T	.	.	LowGQX	.	GT	./.
chr1	206665977	.	T	.	.	LowGQX	END=206665980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206665981	.	A	.	.	LowGQX	.	GT	./.
chr1	206665982	.	C	.	.	LowGQX	END=206666009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206666010	.	A	.	.	LowGQX	.	GT	./.
chr1	206666011	.	C	.	.	LowGQX	END=206666021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206666022	.	C	.	.	LowGQX	END=206666106	GT	./.
chr1	206666107	.	A	.	.	LowGQX	END=206666112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206666113	.	G	.	.	LowGQX	END=206666114	GT	./.
chr1	206666115	.	T	.	.	LowGQX	END=206666116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206666117	.	T	.	.	LowGQX	END=206666118	GT	./.
chr1	206666119	.	G	.	.	LowGQX	END=206666120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206666121	.	T	.	.	LowGQX	.	GT	./.
chr1	206666122	.	G	.	.	LowGQX	END=206666138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206666139	.	T	.	.	LowGQX	.	GT	./.
chr1	206666140	.	G	.	.	LowGQX	END=206666144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206666145	.	G	.	.	LowGQX	.	GT	./.
chr1	206666146	.	G	.	.	LowGQX	END=206666173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206666174	.	T	.	.	LowGQX	.	GT	./.
chr1	206666175	.	T	.	.	LowGQX	END=206666176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206666177	.	T	.	.	LowGQX	.	GT	./.
chr1	206666178	.	G	.	.	LowGQX	END=206666204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206666205	.	T	.	.	LowGQX	.	GT	./.
chr1	206666206	.	G	.	.	LowGQX	END=206666257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206666258	.	C	.	.	LowGQX	END=206666454	GT	./.
chr1	206666597	.	A	.	.	LowGQX	END=206666713	GT	./.
chr1	206667239	.	T	.	.	LowGQX	END=206667250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206667251	.	A	.	.	LowGQX	END=206667338	GT	./.
chr1	206669412	.	G	.	.	LowGQX	END=206669481	GT	./.
chr1	206669482	.	C	.	.	LowGQX	END=206669484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206669485	.	T	.	.	LowGQX	.	GT	./.
chr1	206669486	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206669487	.	G	.	.	LowGQX	END=206669488	GT	./.
chr1	206669489	.	G	.	.	LowGQX	END=206669500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206669501	.	T	.	.	LowGQX	.	GT	./.
chr1	206669502	.	C	.	.	LowGQX	END=206669503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206669504	.	T	.	.	LowGQX	.	GT	./.
chr1	206669505	.	G	.	.	LowGQX	END=206669511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206670926	.	C	.	.	LowGQX	END=206670932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206670933	.	G	.	.	LowGQX	.	GT	./.
chr1	206670934	.	G	.	.	LowGQX	END=206670948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206670949	.	A	.	.	LowGQX	.	GT	./.
chr1	206670950	.	G	.	.	LowGQX	END=206670958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206670959	.	C	.	.	LowGQX	.	GT	./.
chr1	206670960	.	T	.	.	LowGQX	END=206670972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206670973	.	C	.	.	LowGQX	.	GT	./.
chr1	206670974	.	C	.	.	LowGQX	END=206670983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206670984	.	C	.	.	LowGQX	.	GT	./.
chr1	206670985	.	T	.	.	LowGQX	END=206670995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206670996	.	A	.	.	LowGQX	END=206670997	GT	./.
chr1	206670998	.	G	.	.	LowGQX	END=206671050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206680923	.	C	.	.	LowGQX	END=206681394	GT	./.
chr1	206711499	.	A	.	.	LowGQX	END=206711624	GT	./.
chr1	206730900	.	A	.	.	LowGQX	END=206731023	GT	./.
chr1	206756599	.	A	.	.	LowGQX	END=206756617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206756618	.	G	.	.	LowGQX	END=206756619	GT	./.
chr1	206756620	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206756621	.	G	.	.	LowGQX	.	GT	./.
chr1	206756622	.	G	.	.	LowGQX	END=206756627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206756628	.	C	.	.	LowGQX	END=206756662	GT	./.
chr1	206756663	.	G	.	.	LowGQX	END=206756669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206756670	.	A	.	.	LowGQX	.	GT	./.
chr1	206756671	.	G	.	.	LowGQX	END=206756677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206756678	.	C	.	.	LowGQX	.	GT	./.
chr1	206756679	.	A	.	.	LowGQX	END=206756691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206756692	.	A	.	.	LowGQX	.	GT	./.
chr1	206756693	.	C	.	.	LowGQX	END=206756698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206756699	.	G	.	.	LowGQX	END=206756700	GT	./.
chr1	206756701	.	G	.	.	LowGQX	END=206756713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206757717	.	A	.	.	LowGQX	END=206758073	GT	./.
chr1	206758074	.	C	.	.	LowGQX	END=206758076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206758077	.	T	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	206758078	.	C	.	.	LowGQX	END=206758081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206758510	.	A	.	.	LowGQX	END=206758663	GT	./.
chr1	206760156	.	A	.	.	LowGQX	END=206760277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	206760278	.	G	.	.	LowGQX	END=206760285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	206760286	.	A	.	.	LowGQX	END=206760380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	206760381	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	206760382	.	A	.	.	LowGQX	END=206760390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	206765093	.	G	.	.	LowGQX	END=206765192	GT	./.
chr1	206766966	.	A	.	.	LowGQX	END=206767144	GT	./.
chr1	206769065	.	A	.	.	LowGQX	END=206769086	GT	./.
chr1	206769087	.	G	.	.	LowGQX	END=206769189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206770448	.	A	.	.	LowGQX	END=206770547	GT	./.
chr1	206772352	.	C	.	.	LowGQX	END=206772371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206772372	.	T	.	.	LowGQX	.	GT	./.
chr1	206772373	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206772374	.	A	.	.	LowGQX	END=206772375	GT	./.
chr1	206772376	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206772377	.	C	.	.	LowGQX	.	GT	./.
chr1	206772378	.	A	.	.	LowGQX	END=206772380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206772381	.	T	.	.	LowGQX	.	GT	./.
chr1	206772382	.	C	.	.	LowGQX	END=206772390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206772391	.	T	.	.	LowGQX	.	GT	./.
chr1	206772392	.	G	.	.	LowGQX	END=206772393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206772394	.	C	.	.	LowGQX	.	GT	./.
chr1	206772395	.	G	.	.	LowGQX	END=206772401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206772402	.	A	.	.	LowGQX	.	GT	./.
chr1	206772403	.	T	.	.	LowGQX	END=206772412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206772413	.	T	.	.	LowGQX	.	GT	./.
chr1	206772414	.	C	.	.	LowGQX	END=206772426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206772427	.	C	.	.	LowGQX	.	GT	./.
chr1	206772428	.	C	.	.	LowGQX	END=206772432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206772433	.	G	.	.	LowGQX	.	GT	./.
chr1	206772434	.	A	.	.	LowGQX	END=206772437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206772438	.	C	.	.	LowGQX	.	GT	./.
chr1	206772439	.	T	.	.	LowGQX	END=206772443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206772444	.	T	.	.	LowGQX	.	GT	./.
chr1	206772445	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206772446	.	C	.	.	LowGQX	.	GT	./.
chr1	206772447	.	C	.	.	LowGQX	END=206772451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206772785	.	A	.	.	LowGQX	END=206772968	GT	./.
chr1	206773085	.	A	.	.	LowGQX	END=206773192	GT	./.
chr1	206773590	.	G	.	.	LowGQX	END=206773689	GT	./.
chr1	206775688	.	A	.	.	LowGQX	END=206775706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206775707	.	G	.	.	LowGQX	.	GT	./.
chr1	206775708	.	C	.	.	LowGQX	END=206775724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206775725	.	G	.	.	LowGQX	.	GT	./.
chr1	206775726	.	G	.	.	LowGQX	END=206775727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206775728	.	G	.	.	LowGQX	.	GT	./.
chr1	206775729	.	A	.	.	LowGQX	END=206775732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206775733	.	A	.	.	LowGQX	.	GT	./.
chr1	206775734	.	A	.	.	LowGQX	END=206775761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206775762	.	T	.	.	LowGQX	.	GT	./.
chr1	206775763	.	T	.	.	LowGQX	END=206775766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206775767	.	G	.	.	LowGQX	.	GT	./.
chr1	206775768	.	G	.	.	LowGQX	END=206775769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206775770	.	A	.	.	LowGQX	.	GT	./.
chr1	206775771	.	T	.	.	LowGQX	END=206775775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206775776	.	G	.	.	LowGQX	.	GT	./.
chr1	206775777	.	A	.	.	LowGQX	END=206775779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206775780	.	C	.	.	LowGQX	.	GT	./.
chr1	206775781	.	A	.	.	LowGQX	END=206775784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206775785	.	C	.	.	LowGQX	.	GT	./.
chr1	206775786	.	T	.	.	LowGQX	END=206775800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206775801	.	A	.	.	LowGQX	.	GT	./.
chr1	206775802	.	T	.	.	LowGQX	END=206775809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206776303	.	A	.	.	LowGQX	END=206776560	GT	./.
chr1	206778751	.	A	.	.	LowGQX	END=206778862	GT	./.
chr1	206781585	.	G	.	.	LowGQX	END=206781633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206781634	.	T	.	.	LowGQX	END=206781684	GT	./.
chr1	206782721	.	C	.	.	LowGQX	END=206782820	GT	./.
chr1	206784535	.	A	.	.	LowGQX	END=206784679	GT	./.
chr1	206784680	.	G	.	.	LowGQX	END=206784729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206785618	.	G	.	.	LowGQX	END=206785717	GT	./.
chr1	206800007	.	A	.	.	LowGQX	END=206800166	GT	./.
chr1	206808986	.	G	.	.	LowGQX	END=206809092	GT	./.
chr1	206809093	.	G	.	.	LowGQX	END=206809137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206809432	.	T	.	.	LowGQX	END=206809433	GT	./.
chr1	206809434	.	T	.	.	LowGQX	END=206809436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206809437	.	T	.	.	LowGQX	.	GT	./.
chr1	206809438	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206809439	.	G	.	.	LowGQX	END=206809443	GT	./.
chr1	206809444	.	T	.	.	LowGQX	END=206809449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206809450	.	T	.	.	LowGQX	.	GT	./.
chr1	206809451	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206809452	.	A	.	.	LowGQX	END=206809453	GT	./.
chr1	206809454	.	G	.	.	LowGQX	END=206809457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206809458	.	G	.	.	LowGQX	.	GT	./.
chr1	206809459	.	G	.	.	LowGQX	END=206809479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206809480	.	G	.	.	LowGQX	.	GT	./.
chr1	206809481	.	G	.	.	LowGQX	END=206809494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206809495	.	T	.	.	LowGQX	.	GT	./.
chr1	206809496	.	G	.	.	LowGQX	END=206809497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206809498	.	T	.	.	LowGQX	.	GT	./.
chr1	206809499	.	T	.	.	LowGQX	END=206809506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206809507	.	A	.	.	LowGQX	.	GT	./.
chr1	206809508	.	T	.	.	LowGQX	END=206809509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206809510	.	A	.	.	LowGQX	.	GT	./.
chr1	206809511	.	C	.	.	LowGQX	END=206809513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206809514	.	A	.	.	LowGQX	.	GT	./.
chr1	206809515	.	C	.	.	LowGQX	END=206809522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206809523	.	C	.	.	LowGQX	.	GT	./.
chr1	206809524	.	T	.	.	LowGQX	END=206809531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206810256	.	C	.	.	LowGQX	END=206810355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206810993	.	A	.	.	LowGQX	END=206811108	GT	./.
chr1	206820731	.	A	.	.	LowGQX	END=206820757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206820758	.	A	.	.	LowGQX	END=206822031	GT	./.
chr1	206822032	.	G	.	.	LowGQX	END=206822059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206822060	.	A	.	.	LowGQX	.	GT	./.
chr1	206822061	.	C	.	.	LowGQX	END=206822098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206822099	.	A	.	.	LowGQX	.	GT	./.
chr1	206822100	.	C	.	.	LowGQX	END=206822139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206822140	.	A	.	.	LowGQX	.	GT	./.
chr1	206822141	.	T	.	.	LowGQX	END=206822182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206822183	.	C	.	.	LowGQX	END=206822232	GT	./.
chr1	206822233	.	A	.	.	LowGQX	END=206822312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206856241	.	T	.	.	LowGQX	END=206856340	GT	./.
chr1	206858513	.	C	.	.	LowGQX	END=206858862	GT	./.
chr1	206902053	.	A	.	.	LowGQX	END=206902066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206902067	.	T	.	.	LowGQX	END=206902196	GT	./.
chr1	206902363	.	C	.	.	LowGQX	END=206902462	GT	./.
chr1	206902731	.	C	.	.	LowGQX	END=206902830	GT	./.
chr1	206903315	.	A	.	.	LowGQX	END=206903445	GT	./.
chr1	206904021	.	T	.	.	LowGQX	END=206904120	GT	./.
chr1	206904481	.	A	.	.	LowGQX	END=206904487	GT	./.
chr1	206904488	.	G	.	.	LowGQX	END=206904609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206904978	.	C	.	.	LowGQX	END=206905023	GT	./.
chr1	206905024	.	C	.	.	LowGQX	END=206905077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206905175	.	T	.	.	LowGQX	END=206905274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	206905360	.	T	.	.	LowGQX	END=206905422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	206905423	.	T	.	.	LowGQX	END=206905459	GT	./.
chr1	206905918	.	A	.	.	LowGQX	END=206906065	GT	./.
chr1	206941930	.	G	.	.	PASS	END=206941934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	206941935	.	C	.	.	PASS	END=206941961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	206941962	.	G	.	.	PASS	END=206942002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	206942003	.	A	.	.	PASS	END=206942084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	206942085	.	G	.	.	PASS	END=206942124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	206943123	.	G	.	.	PASS	END=206943132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	206943133	.	G	.	.	PASS	END=206943140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	206943141	.	C	.	.	PASS	END=206943156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	206943157	.	C	.	.	PASS	END=206943191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	206943192	.	C	.	.	PASS	END=206943290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	206944201	.	A	.	.	PASS	END=206944223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	206944224	.	C	.	.	PASS	END=206944232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	206944233	.	A	G	961.64	PASS	DP=36;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=26.71;SB=-496.96	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,36:36:75.23:995,75,0:60:75:1.000
chr1	206944234	.	A	.	.	PASS	END=206944242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	206944243	.	G	.	.	PASS	END=206944247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	206944248	.	T	.	.	PASS	END=206944268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:84:60
chr1	206944269	.	G	.	.	PASS	END=206944295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	206944296	.	G	.	.	PASS	END=206944393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	206944394	.	C	.	.	PASS	END=206944411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	206944412	.	C	.	.	PASS	END=206944424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	206944425	.	T	.	.	PASS	END=206944455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	206944650	.	C	.	.	PASS	END=206944661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	206944662	.	A	.	.	PASS	END=206944673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	206944674	.	C	.	.	PASS	END=206944786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	206944787	.	A	.	.	PASS	END=206944811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	206945565	.	A	.	.	PASS	END=206945575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:90:60
chr1	206945576	.	T	.	.	PASS	END=206945610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	206945611	.	C	.	.	PASS	END=206945633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	206945634	.	G	.	.	PASS	END=206945705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	206945706	.	C	.	.	PASS	END=206945725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	206945726	.	T	.	.	PASS	END=206945753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	206945754	.	G	.	.	PASS	END=206945773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	206945774	.	T	.	.	PASS	END=206945781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	206945782	.	C	.	.	PASS	END=206945783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	206945784	.	T	.	.	PASS	END=206945798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	206945799	.	G	.	.	PASS	END=206945807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	206945808	.	T	.	.	PASS	END=206945829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	206945830	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	206945831	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	206972238	.	G	.	.	PASS	END=206972313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	206972314	.	T	.	.	PASS	END=206972362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	206972363	.	C	.	.	PASS	END=206972388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	206972389	.	C	.	.	PASS	END=206972397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	207010004	.	A	.	.	PASS	END=207010013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	207010014	.	T	.	.	PASS	END=207010046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	207010047	.	A	.	.	PASS	END=207010078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	207010079	.	T	.	.	PASS	END=207010174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	207010175	.	T	.	.	PASS	END=207010193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	207010286	.	T	.	.	PASS	END=207010348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	207010349	.	A	.	.	PASS	END=207010385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	207013193	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	207013194	.	G	.	.	LowGQX	END=207013195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	207013196	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	207013197	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	207013198	.	T	.	.	LowGQX	END=207013200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr1	207013201	.	G	.	.	PASS	END=207013212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	207013213	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	207013214	.	T	.	.	PASS	END=207013215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	207013216	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	207013217	.	C	.	.	PASS	END=207013221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	207013222	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:2:60
chr1	207013223	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	207013224	.	C	.	.	PASS	END=207013242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	207013243	.	G	.	.	PASS	END=207013272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	207013273	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	207013274	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr1	207013275	.	C	.	.	PASS	END=207013298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	207013299	.	C	.	.	PASS	END=207013329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:33:60
chr1	207013330	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:13:60
chr1	207013331	.	A	.	.	PASS	END=207013338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr1	207013339	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:1:60
chr1	207013340	.	G	.	.	PASS	END=207013346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	207013347	.	T	.	.	PASS	END=207013348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	207013349	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	207013350	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:60
chr1	207013351	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	207013352	.	G	.	.	PASS	END=207013360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	207013361	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	207013362	.	C	.	.	PASS	END=207013363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	207013364	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	207013365	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	207013366	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	207013367	.	T	.	.	PASS	END=207013372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	207013373	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:0:60
chr1	207013374	.	A	.	.	PASS	END=207013375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	207013376	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	207013377	.	T	.	.	PASS	END=207013380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	207013381	.	C	.	.	LowGQX	END=207013409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	207013410	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	207013411	.	G	.	.	LowGQX	END=207013438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	207013439	.	T	.	.	LowGQX	END=207013447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	207013448	.	T	.	.	LowGQX	END=207013487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	207013488	.	G	.	.	LowGQX	END=207013518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207013519	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	207013520	.	A	.	.	LowGQX	END=207013550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207013551	.	T	.	.	LowGQX	END=207013570	GT	./.
chr1	207013571	.	C	.	.	LowGQX	END=207013576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207013577	.	G	.	.	LowGQX	.	GT	./.
chr1	207013578	.	G	.	.	LowGQX	END=207013600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207013601	.	T	.	.	LowGQX	.	GT	./.
chr1	207013602	.	T	.	.	LowGQX	END=207013608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207014337	.	A	.	.	PASS	END=207014436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	207015870	.	A	.	.	PASS	END=207015956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	207015957	.	T	C	2310.46	PASS	DP=90;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=5.7343;MQ=60;MQ0=0;QD=25.67;SB=-1555.67	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,90:90:99:2343,172,0:60:99:1.000
chr1	207015958	.	C	.	.	PASS	END=207015969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	207039196	.	A	.	.	LowGQX	END=207039224	GT	./.
chr1	207039225	.	C	.	.	LowGQX	END=207039228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207039229	.	T	.	.	LowGQX	.	GT	./.
chr1	207039230	.	C	.	.	LowGQX	END=207039231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207039232	.	C	.	.	LowGQX	.	GT	./.
chr1	207039233	.	T	.	.	LowGQX	END=207039236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207039237	.	G	.	.	LowGQX	END=207039238	GT	./.
chr1	207039239	.	G	.	.	LowGQX	END=207039240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207039241	.	T	.	.	LowGQX	END=207039242	GT	./.
chr1	207039243	.	T	.	.	LowGQX	END=207039277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207039278	.	A	.	.	LowGQX	.	GT	./.
chr1	207039279	.	C	.	.	LowGQX	END=207039295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207039296	.	T	.	.	LowGQX	.	GT	./.
chr1	207039297	.	G	.	.	LowGQX	END=207039323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207039324	.	C	.	.	LowGQX	.	GT	./.
chr1	207039325	.	G	.	.	LowGQX	END=207039327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207039328	.	A	.	.	LowGQX	.	GT	./.
chr1	207039329	.	T	.	.	LowGQX	END=207039342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207039343	.	T	.	.	LowGQX	.	GT	./.
chr1	207039344	.	A	.	.	LowGQX	END=207039358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207039627	.	T	.	.	LowGQX	END=207039726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207039827	.	A	.	.	LowGQX	END=207039983	GT	./.
chr1	207040717	.	G	.	.	LowGQX	END=207040816	GT	./.
chr1	207041821	.	G	.	.	LowGQX	END=207041920	GT	./.
chr1	207071150	.	A	.	.	LowGQX	END=207071249	GT	./.
chr1	207072661	.	G	.	.	LowGQX	END=207072862	GT	./.
chr1	207073622	.	T	.	.	LowGQX	END=207073721	GT	./.
chr1	207074837	.	A	.	.	LowGQX	END=207074999	GT	./.
chr1	207075331	.	C	.	.	LowGQX	END=207075430	GT	./.
chr1	207076313	.	C	.	.	LowGQX	END=207076412	GT	./.
chr1	207078362	.	T	.	.	LowGQX	END=207078494	GT	./.
chr1	207082727	.	A	.	.	LowGQX	END=207082758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	207082759	.	C	.	.	LowGQX	END=207082886	GT	./.
chr1	207083037	.	C	.	.	LowGQX	END=207083215	GT	./.
chr1	207083553	.	A	.	.	LowGQX	END=207083687	GT	./.
chr1	207085003	.	G	.	.	LowGQX	END=207085024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207085025	.	G	.	.	LowGQX	.	GT	./.
chr1	207085026	.	G	.	.	LowGQX	END=207085066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207085067	.	T	.	.	LowGQX	.	GT	./.
chr1	207085068	.	C	.	.	LowGQX	END=207085081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	207085082	.	T	.	.	LowGQX	.	GT	./.
chr1	207085083	.	G	.	.	LowGQX	END=207085122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207085123	.	T	.	.	LowGQX	.	GT	./.
chr1	207085124	.	T	.	.	LowGQX	END=207085142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207085143	.	T	.	.	LowGQX	.	GT	./.
chr1	207085144	.	G	.	.	LowGQX	END=207085163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207085164	.	G	.	.	LowGQX	.	GT	./.
chr1	207085165	.	G	.	.	LowGQX	END=207085177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207085178	.	T	.	.	LowGQX	END=207085362	GT	./.
chr1	207086272	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	207086273	.	C	.	.	LowGQX	.	GT	./.
chr1	207086274	.	C	.	.	LowGQX	END=207086283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	207086284	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	207086285	.	A	.	.	LowGQX	END=207086294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	207086295	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	207086296	.	A	.	.	LowGQX	END=207086298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	207086299	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	207086300	.	G	.	.	LowGQX	END=207086306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	207086307	.	C	.	.	LowGQX	.	GT	./.
chr1	207086308	.	A	.	.	LowGQX	END=207086319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	207086320	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	207086321	.	A	.	.	LowGQX	END=207086326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	207086327	.	G	.	.	LowGQX	.	GT	./.
chr1	207086328	.	G	.	.	LowGQX	END=207086333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	207086334	.	G	.	.	LowGQX	.	GT	./.
chr1	207086335	.	A	.	.	LowGQX	END=207086336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	207086337	.	A	.	.	LowGQX	.	GT	./.
chr1	207086338	.	C	.	.	LowGQX	END=207086371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	207086372	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	207086373	.	A	.	.	LowGQX	END=207086380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207086381	.	T	.	.	LowGQX	.	GT	./.
chr1	207086382	.	C	.	.	LowGQX	END=207086383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207086384	.	T	.	.	LowGQX	.	GT	./.
chr1	207086385	.	A	.	.	LowGQX	END=207086389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087102	.	A	.	.	LowGQX	END=207087156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087157	.	C	.	.	LowGQX	END=207087167	GT	./.
chr1	207087168	.	G	.	.	LowGQX	END=207087169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087170	.	C	.	.	LowGQX	.	GT	./.
chr1	207087171	.	A	.	.	LowGQX	END=207087185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087186	.	A	.	.	LowGQX	.	GT	./.
chr1	207087187	.	C	.	.	LowGQX	END=207087190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087191	.	C	.	.	LowGQX	.	GT	./.
chr1	207087192	.	T	.	.	LowGQX	END=207087198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087199	.	T	.	.	LowGQX	.	GT	./.
chr1	207087200	.	G	.	.	LowGQX	END=207087204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087205	.	A	.	.	LowGQX	.	GT	./.
chr1	207087206	.	C	.	.	LowGQX	END=207087208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087209	.	C	.	.	LowGQX	.	GT	./.
chr1	207087210	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087211	.	A	.	.	LowGQX	.	GT	./.
chr1	207087212	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087213	.	T	.	.	LowGQX	.	GT	./.
chr1	207087214	.	A	.	.	LowGQX	END=207087217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087218	.	A	.	.	LowGQX	END=207087219	GT	./.
chr1	207087220	.	A	.	.	LowGQX	END=207087221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087222	.	A	.	.	LowGQX	.	GT	./.
chr1	207087223	.	T	.	.	LowGQX	END=207087226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087227	.	T	.	.	LowGQX	.	GT	./.
chr1	207087228	.	G	.	.	LowGQX	END=207087231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087232	.	G	.	.	LowGQX	.	GT	./.
chr1	207087233	.	G	.	.	LowGQX	END=207087236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087237	.	T	.	.	LowGQX	.	GT	./.
chr1	207087238	.	T	.	.	LowGQX	END=207087239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087240	.	C	.	.	LowGQX	.	GT	./.
chr1	207087241	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087242	.	T	.	.	LowGQX	.	GT	./.
chr1	207087243	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087244	.	A	.	.	LowGQX	.	GT	./.
chr1	207087245	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087246	.	A	.	.	LowGQX	.	GT	./.
chr1	207087247	.	G	.	.	LowGQX	END=207087248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087249	.	A	.	.	LowGQX	.	GT	./.
chr1	207087250	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087251	.	C	.	.	LowGQX	.	GT	./.
chr1	207087252	.	T	.	.	LowGQX	END=207087259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087260	.	T	.	.	LowGQX	.	GT	./.
chr1	207087261	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087262	.	T	.	.	LowGQX	END=207087263	GT	./.
chr1	207087264	.	T	.	.	LowGQX	END=207087269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087270	.	C	.	.	LowGQX	.	GT	./.
chr1	207087271	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087272	.	T	.	.	LowGQX	.	GT	./.
chr1	207087273	.	G	.	.	LowGQX	END=207087277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087278	.	A	.	.	LowGQX	.	GT	./.
chr1	207087279	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087280	.	T	.	.	LowGQX	.	GT	./.
chr1	207087281	.	T	.	.	LowGQX	END=207087287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087288	.	G	.	.	LowGQX	END=207087295	GT	./.
chr1	207087296	.	C	.	.	LowGQX	END=207087298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087299	.	T	.	.	LowGQX	END=207087301	GT	./.
chr1	207087302	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087303	.	A	.	.	LowGQX	.	GT	./.
chr1	207087304	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087305	.	A	.	.	LowGQX	END=207087306	GT	./.
chr1	207087307	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087308	.	T	.	.	LowGQX	.	GT	./.
chr1	207087309	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087310	.	C	.	.	LowGQX	END=207087312	GT	./.
chr1	207087313	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087314	.	A	.	.	LowGQX	END=207087315	GT	./.
chr1	207087316	.	C	.	.	LowGQX	END=207087317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207087318	.	A	.	.	LowGQX	END=207087441	GT	./.
chr1	207091113	.	A	.	.	LowGQX	END=207091212	GT	./.
chr1	207094683	.	C	.	.	LowGQX	END=207094782	GT	./.
chr1	207095132	.	G	.	.	LowGQX	END=207095204	GT	./.
chr1	207095205	.	C	.	.	LowGQX	END=207095210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207095211	.	G	.	.	LowGQX	.	GT	./.
chr1	207095212	.	A	.	.	LowGQX	END=207095220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207095221	.	T	.	.	LowGQX	END=207095222	GT	./.
chr1	207095223	.	C	.	.	LowGQX	END=207095231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207103661	.	G	.	.	PASS	END=207103711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	207103712	.	T	.	.	PASS	END=207103755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	207103756	.	T	.	.	PASS	END=207103760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	207104822	.	G	.	.	PASS	END=207104870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	207104871	.	C	.	.	PASS	END=207104921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	207105014	.	A	.	.	PASS	END=207105044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	207105045	.	G	.	.	PASS	END=207105142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	207105143	.	T	.	.	PASS	END=207105149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	207105799	.	A	.	.	PASS	END=207105847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:91:60
chr1	207105848	.	C	.	.	PASS	END=207105891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	207105892	.	C	.	.	PASS	END=207105913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	207105914	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:72:60
chr1	207105915	.	C	.	.	PASS	END=207105924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	207106329	.	A	.	.	PASS	END=207106351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	207106352	.	C	.	.	PASS	END=207106377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	207106378	.	A	.	.	PASS	END=207106496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:60
chr1	207106497	.	T	.	.	PASS	END=207106513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	207107763	.	A	.	.	PASS	END=207107796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	207107797	.	A	.	.	PASS	END=207107827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	207107828	.	G	.	.	PASS	END=207107873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	207107874	.	G	.	.	PASS	END=207107957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	207107958	.	C	.	.	PASS	END=207107994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	207107995	.	T	.	.	PASS	END=207108074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	207108075	.	C	.	.	PASS	END=207108093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	207108829	.	A	.	.	PASS	END=207108847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	207108848	.	T	.	.	PASS	END=207108889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	207108890	.	C	.	.	PASS	END=207108937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	207108938	.	A	.	.	PASS	END=207109079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	207109080	.	C	.	.	PASS	END=207109107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	207109108	.	C	.	.	PASS	END=207109115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	207109116	.	C	T	4363.00	PASS	BaseQRankSum=1.301;DP=154;Dels=0.00;FS=3.446;HRun=1;HaplotypeScore=13.3096;MQ=60;MQ0=0;MQRankSum=-0.423;QD=28.33;ReadPosRankSum=0.774;SB=-1267.82	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,152:154:99:4363,298,0:60:99:0.987
chr1	207109117	.	T	.	.	PASS	END=207109137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	207109138	.	A	.	.	PASS	END=207109159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	207109160	.	G	.	.	PASS	END=207109165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	207110438	.	A	.	.	PASS	END=207110632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	207110633	.	G	.	.	PASS	END=207110716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	207110717	.	G	.	.	PASS	END=207110776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	207110777	.	T	.	.	PASS	END=207110828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:249:99:60
chr1	207110829	.	A	.	.	PASS	END=207110885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:259:99:60
chr1	207110886	.	T	.	.	PASS	END=207110935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr1	207110936	.	T	C	7502.98	PASS	BaseQRankSum=-1.159;DP=244;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=21.0721;MQ=60;MQ0=0;MQRankSum=0.458;QD=30.75;ReadPosRankSum=-0.315;SB=-2732.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,241:244:99:7503,530,0:60:99:0.996
chr1	207110937	.	A	.	.	PASS	END=207111019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr1	207111020	.	C	.	.	PASS	END=207111071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	207111072	.	T	.	.	PASS	END=207111098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	207112462	.	A	.	.	PASS	END=207112486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	207112487	.	T	.	.	PASS	END=207112517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	207112518	.	G	.	.	PASS	END=207112804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	207112805	.	A	.	.	PASS	END=207112810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	207113806	.	T	.	.	PASS	END=207113889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	207113890	.	C	.	.	PASS	END=207113905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:94:60
chr1	207131860	.	C	.	.	LowGQX	END=207132082	GT	./.
chr1	207132252	.	T	.	.	LowGQX	END=207132351	GT	./.
chr1	207133022	.	A	.	.	LowGQX	END=207133115	GT	./.
chr1	207133116	.	G	.	.	LowGQX	END=207133144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133766	.	C	.	.	LowGQX	END=207133772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133773	.	A	.	.	LowGQX	.	GT	./.
chr1	207133774	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133775	.	G	.	.	LowGQX	.	GT	./.
chr1	207133776	.	G	.	.	LowGQX	END=207133779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133780	.	A	.	.	LowGQX	.	GT	./.
chr1	207133781	.	C	.	.	LowGQX	END=207133787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133788	.	C	.	.	LowGQX	.	GT	./.
chr1	207133789	.	C	.	.	LowGQX	END=207133796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133797	.	C	.	.	LowGQX	END=207133798	GT	./.
chr1	207133799	.	C	.	.	LowGQX	END=207133800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133801	.	A	.	.	LowGQX	.	GT	./.
chr1	207133802	.	G	.	.	LowGQX	END=207133806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133807	.	C	.	.	LowGQX	.	GT	./.
chr1	207133808	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133809	.	A	.	.	LowGQX	.	GT	./.
chr1	207133810	.	C	.	.	LowGQX	END=207133824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133825	.	T	.	.	LowGQX	.	GT	./.
chr1	207133826	.	C	.	.	LowGQX	END=207133827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133828	.	G	.	.	LowGQX	.	GT	./.
chr1	207133829	.	T	.	.	LowGQX	END=207133831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133832	.	T	.	.	LowGQX	.	GT	./.
chr1	207133833	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133834	.	C	.	.	LowGQX	.	GT	./.
chr1	207133835	.	T	.	.	LowGQX	END=207133842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133843	.	C	.	.	LowGQX	END=207133846	GT	./.
chr1	207133847	.	G	.	.	LowGQX	END=207133848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133849	.	C	.	.	LowGQX	.	GT	./.
chr1	207133850	.	T	.	.	LowGQX	END=207133853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133854	.	G	.	.	LowGQX	END=207133855	GT	./.
chr1	207133856	.	G	.	.	LowGQX	END=207133864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133865	.	T	.	.	LowGQX	.	GT	./.
chr1	207133866	.	A	.	.	LowGQX	END=207133868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133869	.	T	.	.	LowGQX	.	GT	./.
chr1	207133870	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133871	.	C	.	.	LowGQX	.	GT	./.
chr1	207133872	.	C	.	.	LowGQX	END=207133874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133875	.	G	.	.	LowGQX	.	GT	./.
chr1	207133876	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133877	.	A	.	.	LowGQX	.	GT	./.
chr1	207133878	.	G	.	.	LowGQX	END=207133882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133883	.	T	.	.	LowGQX	.	GT	./.
chr1	207133884	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133885	.	C	.	.	LowGQX	.	GT	./.
chr1	207133886	.	T	.	.	LowGQX	END=207133888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133889	.	C	.	.	LowGQX	END=207133890	GT	./.
chr1	207133891	.	C	.	.	LowGQX	END=207133902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133903	.	C	.	.	LowGQX	END=207133905	GT	./.
chr1	207133906	.	T	.	.	LowGQX	END=207133907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207133908	.	C	.	.	LowGQX	END=207134041	GT	./.
chr1	207134042	.	T	.	.	LowGQX	END=207134043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134044	.	G	.	.	LowGQX	.	GT	./.
chr1	207134045	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134046	.	G	.	.	LowGQX	.	GT	./.
chr1	207134047	.	G	.	.	LowGQX	END=207134052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134053	.	T	.	.	LowGQX	END=207134054	GT	./.
chr1	207134055	.	T	.	.	LowGQX	END=207134057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134058	.	C	.	.	LowGQX	.	GT	./.
chr1	207134059	.	A	.	.	LowGQX	END=207134065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134066	.	A	.	.	LowGQX	.	GT	./.
chr1	207134067	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134068	.	T	.	.	LowGQX	.	GT	./.
chr1	207134069	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134070	.	T	.	.	LowGQX	.	GT	./.
chr1	207134071	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134072	.	T	.	.	LowGQX	.	GT	./.
chr1	207134073	.	G	.	.	LowGQX	END=207134074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134075	.	G	.	.	LowGQX	END=207134077	GT	./.
chr1	207134078	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134079	.	A	.	.	LowGQX	.	GT	./.
chr1	207134080	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134081	.	A	.	.	LowGQX	.	GT	./.
chr1	207134082	.	G	.	.	LowGQX	END=207134090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134091	.	C	.	.	LowGQX	END=207134092	GT	./.
chr1	207134093	.	A	.	.	LowGQX	END=207134095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134096	.	G	.	.	LowGQX	.	GT	./.
chr1	207134097	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134098	.	T	.	.	LowGQX	.	GT	./.
chr1	207134099	.	T	.	.	LowGQX	END=207134101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134102	.	T	.	.	LowGQX	.	GT	./.
chr1	207134103	.	A	.	.	LowGQX	END=207134104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134105	.	G	.	.	LowGQX	.	GT	./.
chr1	207134106	.	A	.	.	LowGQX	END=207134110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134111	.	T	.	.	LowGQX	END=207134112	GT	./.
chr1	207134113	.	T	.	.	LowGQX	END=207134116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134117	.	T	.	.	LowGQX	END=207134118	GT	./.
chr1	207134119	.	C	.	.	LowGQX	END=207134128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134129	.	T	.	.	LowGQX	END=207134130	GT	./.
chr1	207134131	.	T	.	.	LowGQX	END=207134136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134137	.	C	.	.	LowGQX	.	GT	./.
chr1	207134138	.	C	.	.	LowGQX	END=207134141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134142	.	T	.	.	LowGQX	.	GT	./.
chr1	207134143	.	C	.	.	LowGQX	END=207134146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134147	.	G	.	.	LowGQX	.	GT	./.
chr1	207134148	.	T	.	.	LowGQX	END=207134155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134156	.	T	.	.	LowGQX	END=207134157	GT	./.
chr1	207134158	.	G	.	.	LowGQX	END=207134163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134164	.	C	.	.	LowGQX	.	GT	./.
chr1	207134165	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134166	.	G	.	.	LowGQX	.	GT	./.
chr1	207134167	.	C	.	.	LowGQX	END=207134169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134170	.	T	.	.	LowGQX	.	GT	./.
chr1	207134171	.	G	.	.	LowGQX	END=207134174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134175	.	G	.	.	LowGQX	.	GT	./.
chr1	207134176	.	T	.	.	LowGQX	END=207134178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134179	.	T	.	.	LowGQX	.	GT	./.
chr1	207134180	.	C	.	.	LowGQX	END=207134181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134182	.	T	.	.	LowGQX	END=207134183	GT	./.
chr1	207134184	.	T	.	.	LowGQX	END=207134186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207134187	.	C	.	.	LowGQX	END=207134560	GT	./.
chr1	207134561	.	G	.	.	LowGQX	END=207134568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207135556	.	A	.	.	LowGQX	END=207135695	GT	./.
chr1	207135696	.	G	.	.	LowGQX	END=207135743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207135744	.	C	.	.	LowGQX	END=207135805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	207135806	.	T	.	.	LowGQX	END=207135828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	207135829	.	G	T	6.77	LowGQX;LowQD	BaseQRankSum=1.589;DP=8;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.572;QD=0.85;ReadPosRankSum=0.000;SB=-30.29	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:6,2:8:35.74:36,0,80:60:7:0.250
chr1	207135830	.	C	.	.	LowGQX	END=207135894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	207135895	.	A	.	.	LowGQX	END=207135898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	207139012	.	G	.	.	LowGQX	END=207139327	GT	./.
chr1	207140378	.	G	.	.	LowGQX	END=207140477	GT	./.
chr1	207140913	.	T	.	.	LowGQX	END=207140914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	207140915	.	T	.	.	LowGQX	END=207140955	GT	./.
chr1	207140956	.	A	.	.	LowGQX	END=207141012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207142593	.	C	.	.	LowGQX	END=207142703	GT	./.
chr1	207143402	.	C	.	.	LowGQX	END=207143405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207143406	.	A	.	.	LowGQX	.	GT	./.
chr1	207143407	.	C	.	.	LowGQX	END=207143417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207143418	.	A	.	.	LowGQX	.	GT	./.
chr1	207143419	.	A	.	.	LowGQX	END=207143421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207143422	.	A	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	207143423	.	T	.	.	LowGQX	END=207143439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207143440	.	C	.	.	LowGQX	.	GT	./.
chr1	207143441	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207143442	.	C	.	.	LowGQX	.	GT	./.
chr1	207143443	.	C	.	.	LowGQX	END=207143446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207143447	.	C	.	.	LowGQX	.	GT	./.
chr1	207143448	.	T	.	.	LowGQX	END=207143456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207143457	.	G	.	.	LowGQX	END=207143458	GT	./.
chr1	207143459	.	C	.	.	LowGQX	END=207143462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207143463	.	C	.	.	LowGQX	.	GT	./.
chr1	207143464	.	C	.	.	LowGQX	END=207143472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207143473	.	C	.	.	LowGQX	END=207143501	GT	./.
chr1	207195301	.	G	.	.	LowGQX	END=207196827	GT	./.
chr1	207198230	.	A	.	.	LowGQX	END=207198411	GT	./.
chr1	207200837	.	A	.	.	LowGQX	END=207200840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207200841	.	A	.	.	LowGQX	END=207200842	GT	./.
chr1	207200843	.	C	.	.	LowGQX	END=207200849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207200850	.	G	.	.	LowGQX	.	GT	./.
chr1	207200851	.	G	.	.	LowGQX	END=207200852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207200853	.	T	.	.	LowGQX	.	GT	./.
chr1	207200854	.	G	.	.	LowGQX	END=207200858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207200859	.	T	.	.	LowGQX	.	GT	./.
chr1	207200860	.	G	.	.	LowGQX	END=207200862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207200863	.	G	.	.	LowGQX	.	GT	./.
chr1	207200864	.	C	.	.	LowGQX	END=207200873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207200874	.	T	.	.	LowGQX	.	GT	./.
chr1	207200875	.	G	.	.	LowGQX	END=207200879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207200880	.	A	.	.	LowGQX	.	GT	./.
chr1	207200881	.	G	.	.	LowGQX	END=207200891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207200892	.	G	.	.	LowGQX	END=207200894	GT	./.
chr1	207200895	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207200896	.	C	.	.	LowGQX	.	GT	./.
chr1	207200897	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207200898	.	C	.	.	LowGQX	END=207200899	GT	./.
chr1	207200900	.	G	.	.	LowGQX	END=207200901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207200902	.	T	.	.	LowGQX	END=207200945	GT	./.
chr1	207222363	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207222364	.	G	.	.	LowGQX	.	GT	./.
chr1	207222365	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207222366	.	C	.	.	LowGQX	.	GT	./.
chr1	207222367	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207222368	.	C	.	.	LowGQX	.	GT	./.
chr1	207222369	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207222370	.	C	.	.	LowGQX	.	GT	./.
chr1	207222371	.	T	.	.	LowGQX	END=207222372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207222373	.	C	.	.	LowGQX	.	GT	./.
chr1	207222374	.	T	.	.	LowGQX	END=207222379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207222380	.	G	.	.	LowGQX	.	GT	./.
chr1	207222381	.	T	.	.	LowGQX	END=207222382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207222383	.	G	.	.	LowGQX	.	GT	./.
chr1	207222384	.	G	.	.	LowGQX	END=207222387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207222388	.	G	.	.	LowGQX	.	GT	./.
chr1	207222389	.	G	.	.	LowGQX	END=207222393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207222394	.	T	.	.	LowGQX	.	GT	./.
chr1	207222395	.	C	.	.	LowGQX	END=207222401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207222402	.	G	.	.	LowGQX	.	GT	./.
chr1	207222403	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207222404	.	A	.	.	LowGQX	END=207223070	GT	./.
chr1	207224021	.	C	.	.	LowGQX	END=207224380	GT	./.
chr1	207225505	.	T	.	.	LowGQX	END=207225509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207225510	.	T	.	.	LowGQX	.	GT	./.
chr1	207225511	.	T	.	.	LowGQX	END=207225521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207225522	.	A	.	.	LowGQX	.	GT	./.
chr1	207225523	.	A	.	.	LowGQX	END=207225527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207225528	.	A	.	.	LowGQX	.	GT	./.
chr1	207225529	.	C	.	.	LowGQX	END=207225543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207225544	.	A	.	.	LowGQX	.	GT	./.
chr1	207225545	.	C	.	.	LowGQX	END=207225561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207225562	.	T	.	.	LowGQX	.	GT	./.
chr1	207225563	.	T	.	.	LowGQX	END=207225565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207225566	.	A	.	.	LowGQX	.	GT	./.
chr1	207225567	.	T	.	.	LowGQX	END=207225573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207225574	.	T	.	.	LowGQX	.	GT	./.
chr1	207225575	.	T	.	.	LowGQX	END=207225585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207225586	.	C	.	.	LowGQX	.	GT	./.
chr1	207225587	.	A	.	.	LowGQX	END=207225591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207225592	.	T	.	.	LowGQX	.	GT	./.
chr1	207225593	.	T	.	.	LowGQX	END=207225596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207225597	.	T	.	.	LowGQX	.	GT	./.
chr1	207225598	.	G	.	.	LowGQX	END=207225602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207225603	.	A	.	.	LowGQX	.	GT	./.
chr1	207225604	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207228056	.	A	.	.	LowGQX	END=207228097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207228098	.	C	.	.	LowGQX	END=207228155	GT	./.
chr1	207235296	.	A	.	.	LowGQX	END=207235425	GT	./.
chr1	207235963	.	A	.	.	LowGQX	END=207236063	GT	./.
chr1	207236472	.	T	.	.	LowGQX	END=207236571	GT	./.
chr1	207236680	.	C	.	.	LowGQX	END=207236779	GT	./.
chr1	207237097	.	C	.	.	LowGQX	END=207237196	GT	./.
chr1	207238379	.	A	.	.	LowGQX	END=207238507	GT	./.
chr1	207240842	.	A	.	.	LowGQX	END=207241053	GT	./.
chr1	207241506	.	A	.	.	LowGQX	END=207241656	GT	./.
chr1	207242767	.	A	.	.	LowGQX	END=207242875	GT	./.
chr1	207243583	.	T	.	.	LowGQX	END=207243756	GT	./.
chr1	207244515	.	T	.	.	LowGQX	END=207244614	GT	./.
chr1	207244837	.	T	.	.	LowGQX	END=207244936	GT	./.
chr1	207245547	.	A	.	.	LowGQX	END=207245580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207245581	.	G	.	.	LowGQX	END=207245718	GT	./.
chr1	207252282	.	T	.	.	LowGQX	END=207252298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	207252299	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	207252300	.	C	.	.	LowGQX	END=207252338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207252339	.	C	.	.	LowGQX	.	GT	./.
chr1	207252340	.	A	.	.	LowGQX	END=207252344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207252345	.	C	.	.	LowGQX	.	GT	./.
chr1	207252346	.	C	.	.	LowGQX	END=207252356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207252357	.	C	.	.	LowGQX	.	GT	./.
chr1	207252358	.	T	.	.	LowGQX	END=207252370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207252371	.	G	.	.	LowGQX	.	GT	./.
chr1	207252372	.	G	.	.	LowGQX	END=207252381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207262856	.	G	.	.	LowGQX	END=207262955	GT	./.
chr1	207263651	.	A	.	.	LowGQX	.	GT	./.
chr1	207263652	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207263653	.	C	.	.	LowGQX	.	GT	./.
chr1	207263654	.	A	.	.	LowGQX	END=207263809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207263810	.	C	.	.	LowGQX	END=207263828	GT	./.
chr1	207264987	.	A	.	.	LowGQX	END=207264997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207264998	.	G	.	.	LowGQX	END=207264999	GT	./.
chr1	207265000	.	C	.	.	LowGQX	END=207265003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265004	.	A	.	.	LowGQX	.	GT	./.
chr1	207265005	.	T	.	.	LowGQX	END=207265006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265007	.	C	.	.	LowGQX	END=207265008	GT	./.
chr1	207265009	.	G	.	.	LowGQX	END=207265018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265019	.	A	.	.	LowGQX	.	GT	./.
chr1	207265020	.	T	.	.	LowGQX	END=207265021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265022	.	G	.	.	LowGQX	.	GT	./.
chr1	207265023	.	A	.	.	LowGQX	END=207265024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265025	.	A	.	.	LowGQX	END=207265027	GT	./.
chr1	207265028	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265029	.	C	.	.	LowGQX	.	GT	./.
chr1	207265030	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265031	.	G	.	.	LowGQX	END=207265032	GT	./.
chr1	207265033	.	T	.	.	LowGQX	END=207265035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265036	.	T	.	.	LowGQX	END=207265040	GT	./.
chr1	207265041	.	G	.	.	LowGQX	END=207265058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265059	.	C	.	.	LowGQX	.	GT	./.
chr1	207265060	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	207265061	.	A	.	.	LowGQX	.	GT	./.
chr1	207265062	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	207265063	.	A	.	.	LowGQX	.	GT	./.
chr1	207265064	.	T	.	.	LowGQX	END=207265081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265082	.	A	.	.	LowGQX	.	GT	./.
chr1	207265083	.	C	.	.	LowGQX	END=207265084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265085	.	A	.	.	LowGQX	.	GT	./.
chr1	207265086	.	C	.	.	LowGQX	END=207265087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265088	.	A	.	.	LowGQX	.	GT	./.
chr1	207265089	.	C	.	.	LowGQX	END=207265096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265097	.	A	.	.	LowGQX	.	GT	./.
chr1	207265098	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265099	.	G	.	.	LowGQX	.	GT	./.
chr1	207265100	.	G	.	.	LowGQX	END=207265103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265104	.	C	.	.	LowGQX	.	GT	./.
chr1	207265105	.	A	.	.	LowGQX	END=207265108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265109	.	G	.	.	LowGQX	.	GT	./.
chr1	207265110	.	G	.	.	LowGQX	END=207265114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265115	.	A	.	.	LowGQX	.	GT	./.
chr1	207265116	.	G	.	.	LowGQX	END=207265117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265118	.	G	.	.	LowGQX	END=207265119	GT	./.
chr1	207265120	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265121	.	T	.	.	LowGQX	.	GT	./.
chr1	207265122	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265123	.	G	.	.	LowGQX	.	GT	./.
chr1	207265124	.	A	.	.	LowGQX	END=207265126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265127	.	A	.	.	LowGQX	END=207265128	GT	./.
chr1	207265129	.	C	.	.	LowGQX	END=207265130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265131	.	C	.	.	LowGQX	.	GT	./.
chr1	207265132	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265133	.	C	.	.	LowGQX	.	GT	./.
chr1	207265134	.	C	.	.	LowGQX	END=207265135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265136	.	G	.	.	LowGQX	.	GT	./.
chr1	207265137	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265138	.	G	.	.	LowGQX	.	GT	./.
chr1	207265139	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265140	.	A	.	.	LowGQX	.	GT	./.
chr1	207265141	.	C	.	.	LowGQX	END=207265150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265151	.	C	.	.	LowGQX	.	GT	./.
chr1	207265152	.	C	.	.	LowGQX	END=207265155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265156	.	T	.	.	LowGQX	.	GT	./.
chr1	207265157	.	G	.	.	LowGQX	END=207265165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207265166	.	G	.	.	LowGQX	.	GT	./.
chr1	207265167	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207268624	.	T	.	.	LowGQX	END=207268913	GT	./.
chr1	207269804	.	G	.	.	LowGQX	END=207269963	GT	./.
chr1	207271493	.	A	.	.	LowGQX	END=207271611	GT	./.
chr1	207273132	.	A	.	.	LowGQX	END=207273276	GT	./.
chr1	207286369	.	C	.	.	PASS	END=207286518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	207286519	.	A	.	.	PASS	END=207286548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	207287443	.	A	.	.	PASS	END=207287468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	207287469	.	T	.	.	PASS	END=207287537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	207287538	.	A	.	.	PASS	END=207287616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	207287617	.	C	.	.	PASS	END=207287622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	207287623	.	C	.	.	PASS	END=207287635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	207287636	.	T	.	.	PASS	END=207287652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	207287984	.	G	.	.	LowGQX	END=207287990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	207287991	.	A	.	.	LowGQX	END=207287994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	207287995	.	C	.	.	LowGQX	END=207287998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	207287999	.	T	.	.	LowGQX	END=207288026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	207288027	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	207288028	.	A	.	.	LowGQX	END=207288030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207288031	.	G	.	.	LowGQX	.	GT	./.
chr1	207288032	.	T	.	.	LowGQX	END=207288034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207288035	.	C	.	.	LowGQX	END=207288039	GT	./.
chr1	207288040	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207288041	.	A	.	.	LowGQX	.	GT	./.
chr1	207288042	.	T	.	.	LowGQX	END=207288043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207288044	.	G	.	.	LowGQX	END=207288046	GT	./.
chr1	207288047	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207288048	.	A	.	.	LowGQX	END=207288083	GT	./.
chr1	207288709	.	C	.	.	LowGQX	END=207288720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207288721	.	T	.	.	LowGQX	END=207288862	GT	./.
chr1	207297260	.	T	.	.	PASS	END=207297303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	207297304	.	G	.	.	PASS	END=207297359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	207297518	.	A	.	.	PASS	END=207297559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	207297560	.	G	.	.	PASS	END=207297638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	207297639	.	C	.	.	PASS	END=207297677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	207297678	.	G	.	.	PASS	END=207297679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	207297680	.	T	C	1784.29	PASS	BaseQRankSum=1.613;DP=123;Dels=0.00;FS=2.399;HRun=0;HaplotypeScore=12.3524;MQ=60;MQ0=0;MQRankSum=-0.380;QD=14.51;ReadPosRankSum=0.206;SB=-984.22	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:54,69:123:99:1814,0,1432:60:99:0.561
chr1	207297681	.	G	.	.	PASS	END=207297704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	207297705	.	T	.	.	PASS	END=207297713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	207300056	.	A	.	.	PASS	END=207300080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	207300081	.	G	.	.	PASS	END=207300091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	207300092	.	G	.	.	PASS	END=207300097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	207300098	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:1:60
chr1	207300099	.	G	.	.	PASS	END=207300120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	207300121	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:3:60
chr1	207300122	.	T	.	.	PASS	END=207300144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	207300145	.	T	.	.	PASS	END=207300153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	207300154	.	A	.	.	PASS	END=207300161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	207300162	.	T	.	.	PASS	END=207300163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	207300164	.	T	.	.	PASS	END=207300202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	207300203	.	T	.	.	PASS	END=207300219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	207300220	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:6:60
chr1	207300221	.	T	.	.	PASS	END=207300225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	207300226	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:3:60
chr1	207300227	.	T	.	.	PASS	END=207300232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	207300233	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	207300234	.	G	.	.	PASS	END=207300242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	207304889	.	A	.	.	PASS	END=207304893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:39:60
chr1	207304894	.	G	.	.	PASS	END=207304923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	207304924	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:0:60
chr1	207304925	.	T	.	.	PASS	END=207304971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	207304972	.	T	.	.	PASS	END=207304990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	207304991	.	C	.	.	PASS	END=207305010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	207305011	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	207305012	.	A	.	.	PASS	END=207305027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	207305028	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	207305029	.	C	.	.	PASS	END=207305035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	207305036	.	T	.	.	LowGQX	END=207305040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	207305041	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	207305042	.	T	.	.	LowGQX	END=207305044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	207305045	.	T	.	.	LowGQX	END=207305060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	207305061	.	T	.	.	LowGQX	END=207305072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	207305073	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	207305074	.	A	.	.	LowGQX	END=207305078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	207305079	.	T	.	.	LowGQX	END=207305082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	207305083	.	A	.	.	LowGQX	END=207305086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	207305087	.	T	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	207307747	.	A	.	.	PASS	END=207307771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	207307772	.	C	.	.	PASS	END=207307902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	207307903	.	C	.	.	PASS	END=207307930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	207307931	.	G	.	.	PASS	END=207307939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	207314449	.	A	.	.	PASS	END=207314497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	207314498	.	A	.	.	PASS	END=207314593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	207314594	.	T	.	.	PASS	END=207314623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	207317150	.	G	.	.	PASS	END=207317180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	207317181	.	A	.	.	PASS	END=207317307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr1	207317308	.	C	.	.	PASS	END=207317331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	207317332	.	T	.	.	PASS	END=207317340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	207317887	.	A	.	.	PASS	END=207318026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	207318027	.	A	.	.	PASS	END=207318042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	207318043	.	C	.	.	PASS	END=207318064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	207495051	.	G	.	.	PASS	END=207495101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	207495102	.	C	.	.	PASS	END=207495122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	207495123	.	C	.	.	PASS	END=207495141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:60
chr1	207495142	.	C	.	.	PASS	END=207495176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	207495177	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:60
chr1	207495178	.	T	.	.	PASS	END=207495183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	207495184	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:72:60
chr1	207495185	.	G	.	.	PASS	END=207495206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	207495207	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr1	207495208	.	G	.	.	PASS	END=207495211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	207495212	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:60
chr1	207495558	.	T	.	.	PASS	END=207495559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	207495560	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	207495561	.	C	.	.	PASS	END=207495565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	207495566	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:39:60
chr1	207495567	.	C	.	.	PASS	END=207495579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	207495580	.	G	.	.	PASS	END=207495581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	207495582	.	G	.	.	PASS	END=207495609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	207495610	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:75:60
chr1	207495611	.	A	.	.	PASS	END=207495654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	207495655	.	T	.	.	PASS	END=207495657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	207495725	.	A	.	.	PASS	END=207495741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	207495742	.	C	.	.	PASS	END=207495767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	207495768	.	G	.	.	PASS	END=207495877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr1	207495878	.	C	.	.	PASS	END=207495900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	207495901	.	A	.	.	PASS	END=207495914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	207497902	.	A	.	.	PASS	END=207497949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	207497950	.	G	.	.	PASS	END=207498040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	207498041	.	A	.	.	PASS	END=207498097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	207498965	.	A	.	.	PASS	END=207499063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	207499064	.	A	.	.	PASS	END=207499068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	207500090	.	G	.	.	PASS	END=207500159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	207500160	.	T	.	.	PASS	END=207500183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	207500184	.	T	.	.	PASS	END=207500189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	207504451	.	A	.	.	PASS	END=207504472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	207504473	.	C	.	.	PASS	END=207504512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	207504513	.	A	.	.	PASS	END=207504619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	207504620	.	G	.	.	PASS	END=207504639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	207504640	.	A	.	.	PASS	END=207504650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	207510036	.	A	.	.	PASS	END=207510077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	207510078	.	A	.	.	PASS	END=207510121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	207510122	.	C	.	.	PASS	END=207510143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	207510144	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:99:60
chr1	207510145	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:74:60
chr1	207510146	.	C	.	.	PASS	END=207510165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	207510671	.	C	.	.	PASS	END=207510702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	207510703	.	A	.	.	PASS	END=207510765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	207510766	.	C	.	.	PASS	END=207510770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	207512703	.	A	.	.	PASS	END=207512747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	207512748	.	C	.	.	PASS	END=207512802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	207513735	.	G	.	.	PASS	END=207513764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:78:60
chr1	207513765	.	C	.	.	PASS	END=207513823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	207513824	.	C	.	.	PASS	END=207513856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	207513857	.	T	.	.	PASS	END=207513863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	207513864	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:63:60
chr1	207513865	.	G	.	.	PASS	END=207513887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	207513888	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:62:60
chr1	207513889	.	T	.	.	PASS	END=207513913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	207513914	.	C	.	.	PASS	END=207513929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	207513930	.	T	.	.	PASS	END=207513977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	207513978	.	T	.	.	PASS	END=207513989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	207520452	.	A	.	.	LowGQX	END=207520548	GT	./.
chr1	207520549	.	G	.	.	LowGQX	END=207520551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207520739	.	G	.	.	LowGQX	END=207520815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr1	207520816	.	A	.	.	LowGQX	END=207520906	GT	./.
chr1	207523380	.	G	.	.	LowGQX	END=207523428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207523429	.	T	.	.	LowGQX	.	GT	./.
chr1	207523430	.	C	.	.	LowGQX	END=207523441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207523442	.	C	.	.	LowGQX	.	GT	./.
chr1	207523443	.	T	.	.	LowGQX	END=207523451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207523452	.	T	.	.	LowGQX	.	GT	./.
chr1	207523453	.	G	.	.	LowGQX	END=207523454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207523455	.	G	.	.	LowGQX	.	GT	./.
chr1	207523456	.	A	.	.	LowGQX	END=207523459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207523460	.	T	.	.	LowGQX	.	GT	./.
chr1	207523461	.	C	.	.	LowGQX	END=207523473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207523474	.	T	.	.	LowGQX	.	GT	./.
chr1	207523475	.	G	.	.	LowGQX	END=207523539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207527339	.	T	.	.	LowGQX	END=207527438	GT	./.
chr1	207532843	.	A	.	.	PASS	END=207532846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	207532847	.	C	.	.	PASS	END=207532848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	207532849	.	T	.	.	PASS	END=207532852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	207532853	.	G	.	.	PASS	END=207532854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	207532855	.	T	.	.	PASS	END=207532857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:59
chr1	207532858	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:45:59
chr1	207532859	.	A	.	.	PASS	END=207532860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:59
chr1	207532861	.	C	T	195.86	SB	BaseQRankSum=0.051;DP=37;Dels=0.05;FS=69.262;HRun=20;HaplotypeScore=21.4576;MQ=59;MQ0=0;MQRankSum=-1.364;QD=5.29;ReadPosRankSum=-1.128;SB=-3.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:21,14:35:99:226,0,472:59:99:0.400
chr1	207532862	.	T	.	.	PASS	END=207532972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:78:60
chr1	207532973	.	A	.	.	PASS	END=207532995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr1	207532996	.	A	.	.	PASS	END=207533014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	207627653	.	G	.	.	PASS	END=207627681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	207627682	.	C	.	.	PASS	END=207627767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	207627768	.	G	.	.	PASS	END=207627793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:93:59
chr1	207627794	.	T	.	.	PASS	END=207627815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:59
chr1	207627816	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:60
chr1	207627817	.	C	.	.	PASS	END=207627818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	207627819	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:75:60
chr1	207627820	.	C	.	.	PASS	END=207627822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	207627823	.	T	.	.	PASS	END=207627827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	207627828	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:57:60
chr1	207627829	.	G	.	.	PASS	END=207627831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr1	207627832	.	A	.	.	PASS	END=207627834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	207627835	.	G	.	.	PASS	END=207627836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	207627837	.	G	.	.	PASS	END=207627840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	207627841	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:17:60
chr1	207627842	.	C	.	.	PASS	END=207627844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	207627845	.	A	.	.	PASS	END=207627847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	207627848	.	T	.	28.38	LowGQX	DP=17;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:13:17:2.28:60:2
chr1	207627849	.	G	.	.	PASS	END=207627852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	207627853	.	A	.	.	PASS	END=207627855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	207627856	.	C	.	.	PASS	END=207627857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	207627858	.	T	.	36	LowGQX	DP=11;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:11:6.01:60:6
chr1	207627859	.	C	.	.	PASS	END=207627865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	207627866	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	207627867	.	G	.	.	LowGQX	END=207627869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	207627870	.	A	.	.	LowGQX	END=207627872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	207639820	.	A	.	.	PASS	END=207639834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	207639835	.	T	.	.	PASS	END=207639853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	207639854	.	C	.	.	PASS	END=207639887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	207639888	.	C	.	.	PASS	END=207639921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	207639922	.	A	.	.	PASS	END=207639948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	207639949	.	T	.	.	PASS	END=207639956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	207639957	.	T	.	.	PASS	END=207639990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	207639991	.	A	.	.	PASS	END=207640099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	207640100	.	A	.	.	PASS	END=207640107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	207640108	.	G	.	.	PASS	END=207640131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	207640132	.	C	.	.	PASS	END=207640140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	207640141	.	A	.	.	PASS	END=207640154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	207640155	.	A	.	.	PASS	END=207640227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	207640228	.	G	.	.	PASS	END=207640246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	207640247	.	C	.	.	PASS	END=207640258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	207640259	.	T	.	.	PASS	END=207640277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	207640278	.	G	.	.	PASS	END=207640280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	207640281	.	T	.	.	PASS	END=207640282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:48:60
chr1	207640283	.	G	.	.	PASS	END=207640288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	207640289	.	T	.	.	PASS	END=207640294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	207640295	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:57:60
chr1	207640296	.	C	.	.	PASS	END=207640307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	207640308	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:57:60
chr1	207641821	.	T	.	.	PASS	END=207641843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	207641844	.	T	.	.	PASS	END=207641846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	207641847	.	T	.	.	PASS	END=207641859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	207641860	.	G	.	.	PASS	END=207641870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	207641871	.	G	.	.	PASS	END=207641877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:75:60
chr1	207641878	.	C	.	.	PASS	END=207641886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:96:60
chr1	207641887	.	G	.	.	PASS	END=207641896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	207641897	.	T	.	.	PASS	END=207641917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:90:60
chr1	207641918	.	T	.	.	PASS	END=207641957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	207641958	.	T	.	.	PASS	END=207642017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	207642018	.	T	.	.	PASS	END=207642151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	207642152	.	C	.	.	PASS	END=207642192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	207642193	.	A	.	.	PASS	END=207642245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	207642246	.	T	.	.	PASS	END=207642287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	207642288	.	T	.	.	PASS	END=207642295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	207642444	.	T	.	.	PASS	END=207642513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	207642514	.	C	.	.	PASS	END=207642537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	207642538	.	G	.	.	PASS	END=207642598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	207642599	.	T	.	.	PASS	END=207642628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	207642989	.	T	.	.	PASS	END=207643002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	207643003	.	C	.	.	PASS	END=207643018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	207643019	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:51:60
chr1	207643020	.	T	.	.	PASS	END=207643054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	207643055	.	C	.	.	PASS	END=207643060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	207643061	.	C	.	.	PASS	END=207643080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	207643081	.	C	.	.	PASS	END=207643124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	207643125	.	C	.	.	PASS	END=207643171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	207643172	.	T	.	.	PASS	END=207643192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	207643193	.	G	.	.	PASS	END=207643342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	207643343	.	C	.	.	PASS	END=207643404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	207643405	.	G	.	.	PASS	END=207643423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	207643424	.	C	.	.	PASS	END=207643437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	207643438	.	T	.	.	PASS	END=207643460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	207643461	.	T	.	.	PASS	END=207643473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	207643474	.	T	.	.	PASS	END=207643478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	207643479	.	C	.	.	PASS	END=207643498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	207644034	.	C	.	.	PASS	END=207644041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	207644042	.	G	.	.	PASS	END=207644046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:78:60
chr1	207644047	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:36:60
chr1	207644048	.	T	.	.	PASS	END=207644071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	207644072	.	T	.	.	PASS	END=207644077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	207644078	.	C	.	.	PASS	END=207644088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	207644089	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:54:27:60
chr1	207644090	.	C	.	.	PASS	END=207644091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	207644092	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:75:60
chr1	207644093	.	G	.	.	PASS	END=207644098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	207644099	.	C	.	.	PASS	END=207644159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	207644160	.	C	.	.	PASS	END=207644183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	207644184	.	G	.	.	PASS	END=207644216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	207644217	.	G	.	.	PASS	END=207644289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	207644290	.	T	.	.	PASS	END=207644380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	207644381	.	A	.	.	PASS	END=207644417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	207644418	.	T	.	.	PASS	END=207644454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	207644455	.	T	.	.	PASS	END=207644481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	207644482	.	A	.	.	PASS	END=207644483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	207644717	.	T	.	.	PASS	END=207644743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	207644744	.	T	.	.	PASS	END=207644761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	207644762	.	C	.	.	PASS	END=207644792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	207644793	.	C	.	.	PASS	END=207644892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	207644893	.	A	.	.	PASS	END=207644895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	207646066	.	T	.	.	PASS	END=207646070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	207646071	.	G	.	.	PASS	END=207646088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	207646089	.	A	.	.	PASS	END=207646110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	207646111	.	C	.	.	PASS	END=207646137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	207646138	.	C	.	.	PASS	END=207646144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	207646145	.	C	.	.	PASS	END=207646159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	207646160	.	C	.	.	PASS	END=207646162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	207646163	.	C	T	2011.75	PASS	BaseQRankSum=2.464;DP=123;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.6683;MQ=60;MQ0=0;MQRankSum=-0.415;QD=16.36;ReadPosRankSum=-0.670;SB=-253.46	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:54,69:123:99:2042,0,1473:60:99:0.561
chr1	207646164	.	G	.	.	PASS	END=207646191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	207646192	.	G	.	.	PASS	END=207646208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	207646209	.	A	.	.	PASS	END=207646235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr1	207646236	.	G	.	.	PASS	END=207646321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:269:99:60
chr1	207646322	.	G	A	4334.84	PASS	BaseQRankSum=3.042;DP=320;Dels=0.00;FS=1.391;HRun=0;HaplotypeScore=32.3857;MQ=60;MQ0=0;MQRankSum=-0.079;QD=13.55;ReadPosRankSum=1.993;SB=-2592.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:146,173:320:99:4335,0,3469:60:99:0.542
chr1	207646323	.	T	.	.	PASS	END=207646382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:250:99:60
chr1	207646383	.	A	.	.	PASS	END=207646417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	207646418	.	C	.	.	PASS	END=207646430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	207646431	.	A	.	.	PASS	END=207646459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	207646460	.	C	.	.	PASS	END=207646473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	207646474	.	G	.	.	PASS	END=207646498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	207646499	.	T	.	.	PASS	END=207646575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	207646839	.	G	.	.	PASS	END=207646903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	207646904	.	C	.	.	PASS	END=207646923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	207646924	.	T	.	.	PASS	END=207646963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	207646964	.	A	.	.	PASS	END=207647014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	207647015	.	A	.	.	PASS	END=207647092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	207647093	.	C	.	.	PASS	END=207647166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	207647167	.	A	.	.	PASS	END=207647210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	207647211	.	A	.	.	PASS	END=207647242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	207647243	.	T	.	.	PASS	END=207647252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	207647253	.	T	.	.	PASS	END=207647269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	207647270	.	C	.	.	PASS	END=207647281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	207647535	.	A	.	.	PASS	END=207647556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	207647557	.	G	.	.	PASS	END=207647575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	207647576	.	C	.	.	PASS	END=207647583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	207647584	.	A	.	.	PASS	END=207647599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	207647600	.	G	.	.	PASS	END=207647715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:81:60
chr1	207647716	.	G	.	.	PASS	END=207647719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	207648118	.	G	.	.	PASS	END=207648122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	207648123	.	C	.	.	PASS	END=207648132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:86:60
chr1	207648133	.	C	.	.	PASS	END=207648159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	207648160	.	C	.	.	PASS	END=207648168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	207648169	.	T	.	.	PASS	END=207648182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	207648183	.	C	.	.	PASS	END=207648204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	207648205	.	G	.	.	PASS	END=207648228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	207648229	.	A	.	.	PASS	END=207648333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	207648334	.	C	.	.	PASS	END=207648356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	207648357	.	T	.	.	PASS	END=207648403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	207648404	.	A	.	.	PASS	END=207648418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	207648419	.	C	.	.	PASS	END=207648432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr1	207648433	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:66:60
chr1	207648434	.	T	.	.	PASS	END=207648456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:87:60
chr1	207648457	.	T	.	.	PASS	END=207648468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	207648469	.	G	.	.	PASS	END=207648479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	207648480	.	T	.	.	PASS	END=207648496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	207648497	.	T	.	.	PASS	END=207648505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	207648506	.	T	.	.	PASS	END=207648517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	207648518	.	T	.	.	PASS	END=207648528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	207648529	.	G	.	.	LowGQX	END=207648532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	207648533	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	207648534	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	207648535	.	C	.	.	PASS	END=207648538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	207648539	.	T	.	.	LowGQX	END=207648560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	207648561	.	G	.	.	LowGQX	END=207648562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	207648563	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	207648564	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr1	207648565	.	A	.	.	LowGQX	END=207648584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	207648585	.	T	.	.	LowGQX	END=207648592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	207648593	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	207648594	.	G	.	.	LowGQX	END=207648600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	207648601	.	A	.	.	LowGQX	END=207648603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	207648604	.	A	.	.	LowGQX	END=207648609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	207648610	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	207648611	.	A	.	.	LowGQX	END=207648612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	207649528	.	C	.	.	PASS	END=207649538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	207649539	.	T	.	.	PASS	END=207649551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	207649552	.	A	.	.	PASS	END=207649580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	207649581	.	T	.	.	PASS	END=207649618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	207649619	.	G	.	.	PASS	END=207649688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	207649689	.	T	.	.	PASS	END=207649713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	207649714	.	T	.	.	PASS	END=207649731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	207649732	.	G	.	.	PASS	END=207649742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	207649743	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:57:60
chr1	207649744	.	A	.	.	PASS	END=207649762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	207649763	.	A	.	.	PASS	END=207649767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	207649768	.	C	.	.	PASS	END=207649774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	207649775	.	T	.	.	PASS	END=207649785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	207649786	.	C	.	.	PASS	END=207649800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	207649801	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:39:60
chr1	207649802	.	A	.	.	PASS	END=207649808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	207649809	.	C	.	.	PASS	END=207649815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	207651179	.	G	.	.	PASS	END=207651192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	207651193	.	A	.	.	PASS	END=207651257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	207651258	.	G	.	.	PASS	END=207651341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	207651342	.	G	.	.	PASS	END=207651363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:79:60
chr1	207651364	.	C	.	.	PASS	END=207651369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	207651370	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:43:60
chr1	207651371	.	A	.	.	PASS	END=207651390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	207651391	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:36:24:60
chr1	207651392	.	C	.	.	PASS	END=207651401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr1	207651402	.	G	.	.	PASS	END=207651410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:60
chr1	207651411	.	A	.	.	PASS	END=207651429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr1	207651430	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:21:60
chr1	207651431	.	T	.	.	PASS	END=207651447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	207651448	.	C	.	.	PASS	END=207651455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	207651456	.	C	.	.	PASS	END=207651458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	207651459	.	A	.	.	PASS	END=207651466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	207652544	.	T	.	.	PASS	END=207652551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	207652552	.	A	.	.	PASS	END=207652638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	207652639	.	A	.	.	PASS	END=207652676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	207653272	.	A	.	.	PASS	END=207653348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	207653349	.	A	.	.	PASS	END=207653394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	207653395	.	C	A	723.55	PASS	BaseQRankSum=0.852;DP=58;Dels=0.00;FS=7.901;HRun=1;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=-0.493;QD=12.47;ReadPosRankSum=1.212;SB=-447.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,32:58:99:754,0,607:60:99:0.552
chr1	207653396	.	A	.	.	PASS	END=207653440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	207653441	.	T	.	.	PASS	END=207653449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	207658758	.	A	.	.	PASS	END=207658797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	207658798	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:33:60
chr1	207658799	.	T	.	.	PASS	END=207658822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:78:60
chr1	207658823	.	A	.	.	PASS	END=207658859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	207658860	.	A	.	.	PASS	END=207658927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	207658928	.	A	.	.	PASS	END=207658950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	207669542	.	T	.	.	PASS	END=207669591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	207669592	.	T	.	.	PASS	END=207669666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	207669667	.	C	.	.	PASS	END=207669691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	207669692	.	T	.	.	PASS	END=207669714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	207669715	.	G	.	.	PASS	END=207669733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	207679248	.	G	.	.	PASS	END=207679293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	207679294	.	A	.	.	PASS	END=207679306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	207679307	.	A	G	1155.56	PASS	BaseQRankSum=0.830;DP=93;Dels=0.00;FS=0.806;HRun=0;HaplotypeScore=18.2542;MQ=60;MQ0=0;MQRankSum=-0.475;QD=12.43;ReadPosRankSum=-1.401;SB=-668.40	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,51:93:99:1186,0,1125:60:99:0.548
chr1	207679308	.	T	.	.	PASS	END=207679392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	207679393	.	A	.	.	PASS	END=207679424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	207679425	.	A	.	.	PASS	END=207679428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	207680008	.	A	.	.	PASS	END=207680056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	207680057	.	A	.	.	PASS	END=207680078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	207680079	.	C	.	.	PASS	END=207680108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	207680109	.	A	.	.	PASS	END=207680162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	207684907	.	C	.	.	PASS	END=207684966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:59
chr1	207684967	.	T	.	.	PASS	END=207685006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	207696955	.	G	.	.	PASS	END=207696959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:59
chr1	207696960	.	T	.	.	PASS	END=207696997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:51
chr1	207696998	.	T	.	.	PASS	END=207697005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:51
chr1	207697006	.	A	.	.	PASS	END=207697031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:49
chr1	207697032	.	A	.	.	PASS	END=207697056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:44
chr1	207697057	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:62:44
chr1	207697058	.	C	.	.	PASS	END=207697106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:38
chr1	207697107	.	A	.	.	PASS	END=207697118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:35
chr1	207697119	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:42:35
chr1	207697120	.	A	.	.	PASS	END=207697136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:35
chr1	207697137	.	C	.	.	PASS	END=207697148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:36
chr1	207697149	.	C	.	.	PASS	END=207697150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:57:36
chr1	207697151	.	C	.	.	PASS	END=207697205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:33
chr1	207697206	.	A	.	.	PASS	END=207697298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:31
chr1	207697299	.	T	.	.	PASS	END=207697354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:41
chr1	207700086	.	C	.	.	PASS	END=207700098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:40
chr1	207700099	.	A	.	.	PASS	END=207700135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:39
chr1	207700136	.	A	.	.	PASS	END=207700181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:35
chr1	207700182	.	A	.	.	PASS	END=207700224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:28
chr1	207700225	.	G	.	.	PASS	END=207700244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:22
chr1	207700245	.	A	.	.	PASS	END=207700253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:20
chr1	207700254	.	C	.	.	LowMQ	END=207700274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:16
chr1	207700314	.	G	.	.	LowMQ	END=207700347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:271:87:9
chr1	207700348	.	G	A	378.74	LowMQ;LowQD;SB	BaseQRankSum=0.512;DP=305;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.0117;MQ=10;MQ0=260;MQRankSum=-0.216;QD=1.24;ReadPosRankSum=0.535;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:232,73:305:99:409,0,543:10:99:0.239
chr1	207700349	.	T	.	.	LowMQ	END=207700402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:88:10
chr1	207700403	.	T	.	.	LowMQ	END=207700465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:11
chr1	207700466	.	A	.	.	LowMQ	END=207700468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:90:12
chr1	207701989	.	G	.	.	LowGQX;LowMQ	END=207702153	GT	./.
chr1	207705453	.	A	.	.	LowGQX;LowMQ	END=207705812	GT	./.
chr1	207706741	.	T	.	.	LowGQX;LowMQ	END=207706933	GT	./.
chr1	207707490	.	G	.	.	LowGQX;LowMQ	END=207707565	GT	./.
chr1	207707566	.	A	.	.	LowGQX;LowMQ	END=207707582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:3:2
chr1	207707583	.	G	.	.	LowGQX;LowMQ	END=207707617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:6:4
chr1	207707618	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:143:3:4
chr1	207707619	.	A	.	.	LowGQX;LowMQ	END=207707630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:6:4
chr1	207707631	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:139:3:4
chr1	207707632	.	G	.	.	LowGQX;LowMQ	END=207707636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:6:4
chr1	207707637	.	A	.	.	LowGQX;LowMQ	END=207707638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:3:4
chr1	207707639	.	A	.	.	LowGQX;LowMQ	END=207707641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:9:4
chr1	207713254	.	C	.	.	LowGQX;LowMQ	END=207713418	GT	./.
chr1	207715515	.	C	.	.	LowGQX;LowMQ	END=207715671	GT	./.
chr1	207715672	.	C	.	.	LowGQX;LowMQ	END=207715673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:3:5
chr1	207715674	.	C	.	.	LowGQX;LowMQ	END=207715705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:3:4
chr1	207715706	.	G	.	.	LowGQX;LowMQ	END=207715731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:3:6
chr1	207715732	.	G	.	.	LowGQX;LowMQ	END=207715733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:3:6
chr1	207715734	.	G	.	.	LowGQX;LowMQ	END=207715754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:6:7
chr1	207715755	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:44:3:7
chr1	207715756	.	G	.	.	LowGQX;LowMQ	END=207715787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:6:6
chr1	207715788	.	C	.	.	LowGQX;LowMQ	END=207715801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:6:6
chr1	207715802	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:66:3:5
chr1	207715803	.	T	.	.	LowGQX;LowMQ	END=207715808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:6:5
chr1	207715809	.	C	.	.	LowGQX;LowMQ	END=207715810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:3:5
chr1	207715811	.	T	.	.	LowGQX;LowMQ	END=207715812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:9:5
chr1	207715813	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:66:3:5
chr1	207715814	.	A	.	.	LowGQX;LowMQ	END=207715822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:6:5
chr1	207715823	.	G	.	.	LowGQX;LowMQ	END=207715835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:3:4
chr1	207715836	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207715837	.	T	.	.	LowGQX;LowMQ	END=207715847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:3:4
chr1	207715848	.	T	.	.	LowGQX;LowMQ	END=207715849	GT	./.
chr1	207715850	.	G	.	.	LowGQX;LowMQ	END=207715852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:3:4
chr1	207715853	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207715854	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:54:3:4
chr1	207715855	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207715856	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:54:3:4
chr1	207715857	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207715858	.	A	.	.	LowGQX;LowMQ	END=207715859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:3:4
chr1	207715860	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207715861	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:52:3:4
chr1	207715862	.	C	.	.	LowGQX;LowMQ	END=207715863	GT	./.
chr1	207715864	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:52:3:4
chr1	207715865	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207715866	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:52:3:4
chr1	207715867	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207715868	.	C	.	.	LowGQX;LowMQ	END=207715869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:3:4
chr1	207715870	.	T	.	.	LowGQX;LowMQ	END=207715871	GT	./.
chr1	207715872	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:51:3:4
chr1	207715873	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207715874	.	A	.	.	LowGQX;LowMQ	END=207715878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:3:4
chr1	207715879	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207715880	.	C	.	.	LowGQX;LowMQ	END=207715883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:3:4
chr1	207715884	.	C	.	.	LowGQX;LowMQ	END=207715934	GT	./.
chr1	207718641	.	C	.	.	LowMQ	END=207718644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:54:18
chr1	207718645	.	C	.	.	PASS	END=207718649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:60:22
chr1	207718650	.	C	.	.	PASS	END=207718664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:72:27
chr1	207718665	.	C	.	.	PASS	END=207718721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:87:28
chr1	207718722	.	G	.	.	PASS	END=207718767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:27
chr1	207718768	.	G	.	.	PASS	END=207718789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:82:22
chr1	207718790	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:164:99:20
chr1	207718791	.	C	.	.	LowMQ	END=207718814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:93:15
chr1	207718815	.	C	.	.	LowMQ	END=207718829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:75:11
chr1	207718869	.	G	.	.	LowMQ	END=207718881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:45:7
chr1	207718882	.	A	.	.	LowMQ	END=207718902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:33:6
chr1	207718903	.	G	.	69.06	LowMQ	DP=222;MQ=6;MQ0=208	GT:AD:DP:GQ:MQ:GQX	0/0:162:222:39.07:6:39
chr1	207718904	.	T	.	.	LowMQ	END=207718930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:36:6
chr1	207718931	.	T	.	.	LowMQ	END=207718963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:30:6
chr1	207718964	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:169:21:6
chr1	207718965	.	G	.	.	LowMQ	END=207718973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:33:6
chr1	207718974	.	C	.	.	LowGQX;LowMQ	END=207719022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:21:6
chr1	207719023	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:147:12:7
chr1	207720544	.	G	.	.	LowGQX;LowMQ	END=207720708	GT	./.
chr1	207724008	.	A	.	.	LowGQX;LowMQ	END=207724367	GT	./.
chr1	207725308	.	G	.	.	LowGQX;LowMQ	END=207725506	GT	./.
chr1	207726045	.	G	.	.	LowMQ	END=207726060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:72:19
chr1	207726061	.	A	.	.	LowMQ	END=207726074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:81:18
chr1	207726075	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:73:55:18
chr1	207726076	.	A	.	.	LowMQ	END=207726088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:69:17
chr1	207726089	.	T	.	.	LowMQ	END=207726125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:81:15
chr1	207726126	.	G	.	.	LowMQ	END=207726137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:84:14
chr1	207726138	.	G	.	.	LowMQ	END=207726165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:72:11
chr1	207726166	.	G	.	.	LowMQ	END=207726201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:60:11
chr1	207726202	.	T	.	.	LowMQ	END=207726208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:48:11
chr1	207726209	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:101:27:11
chr1	207726210	.	A	.	.	LowMQ	END=207726238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:48:11
chr1	207726239	.	A	.	.	LowMQ	END=207726251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:33:10
chr1	207726252	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:75:30:9
chr1	207726253	.	C	.	.	LowGQX;LowMQ	END=207726254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:24:9
chr1	207726255	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:74:30:9
chr1	207731811	.	C	.	.	LowGQX;LowMQ	END=207731975	GT	./.
chr1	207732304	.	A	.	.	LowGQX;LowMQ	END=207732347	GT	./.
chr1	207732348	.	T	.	.	LowGQX	END=207732360	GT	./.
chr1	207732361	.	G	.	.	LowGQX;LowMQ	END=207732463	GT	./.
chr1	207734072	.	C	.	.	LowGQX;LowMQ	END=207734228	GT	./.
chr1	207734229	.	C	.	.	LowGQX;LowMQ	END=207734230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:3:5
chr1	207734231	.	C	.	.	LowGQX;LowMQ	END=207734232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:3:5
chr1	207734233	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734234	.	T	.	.	LowGQX;LowMQ	END=207734235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:3:5
chr1	207734236	.	T	.	.	LowGQX;LowMQ	END=207734238	GT	./.
chr1	207734239	.	T	.	.	LowGQX;LowMQ	END=207734241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:3:6
chr1	207734242	.	A	.	.	LowGQX;LowMQ	END=207734243	GT	./.
chr1	207734244	.	C	.	.	LowGQX;LowMQ	END=207734245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:3:5
chr1	207734246	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734247	.	C	.	.	LowGQX;LowMQ	END=207734249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:3:5
chr1	207734250	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734251	.	G	.	.	LowGQX;LowMQ	END=207734252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:3:5
chr1	207734253	.	C	.	.	LowGQX;LowMQ	END=207734254	GT	./.
chr1	207734255	.	A	.	.	LowGQX;LowMQ	END=207734259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:3:6
chr1	207734260	.	G	.	.	LowGQX;LowMQ	END=207734262	GT	./.
chr1	207734263	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:24:3:6
chr1	207734264	.	G	.	.	LowGQX;LowMQ	END=207734267	GT	./.
chr1	207734268	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:27:3:5
chr1	207734269	.	T	.	.	LowGQX;LowMQ	END=207734271	GT	./.
chr1	207734272	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:27:3:5
chr1	207734273	.	G	.	.	LowGQX;LowMQ	END=207734275	GT	./.
chr1	207734276	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:30:3:5
chr1	207734277	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734278	.	C	.	.	LowGQX;LowMQ	END=207734279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:3:5
chr1	207734280	.	G	.	.	LowGQX;LowMQ	END=207734281	GT	./.
chr1	207734282	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:29:3:5
chr1	207734283	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734284	.	C	.	.	LowGQX;LowMQ	END=207734305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:3:6
chr1	207734306	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734307	.	A	.	.	LowGQX;LowMQ	END=207734312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:3:6
chr1	207734313	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734314	.	C	.	.	LowGQX;LowMQ	END=207734339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:3:6
chr1	207734340	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:46:0:6
chr1	207734341	.	G	.	.	LowGQX;LowMQ	END=207734345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:3:6
chr1	207734346	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734347	.	G	.	.	LowGQX;LowMQ	END=207734353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:3:5
chr1	207734354	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734355	.	A	.	.	LowGQX;LowMQ	END=207734358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:3:5
chr1	207734359	.	T	.	.	LowGQX;LowMQ	END=207734360	GT	./.
chr1	207734361	.	A	.	.	LowGQX;LowMQ	END=207734362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:3:5
chr1	207734363	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734364	.	T	.	.	LowGQX;LowMQ	END=207734366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:3:5
chr1	207734367	.	C	.	.	LowGQX;LowMQ	END=207734368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:0:5
chr1	207734369	.	T	.	.	LowGQX;LowMQ	END=207734379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:3:5
chr1	207734380	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734381	.	T	.	.	LowGQX;LowMQ	END=207734382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:3:4
chr1	207734383	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734384	.	A	.	.	LowGQX;LowMQ	END=207734385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:3:4
chr1	207734386	.	T	.	.	LowGQX;LowMQ	END=207734387	GT	./.
chr1	207734388	.	T	.	.	LowGQX;LowMQ	END=207734391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:3:4
chr1	207734392	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734393	.	G	.	.	LowGQX;LowMQ	END=207734395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:3:4
chr1	207734396	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734397	.	G	.	.	LowGQX;LowMQ	END=207734398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:3:4
chr1	207734399	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734400	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:42:3:4
chr1	207734401	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734402	.	G	.	.	LowGQX;LowMQ	END=207734404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:3:4
chr1	207734405	.	T	.	.	LowGQX;LowMQ	END=207734406	GT	./.
chr1	207734407	.	G	.	.	LowGQX;LowMQ	END=207734409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:3:4
chr1	207734410	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734411	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:44:3:4
chr1	207734412	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734413	.	A	.	.	LowGQX;LowMQ	END=207734415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:3:4
chr1	207734416	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734417	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:41:3:4
chr1	207734418	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734419	.	C	.	.	LowGQX;LowMQ	END=207734445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:3:4
chr1	207734446	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734447	.	A	.	.	LowGQX;LowMQ	END=207734480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:3:4
chr1	207734481	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734482	.	G	.	.	LowGQX;LowMQ	END=207734485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:3:5
chr1	207734486	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr1	207734487	.	G	.	.	LowGQX;LowMQ	END=207734491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:3:5
chr1	207737197	.	C	.	.	PASS	END=207737207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:25
chr1	207737208	.	G	.	.	PASS	END=207737230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:29
chr1	207737231	.	C	.	.	PASS	END=207737256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:32
chr1	207737257	.	A	.	.	PASS	END=207737319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:35
chr1	207737320	.	G	.	.	PASS	END=207737351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:32
chr1	207737352	.	G	.	.	PASS	END=207737385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:28
chr1	207737476	.	G	.	.	PASS	END=207737522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:20
chr1	207737523	.	G	.	.	PASS	END=207737535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:22
chr1	207737536	.	A	.	.	PASS	END=207737579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:30
chr1	207739176	.	T	.	.	PASS	END=207739263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	207739264	.	T	.	.	PASS	END=207739275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	207741168	.	G	.	.	PASS	END=207741262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:59
chr1	207741263	.	A	.	.	PASS	END=207741344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:55
chr1	207741345	.	A	.	.	PASS	END=207741369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:56
chr1	207741370	.	C	.	.	PASS	END=207741383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:54
chr1	207741384	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:72:54
chr1	207741385	.	T	.	.	PASS	END=207741387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:54
chr1	207742403	.	G	.	.	LowGQX;LowMQ	END=207742601	GT	./.
chr1	207743140	.	G	.	.	LowGQX;LowMQ	END=207743156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:9:6
chr1	207743157	.	C	.	.	LowGQX;LowMQ	END=207743196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:9:6
chr1	207743197	.	T	.	.	LowGQX;LowMQ	END=207743212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:12:6
chr1	207743213	.	C	.	.	LowGQX;LowMQ	END=207743222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:15:6
chr1	207743223	.	G	.	.	LowGQX;LowMQ	END=207743229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:18:7
chr1	207743230	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:98:15:7
chr1	207743231	.	T	.	.	LowGQX;LowMQ	END=207743281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:21:7
chr1	207743282	.	G	.	.	LowGQX;LowMQ	END=207743285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:18:7
chr1	207743286	.	T	.	.	LowGQX;LowMQ	END=207743290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:21:7
chr1	207743291	.	G	.	.	LowGQX;LowMQ	END=207743295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:15:7
chr1	207748933	.	C	.	.	PASS	END=207749032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	207751149	.	G	.	.	PASS	END=207751169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	207751170	.	C	.	.	PASS	END=207751236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	207751237	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:36:60
chr1	207751238	.	C	.	.	PASS	END=207751258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	207751259	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:30:60
chr1	207751260	.	A	.	.	PASS	END=207751295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:54
chr1	207751296	.	T	.	.	PASS	END=207751304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:53
chr1	207751305	.	T	.	.	PASS	END=207751320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:47
chr1	207751321	.	A	.	.	PASS	END=207751322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:46
chr1	207751323	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:41:46
chr1	207751324	.	A	.	.	PASS	END=207751333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:45
chr1	207751334	.	C	.	.	PASS	END=207751342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:43
chr1	207751343	.	C	.	.	PASS	END=207751344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:43
chr1	207751345	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:72:43
chr1	207751346	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:36:43
chr1	207751347	.	G	.	.	PASS	END=207751355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:42
chr1	207751356	.	T	.	.	PASS	END=207751408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:39
chr1	207751409	.	A	.	.	PASS	END=207751432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:43
chr1	207751433	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:49:47
chr1	207751434	.	T	.	.	PASS	END=207751518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:47
chr1	207751519	.	G	.	.	PASS	END=207751548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:58
chr1	207753584	.	G	.	.	PASS	END=207753613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	207753614	.	G	.	.	PASS	END=207753726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:87:60
chr1	207753727	.	G	.	.	PASS	END=207753731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	207753732	.	A	.	.	PASS	END=207753749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	207753750	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:75:60
chr1	207753751	.	G	.	.	PASS	END=207753761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	207753855	.	G	.	.	PASS	END=207753950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	207753951	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:67:60
chr1	207753952	.	A	.	.	PASS	END=207753958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	207755256	.	T	.	.	PASS	END=207755331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	207755332	.	T	.	.	PASS	END=207755348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	207755349	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr1	207755350	.	T	.	.	PASS	END=207755355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	207757993	.	G	.	.	PASS	END=207758017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	207758018	.	C	.	.	PASS	END=207758073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	207758074	.	G	.	.	PASS	END=207758132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	207758133	.	G	.	.	PASS	END=207758162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	207758163	.	T	.	.	PASS	END=207758214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	207758215	.	C	.	.	PASS	END=207758221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	207760730	.	G	.	.	PASS	END=207760748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	207760749	.	A	.	.	PASS	END=207760766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	207760767	.	G	.	.	PASS	END=207760772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	207760773	.	C	T	2908.33	PASS	BaseQRankSum=2.006;DP=245;Dels=0.00;FS=0.492;HRun=0;HaplotypeScore=21.8296;MQ=60;MQ0=0;MQRankSum=0.048;QD=11.87;ReadPosRankSum=0.327;SB=-1432.47	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:125,120:245:99:2938,0,2983:60:99:0.490
chr1	207760774	.	G	.	.	PASS	END=207760898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	207760899	.	A	.	.	PASS	END=207760910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	207761969	.	A	.	.	PASS	END=207761988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	207761989	.	A	.	.	PASS	END=207762037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	207762038	.	C	.	.	PASS	END=207762061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	207762062	.	T	.	.	PASS	END=207762113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	207762114	.	T	.	.	PASS	END=207762119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	207780589	.	G	.	.	PASS	END=207780627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	207780628	.	G	.	.	PASS	END=207780654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	207780655	.	G	.	.	PASS	END=207780688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	207782634	.	G	.	.	PASS	END=207782651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	207782652	.	C	.	.	PASS	END=207782674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	207782675	.	C	.	.	PASS	END=207782778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	207782779	.	G	.	.	PASS	END=207782827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	207782828	.	C	.	.	PASS	END=207782842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:60
chr1	207782843	.	T	.	.	PASS	END=207782915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:321:99:60
chr1	207782916	.	A	T	9236.98	PASS	DP=318;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=15.2539;MQ=60;MQ0=0;QD=29.05;SB=-4362.24	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,318:318:99:9237,677,0:60:99:1.000
chr1	207782917	.	C	.	.	PASS	END=207782977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:280:99:60
chr1	207782978	.	T	.	.	PASS	END=207782990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	207782991	.	A	.	.	PASS	END=207783014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	207783015	.	C	.	.	PASS	END=207783033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	207785021	.	G	.	.	PASS	END=207785052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	207785053	.	T	.	.	PASS	END=207785173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	207785174	.	A	.	.	PASS	END=207785198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	207785283	.	G	.	.	PASS	END=207785386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	207787742	.	T	.	.	PASS	END=207787825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	207787826	.	T	.	.	PASS	END=207787835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	207787836	.	T	.	.	PASS	END=207787841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	207789919	.	G	.	.	PASS	END=207789969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	207789970	.	A	.	.	PASS	END=207790013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	207790014	.	A	.	.	PASS	END=207790095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	207790096	.	A	.	.	PASS	END=207790120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	207790121	.	C	.	.	PASS	END=207790147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	207791415	.	G	.	.	PASS	END=207791419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	207791420	.	C	.	.	PASS	END=207791435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	207791436	.	A	.	.	PASS	END=207791438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	207791439	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:18:60
chr1	207791440	.	A	.	.	PASS	END=207791467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	207791468	.	A	.	.	PASS	END=207791501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	207791502	.	A	.	.	PASS	END=207791554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	207791555	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:57:60
chr1	207791556	.	C	.	.	PASS	END=207791576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	207791577	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:45:60
chr1	207791578	.	A	.	.	PASS	END=207791592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	207793194	.	A	.	.	PASS	END=207793238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	207793239	.	T	.	.	PASS	END=207793407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	207793408	.	C	.	.	PASS	END=207793410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	207795280	.	G	.	.	PASS	END=207795319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	207795320	.	A	G	711.33	PASS	BaseQRankSum=-1.017;DP=93;Dels=0.00;FS=2.897;HRun=0;HaplotypeScore=11.4685;MQ=60;MQ0=0;MQRankSum=-0.818;QD=7.65;ReadPosRankSum=1.615;SB=-411.61	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:59,34:93:99:741,0,1552:60:99:0.366
chr1	207795321	.	C	.	.	PASS	END=207795379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	207796326	.	T	.	.	PASS	END=207796404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	207796405	.	C	.	.	PASS	END=207796425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:58
chr1	207803861	.	G	.	.	PASS	END=207803887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	207803888	.	A	.	.	PASS	END=207803909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	207803910	.	T	.	.	PASS	END=207803972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	207812698	.	G	.	.	PASS	END=207812746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:59
chr1	207812747	.	T	.	.	PASS	END=207812772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:58
chr1	207812773	.	A	.	.	PASS	END=207812797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:58
chr1	207818577	.	T	.	.	PASS	END=207818595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	207818596	.	T	.	.	PASS	END=207818624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	207818625	.	T	.	.	PASS	END=207818676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	207850733	.	G	.	.	PASS	END=207850740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	207850741	.	C	.	.	PASS	END=207850751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:59
chr1	207850752	.	A	.	.	PASS	END=207850763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:59
chr1	207850764	.	T	.	.	PASS	END=207850779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:59
chr1	207850780	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:63:60
chr1	207850781	.	C	.	.	PASS	END=207850808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	207850809	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:66:60
chr1	207850810	.	G	.	.	PASS	END=207850878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:82:60
chr1	207850879	.	C	T	884.22	PASS	BaseQRankSum=1.292;DP=51;Dels=0.00;FS=1.249;HRun=1;HaplotypeScore=3.8903;MQ=60;MQ0=0;MQRankSum=-0.258;QD=17.34;ReadPosRankSum=1.602;SB=-370.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:15,36:51:99:914,0,370:60:99:0.706
chr1	207850880	.	T	.	.	PASS	END=207850901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	207850902	.	A	.	.	PASS	END=207850913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	207851492	.	A	.	.	PASS	END=207851514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	207851515	.	G	.	.	PASS	END=207851562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:98:60
chr1	207851563	.	C	.	.	PASS	END=207851610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	207851611	.	A	G	1076.66	PASS	BaseQRankSum=-0.117;DP=70;Dels=0.00;FS=0.978;HRun=1;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=-0.547;QD=15.38;ReadPosRankSum=-0.055;SB=-586.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:27,42:70:99:1107,0,626:60:99:0.609
chr1	207851612	.	G	.	.	PASS	END=207851642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	207857210	.	C	.	.	PASS	END=207857309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	207867697	.	G	.	.	LowGQX	END=207867714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	207867715	.	C	.	.	LowGQX	END=207867777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	207867778	.	G	.	.	LowGQX	END=207867785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	207867786	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:60
chr1	207867787	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	207867788	.	A	.	.	LowGQX	END=207867789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	207867790	.	C	.	.	LowGQX	END=207867791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	207867792	.	C	.	.	LowGQX	END=207867802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	207867803	.	G	.	.	LowGQX	END=207867804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	207867805	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	207867806	.	G	.	.	LowGQX	END=207867809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	207867810	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	207867811	.	G	.	.	LowGQX	END=207867813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	207867814	.	A	.	.	LowGQX	END=207867818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	207867819	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:60
chr1	207867820	.	G	.	.	LowGQX	END=207867843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	207867844	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	207867845	.	C	.	.	PASS	END=207867870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	207867871	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:2:60
chr1	207867872	.	A	.	.	PASS	END=207867884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	207867885	.	G	.	.	PASS	END=207867896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	207867897	.	C	.	.	PASS	END=207867924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:59
chr1	207867925	.	A	.	.	PASS	END=207867927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:48:59
chr1	207867928	.	C	.	.	PASS	END=207867968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:59
chr1	207867969	.	A	.	.	PASS	END=207867999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:59
chr1	207868000	.	T	.	.	PASS	END=207868007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:59
chr1	207868008	.	T	.	.	PASS	END=207868040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	207868041	.	T	.	.	PASS	END=207868047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	207868048	.	T	.	.	PASS	END=207868054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	207868055	.	C	.	.	PASS	END=207868096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	207870847	.	G	.	.	PASS	END=207870893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	207870894	.	G	.	.	PASS	END=207870969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	207870970	.	T	.	.	PASS	END=207870990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	207870991	.	G	.	.	PASS	END=207871024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	207871115	.	G	.	.	PASS	END=207871140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	207871141	.	C	.	.	PASS	END=207871218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	207872527	.	T	.	.	PASS	END=207872594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:59
chr1	207872595	.	A	G	1043.99	PASS	BaseQRankSum=-1.000;DP=76;Dels=0.00;FS=2.110;HRun=2;HaplotypeScore=6.6284;MQ=59;MQ0=0;MQRankSum=1.000;QD=13.74;ReadPosRankSum=0.427;SB=-375.87	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,41:76:99:1074,0,896:59:99:0.539
chr1	207872596	.	A	.	.	PASS	END=207872612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:59
chr1	207872613	.	T	.	.	PASS	END=207872626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:59
chr1	207874863	.	G	.	.	PASS	END=207874902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	207874903	.	T	.	.	PASS	END=207874962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	207874963	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:106:99:60
chr1	207875023	.	G	.	.	PASS	END=207875053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	207875054	.	C	.	.	PASS	END=207875058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	207875059	.	T	.	.	PASS	END=207875062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	207875063	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:72:60
chr1	207875064	.	T	.	.	PASS	END=207875071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	207875072	.	T	.	.	PASS	END=207875091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	207875092	.	C	.	.	PASS	END=207875120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	207875121	.	G	.	.	PASS	END=207875122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	207881516	.	C	.	.	PASS	END=207881556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	207881557	.	A	G	2742.26	PASS	DP=103;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=16.2031;MQ=60;MQ0=0;QD=26.62;SB=-1754.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,102:103:99:2775,208,0:60:99:1.000
chr1	207881558	.	T	.	.	PASS	END=207881576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	207881577	.	C	.	.	PASS	END=207881615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	207888609	.	G	.	.	PASS	END=207888623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:59
chr1	207888624	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:66:59
chr1	207888625	.	A	.	.	PASS	END=207888678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:90:59
chr1	207888679	.	G	.	.	PASS	END=207888708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:59
chr1	207890808	.	G	.	.	PASS	END=207890863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	207890864	.	C	.	.	PASS	END=207890909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:93:60
chr1	207890910	.	C	.	.	PASS	END=207891009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:89:60
chr1	207891010	.	C	.	.	PASS	END=207891031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	207891032	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:66:60
chr1	207891033	.	G	.	.	PASS	END=207891036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	207896947	.	T	.	.	PASS	END=207897005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	207897006	.	T	.	.	PASS	END=207897046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	207925507	.	T	.	.	PASS	END=207925551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	207925552	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:63:60
chr1	207925553	.	C	.	.	PASS	END=207925594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:78:60
chr1	207925595	.	C	.	.	PASS	END=207925635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	207925636	.	C	.	.	PASS	END=207925698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	207925699	.	C	.	.	PASS	END=207925703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	207925704	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:70:60
chr1	207925705	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:99:60
chr1	207930308	.	T	.	.	PASS	END=207930324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:58
chr1	207930325	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:36:58
chr1	207930326	.	T	.	.	PASS	END=207930341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:58
chr1	207930342	.	T	.	.	PASS	END=207930362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:59
chr1	207930363	.	C	.	.	PASS	END=207930385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:59
chr1	207930386	.	A	.	.	PASS	END=207930442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:59
chr1	207930443	.	A	.	.	PASS	END=207930464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	207930465	.	C	.	.	PASS	END=207930548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	207930549	.	T	.	.	PASS	END=207930598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	207930834	.	C	.	.	PASS	END=207930847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	207930848	.	A	.	.	PASS	END=207930901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	207930902	.	A	.	.	PASS	END=207931038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	207932933	.	G	.	.	PASS	END=207932983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	207932984	.	T	.	.	PASS	END=207933081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	207933082	.	T	.	.	PASS	END=207933107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:82:60
chr1	207933108	.	C	.	.	PASS	END=207933120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	207934543	.	A	.	.	PASS	END=207934600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	207934601	.	G	.	.	PASS	END=207934642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	207934643	.	T	.	.	PASS	END=207934737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	207934738	.	C	.	.	PASS	END=207934805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	207934806	.	T	.	.	PASS	END=207934842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	207940307	.	T	.	.	PASS	END=207940331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	207940332	.	A	.	.	PASS	END=207940352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	207940353	.	T	.	.	PASS	END=207940374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	207940375	.	C	.	.	PASS	END=207940398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	207940399	.	A	.	.	PASS	END=207940457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	207940458	.	G	.	.	PASS	END=207940505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	207940506	.	T	.	.	PASS	END=207940538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	207940539	.	A	.	.	PASS	END=207940544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	207940545	.	A	.	.	PASS	END=207940552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	207940553	.	T	.	.	PASS	END=207940585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	207940586	.	C	.	.	PASS	END=207940589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	207940590	.	T	.	.	PASS	END=207940591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	207940901	.	A	.	.	PASS	END=207940925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	207940926	.	T	.	.	PASS	END=207940945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	207940946	.	T	.	.	PASS	END=207940961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	207940962	.	A	.	.	PASS	END=207940995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	207940996	.	G	.	.	PASS	END=207941047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	207941073	.	C	.	.	PASS	END=207941112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	207941113	.	T	.	.	PASS	END=207941190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	207941191	.	G	T	2011.30	PASS	DP=63;Dels=0.00;FS=0.000;HRun=5;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=31.93;SB=-770.38	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,63:63:99:2044,156,0:60:99:1.000
chr1	207941192	.	T	.	.	PASS	END=207941219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	207943615	.	T	.	.	PASS	END=207943651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	207943652	.	A	.	.	PASS	END=207943672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	207943673	.	G	.	.	PASS	END=207943758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	207956586	.	A	.	.	PASS	END=207956696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	207956697	.	A	.	.	PASS	END=207956722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	207956723	.	C	.	.	PASS	END=207956726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	207958364	.	T	.	.	PASS	END=207958426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	207958427	.	A	.	.	PASS	END=207958459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	207958460	.	C	.	.	PASS	END=207958472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	207958473	.	A	.	.	PASS	END=207958481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	207958482	.	G	.	.	PASS	END=207958498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	207958499	.	A	.	.	PASS	END=207958502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	207958913	.	T	.	.	PASS	END=207958920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	207958921	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:63:60
chr1	207958922	.	G	.	.	PASS	END=207958930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	207958931	.	A	.	.	PASS	END=207958940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	207958941	.	A	.	.	PASS	END=207958966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	207958967	.	T	.	.	PASS	END=207958989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	207958990	.	G	.	.	PASS	END=207959078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:61
chr1	207963547	.	T	.	.	PASS	END=207963591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	207963592	.	G	.	.	PASS	END=207963615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	207963616	.	G	.	.	PASS	END=207963681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	207963682	.	C	.	.	PASS	END=207963700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	207966813	.	T	.	.	PASS	END=207966840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	207966841	.	G	.	.	PASS	END=207966864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	207966865	.	A	.	.	PASS	END=207966886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	207966887	.	A	.	.	PASS	END=207966991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	207975191	.	T	.	.	LowGQX	END=207975290	GT	./.
chr1	207975779	.	C	.	.	LowGQX	.	GT	./.
chr1	207975780	.	A	.	.	LowGQX	END=207975784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207975785	.	T	.	.	LowGQX	END=207975787	GT	./.
chr1	207975788	.	C	.	.	LowGQX	END=207975798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207975799	.	C	.	.	LowGQX	.	GT	./.
chr1	207975800	.	T	.	.	LowGQX	END=207975809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207975810	.	T	.	.	LowGQX	.	GT	./.
chr1	207975811	.	G	.	.	LowGQX	END=207975812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207975813	.	T	.	.	LowGQX	.	GT	./.
chr1	207975814	.	G	.	.	LowGQX	END=207975816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207975817	.	A	.	.	LowGQX	.	GT	./.
chr1	207975818	.	G	.	.	LowGQX	END=207975829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207975830	.	G	.	.	LowGQX	.	GT	./.
chr1	207975831	.	A	.	.	LowGQX	END=207975832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207975833	.	A	.	.	LowGQX	.	GT	./.
chr1	207975834	.	A	.	.	LowGQX	END=207975839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207975840	.	A	.	.	LowGQX	.	GT	./.
chr1	207975841	.	G	.	.	LowGQX	END=207975844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207975845	.	C	.	.	LowGQX	END=207975846	GT	./.
chr1	207975847	.	A	.	.	LowGQX	END=207975849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207975850	.	T	.	.	LowGQX	END=207975878	GT	./.
chr1	207990694	.	A	.	.	LowGQX	END=207990793	GT	./.
chr1	207992306	.	C	.	.	LowGQX	END=207992309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	207992310	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	207992311	.	T	.	.	LowGQX	END=207992315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	207992316	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	207992317	.	T	.	.	LowGQX	END=207992350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	207992351	.	C	.	.	LowGQX	.	GT	./.
chr1	207992352	.	T	.	.	LowGQX	END=207992376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	207992377	.	C	.	.	LowGQX	.	GT	./.
chr1	207992378	.	C	.	.	LowGQX	END=207992382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	207992383	.	T	.	.	LowGQX	.	GT	./.
chr1	207992384	.	A	.	.	LowGQX	END=207992385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207992386	.	G	.	.	LowGQX	.	GT	./.
chr1	207992387	.	G	.	.	LowGQX	END=207992389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207992390	.	C	.	.	LowGQX	.	GT	./.
chr1	207992391	.	A	.	.	LowGQX	END=207992400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207992401	.	C	.	.	LowGQX	.	GT	./.
chr1	207992402	.	C	.	.	LowGQX	END=207992427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207992428	.	T	.	.	LowGQX	.	GT	./.
chr1	207992429	.	G	.	.	LowGQX	END=207992440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	207992441	.	T	.	.	LowGQX	END=207992491	GT	./.
chr1	208040883	.	T	.	.	LowGQX	END=208041032	GT	./.
chr1	208041033	.	G	.	.	LowGQX	END=208041212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208041270	.	C	.	.	LowGQX	END=208041351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208041352	.	T	.	.	LowGQX	END=208041369	GT	./.
chr1	208042331	.	C	.	.	LowGQX	END=208042495	GT	./.
chr1	208050275	.	A	.	.	LowGQX	END=208050288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	208050289	.	G	.	.	LowGQX	END=208050290	GT	./.
chr1	208050291	.	A	.	.	LowGQX	END=208050300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	208050301	.	A	G	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	208050302	.	T	.	.	LowGQX	END=208050312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	208050313	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	208050314	.	G	.	.	LowGQX	END=208050323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	208050324	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	208050325	.	C	.	.	LowGQX	END=208050342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	208050343	.	G	.	.	LowGQX	.	GT	./.
chr1	208050344	.	A	.	.	LowGQX	END=208050346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208050347	.	T	.	.	LowGQX	END=208050348	GT	./.
chr1	208050349	.	T	.	.	LowGQX	END=208050351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208050352	.	C	.	.	LowGQX	.	GT	./.
chr1	208050353	.	C	.	.	LowGQX	END=208050354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208050355	.	G	.	.	LowGQX	.	GT	./.
chr1	208050356	.	A	.	.	LowGQX	END=208050359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208050360	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	208050361	.	G	.	.	LowGQX	END=208050364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208050365	.	T	.	.	LowGQX	.	GT	./.
chr1	208050366	.	G	.	.	LowGQX	END=208050369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208050370	.	G	.	.	LowGQX	.	GT	./.
chr1	208050371	.	T	.	.	LowGQX	END=208050374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208061081	.	A	.	.	LowGQX	END=208061095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208061096	.	T	.	.	LowGQX	.	GT	./.
chr1	208061097	.	C	.	.	LowGQX	END=208061138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208061139	.	T	.	.	LowGQX	END=208061270	GT	./.
chr1	208061407	.	G	.	.	LowGQX	END=208061506	GT	./.
chr1	208062025	.	A	.	.	LowGQX	END=208062193	GT	./.
chr1	208062483	.	G	.	.	LowGQX	END=208062582	GT	./.
chr1	208062808	.	A	.	.	LowGQX	END=208062968	GT	./.
chr1	208063018	.	C	.	.	LowGQX	END=208063127	GT	./.
chr1	208063128	.	G	.	.	LowGQX	END=208063228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208070829	.	T	.	.	LowGQX	END=208070928	GT	./.
chr1	208072316	.	A	.	.	LowGQX	END=208072427	GT	./.
chr1	208072428	.	G	.	.	LowGQX	END=208072573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208073164	.	A	.	.	LowGQX	END=208073350	GT	./.
chr1	208084277	.	C	.	.	LowGQX	END=208084436	GT	./.
chr1	208200586	.	T	.	.	LowGQX	END=208200685	GT	./.
chr1	208201352	.	A	.	.	LowGQX	END=208201506	GT	./.
chr1	208202173	.	A	.	.	LowGQX	END=208202422	GT	./.
chr1	208204922	.	C	.	.	LowGQX	END=208205106	GT	./.
chr1	208206662	.	A	.	.	LowGQX	END=208206718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208206719	.	T	.	.	LowGQX	.	GT	./.
chr1	208206720	.	C	.	.	LowGQX	END=208206730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208206731	.	T	.	.	LowGQX	.	GT	./.
chr1	208206732	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208206733	.	G	.	.	LowGQX	END=208206734	GT	./.
chr1	208206735	.	C	.	.	LowGQX	END=208206742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208206743	.	T	.	.	LowGQX	.	GT	./.
chr1	208206744	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208206745	.	A	.	.	LowGQX	.	GT	./.
chr1	208206746	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208206747	.	G	.	.	LowGQX	.	GT	./.
chr1	208206748	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208206749	.	T	.	.	LowGQX	.	GT	./.
chr1	208206750	.	T	.	.	LowGQX	END=208206814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208206815	.	C	.	.	LowGQX	END=208206856	GT	./.
chr1	208207836	.	A	.	.	LowGQX	END=208207939	GT	./.
chr1	208211714	.	A	.	.	LowGQX	END=208211821	GT	./.
chr1	208212168	.	A	.	.	LowGQX	END=208212331	GT	./.
chr1	208212964	.	A	.	.	LowGQX	END=208213114	GT	./.
chr1	208213261	.	C	.	.	LowGQX	END=208213283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208213284	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	208213285	.	A	.	.	LowGQX	END=208213302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208213303	.	T	.	.	LowGQX	END=208213420	GT	./.
chr1	208215441	.	A	.	.	LowGQX	END=208215713	GT	./.
chr1	208216404	.	A	.	.	LowGQX	END=208216550	GT	./.
chr1	208217851	.	A	.	.	LowGQX	END=208218089	GT	./.
chr1	208218410	.	A	.	.	LowGQX	END=208218557	GT	./.
chr1	208219221	.	A	.	.	LowGQX	END=208219464	GT	./.
chr1	208224351	.	C	.	.	LowGQX	END=208224450	GT	./.
chr1	208224599	.	A	.	.	LowGQX	END=208224720	GT	./.
chr1	208224721	.	C	.	.	LowGQX	END=208224788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208225670	.	A	.	.	LowGQX	END=208225810	GT	./.
chr1	208227764	.	A	.	.	LowGQX	END=208227885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208234029	.	A	.	.	LowGQX	END=208234184	GT	./.
chr1	208252603	.	A	.	.	LowGQX	END=208252658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208252659	.	G	.	.	LowGQX	END=208252797	GT	./.
chr1	208255755	.	A	.	.	LowGQX	END=208255757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208255758	.	T	.	.	LowGQX	END=208255759	GT	./.
chr1	208255760	.	T	.	.	LowGQX	END=208255761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208255762	.	A	.	.	LowGQX	.	GT	./.
chr1	208255763	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208255764	.	G	.	.	LowGQX	END=208255765	GT	./.
chr1	208255766	.	C	.	.	LowGQX	END=208255770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208255771	.	G	.	.	LowGQX	.	GT	./.
chr1	208255772	.	G	.	.	LowGQX	END=208255773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208255774	.	T	.	.	LowGQX	END=208255775	GT	./.
chr1	208255776	.	G	.	.	LowGQX	END=208255777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208255778	.	C	.	.	LowGQX	.	GT	./.
chr1	208255779	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208255780	.	A	.	.	LowGQX	END=208255781	GT	./.
chr1	208255782	.	G	.	.	LowGQX	END=208255783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208255784	.	T	.	.	LowGQX	.	GT	./.
chr1	208255785	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208255786	.	A	.	.	LowGQX	.	GT	./.
chr1	208255787	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208255788	.	A	.	.	LowGQX	.	GT	./.
chr1	208255789	.	T	.	.	LowGQX	END=208255792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208255793	.	C	.	.	LowGQX	.	GT	./.
chr1	208255794	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208255795	.	T	.	.	LowGQX	.	GT	./.
chr1	208255796	.	T	.	.	LowGQX	END=208255798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208255799	.	A	.	.	LowGQX	.	GT	./.
chr1	208255800	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208255801	.	A	.	.	LowGQX	.	GT	./.
chr1	208255802	.	C	.	.	LowGQX	END=208255803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208255804	.	A	.	.	LowGQX	END=208255806	GT	./.
chr1	208255807	.	G	.	.	LowGQX	END=208255808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208255809	.	G	.	.	LowGQX	.	GT	./.
chr1	208255810	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	208255811	.	A	.	.	LowGQX	END=208255812	GT	./.
chr1	208255813	.	T	.	.	LowGQX	END=208255815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208255816	.	A	.	.	LowGQX	END=208255817	GT	./.
chr1	208255818	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208255819	.	G	.	.	LowGQX	END=208255855	GT	./.
chr1	208257723	.	A	.	.	LowGQX	END=208257927	GT	./.
chr1	208266129	.	A	.	.	LowGQX	END=208266247	GT	./.
chr1	208269372	.	A	.	.	LowGQX	END=208269472	GT	./.
chr1	208270073	.	A	.	.	LowGQX	END=208270077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	208270078	.	G	.	.	LowGQX	.	GT	./.
chr1	208270079	.	A	.	.	LowGQX	END=208270119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	208270120	.	T	.	.	LowGQX	.	GT	./.
chr1	208270121	.	G	.	.	LowGQX	END=208270126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	208270127	.	G	.	.	LowGQX	.	GT	./.
chr1	208270128	.	A	.	.	LowGQX	END=208270129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	208270130	.	C	.	.	LowGQX	.	GT	./.
chr1	208270131	.	T	.	.	LowGQX	END=208270154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	208270155	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	208270156	.	C	.	.	LowGQX	END=208270160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	208270161	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	208270162	.	T	.	.	LowGQX	END=208270186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208270187	.	A	.	.	LowGQX	.	GT	./.
chr1	208270188	.	C	.	.	LowGQX	END=208270190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208270191	.	G	.	.	LowGQX	END=208270192	GT	./.
chr1	208270193	.	A	.	.	LowGQX	END=208270200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208270201	.	C	.	.	LowGQX	END=208270230	GT	./.
chr1	208272189	.	A	.	.	LowGQX	END=208272278	GT	./.
chr1	208272279	.	T	.	.	LowGQX	END=208272316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	208276439	.	A	.	.	LowGQX	END=208276594	GT	./.
chr1	208315672	.	A	.	.	LowGQX	END=208315789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	208315790	.	G	.	.	LowGQX	END=208315810	GT	./.
chr1	208383499	.	T	.	.	LowGQX	END=208383720	GT	./.
chr1	208383721	.	G	.	.	LowGQX	END=208383809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	208390078	.	A	.	.	LowGQX	END=208391429	GT	./.
chr1	209602642	.	C	.	.	LowGQX	END=209602753	GT	./.
chr1	209603746	.	C	.	.	LowGQX	END=209603845	GT	./.
chr1	209605478	.	A	.	.	LowGQX	END=209605484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	209605485	.	C	.	.	LowGQX	END=209605493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	209605494	.	T	.	.	LowGQX	END=209605510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	209605511	.	T	.	.	LowGQX	END=209605513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	209605514	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	209605515	.	T	.	.	LowGQX	END=209605519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	209605520	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	209605521	.	C	.	.	LowGQX	END=209605524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	209605525	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	209605526	.	G	.	.	LowGQX	END=209605531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	209605532	.	G	.	.	LowGQX	END=209605535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	209605536	.	C	.	.	LowGQX	END=209605539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	209605540	.	C	.	.	LowGQX	END=209605542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	209605543	.	A	.	.	LowGQX	END=209605544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:60
chr1	209605545	.	C	.	.	LowGQX	END=209605547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	209605548	.	G	.	.	LowGQX	END=209605549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:60
chr1	209605550	.	T	.	.	LowGQX	END=209605553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	209605554	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	209605555	.	G	.	.	LowGQX	END=209605559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	209605560	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	209605561	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	209605562	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	209605563	.	A	.	.	LowGQX	END=209605564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr1	209605565	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	209605566	.	T	.	.	LowGQX	END=209605571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	209605572	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	209605573	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	209605574	.	G	.	.	PASS	END=209605575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	209605576	.	A	.	.	LowGQX	END=209605586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:60
chr1	209605587	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	209605588	.	A	.	.	LowGQX	END=209605589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:60
chr1	209605590	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chr1	209605591	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	209605592	.	T	.	.	PASS	END=209605593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	209605594	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	209605595	.	G	.	.	PASS	END=209605597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	209605598	.	C	.	.	PASS	END=209605601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	209605602	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:2:60
chr1	209605603	.	C	.	.	PASS	END=209605608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:33:60
chr1	209605609	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:48:60
chr1	209605610	.	C	.	.	PASS	END=209605613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:60
chr1	209605614	.	A	.	.	PASS	END=209605618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:30:60
chr1	209605619	.	C	.	.	PASS	END=209605628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:60
chr1	209605629	.	A	.	.	PASS	END=209605630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:33:60
chr1	209605631	.	C	.	.	PASS	END=209605636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:39:60
chr1	209605637	.	A	.	.	PASS	END=209605683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	209605684	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:3:60
chr1	209605685	.	T	.	.	PASS	END=209605690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	209605691	.	T	.	.	PASS	END=209605694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	209768325	.	G	.	.	LowGQX	END=209768334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	209768335	.	C	.	.	LowGQX	.	GT	./.
chr1	209768336	.	G	.	.	LowGQX	END=209768347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	209768348	.	A	.	.	LowGQX	.	GT	./.
chr1	209768349	.	T	.	.	LowGQX	END=209768352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	209768353	.	T	.	.	LowGQX	.	GT	./.
chr1	209768354	.	G	.	.	LowGQX	END=209768365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	209768366	.	A	.	.	LowGQX	.	GT	./.
chr1	209768367	.	G	.	.	LowGQX	END=209768424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	209773286	.	C	.	.	LowGQX	END=209773458	GT	./.
chr1	209776487	.	G	.	.	LowGQX	END=209776497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	209776498	.	G	.	.	LowGQX	.	GT	./.
chr1	209776499	.	C	.	.	LowGQX	END=209776519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	209776520	.	G	.	.	LowGQX	END=209776646	GT	./.
chr1	209778879	.	A	.	.	LowGQX	END=209779021	GT	./.
chr1	209779663	.	A	.	.	LowGQX	END=209779790	GT	./.
chr1	209781191	.	G	.	.	LowGQX	END=209781290	GT	./.
chr1	209782323	.	A	.	.	LowGQX	END=209782439	GT	./.
chr1	209783186	.	C	.	.	LowGQX	END=209783285	GT	./.
chr1	209784804	.	C	.	.	LowGQX	END=209784903	GT	./.
chr1	209785135	.	A	.	.	LowGQX	END=209785356	GT	./.
chr1	209785357	.	G	.	.	LowGQX	END=209785370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785371	.	C	.	.	LowGQX	END=209785373	GT	./.
chr1	209785374	.	G	.	.	LowGQX	END=209785380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785381	.	G	.	.	LowGQX	.	GT	./.
chr1	209785382	.	G	.	.	LowGQX	END=209785383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785384	.	C	.	.	LowGQX	.	GT	./.
chr1	209785385	.	C	.	.	LowGQX	END=209785387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785388	.	C	.	.	LowGQX	END=209785390	GT	./.
chr1	209785391	.	C	.	.	LowGQX	END=209785395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785396	.	T	.	.	LowGQX	END=209785399	GT	./.
chr1	209785400	.	C	.	.	LowGQX	END=209785402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785403	.	T	.	.	LowGQX	.	GT	./.
chr1	209785404	.	G	.	.	LowGQX	END=209785410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785411	.	T	.	.	LowGQX	.	GT	./.
chr1	209785412	.	C	.	.	LowGQX	END=209785417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785418	.	C	.	.	LowGQX	END=209785419	GT	./.
chr1	209785420	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785421	.	C	.	.	LowGQX	.	GT	./.
chr1	209785422	.	A	.	.	LowGQX	END=209785425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785426	.	G	.	.	LowGQX	.	GT	./.
chr1	209785427	.	C	.	.	LowGQX	END=209785428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785429	.	T	.	.	LowGQX	END=209785431	GT	./.
chr1	209785432	.	T	.	.	LowGQX	END=209785434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785435	.	C	.	.	LowGQX	.	GT	./.
chr1	209785436	.	C	.	.	LowGQX	END=209785441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785442	.	T	.	.	LowGQX	.	GT	./.
chr1	209785443	.	C	.	.	LowGQX	END=209785444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785445	.	G	.	.	LowGQX	END=209785446	GT	./.
chr1	209785447	.	G	.	.	LowGQX	END=209785448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785449	.	T	.	.	LowGQX	.	GT	./.
chr1	209785450	.	C	.	.	LowGQX	END=209785452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785453	.	T	.	.	LowGQX	END=209785455	GT	./.
chr1	209785456	.	C	.	.	LowGQX	END=209785460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785461	.	G	.	.	LowGQX	.	GT	./.
chr1	209785462	.	G	.	.	LowGQX	END=209785474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785475	.	C	.	.	LowGQX	END=209785477	GT	./.
chr1	209785478	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785479	.	T	.	.	LowGQX	.	GT	./.
chr1	209785480	.	C	.	.	LowGQX	END=209785488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785489	.	T	.	.	LowGQX	.	GT	./.
chr1	209785490	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785491	.	A	.	.	LowGQX	.	GT	./.
chr1	209785492	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785493	.	C	.	.	LowGQX	.	GT	./.
chr1	209785494	.	A	.	.	LowGQX	END=209785495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785496	.	T	.	.	LowGQX	.	GT	./.
chr1	209785497	.	G	.	.	LowGQX	END=209785499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785500	.	A	.	.	LowGQX	END=209785504	GT	./.
chr1	209785505	.	A	.	.	LowGQX	END=209785506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785507	.	G	.	.	LowGQX	END=209785523	GT	./.
chr1	209785524	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785525	.	C	.	.	LowGQX	.	GT	./.
chr1	209785526	.	T	.	.	LowGQX	END=209785528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785529	.	G	.	.	LowGQX	.	GT	./.
chr1	209785530	.	C	.	.	LowGQX	END=209785534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785535	.	A	.	.	LowGQX	.	GT	./.
chr1	209785536	.	C	.	.	LowGQX	END=209785540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785541	.	C	.	.	LowGQX	.	GT	./.
chr1	209785542	.	A	.	.	LowGQX	END=209785544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785545	.	A	.	.	LowGQX	END=209785548	GT	./.
chr1	209785549	.	C	.	.	LowGQX	END=209785550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785551	.	A	.	.	LowGQX	.	GT	./.
chr1	209785552	.	A	.	.	LowGQX	END=209785554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785555	.	A	.	.	LowGQX	END=209785556	GT	./.
chr1	209785557	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785558	.	A	.	.	LowGQX	.	GT	./.
chr1	209785559	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785560	.	C	.	.	LowGQX	.	GT	./.
chr1	209785561	.	A	.	.	LowGQX	END=209785562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785563	.	T	.	.	LowGQX	END=209785564	GT	./.
chr1	209785565	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785566	.	G	.	.	LowGQX	END=209785568	GT	./.
chr1	209785569	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785570	.	T	.	.	LowGQX	.	GT	./.
chr1	209785571	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785572	.	T	.	.	LowGQX	.	GT	./.
chr1	209785573	.	T	.	.	LowGQX	END=209785577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785578	.	A	.	.	LowGQX	END=209785579	GT	./.
chr1	209785580	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785581	.	G	.	.	LowGQX	END=209785582	GT	./.
chr1	209785583	.	T	.	.	LowGQX	END=209785588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785589	.	C	.	.	LowGQX	.	GT	./.
chr1	209785590	.	C	.	.	LowGQX	END=209785591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785592	.	A	.	.	LowGQX	.	GT	./.
chr1	209785593	.	G	.	.	LowGQX	END=209785596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209785597	.	G	.	.	LowGQX	.	GT	./.
chr1	209785598	.	G	.	.	LowGQX	END=209785604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209786126	.	C	.	.	LowGQX	END=209786225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209788565	.	C	.	.	PASS	END=209788626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	209788627	.	T	.	.	PASS	END=209788643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	209788644	.	C	.	.	PASS	END=209788708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	209788709	.	C	.	.	PASS	END=209788783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	209788784	.	A	.	.	PASS	END=209788803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	209789765	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:30:60
chr1	209789766	.	C	.	.	PASS	END=209789779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	209789780	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:18:60
chr1	209789781	.	G	.	.	PASS	END=209789794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	209789795	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:69:60
chr1	209789796	.	C	.	.	PASS	END=209789797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	209789798	.	C	.	.	PASS	END=209789799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:66:60
chr1	209789800	.	T	.	.	PASS	END=209789808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	209789809	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr1	209789810	.	C	.	.	PASS	END=209789834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	209789835	.	C	.	.	PASS	END=209789860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	209789861	.	C	.	.	PASS	END=209789886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	209789887	.	C	.	.	PASS	END=209789924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	209789925	.	C	.	.	PASS	END=209789986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	209789987	.	G	.	.	PASS	END=209790016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	209790017	.	C	.	.	PASS	END=209790020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	209790704	.	G	.	.	PASS	END=209790725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	209790726	.	T	.	.	PASS	END=209790748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	209790749	.	C	.	.	PASS	END=209790776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	209790777	.	T	.	.	PASS	END=209790890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	209790891	.	C	.	.	PASS	END=209790914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	209790915	.	C	.	.	PASS	END=209790939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	209790940	.	A	.	.	PASS	END=209790964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	209790965	.	T	.	.	PASS	END=209790982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	209791201	.	A	.	.	PASS	END=209791217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	209791218	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:76:60
chr1	209791219	.	C	.	.	PASS	END=209791253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	209791254	.	C	.	.	PASS	END=209791314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	209791315	.	T	.	.	PASS	END=209791382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:81:60
chr1	209791383	.	G	.	.	PASS	END=209791390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	209791391	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:66:60
chr1	209791392	.	T	.	.	PASS	END=209791407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	209791408	.	C	.	.	PASS	END=209791424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:74:60
chr1	209791425	.	A	.	.	PASS	END=209791434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	209791435	.	T	.	.	PASS	END=209791441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr1	209791442	.	T	.	.	PASS	END=209791444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	209791746	.	A	.	.	PASS	END=209791747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	209791748	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:51:60
chr1	209791749	.	C	.	.	PASS	END=209791770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	209791771	.	G	.	.	PASS	END=209791783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	209791784	.	C	.	.	PASS	END=209791841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	209791842	.	T	.	.	PASS	END=209791896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	209791897	.	C	.	.	PASS	END=209791955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	209791956	.	A	.	.	PASS	END=209791993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	209791994	.	A	.	.	PASS	END=209792015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	209792015	.	A	AC	1876.23	PASS	DP=50;FS=0.000;HRun=1;HaplotypeScore=62.8243;MQ=60;MQ0=0;QD=37.52;SB=-349.34	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:4,46:50:99:1918,138,0:60:99:0.920
chr1	209792016	.	C	.	.	PASS	END=209792033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	209792034	.	A	.	.	PASS	END=209792035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	209792036	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:51:60
chr1	209792037	.	C	.	.	PASS	END=209792045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	209792046	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:39:60
chr1	209792047	.	C	.	.	PASS	END=209792055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	209795830	.	G	.	.	PASS	END=209795832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	209795833	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:36:60
chr1	209795834	.	A	.	.	PASS	END=209795848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:59
chr1	209795849	.	A	.	.	PASS	END=209795861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:59
chr1	209795862	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:54:59
chr1	209795863	.	G	.	.	PASS	END=209795870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:59
chr1	209795871	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:60:60
chr1	209795872	.	T	.	.	PASS	END=209795888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:80:60
chr1	209795889	.	A	.	.	PASS	END=209795911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	209795912	.	G	.	.	PASS	END=209796016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	209796017	.	T	.	.	PASS	END=209796047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	209796048	.	A	.	.	PASS	END=209796061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	209796062	.	C	.	.	PASS	END=209796070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	209796071	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:66:60
chr1	209796072	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:60
chr1	209796073	.	C	.	.	PASS	END=209796076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	209796276	.	A	.	.	PASS	END=209796291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	209796292	.	C	.	.	PASS	END=209796301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	209796302	.	C	.	.	PASS	END=209796316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	209796317	.	C	.	.	PASS	END=209796342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	209796343	.	T	.	.	PASS	END=209796447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	209796448	.	G	.	.	PASS	END=209796469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	209796470	.	G	.	.	PASS	END=209796493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	209796494	.	T	.	.	PASS	END=209796525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	209796526	.	T	.	.	PASS	END=209796535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	209796536	.	T	.	.	PASS	END=209796563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	209796564	.	C	.	.	PASS	END=209796566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	209796567	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:57:60
chr1	209796568	.	C	.	.	PASS	END=209796575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:89:60
chr1	209796799	.	G	.	.	PASS	END=209796823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	209796824	.	A	.	.	PASS	END=209796834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	209796835	.	C	.	.	PASS	END=209796875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	209796876	.	G	.	.	PASS	END=209796907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	209796908	.	A	.	.	PASS	END=209796977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	209796978	.	C	.	.	PASS	END=209797032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	209797033	.	T	.	.	PASS	END=209797121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	209797134	.	C	.	.	PASS	END=209797159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	209797160	.	G	.	.	PASS	END=209797228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	209797229	.	C	.	.	PASS	END=209797310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	209797311	.	G	.	.	PASS	END=209797338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	209797339	.	A	.	.	PASS	END=209797382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	209797383	.	G	.	.	PASS	END=209797396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	209798942	.	G	.	.	PASS	END=209798968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	209798969	.	T	.	.	PASS	END=209798994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	209798995	.	G	.	.	PASS	END=209799020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	209799021	.	G	.	.	PASS	END=209799033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	209799034	.	C	.	.	PASS	END=209799066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	209799067	.	G	.	.	PASS	END=209799099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	209799100	.	C	.	.	PASS	END=209799222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	209799223	.	G	.	.	PASS	END=209799252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	209799253	.	A	G	2324.03	PASS	BaseQRankSum=2.665;DP=190;Dels=0.00;FS=4.819;HRun=0;HaplotypeScore=5.7343;MQ=60;MQ0=0;MQRankSum=-0.195;QD=12.23;ReadPosRankSum=1.447;SB=-1001.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:99,91:190:99:2354,0,2624:60:99:0.479
chr1	209799254	.	C	.	.	PASS	END=209799271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	209799272	.	T	.	.	PASS	END=209799302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	209799303	.	G	.	.	PASS	END=209799337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	209799338	.	G	.	.	PASS	END=209799355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	209799356	.	A	.	.	PASS	END=209799378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	209799379	.	C	.	.	PASS	END=209799406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:96:60
chr1	209799407	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:63:60
chr1	209799408	.	C	.	.	PASS	END=209799422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:93:60
chr1	209800161	.	C	.	.	PASS	END=209800179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	209800180	.	G	.	.	PASS	END=209800202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	209800203	.	A	.	.	PASS	END=209800236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	209800237	.	A	.	.	PASS	END=209800335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:247:99:60
chr1	209800336	.	A	.	.	PASS	END=209800374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	209800677	.	T	.	.	PASS	END=209800678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:63:60
chr1	209800679	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:39:60
chr1	209800680	.	G	.	.	PASS	END=209800681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	209800682	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:39:60
chr1	209800683	.	C	.	.	PASS	END=209800692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	209800693	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:33:60
chr1	209800694	.	C	.	.	PASS	END=209800696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	209800697	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:25:60
chr1	209800698	.	G	.	.	PASS	END=209800709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	209800710	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:33:12:60
chr1	209800711	.	C	.	.	PASS	END=209800712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	209800713	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:37:15:60
chr1	209800714	.	C	.	.	PASS	END=209800728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	209800729	.	T	.	.	PASS	END=209800751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	209800752	.	G	.	.	PASS	END=209800776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	209800777	.	T	.	.	PASS	END=209800805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	209800806	.	G	.	.	PASS	END=209800892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	209800893	.	C	.	.	PASS	END=209800934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	209800935	.	A	.	.	PASS	END=209800953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	209800954	.	A	.	.	PASS	END=209800975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	209801329	.	T	.	.	PASS	END=209801344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	209801345	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr1	209801346	.	C	.	.	PASS	END=209801373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr1	209801374	.	A	.	.	PASS	END=209801409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:88:60
chr1	209801410	.	G	.	.	PASS	END=209801471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	209801472	.	C	.	.	PASS	END=209801497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	209801498	.	A	.	.	PASS	END=209801499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:89:60
chr1	209801500	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:72:60
chr1	209801501	.	C	.	.	PASS	END=209801529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	209801530	.	C	.	.	PASS	END=209801552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:66:60
chr1	209801553	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:33:60
chr1	209801554	.	C	.	.	PASS	END=209801564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	209801565	.	G	.	.	PASS	END=209801567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	209801568	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:27:60
chr1	209801569	.	A	.	.	PASS	END=209801578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	209801579	.	A	.	.	PASS	END=209801586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	209803031	.	A	.	.	PASS	END=209803047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	209803048	.	A	.	.	PASS	END=209803062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	209803063	.	C	.	.	PASS	END=209803120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	209803121	.	T	.	.	PASS	END=209803198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	209803199	.	A	.	.	PASS	END=209803224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	209803225	.	G	.	.	PASS	END=209803251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	209803252	.	T	.	.	PASS	END=209803279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:82:60
chr1	209803280	.	G	.	.	PASS	END=209803290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	209803291	.	G	.	.	PASS	END=209803305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	209803306	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:48:60
chr1	209803307	.	A	.	.	PASS	END=209803321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	209803881	.	C	.	.	PASS	END=209803887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	209803888	.	A	.	.	PASS	END=209803897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	209803898	.	G	.	.	PASS	END=209803904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	209803905	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:60
chr1	209803906	.	G	.	.	PASS	END=209803920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	209803921	.	C	.	.	PASS	END=209803922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	209803923	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:24:60
chr1	209803924	.	A	.	.	PASS	END=209803926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	209803927	.	C	.	.	PASS	END=209803928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	209803929	.	C	.	.	PASS	END=209803964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	209803965	.	C	.	.	PASS	END=209803995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	209803996	.	T	.	.	PASS	END=209804019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	209804020	.	G	.	.	PASS	END=209804079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	209804080	.	C	.	.	PASS	END=209804094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	209804095	.	G	A	767.38	PASS	BaseQRankSum=1.524;DP=71;Dels=0.00;FS=2.155;HRun=0;HaplotypeScore=15.2035;MQ=60;MQ0=0;MQRankSum=-0.834;QD=10.81;ReadPosRankSum=0.270;SB=-332.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,36:71:99:797,0,900:60:99:0.507
chr1	209804096	.	T	.	.	PASS	END=209804131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	209805877	.	T	.	.	PASS	END=209805887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr1	209805888	.	C	.	.	PASS	END=209805896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	209805897	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr1	209805898	.	T	.	.	PASS	END=209805912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	209805913	.	A	.	.	PASS	END=209805924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	209805925	.	T	.	.	PASS	END=209805944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	209805945	.	G	.	.	PASS	END=209805980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	209805981	.	C	.	.	PASS	END=209806128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	209806129	.	G	.	.	PASS	END=209806159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	209806160	.	A	.	.	PASS	END=209806172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	209806364	.	G	.	.	PASS	END=209806401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	209806402	.	T	.	.	PASS	END=209806514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	209806515	.	G	.	.	PASS	END=209806529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	209807741	.	G	.	.	PASS	END=209807758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	209807759	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:24:60
chr1	209807760	.	C	.	.	PASS	END=209807775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	209807776	.	G	.	.	PASS	END=209807779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	209807780	.	C	.	.	PASS	END=209807786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	209807787	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:45:60
chr1	209807788	.	C	.	.	PASS	END=209807794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	209807795	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:54:60
chr1	209807796	.	C	.	.	PASS	END=209807807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	209807808	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:69:60
chr1	209807809	.	G	.	.	PASS	END=209807816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	209807817	.	G	.	.	PASS	END=209807839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	209807840	.	C	.	.	PASS	END=209807862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	209807863	.	G	.	.	PASS	END=209807969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	209807970	.	G	.	.	PASS	END=209807994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	209807995	.	G	.	.	PASS	END=209808011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	209808012	.	G	.	.	PASS	END=209808019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	209808020	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:57:60
chr1	209808021	.	G	.	.	PASS	END=209808025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	209808026	.	T	.	.	PASS	END=209808027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	209808028	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:63:60
chr1	209808029	.	G	.	.	PASS	END=209808034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	209811202	.	A	.	.	PASS	END=209811213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	209811214	.	A	.	.	PASS	END=209811235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	209811236	.	A	.	.	PASS	END=209811320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	209811321	.	T	.	.	PASS	END=209811363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	209811364	.	T	.	.	PASS	END=209811377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:60
chr1	209811828	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:93:60
chr1	209811829	.	A	T	348.62	PASS	BaseQRankSum=0.744;DP=41;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=4.7771;MQ=60;MQ0=0;MQRankSum=-0.041;QD=8.50;ReadPosRankSum=0.690;SB=-93.70	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,15:41:99:379,0,705:60:99:0.366
chr1	209811830	.	T	.	.	PASS	END=209811849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	209811850	.	T	.	.	PASS	END=209811864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	209811865	.	T	.	.	PASS	END=209811885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	209811886	.	T	G	1091.55	PASS	BaseQRankSum=-0.868;DP=78;Dels=0.00;FS=4.638;HRun=1;HaplotypeScore=5.8398;MQ=60;MQ0=0;MQRankSum=0.102;QD=13.99;ReadPosRankSum=0.123;SB=-471.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:31,47:78:99:1122,0,704:60:99:0.603
chr1	209811887	.	G	.	.	PASS	END=209811929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	209811930	.	C	.	.	PASS	END=209811988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	209811989	.	T	.	.	PASS	END=209812013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	209812014	.	A	.	.	PASS	END=209812044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	209823258	.	C	.	.	PASS	END=209823264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	209823265	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:69:60
chr1	209823266	.	C	.	.	PASS	END=209823281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	209823282	.	C	.	.	PASS	END=209823309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	209823310	.	T	.	.	PASS	END=209823336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	209823337	.	G	.	.	PASS	END=209823353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	209823354	.	G	A	1446.33	PASS	BaseQRankSum=4.236;DP=122;Dels=0.00;FS=3.567;HRun=1;HaplotypeScore=20.8518;MQ=60;MQ0=0;MQRankSum=1.896;QD=11.86;ReadPosRankSum=1.160;SB=-994.16	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:58,63:122:99:1476,0,1173:60:99:0.521
chr1	209823355	.	G	.	.	PASS	END=209823427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	209823428	.	A	.	.	PASS	END=209823459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	209823460	.	A	.	.	PASS	END=209823485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	209823486	.	T	.	.	PASS	END=209823491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	209823492	.	A	.	.	PASS	END=209823503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	209823504	.	A	.	.	PASS	END=209823507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:60
chr1	209823508	.	G	.	.	PASS	END=209823514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	209824211	.	T	.	.	PASS	END=209824221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	209824222	.	C	.	.	PASS	END=209824242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	209824243	.	G	.	.	PASS	END=209824345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	209849028	.	A	.	.	LowGQX	END=209849161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209849162	.	A	.	.	LowGQX	END=209849228	GT	./.
chr1	209849229	.	A	.	.	LowGQX	END=209849267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209849268	.	T	.	.	LowGQX	.	GT	./.
chr1	209849269	.	G	.	.	LowGQX	END=209849343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209878237	.	T	.	.	PASS	END=209878252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	209878253	.	G	.	.	PASS	END=209878290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	209878291	.	G	.	.	PASS	END=209878383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	209878384	.	C	.	.	PASS	END=209878388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	209878389	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:63:60
chr1	209878390	.	G	.	.	PASS	END=209878426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	209879105	.	A	.	.	PASS	END=209879137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:59
chr1	209879138	.	C	.	.	PASS	END=209879149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	209879150	.	C	.	.	PASS	END=209879195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	209879196	.	C	.	.	PASS	END=209879275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	209879276	.	C	.	.	PASS	END=209879300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	209879301	.	C	.	.	PASS	END=209879317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	209879318	.	C	.	.	PASS	END=209879328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	209879329	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:72:60
chr1	209879330	.	A	.	.	PASS	END=209879337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	209880003	.	C	.	.	LowGQX	END=209880007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	209880008	.	A	.	.	LowGQX	END=209880010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	209880011	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	209880012	.	T	.	.	LowGQX	END=209880014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	209880015	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	209880016	.	C	.	.	LowGQX	END=209880017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	209880018	.	G	.	.	PASS	END=209880021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	209880022	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	209880023	.	G	.	.	PASS	END=209880029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	209880030	.	G	.	.	PASS	END=209880033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	209880034	.	T	.	.	PASS	END=209880035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:59
chr1	209880036	.	T	.	.	PASS	END=209880039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:59
chr1	209880040	.	C	.	.	PASS	END=209880047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:59
chr1	209880048	.	C	.	.	PASS	END=209880060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:59
chr1	209880061	.	C	.	.	PASS	END=209880082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:59
chr1	209880083	.	A	.	.	PASS	END=209880089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	209880090	.	G	.	.	PASS	END=209880108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	209880109	.	C	.	.	PASS	END=209880216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	209880216	.	C	CA	2029.90	PASS	BaseQRankSum=3.865;DP=108;FS=0.000;HRun=2;HaplotypeScore=244.6943;MQ=60;MQ0=0;MQRankSum=0.042;QD=18.80;ReadPosRankSum=-0.740;SB=-670.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:48,58:108:99:2069,0,1550:60:99:0.547
chr1	209880237	.	T	.	.	PASS	END=209880258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	209880259	.	T	G	1158.08	PASS	BaseQRankSum=0.112;DP=86;Dels=0.00;FS=2.982;HRun=1;HaplotypeScore=4.8298;MQ=60;MQ0=0;MQRankSum=0.747;QD=13.47;ReadPosRankSum=1.964;SB=-484.04	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,42:86:99:1188,0,1092:60:99:0.500
chr1	209880260	.	G	.	.	PASS	END=209880289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	209880290	.	G	.	.	PASS	END=209880351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	209880352	.	T	.	.	PASS	END=209880409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	209880410	.	G	.	.	PASS	END=209880434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	209880435	.	A	.	.	PASS	END=209880447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	209880448	.	C	.	.	PASS	END=209880474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	209880475	.	T	.	.	PASS	END=209880495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:89:60
chr1	209880496	.	T	.	.	PASS	END=209880500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	209880501	.	G	.	.	PASS	END=209880504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	209880505	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:60
chr1	209880506	.	A	.	.	PASS	END=209880507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	209880508	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:33:12:60
chr1	209880508	.	GA	G	272.51	SB	BaseQRankSum=-2.693;DP=33;FS=0.000;HRun=11;HaplotypeScore=109.5520;MQ=60;MQ0=0;MQRankSum=-0.510;QD=8.26;ReadPosRankSum=0.170;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:17,13:33:99:312,0,249:60:99:0.433
chr1	209880509	.	A	.	75.14	PASS	DP=31;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:17:17:45.15:60:45
chr1	209880510	.	A	.	.	PASS	END=209880524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	209905730	.	G	.	.	PASS	END=209905733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	209905734	.	G	C	680.08	PASS	BaseQRankSum=0.368;DP=65;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=-0.890;QD=10.46;ReadPosRankSum=0.529;SB=-39.20	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:39,26:65:99:710,0,1181:60:99:0.400
chr1	209905735	.	T	.	.	PASS	END=209905755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	209905756	.	C	.	.	PASS	END=209905786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	209905787	.	T	.	.	PASS	END=209905907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	209905908	.	T	.	.	PASS	END=209905937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	209905938	.	T	.	.	PASS	END=209905965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	209907598	.	A	.	.	PASS	END=209907606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	209907607	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:42:60
chr1	209907608	.	T	.	.	PASS	END=209907620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	209907621	.	A	.	.	PASS	END=209907623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	209907624	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:60
chr1	209907625	.	T	.	.	PASS	END=209907631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	209907632	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:57:60
chr1	209907633	.	C	.	.	PASS	END=209907667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	209907668	.	T	.	.	PASS	END=209907693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	209907694	.	C	.	.	PASS	END=209907730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	209907731	.	G	.	.	PASS	END=209907769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	209907770	.	A	.	.	PASS	END=209907878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	209907879	.	G	.	.	PASS	END=209907905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	209907906	.	C	.	.	PASS	END=209907917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	209933383	.	T	.	.	LowGQX	END=209933729	GT	./.
chr1	209935858	.	A	.	.	LowGQX	END=209935991	GT	./.
chr1	209935992	.	C	.	.	LowGQX	END=209936009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209936137	.	A	.	.	LowGQX	END=209936236	GT	./.
chr1	209936376	.	G	.	.	LowGQX	END=209936397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209936398	.	T	.	.	LowGQX	.	GT	./.
chr1	209936399	.	T	.	.	LowGQX	END=209936408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209936409	.	C	.	.	LowGQX	END=209936410	GT	./.
chr1	209936411	.	A	.	.	LowGQX	END=209936442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209936443	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	209936444	.	A	.	.	LowGQX	END=209936463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	209936464	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	209936465	.	C	.	.	LowGQX	END=209936468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209936469	.	T	.	.	LowGQX	.	GT	./.
chr1	209936470	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209936471	.	A	.	.	LowGQX	.	GT	./.
chr1	209936472	.	G	.	.	LowGQX	END=209936475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209936673	.	C	.	.	LowGQX	END=209936772	GT	./.
chr1	209936835	.	A	.	.	LowGQX	END=209936934	GT	./.
chr1	209946221	.	A	.	.	LowGQX	END=209946378	GT	./.
chr1	209948692	.	A	.	.	LowGQX	END=209948694	GT	./.
chr1	209948695	.	A	.	.	LowGQX	END=209948710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209948711	.	A	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	209948712	.	A	.	.	LowGQX	END=209948867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209948868	.	A	.	.	LowGQX	END=209948918	GT	./.
chr1	209948919	.	C	.	.	LowGQX	END=209948923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209948924	.	T	.	.	LowGQX	.	GT	./.
chr1	209948925	.	C	.	.	LowGQX	END=209948932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209948933	.	A	.	.	LowGQX	.	GT	./.
chr1	209948942	.	A	.	.	LowGQX	END=209948959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209948960	.	C	.	.	LowGQX	.	GT	./.
chr1	209948961	.	A	.	.	LowGQX	END=209948962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209948963	.	A	.	.	LowGQX	END=209948964	GT	./.
chr1	209948965	.	C	.	.	LowGQX	END=209948979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209948980	.	T	.	.	LowGQX	.	GT	./.
chr1	209948981	.	G	.	.	LowGQX	END=209948984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209948985	.	G	.	.	LowGQX	.	GT	./.
chr1	209948986	.	A	.	.	LowGQX	END=209949007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209949008	.	A	.	.	LowGQX	.	GT	./.
chr1	209949009	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209949010	.	G	.	.	LowGQX	END=209949011	GT	./.
chr1	209949012	.	C	.	.	LowGQX	END=209949044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209949045	.	G	.	.	LowGQX	.	GT	./.
chr1	209949046	.	G	.	.	LowGQX	END=209949053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209949054	.	A	.	.	LowGQX	.	GT	./.
chr1	209949055	.	C	.	.	LowGQX	END=209949067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	209949068	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	209949069	.	G	.	.	LowGQX	END=209949070	GT	./.
chr1	209949071	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209949072	.	C	.	.	LowGQX	.	GT	./.
chr1	209949073	.	A	.	.	LowGQX	END=209949074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209949075	.	A	.	.	LowGQX	END=209949076	GT	./.
chr1	209949077	.	T	.	.	LowGQX	END=209949078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209949079	.	C	.	.	LowGQX	END=209949080	GT	./.
chr1	209949081	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209949082	.	G	.	.	LowGQX	.	GT	./.
chr1	209949083	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209950695	.	A	.	.	LowGQX	END=209950834	GT	./.
chr1	209951438	.	G	.	.	LowGQX	END=209951446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	209951447	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	209951448	.	A	.	.	LowGQX	END=209951466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	209951467	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	209951468	.	G	.	.	LowGQX	END=209951537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	209952654	.	C	.	.	LowGQX	END=209952836	GT	./.
chr1	209953813	.	A	.	.	LowGQX	END=209953953	GT	./.
chr1	209954688	.	A	.	.	LowGQX	END=209954805	GT	./.
chr1	209955398	.	C	.	.	LowGQX	END=209955407	GT	./.
chr1	209955408	.	G	.	.	LowGQX	END=209955427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209955428	.	C	.	.	LowGQX	.	GT	./.
chr1	209955429	.	T	.	.	LowGQX	END=209955497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	209956168	.	A	.	.	LowGQX	END=209956981	GT	./.
chr1	209961714	.	T	.	.	PASS	END=209961715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	209961716	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:24:60
chr1	209961717	.	A	.	.	PASS	END=209961718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	209961719	.	A	.	.	PASS	END=209961720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	209961721	.	G	.	.	PASS	END=209961723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:81:60
chr1	209961724	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:42:60
chr1	209961725	.	A	.	.	PASS	END=209961735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	209961736	.	A	.	.	PASS	END=209961778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	209961779	.	G	.	.	PASS	END=209961790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	209961791	.	G	.	.	PASS	END=209961801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	209961802	.	G	.	.	PASS	END=209961816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	209961817	.	G	.	.	PASS	END=209961838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	209961839	.	G	.	.	PASS	END=209961856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	209961857	.	G	.	.	PASS	END=209961966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	209961967	.	A	.	.	PASS	END=209961994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	209961995	.	C	.	.	PASS	END=209962005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	209962006	.	A	.	.	PASS	END=209962019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	209962020	.	T	.	.	PASS	END=209962038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	209962039	.	T	.	.	PASS	END=209962040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	209962949	.	G	.	.	PASS	END=209962991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	209962992	.	A	.	.	PASS	END=209963079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	209963080	.	T	.	.	PASS	END=209963104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	209963105	.	C	.	.	PASS	END=209963135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	209963136	.	G	.	.	PASS	END=209963160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	209963161	.	A	.	.	PASS	END=209963178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	209963179	.	C	.	.	PASS	END=209963181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	209963789	.	T	.	.	PASS	END=209963802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	209963803	.	G	A	94.16	SB	BaseQRankSum=-0.896;DP=12;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=-0.278;QD=7.85;ReadPosRankSum=1.034;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:7,4:12:99:124,0,242:60:94:0.364
chr1	209963804	.	T	.	.	PASS	END=209963838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	209963839	.	C	.	.	PASS	END=209963872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	209963873	.	C	.	.	PASS	END=209963893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	209963894	.	G	.	.	PASS	END=209963895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	209963896	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:24:60
chr1	209963897	.	T	.	.	PASS	END=209963923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	209963924	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:96:60
chr1	209963925	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:62:60
chr1	209963926	.	C	.	.	PASS	END=209963933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	209963934	.	G	.	.	PASS	END=209963947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	209963948	.	G	.	.	PASS	END=209963990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	209963991	.	G	.	.	PASS	END=209964017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	209964018	.	C	.	.	PASS	END=209964080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	209964081	.	C	.	.	PASS	END=209964105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:84:60
chr1	209964106	.	A	.	.	PASS	END=209964145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	209964146	.	A	.	.	PASS	END=209964155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	209964156	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:63:60
chr1	209964157	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:48:60
chr1	209964158	.	C	.	.	PASS	END=209964169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	209964170	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:60:60
chr1	209964171	.	C	.	.	PASS	END=209964176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	209964177	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:36:60
chr1	209964178	.	A	.	.	PASS	END=209964191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	209964192	.	C	.	.	PASS	END=209964194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	209964195	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:45:60
chr1	209964196	.	T	.	.	PASS	END=209964199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	209964200	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:27:60
chr1	209964201	.	A	.	.	PASS	END=209964216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	209964217	.	A	.	.	PASS	END=209964218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	209964219	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:33:60
chr1	209964220	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:45:60
chr1	209964221	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:60:60
chr1	209964222	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:27:60
chr1	209964223	.	A	.	.	PASS	END=209964239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	209964240	.	G	.	.	PASS	END=209964247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	209964248	.	T	.	.	PASS	END=209964259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	209964260	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:36:60
chr1	209964261	.	C	.	.	PASS	END=209964268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	209964269	.	A	.	.	PASS	END=209964273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	209964274	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	209964275	.	C	.	.	PASS	END=209964278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	209964279	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	209964280	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	209964281	.	G	.	.	LowGQX	END=209964283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	209965563	.	A	.	.	PASS	END=209965584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	209965585	.	C	.	.	PASS	END=209965586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	209965587	.	G	C	452.50	PASS	BaseQRankSum=2.178;DP=39;Dels=0.00;FS=1.356;HRun=2;HaplotypeScore=5.6815;MQ=60;MQ0=0;MQRankSum=-0.804;QD=11.60;ReadPosRankSum=-0.044;SB=-257.17	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:20,18:39:99:482,0,465:60:99:0.474
chr1	209965588	.	A	.	.	PASS	END=209965612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	209965613	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:54:60
chr1	209965614	.	T	.	.	PASS	END=209965642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	209965643	.	G	.	.	PASS	END=209965656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	209965657	.	C	.	.	PASS	END=209965738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:94:60
chr1	209965739	.	C	.	.	PASS	END=209965761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:93:60
chr1	209965762	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:64:60
chr1	209965763	.	A	.	.	PASS	END=209965795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	209965796	.	C	.	.	PASS	END=209965806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	209965807	.	A	.	.	PASS	END=209965811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	209965812	.	A	.	.	PASS	END=209965822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	209965823	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:48:60
chr1	209968584	.	A	.	.	PASS	END=209968587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	209968588	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:42:60
chr1	209968589	.	C	.	.	PASS	END=209968598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	209968599	.	C	.	.	PASS	END=209968608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	209968609	.	C	.	.	PASS	END=209968641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	209968642	.	G	.	.	PASS	END=209968677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	209968678	.	G	.	.	PASS	END=209968683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	209968684	.	C	A	1321.50	PASS	BaseQRankSum=-0.228;DP=115;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.3630;MQ=60;MQ0=0;MQRankSum=-0.767;QD=11.49;ReadPosRankSum=-0.480;SB=-695.33	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:52,63:115:99:1351,0,1183:60:99:0.548
chr1	209968685	.	G	.	.	PASS	END=209968754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	209968755	.	C	.	.	PASS	END=209968794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	209968795	.	C	.	.	PASS	END=209968814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	209969642	.	G	.	.	PASS	END=209969667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	209969668	.	T	.	.	PASS	END=209969695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	209969696	.	G	.	.	PASS	END=209969726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	209969727	.	G	.	.	PASS	END=209969821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	209969822	.	G	.	.	PASS	END=209969854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	209969855	.	C	.	.	PASS	END=209969876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	209969877	.	C	.	.	PASS	END=209969888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	209969889	.	A	.	.	PASS	END=209969898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	209969899	.	T	.	.	PASS	END=209969901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	209969902	.	G	C	488.78	PASS	BaseQRankSum=-0.850;DP=35;Dels=0.00;FS=6.236;HRun=0;HaplotypeScore=6.6789;MQ=60;MQ0=0;MQRankSum=-0.417;QD=13.97;ReadPosRankSum=0.783;SB=-101.13	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:15,20:35:99:519,0,452:60:99:0.571
chr1	209969903	.	A	.	.	PASS	END=209969917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	209969918	.	T	.	.	PASS	END=209969931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	209969932	.	G	.	.	PASS	END=209969940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	209969941	.	C	.	.	PASS	END=209969946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	209969947	.	A	.	.	PASS	END=209969948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	209974534	.	A	.	.	PASS	END=209974549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:57
chr1	209974550	.	T	.	.	PASS	END=209974586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	209974587	.	T	.	.	PASS	END=209974611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:96:60
chr1	209974612	.	T	.	.	PASS	END=209974686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	209974687	.	A	.	.	PASS	END=209974696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	209974697	.	C	.	.	PASS	END=209974710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	209974711	.	G	.	.	PASS	END=209974712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:69:60
chr1	209974713	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:51:60
chr1	209974714	.	C	.	.	PASS	END=209974731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	209974732	.	C	.	.	PASS	END=209974739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	209974740	.	T	.	.	PASS	END=209974747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	209974748	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:1:60
chr1	209974749	.	G	.	.	PASS	END=209974755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	209974756	.	C	.	.	PASS	END=209974762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	209974763	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	209974764	.	G	.	.	LowGQX	END=209974766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	209974767	.	G	.	6.76	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.02:60:0
chr1	209974768	.	G	.	.	LowGQX	END=209974770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	209974771	.	T	.	.	LowGQX	.	GT	./.
chr1	209974772	.	C	.	.	LowGQX	END=209974776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:53
chr1	209974777	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:53
chr1	209974778	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:53
chr1	209974779	.	A	.	.	LowGQX	END=209974780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:53
chr1	209974781	.	A	.	.	LowGQX	END=209974782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:53
chr1	209974783	.	A	.	.	LowGQX	END=209974788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:51
chr1	209974789	.	A	.	.	LowGQX	END=209974790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:51
chr1	209974791	.	A	.	5.94	LowGQX	DP=5;MQ=55;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.01:55:0
chr1	209974792	.	G	.	.	LowGQX	END=209974796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:55
chr1	209974797	.	A	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	209974798	.	G	.	.	LowGQX	END=209974802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	209974803	.	A	.	.	LowGQX	END=209974804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	209974805	.	G	.	.	LowGQX	END=209974809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	210001356	.	T	.	.	LowGQX	END=210001566	GT	./.
chr1	210003423	.	T	.	.	LowGQX	END=210003522	GT	./.
chr1	210004146	.	A	.	.	LowGQX	END=210004292	GT	./.
chr1	210004293	.	G	.	.	LowGQX	END=210004373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	210004374	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	210004375	.	T	.	.	LowGQX	END=210004390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	210006517	.	C	.	.	LowGQX	END=210006705	GT	./.
chr1	210008415	.	A	.	.	LowGQX	END=210008514	GT	./.
chr1	210010144	.	A	.	.	LowGQX	END=210010558	GT	./.
chr1	210012150	.	A	.	.	LowGQX	END=210012151	GT	./.
chr1	210012152	.	T	.	.	LowGQX	END=210012153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210012154	.	C	.	.	LowGQX	END=210012155	GT	./.
chr1	210012156	.	C	.	.	LowGQX	END=210012163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210012164	.	A	.	.	LowGQX	.	GT	./.
chr1	210012165	.	G	.	.	LowGQX	END=210012176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210012177	.	C	.	.	LowGQX	.	GT	./.
chr1	210012178	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210012179	.	C	.	.	LowGQX	.	GT	./.
chr1	210012180	.	T	.	.	LowGQX	END=210012182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210012183	.	C	.	.	LowGQX	.	GT	./.
chr1	210012184	.	T	.	.	LowGQX	END=210012192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210012193	.	T	.	.	LowGQX	END=210012232	GT	./.
chr1	210012233	.	C	.	.	LowGQX	END=210012239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210012240	.	T	.	.	LowGQX	END=210012241	GT	./.
chr1	210012242	.	C	.	.	LowGQX	END=210012262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210012263	.	G	.	.	LowGQX	.	GT	./.
chr1	210012264	.	T	.	.	LowGQX	END=210012287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210012288	.	T	.	.	LowGQX	.	GT	./.
chr1	210012289	.	G	.	.	LowGQX	END=210012293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210012294	.	T	.	.	LowGQX	.	GT	./.
chr1	210012295	.	G	.	.	LowGQX	END=210012296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210012297	.	T	.	.	LowGQX	.	GT	./.
chr1	210012298	.	G	.	.	LowGQX	END=210012303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210012304	.	C	.	.	LowGQX	.	GT	./.
chr1	210012305	.	T	.	.	LowGQX	END=210012382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210012383	.	T	.	.	LowGQX	END=210012475	GT	./.
chr1	210014196	.	A	.	.	LowGQX	END=210014402	GT	./.
chr1	210015608	.	A	.	.	LowGQX	END=210015825	GT	./.
chr1	210015926	.	A	.	.	LowGQX	END=210016042	GT	./.
chr1	210016794	.	A	.	.	LowGQX	END=210016885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210016886	.	C	.	.	LowGQX	.	GT	./.
chr1	210016887	.	G	.	.	LowGQX	END=210016916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210016917	.	G	.	.	LowGQX	.	GT	./.
chr1	210016918	.	A	.	.	LowGQX	END=210016929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210016930	.	C	.	.	LowGQX	END=210016931	GT	./.
chr1	210016932	.	C	.	.	LowGQX	END=210016933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210016934	.	C	.	.	LowGQX	.	GT	./.
chr1	210016935	.	A	.	.	LowGQX	END=210016944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210016945	.	A	.	.	LowGQX	END=210016947	GT	./.
chr1	210016948	.	C	.	.	LowGQX	END=210016957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210016958	.	T	.	.	LowGQX	END=210016959	GT	./.
chr1	210016960	.	G	.	.	LowGQX	END=210016963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210016964	.	C	.	.	LowGQX	END=210016965	GT	./.
chr1	210016966	.	C	.	.	LowGQX	END=210016972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210016973	.	C	.	.	LowGQX	END=210017043	GT	./.
chr1	210024547	.	A	.	.	LowGQX	END=210024721	GT	./.
chr1	210024722	.	G	.	.	LowGQX	END=210024794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210111481	.	G	.	.	LowGQX	END=210111483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	210111484	.	G	.	.	LowGQX	END=210111486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	210111487	.	G	.	.	LowGQX	END=210111488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	210111489	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	210111490	.	C	.	.	LowGQX	END=210111496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	210111497	.	G	.	.	LowGQX	END=210111499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	210111500	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:21:60
chr1	210111501	.	C	.	.	PASS	END=210111509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	210111510	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	210111511	.	G	.	.	PASS	END=210111534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	210111535	.	C	.	.	PASS	END=210111555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	210111556	.	C	.	.	PASS	END=210111591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr1	210111592	.	G	.	.	PASS	END=210111636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:66:60
chr1	210111637	.	A	.	.	PASS	END=210111639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:60:60
chr1	210111640	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:30:60
chr1	210111641	.	C	.	.	PASS	END=210111658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr1	210111659	.	A	.	.	PASS	END=210111668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	210111669	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:45:60
chr1	210111670	.	G	.	.	PASS	END=210111673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	210126003	.	G	.	.	PASS	END=210126056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	210126057	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:73:60
chr1	210126058	.	A	.	.	PASS	END=210126065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	210126066	.	C	.	.	PASS	END=210126152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	210126399	.	G	.	.	PASS	END=210126423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	210126424	.	A	.	.	PASS	END=210126443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	210126444	.	C	.	.	PASS	END=210126557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	210126558	.	G	.	.	PASS	END=210126578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	210126579	.	G	.	.	PASS	END=210126591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	210126592	.	G	.	.	PASS	END=210126604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	210139205	.	G	.	.	PASS	END=210139272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	210139273	.	T	.	.	PASS	END=210139341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	210139342	.	A	.	.	PASS	END=210139358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	210186927	.	G	.	.	PASS	END=210186930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	210186931	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:45:60
chr1	210186932	.	T	.	.	PASS	END=210186963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	210186964	.	T	.	.	PASS	END=210187018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	210187019	.	T	.	.	PASS	END=210187039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	210187040	.	C	.	.	PASS	END=210187096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	210187097	.	C	.	.	PASS	END=210187110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	210187111	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:42:60
chr1	210187112	.	A	.	.	PASS	END=210187116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	210187117	.	A	.	.	PASS	END=210187121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	210187122	.	A	.	.	PASS	END=210187158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	210187159	.	T	.	.	PASS	END=210187168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	210187169	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	210187170	.	T	.	.	LowGQX	END=210187174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	210187175	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:2:60
chr1	210187176	.	C	.	.	LowGQX	END=210187178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	210187179	.	T	.	.	PASS	END=210187180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	210187181	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	210187182	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	210187183	.	T	.	.	LowGQX	END=210187193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	210194333	.	G	.	.	PASS	END=210194384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	210194385	.	T	.	.	PASS	END=210194389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	210194390	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:63:60
chr1	210194391	.	C	.	.	PASS	END=210194409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	210194410	.	C	.	.	PASS	END=210194414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:60
chr1	210194415	.	T	.	.	PASS	END=210194433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	210194434	.	G	.	.	PASS	END=210194446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	210194447	.	G	.	.	PASS	END=210194493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	210194494	.	C	.	.	PASS	END=210194568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	210194569	.	G	.	.	PASS	END=210194584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	210194585	.	C	.	.	PASS	END=210194606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	210194607	.	G	.	.	PASS	END=210194634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	210194635	.	A	.	.	PASS	END=210194644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	210194645	.	T	.	.	PASS	END=210194650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	210267616	.	T	.	.	PASS	END=210267661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	210267662	.	A	.	.	PASS	END=210267685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	210267686	.	G	.	.	PASS	END=210267719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:91:60
chr1	210267720	.	C	.	.	PASS	END=210267746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	210267747	.	C	.	.	PASS	END=210267785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	210267786	.	A	.	.	PASS	END=210267886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	210267887	.	A	.	.	PASS	END=210267893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	210267893	.	TGAA	T	2339.04	PASS	BaseQRankSum=-1.033;DP=110;FS=0.807;HRun=0;HaplotypeScore=64.9837;MQ=60;MQ0=0;MQRankSum=0.689;QD=21.26;ReadPosRankSum=0.044;SB=-837.64	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:63,47:110:99:2378,0,2466:60:99:0.427
chr1	210267894	.	G	.	186.50	PASS	DP=110;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:63:63:99:60:99
chr1	210267895	.	A	.	189.51	PASS	DP=110;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:63:63:99:60:99
chr1	210267896	.	A	.	174.44	PASS	DP=106;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:58:59:99:60:99
chr1	210267897	.	G	.	.	PASS	END=210267915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	210267916	.	G	.	.	PASS	END=210267939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	210267940	.	T	.	.	PASS	END=210267989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	210273306	.	A	.	.	PASS	END=210273355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	210273356	.	G	.	.	PASS	END=210273369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	210273370	.	A	.	.	PASS	END=210273395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	210273396	.	C	.	.	PASS	END=210273429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	210273430	.	C	.	.	PASS	END=210273464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	210273465	.	C	.	.	PASS	END=210273540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	210273541	.	T	.	.	PASS	END=210273623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	210273624	.	T	.	.	PASS	END=210273681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	210273682	.	T	.	.	PASS	END=210273693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	210273694	.	A	.	.	PASS	END=210273696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	210273697	.	G	.	.	PASS	END=210273790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	210273791	.	T	.	.	PASS	END=210273826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	210273827	.	C	.	.	PASS	END=210273838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	210273839	.	T	.	.	PASS	END=210273851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:96:60
chr1	210273852	.	T	.	.	PASS	END=210273857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:96:60
chr1	210329015	.	T	.	.	PASS	END=210329017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	210329018	.	A	.	.	PASS	END=210329044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	210329045	.	A	.	.	PASS	END=210329059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	210329060	.	T	.	.	PASS	END=210329087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	210329088	.	T	.	.	PASS	END=210329117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	210329118	.	C	.	.	PASS	END=210329170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	210329171	.	C	.	.	PASS	END=210329256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:95:60
chr1	210329257	.	T	.	.	PASS	END=210329281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	210329282	.	C	.	.	PASS	END=210329306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	210330175	.	C	.	.	LowGQX	END=210330181	GT	./.
chr1	210330182	.	C	.	.	LowGQX	END=210330274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210332705	.	T	.	.	PASS	END=210332750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	210332751	.	A	.	.	PASS	END=210332790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	210332791	.	C	.	.	PASS	END=210332846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	210332847	.	G	.	.	PASS	END=210332863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	210334023	.	T	.	.	PASS	END=210334077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	210334078	.	A	.	.	PASS	END=210334080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	210334081	.	T	C	1579.56	PASS	BaseQRankSum=-2.311;DP=102;Dels=0.00;FS=4.184;HRun=0;HaplotypeScore=8.5223;MQ=60;MQ0=0;MQRankSum=-0.061;QD=15.49;ReadPosRankSum=-0.224;SB=-254.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:43,59:102:99:1610,0,1248:60:99:0.578
chr1	210334082	.	G	.	.	PASS	END=210334098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	210334099	.	G	.	.	PASS	END=210334142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	210334143	.	G	.	.	PASS	END=210334162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	210334163	.	G	.	.	PASS	END=210334217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr1	210334218	.	C	.	.	PASS	END=210334232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:315:99:60
chr1	210334233	.	T	.	.	PASS	END=210334378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:381:99:60
chr1	210334379	.	G	.	.	PASS	END=210334525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:292:99:60
chr1	210334526	.	T	.	.	PASS	END=210334561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	210334562	.	A	.	.	PASS	END=210334756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	210334757	.	T	.	.	PASS	END=210334804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	210334805	.	G	.	.	PASS	END=210334852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	210334853	.	C	.	.	PASS	END=210335083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:269:99:60
chr1	210335084	.	A	.	.	PASS	END=210335138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:60
chr1	210335139	.	C	.	.	PASS	END=210335254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	210335255	.	T	.	.	PASS	END=210335287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	210335288	.	A	.	.	PASS	END=210335369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	210335370	.	A	.	.	PASS	END=210335511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	210335512	.	T	.	.	PASS	END=210335619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	210335620	.	T	.	.	PASS	END=210335667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	210335668	.	T	.	.	PASS	END=210335807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	210335808	.	T	.	.	PASS	END=210335836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	210335837	.	T	.	.	PASS	END=210335848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	210335849	.	C	.	.	PASS	END=210335931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	210335932	.	C	.	.	PASS	END=210336065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	210336066	.	C	.	.	PASS	END=210336142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	210336143	.	A	.	.	PASS	END=210336212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	210336213	.	T	.	.	PASS	END=210336316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	210336317	.	A	.	.	PASS	END=210336458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	210336459	.	G	.	.	PASS	END=210336507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	210336508	.	A	.	.	PASS	END=210336541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	210336542	.	G	.	.	PASS	END=210336644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	210336645	.	T	.	.	PASS	END=210336673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr1	210336674	.	A	.	.	PASS	END=210336797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:60
chr1	210336798	.	T	.	.	PASS	END=210336866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	210336867	.	A	.	.	PASS	END=210337006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:257:99:60
chr1	210337007	.	A	.	.	PASS	END=210337042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:322:99:60
chr1	210337043	.	A	G	10436.40	PASS	BaseQRankSum=-0.412;DP=328;Dels=0.00;FS=3.610;HRun=0;HaplotypeScore=14.2990;MQ=60;MQ0=0;MQRankSum=0.686;QD=31.82;ReadPosRankSum=-0.877;SB=-5166.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,327:328:99:10436,764,0:60:99:0.997
chr1	210337044	.	T	.	.	PASS	END=210337146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:297:99:60
chr1	210337147	.	C	.	.	PASS	END=210337232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr1	210337233	.	G	.	.	PASS	END=210337249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	210337250	.	A	.	.	PASS	END=210337283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	210337284	.	T	.	.	PASS	END=210337294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	210337295	.	T	.	.	PASS	END=210337451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	210337452	.	A	.	.	PASS	END=210337482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	210337483	.	T	.	.	PASS	END=210337509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	210337510	.	C	.	.	PASS	END=210337525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	210337526	.	A	.	.	PASS	END=210337529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:78:60
chr1	210337530	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:42:60
chr1	210337531	.	A	.	.	PASS	END=210337560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	210337561	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:27:60
chr1	210337562	.	T	.	.	PASS	END=210337565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	210337566	.	T	.	.	PASS	END=210337577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	210337578	.	G	.	.	PASS	END=210337582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	210337583	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	210337584	.	T	.	.	LowGQX	END=210337588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	210337589	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	210337590	.	A	.	.	LowGQX	END=210337602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	210337603	.	T	.	.	LowGQX	END=210337608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	210337609	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	210337610	.	A	.	.	LowGQX	END=210337618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	210337619	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	210337620	.	T	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	210337621	.	G	.	.	LowGQX	END=210337626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	210337627	.	C	.	6.76	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.02:60:0
chr1	210337628	.	A	.	.	LowGQX	END=210337633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	210405065	.	T	.	.	LowGQX	END=210405164	GT	./.
chr1	210406979	.	C	.	.	LowGQX	END=210406992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210406993	.	T	.	.	LowGQX	.	GT	./.
chr1	210406994	.	G	.	.	LowGQX	END=210407020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210407021	.	T	.	.	LowGQX	END=210407288	GT	./.
chr1	210411284	.	T	.	.	LowGQX	END=210411329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	210411330	.	A	.	.	LowGQX	END=210411482	GT	./.
chr1	210412776	.	T	.	.	LowGQX	END=210412955	GT	./.
chr1	210414901	.	A	.	.	LowGQX	END=210415280	GT	./.
chr1	210415281	.	T	.	.	LowGQX	END=210415328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	210415329	.	T	.	.	LowGQX	END=210415684	GT	./.
chr1	210502352	.	C	.	.	LowGQX	.	GT	./.
chr1	210502353	.	C	.	.	LowGQX	END=210502354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210502355	.	A	.	.	LowGQX	END=210502357	GT	./.
chr1	210502358	.	T	.	.	LowGQX	END=210502363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210502364	.	G	.	.	LowGQX	.	GT	./.
chr1	210502365	.	G	.	.	LowGQX	END=210502380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210502381	.	A	.	.	LowGQX	.	GT	./.
chr1	210502382	.	A	.	.	LowGQX	END=210502392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210502393	.	G	.	.	LowGQX	.	GT	./.
chr1	210502394	.	G	.	.	LowGQX	END=210502403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210502404	.	G	.	.	LowGQX	.	GT	./.
chr1	210502405	.	C	.	.	LowGQX	END=210502408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210502409	.	C	.	.	LowGQX	.	GT	./.
chr1	210502410	.	G	.	.	LowGQX	END=210502433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210502434	.	C	.	.	LowGQX	END=210502474	GT	./.
chr1	210502475	.	C	.	.	LowGQX	END=210502489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210502490	.	T	.	.	LowGQX	.	GT	./.
chr1	210502491	.	G	.	.	LowGQX	END=210502493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210502494	.	G	.	.	LowGQX	.	GT	./.
chr1	210502495	.	A	.	.	LowGQX	END=210502502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210522316	.	A	.	.	LowGQX	END=210522415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210536180	.	T	.	.	LowGQX	END=210536279	GT	./.
chr1	210560810	.	A	.	.	LowGQX	END=210560927	GT	./.
chr1	210573810	.	A	.	.	LowGQX	END=210574008	GT	./.
chr1	210577806	.	A	.	.	LowGQX	END=210578025	GT	./.
chr1	210591476	.	A	.	.	LowGQX	END=210591671	GT	./.
chr1	210637847	.	A	.	.	LowGQX	END=210637869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210637870	.	T	.	.	LowGQX	.	GT	./.
chr1	210637871	.	G	.	.	LowGQX	END=210637872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210637873	.	T	.	.	LowGQX	.	GT	./.
chr1	210637874	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210637875	.	T	.	.	LowGQX	.	GT	./.
chr1	210637876	.	T	.	.	LowGQX	END=210637889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210637890	.	T	.	.	LowGQX	.	GT	./.
chr1	210637891	.	A	.	.	LowGQX	END=210637905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210637906	.	G	.	.	LowGQX	.	GT	./.
chr1	210637907	.	C	.	.	LowGQX	END=210637914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210637915	.	C	.	.	LowGQX	END=210637991	GT	./.
chr1	210637992	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210637993	.	T	.	.	LowGQX	.	GT	./.
chr1	210637994	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210637995	.	T	.	.	LowGQX	.	GT	./.
chr1	210637996	.	G	.	.	LowGQX	END=210637997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210637998	.	A	.	.	LowGQX	.	GT	./.
chr1	210637999	.	G	.	.	LowGQX	END=210638001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210686405	.	A	.	.	LowGQX	END=210686564	GT	./.
chr1	210761240	.	A	.	.	LowGQX	END=210761445	GT	./.
chr1	210796868	.	A	.	.	LowGQX	END=210796929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210796930	.	A	.	.	LowGQX	.	GT	./.
chr1	210796931	.	C	.	.	LowGQX	END=210796948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210796949	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	210796950	.	C	.	.	LowGQX	END=210796954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210796955	.	T	.	.	LowGQX	END=210797016	GT	./.
chr1	210804340	.	G	.	.	LowGQX	END=210804507	GT	./.
chr1	210847626	.	G	.	.	LowGQX	END=210847711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210847712	.	C	.	.	LowGQX	END=210847725	GT	./.
chr1	210856621	.	T	.	.	LowGQX	END=210856769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210856770	.	G	.	.	LowGQX	.	GT	./.
chr1	210856771	.	T	.	.	LowGQX	END=210856843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210856844	.	T	.	.	LowGQX	END=210857162	GT	./.
chr1	210857163	.	G	.	.	LowGQX	END=210857282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	210857283	.	A	.	.	LowGQX	END=210857482	GT	./.
chr1	210948688	.	A	.	.	LowGQX	END=210948888	GT	./.
chr1	210970848	.	A	.	.	LowGQX	END=210970851	GT	./.
chr1	210970852	.	A	.	.	LowGQX	END=210971008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	210971009	.	T	.	.	LowGQX	END=210971104	GT	./.
chr1	210977307	.	A	.	.	LowGQX	END=210977510	GT	./.
chr1	211092980	.	A	.	.	LowGQX	END=211092995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211092996	.	A	.	.	LowGQX	END=211093413	GT	./.
chr1	211192123	.	A	.	.	LowGQX	END=211192394	GT	./.
chr1	211192395	.	A	.	.	LowGQX	END=211192574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211192575	.	G	.	.	LowGQX	END=211192600	GT	./.
chr1	211256120	.	A	.	.	LowGQX	END=211256181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211256182	.	C	.	.	LowGQX	.	GT	./.
chr1	211256183	.	T	.	.	LowGQX	END=211256204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	211256205	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	211256206	.	C	.	.	LowGQX	END=211256211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211256212	.	T	.	.	LowGQX	.	GT	./.
chr1	211256213	.	C	.	.	LowGQX	END=211256216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211256217	.	T	.	.	LowGQX	.	GT	./.
chr1	211256218	.	C	.	.	LowGQX	END=211256236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211256237	.	C	.	.	LowGQX	.	GT	./.
chr1	211256238	.	A	.	.	LowGQX	END=211256242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211263902	.	A	.	.	LowGQX	END=211264071	GT	./.
chr1	211276836	.	A	.	.	LowGQX	END=211276946	GT	./.
chr1	211280594	.	A	.	.	LowGQX	END=211280721	GT	./.
chr1	211307199	.	C	.	.	LowGQX	END=211307298	GT	./.
chr1	211432881	.	T	.	.	LowGQX	END=211432923	GT	./.
chr1	211432924	.	G	.	.	LowGQX	END=211432926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211432927	.	C	.	.	LowGQX	.	GT	./.
chr1	211432928	.	C	.	.	LowGQX	END=211432943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211432944	.	G	.	.	LowGQX	.	GT	./.
chr1	211432945	.	A	.	.	LowGQX	END=211432957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211432958	.	A	.	.	LowGQX	.	GT	./.
chr1	211432959	.	C	.	.	LowGQX	END=211432979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211432980	.	A	.	.	LowGQX	.	GT	./.
chr1	211432981	.	G	.	.	LowGQX	END=211432992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211432993	.	A	.	.	LowGQX	.	GT	./.
chr1	211432994	.	G	.	.	LowGQX	END=211432995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211432996	.	G	.	.	LowGQX	.	GT	./.
chr1	211432997	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211432998	.	C	.	.	LowGQX	.	GT	./.
chr1	211432999	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211433000	.	C	.	.	LowGQX	.	GT	./.
chr1	211433001	.	C	.	.	LowGQX	END=211433020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211433021	.	T	.	.	LowGQX	.	GT	./.
chr1	211433022	.	G	.	.	LowGQX	END=211433023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211433024	.	A	.	.	LowGQX	.	GT	./.
chr1	211433025	.	C	.	.	LowGQX	END=211433027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211433028	.	C	.	.	LowGQX	.	GT	./.
chr1	211433029	.	T	.	.	LowGQX	END=211433032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211433033	.	A	.	.	LowGQX	.	GT	./.
chr1	211433034	.	G	.	.	LowGQX	END=211433039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211433040	.	G	.	.	LowGQX	.	GT	./.
chr1	211433041	.	A	.	.	LowGQX	END=211433044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	211433045	.	G	.	.	LowGQX	.	GT	./.
chr1	211433046	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	211433047	.	T	.	.	LowGQX	.	GT	./.
chr1	211433048	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	211433049	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	211433050	.	A	.	.	LowGQX	END=211433062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	211433063	.	A	.	.	LowGQX	.	GT	./.
chr1	211433064	.	G	.	.	LowGQX	END=211433065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	211433066	.	A	.	.	LowGQX	.	GT	./.
chr1	211433067	.	C	.	.	LowGQX	END=211433068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	211433429	.	T	.	.	LowGQX	END=211433528	GT	./.
chr1	211441115	.	A	.	.	LowGQX	END=211441136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211441137	.	G	.	.	LowGQX	.	GT	./.
chr1	211441138	.	T	.	.	LowGQX	END=211441178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211441179	.	C	.	.	LowGQX	END=211441180	GT	./.
chr1	211441181	.	C	.	.	LowGQX	END=211441265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211444563	.	T	.	.	LowGQX	END=211444580	GT	./.
chr1	211444581	.	A	.	.	LowGQX	END=211444642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211444643	.	A	.	.	LowGQX	.	GT	./.
chr1	211444644	.	T	.	.	LowGQX	END=211444662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211444823	.	T	.	.	LowGQX	END=211444922	GT	./.
chr1	211447529	.	T	.	.	LowGQX	END=211447628	GT	./.
chr1	211449597	.	A	.	.	LowGQX	END=211449762	GT	./.
chr1	211451397	.	A	.	.	LowGQX	END=211451625	GT	./.
chr1	211452570	.	T	.	.	LowGQX	END=211452618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211452619	.	T	.	.	LowGQX	END=211452669	GT	./.
chr1	211462518	.	A	.	.	LowGQX	END=211462519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211462520	.	G	.	.	LowGQX	.	GT	./.
chr1	211462521	.	G	.	.	LowGQX	END=211462651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211462652	.	G	.	.	LowGQX	END=211462740	GT	./.
chr1	211464864	.	A	.	.	LowGQX	END=211464963	GT	./.
chr1	211469007	.	T	.	.	LowGQX	END=211469102	GT	./.
chr1	211469103	.	A	.	.	LowGQX	END=211469106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211477404	.	A	.	.	LowGQX	END=211477503	GT	./.
chr1	211485657	.	C	.	.	LowGQX	END=211485756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	211486060	.	A	.	.	LowGQX	END=211486195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211486196	.	G	T	9.30	LowGQX	BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=-0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr1	211486197	.	C	.	.	LowGQX	END=211486226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211486227	.	A	.	.	LowGQX	.	GT	./.
chr1	211486228	.	T	.	.	LowGQX	END=211486300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211486301	.	G	.	.	LowGQX	END=211486315	GT	./.
chr1	211486316	.	A	.	.	LowGQX	END=211486336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211486764	.	A	.	.	LowGQX	END=211486772	GT	./.
chr1	211486773	.	C	.	.	LowGQX	END=211486886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	211486887	.	T	.	.	LowGQX	END=211487112	GT	./.
chr1	211526580	.	G	.	.	LowGQX	END=211526614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211526615	.	T	.	.	LowGQX	END=211526801	GT	./.
chr1	211527731	.	C	.	.	LowGQX	END=211527830	GT	./.
chr1	211529707	.	A	.	.	LowGQX	END=211529761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211529762	.	C	.	.	LowGQX	.	GT	./.
chr1	211529763	.	A	.	.	LowGQX	END=211529768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211529769	.	G	.	.	LowGQX	.	GT	./.
chr1	211529770	.	C	.	.	LowGQX	END=211529791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211529792	.	T	.	.	LowGQX	.	GT	./.
chr1	211529793	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211529794	.	T	.	.	LowGQX	.	GT	./.
chr1	211529795	.	T	.	.	LowGQX	END=211529803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211529804	.	G	.	.	LowGQX	.	GT	./.
chr1	211529805	.	T	.	.	LowGQX	END=211529812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211533221	.	C	.	.	LowGQX	END=211533288	GT	./.
chr1	211533289	.	G	.	.	LowGQX	END=211533351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211533352	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	211533353	.	T	.	.	LowGQX	END=211533420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211534033	.	C	.	.	LowGQX	END=211534132	GT	./.
chr1	211534418	.	T	.	.	LowGQX	END=211534517	GT	./.
chr1	211538715	.	A	.	.	LowGQX	END=211538814	GT	./.
chr1	211542792	.	A	.	.	LowGQX	END=211542936	GT	./.
chr1	211544642	.	A	.	.	LowGQX	END=211544831	GT	./.
chr1	211545468	.	A	.	.	LowGQX	END=211545523	GT	./.
chr1	211545524	.	C	.	.	LowGQX	END=211545529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211545530	.	T	.	.	LowGQX	.	GT	./.
chr1	211545531	.	G	.	.	LowGQX	END=211545726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211545727	.	T	.	.	LowGQX	.	GT	./.
chr1	211545728	.	C	.	.	LowGQX	END=211545738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211545739	.	T	.	.	LowGQX	.	GT	./.
chr1	211545740	.	C	.	.	LowGQX	END=211545985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211545986	.	A	.	.	LowGQX	.	GT	./.
chr1	211545987	.	A	.	.	LowGQX	END=211546011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211546012	.	G	.	.	LowGQX	.	GT	./.
chr1	211546013	.	C	.	.	LowGQX	END=211546025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211546026	.	T	.	.	LowGQX	END=211546046	GT	./.
chr1	211652327	.	T	.	.	PASS	END=211652332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	211652333	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:75:60
chr1	211652334	.	C	.	.	PASS	END=211652359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	211652360	.	G	.	.	PASS	END=211652411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	211652412	.	C	.	.	PASS	END=211652452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	211652453	.	C	.	.	PASS	END=211652562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	211652563	.	C	.	.	PASS	END=211652593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	211652594	.	C	.	.	PASS	END=211652605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	211652606	.	C	.	.	PASS	END=211652618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	211652619	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:75:60
chr1	211652620	.	G	.	.	PASS	END=211652624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	211652625	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:60
chr1	211652626	.	C	.	.	PASS	END=211652629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	211652630	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:33:60
chr1	211652631	.	T	.	.	PASS	END=211652632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	211652633	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:87:60
chr1	211652634	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:63:60
chr1	211652635	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:84:60
chr1	211652636	.	C	.	.	PASS	END=211652638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:51:60
chr1	211652639	.	G	.	.	PASS	END=211652641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	211652642	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:63:60
chr1	211652643	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:48:60
chr1	211652644	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:78:60
chr1	211652645	.	C	.	.	PASS	END=211652648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr1	211652649	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:45:60
chr1	211652650	.	C	.	.	PASS	END=211652653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	211652654	.	C	.	.	PASS	END=211652655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:42:60
chr1	211652656	.	G	.	.	PASS	END=211652658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	211652659	.	G	.	.	PASS	END=211652660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	211652661	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:39:60
chr1	211652662	.	G	.	.	PASS	END=211652663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	211652664	.	C	.	.	PASS	END=211652665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	211652666	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:36:60
chr1	211652667	.	A	.	.	PASS	END=211652668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	211652669	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:72:60
chr1	211652670	.	C	.	.	PASS	END=211652671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:42:60
chr1	211652672	.	G	.	.	PASS	END=211652674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	211652675	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:51:60
chr1	211652676	.	G	.	.	PASS	END=211652677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	211652678	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:45:60
chr1	211652679	.	A	.	66.11	PASS	DP=24;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:18:24:36.11:60:36
chr1	211652680	.	G	.	.	PASS	END=211652682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	211652683	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:33:60
chr1	211652684	.	A	.	63.10	PASS	DP=26;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:20:26:33.10:60:33
chr1	211652685	.	G	.	.	PASS	END=211652686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr1	211652687	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:48:60
chr1	211652688	.	C	.	.	PASS	END=211652690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr1	211652691	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:63:60
chr1	211652692	.	G	.	.	PASS	END=211652698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	211652699	.	T	.	.	PASS	END=211652702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	211652703	.	C	.	.	PASS	END=211652704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	211652705	.	C	.	.	PASS	END=211652708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	211652709	.	A	.	.	PASS	END=211652716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	211652717	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr1	211652718	.	C	.	.	PASS	END=211652720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	211654411	.	C	.	.	PASS	END=211654431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	211654432	.	C	.	.	PASS	END=211654448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	211654449	.	T	.	.	PASS	END=211654473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	211654474	.	G	.	.	PASS	END=211654506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	211654507	.	A	.	.	PASS	END=211654533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	211654534	.	G	.	.	PASS	END=211654555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	211654556	.	G	.	.	PASS	END=211654685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:60
chr1	211654686	.	C	.	.	PASS	END=211654707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	211654708	.	G	.	.	PASS	END=211654748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	211654749	.	G	.	.	PASS	END=211654770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	211654771	.	G	.	.	PASS	END=211654783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	211654784	.	A	.	.	PASS	END=211654804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	211654805	.	C	.	.	PASS	END=211654808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	211748728	.	A	.	.	LowGQX	END=211749118	GT	./.
chr1	211749119	.	C	.	.	LowGQX	END=211749172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211749173	.	G	.	.	LowGQX	.	GT	./.
chr1	211749174	.	A	.	.	LowGQX	END=211749277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211749278	.	A	.	.	LowGQX	END=211749633	GT	./.
chr1	211751323	.	C	.	.	LowGQX	END=211751956	GT	./.
chr1	211831917	.	T	.	.	LowGQX	END=211832076	GT	./.
chr1	211836766	.	G	.	.	LowGQX	END=211836996	GT	./.
chr1	211840383	.	G	.	.	LowGQX	END=211840389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211840390	.	T	.	.	LowGQX	END=211840575	GT	./.
chr1	211842453	.	A	.	.	LowGQX	END=211842676	GT	./.
chr1	211843621	.	A	.	.	LowGQX	END=211843751	GT	./.
chr1	211844536	.	A	.	.	LowGQX	END=211844635	GT	./.
chr1	211846823	.	A	.	.	LowGQX	END=211847067	GT	./.
chr1	211847636	.	A	.	.	LowGQX	END=211847673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211847674	.	T	.	.	LowGQX	.	GT	./.
chr1	211847675	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	211847676	.	C	.	.	LowGQX	END=211847857	GT	./.
chr1	211848724	.	A	.	.	LowGQX	END=211848823	GT	./.
chr1	211923209	.	C	.	.	LowGQX	END=211923394	GT	./.
chr1	211924301	.	A	.	.	LowGQX	END=211924411	GT	./.
chr1	211952258	.	A	.	.	LowGQX	END=211952388	GT	./.
chr1	211956569	.	A	.	.	LowGQX	END=211956846	GT	./.
chr1	211960972	.	A	.	.	LowGQX	END=211961071	GT	./.
chr1	211966412	.	A	.	.	LowGQX	END=211966534	GT	./.
chr1	212002399	.	A	.	.	LowGQX	END=212002528	GT	./.
chr1	212002529	.	A	.	.	LowGQX	END=212002581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212002582	.	C	.	.	LowGQX	END=212002584	GT	./.
chr1	212002585	.	T	.	.	LowGQX	END=212002598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212002599	.	G	.	.	LowGQX	.	GT	./.
chr1	212002600	.	C	.	.	LowGQX	END=212002610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212002611	.	A	.	.	LowGQX	.	GT	./.
chr1	212002612	.	C	.	.	LowGQX	END=212002626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212002627	.	A	.	.	LowGQX	.	GT	./.
chr1	212002628	.	G	.	.	LowGQX	END=212002629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212002630	.	T	.	.	LowGQX	.	GT	./.
chr1	212002631	.	A	.	.	LowGQX	END=212002638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212002639	.	T	.	.	LowGQX	.	GT	./.
chr1	212002640	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212115164	.	G	.	.	LowGQX	END=212115455	GT	./.
chr1	212118124	.	A	.	.	LowGQX	END=212118313	GT	./.
chr1	212119947	.	A	.	.	LowGQX	END=212120049	GT	./.
chr1	212125909	.	G	.	.	LowGQX	END=212126088	GT	./.
chr1	212139757	.	T	.	.	LowGQX	END=212139856	GT	./.
chr1	212141168	.	T	.	.	LowGQX	END=212141325	GT	./.
chr1	212141853	.	G	.	.	LowGQX	END=212141885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	212141886	.	T	.	.	LowGQX	END=212142051	GT	./.
chr1	212148506	.	A	.	.	LowGQX	END=212148716	GT	./.
chr1	212149922	.	A	.	.	LowGQX	END=212150063	GT	./.
chr1	212151612	.	A	.	.	LowGQX	END=212151855	GT	./.
chr1	212154433	.	A	.	.	LowGQX	END=212154534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	212156016	.	A	.	.	LowGQX	END=212156154	GT	./.
chr1	212161226	.	A	.	.	LowGQX	END=212161347	GT	./.
chr1	212179979	.	A	.	.	LowGQX	END=212180105	GT	./.
chr1	212180590	.	A	.	.	LowGQX	END=212180671	GT	./.
chr1	212180672	.	G	.	.	LowGQX	END=212180676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212180677	.	G	.	.	LowGQX	.	GT	./.
chr1	212180678	.	A	.	.	LowGQX	END=212180686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212180687	.	G	.	.	LowGQX	.	GT	./.
chr1	212180688	.	C	.	.	LowGQX	END=212180735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212180736	.	C	.	.	LowGQX	.	GT	./.
chr1	212180737	.	A	.	.	LowGQX	END=212180781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212180782	.	G	.	.	LowGQX	.	GT	./.
chr1	212180783	.	T	.	.	LowGQX	END=212180793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	212184691	.	C	.	.	LowGQX	END=212184790	GT	./.
chr1	212190186	.	G	.	.	LowGQX	END=212190367	GT	./.
chr1	212193462	.	A	.	.	LowGQX	END=212193612	GT	./.
chr1	212194423	.	A	.	.	LowGQX	END=212194556	GT	./.
chr1	212208683	.	T	.	.	LowGQX	END=212208738	GT	./.
chr1	212208739	.	C	.	.	LowGQX	END=212208741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212208742	.	G	.	.	LowGQX	END=212208743	GT	./.
chr1	212208744	.	A	.	.	LowGQX	END=212208762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212208763	.	G	.	.	LowGQX	END=212208764	GT	./.
chr1	212208765	.	T	.	.	LowGQX	END=212208769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212208770	.	T	.	.	LowGQX	.	GT	./.
chr1	212208771	.	T	.	.	LowGQX	END=212208779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212208780	.	G	.	.	LowGQX	.	GT	./.
chr1	212208781	.	A	.	.	LowGQX	END=212208782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212209209	.	G	.	.	LowGQX	END=212209308	GT	./.
chr1	212216333	.	A	.	.	LowGQX	END=212216401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212216402	.	C	.	.	LowGQX	.	GT	./.
chr1	212216403	.	A	.	.	LowGQX	END=212216405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212216406	.	T	.	.	LowGQX	.	GT	./.
chr1	212216407	.	C	.	.	LowGQX	END=212216410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212216411	.	T	.	.	LowGQX	.	GT	./.
chr1	212216412	.	G	.	.	LowGQX	END=212216433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212216434	.	C	.	.	LowGQX	END=212216435	GT	./.
chr1	212216436	.	C	.	.	LowGQX	END=212216437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212216438	.	T	.	.	LowGQX	.	GT	./.
chr1	212216439	.	T	.	.	LowGQX	END=212216444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212216445	.	T	.	.	LowGQX	.	GT	./.
chr1	212216446	.	G	.	.	LowGQX	END=212216447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212216448	.	A	.	.	LowGQX	.	GT	./.
chr1	212216449	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212216450	.	C	.	.	LowGQX	.	GT	./.
chr1	212216451	.	T	.	.	LowGQX	END=212216453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212216454	.	T	.	.	LowGQX	.	GT	./.
chr1	212216455	.	C	.	.	LowGQX	END=212216462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212218000	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212218001	.	G	.	.	LowGQX	END=212218073	GT	./.
chr1	212218074	.	A	.	.	LowGQX	END=212218102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212220474	.	T	.	.	LowGQX	END=212220573	GT	./.
chr1	212220637	.	A	.	.	LowGQX	END=212220761	GT	./.
chr1	212236209	.	T	.	.	LowGQX	END=212236308	GT	./.
chr1	212238257	.	A	.	.	LowGQX	END=212238373	GT	./.
chr1	212240141	.	C	.	.	LowGQX	END=212240240	GT	./.
chr1	212241564	.	A	.	.	LowGQX	END=212241613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212241614	.	A	.	.	LowGQX	END=212241615	GT	./.
chr1	212241616	.	A	.	.	LowGQX	END=212241671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212241939	.	A	.	.	LowGQX	END=212242047	GT	./.
chr1	212245441	.	A	.	.	LowGQX	END=212245557	GT	./.
chr1	212251510	.	A	.	.	LowGQX	END=212251609	GT	./.
chr1	212253955	.	A	.	.	LowGQX	END=212254094	GT	./.
chr1	212273592	.	A	.	.	LowGQX	END=212273594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212273595	.	A	.	.	LowGQX	.	GT	./.
chr1	212273596	.	A	.	.	LowGQX	END=212273617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212273618	.	C	.	.	LowGQX	END=212273625	GT	./.
chr1	212273626	.	A	.	.	LowGQX	END=212273627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212273628	.	A	.	.	LowGQX	.	GT	./.
chr1	212273629	.	G	.	.	LowGQX	END=212273638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212273639	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	212273640	.	A	.	.	LowGQX	END=212273641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212273642	.	A	.	.	LowGQX	.	GT	./.
chr1	212273643	.	G	.	.	LowGQX	END=212273651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212273652	.	A	.	.	LowGQX	.	GT	./.
chr1	212273653	.	T	.	.	LowGQX	END=212273654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212273655	.	C	.	.	LowGQX	.	GT	./.
chr1	212273656	.	A	.	.	LowGQX	END=212273675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212273676	.	A	.	.	LowGQX	.	GT	./.
chr1	212273677	.	G	.	.	LowGQX	END=212273704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212273705	.	T	.	.	LowGQX	.	GT	./.
chr1	212273706	.	C	.	.	LowGQX	END=212273728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212273729	.	C	.	.	LowGQX	.	GT	./.
chr1	212273730	.	G	.	.	LowGQX	END=212273775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212273776	.	A	.	.	LowGQX	END=212274428	GT	./.
chr1	212276182	.	A	.	.	LowGQX	END=212276248	GT	./.
chr1	212276249	.	C	.	.	LowGQX	END=212276253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212276254	.	G	.	.	LowGQX	.	GT	./.
chr1	212276255	.	T	.	.	LowGQX	END=212276262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212276263	.	A	.	.	LowGQX	.	GT	./.
chr1	212276264	.	A	.	.	LowGQX	END=212276270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212276271	.	A	.	.	LowGQX	.	GT	./.
chr1	212276272	.	C	.	.	LowGQX	END=212276280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212276281	.	A	.	.	LowGQX	.	GT	./.
chr1	212276282	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212276283	.	A	.	.	LowGQX	.	GT	./.
chr1	212276284	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212459431	.	G	.	.	LowGQX	END=212459635	GT	./.
chr1	212475380	.	G	.	.	LowGQX	END=212475479	GT	./.
chr1	212502475	.	A	.	.	LowGQX	END=212502675	GT	./.
chr1	212506837	.	A	.	.	LowGQX	END=212506932	GT	./.
chr1	212506933	.	A	.	.	LowGQX	END=212506942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212515527	.	T	.	.	LowGQX	END=212515626	GT	./.
chr1	212519103	.	T	.	.	LowGQX	END=212519277	GT	./.
chr1	212520617	.	A	.	.	LowGQX	END=212520768	GT	./.
chr1	212521679	.	A	.	.	LowGQX	END=212521841	GT	./.
chr1	212522508	.	A	.	.	LowGQX	END=212522607	GT	./.
chr1	212526120	.	A	.	.	LowGQX	END=212526292	GT	./.
chr1	212529944	.	T	.	.	LowGQX	END=212530043	GT	./.
chr1	212530290	.	A	.	.	LowGQX	END=212530413	GT	./.
chr1	212530497	.	A	.	.	LowGQX	END=212530666	GT	./.
chr1	212532026	.	A	.	.	LowGQX	END=212532131	GT	./.
chr1	212533978	.	A	.	.	LowGQX	END=212534114	GT	./.
chr1	212538555	.	C	.	.	LowGQX	END=212538720	GT	./.
chr1	212548533	.	A	.	.	LowGQX	END=212548644	GT	./.
chr1	212550902	.	A	.	.	LowGQX	.	GT	./.
chr1	212550903	.	C	.	.	LowGQX	END=212550906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212550907	.	C	.	.	LowGQX	.	GT	./.
chr1	212550908	.	T	.	.	LowGQX	END=212550913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212550914	.	A	.	.	LowGQX	END=212550915	GT	./.
chr1	212550916	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212550917	.	T	.	.	LowGQX	.	GT	./.
chr1	212550918	.	C	.	.	LowGQX	END=212550919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212550920	.	A	.	.	LowGQX	.	GT	./.
chr1	212550921	.	C	.	.	LowGQX	END=212550937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212550938	.	T	.	.	LowGQX	.	GT	./.
chr1	212550939	.	C	.	.	LowGQX	END=212550947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212550948	.	T	.	.	LowGQX	END=212550975	GT	./.
chr1	212550976	.	G	.	.	LowGQX	END=212550980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212550981	.	A	.	.	LowGQX	.	GT	./.
chr1	212550982	.	G	.	.	LowGQX	END=212550989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212550990	.	A	.	.	LowGQX	.	GT	./.
chr1	212550991	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212550992	.	A	.	.	LowGQX	.	GT	./.
chr1	212550993	.	A	.	.	LowGQX	END=212551001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212551002	.	T	.	.	LowGQX	.	GT	./.
chr1	212551003	.	G	.	.	LowGQX	END=212551021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212551022	.	G	.	.	LowGQX	.	GT	./.
chr1	212551023	.	C	.	.	LowGQX	END=212551031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212551032	.	A	.	.	LowGQX	.	GT	./.
chr1	212551033	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212551034	.	C	.	.	LowGQX	.	GT	./.
chr1	212551035	.	C	.	.	LowGQX	END=212551039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212551040	.	C	.	.	LowGQX	.	GT	./.
chr1	212551041	.	T	.	.	LowGQX	END=212551043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212551044	.	T	.	.	LowGQX	.	GT	./.
chr1	212551045	.	T	.	.	LowGQX	END=212551050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212553235	.	A	.	.	LowGQX	END=212553381	GT	./.
chr1	212558614	.	A	.	.	LowGQX	END=212558640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212558641	.	G	.	.	LowGQX	.	GT	./.
chr1	212558642	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212558643	.	G	.	.	LowGQX	END=212558644	GT	./.
chr1	212558645	.	A	.	.	LowGQX	END=212558655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212558656	.	T	.	.	LowGQX	.	GT	./.
chr1	212558657	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212558658	.	G	.	.	LowGQX	.	GT	./.
chr1	212558659	.	G	.	.	LowGQX	END=212558666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212558667	.	A	.	.	LowGQX	END=212558668	GT	./.
chr1	212558669	.	T	.	.	LowGQX	END=212558675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	212558676	.	A	.	.	LowGQX	END=212558677	GT	./.
chr1	212558678	.	C	.	.	LowGQX	END=212558718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212558719	.	T	.	.	LowGQX	END=212558720	GT	./.
chr1	212558721	.	G	.	.	LowGQX	END=212558752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212558753	.	G	.	.	LowGQX	.	GT	./.
chr1	212558754	.	G	.	.	LowGQX	END=212558762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212558763	.	A	.	.	LowGQX	.	GT	./.
chr1	212558764	.	A	.	.	LowGQX	END=212558769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212560231	.	A	.	.	LowGQX	END=212560444	GT	./.
chr1	212583765	.	A	.	.	LowGQX	END=212583865	GT	./.
chr1	212587239	.	C	.	.	LowGQX	END=212587243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212587244	.	A	.	.	LowGQX	.	GT	./.
chr1	212587245	.	A	.	.	LowGQX	END=212587265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212587266	.	A	.	.	LowGQX	.	GT	./.
chr1	212587267	.	G	.	.	LowGQX	END=212587272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212587273	.	A	.	.	LowGQX	END=212587274	GT	./.
chr1	212587275	.	G	.	.	LowGQX	END=212587276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212587277	.	T	.	.	LowGQX	.	GT	./.
chr1	212587278	.	G	.	.	LowGQX	END=212587284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212587285	.	C	.	.	LowGQX	END=212587287	GT	./.
chr1	212587288	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212587289	.	G	.	.	LowGQX	.	GT	./.
chr1	212587290	.	A	.	.	LowGQX	END=212587296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212587297	.	C	.	.	LowGQX	.	GT	./.
chr1	212587298	.	G	.	.	LowGQX	END=212587299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212587300	.	T	.	.	LowGQX	.	GT	./.
chr1	212587301	.	T	.	.	LowGQX	END=212587303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212587304	.	C	.	.	LowGQX	.	GT	./.
chr1	212587305	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212587306	.	A	.	.	LowGQX	.	GT	./.
chr1	212587307	.	A	.	.	LowGQX	END=212587309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212587310	.	T	.	.	LowGQX	.	GT	./.
chr1	212587311	.	G	.	.	LowGQX	END=212587312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212587313	.	C	.	.	LowGQX	.	GT	./.
chr1	212587314	.	C	.	.	LowGQX	END=212587318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212587319	.	T	.	.	LowGQX	END=212587320	GT	./.
chr1	212587321	.	T	.	.	LowGQX	END=212587322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212587323	.	G	.	.	LowGQX	END=212587422	GT	./.
chr1	212588032	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212588033	.	A	.	.	LowGQX	.	GT	./.
chr1	212588034	.	A	.	.	LowGQX	END=212588044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212588045	.	G	.	.	LowGQX	END=212588046	GT	./.
chr1	212588047	.	C	.	.	LowGQX	END=212588049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212588050	.	T	.	.	LowGQX	.	GT	./.
chr1	212588051	.	C	.	.	LowGQX	END=212588067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212588068	.	T	.	.	LowGQX	.	GT	./.
chr1	212588069	.	G	.	.	LowGQX	END=212588077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212588078	.	T	.	.	LowGQX	.	GT	./.
chr1	212588079	.	G	.	.	LowGQX	END=212588089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212588090	.	G	.	.	LowGQX	END=212588091	GT	./.
chr1	212588092	.	C	.	.	LowGQX	END=212588100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212588101	.	G	.	.	LowGQX	END=212588102	GT	./.
chr1	212588103	.	A	.	.	LowGQX	END=212588105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212588106	.	G	.	.	LowGQX	.	GT	./.
chr1	212588107	.	A	.	.	LowGQX	END=212588114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212588115	.	T	.	.	LowGQX	.	GT	./.
chr1	212588116	.	T	.	.	LowGQX	END=212588127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212588128	.	A	.	.	LowGQX	.	GT	./.
chr1	212588129	.	G	.	.	LowGQX	END=212588131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212606273	.	C	.	.	LowGQX	END=212606464	GT	./.
chr1	212615888	.	C	.	.	LowGQX	END=212615987	GT	./.
chr1	212617679	.	A	.	.	LowGQX	END=212617681	GT	./.
chr1	212617682	.	G	.	.	LowGQX	END=212617730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212617731	.	A	.	.	LowGQX	.	GT	./.
chr1	212617732	.	C	.	.	LowGQX	END=212617786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	212619170	.	A	.	.	LowGQX	END=212619350	GT	./.
chr1	212788313	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:21:60
chr1	212788314	.	T	.	.	PASS	END=212788315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	212788316	.	C	.	.	PASS	END=212788326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	212788327	.	C	.	.	PASS	END=212788331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	212788332	.	A	.	.	PASS	END=212788340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	212788341	.	G	.	.	PASS	END=212788358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	212788359	.	G	.	.	PASS	END=212788366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	212788367	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:34:60
chr1	212788368	.	T	.	.	PASS	END=212788375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	212788376	.	C	.	.	PASS	END=212788394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	212788395	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:57:60
chr1	212788396	.	C	.	.	PASS	END=212788417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	212788418	.	A	.	.	PASS	END=212788420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:78:60
chr1	212788421	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:66:60
chr1	212788422	.	T	.	.	PASS	END=212788552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	212788553	.	T	.	.	PASS	END=212788573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	212788574	.	C	.	.	PASS	END=212788584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	212788585	.	G	.	.	PASS	END=212788588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr1	212788589	.	A	.	.	PASS	END=212788595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	212788596	.	A	.	.	PASS	END=212788599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr1	212788600	.	C	.	.	PASS	END=212788615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	212788616	.	A	.	.	PASS	END=212788648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	212788649	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:54:60
chr1	212788650	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:33:60
chr1	212788651	.	C	.	.	PASS	END=212788654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:69:60
chr1	212791418	.	T	.	.	PASS	END=212791442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:85:60
chr1	212791443	.	A	.	.	PASS	END=212791546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	212791547	.	A	.	.	PASS	END=212791581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	212791582	.	T	.	.	PASS	END=212791593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	212791594	.	T	.	.	PASS	END=212791612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	212791613	.	C	T	334.59	PASS	BaseQRankSum=-0.073;DP=27;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=1.879;QD=12.39;ReadPosRankSum=0.512;SB=-52.99	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:12,15:27:99:365,0,372:60:99:0.556
chr1	212791614	.	G	.	.	PASS	END=212791618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	212791619	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:51:60
chr1	212791620	.	C	.	.	PASS	END=212791621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	212791622	.	T	.	.	PASS	END=212791626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	212791627	.	A	.	.	PASS	END=212791629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	212791630	.	T	.	.	PASS	END=212791631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	212791632	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:9:60
chr1	212791633	.	A	.	.	PASS	END=212791636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	212792337	.	A	.	.	PASS	END=212792375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	212792376	.	A	.	.	PASS	END=212792418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	212792419	.	G	.	.	PASS	END=212792498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	212792649	.	C	.	.	PASS	END=212792693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	212792694	.	C	.	.	PASS	END=212792795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	212792796	.	C	.	.	PASS	END=212792814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	212792815	.	T	.	.	PASS	END=212792833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	212792834	.	G	.	.	PASS	END=212792868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	212792869	.	A	.	.	PASS	END=212792883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	212792884	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:42:60
chr1	212792885	.	A	.	.	PASS	END=212792901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	212792902	.	T	.	.	PASS	END=212792907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	212792908	.	T	.	.	PASS	END=212792909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	212792910	.	T	.	.	PASS	END=212792911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	212792912	.	G	.	.	PASS	END=212792918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	212792919	.	C	.	.	PASS	END=212792926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	212792927	.	T	.	.	PASS	END=212792930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	212792931	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:2:60
chr1	212792932	.	A	.	.	PASS	END=212792948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	212798218	.	C	.	.	LowGQX	END=212799439	GT	./.
chr1	212799440	.	G	.	.	LowGQX	END=212799473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212799474	.	G	.	.	LowGQX	.	GT	./.
chr1	212799475	.	G	.	.	LowGQX	END=212799493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212799494	.	A	.	.	LowGQX	END=212799495	GT	./.
chr1	212799496	.	G	.	.	LowGQX	END=212799499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212799500	.	G	.	.	LowGQX	.	GT	./.
chr1	212799501	.	G	.	.	LowGQX	END=212799502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212799503	.	A	.	.	LowGQX	.	GT	./.
chr1	212799504	.	A	.	.	LowGQX	END=212799511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212799512	.	G	.	.	LowGQX	.	GT	./.
chr1	212799513	.	G	.	.	LowGQX	END=212799519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212799520	.	G	.	.	LowGQX	.	GT	./.
chr1	212799521	.	A	.	.	LowGQX	END=212799528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212799529	.	C	.	.	LowGQX	.	GT	./.
chr1	212799530	.	C	.	.	LowGQX	END=212799575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212799576	.	A	.	.	LowGQX	.	GT	./.
chr1	212799577	.	A	.	.	LowGQX	END=212799592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212799593	.	C	.	.	LowGQX	.	GT	./.
chr1	212799594	.	T	.	.	LowGQX	END=212799602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212799603	.	T	.	.	LowGQX	.	GT	./.
chr1	212799604	.	C	.	.	LowGQX	END=212799608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212799609	.	T	.	.	LowGQX	.	GT	./.
chr1	212799610	.	T	.	.	LowGQX	END=212799639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212799640	.	A	.	.	LowGQX	.	GT	./.
chr1	212799641	.	G	.	.	LowGQX	END=212799670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212799671	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	212799672	.	A	.	.	LowGQX	END=212799730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212799731	.	C	.	.	LowGQX	END=212800006	GT	./.
chr1	212860131	.	C	.	.	LowGQX	END=212860141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212860142	.	C	.	.	LowGQX	.	GT	./.
chr1	212860143	.	A	.	.	LowGQX	END=212860152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212860153	.	C	.	.	LowGQX	.	GT	./.
chr1	212860154	.	C	.	.	LowGQX	END=212860155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212860156	.	C	.	.	LowGQX	END=212860251	GT	./.
chr1	212860252	.	T	.	.	LowGQX	END=212860256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212860257	.	T	.	.	LowGQX	.	GT	./.
chr1	212860258	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212860259	.	C	.	.	LowGQX	END=212860260	GT	./.
chr1	212860261	.	C	.	.	LowGQX	END=212860263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212860264	.	T	.	.	LowGQX	.	GT	./.
chr1	212860265	.	C	.	.	LowGQX	END=212860267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212860268	.	C	.	.	LowGQX	.	GT	./.
chr1	212860269	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212860270	.	T	.	.	LowGQX	.	GT	./.
chr1	212860271	.	C	.	.	LowGQX	END=212860276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212860277	.	C	.	.	LowGQX	END=212860279	GT	./.
chr1	212860280	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212860281	.	C	.	.	LowGQX	.	GT	./.
chr1	212860282	.	T	.	.	LowGQX	END=212860290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212860291	.	T	.	.	LowGQX	.	GT	./.
chr1	212860292	.	G	.	.	LowGQX	END=212860293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212860294	.	T	.	.	LowGQX	.	GT	./.
chr1	212860295	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212860296	.	T	.	.	LowGQX	.	GT	./.
chr1	212860297	.	T	.	.	LowGQX	END=212860298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212860299	.	T	.	.	LowGQX	.	GT	./.
chr1	212860300	.	C	.	.	LowGQX	END=212860304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212860305	.	T	.	.	LowGQX	.	GT	./.
chr1	212860306	.	C	.	.	LowGQX	END=212860317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212860318	.	A	.	.	LowGQX	END=212860319	GT	./.
chr1	212860320	.	T	.	.	LowGQX	END=212860323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212870301	.	A	.	.	LowGQX	END=212870409	GT	./.
chr1	212873010	.	T	.	.	LowGQX	END=212873161	GT	./.
chr1	212900393	.	G	.	.	LowGQX	END=212900419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	212900420	.	T	.	.	LowGQX	.	GT	./.
chr1	212900421	.	C	.	.	LowGQX	END=212900462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	212900463	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	212900464	.	T	.	.	LowGQX	END=212900486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212900487	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	212900488	.	A	.	.	LowGQX	END=212900502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212900503	.	A	.	.	LowGQX	END=212900552	GT	./.
chr1	212911748	.	G	.	.	LowGQX	END=212912030	GT	./.
chr1	212912860	.	A	.	.	LowGQX	END=212912959	GT	./.
chr1	212937315	.	A	.	.	LowGQX	END=212937368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212937369	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	212937370	.	C	.	.	LowGQX	END=212937414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212939523	.	A	.	.	LowGQX	END=212939622	GT	./.
chr1	212955351	.	T	.	.	LowGQX	END=212955450	GT	./.
chr1	212955692	.	C	.	.	LowGQX	END=212955791	GT	./.
chr1	212957703	.	A	.	.	LowGQX	END=212957837	GT	./.
chr1	212960891	.	A	.	.	LowGQX	END=212960986	GT	./.
chr1	212960987	.	A	.	.	LowGQX	END=212960988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212960989	.	A	.	.	LowGQX	END=212960990	GT	./.
chr1	212964870	.	A	.	.	LowGQX	END=212964906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212964907	.	C	.	.	LowGQX	END=212964951	GT	./.
chr1	212964952	.	G	.	.	LowGQX	END=212964992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212964993	.	A	.	.	LowGQX	.	GT	./.
chr1	212964994	.	C	.	.	LowGQX	END=212965009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212965010	.	G	.	.	LowGQX	.	GT	./.
chr1	212965011	.	G	.	.	LowGQX	END=212965020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212965021	.	A	.	.	LowGQX	.	GT	./.
chr1	212965022	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212965023	.	A	.	.	LowGQX	.	GT	./.
chr1	212965024	.	C	.	.	LowGQX	END=212965025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212965026	.	A	.	.	LowGQX	.	GT	./.
chr1	212965027	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212965028	.	G	.	.	LowGQX	.	GT	./.
chr1	212965029	.	G	.	.	LowGQX	END=212965042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212965043	.	G	.	.	LowGQX	.	GT	./.
chr1	212965044	.	C	.	.	LowGQX	END=212965045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212965046	.	A	.	.	LowGQX	.	GT	./.
chr1	212965047	.	G	.	.	LowGQX	END=212965052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212965053	.	A	.	.	LowGQX	.	GT	./.
chr1	212965054	.	G	.	.	LowGQX	END=212965062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212965063	.	C	.	.	LowGQX	.	GT	./.
chr1	212965064	.	C	.	.	LowGQX	END=212965071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212965072	.	G	.	.	LowGQX	END=212965073	GT	./.
chr1	212965074	.	T	.	.	LowGQX	END=212965075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212965076	.	A	.	.	LowGQX	END=212965078	GT	./.
chr1	212965079	.	G	.	.	LowGQX	END=212965085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212965086	.	A	.	.	LowGQX	END=212965087	GT	./.
chr1	212965088	.	C	.	.	LowGQX	END=212965093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212965094	.	A	.	.	LowGQX	.	GT	./.
chr1	212965095	.	G	.	.	LowGQX	END=212965097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212965098	.	C	.	.	LowGQX	.	GT	./.
chr1	212965099	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212965100	.	C	.	.	LowGQX	END=212965107	GT	./.
chr1	212965247	.	G	.	.	LowGQX	END=212965328	GT	./.
chr1	212965329	.	C	.	.	LowGQX	END=212965334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212965335	.	T	.	.	LowGQX	.	GT	./.
chr1	212965336	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212965337	.	A	.	.	LowGQX	.	GT	./.
chr1	212965338	.	G	.	.	LowGQX	END=212965340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212965341	.	C	.	.	LowGQX	.	GT	./.
chr1	212965342	.	G	.	.	LowGQX	END=212965345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212965346	.	C	.	.	LowGQX	.	GT	./.
chr1	212968070	.	A	.	.	LowGQX	END=212968108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212968109	.	A	.	.	LowGQX	.	GT	./.
chr1	212968110	.	G	.	.	LowGQX	END=212968169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212968404	.	T	.	.	LowGQX	END=212968503	GT	./.
chr1	212969787	.	A	.	.	LowGQX	END=212969842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	212969843	.	T	.	.	LowGQX	END=212969945	GT	./.
chr1	212970447	.	T	.	.	LowGQX	END=212970546	GT	./.
chr1	212976025	.	T	.	.	LowGQX	END=212976124	GT	./.
chr1	212977660	.	A	.	.	LowGQX	END=212977773	GT	./.
chr1	212977916	.	A	.	.	LowGQX	END=212977921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212977922	.	T	.	.	LowGQX	.	GT	./.
chr1	212977923	.	G	.	.	LowGQX	END=212977928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212977929	.	G	.	.	LowGQX	END=212977931	GT	./.
chr1	212977932	.	A	.	.	LowGQX	END=212977940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212977941	.	T	.	.	LowGQX	.	GT	./.
chr1	212977942	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212977943	.	T	.	.	LowGQX	.	GT	./.
chr1	212977944	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212977945	.	C	.	.	LowGQX	.	GT	./.
chr1	212977946	.	A	.	.	LowGQX	END=212977950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212977951	.	C	.	.	LowGQX	END=212977952	GT	./.
chr1	212977953	.	C	.	.	LowGQX	END=212977959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212977960	.	G	.	.	LowGQX	.	GT	./.
chr1	212977961	.	G	.	.	LowGQX	END=212977990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212977991	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	212977992	.	A	.	.	LowGQX	END=212978001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	212978002	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	212978003	.	T	.	.	LowGQX	END=212978007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	212978008	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	212978009	.	A	.	.	LowGQX	END=212978012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	212978013	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	212978014	.	A	.	.	LowGQX	END=212978015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	212981076	.	A	.	.	LowGQX	END=212981192	GT	./.
chr1	212985568	.	G	.	.	LowGQX	END=212985695	GT	./.
chr1	212985696	.	T	.	.	LowGQX	END=212985727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	212988353	.	A	.	.	LowGQX	END=212988500	GT	./.
chr1	213003492	.	G	.	.	LowGQX	END=213003594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	213003595	.	T	C	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr1	213003596	.	G	.	.	LowGQX	END=213003631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	213003632	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	213003633	.	T	.	.	LowGQX	END=213003643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213009213	.	A	.	.	LowGQX	END=213009493	GT	./.
chr1	213031744	.	G	.	.	LowGQX	END=213031751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	213031752	.	G	.	.	LowGQX	END=213031753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	213031754	.	A	.	.	LowGQX	END=213031755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	213031756	.	T	.	.	LowGQX	END=213031766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	213031767	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr1	213031768	.	G	.	.	LowGQX	END=213031775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	213031776	.	G	.	.	PASS	END=213031778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	213031779	.	C	.	.	LowGQX	END=213031782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	213031783	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	213031784	.	G	.	.	LowGQX	END=213031787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	213031788	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	213031789	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	213031790	.	G	.	.	PASS	END=213031792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:60
chr1	213031793	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	213031794	.	T	.	.	PASS	END=213031809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	213031810	.	G	.	.	PASS	END=213031811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	213031812	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:36:60
chr1	213031813	.	G	.	.	PASS	END=213031816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	213031817	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:60
chr1	213031818	.	G	.	.	PASS	END=213031832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	213031833	.	G	.	.	PASS	END=213031837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	213031838	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:51:60
chr1	213031839	.	A	.	60.06	PASS	DP=18;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:14:18:30.07:60:30
chr1	213031840	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	213031841	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:60
chr1	213031842	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:48:60
chr1	213031843	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:17:60
chr1	213031844	.	C	.	.	PASS	END=213031846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	213031847	.	T	.	.	PASS	END=213031853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	213031854	.	A	.	.	PASS	END=213031856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr1	213031857	.	A	.	.	PASS	END=213031858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	213031859	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:10:60
chr1	213031860	.	C	.	.	PASS	END=213031867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	213031868	.	T	.	.	PASS	END=213031872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	213031873	.	A	.	.	PASS	END=213031875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	213031876	.	G	.	.	PASS	END=213031882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	213031883	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	213031884	.	C	.	.	PASS	END=213031889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	213031890	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:75:60
chr1	213031891	.	A	.	.	PASS	END=213031893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	213031894	.	G	.	.	PASS	END=213031905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	213031906	.	C	.	.	PASS	END=213031911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	213031912	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:35:60
chr1	213031913	.	A	.	.	PASS	END=213031918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	213031919	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:60:60
chr1	213031920	.	C	.	.	PASS	END=213031937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	213031938	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:72:60
chr1	213031939	.	G	.	.	PASS	END=213031947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	213031948	.	G	C	689.46	SB	BaseQRankSum=0.586;DP=45;Dels=0.00;FS=0.000;HRun=6;HaplotypeScore=8.5946;MQ=60;MQ0=0;MQRankSum=0.218;QD=15.32;ReadPosRankSum=2.562;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:19,26:45:99:719,0,575:60:99:0.578
chr1	213031949	.	C	.	.	PASS	END=213031955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	213031956	.	G	.	.	PASS	END=213031991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	213031992	.	G	.	.	PASS	END=213032001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	213032002	.	C	.	.	PASS	END=213032028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	213032029	.	G	.	.	PASS	END=213032070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	213032071	.	G	.	.	PASS	END=213032106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr1	213032107	.	C	.	.	PASS	END=213032221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:60
chr1	213032222	.	T	.	.	PASS	END=213032256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	213032257	.	C	.	.	PASS	END=213032280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	213032281	.	C	.	.	PASS	END=213032309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	213032310	.	C	.	.	PASS	END=213032333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	213032334	.	C	.	.	PASS	END=213032356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	213032357	.	C	.	.	PASS	END=213032385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	213032386	.	C	.	.	PASS	END=213032425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	213032426	.	C	.	.	PASS	END=213032451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	213032452	.	T	.	.	PASS	END=213032453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	213032454	.	G	.	.	PASS	END=213032464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	213032465	.	T	.	.	PASS	END=213032468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	213032469	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:90:60
chr1	213032470	.	T	.	.	PASS	END=213032475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	213032476	.	T	.	.	PASS	END=213032478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	213032479	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:42:60
chr1	213032480	.	T	.	.	PASS	END=213032494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	213032495	.	T	.	.	PASS	END=213032497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	213032498	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:57:60
chr1	213032499	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:15:60
chr1	213032500	.	A	.	.	PASS	END=213032504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	213032505	.	T	.	.	PASS	END=213032508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	213032509	.	G	.	.	PASS	END=213032510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	213032511	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:9:60
chr1	213032512	.	A	.	.	PASS	END=213032520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	213032521	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:3:60
chr1	213032522	.	T	.	.	PASS	END=213032529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	213032530	.	C	.	.	PASS	END=213032541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	213032542	.	G	.	.	PASS	END=213032545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	213032546	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	213032547	.	G	.	.	LowGQX	END=213032555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	213032556	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr1	213032557	.	A	.	.	LowGQX	END=213032559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	213032560	.	C	.	.	LowGQX	END=213032562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	213032563	.	A	.	.	LowGQX	END=213032566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	213032567	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	213032568	.	T	A	27.58	LowGQX;SB	BaseQRankSum=1.495;DP=7;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-0.198;QD=3.94;ReadPosRankSum=-0.922;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:5,2:7:57.56:58,0,172:60:28:0.286
chr1	213032569	.	A	.	.	LowGQX	END=213032571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	213032572	.	A	.	.	LowGQX	END=213032575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	213032576	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	213032577	.	G	.	.	LowGQX	END=213032579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	213032580	.	A	.	.	LowGQX	END=213032583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	213037016	.	T	.	.	PASS	END=213037043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	213037044	.	T	.	.	PASS	END=213037107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	213037108	.	A	.	.	PASS	END=213037253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	213037254	.	A	.	.	PASS	END=213037262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	213045969	.	C	.	.	PASS	END=213046005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	213046006	.	G	.	.	PASS	END=213046032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	213046033	.	A	.	.	PASS	END=213046051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr1	213046052	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:70:60
chr1	213046053	.	A	.	.	PASS	END=213046066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	213046067	.	C	.	.	PASS	END=213046163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	213046164	.	A	.	.	PASS	END=213046202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	213046203	.	T	.	.	PASS	END=213046211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	213056662	.	T	.	.	PASS	END=213056673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	213056674	.	G	.	.	PASS	END=213056694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	213056695	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:60:60
chr1	213056696	.	T	.	.	PASS	END=213056713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	213056714	.	T	.	.	PASS	END=213056799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	213056800	.	A	.	.	PASS	END=213056805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	213056806	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:58:27:60
chr1	213056807	.	A	.	.	PASS	END=213056814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	213056815	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:66:60
chr1	213056816	.	C	.	.	PASS	END=213056818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	213056819	.	A	G	1256.77	PASS	DP=49;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=9.5084;MQ=60;MQ0=0;QD=25.65;SB=-609.93	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,48:49:96.31:1290,96,0:60:96:1.000
chr1	213056820	.	A	.	.	PASS	END=213056831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	213058584	.	G	.	.	PASS	END=213058622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	213058623	.	A	.	.	PASS	END=213058677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr1	213058678	.	T	.	.	PASS	END=213058720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	213058721	.	T	.	.	PASS	END=213058744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	213058745	.	G	.	.	PASS	END=213058766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	213058767	.	T	.	.	PASS	END=213058772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	213058773	.	C	.	.	PASS	END=213058789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	213061182	.	T	.	.	PASS	END=213061197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	213061198	.	A	.	.	PASS	END=213061205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	213061206	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:15:60
chr1	213061207	.	T	.	.	PASS	END=213061230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	213061231	.	A	.	.	PASS	END=213061235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	213061236	.	G	.	.	PASS	END=213061299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	213061300	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:66:60
chr1	213061301	.	T	.	.	PASS	END=213061344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	213061345	.	T	.	.	PASS	END=213061357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	213061358	.	T	.	.	PASS	END=213061361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	213061362	.	T	A	195.35	PASS	BaseQRankSum=0.110;DP=30;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.858;QD=6.51;ReadPosRankSum=1.782;SB=-83.10	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:20,10:30:99:225,0,540:60:99:0.333
chr1	213061363	.	A	.	.	PASS	END=213061381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	213061382	.	T	.	.	PASS	END=213061394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	213061780	.	G	.	.	PASS	END=213061793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	213061794	.	G	.	.	PASS	END=213061856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	213061857	.	T	.	.	PASS	END=213061934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	213061935	.	A	.	.	PASS	END=213061945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	213061946	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:73:60
chr1	213061947	.	G	.	.	PASS	END=213061987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	213062437	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:84:60
chr1	213062438	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:43:60
chr1	213062439	.	T	.	.	PASS	END=213062463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	213062464	.	A	.	.	PASS	END=213062469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:66:60
chr1	213062470	.	T	.	.	PASS	END=213062475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	213062476	.	A	.	.	PASS	END=213062507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	213062508	.	A	.	.	PASS	END=213062531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr1	213062532	.	A	.	.	PASS	END=213062539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	213062540	.	G	.	.	PASS	END=213062597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	213062598	.	A	.	.	PASS	END=213062626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	213062627	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:70:60
chr1	213062628	.	G	.	.	PASS	END=213062650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	213068272	.	T	.	.	PASS	END=213068378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	213068379	.	A	.	.	PASS	END=213068403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	213068404	.	T	C	913.55	PASS	BaseQRankSum=0.012;DP=68;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8935;MQ=60;MQ0=0;MQRankSum=1.933;QD=13.43;ReadPosRankSum=-0.677;SB=-506.38	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:31,37:68:99:944,0,932:60:99:0.544
chr1	213068405	.	A	.	.	PASS	END=213068435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	213068436	.	A	G	859.34	PASS	BaseQRankSum=0.140;DP=80;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=0.853;QD=10.74;ReadPosRankSum=2.471;SB=-486.22	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,38:80:99:889,0,1192:60:99:0.475
chr1	213068437	.	T	.	.	PASS	END=213068446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	213068507	.	A	.	.	PASS	END=213068542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	213068542	.	C	CTGAT	1689.79	PASS	BaseQRankSum=1.955;DP=92;FS=0.000;HRun=0;HaplotypeScore=165.1111;MQ=60;MQ0=0;MQRankSum=-0.272;QD=18.37;ReadPosRankSum=1.629;SB=-678.13	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:61,30:92:99:1729,0,3627:60:99:0.330
chr1	213068543	.	T	.	.	PASS	END=213068603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	213068604	.	T	.	.	PASS	END=213068655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	213068656	.	T	.	.	PASS	END=213068665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	213068666	.	G	.	.	PASS	END=213068683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	213124883	.	C	.	.	LowGQX	END=213124921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213124922	.	A	.	.	LowGQX	.	GT	./.
chr1	213124923	.	C	.	.	LowGQX	END=213125014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213125015	.	A	.	.	LowGQX	.	GT	./.
chr1	213125016	.	C	.	.	LowGQX	END=213125028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213125029	.	T	.	.	LowGQX	.	GT	./.
chr1	213125030	.	T	.	.	LowGQX	END=213125031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213125032	.	C	.	.	LowGQX	END=213125038	GT	./.
chr1	213125039	.	A	.	.	LowGQX	END=213125045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213125046	.	C	.	.	LowGQX	.	GT	./.
chr1	213125047	.	G	.	.	LowGQX	END=213125162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213134503	.	T	.	.	LowGQX	END=213134602	GT	./.
chr1	213139042	.	T	.	.	LowGQX	END=213139141	GT	./.
chr1	213139600	.	C	.	.	LowGQX	END=213139699	GT	./.
chr1	213140413	.	T	.	.	LowGQX	END=213140512	GT	./.
chr1	213145910	.	A	.	.	LowGQX	END=213145939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	213145940	.	G	.	.	LowGQX	.	GT	./.
chr1	213145941	.	C	.	.	LowGQX	END=213146010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213146011	.	T	.	.	LowGQX	END=213146309	GT	./.
chr1	213146725	.	C	.	.	LowGQX	END=213146824	GT	./.
chr1	213147295	.	A	.	.	LowGQX	END=213147414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	213161841	.	C	.	.	LowGQX	END=213161940	GT	./.
chr1	213168381	.	A	.	.	LowGQX	END=213168536	GT	./.
chr1	213170495	.	A	.	.	LowGQX	END=213170662	GT	./.
chr1	213173647	.	C	.	.	LowGQX	END=213173746	GT	./.
chr1	213174126	.	A	.	.	LowGQX	END=213174295	GT	./.
chr1	213178373	.	A	.	.	LowGQX	END=213178798	GT	./.
chr1	213180326	.	C	.	.	LowGQX	END=213180466	GT	./.
chr1	213180467	.	G	.	.	LowGQX	END=213180542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213181550	.	A	.	.	LowGQX	END=213181810	GT	./.
chr1	213184503	.	C	.	.	LowGQX	.	GT	./.
chr1	213184504	.	T	.	.	LowGQX	END=213184530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213184531	.	A	.	.	LowGQX	.	GT	./.
chr1	213184532	.	C	.	.	LowGQX	END=213184538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213184539	.	A	.	.	LowGQX	.	GT	./.
chr1	213184540	.	G	.	.	LowGQX	END=213184571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213184572	.	G	.	.	LowGQX	.	GT	./.
chr1	213184573	.	T	.	.	LowGQX	END=213184602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213186433	.	A	.	.	LowGQX	END=213186762	GT	./.
chr1	213188935	.	G	.	.	LowGQX	END=213189034	GT	./.
chr1	213224745	.	G	.	.	LowGQX	END=213224853	GT	./.
chr1	213244256	.	T	.	.	LowGQX	END=213244415	GT	./.
chr1	213251036	.	A	.	.	LowGQX	END=213251160	GT	./.
chr1	213277794	.	A	.	.	LowGQX	END=213277913	GT	./.
chr1	213290656	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213290657	.	A	.	.	LowGQX	.	GT	./.
chr1	213290658	.	G	.	.	LowGQX	END=213290664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213290665	.	A	.	.	LowGQX	.	GT	./.
chr1	213290666	.	T	.	.	LowGQX	END=213290670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213290671	.	A	.	.	LowGQX	.	GT	./.
chr1	213290672	.	A	.	.	LowGQX	END=213290676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213290677	.	A	.	.	LowGQX	.	GT	./.
chr1	213290678	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213290679	.	T	.	.	LowGQX	.	GT	./.
chr1	213290680	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213290681	.	C	.	.	LowGQX	.	GT	./.
chr1	213290682	.	T	.	.	LowGQX	END=213290684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213290685	.	A	.	.	LowGQX	.	GT	./.
chr1	213290686	.	T	.	.	LowGQX	END=213290691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213290692	.	G	.	.	LowGQX	.	GT	./.
chr1	213290693	.	G	.	.	LowGQX	END=213290703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213290704	.	G	.	.	LowGQX	END=213290705	GT	./.
chr1	213290706	.	T	.	.	LowGQX	END=213290714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213290715	.	T	.	.	LowGQX	.	GT	./.
chr1	213290716	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213290717	.	C	.	.	LowGQX	END=213290755	GT	./.
chr1	213302868	.	A	.	.	LowGQX	END=213302948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213302949	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	213302950	.	A	.	.	LowGQX	END=213303044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213303045	.	A	.	.	LowGQX	END=213303234	GT	./.
chr1	213341199	.	A	.	.	LowGQX	END=213341318	GT	./.
chr1	213349740	.	T	.	.	LowGQX	END=213349758	GT	./.
chr1	213349759	.	G	.	.	LowGQX	END=213349775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213349776	.	A	.	.	LowGQX	.	GT	./.
chr1	213349777	.	A	.	.	LowGQX	END=213349784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213349785	.	A	.	.	LowGQX	.	GT	./.
chr1	213349786	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213349787	.	C	.	.	LowGQX	.	GT	./.
chr1	213349788	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213349789	.	C	.	.	LowGQX	END=213349790	GT	./.
chr1	213349791	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213349792	.	C	.	.	LowGQX	.	GT	./.
chr1	213349793	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213349794	.	G	.	.	LowGQX	.	GT	./.
chr1	213349795	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213349796	.	G	.	.	LowGQX	END=213349797	GT	./.
chr1	213349798	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213349799	.	G	.	.	LowGQX	.	GT	./.
chr1	213349800	.	C	.	.	LowGQX	END=213349805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213349806	.	G	.	.	LowGQX	END=213349807	GT	./.
chr1	213349808	.	C	.	.	LowGQX	END=213349810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213349811	.	C	.	.	LowGQX	.	GT	./.
chr1	213349812	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213349813	.	G	.	.	LowGQX	.	GT	./.
chr1	213349814	.	A	.	.	LowGQX	END=213349817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213349818	.	C	.	.	LowGQX	.	GT	./.
chr1	213349819	.	T	.	.	LowGQX	END=213349820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213349821	.	G	.	.	LowGQX	.	GT	./.
chr1	213349822	.	G	.	.	LowGQX	END=213349826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213349827	.	A	.	.	LowGQX	.	GT	./.
chr1	213349828	.	T	.	.	LowGQX	END=213349830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213349831	.	A	.	.	LowGQX	END=213349832	GT	./.
chr1	213349833	.	A	.	.	LowGQX	END=213349834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213349835	.	G	.	.	LowGQX	.	GT	./.
chr1	213349836	.	G	.	.	LowGQX	END=213349837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213349838	.	A	.	.	LowGQX	.	GT	./.
chr1	213349839	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213403758	.	C	.	.	LowGQX	END=213403913	GT	./.
chr1	213405464	.	A	.	.	LowGQX	END=213405600	GT	./.
chr1	213414043	.	A	.	.	LowGQX	END=213414298	GT	./.
chr1	213414299	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213414300	.	C	.	.	LowGQX	END=213414301	GT	./.
chr1	213414302	.	C	.	.	LowGQX	END=213414306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213414307	.	G	.	.	LowGQX	END=213414308	GT	./.
chr1	213414309	.	G	.	.	LowGQX	END=213414320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213414321	.	G	.	.	LowGQX	.	GT	./.
chr1	213414322	.	T	.	.	LowGQX	END=213414332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213414333	.	A	.	.	LowGQX	END=213414335	GT	./.
chr1	213414336	.	A	.	.	LowGQX	END=213414341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213414342	.	G	.	.	LowGQX	.	GT	./.
chr1	213414343	.	T	.	.	LowGQX	END=213414347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213414348	.	C	.	.	LowGQX	.	GT	./.
chr1	213414349	.	T	.	.	LowGQX	END=213414352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213414353	.	T	.	.	LowGQX	.	GT	./.
chr1	213414354	.	A	.	.	LowGQX	END=213414365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213414366	.	G	.	.	LowGQX	END=213414367	GT	./.
chr1	213414368	.	A	.	.	LowGQX	END=213414377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	213414378	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	213414379	.	G	.	.	LowGQX	END=213414387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	213414388	.	G	.	.	LowGQX	.	GT	./.
chr1	213414389	.	A	.	.	LowGQX	END=213414397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	213414398	.	G	.	.	LowGQX	END=213414400	GT	./.
chr1	213414401	.	T	.	.	LowGQX	END=213414414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	213414415	.	G	.	.	LowGQX	.	GT	./.
chr1	213414416	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	213414417	.	C	.	.	LowGQX	.	GT	./.
chr1	213414418	.	C	.	.	LowGQX	END=213414425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	213414426	.	A	.	.	LowGQX	.	GT	./.
chr1	213414427	.	G	.	.	LowGQX	END=213414433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	213414434	.	G	.	.	LowGQX	.	GT	./.
chr1	213414435	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	213414436	.	G	.	.	LowGQX	END=213414441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	213414442	.	T	.	.	LowGQX	.	GT	./.
chr1	213414443	.	G	.	.	LowGQX	END=213414449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	213414450	.	C	.	.	LowGQX	.	GT	./.
chr1	213414451	.	A	.	.	LowGQX	END=213414452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213414453	.	A	.	.	LowGQX	.	GT	./.
chr1	213414454	.	A	.	.	LowGQX	END=213414462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213414463	.	A	.	.	LowGQX	END=213414464	GT	./.
chr1	213414465	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213414466	.	C	.	.	LowGQX	.	GT	./.
chr1	213414467	.	T	.	.	LowGQX	END=213414468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213414469	.	C	.	.	LowGQX	END=213414470	GT	./.
chr1	213414471	.	C	.	.	LowGQX	END=213414478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213414479	.	C	.	.	LowGQX	END=213414480	GT	./.
chr1	213414481	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213414482	.	G	.	.	LowGQX	.	GT	./.
chr1	213414483	.	C	.	.	LowGQX	END=213414495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213414496	.	C	.	.	LowGQX	END=213414497	GT	./.
chr1	213414498	.	G	.	.	LowGQX	END=213414502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213414503	.	A	.	.	LowGQX	END=213414504	GT	./.
chr1	213414505	.	C	.	.	LowGQX	END=213414506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213414507	.	C	.	.	LowGQX	.	GT	./.
chr1	213414508	.	A	.	.	LowGQX	END=213414510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213414511	.	G	.	.	LowGQX	.	GT	./.
chr1	213414512	.	C	.	.	LowGQX	END=213414517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213414518	.	G	.	.	LowGQX	END=213415139	GT	./.
chr1	213415140	.	G	.	.	LowGQX	END=213415168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213415169	.	A	.	.	LowGQX	.	GT	./.
chr1	213415170	.	G	.	.	LowGQX	END=213415196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213415197	.	C	.	.	LowGQX	.	GT	./.
chr1	213415198	.	C	.	.	LowGQX	END=213415289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213415290	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	213415291	.	A	.	.	LowGQX	END=213415412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213415413	.	A	.	.	LowGQX	.	GT	./.
chr1	213415414	.	C	.	.	LowGQX	END=213415506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213415507	.	C	.	.	LowGQX	.	GT	./.
chr1	213415508	.	T	.	.	LowGQX	END=213415509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213415510	.	C	.	.	LowGQX	.	GT	./.
chr1	213415511	.	A	.	.	LowGQX	END=213415523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213415524	.	C	.	.	LowGQX	END=213415525	GT	./.
chr1	213415526	.	G	.	.	LowGQX	END=213415530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213415531	.	C	.	.	LowGQX	.	GT	./.
chr1	213415532	.	T	.	.	LowGQX	END=213415537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213415538	.	C	.	.	LowGQX	.	GT	./.
chr1	213415539	.	A	.	.	LowGQX	END=213415588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213415589	.	G	.	.	LowGQX	.	GT	./.
chr1	213415590	.	G	.	.	LowGQX	END=213415595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	213415596	.	T	.	.	LowGQX	END=213415693	GT	./.
chr1	213415907	.	T	.	.	LowGQX	END=213416006	GT	./.
chr1	213434893	.	G	.	.	LowGQX	END=213434992	GT	./.
chr1	213436062	.	A	.	.	LowGQX	END=213436161	GT	./.
chr1	213445865	.	A	.	.	LowGQX	END=213445979	GT	./.
chr1	214169877	.	T	.	.	LowGQX	END=214171416	GT	./.
chr1	214171417	.	A	.	.	LowGQX	END=214171422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214171423	.	A	.	.	LowGQX	.	GT	./.
chr1	214171424	.	G	.	.	LowGQX	END=214171439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214171440	.	C	.	.	LowGQX	.	GT	./.
chr1	214171441	.	C	.	.	LowGQX	END=214171443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214171444	.	G	.	.	LowGQX	.	GT	./.
chr1	214171445	.	A	.	.	LowGQX	END=214171484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214171485	.	A	.	.	LowGQX	.	GT	./.
chr1	214171486	.	C	.	.	LowGQX	END=214171501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214171502	.	C	.	.	LowGQX	END=214171503	GT	./.
chr1	214171504	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214171505	.	C	.	.	LowGQX	.	GT	./.
chr1	214171506	.	C	.	.	LowGQX	END=214171514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214171515	.	C	.	.	LowGQX	.	GT	./.
chr1	214171516	.	C	.	.	LowGQX	END=214171518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214171519	.	C	.	.	LowGQX	.	GT	./.
chr1	214171520	.	G	.	.	LowGQX	END=214171548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214171549	.	C	.	.	LowGQX	.	GT	./.
chr1	214171550	.	G	.	.	LowGQX	END=214171555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214171556	.	G	.	.	LowGQX	.	GT	./.
chr1	214171557	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214171558	.	C	.	.	LowGQX	.	GT	./.
chr1	214171559	.	G	.	.	LowGQX	END=214171567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214171568	.	G	.	.	LowGQX	END=214171605	GT	./.
chr1	214178506	.	A	.	.	LowGQX	END=214178617	GT	./.
chr1	214184862	.	A	.	.	LowGQX	END=214185060	GT	./.
chr1	214208990	.	A	.	.	LowGQX	END=214209179	GT	./.
chr1	214454585	.	C	.	.	LowGQX	END=214454795	GT	./.
chr1	214478512	.	G	.	.	LowGQX	END=214478611	GT	./.
chr1	214488103	.	A	.	.	LowGQX	END=214488115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214488116	.	G	.	.	LowGQX	.	GT	./.
chr1	214488117	.	C	.	.	LowGQX	END=214488133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214488134	.	A	.	.	LowGQX	.	GT	./.
chr1	214488135	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214488136	.	G	.	.	LowGQX	.	GT	./.
chr1	214488137	.	T	.	.	LowGQX	END=214488154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214488155	.	T	.	.	LowGQX	.	GT	./.
chr1	214488156	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214488157	.	G	.	.	LowGQX	END=214488158	GT	./.
chr1	214488159	.	G	.	.	LowGQX	END=214488168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214488169	.	A	.	.	LowGQX	.	GT	./.
chr1	214488170	.	T	.	.	LowGQX	END=214488172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214488173	.	C	.	.	LowGQX	.	GT	./.
chr1	214488174	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214488175	.	C	.	.	LowGQX	.	GT	./.
chr1	214488176	.	G	.	.	LowGQX	END=214488217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214491350	.	A	.	.	LowGQX	END=214491502	GT	./.
chr1	214492200	.	A	.	.	LowGQX	END=214492328	GT	./.
chr1	214497968	.	C	.	.	LowGQX	END=214498067	GT	./.
chr1	214500963	.	A	.	.	LowGQX	END=214501069	GT	./.
chr1	214503509	.	A	.	.	LowGQX	END=214503623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214504291	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	214504292	.	G	.	.	LowGQX	END=214504294	GT	./.
chr1	214504295	.	T	.	.	LowGQX	END=214504298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214504299	.	G	.	.	LowGQX	.	GT	./.
chr1	214504300	.	C	.	.	LowGQX	END=214504312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214504313	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	214504314	.	C	.	.	LowGQX	END=214504315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214504316	.	G	.	.	LowGQX	.	GT	./.
chr1	214504317	.	A	.	.	LowGQX	END=214504321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214504322	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	214504323	.	A	.	.	LowGQX	END=214504330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214504331	.	C	.	.	LowGQX	.	GT	./.
chr1	214504332	.	C	.	.	LowGQX	END=214504336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214504337	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	214504338	.	G	.	.	LowGQX	END=214504340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214504341	.	G	.	.	LowGQX	.	GT	./.
chr1	214504342	.	A	.	.	LowGQX	END=214504344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214504345	.	C	.	.	LowGQX	.	GT	./.
chr1	214504346	.	C	.	.	LowGQX	END=214504358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214504359	.	G	.	.	LowGQX	.	GT	./.
chr1	214504360	.	T	.	.	LowGQX	END=214504371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214504372	.	G	.	.	LowGQX	.	GT	./.
chr1	214504373	.	C	.	.	LowGQX	END=214504376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214504377	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	214504378	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214504379	.	C	.	.	LowGQX	.	GT	./.
chr1	214504380	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214504381	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	214504382	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214504383	.	G	.	.	LowGQX	.	GT	./.
chr1	214504384	.	A	.	.	LowGQX	END=214504415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214505359	.	A	.	.	LowGQX	END=214505537	GT	./.
chr1	214507541	.	A	.	.	LowGQX	END=214507600	GT	./.
chr1	214507601	.	C	.	.	LowGQX	END=214507653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214510038	.	T	.	.	LowGQX	END=214510137	GT	./.
chr1	214531263	.	G	.	.	PASS	END=214531313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	214531314	.	A	.	.	PASS	END=214531380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	214531381	.	G	.	.	PASS	END=214531395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	214537853	.	A	.	.	PASS	END=214537867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	214537868	.	A	.	.	PASS	END=214538004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	214538005	.	C	.	.	PASS	END=214538018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	214538019	.	C	.	.	PASS	END=214538020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	214542798	.	A	.	.	PASS	END=214542817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	214542818	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:136:99:60
chr1	214542819	.	T	C	4512.35	PASS	DP=136;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=8.5223;MQ=60;MQ0=0;QD=33.18;SB=-1932.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,135:136:99:4512,355,0:60:99:1.000
chr1	214542820	.	T	.	.	PASS	END=214542841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	214542842	.	A	.	.	PASS	END=214542989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	214542990	.	A	.	.	PASS	END=214543036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	214546012	.	T	.	.	PASS	END=214546033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	214546034	.	G	.	.	PASS	END=214546086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	214546087	.	T	.	.	PASS	END=214546178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	214546179	.	C	.	.	PASS	END=214546184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	214549560	.	A	.	.	PASS	END=214549579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	214549580	.	A	.	.	PASS	END=214549607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	214549608	.	G	.	.	PASS	END=214549735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	214549736	.	T	.	.	PASS	END=214549753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	214549754	.	T	.	.	PASS	END=214549781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	214549782	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:67:99:60
chr1	214551300	.	A	.	.	PASS	END=214551332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	214551333	.	A	.	.	PASS	END=214551362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	214551363	.	G	.	.	PASS	END=214551445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:81:60
chr1	214551446	.	C	.	.	PASS	END=214551447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	214556652	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	214556653	.	C	.	.	LowGQX	END=214556654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	214556655	.	C	.	.	PASS	END=214556657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	214556658	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	214556659	.	T	.	.	PASS	END=214556660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	214556661	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	214556662	.	T	.	.	PASS	END=214556663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	214556664	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	214556665	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	214556666	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	214556667	.	T	.	.	PASS	END=214556669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	214556670	.	C	.	.	LowGQX	END=214556671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	214556672	.	C	.	.	PASS	END=214556693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	214556694	.	G	.	.	LowGQX	END=214556695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	214556696	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	214556697	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	214556698	.	A	.	.	PASS	END=214556700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	214556701	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	214556702	.	T	.	.	PASS	END=214556715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	214556716	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:3:60
chr1	214556717	.	C	.	.	PASS	END=214556745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	214556746	.	C	.	.	PASS	END=214556758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	214556759	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:15:60
chr1	214556760	.	A	.	.	PASS	END=214556781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	214556782	.	G	.	.	PASS	END=214556788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:59
chr1	214556789	.	A	.	.	PASS	END=214556790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:59
chr1	214556791	.	A	.	.	PASS	END=214556793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:59
chr1	214556794	.	C	.	.	PASS	END=214556813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:59
chr1	214556814	.	T	.	.	PASS	END=214556816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:59
chr1	214556817	.	G	.	.	PASS	END=214556967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:59
chr1	214556968	.	T	.	.	PASS	END=214556971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	214556972	.	G	.	.	PASS	END=214557020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	214557021	.	A	.	.	PASS	END=214557034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	214557035	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:33:60
chr1	214557036	.	A	.	.	PASS	END=214557042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	214557043	.	C	.	.	PASS	END=214557056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	214557057	.	T	.	.	PASS	END=214557090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	214557091	.	T	.	.	PASS	END=214557096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	214557097	.	C	.	.	PASS	END=214557109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	214557110	.	C	.	.	PASS	END=214557116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	214557117	.	T	.	.	PASS	END=214557128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	214557129	.	G	.	.	PASS	END=214557134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	214557135	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:33:60
chr1	214557136	.	G	.	.	PASS	END=214557142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	214557143	.	C	.	.	PASS	END=214557146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	214557147	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:60
chr1	214557148	.	G	.	.	PASS	END=214557150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	214557151	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:60
chr1	214557152	.	G	.	.	PASS	END=214557167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	214557168	.	G	.	.	PASS	END=214557172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	214557173	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr1	214557174	.	C	.	.	PASS	END=214557189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	214557190	.	T	.	.	PASS	END=214557212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	214557213	.	T	.	.	PASS	END=214557215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	214557216	.	A	.	.	PASS	END=214557218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	214557219	.	G	.	.	PASS	END=214557241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	214557242	.	G	.	.	PASS	END=214557251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	214557252	.	A	.	.	PASS	END=214557266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	214557267	.	T	.	.	PASS	END=214557269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	214557270	.	A	.	.	PASS	END=214557274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chr1	214557275	.	G	.	.	PASS	END=214557280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	214557281	.	C	.	.	PASS	END=214557287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	214557288	.	A	.	.	PASS	END=214557292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	214557293	.	G	.	.	PASS	END=214557310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	214557311	.	C	.	.	PASS	END=214557324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:42:60
chr1	214557325	.	T	.	.	PASS	END=214557326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:39:60
chr1	214557327	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:19:60
chr1	214557328	.	C	.	.	PASS	END=214557339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:60
chr1	214557340	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:11:60
chr1	214557341	.	C	.	.	PASS	END=214557346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:60
chr1	214557347	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:14:60
chr1	214557348	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:39:60
chr1	214557349	.	C	.	.	PASS	END=214557351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:42:60
chr1	214557352	.	C	.	.	PASS	END=214557375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:60
chr1	214557376	.	T	.	.	PASS	END=214557391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr1	214557392	.	C	.	.	PASS	END=214557403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	214557404	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:3:60
chr1	214557405	.	A	.	.	PASS	END=214557417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	214557418	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:60
chr1	214557419	.	G	.	.	PASS	END=214557426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	214557427	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	214557428	.	G	.	.	PASS	END=214557431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	214557432	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	214557433	.	A	.	.	PASS	END=214557443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	214557444	.	T	.	.	LowGQX	END=214557445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	214557446	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	214557447	.	C	.	.	LowGQX	END=214557448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	214557449	.	G	.	.	LowGQX	END=214557455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	214557456	.	T	.	.	LowGQX	END=214557468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	214557469	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	214557470	.	G	.	.	LowGQX	END=214557472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	214557473	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	214557474	.	G	.	.	LowGQX	END=214557478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	214557479	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	214557480	.	G	.	.	LowGQX	END=214557481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	214557482	.	C	.	.	LowGQX	END=214557483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	214557484	.	G	.	.	LowGQX	END=214557488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	214557489	.	T	.	.	LowGQX	END=214557490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	214557491	.	G	.	.	LowGQX	END=214557493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	214557494	.	G	.	.	LowGQX	END=214557499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	214557500	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	214557501	.	G	.	.	LowGQX	END=214557514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	214557515	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	214557516	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	214557517	.	T	.	.	LowGQX	END=214557523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	214557524	.	C	.	.	LowGQX	END=214557534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	214557535	.	T	.	.	LowGQX	END=214557537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	214557538	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	214557539	.	G	.	.	LowGQX	END=214557541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	214557542	.	G	.	.	LowGQX	END=214557552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	214557553	.	C	.	.	PASS	END=214557556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	214557557	.	C	.	.	LowGQX	END=214557558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	214557559	.	G	.	.	PASS	END=214557560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	214557561	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	214557562	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	214557563	.	C	.	.	LowGQX	END=214557565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	214557566	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	214557567	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	214557568	.	T	.	.	PASS	END=214557573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	214557574	.	G	.	.	PASS	END=214557590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	214557591	.	G	.	.	PASS	END=214557598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	214557599	.	G	.	.	PASS	END=214557614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	214557615	.	G	.	.	PASS	END=214557617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	214557618	.	T	.	.	PASS	END=214557619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:51:60
chr1	214557620	.	G	.	.	PASS	END=214557629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	214557630	.	A	.	.	PASS	END=214557631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:51:60
chr1	214557632	.	A	.	.	PASS	END=214557707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	214557708	.	G	.	.	PASS	END=214557723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	214557724	.	C	.	.	PASS	END=214557740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	214557741	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:60:60
chr1	214557742	.	T	.	.	PASS	END=214557751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	214557752	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:68:60
chr1	214557753	.	T	.	.	PASS	END=214557766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	214557767	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:69:60
chr1	214557768	.	T	.	.	PASS	END=214557822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	214557823	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:75:60
chr1	214557824	.	A	.	.	PASS	END=214557855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	214557856	.	C	.	.	PASS	END=214557889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	214557890	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:60
chr1	214557891	.	A	.	.	PASS	END=214557907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	214557908	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:67:60
chr1	214557909	.	C	.	.	PASS	END=214557915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	214557916	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:63:60
chr1	214557917	.	C	.	.	PASS	END=214557944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	214557945	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:51:60
chr1	214557946	.	T	.	.	PASS	END=214557962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	214557963	.	T	.	.	PASS	END=214557969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	214557970	.	A	.	.	PASS	END=214558012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	214558013	.	G	.	.	PASS	END=214558033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	214558034	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:48:60
chr1	214558035	.	A	.	.	PASS	END=214558061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	214558062	.	A	.	.	PASS	END=214558092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	214558093	.	T	.	.	PASS	END=214558105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	214558106	.	T	.	.	PASS	END=214558107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:54:60
chr1	214558108	.	C	.	.	PASS	END=214558130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	214558131	.	T	.	.	PASS	END=214558133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	214560177	.	C	.	.	PASS	END=214560196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	214560197	.	G	.	.	PASS	END=214560276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	214564310	.	C	.	.	PASS	END=214564317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	214564318	.	C	.	.	PASS	END=214564330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	214564331	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr1	214564332	.	A	.	.	PASS	END=214564339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	214564340	.	T	C	1200.40	PASS	DP=40;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=6.6284;MQ=60;MQ0=0;QD=30.01;SB=-396.43	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,39:40:96.29:1233,96,0:60:96:1.000
chr1	214564341	.	C	.	.	PASS	END=214564390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	214564391	.	A	.	.	PASS	END=214564409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr1	214567030	.	T	.	.	PASS	END=214567040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	214567041	.	G	.	.	PASS	END=214567129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	214568170	.	A	.	.	PASS	END=214568207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	214568208	.	T	.	.	PASS	END=214568240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	214568241	.	C	.	.	PASS	END=214568317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	214568318	.	A	.	.	PASS	END=214568360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	214568361	.	A	.	.	PASS	END=214568386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	214568387	.	A	.	.	PASS	END=214568388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	214571251	.	A	C	2586.89	PASS	BaseQRankSum=2.255;DP=101;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=9.4692;MQ=60;MQ0=0;MQRankSum=0.646;QD=25.61;ReadPosRankSum=2.060;SB=-1492.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,99:101:99:2620,199,0:60:99:0.980
chr1	214571252	.	C	.	.	PASS	END=214571340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	214571341	.	T	.	.	PASS	END=214571350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	214575022	.	T	.	.	PASS	END=214575157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	214575158	.	G	.	.	PASS	END=214575169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	214575170	.	T	.	.	PASS	END=214575175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	214576212	.	T	.	.	PASS	END=214576257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	214576258	.	G	.	.	PASS	END=214576311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	214584955	.	A	.	.	PASS	END=214585024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	214585025	.	A	.	.	PASS	END=214585081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	214585082	.	T	.	.	PASS	END=214585110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	214587970	.	A	.	.	PASS	END=214588004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	214588005	.	G	.	.	PASS	END=214588071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	214625146	.	A	.	.	PASS	END=214625170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	214625171	.	T	.	.	PASS	END=214625296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:266:99:60
chr1	214625297	.	C	.	.	PASS	END=214625319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	214637971	.	A	.	.	PASS	END=214638007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	214638008	.	G	.	.	PASS	END=214638040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:279:99:60
chr1	214638041	.	T	.	.	PASS	END=214638109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:297:99:60
chr1	214638110	.	A	.	.	PASS	END=214638142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	214638143	.	G	.	.	PASS	END=214638148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	214787096	.	A	.	.	LowGQX	END=214787261	GT	./.
chr1	214788173	.	A	.	.	LowGQX	END=214788373	GT	./.
chr1	214791914	.	A	.	.	LowGQX	END=214792039	GT	./.
chr1	214792468	.	C	.	.	LowGQX	END=214792619	GT	./.
chr1	214793996	.	A	.	.	LowGQX	END=214794291	GT	./.
chr1	214795420	.	A	.	.	LowGQX	END=214795626	GT	./.
chr1	214802387	.	A	.	.	LowGQX	END=214802516	GT	./.
chr1	214803875	.	A	.	.	LowGQX	END=214804007	GT	./.
chr1	214805821	.	A	.	.	LowGQX	END=214805888	GT	./.
chr1	214805889	.	G	.	.	LowGQX	END=214805947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214811167	.	A	.	.	LowGQX	END=214811346	GT	./.
chr1	214813262	.	A	.	.	LowGQX	END=214813290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214813291	.	T	.	.	LowGQX	END=214813784	GT	./.
chr1	214813785	.	G	.	.	LowGQX	END=214813805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214813806	.	T	.	.	LowGQX	.	GT	./.
chr1	214813807	.	T	.	.	LowGQX	END=214813885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214813886	.	A	.	.	LowGQX	.	GT	./.
chr1	214813887	.	G	.	.	LowGQX	END=214814037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214814038	.	C	.	.	LowGQX	.	GT	./.
chr1	214814039	.	T	.	.	LowGQX	END=214814122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214814123	.	T	.	.	LowGQX	.	GT	./.
chr1	214814124	.	C	.	.	LowGQX	END=214814125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214814126	.	T	.	.	LowGQX	END=214815544	GT	./.
chr1	214815545	.	C	.	.	LowGQX	END=214815573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214815574	.	A	.	.	LowGQX	.	GT	./.
chr1	214815575	.	C	.	.	LowGQX	END=214815620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214815621	.	A	.	.	LowGQX	.	GT	./.
chr1	214815622	.	A	.	.	LowGQX	END=214815652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214815653	.	A	.	.	LowGQX	.	GT	./.
chr1	214815654	.	A	.	.	LowGQX	END=214815660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214815661	.	A	.	.	LowGQX	.	GT	./.
chr1	214815662	.	A	.	.	LowGQX	END=214815691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214815692	.	A	.	.	LowGQX	.	GT	./.
chr1	214815693	.	G	.	.	LowGQX	END=214815695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214815696	.	G	.	.	LowGQX	END=214815848	GT	./.
chr1	214815849	.	T	.	.	LowGQX	END=214815986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214815987	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	214815988	.	A	.	.	LowGQX	END=214815999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214816000	.	A	.	.	LowGQX	END=214816669	GT	./.
chr1	214817898	.	A	.	.	LowGQX	END=214818062	GT	./.
chr1	214818063	.	C	.	.	LowGQX	END=214818144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214818145	.	A	.	.	LowGQX	.	GT	./.
chr1	214818146	.	T	.	.	LowGQX	END=214818156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214818157	.	A	.	.	LowGQX	.	GT	./.
chr1	214818158	.	T	.	.	LowGQX	END=214818290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214818291	.	G	A	49.66	LowGQ;LowGQX	DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=16.55;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:6.02:81,6,0:60:6:1.000
chr1	214818292	.	T	.	.	LowGQX	END=214818328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214818329	.	G	.	.	LowGQX	.	GT	./.
chr1	214818330	.	A	.	.	LowGQX	END=214818331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214818332	.	T	.	.	LowGQX	END=214818333	GT	./.
chr1	214818334	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214818335	.	G	.	.	LowGQX	.	GT	./.
chr1	214818336	.	A	.	.	LowGQX	END=214818344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214818345	.	T	.	.	LowGQX	.	GT	./.
chr1	214818346	.	C	.	.	LowGQX	END=214818423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214818424	.	A	.	.	LowGQX	END=214818469	GT	./.
chr1	214818470	.	C	.	.	LowGQX	END=214818501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214818502	.	T	.	.	LowGQX	.	GT	./.
chr1	214818503	.	G	.	.	LowGQX	END=214818520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214818521	.	T	.	.	LowGQX	.	GT	./.
chr1	214818522	.	T	.	.	LowGQX	END=214818525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214818526	.	A	.	.	LowGQX	.	GT	./.
chr1	214818527	.	A	.	.	LowGQX	END=214818589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214818590	.	T	.	.	LowGQX	.	GT	./.
chr1	214818591	.	G	.	.	LowGQX	END=214818638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214818639	.	C	.	.	LowGQX	.	GT	./.
chr1	214818640	.	G	.	.	LowGQX	END=214818667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214818668	.	C	.	.	LowGQX	.	GT	./.
chr1	214818669	.	T	.	.	LowGQX	END=214818677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214818678	.	A	.	.	LowGQX	.	GT	./.
chr1	214818679	.	G	.	.	LowGQX	END=214818707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214818708	.	A	.	.	LowGQX	.	GT	./.
chr1	214818709	.	G	.	.	LowGQX	END=214818743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214818744	.	A	.	.	LowGQX	.	GT	./.
chr1	214818745	.	G	.	.	LowGQX	END=214818750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214818751	.	T	.	.	LowGQX	END=214818881	GT	./.
chr1	214818882	.	A	.	.	LowGQX	END=214818962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214818963	.	A	.	.	LowGQX	.	GT	./.
chr1	214818964	.	G	.	.	LowGQX	END=214819001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214819002	.	A	.	.	LowGQX	.	GT	./.
chr1	214819003	.	A	.	.	LowGQX	END=214819032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214819033	.	G	.	.	LowGQX	END=214819036	GT	./.
chr1	214819037	.	A	.	.	LowGQX	END=214819085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214819086	.	T	.	.	LowGQX	.	GT	./.
chr1	214819087	.	T	.	.	LowGQX	END=214819170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214819171	.	G	.	.	LowGQX	.	GT	./.
chr1	214819172	.	C	.	.	LowGQX	END=214819187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214819188	.	C	.	.	LowGQX	END=214820745	GT	./.
chr1	214821266	.	G	.	.	LowGQX	END=214821365	GT	./.
chr1	214821785	.	C	.	.	LowGQX	END=214821884	GT	./.
chr1	214822016	.	A	.	.	LowGQX	END=214822172	GT	./.
chr1	214825051	.	A	.	.	LowGQX	END=214825218	GT	./.
chr1	214825219	.	C	.	.	LowGQX	END=214825231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214826169	.	A	.	.	LowGQX	END=214826334	GT	./.
chr1	214826383	.	T	.	.	LowGQX	END=214826482	GT	./.
chr1	214828582	.	A	.	.	LowGQX	END=214828748	GT	./.
chr1	214830274	.	A	.	.	LowGQX	END=214830520	GT	./.
chr1	214830521	.	T	.	.	LowGQX	END=214830523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214830524	.	C	.	.	LowGQX	.	GT	./.
chr1	214830525	.	C	.	.	LowGQX	END=214830529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214830530	.	C	.	.	LowGQX	.	GT	./.
chr1	214830531	.	C	.	.	LowGQX	END=214830533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214830534	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	214830535	.	T	.	.	LowGQX	END=214830548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214830549	.	G	.	.	LowGQX	.	GT	./.
chr1	214830550	.	G	.	.	LowGQX	END=214830560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214830561	.	G	.	.	LowGQX	.	GT	./.
chr1	214830562	.	C	.	.	LowGQX	END=214830564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214830565	.	A	.	.	LowGQX	.	GT	./.
chr1	214830566	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	214830567	.	A	.	.	LowGQX	END=214830568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214830569	.	A	.	.	LowGQX	.	GT	./.
chr1	214830570	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214830571	.	A	.	.	LowGQX	.	GT	./.
chr1	214830572	.	G	.	.	LowGQX	END=214830580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214830581	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	214830582	.	A	.	.	LowGQX	END=214830584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214830585	.	G	.	.	LowGQX	END=214830586	GT	./.
chr1	214830587	.	C	.	.	LowGQX	END=214830595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214830596	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	214830597	.	G	.	.	LowGQX	END=214830601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214830602	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	214830603	.	T	.	.	LowGQX	END=214830608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214830609	.	A	.	.	LowGQX	.	GT	./.
chr1	214830610	.	G	.	.	LowGQX	END=214830614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214830615	.	G	.	.	LowGQX	.	GT	./.
chr1	214830616	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214830617	.	A	G	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	214830618	.	G	.	.	LowGQX	END=214830620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214830621	.	G	.	.	LowGQX	.	GT	./.
chr1	214830622	.	A	.	.	LowGQX	END=214830635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214830636	.	C	.	.	LowGQX	.	GT	./.
chr1	214830637	.	C	.	.	LowGQX	END=214830652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214830653	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	214830654	.	A	.	.	LowGQX	END=214830660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	214830661	.	C	.	.	LowGQX	.	GT	./.
chr1	214830662	.	A	.	.	LowGQX	END=214830678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214830679	.	T	.	.	LowGQX	.	GT	./.
chr1	214830680	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214830681	.	G	.	.	LowGQX	END=214830683	GT	./.
chr1	214830684	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	214830685	.	T	.	.	LowGQX	END=214830754	GT	./.
chr1	214832191	.	A	.	.	LowGQX	END=214832373	GT	./.
chr1	214836932	.	A	.	.	LowGQX	END=214837139	GT	./.
chr1	215179232	.	A	.	.	LowGQX	END=215179331	GT	./.
chr1	215256601	.	A	.	.	LowGQX	END=215256652	GT	./.
chr1	215256653	.	G	.	.	LowGQX	END=215256685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215256686	.	A	.	.	LowGQX	.	GT	./.
chr1	215256687	.	A	.	.	LowGQX	END=215256688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215256689	.	T	.	.	LowGQX	.	GT	./.
chr1	215256690	.	C	.	.	LowGQX	END=215256700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215256702	.	A	.	.	LowGQX	END=215256713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215256714	.	A	.	.	LowGQX	.	GT	./.
chr1	215256715	.	A	.	.	LowGQX	END=215256725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215256726	.	C	.	.	LowGQX	.	GT	./.
chr1	215256727	.	T	.	.	LowGQX	END=215256728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215256729	.	A	.	.	LowGQX	.	GT	./.
chr1	215256730	.	T	.	.	LowGQX	END=215256733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215256734	.	T	.	.	LowGQX	.	GT	./.
chr1	215256735	.	C	.	.	LowGQX	END=215256740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215256741	.	G	.	.	LowGQX	.	GT	./.
chr1	215256742	.	C	.	.	LowGQX	END=215256747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215256748	.	G	.	.	LowGQX	.	GT	./.
chr1	215256749	.	G	.	.	LowGQX	END=215256761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215256762	.	T	.	.	LowGQX	.	GT	./.
chr1	215256763	.	A	.	.	LowGQX	END=215256766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215256767	.	A	.	.	LowGQX	END=215256768	GT	./.
chr1	215256769	.	C	.	.	LowGQX	END=215256774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215256775	.	G	.	.	LowGQX	.	GT	./.
chr1	215256776	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215256777	.	G	.	.	LowGQX	END=215256801	GT	./.
chr1	215259709	.	A	.	.	LowGQX	END=215260023	GT	./.
chr1	215297914	.	T	.	.	LowGQX	END=215298095	GT	./.
chr1	215342540	.	A	.	.	LowGQX	END=215342729	GT	./.
chr1	215345338	.	A	.	.	LowGQX	END=215345419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	215345420	.	T	.	.	LowGQX	END=215345528	GT	./.
chr1	215368254	.	A	.	.	LowGQX	END=215368437	GT	./.
chr1	215408169	.	A	.	.	LowGQX	END=215408271	GT	./.
chr1	215408272	.	C	.	.	LowGQX	END=215408316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215408317	.	T	.	.	LowGQX	.	GT	./.
chr1	215408318	.	G	.	.	LowGQX	END=215408328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215408329	.	T	.	.	LowGQX	.	GT	./.
chr1	215408330	.	C	.	.	LowGQX	END=215408336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215408337	.	T	.	.	LowGQX	.	GT	./.
chr1	215408338	.	G	.	.	LowGQX	END=215408340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215408341	.	T	.	.	LowGQX	.	GT	./.
chr1	215408342	.	C	.	.	LowGQX	END=215408422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215408423	.	T	.	.	LowGQX	END=215408490	GT	./.
chr1	215740966	.	G	.	.	LowGQX	END=215741120	GT	./.
chr1	215747106	.	T	.	.	LowGQX	END=215747205	GT	./.
chr1	215747389	.	T	.	.	LowGQX	END=215747488	GT	./.
chr1	215749171	.	T	.	.	LowGQX	END=215749213	GT	./.
chr1	215749214	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215749215	.	T	.	.	LowGQX	.	GT	./.
chr1	215749216	.	G	.	.	LowGQX	END=215749272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215749273	.	T	.	.	LowGQX	.	GT	./.
chr1	215749274	.	G	.	.	LowGQX	END=215749317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215749318	.	G	.	.	LowGQX	.	GT	./.
chr1	215749319	.	T	.	.	LowGQX	END=215749325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215749326	.	T	.	.	LowGQX	.	GT	./.
chr1	215749327	.	G	.	.	LowGQX	END=215749349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215749350	.	T	.	.	LowGQX	.	GT	./.
chr1	215749351	.	A	.	.	LowGQX	END=215749363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215749364	.	T	.	.	LowGQX	END=215749381	GT	./.
chr1	215750993	.	C	.	.	LowGQX	END=215751018	GT	./.
chr1	215751019	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215751020	.	A	.	.	LowGQX	.	GT	./.
chr1	215751021	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215751022	.	T	.	.	LowGQX	.	GT	./.
chr1	215751023	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215751024	.	T	.	.	LowGQX	.	GT	./.
chr1	215751025	.	T	.	.	LowGQX	END=215751027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215751028	.	T	.	.	LowGQX	END=215751029	GT	./.
chr1	215751030	.	T	.	.	LowGQX	END=215751032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215751033	.	T	.	.	LowGQX	END=215751034	GT	./.
chr1	215751035	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215751036	.	G	.	.	LowGQX	END=215751037	GT	./.
chr1	215751038	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215751039	.	A	.	.	LowGQX	END=215751040	GT	./.
chr1	215751041	.	G	.	.	LowGQX	END=215751047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215751048	.	A	.	.	LowGQX	END=215751050	GT	./.
chr1	215751051	.	T	.	.	LowGQX	END=215751055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215751056	.	G	.	.	LowGQX	END=215751057	GT	./.
chr1	215751058	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215751059	.	A	.	.	LowGQX	END=215751060	GT	./.
chr1	215751061	.	C	.	.	LowGQX	END=215751063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215751064	.	T	.	.	LowGQX	.	GT	./.
chr1	215751065	.	C	.	.	LowGQX	END=215751082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	215751083	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	215751084	.	T	.	.	LowGQX	END=215751092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	215751331	.	G	.	.	LowGQX	END=215751375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215751376	.	C	.	.	LowGQX	END=215751430	GT	./.
chr1	215752291	.	A	.	.	LowGQX	END=215752519	GT	./.
chr1	215753248	.	A	.	.	LowGQX	END=215753347	GT	./.
chr1	215754253	.	A	.	.	LowGQX	END=215754412	GT	./.
chr1	215759836	.	A	.	.	LowGQX	END=215760030	GT	./.
chr1	215768696	.	A	.	.	LowGQX	END=215768815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215775203	.	C	.	.	LowGQX	END=215775302	GT	./.
chr1	215775425	.	A	.	.	LowGQX	END=215775545	GT	./.
chr1	215777472	.	A	.	.	LowGQX	END=215777646	GT	./.
chr1	215781357	.	A	.	.	LowGQX	END=215781516	GT	./.
chr1	215785115	.	A	.	.	LowGQX	END=215785265	GT	./.
chr1	215791404	.	A	.	.	LowGQX	END=215791503	GT	./.
chr1	215792216	.	T	.	.	LowGQX	END=215792242	GT	./.
chr1	215792243	.	G	.	.	LowGQX	END=215792258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792259	.	A	.	.	LowGQX	.	GT	./.
chr1	215792260	.	C	.	.	LowGQX	END=215792261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792262	.	A	.	.	LowGQX	.	GT	./.
chr1	215792263	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792264	.	A	.	.	LowGQX	.	GT	./.
chr1	215792265	.	T	.	.	LowGQX	END=215792280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792281	.	G	.	.	LowGQX	.	GT	./.
chr1	215792282	.	G	.	.	LowGQX	END=215792303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792304	.	A	.	.	LowGQX	.	GT	./.
chr1	215792305	.	T	.	.	LowGQX	END=215792312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792313	.	A	.	.	LowGQX	.	GT	./.
chr1	215792314	.	G	.	.	LowGQX	END=215792319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792320	.	G	.	.	LowGQX	.	GT	./.
chr1	215792321	.	G	.	.	LowGQX	END=215792326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792327	.	C	.	.	LowGQX	.	GT	./.
chr1	215792328	.	T	.	.	LowGQX	END=215792332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792333	.	C	.	.	LowGQX	.	GT	./.
chr1	215792334	.	A	.	.	LowGQX	END=215792345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792346	.	A	.	.	LowGQX	.	GT	./.
chr1	215792347	.	A	.	.	LowGQX	END=215792367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792368	.	A	.	.	LowGQX	.	GT	./.
chr1	215792369	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792370	.	C	.	.	LowGQX	.	GT	./.
chr1	215792371	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792372	.	G	.	.	LowGQX	.	GT	./.
chr1	215792373	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792374	.	C	.	.	LowGQX	.	GT	./.
chr1	215792375	.	C	.	.	LowGQX	END=215792383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792384	.	G	.	.	LowGQX	END=215792385	GT	./.
chr1	215792386	.	A	.	.	LowGQX	END=215792388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792389	.	T	.	.	LowGQX	.	GT	./.
chr1	215792390	.	G	.	.	LowGQX	END=215792393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792394	.	A	.	.	LowGQX	END=215792413	GT	./.
chr1	215792414	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792493	.	A	.	.	LowGQX	END=215792501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792502	.	T	.	.	LowGQX	.	GT	./.
chr1	215792503	.	G	.	.	LowGQX	END=215792509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792510	.	C	.	.	LowGQX	.	GT	./.
chr1	215792511	.	C	.	.	LowGQX	END=215792517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792518	.	G	.	.	LowGQX	.	GT	./.
chr1	215792519	.	A	.	.	LowGQX	END=215792549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792550	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	215792551	.	A	.	.	LowGQX	END=215792553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792554	.	A	.	.	LowGQX	.	GT	./.
chr1	215792555	.	C	.	.	LowGQX	END=215792563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215792564	.	G	.	.	LowGQX	END=215792635	GT	./.
chr1	215793397	.	A	.	.	LowGQX	END=215793458	GT	./.
chr1	215793459	.	T	.	.	LowGQX	END=215793471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793472	.	C	.	.	LowGQX	.	GT	./.
chr1	215793473	.	C	.	.	LowGQX	END=215793484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793485	.	G	.	.	LowGQX	.	GT	./.
chr1	215793486	.	G	.	.	LowGQX	END=215793501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793502	.	A	.	.	LowGQX	.	GT	./.
chr1	215793503	.	G	.	.	LowGQX	END=215793518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793519	.	G	.	.	LowGQX	END=215793520	GT	./.
chr1	215793521	.	A	.	.	LowGQX	END=215793525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793526	.	C	.	.	LowGQX	.	GT	./.
chr1	215793527	.	A	.	.	LowGQX	END=215793529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793530	.	C	.	.	LowGQX	.	GT	./.
chr1	215793531	.	T	.	.	LowGQX	END=215793540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793541	.	A	.	.	LowGQX	.	GT	./.
chr1	215793542	.	A	.	.	LowGQX	END=215793550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793551	.	T	.	.	LowGQX	END=215793552	GT	./.
chr1	215793553	.	G	.	.	LowGQX	END=215793557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793558	.	A	.	.	LowGQX	.	GT	./.
chr1	215793559	.	G	.	.	LowGQX	END=215793565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793566	.	C	.	.	LowGQX	.	GT	./.
chr1	215793567	.	T	.	.	LowGQX	END=215793569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793570	.	A	.	.	LowGQX	.	GT	./.
chr1	215793571	.	A	.	.	LowGQX	END=215793573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793574	.	G	.	.	LowGQX	END=215793575	GT	./.
chr1	215793576	.	T	.	.	LowGQX	END=215793577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793578	.	A	.	.	LowGQX	.	GT	./.
chr1	215793579	.	C	.	.	LowGQX	END=215793581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793582	.	G	.	.	LowGQX	.	GT	./.
chr1	215793583	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793584	.	G	.	.	LowGQX	END=215793585	GT	./.
chr1	215793586	.	C	.	.	LowGQX	END=215793588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793589	.	A	.	.	LowGQX	.	GT	./.
chr1	215793590	.	T	.	.	LowGQX	END=215793592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793593	.	A	.	.	LowGQX	END=215793595	GT	./.
chr1	215793596	.	C	.	.	LowGQX	END=215793605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793606	.	A	.	.	LowGQX	END=215793607	GT	./.
chr1	215793608	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793609	.	G	.	.	LowGQX	END=215793704	GT	./.
chr1	215793705	.	A	.	.	LowGQX	END=215793734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793735	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr1	215793736	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	215793737	.	C	.	.	LowGQX	END=215793823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	215793824	.	C	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	215793825	.	C	.	.	LowGQX	END=215793833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	215793834	.	G	A	91.36	LowGQ;LowGQX	DP=5;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=18.27;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,5:5:9.03:123,9,0:60:9:1.000
chr1	215793835	.	T	.	.	LowGQX	END=215793850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	215793851	.	C	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	215793852	.	C	.	.	LowGQX	END=215793883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	215793884	.	C	.	.	LowGQX	END=215793916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215793917	.	G	.	.	LowGQX	END=215793962	GT	./.
chr1	215799072	.	A	.	.	PASS	END=215799089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	215799090	.	A	.	.	PASS	END=215799120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:91:60
chr1	215799121	.	C	.	.	PASS	END=215799151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	215799152	.	G	.	.	PASS	END=215799227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	215799228	.	A	.	.	PASS	END=215799263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	215802105	.	T	.	.	PASS	END=215802134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr1	215802135	.	T	.	.	PASS	END=215802162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:307:99:60
chr1	215802163	.	C	.	.	PASS	END=215802351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:371:99:60
chr1	215802352	.	C	.	.	PASS	END=215802428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:305:99:60
chr1	215803517	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:54:60
chr1	215803518	.	C	.	.	PASS	END=215803525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	215803526	.	G	.	.	PASS	END=215803544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	215803545	.	T	.	.	LowGQX	END=215803546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	215803547	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	215803548	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	215803549	.	A	.	.	PASS	END=215803550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	215803551	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	215803552	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	215803553	.	T	.	.	LowGQX	END=215803557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	215803558	.	G	.	.	LowGQX	END=215803562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	215803563	.	C	.	.	LowGQX	END=215803588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	215803589	.	G	.	.	LowGQX	END=215803591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	215803592	.	A	.	.	LowGQX	END=215803593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	215803594	.	A	.	.	LowGQX	END=215803596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	215803597	.	G	.	.	LowGQX	END=215803601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	215803602	.	A	.	.	LowGQX	END=215803603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	215803604	.	T	.	.	LowGQX	END=215803607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	215803608	.	A	.	.	LowGQX	END=215803613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	215803614	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	215803615	.	G	.	.	LowGQX	END=215803616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	215807750	.	A	.	.	PASS	END=215807756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	215807757	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:60
chr1	215807758	.	A	.	.	PASS	END=215807772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	215807773	.	A	.	.	PASS	END=215807785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	215807786	.	C	.	.	PASS	END=215807814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	215807815	.	C	.	.	PASS	END=215807840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	215807841	.	A	.	.	PASS	END=215807862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	215807863	.	A	.	.	PASS	END=215807935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	215807936	.	C	.	.	PASS	END=215807965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	215807966	.	T	.	.	PASS	END=215807990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	215807991	.	T	.	.	PASS	END=215807997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	215807998	.	T	.	.	PASS	END=215808013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	215808014	.	C	.	.	PASS	END=215808032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	215808033	.	G	.	.	PASS	END=215808040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	215808041	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:39:60
chr1	215808042	.	A	.	.	PASS	END=215808048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	215808049	.	C	.	.	PASS	END=215808065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	215808066	.	A	.	.	PASS	END=215808076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	215808077	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:66:60
chr1	215808078	.	T	.	.	PASS	END=215808096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	215812446	.	T	.	.	PASS	END=215812464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	215812465	.	G	.	.	PASS	END=215812499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	215812500	.	G	.	.	PASS	END=215812544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	215812545	.	C	.	.	PASS	END=215812605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	215812606	.	T	.	.	PASS	END=215812631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	215813849	.	G	.	.	PASS	END=215813863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	215813864	.	G	.	.	PASS	END=215813865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	215813866	.	C	.	.	PASS	END=215813878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	215813879	.	A	.	.	PASS	END=215813898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	215813899	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:27:60
chr1	215813900	.	T	.	.	PASS	END=215813913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	215813914	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:33:60
chr1	215813915	.	T	.	.	PASS	END=215813921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	215813922	.	G	.	.	PASS	END=215813934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	215813935	.	T	.	.	PASS	END=215813945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	215813946	.	G	.	.	PASS	END=215813988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	215813989	.	T	.	.	PASS	END=215814059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	215814060	.	G	.	.	PASS	END=215814074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	215814075	.	C	.	.	PASS	END=215814088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	215814089	.	A	.	.	PASS	END=215814090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	215814091	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:54:60
chr1	215814092	.	T	.	.	PASS	END=215814099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	215814100	.	C	.	.	PASS	END=215814117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	215814118	.	T	.	.	PASS	END=215814124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	215814125	.	A	.	.	PASS	END=215814127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	215820813	.	C	.	.	PASS	END=215820815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	215820816	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	215820817	.	C	.	.	PASS	END=215820831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	215820832	.	T	.	.	PASS	END=215820846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	215820847	.	C	.	.	PASS	END=215820852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	215820853	.	C	.	.	PASS	END=215820877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	215820878	.	G	.	.	PASS	END=215820899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr1	215820900	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:66:60
chr1	215820901	.	C	.	.	PASS	END=215820929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:88:60
chr1	215820930	.	C	.	.	PASS	END=215820957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	215820958	.	G	.	.	PASS	END=215821025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	215821026	.	G	.	.	PASS	END=215821049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	215821050	.	C	.	.	PASS	END=215821080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	215821081	.	A	.	.	PASS	END=215821097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	215821098	.	T	.	.	PASS	END=215821105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	215821106	.	G	.	.	PASS	END=215821119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	215821120	.	T	.	.	PASS	END=215821123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	215821819	.	G	.	.	PASS	END=215821831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:54:60
chr1	215821832	.	C	.	.	PASS	END=215821838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	215821839	.	A	.	.	PASS	END=215821842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	215821843	.	T	.	.	PASS	END=215821860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	215821861	.	A	.	.	PASS	END=215821866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	215821867	.	T	.	.	PASS	END=215821891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	215821892	.	A	.	.	PASS	END=215821906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	215821907	.	A	.	.	PASS	END=215821935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	215821936	.	G	.	.	PASS	END=215821958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	215821959	.	T	.	.	PASS	END=215822034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	215822035	.	T	.	.	PASS	END=215822057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	215822058	.	G	.	.	PASS	END=215822089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	215822090	.	T	.	.	PASS	END=215822108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:60
chr1	215822109	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:54:60
chr1	215822110	.	T	.	.	PASS	END=215822125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	215822126	.	G	.	.	PASS	END=215822140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:63:60
chr1	215822141	.	T	.	.	PASS	END=215822142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	215822143	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:42:60
chr1	215822144	.	C	.	.	PASS	END=215822158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	215822159	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:48:60
chr1	215823883	.	T	.	.	PASS	END=215823929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	215823930	.	T	.	.	PASS	END=215824091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	215824092	.	T	.	.	PASS	END=215824108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	215824109	.	C	.	.	PASS	END=215824176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	215824177	.	A	.	.	PASS	END=215824191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	215824192	.	T	.	.	PASS	END=215824194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:61
chr1	215844263	.	C	.	.	PASS	END=215844305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	215844306	.	T	.	.	PASS	END=215844317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	215844318	.	T	.	.	PASS	END=215844326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr1	215844327	.	T	.	.	PASS	END=215844351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	215844352	.	C	.	.	PASS	END=215844384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	215844385	.	G	.	.	PASS	END=215844428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	215844429	.	T	.	.	PASS	END=215844482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	215844483	.	A	.	.	PASS	END=215844532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	215844533	.	T	.	.	PASS	END=215844555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:96:60
chr1	215844556	.	C	.	.	PASS	END=215844559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	215844560	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:66:60
chr1	215844561	.	T	.	.	PASS	END=215844577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	215844578	.	T	.	.	PASS	END=215844579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	215844580	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:69:60
chr1	215844581	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:27:60
chr1	215844582	.	C	.	.	PASS	END=215844606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	215844607	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:54:60
chr1	215844608	.	G	.	.	LowGQX	END=215844620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	215844621	.	A	.	.	LowGQX	END=215844623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	215844624	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	215844625	.	G	.	.	LowGQX	END=215844639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	215844640	.	A	.	.	LowGQX	END=215844647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	215844648	.	A	.	.	LowGQX	END=215844649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	215844650	.	G	.	.	LowGQX	END=215844652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215844653	.	G	.	.	LowGQX	.	GT	./.
chr1	215844654	.	A	.	.	LowGQX	END=215844655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215844656	.	A	.	.	LowGQX	END=215844657	GT	./.
chr1	215844658	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215844659	.	A	.	.	LowGQX	.	GT	./.
chr1	215844660	.	G	.	.	LowGQX	END=215844661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215844662	.	G	.	.	LowGQX	.	GT	./.
chr1	215844663	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215844664	.	T	.	.	LowGQX	END=215844665	GT	./.
chr1	215844666	.	T	.	.	LowGQX	END=215844669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215844670	.	G	.	.	LowGQX	.	GT	./.
chr1	215844671	.	C	.	.	LowGQX	END=215844674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215844675	.	A	.	.	LowGQX	.	GT	./.
chr1	215844676	.	T	.	.	LowGQX	END=215844677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215844678	.	G	.	.	LowGQX	END=215844681	GT	./.
chr1	215844682	.	T	.	.	LowGQX	END=215844684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	215844685	.	A	.	.	LowGQX	END=215844686	GT	./.
chr1	215847391	.	A	.	.	PASS	END=215847419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	215847420	.	A	.	.	PASS	END=215847433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	215847434	.	C	.	.	PASS	END=215847460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	215847461	.	G	.	.	PASS	END=215847466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	215847467	.	C	.	.	PASS	END=215847468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	215847469	.	A	.	.	PASS	END=215847501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	215847502	.	G	.	.	PASS	END=215847573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	215847574	.	C	.	.	PASS	END=215847620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	215847621	.	A	.	.	PASS	END=215847729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	215847730	.	G	.	.	PASS	END=215847747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	215847748	.	C	.	.	PASS	END=215847779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	215847780	.	T	.	.	PASS	END=215847796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:283:99:60
chr1	215847797	.	C	.	.	PASS	END=215847857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:361:99:60
chr1	215847858	.	T	.	.	PASS	END=215847938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:379:99:60
chr1	215847939	.	C	.	.	PASS	END=215847976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:287:99:60
chr1	215847977	.	T	.	.	PASS	END=215848004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:272:99:60
chr1	215848005	.	C	.	.	PASS	END=215848121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:341:99:60
chr1	215848122	.	T	.	.	PASS	END=215848150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:353:99:60
chr1	215848151	.	T	.	.	PASS	END=215848187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:268:99:60
chr1	215848188	.	A	.	.	PASS	END=215848207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	215848208	.	T	.	.	PASS	END=215848271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	215848272	.	G	.	.	PASS	END=215848457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	215848458	.	A	.	.	PASS	END=215848586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	215848587	.	T	C	3210.83	PASS	BaseQRankSum=-0.909;DP=255;Dels=0.00;FS=5.357;HRun=0;HaplotypeScore=14.3943;MQ=60;MQ0=0;MQRankSum=-0.402;QD=12.59;ReadPosRankSum=-0.754;SB=-1206.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:134,121:255:99:3241,0,3659:60:99:0.475
chr1	215848588	.	G	.	.	PASS	END=215848640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:60
chr1	215848641	.	T	C	7865.42	PASS	DP=288;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=24.8836;MQ=60;MQ0=0;QD=27.31;SB=-4746.74	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,287:288:99:7865,599,0:60:99:1.000
chr1	215848642	.	G	.	.	PASS	END=215848739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr1	215848740	.	A	.	.	PASS	END=215848759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	215848760	.	A	.	.	PASS	END=215848776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	215848777	.	A	.	.	PASS	END=215848821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	215848822	.	G	.	.	PASS	END=215848924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	215848925	.	A	.	.	PASS	END=215848958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	215848959	.	C	.	.	PASS	END=215849003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:86:60
chr1	215849004	.	T	.	.	PASS	END=215849009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	215853440	.	T	.	.	PASS	END=215853472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	215853473	.	A	.	.	PASS	END=215853475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	215853476	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:39:60
chr1	215853477	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:84:60
chr1	215853478	.	G	.	.	PASS	END=215853510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:87:60
chr1	215853511	.	T	.	.	PASS	END=215853520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	215853521	.	T	.	.	PASS	END=215853529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	215853530	.	T	.	.	PASS	END=215853550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	215853551	.	C	.	.	PASS	END=215853642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	215853643	.	G	.	.	PASS	END=215853671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	215853672	.	G	.	.	PASS	END=215853680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	215853681	.	G	.	.	PASS	END=215853690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	215853691	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:65:60
chr1	215853692	.	G	.	.	PASS	END=215853700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	215853701	.	G	.	.	PASS	END=215853717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	215853718	.	C	.	.	PASS	END=215853719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	215853720	.	T	.	.	PASS	END=215853724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	215853725	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:60
chr1	215853726	.	A	.	.	PASS	END=215853729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	215853730	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:54:60
chr1	215853731	.	T	.	.	PASS	END=215853733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	215853734	.	C	.	.	LowGQX	END=215853735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:27:60
chr1	215853736	.	G	.	.	PASS	END=215853744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	215853745	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	215853746	.	T	.	.	PASS	END=215853748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	215853748	.	GT	G	213.72	LowGQ;LowGQX;SB	BaseQRankSum=-1.086;DP=13;FS=0.000;HRun=12;HaplotypeScore=65.3940;MQ=60;MQ0=0;MQRankSum=-1.678;QD=16.44;ReadPosRankSum=-0.691;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:3,10:13:1.27:252,1,0:60:1:0.769
chr1	215853749	.	T	.	.	LowGQX	DP=13;MQ=60;MQ0=0	GT:AD:DP:MQ	.:3:3:60
chr1	215853750	.	T	.	.	PASS	END=215853763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	215853764	.	A	.	.	PASS	END=215853769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	215901321	.	A	.	.	PASS	END=215901364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	215901365	.	G	.	.	PASS	END=215901368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	215901369	.	T	.	.	PASS	END=215901383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:86:60
chr1	215901384	.	A	.	.	PASS	END=215901389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	215901390	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:75:60
chr1	215901391	.	A	.	.	PASS	END=215901406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	215901407	.	A	.	.	PASS	END=215901429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	215901430	.	T	.	.	PASS	END=215901444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	215901445	.	T	.	.	PASS	END=215901485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	215901486	.	A	.	.	PASS	END=215901590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	215901591	.	A	.	.	PASS	END=215901636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	215901637	.	G	.	.	PASS	END=215901646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	215901647	.	T	.	.	PASS	END=215901658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	215901659	.	C	.	.	PASS	END=215901685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	215901686	.	A	.	.	PASS	END=215901710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	215901711	.	A	.	.	PASS	END=215901721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	215901722	.	G	.	.	PASS	END=215901732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	215901733	.	G	.	.	PASS	END=215901750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	215901751	.	C	.	.	PASS	END=215901753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	215901754	.	T	.	.	PASS	END=215901765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	215901766	.	A	.	.	PASS	END=215901767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	215901768	.	T	.	.	PASS	END=215901773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	215901774	.	A	.	.	PASS	END=215901775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	215901776	.	A	.	.	PASS	END=215901777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	215914666	.	A	.	.	PASS	END=215914681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	215914682	.	A	.	.	PASS	END=215914720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	215914721	.	A	.	.	PASS	END=215914829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	215914830	.	G	.	.	PASS	END=215914866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	215914867	.	A	.	.	PASS	END=215914878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	215914879	.	C	.	.	PASS	END=215914883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	215914884	.	A	.	.	PASS	END=215914930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	215916468	.	A	.	.	PASS	END=215916530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	215916531	.	C	.	.	PASS	END=215916541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	215916542	.	A	.	.	PASS	END=215916584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	215916585	.	A	.	.	PASS	END=215916681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	215916682	.	A	.	.	PASS	END=215916692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	215916693	.	G	.	.	PASS	END=215916702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	215916703	.	A	.	.	PASS	END=215916728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	215931886	.	T	.	.	PASS	END=215931893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	215931894	.	A	.	.	PASS	END=215931902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	215931903	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:48:60
chr1	215931904	.	A	.	.	PASS	END=215931910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	215931911	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:75:60
chr1	215931912	.	A	.	.	PASS	END=215931927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	215931928	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:70:60
chr1	215931929	.	T	.	.	PASS	END=215931972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr1	215931973	.	C	.	.	PASS	END=215931990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	215931991	.	A	.	.	PASS	END=215932052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	215932053	.	C	.	.	PASS	END=215932061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	215932062	.	C	.	.	PASS	END=215932128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	215932129	.	C	.	.	PASS	END=215932130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:60
chr1	215932131	.	A	.	.	PASS	END=215932136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	215932137	.	A	.	.	PASS	END=215932141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	215932142	.	A	.	.	PASS	END=215932145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	215932951	.	A	.	.	PASS	END=215933000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	215933001	.	C	.	.	PASS	END=215933133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	215933134	.	A	.	.	PASS	END=215933191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	215933192	.	A	.	.	PASS	END=215933232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	215933233	.	A	.	.	PASS	END=215933236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	215939972	.	A	.	.	PASS	END=215940060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	215940061	.	T	.	.	PASS	END=215940101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	215940102	.	G	.	.	PASS	END=215940161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:60
chr1	215940162	.	C	.	.	PASS	END=215940174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	215940175	.	T	.	.	PASS	END=215940181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	215953134	.	C	.	.	PASS	END=215953148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	215953149	.	C	.	.	PASS	END=215953183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	215953184	.	C	.	.	PASS	END=215953219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	215953220	.	G	.	.	PASS	END=215953294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	215953295	.	C	.	.	PASS	END=215953324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	215953325	.	G	.	.	PASS	END=215953340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	215953341	.	G	.	.	PASS	END=215953368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	215953369	.	A	.	.	PASS	END=215953379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	215953380	.	C	.	.	PASS	END=215953391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	215953392	.	G	.	.	PASS	END=215953430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr1	215953431	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:15:60
chr1	215953432	.	T	.	.	PASS	END=215953434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:54:60
chr1	215955333	.	T	.	.	PASS	END=215955379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	215955380	.	T	.	.	PASS	END=215955484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	215955485	.	T	.	.	PASS	END=215955589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	215956029	.	C	.	.	PASS	END=215956088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	215956089	.	G	.	.	PASS	END=215956154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	215956155	.	G	.	.	PASS	END=215956187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	215956188	.	T	.	.	PASS	END=215956221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	215956222	.	G	.	.	PASS	END=215956233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	215956234	.	A	.	.	PASS	END=215956248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	215956249	.	A	.	.	PASS	END=215956261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:77:60
chr1	215956262	.	G	.	.	PASS	END=215956263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	215956264	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:21:60
chr1	215956265	.	T	.	.	PASS	END=215956270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	215956271	.	T	.	.	PASS	END=215956272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	215956273	.	C	.	.	PASS	END=215956278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	215956279	.	T	.	.	PASS	END=215956283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	215956284	.	A	.	.	PASS	END=215956286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	215956287	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	215956288	.	A	.	.	PASS	END=215956290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	215956291	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	215956292	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	215956293	.	A	.	.	LowGQX	END=215956294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	215956295	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	215956296	.	G	.	.	LowGQX	END=215956298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	215956299	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	215956300	.	G	.	.	LowGQX	END=215956301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	215956302	.	G	.	.	PASS	END=215956303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	215956304	.	A	G	24.58	LowGQX;SB	BaseQRankSum=-0.248;DP=11;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=4.7873;MQ=60;MQ0=0;MQRankSum=-0.573;QD=2.23;ReadPosRankSum=-0.248;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:6,3:11:54.55:55,0,201:60:25:0.333
chr1	215956305	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	215956306	.	T	.	.	PASS	END=215956307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	215956308	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:0:60
chr1	215956309	.	C	.	.	PASS	END=215956311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	215956312	.	T	.	.	LowGQX	END=215956313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	215956314	.	A	.	.	PASS	END=215956316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	215956317	.	T	.	.	LowGQX	END=215956319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	215956320	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	215956321	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	215956322	.	T	.	.	PASS	END=215956323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	215956324	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	215956325	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	215956326	.	T	.	.	LowGQX	END=215956327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	215956328	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	215959961	.	G	.	.	PASS	END=215959969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	215959970	.	T	.	.	PASS	END=215959973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	215959974	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:75:60
chr1	215959975	.	C	.	.	PASS	END=215960011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	215960012	.	C	.	.	PASS	END=215960019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	215960020	.	G	.	.	PASS	END=215960036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	215960037	.	C	.	.	PASS	END=215960097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	215960098	.	G	.	.	PASS	END=215960164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	215960165	.	G	.	.	PASS	END=215960166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	215960167	.	T	G	1032.30	PASS	BaseQRankSum=0.405;DP=109;Dels=0.00;FS=4.032;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=-0.219;QD=9.47;ReadPosRankSum=-0.985;SB=-312.65	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:65,44:109:99:1062,0,1571:60:99:0.404
chr1	215960168	.	C	.	.	PASS	END=215960185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	215960186	.	C	.	.	PASS	END=215960210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	215960211	.	G	.	.	PASS	END=215960235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	215960236	.	T	.	.	PASS	END=215960241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	215960242	.	A	.	.	PASS	END=215960245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	215960246	.	A	.	.	PASS	END=215960257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	215960258	.	A	.	.	PASS	END=215960267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	215963350	.	T	.	.	PASS	END=215963384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr1	215963385	.	C	.	.	PASS	END=215963434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:305:99:60
chr1	215963435	.	C	.	.	PASS	END=215963554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:402:99:60
chr1	215963555	.	T	.	.	PASS	END=215963583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:321:99:60
chr1	215963584	.	A	.	.	PASS	END=215963615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr1	215963616	.	A	.	.	PASS	END=215963653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	215963654	.	T	.	.	PASS	END=215963675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	215972198	.	C	.	.	PASS	END=215972213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	215972214	.	C	.	.	PASS	END=215972242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:96:60
chr1	215972243	.	C	.	.	PASS	END=215972259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	215972260	.	T	.	.	PASS	END=215972291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	215972292	.	C	.	.	PASS	END=215972319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	215972320	.	C	.	.	PASS	END=215972409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	215972410	.	G	.	.	PASS	END=215972441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	215972442	.	C	.	.	PASS	END=215972465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	215972466	.	A	.	.	PASS	END=215972492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	215972493	.	A	.	.	PASS	END=215972518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	215987025	.	T	.	.	PASS	END=215987041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	215987042	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:51:60
chr1	215987043	.	C	.	.	PASS	END=215987059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	215987060	.	C	.	.	PASS	END=215987075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	215987076	.	A	.	.	PASS	END=215987098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	215987099	.	A	.	.	PASS	END=215987151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	215987152	.	C	.	.	PASS	END=215987226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	215987227	.	A	.	.	PASS	END=215987246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	215987247	.	C	.	.	PASS	END=215987297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	215990288	.	G	.	.	PASS	END=215990323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	215990324	.	T	.	.	PASS	END=215990331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	215990332	.	G	.	.	PASS	END=215990339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	215990340	.	T	.	.	PASS	END=215990388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	215990389	.	G	.	.	PASS	END=215990392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	215990393	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:51:60
chr1	215990394	.	C	.	.	PASS	END=215990434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	215990435	.	C	.	.	PASS	END=215990455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	215990456	.	A	.	.	PASS	END=215990548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	215990549	.	A	.	.	PASS	END=215990561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	215990562	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:69:60
chr1	215990563	.	T	.	.	PASS	END=215990573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	215990574	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:63:60
chr1	215990575	.	A	.	.	PASS	END=215990586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr1	215990587	.	T	.	.	PASS	END=215990588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	216011282	.	C	.	.	PASS	END=216011294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:79:60
chr1	216011295	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:76:60
chr1	216011296	.	A	.	.	PASS	END=216011378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:91:60
chr1	216011379	.	T	.	.	PASS	END=216011398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	216011399	.	T	.	.	PASS	END=216011404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	216011405	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:42:60
chr1	216011406	.	C	.	.	PASS	END=216011430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	216011431	.	T	.	.	PASS	END=216011437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	216011438	.	A	.	.	PASS	END=216011452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	216011453	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:1:60
chr1	216011454	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	216011455	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	216011456	.	T	.	.	LowGQX	END=216011458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	216011459	.	T	.	.	PASS	END=216011461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	216011462	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	216011463	.	G	.	.	PASS	END=216011474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	216011475	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:60
chr1	216011476	.	C	.	.	PASS	END=216011477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	216011478	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	216011479	.	C	.	.	PASS	END=216011483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	216011484	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	216011485	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	216011486	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	216011487	.	G	.	.	PASS	END=216011496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	216017585	.	G	.	.	PASS	END=216017600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	216017601	.	C	.	.	PASS	END=216017641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	216017642	.	G	.	.	PASS	END=216017652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	216017653	.	T	.	.	PASS	END=216017682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	216017683	.	A	.	.	PASS	END=216017791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	216017792	.	T	.	.	PASS	END=216017804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	216017805	.	A	.	.	PASS	END=216017824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	216017825	.	C	.	.	PASS	END=216017883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	216017884	.	A	.	.	PASS	END=216017889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	216019115	.	T	.	.	LowGQX	END=216019118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	216019119	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	216019120	.	T	.	.	LowGQX	END=216019127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	216019128	.	C	.	51.06	LowGQX	DP=10;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:21.07:60:21
chr1	216019129	.	A	.	.	LowGQX	END=216019132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	216019133	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	216019134	.	T	.	.	LowGQX	END=216019138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	216019139	.	C	.	.	PASS	END=216019141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	216019142	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	216019143	.	T	.	.	PASS	END=216019168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	216019169	.	C	.	.	PASS	END=216019177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	216019178	.	T	.	.	PASS	END=216019183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	216019184	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:33:60
chr1	216019185	.	A	.	.	PASS	END=216019189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	216019190	.	G	.	.	PASS	END=216019195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	216019196	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:9:60
chr1	216019197	.	A	.	.	PASS	END=216019205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	216019206	.	G	.	.	PASS	END=216019215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	216019216	.	C	.	.	PASS	END=216019232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	216019233	.	A	.	.	PASS	END=216019254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	216019255	.	G	.	.	PASS	END=216019330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	216019330	.	CA	C	1152.50	PASS	BaseQRankSum=6.057;DP=81;FS=0.849;HRun=6;HaplotypeScore=232.7879;MQ=60;MQ0=0;MQRankSum=-0.544;QD=14.23;ReadPosRankSum=1.102;SB=-504.98	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:43,38:81:99:1192,0,1179:60:99:0.469
chr1	216019331	.	A	.	74.94	PASS	DP=82;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:43:44:44.95:60:45
chr1	216019332	.	A	.	.	PASS	END=216019336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	216019337	.	G	T	782.48	PASS	BaseQRankSum=0.397;DP=82;Dels=0.01;FS=3.301;HRun=1;HaplotypeScore=45.2692;MQ=60;MQ0=0;MQRankSum=0.397;QD=9.54;ReadPosRankSum=1.358;SB=-475.03	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:40,39:81:99:812,0,936:60:99:0.494
chr1	216019338	.	T	.	.	PASS	END=216019366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	216019367	.	C	.	.	PASS	END=216019386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	216019387	.	A	.	.	PASS	END=216019401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	216019402	.	T	.	.	PASS	END=216019413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	216019414	.	A	.	.	PASS	END=216019416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	216019417	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:21:60
chr1	216019418	.	T	.	.	PASS	END=216019420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	216019421	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:48:60
chr1	216019422	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:63:60
chr1	216019423	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:48:60
chr1	216019424	.	G	.	.	PASS	END=216019425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	216019426	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:48:60
chr1	216040298	.	T	.	.	PASS	END=216040312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	216040313	.	A	.	.	PASS	END=216040318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	216040319	.	T	.	.	PASS	END=216040328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	216040329	.	G	.	.	PASS	END=216040339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	216040340	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:54:60
chr1	216040341	.	T	.	.	PASS	END=216040361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:60
chr1	216040362	.	C	.	.	PASS	END=216040436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	216040437	.	T	.	.	PASS	END=216040482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	216040483	.	A	.	.	PASS	END=216040501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	216040502	.	A	.	.	PASS	END=216040563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	216051049	.	A	.	.	PASS	END=216051081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	216051082	.	T	C	681.56	PASS	BaseQRankSum=0.169;DP=54;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-0.009;QD=12.62;ReadPosRankSum=0.169;SB=-193.41	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,27:54:99:712,0,727:60:99:0.509
chr1	216051083	.	A	.	.	PASS	END=216051112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	216051113	.	T	.	.	PASS	END=216051156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	216051157	.	C	T	926.78	PASS	BaseQRankSum=2.856;DP=82;Dels=0.00;FS=0.869;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=0.918;QD=11.30;ReadPosRankSum=0.185;SB=-568.06	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:41,41:82:99:957,0,1025:60:99:0.500
chr1	216051158	.	G	.	.	PASS	END=216051234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	216051235	.	A	.	.	PASS	END=216051257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	216051258	.	C	.	.	PASS	END=216051271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	216051272	.	A	.	.	PASS	END=216051273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr1	216052055	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr1	216052056	.	A	.	.	LowGQX	END=216052060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	216052061	.	G	.	.	PASS	END=216052067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	216052068	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	216052069	.	C	.	.	PASS	END=216052072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	216052073	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	216052074	.	G	.	.	PASS	END=216052100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	216052101	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:3:60
chr1	216052102	.	T	.	.	PASS	END=216052106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	216052107	.	T	.	.	LowGQX	END=216052118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	216052119	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	216052120	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	216052121	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	216052122	.	T	.	.	LowGQX	END=216052123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	216052124	.	G	.	.	PASS	END=216052132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	216052133	.	G	.	.	PASS	END=216052136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	216052137	.	G	.	.	PASS	END=216052153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	216052154	.	A	.	.	PASS	END=216052174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	216052175	.	A	.	.	PASS	END=216052190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	216052191	.	C	.	.	PASS	END=216052204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	216052205	.	A	.	.	PASS	END=216052216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	216052217	.	G	.	.	PASS	END=216052240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	216052241	.	T	.	.	PASS	END=216052262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	216052263	.	C	.	.	PASS	END=216052356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	216052357	.	G	.	.	PASS	END=216052382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	216052383	.	T	.	.	PASS	END=216052404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	216052405	.	G	.	.	PASS	END=216052414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	216052415	.	T	.	.	PASS	END=216052424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	216052425	.	G	.	.	PASS	END=216052471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	216052472	.	G	.	.	PASS	END=216052477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	216052478	.	A	.	.	PASS	END=216052486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	216052487	.	G	.	.	PASS	END=216052491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	216061717	.	C	.	.	PASS	END=216061754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	216061755	.	G	.	.	PASS	END=216061764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	216061765	.	T	.	.	PASS	END=216061790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	216061791	.	C	.	.	PASS	END=216061811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	216061812	.	C	.	.	PASS	END=216061856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	216061857	.	T	.	.	PASS	END=216061881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	216061882	.	G	.	.	PASS	END=216061904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:249:99:60
chr1	216061905	.	A	.	.	PASS	END=216061991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:312:99:60
chr1	216061992	.	C	.	.	PASS	END=216062054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:350:99:60
chr1	216062055	.	G	.	.	PASS	END=216062152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:291:99:60
chr1	216062153	.	T	.	.	PASS	END=216062220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	216062221	.	T	.	.	PASS	END=216062232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	216062233	.	T	.	.	PASS	END=216062274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	216062275	.	G	.	.	PASS	END=216062324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	216062325	.	G	.	.	PASS	END=216062356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	216062357	.	T	.	.	PASS	END=216062368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	216062369	.	A	.	.	PASS	END=216062373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	216062374	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:75:60
chr1	216062375	.	G	.	.	PASS	END=216062396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr1	216062397	.	C	.	.	PASS	END=216062438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:78:60
chr1	216062439	.	T	.	.	PASS	END=216062447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	216073366	.	T	.	.	PASS	END=216073387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	216073388	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:38:60
chr1	216073389	.	T	.	.	PASS	END=216073396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:60
chr1	216073397	.	G	.	.	PASS	END=216073411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr1	216073412	.	C	.	.	PASS	END=216073499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:97:60
chr1	216073500	.	G	.	.	PASS	END=216073537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	216073538	.	T	.	.	PASS	END=216073567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:93:60
chr1	216073568	.	G	.	.	PASS	END=216073610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	216074046	.	T	.	.	PASS	END=216074053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	216074054	.	T	.	.	PASS	END=216074058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	216074059	.	T	.	.	PASS	END=216074078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	216074079	.	A	.	.	PASS	END=216074091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	216074092	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:36:60
chr1	216074093	.	T	.	.	PASS	END=216074097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	216074098	.	C	.	.	PASS	END=216074136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	216074137	.	G	.	.	PASS	END=216074170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	216074171	.	A	.	.	PASS	END=216074231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	216074232	.	A	.	.	PASS	END=216074279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:79:60
chr1	216074280	.	A	.	.	PASS	END=216074298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	216107907	.	A	.	.	PASS	END=216107913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	216107914	.	G	.	.	PASS	END=216107926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	216107927	.	A	.	.	PASS	END=216107944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	216107945	.	T	.	.	PASS	END=216107956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	216107957	.	C	.	.	PASS	END=216107969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	216107970	.	T	.	.	PASS	END=216107990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	216107991	.	T	.	.	PASS	END=216108110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	216108111	.	C	.	.	PASS	END=216108137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	216108138	.	C	.	.	PASS	END=216108174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	216108175	.	T	.	.	PASS	END=216108188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	216138608	.	A	.	.	PASS	END=216138666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	216138667	.	A	.	.	PASS	END=216138735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	216138736	.	C	.	.	PASS	END=216138812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:79:60
chr1	216138813	.	A	.	.	PASS	END=216138817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:96:60
chr1	216138818	.	C	.	.	PASS	END=216138825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	216138826	.	G	.	.	PASS	END=216138836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	216138837	.	G	.	.	PASS	END=216138848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	216138849	.	T	.	.	PASS	END=216138852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	216138853	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:30:60
chr1	216138854	.	A	.	.	PASS	END=216138872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	216143916	.	A	.	.	PASS	END=216143927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	216143928	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr1	216143929	.	A	.	.	PASS	END=216143949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	216143950	.	T	.	.	PASS	END=216143972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	216143973	.	G	.	.	PASS	END=216143984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	216143985	.	A	.	.	PASS	END=216144009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	216144010	.	C	.	.	PASS	END=216144088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	216144089	.	C	.	.	PASS	END=216144126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	216144127	.	A	.	.	PASS	END=216144147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	216144148	.	G	.	.	PASS	END=216144158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	216144159	.	A	.	.	PASS	END=216144169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	216166311	.	T	.	.	PASS	END=216166343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	216166344	.	C	.	.	PASS	END=216166360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	216166361	.	C	.	.	PASS	END=216166405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	216166406	.	G	.	.	PASS	END=216166484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	216166485	.	C	.	.	PASS	END=216166507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	216166508	.	G	.	.	PASS	END=216166530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	216166531	.	C	.	.	PASS	END=216166560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	216172178	.	G	.	.	PASS	END=216172184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:66:60
chr1	216172185	.	A	.	.	PASS	END=216172193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:60
chr1	216172194	.	A	.	.	PASS	END=216172206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	216172207	.	A	.	.	PASS	END=216172309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:60
chr1	216172310	.	G	.	.	PASS	END=216172341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	216172342	.	T	.	.	PASS	END=216172357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	216172358	.	A	.	.	PASS	END=216172363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	216172364	.	T	.	.	PASS	END=216172369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	216172370	.	A	.	.	LowGQX	END=216172371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	216172372	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:0:60
chr1	216172373	.	C	.	.	LowGQX	END=216172376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	216172377	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	216172378	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	216172379	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	216172380	.	A	G	141.94	PASS	BaseQRankSum=0.259;DP=12;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9997;MQ=60;MQ0=0;MQRankSum=0.583;QD=11.83;ReadPosRankSum=0.869;SB=-30.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:6,6:12:99:172,0,172:60:99:0.500
chr1	216172381	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	216172382	.	T	.	.	PASS	END=216172393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	216172394	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	216172395	.	T	.	.	PASS	END=216172396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	216172397	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	216172398	.	C	.	.	PASS	END=216172399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	216172400	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	216172401	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	216172402	.	T	.	.	LowGQX	END=216172422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	216172423	.	T	.	.	LowGQX	END=216172427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	216172428	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	216172429	.	T	.	.	LowGQX	END=216172434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	216172435	.	C	.	.	LowGQX	END=216172439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	216172440	.	C	.	4.58	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.01:60:0
chr1	216172441	.	A	.	.	LowGQX	END=216172444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	216172445	.	C	.	6.76	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.02:60:0
chr1	216172446	.	T	.	.	LowGQX	END=216172451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	216173694	.	C	.	.	PASS	END=216173715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	216173716	.	C	.	.	PASS	END=216173743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	216173744	.	C	.	.	PASS	END=216173764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	216173765	.	A	.	.	PASS	END=216173837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	216173838	.	C	.	.	PASS	END=216173895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	216173896	.	C	.	.	PASS	END=216173945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	216173946	.	T	.	.	PASS	END=216173955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	216219722	.	T	.	.	PASS	END=216219735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	216219736	.	G	.	.	PASS	END=216219759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	216219760	.	C	.	.	PASS	END=216219778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	216219779	.	C	.	.	PASS	END=216219780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	216219781	.	A	G	4374.60	PASS	DP=144;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=10.4689;MQ=60;MQ0=0;QD=30.38;SB=-1654.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,144:144:99:4375,334,0:60:99:1.000
chr1	216219782	.	T	.	.	PASS	END=216219806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	216219807	.	G	.	.	PASS	END=216219907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	216219908	.	C	.	.	PASS	END=216219931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	216219932	.	G	.	.	PASS	END=216219957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	216219958	.	G	.	.	PASS	END=216219985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	216221825	.	T	.	.	PASS	END=216221884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	216221885	.	G	.	.	PASS	END=216221928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	216221929	.	A	.	.	PASS	END=216221938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	216221939	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:68:57:60
chr1	216221940	.	A	.	.	PASS	END=216221972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	216221973	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:70:60
chr1	216221974	.	A	.	.	PASS	END=216221996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr1	216221997	.	A	.	.	PASS	END=216222012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	216222013	.	G	.	.	PASS	END=216222031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	216222032	.	A	.	.	PASS	END=216222036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	216222037	.	C	.	.	PASS	END=216222040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	216243392	.	C	.	.	LowGQX	END=216243395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	216243396	.	C	.	.	LowGQX	END=216243401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	216243402	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	216243403	.	G	.	.	LowGQX	END=216243413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	216243414	.	G	.	.	PASS	END=216243422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:60
chr1	216243423	.	T	.	.	PASS	END=216243434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	216243435	.	G	.	.	PASS	END=216243449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	216243450	.	G	.	.	PASS	END=216243465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	216243466	.	A	.	.	PASS	END=216243474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	216243475	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:52:60
chr1	216243476	.	T	.	.	PASS	END=216243490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	216243491	.	G	.	.	PASS	END=216243511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	216243512	.	C	.	.	PASS	END=216243560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	216243561	.	T	.	.	PASS	END=216243598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	216243599	.	T	.	.	PASS	END=216243621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	216243622	.	A	.	.	PASS	END=216243644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	216243645	.	A	.	.	PASS	END=216243660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	216243661	.	G	.	.	PASS	END=216243680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	216243681	.	A	.	.	PASS	END=216243683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	216243684	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:18:60
chr1	216243685	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:69:60
chr1	216246180	.	A	.	.	PASS	END=216246188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	216246189	.	A	.	.	PASS	END=216246201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	216246202	.	C	.	.	PASS	END=216246238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	216246239	.	G	.	.	PASS	END=216246264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	216246265	.	A	.	.	PASS	END=216246362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	216246388	.	G	.	.	PASS	END=216246551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	216246552	.	A	.	.	PASS	END=216246578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	216246579	.	A	.	.	PASS	END=216246598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:78:60
chr1	216246599	.	A	.	.	PASS	END=216246629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:84:60
chr1	216246630	.	C	.	.	PASS	END=216246641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:77:60
chr1	216246642	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr1	216246643	.	C	.	.	PASS	END=216246653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	216246654	.	T	.	.	PASS	END=216246667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	216246668	.	C	.	.	PASS	END=216246675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	216246675	.	AG	A	357.14	SB	BaseQRankSum=-0.151;DP=22;FS=0.000;HRun=3;HaplotypeScore=44.2383;MQ=60;MQ0=0;MQRankSum=-0.754;QD=16.23;ReadPosRankSum=1.357;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:10,11:22:99:396,0,192:60:99:0.524
chr1	216246676	.	G	.	57.07	LowGQX	DP=21;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:10:10:27.07:60:27
chr1	216246677	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:60:60
chr1	216246678	.	G	.	.	PASS	END=216246682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	216246683	.	A	.	.	PASS	END=216246693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	216251380	.	T	.	.	PASS	END=216251396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	216251397	.	T	.	.	PASS	END=216251428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr1	216251429	.	A	.	.	PASS	END=216251573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:314:99:60
chr1	216251574	.	G	.	.	PASS	END=216251645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr1	216251646	.	T	.	.	PASS	END=216251731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	216251732	.	G	.	.	PASS	END=216251755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	216256747	.	A	.	.	PASS	END=216256759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	216256760	.	A	.	.	PASS	END=216256806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	216256807	.	A	.	.	PASS	END=216256818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	216256819	.	T	.	.	PASS	END=216256937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	216256938	.	T	.	.	PASS	END=216256959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	216256960	.	T	.	.	PASS	END=216256972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	216256973	.	A	.	.	PASS	END=216256979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	216257989	.	G	.	.	PASS	END=216258044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	216258045	.	C	.	.	PASS	END=216258212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	216258213	.	A	G	3055.38	PASS	BaseQRankSum=-0.380;DP=217;Dels=0.00;FS=1.757;HRun=2;HaplotypeScore=25.9280;MQ=60;MQ0=0;MQRankSum=-0.763;QD=14.08;ReadPosRankSum=1.639;SB=-1286.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:105,112:217:99:3085,0,2698:60:99:0.516
chr1	216258214	.	T	.	.	PASS	END=216258270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	216260010	.	G	.	.	PASS	END=216260038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	216260039	.	T	.	.	PASS	END=216260114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	216260115	.	C	.	.	PASS	END=216260141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	216260142	.	C	.	.	PASS	END=216260185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	216260186	.	A	.	.	PASS	END=216260189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	216260190	.	C	.	.	PASS	END=216260201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	216260202	.	A	.	.	PASS	END=216260213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	216262304	.	G	.	.	PASS	END=216262313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:60
chr1	216262314	.	C	.	.	PASS	END=216262336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	216262337	.	A	.	.	PASS	END=216262353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	216262354	.	C	.	.	PASS	END=216262356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	216262357	.	G	.	.	PASS	END=216262428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	216262429	.	T	.	.	PASS	END=216262489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	216262490	.	A	.	.	PASS	END=216262507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	216262508	.	T	.	.	PASS	END=216262532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	216270374	.	A	.	.	PASS	END=216270422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	216270423	.	A	.	.	PASS	END=216270518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	216270519	.	C	.	.	PASS	END=216270550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	216270551	.	A	.	.	PASS	END=216270593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	216270594	.	T	.	.	PASS	END=216270606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	216348529	.	T	.	.	PASS	END=216348538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	216348539	.	G	.	.	PASS	END=216348552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	216348553	.	G	.	.	PASS	END=216348562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	216348563	.	T	.	.	PASS	END=216348579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	216348580	.	T	.	.	PASS	END=216348599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	216348600	.	A	.	.	PASS	END=216348622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	216348623	.	G	.	.	PASS	END=216348729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	216348730	.	A	.	.	PASS	END=216348757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	216348758	.	A	.	.	PASS	END=216348791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	216348792	.	C	.	.	PASS	END=216348819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	216348820	.	T	.	.	PASS	END=216348837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	216348838	.	A	.	.	PASS	END=216348875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	216363514	.	T	.	.	PASS	END=216363556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	216363557	.	T	.	.	PASS	END=216363633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	216363634	.	T	.	.	PASS	END=216363648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	216363649	.	T	.	.	PASS	END=216363663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	216363664	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:72:60
chr1	216363665	.	T	.	.	PASS	END=216363680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	216363681	.	A	.	.	PASS	END=216363687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	216363688	.	G	.	.	PASS	END=216363690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	216363691	.	A	.	.	PASS	END=216363698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	216363699	.	G	.	.	PASS	END=216363708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	216363709	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:2:60
chr1	216363710	.	C	.	.	PASS	END=216363719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	216363720	.	A	.	.	PASS	END=216363736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	216363737	.	G	.	.	PASS	END=216363740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	216363741	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	216363742	.	A	.	.	PASS	END=216363748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	216363749	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:61
chr1	216363750	.	T	.	.	PASS	END=216363751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:61
chr1	216363752	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:2:61
chr1	216363753	.	G	.	.	PASS	END=216363755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:61
chr1	216363756	.	A	.	.	LowGQX	END=216363760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:61
chr1	216369844	.	A	.	.	PASS	END=216369878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	216369879	.	T	.	.	PASS	END=216369918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	216369919	.	C	.	.	PASS	END=216369962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	216369963	.	C	.	.	PASS	END=216370028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	216370029	.	G	.	.	PASS	END=216370060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	216370061	.	G	.	.	PASS	END=216370073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	216370074	.	A	.	.	PASS	END=216370092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	216370093	.	C	.	.	PASS	END=216370105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	216370106	.	G	.	.	PASS	END=216370107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	216370108	.	C	T	299.78	PASS	BaseQRankSum=0.722;DP=22;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=1.379;QD=13.63;ReadPosRankSum=1.510;SB=-33.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:11,11:22:99:330,0,320:60:99:0.500
chr1	216370109	.	G	.	.	PASS	END=216370115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr1	216371606	.	A	.	.	PASS	END=216371612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	216371613	.	C	.	.	PASS	END=216371626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	216371627	.	A	.	.	PASS	END=216371628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	216371629	.	A	.	.	PASS	END=216371632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	216371633	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	216371634	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:2:60
chr1	216371635	.	A	.	.	PASS	END=216371649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	216371650	.	T	.	.	PASS	END=216371654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	216371655	.	A	.	.	PASS	END=216371669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	216371670	.	T	.	.	PASS	END=216371685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	216371686	.	G	.	.	PASS	END=216371703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	216371704	.	G	.	.	PASS	END=216371715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	216371716	.	G	.	.	PASS	END=216371739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	216371740	.	G	.	.	PASS	END=216371757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	216371758	.	G	.	.	PASS	END=216371884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	216371885	.	A	.	.	PASS	END=216371906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	216371907	.	T	.	.	PASS	END=216371920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	216371921	.	T	.	.	PASS	END=216371933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	216371934	.	A	C	811.81	PASS	BaseQRankSum=1.524;DP=61;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.9993;MQ=60;MQ0=0;MQRankSum=1.105;QD=13.31;ReadPosRankSum=-1.379;SB=-156.93	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:32,29:61:99:842,0,924:60:99:0.475
chr1	216371935	.	A	.	.	PASS	END=216371959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	216371960	.	A	.	.	PASS	END=216371977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	216372918	.	T	.	.	PASS	END=216372948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	216372949	.	T	.	.	PASS	END=216372982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	216372983	.	G	.	.	PASS	END=216373031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:96:60
chr1	216373032	.	T	.	.	PASS	END=216373055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	216373056	.	G	.	.	PASS	END=216373066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	216373067	.	G	.	.	PASS	END=216373086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	216373087	.	G	.	.	PASS	END=216373108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	216373109	.	G	.	.	PASS	END=216373165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:285:99:60
chr1	216373166	.	G	.	.	PASS	END=216373254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:302:99:60
chr1	216373255	.	T	.	.	PASS	END=216373299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr1	216373300	.	A	.	.	PASS	END=216373348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	216373349	.	T	.	.	PASS	END=216373376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	216373377	.	T	.	.	PASS	END=216373385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	216373386	.	C	.	.	PASS	END=216373402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	216373403	.	T	.	.	PASS	END=216373427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:61
chr1	216373428	.	A	.	.	PASS	END=216373438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:61
chr1	216373439	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:54:62
chr1	216373440	.	C	.	.	PASS	END=216373444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:62
chr1	216373445	.	T	.	.	PASS	END=216373447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:51:62
chr1	216373448	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:99:62
chr1	216373449	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:51:62
chr1	216373450	.	G	.	81.15	PASS	DP=33;MQ=62;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:25:33:51.16:62:51
chr1	216373451	.	A	.	.	PASS	END=216373452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:62
chr1	216373453	.	G	.	.	PASS	END=216373455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:42:62
chr1	216373456	.	T	.	.	PASS	END=216373457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:62
chr1	216373458	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:33:62
chr1	216373459	.	A	.	.	PASS	END=216373460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:63
chr1	216373461	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:27:63
chr1	216373462	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:42:63
chr1	216373463	.	C	.	.	LowGQX	END=216373465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:21:63
chr1	216373466	.	G	.	8.19	LowGQX	DP=19;MQ=63;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:12:19:0.02:63:0
chr1	216373467	.	A	.	.	PASS	END=216373468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:63
chr1	216373469	.	A	.	.	PASS	END=216373470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:63
chr1	216373471	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:12:63
chr1	216373472	.	A	.	.	PASS	END=216373474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:64
chr1	216373475	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:64
chr1	216373476	.	G	.	33	LowGQX	DP=18;MQ=64;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:18:3.01:64:3
chr1	216373476	.	G	GA	137.74	SB	BaseQRankSum=-1.588;DP=18;FS=0.000;HRun=12;HaplotypeScore=148.2053;MQ=64;MQ0=0;MQRankSum=2.358;QD=7.65;ReadPosRankSum=-2.646;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:9,9:18:99:177,0,161:64:99:0.500
chr1	216373477	.	A	.	.	PASS	END=216373507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:63
chr1	216373508	.	T	.	.	PASS	END=216373509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:62
chr1	216373510	.	G	.	.	PASS	END=216373512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:62
chr1	216373513	.	G	.	.	PASS	END=216373514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:62
chr1	216380564	.	A	.	.	PASS	END=216380603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	216380604	.	C	.	.	PASS	END=216380621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	216380622	.	G	.	.	PASS	END=216380706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:77:60
chr1	216380707	.	C	.	.	PASS	END=216380733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	216380734	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr1	216380735	.	T	.	.	PASS	END=216380753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	216380754	.	C	.	.	PASS	END=216380768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	216380769	.	T	.	.	PASS	END=216380789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	216380790	.	A	.	.	PASS	END=216380800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	216380801	.	T	.	.	PASS	END=216380820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	216380821	.	A	.	.	PASS	END=216380824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:39:60
chr1	216390678	.	C	.	.	PASS	END=216390679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	216390680	.	C	.	.	PASS	END=216390682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	216390683	.	G	.	.	PASS	END=216390695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	216390696	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:99:60
chr1	216390697	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:60
chr1	216390698	.	A	.	.	PASS	END=216390710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	216390711	.	G	.	.	PASS	END=216390750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	216390751	.	G	.	.	PASS	END=216390803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	216390804	.	T	.	.	PASS	END=216390849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	216390850	.	T	.	.	PASS	END=216390886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	216390887	.	T	.	.	PASS	END=216390927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	216390928	.	G	.	.	PASS	END=216390943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	216405244	.	T	.	.	PASS	END=216405260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	216405261	.	A	.	.	PASS	END=216405282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	216405283	.	A	.	.	PASS	END=216405294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	216405295	.	C	.	.	PASS	END=216405339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	216405340	.	T	.	.	PASS	END=216405384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	216405385	.	C	.	.	PASS	END=216405429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	216405430	.	C	.	.	PASS	END=216405459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	216405460	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:58:60
chr1	216405461	.	C	.	.	PASS	END=216405505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	216405506	.	T	.	.	PASS	END=216405529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	216419876	.	A	.	.	PASS	END=216419888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	216419889	.	T	.	.	PASS	END=216419901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	216419902	.	A	.	.	PASS	END=216419926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	216419927	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:56:60
chr1	216419928	.	T	.	.	PASS	END=216419933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:93:60
chr1	216419934	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:47:60
chr1	216419935	.	C	.	.	PASS	END=216419943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	216419944	.	C	.	.	PASS	END=216419945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	216419946	.	C	.	.	PASS	END=216419964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	216419965	.	G	.	.	PASS	END=216419970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	216419971	.	C	.	.	PASS	END=216419992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	216419993	.	G	.	.	PASS	END=216420013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	216420014	.	A	.	.	PASS	END=216420032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	216420033	.	C	.	.	PASS	END=216420072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	216420073	.	T	.	.	PASS	END=216420149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:60
chr1	216420150	.	G	.	.	PASS	END=216420240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:295:99:60
chr1	216420241	.	C	.	.	PASS	END=216420298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:60
chr1	216420299	.	C	.	.	PASS	END=216420327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	216420328	.	A	.	.	PASS	END=216420441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	216420442	.	T	.	.	PASS	END=216420451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	216420452	.	G	.	.	PASS	END=216420480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	216420481	.	T	.	.	PASS	END=216420491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	216420492	.	C	.	.	PASS	END=216420503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	216420504	.	A	.	.	PASS	END=216420515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	216420516	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:68:60
chr1	216420517	.	T	.	.	PASS	END=216420523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	216420524	.	T	.	.	PASS	END=216420562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	216420563	.	T	.	.	PASS	END=216420565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	216420566	.	G	.	.	PASS	END=216420567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	216420568	.	C	.	.	PASS	END=216420580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	216420581	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	216420582	.	A	.	.	PASS	END=216420593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	216420594	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	216420595	.	G	.	.	PASS	END=216420597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	216420598	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	216420599	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	216420600	.	T	.	.	LowGQX	END=216420611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	216420612	.	T	.	.	PASS	END=216420619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	216424194	.	T	.	.	PASS	END=216424204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	216424205	.	G	.	.	PASS	END=216424261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	216424262	.	C	.	.	PASS	END=216424319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	216424320	.	T	.	.	PASS	END=216424352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	216424353	.	C	.	.	PASS	END=216424387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr1	216424388	.	T	.	.	PASS	END=216424404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	216424405	.	A	.	.	PASS	END=216424413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	216424414	.	T	.	.	PASS	END=216424424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:63:60
chr1	216424425	.	T	.	.	PASS	END=216424429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	216424430	.	T	.	.	PASS	END=216424434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	216424435	.	T	.	.	PASS	END=216424442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	216424443	.	A	.	.	LowGQX	END=216424453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	216424454	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	216424455	.	A	.	.	LowGQX	END=216424456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	216424457	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	216424458	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	216424459	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	216424460	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	216424461	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	216424462	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	216424463	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	216424464	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	216424465	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	216424466	.	A	.	.	LowGQX	END=216424467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	216424468	.	T	.	.	PASS	END=216424470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	216424471	.	T	.	.	LowGQX	END=216424474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	216424475	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	216424476	.	G	.	.	LowGQX	END=216424477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr1	216424478	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	216424479	.	T	.	.	LowGQX	END=216424480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	216424481	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	216424482	.	A	.	.	LowGQX	END=216424491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	216462571	.	G	.	.	PASS	END=216462596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	216462597	.	A	.	.	PASS	END=216462736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	216462737	.	A	.	.	PASS	END=216462803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	216465466	.	A	.	.	LowGQX	END=216465468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	216465469	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:1:60
chr1	216465470	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	216465471	.	A	.	.	LowGQX	END=216465474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	216465475	.	C	.	.	LowGQX	END=216465480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	216465481	.	C	.	.	LowGQX	END=216465483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	216465484	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	216465485	.	C	.	.	LowGQX	END=216465488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	216465489	.	C	.	.	LowGQX	END=216465492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	216465493	.	C	.	6.76	LowGQX	DP=7;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:7:0.02:60:0
chr1	216465494	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr1	216465495	.	C	.	.	LowGQX	END=216465515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	216465516	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	216465517	.	C	.	.	PASS	END=216465521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	216465522	.	G	.	.	PASS	END=216465523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	216465524	.	G	.	.	PASS	END=216465529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	216465530	.	C	.	.	PASS	END=216465557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	216465558	.	C	.	.	PASS	END=216465595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	216465596	.	G	.	.	PASS	END=216465636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	216465637	.	G	.	.	PASS	END=216465708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	216465709	.	C	.	.	PASS	END=216465746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	216465747	.	A	.	.	PASS	END=216465763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	216495174	.	A	.	.	PASS	END=216495190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	216495191	.	T	G	1505.34	PASS	BaseQRankSum=-0.324;DP=113;Dels=0.00;FS=0.735;HRun=0;HaplotypeScore=10.7250;MQ=60;MQ0=0;MQRankSum=-0.146;QD=13.32;ReadPosRankSum=-1.479;SB=-727.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:56,57:113:99:1535,0,1445:60:99:0.504
chr1	216495192	.	T	.	.	PASS	END=216495229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	216495230	.	G	.	.	PASS	END=216495329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	216495330	.	A	.	.	PASS	END=216495349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	216495350	.	A	.	.	PASS	END=216495369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	216496765	.	A	.	.	PASS	END=216496842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	216496843	.	G	.	.	PASS	END=216496862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	216496863	.	G	.	.	PASS	END=216496881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	216496882	.	G	.	.	PASS	END=216496946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	216496947	.	G	A	1656.62	PASS	BaseQRankSum=4.027;DP=148;Dels=0.00;FS=4.324;HRun=0;HaplotypeScore=7.6281;MQ=60;MQ0=0;MQRankSum=-0.521;QD=11.19;ReadPosRankSum=-0.420;SB=-659.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:84,64:148:99:1687,0,1828:60:99:0.432
chr1	216496948	.	G	.	.	PASS	END=216497011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	216497012	.	C	.	.	PASS	END=216497032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	216497033	.	T	.	.	PASS	END=216497088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	216497459	.	T	.	.	PASS	END=216497581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	216497582	.	C	.	.	PASS	END=216497605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	216497606	.	T	.	.	PASS	END=216497745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	216498596	.	T	.	.	PASS	END=216498619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	216498620	.	A	.	.	PASS	END=216498627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	216498628	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:54:60
chr1	216498629	.	C	.	.	PASS	END=216498644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	216498645	.	A	.	.	PASS	END=216498678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	216498679	.	T	.	.	PASS	END=216498695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	216498696	.	A	.	.	PASS	END=216498754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	216498755	.	G	.	.	PASS	END=216498795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	216498796	.	C	.	.	PASS	END=216498825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	216498826	.	T	.	.	PASS	END=216498842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	216498843	.	T	.	.	PASS	END=216498862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	216498863	.	C	.	.	PASS	END=216498884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	216498885	.	C	.	.	PASS	END=216498905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	216498906	.	C	.	.	PASS	END=216498922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:63:60
chr1	216498923	.	G	.	.	PASS	END=216498928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr1	216498929	.	T	.	.	PASS	END=216498944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	216498945	.	T	.	.	PASS	END=216498959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	216498960	.	A	.	.	PASS	END=216498961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	216498962	.	A	.	.	LowGQX	END=216498984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	216498985	.	A	.	.	LowGQX	END=216498992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	216500882	.	T	.	.	PASS	END=216500915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	216500916	.	A	.	.	PASS	END=216501010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	216501011	.	A	.	.	PASS	END=216501023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	216501024	.	A	.	.	PASS	END=216501035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	216501036	.	T	.	.	PASS	END=216501040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	216501041	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr1	216501042	.	A	.	.	PASS	END=216501047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	216538244	.	A	.	.	PASS	END=216538286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	216538287	.	A	.	.	PASS	END=216538320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	216538321	.	G	.	.	PASS	END=216538390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	216538391	.	C	T	3094.14	PASS	BaseQRankSum=3.914;DP=194;Dels=0.00;FS=0.589;HRun=0;HaplotypeScore=11.5203;MQ=60;MQ0=0;MQRankSum=0.953;QD=15.95;ReadPosRankSum=1.745;SB=-1059.67	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:90,104:194:99:3124,0,2394:60:99:0.536
chr1	216538392	.	G	.	.	PASS	END=216538478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	216591805	.	A	.	.	PASS	END=216591868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	216591869	.	T	.	.	PASS	END=216592028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	216592029	.	A	.	.	PASS	END=216592072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	216595143	.	T	.	.	PASS	END=216595160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	216595161	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:18:60
chr1	216595162	.	C	.	.	PASS	END=216595174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	216595175	.	T	.	.	PASS	END=216595180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:96:60
chr1	216595181	.	C	.	.	PASS	END=216595191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	216595192	.	A	.	.	PASS	END=216595205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	216595206	.	T	.	.	PASS	END=216595228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	216595229	.	T	.	.	PASS	END=216595244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	216595245	.	A	.	.	PASS	END=216595305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	216595306	.	C	T	1890.55	PASS	BaseQRankSum=4.698;DP=182;Dels=0.00;FS=1.879;HRun=0;HaplotypeScore=5.6815;MQ=60;MQ0=0;MQRankSum=-0.222;QD=10.39;ReadPosRankSum=-0.035;SB=-1174.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:98,84:182:99:1921,0,2187:60:99:0.462
chr1	216595307	.	A	.	.	PASS	END=216595379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	216595380	.	A	.	.	PASS	END=216595448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	216595449	.	T	.	.	PASS	END=216595475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	216595476	.	T	.	.	PASS	END=216595510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	216595511	.	T	.	.	PASS	END=216595533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	216595534	.	C	.	.	PASS	END=216595545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	216595546	.	C	.	.	PASS	END=216595556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	216595557	.	T	.	.	PASS	END=216595561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	216595562	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:27:60
chr1	216595563	.	C	.	.	PASS	END=216595579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	216595580	.	T	.	.	PASS	END=216595595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	216595596	.	A	.	.	PASS	END=216595601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	216595602	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	216595603	.	C	.	.	PASS	END=216595610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	216595611	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	216595612	.	C	.	.	PASS	END=216595621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	216595622	.	C	.	.	PASS	END=216595627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	216595628	.	A	.	.	PASS	END=216595638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	216595639	.	A	.	.	PASS	END=216595653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	216595654	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	216595655	.	C	.	.	PASS	END=216595658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	216595659	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	216595660	.	A	.	.	PASS	END=216595662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	216595663	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	216595664	.	A	.	.	PASS	END=216595667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	216595668	.	G	.	.	LowGQX	END=216595669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	216595670	.	G	.	.	PASS	END=216595675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	216595676	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	216595677	.	A	.	.	PASS	END=216595678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	216595679	.	G	.	.	LowGQX	END=216595680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	216595681	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	216595682	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	216595683	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:36:60
chr1	216595684	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	216595685	.	A	.	.	PASS	END=216595698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	216595699	.	C	.	.	PASS	END=216595702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	216595703	.	T	.	.	PASS	END=216595704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	216595705	.	A	.	.	PASS	END=216595709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	216595710	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	216595711	.	C	.	.	PASS	END=216595719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	216595720	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:42:60
chr1	216595721	.	T	.	.	PASS	END=216595727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	216595728	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	216595729	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr1	216679907	.	T	.	.	LowGQX	END=216679912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	216679913	.	A	.	.	LowGQX	END=216679914	GT	./.
chr1	216679915	.	G	.	.	LowGQX	END=216679935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	216679936	.	A	.	.	LowGQX	.	GT	./.
chr1	216679937	.	G	.	.	LowGQX	END=216679946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	216679947	.	A	.	.	LowGQX	END=216679948	GT	./.
chr1	216679949	.	G	.	.	LowGQX	END=216679951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	216679952	.	A	.	.	LowGQX	.	GT	./.
chr1	216679953	.	G	.	.	LowGQX	END=216679954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	216679955	.	C	.	.	LowGQX	.	GT	./.
chr1	216679956	.	A	.	.	LowGQX	END=216679957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	216679958	.	A	.	.	LowGQX	.	GT	./.
chr1	216679959	.	C	.	.	LowGQX	END=216679962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	216679963	.	A	.	.	LowGQX	.	GT	./.
chr1	216679964	.	A	.	.	LowGQX	END=216679965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	216679966	.	A	.	.	LowGQX	END=216679968	GT	./.
chr1	216679969	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	216679970	.	T	.	.	LowGQX	.	GT	./.
chr1	216679971	.	A	.	.	LowGQX	END=216679977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	216679978	.	A	.	.	LowGQX	END=216679979	GT	./.
chr1	216679980	.	T	.	.	LowGQX	END=216679984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	216679985	.	A	.	.	LowGQX	END=216679986	GT	./.
chr1	216679987	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	216679988	.	A	.	.	LowGQX	.	GT	./.
chr1	216679989	.	G	.	.	LowGQX	END=216679991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	216679992	.	A	.	.	LowGQX	END=216679993	GT	./.
chr1	216679994	.	G	.	.	LowGQX	END=216679998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	216679999	.	A	.	.	LowGQX	.	GT	./.
chr1	216680000	.	A	.	.	LowGQX	END=216680001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	216680002	.	C	.	.	LowGQX	.	GT	./.
chr1	216680003	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	216680004	.	A	.	.	LowGQX	END=216680005	GT	./.
chr1	216680006	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	216680279	.	A	.	.	PASS	END=216680284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	216680285	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:57:60
chr1	216680286	.	C	.	.	PASS	END=216680296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	216680297	.	A	.	.	PASS	END=216680343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	216680344	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:24:60
chr1	216680345	.	A	.	.	PASS	END=216680365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	216680366	.	G	.	.	PASS	END=216680380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	216680381	.	T	.	.	PASS	END=216680431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:86:60
chr1	216680432	.	T	.	.	PASS	END=216680469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	216680470	.	A	.	.	PASS	END=216680527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	216692482	.	C	.	.	PASS	END=216692506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:96:60
chr1	216692507	.	A	.	.	PASS	END=216692596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	216692597	.	A	.	.	PASS	END=216692609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	216692610	.	A	.	.	PASS	END=216692657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	216692658	.	T	.	.	PASS	END=216692668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	216692669	.	C	T	1077.60	PASS	BaseQRankSum=1.391;DP=71;Dels=0.00;FS=6.928;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=-0.180;QD=15.18;ReadPosRankSum=-1.088;SB=-317.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,41:71:99:1108,0,851:60:99:0.577
chr1	216692670	.	G	.	.	PASS	END=216692750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	216692751	.	A	.	.	PASS	END=216692760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr1	216692761	.	A	.	.	PASS	END=216692763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	216692764	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:30:60
chr1	216692765	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:72:60
chr1	216737559	.	A	.	.	LowGQX	END=216737563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	216737564	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	216737565	.	A	.	.	LowGQX	END=216737572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	216737573	.	T	.	.	LowGQX	END=216737582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	216737583	.	A	.	.	LowGQX	END=216737591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	216737592	.	C	.	.	LowGQX	END=216737601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	216737602	.	C	.	.	PASS	END=216737603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	216737604	.	G	.	.	LowGQX	END=216737605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	216737606	.	C	.	.	PASS	END=216737620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	216737621	.	G	.	.	PASS	END=216737669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	216737670	.	G	.	.	PASS	END=216737694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	216737695	.	A	.	.	PASS	END=216737742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	216737743	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr1	216741328	.	A	.	.	PASS	END=216741383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	216741384	.	C	.	.	PASS	END=216741423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	216741424	.	T	.	.	PASS	END=216741442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	216824313	.	A	.	.	PASS	END=216824367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	216824368	.	G	.	.	PASS	END=216824429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	216824430	.	G	.	.	PASS	END=216824433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:78:60
chr1	216850416	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	216850417	.	C	.	.	PASS	END=216850418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	216850419	.	T	.	.	LowGQX	END=216850420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	216850421	.	G	.	.	PASS	END=216850422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	216850423	.	A	.	.	LowGQX	END=216850424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:60
chr1	216850425	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	216850426	.	G	.	.	LowGQX	END=216850428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	216850429	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	216850430	.	T	.	.	LowGQX	END=216850432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	216850433	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	216850434	.	G	.	.	LowGQX	END=216850439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	216850440	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	216850441	.	G	.	.	LowGQX	END=216850443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	216850444	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	216850445	.	T	.	.	LowGQX	END=216850447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	216850448	.	A	.	.	PASS	END=216850449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	216850450	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	216850451	.	C	.	.	PASS	END=216850470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	216850471	.	T	.	.	PASS	END=216850477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	216850478	.	A	.	.	PASS	END=216850499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	216850500	.	C	.	.	PASS	END=216850507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	216850508	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:22:60
chr1	216850509	.	C	.	.	PASS	END=216850520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	216850521	.	C	.	.	PASS	END=216850564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	216850565	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:18:60
chr1	216850566	.	A	.	.	PASS	END=216850627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	216850628	.	C	.	.	PASS	END=216850657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	216850658	.	C	.	.	PASS	END=216850664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	216850665	.	A	.	.	PASS	END=216850666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	216850667	.	G	.	.	PASS	END=216850684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	216850685	.	T	.	.	PASS	END=216850688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	216850689	.	G	.	.	LowGQX	END=216850691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	216850692	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	216850693	.	C	.	.	LowGQX	END=216850695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	216850696	.	C	.	.	PASS	END=216850697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	216850698	.	G	.	.	LowGQX	END=216850711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	216850712	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	216850713	.	A	.	.	LowGQX	END=216850722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	216850723	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	216850724	.	G	.	.	LowGQX	END=216850726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	216850727	.	G	.	.	LowGQX	END=216850730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	216850731	.	G	.	.	LowGQX	END=216850735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	216850736	.	T	.	.	LowGQX	END=216850750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	216850751	.	C	.	.	LowGQX	END=216850752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	216850753	.	G	.	.	LowGQX	END=216850765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	216850766	.	C	.	.	LowGQX	END=216850830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	216850831	.	A	.	.	LowGQX	END=216850835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	216880686	.	A	.	.	PASS	END=216880698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	216880699	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:45:60
chr1	216880700	.	C	.	.	PASS	END=216880713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	216880714	.	G	.	.	PASS	END=216880717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	216880718	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:48:60
chr1	216880719	.	C	.	.	PASS	END=216880729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	216880730	.	A	.	.	PASS	END=216880761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	216880762	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:36:60
chr1	216880763	.	T	.	.	PASS	END=216880774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	216880775	.	G	.	.	PASS	END=216880785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	216896564	.	A	.	.	PASS	END=216896579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	216896580	.	A	.	.	PASS	END=216896588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	216896589	.	T	.	.	PASS	END=216896663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	217604485	.	T	.	.	LowGQX	END=217604592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217604593	.	G	.	.	LowGQX	END=217604637	GT	./.
chr1	217604638	.	C	.	.	LowGQX	END=217604668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217604669	.	T	.	.	LowGQX	.	GT	./.
chr1	217604670	.	A	.	.	LowGQX	END=217604709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217622586	.	T	.	.	LowGQX	END=217622643	GT	./.
chr1	217622644	.	C	.	.	LowGQX	END=217622685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217665008	.	T	.	.	LowGQX	END=217665107	GT	./.
chr1	217671608	.	C	.	.	LowGQX	END=217671689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217671690	.	G	.	.	LowGQX	.	GT	./.
chr1	217671691	.	T	.	.	LowGQX	END=217671719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217671720	.	C	.	.	LowGQX	END=217671767	GT	./.
chr1	217688148	.	C	.	.	LowGQX	END=217688247	GT	./.
chr1	217783468	.	A	.	.	LowGQX	END=217783567	GT	./.
chr1	217783653	.	G	.	.	LowGQX	END=217783752	GT	./.
chr1	217784229	.	A	.	.	LowGQX	END=217784415	GT	./.
chr1	217787411	.	A	.	.	LowGQX	END=217787563	GT	./.
chr1	217793123	.	A	.	.	LowGQX	END=217793843	GT	./.
chr1	217804236	.	T	.	.	LowGQX	END=217804335	GT	./.
chr1	217804705	.	C	.	.	LowGQX	END=217804716	GT	./.
chr1	217804717	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217804718	.	A	.	.	LowGQX	.	GT	./.
chr1	217804719	.	C	.	.	LowGQX	END=217804727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217804728	.	C	.	.	LowGQX	.	GT	./.
chr1	217804729	.	G	.	.	LowGQX	END=217804732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217804733	.	G	.	.	LowGQX	.	GT	./.
chr1	217804734	.	C	.	.	LowGQX	END=217804736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217804737	.	G	.	.	LowGQX	.	GT	./.
chr1	217804738	.	G	.	.	LowGQX	END=217804740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217804741	.	G	.	.	LowGQX	.	GT	./.
chr1	217804742	.	C	.	.	LowGQX	END=217804751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217804752	.	C	.	.	LowGQX	.	GT	./.
chr1	217804753	.	G	.	.	LowGQX	END=217804764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217804765	.	A	.	.	LowGQX	.	GT	./.
chr1	217804766	.	A	.	.	LowGQX	END=217804778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217804779	.	T	.	.	LowGQX	.	GT	./.
chr1	217804780	.	T	.	.	LowGQX	END=217804804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217822219	.	T	.	.	LowGQX	END=217822318	GT	./.
chr1	217824377	.	A	.	.	LowGQX	END=217824529	GT	./.
chr1	217842293	.	T	.	.	LowGQX	END=217842450	GT	./.
chr1	217856598	.	A	.	.	LowGQX	END=217856757	GT	./.
chr1	217915315	.	A	.	.	LowGQX	END=217915325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	217915326	.	G	.	.	LowGQX	.	GT	./.
chr1	217915327	.	G	.	.	LowGQX	END=217915340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	217915341	.	A	.	.	LowGQX	.	GT	./.
chr1	217915342	.	A	.	.	LowGQX	END=217915345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	217915346	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	217915347	.	A	.	.	LowGQX	END=217915350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	217915351	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	217915352	.	G	.	.	LowGQX	END=217915358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	217915359	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	217915360	.	A	.	.	LowGQX	END=217915361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	217915362	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	217915363	.	A	.	.	LowGQX	END=217915371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	217915372	.	C	.	.	LowGQX	.	GT	./.
chr1	217915373	.	T	.	.	LowGQX	END=217915378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	217915379	.	G	.	.	LowGQX	.	GT	./.
chr1	217915380	.	G	.	.	LowGQX	END=217915381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	217915382	.	A	.	.	LowGQX	.	GT	./.
chr1	217915383	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	217915384	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	217915385	.	A	.	.	LowGQX	END=217915391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	217915392	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	217915393	.	A	.	.	LowGQX	END=217915394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	217915395	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	217915396	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	217915397	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	217915398	.	T	.	.	LowGQX	.	GT	./.
chr1	217915399	.	T	.	.	LowGQX	END=217915415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	217915416	.	G	.	.	LowGQX	.	GT	./.
chr1	217915417	.	C	.	.	LowGQX	END=217915418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	217915419	.	T	.	.	LowGQX	.	GT	./.
chr1	217915420	.	T	.	.	LowGQX	END=217915421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217915422	.	C	.	.	LowGQX	.	GT	./.
chr1	217915423	.	C	.	.	LowGQX	END=217915425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217915426	.	C	.	.	LowGQX	.	GT	./.
chr1	217915427	.	T	.	.	LowGQX	END=217915431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217915432	.	A	.	.	LowGQX	.	GT	./.
chr1	217915433	.	C	.	.	LowGQX	END=217915434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217915435	.	A	.	.	LowGQX	.	GT	./.
chr1	217915436	.	A	.	.	LowGQX	END=217915441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217915442	.	T	.	.	LowGQX	.	GT	./.
chr1	217947674	.	A	.	.	LowGQX	END=217947724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217947725	.	A	.	.	LowGQX	END=217947881	GT	./.
chr1	217955514	.	A	.	.	LowGQX	END=217955666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	217975058	.	A	.	.	LowGQX	END=217975237	GT	./.
chr1	218036054	.	T	.	.	LowGQX	END=218036206	GT	./.
chr1	218458657	.	A	.	.	LowGQX	END=218458846	GT	./.
chr1	218475634	.	A	.	.	LowGQX	END=218475903	GT	./.
chr1	218478368	.	A	.	.	LowGQX	END=218478469	GT	./.
chr1	218480771	.	A	.	.	LowGQX	END=218480797	GT	./.
chr1	218480798	.	G	.	.	LowGQX	END=218480878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	218480879	.	A	.	.	LowGQX	.	GT	./.
chr1	218480880	.	C	.	.	LowGQX	END=218480930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	218480931	.	C	.	.	LowGQX	.	GT	./.
chr1	218480932	.	A	.	.	LowGQX	END=218480948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	218480949	.	G	.	.	LowGQX	END=218480976	GT	./.
chr1	218504288	.	A	.	.	LowGQX	END=218504435	GT	./.
chr1	218520032	.	C	.	.	PASS	END=218520045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	218520046	.	G	.	.	PASS	END=218520050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	218520051	.	A	.	.	PASS	END=218520074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	218520075	.	T	.	.	PASS	END=218520222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	218520223	.	C	.	.	PASS	END=218520277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	218520278	.	C	.	.	PASS	END=218520350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	218520351	.	T	.	.	PASS	END=218520381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	218520382	.	C	.	.	PASS	END=218520391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	218536668	.	A	.	.	PASS	END=218536733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	218536734	.	G	.	.	PASS	END=218536767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	218578509	.	A	.	.	PASS	END=218578524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	218578525	.	A	.	.	PASS	END=218578538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	218578539	.	C	.	.	PASS	END=218578672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	218578673	.	A	.	.	PASS	END=218578680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	218578681	.	T	.	.	PASS	END=218578726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	218578727	.	C	.	.	PASS	END=218578753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	218578754	.	T	.	.	PASS	END=218578761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	218578762	.	A	.	.	PASS	END=218578778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	218578779	.	T	.	.	PASS	END=218578790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	218578791	.	T	.	.	PASS	END=218578800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	218578801	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:57:60
chr1	218578802	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:75:60
chr1	218578803	.	T	.	.	PASS	END=218578804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:60
chr1	218578805	.	C	.	.	PASS	END=218578821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	218578822	.	T	.	.	PASS	END=218578827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	218578828	.	T	.	.	PASS	END=218578837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	218578838	.	A	.	.	PASS	END=218578843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	218578844	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:3:60
chr1	218578845	.	T	.	.	PASS	END=218578852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	218578853	.	T	.	.	LowGQX	END=218578856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	218578857	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	218578858	.	C	.	.	LowGQX	END=218578863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	218578864	.	A	.	.	LowGQX	END=218578866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	218578867	.	C	.	.	LowGQX	END=218578868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	218578869	.	A	.	.	LowGQX	END=218578870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	218578871	.	T	.	.	LowGQX	END=218578881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	218607422	.	A	.	.	PASS	END=218607458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	218607459	.	G	.	.	PASS	END=218607548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	218607549	.	C	.	.	PASS	END=218607558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	218607678	.	A	.	.	PASS	END=218607702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	218607703	.	A	.	.	PASS	END=218607792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	218609310	.	A	.	.	PASS	END=218609322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	218609323	.	A	.	.	PASS	END=218609328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	218609329	.	A	.	.	PASS	END=218609419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	218609420	.	C	.	.	PASS	END=218609436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	218609437	.	C	.	.	PASS	END=218609484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	218609485	.	T	.	.	PASS	END=218609491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	218610683	.	A	.	.	PASS	END=218610704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	218610705	.	G	.	.	PASS	END=218610794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr1	218610795	.	G	.	.	PASS	END=218610840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:60
chr1	218614504	.	C	.	.	PASS	END=218614522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	218614523	.	T	.	.	PASS	END=218614537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	218614538	.	C	.	.	PASS	END=218614556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	218614557	.	A	.	.	PASS	END=218614631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	218614632	.	C	.	.	PASS	END=218614687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	218614688	.	C	.	.	PASS	END=218614706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	218683434	.	A	.	.	LowGQX	END=218683533	GT	./.
chr1	218696643	.	A	.	.	LowGQX	END=218696724	GT	./.
chr1	218696725	.	C	.	.	LowGQX	END=218696793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	218698748	.	G	.	.	LowGQX	END=218698777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	218698778	.	G	.	.	LowGQX	.	GT	./.
chr1	218698779	.	A	.	.	LowGQX	END=218698785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	218698786	.	C	.	.	LowGQX	.	GT	./.
chr1	218698787	.	C	.	.	LowGQX	END=218698845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	218698846	.	G	.	.	LowGQX	.	GT	./.
chr1	218698847	.	A	.	.	LowGQX	END=218698870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	219347229	.	A	.	.	LowGQX	END=219347328	GT	./.
chr1	219352487	.	A	.	.	LowGQX	END=219352646	GT	./.
chr1	219366422	.	A	.	.	LowGQX	END=219366595	GT	./.
chr1	219383817	.	T	.	.	LowGQX	END=219383991	GT	./.
chr1	219384832	.	A	.	.	LowGQX	END=219385072	GT	./.
chr1	219706379	.	C	.	.	LowGQX	END=219706427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	219706428	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	219706429	.	G	.	.	LowGQX	END=219706445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	219706446	.	T	.	.	LowGQX	END=219706478	GT	./.
chr1	220088789	.	G	.	.	PASS	END=220088805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	220088806	.	G	.	.	PASS	END=220088924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	220088925	.	T	.	.	PASS	END=220088943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	220088944	.	G	.	.	PASS	END=220089023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	220089024	.	A	.	.	PASS	END=220089034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	220089035	.	A	.	.	PASS	END=220089149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	220089150	.	G	.	.	PASS	END=220089189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	220089190	.	A	.	.	PASS	END=220089265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	220089266	.	C	.	.	PASS	END=220089292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	220091595	.	A	.	.	PASS	END=220091838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	220100359	.	G	.	.	PASS	END=220100465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	220100466	.	C	.	.	PASS	END=220100478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	220100479	.	A	.	.	PASS	END=220100519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	220101141	.	A	.	.	PASS	END=220101245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	220101246	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:63:60
chr1	220101247	.	G	.	.	PASS	END=220101270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	220101271	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:75:60
chr1	220101272	.	G	.	.	PASS	END=220101282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	220101283	.	A	.	.	PASS	END=220101288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:60
chr1	220101289	.	C	.	.	PASS	END=220101297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	220101298	.	C	.	.	PASS	END=220101299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:75:60
chr1	220101300	.	G	.	.	PASS	END=220101374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	220101375	.	G	.	.	PASS	END=220101421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	220101422	.	C	.	.	PASS	END=220101473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	220101474	.	G	.	.	PASS	END=220101515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	220101516	.	G	.	.	PASS	END=220101560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	220101561	.	G	.	.	PASS	END=220101620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	220101621	.	G	.	.	PASS	END=220101748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	220101749	.	G	.	.	PASS	END=220101772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	220101773	.	A	.	.	PASS	END=220101784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	220142146	.	C	.	.	LowGQX	END=220142300	GT	./.
chr1	220142383	.	C	.	.	LowGQX	END=220142452	GT	./.
chr1	220142453	.	A	.	.	LowGQX	END=220142473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220142474	.	A	.	.	LowGQX	.	GT	./.
chr1	220142475	.	A	.	.	LowGQX	END=220142482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220145401	.	A	.	.	LowGQX	END=220145456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220145457	.	A	.	.	LowGQX	END=220145500	GT	./.
chr1	220146578	.	A	.	.	LowGQX	END=220146742	GT	./.
chr1	220151886	.	A	.	.	LowGQX	END=220151984	GT	./.
chr1	220151985	.	T	.	.	LowGQX	END=220152063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220152758	.	A	.	.	LowGQX	END=220152959	GT	./.
chr1	220153425	.	A	.	.	LowGQX	END=220153584	GT	./.
chr1	220154096	.	A	.	.	LowGQX	END=220154201	GT	./.
chr1	220154710	.	G	.	.	LowGQX	.	GT	./.
chr1	220154711	.	A	.	.	LowGQX	END=220154717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220154718	.	A	.	.	LowGQX	END=220154719	GT	./.
chr1	220154720	.	C	.	.	LowGQX	END=220154723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220154724	.	A	.	.	LowGQX	.	GT	./.
chr1	220154725	.	C	.	.	LowGQX	END=220154730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220154731	.	A	.	.	LowGQX	.	GT	./.
chr1	220154732	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220154733	.	C	.	.	LowGQX	END=220154734	GT	./.
chr1	220154735	.	C	.	.	LowGQX	END=220154744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220154745	.	T	.	.	LowGQX	.	GT	./.
chr1	220154746	.	T	.	.	LowGQX	END=220154752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220154753	.	C	.	.	LowGQX	.	GT	./.
chr1	220154754	.	A	.	.	LowGQX	END=220154764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220154765	.	T	.	.	LowGQX	.	GT	./.
chr1	220154766	.	G	.	.	LowGQX	END=220154767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220154768	.	C	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	220154769	.	T	.	.	LowGQX	.	GT	./.
chr1	220154770	.	G	.	.	LowGQX	END=220154776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220154777	.	T	.	.	LowGQX	.	GT	./.
chr1	220154778	.	T	.	.	LowGQX	END=220154786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220154787	.	G	.	.	LowGQX	.	GT	./.
chr1	220154788	.	C	.	.	LowGQX	END=220154796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220154797	.	T	.	.	LowGQX	.	GT	./.
chr1	220154798	.	T	.	.	LowGQX	END=220154803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220154804	.	A	.	.	LowGQX	.	GT	./.
chr1	220154805	.	A	.	.	LowGQX	END=220154806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220154807	.	A	.	.	LowGQX	.	GT	./.
chr1	220154808	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220154809	.	A	.	.	LowGQX	.	GT	./.
chr1	220156101	.	T	.	.	LowGQX	END=220156200	GT	./.
chr1	220156529	.	A	.	.	LowGQX	END=220156607	GT	./.
chr1	220156608	.	T	.	.	LowGQX	END=220156687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220156688	.	A	.	.	LowGQX	.	GT	./.
chr1	220156689	.	T	.	.	LowGQX	END=220156694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220156695	.	A	.	.	LowGQX	.	GT	./.
chr1	220156696	.	G	.	.	LowGQX	END=220156698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220156699	.	A	.	.	LowGQX	.	GT	./.
chr1	220156700	.	C	.	.	LowGQX	END=220156702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220156703	.	A	.	.	LowGQX	.	GT	./.
chr1	220156704	.	T	.	.	LowGQX	END=220156739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220156740	.	C	.	.	LowGQX	.	GT	./.
chr1	220156741	.	C	.	.	LowGQX	END=220156742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220157524	.	A	.	.	LowGQX	END=220157623	GT	./.
chr1	220160482	.	A	.	.	LowGQX	END=220160666	GT	./.
chr1	220160667	.	G	.	.	LowGQX	END=220160748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	220161930	.	A	.	.	LowGQX	END=220162167	GT	./.
chr1	220170323	.	A	.	.	LowGQX	END=220170686	GT	./.
chr1	220174478	.	A	.	.	LowGQX	END=220174489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220174490	.	G	.	.	LowGQX	.	GT	./.
chr1	220174491	.	T	.	.	LowGQX	END=220174496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220174497	.	C	.	.	LowGQX	END=220174599	GT	./.
chr1	220178588	.	A	.	.	LowGQX	END=220178747	GT	./.
chr1	220179446	.	A	.	.	LowGQX	END=220179657	GT	./.
chr1	220180542	.	A	.	.	LowGQX	END=220180682	GT	./.
chr1	220184286	.	A	.	.	LowGQX	END=220184400	GT	./.
chr1	220191428	.	A	.	.	LowGQX	END=220191455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220191456	.	A	.	.	LowGQX	.	GT	./.
chr1	220191457	.	T	.	.	LowGQX	END=220191467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220191468	.	C	.	.	LowGQX	.	GT	./.
chr1	220191469	.	T	.	.	LowGQX	END=220191509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	220191510	.	T	.	.	LowGQX	.	GT	./.
chr1	220191511	.	G	.	.	LowGQX	END=220191513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220191514	.	G	.	.	LowGQX	.	GT	./.
chr1	220191515	.	A	.	.	LowGQX	END=220191527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220191771	.	C	.	.	LowGQX	END=220191870	GT	./.
chr1	220192330	.	A	.	.	LowGQX	END=220192429	GT	./.
chr1	220193328	.	A	.	.	LowGQX	END=220193346	GT	./.
chr1	220193347	.	T	.	.	LowGQX	END=220193502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220193503	.	A	.	.	LowGQX	END=220193565	GT	./.
chr1	220195687	.	A	.	.	LowGQX	.	GT	./.
chr1	220195688	.	C	.	.	LowGQX	END=220195696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220195697	.	A	.	.	LowGQX	.	GT	./.
chr1	220195698	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220195699	.	T	.	.	LowGQX	.	GT	./.
chr1	220195700	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220195701	.	C	.	.	LowGQX	.	GT	./.
chr1	220195702	.	C	.	.	LowGQX	END=220195705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220195706	.	T	.	.	LowGQX	.	GT	./.
chr1	220195707	.	C	.	.	LowGQX	END=220195716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220195717	.	G	.	.	LowGQX	.	GT	./.
chr1	220195718	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220195719	.	T	.	.	LowGQX	END=220195720	GT	./.
chr1	220195721	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220195722	.	A	.	.	LowGQX	.	GT	./.
chr1	220195723	.	T	.	.	LowGQX	END=220195727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220195728	.	C	.	.	LowGQX	.	GT	./.
chr1	220195729	.	A	.	.	LowGQX	END=220195731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220195732	.	G	.	.	LowGQX	END=220195733	GT	./.
chr1	220195734	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220195735	.	A	.	.	LowGQX	END=220195737	GT	./.
chr1	220195738	.	G	.	.	LowGQX	END=220195739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220195740	.	G	.	.	LowGQX	.	GT	./.
chr1	220195741	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220195742	.	T	.	.	LowGQX	.	GT	./.
chr1	220195743	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220195744	.	G	.	.	LowGQX	END=220195746	GT	./.
chr1	220195747	.	C	.	.	LowGQX	END=220195748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220195749	.	C	.	.	LowGQX	.	GT	./.
chr1	220195750	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220195751	.	C	.	.	LowGQX	.	GT	./.
chr1	220195752	.	A	.	.	LowGQX	END=220195754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220195755	.	C	.	.	LowGQX	.	GT	./.
chr1	220195756	.	A	.	.	LowGQX	END=220195765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220195766	.	A	.	.	LowGQX	.	GT	./.
chr1	220195767	.	C	.	.	LowGQX	END=220195770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220195771	.	T	.	.	LowGQX	END=220195862	GT	./.
chr1	220197604	.	A	.	.	LowGQX	END=220197800	GT	./.
chr1	220198366	.	A	.	.	LowGQX	END=220198602	GT	./.
chr1	220203726	.	A	.	.	LowGQX	END=220203825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220205727	.	A	.	.	LowGQX	END=220205906	GT	./.
chr1	220206842	.	A	.	.	LowGQX	.	GT	./.
chr1	220206843	.	C	.	.	LowGQX	END=220206857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220206858	.	C	.	.	LowGQX	.	GT	./.
chr1	220206859	.	A	.	.	LowGQX	END=220206962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220206963	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	220206964	.	A	.	.	LowGQX	END=220206999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220207000	.	T	.	.	LowGQX	.	GT	./.
chr1	220207001	.	C	.	.	LowGQX	END=220207014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220207015	.	G	.	.	LowGQX	.	GT	./.
chr1	220207016	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220207017	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	220207018	.	A	.	.	LowGQX	END=220207028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220207029	.	G	.	.	LowGQX	END=220207030	GT	./.
chr1	220207031	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220208196	.	T	.	.	LowGQX	END=220208357	GT	./.
chr1	220213520	.	C	.	.	LowGQX	END=220213619	GT	./.
chr1	220219658	.	C	.	.	LowGQX	END=220219757	GT	./.
chr1	220231073	.	G	.	.	LowGQX	END=220231259	GT	./.
chr1	220232184	.	C	.	.	LowGQX	END=220232336	GT	./.
chr1	220233026	.	A	.	.	LowGQX	END=220233135	GT	./.
chr1	220236097	.	A	.	.	LowGQX	END=220236298	GT	./.
chr1	220239387	.	G	.	.	LowGQX	END=220239486	GT	./.
chr1	220240640	.	A	.	.	LowGQX	END=220240739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220242701	.	A	.	.	LowGQX	END=220242725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	220242726	.	C	.	.	LowGQX	.	GT	./.
chr1	220242727	.	T	.	.	LowGQX	END=220242754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	220242755	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	220242756	.	G	.	.	LowGQX	END=220242762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	220242763	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	220242764	.	C	.	.	LowGQX	END=220242766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	220242767	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	220242768	.	C	.	.	LowGQX	END=220242782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220242783	.	A	.	.	LowGQX	.	GT	./.
chr1	220242784	.	A	.	.	LowGQX	END=220242785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220242786	.	A	.	.	LowGQX	END=220242787	GT	./.
chr1	220242788	.	G	.	.	LowGQX	END=220242793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220242794	.	A	.	.	LowGQX	.	GT	./.
chr1	220242795	.	G	.	.	LowGQX	END=220242797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220242798	.	A	.	.	LowGQX	END=220242800	GT	./.
chr1	220246190	.	A	.	.	LowGQX	END=220246301	GT	./.
chr1	220247257	.	A	.	.	LowGQX	END=220247269	GT	./.
chr1	220247270	.	A	.	.	LowGQX	END=220247272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220247273	.	C	.	.	LowGQX	.	GT	./.
chr1	220247274	.	A	.	.	LowGQX	END=220247279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220247280	.	T	.	.	LowGQX	.	GT	./.
chr1	220247281	.	T	.	.	LowGQX	END=220247284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220247285	.	A	.	.	LowGQX	.	GT	./.
chr1	220247286	.	A	.	.	LowGQX	END=220247288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220247289	.	A	.	.	LowGQX	.	GT	./.
chr1	220247290	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220247291	.	G	.	.	LowGQX	.	GT	./.
chr1	220247292	.	T	.	.	LowGQX	END=220247299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220247300	.	G	.	.	LowGQX	.	GT	./.
chr1	220247301	.	A	.	.	LowGQX	END=220247326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220247327	.	G	.	.	LowGQX	.	GT	./.
chr1	220247328	.	A	.	.	LowGQX	END=220247370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220247371	.	G	.	.	LowGQX	.	GT	./.
chr1	220247372	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220247373	.	G	.	.	LowGQX	.	GT	./.
chr1	220247374	.	C	.	.	LowGQX	END=220247376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220247377	.	A	.	.	LowGQX	.	GT	./.
chr1	220247378	.	T	.	.	LowGQX	END=220247404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220247405	.	T	.	.	LowGQX	.	GT	./.
chr1	220247406	.	G	.	.	LowGQX	END=220247415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220253067	.	A	.	.	LowGQX	END=220253190	GT	./.
chr1	220267557	.	C	.	.	LowGQX	END=220267827	GT	./.
chr1	220269444	.	A	.	.	LowGQX	END=220269570	GT	./.
chr1	220273830	.	A	.	.	LowGQX	END=220273861	GT	./.
chr1	220273862	.	A	.	.	LowGQX	END=220273961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220273962	.	A	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	220273963	.	T	.	.	LowGQX	END=220274019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220275439	.	T	.	.	LowGQX	END=220275621	GT	./.
chr1	220275680	.	A	.	.	LowGQX	END=220275779	GT	./.
chr1	220275835	.	A	.	.	LowGQX	END=220275948	GT	./.
chr1	220276025	.	A	.	.	LowGQX	END=220276124	GT	./.
chr1	220276787	.	A	.	.	LowGQX	END=220276798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220276799	.	G	.	.	LowGQX	.	GT	./.
chr1	220276800	.	T	.	.	LowGQX	END=220276802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220276803	.	A	.	.	LowGQX	.	GT	./.
chr1	220276804	.	A	.	.	LowGQX	END=220276808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220276809	.	C	.	.	LowGQX	END=220276873	GT	./.
chr1	220276874	.	A	.	.	LowGQX	END=220276906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220279231	.	A	.	.	LowGQX	END=220279404	GT	./.
chr1	220280399	.	A	.	.	LowGQX	END=220280498	GT	./.
chr1	220284126	.	A	.	.	LowGQX	END=220284241	GT	./.
chr1	220284242	.	G	.	.	LowGQX	END=220284281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220287624	.	C	.	.	LowGQX	END=220287818	GT	./.
chr1	220291145	.	C	.	.	LowGQX	END=220291304	GT	./.
chr1	220291439	.	G	.	.	LowGQX	END=220291591	GT	./.
chr1	220298577	.	A	.	.	LowGQX	END=220298640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220298641	.	T	.	.	LowGQX	END=220298683	GT	./.
chr1	220300030	.	A	.	.	LowGQX	END=220300188	GT	./.
chr1	220307742	.	A	.	.	LowGQX	END=220307854	GT	./.
chr1	220310149	.	A	.	.	LowGQX	END=220310178	GT	./.
chr1	220310179	.	G	.	.	LowGQX	END=220310220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220310221	.	A	.	.	LowGQX	.	GT	./.
chr1	220310222	.	T	.	.	LowGQX	END=220310225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220310226	.	T	.	.	LowGQX	END=220310227	GT	./.
chr1	220310228	.	C	.	.	LowGQX	END=220310233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220310234	.	T	.	.	LowGQX	.	GT	./.
chr1	220310235	.	T	.	.	LowGQX	END=220310246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220310247	.	A	.	.	LowGQX	.	GT	./.
chr1	220310248	.	G	.	.	LowGQX	END=220310250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220310251	.	C	.	.	LowGQX	.	GT	./.
chr1	220310252	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220310253	.	A	.	.	LowGQX	.	GT	./.
chr1	220310254	.	G	.	.	LowGQX	END=220310255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220311258	.	A	.	.	LowGQX	END=220311387	GT	./.
chr1	220312348	.	A	.	.	LowGQX	END=220312483	GT	./.
chr1	220313473	.	A	.	.	LowGQX	END=220313633	GT	./.
chr1	220315143	.	A	.	.	LowGQX	END=220315292	GT	./.
chr1	220316284	.	A	.	.	LowGQX	END=220316478	GT	./.
chr1	220318849	.	A	.	.	LowGQX	END=220318997	GT	./.
chr1	220320833	.	A	.	.	LowGQX	END=220320979	GT	./.
chr1	220324542	.	C	.	.	PASS	END=220324634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	220324635	.	G	.	.	PASS	END=220324773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	220324774	.	T	.	.	PASS	END=220324790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	220324791	.	C	.	.	PASS	END=220324799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	220324897	.	T	.	.	PASS	END=220325044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	220325045	.	T	.	.	PASS	END=220325094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	220325095	.	C	.	.	PASS	END=220325103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	220325104	.	G	.	.	PASS	END=220325114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	220325115	.	A	.	.	PASS	END=220325121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	220325122	.	T	.	.	PASS	END=220325132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:84:60
chr1	220325133	.	T	.	.	PASS	END=220325134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	220325135	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:42:60
chr1	220325136	.	A	.	.	PASS	END=220325149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	220325150	.	G	.	.	PASS	END=220325157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	220326476	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	220326477	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	220326478	.	A	.	.	PASS	END=220326483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	220326484	.	T	.	.	PASS	END=220326494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	220326495	.	A	.	.	PASS	END=220326496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	220326497	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	220326498	.	C	.	.	PASS	END=220326501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	220326502	.	T	.	.	PASS	END=220326505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	220326506	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:18:60
chr1	220326507	.	A	.	.	PASS	END=220326518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	220326519	.	A	.	.	PASS	END=220326525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	220326526	.	C	.	.	PASS	END=220326533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	220326534	.	C	.	.	PASS	END=220326548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	220326549	.	C	.	.	PASS	END=220326556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	220326557	.	G	.	.	PASS	END=220326613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	220326614	.	G	.	.	PASS	END=220326678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	220326679	.	C	.	.	PASS	END=220326695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	220326696	.	T	.	.	PASS	END=220326705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	220326706	.	A	.	.	PASS	END=220326721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	220326722	.	A	.	.	PASS	END=220326773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	220326774	.	C	.	.	PASS	END=220326775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	220326776	.	A	.	.	PASS	END=220326779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:39:60
chr1	220326780	.	A	.	.	PASS	END=220326781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	220326782	.	T	.	.	LowGQX	END=220326799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	220327259	.	T	.	.	PASS	END=220327297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	220327298	.	G	.	.	PASS	END=220327415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	220327416	.	C	.	.	PASS	END=220327446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	220327447	.	G	.	.	PASS	END=220327450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	220330561	.	C	.	.	PASS	END=220330566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	220330567	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:75:60
chr1	220330568	.	G	.	.	PASS	END=220330572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	220330573	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:58:60
chr1	220330574	.	A	.	.	PASS	END=220330595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	220330596	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:45:15:60
chr1	220330597	.	C	.	.	PASS	END=220330618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	220330619	.	T	.	.	PASS	END=220330685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	220330686	.	G	.	.	PASS	END=220330736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	220330737	.	C	.	.	PASS	END=220330769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	220330770	.	A	.	.	PASS	END=220330802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	220330803	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:45:60
chr1	220330804	.	C	.	.	PASS	END=220330816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	220330817	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:36:60
chr1	220330818	.	T	.	.	PASS	END=220330836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	220330837	.	G	.	.	PASS	END=220330846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	220330847	.	T	.	.	PASS	END=220330857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	220330858	.	G	.	.	PASS	END=220330859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	220330860	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:30:60
chr1	220330861	.	C	.	.	PASS	END=220330864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	220330865	.	A	.	.	PASS	END=220330877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	220330878	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:45:60
chr1	220330879	.	A	.	.	PASS	END=220330881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:60:60
chr1	220331093	.	A	.	.	PASS	END=220331102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	220331103	.	A	.	.	PASS	END=220331150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:95:60
chr1	220331151	.	A	.	.	PASS	END=220331242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:81:60
chr1	220331243	.	T	.	.	PASS	END=220331251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	220331252	.	C	.	.	PASS	END=220331268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	220331269	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:72:60
chr1	220332676	.	A	.	.	PASS	END=220332720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	220332721	.	C	.	.	PASS	END=220332814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	220335489	.	T	.	.	PASS	END=220335530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	220335531	.	C	.	.	PASS	END=220335613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	220335614	.	G	.	.	PASS	END=220335649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	220335650	.	A	.	.	PASS	END=220335661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	220338024	.	G	.	.	PASS	END=220338068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	220338069	.	A	.	.	PASS	END=220338150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	220338151	.	A	.	.	PASS	END=220338192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	220340584	.	A	.	.	PASS	END=220340691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	220340692	.	A	.	.	PASS	END=220340735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	220340736	.	G	.	.	PASS	END=220340804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	220340805	.	C	.	.	PASS	END=220340841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	220340842	.	A	.	.	PASS	END=220340852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	220340853	.	C	.	.	PASS	END=220340998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	220340999	.	A	.	.	PASS	END=220341002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	220341003	.	T	.	.	PASS	END=220341022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	220341023	.	G	.	.	PASS	END=220341065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	220341066	.	C	.	.	PASS	END=220341068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:87:60
chr1	220344183	.	C	.	.	PASS	END=220344344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	220344345	.	G	.	.	PASS	END=220344415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	220344416	.	G	.	.	PASS	END=220344513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	220345180	.	C	.	.	PASS	END=220345191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:75:60
chr1	220345192	.	G	.	.	PASS	END=220345202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	220345203	.	G	.	.	PASS	END=220345246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	220345247	.	T	.	.	PASS	END=220345334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	220345335	.	G	.	.	PASS	END=220345342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	220345343	.	T	.	.	PASS	END=220345359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	220345360	.	A	.	.	PASS	END=220345382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	220345383	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:60
chr1	220345384	.	G	.	.	PASS	END=220345399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	220345400	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:87:60
chr1	220345401	.	T	.	.	PASS	END=220345402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	220345403	.	G	.	.	PASS	END=220345404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	220345405	.	A	.	.	PASS	END=220345412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	220345413	.	G	.	.	PASS	END=220345425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	220345426	.	T	.	.	PASS	END=220345440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	220345441	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	220345442	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	220345928	.	T	.	.	PASS	END=220345935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	220345936	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr1	220345937	.	A	.	.	PASS	END=220345941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	220345942	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr1	220345943	.	G	.	.	PASS	END=220345985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	220345986	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:55:60
chr1	220345987	.	T	.	.	PASS	END=220346006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	220346007	.	G	.	.	PASS	END=220346013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	220346014	.	A	.	.	PASS	END=220346135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	220355548	.	T	.	.	PASS	END=220355610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	220355611	.	A	.	.	PASS	END=220355643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	220355644	.	C	.	.	PASS	END=220355715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	220355716	.	G	.	.	PASS	END=220355745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	220356055	.	C	.	.	PASS	END=220356111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	220356112	.	T	.	.	PASS	END=220356209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	220356210	.	T	.	.	PASS	END=220356277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	220356278	.	A	.	.	PASS	END=220356317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	220356318	.	C	.	.	PASS	END=220356324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	220357327	.	A	.	.	PASS	END=220357366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	220357367	.	G	.	.	PASS	END=220357397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	220357398	.	C	.	.	PASS	END=220357531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	220357532	.	T	.	.	PASS	END=220357546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	220357547	.	A	.	.	PASS	END=220357556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	220358942	.	T	.	.	PASS	END=220358962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	220358963	.	A	.	.	PASS	END=220358976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	220358977	.	G	.	.	PASS	END=220359113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	220359114	.	A	.	.	PASS	END=220359127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	220359128	.	A	.	.	PASS	END=220359134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	220362994	.	A	.	.	PASS	END=220362998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	220362999	.	G	.	.	PASS	END=220363027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	220363028	.	G	.	.	PASS	END=220363043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	220363044	.	C	.	.	PASS	END=220363084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	220363085	.	T	.	.	PASS	END=220363160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	220363355	.	T	.	.	PASS	END=220363470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	220363471	.	C	.	.	PASS	END=220363539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	220363668	.	T	.	.	PASS	END=220363700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	220363701	.	A	.	.	PASS	END=220363717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	220363718	.	C	.	.	PASS	END=220363793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	220363794	.	G	.	.	PASS	END=220363861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	220363862	.	C	.	.	PASS	END=220363908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:97:60
chr1	220363909	.	A	.	.	PASS	END=220363913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	220364359	.	A	.	.	PASS	END=220364362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	220364363	.	C	.	.	PASS	END=220364383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	220364384	.	G	.	.	PASS	END=220364419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	220364420	.	T	.	.	PASS	END=220364435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	220364436	.	T	.	.	PASS	END=220364440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	220364441	.	C	.	.	PASS	END=220364452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	220364453	.	G	.	.	PASS	END=220364495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	220364496	.	G	.	.	PASS	END=220364590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	220364591	.	C	.	.	PASS	END=220364603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	220364604	.	T	.	.	PASS	END=220364635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	220364636	.	A	.	.	PASS	END=220364642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	220364643	.	A	.	.	PASS	END=220364652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	220364653	.	A	.	.	PASS	END=220364659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr1	220364660	.	T	.	.	PASS	END=220364676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	220364677	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:54:60
chr1	220366531	.	A	.	.	PASS	END=220366589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	220366590	.	A	.	.	PASS	END=220366609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	220366610	.	A	.	.	PASS	END=220366661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	220366662	.	G	.	.	PASS	END=220366759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	220366760	.	C	.	.	PASS	END=220366772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	220368369	.	T	.	.	PASS	END=220368431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	220368432	.	G	.	.	PASS	END=220368560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	220368589	.	G	.	.	PASS	END=220368659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	220368660	.	A	.	.	PASS	END=220368711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	220368712	.	G	.	.	PASS	END=220368742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	220368743	.	A	.	.	PASS	END=220368770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	220369541	.	A	.	.	PASS	END=220369562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	220369563	.	T	.	.	PASS	END=220369590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	220369591	.	C	.	.	PASS	END=220369631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr1	220369632	.	A	.	.	PASS	END=220369737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:280:99:60
chr1	220369738	.	T	.	.	PASS	END=220369745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:259:99:60
chr1	220369745	.	TA	T	1993.70	PASS	BaseQRankSum=-2.127;DP=260;FS=0.000;HRun=12;HaplotypeScore=677.2498;MQ=60;MQ0=0;MQRankSum=0.184;QD=7.67;ReadPosRankSum=0.767;SB=-761.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:131,93:260:99:2033,0,2518:60:99:0.415
chr1	220369746	.	A	.	370.04	PASS	DP=264;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:155:157:99:60:99
chr1	220369747	.	A	.	.	PASS	END=220369782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr1	220369783	.	C	.	.	PASS	END=220369791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	220373880	.	T	.	.	LowGQX	END=220374018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220375567	.	T	.	.	PASS	END=220375626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	220375627	.	C	.	.	PASS	END=220375657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	220375658	.	A	.	.	PASS	END=220375702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	220375703	.	G	.	.	PASS	END=220375731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	220375732	.	T	.	.	PASS	END=220375767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	220379198	.	T	.	.	PASS	END=220379290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	220379291	.	G	.	.	PASS	END=220379361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	220379362	.	A	.	.	PASS	END=220379399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	220383676	.	A	.	.	PASS	END=220383701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	220383702	.	A	.	.	PASS	END=220383746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	220383747	.	G	.	.	PASS	END=220383797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	220383798	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:67:60
chr1	220383799	.	A	.	.	PASS	END=220383840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:77:60
chr1	220383841	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:63:60
chr1	220383842	.	G	.	.	PASS	END=220383882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:77:60
chr1	220384092	.	C	.	.	PASS	END=220384141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	220384142	.	C	.	.	PASS	END=220384146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	220384147	.	G	.	.	PASS	END=220384170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	220384171	.	G	.	.	PASS	END=220384179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	220384180	.	A	.	.	PASS	END=220384207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	220384208	.	C	.	.	PASS	END=220384306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	220384307	.	T	.	.	PASS	END=220384328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	220384329	.	A	.	.	PASS	END=220384339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	220384340	.	A	.	.	PASS	END=220384352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	220384353	.	A	.	.	PASS	END=220384378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	220384379	.	T	.	.	PASS	END=220384395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	220384625	.	C	.	.	PASS	END=220384645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr1	220384646	.	A	.	.	PASS	END=220384648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr1	220384649	.	A	.	.	PASS	END=220384650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:39:60
chr1	220384651	.	T	.	.	LowGQX	END=220384660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	220384661	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	220384662	.	C	.	.	LowGQX	END=220384667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	220384668	.	A	.	.	LowGQX	END=220384671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	220384672	.	C	.	.	LowGQX	END=220384675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	220384676	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	220384677	.	C	.	.	LowGQX	END=220384679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	220384680	.	C	.	.	LowGQX	END=220384684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	220384685	.	T	.	.	LowGQX	END=220384688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	220384689	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	220384690	.	C	.	.	LowGQX	END=220384700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	220384701	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	220384702	.	C	.	.	LowGQX	END=220384712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	220384713	.	T	.	.	LowGQX	END=220384724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	220386178	.	T	.	.	PASS	END=220386191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	220386192	.	G	.	.	PASS	END=220386252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	220386253	.	C	.	.	PASS	END=220386272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	220386273	.	C	.	.	PASS	END=220386342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	220386343	.	T	.	.	PASS	END=220386361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	220387147	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	220387148	.	T	.	.	PASS	END=220387184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	220387185	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:0:60
chr1	220387186	.	T	.	.	PASS	END=220387189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	220387190	.	A	.	.	PASS	END=220387193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	220387194	.	T	.	.	PASS	END=220387195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	220387196	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:39:60
chr1	220387197	.	C	.	.	PASS	END=220387221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	220387222	.	C	.	.	PASS	END=220387229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	220387230	.	A	.	.	PASS	END=220387233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	220387234	.	C	.	.	PASS	END=220387264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	220387265	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:39:60
chr1	220387266	.	A	.	.	PASS	END=220387287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	220387288	.	T	.	.	PASS	END=220387352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	220387353	.	A	.	.	PASS	END=220387372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:57:60
chr1	220406090	.	A	.	.	PASS	END=220406101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	220406102	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:51:60
chr1	220406103	.	C	.	.	PASS	END=220406135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	220406136	.	C	.	.	PASS	END=220406160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	220406161	.	C	.	.	PASS	END=220406248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	220406249	.	T	.	.	PASS	END=220406256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	220445514	.	A	.	.	PASS	END=220445538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	220445539	.	A	.	.	PASS	END=220445557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:86:60
chr1	220445558	.	C	.	.	PASS	END=220445607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	220445608	.	G	.	.	PASS	END=220445664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	220445665	.	A	.	.	PASS	END=220445689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	220445690	.	A	.	.	PASS	END=220445700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:60
chr1	220445701	.	G	.	.	PASS	END=220445707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	220445708	.	A	.	.	PASS	END=220445709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	220445710	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:39:60
chr1	220445711	.	T	.	.	PASS	END=220445717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	220445718	.	A	.	.	PASS	END=220445719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:51:60
chr1	220445720	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:18:60
chr1	220445721	.	A	.	.	PASS	END=220445730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	220603218	.	T	.	.	LowGQX	END=220603377	GT	./.
chr1	220607647	.	T	.	.	LowGQX	END=220607746	GT	./.
chr1	220607954	.	C	.	.	LowGQX	END=220608053	GT	./.
chr1	220702081	.	C	.	.	LowGQX	END=220702084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702085	.	A	.	.	LowGQX	.	GT	./.
chr1	220702086	.	C	.	.	LowGQX	END=220702114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702115	.	A	.	.	LowGQX	.	GT	./.
chr1	220702116	.	C	.	.	LowGQX	END=220702117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702118	.	A	.	.	LowGQX	.	GT	./.
chr1	220702119	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702120	.	A	.	.	LowGQX	.	GT	./.
chr1	220702121	.	G	.	.	LowGQX	END=220702132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702133	.	A	.	.	LowGQX	.	GT	./.
chr1	220702134	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702135	.	A	.	.	LowGQX	.	GT	./.
chr1	220702136	.	C	.	.	LowGQX	END=220702143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702144	.	A	.	.	LowGQX	.	GT	./.
chr1	220702145	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702146	.	A	.	.	LowGQX	.	GT	./.
chr1	220702147	.	C	.	.	LowGQX	END=220702159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702160	.	A	.	.	LowGQX	.	GT	./.
chr1	220702161	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702162	.	A	.	.	LowGQX	.	GT	./.
chr1	220702163	.	A	.	.	LowGQX	END=220702173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702174	.	C	.	.	LowGQX	END=220702191	GT	./.
chr1	220702192	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702193	.	T	.	.	LowGQX	.	GT	./.
chr1	220702194	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702195	.	A	.	.	LowGQX	END=220702197	GT	./.
chr1	220702198	.	G	.	.	LowGQX	END=220702199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702200	.	G	.	.	LowGQX	.	GT	./.
chr1	220702201	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702202	.	G	.	.	LowGQX	.	GT	./.
chr1	220702203	.	G	.	.	LowGQX	END=220702210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702211	.	A	.	.	LowGQX	.	GT	./.
chr1	220702212	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702213	.	A	.	.	LowGQX	.	GT	./.
chr1	220702214	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702215	.	T	.	.	LowGQX	.	GT	./.
chr1	220702216	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702217	.	T	.	.	LowGQX	.	GT	./.
chr1	220702218	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702219	.	A	.	.	LowGQX	.	GT	./.
chr1	220702220	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702221	.	T	.	.	LowGQX	.	GT	./.
chr1	220702222	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702223	.	A	.	.	LowGQX	.	GT	./.
chr1	220702224	.	C	.	.	LowGQX	END=220702225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702226	.	G	.	.	LowGQX	.	GT	./.
chr1	220702227	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702228	.	A	.	.	LowGQX	END=220702229	GT	./.
chr1	220702230	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702231	.	C	.	.	LowGQX	END=220702232	GT	./.
chr1	220702233	.	C	.	.	LowGQX	END=220702235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220702236	.	T	.	.	LowGQX	.	GT	./.
chr1	220702237	.	C	.	.	LowGQX	END=220702240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220752694	.	A	.	.	LowGQX	END=220752901	GT	./.
chr1	220754389	.	A	.	.	LowGQX	END=220754488	GT	./.
chr1	220771588	.	A	.	.	LowGQX	END=220771591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220771592	.	T	.	.	LowGQX	.	GT	./.
chr1	220771593	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220771594	.	T	.	.	LowGQX	.	GT	./.
chr1	220771595	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220771596	.	C	.	.	LowGQX	.	GT	./.
chr1	220771597	.	A	.	.	LowGQX	END=220771599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220771600	.	T	.	.	LowGQX	.	GT	./.
chr1	220771601	.	A	.	.	LowGQX	END=220771607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220771608	.	T	.	.	LowGQX	.	GT	./.
chr1	220771609	.	T	.	.	LowGQX	END=220771610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220771611	.	A	.	.	LowGQX	.	GT	./.
chr1	220771612	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220771613	.	T	.	.	LowGQX	.	GT	./.
chr1	220771614	.	G	.	.	LowGQX	END=220771615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220771616	.	C	.	.	LowGQX	END=220771617	GT	./.
chr1	220771618	.	C	.	.	LowGQX	END=220771621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220771622	.	G	.	.	LowGQX	.	GT	./.
chr1	220771623	.	C	.	.	LowGQX	END=220771640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220771641	.	A	.	.	LowGQX	.	GT	./.
chr1	220771642	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220771643	.	A	.	.	LowGQX	.	GT	./.
chr1	220771644	.	G	.	.	LowGQX	END=220771645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220771646	.	A	.	.	LowGQX	.	GT	./.
chr1	220771647	.	A	.	.	LowGQX	END=220771656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220771657	.	C	.	.	LowGQX	.	GT	./.
chr1	220771658	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220771659	.	G	.	.	LowGQX	END=220771800	GT	./.
chr1	220773123	.	C	.	.	LowGQX	END=220773222	GT	./.
chr1	220777395	.	C	.	.	LowGQX	END=220777494	GT	./.
chr1	220789209	.	A	.	.	LowGQX	END=220789359	GT	./.
chr1	220791650	.	A	.	.	LowGQX	END=220791890	GT	./.
chr1	220791926	.	G	.	.	LowGQX	END=220792099	GT	./.
chr1	220804375	.	A	.	.	LowGQX	END=220804478	GT	./.
chr1	220805541	.	A	.	.	LowGQX	END=220805700	GT	./.
chr1	220808716	.	A	.	.	LowGQX	END=220808873	GT	./.
chr1	220809173	.	A	.	.	LowGQX	END=220809370	GT	./.
chr1	220823960	.	A	.	.	LowGQX	END=220823990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220823991	.	A	.	.	LowGQX	.	GT	./.
chr1	220823992	.	A	.	.	LowGQX	END=220824114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220824115	.	G	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	220824116	.	C	.	.	LowGQX	END=220824119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220825326	.	A	.	.	LowGQX	END=220825494	GT	./.
chr1	220826440	.	C	.	.	LowGQX	END=220826634	GT	./.
chr1	220826635	.	T	.	.	LowGQX	END=220826696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220831050	.	T	.	.	LowGQX	END=220831204	GT	./.
chr1	220835152	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220835153	.	G	.	.	LowGQX	.	GT	./.
chr1	220835154	.	A	.	.	LowGQX	END=220835193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220835194	.	G	.	.	LowGQX	.	GT	./.
chr1	220835195	.	G	.	.	LowGQX	END=220835267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220835268	.	C	.	.	LowGQX	END=220835510	GT	./.
chr1	220863732	.	G	.	.	LowGQX	END=220863756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220863757	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	220863758	.	C	.	.	LowGQX	END=220863783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220863784	.	A	.	.	LowGQX	END=220864061	GT	./.
chr1	220869952	.	A	.	.	LowGQX	END=220870071	GT	./.
chr1	220870072	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220870073	.	A	.	.	LowGQX	.	GT	./.
chr1	220870074	.	T	.	.	LowGQX	END=220870075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220921866	.	G	.	.	LowGQX	END=220922147	GT	./.
chr1	220927665	.	C	.	.	LowGQX	END=220927764	GT	./.
chr1	220928287	.	A	.	.	LowGQX	END=220928330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220928331	.	C	.	.	LowGQX	.	GT	./.
chr1	220928332	.	C	.	.	LowGQX	END=220928333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220928334	.	A	.	.	LowGQX	.	GT	./.
chr1	220928335	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220928336	.	A	.	.	LowGQX	.	GT	./.
chr1	220928337	.	G	.	.	LowGQX	END=220928366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220928367	.	T	.	.	LowGQX	END=220928368	GT	./.
chr1	220928369	.	A	.	.	LowGQX	END=220928385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220928386	.	A	.	.	LowGQX	END=220928387	GT	./.
chr1	220928388	.	C	.	.	LowGQX	END=220928394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220928395	.	G	.	.	LowGQX	.	GT	./.
chr1	220928396	.	C	.	.	LowGQX	END=220928409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220928410	.	C	.	.	LowGQX	.	GT	./.
chr1	220928411	.	A	.	.	LowGQX	END=220928417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220928418	.	T	.	.	LowGQX	END=220928426	GT	./.
chr1	220928427	.	C	.	.	LowGQX	END=220928432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220928433	.	G	.	.	LowGQX	.	GT	./.
chr1	220928434	.	C	.	.	LowGQX	END=220928436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220928437	.	T	.	.	LowGQX	.	GT	./.
chr1	220928438	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220928439	.	C	.	.	LowGQX	END=220928440	GT	./.
chr1	220928441	.	C	.	.	LowGQX	END=220928464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220934998	.	A	.	.	LowGQX	END=220935164	GT	./.
chr1	220936250	.	A	.	.	LowGQX	END=220936295	GT	./.
chr1	220936296	.	C	.	.	LowGQX	END=220936322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	220936323	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	220936324	.	G	.	.	LowGQX	END=220936328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	220936329	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	220936330	.	A	.	.	LowGQX	END=220936343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	220936344	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	220936345	.	A	.	.	LowGQX	END=220936371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	220936372	.	G	.	.	LowGQX	.	GT	./.
chr1	220936373	.	G	.	.	LowGQX	END=220936388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	220936389	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	220936390	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	220936391	.	A	.	.	LowGQX	END=220936429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	220953288	.	G	.	.	LowGQX	END=220953595	GT	./.
chr1	220955118	.	A	.	.	LowGQX	END=220955245	GT	./.
chr1	220957223	.	A	.	.	LowGQX	END=220957322	GT	./.
chr1	220960274	.	G	.	.	LowGQX	END=220960563	GT	./.
chr1	220964831	.	A	.	.	LowGQX	END=220965008	GT	./.
chr1	220969983	.	A	.	.	LowGQX	END=220970027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220970028	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	220970029	.	C	.	.	LowGQX	END=220970030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220970031	.	G	.	.	LowGQX	END=220970172	GT	./.
chr1	220971214	.	A	.	.	LowGQX	END=220971405	GT	./.
chr1	220971406	.	A	.	.	LowGQX	END=220971407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220971470	.	A	.	.	LowGQX	END=220971478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220971479	.	C	.	.	LowGQX	.	GT	./.
chr1	220971480	.	A	.	.	LowGQX	END=220971560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220971561	.	G	.	.	LowGQX	.	GT	./.
chr1	220971562	.	T	.	.	LowGQX	END=220971569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220978375	.	T	.	.	LowGQX	END=220978380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220978381	.	C	.	.	LowGQX	.	GT	./.
chr1	220978382	.	T	.	.	LowGQX	END=220978393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220978394	.	G	.	.	LowGQX	.	GT	./.
chr1	220978395	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220978396	.	T	.	.	LowGQX	.	GT	./.
chr1	220978397	.	T	.	.	LowGQX	END=220978404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220978405	.	T	.	.	LowGQX	.	GT	./.
chr1	220978406	.	G	.	.	LowGQX	END=220978407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220978408	.	G	.	.	LowGQX	.	GT	./.
chr1	220978409	.	C	.	.	LowGQX	END=220978419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220978420	.	T	.	.	LowGQX	.	GT	./.
chr1	220978421	.	G	.	.	LowGQX	END=220978435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220978436	.	A	.	.	LowGQX	END=220978474	GT	./.
chr1	220978531	.	G	.	.	LowGQX	END=220978630	GT	./.
chr1	220982167	.	A	.	.	LowGQX	END=220982221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220982222	.	T	.	.	LowGQX	.	GT	./.
chr1	220982223	.	C	.	.	LowGQX	END=220982248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220982249	.	T	.	.	LowGQX	.	GT	./.
chr1	220982250	.	C	.	.	LowGQX	END=220982266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220986632	.	A	.	.	LowGQX	END=220986746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	220986747	.	T	.	.	LowGQX	END=220986762	GT	./.
chr1	221053149	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:12:60
chr1	221053150	.	C	.	.	LowGQX	END=221053151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	221053152	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	221053153	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr1	221053154	.	C	.	.	LowGQX	END=221053157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	221053158	.	G	.	.	PASS	END=221053167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	221053168	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:15:60
chr1	221053169	.	C	.	.	PASS	END=221053175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	221053176	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	221053177	.	G	.	.	PASS	END=221053184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	221053185	.	G	.	.	PASS	END=221053188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	221053189	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:21:60
chr1	221053190	.	C	.	.	PASS	END=221053212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	221053213	.	G	.	.	PASS	END=221053217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	221053218	.	G	.	.	PASS	END=221053221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	221053222	.	C	.	.	PASS	END=221053223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	221053224	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:18:60
chr1	221053225	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:51:60
chr1	221053226	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:21:60
chr1	221053227	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:57:60
chr1	221053228	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:36:60
chr1	221053229	.	C	.	.	PASS	END=221053236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	221053237	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:51:60
chr1	221053238	.	C	.	.	PASS	END=221053264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	221053265	.	C	.	.	PASS	END=221053275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr1	221053276	.	G	.	.	PASS	END=221053288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:72:60
chr1	221053289	.	C	.	.	PASS	END=221053322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	221053323	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:73:60
chr1	221053324	.	C	.	.	PASS	END=221053394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	221053395	.	G	.	.	PASS	END=221053401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	221053402	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:69:60
chr1	221053403	.	G	.	.	PASS	END=221053415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	221053416	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:69:60
chr1	221053417	.	C	.	.	PASS	END=221053422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	221053423	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:60:60
chr1	221053424	.	C	.	.	PASS	END=221053437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	221053438	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:66:60
chr1	221053439	.	C	.	.	PASS	END=221053443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	221053444	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:75:60
chr1	221053445	.	C	.	.	PASS	END=221053465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	221053466	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:75:60
chr1	221053467	.	A	.	.	PASS	END=221053468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	221053469	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:71:60
chr1	221053470	.	T	.	.	PASS	END=221053480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	221053481	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:48:60
chr1	221053482	.	C	.	.	PASS	END=221053484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	221053485	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:65:60
chr1	221053486	.	C	.	.	PASS	END=221053539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	221053540	.	C	.	.	PASS	END=221053544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	221053545	.	T	C	939.11	PASS	BaseQRankSum=-0.228;DP=89;Dels=0.00;FS=1.946;HRun=1;HaplotypeScore=13.3521;MQ=60;MQ0=0;MQRankSum=0.809;QD=10.55;ReadPosRankSum=1.655;SB=-297.58	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:51,38:89:99:969,0,1399:60:99:0.427
chr1	221053546	.	C	.	.	PASS	END=221053635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	221053636	.	C	.	.	PASS	END=221053673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	221053674	.	A	.	156.54	PASS	DP=91;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:72:91:99:60:99
chr1	221053675	.	A	.	.	PASS	END=221053707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:84:60
chr1	221053708	.	C	.	.	PASS	END=221053804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	221053805	.	G	.	.	PASS	END=221053828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	221053829	.	T	.	.	PASS	END=221053842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:81:60
chr1	221054485	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	221054486	.	G	.	.	PASS	END=221054501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:59
chr1	221054502	.	G	.	.	PASS	END=221054512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:59
chr1	221054513	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:24:59
chr1	221054514	.	T	.	.	PASS	END=221054533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:59
chr1	221054534	.	A	.	.	PASS	END=221054549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	221054550	.	C	.	.	PASS	END=221054565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	221054566	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:61:60
chr1	221054567	.	C	.	.	PASS	END=221054580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	221054581	.	T	.	.	PASS	END=221054608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	221054609	.	G	.	.	PASS	END=221054643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	221054644	.	C	.	.	PASS	END=221054735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	221054736	.	A	.	.	PASS	END=221054760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	221054761	.	C	G	749.93	PASS	BaseQRankSum=0.363;DP=86;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=-0.398;QD=8.72;ReadPosRankSum=-1.930;SB=-308.38	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:50,36:86:99:780,0,1284:60:99:0.419
chr1	221054762	.	A	.	.	PASS	END=221054766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	221055375	.	A	.	.	LowGQX	END=221055386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	221055387	.	A	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	221055388	.	T	.	.	LowGQX	END=221055396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	221055397	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	221055398	.	A	.	.	LowGQX	.	GT	./.
chr1	221055399	.	C	.	.	LowGQX	END=221055402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	221055403	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:1:60
chr1	221055404	.	A	.	.	LowGQX	END=221055405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:60
chr1	221055406	.	C	.	.	LowGQX	END=221055410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	221055411	.	T	.	.	LowGQX	END=221055413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	221055414	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	221055415	.	G	.	.	LowGQX	END=221055424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	221055425	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:60
chr1	221055426	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	221055427	.	C	.	.	LowGQX	END=221055429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	221055430	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	221055431	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	221055432	.	A	.	.	LowGQX	END=221055437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	221055438	.	G	.	.	LowGQX	END=221055442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	221055443	.	T	.	.	PASS	END=221055445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	221055446	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	221055447	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	221055448	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	221055449	.	A	.	.	PASS	END=221055453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	221055454	.	A	.	.	PASS	END=221055460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	221055461	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:60
chr1	221055462	.	C	.	.	PASS	END=221055470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	221055471	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr1	221055472	.	G	.	.	PASS	END=221055484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	221055485	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:18:60
chr1	221055486	.	T	.	.	PASS	END=221055488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	221055489	.	C	.	.	PASS	END=221055506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	221055507	.	T	.	.	PASS	END=221055514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	221055515	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:57:60
chr1	221055516	.	T	.	.	PASS	END=221055546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	221055547	.	T	.	.	PASS	END=221055571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	221055572	.	G	.	.	PASS	END=221055669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	221055670	.	C	.	.	PASS	END=221055705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:96:60
chr1	221055706	.	C	.	.	PASS	END=221055719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	221055720	.	G	.	.	PASS	END=221055740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	221055741	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:51:60
chr1	221057486	.	C	.	.	LowGQX	END=221057487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr1	221057488	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:39:60
chr1	221057489	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	221057490	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:36:60
chr1	221057491	.	T	.	.	LowGQX	END=221057493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	221057494	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chr1	221057495	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:18:60
chr1	221057496	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	221057497	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:60
chr1	221057498	.	T	.	.	PASS	END=221057500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	221057501	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	221057502	.	T	.	.	PASS	END=221057503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	221057504	.	T	.	.	LowGQX	END=221057505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:21:60
chr1	221057506	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	221057507	.	C	.	.	LowGQX	END=221057509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:60
chr1	221057510	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	221057511	.	T	.	.	LowGQX	END=221057512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	221057513	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	221057514	.	T	.	.	LowGQX	END=221057523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	221057524	.	T	.	.	PASS	END=221057526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	221057527	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:0:60
chr1	221057528	.	G	.	.	PASS	END=221057533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	221057534	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:2:60
chr1	221057535	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr1	221057536	.	G	.	.	PASS	END=221057544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	221057545	.	G	.	.	PASS	END=221057552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	221057553	.	A	.	.	PASS	END=221057554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	221057555	.	A	.	.	LowGQX	END=221057556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	221057557	.	C	.	.	PASS	END=221057564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	221057565	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chr1	221057566	.	G	.	.	PASS	END=221057574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	221057575	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:3:60
chr1	221057576	.	C	.	.	PASS	END=221057577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	221057578	.	C	.	.	PASS	END=221057580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	221057581	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:21:60
chr1	221057582	.	A	.	.	PASS	END=221057585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	221057586	.	A	.	.	PASS	END=221057602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	221057603	.	G	.	.	PASS	END=221057607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	221057608	.	G	.	.	PASS	END=221057616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	221057617	.	G	.	.	PASS	END=221057634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	221057635	.	A	.	.	PASS	END=221057647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	221057648	.	G	.	.	PASS	END=221057665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	221057666	.	G	.	.	PASS	END=221057698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	221057699	.	G	.	.	PASS	END=221057742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	221057743	.	C	.	.	PASS	END=221057770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	221057771	.	G	.	.	PASS	END=221057876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	221057877	.	G	.	.	PASS	END=221057927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	221057928	.	G	.	.	PASS	END=221057945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	221057946	.	G	.	.	PASS	END=221057981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	221057982	.	A	.	.	PASS	END=221058028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	221058029	.	G	.	.	PASS	END=221058054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	221058055	.	A	.	.	PASS	END=221058058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:96:60
chr1	221058059	.	C	.	.	PASS	END=221058067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr1	221058068	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:36:60
chr1	221058069	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:24:60
chr1	221058070	.	C	.	.	PASS	END=221058080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr1	221058081	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:36:60
chr1	221058082	.	G	.	.	PASS	END=221058092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	221058093	.	A	.	.	PASS	END=221058097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	221507178	.	T	.	.	LowGQX	END=221507327	GT	./.
chr1	221509205	.	C	.	.	LowGQX	END=221509429	GT	./.
chr1	221875752	.	T	.	.	LowGQX	END=221875907	GT	./.
chr1	221875908	.	G	.	.	LowGQX	END=221875948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221875949	.	G	.	.	LowGQX	.	GT	./.
chr1	221875950	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221875951	.	T	.	.	LowGQX	.	GT	./.
chr1	221875952	.	G	.	.	LowGQX	END=221875960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221875961	.	G	.	.	LowGQX	.	GT	./.
chr1	221875962	.	C	.	.	LowGQX	END=221875965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221875966	.	A	.	.	LowGQX	.	GT	./.
chr1	221875967	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221875968	.	A	.	.	LowGQX	END=221875969	GT	./.
chr1	221875970	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221875971	.	C	.	.	LowGQX	.	GT	./.
chr1	221875972	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221875973	.	A	.	.	LowGQX	END=221875974	GT	./.
chr1	221875975	.	C	.	.	LowGQX	END=221875976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221875977	.	T	.	.	LowGQX	.	GT	./.
chr1	221875978	.	G	.	.	LowGQX	END=221875979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221875980	.	C	.	.	LowGQX	.	GT	./.
chr1	221875981	.	A	.	.	LowGQX	END=221875983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221875984	.	G	.	.	LowGQX	.	GT	./.
chr1	221875985	.	G	.	.	LowGQX	END=221875991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221875992	.	A	.	.	LowGQX	.	GT	./.
chr1	221875993	.	G	.	.	LowGQX	END=221875998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221875999	.	T	.	.	LowGQX	.	GT	./.
chr1	221876000	.	C	.	.	LowGQX	END=221876001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221876002	.	C	.	.	LowGQX	END=221876003	GT	./.
chr1	221876004	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221876005	.	A	.	.	LowGQX	.	GT	./.
chr1	221876006	.	C	.	.	LowGQX	END=221876014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221876015	.	T	.	.	LowGQX	.	GT	./.
chr1	221876016	.	T	.	.	LowGQX	END=221876021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879435	.	A	.	.	LowGQX	END=221879602	GT	./.
chr1	221879603	.	G	.	.	LowGQX	END=221879606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879607	.	T	.	.	LowGQX	.	GT	./.
chr1	221879608	.	G	.	.	LowGQX	END=221879615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879616	.	T	.	.	LowGQX	.	GT	./.
chr1	221879617	.	G	.	.	LowGQX	END=221879623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879624	.	G	.	.	LowGQX	.	GT	./.
chr1	221879625	.	C	.	.	LowGQX	END=221879629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879630	.	G	.	.	LowGQX	.	GT	./.
chr1	221879631	.	A	.	.	LowGQX	END=221879638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879639	.	G	.	.	LowGQX	.	GT	./.
chr1	221879640	.	G	.	.	LowGQX	END=221879649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879650	.	G	.	.	LowGQX	END=221879652	GT	./.
chr1	221879653	.	T	.	.	LowGQX	END=221879654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879655	.	A	.	.	LowGQX	.	GT	./.
chr1	221879656	.	G	.	.	LowGQX	END=221879664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879665	.	T	.	.	LowGQX	.	GT	./.
chr1	221879666	.	C	.	.	LowGQX	END=221879681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879682	.	G	.	.	LowGQX	.	GT	./.
chr1	221879683	.	T	.	.	LowGQX	END=221879699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879700	.	A	.	.	LowGQX	.	GT	./.
chr1	221879701	.	G	.	.	LowGQX	END=221879702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879703	.	A	.	.	LowGQX	.	GT	./.
chr1	221879704	.	A	.	.	LowGQX	END=221879709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879710	.	A	.	.	LowGQX	.	GT	./.
chr1	221879711	.	G	.	.	LowGQX	END=221879724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879725	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	221879726	.	G	.	.	LowGQX	END=221879731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	221879732	.	C	.	.	LowGQX	END=221879733	GT	./.
chr1	221879734	.	C	.	.	LowGQX	END=221879736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	221879737	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	221879738	.	C	.	.	LowGQX	END=221879739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	221879740	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	221879741	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	221879742	.	C	.	.	LowGQX	END=221879743	GT	./.
chr1	221879744	.	C	.	.	LowGQX	END=221879752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	221879753	.	C	.	.	LowGQX	.	GT	./.
chr1	221879754	.	T	.	.	LowGQX	END=221879764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879765	.	G	.	.	LowGQX	END=221879766	GT	./.
chr1	221879767	.	C	.	.	LowGQX	END=221879768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879769	.	C	.	.	LowGQX	.	GT	./.
chr1	221879770	.	A	.	.	LowGQX	END=221879771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879772	.	A	.	.	LowGQX	.	GT	./.
chr1	221879773	.	G	.	.	LowGQX	END=221879777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879778	.	T	.	.	LowGQX	.	GT	./.
chr1	221879779	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879780	.	A	.	.	LowGQX	.	GT	./.
chr1	221879781	.	T	.	.	LowGQX	END=221879782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879783	.	G	.	.	LowGQX	END=221879784	GT	./.
chr1	221879785	.	T	.	.	LowGQX	END=221879795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879796	.	C	.	.	LowGQX	.	GT	./.
chr1	221879797	.	T	.	.	LowGQX	END=221879805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879806	.	C	.	.	LowGQX	.	GT	./.
chr1	221879807	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221879808	.	C	.	.	LowGQX	END=221879809	GT	./.
chr1	221879810	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221912274	.	A	.	.	LowGQX	END=221912324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	221912325	.	T	.	.	LowGQX	END=221912417	GT	./.
chr1	221912418	.	G	.	.	LowGQX	END=221912447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221912448	.	T	.	.	LowGQX	.	GT	./.
chr1	221912449	.	A	.	.	LowGQX	END=221912452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221912453	.	C	.	.	LowGQX	.	GT	./.
chr1	221912454	.	A	.	.	LowGQX	END=221912457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221912458	.	A	.	.	LowGQX	.	GT	./.
chr1	221912459	.	T	.	.	LowGQX	END=221912464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221912465	.	C	.	.	LowGQX	.	GT	./.
chr1	221912466	.	C	.	.	LowGQX	END=221912480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221912481	.	C	.	.	LowGQX	.	GT	./.
chr1	221912482	.	C	.	.	LowGQX	END=221912504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221912505	.	A	.	.	LowGQX	.	GT	./.
chr1	221912506	.	A	.	.	LowGQX	END=221912509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221912510	.	G	T	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	221912511	.	G	.	.	LowGQX	END=221912514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	221912515	.	G	.	5.79	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:0.01:60:0
chr1	221912516	.	C	.	.	LowGQX	END=221912693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	221912694	.	A	.	.	LowGQX	END=221913088	GT	./.
chr1	222695941	.	G	.	.	LowGQX	END=222696133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222696134	.	C	.	.	LowGQX	.	GT	./.
chr1	222696135	.	A	.	.	LowGQX	END=222696231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222696946	.	G	.	.	LowGQX	END=222697045	GT	./.
chr1	222700302	.	A	.	.	LowGQX	END=222700325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	222700326	.	A	.	.	LowGQX	.	GT	./.
chr1	222700327	.	A	.	.	LowGQX	END=222700353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	222700354	.	A	.	.	LowGQX	END=222700401	GT	./.
chr1	222705306	.	A	.	.	LowGQX	END=222705374	GT	./.
chr1	222705375	.	G	.	.	LowGQX	END=222705455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222711988	.	A	.	.	LowGQX	END=222712118	GT	./.
chr1	222713350	.	A	.	.	LowGQX	END=222713685	GT	./.
chr1	222715352	.	A	.	.	LowGQX	END=222715463	GT	./.
chr1	222715464	.	G	.	.	LowGQX	END=222715477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222715478	.	C	.	.	LowGQX	.	GT	./.
chr1	222715479	.	T	.	.	LowGQX	END=222715487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222715488	.	C	.	.	LowGQX	.	GT	./.
chr1	222715489	.	A	.	.	LowGQX	END=222715492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222715493	.	T	.	.	LowGQX	.	GT	./.
chr1	222715494	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222715495	.	A	.	.	LowGQX	.	GT	./.
chr1	222715496	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222715497	.	C	.	.	LowGQX	END=222715499	GT	./.
chr1	222715500	.	G	.	.	LowGQX	END=222715502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222715503	.	A	.	.	LowGQX	.	GT	./.
chr1	222715504	.	G	.	.	LowGQX	END=222715506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222715507	.	A	.	.	LowGQX	.	GT	./.
chr1	222715508	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222715509	.	A	.	.	LowGQX	.	GT	./.
chr1	222715510	.	A	.	.	LowGQX	END=222715515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222715516	.	A	.	.	LowGQX	.	GT	./.
chr1	222715517	.	C	.	.	LowGQX	END=222715518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222715519	.	A	.	.	LowGQX	END=222715523	GT	./.
chr1	222715524	.	T	.	.	LowGQX	END=222715526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222715527	.	G	.	.	LowGQX	.	GT	./.
chr1	222715528	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222715529	.	A	.	.	LowGQX	.	GT	./.
chr1	222715530	.	T	.	.	LowGQX	END=222715531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222716877	.	A	.	.	LowGQX	END=222716910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222716911	.	A	.	.	LowGQX	.	GT	./.
chr1	222716912	.	G	.	.	LowGQX	END=222716919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222716920	.	A	.	.	LowGQX	.	GT	./.
chr1	222716921	.	A	.	.	LowGQX	END=222716950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222716951	.	A	.	.	LowGQX	.	GT	./.
chr1	222716952	.	C	.	.	LowGQX	END=222716964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222716965	.	C	.	.	LowGQX	.	GT	./.
chr1	222716966	.	A	.	.	LowGQX	END=222716979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222716980	.	A	.	.	LowGQX	END=222716981	GT	./.
chr1	222716982	.	T	.	.	LowGQX	END=222716987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222716988	.	A	.	.	LowGQX	.	GT	./.
chr1	222716989	.	C	.	.	LowGQX	END=222716992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222716993	.	C	.	.	LowGQX	.	GT	./.
chr1	222716994	.	G	.	.	LowGQX	END=222717004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222717005	.	A	.	.	LowGQX	.	GT	./.
chr1	222717006	.	A	.	.	LowGQX	END=222717012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222717013	.	G	.	.	LowGQX	END=222717136	GT	./.
chr1	222717137	.	C	.	.	LowGQX	END=222717139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222717140	.	A	.	.	LowGQX	.	GT	./.
chr1	222717141	.	C	.	.	LowGQX	END=222717145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222717146	.	T	.	.	LowGQX	.	GT	./.
chr1	222717147	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222717148	.	G	.	.	LowGQX	.	GT	./.
chr1	222717149	.	G	.	.	LowGQX	END=222717158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222717159	.	A	.	.	LowGQX	.	GT	./.
chr1	222717160	.	G	.	.	LowGQX	END=222717161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222717162	.	G	.	.	LowGQX	END=222717164	GT	./.
chr1	222717165	.	G	.	.	LowGQX	END=222717167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222717168	.	T	.	.	LowGQX	END=222717169	GT	./.
chr1	222717170	.	C	.	.	LowGQX	END=222717172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222717173	.	T	.	.	LowGQX	.	GT	./.
chr1	222717174	.	C	.	.	LowGQX	END=222717181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222717182	.	T	.	.	LowGQX	.	GT	./.
chr1	222717183	.	G	.	.	LowGQX	END=222717247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222717248	.	T	.	.	LowGQX	.	GT	./.
chr1	222717249	.	G	.	.	LowGQX	END=222717286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222717287	.	T	.	.	LowGQX	END=222717533	GT	./.
chr1	222721064	.	A	.	.	LowGQX	END=222721388	GT	./.
chr1	222732000	.	T	.	.	LowGQX	END=222732116	GT	./.
chr1	222734674	.	G	.	.	LowGQX	END=222734700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222734701	.	T	.	.	LowGQX	.	GT	./.
chr1	222734702	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	222734703	.	T	.	.	LowGQX	.	GT	./.
chr1	222734704	.	A	.	.	LowGQX	END=222734706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	222734707	.	T	.	.	LowGQX	.	GT	./.
chr1	222734708	.	T	.	.	LowGQX	END=222734717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	222734718	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	222734719	.	T	.	.	LowGQX	END=222734725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	222734726	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	222734727	.	C	.	.	LowGQX	END=222734736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	222734737	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	222734738	.	T	.	.	LowGQX	END=222734755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	222734756	.	G	.	.	LowGQX	.	GT	./.
chr1	222734757	.	T	.	.	LowGQX	END=222734760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	222734761	.	T	.	.	LowGQX	.	GT	./.
chr1	222734762	.	T	.	.	LowGQX	END=222734802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	222734803	.	G	C	44.20	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=22.10;SB=-34.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:75,6,0:60:6:1.000
chr1	222734804	.	C	.	.	LowGQX	END=222734847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222734848	.	C	.	.	LowGQX	.	GT	./.
chr1	222734849	.	G	.	.	LowGQX	END=222734862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222736513	.	A	.	.	LowGQX	END=222736682	GT	./.
chr1	222737329	.	G	.	.	LowGQX	END=222737484	GT	./.
chr1	222742696	.	A	.	.	LowGQX	END=222742795	GT	./.
chr1	222742850	.	A	.	.	LowGQX	END=222742897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222742898	.	A	.	.	LowGQX	.	GT	./.
chr1	222742899	.	G	.	.	LowGQX	END=222742913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222742914	.	A	.	.	LowGQX	.	GT	./.
chr1	222742915	.	G	.	.	LowGQX	END=222743012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222743875	.	A	.	.	LowGQX	END=222744009	GT	./.
chr1	222750785	.	A	.	.	LowGQX	END=222750987	GT	./.
chr1	222753049	.	A	.	.	LowGQX	END=222753216	GT	./.
chr1	222757438	.	C	.	.	LowGQX	END=222757641	GT	./.
chr1	222761783	.	A	.	.	LowGQX	END=222761907	GT	./.
chr1	222791411	.	G	.	.	LowGQX	END=222791412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	222791413	.	C	.	.	PASS	END=222791433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	222791434	.	T	.	.	PASS	END=222791440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	222791441	.	G	.	.	PASS	END=222791448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	222791449	.	C	.	.	PASS	END=222791462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	222791463	.	C	.	.	PASS	END=222791482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	222791483	.	C	.	.	PASS	END=222791521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:63:60
chr1	222791522	.	C	.	.	PASS	END=222791526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:72:60
chr1	222791527	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:43:60
chr1	222791528	.	C	.	.	PASS	END=222791538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:72:60
chr1	222791539	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:54:60
chr1	222791540	.	C	.	.	PASS	END=222791573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:72:60
chr1	222791574	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:69:60
chr1	222791575	.	C	.	.	PASS	END=222791586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	222791587	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:66:60
chr1	222794499	.	A	.	.	PASS	END=222794512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	222794513	.	G	.	.	PASS	END=222794549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	222794550	.	T	.	.	PASS	END=222794636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	222798048	.	G	.	.	PASS	END=222798098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	222798099	.	C	.	.	PASS	END=222798105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	222798106	.	G	A	2359.89	PASS	DP=82;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.6281;MQ=60;MQ0=0;QD=28.78;SB=-1347.75	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,82:82:99:2393,181,0:60:99:1.000
chr1	222798107	.	T	.	.	PASS	END=222798203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	222800915	.	A	.	.	PASS	END=222800999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	222801000	.	G	.	.	PASS	END=222801022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	222801023	.	C	.	.	PASS	END=222801076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	222801077	.	C	.	.	PASS	END=222801193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	222801194	.	C	.	.	PASS	END=222801340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	222801341	.	A	.	.	PASS	END=222801479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr1	222801480	.	A	.	.	PASS	END=222801594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	222801595	.	T	.	.	PASS	END=222801744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	222801745	.	G	.	.	PASS	END=222801886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	222801887	.	A	.	.	PASS	END=222802005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	222802006	.	A	G	5126.45	PASS	DP=161;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=13.2569;MQ=60;MQ0=0;QD=31.84;SB=-2247.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,160:161:99:5126,394,0:60:99:1.000
chr1	222802007	.	A	.	.	PASS	END=222802097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	222802098	.	G	.	.	PASS	END=222802153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	222802154	.	C	.	.	PASS	END=222802313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr1	222802314	.	A	.	.	PASS	END=222802402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:60
chr1	222802403	.	A	.	.	PASS	END=222802622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr1	222802623	.	G	.	.	PASS	END=222802676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	222802677	.	A	.	.	PASS	END=222802731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	222802732	.	G	.	.	PASS	END=222802802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr1	222802803	.	T	G	7241.62	PASS	BaseQRankSum=2.202;DP=238;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=15.1703;MQ=60;MQ0=0;MQRankSum=-1.098;QD=30.43;ReadPosRankSum=0.861;SB=-3328.92	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,236:238:99:7242,578,0:60:99:0.992
chr1	222802804	.	G	.	.	PASS	END=222802925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	222802926	.	C	T	7365.84	PASS	BaseQRankSum=1.441;DP=227;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=16.1615;MQ=60;MQ0=0;MQRankSum=1.058;QD=32.45;ReadPosRankSum=-1.395;SB=-3909.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,225:227:99:7366,566,0:60:99:0.996
chr1	222802927	.	G	.	.	PASS	END=222803234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	222803235	.	C	.	.	PASS	END=222803444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr1	222803445	.	A	.	.	PASS	END=222803632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:247:99:60
chr1	222803633	.	T	.	.	PASS	END=222803693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr1	222803694	.	A	.	.	PASS	END=222803728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	222803729	.	A	.	.	PASS	END=222803733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	222805505	.	A	.	.	PASS	END=222805627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr1	222805628	.	A	.	.	PASS	END=222805651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	222805652	.	G	.	.	PASS	END=222805665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	222805666	.	C	.	.	PASS	END=222805670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	222806444	.	A	.	.	PASS	END=222806451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	222806452	.	T	.	.	PASS	END=222806497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	222806498	.	A	.	.	PASS	END=222806593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	222817817	.	A	.	.	LowGQX	END=222817821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222817822	.	A	.	.	LowGQX	.	GT	./.
chr1	222817823	.	C	.	.	LowGQX	END=222817828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222817829	.	A	.	.	LowGQX	.	GT	./.
chr1	222817830	.	C	.	.	LowGQX	END=222817842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222817843	.	C	.	.	LowGQX	END=222817844	GT	./.
chr1	222817845	.	T	.	.	LowGQX	END=222817874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222817875	.	C	.	.	LowGQX	.	GT	./.
chr1	222817876	.	T	.	.	LowGQX	END=222817928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222818894	.	A	.	.	PASS	END=222818902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	222818903	.	C	.	.	PASS	END=222818963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:96:60
chr1	222818964	.	A	.	.	PASS	END=222819022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	222819023	.	T	.	.	PASS	END=222819032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	222821179	.	T	.	.	LowGQX	END=222821338	GT	./.
chr1	222822079	.	T	.	.	PASS	END=222822110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	222822111	.	C	.	.	PASS	END=222822177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	222822178	.	A	.	.	PASS	END=222822231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	222823522	.	A	.	.	PASS	END=222823528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	222823529	.	A	C	607.58	SB	DP=20;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=30.38;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,20:20:51.15:641,51,0:60:51:1.000
chr1	222823530	.	T	.	.	PASS	END=222823541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	222823542	.	G	.	.	PASS	END=222823557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	222823558	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:38:60
chr1	222823559	.	T	.	.	PASS	END=222823566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	222823567	.	T	.	.	PASS	END=222823571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr1	222823572	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:60:60
chr1	222823573	.	A	.	.	PASS	END=222823600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	222823601	.	C	.	.	PASS	END=222823621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	222823626	.	T	.	.	PASS	END=222823658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:87:60
chr1	222823659	.	G	.	.	PASS	END=222823725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	222823965	.	A	.	.	PASS	END=222824022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	222824023	.	G	.	.	PASS	END=222824064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	222824133	.	A	.	.	PASS	END=222824247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	222825247	.	C	.	.	PASS	END=222825257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	222825258	.	G	.	.	PASS	END=222825284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	222825285	.	A	.	.	PASS	END=222825347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	222825348	.	G	.	.	PASS	END=222825397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	222825398	.	T	.	.	PASS	END=222825402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	222825403	.	G	A	3033.26	PASS	DP=95;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=31.93;SB=-1723.48	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,95:95:99:3066,232,0:60:99:1.000
chr1	222825404	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:95:99:60
chr1	222825568	.	A	.	.	PASS	END=222825596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	222825597	.	C	.	.	PASS	END=222825676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	222826348	.	A	.	.	PASS	END=222826439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:320:99:60
chr1	222826440	.	G	.	.	PASS	END=222826474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:287:99:60
chr1	222826568	.	A	.	.	PASS	END=222826621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr1	222826622	.	C	.	.	PASS	END=222826683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	222827563	.	A	.	.	PASS	END=222827641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	222827642	.	T	.	.	PASS	END=222827662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	222827727	.	T	.	.	PASS	END=222827810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	222827811	.	T	.	.	PASS	END=222827826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	222827995	.	A	.	.	PASS	END=222828021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	222828022	.	C	.	.	PASS	END=222828052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	222828053	.	C	.	.	PASS	END=222828113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	222828114	.	A	.	.	PASS	END=222828137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	222832062	.	A	.	.	PASS	END=222832095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	222832096	.	A	.	.	PASS	END=222832167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	222832776	.	A	.	.	PASS	END=222832870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	222832871	.	C	.	.	PASS	END=222832874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	222832875	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:178:99:60
chr1	222832932	.	A	.	.	PASS	END=222832999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	222833000	.	G	.	.	PASS	END=222833029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	222833030	.	T	.	.	PASS	END=222833031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	222833060	.	T	.	.	PASS	END=222833159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	222833246	.	A	.	.	PASS	END=222833344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	222833345	.	A	.	.	PASS	END=222833350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	222833517	.	A	.	.	PASS	END=222833580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	222833581	.	C	.	.	PASS	END=222833600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	222833601	.	T	C	2473.69	PASS	DP=83;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=7.6258;MQ=60;MQ0=0;QD=29.80;SB=-1211.20	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,83:83:99:2507,190,0:60:99:1.000
chr1	222833602	.	G	.	.	PASS	END=222833658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	222835383	.	T	.	.	PASS	END=222835404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:94:60
chr1	222835405	.	G	.	.	PASS	END=222835411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	222835412	.	C	.	.	PASS	END=222835482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	222835585	.	T	.	.	PASS	END=222835630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	222835631	.	G	.	.	PASS	END=222835665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	222835666	.	G	.	.	PASS	END=222835684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	222837338	.	A	.	.	PASS	END=222837366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	222837367	.	C	.	.	PASS	END=222837489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	222837490	.	G	.	.	PASS	END=222837492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	222838202	.	A	.	.	LowGQX	END=222838213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	222838214	.	C	.	.	LowGQX	END=222838215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	222838216	.	C	T	124.77	LowGQ;LowGQX;SB	DP=4;Dels=0.00;FS=0.000;HRun=5;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=31.19;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,4:4:12.04:157,12,0:60:12:1.000
chr1	222838217	.	T	.	.	LowGQX	END=222838243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	222838244	.	C	.	.	LowGQX	END=222838245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	222838246	.	C	.	.	LowGQX	END=222838247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	222838248	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	222838249	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	222838250	.	G	.	.	LowGQX	END=222838252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	222838253	.	T	.	.	LowGQX	END=222838254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	222838255	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	222838256	.	C	.	.	LowGQX	END=222838270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	222838271	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	222838272	.	A	.	.	LowGQX	END=222838284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	222838285	.	C	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	222838286	.	A	.	.	LowGQX	END=222838288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	222838289	.	A	.	.	LowGQX	END=222838290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	222838291	.	T	.	.	LowGQX	END=222838294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	222838295	.	T	.	.	LowGQX	END=222838296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	222838297	.	G	.	.	LowGQX	END=222838298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	222838299	.	C	.	.	LowGQX	END=222838300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	222838301	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	222838649	.	A	.	.	PASS	END=222838655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	222838656	.	G	.	.	PASS	END=222838681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	222838682	.	A	.	.	PASS	END=222838780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	222838781	.	T	.	.	PASS	END=222838830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:60
chr1	222838831	.	A	.	.	PASS	END=222838909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	222838910	.	C	.	.	PASS	END=222838931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	222838932	.	T	.	.	PASS	END=222838969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	222843233	.	G	.	.	LowGQX	END=222843333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222843473	.	A	.	.	LowGQX	END=222843594	GT	./.
chr1	222846653	.	A	.	.	LowGQX	END=222846778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222846779	.	T	.	.	LowGQX	.	GT	./.
chr1	222849436	.	A	.	.	LowGQX	END=222849468	GT	./.
chr1	222849469	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	222849470	.	C	.	.	LowGQX	END=222849562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222860270	.	A	.	.	LowGQX	END=222860380	GT	./.
chr1	222860865	.	A	.	.	LowGQX	END=222861018	GT	./.
chr1	222867109	.	A	.	.	LowGQX	END=222867208	GT	./.
chr1	222867529	.	T	.	.	LowGQX	END=222867628	GT	./.
chr1	222876475	.	A	.	.	LowGQX	END=222876574	GT	./.
chr1	222885495	.	G	.	.	LowGQX	END=222885661	GT	./.
chr1	222886055	.	G	.	.	LowGQX	END=222886154	GT	./.
chr1	222889040	.	A	.	.	LowGQX	END=222889144	GT	./.
chr1	222892215	.	T	.	.	LowGQX	END=222892375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222892603	.	A	.	.	LowGQX	END=222892703	GT	./.
chr1	222895689	.	G	.	.	LowGQX	END=222895858	GT	./.
chr1	222897421	.	C	.	.	LowGQX	END=222897520	GT	./.
chr1	222898790	.	A	.	.	LowGQX	END=222898899	GT	./.
chr1	222900505	.	T	.	.	LowGQX	END=222900657	GT	./.
chr1	222902078	.	A	.	.	LowGQX	END=222902152	GT	./.
chr1	222902153	.	T	.	.	LowGQX	END=222902173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222902174	.	A	.	.	LowGQX	.	GT	./.
chr1	222902175	.	G	.	.	LowGQX	END=222902177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222902953	.	T	.	.	LowGQX	END=222903052	GT	./.
chr1	222903367	.	A	.	.	LowGQX	END=222903376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222903377	.	A	.	.	LowGQX	END=222903472	GT	./.
chr1	222903473	.	C	.	.	LowGQX	END=222903521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	222904697	.	A	.	.	LowGQX	END=222904828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222904829	.	G	.	.	LowGQX	END=222904830	GT	./.
chr1	222904831	.	T	.	.	LowGQX	END=222904832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222904833	.	T	.	.	LowGQX	END=222904886	GT	./.
chr1	222905964	.	C	.	.	LowGQX	END=222906063	GT	./.
chr1	222919886	.	T	.	.	LowGQX	END=222920063	GT	./.
chr1	222920341	.	T	.	.	LowGQX	END=222920440	GT	./.
chr1	222922303	.	T	.	.	LowGQX	END=222922421	GT	./.
chr1	222922805	.	A	.	.	LowGQX	END=222922906	GT	./.
chr1	222923221	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222923222	.	G	.	.	LowGQX	.	GT	./.
chr1	222923223	.	T	.	.	LowGQX	END=222923234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222923235	.	A	.	.	LowGQX	.	GT	./.
chr1	222923236	.	A	.	.	LowGQX	END=222923242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222923243	.	C	.	.	LowGQX	END=222923244	GT	./.
chr1	222923245	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222923246	.	A	.	.	LowGQX	.	GT	./.
chr1	222923247	.	T	.	.	LowGQX	END=222923249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222923250	.	C	.	.	LowGQX	.	GT	./.
chr1	222923251	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222923252	.	C	.	.	LowGQX	END=222923253	GT	./.
chr1	222923254	.	C	.	.	LowGQX	END=222923257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222923258	.	A	.	.	LowGQX	.	GT	./.
chr1	222923259	.	A	.	.	LowGQX	END=222923263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222923264	.	A	.	.	LowGQX	END=222923266	GT	./.
chr1	222923267	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222923268	.	T	.	.	LowGQX	.	GT	./.
chr1	222923269	.	G	.	.	LowGQX	END=222923271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222923272	.	A	.	.	LowGQX	END=222923273	GT	./.
chr1	222923274	.	C	.	.	LowGQX	END=222923278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222923279	.	G	.	.	LowGQX	.	GT	./.
chr1	222923280	.	T	.	.	LowGQX	END=222923281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222923282	.	A	.	.	LowGQX	.	GT	./.
chr1	222923283	.	A	.	.	LowGQX	END=222923300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222923301	.	C	.	.	LowGQX	.	GT	./.
chr1	222923302	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222923303	.	A	.	.	LowGQX	.	GT	./.
chr1	222923304	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222923305	.	G	.	.	LowGQX	.	GT	./.
chr1	222923306	.	C	.	.	LowGQX	END=222923308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222923309	.	C	.	.	LowGQX	.	GT	./.
chr1	222923310	.	T	.	.	LowGQX	END=222923314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222923315	.	T	.	.	LowGQX	.	GT	./.
chr1	222923316	.	T	.	.	LowGQX	END=222923336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222923337	.	G	.	.	LowGQX	.	GT	./.
chr1	222923338	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	222923339	.	A	.	.	LowGQX	END=222923402	GT	./.
chr1	223116115	.	T	.	.	PASS	END=223116124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	223116125	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:28:60
chr1	223116126	.	G	.	.	PASS	END=223116153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	223116154	.	A	.	.	PASS	END=223116155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	223116156	.	A	.	.	PASS	END=223116168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	223116169	.	G	.	.	PASS	END=223116202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	223116203	.	T	.	.	PASS	END=223116216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	223116217	.	A	.	.	PASS	END=223116232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	223116233	.	C	.	.	PASS	END=223116245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	223116246	.	C	.	.	PASS	END=223116258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	223116259	.	G	.	.	PASS	END=223116279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	223116280	.	C	.	.	PASS	END=223116304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	223116305	.	G	.	.	PASS	END=223116407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	223116408	.	C	.	.	PASS	END=223116434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	223116435	.	T	.	.	PASS	END=223116452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	223116453	.	T	.	.	PASS	END=223116471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	223116472	.	G	A	853.65	PASS	BaseQRankSum=3.041;DP=73;Dels=0.00;FS=3.434;HRun=1;HaplotypeScore=10.4689;MQ=60;MQ0=0;MQRankSum=0.028;QD=11.69;ReadPosRankSum=0.306;SB=-166.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:41,32:73:99:884,0,1187:60:99:0.438
chr1	223116473	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:73:99:60
chr1	223116474	.	G	T	741.54	PASS	BaseQRankSum=2.070;DP=73;Dels=0.00;FS=5.656;HRun=0;HaplotypeScore=8.5750;MQ=60;MQ0=0;MQRankSum=-1.601;QD=10.16;ReadPosRankSum=0.419;SB=-169.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,31:73:99:772,0,1221:60:99:0.425
chr1	223116475	.	G	.	.	PASS	END=223116499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	223116500	.	T	.	.	PASS	END=223116525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	223116526	.	T	.	.	PASS	END=223116546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	223116547	.	T	.	.	PASS	END=223116548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	223116549	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:72:60
chr1	223116550	.	C	.	.	PASS	END=223116561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	223116562	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:60:60
chr1	223116563	.	C	.	.	PASS	END=223116565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	223116566	.	T	.	.	PASS	END=223116568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	223116569	.	A	.	.	PASS	END=223116575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	223116576	.	T	.	.	PASS	END=223116579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	223116580	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:54:60
chr1	223116581	.	G	.	.	PASS	END=223116584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	223116585	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr1	223116586	.	C	.	.	PASS	END=223116604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	223116605	.	T	.	.	PASS	END=223116610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	223116611	.	T	.	.	PASS	END=223116624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	223116625	.	C	.	.	PASS	END=223116626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	223116627	.	T	.	.	PASS	END=223116638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	223116639	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	223116640	.	C	.	.	PASS	END=223116652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	223116653	.	A	.	.	LowGQX	END=223116656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	223116657	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	223116658	.	C	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	223116659	.	A	.	.	LowGQX	END=223116674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	223116675	.	G	.	.	LowGQX	END=223116681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	223116682	.	A	.	.	LowGQX	END=223116702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223116703	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	223116704	.	A	.	.	LowGQX	END=223116720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223116721	.	T	.	.	LowGQX	.	GT	./.
chr1	223116722	.	G	.	.	LowGQX	END=223116725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223152937	.	C	.	.	LowGQX	END=223152952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	223152953	.	G	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	223152954	.	T	.	.	LowGQX	END=223152959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	223152960	.	G	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	223152961	.	T	.	.	LowGQX	END=223152965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	223152966	.	T	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	223152967	.	C	.	.	LowGQX	END=223152989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	223152990	.	C	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	223152991	.	A	.	.	LowGQX	END=223153036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	223156371	.	T	.	.	PASS	END=223156381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:59
chr1	223156382	.	C	T	1435.91	PASS	DP=44;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=6.6284;MQ=59;MQ0=0;QD=32.63;SB=-503.33	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,44:44:99:1469,114,0:59:99:1.000
chr1	223156383	.	T	.	.	PASS	END=223156399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:59
chr1	223156400	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:52:60
chr1	223156401	.	C	.	.	PASS	END=223156418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:93:60
chr1	223156419	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:51:27:60
chr1	223156420	.	A	.	.	PASS	END=223156423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:78:60
chr1	223156424	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:37:60
chr1	223156425	.	A	.	.	PASS	END=223156456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	223156457	.	G	.	.	PASS	END=223156496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	223156497	.	T	.	.	PASS	END=223156506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:82:60
chr1	223163916	.	G	.	.	PASS	END=223163935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	223163936	.	C	.	.	PASS	END=223163944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	223163945	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:72:60
chr1	223163946	.	A	.	.	PASS	END=223164000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	223164001	.	G	.	.	PASS	END=223164020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	223164021	.	G	.	.	PASS	END=223164077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	223164078	.	T	.	.	PASS	END=223164141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	223164811	.	T	.	.	PASS	END=223164908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	223164909	.	G	.	.	PASS	END=223164990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	223164991	.	T	.	.	PASS	END=223165039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	223165040	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:118:99:60
chr1	223165304	.	C	.	.	PASS	END=223165360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	223165361	.	G	.	.	PASS	END=223165453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	223165454	.	T	.	.	PASS	END=223165474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	223165475	.	A	.	.	PASS	END=223165503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	223168176	.	A	.	.	PASS	END=223168193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	223168194	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:24:60
chr1	223168195	.	T	.	.	PASS	END=223168212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	223168213	.	T	C	436.32	PASS	BaseQRankSum=0.673;DP=28;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8603;MQ=60;MQ0=0;MQRankSum=0.487;QD=15.58;ReadPosRankSum=1.416;SB=-169.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:12,16:28:99:466,0,317:60:99:0.571
chr1	223168214	.	T	.	.	PASS	END=223168218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	223168219	.	A	.	.	PASS	END=223168226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	223168227	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:39:60
chr1	223168228	.	T	.	.	PASS	END=223168246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	223168247	.	G	.	.	PASS	END=223168266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	223168267	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr1	223168268	.	G	.	.	PASS	END=223168325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	223168326	.	T	.	.	PASS	END=223168357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	223168358	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:48:60
chr1	223168359	.	A	.	.	PASS	END=223168375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	223175676	.	A	.	.	LowGQX	END=223175693	GT	./.
chr1	223175694	.	C	.	.	LowGQX	END=223175726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223175727	.	A	.	.	LowGQX	.	GT	./.
chr1	223175728	.	T	.	.	LowGQX	END=223175733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223175734	.	C	.	.	LowGQX	.	GT	./.
chr1	223175735	.	T	.	.	LowGQX	END=223175739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223175740	.	C	.	.	LowGQX	.	GT	./.
chr1	223175741	.	C	.	.	LowGQX	END=223175745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223175746	.	T	.	.	LowGQX	.	GT	./.
chr1	223175747	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	223175748	.	G	.	.	LowGQX	END=223175752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223175753	.	T	.	.	LowGQX	END=223175775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	223175776	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.02:60:9
chr1	223175777	.	C	.	.	LowGQX	END=223175786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	223175787	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	223175788	.	C	.	.	LowGQX	END=223175793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	223175794	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	223175795	.	G	.	.	LowGQX	END=223175804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	223175805	.	A	.	.	LowGQX	END=223175811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	223175812	.	T	.	.	LowGQX	END=223175813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	223175814	.	G	.	.	LowGQX	END=223175832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	223175833	.	C	.	.	LowGQX	END=223175838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	223175839	.	G	.	.	LowGQX	END=223175846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	223175847	.	A	.	.	LowGQX	END=223175853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	223175854	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	223175855	.	G	.	.	LowGQX	END=223175856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	223175857	.	G	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	223175858	.	A	.	.	LowGQX	END=223175859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	223175860	.	A	.	19.40	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.36:60:0
chr1	223175861	.	C	.	.	LowGQX	END=223175865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	223175866	.	C	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	223175867	.	T	.	.	LowGQX	END=223175869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	223175870	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	223175871	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	223175872	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	223175873	.	C	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	223175874	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	223175875	.	T	.	.	LowGQX	END=223175881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	223175882	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	223175883	.	C	.	.	LowGQX	END=223175894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	223175895	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	223175896	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	223175897	.	C	.	.	LowGQX	END=223175898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	223175899	.	A	.	.	LowGQX	END=223175916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	223175917	.	C	.	.	LowGQX	END=223175921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	223175922	.	G	.	.	LowGQX	END=223175924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	223175925	.	C	.	.	LowGQX	END=223175929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	223175930	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	223175931	.	T	.	.	LowGQX	END=223175933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	223175934	.	T	.	.	LowGQX	END=223175935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	223175936	.	G	.	.	LowGQX	END=223175937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	223175938	.	A	.	.	LowGQX	END=223175939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	223175940	.	A	.	.	LowGQX	END=223175941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	223175942	.	G	.	.	LowGQX	END=223175952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	223175953	.	G	.	.	LowGQX	END=223175973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	223175974	.	C	.	.	PASS	END=223175986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	223175987	.	C	.	.	PASS	END=223175995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	223175996	.	C	.	.	PASS	END=223176003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	223176004	.	A	.	.	PASS	END=223176028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	223176029	.	C	.	.	PASS	END=223176107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	223176108	.	C	.	.	PASS	END=223176149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	223176150	.	A	.	.	PASS	END=223176202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	223176203	.	G	.	.	PASS	END=223176236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	223176237	.	C	.	.	PASS	END=223176249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	223176250	.	C	.	.	PASS	END=223176335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	223176336	.	T	.	.	PASS	END=223176485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	223176486	.	T	.	.	PASS	END=223176538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	223176539	.	C	.	.	PASS	END=223176548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	223176549	.	G	.	.	PASS	END=223176565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	223176566	.	C	.	.	PASS	END=223176568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	223176569	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:51:60
chr1	223176570	.	A	.	.	PASS	END=223176624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	223176625	.	C	.	.	PASS	END=223176631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	223176632	.	A	.	.	PASS	END=223176633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	223176634	.	G	.	.	PASS	END=223176642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	223176643	.	T	.	.	PASS	END=223176645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	223176646	.	A	.	.	PASS	END=223176655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	223176656	.	A	.	.	PASS	END=223176673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	223176674	.	C	.	.	PASS	END=223176678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	223176679	.	T	.	.	PASS	END=223176687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	223176688	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:27:60
chr1	223176689	.	A	.	.	PASS	END=223176705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	223176706	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:33:60
chr1	223176707	.	T	.	.	PASS	END=223176716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	223176717	.	G	.	.	PASS	END=223176725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	223176726	.	C	.	.	PASS	END=223176728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	223176729	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:50:60
chr1	223176730	.	T	.	.	PASS	END=223176775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	223176776	.	T	.	.	PASS	END=223176791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	223176792	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:81:60
chr1	223176793	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:42:60
chr1	223176794	.	A	.	.	PASS	END=223176834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	223176835	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:24:60
chr1	223176836	.	A	.	.	PASS	END=223176885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	223176886	.	A	.	.	PASS	END=223176923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	223176924	.	A	.	.	PASS	END=223176934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	223176935	.	G	.	.	PASS	END=223176937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	223176938	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:58:60
chr1	223176939	.	T	.	.	PASS	END=223176944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	223176945	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:66:60
chr1	223176946	.	T	.	.	PASS	END=223176966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	223176967	.	A	.	.	PASS	END=223176977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	223176978	.	C	.	.	PASS	END=223176987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	223176988	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:63:60
chr1	223176989	.	C	.	.	PASS	END=223177054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	223177055	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:57:60
chr1	223177056	.	A	.	.	PASS	END=223177146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	223177147	.	A	.	.	PASS	END=223177198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:81:60
chr1	223177199	.	C	.	.	PASS	END=223177255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	223177256	.	C	.	.	PASS	END=223177311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	223177312	.	A	.	.	PASS	END=223177353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	223177354	.	C	.	.	PASS	END=223177357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	223177358	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:45:60
chr1	223177359	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:81:60
chr1	223177360	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:48:60
chr1	223177361	.	C	.	.	PASS	END=223177373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	223177374	.	T	.	.	PASS	END=223177383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	223177384	.	A	.	.	PASS	END=223177408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	223177409	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:39:60
chr1	223177410	.	A	.	.	PASS	END=223177413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	223177414	.	G	.	.	PASS	END=223177445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	223177446	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr1	223177447	.	A	.	.	PASS	END=223177451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	223177452	.	T	.	.	PASS	END=223177463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	223177464	.	A	.	.	PASS	END=223177472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	223177473	.	C	.	.	PASS	END=223177478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	223177479	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	223177480	.	T	.	.	PASS	END=223177495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	223177496	.	T	.	.	PASS	END=223177503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	223177504	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:1:60
chr1	223177505	.	A	.	.	PASS	END=223177525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	223177526	.	T	.	.	PASS	END=223177530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	223177531	.	A	.	.	PASS	END=223177538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	223177539	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:45:60
chr1	223177540	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:60:60
chr1	223177541	.	A	.	.	PASS	END=223177542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chr1	223177543	.	T	.	.	PASS	END=223177551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	223177552	.	A	.	.	PASS	END=223177556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	223177557	.	A	.	.	PASS	END=223177562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	223177563	.	C	.	.	PASS	END=223177565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	223177566	.	T	.	.	PASS	END=223177567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	223177568	.	T	.	.	PASS	END=223177573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	223177574	.	A	G	329.12	PASS	BaseQRankSum=1.370;DP=28;Dels=0.00;FS=1.815;HRun=1;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=-0.255;QD=11.75;ReadPosRankSum=-1.230;SB=-86.10	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:16,12:28:99:359,0,396:60:99:0.429
chr1	223177575	.	G	.	.	PASS	END=223177578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	223177579	.	T	.	.	PASS	END=223177585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	223177586	.	G	.	.	PASS	END=223177589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	223177590	.	A	.	.	PASS	END=223177595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	223177596	.	A	.	.	PASS	END=223177617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	223177618	.	A	.	.	PASS	END=223177655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	223177656	.	T	.	.	PASS	END=223177662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	223177663	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:48:60
chr1	223177664	.	C	.	.	PASS	END=223177676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	223177677	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:69:60
chr1	223177678	.	T	.	.	PASS	END=223177763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	223177764	.	A	.	.	PASS	END=223177824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:59
chr1	223177825	.	T	.	.	PASS	END=223177872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:59
chr1	223177873	.	C	.	.	PASS	END=223177875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:59
chr1	223177876	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:69:59
chr1	223177877	.	C	.	.	PASS	END=223177892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:59
chr1	223177893	.	T	.	.	PASS	END=223177899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	223177900	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:57:60
chr1	223177901	.	C	.	.	PASS	END=223177904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	223177905	.	T	.	.	PASS	END=223177911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	223177912	.	T	.	.	PASS	END=223177913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:36:60
chr1	223177914	.	G	.	.	PASS	END=223177916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	223177917	.	T	.	.	PASS	END=223177919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	223177920	.	C	.	.	PASS	END=223177922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	223177923	.	T	.	.	PASS	END=223177926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	223177927	.	C	.	.	PASS	END=223177932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	223177933	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:24:60
chr1	223177934	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:63:60
chr1	223177935	.	C	.	.	PASS	END=223177936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	223177937	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:60:60
chr1	223177938	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:60
chr1	223177939	.	A	.	.	PASS	END=223177943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	223177944	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:39:60
chr1	223177945	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:54:60
chr1	223177946	.	A	.	.	PASS	END=223177948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	223177949	.	C	.	.	PASS	END=223177961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	223177962	.	T	.	.	PASS	END=223177967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	223177968	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	223177969	.	G	.	.	PASS	END=223177989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	223177990	.	C	.	.	PASS	END=223177996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	223177997	.	T	.	.	PASS	END=223177999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	223178000	.	C	.	.	PASS	END=223178001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	223178002	.	T	.	.	PASS	END=223178008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	223178009	.	C	.	.	PASS	END=223178011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	223178012	.	C	.	.	PASS	END=223178024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	223178025	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	223178026	.	T	.	.	PASS	END=223178037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	223178038	.	C	.	.	PASS	END=223178042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	223178043	.	G	.	.	PASS	END=223178052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	223178053	.	A	.	.	PASS	END=223178066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	223178067	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	223178068	.	C	.	.	PASS	END=223178075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	223178076	.	A	.	.	PASS	END=223178085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	223178086	.	T	.	.	PASS	END=223178088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	223178089	.	G	.	.	PASS	END=223178093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	223178094	.	A	.	.	PASS	END=223178098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	223178099	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:60
chr1	223178100	.	G	.	.	PASS	END=223178107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	223178108	.	C	.	.	PASS	END=223178109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chr1	223178110	.	C	.	.	PASS	END=223178136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	223178137	.	G	.	.	PASS	END=223178143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	223178144	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:45:60
chr1	223178145	.	C	.	.	PASS	END=223178147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	223178148	.	C	.	.	PASS	END=223178165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	223178166	.	A	.	.	PASS	END=223178167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	223178168	.	T	.	.	PASS	END=223178208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	223178209	.	C	.	.	PASS	END=223178242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	223178243	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:30:60
chr1	223178244	.	A	.	.	PASS	END=223178247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	223178248	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:40:60
chr1	223178249	.	A	.	.	PASS	END=223178286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	223178287	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:39:60
chr1	223178288	.	A	.	.	PASS	END=223178345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	223178346	.	A	.	.	PASS	END=223178358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	223178359	.	A	.	.	PASS	END=223178365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	223178366	.	T	.	.	PASS	END=223178398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	223178399	.	C	.	.	PASS	END=223178426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	223178427	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:39:60
chr1	223178428	.	C	.	.	PASS	END=223178449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	223178450	.	T	.	.	PASS	END=223178483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	223178484	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:48:60
chr1	223178485	.	C	.	.	PASS	END=223178497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	223178498	.	G	.	.	PASS	END=223178503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	223178504	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chr1	223178505	.	C	.	.	PASS	END=223178513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	223178514	.	C	.	.	PASS	END=223178518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	223178519	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:9:60
chr1	223178520	.	G	.	.	PASS	END=223178522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	223178523	.	T	.	.	PASS	END=223178524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	223178525	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	223178526	.	C	.	.	PASS	END=223178535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	223178536	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	223178537	.	T	.	.	PASS	END=223178551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	223178552	.	T	.	.	PASS	END=223178560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	223178561	.	A	C	170.48	PASS	BaseQRankSum=1.096;DP=15;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=-0.993;QD=11.37;ReadPosRankSum=-0.872;SB=-84.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:7,8:15:99:200,0,153:60:99:0.533
chr1	223178562	.	G	.	.	PASS	END=223178583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	223178584	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	223178585	.	T	.	.	PASS	END=223178618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	223178619	.	T	.	.	PASS	END=223178624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	223178625	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:3:60
chr1	223178626	.	A	.	.	PASS	END=223178649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	223178650	.	G	.	.	PASS	END=223178657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	223178658	.	C	.	.	PASS	END=223178673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	223178674	.	T	.	.	PASS	END=223178678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	223178679	.	C	.	.	PASS	END=223178689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	223178690	.	C	.	.	PASS	END=223178697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	223178698	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	223178699	.	A	.	.	PASS	END=223178702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	223178703	.	G	.	.	LowGQX	END=223178705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	223178706	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	223178707	.	A	.	.	LowGQX	END=223178710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	223178711	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	223178712	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	223178713	.	T	.	.	PASS	END=223178715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	223178716	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:21:60
chr1	223178717	.	G	.	.	PASS	END=223178725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	223178726	.	C	.	.	LowGQX	END=223178728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	223178729	.	G	.	.	PASS	END=223178730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	223178731	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:7:60
chr1	223178732	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:39:60
chr1	223178733	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:13:60
chr1	223178734	.	T	.	.	PASS	END=223178741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	223178742	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	223178743	.	G	.	.	PASS	END=223178744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	223178745	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	223178746	.	C	.	.	PASS	END=223178770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	223178771	.	A	.	.	LowGQX	END=223178775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	223178776	.	G	.	.	PASS	END=223178777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	223178778	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	223178779	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	223178780	.	G	.	.	LowGQX	END=223178812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	223178813	.	C	.	.	PASS	END=223178814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	223178815	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	223178816	.	A	.	.	PASS	END=223178820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	223178821	.	A	.	.	LowGQX	END=223178822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	223178823	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	223178824	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	223178825	.	C	.	.	PASS	END=223178828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	223178829	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	223178830	.	A	.	.	PASS	END=223178839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	223178840	.	A	.	.	LowGQX	END=223178841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	223178842	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	223178843	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	223178844	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	223178845	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	223178846	.	T	.	.	PASS	END=223178863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	223178864	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	223178865	.	A	.	.	PASS	END=223178866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	223178867	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	223178868	.	C	.	.	PASS	END=223178882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	223178883	.	G	.	.	LowGQX	END=223178884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	223178885	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	223178886	.	G	.	.	LowGQX	END=223178929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	223178930	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	223178931	.	A	.	.	LowGQX	END=223178933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	223178934	.	A	.	.	LowGQX	END=223178935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	223178936	.	T	.	.	LowGQX	END=223178940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	223178941	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:1:60
chr1	223178942	.	G	.	.	LowGQX	END=223178949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	223178950	.	A	.	.	LowGQX	END=223178951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	223178952	.	A	.	.	LowGQX	END=223178955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	223178956	.	G	.	.	LowGQX	END=223178958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	223178959	.	G	.	.	LowGQX	END=223178964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	223178965	.	C	.	.	LowGQX	END=223178967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	223178968	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	223178969	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	223178970	.	A	.	.	LowGQX	END=223178971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	223178972	.	T	.	.	LowGQX	END=223178974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	223178975	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	223178976	.	C	.	.	LowGQX	END=223178983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	223178984	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	223178985	.	C	.	.	LowGQX	END=223178988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	223178989	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	223178990	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	223178991	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	223178992	.	A	.	.	LowGQX	END=223178996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	223178997	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	223178998	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	223178999	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	223179000	.	G	.	.	LowGQX	END=223179002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	223179003	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	223179004	.	T	.	.	LowGQX	END=223179011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	223179012	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	223179013	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	223179014	.	G	.	.	PASS	END=223179016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	223179017	.	G	.	.	LowGQX	END=223179018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	223179019	.	G	.	.	PASS	END=223179037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	223179038	.	C	.	.	PASS	END=223179064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	223179065	.	C	.	.	PASS	END=223179074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	223179075	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:60
chr1	223179076	.	C	.	.	PASS	END=223179119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	223179120	.	A	.	.	PASS	END=223179162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	223179163	.	C	.	.	PASS	END=223179180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	223179181	.	A	.	.	PASS	END=223179186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	223179187	.	G	.	.	PASS	END=223179204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	223179205	.	T	.	.	PASS	END=223179209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	223179210	.	T	.	.	PASS	END=223179212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	223179213	.	A	.	.	PASS	END=223179219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:39:60
chr1	223179220	.	T	.	.	PASS	END=223179232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	223179233	.	G	.	.	LowGQX	END=223179263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	223179264	.	T	.	.	LowGQX	END=223179265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	223179266	.	A	.	.	LowGQX	END=223179270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	223179271	.	A	.	.	LowGQX	END=223179284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	223179285	.	G	.	.	LowGQX	END=223179321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	223179322	.	A	.	.	LowGQX	END=223179328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	223179329	.	A	.	4.58	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.01:60:0
chr1	223179330	.	A	.	.	LowGQX	END=223179340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	223179341	.	G	.	.	LowGQX	END=223179350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	223179351	.	T	.	.	LowGQX	END=223179363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	223179364	.	T	.	.	LowGQX	END=223179365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	223283746	.	A	.	.	PASS	END=223283751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	223283752	.	A	.	.	PASS	END=223283760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	223283761	.	T	.	.	PASS	END=223283782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	223283783	.	A	.	.	PASS	END=223283784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	223283785	.	T	.	.	PASS	END=223283788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	223283789	.	T	.	.	PASS	END=223283795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	223283796	.	A	.	.	PASS	END=223283801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	223283802	.	A	.	.	PASS	END=223283807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	223283808	.	T	.	.	PASS	END=223283825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	223283826	.	G	.	.	PASS	END=223283845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	223283846	.	T	.	.	PASS	END=223283850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	223283851	.	T	C	321.14	PASS	BaseQRankSum=-1.153;DP=51;Dels=0.00;FS=4.702;HRun=1;HaplotypeScore=4.7771;MQ=60;MQ0=0;MQRankSum=-0.719;QD=6.30;ReadPosRankSum=1.094;SB=-216.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,18:51:99:351,0,940:60:99:0.353
chr1	223283852	.	T	.	.	PASS	END=223283870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	223283871	.	G	.	.	PASS	END=223283902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	223283903	.	T	.	.	PASS	END=223283909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	223283910	.	A	G	2623.51	PASS	DP=92;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=9.5196;MQ=60;MQ0=0;QD=28.52;SB=-1352.43	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,91:92:99:2657,202,0:60:99:1.000
chr1	223283911	.	A	.	.	PASS	END=223283928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	223283929	.	A	.	.	PASS	END=223284026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	223284027	.	G	.	.	PASS	END=223284052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	223284053	.	T	.	.	PASS	END=223284083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	223284084	.	T	.	.	PASS	END=223284214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr1	223284215	.	C	.	.	PASS	END=223284365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:258:99:60
chr1	223284366	.	A	.	.	PASS	END=223284403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	223284404	.	A	.	.	PASS	END=223284436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:292:99:60
chr1	223284437	.	C	.	.	PASS	END=223284598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:352:99:60
chr1	223284599	.	T	C	4970.33	PASS	BaseQRankSum=-0.783;DP=396;Dels=0.00;FS=0.784;HRun=0;HaplotypeScore=14.3070;MQ=60;MQ0=0;MQRankSum=0.796;QD=12.55;ReadPosRankSum=-0.050;SB=-2580.24	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:201,194:396:99:4970,0,5507:60:99:0.491
chr1	223284600	.	T	.	.	PASS	END=223284720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:367:99:60
chr1	223284721	.	C	.	.	PASS	END=223284836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:269:99:60
chr1	223284837	.	A	.	.	PASS	END=223284903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	223284904	.	T	.	.	PASS	END=223284978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	223284979	.	T	.	.	PASS	END=223285110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	223285111	.	G	.	.	PASS	END=223285147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	223285148	.	A	.	.	PASS	END=223285194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	223285195	.	G	.	.	PASS	END=223285288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	223285289	.	A	.	.	PASS	END=223285382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:297:99:60
chr1	223285383	.	C	.	.	PASS	END=223285481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:348:99:60
chr1	223285482	.	C	.	.	PASS	END=223285894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:299:99:60
chr1	223285895	.	A	.	.	PASS	END=223285944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	223285945	.	A	.	.	PASS	END=223286020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	223286021	.	A	.	.	PASS	END=223286068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	223286069	.	A	.	.	PASS	END=223286123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	223286124	.	A	.	.	PASS	END=223286135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	223286136	.	G	.	.	PASS	END=223286160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	223286161	.	C	.	.	PASS	END=223286187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	223286188	.	A	.	.	PASS	END=223286197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	223286198	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:75:60
chr1	223286199	.	T	.	.	PASS	END=223286206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr1	223286207	.	T	.	.	PASS	END=223286213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	223286214	.	T	.	.	PASS	END=223286225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	223286226	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:51:60
chr1	223286227	.	C	.	.	PASS	END=223286234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	223286235	.	T	.	.	PASS	END=223286237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	223286238	.	T	.	.	PASS	END=223286244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	223286245	.	C	.	.	PASS	END=223286256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	223286257	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	223286258	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	223286259	.	T	.	.	LowGQX	END=223286261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	223286262	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	223286263	.	G	.	.	LowGQX	END=223286265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	223286266	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	223286267	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	223286268	.	A	.	.	PASS	END=223286269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	223286270	.	A	.	.	LowGQX	END=223286286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	223286287	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	223286288	.	C	.	.	LowGQX	END=223286294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	223286295	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:1:60
chr1	223286296	.	A	.	.	LowGQX	END=223286300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	223286301	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	223286302	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	223286303	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:60
chr1	223286304	.	A	.	.	LowGQX	END=223286320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	223286321	.	A	.	.	LowGQX	END=223286322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	223286323	.	A	.	.	LowGQX	END=223286324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	223286325	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	223286326	.	A	.	.	LowGQX	END=223286329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	223286330	.	G	.	.	LowGQX	END=223286338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	223286339	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	223286340	.	C	.	.	LowGQX	END=223286356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	223286357	.	T	.	.	LowGQX	END=223286383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	223286384	.	A	.	.	LowGQX	END=223286424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223395499	.	A	.	.	LowGQX	END=223395503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223395504	.	G	.	.	LowGQX	.	GT	./.
chr1	223395505	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223395506	.	A	.	.	LowGQX	.	GT	./.
chr1	223395507	.	G	.	.	LowGQX	END=223395510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223395511	.	A	.	.	LowGQX	END=223395515	GT	./.
chr1	223395516	.	T	.	.	LowGQX	END=223395521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223395522	.	T	.	.	LowGQX	END=223395595	GT	./.
chr1	223395596	.	A	.	.	LowGQX	END=223395597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223395598	.	C	.	.	LowGQX	.	GT	./.
chr1	223396589	.	A	.	.	LowGQX	END=223396849	GT	./.
chr1	223396850	.	C	.	.	LowGQX	END=223396854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223396855	.	A	.	.	LowGQX	.	GT	./.
chr1	223396856	.	C	.	.	LowGQX	END=223396882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223396883	.	A	.	.	LowGQX	.	GT	./.
chr1	223396884	.	C	.	.	LowGQX	END=223396919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223396920	.	A	.	.	LowGQX	.	GT	./.
chr1	223396921	.	C	.	.	LowGQX	END=223396931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223396932	.	A	.	.	LowGQX	.	GT	./.
chr1	223396933	.	C	.	.	LowGQX	END=223396945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223396946	.	G	.	.	LowGQX	.	GT	./.
chr1	223396947	.	T	.	.	LowGQX	END=223396957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223396958	.	A	.	.	LowGQX	.	GT	./.
chr1	223396959	.	C	.	.	LowGQX	END=223396965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223396966	.	G	.	.	LowGQX	.	GT	./.
chr1	223396967	.	A	.	.	LowGQX	END=223396975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223400934	.	A	.	.	LowGQX	END=223401077	GT	./.
chr1	223401078	.	G	.	.	LowGQX	END=223401082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223402537	.	A	.	.	LowGQX	END=223402736	GT	./.
chr1	223408292	.	A	.	.	LowGQX	END=223408481	GT	./.
chr1	223437970	.	A	.	.	LowGQX	END=223438162	GT	./.
chr1	223441842	.	A	.	.	LowGQX	END=223442019	GT	./.
chr1	223465779	.	A	.	.	LowGQX	END=223465995	GT	./.
chr1	223532382	.	G	.	.	LowGQX	END=223532481	GT	./.
chr1	223533489	.	A	.	.	LowGQX	END=223533653	GT	./.
chr1	223536618	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	223536619	.	C	.	.	LowGQX	END=223536630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223536631	.	T	.	.	LowGQX	.	GT	./.
chr1	223536632	.	G	.	.	LowGQX	END=223536695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223536696	.	C	.	.	LowGQX	END=223536697	GT	./.
chr1	223536698	.	G	.	.	LowGQX	END=223536728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223536729	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	223536730	.	A	.	.	LowGQX	END=223536757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223536758	.	C	.	.	LowGQX	END=223536769	GT	./.
chr1	223566816	.	G	.	.	LowGQX	END=223567210	GT	./.
chr1	223567211	.	C	.	.	LowGQX	END=223567213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567214	.	C	.	.	LowGQX	.	GT	./.
chr1	223567215	.	A	.	.	LowGQX	END=223567244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567245	.	G	.	.	LowGQX	.	GT	./.
chr1	223567246	.	A	.	.	LowGQX	END=223567263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567264	.	C	.	.	LowGQX	.	GT	./.
chr1	223567265	.	C	.	.	LowGQX	END=223567267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567268	.	G	.	.	LowGQX	.	GT	./.
chr1	223567269	.	G	.	.	LowGQX	END=223567274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567275	.	C	.	.	LowGQX	.	GT	./.
chr1	223567276	.	T	.	.	LowGQX	END=223567290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567291	.	T	.	.	LowGQX	.	GT	./.
chr1	223567292	.	G	.	.	LowGQX	END=223567297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567298	.	T	.	.	LowGQX	.	GT	./.
chr1	223567299	.	T	.	.	LowGQX	END=223567300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567301	.	A	.	.	LowGQX	.	GT	./.
chr1	223567302	.	G	.	.	LowGQX	END=223567315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567316	.	C	.	.	LowGQX	.	GT	./.
chr1	223567317	.	A	.	.	LowGQX	END=223567327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567328	.	C	.	.	LowGQX	.	GT	./.
chr1	223567329	.	A	.	.	LowGQX	END=223567338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567339	.	G	.	.	LowGQX	END=223567340	GT	./.
chr1	223567341	.	C	.	.	LowGQX	END=223567360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567361	.	C	.	.	LowGQX	END=223567533	GT	./.
chr1	223567534	.	C	.	.	LowGQX	END=223567539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567540	.	G	.	.	LowGQX	.	GT	./.
chr1	223567541	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567542	.	T	.	.	LowGQX	.	GT	./.
chr1	223567543	.	C	.	.	LowGQX	END=223567550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567551	.	G	.	.	LowGQX	.	GT	./.
chr1	223567552	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567553	.	A	.	.	LowGQX	END=223567554	GT	./.
chr1	223567555	.	G	.	.	LowGQX	END=223567556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567557	.	T	.	.	LowGQX	END=223567558	GT	./.
chr1	223567559	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567560	.	A	.	.	LowGQX	.	GT	./.
chr1	223567561	.	A	.	.	LowGQX	END=223567565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567566	.	T	.	.	LowGQX	.	GT	./.
chr1	223567567	.	G	.	.	LowGQX	END=223567571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567572	.	T	.	.	LowGQX	.	GT	./.
chr1	223567573	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567574	.	T	.	.	LowGQX	.	GT	./.
chr1	223567575	.	C	.	.	LowGQX	END=223567576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567577	.	T	.	.	LowGQX	.	GT	./.
chr1	223567578	.	C	.	.	LowGQX	END=223567592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567593	.	T	.	.	LowGQX	END=223567594	GT	./.
chr1	223567595	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567596	.	T	.	.	LowGQX	.	GT	./.
chr1	223567597	.	G	.	.	LowGQX	END=223567604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567605	.	T	.	.	LowGQX	.	GT	./.
chr1	223567606	.	G	.	.	LowGQX	END=223567613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567614	.	G	.	.	LowGQX	.	GT	./.
chr1	223567615	.	T	.	.	LowGQX	END=223567621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567622	.	A	.	.	LowGQX	END=223567624	GT	./.
chr1	223567625	.	G	.	.	LowGQX	END=223567635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567636	.	A	.	.	LowGQX	.	GT	./.
chr1	223567637	.	C	.	.	LowGQX	END=223567683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567684	.	C	.	.	LowGQX	END=223567899	GT	./.
chr1	223567900	.	G	.	.	LowGQX	END=223567979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223567980	.	A	.	.	LowGQX	.	GT	./.
chr1	223567981	.	C	.	.	LowGQX	END=223568072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223568073	.	T	.	.	LowGQX	.	GT	./.
chr1	223568074	.	C	.	.	LowGQX	END=223568120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223568121	.	T	.	.	LowGQX	.	GT	./.
chr1	223568122	.	C	.	.	LowGQX	END=223568145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223568146	.	T	.	.	LowGQX	END=223568394	GT	./.
chr1	223568395	.	G	.	.	LowGQX	END=223568615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223568616	.	C	.	.	LowGQX	END=223568691	GT	./.
chr1	223711374	.	T	.	.	LowGQX	END=223711432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223711433	.	T	.	.	LowGQX	.	GT	./.
chr1	223711434	.	G	.	.	LowGQX	END=223711448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223711449	.	C	.	.	LowGQX	END=223711481	GT	./.
chr1	223712749	.	C	.	.	LowGQX	END=223712848	GT	./.
chr1	223715161	.	G	.	.	LowGQX	END=223715260	GT	./.
chr1	223716449	.	A	.	.	LowGQX	END=223716548	GT	./.
chr1	223717428	.	C	.	.	LowGQX	END=223717545	GT	./.
chr1	223718123	.	T	.	.	LowGQX	END=223718222	GT	./.
chr1	223718577	.	A	.	.	LowGQX	END=223718676	GT	./.
chr1	223722663	.	G	.	.	LowGQX	END=223722678	GT	./.
chr1	223722679	.	A	.	.	LowGQX	END=223722705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223722706	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	223722707	.	A	.	.	LowGQX	END=223722839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223722840	.	A	.	.	LowGQX	END=223722925	GT	./.
chr1	223724303	.	G	.	.	LowGQX	END=223724310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223724311	.	G	.	.	LowGQX	.	GT	./.
chr1	223724312	.	A	.	.	LowGQX	END=223724315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223724316	.	A	.	.	LowGQX	.	GT	./.
chr1	223724317	.	A	.	.	LowGQX	END=223724331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223724332	.	A	.	.	LowGQX	.	GT	./.
chr1	223724333	.	C	.	.	LowGQX	END=223724334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223724335	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	223724336	.	C	.	.	LowGQX	END=223724358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223724359	.	C	.	.	LowGQX	.	GT	./.
chr1	223724360	.	A	.	.	LowGQX	END=223724362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223724363	.	G	.	.	LowGQX	.	GT	./.
chr1	223724364	.	G	.	.	LowGQX	END=223724392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223724393	.	A	.	.	LowGQX	.	GT	./.
chr1	223724394	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	223724395	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223724396	.	C	.	.	LowGQX	.	GT	./.
chr1	223724397	.	A	.	.	LowGQX	END=223724402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223803438	.	T	.	.	LowGQX	END=223803444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803445	.	A	.	.	LowGQX	.	GT	./.
chr1	223803446	.	T	.	.	LowGQX	END=223803451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803452	.	A	.	.	LowGQX	.	GT	./.
chr1	223803453	.	T	.	.	LowGQX	END=223803456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803457	.	A	.	.	LowGQX	END=223803459	GT	./.
chr1	223803460	.	G	.	.	LowGQX	END=223803472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803473	.	A	.	.	LowGQX	.	GT	./.
chr1	223803474	.	C	.	.	LowGQX	END=223803478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803479	.	G	.	.	LowGQX	END=223803480	GT	./.
chr1	223803481	.	C	.	.	LowGQX	END=223803495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803496	.	C	.	.	LowGQX	.	GT	./.
chr1	223803497	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803498	.	A	.	.	LowGQX	.	GT	./.
chr1	223803499	.	A	.	.	LowGQX	END=223803503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803504	.	G	.	.	LowGQX	.	GT	./.
chr1	223803505	.	G	.	.	LowGQX	END=223803506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803507	.	A	.	.	LowGQX	.	GT	./.
chr1	223803508	.	T	.	.	LowGQX	END=223803513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803514	.	C	.	.	LowGQX	.	GT	./.
chr1	223803515	.	C	.	.	LowGQX	END=223803518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803519	.	G	.	.	LowGQX	.	GT	./.
chr1	223803520	.	T	.	.	LowGQX	END=223803521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803522	.	A	.	.	LowGQX	.	GT	./.
chr1	223803523	.	G	.	.	LowGQX	END=223803524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803525	.	C	.	.	LowGQX	.	GT	./.
chr1	223803526	.	C	.	.	LowGQX	END=223803527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803528	.	C	.	.	LowGQX	END=223803529	GT	./.
chr1	223803530	.	G	.	.	LowGQX	END=223803531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803532	.	G	.	.	LowGQX	.	GT	./.
chr1	223803533	.	A	.	.	LowGQX	END=223803535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803536	.	G	.	.	LowGQX	.	GT	./.
chr1	223803537	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803538	.	T	.	.	LowGQX	.	GT	./.
chr1	223803539	.	A	.	.	LowGQX	END=223803543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803544	.	G	.	.	LowGQX	.	GT	./.
chr1	223803545	.	A	.	.	LowGQX	END=223803549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803550	.	C	.	.	LowGQX	.	GT	./.
chr1	223803551	.	A	.	.	LowGQX	END=223803552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803553	.	G	.	.	LowGQX	END=223803554	GT	./.
chr1	223803555	.	A	.	.	LowGQX	END=223803556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803557	.	G	.	.	LowGQX	.	GT	./.
chr1	223803558	.	C	.	.	LowGQX	END=223803562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803563	.	C	.	.	LowGQX	.	GT	./.
chr1	223803564	.	G	.	.	LowGQX	END=223803567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803568	.	A	.	.	LowGQX	END=223803738	GT	./.
chr1	223803739	.	T	.	.	LowGQX	END=223803741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803742	.	A	.	.	LowGQX	END=223803743	GT	./.
chr1	223803744	.	C	.	.	LowGQX	END=223803752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803753	.	C	.	.	LowGQX	END=223803754	GT	./.
chr1	223803755	.	G	.	.	LowGQX	END=223803760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803761	.	T	.	.	LowGQX	.	GT	./.
chr1	223803762	.	A	.	.	LowGQX	END=223803768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803769	.	G	.	.	LowGQX	.	GT	./.
chr1	223803770	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803771	.	T	.	.	LowGQX	END=223803772	GT	./.
chr1	223803773	.	C	.	.	LowGQX	END=223803775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803776	.	C	.	.	LowGQX	END=223803777	GT	./.
chr1	223803778	.	A	.	.	LowGQX	END=223803779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803780	.	G	.	.	LowGQX	.	GT	./.
chr1	223803781	.	C	.	.	LowGQX	END=223803799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803800	.	C	.	.	LowGQX	END=223803802	GT	./.
chr1	223803803	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803804	.	T	.	.	LowGQX	.	GT	./.
chr1	223803805	.	T	.	.	LowGQX	END=223803811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803812	.	A	.	.	LowGQX	END=223803813	GT	./.
chr1	223803814	.	C	.	.	LowGQX	END=223803820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803821	.	T	.	.	LowGQX	.	GT	./.
chr1	223803822	.	G	.	.	LowGQX	END=223803833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803834	.	G	.	.	LowGQX	.	GT	./.
chr1	223803835	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803836	.	T	.	.	LowGQX	END=223803837	GT	./.
chr1	223803838	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223803839	.	A	.	.	LowGQX	.	GT	./.
chr1	223803840	.	G	.	.	LowGQX	END=223803847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223805928	.	G	.	.	LowGQX	END=223805980	GT	./.
chr1	223805981	.	A	.	.	LowGQX	END=223806027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223806994	.	C	.	.	LowGQX	END=223807155	GT	./.
chr1	223807881	.	A	.	.	LowGQX	END=223807980	GT	./.
chr1	223810415	.	G	.	.	LowGQX	END=223810609	GT	./.
chr1	223813499	.	A	.	.	LowGQX	END=223813500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223813501	.	T	.	.	LowGQX	.	GT	./.
chr1	223813502	.	T	.	.	LowGQX	END=223813506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223813507	.	C	.	.	LowGQX	.	GT	./.
chr1	223813508	.	T	.	.	LowGQX	END=223813517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223813518	.	C	.	.	LowGQX	.	GT	./.
chr1	223813519	.	A	.	.	LowGQX	END=223813532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223813533	.	C	.	.	LowGQX	END=223813534	GT	./.
chr1	223813535	.	T	.	.	LowGQX	END=223813541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223813542	.	T	.	.	LowGQX	.	GT	./.
chr1	223813543	.	A	.	.	LowGQX	END=223813553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223813554	.	G	.	.	LowGQX	.	GT	./.
chr1	223813555	.	G	.	.	LowGQX	END=223813585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223813586	.	G	.	.	LowGQX	.	GT	./.
chr1	223813587	.	A	.	.	LowGQX	END=223813598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223814690	.	C	.	.	LowGQX	END=223814711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223814712	.	A	.	.	LowGQX	END=223814859	GT	./.
chr1	223815710	.	C	.	.	LowGQX	END=223815765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223815766	.	G	.	.	LowGQX	.	GT	./.
chr1	223815767	.	T	.	.	LowGQX	END=223815770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223815771	.	A	.	.	LowGQX	.	GT	./.
chr1	223815772	.	A	.	.	LowGQX	END=223815777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223815778	.	G	.	.	LowGQX	.	GT	./.
chr1	223815779	.	C	.	.	LowGQX	END=223815795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223815796	.	G	.	.	LowGQX	.	GT	./.
chr1	223815797	.	C	.	.	LowGQX	END=223815825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223815826	.	A	.	.	LowGQX	.	GT	./.
chr1	223815827	.	C	.	.	LowGQX	END=223815837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223815838	.	G	.	.	LowGQX	END=223815844	GT	./.
chr1	223816363	.	C	.	.	LowGQX	END=223816397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223816398	.	A	.	.	LowGQX	END=223816482	GT	./.
chr1	223830464	.	T	.	.	LowGQX	END=223830497	GT	./.
chr1	223830498	.	T	.	.	LowGQX	END=223830563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223842017	.	T	.	.	LowGQX	END=223842074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223842075	.	G	C	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:33,0,30:60:5:0.500
chr1	223842076	.	A	.	.	LowGQX	END=223842092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223842093	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	223842094	.	C	.	.	LowGQX	END=223842099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223842100	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	223842101	.	C	.	.	LowGQX	END=223842116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223853111	.	C	.	.	LowGQX	END=223853296	GT	./.
chr1	223853297	.	G	.	.	LowGQX	END=223853342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223853343	.	T	.	.	LowGQX	.	GT	./.
chr1	223853344	.	G	.	.	LowGQX	END=223853348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223889422	.	G	.	.	LowGQX	END=223889429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223889430	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	223889431	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223889432	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	223889433	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223889434	.	G	.	.	LowGQX	.	GT	./.
chr1	223889435	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223889436	.	C	.	.	LowGQX	.	GT	./.
chr1	223889437	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223889438	.	G	.	.	LowGQX	.	GT	./.
chr1	223889439	.	G	.	.	LowGQX	END=223889447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223889448	.	T	C	14.85	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.42;SB=-25.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	223889449	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223889450	.	C	.	.	LowGQX	.	GT	./.
chr1	223889451	.	A	.	.	LowGQX	END=223889463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223889464	.	C	.	.	LowGQX	.	GT	./.
chr1	223889465	.	A	.	.	LowGQX	END=223889469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223889470	.	T	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	223889471	.	T	.	.	LowGQX	END=223889472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223889473	.	G	.	.	LowGQX	.	GT	./.
chr1	223889474	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223889475	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	223889476	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223889477	.	G	.	.	LowGQX	END=223889581	GT	./.
chr1	223900245	.	G	.	.	LowGQX	END=223900581	GT	./.
chr1	223905449	.	G	.	.	LowGQX	END=223905531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223905532	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	223905533	.	G	.	.	LowGQX	END=223905548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223931800	.	A	.	.	LowGQX	END=223931922	GT	./.
chr1	223933006	.	A	.	.	LowGQX	END=223933050	GT	./.
chr1	223933051	.	G	.	.	LowGQX	END=223933065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223933066	.	A	.	.	LowGQX	.	GT	./.
chr1	223933067	.	C	.	.	LowGQX	END=223933068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223933069	.	G	.	.	LowGQX	.	GT	./.
chr1	223933070	.	G	.	.	LowGQX	END=223933073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223933074	.	C	.	.	LowGQX	END=223933075	GT	./.
chr1	223933076	.	G	.	.	LowGQX	END=223933087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223933088	.	T	.	.	LowGQX	.	GT	./.
chr1	223933089	.	T	.	.	LowGQX	END=223933090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223933091	.	A	.	.	LowGQX	.	GT	./.
chr1	223933092	.	G	.	.	LowGQX	END=223933120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223933121	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	223933122	.	C	.	.	LowGQX	END=223933143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	223934697	.	A	.	.	LowGQX	END=223934869	GT	./.
chr1	223936673	.	A	.	.	LowGQX	END=223936832	GT	./.
chr1	223938585	.	C	.	.	LowGQX	END=223938684	GT	./.
chr1	223939687	.	T	.	.	LowGQX	END=223939786	GT	./.
chr1	223940496	.	A	.	.	LowGQX	END=223940660	GT	./.
chr1	223943169	.	T	.	.	LowGQX	END=223943356	GT	./.
chr1	223945027	.	C	.	.	LowGQX	END=223945126	GT	./.
chr1	223946912	.	A	.	.	LowGQX	END=223946919	GT	./.
chr1	223946920	.	T	.	.	LowGQX	END=223947039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223947040	.	A	.	.	LowGQX	.	GT	./.
chr1	223947041	.	G	.	.	LowGQX	END=223947043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223947044	.	A	.	.	LowGQX	.	GT	./.
chr1	223947045	.	C	.	.	LowGQX	END=223947069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223947070	.	C	.	.	LowGQX	END=223947076	GT	./.
chr1	223947077	.	T	.	.	LowGQX	END=223947185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223949252	.	C	.	.	LowGQX	END=223949351	GT	./.
chr1	223949871	.	T	.	.	LowGQX	END=223949970	GT	./.
chr1	223951831	.	G	.	.	LowGQX	END=223951884	GT	./.
chr1	223951885	.	A	.	.	LowGQX	END=223951930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223954052	.	C	.	.	LowGQX	END=223954151	GT	./.
chr1	223957528	.	C	.	.	LowGQX	END=223957627	GT	./.
chr1	223958139	.	T	.	.	LowGQX	END=223958238	GT	./.
chr1	223959509	.	A	.	.	LowGQX	END=223959607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223959608	.	T	.	.	LowGQX	END=223959629	GT	./.
chr1	223959863	.	C	.	.	LowGQX	END=223959962	GT	./.
chr1	223962498	.	T	.	.	LowGQX	END=223962597	GT	./.
chr1	223968526	.	T	.	.	LowGQX	END=223968625	GT	./.
chr1	223971815	.	A	.	.	LowGQX	END=223971953	GT	./.
chr1	223971954	.	G	.	.	LowGQX	END=223972018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223976708	.	A	.	.	LowGQX	END=223976878	GT	./.
chr1	223980089	.	A	.	.	LowGQX	END=223980130	GT	./.
chr1	223980131	.	G	.	.	LowGQX	END=223980202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223980203	.	T	.	.	LowGQX	END=223980226	GT	./.
chr1	223981003	.	A	.	.	LowGQX	END=223981144	GT	./.
chr1	223983515	.	A	.	.	LowGQX	END=223984020	GT	./.
chr1	223984021	.	T	.	.	LowGQX	END=223984170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223984171	.	A	.	.	LowGQX	END=223984229	GT	./.
chr1	223984230	.	A	.	.	LowGQX	END=223984259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223984260	.	T	.	.	LowGQX	.	GT	./.
chr1	223984261	.	C	.	.	LowGQX	END=223984290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223984291	.	T	.	.	LowGQX	.	GT	./.
chr1	223984292	.	A	.	.	LowGQX	END=223984294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223985915	.	A	.	.	LowGQX	END=223985916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223985917	.	C	.	.	LowGQX	END=223985938	GT	./.
chr1	223985939	.	G	.	.	LowGQX	END=223986130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223986131	.	A	.	.	LowGQX	END=223986381	GT	./.
chr1	223987599	.	A	.	.	LowGQX	END=223987751	GT	./.
chr1	223988400	.	A	.	.	LowGQX	END=223988559	GT	./.
chr1	223989816	.	A	.	.	LowGQX	END=223989824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223989825	.	T	.	.	LowGQX	.	GT	./.
chr1	223989826	.	T	.	.	LowGQX	END=223989847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223989848	.	T	.	.	LowGQX	.	GT	./.
chr1	223989849	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223989850	.	T	.	.	LowGQX	END=223989851	GT	./.
chr1	223989852	.	G	.	.	LowGQX	END=223989868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223989869	.	T	.	.	LowGQX	.	GT	./.
chr1	223989870	.	C	.	.	LowGQX	END=223989891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223989892	.	A	.	.	LowGQX	.	GT	./.
chr1	223989893	.	T	.	.	LowGQX	END=223989906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223989907	.	T	.	.	LowGQX	.	GT	./.
chr1	223989908	.	C	.	.	LowGQX	END=223989947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223989948	.	C	.	.	LowGQX	END=223990048	GT	./.
chr1	223990431	.	A	.	.	LowGQX	END=223990511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223990512	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	223990513	.	C	.	.	LowGQX	END=223990518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223990519	.	C	.	.	LowGQX	END=223990520	GT	./.
chr1	223990521	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223990522	.	C	.	.	LowGQX	.	GT	./.
chr1	223990523	.	T	.	.	LowGQX	END=223990537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223990538	.	C	.	.	LowGQX	END=223990599	GT	./.
chr1	223990971	.	A	.	.	LowGQX	END=223991068	GT	./.
chr1	223991069	.	G	.	.	LowGQX	END=223991148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	223991149	.	C	.	.	LowGQX	END=223991156	GT	./.
chr1	223991874	.	A	.	.	LowGQX	END=223992073	GT	./.
chr1	223994546	.	A	.	.	LowGQX	END=223994549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	223994550	.	T	.	.	LowGQX	END=223994649	GT	./.
chr1	223998124	.	A	.	.	LowGQX	END=223998223	GT	./.
chr1	224001941	.	C	.	.	LowGQX	END=224001952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224001953	.	C	.	.	LowGQX	.	GT	./.
chr1	224001954	.	C	.	.	LowGQX	END=224002005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224002006	.	A	.	.	LowGQX	.	GT	./.
chr1	224002007	.	A	.	.	LowGQX	END=224002055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224008921	.	C	.	.	LowGQX	END=224008945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224008946	.	A	.	.	LowGQX	END=224009191	GT	./.
chr1	224033259	.	A	.	.	LowGQX	END=224033418	GT	./.
chr1	224102661	.	A	.	.	LowGQX	END=224102820	GT	./.
chr1	224301830	.	A	.	.	LowGQX	END=224302067	GT	./.
chr1	224302068	.	G	.	.	LowGQX	END=224302100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224318172	.	A	.	.	LowGQX	END=224318285	GT	./.
chr1	224321774	.	A	.	.	LowGQX	END=224321952	GT	./.
chr1	224340832	.	T	.	.	LowGQX	END=224341020	GT	./.
chr1	224341021	.	C	.	.	LowGQX	END=224341041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224345052	.	A	.	.	LowGQX	END=224345450	GT	./.
chr1	224363591	.	T	.	.	LowGQX	END=224363598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	224363599	.	G	.	.	LowGQX	.	GT	./.
chr1	224363600	.	G	.	.	LowGQX	END=224363642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	224363643	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	224363644	.	A	.	.	LowGQX	END=224363645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224363646	.	C	.	.	LowGQX	.	GT	./.
chr1	224363647	.	T	.	.	LowGQX	END=224363648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224363649	.	G	.	.	LowGQX	.	GT	./.
chr1	224363650	.	G	.	.	LowGQX	END=224363652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224363653	.	A	.	.	LowGQX	.	GT	./.
chr1	224363654	.	G	.	.	LowGQX	END=224363659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224363660	.	C	.	.	LowGQX	.	GT	./.
chr1	224363661	.	T	.	.	LowGQX	END=224363662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224363663	.	T	.	.	LowGQX	.	GT	./.
chr1	224363664	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224363665	.	A	.	.	LowGQX	END=224363666	GT	./.
chr1	224363667	.	T	.	.	LowGQX	END=224363668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224363669	.	C	.	.	LowGQX	.	GT	./.
chr1	224363670	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224363671	.	T	.	.	LowGQX	.	GT	./.
chr1	224363672	.	T	.	.	LowGQX	END=224363675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224363676	.	T	.	.	LowGQX	.	GT	./.
chr1	224363677	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224363678	.	T	.	.	LowGQX	.	GT	./.
chr1	224363679	.	T	.	.	LowGQX	END=224363682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224363683	.	C	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=8;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	224363684	.	T	.	.	LowGQX	END=224363690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224370976	.	C	.	.	LowGQX	END=224371186	GT	./.
chr1	224377277	.	A	.	.	LowGQX	END=224377288	GT	./.
chr1	224377289	.	A	.	.	LowGQX	END=224377300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224377301	.	C	.	.	LowGQX	.	GT	./.
chr1	224377302	.	T	.	.	LowGQX	END=224377327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224377328	.	A	.	.	LowGQX	.	GT	./.
chr1	224377329	.	T	.	.	LowGQX	END=224377340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224377341	.	A	.	.	LowGQX	.	GT	./.
chr1	224377342	.	T	.	.	LowGQX	END=224377396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224377397	.	A	.	.	LowGQX	.	GT	./.
chr1	224377398	.	T	.	.	LowGQX	END=224377410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224377411	.	G	.	.	LowGQX	.	GT	./.
chr1	224377412	.	G	.	.	LowGQX	END=224377427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224377428	.	A	.	.	LowGQX	.	GT	./.
chr1	224377429	.	G	.	.	LowGQX	END=224377435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224377436	.	T	.	.	LowGQX	.	GT	./.
chr1	224377437	.	A	.	.	LowGQX	END=224377446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224377447	.	T	.	.	LowGQX	.	GT	./.
chr1	224377448	.	G	.	.	LowGQX	END=224377452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224377453	.	T	.	.	LowGQX	.	GT	./.
chr1	224377454	.	G	.	.	LowGQX	END=224377458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224377459	.	T	.	.	LowGQX	.	GT	./.
chr1	224377460	.	T	.	.	LowGQX	END=224377511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224377512	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	224377513	.	G	.	.	LowGQX	END=224377586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224377587	.	C	.	.	LowGQX	END=224378023	GT	./.
chr1	224380032	.	A	.	.	LowGQX	END=224380045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224380046	.	G	.	.	LowGQX	.	GT	./.
chr1	224380047	.	C	.	.	LowGQX	END=224380105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224380106	.	T	.	.	LowGQX	END=224380211	GT	./.
chr1	224415301	.	G	.	.	LowGQX	END=224415400	GT	./.
chr1	224418914	.	A	.	.	LowGQX	END=224419013	GT	./.
chr1	224420898	.	T	.	.	LowGQX	END=224420973	GT	./.
chr1	224420974	.	G	.	.	LowGQX	END=224420980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224420981	.	G	.	.	LowGQX	.	GT	./.
chr1	224420982	.	A	.	.	LowGQX	END=224420985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224420986	.	G	.	.	LowGQX	END=224420987	GT	./.
chr1	224420988	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224420989	.	C	.	.	LowGQX	.	GT	./.
chr1	224420990	.	C	.	.	LowGQX	END=224420991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224420992	.	C	.	.	LowGQX	.	GT	./.
chr1	224420993	.	T	.	.	LowGQX	END=224420996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224420997	.	A	.	.	LowGQX	.	GT	./.
chr1	224424197	.	T	.	.	LowGQX	END=224424271	GT	./.
chr1	224424272	.	G	.	.	LowGQX	END=224424296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224437858	.	G	.	.	LowGQX	END=224438022	GT	./.
chr1	224444666	.	C	.	.	LowGQX	END=224444843	GT	./.
chr1	224455734	.	A	.	.	LowGQX	END=224455792	GT	./.
chr1	224455793	.	T	.	.	LowGQX	END=224455796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224455797	.	T	.	.	LowGQX	END=224455798	GT	./.
chr1	224455799	.	T	.	.	LowGQX	END=224455804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224455805	.	G	.	.	LowGQX	.	GT	./.
chr1	224455806	.	C	.	.	LowGQX	END=224455814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224455815	.	C	.	.	LowGQX	.	GT	./.
chr1	224455816	.	A	.	.	LowGQX	END=224455827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224455828	.	G	.	.	LowGQX	.	GT	./.
chr1	224455829	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	224455830	.	C	.	.	LowGQX	.	GT	./.
chr1	224455831	.	C	.	.	LowGQX	END=224455837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	224463039	.	A	.	.	LowGQX	END=224463162	GT	./.
chr1	224468807	.	T	.	.	LowGQX	END=224468906	GT	./.
chr1	224473726	.	A	.	.	LowGQX	END=224473834	GT	./.
chr1	224475475	.	A	.	.	LowGQX	END=224475697	GT	./.
chr1	224477184	.	A	.	.	LowGQX	END=224477437	GT	./.
chr1	224481967	.	A	.	.	LowGQX	END=224482030	GT	./.
chr1	224482031	.	T	.	.	LowGQX	END=224482115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224484201	.	A	.	.	LowGQX	END=224484322	GT	./.
chr1	224488262	.	A	.	.	LowGQX	END=224488367	GT	./.
chr1	224489331	.	C	.	.	LowGQX	END=224489482	GT	./.
chr1	224490580	.	T	.	.	LowGQX	END=224490627	GT	./.
chr1	224490628	.	G	.	.	LowGQX	END=224490637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	224490638	.	T	.	.	LowGQX	.	GT	./.
chr1	224490639	.	T	.	.	LowGQX	END=224490644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	224490645	.	G	.	.	LowGQX	.	GT	./.
chr1	224490646	.	G	.	.	LowGQX	END=224490655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	224490656	.	T	.	.	LowGQX	END=224490732	GT	./.
chr1	224491423	.	A	.	.	LowGQX	END=224491561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224492427	.	T	.	.	LowGQX	END=224492526	GT	./.
chr1	224492734	.	A	.	.	LowGQX	END=224492870	GT	./.
chr1	224495691	.	A	.	.	LowGQX	END=224495748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224495749	.	A	.	.	LowGQX	END=224495967	GT	./.
chr1	224499481	.	C	.	.	LowGQX	END=224499580	GT	./.
chr1	224500704	.	T	.	.	LowGQX	END=224500857	GT	./.
chr1	224505394	.	A	.	.	LowGQX	END=224505469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224505470	.	C	.	.	LowGQX	.	GT	./.
chr1	224505471	.	T	.	.	LowGQX	END=224505497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224505557	.	T	.	.	LowGQX	END=224505583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224505584	.	T	.	.	LowGQX	.	GT	./.
chr1	224505585	.	T	.	.	LowGQX	END=224505656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224514080	.	T	.	.	LowGQX	END=224514179	GT	./.
chr1	224517752	.	C	.	.	LowGQX	.	GT	./.
chr1	224517753	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224517754	.	A	.	.	LowGQX	.	GT	./.
chr1	224517755	.	G	.	.	LowGQX	END=224517760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224517761	.	C	.	.	LowGQX	.	GT	./.
chr1	224517762	.	A	.	.	LowGQX	END=224517763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224517764	.	A	.	.	LowGQX	END=224517765	GT	./.
chr1	224517766	.	T	.	.	LowGQX	END=224517768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224517769	.	A	.	.	LowGQX	.	GT	./.
chr1	224517770	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224517771	.	A	.	.	LowGQX	.	GT	./.
chr1	224517772	.	C	.	.	LowGQX	END=224517779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224517780	.	A	.	.	LowGQX	.	GT	./.
chr1	224517781	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224517782	.	T	.	.	LowGQX	.	GT	./.
chr1	224517783	.	C	.	.	LowGQX	END=224517796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224517797	.	A	.	.	LowGQX	.	GT	./.
chr1	224517798	.	T	.	.	LowGQX	END=224517799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224517800	.	A	.	.	LowGQX	.	GT	./.
chr1	224517801	.	T	.	.	LowGQX	END=224517802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224517803	.	C	.	.	LowGQX	END=224517805	GT	./.
chr1	224517806	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224517807	.	A	.	.	LowGQX	END=224517808	GT	./.
chr1	224517809	.	C	.	.	LowGQX	END=224517817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224517818	.	T	.	.	LowGQX	.	GT	./.
chr1	224517819	.	C	.	.	LowGQX	END=224517824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224517825	.	T	.	.	LowGQX	.	GT	./.
chr1	224517826	.	T	.	.	LowGQX	END=224517827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224517828	.	A	.	.	LowGQX	.	GT	./.
chr1	224517829	.	T	.	.	LowGQX	END=224517836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224517837	.	G	.	.	LowGQX	.	GT	./.
chr1	224517838	.	T	.	.	LowGQX	END=224517839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224517840	.	T	.	.	LowGQX	END=224517841	GT	./.
chr1	224517842	.	C	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr1	224517843	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224517844	.	A	.	.	LowGQX	.	GT	./.
chr1	224517845	.	A	.	.	LowGQX	END=224517847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224517848	.	C	.	.	LowGQX	END=224517850	GT	./.
chr1	224517851	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224544612	.	C	.	.	LowGQX	END=224544711	GT	./.
chr1	224548125	.	G	.	.	LowGQX	END=224548281	GT	./.
chr1	224553579	.	A	.	.	LowGQX	END=224553625	GT	./.
chr1	224553626	.	C	.	.	LowGQX	END=224553641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224553642	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	224553643	.	C	.	.	LowGQX	END=224553695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	224558983	.	A	.	.	LowGQX	END=224559002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224559003	.	T	.	.	LowGQX	.	GT	./.
chr1	224559004	.	G	.	.	LowGQX	END=224559014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224559015	.	A	.	.	LowGQX	END=224559127	GT	./.
chr1	224563461	.	G	.	.	LowGQX	END=224563560	GT	./.
chr1	224566732	.	G	.	.	LowGQX	END=224566831	GT	./.
chr1	224577440	.	G	.	.	LowGQX	END=224577599	GT	./.
chr1	224581528	.	A	.	.	LowGQX	END=224581533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224581534	.	A	.	.	LowGQX	.	GT	./.
chr1	224581535	.	A	.	.	LowGQX	END=224581570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224581571	.	A	.	.	LowGQX	END=224581717	GT	./.
chr1	224585757	.	C	.	.	LowGQX	END=224585930	GT	./.
chr1	224586207	.	A	.	.	LowGQX	END=224586306	GT	./.
chr1	224586558	.	A	.	.	LowGQX	END=224586738	GT	./.
chr1	224588650	.	A	.	.	LowGQX	END=224588773	GT	./.
chr1	224592130	.	A	.	.	LowGQX	END=224592274	GT	./.
chr1	224599127	.	A	.	.	LowGQX	END=224599269	GT	./.
chr1	224600982	.	T	.	.	LowGQX	END=224601081	GT	./.
chr1	224605960	.	A	.	.	LowGQX	END=224606025	GT	./.
chr1	224606026	.	G	.	.	LowGQX	END=224606082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224606083	.	G	.	.	LowGQX	.	GT	./.
chr1	224606084	.	C	.	.	LowGQX	END=224606110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224606111	.	T	.	.	LowGQX	.	GT	./.
chr1	224606112	.	A	.	.	LowGQX	END=224606120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224607218	.	A	.	.	LowGQX	END=224607319	GT	./.
chr1	224612218	.	A	.	.	LowGQX	END=224612421	GT	./.
chr1	224619134	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224619135	.	T	.	.	LowGQX	.	GT	./.
chr1	224619136	.	A	.	.	LowGQX	END=224619206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224619207	.	A	.	.	LowGQX	END=224619285	GT	./.
chr1	224619382	.	A	.	.	LowGQX	END=224619483	GT	./.
chr1	224621385	.	C	.	.	LowGQX	END=224621807	GT	./.
chr1	224804868	.	C	.	.	LowGQX	END=224804871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224804872	.	C	.	.	LowGQX	.	GT	./.
chr1	224804873	.	G	.	.	LowGQX	END=224804874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224804875	.	C	.	.	LowGQX	.	GT	./.
chr1	224804876	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224804877	.	A	.	.	LowGQX	END=224804878	GT	./.
chr1	224804879	.	G	.	.	LowGQX	END=224804881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224804882	.	C	.	.	LowGQX	.	GT	./.
chr1	224804883	.	T	.	.	LowGQX	END=224804886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224804887	.	C	.	.	LowGQX	END=224804888	GT	./.
chr1	224804889	.	T	.	.	LowGQX	END=224804891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224804892	.	G	.	.	LowGQX	.	GT	./.
chr1	224804893	.	C	.	.	LowGQX	END=224804895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224804896	.	C	.	.	LowGQX	.	GT	./.
chr1	224804897	.	G	.	.	LowGQX	END=224804899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224804900	.	C	.	.	LowGQX	.	GT	./.
chr1	224804901	.	T	.	.	LowGQX	END=224804902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224804903	.	C	.	.	LowGQX	.	GT	./.
chr1	224804904	.	T	.	.	LowGQX	END=224804905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224804906	.	C	.	.	LowGQX	END=224804909	GT	./.
chr1	224804910	.	C	.	.	LowGQX	END=224804913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224804914	.	C	.	.	LowGQX	.	GT	./.
chr1	224804915	.	T	.	.	LowGQX	END=224804916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224804917	.	T	.	.	LowGQX	END=224804918	GT	./.
chr1	224804919	.	G	.	.	LowGQX	END=224804921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224804922	.	C	.	.	LowGQX	.	GT	./.
chr1	224804923	.	T	.	.	LowGQX	END=224804928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224804929	.	C	.	.	LowGQX	.	GT	./.
chr1	224804930	.	T	.	.	LowGQX	END=224804932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224804933	.	G	.	.	LowGQX	.	GT	./.
chr1	224804934	.	C	.	.	LowGQX	END=224804936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224804937	.	A	.	.	LowGQX	.	GT	./.
chr1	224804938	.	T	.	.	LowGQX	END=224804940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224804941	.	T	.	.	LowGQX	END=224804967	GT	./.
chr1	224868645	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224868646	.	G	.	.	LowGQX	.	GT	./.
chr1	224868647	.	T	.	.	LowGQX	END=224868652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224868653	.	G	.	.	LowGQX	.	GT	./.
chr1	224868654	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224868655	.	T	.	.	LowGQX	.	GT	./.
chr1	224868656	.	T	.	.	LowGQX	END=224868677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224868678	.	T	.	.	LowGQX	.	GT	./.
chr1	224868679	.	T	.	.	LowGQX	END=224868744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224872472	.	C	.	.	LowGQX	END=224872550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	224872551	.	T	.	.	LowGQX	END=224872571	GT	./.
chr1	224918162	.	A	.	.	LowGQX	END=224918164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224918165	.	T	.	.	LowGQX	.	GT	./.
chr1	224918166	.	G	.	.	LowGQX	END=224918167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224918168	.	T	.	.	LowGQX	.	GT	./.
chr1	224918169	.	G	.	.	LowGQX	END=224918189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224918190	.	T	.	.	LowGQX	.	GT	./.
chr1	224918191	.	A	.	.	LowGQX	END=224918193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224918194	.	C	.	.	LowGQX	END=224918278	GT	./.
chr1	224922263	.	A	.	.	LowGQX	END=224922410	GT	./.
chr1	224926939	.	G	.	.	LowGQX	END=224926940	GT	./.
chr1	224926941	.	C	.	.	LowGQX	END=224926943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224926944	.	T	.	.	LowGQX	.	GT	./.
chr1	224926945	.	C	.	.	LowGQX	END=224926948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224926949	.	T	.	.	LowGQX	.	GT	./.
chr1	224926950	.	G	.	.	LowGQX	END=224926962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224926963	.	A	.	.	LowGQX	.	GT	./.
chr1	224926964	.	G	.	.	LowGQX	END=224926967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224926968	.	T	.	.	LowGQX	.	GT	./.
chr1	224926969	.	C	.	.	LowGQX	END=224926976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224926977	.	T	.	.	LowGQX	END=224926978	GT	./.
chr1	224926979	.	C	.	.	LowGQX	END=224926982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	224926983	.	T	.	.	LowGQX	END=224927094	GT	./.
chr1	225083964	.	A	.	.	LowGQX	END=225083975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225083976	.	T	.	.	LowGQX	.	GT	./.
chr1	225083977	.	C	.	.	LowGQX	END=225083999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225084000	.	T	.	.	LowGQX	.	GT	./.
chr1	225084001	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225084002	.	T	.	.	LowGQX	.	GT	./.
chr1	225084003	.	C	.	.	LowGQX	END=225084067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225110979	.	T	.	.	LowGQX	END=225111022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225111023	.	C	.	.	LowGQX	END=225111078	GT	./.
chr1	225117218	.	C	.	.	LowGQX	END=225117537	GT	./.
chr1	225140391	.	G	.	.	LowGQX	END=225140490	GT	./.
chr1	225142659	.	A	.	.	LowGQX	END=225142838	GT	./.
chr1	225147853	.	A	.	.	LowGQX	END=225148006	GT	./.
chr1	225152179	.	A	.	.	LowGQX	END=225152313	GT	./.
chr1	225155131	.	A	.	.	LowGQX	END=225155287	GT	./.
chr1	225155350	.	T	.	.	LowGQX	END=225155449	GT	./.
chr1	225156460	.	G	.	.	LowGQX	END=225156619	GT	./.
chr1	225161774	.	G	.	.	LowGQX	END=225161873	GT	./.
chr1	225190444	.	T	.	.	LowGQX	END=225190629	GT	./.
chr1	225195114	.	G	.	.	LowGQX	END=225195246	GT	./.
chr1	225211316	.	G	.	.	LowGQX	END=225211571	GT	./.
chr1	225226345	.	T	.	.	LowGQX	END=225226525	GT	./.
chr1	225230536	.	G	.	.	LowGQX	END=225230816	GT	./.
chr1	225231365	.	G	.	.	LowGQX	END=225231518	GT	./.
chr1	225231527	.	G	.	.	LowGQX	END=225231686	GT	./.
chr1	225237911	.	G	.	.	LowGQX	END=225237999	GT	./.
chr1	225238000	.	C	.	.	LowGQX	END=225238100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225239152	.	G	.	.	LowGQX	END=225239497	GT	./.
chr1	225266898	.	G	.	.	LowGQX	END=225267145	GT	./.
chr1	225267146	.	A	.	.	LowGQX	END=225267169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225267170	.	A	.	.	LowGQX	.	GT	./.
chr1	225267171	.	C	.	.	LowGQX	END=225267173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225267174	.	C	.	.	LowGQX	.	GT	./.
chr1	225267175	.	T	.	.	LowGQX	END=225267179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225267180	.	C	.	.	LowGQX	.	GT	./.
chr1	225267181	.	T	.	.	LowGQX	END=225267193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225267194	.	A	.	.	LowGQX	.	GT	./.
chr1	225267195	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225267196	.	C	.	.	LowGQX	.	GT	./.
chr1	225267197	.	T	.	.	LowGQX	END=225267208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225267209	.	A	.	.	LowGQX	.	GT	./.
chr1	225267210	.	T	.	.	LowGQX	END=225267244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225267245	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	225267246	.	C	.	.	LowGQX	END=225267257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225268080	.	G	.	.	LowGQX	END=225268450	GT	./.
chr1	225270250	.	G	.	.	LowGQX	END=225270255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225270256	.	C	.	.	LowGQX	END=225270257	GT	./.
chr1	225270258	.	T	.	.	LowGQX	END=225270269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225270270	.	G	.	.	LowGQX	END=225270271	GT	./.
chr1	225270272	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225270273	.	A	.	.	LowGQX	.	GT	./.
chr1	225270274	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225270275	.	C	.	.	LowGQX	.	GT	./.
chr1	225270276	.	A	.	.	LowGQX	END=225270279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225270280	.	C	.	.	LowGQX	END=225270281	GT	./.
chr1	225270282	.	T	.	.	LowGQX	END=225270288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225270289	.	G	.	.	LowGQX	.	GT	./.
chr1	225270290	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225270291	.	G	.	.	LowGQX	.	GT	./.
chr1	225270292	.	G	.	.	LowGQX	END=225270295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225270296	.	C	.	.	LowGQX	.	GT	./.
chr1	225270297	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225270298	.	G	.	.	LowGQX	.	GT	./.
chr1	225270299	.	A	.	.	LowGQX	END=225270303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225270304	.	A	.	.	LowGQX	.	GT	./.
chr1	225270305	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225270306	.	A	.	.	LowGQX	.	GT	./.
chr1	225270307	.	C	.	.	LowGQX	END=225270308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225270309	.	A	.	.	LowGQX	END=225270449	GT	./.
chr1	225273245	.	G	.	.	LowGQX	END=225273491	GT	./.
chr1	225284819	.	G	.	.	LowGQX	END=225284941	GT	./.
chr1	225288414	.	G	.	.	LowGQX	END=225288603	GT	./.
chr1	225305385	.	G	.	.	LowGQX	END=225305490	GT	./.
chr1	225305582	.	G	.	.	LowGQX	END=225305867	GT	./.
chr1	225306909	.	A	.	.	LowGQX	END=225307008	GT	./.
chr1	225311223	.	T	.	.	LowGQX	END=225311322	GT	./.
chr1	225328432	.	G	.	.	LowGQX	END=225328542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225328543	.	T	.	.	LowGQX	.	GT	./.
chr1	225328544	.	C	.	.	LowGQX	END=225328567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225328568	.	A	.	.	LowGQX	END=225328723	GT	./.
chr1	225332098	.	G	.	.	LowGQX	END=225332330	GT	./.
chr1	225333005	.	A	.	.	LowGQX	END=225333104	GT	./.
chr1	225334805	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225334806	.	A	.	.	LowGQX	END=225334808	GT	./.
chr1	225334809	.	G	.	.	LowGQX	END=225334810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225334811	.	G	.	.	LowGQX	END=225334813	GT	./.
chr1	225334814	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225334815	.	A	.	.	LowGQX	.	GT	./.
chr1	225334816	.	A	.	.	LowGQX	END=225334822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225334823	.	C	.	.	LowGQX	.	GT	./.
chr1	225334824	.	T	.	.	LowGQX	END=225334826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225334827	.	G	.	.	LowGQX	.	GT	./.
chr1	225334828	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225334829	.	A	.	.	LowGQX	.	GT	./.
chr1	225334830	.	C	.	.	LowGQX	END=225334831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225334832	.	A	.	.	LowGQX	.	GT	./.
chr1	225334833	.	G	.	.	LowGQX	END=225334836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225334837	.	A	.	.	LowGQX	.	GT	./.
chr1	225334838	.	G	.	.	LowGQX	END=225334863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225334864	.	A	.	.	LowGQX	.	GT	./.
chr1	225334865	.	A	.	.	LowGQX	END=225334872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225334873	.	T	.	.	LowGQX	.	GT	./.
chr1	225334874	.	A	.	.	LowGQX	END=225334883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225334884	.	G	.	.	LowGQX	.	GT	./.
chr1	225334885	.	A	.	.	LowGQX	END=225334919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225334920	.	A	.	.	LowGQX	.	GT	./.
chr1	225334921	.	T	.	.	LowGQX	END=225334935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225334936	.	A	.	.	LowGQX	.	GT	./.
chr1	225334937	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225334938	.	A	.	.	LowGQX	END=225334939	GT	./.
chr1	225334940	.	C	.	.	LowGQX	END=225334957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225339575	.	T	.	.	LowGQX	END=225339614	GT	./.
chr1	225339615	.	G	.	.	LowGQX	END=225339729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	225339730	.	T	.	.	LowGQX	END=225339775	GT	./.
chr1	225340398	.	G	.	.	LowGQX	END=225340597	GT	./.
chr1	225341440	.	A	.	.	LowGQX	END=225341539	GT	./.
chr1	225346986	.	C	.	.	LowGQX	END=225347187	GT	./.
chr1	225355636	.	T	.	.	LowGQX	END=225355789	GT	./.
chr1	225372952	.	A	.	.	LowGQX	END=225373127	GT	./.
chr1	225380397	.	G	.	.	LowGQX	END=225380613	GT	./.
chr1	225391880	.	T	.	.	LowGQX	END=225391900	GT	./.
chr1	225391901	.	C	.	.	LowGQX	END=225391902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225391903	.	T	.	.	LowGQX	.	GT	./.
chr1	225391904	.	C	.	.	LowGQX	END=225391905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225391906	.	G	.	.	LowGQX	.	GT	./.
chr1	225391907	.	A	.	.	LowGQX	END=225391908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225391909	.	A	.	.	LowGQX	.	GT	./.
chr1	225391910	.	C	.	.	LowGQX	END=225391911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225391912	.	A	.	.	LowGQX	.	GT	./.
chr1	225391913	.	C	.	.	LowGQX	END=225391925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225391926	.	T	.	.	LowGQX	.	GT	./.
chr1	225391927	.	A	.	.	LowGQX	END=225391928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225391929	.	T	.	.	LowGQX	.	GT	./.
chr1	225391930	.	A	.	.	LowGQX	END=225391932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225391933	.	T	.	.	LowGQX	.	GT	./.
chr1	225391934	.	T	.	.	LowGQX	END=225391937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225391938	.	G	.	.	LowGQX	.	GT	./.
chr1	225391939	.	G	.	.	LowGQX	END=225391942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225391943	.	T	.	.	LowGQX	.	GT	./.
chr1	225391944	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225391945	.	G	.	.	LowGQX	.	GT	./.
chr1	225391946	.	A	.	.	LowGQX	END=225391951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225391952	.	T	.	.	LowGQX	END=225391953	GT	./.
chr1	225391954	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225391955	.	T	.	.	LowGQX	.	GT	./.
chr1	225391956	.	T	.	.	LowGQX	END=225391964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225391965	.	A	.	.	LowGQX	.	GT	./.
chr1	225391966	.	G	.	.	LowGQX	END=225391968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225391969	.	A	.	.	LowGQX	.	GT	./.
chr1	225391970	.	A	.	.	LowGQX	END=225391973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225391974	.	C	.	.	LowGQX	.	GT	./.
chr1	225391975	.	A	.	.	LowGQX	END=225392007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225392008	.	A	.	.	LowGQX	.	GT	./.
chr1	225392009	.	T	.	.	LowGQX	END=225392033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225393672	.	G	.	.	LowGQX	END=225393681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	225393682	.	G	T	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:33,0,30:60:5:0.500
chr1	225393683	.	G	.	.	LowGQX	END=225393701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225393702	.	G	.	.	LowGQX	.	GT	./.
chr1	225393703	.	G	.	.	LowGQX	END=225393709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225393710	.	G	.	.	LowGQX	.	GT	./.
chr1	225393711	.	G	.	.	LowGQX	END=225393722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225393723	.	G	.	.	LowGQX	.	GT	./.
chr1	225393724	.	T	.	.	LowGQX	END=225393764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225393765	.	T	.	.	LowGQX	.	GT	./.
chr1	225393766	.	G	.	.	LowGQX	END=225393873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225393874	.	T	.	.	LowGQX	.	GT	./.
chr1	225393875	.	C	.	.	LowGQX	END=225393880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225393881	.	G	.	.	LowGQX	.	GT	./.
chr1	225394669	.	G	.	.	LowGQX	END=225394744	GT	./.
chr1	225394745	.	G	.	.	LowGQX	END=225394787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225394788	.	A	.	.	LowGQX	.	GT	./.
chr1	225394789	.	C	.	.	LowGQX	END=225394895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225394896	.	T	.	.	LowGQX	END=225394910	GT	./.
chr1	225394911	.	G	.	.	LowGQX	END=225394922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225418764	.	T	.	.	LowGQX	END=225418863	GT	./.
chr1	225428294	.	G	.	.	LowGQX	END=225428524	GT	./.
chr1	225438334	.	A	.	.	LowGQX	END=225438433	GT	./.
chr1	225439952	.	A	.	.	LowGQX	END=225440119	GT	./.
chr1	225445631	.	A	.	.	LowGQX	END=225445820	GT	./.
chr1	225446782	.	T	.	.	LowGQX	END=225446955	GT	./.
chr1	225451881	.	T	.	.	LowGQX	END=225451892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225451893	.	T	.	.	LowGQX	.	GT	./.
chr1	225451894	.	T	.	.	LowGQX	END=225451980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225452883	.	G	.	.	LowGQX	END=225453082	GT	./.
chr1	225454342	.	G	.	.	LowGQX	END=225454511	GT	./.
chr1	225458436	.	G	.	.	LowGQX	END=225458568	GT	./.
chr1	225459607	.	G	.	.	LowGQX	END=225459796	GT	./.
chr1	225460656	.	G	.	.	LowGQX	END=225460827	GT	./.
chr1	225463616	.	A	.	.	LowGQX	END=225463783	GT	./.
chr1	225465109	.	T	.	.	LowGQX	END=225465208	GT	./.
chr1	225477586	.	G	.	.	LowGQX	END=225477784	GT	./.
chr1	225488540	.	T	.	.	LowGQX	END=225488541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225488542	.	T	.	.	LowGQX	END=225488732	GT	./.
chr1	225490857	.	G	.	.	LowGQX	END=225491049	GT	./.
chr1	225492609	.	G	.	.	LowGQX	END=225492808	GT	./.
chr1	225495112	.	T	.	.	LowGQX	END=225495271	GT	./.
chr1	225495936	.	G	.	.	LowGQX	END=225495971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225495972	.	T	.	.	LowGQX	END=225496112	GT	./.
chr1	225506282	.	C	.	.	LowGQX	END=225506381	GT	./.
chr1	225510365	.	G	.	.	LowGQX	END=225510525	GT	./.
chr1	225511923	.	G	.	.	LowGQX	END=225511926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225511927	.	T	.	.	LowGQX	.	GT	./.
chr1	225511928	.	T	.	.	LowGQX	END=225511978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225511979	.	T	.	.	LowGQX	.	GT	./.
chr1	225511980	.	T	.	.	LowGQX	END=225512039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225512040	.	C	.	.	LowGQX	END=225512055	GT	./.
chr1	225512437	.	A	.	.	LowGQX	END=225512536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225519138	.	G	.	.	LowGQX	END=225519189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225519190	.	G	T	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	225519191	.	A	.	.	LowGQX	END=225519262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225519263	.	T	.	.	LowGQX	.	GT	./.
chr1	225519264	.	C	.	.	LowGQX	END=225519297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225519298	.	T	.	.	LowGQX	END=225519327	GT	./.
chr1	225520992	.	G	.	.	LowGQX	END=225521208	GT	./.
chr1	225524967	.	G	.	.	LowGQX	END=225525198	GT	./.
chr1	225525762	.	G	.	.	LowGQX	END=225525884	GT	./.
chr1	225525926	.	T	.	.	LowGQX	END=225526025	GT	./.
chr1	225528158	.	G	.	.	LowGQX	END=225528198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225528199	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	225528200	.	C	.	.	LowGQX	END=225528252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225528253	.	T	.	.	LowGQX	END=225528403	GT	./.
chr1	225533663	.	G	.	.	LowGQX	END=225534082	GT	./.
chr1	225534147	.	T	.	.	LowGQX	END=225534356	GT	./.
chr1	225539348	.	G	.	.	LowGQX	END=225539475	GT	./.
chr1	225539476	.	A	.	.	LowGQX	END=225539482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225539483	.	T	.	.	LowGQX	END=225539484	GT	./.
chr1	225539485	.	G	.	.	LowGQX	END=225539491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225539492	.	T	.	.	LowGQX	.	GT	./.
chr1	225539493	.	T	.	.	LowGQX	END=225539542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225539543	.	G	.	.	LowGQX	.	GT	./.
chr1	225539544	.	A	.	.	LowGQX	END=225539551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225539552	.	T	.	.	LowGQX	.	GT	./.
chr1	225539553	.	C	.	.	LowGQX	END=225539570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225539571	.	A	.	.	LowGQX	.	GT	./.
chr1	225539572	.	A	.	.	LowGQX	END=225539585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225541444	.	G	.	.	LowGQX	END=225541597	GT	./.
chr1	225541876	.	A	.	.	LowGQX	END=225541877	GT	./.
chr1	225541878	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225541879	.	A	.	.	LowGQX	.	GT	./.
chr1	225541880	.	T	.	.	LowGQX	END=225541884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225541885	.	T	.	.	LowGQX	.	GT	./.
chr1	225541886	.	C	.	.	LowGQX	END=225541890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225541891	.	T	.	.	LowGQX	.	GT	./.
chr1	225541892	.	G	.	.	LowGQX	END=225541894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225541895	.	T	.	.	LowGQX	.	GT	./.
chr1	225541896	.	C	.	.	LowGQX	END=225541899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225541900	.	G	.	.	LowGQX	END=225541901	GT	./.
chr1	225541902	.	G	.	.	LowGQX	END=225541905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225541906	.	T	.	.	LowGQX	.	GT	./.
chr1	225541907	.	A	.	.	LowGQX	END=225541911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225541912	.	A	.	.	LowGQX	.	GT	./.
chr1	225541913	.	T	.	.	LowGQX	END=225541916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225541917	.	G	.	.	LowGQX	.	GT	./.
chr1	225541918	.	G	.	.	LowGQX	END=225541921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225541922	.	A	.	.	LowGQX	END=225541923	GT	./.
chr1	225541924	.	A	.	.	LowGQX	END=225541928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225541929	.	G	.	.	LowGQX	.	GT	./.
chr1	225541930	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225541931	.	T	.	.	LowGQX	.	GT	./.
chr1	225541932	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225541933	.	C	.	.	LowGQX	.	GT	./.
chr1	225541934	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225541935	.	G	.	.	LowGQX	.	GT	./.
chr1	225541936	.	T	.	.	LowGQX	END=225541938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225541939	.	G	.	.	LowGQX	END=225541975	GT	./.
chr1	225545470	.	G	.	.	LowGQX	END=225545572	GT	./.
chr1	225546197	.	G	.	.	LowGQX	END=225546386	GT	./.
chr1	225548382	.	G	.	.	LowGQX	END=225548440	GT	./.
chr1	225548441	.	T	.	.	LowGQX	END=225548518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225548519	.	A	.	.	LowGQX	.	GT	./.
chr1	225548520	.	C	.	.	LowGQX	END=225548593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225552493	.	G	.	.	LowGQX	END=225552596	GT	./.
chr1	225555506	.	G	.	.	LowGQX	END=225555734	GT	./.
chr1	225562389	.	G	.	.	LowGQX	END=225562579	GT	./.
chr1	225564957	.	G	.	.	LowGQX	END=225565036	GT	./.
chr1	225565037	.	C	.	.	LowGQX	END=225565072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	225565073	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	225565074	.	G	.	.	LowGQX	END=225565138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	225567860	.	G	.	.	LowGQX	END=225568024	GT	./.
chr1	225569074	.	T	.	.	LowGQX	END=225569281	GT	./.
chr1	225576080	.	G	.	.	LowGQX	END=225576193	GT	./.
chr1	225577435	.	G	.	.	LowGQX	END=225577575	GT	./.
chr1	225579992	.	G	.	.	LowGQX	END=225580003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225580004	.	G	.	.	LowGQX	.	GT	./.
chr1	225580005	.	C	.	.	LowGQX	END=225580011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225580012	.	T	.	.	LowGQX	.	GT	./.
chr1	225580013	.	C	.	.	LowGQX	END=225580019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225580020	.	A	.	.	LowGQX	.	GT	./.
chr1	225580021	.	T	.	.	LowGQX	END=225580031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225580032	.	G	.	.	LowGQX	.	GT	./.
chr1	225580033	.	A	.	.	LowGQX	END=225580042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225580043	.	G	.	.	LowGQX	.	GT	./.
chr1	225580044	.	T	.	.	LowGQX	END=225580084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225580085	.	A	.	.	LowGQX	END=225580153	GT	./.
chr1	225586221	.	G	.	.	LowGQX	END=225586368	GT	./.
chr1	225586755	.	G	.	.	LowGQX	.	GT	./.
chr1	225586756	.	A	.	.	LowGQX	END=225586759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225586760	.	C	.	.	LowGQX	.	GT	./.
chr1	225586761	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225586762	.	A	.	.	LowGQX	.	GT	./.
chr1	225586763	.	C	.	.	LowGQX	END=225586767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225586768	.	A	.	.	LowGQX	END=225586770	GT	./.
chr1	225586771	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225586772	.	C	.	.	LowGQX	.	GT	./.
chr1	225586773	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225586774	.	A	.	.	LowGQX	.	GT	./.
chr1	225586775	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225586776	.	T	.	.	LowGQX	END=225586777	GT	./.
chr1	225586778	.	C	.	.	LowGQX	END=225586788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	225586789	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	225586790	.	C	.	.	LowGQX	END=225586812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	225586813	.	G	.	.	LowGQX	.	GT	./.
chr1	225586814	.	A	.	.	LowGQX	END=225586820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	225586821	.	A	.	.	LowGQX	.	GT	./.
chr1	225586822	.	G	.	.	LowGQX	END=225586861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225586862	.	C	.	10.70	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.05:60:0
chr1	225586863	.	C	.	.	LowGQX	END=225586971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225590954	.	C	.	.	PASS	END=225590960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	225590961	.	C	.	.	PASS	END=225590963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	225590964	.	C	.	.	PASS	END=225590974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	225590975	.	G	.	.	PASS	END=225590986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	225590987	.	A	.	.	PASS	END=225591001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	225591002	.	G	.	.	PASS	END=225591018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	225591019	.	G	.	.	PASS	END=225591026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	225591027	.	C	.	.	PASS	END=225591034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	225591035	.	C	.	.	PASS	END=225591047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	225591048	.	T	.	.	PASS	END=225591082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	225591083	.	G	.	.	PASS	END=225591184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	225591185	.	A	.	.	PASS	END=225591196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	225591197	.	A	.	.	PASS	END=225591216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	225592055	.	A	.	.	PASS	END=225592079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	225592080	.	A	.	.	PASS	END=225592099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	225592100	.	G	.	.	PASS	END=225592121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:96:60
chr1	225592122	.	C	.	.	PASS	END=225592150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	225592151	.	A	.	.	PASS	END=225592240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	225592241	.	A	.	.	PASS	END=225592272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	225592273	.	A	.	.	PASS	END=225592316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	225592317	.	T	.	.	PASS	END=225592454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	225592455	.	T	.	.	PASS	END=225592459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	225594312	.	A	.	.	PASS	END=225594347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	225594348	.	A	.	.	PASS	END=225594394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	225594395	.	G	.	.	PASS	END=225594470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	225594471	.	C	.	.	PASS	END=225594543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	225594544	.	T	.	.	PASS	END=225594556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	225594557	.	A	.	.	PASS	END=225594584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	225594585	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:79:99:60
chr1	225597942	.	A	.	.	PASS	END=225597965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	225597966	.	A	.	.	PASS	END=225598007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	225598008	.	A	.	.	PASS	END=225598125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	225598126	.	A	.	.	PASS	END=225598145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	225598146	.	C	.	.	PASS	END=225598165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	225598166	.	A	.	.	PASS	END=225598169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	225598988	.	G	.	.	PASS	END=225599049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:92:60
chr1	225599050	.	A	.	.	PASS	END=225599140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	225599141	.	T	.	.	PASS	END=225599190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:94:60
chr1	225599191	.	G	.	.	PASS	END=225599193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	225600105	.	C	.	.	PASS	END=225600111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	225600112	.	G	.	.	PASS	END=225600122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	225600123	.	C	.	.	PASS	END=225600135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	225600136	.	T	.	.	PASS	END=225600137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	225600138	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:42:60
chr1	225600139	.	A	.	.	PASS	END=225600150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	225600151	.	C	.	.	PASS	END=225600154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	225600155	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:75:60
chr1	225600156	.	C	.	.	PASS	END=225600178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	225600179	.	T	.	.	PASS	END=225600201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	225600202	.	C	.	.	PASS	END=225600227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	225600228	.	C	.	.	PASS	END=225600290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	225600291	.	C	.	.	PASS	END=225600326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:61
chr1	225600327	.	T	.	.	PASS	END=225600342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:93:61
chr1	225600343	.	G	.	114.26	PASS	DP=61;MQ=61;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:48:61:84.27:61:84
chr1	225600344	.	A	.	.	PASS	END=225600348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:81:61
chr1	225600349	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:69:61
chr1	225600350	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:99:61
chr1	225600351	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:71:61
chr1	225600351	.	T	TA	48.71	LowQD	BaseQRankSum=1.442;DP=61;FS=0.000;HRun=16;HaplotypeScore=295.4036;MQ=61;MQ0=0;MQRankSum=0.713;QD=0.80;ReadPosRankSum=-1.210;SB=-28.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:43,12:61:87.74:88,0,394:61:49:0.218
chr1	225600352	.	A	.	.	PASS	END=225600367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:93:61
chr1	225600368	.	G	.	.	PASS	END=225600398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	225601575	.	C	.	.	LowGQX	END=225601684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225601685	.	A	.	.	LowGQX	END=225601923	GT	./.
chr1	225602929	.	G	.	.	PASS	END=225602944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	225602945	.	A	.	.	PASS	END=225602963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	225602964	.	A	.	.	PASS	END=225603033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	225603034	.	C	.	.	PASS	END=225603085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	225605635	.	T	.	.	PASS	END=225605643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	225605644	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:51:60
chr1	225605645	.	C	.	.	PASS	END=225605647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	225605648	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:27:60
chr1	225605649	.	A	.	.	PASS	END=225605672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	225605673	.	A	.	.	PASS	END=225605727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	225605728	.	C	.	.	PASS	END=225605766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	225605767	.	C	.	.	PASS	END=225605823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	225605824	.	A	.	.	PASS	END=225605867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	225605868	.	T	.	.	PASS	END=225605876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	225605877	.	A	.	.	PASS	END=225605879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	225605880	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:39:60
chr1	225605881	.	A	.	.	PASS	END=225605900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	225605901	.	C	.	.	PASS	END=225605911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	225605912	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:15:60
chr1	225605913	.	A	.	.	PASS	END=225605916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	225605917	.	T	.	.	PASS	END=225605930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	225605931	.	T	.	.	PASS	END=225605933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	225606914	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:87:60
chr1	225606915	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:63:60
chr1	225606916	.	C	.	.	PASS	END=225606925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	225606926	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:72:60
chr1	225606927	.	C	.	.	PASS	END=225606939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	225606940	.	C	.	.	PASS	END=225606956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	225606957	.	A	.	.	PASS	END=225606961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	225606962	.	T	.	.	PASS	END=225606974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	225606975	.	T	.	.	PASS	END=225607110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	225607111	.	T	.	.	PASS	END=225607120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	225607121	.	T	.	.	PASS	END=225607143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	225607144	.	C	T	2261.31	PASS	DP=74;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=6.7843;MQ=60;MQ0=0;QD=30.56;SB=-1057.52	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,74:74:99:2294,175,0:60:99:1.000
chr1	225607145	.	T	.	.	PASS	END=225607205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	225607366	.	C	.	.	PASS	END=225607431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	225607432	.	A	.	.	PASS	END=225607492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	225607493	.	A	.	.	PASS	END=225607544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	225607545	.	A	.	.	PASS	END=225607551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	225609728	.	T	.	.	PASS	END=225609745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	225609746	.	G	.	.	PASS	END=225609756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	225609757	.	G	.	.	PASS	END=225609762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:90:60
chr1	225609763	.	G	A	454.04	PASS	BaseQRankSum=1.091;DP=36;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=1.9788;MQ=60;MQ0=0;MQRankSum=0.032;QD=12.61;ReadPosRankSum=1.989;SB=-27.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:21,15:36:99:484,0,606:60:99:0.417
chr1	225609764	.	G	.	.	PASS	END=225609777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	225609778	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:69:60
chr1	225609779	.	C	.	.	PASS	END=225609821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	225609822	.	T	.	.	PASS	END=225609864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	225609865	.	C	.	.	PASS	END=225609883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	225609884	.	A	G	2054.05	PASS	DP=82;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=6.6812;MQ=60;MQ0=0;QD=25.05;SB=-791.88	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,82:82:99:2087,165,0:60:99:1.000
chr1	225609885	.	G	.	.	PASS	END=225609961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	225609962	.	C	.	.	PASS	END=225610013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	225610014	.	C	.	.	PASS	END=225610030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	225611562	.	T	.	.	PASS	END=225611571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	225611572	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:60
chr1	225611573	.	T	.	.	PASS	END=225611595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	225611596	.	A	.	.	PASS	END=225611616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	225611617	.	A	.	.	PASS	END=225611659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:97:60
chr1	225611660	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:78:99:60
chr1	225611661	.	C	T	1096.77	PASS	BaseQRankSum=1.524;DP=76;Dels=0.00;FS=5.129;HRun=2;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=0.645;QD=14.43;ReadPosRankSum=1.068;SB=-314.38	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,40:76:99:1127,0,880:60:99:0.541
chr1	225611662	.	A	.	.	PASS	END=225611762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	225611763	.	T	.	.	PASS	END=225611807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	225611808	.	A	.	.	PASS	END=225611818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	225685446	.	T	.	.	LowGQX	END=225685545	GT	./.
chr1	225685977	.	T	.	.	LowGQX	END=225686127	GT	./.
chr1	225688684	.	G	.	.	LowGQX	END=225688749	GT	./.
chr1	225688750	.	G	.	.	LowGQX	END=225688783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225692675	.	G	.	.	LowGQX	END=225692774	GT	./.
chr1	225695581	.	T	.	.	LowGQX	END=225695736	GT	./.
chr1	225699488	.	G	.	.	LowGQX	END=225699587	GT	./.
chr1	225700338	.	A	.	.	LowGQX	END=225700437	GT	./.
chr1	225700571	.	A	.	.	LowGQX	END=225700720	GT	./.
chr1	225702226	.	C	.	.	LowGQX	END=225702488	GT	./.
chr1	225702489	.	G	.	.	LowGQX	END=225702496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225702497	.	G	.	.	LowGQX	.	GT	./.
chr1	225702498	.	G	.	.	LowGQX	END=225702503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225702504	.	G	.	.	LowGQX	.	GT	./.
chr1	225702505	.	A	.	.	LowGQX	END=225702508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225702509	.	G	.	.	LowGQX	END=225702511	GT	./.
chr1	225702512	.	C	.	.	LowGQX	END=225702526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225702527	.	A	.	.	LowGQX	END=225702528	GT	./.
chr1	225702529	.	G	.	.	LowGQX	END=225702530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225702531	.	C	.	.	LowGQX	.	GT	./.
chr1	225702532	.	T	.	.	LowGQX	END=225702533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225702534	.	C	.	.	LowGQX	.	GT	./.
chr1	225702535	.	T	.	.	LowGQX	END=225702547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225702548	.	G	.	.	LowGQX	.	GT	./.
chr1	225702549	.	G	.	.	LowGQX	END=225702556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225702557	.	G	.	.	LowGQX	.	GT	./.
chr1	225702558	.	G	.	.	LowGQX	END=225702564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225702565	.	T	.	.	LowGQX	END=225702566	GT	./.
chr1	225702567	.	G	.	.	LowGQX	END=225702570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225702571	.	A	.	.	LowGQX	END=225702572	GT	./.
chr1	225702573	.	G	.	.	LowGQX	END=225702576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225702577	.	A	.	.	LowGQX	.	GT	./.
chr1	225702578	.	G	.	.	LowGQX	END=225702582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225702583	.	A	.	.	LowGQX	END=225702584	GT	./.
chr1	225702585	.	G	.	.	LowGQX	END=225702586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225702587	.	G	.	.	LowGQX	.	GT	./.
chr1	225702588	.	G	.	.	LowGQX	END=225702589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	225702590	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	225702591	.	C	.	.	LowGQX	END=225702632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	225702633	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	225702634	.	A	.	.	LowGQX	END=225702641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225702642	.	A	.	.	LowGQX	.	GT	./.
chr1	225702643	.	G	.	.	LowGQX	END=225702647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225702648	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	225702649	.	T	.	.	LowGQX	END=225702665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	225704896	.	A	.	.	LowGQX	END=225705088	GT	./.
chr1	225705089	.	G	.	.	LowGQX	END=225705114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225705115	.	G	.	.	LowGQX	.	GT	./.
chr1	225705116	.	G	.	.	LowGQX	END=225705128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225705129	.	G	.	.	LowGQX	.	GT	./.
chr1	225705130	.	C	.	.	LowGQX	END=225705167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225705168	.	G	.	.	LowGQX	.	GT	./.
chr1	225705169	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225705170	.	G	.	.	LowGQX	.	GT	./.
chr1	225705171	.	A	.	.	LowGQX	END=225705280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225705281	.	G	.	.	LowGQX	.	GT	./.
chr1	225705282	.	C	.	.	LowGQX	END=225705287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225705288	.	C	.	.	LowGQX	.	GT	./.
chr1	225705289	.	T	.	.	LowGQX	END=225705296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225705297	.	T	.	.	LowGQX	.	GT	./.
chr1	225705298	.	G	.	.	LowGQX	END=225705325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225705326	.	A	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	225705327	.	G	.	.	LowGQX	END=225705692	GT	./.
chr1	225706898	.	A	.	.	LowGQX	END=225707269	GT	./.
chr1	225718249	.	A	.	.	LowGQX	END=225718348	GT	./.
chr1	225723187	.	A	.	.	LowGQX	END=225723286	GT	./.
chr1	225742606	.	A	.	.	LowGQX	END=225742787	GT	./.
chr1	225754929	.	A	.	.	LowGQX	END=225755118	GT	./.
chr1	225840281	.	G	.	.	LowGQX	END=225840440	GT	./.
chr1	225965629	.	C	.	.	LowGQX	END=225965728	GT	./.
chr1	225970987	.	G	.	.	LowGQX	END=225971086	GT	./.
chr1	225974512	.	T	.	.	LowGQX	END=225974547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225974548	.	T	.	.	LowGQX	.	GT	./.
chr1	225974549	.	T	.	.	LowGQX	END=225974566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	225974567	.	C	.	.	LowGQX	.	GT	./.
chr1	225974568	.	A	.	.	LowGQX	END=225974577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	225974578	.	T	.	.	LowGQX	.	GT	./.
chr1	225974579	.	C	.	.	LowGQX	END=225974619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	225974620	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	225974621	.	T	.	.	LowGQX	END=225974671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225976716	.	A	.	.	LowGQX	END=225976772	GT	./.
chr1	225976773	.	T	.	.	LowGQX	END=225976780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225976781	.	G	.	.	LowGQX	.	GT	./.
chr1	225976782	.	G	.	.	LowGQX	END=225976814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	225976815	.	A	.	.	LowGQX	.	GT	./.
chr1	225976940	.	A	.	.	LowGQX	END=225977063	GT	./.
chr1	226016380	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:83:99:60
chr1	226016381	.	G	A	938.63	PASS	BaseQRankSum=-1.323;DP=82;Dels=0.00;FS=1.232;HRun=0;HaplotypeScore=21.9019;MQ=60;MQ0=0;MQRankSum=-0.727;QD=11.45;ReadPosRankSum=0.718;SB=-226.36	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:37,45:82:99:969,0,994:60:99:0.549
chr1	226016382	.	G	.	.	PASS	END=226016396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	226016397	.	G	A	1172.42	PASS	BaseQRankSum=1.581;DP=97;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.4685;MQ=60;MQ0=0;MQRankSum=-0.690;QD=12.09;ReadPosRankSum=0.843;SB=-428.26	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:41,56:97:99:1202,0,961:60:99:0.577
chr1	226016398	.	T	.	.	PASS	END=226016452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	226016453	.	C	.	.	PASS	END=226016555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	226016556	.	C	.	.	PASS	END=226016586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	226016587	.	G	.	.	PASS	END=226016608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	226016609	.	T	.	.	PASS	END=226016629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	226016630	.	C	.	.	PASS	END=226016644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:98:60
chr1	226016645	.	A	.	.	PASS	END=226016655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr1	226016656	.	T	.	.	PASS	END=226016658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	226016659	.	T	.	.	PASS	END=226016662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	226016663	.	T	.	.	PASS	END=226016664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	226019429	.	T	.	.	PASS	END=226019432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	226019433	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:9:60
chr1	226019434	.	T	.	.	PASS	END=226019437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr1	226019438	.	C	.	.	PASS	END=226019447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:69:60
chr1	226019448	.	C	.	.	PASS	END=226019473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	226019474	.	C	.	.	PASS	END=226019498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	226019499	.	A	.	.	PASS	END=226019541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	226019542	.	C	.	.	PASS	END=226019561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	226019562	.	A	.	.	PASS	END=226019636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	226019637	.	C	.	.	PASS	END=226019652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	226019653	.	G	A	1142.31	PASS	BaseQRankSum=2.448;DP=91;Dels=0.00;FS=1.800;HRun=2;HaplotypeScore=7.6808;MQ=60;MQ0=0;MQRankSum=0.291;QD=12.55;ReadPosRankSum=0.517;SB=-558.10	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:47,43:91:99:1172,0,1127:60:99:0.478
chr1	226019654	.	A	.	.	PASS	END=226019696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	226019697	.	G	.	.	PASS	END=226019709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	226019710	.	C	.	.	PASS	END=226019711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	226026304	.	C	.	.	PASS	END=226026315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	226026316	.	T	.	.	PASS	END=226026328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	226026329	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:69:41:60
chr1	226026330	.	C	.	.	PASS	END=226026354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	226026355	.	G	.	.	PASS	END=226026396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	226026397	.	C	.	.	PASS	END=226026416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	226026417	.	C	.	.	PASS	END=226026440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	226026441	.	C	.	.	PASS	END=226026552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	226026553	.	A	.	.	PASS	END=226026579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	226026580	.	A	.	.	PASS	END=226026609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	226026610	.	T	.	.	PASS	END=226026615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	226026616	.	G	A	2720.27	PASS	DP=92;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.3630;MQ=60;MQ0=0;QD=29.57;SB=-641.19	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,90:92:99:2753,211,0:60:99:1.000
chr1	226026617	.	T	.	.	PASS	END=226026633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	226026867	.	A	.	.	PASS	END=226026884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	226026885	.	C	.	.	PASS	END=226026916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	226026917	.	G	.	.	PASS	END=226026929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	226026930	.	T	.	.	PASS	END=226027033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	226027034	.	C	.	.	PASS	END=226027060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	226027061	.	T	.	.	PASS	END=226027067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	226027068	.	G	.	.	PASS	END=226027076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:59
chr1	226027077	.	T	.	.	PASS	END=226027082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:59
chr1	226027083	.	T	.	.	PASS	END=226027092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:59
chr1	226027093	.	T	.	.	PASS	END=226027094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:59
chr1	226027095	.	T	.	.	PASS	END=226027098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:59
chr1	226027479	.	C	.	.	PASS	END=226027487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	226027488	.	A	.	.	PASS	END=226027499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	226027500	.	C	.	.	PASS	END=226027521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	226027522	.	G	.	.	PASS	END=226027555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	226027556	.	T	.	.	PASS	END=226027581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	226027582	.	A	.	.	PASS	END=226027680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr1	226027681	.	A	.	.	PASS	END=226027709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	226027710	.	C	.	.	PASS	END=226027726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	226027727	.	C	.	.	PASS	END=226027743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	226027744	.	T	.	.	PASS	END=226027756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	226027757	.	C	.	.	PASS	END=226027789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	226030016	.	C	.	.	PASS	END=226030036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	226030037	.	G	.	.	PASS	END=226030055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	226030056	.	C	.	.	PASS	END=226030066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	226030067	.	G	.	.	PASS	END=226030105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	226030106	.	A	.	.	PASS	END=226030180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	226030181	.	G	.	.	PASS	END=226030203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	226030204	.	T	.	.	PASS	END=226030216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:94:60
chr1	226030217	.	A	.	.	PASS	END=226030226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	226032148	.	A	.	.	PASS	END=226032165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	226032166	.	C	.	.	PASS	END=226032169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	226032170	.	G	.	.	PASS	END=226032202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	226032203	.	T	.	.	PASS	END=226032283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:96:60
chr1	226032284	.	G	.	.	PASS	END=226032318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:91:60
chr1	226032319	.	T	.	.	PASS	END=226032347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	226032348	.	A	.	.	PASS	END=226032373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	226032374	.	G	.	.	PASS	END=226032375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	226032796	.	G	.	.	PASS	END=226032816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	226032817	.	T	.	.	PASS	END=226032872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	226032873	.	T	.	.	PASS	END=226032904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	226032905	.	C	.	.	PASS	END=226032943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	226032944	.	T	.	.	PASS	END=226032967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	226032968	.	G	.	.	PASS	END=226033012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	226033013	.	A	.	.	PASS	END=226033045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	226033046	.	T	.	.	PASS	END=226033054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	226033055	.	C	.	.	PASS	END=226033062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	226033063	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:39:60
chr1	226033064	.	C	.	.	PASS	END=226033087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	226033088	.	T	.	.	PASS	END=226033094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	226033095	.	C	.	.	PASS	END=226033099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	226034739	.	C	.	.	LowGQX	END=226034916	GT	./.
chr1	226036175	.	C	.	.	LowGQX	END=226036274	GT	./.
chr1	226036596	.	A	.	.	LowGQX	END=226036600	GT	./.
chr1	226036601	.	G	.	.	LowGQX	END=226036602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226036603	.	A	.	.	LowGQX	.	GT	./.
chr1	226036604	.	G	.	.	LowGQX	END=226036606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226036607	.	C	.	.	LowGQX	.	GT	./.
chr1	226036608	.	A	.	.	LowGQX	END=226036611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226036612	.	G	.	.	LowGQX	.	GT	./.
chr1	226036613	.	G	.	.	LowGQX	END=226036615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226036616	.	G	.	.	LowGQX	END=226036617	GT	./.
chr1	226036618	.	G	.	.	LowGQX	END=226036621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226036622	.	C	.	.	LowGQX	END=226036624	GT	./.
chr1	226036625	.	G	.	.	LowGQX	END=226036628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226036629	.	C	.	.	LowGQX	.	GT	./.
chr1	226036630	.	A	.	.	LowGQX	END=226036631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226036632	.	C	.	.	LowGQX	.	GT	./.
chr1	226036633	.	C	.	.	LowGQX	END=226036634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226036635	.	A	.	.	LowGQX	END=226036636	GT	./.
chr1	226036637	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226036638	.	C	.	.	LowGQX	END=226036639	GT	./.
chr1	226036640	.	G	.	.	LowGQX	END=226036641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226036642	.	T	.	.	LowGQX	.	GT	./.
chr1	226036643	.	G	.	.	LowGQX	END=226036645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226036646	.	A	.	.	LowGQX	.	GT	./.
chr1	226036647	.	G	.	.	LowGQX	END=226036648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226036649	.	C	.	.	LowGQX	END=226036650	GT	./.
chr1	226036651	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226036652	.	G	.	.	LowGQX	.	GT	./.
chr1	226036653	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226036654	.	A	.	.	LowGQX	.	GT	./.
chr1	226036655	.	G	.	.	LowGQX	END=226036656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226036657	.	C	.	.	LowGQX	END=226036715	GT	./.
chr1	226037611	.	A	.	.	LowGQX	END=226037782	GT	./.
chr1	226040363	.	A	.	.	LowGQX	END=226040472	GT	./.
chr1	226041328	.	A	.	.	LowGQX	END=226041494	GT	./.
chr1	226043561	.	C	.	.	LowGQX	END=226043660	GT	./.
chr1	226044291	.	G	.	.	LowGQX	END=226044359	GT	./.
chr1	226044360	.	G	.	.	LowGQX	END=226044393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226044394	.	C	.	.	LowGQX	.	GT	./.
chr1	226044395	.	A	.	.	LowGQX	END=226044446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226044559	.	G	.	.	LowGQX	END=226044719	GT	./.
chr1	226046873	.	G	.	.	LowGQX	END=226046916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226046917	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	226046918	.	G	.	.	LowGQX	END=226046954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226046955	.	A	.	.	LowGQX	END=226047018	GT	./.
chr1	226047019	.	C	.	.	LowGQX	END=226047020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226047021	.	A	.	.	LowGQX	END=226047023	GT	./.
chr1	226047024	.	G	.	.	LowGQX	END=226047025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226047026	.	A	.	.	LowGQX	END=226047027	GT	./.
chr1	226047028	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226047029	.	C	.	.	LowGQX	END=226047033	GT	./.
chr1	226047034	.	G	.	.	LowGQX	END=226047035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226047036	.	T	.	.	LowGQX	.	GT	./.
chr1	226047037	.	A	.	.	LowGQX	END=226047039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226047040	.	G	.	.	LowGQX	.	GT	./.
chr1	226047041	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226047042	.	G	.	.	LowGQX	END=226047043	GT	./.
chr1	226047044	.	T	.	.	LowGQX	END=226047045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226047046	.	C	.	.	LowGQX	END=226047050	GT	./.
chr1	226047051	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226048555	.	C	.	.	LowGQX	END=226048562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226048563	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	226048564	.	A	.	.	LowGQX	END=226048567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226048568	.	G	.	.	LowGQX	.	GT	./.
chr1	226048569	.	T	.	.	LowGQX	END=226048570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226048571	.	C	.	.	LowGQX	.	GT	./.
chr1	226048572	.	T	.	.	LowGQX	END=226048575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226048576	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	226048577	.	G	.	.	LowGQX	END=226048578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226048579	.	C	.	.	LowGQX	.	GT	./.
chr1	226048580	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226048581	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	226048582	.	C	.	.	LowGQX	END=226048588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226048589	.	G	.	.	LowGQX	END=226048590	GT	./.
chr1	226048591	.	T	.	.	LowGQX	END=226048603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226048604	.	G	.	.	LowGQX	.	GT	./.
chr1	226048605	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226048606	.	A	.	.	LowGQX	.	GT	./.
chr1	226048607	.	G	.	.	LowGQX	END=226048613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226048614	.	A	.	.	LowGQX	END=226048646	GT	./.
chr1	226048647	.	C	.	.	LowGQX	END=226048699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226049916	.	A	.	.	LowGQX	END=226050053	GT	./.
chr1	226050153	.	A	.	.	LowGQX	END=226050280	GT	./.
chr1	226050462	.	A	.	.	LowGQX	END=226050561	GT	./.
chr1	226053583	.	C	.	.	LowGQX	END=226053682	GT	./.
chr1	226054265	.	C	.	.	LowGQX	END=226054267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226054268	.	A	.	.	LowGQX	.	GT	./.
chr1	226054269	.	C	.	.	LowGQX	END=226054273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226054274	.	C	.	.	LowGQX	.	GT	./.
chr1	226054275	.	A	.	.	LowGQX	END=226054279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226054280	.	C	.	.	LowGQX	.	GT	./.
chr1	226054281	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226054282	.	C	.	.	LowGQX	.	GT	./.
chr1	226054283	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226054284	.	T	.	.	LowGQX	END=226054287	GT	./.
chr1	226054288	.	T	.	.	LowGQX	END=226054292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226054293	.	T	.	.	LowGQX	END=226054294	GT	./.
chr1	226054295	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226054296	.	A	.	.	LowGQX	.	GT	./.
chr1	226054297	.	T	.	.	LowGQX	END=226054300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226054301	.	C	.	.	LowGQX	END=226054304	GT	./.
chr1	226054305	.	G	.	.	LowGQX	END=226054309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226054310	.	G	.	.	LowGQX	END=226054312	GT	./.
chr1	226054313	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226054314	.	C	.	.	LowGQX	.	GT	./.
chr1	226054315	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226054316	.	C	.	.	LowGQX	.	GT	./.
chr1	226054317	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226054318	.	T	.	.	LowGQX	.	GT	./.
chr1	226054319	.	G	.	.	LowGQX	END=226054320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226054321	.	A	.	.	LowGQX	.	GT	./.
chr1	226054322	.	A	.	.	LowGQX	END=226054323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226054324	.	C	.	.	LowGQX	.	GT	./.
chr1	226054325	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226054326	.	A	.	.	LowGQX	.	GT	./.
chr1	226054327	.	C	.	.	LowGQX	END=226054331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226054332	.	A	.	.	LowGQX	.	GT	./.
chr1	226054333	.	G	.	.	LowGQX	END=226054334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226054335	.	A	.	.	LowGQX	.	GT	./.
chr1	226054336	.	A	.	.	LowGQX	END=226054337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226054338	.	A	.	.	LowGQX	.	GT	./.
chr1	226054339	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226054340	.	G	.	.	LowGQX	END=226054384	GT	./.
chr1	226054788	.	T	.	.	LowGQX	END=226054887	GT	./.
chr1	226055586	.	A	.	.	LowGQX	END=226055732	GT	./.
chr1	226058745	.	C	.	.	LowGQX	END=226058798	GT	./.
chr1	226058799	.	C	.	.	LowGQX	END=226058812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226058813	.	C	.	.	LowGQX	.	GT	./.
chr1	226058814	.	C	.	.	LowGQX	END=226058824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226058825	.	G	.	.	LowGQX	END=226058826	GT	./.
chr1	226058827	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226058828	.	A	.	.	LowGQX	.	GT	./.
chr1	226058829	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226058830	.	C	.	32.74	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:2.88:60:3
chr1	226058831	.	A	.	.	LowGQX	END=226058832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226058833	.	G	.	.	LowGQX	.	GT	./.
chr1	226058834	.	G	.	.	LowGQX	END=226058838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226058839	.	G	.	.	LowGQX	.	GT	./.
chr1	226058840	.	C	.	.	LowGQX	END=226058844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226059671	.	G	.	.	LowGQX	END=226059726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226059727	.	G	.	.	LowGQX	.	GT	./.
chr1	226059728	.	A	.	.	LowGQX	END=226059745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226059746	.	T	.	.	LowGQX	END=226059747	GT	./.
chr1	226059748	.	G	.	.	LowGQX	END=226059770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226061978	.	A	.	.	LowGQX	END=226062077	GT	./.
chr1	226065093	.	A	.	.	LowGQX	END=226065146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226065147	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	226065148	.	C	.	.	LowGQX	END=226065264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226065265	.	A	.	.	LowGQX	END=226065282	GT	./.
chr1	226074425	.	G	.	.	PASS	END=226074442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:58
chr1	226074443	.	C	.	.	PASS	END=226074459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:58
chr1	226074460	.	A	.	.	PASS	END=226074562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:58
chr1	226074563	.	T	G	2556.86	PASS	BaseQRankSum=0.949;DP=272;Dels=0.00;FS=2.259;HRun=1;HaplotypeScore=28.5131;MQ=59;MQ0=2;MQRankSum=-1.046;QD=9.40;ReadPosRankSum=-3.101;SB=-1131.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:157,115:272:99:2587,0,3827:59:99:0.423
chr1	226074564	.	C	.	.	PASS	END=226074600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:59
chr1	226074601	.	C	.	.	PASS	END=226074772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:59
chr1	226074773	.	T	.	.	PASS	END=226074791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:59
chr1	226074792	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:124:99:59
chr1	226075097	.	A	.	.	PASS	END=226075118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:53
chr1	226075119	.	G	.	.	PASS	END=226075164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:45
chr1	226075165	.	T	.	.	PASS	END=226075214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:41
chr1	226075215	.	A	.	.	PASS	END=226075277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:40
chr1	226075278	.	G	.	.	PASS	END=226075333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:44
chr1	226075334	.	C	.	.	PASS	END=226075340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:54
chr1	226075458	.	C	.	.	PASS	END=226075494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:57
chr1	226075495	.	A	.	.	PASS	END=226075539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:54
chr1	226075540	.	T	.	.	PASS	END=226075568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:51
chr1	226075569	.	C	.	.	PASS	END=226075607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:46
chr1	226075608	.	G	A	2872.11	PASS	BaseQRankSum=0.038;DP=243;Dels=0.00;FS=10.796;HRun=1;HaplotypeScore=20.1183;MQ=46;MQ0=9;MQRankSum=-4.488;QD=11.82;ReadPosRankSum=-0.246;SB=-1480.20	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:111,130:243:99:2902,0,2877:46:99:0.539
chr1	226075609	.	A	.	.	PASS	END=226075732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:46
chr1	226075733	.	C	.	.	PASS	END=226075734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:55
chr1	226076500	.	G	.	.	PASS	END=226076528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	226076529	.	G	.	.	PASS	END=226076555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	226076556	.	C	.	.	PASS	END=226076590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	226076591	.	G	.	.	PASS	END=226076694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	226076695	.	C	.	.	PASS	END=226076717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	226076718	.	T	.	.	PASS	END=226076746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	226076747	.	C	.	.	PASS	END=226076768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	226108153	.	C	.	.	LowGQX	END=226108371	GT	./.
chr1	226108906	.	A	.	.	LowGQX	END=226108917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226108918	.	T	.	.	LowGQX	END=226109066	GT	./.
chr1	226109067	.	G	.	.	LowGQX	END=226109069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226109070	.	C	.	.	LowGQX	.	GT	./.
chr1	226109071	.	C	.	.	LowGQX	END=226109073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226109249	.	G	.	.	LowGQX	END=226109316	GT	./.
chr1	226109317	.	C	.	.	LowGQX	END=226109326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226109327	.	G	.	.	LowGQX	END=226109348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	226109556	.	A	.	.	PASS	END=226109580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:75:60
chr1	226109581	.	G	.	.	PASS	END=226109582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	226109583	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:55:60
chr1	226109584	.	C	.	.	PASS	END=226109589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:90:60
chr1	226109590	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:58:60
chr1	226109591	.	G	.	.	PASS	END=226109620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr1	226109621	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:66:60
chr1	226109622	.	C	.	.	PASS	END=226109664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	226109665	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:60:60
chr1	226109666	.	C	.	.	PASS	END=226109672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	226109673	.	A	.	.	PASS	END=226109681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	226109682	.	G	.	.	PASS	END=226109698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	226109699	.	T	.	.	PASS	END=226109706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	226109707	.	C	.	.	PASS	END=226109710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	226109711	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:36:60
chr1	226109712	.	T	.	.	PASS	END=226109725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	226109726	.	T	.	.	PASS	END=226109729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	226109730	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	226109731	.	T	.	.	PASS	END=226109758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	226109759	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	226109760	.	G	.	.	PASS	END=226109761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	226109762	.	C	.	.	LowGQX	END=226109763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	226109764	.	G	.	.	PASS	END=226109771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	226109772	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	226109773	.	T	.	.	PASS	END=226109781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	226109902	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:60
chr1	226109903	.	C	.	.	PASS	END=226109908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	226109909	.	C	.	.	PASS	END=226109915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	226109916	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:57:60
chr1	226109917	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:21:60
chr1	226109918	.	T	.	.	PASS	END=226109927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	226109928	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:42:60
chr1	226109929	.	C	.	.	PASS	END=226109939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	226109940	.	G	.	.	PASS	END=226109970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	226109971	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:42:60
chr1	226109972	.	C	.	.	PASS	END=226110046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	226110047	.	T	.	.	PASS	END=226110066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	226110067	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:32:60
chr1	226110068	.	G	.	.	PASS	END=226110083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	226110084	.	C	.	.	PASS	END=226110085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	226111387	.	C	.	.	LowGQX	END=226111486	GT	./.
chr1	226111668	.	C	.	.	LowGQX	END=226111694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226111695	.	C	.	.	LowGQX	.	GT	./.
chr1	226111696	.	G	.	.	LowGQX	END=226111705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226111706	.	A	.	.	LowGQX	.	GT	./.
chr1	226111707	.	C	.	.	LowGQX	END=226111719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226111720	.	C	.	.	LowGQX	.	GT	./.
chr1	226111721	.	G	.	.	LowGQX	END=226111726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226111727	.	C	.	.	LowGQX	.	GT	./.
chr1	226111728	.	G	.	.	LowGQX	END=226111754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226111755	.	A	.	.	LowGQX	END=226111756	GT	./.
chr1	226111757	.	G	.	.	LowGQX	END=226111770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226111771	.	C	.	.	LowGQX	.	GT	./.
chr1	226111772	.	A	.	.	LowGQX	END=226111773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226111774	.	A	.	.	LowGQX	.	GT	./.
chr1	226111775	.	G	.	.	LowGQX	END=226111776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226111777	.	C	.	.	LowGQX	END=226111827	GT	./.
chr1	226125090	.	C	.	.	PASS	END=226125104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	226125105	.	C	.	.	PASS	END=226125130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	226125131	.	C	.	.	PASS	END=226125155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	226125156	.	C	.	.	PASS	END=226125191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:59
chr1	226125192	.	C	.	.	PASS	END=226125345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:59
chr1	226125346	.	T	.	.	PASS	END=226125449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	226125450	.	G	.	.	PASS	END=226125503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:59
chr1	226125504	.	T	.	.	PASS	END=226125515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:59
chr1	226125516	.	A	.	.	PASS	END=226125533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	226125534	.	G	.	.	PASS	END=226125543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	226125543	.	G	GA	2828.45	PASS	DP=72;FS=0.000;HRun=1;HaplotypeScore=134.1631;MQ=60;MQ0=0;QD=39.28;SB=-719.85	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:7,65:72:99:2870,205,0:60:99:0.903
chr1	226125544	.	A	.	.	PASS	END=226125555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	226127010	.	C	.	.	PASS	END=226127047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	226127048	.	G	.	.	PASS	END=226127059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	226127060	.	C	.	.	PASS	END=226127083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:55
chr1	226127084	.	G	.	.	PASS	END=226127128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:49
chr1	226127129	.	C	.	.	PASS	END=226127181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:43
chr1	226127182	.	C	.	.	PASS	END=226127239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:42
chr1	226127240	.	G	.	.	PASS	END=226127295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:46
chr1	226127296	.	C	.	.	PASS	END=226127333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:55
chr1	226127334	.	C	.	.	PASS	END=226127351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	226127405	.	C	.	.	PASS	END=226127419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	226127420	.	T	.	.	PASS	END=226127442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:59
chr1	226127443	.	G	C	2196.55	PASS	BaseQRankSum=2.478;DP=174;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=14.4045;MQ=59;MQ0=0;MQRankSum=0.771;QD=12.62;ReadPosRankSum=1.120;SB=-1160.65	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:89,85:174:99:2227,0,2400:59:99:0.489
chr1	226127444	.	C	.	.	PASS	END=226127536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:52
chr1	226127537	.	C	.	.	PASS	END=226127595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:47
chr1	226127596	.	C	.	.	PASS	END=226127702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:277:99:47
chr1	226127703	.	C	.	.	PASS	END=226127727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:55
chr1	226127728	.	G	.	.	PASS	END=226127748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:58
chr1	226127749	.	A	.	.	PASS	END=226127753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	226128540	.	C	.	.	PASS	END=226128567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	226128568	.	C	.	.	PASS	END=226128614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	226128615	.	T	.	.	PASS	END=226128650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	226128651	.	G	.	.	PASS	END=226128659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	226128660	.	A	.	.	PASS	END=226128708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	226128709	.	G	.	.	PASS	END=226128795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	226128796	.	C	.	.	PASS	END=226128809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	226128810	.	A	.	.	PASS	END=226128840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	226128841	.	G	.	.	PASS	END=226128850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	226128851	.	T	.	.	PASS	END=226128864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	226128865	.	G	.	.	PASS	END=226128886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	226128887	.	G	.	.	PASS	END=226128891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:90:60
chr1	226173001	.	A	.	.	LowGQX	END=226173226	GT	./.
chr1	226175595	.	A	.	.	LowGQX	END=226175720	GT	./.
chr1	226175721	.	G	.	.	LowGQX	END=226176091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226178942	.	A	.	.	LowGQX	END=226179066	GT	./.
chr1	226180097	.	A	.	.	LowGQX	END=226180187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226180188	.	A	.	.	LowGQX	.	GT	./.
chr1	226180189	.	G	.	.	LowGQX	END=226180218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226180219	.	G	.	.	LowGQX	.	GT	./.
chr1	226180220	.	C	.	.	LowGQX	END=226180234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226180235	.	T	.	.	LowGQX	END=226180236	GT	./.
chr1	226180237	.	G	.	.	LowGQX	END=226180270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226180590	.	A	.	.	LowGQX	END=226180705	GT	./.
chr1	226182965	.	A	.	.	LowGQX	END=226183033	GT	./.
chr1	226183034	.	G	.	.	LowGQX	END=226183086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226186892	.	A	.	.	LowGQX	END=226187015	GT	./.
chr1	226252051	.	C	.	.	LowGQX	END=226252141	GT	./.
chr1	226252142	.	G	.	.	LowGQX	END=226252182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226253355	.	A	.	.	LowGQX	END=226253390	GT	./.
chr1	226253391	.	T	.	.	LowGQX	END=226253546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226253547	.	C	.	.	LowGQX	END=226253600	GT	./.
chr1	226259010	.	G	.	.	LowGQX	END=226259182	GT	./.
chr1	226334309	.	T	.	.	LowGQX	END=226334524	GT	./.
chr1	226340034	.	A	.	.	LowGQX	END=226340322	GT	./.
chr1	226342346	.	A	.	.	LowGQX	END=226342536	GT	./.
chr1	226346883	.	A	.	.	LowGQX	END=226346992	GT	./.
chr1	226346993	.	C	.	.	LowGQX	END=226347000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226347001	.	C	.	.	LowGQX	.	GT	./.
chr1	226347002	.	T	.	.	LowGQX	END=226347029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226347030	.	T	.	.	LowGQX	.	GT	./.
chr1	226347031	.	G	.	.	LowGQX	END=226347059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226347060	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	226347061	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226349200	.	A	.	.	LowGQX	END=226349223	GT	./.
chr1	226349224	.	A	.	.	LowGQX	END=226349293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226349294	.	A	.	.	LowGQX	.	GT	./.
chr1	226349295	.	A	.	.	LowGQX	END=226349341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226349342	.	A	.	.	LowGQX	END=226349343	GT	./.
chr1	226349344	.	G	.	.	LowGQX	END=226349368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226349369	.	C	.	.	LowGQX	.	GT	./.
chr1	226349370	.	C	.	.	LowGQX	END=226349373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226349374	.	G	.	.	LowGQX	END=226349392	GT	./.
chr1	226352488	.	A	.	.	LowGQX	END=226352497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226352498	.	T	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	226352499	.	T	.	.	LowGQX	END=226352560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226352561	.	A	.	.	LowGQX	END=226352632	GT	./.
chr1	226353558	.	A	.	.	LowGQX	END=226353703	GT	./.
chr1	226374078	.	T	.	.	LowGQX	END=226374387	GT	./.
chr1	226411370	.	G	.	.	LowGQX	END=226411457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226411458	.	G	.	.	LowGQX	END=226411606	GT	./.
chr1	226411607	.	C	.	.	LowGQX	END=226411668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226411669	.	A	.	.	LowGQX	.	GT	./.
chr1	226411670	.	A	.	.	LowGQX	END=226411709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226411710	.	T	.	.	LowGQX	.	GT	./.
chr1	226411711	.	A	.	.	LowGQX	END=226411748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226411749	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	226411750	.	C	.	.	LowGQX	END=226411777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226413183	.	G	.	.	LowGQX	END=226413515	GT	./.
chr1	226420200	.	A	.	.	LowGQX	END=226420309	GT	./.
chr1	226420792	.	A	.	.	LowGQX	END=226420896	GT	./.
chr1	226421043	.	A	.	.	LowGQX	END=226421226	GT	./.
chr1	226426670	.	A	.	.	LowGQX	END=226426684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226426685	.	T	.	.	LowGQX	END=226426839	GT	./.
chr1	226438477	.	T	.	.	LowGQX	END=226438629	GT	./.
chr1	226453232	.	A	.	.	LowGQX	END=226453361	GT	./.
chr1	226453362	.	A	.	.	LowGQX	END=226453391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226453912	.	A	.	.	LowGQX	END=226454035	GT	./.
chr1	226455656	.	A	.	.	LowGQX	END=226455793	GT	./.
chr1	226465474	.	A	.	.	LowGQX	END=226465635	GT	./.
chr1	226474032	.	A	.	.	LowGQX	END=226474115	GT	./.
chr1	226474116	.	C	.	.	LowGQX	END=226474131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226474132	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	226474133	.	A	.	.	LowGQX	END=226474161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226475332	.	A	.	.	LowGQX	END=226475542	GT	./.
chr1	226483541	.	A	.	.	LowGQX	END=226483649	GT	./.
chr1	226485418	.	A	.	.	LowGQX	END=226485517	GT	./.
chr1	226488841	.	C	.	.	LowGQX	END=226488940	GT	./.
chr1	226496808	.	A	.	.	LowGQX	END=226497290	GT	./.
chr1	226497327	.	A	.	.	LowGQX	END=226497570	GT	./.
chr1	226549110	.	C	.	.	PASS	END=226549134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	226549135	.	G	.	.	PASS	END=226549147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	226549148	.	C	.	.	PASS	END=226549243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	226549244	.	T	.	.	PASS	END=226549266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	226549267	.	C	.	.	PASS	END=226549289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	226549290	.	T	.	.	PASS	END=226549293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	226549619	.	T	.	.	PASS	END=226549674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	226549675	.	A	.	.	PASS	END=226549734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	226549735	.	A	.	.	PASS	END=226549737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	226549738	.	A	.	.	PASS	END=226549755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	226549756	.	T	.	.	PASS	END=226549808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	226549809	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:72:60
chr1	226549810	.	A	.	.	PASS	END=226549824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	226549825	.	A	.	.	PASS	END=226549829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	226549830	.	T	.	.	PASS	END=226549835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	226550749	.	G	.	.	PASS	END=226550753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	226550754	.	G	.	.	PASS	END=226550809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	226550810	.	G	.	.	PASS	END=226550848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	226550849	.	C	.	.	PASS	END=226550892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	226550893	.	C	.	.	PASS	END=226550912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	226551593	.	T	.	.	PASS	END=226551620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	226551621	.	G	.	.	PASS	END=226551637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	226551638	.	A	.	.	PASS	END=226551691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	226551692	.	C	.	.	PASS	END=226551778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	226551779	.	G	.	.	PASS	END=226551822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	226552652	.	G	.	.	PASS	END=226552663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	226552664	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:87:60
chr1	226552665	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:54:60
chr1	226552666	.	C	.	.	PASS	END=226552677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	226552678	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:72:60
chr1	226552679	.	C	.	.	PASS	END=226552693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	226552694	.	G	.	.	PASS	END=226552724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	226552725	.	A	.	.	PASS	END=226552763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	226552764	.	G	.	.	PASS	END=226552851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	226552852	.	A	.	.	PASS	END=226552875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	226552876	.	A	.	.	PASS	END=226552906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	226553604	.	G	.	.	PASS	END=226553628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	226553629	.	G	.	.	PASS	END=226553658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	226553659	.	A	.	.	PASS	END=226553681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	226553682	.	G	.	.	PASS	END=226553775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	226553776	.	T	.	.	PASS	END=226553804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	226555130	.	T	.	.	PASS	END=226555155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	226555156	.	C	.	.	PASS	END=226555200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	226555201	.	T	.	.	PASS	END=226555255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	226555256	.	C	.	.	PASS	END=226555268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	226555269	.	A	.	.	PASS	END=226555270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	226555271	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:66:60
chr1	226555272	.	T	.	.	PASS	END=226555302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr1	226555303	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:61:60
chr1	226555304	.	C	.	.	PASS	END=226555308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	226555309	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:52:60
chr1	226555310	.	C	.	.	PASS	END=226555328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	226555329	.	C	.	.	PASS	END=226555330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:45:60
chr1	226555331	.	C	.	.	PASS	END=226555344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	226555345	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:40:60
chr1	226555346	.	A	.	.	PASS	END=226555347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	226555348	.	G	A	223.03	PASS	BaseQRankSum=1.917;DP=35;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.9993;MQ=60;MQ0=0;MQRankSum=-1.333;QD=6.37;ReadPosRankSum=0.055;SB=-57.57	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:25,10:35:99:253,0,523:60:99:0.286
chr1	226555349	.	G	.	.	PASS	END=226555356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	226555357	.	G	.	.	PASS	END=226555360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	226555849	.	G	.	.	PASS	END=226555858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	226555859	.	A	.	.	PASS	END=226555865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	226555866	.	C	.	.	PASS	END=226555873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	226555874	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:60:60
chr1	226555875	.	A	.	.	PASS	END=226555878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	226555879	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:63:60
chr1	226555880	.	C	.	.	PASS	END=226555897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	226555898	.	A	.	.	PASS	END=226555917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	226555918	.	G	.	.	PASS	END=226556002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	226556003	.	C	.	.	PASS	END=226556044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	226556045	.	A	.	.	PASS	END=226556056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	226556057	.	A	.	.	PASS	END=226556073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	226558084	.	T	.	.	PASS	END=226558089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	226558090	.	G	.	.	PASS	END=226558094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	226558095	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:57:60
chr1	226558096	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:42:60
chr1	226558097	.	G	.	.	PASS	END=226558099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	226558100	.	G	.	.	PASS	END=226558108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	226558109	.	G	.	.	PASS	END=226558114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	226558115	.	C	.	.	PASS	END=226558116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	226558117	.	T	.	.	PASS	END=226558133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	226558134	.	C	.	.	PASS	END=226558155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	226558156	.	G	.	.	PASS	END=226558256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	226558257	.	T	.	.	PASS	END=226558266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	226558267	.	G	.	.	PASS	END=226558269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	226561876	.	A	.	.	PASS	END=226561972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr1	226561973	.	A	.	.	PASS	END=226562023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	226562024	.	T	.	.	PASS	END=226562081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	226562082	.	A	.	.	PASS	END=226562096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	226562097	.	A	.	.	PASS	END=226562106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	226564758	.	T	.	.	PASS	END=226564765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	226564766	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:27:60
chr1	226564767	.	C	.	.	PASS	END=226564768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	226564769	.	T	.	.	PASS	END=226564771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	226564772	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:24:60
chr1	226564773	.	C	.	.	PASS	END=226564785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	226564786	.	G	.	.	PASS	END=226564805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	226564806	.	T	.	.	PASS	END=226564853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	226564854	.	C	.	.	PASS	END=226564936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	226564937	.	G	.	.	PASS	END=226564960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	226564961	.	C	.	.	PASS	END=226564976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	226564977	.	A	.	.	PASS	END=226564983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:77:60
chr1	226564984	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:63:60
chr1	226564985	.	A	.	.	PASS	END=226565018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	226565019	.	A	.	.	PASS	END=226565022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	226565023	.	T	.	.	PASS	END=226565025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	226565026	.	C	.	.	PASS	END=226565033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	226565034	.	C	.	.	PASS	END=226565037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	226565038	.	T	.	.	PASS	END=226565043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	226565044	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:3:60
chr1	226565045	.	C	.	.	PASS	END=226565047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:60
chr1	226565048	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:10:60
chr1	226565049	.	T	.	.	PASS	END=226565055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	226566792	.	G	.	.	PASS	END=226566807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	226566808	.	T	.	.	PASS	END=226566823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	226566824	.	C	.	.	PASS	END=226566877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	226566878	.	G	.	.	PASS	END=226566939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	226566940	.	C	.	.	PASS	END=226566971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	226566972	.	A	.	.	PASS	END=226566976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	226566977	.	T	.	.	PASS	END=226567026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	226567223	.	G	.	.	PASS	END=226567283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	226567284	.	A	.	.	PASS	END=226567324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	226567325	.	T	.	.	PASS	END=226567350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	226567351	.	A	.	.	PASS	END=226567393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	226567572	.	C	.	.	PASS	END=226567621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:95:60
chr1	226567622	.	C	.	.	PASS	END=226567663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	226567664	.	G	.	.	PASS	END=226567715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	226567716	.	C	.	.	PASS	END=226567782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	226567783	.	G	.	.	PASS	END=226567842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	226567843	.	C	.	.	PASS	END=226567871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	226567872	.	A	.	.	PASS	END=226567916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	226568718	.	C	.	.	PASS	END=226568732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	226568733	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:54:60
chr1	226568734	.	A	.	.	PASS	END=226568760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	226568761	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:48:60
chr1	226568762	.	A	.	.	PASS	END=226568774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	226568775	.	T	.	.	PASS	END=226568787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	226568788	.	G	.	.	PASS	END=226568818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	226568819	.	C	.	.	PASS	END=226568911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	226568912	.	G	.	.	PASS	END=226568939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:92:60
chr1	226568940	.	G	.	.	PASS	END=226568942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	226568943	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:72:60
chr1	226568944	.	A	.	.	PASS	END=226568960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	226570686	.	G	.	.	PASS	END=226570722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	226570723	.	C	.	.	PASS	END=226570775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	226570776	.	C	.	.	PASS	END=226570799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	226570800	.	C	.	.	PASS	END=226570839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	226570840	.	T	C	1773.99	PASS	DP=66;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;QD=26.88;SB=-863.95	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,66:66:99:1807,138,0:60:99:1.000
chr1	226570841	.	T	.	.	PASS	END=226570903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	226570904	.	A	.	.	PASS	END=226570930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr1	226570931	.	T	.	.	PASS	END=226570933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	226570934	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:57:60
chr1	226570935	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:90:60
chr1	226573154	.	G	.	.	PASS	END=226573196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:60
chr1	226573197	.	C	.	.	PASS	END=226573212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	226573213	.	T	.	.	PASS	END=226573223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	226573224	.	T	.	.	PASS	END=226573285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	226573286	.	G	.	.	PASS	END=226573371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	226573372	.	G	.	.	PASS	END=226573400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	226573401	.	A	.	.	PASS	END=226573432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	226573976	.	C	.	.	PASS	END=226573992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	226573993	.	C	.	.	PASS	END=226574010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	226574011	.	C	.	.	PASS	END=226574089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	226574090	.	T	.	.	PASS	END=226574129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	226574130	.	A	.	.	PASS	END=226574155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	226574156	.	C	.	.	PASS	END=226574185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	226574186	.	A	.	.	PASS	END=226574194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	226576306	.	G	.	.	PASS	END=226576329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	226576330	.	A	.	.	PASS	END=226576358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr1	226576359	.	T	.	.	PASS	END=226576493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:296:99:60
chr1	226576494	.	A	.	.	PASS	END=226576507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:60
chr1	226578060	.	C	.	.	PASS	END=226578089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	226578090	.	A	.	.	PASS	END=226578098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	226578099	.	T	C	1523.65	PASS	BaseQRankSum=0.808;DP=115;Dels=0.00;FS=3.197;HRun=0;HaplotypeScore=36.2331;MQ=60;MQ0=0;MQRankSum=-0.344;QD=13.25;ReadPosRankSum=0.473;SB=-302.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:58,57:115:99:1554,0,1355:60:99:0.496
chr1	226578100	.	G	.	.	PASS	END=226578125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	226578126	.	C	.	.	PASS	END=226578160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	226578161	.	T	.	.	PASS	END=226578275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	226578276	.	A	.	.	PASS	END=226578310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	226578311	.	C	.	.	PASS	END=226578330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	226578331	.	G	.	.	PASS	END=226578350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	226578351	.	C	.	.	PASS	END=226578376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	226579849	.	T	.	.	PASS	END=226579913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	226579914	.	C	.	.	PASS	END=226580020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	226580021	.	G	.	.	PASS	END=226580055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	226580056	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:73:69:60
chr1	226580057	.	C	.	.	PASS	END=226580066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	226580560	.	C	.	.	LowGQX	END=226580678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226580679	.	G	.	.	LowGQX	END=226580710	GT	./.
chr1	226589732	.	A	.	.	LowGQX	END=226589746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	226589747	.	A	.	.	LowGQX	END=226589751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226589752	.	G	.	.	LowGQX	END=226589753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	226589754	.	G	.	.	LowGQX	END=226589756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	226589757	.	C	.	.	LowGQX	END=226589760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	226589761	.	A	.	.	LowGQX	END=226589762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	226589763	.	G	.	.	LowGQX	END=226589774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	226589775	.	T	.	.	LowGQX	END=226589776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	226589777	.	A	.	.	LowGQX	END=226589783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	226589784	.	C	.	.	LowGQX	END=226589785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	226589786	.	C	.	.	LowGQX	END=226589789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	226589790	.	A	.	.	PASS	END=226589792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	226589793	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:3:60
chr1	226589794	.	T	.	.	PASS	END=226589806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	226589807	.	G	.	.	PASS	END=226589821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	226589822	.	C	.	.	PASS	END=226589834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	226589835	.	G	.	.	PASS	END=226589853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	226589854	.	G	.	.	PASS	END=226589866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	226589867	.	G	.	.	PASS	END=226589894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	226589895	.	C	.	.	PASS	END=226589902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	226589903	.	G	.	.	PASS	END=226589908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	226589909	.	A	.	.	PASS	END=226590047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	226590048	.	C	.	.	PASS	END=226590056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	226590057	.	G	.	.	PASS	END=226590059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	226590060	.	T	.	.	PASS	END=226590095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	226590096	.	A	.	.	PASS	END=226590131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	226595460	.	T	.	.	PASS	END=226595470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:57:60
chr1	226595471	.	C	.	.	PASS	END=226595480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	226595481	.	C	.	.	PASS	END=226595497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	226595498	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:66:60
chr1	226595499	.	A	.	.	PASS	END=226595503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	226595504	.	C	.	.	PASS	END=226595505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:69:60
chr1	226595506	.	C	.	.	PASS	END=226595532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:81:60
chr1	226595533	.	A	.	.	PASS	END=226595621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	226595622	.	C	.	.	PASS	END=226595665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:85:60
chr1	226595666	.	A	.	.	PASS	END=226595681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	226736560	.	G	.	.	LowGQX	END=226736873	GT	./.
chr1	226784501	.	A	.	.	LowGQX	END=226784700	GT	./.
chr1	226785057	.	T	.	.	LowGQX	END=226785156	GT	./.
chr1	226788322	.	C	.	.	LowGQX	END=226788421	GT	./.
chr1	226789648	.	T	.	.	LowGQX	END=226789705	GT	./.
chr1	226789706	.	G	.	.	LowGQX	END=226789728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226789729	.	A	.	.	LowGQX	.	GT	./.
chr1	226789730	.	C	.	.	LowGQX	END=226789745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226789746	.	A	.	.	LowGQX	.	GT	./.
chr1	226789747	.	C	.	.	LowGQX	END=226789748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226789749	.	G	.	.	LowGQX	.	GT	./.
chr1	226789750	.	G	.	.	LowGQX	END=226789756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226789757	.	T	.	.	LowGQX	.	GT	./.
chr1	226789758	.	G	.	.	LowGQX	END=226789761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226789762	.	A	.	.	LowGQX	.	GT	./.
chr1	226789763	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226789764	.	A	.	.	LowGQX	END=226789765	GT	./.
chr1	226789766	.	C	.	.	LowGQX	END=226789772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226822370	.	G	.	.	LowGQX	END=226822499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226822500	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	226822501	.	C	.	.	LowGQX	END=226822513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226822514	.	T	.	.	LowGQX	END=226822589	GT	./.
chr1	226825366	.	A	.	.	LowGQX	END=226825465	GT	./.
chr1	226827256	.	A	.	.	LowGQX	END=226827263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226827264	.	G	.	.	LowGQX	.	GT	./.
chr1	226827265	.	T	.	.	LowGQX	END=226827266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226827267	.	A	.	.	LowGQX	.	GT	./.
chr1	226827268	.	T	.	.	LowGQX	END=226827275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226827276	.	T	.	.	LowGQX	END=226827277	GT	./.
chr1	226827278	.	T	.	.	LowGQX	END=226827306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226827307	.	T	.	.	LowGQX	.	GT	./.
chr1	226827308	.	G	.	.	LowGQX	END=226827339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226827340	.	T	.	.	LowGQX	.	GT	./.
chr1	226827341	.	T	.	.	LowGQX	END=226827343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226827344	.	C	A	7.08	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=3.54;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:36,3,0:60:3:1.000
chr1	226827345	.	G	.	.	LowGQX	END=226827359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226827360	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	226827361	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226829620	.	A	.	.	LowGQX	END=226829828	GT	./.
chr1	226834866	.	A	.	.	LowGQX	END=226834943	GT	./.
chr1	226834944	.	C	.	.	LowGQX	END=226835009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226835010	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	226835011	.	G	.	.	LowGQX	END=226835062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	226835063	.	G	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	226835064	.	C	.	.	LowGQX	END=226835083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226836371	.	A	.	.	LowGQX	END=226836474	GT	./.
chr1	226895565	.	A	.	.	LowGQX	END=226895664	GT	./.
chr1	226923226	.	A	.	.	LowGQX	END=226923261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226923262	.	A	.	.	LowGQX	END=226923994	GT	./.
chr1	226923995	.	C	.	.	LowGQX	END=226924134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	226924135	.	A	.	.	LowGQX	END=226924542	GT	./.
chr1	226924543	.	C	.	.	LowGQX	END=226924684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226924685	.	A	.	.	LowGQX	.	GT	./.
chr1	226924686	.	G	.	.	LowGQX	END=226924693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226924694	.	C	.	.	LowGQX	END=226924763	GT	./.
chr1	226924764	.	C	.	.	LowGQX	END=226924865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226924866	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	226924867	.	C	.	.	LowGQX	END=226924914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	226924915	.	A	.	.	LowGQX	END=226925164	GT	./.
chr1	227068336	.	C	.	.	LowGQX	END=227068435	GT	./.
chr1	227069549	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:93:60
chr1	227069550	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:62:60
chr1	227069551	.	A	.	.	PASS	END=227069566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	227069567	.	G	.	.	PASS	END=227069593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	227069594	.	T	.	.	PASS	END=227069617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	227069618	.	T	.	.	PASS	END=227069676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	227069677	.	T	C	1123.29	PASS	BaseQRankSum=1.069;DP=87;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=7.6178;MQ=60;MQ0=0;MQRankSum=0.106;QD=12.91;ReadPosRankSum=-0.711;SB=-677.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:40,47:87:99:1153,0,944:60:99:0.540
chr1	227069678	.	G	.	.	PASS	END=227069726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	227069727	.	A	.	.	PASS	END=227069736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	227069737	.	C	T	662.44	PASS	BaseQRankSum=1.336;DP=59;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.9993;MQ=60;MQ0=0;MQRankSum=-0.328;QD=11.23;ReadPosRankSum=-0.084;SB=-323.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,26:59:99:692,0,754:60:99:0.441
chr1	227069738	.	A	.	.	PASS	END=227069754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	227069755	.	T	.	.	PASS	END=227069766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	227069767	.	C	.	.	PASS	END=227069786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	227069787	.	C	.	.	PASS	END=227069800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	227071355	.	T	.	.	PASS	END=227071363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	227071364	.	G	A	356.82	SB	BaseQRankSum=0.789;DP=25;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.8302;MQ=60;MQ0=0;MQRankSum=1.387;QD=14.27;ReadPosRankSum=0.571;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,12:25:99:387,0,388:60:99:0.480
chr1	227071365	.	T	.	.	PASS	END=227071370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	227071371	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:57:60
chr1	227071372	.	C	.	.	PASS	END=227071376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	227071377	.	T	C	323.21	SB	BaseQRankSum=-1.864;DP=29;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-0.724;QD=11.15;ReadPosRankSum=0.460;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:16,13:29:99:353,0,508:60:99:0.448
chr1	227071378	.	G	.	.	PASS	END=227071396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	227071397	.	T	.	.	PASS	END=227071414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	227071415	.	G	.	.	PASS	END=227071439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	227071440	.	A	.	.	PASS	END=227071476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	227071477	.	G	.	.	PASS	END=227071524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	227071525	.	C	T	741.66	PASS	BaseQRankSum=2.155;DP=95;Dels=0.00;FS=7.772;HRun=0;HaplotypeScore=10.5193;MQ=60;MQ0=0;MQRankSum=-0.020;QD=7.81;ReadPosRankSum=0.710;SB=-206.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:64,31:95:99:772,0,1449:60:99:0.326
chr1	227071526	.	G	.	.	PASS	END=227071563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	227071564	.	C	.	.	PASS	END=227071585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	227071586	.	T	.	.	PASS	END=227071602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:59
chr1	227071603	.	A	.	.	PASS	END=227071613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:59
chr1	227071614	.	G	.	.	PASS	END=227071626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	227071627	.	T	.	.	LowGQX	END=227071628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	227071629	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	227071630	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	227071631	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	227071632	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	227071633	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	227071634	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	227071635	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	227071636	.	G	.	.	LowGQX	END=227071639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	227071640	.	G	.	.	LowGQX	END=227071641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	227071642	.	A	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:4:3.01:60:3
chr1	227071643	.	G	.	.	LowGQX	END=227071650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	227071651	.	G	.	.	LowGQX	END=227071652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	227071653	.	G	.	.	LowGQX	END=227071655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	227071656	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	227071657	.	G	.	.	LowGQX	END=227071659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	227071660	.	C	.	.	LowGQX	END=227071665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	227071666	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	227071667	.	G	.	.	LowGQX	.	GT	./.
chr1	227071668	.	C	.	.	LowGQX	END=227071669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	227071670	.	A	.	.	LowGQX	.	GT	./.
chr1	227071671	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:58
chr1	227073188	.	C	.	.	PASS	END=227073196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	227073197	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:54:60
chr1	227073198	.	A	.	.	PASS	END=227073211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	227073212	.	G	.	.	PASS	END=227073231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	227073232	.	C	.	.	PASS	END=227073281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	227073282	.	C	.	.	PASS	END=227073306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	227073307	.	C	.	.	PASS	END=227073362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	227073363	.	A	.	.	PASS	END=227073388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	227073389	.	C	.	.	PASS	END=227073409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	227073410	.	G	T	674.91	PASS	BaseQRankSum=2.466;DP=59;Dels=0.00;FS=1.087;HRun=0;HaplotypeScore=2.9462;MQ=60;MQ0=0;MQRankSum=0.786;QD=11.44;ReadPosRankSum=1.315;SB=-290.46	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,28:59:99:705,0,687:60:99:0.483
chr1	227073411	.	C	.	.	PASS	END=227073431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	227075741	.	A	.	.	PASS	END=227075761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	227075762	.	C	.	.	PASS	END=227075867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	227075868	.	C	.	.	PASS	END=227075901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	227075902	.	C	.	.	PASS	END=227075910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	227076479	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:12:60
chr1	227076480	.	T	.	.	PASS	END=227076488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	227076489	.	T	.	.	PASS	END=227076509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	227076510	.	G	.	.	PASS	END=227076512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	227076513	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:51:60
chr1	227076514	.	C	.	.	PASS	END=227076520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	227076521	.	G	.	.	PASS	END=227076536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	227076537	.	C	.	.	PASS	END=227076574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:77:60
chr1	227076575	.	C	.	.	PASS	END=227076611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	227076612	.	G	.	.	PASS	END=227076683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	227076684	.	C	.	.	PASS	END=227076720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	227076721	.	G	.	.	PASS	END=227076735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:78:60
chr1	227076736	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:69:60
chr1	227076737	.	C	.	.	PASS	END=227076761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:78:60
chr1	227076762	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:49:60
chr1	227076763	.	C	.	.	PASS	END=227076768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr1	227076769	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:72:60
chr1	227076770	.	G	.	.	PASS	END=227076771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	227076772	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr1	227076773	.	G	.	.	PASS	END=227076780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	227076781	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:63:60
chr1	227076782	.	G	.	.	PASS	END=227076789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	227076790	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr1	227076791	.	G	.	.	PASS	END=227076792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:66:60
chr1	227076793	.	C	.	.	PASS	END=227076801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	227077685	.	T	.	.	PASS	END=227077727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	227077728	.	C	.	.	PASS	END=227077817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	227077818	.	T	.	.	PASS	END=227077854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	227077855	.	T	.	.	PASS	END=227077878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	227077879	.	C	.	.	PASS	END=227077885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	227078928	.	G	.	.	PASS	END=227078935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	227078936	.	C	.	.	PASS	END=227078954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	227078955	.	T	C	2552.72	PASS	BaseQRankSum=2.730;DP=190;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=25.0078;MQ=60;MQ0=0;MQRankSum=0.548;QD=13.44;ReadPosRankSum=-1.338;SB=-848.87	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:87,102:190:99:2583,0,2010:60:99:0.540
chr1	227078956	.	G	.	.	PASS	END=227079077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	227079078	.	A	.	.	PASS	END=227079098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	227079099	.	G	.	.	PASS	END=227079113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	227079393	.	T	.	.	PASS	END=227079423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	227079424	.	T	.	.	PASS	END=227079506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	227079507	.	C	.	.	PASS	END=227079518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	227079519	.	G	.	.	PASS	END=227079539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	227079540	.	A	.	.	PASS	END=227079552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	227079553	.	G	.	.	PASS	END=227079573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	227079574	.	T	.	.	PASS	END=227079597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	227081657	.	T	.	.	PASS	END=227081658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	227081659	.	C	.	.	PASS	END=227081661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	227081662	.	T	.	.	PASS	END=227081668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	227081669	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:48:60
chr1	227081670	.	C	.	.	PASS	END=227081673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	227081674	.	T	.	.	PASS	END=227081677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	227081678	.	C	.	.	PASS	END=227081689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	227081690	.	C	.	.	PASS	END=227081707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	227081708	.	G	.	.	PASS	END=227081737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	227081738	.	T	.	.	PASS	END=227081789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	227081790	.	G	.	.	PASS	END=227081849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	227081850	.	G	A	1434.55	PASS	BaseQRankSum=-1.547;DP=135;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=17.1398;MQ=60;MQ0=0;MQRankSum=1.323;QD=10.63;ReadPosRankSum=0.706;SB=-709.04	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:66,69:135:99:1465,0,1538:60:99:0.511
chr1	227081851	.	C	.	.	PASS	END=227081877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	227083074	.	C	.	.	PASS	END=227083083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	227083084	.	C	.	.	PASS	END=227083096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	227083097	.	C	.	.	PASS	END=227083106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	227083107	.	C	.	.	PASS	END=227083126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	227083127	.	C	.	.	PASS	END=227083147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	227083148	.	G	.	.	PASS	END=227083250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	227083251	.	A	.	.	PASS	END=227083276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	227083277	.	C	.	.	PASS	END=227083290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:84:60
chr1	227083291	.	G	.	.	PASS	END=227083297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	227083298	.	A	.	.	PASS	END=227083309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	227083310	.	G	.	.	PASS	END=227083331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	227149036	.	A	.	.	PASS	END=227149038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	227149039	.	G	.	.	PASS	END=227149061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	227149062	.	G	.	.	PASS	END=227149095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:87:60
chr1	227149096	.	A	.	.	PASS	END=227149189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	227149190	.	A	.	.	PASS	END=227149202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	227149203	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:69:60
chr1	227149204	.	G	.	.	PASS	END=227149209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	227149210	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:57:60
chr1	227149211	.	C	.	.	PASS	END=227149221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	227149222	.	A	.	.	PASS	END=227149226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	227149227	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:42:60
chr1	227149228	.	G	.	.	PASS	END=227149246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	227149247	.	T	.	.	PASS	END=227149252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr1	227149253	.	G	.	.	PASS	END=227149255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	227149256	.	A	.	.	PASS	END=227149258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	227149259	.	T	.	.	PASS	END=227149262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	227149263	.	G	.	.	PASS	END=227149264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	227149265	.	T	.	.	PASS	END=227149266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	227149267	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:21:60
chr1	227149268	.	G	.	.	PASS	END=227149270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	227149271	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	227149272	.	G	.	.	PASS	END=227149273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	227149274	.	C	.	.	LowGQX	END=227149275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:60
chr1	227149276	.	G	.	.	PASS	END=227149278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	227149279	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	227149280	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:60
chr1	227149281	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:15:60
chr1	227149282	.	G	.	.	PASS	END=227149284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	227149285	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:21:60
chr1	227149286	.	G	.	.	PASS	END=227149289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:60
chr1	227149290	.	T	.	45.04	LowGQX	DP=12;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:9:12:15.05:60:15
chr1	227149291	.	G	.	.	PASS	END=227149292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	227149293	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	227149294	.	G	.	.	PASS	END=227149296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	227149297	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	227149298	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:36:60
chr1	227149299	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	227149300	.	A	.	.	PASS	END=227149301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	227149302	.	G	.	.	LowGQX	END=227149303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	227149304	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	227149305	.	G	.	.	LowGQX	END=227149306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	227149307	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:9:60
chr1	227149308	.	G	.	.	LowGQX	END=227149309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	227149310	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	227149311	.	A	.	.	LowGQX	END=227149314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	227152650	.	G	.	.	PASS	END=227152673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	227152674	.	C	.	.	PASS	END=227152694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	227152695	.	C	.	.	PASS	END=227152753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	227152754	.	G	.	.	PASS	END=227152789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	227152790	.	C	.	.	PASS	END=227152832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr1	227152833	.	C	.	.	PASS	END=227152894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:306:99:60
chr1	227152895	.	C	.	.	PASS	END=227152989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:321:99:60
chr1	227152990	.	T	.	.	PASS	END=227153041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr1	227153042	.	C	.	.	PASS	END=227153071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr1	227153072	.	G	.	.	PASS	END=227153109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	227153110	.	C	.	.	PASS	END=227153124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	227153125	.	G	.	.	PASS	END=227153161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	227153162	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:78:99:60
chr1	227153321	.	G	.	.	PASS	END=227153365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	227153366	.	C	.	.	PASS	END=227153439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	227153440	.	T	.	.	PASS	END=227153461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	227153462	.	A	.	.	PASS	END=227153476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	227153477	.	C	.	.	PASS	END=227153489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	227165099	.	G	.	.	PASS	END=227165108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	227165109	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:72:60
chr1	227165110	.	C	.	.	PASS	END=227165125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	227165126	.	G	.	.	PASS	END=227165170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	227165171	.	T	.	.	PASS	END=227165230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:81:60
chr1	227165231	.	C	.	.	PASS	END=227165267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:78:60
chr1	227165268	.	A	.	.	PASS	END=227165275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr1	227169677	.	C	.	.	PASS	END=227169717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	227169718	.	C	.	.	PASS	END=227169808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	227169809	.	G	.	.	PASS	END=227169829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	227169830	.	G	.	.	PASS	END=227169871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	227169872	.	T	.	.	PASS	END=227169891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	227169892	.	T	.	.	PASS	END=227169901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	227170328	.	G	.	.	PASS	END=227170350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	227170351	.	C	.	.	PASS	END=227170449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	227170450	.	C	.	.	PASS	END=227170506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	227170507	.	C	.	.	PASS	END=227170515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	227170544	.	G	.	.	PASS	END=227170574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	227170575	.	T	.	.	PASS	END=227170707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	227170708	.	C	.	.	PASS	END=227170737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	227170738	.	A	.	.	PASS	END=227170763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	227170764	.	C	.	.	PASS	END=227170767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	227170768	.	T	C	1258.63	PASS	BaseQRankSum=0.222;DP=79;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7771;MQ=60;MQ0=0;MQRankSum=1.248;QD=15.93;ReadPosRankSum=0.597;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,44:79:99:1289,0,997:60:99:0.557
chr1	227170769	.	G	.	.	PASS	END=227170786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	227171202	.	G	.	.	PASS	END=227171205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	227171206	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:60:22:60
chr1	227171207	.	C	.	.	PASS	END=227171231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	227171232	.	G	.	.	PASS	END=227171253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	227171254	.	A	.	.	PASS	END=227171272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	227171273	.	C	.	.	PASS	END=227171303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	227171304	.	G	.	.	PASS	END=227171385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	227171411	.	G	.	.	PASS	END=227171443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	227171444	.	C	.	.	PASS	END=227171499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	227171500	.	G	.	.	PASS	END=227171570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	227171571	.	G	.	.	PASS	END=227171584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	227171584	.	GT	G	2164.64	PASS	BaseQRankSum=-1.056;DP=114;FS=2.448;HRun=3;HaplotypeScore=228.6691;MQ=60;MQ0=0;MQRankSum=-0.317;QD=18.99;ReadPosRankSum=0.428;SB=-931.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:50,62:114:99:2204,0,1631:60:99:0.554
chr1	227171585	.	T	.	126.27	PASS	DP=112;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:50:50:96.27:60:96
chr1	227171586	.	T	.	.	PASS	END=227171606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	227171744	.	G	.	.	PASS	END=227171750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	227171751	.	G	.	.	PASS	END=227171763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	227171764	.	G	.	.	PASS	END=227171800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:267:99:60
chr1	227171801	.	G	.	.	PASS	END=227171854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:355:99:60
chr1	227171855	.	C	.	.	PASS	END=227171924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:372:99:60
chr1	227171925	.	A	.	.	PASS	END=227171965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:285:99:60
chr1	227171966	.	C	.	.	PASS	END=227171981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr1	227171982	.	T	.	.	PASS	END=227171987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	227172198	.	G	.	.	PASS	END=227172222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:96:60
chr1	227172223	.	A	.	.	PASS	END=227172240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	227172241	.	G	.	.	PASS	END=227172286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	227172287	.	G	.	.	PASS	END=227172289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	227172290	.	C	T	1704.72	PASS	BaseQRankSum=1.237;DP=158;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=16.1826;MQ=60;MQ0=0;MQRankSum=-2.326;QD=10.79;ReadPosRankSum=1.011;SB=-873.92	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:82,76:158:99:1735,0,2111:60:99:0.481
chr1	227172291	.	G	.	.	PASS	END=227172375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	227172376	.	C	.	.	PASS	END=227172407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	227172526	.	C	.	.	PASS	END=227172600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	227172601	.	A	.	.	PASS	END=227172652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	227172653	.	A	.	.	PASS	END=227172693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	227172904	.	G	.	.	PASS	END=227172907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	227172908	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr1	227172909	.	T	.	.	PASS	END=227172915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	227172916	.	T	.	.	PASS	END=227172929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	227172930	.	G	.	.	PASS	END=227172934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	227172935	.	C	G	877.97	PASS	BaseQRankSum=1.606;DP=52;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.6808;MQ=60;MQ0=0;MQRankSum=-0.875;QD=16.88;ReadPosRankSum=2.952;SB=-420.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:18,34:52:99:908,0,407:60:99:0.654
chr1	227172936	.	C	.	.	PASS	END=227172954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	227172955	.	A	.	.	PASS	END=227172990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	227172991	.	G	.	.	PASS	END=227173085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	227173086	.	C	.	.	PASS	END=227173092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	227174103	.	G	.	.	PASS	END=227174109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	227174110	.	G	.	.	PASS	END=227174114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	227174115	.	G	.	.	PASS	END=227174124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	227174125	.	C	.	.	PASS	END=227174130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	227174131	.	T	.	.	PASS	END=227174144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	227174145	.	T	C	359.43	PASS	BaseQRankSum=-0.343;DP=33;Dels=0.00;FS=4.389;HRun=1;HaplotypeScore=7.5754;MQ=60;MQ0=0;MQRankSum=-0.886;QD=10.89;ReadPosRankSum=0.163;SB=-139.21	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:18,15:33:99:389,0,474:60:99:0.455
chr1	227174146	.	T	.	.	PASS	END=227174152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	227174153	.	G	.	.	PASS	END=227174170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	227174171	.	C	.	.	PASS	END=227174187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	227174188	.	T	.	.	PASS	END=227174209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	227174210	.	T	C	1282.20	PASS	BaseQRankSum=-0.803;DP=90;Dels=0.00;FS=4.711;HRun=1;HaplotypeScore=11.5213;MQ=60;MQ0=0;MQRankSum=0.487;QD=14.25;ReadPosRankSum=0.212;SB=-571.52	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,56:90:99:1312,0,764:60:99:0.622
chr1	227174211	.	G	.	.	PASS	END=227174328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	227174329	.	A	.	.	PASS	END=227174351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	227174352	.	T	.	.	PASS	END=227174388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	227174389	.	T	.	.	PASS	END=227174408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:80:60
chr1	227174409	.	A	.	.	PASS	END=227174421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	227174422	.	G	.	.	PASS	END=227174429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	227174430	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:39:60
chr1	227174431	.	A	.	.	PASS	END=227174435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	227174436	.	T	.	.	PASS	END=227174441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	227174442	.	T	.	.	PASS	END=227174443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	227174444	.	C	.	.	PASS	END=227174448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	227174449	.	C	.	.	PASS	END=227174457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	227174458	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:10:60
chr1	227174459	.	C	.	.	PASS	END=227174483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	227174484	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:3:60
chr1	227174485	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	227174486	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	227174487	.	A	.	.	PASS	END=227174488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	227174489	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:60
chr1	227181927	.	T	.	.	LowGQX	END=227182102	GT	./.
chr1	227182522	.	A	.	.	LowGQX	END=227182536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227182537	.	T	.	.	LowGQX	END=227182683	GT	./.
chr1	227192618	.	T	.	.	LowGQX	END=227192814	GT	./.
chr1	227198578	.	C	.	.	LowGQX	END=227198764	GT	./.
chr1	227203779	.	A	.	.	LowGQX	END=227203948	GT	./.
chr1	227204626	.	A	.	.	LowGQX	END=227204753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227210892	.	T	.	.	LowGQX	END=227211056	GT	./.
chr1	227213704	.	G	.	.	LowGQX	END=227213855	GT	./.
chr1	227216356	.	A	.	.	LowGQX	END=227216597	GT	./.
chr1	227216598	.	A	.	.	LowGQX	END=227216661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	227216662	.	T	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	227216663	.	T	.	.	LowGQX	END=227216685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	227216686	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	227216687	.	C	.	.	LowGQX	END=227216717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	227216718	.	T	.	.	LowGQX	END=227216763	GT	./.
chr1	227216764	.	T	.	.	LowGQX	END=227216774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227216775	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	227216776	.	G	.	.	LowGQX	END=227216859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227216860	.	A	.	.	LowGQX	.	GT	./.
chr1	227216861	.	C	.	.	LowGQX	END=227216913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227216914	.	C	.	.	LowGQX	END=227216953	GT	./.
chr1	227218037	.	A	.	.	LowGQX	END=227218190	GT	./.
chr1	227218997	.	A	.	.	LowGQX	END=227219062	GT	./.
chr1	227219063	.	A	.	.	LowGQX	END=227219079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227219080	.	C	.	.	LowGQX	.	GT	./.
chr1	227219081	.	T	.	.	LowGQX	END=227219095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227219096	.	C	.	.	LowGQX	.	GT	./.
chr1	227219097	.	T	.	.	LowGQX	END=227219100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227219101	.	A	.	.	LowGQX	.	GT	./.
chr1	227219102	.	A	.	.	LowGQX	END=227219187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227219188	.	T	.	.	LowGQX	.	GT	./.
chr1	227219189	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227219190	.	G	.	.	LowGQX	END=227219191	GT	./.
chr1	227219192	.	T	.	.	LowGQX	END=227219199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227219200	.	G	.	.	LowGQX	.	GT	./.
chr1	227219201	.	C	.	.	LowGQX	END=227219211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227219212	.	T	.	.	LowGQX	END=227219217	GT	./.
chr1	227221026	.	C	.	.	LowGQX	END=227221125	GT	./.
chr1	227222354	.	A	.	.	LowGQX	END=227222497	GT	./.
chr1	227223130	.	A	.	.	LowGQX	END=227223310	GT	./.
chr1	227227780	.	T	.	.	LowGQX	END=227227927	GT	./.
chr1	227227928	.	G	.	.	LowGQX	END=227227939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227235620	.	T	.	.	LowGQX	END=227235719	GT	./.
chr1	227239581	.	C	.	.	LowGQX	END=227239686	GT	./.
chr1	227247043	.	G	.	.	LowGQX	END=227247142	GT	./.
chr1	227256329	.	C	.	.	LowGQX	END=227256428	GT	./.
chr1	227257467	.	T	.	.	LowGQX	END=227257566	GT	./.
chr1	227259905	.	A	.	.	LowGQX	END=227260004	GT	./.
chr1	227261563	.	A	.	.	LowGQX	END=227261752	GT	./.
chr1	227261958	.	A	.	.	LowGQX	END=227262067	GT	./.
chr1	227268542	.	T	.	.	LowGQX	END=227268720	GT	./.
chr1	227279585	.	A	.	.	LowGQX	END=227279694	GT	./.
chr1	227288691	.	A	.	.	LowGQX	END=227288870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227288871	.	T	.	.	LowGQX	.	GT	./.
chr1	227288872	.	C	.	.	LowGQX	END=227288915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227288916	.	C	.	.	LowGQX	END=227288942	GT	./.
chr1	227300011	.	A	.	.	LowGQX	END=227300078	GT	./.
chr1	227300079	.	G	.	.	LowGQX	END=227300125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227300370	.	A	.	.	LowGQX	END=227300409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227300410	.	T	.	.	LowGQX	END=227300455	GT	./.
chr1	227300456	.	A	.	.	LowGQX	END=227300470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227300471	.	A	.	.	LowGQX	.	GT	./.
chr1	227300472	.	G	.	.	LowGQX	END=227300616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227307503	.	A	.	.	LowGQX	END=227307616	GT	./.
chr1	227307617	.	T	.	.	LowGQX	END=227307618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227307619	.	C	.	.	LowGQX	.	GT	./.
chr1	227307620	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227307621	.	G	.	.	LowGQX	.	GT	./.
chr1	227307622	.	T	.	.	LowGQX	END=227307634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227307635	.	G	.	.	LowGQX	.	GT	./.
chr1	227307636	.	A	.	.	LowGQX	END=227307639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227307640	.	T	.	.	LowGQX	.	GT	./.
chr1	227316808	.	A	.	.	LowGQX	END=227316977	GT	./.
chr1	227327275	.	A	.	.	LowGQX	END=227327445	GT	./.
chr1	227330584	.	G	.	.	LowGQX	END=227330699	GT	./.
chr1	227330700	.	G	.	.	LowGQX	END=227330734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227330735	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	227333188	.	A	.	.	LowGQX	END=227333426	GT	./.
chr1	227333427	.	C	.	.	LowGQX	END=227333440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227335058	.	A	.	.	LowGQX	END=227335194	GT	./.
chr1	227335195	.	T	.	.	LowGQX	END=227335262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227348182	.	A	.	.	LowGQX	END=227348340	GT	./.
chr1	227381485	.	A	.	.	LowGQX	END=227381637	GT	./.
chr1	227387196	.	A	.	.	LowGQX	END=227387355	GT	./.
chr1	227400769	.	A	.	.	LowGQX	END=227400775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227400776	.	T	.	.	LowGQX	END=227400928	GT	./.
chr1	227441703	.	C	.	.	LowGQX	END=227441709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227441710	.	G	.	.	LowGQX	.	GT	./.
chr1	227441711	.	T	.	.	LowGQX	END=227441718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227441719	.	C	.	.	LowGQX	END=227441860	GT	./.
chr1	227504684	.	T	.	.	LowGQX	END=227504885	GT	./.
chr1	227751305	.	T	.	.	LowGQX	END=227751389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227751390	.	G	.	.	LowGQX	END=227751460	GT	./.
chr1	227770211	.	G	.	.	LowGQX	END=227770310	GT	./.
chr1	227834194	.	C	.	.	LowGQX	END=227834371	GT	./.
chr1	227838686	.	A	.	.	LowGQX	END=227838697	GT	./.
chr1	227838698	.	C	.	.	LowGQX	END=227838703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227838704	.	A	.	.	LowGQX	.	GT	./.
chr1	227838705	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227838706	.	C	.	.	LowGQX	.	GT	./.
chr1	227838707	.	A	.	.	LowGQX	END=227838708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227838709	.	T	.	.	LowGQX	END=227838710	GT	./.
chr1	227838711	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227838712	.	G	.	.	LowGQX	END=227838713	GT	./.
chr1	227838714	.	A	.	.	LowGQX	END=227838725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227838726	.	G	.	.	LowGQX	.	GT	./.
chr1	227838727	.	C	.	.	LowGQX	END=227838728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227838729	.	T	.	.	LowGQX	.	GT	./.
chr1	227838730	.	T	.	.	LowGQX	END=227838734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227838735	.	G	.	.	LowGQX	.	GT	./.
chr1	227838736	.	G	.	.	LowGQX	END=227838738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227838739	.	C	.	.	LowGQX	.	GT	./.
chr1	227838740	.	A	.	.	LowGQX	END=227838746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227838747	.	T	.	.	LowGQX	.	GT	./.
chr1	227838748	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227838749	.	T	.	.	LowGQX	.	GT	./.
chr1	227838750	.	A	.	.	LowGQX	END=227838785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227842035	.	A	.	.	LowGQX	END=227842204	GT	./.
chr1	227842205	.	G	.	.	LowGQX	END=227842319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227842320	.	G	.	.	LowGQX	.	GT	./.
chr1	227842321	.	C	.	.	LowGQX	END=227842322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227842323	.	A	.	.	LowGQX	.	GT	./.
chr1	227842324	.	T	.	.	LowGQX	END=227842331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227842332	.	T	.	.	LowGQX	END=227842333	GT	./.
chr1	227842334	.	A	.	.	LowGQX	END=227842341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227842342	.	G	.	.	LowGQX	.	GT	./.
chr1	227842343	.	G	.	.	LowGQX	END=227842348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227842349	.	T	.	.	LowGQX	END=227842495	GT	./.
chr1	227842496	.	A	.	.	LowGQX	END=227842645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:50
chr1	227842646	.	C	.	.	LowGQX	END=227842682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:44
chr1	227842683	.	A	.	.	LowGQX;LowMQ	END=227842692	GT	./.
chr1	227842693	.	A	.	.	LowGQX	END=227843480	GT	./.
chr1	227843481	.	T	.	.	LowGQX	END=227843531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	227920091	.	T	.	.	LowGQX	END=227920379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227920580	.	A	.	.	LowGQX	END=227920594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227920595	.	T	.	.	LowGQX	.	GT	./.
chr1	227920596	.	G	.	.	LowGQX	END=227920612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227920613	.	T	.	.	LowGQX	END=227920667	GT	./.
chr1	227920668	.	G	.	.	LowGQX	END=227920702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227920703	.	T	.	.	LowGQX	.	GT	./.
chr1	227920704	.	T	.	.	LowGQX	END=227920730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227921043	.	G	.	.	LowGQX	END=227921452	GT	./.
chr1	227921606	.	A	.	.	LowGQX	END=227921735	GT	./.
chr1	227922350	.	A	.	.	LowGQX	END=227922519	GT	./.
chr1	227922711	.	A	.	.	LowGQX	.	GT	./.
chr1	227922712	.	C	.	.	LowGQX	END=227922718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227922719	.	T	.	.	LowGQX	.	GT	./.
chr1	227922720	.	C	.	.	LowGQX	END=227922757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227922758	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	227922759	.	C	.	.	LowGQX	END=227922807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	227922808	.	A	.	.	LowGQX	.	GT	./.
chr1	227922809	.	C	.	.	LowGQX	END=227922819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	227922820	.	T	.	.	LowGQX	.	GT	./.
chr1	227922821	.	T	.	.	LowGQX	END=227922832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	227922833	.	A	.	.	LowGQX	.	GT	./.
chr1	227922834	.	G	.	.	LowGQX	END=227922859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227922860	.	A	.	.	LowGQX	.	GT	./.
chr1	227922861	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227922862	.	G	.	.	LowGQX	.	GT	./.
chr1	227922863	.	C	.	.	LowGQX	END=227922890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227922891	.	G	.	.	LowGQX	.	GT	./.
chr1	227922892	.	C	.	.	LowGQX	END=227922899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227922900	.	C	.	.	LowGQX	END=227923202	GT	./.
chr1	227935391	.	A	.	.	LowGQX	END=227935936	GT	./.
chr1	227946694	.	A	.	.	LowGQX	END=227946758	GT	./.
chr1	227946759	.	A	.	.	LowGQX	END=227946900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	227946901	.	T	.	.	LowGQX	END=227947188	GT	./.
chr1	227954658	.	A	.	.	LowGQX	END=227954677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227954678	.	G	.	.	LowGQX	END=227954786	GT	./.
chr1	227963486	.	G	.	.	LowGQX	END=227963537	GT	./.
chr1	227963538	.	T	.	.	LowGQX	END=227963585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	227968226	.	A	.	.	LowGQX	END=227968376	GT	./.
chr1	228003416	.	T	.	.	LowGQX	END=228003417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228003418	.	A	.	.	LowGQX	.	GT	./.
chr1	228003419	.	T	.	.	LowGQX	END=228003535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228003536	.	A	.	.	LowGQX	.	GT	./.
chr1	228003537	.	C	.	.	LowGQX	END=228003567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228003789	.	A	.	.	LowGQX	END=228003819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228003820	.	A	.	.	LowGQX	.	GT	./.
chr1	228003821	.	T	.	.	LowGQX	END=228003844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228003845	.	A	.	.	LowGQX	.	GT	./.
chr1	228003846	.	G	.	.	LowGQX	END=228003955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228004908	.	A	.	.	LowGQX	END=228005183	GT	./.
chr1	228033169	.	A	.	.	LowGQX	END=228033315	GT	./.
chr1	228033653	.	A	.	.	LowGQX	END=228033911	GT	./.
chr1	228109217	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	228109218	.	C	.	.	LowGQX	END=228109220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228109221	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	228109222	.	G	.	.	LowGQX	END=228109241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228109242	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	228109243	.	C	.	.	LowGQX	END=228109307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228109308	.	T	.	.	LowGQX	END=228109703	GT	./.
chr1	228111837	.	G	.	.	LowGQX	END=228112103	GT	./.
chr1	228112962	.	A	.	.	LowGQX	.	GT	./.
chr1	228112963	.	C	.	.	LowGQX	END=228112994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228112995	.	C	.	.	LowGQX	.	GT	./.
chr1	228112996	.	T	.	.	LowGQX	END=228113020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228113021	.	A	.	.	LowGQX	END=228113022	GT	./.
chr1	228113023	.	C	.	.	LowGQX	END=228113031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228113032	.	A	.	.	LowGQX	.	GT	./.
chr1	228113033	.	A	.	.	LowGQX	END=228113048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228113049	.	A	.	.	LowGQX	.	GT	./.
chr1	228113050	.	C	.	.	LowGQX	END=228113115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228113116	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	228113117	.	T	.	.	LowGQX	END=228113162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	228113163	.	A	G	3.07	LowGQX;LowQD;SB	BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.02;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.11:30,0,39:60:3:0.333
chr1	228113164	.	G	.	.	LowGQX	END=228113217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228113218	.	A	.	.	LowGQX	END=228113222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	228135441	.	C	.	.	LowGQX	END=228135591	GT	./.
chr1	228194758	.	C	.	.	LowGQX	END=228194915	GT	./.
chr1	228210366	.	A	.	.	PASS	END=228210388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	228210389	.	G	.	.	PASS	END=228210408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	228210409	.	A	.	.	PASS	END=228210429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	228210430	.	T	.	.	PASS	END=228210455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	228210456	.	C	.	.	PASS	END=228210515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	228210516	.	A	.	.	PASS	END=228210537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:75:60
chr1	228210538	.	T	.	.	PASS	END=228210539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:69:60
chr1	228210540	.	C	.	.	PASS	END=228210551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	228210552	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:60:60
chr1	228210553	.	G	.	.	PASS	END=228210575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	228210576	.	A	.	.	PASS	END=228210590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	228210591	.	G	.	.	PASS	END=228210592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	228210593	.	G	.	.	PASS	END=228210595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	228210596	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:45:60
chr1	228210597	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:63:60
chr1	228210598	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	228210599	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:63:60
chr1	228210600	.	C	.	.	PASS	END=228210601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr1	228210602	.	G	.	.	PASS	END=228210605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	228210606	.	A	.	.	PASS	END=228210607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	228210608	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:39:60
chr1	228210609	.	G	.	.	PASS	END=228210611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	228238355	.	A	.	.	LowGQX	END=228238522	GT	./.
chr1	228238523	.	G	.	.	LowGQX	END=228238624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228246685	.	A	.	.	PASS	END=228246696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	228246697	.	G	.	.	PASS	END=228246728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	228246729	.	C	.	.	PASS	END=228246748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	228246749	.	G	.	.	PASS	END=228246834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	228246835	.	T	.	.	PASS	END=228246871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	228246872	.	C	.	.	PASS	END=228246895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	228246896	.	C	.	.	PASS	END=228246900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	228246901	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:60:60
chr1	228246902	.	G	.	.	PASS	END=228246921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	228246922	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:57:60
chr1	228246923	.	C	.	.	PASS	END=228246928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:81:60
chr1	228246929	.	C	.	.	PASS	END=228246935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	228246936	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:60
chr1	228246937	.	C	.	.	PASS	END=228246945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	228246946	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	228246947	.	C	.	.	PASS	END=228246963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	228246964	.	A	.	.	PASS	END=228246966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	228246967	.	C	.	.	PASS	END=228246975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	228246976	.	T	.	.	PASS	END=228246978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	228246979	.	G	.	.	PASS	END=228247002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	228247003	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	228247004	.	C	.	.	PASS	END=228247005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	228247006	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:2:60
chr1	228247007	.	C	.	.	PASS	END=228247009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	228247010	.	G	.	.	LowGQX	END=228247011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	228247012	.	A	.	.	PASS	END=228247025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	228247026	.	T	.	.	LowGQX	END=228247029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr1	228247030	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	228247031	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	228247032	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	228247033	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	228247034	.	G	.	.	PASS	END=228247037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	228247038	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	228247039	.	G	.	.	PASS	END=228247040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	228247041	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	228247042	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	228247043	.	C	.	.	LowGQX	END=228247055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	228247056	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	228247057	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr1	228247058	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	228247059	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	228247060	.	C	.	.	LowGQX	END=228247071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	228247072	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	228247073	.	G	.	.	LowGQX	END=228247079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	228247080	.	G	.	.	LowGQX	END=228247082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	228247083	.	A	.	.	LowGQX	END=228247086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	228247087	.	G	.	.	LowGQX	END=228247088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	228247089	.	C	.	.	LowGQX	END=228247097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	228247098	.	T	.	.	LowGQX	END=228247100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	228247101	.	C	.	.	LowGQX	END=228247105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	228247106	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	228247107	.	T	.	.	LowGQX	END=228247110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	228247111	.	G	.	.	LowGQX	END=228247112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	228247113	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	228247114	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	228247115	.	C	.	.	LowGQX	END=228247117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	228247118	.	C	.	.	LowGQX	END=228247136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	228247137	.	C	.	.	LowGQX	END=228247138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	228247139	.	C	.	.	LowGQX	END=228247146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	228247147	.	A	.	.	LowGQX	END=228247149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	228247150	.	T	.	.	LowGQX	END=228247151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	228247152	.	C	.	.	LowGQX	END=228247168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	228247902	.	G	.	.	LowGQX	END=228247905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228247906	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	228247907	.	C	.	.	LowGQX	END=228247909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228247910	.	G	.	.	LowGQX	END=228247911	GT	./.
chr1	228247912	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228247913	.	T	.	.	LowGQX	END=228247914	GT	./.
chr1	228247915	.	C	.	.	LowGQX	END=228247918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228247919	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	228247920	.	C	.	.	LowGQX	END=228247931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228247932	.	C	.	.	LowGQX	.	GT	./.
chr1	228247933	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	228247934	.	C	.	.	LowGQX	END=228247939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228247940	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	228247941	.	C	.	.	LowGQX	END=228247943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228247944	.	C	.	.	LowGQX	.	GT	./.
chr1	228247945	.	T	.	.	LowGQX	END=228247974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228247975	.	A	.	.	LowGQX	.	GT	./.
chr1	228247976	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	228247977	.	C	.	.	LowGQX	.	GT	./.
chr1	228247978	.	C	.	.	LowGQX	END=228247987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228247988	.	G	.	.	LowGQX	END=228247989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	228247990	.	T	.	.	LowGQX	END=228247998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	228247999	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	228248000	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	228248001	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	228248002	.	A	.	.	LowGQX	END=228248005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	228284814	.	G	.	.	LowGQX	END=228284891	GT	./.
chr1	228284892	.	A	.	.	LowGQX	END=228284905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228284906	.	A	.	.	LowGQX	.	GT	./.
chr1	228284907	.	C	.	.	LowGQX	END=228284929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228284930	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	228284931	.	T	.	.	LowGQX	END=228284935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228284936	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	228284937	.	A	.	.	LowGQX	END=228284965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228285041	.	A	.	.	LowGQX	END=228285155	GT	./.
chr1	228285240	.	T	.	.	LowGQX	END=228285418	GT	./.
chr1	228285551	.	A	.	.	LowGQX	END=228285716	GT	./.
chr1	228288830	.	C	.	.	LowGQX	END=228288957	GT	./.
chr1	228289038	.	A	.	.	LowGQX	END=228289176	GT	./.
chr1	228289774	.	G	.	.	LowGQX	END=228289873	GT	./.
chr1	228289998	.	G	.	.	LowGQX	END=228290097	GT	./.
chr1	228290171	.	G	.	.	LowGQX	END=228290416	GT	./.
chr1	228290598	.	A	.	.	LowGQX	END=228290752	GT	./.
chr1	228290832	.	C	.	.	LowGQX	END=228290931	GT	./.
chr1	228294459	.	G	.	.	LowGQX	END=228294621	GT	./.
chr1	228295297	.	T	.	.	LowGQX	END=228295466	GT	./.
chr1	228295467	.	G	.	.	LowGQX	END=228295539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228295540	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	228295541	.	G	.	.	LowGQX	END=228295617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228295618	.	A	.	.	LowGQX	END=228295636	GT	./.
chr1	228295677	.	C	.	.	LowGQX	END=228295743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228295744	.	T	.	.	LowGQX	.	GT	./.
chr1	228295745	.	C	.	.	LowGQX	END=228295785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228295899	.	G	.	.	LowGQX	END=228295998	GT	./.
chr1	228327924	.	A	.	.	LowGQX	END=228327972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228327973	.	T	.	.	LowGQX	END=228328083	GT	./.
chr1	228329335	.	A	.	.	LowGQX	END=228329530	GT	./.
chr1	228333193	.	C	.	.	LowGQX	END=228333213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228333214	.	A	.	.	LowGQX	END=228333350	GT	./.
chr1	228333698	.	C	.	.	LowGQX	END=228333797	GT	./.
chr1	228334541	.	A	.	.	LowGQX	END=228334542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228334543	.	A	.	.	LowGQX	END=228334544	GT	./.
chr1	228334545	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228334546	.	A	.	.	LowGQX	.	GT	./.
chr1	228334547	.	C	.	.	LowGQX	END=228334556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228334557	.	A	.	.	LowGQX	.	GT	./.
chr1	228334558	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228334559	.	C	.	.	LowGQX	.	GT	./.
chr1	228334560	.	A	.	.	LowGQX	END=228334568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228334569	.	A	.	.	LowGQX	.	GT	./.
chr1	228334570	.	T	.	.	LowGQX	END=228334582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228334583	.	A	.	.	LowGQX	.	GT	./.
chr1	228334584	.	G	.	.	LowGQX	END=228334590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228334591	.	G	.	.	LowGQX	END=228334593	GT	./.
chr1	228334594	.	A	.	.	LowGQX	END=228334596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228334597	.	T	.	.	LowGQX	END=228334598	GT	./.
chr1	228334599	.	A	.	.	LowGQX	END=228334602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228334603	.	A	.	.	LowGQX	.	GT	./.
chr1	228334604	.	G	.	.	LowGQX	END=228334613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228334614	.	T	.	.	LowGQX	.	GT	./.
chr1	228334615	.	T	.	.	LowGQX	END=228334628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228334629	.	T	.	.	LowGQX	.	GT	./.
chr1	228334630	.	A	.	.	LowGQX	END=228334632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228334633	.	G	.	.	LowGQX	.	GT	./.
chr1	228334634	.	C	.	.	LowGQX	END=228334641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228335105	.	A	.	.	LowGQX	END=228335247	GT	./.
chr1	228335309	.	T	.	.	LowGQX	END=228335408	GT	./.
chr1	228335912	.	C	.	.	LowGQX	END=228335979	GT	./.
chr1	228335980	.	C	.	.	LowGQX	END=228336011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228336070	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228336071	.	G	.	.	LowGQX	.	GT	./.
chr1	228336072	.	G	.	.	LowGQX	END=228336086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228336087	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	228336088	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228336089	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	228336090	.	T	.	.	LowGQX	END=228336112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228336113	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	228336114	.	G	.	.	LowGQX	END=228336119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228336120	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	228336121	.	C	.	.	LowGQX	END=228336166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228336167	.	T	.	.	LowGQX	.	GT	./.
chr1	228336168	.	C	.	.	LowGQX	END=228336221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228336222	.	T	.	.	LowGQX	END=228336240	GT	./.
chr1	228336364	.	A	.	.	LowGQX	END=228336553	GT	./.
chr1	228345409	.	G	.	.	PASS	END=228345420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr1	228345421	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:42:60
chr1	228345422	.	C	.	.	PASS	END=228345431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:58
chr1	228345432	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:66:57
chr1	228345433	.	C	.	.	PASS	END=228345436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:57
chr1	228345437	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:18:56
chr1	228345438	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:81:56
chr1	228345439	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:33:56
chr1	228345440	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:45:56
chr1	228345441	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:60:56
chr1	228345442	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	228345443	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	228345444	.	C	.	.	LowGQX	END=228345445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	228345446	.	G	C	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=1.9993;MQ=60;MQ0=0;MQRankSum=-0.727;QD=0.79;ReadPosRankSum=0.727;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,1:4:30.29:30,0,66:60:3:0.250
chr1	228345447	.	C	.	.	LowGQX	END=228345448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	228345449	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	228345450	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:60
chr1	228345451	.	C	.	.	LowGQX	END=228345454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	228345455	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	228345456	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	228345457	.	C	.	.	PASS	END=228345466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	228345467	.	A	.	.	PASS	END=228345471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	228345472	.	A	.	.	PASS	END=228345483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	228345484	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:54:60
chr1	228345485	.	T	.	.	PASS	END=228345503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr1	228345504	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:99:60
chr1	228345505	.	A	.	.	PASS	END=228345514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	228345515	.	A	.	.	PASS	END=228345533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	228345534	.	G	.	.	PASS	END=228345546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	228345547	.	G	.	.	PASS	END=228345567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	228345568	.	G	.	.	PASS	END=228345591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	228345592	.	G	.	.	PASS	END=228345627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:291:99:60
chr1	228345628	.	A	.	.	PASS	END=228345701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:310:99:60
chr1	228345702	.	C	.	.	PASS	END=228345734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr1	228345735	.	C	.	.	PASS	END=228345746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	228345747	.	C	.	.	PASS	END=228345752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	228345753	.	C	.	.	PASS	END=228345763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	228345764	.	T	.	.	PASS	END=228345769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	228345770	.	G	.	.	PASS	END=228345784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	228345785	.	A	.	.	PASS	END=228345797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	228345798	.	C	.	.	PASS	END=228345801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:96:60
chr1	228345802	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:63:60
chr1	228345803	.	G	.	.	PASS	END=228345807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	228345808	.	C	.	.	PASS	END=228345817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	228345818	.	C	.	.	PASS	END=228345821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	228345822	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:15:60
chr1	228345823	.	C	.	.	PASS	END=228345824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	228345825	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	228345826	.	G	.	.	PASS	END=228345827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	228345828	.	G	.	.	LowGQX	END=228345831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	228345832	.	C	.	.	LowGQX	END=228345838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	228345839	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	228345840	.	C	.	.	LowGQX	END=228345845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr1	228345846	.	G	.	.	PASS	END=228345848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	228345849	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:4:60
chr1	228345850	.	C	.	.	PASS	END=228345853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	228345854	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	228345855	.	C	.	.	PASS	END=228345863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	228345864	.	G	.	.	PASS	END=228345868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	228345869	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:3:60
chr1	228345870	.	G	.	.	PASS	END=228345875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	228345876	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:15:60
chr1	228345877	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:54:60
chr1	228345878	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:33:60
chr1	228345879	.	C	.	.	PASS	END=228345888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	228345889	.	G	.	.	PASS	END=228345894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	228345895	.	C	.	.	PASS	END=228345897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	228345898	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:33:60
chr1	228345899	.	T	.	.	PASS	END=228345907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	228345908	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:66:60
chr1	228345909	.	G	.	.	PASS	END=228345913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	228345914	.	A	.	.	PASS	END=228345918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	228345919	.	G	.	.	PASS	END=228345928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	228345929	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:63:60
chr1	228345930	.	G	.	.	PASS	END=228345931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr1	228345932	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:66:60
chr1	228345933	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:99:60
chr1	228345934	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr1	228345935	.	C	.	.	PASS	END=228345941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	228345942	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:60:60
chr1	228345943	.	G	.	.	PASS	END=228345946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	228345947	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:43:1:60
chr1	228345948	.	G	.	.	PASS	END=228345961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:60
chr1	228345962	.	A	.	.	PASS	END=228345963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:66:60
chr1	228345964	.	G	.	.	PASS	END=228345981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr1	228345982	.	G	.	.	PASS	END=228346001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:96:60
chr1	228346002	.	G	.	.	PASS	END=228346050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	228346051	.	C	.	.	PASS	END=228346080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	228346081	.	G	.	.	PASS	END=228346099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	228346100	.	T	.	.	PASS	END=228346157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr1	228346158	.	G	.	.	PASS	END=228346196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:265:99:60
chr1	228346197	.	C	.	.	PASS	END=228346280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:338:99:60
chr1	228346281	.	C	.	.	PASS	END=228346312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:257:99:60
chr1	228346313	.	A	.	.	PASS	END=228346335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	228346336	.	A	.	.	PASS	END=228346347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	228346348	.	G	.	.	PASS	END=228346353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	228346354	.	C	.	.	PASS	END=228346359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	228346360	.	C	.	.	PASS	END=228346369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:99:60
chr1	228346370	.	C	.	.	PASS	END=228346377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	228346378	.	T	.	.	PASS	END=228346383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	228346384	.	C	.	.	LowGQX	END=228346389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	228346390	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	228346391	.	C	.	.	LowGQX	END=228346396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	228346397	.	C	.	.	LowGQX	END=228346400	GT	./.
chr1	228346401	.	G	.	.	LowGQX	END=228346411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	228346412	.	G	.	.	LowGQX	END=228346434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	228346435	.	G	.	.	LowGQX	END=228346438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	228346439	.	T	.	51.06	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:21.07:60:21
chr1	228346440	.	G	.	.	LowGQX	END=228346453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	228346454	.	A	.	.	PASS	END=228346458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	228346459	.	A	.	.	LowGQX	END=228346460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:27:60
chr1	228346461	.	C	.	.	PASS	END=228346468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	228346469	.	T	.	60.09	PASS	DP=16;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:12:16:30.10:60:30
chr1	228346470	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:33:60
chr1	228346471	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:1:60
chr1	228346472	.	G	.	.	PASS	END=228346477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:60
chr1	228346478	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:2:60
chr1	228346479	.	C	.	.	PASS	END=228346480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:33:60
chr1	228346481	.	A	.	57.08	LowGQX	DP=21;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:16:21:27.08:60:27
chr1	228346482	.	G	.	.	PASS	END=228346487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:60
chr1	228346488	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:21:60
chr1	228346489	.	C	.	.	PASS	END=228346497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:30:60
chr1	228346498	.	G	.	.	PASS	END=228346521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:60
chr1	228346522	.	C	.	.	PASS	END=228346523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:42:60
chr1	228346524	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:0:60
chr1	228346525	.	C	.	.	PASS	END=228346584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:60
chr1	228346585	.	G	.	.	PASS	END=228346599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	228346600	.	T	.	.	PASS	END=228346607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	228346608	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:2:60
chr1	228346609	.	C	.	.	PASS	END=228346610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	228346611	.	C	.	.	PASS	END=228346619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	228346620	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	228346621	.	G	.	.	PASS	END=228346645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	228346646	.	G	.	.	PASS	END=228346664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	228346665	.	T	.	.	PASS	END=228346675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	228346676	.	A	.	.	PASS	END=228346679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:54:60
chr1	228346680	.	C	.	.	PASS	END=228346689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	228346690	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:54:60
chr1	228346691	.	C	.	.	PASS	END=228346713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	228346714	.	C	.	.	PASS	END=228346789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:78:60
chr1	228346790	.	T	.	.	PASS	END=228346799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:72:60
chr1	228346800	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:42:60
chr1	228346801	.	G	.	.	PASS	END=228346816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	228346817	.	G	.	.	PASS	END=228346826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr1	228346827	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:42:60
chr1	228346828	.	C	.	.	PASS	END=228346830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	228351817	.	A	.	.	LowGQX	END=228351981	GT	./.
chr1	228351982	.	G	.	.	LowGQX	END=228352108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228352109	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	228352110	.	A	.	.	LowGQX	END=228352150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228353513	.	C	.	.	LowGQX	END=228353860	GT	./.
chr1	228362391	.	A	.	.	LowGQX	END=228362732	GT	./.
chr1	228362821	.	A	.	.	LowGQX	END=228362860	GT	./.
chr1	228362861	.	G	.	.	LowGQX	END=228362867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228362868	.	C	.	.	LowGQX	.	GT	./.
chr1	228362869	.	C	.	.	LowGQX	END=228362881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228362882	.	C	.	.	LowGQX	.	GT	./.
chr1	228362883	.	T	.	.	LowGQX	END=228362884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228362885	.	G	.	.	LowGQX	END=228362886	GT	./.
chr1	228362887	.	C	.	.	LowGQX	END=228362891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228362892	.	T	.	.	LowGQX	.	GT	./.
chr1	228362893	.	G	.	.	LowGQX	END=228362904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228362905	.	C	.	.	LowGQX	END=228362906	GT	./.
chr1	228362907	.	T	.	.	LowGQX	END=228362932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228362933	.	G	.	.	LowGQX	.	GT	./.
chr1	228362934	.	A	.	.	LowGQX	END=228362935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228362936	.	C	.	.	LowGQX	.	GT	./.
chr1	228362937	.	T	.	.	LowGQX	END=228362968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228362969	.	C	.	.	LowGQX	.	GT	./.
chr1	228362970	.	G	.	.	LowGQX	END=228362989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228362990	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	228362991	.	G	.	.	LowGQX	END=228362995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228362996	.	T	.	.	LowGQX	.	GT	./.
chr1	228362997	.	T	.	.	LowGQX	END=228363011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228363012	.	C	.	.	LowGQX	END=228363013	GT	./.
chr1	228363014	.	A	.	.	LowGQX	END=228363023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228363024	.	C	.	.	LowGQX	END=228363025	GT	./.
chr1	228363026	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228363027	.	C	.	.	LowGQX	.	GT	./.
chr1	228363028	.	T	.	.	LowGQX	END=228363029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228363030	.	G	.	.	LowGQX	.	GT	./.
chr1	228363031	.	T	.	.	LowGQX	END=228363061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228363062	.	G	.	.	LowGQX	END=228363216	GT	./.
chr1	228391753	.	C	.	.	LowGQX	END=228391856	GT	./.
chr1	228393010	.	A	.	.	LowGQX	END=228393169	GT	./.
chr1	228399484	.	C	.	.	PASS	END=228399498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	228399499	.	G	.	.	PASS	END=228399542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	228399543	.	T	.	.	PASS	END=228399570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	228399571	.	C	.	.	PASS	END=228399598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	228399599	.	C	.	.	PASS	END=228399658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	228399659	.	G	.	.	PASS	END=228399714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	228399715	.	T	.	.	PASS	END=228399765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	228399766	.	T	C	2088.93	PASS	BaseQRankSum=3.603;DP=228;Dels=0.00;FS=11.938;HRun=1;HaplotypeScore=21.8739;MQ=60;MQ0=0;MQRankSum=-0.596;QD=9.16;ReadPosRankSum=-1.233;SB=-865.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:140,86:228:99:2119,0,3231:60:99:0.381
chr1	228399767	.	G	.	.	PASS	END=228399837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	228399838	.	C	.	.	PASS	END=228399863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	228399864	.	C	.	.	PASS	END=228399910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	228399911	.	T	.	.	PASS	END=228399931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	228399932	.	C	.	.	PASS	END=228399945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	228399946	.	C	.	.	PASS	END=228399962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	228399963	.	T	.	.	PASS	END=228399968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	228399969	.	A	.	.	PASS	END=228399977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	228399978	.	A	.	.	PASS	END=228399987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	228399988	.	G	.	.	PASS	END=228399997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	228399998	.	C	.	.	PASS	END=228399999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	228400000	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	228400001	.	G	.	.	PASS	END=228400002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	228400003	.	G	.	.	LowGQX	END=228400004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	228400005	.	C	.	.	LowGQX	END=228400020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	228400021	.	C	.	4.69	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.01:60:0
chr1	228400022	.	G	.	.	LowGQX	END=228400097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228400098	.	C	.	.	LowGQX	END=228400102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	228400103	.	G	.	.	LowGQX	END=228400106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	228400107	.	C	.	.	LowGQX	END=228400117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	228400118	.	C	.	.	LowGQX	END=228400124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	228400125	.	C	.	.	PASS	END=228400127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	228400128	.	C	.	.	PASS	END=228400138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	228400139	.	C	.	.	PASS	END=228400148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	228400149	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:48:60
chr1	228400150	.	C	.	.	PASS	END=228400159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	228400160	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:39:60
chr1	228400161	.	G	.	.	PASS	END=228400166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr1	228400167	.	A	.	.	PASS	END=228400176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	228400177	.	C	.	.	PASS	END=228400197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	228400198	.	A	.	.	PASS	END=228400218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	228400219	.	C	.	.	PASS	END=228400241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	228400242	.	A	.	.	PASS	END=228400307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	228400308	.	G	.	.	PASS	END=228400369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	228400370	.	C	.	.	PASS	END=228400401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	228400402	.	C	.	.	PASS	END=228400431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	228400432	.	C	.	.	PASS	END=228400457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	228400458	.	T	.	.	PASS	END=228400471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	228400472	.	G	.	.	PASS	END=228400490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	228400491	.	G	.	.	PASS	END=228400500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	228400501	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:60
chr1	228400502	.	C	.	.	PASS	END=228400507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	228400508	.	T	.	.	PASS	END=228400520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:75:60
chr1	228400521	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:69:60
chr1	228400522	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:39:60
chr1	228400523	.	G	.	.	PASS	END=228400531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	228400532	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:42:60
chr1	228400533	.	C	.	.	PASS	END=228400545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	228400546	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:24:60
chr1	228400547	.	G	.	.	PASS	END=228400548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	228400549	.	T	.	.	PASS	END=228400556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	228400557	.	T	.	.	PASS	END=228400558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	228400559	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:27:60
chr1	228400560	.	C	.	.	PASS	END=228400576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	228400577	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:45:60
chr1	228400578	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:21:60
chr1	228400579	.	C	.	.	PASS	END=228400580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	228400581	.	T	.	.	PASS	END=228400582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	228400583	.	G	.	.	PASS	END=228400592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	228400593	.	T	.	.	PASS	END=228400594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	228400595	.	G	.	.	PASS	END=228400599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	228400600	.	T	.	.	PASS	END=228400606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	228400607	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr1	228400608	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:48:60
chr1	228401082	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	228401083	.	C	.	.	LowGQX	.	GT	./.
chr1	228401084	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228401085	.	C	.	.	LowGQX	.	GT	./.
chr1	228401086	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228401087	.	C	.	.	LowGQX	END=228401089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	228401090	.	T	.	.	LowGQX	END=228401091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	228401092	.	G	.	.	LowGQX	END=228401095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	228401096	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	228401097	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	228401098	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	228401099	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr1	228401100	.	C	.	.	PASS	END=228401101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	228401102	.	C	.	.	PASS	END=228401106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	228401107	.	G	.	.	PASS	END=228401109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	228401110	.	C	.	.	PASS	END=228401121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	228401122	.	C	.	.	PASS	END=228401129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	228401130	.	C	.	.	PASS	END=228401151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	228401152	.	T	.	.	PASS	END=228401179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	228401180	.	G	.	.	PASS	END=228401210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:97:60
chr1	228401211	.	T	.	.	PASS	END=228401312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	228401313	.	G	.	.	PASS	END=228401333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	228401334	.	T	.	.	PASS	END=228401361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr1	228401362	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:69:60
chr1	228401363	.	T	.	.	PASS	END=228401378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	228401379	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:48:60
chr1	228401380	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:12:60
chr1	228401381	.	A	.	.	PASS	END=228401387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	228401388	.	C	.	.	PASS	END=228401389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr1	228401390	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:48:60
chr1	228401391	.	T	.	.	PASS	END=228401393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr1	228401394	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:2:60
chr1	228401395	.	G	.	.	PASS	END=228401398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	228401399	.	C	.	.	PASS	END=228401400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	228401401	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:10:60
chr1	228401402	.	G	.	.	PASS	END=228401409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	228401410	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	228401411	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:39:60
chr1	228401864	.	C	.	.	PASS	END=228401922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:87:60
chr1	228401923	.	A	.	.	PASS	END=228401946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	228401947	.	T	.	.	PASS	END=228402000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	228402001	.	C	.	.	PASS	END=228402046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	228402047	.	A	G	2169.72	PASS	BaseQRankSum=0.902;DP=214;Dels=0.00;FS=3.238;HRun=0;HaplotypeScore=39.9181;MQ=60;MQ0=0;MQRankSum=0.947;QD=10.14;ReadPosRankSum=-1.492;SB=-1287.09	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:123,91:214:99:2200,0,3151:60:99:0.425
chr1	228402048	.	A	.	.	PASS	END=228402120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	228402121	.	A	G	2145.37	PASS	BaseQRankSum=0.472;DP=184;Dels=0.00;FS=4.675;HRun=1;HaplotypeScore=17.0973;MQ=60;MQ0=0;MQRankSum=0.710;QD=11.66;ReadPosRankSum=2.321;SB=-1051.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:92,92:184:99:2175,0,2613:60:99:0.500
chr1	228402122	.	G	.	.	PASS	END=228402135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	228402490	.	G	.	.	PASS	END=228402507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:95:60
chr1	228402508	.	C	T	1038.75	PASS	BaseQRankSum=-0.107;DP=53;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=10.5090;MQ=60;MQ0=0;MQRankSum=0.068;QD=19.60;ReadPosRankSum=1.037;SB=-105.91	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:16,37:53:99:1069,0,414:60:99:0.698
chr1	228402509	.	T	.	.	PASS	END=228402536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:77:60
chr1	228402537	.	G	.	.	PASS	END=228402563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	228402564	.	C	.	.	PASS	END=228402597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	228402598	.	G	.	.	PASS	END=228402699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	228402700	.	G	.	.	PASS	END=228402752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	228402753	.	C	.	.	PASS	END=228402788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	228402789	.	T	.	.	PASS	END=228402799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	228403263	.	G	.	.	PASS	END=228403298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	228403299	.	G	.	.	PASS	END=228403328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	228403329	.	T	.	.	PASS	END=228403405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	228403406	.	T	.	.	PASS	END=228403412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	228403413	.	C	.	.	PASS	END=228403451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	228403452	.	G	.	.	PASS	END=228403479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	228403480	.	T	.	.	PASS	END=228403517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	228403518	.	A	.	.	PASS	END=228403524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	228403525	.	T	.	.	PASS	END=228403526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:72:60
chr1	228403527	.	C	.	.	PASS	END=228403530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	228404121	.	G	.	.	PASS	END=228404162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr1	228404163	.	G	.	.	PASS	END=228404195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	228404196	.	G	.	.	PASS	END=228404243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	228404244	.	C	.	.	PASS	END=228404299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	228404300	.	C	.	.	PASS	END=228404344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	228404345	.	A	.	.	PASS	END=228404357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	228404358	.	T	.	.	PASS	END=228404366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:90:60
chr1	228404367	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:58:60
chr1	228404368	.	G	.	.	PASS	END=228404391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	228404392	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:63:60
chr1	228404393	.	C	.	.	PASS	END=228404403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	228404713	.	G	.	.	PASS	END=228404799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	228404800	.	T	.	.	PASS	END=228404851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	228404852	.	A	.	.	PASS	END=228404914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	228404915	.	T	.	.	PASS	END=228404950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:93:60
chr1	228404951	.	T	.	.	PASS	END=228404975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:84:60
chr1	228404976	.	G	.	.	PASS	END=228404989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	228412159	.	G	.	.	PASS	END=228412209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	228412210	.	G	.	.	PASS	END=228412226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	228412227	.	T	C	647.88	PASS	BaseQRankSum=0.185;DP=89;Dels=0.00;FS=13.071;HRun=0;HaplotypeScore=7.6276;MQ=60;MQ0=0;MQRankSum=-0.452;QD=7.28;ReadPosRankSum=1.632;SB=-423.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:58,31:89:99:678,0,1578:60:99:0.348
chr1	228412228	.	G	A	562.12	PASS	BaseQRankSum=0.183;DP=88;Dels=0.00;FS=8.588;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=0.183;QD=6.39;ReadPosRankSum=1.826;SB=-326.34	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:57,30:88:99:592,0,1615:60:99:0.345
chr1	228412229	.	C	.	.	PASS	END=228412248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	228412249	.	G	.	.	PASS	END=228412307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	228412308	.	G	A	1130.27	PASS	BaseQRankSum=2.801;DP=108;Dels=0.00;FS=0.734;HRun=3;HaplotypeScore=2.8935;MQ=60;MQ0=0;MQRankSum=0.130;QD=10.47;ReadPosRankSum=-1.599;SB=-693.80	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:61,47:108:99:1160,0,1618:60:99:0.435
chr1	228412309	.	A	.	.	PASS	END=228412389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	228412390	.	T	.	.	PASS	END=228412405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	228412406	.	A	.	.	PASS	END=228412435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	228430883	.	G	.	.	PASS	END=228430906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	228430907	.	G	.	.	PASS	END=228430966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	228430967	.	G	.	.	PASS	END=228431023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	228431024	.	T	.	.	PASS	END=228431062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	228431063	.	C	.	.	PASS	END=228431094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	228431095	.	A	G	1076.10	PASS	BaseQRankSum=-0.017;DP=88;Dels=0.00;FS=5.064;HRun=1;HaplotypeScore=9.5639;MQ=60;MQ0=0;MQRankSum=0.042;QD=12.23;ReadPosRankSum=-1.836;SB=-398.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:43,45:88:99:1106,0,1086:60:99:0.511
chr1	228431096	.	G	.	.	PASS	END=228431113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	228431114	.	T	.	.	PASS	END=228431134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:79:60
chr1	228431135	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:99:60
chr1	228431136	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:72:60
chr1	228431137	.	C	.	.	PASS	END=228431159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	228431996	.	G	.	.	PASS	END=228432028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	228432029	.	G	.	.	PASS	END=228432052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	228432053	.	G	.	.	PASS	END=228432078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	228432079	.	T	.	.	PASS	END=228432169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	228432170	.	T	.	.	PASS	END=228432182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	228432183	.	T	.	.	PASS	END=228432212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	228432213	.	C	.	.	PASS	END=228432226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	228432227	.	T	.	.	PASS	END=228432240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	228432241	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:45:60
chr1	228432242	.	C	.	.	PASS	END=228432258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	228432259	.	C	.	.	PASS	END=228432272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	228433113	.	G	.	.	PASS	END=228433114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	228433115	.	G	.	.	PASS	END=228433136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	228433137	.	G	.	.	PASS	END=228433174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	228433175	.	G	.	.	PASS	END=228433191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	228433192	.	G	.	.	PASS	END=228433216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	228433217	.	A	G	1244.84	PASS	BaseQRankSum=-2.504;DP=102;Dels=0.00;FS=1.665;HRun=1;HaplotypeScore=12.3627;MQ=60;MQ0=0;MQRankSum=-0.651;QD=12.20;ReadPosRankSum=0.483;SB=-702.95	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:47,55:102:99:1275,0,1097:60:99:0.539
chr1	228433218	.	G	.	.	PASS	END=228433314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	228433315	.	T	.	.	PASS	END=228433339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	228433340	.	C	.	.	PASS	END=228433345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	228433346	.	C	.	.	PASS	END=228433376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	228433377	.	C	.	.	PASS	END=228433383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:59
chr1	228433384	.	T	.	.	PASS	END=228433387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	228433388	.	A	.	.	PASS	END=228433389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	228434228	.	G	.	.	PASS	END=228434237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	228434238	.	C	.	.	PASS	END=228434260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	228434261	.	G	.	.	PASS	END=228434272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	228434273	.	G	.	.	PASS	END=228434294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	228434295	.	G	.	.	PASS	END=228434312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	228434313	.	A	.	.	PASS	END=228434338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	228434339	.	A	.	.	PASS	END=228434394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	228434395	.	T	C	1388.34	PASS	BaseQRankSum=-1.559;DP=119;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=0.324;QD=11.67;ReadPosRankSum=0.993;SB=-880.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:55,63:119:99:1418,0,1214:60:99:0.534
chr1	228434396	.	G	.	.	PASS	END=228434444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	228434445	.	C	.	.	PASS	END=228434465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	228434466	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:69:99:60
chr1	228434467	.	T	C	717.32	PASS	BaseQRankSum=-0.289;DP=66;Dels=0.00;FS=1.027;HRun=1;HaplotypeScore=2.9887;MQ=60;MQ0=0;MQRankSum=0.854;QD=10.87;ReadPosRankSum=-0.370;SB=-256.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,30:66:99:747,0,835:60:99:0.469
chr1	228434468	.	G	.	.	PASS	END=228434488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	228434489	.	C	.	.	PASS	END=228434504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	228437665	.	G	.	.	PASS	END=228437697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	228437698	.	G	.	.	PASS	END=228437739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	228437740	.	C	.	.	PASS	END=228437780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	228437781	.	G	.	.	PASS	END=228437838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	228437839	.	T	.	.	PASS	END=228437889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	228437890	.	T	.	.	PASS	END=228437897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	228437898	.	C	.	.	PASS	END=228437916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	228437917	.	C	.	.	PASS	END=228437929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	228437930	.	T	.	.	PASS	END=228437941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	228444301	.	C	.	.	PASS	END=228444317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	228444318	.	T	G	1962.07	PASS	BaseQRankSum=1.684;DP=172;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=24.8178;MQ=60;MQ0=0;MQRankSum=-1.607;QD=11.41;ReadPosRankSum=-0.730;SB=-474.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:94,78:172:99:1992,0,2123:60:99:0.453
chr1	228444319	.	T	.	.	PASS	END=228444361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	228444362	.	G	.	.	PASS	END=228444534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr1	228444535	.	G	.	.	PASS	END=228444564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	228444565	.	T	A	4969.49	PASS	DP=162;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=20.2018;MQ=60;MQ0=0;QD=30.68;SB=-1091.16	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,161:162:99:4969,376,0:60:99:1.000
chr1	228444566	.	C	.	.	PASS	END=228444591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	228444592	.	G	.	.	PASS	END=228444620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	228444621	.	G	.	.	PASS	END=228444627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	228447201	.	G	.	.	PASS	END=228447267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	228447268	.	G	.	.	PASS	END=228447335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	228447336	.	C	.	.	PASS	END=228447384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	228447385	.	G	.	.	PASS	END=228447417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	228447418	.	C	.	.	PASS	END=228447431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	228447432	.	T	.	.	PASS	END=228447438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	228447439	.	C	.	.	PASS	END=228447445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	228447446	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:39:60
chr1	228447447	.	C	.	.	PASS	END=228447457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	228447458	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:36:60
chr1	228447459	.	T	.	.	PASS	END=228447477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	228451816	.	G	.	.	PASS	END=228451882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	228451883	.	G	.	.	PASS	END=228451999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	228452000	.	G	.	.	PASS	END=228452032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	228452033	.	C	.	.	PASS	END=228452048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	228452049	.	C	.	.	PASS	END=228452067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	228452068	.	C	.	.	PASS	END=228452092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	228456032	.	A	.	.	PASS	END=228456037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	228456038	.	C	.	.	PASS	END=228456108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	228456109	.	G	.	.	PASS	END=228456131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	228456132	.	T	.	.	PASS	END=228456146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	228456147	.	T	C	1032.80	PASS	BaseQRankSum=-1.942;DP=90;Dels=0.00;FS=0.992;HRun=0;HaplotypeScore=23.7252;MQ=60;MQ0=0;MQRankSum=0.070;QD=11.48;ReadPosRankSum=-1.137;SB=-289.51	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:46,43:90:99:1063,0,1224:60:99:0.483
chr1	228456148	.	G	.	.	PASS	END=228456161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	228456162	.	A	.	.	PASS	END=228456194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	228456195	.	C	.	.	PASS	END=228456218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	228456219	.	G	.	.	PASS	END=228456363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	228456364	.	G	.	.	PASS	END=228456413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	228456414	.	G	.	.	PASS	END=228456453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	228456454	.	G	.	.	PASS	END=228456462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	228456463	.	C	.	.	PASS	END=228456493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	228456494	.	C	.	.	PASS	END=228456531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	228456532	.	A	.	.	PASS	END=228456546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	228456547	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:87:60
chr1	228456548	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:51:60
chr1	228456549	.	C	.	.	PASS	END=228456562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	228456563	.	G	.	.	PASS	END=228456569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	228459625	.	G	.	.	PASS	END=228459680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	228459681	.	G	.	.	PASS	END=228459712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	228459713	.	G	.	.	PASS	END=228459840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	228459841	.	C	.	.	PASS	END=228459858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	228459859	.	G	.	.	PASS	END=228459876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	228459877	.	T	.	.	PASS	END=228459910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	228459911	.	T	.	.	PASS	END=228459922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	228460972	.	G	.	.	PASS	END=228461128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	228461129	.	A	G	2913.41	PASS	BaseQRankSum=-0.942;DP=183;Dels=0.00;FS=12.905;HRun=0;HaplotypeScore=7.6808;MQ=60;MQ0=0;MQRankSum=0.046;QD=15.92;ReadPosRankSum=1.416;SB=-1383.58	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:79,104:183:99:2943,0,1973:60:99:0.568
chr1	228461130	.	C	.	.	PASS	END=228461194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	228461195	.	A	.	.	PASS	END=228461212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	228461213	.	G	.	.	PASS	END=228461236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	228461237	.	T	.	.	PASS	END=228461248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	228461470	.	G	.	.	PASS	END=228461610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:317:99:60
chr1	228461611	.	C	.	.	PASS	END=228461688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr1	228461689	.	A	.	.	PASS	END=228461719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	228461720	.	A	.	.	PASS	END=228461749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	228461878	.	G	.	.	PASS	END=228461912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	228461913	.	T	.	.	PASS	END=228461935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	228461936	.	C	.	.	PASS	END=228461974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:273:99:60
chr1	228461975	.	A	.	.	PASS	END=228462064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:290:99:60
chr1	228462065	.	T	.	.	PASS	END=228462085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr1	228462086	.	C	.	.	PASS	END=228462099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	228462100	.	T	.	.	PASS	END=228462108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	228462109	.	C	.	.	PASS	END=228462133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	228462134	.	T	.	.	PASS	END=228462145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	228462272	.	G	.	.	PASS	END=228462301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	228462302	.	C	.	.	PASS	END=228462329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	228462330	.	G	.	.	PASS	END=228462354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	228462355	.	G	.	.	PASS	END=228462467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	228462468	.	T	.	.	PASS	END=228462488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	228462489	.	A	.	.	PASS	END=228462508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	228462509	.	G	.	.	PASS	END=228462530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	228462531	.	T	.	.	PASS	END=228462542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	228463460	.	G	.	.	PASS	END=228463492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	228463493	.	C	.	.	PASS	END=228463508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	228463509	.	A	.	.	PASS	END=228463648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	228463649	.	A	.	.	PASS	END=228463674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	228463675	.	C	.	.	PASS	END=228463702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	228463703	.	A	.	.	PASS	END=228463719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	228463720	.	C	.	.	PASS	END=228463725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	228463726	.	G	.	.	PASS	END=228463727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	228464150	.	G	.	.	PASS	END=228464168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	228464169	.	T	.	.	PASS	END=228464183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	228464184	.	C	.	.	PASS	END=228464219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	228464220	.	A	.	.	PASS	END=228464247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	228464248	.	T	G	995.63	PASS	BaseQRankSum=-0.567;DP=116;Dels=0.00;FS=2.696;HRun=2;HaplotypeScore=10.5608;MQ=60;MQ0=0;MQRankSum=-0.545;QD=8.58;ReadPosRankSum=1.385;SB=-629.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:65,51:116:99:1026,0,1381:60:99:0.440
chr1	228464249	.	G	.	.	PASS	END=228464275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	228464276	.	T	C	1024.84	PASS	BaseQRankSum=2.523;DP=104;Dels=0.00;FS=2.899;HRun=0;HaplotypeScore=10.5216;MQ=60;MQ0=0;MQRankSum=0.959;QD=9.85;ReadPosRankSum=0.232;SB=-583.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:58,46:104:99:1055,0,1146:60:99:0.442
chr1	228464277	.	T	.	.	PASS	END=228464323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	228464324	.	A	.	.	PASS	END=228464341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	228464342	.	C	.	.	PASS	END=228464360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	228464361	.	G	.	.	PASS	END=228464369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	228464370	.	T	.	.	PASS	END=228464373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	228464374	.	C	.	.	PASS	END=228464380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr1	228464381	.	G	.	.	PASS	END=228464387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	228464388	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:54:60
chr1	228464389	.	G	.	.	PASS	END=228464395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	228464396	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:45:60
chr1	228464397	.	C	.	.	PASS	END=228464405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	228464406	.	T	.	.	PASS	END=228464407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	228464408	.	G	.	.	PASS	END=228464411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	228464412	.	T	.	.	PASS	END=228464417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	228464630	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:99:60
chr1	228464631	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:56:60
chr1	228464632	.	G	.	.	PASS	END=228464656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:78:60
chr1	228464657	.	C	.	.	PASS	END=228464695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	228464696	.	C	.	.	PASS	END=228464756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	228464860	.	G	.	.	PASS	END=228464887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	228464888	.	A	.	.	PASS	END=228464957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	228464958	.	G	.	.	PASS	END=228465000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	228465001	.	C	.	.	PASS	END=228465014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	228465206	.	G	.	.	PASS	END=228465225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	228465226	.	A	.	.	PASS	END=228465234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	228465235	.	G	.	.	PASS	END=228465237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	228465238	.	G	.	.	PASS	END=228465239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	228465240	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	228465241	.	G	.	.	PASS	END=228465254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	228465255	.	G	.	.	PASS	END=228465256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	228465257	.	A	.	.	PASS	END=228465259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	228465260	.	A	.	.	PASS	END=228465265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	228465266	.	C	.	.	PASS	END=228465269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	228465270	.	C	.	.	PASS	END=228465293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	228465294	.	C	.	.	PASS	END=228465339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	228465340	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr1	228465341	.	C	.	.	PASS	END=228465342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	228465343	.	G	.	.	PASS	END=228465345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	228465346	.	A	G	412.33	SB	BaseQRankSum=-0.231;DP=26;Dels=0.00;FS=11.442;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=0.129;QD=15.86;ReadPosRankSum=-0.797;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:12,14:26:99:442,0,348:60:99:0.538
chr1	228465347	.	A	.	.	PASS	END=228465357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	228465358	.	C	.	.	PASS	END=228465367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	228465447	.	G	.	.	PASS	END=228465470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	228465471	.	C	.	.	PASS	END=228465549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	228465550	.	C	.	.	PASS	END=228465559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	228466389	.	G	.	.	PASS	END=228466390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	228466391	.	G	.	.	PASS	END=228466398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	228466399	.	T	.	.	PASS	END=228466401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	228466402	.	C	.	.	PASS	END=228466408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	228466409	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:45:60
chr1	228466410	.	C	.	.	PASS	END=228466428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	228466429	.	T	.	.	PASS	END=228466432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	228466433	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:60:60
chr1	228466434	.	A	.	.	PASS	END=228466451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	228466452	.	G	.	.	PASS	END=228466494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	228466495	.	G	.	.	PASS	END=228466588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	228466589	.	A	.	.	PASS	END=228466609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	228466610	.	C	.	.	PASS	END=228466651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	228466652	.	G	.	.	PASS	END=228466656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	228466875	.	G	.	.	PASS	END=228466892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	228466893	.	G	.	.	PASS	END=228466955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	228466956	.	T	.	.	PASS	END=228467027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	228467028	.	C	.	.	PASS	END=228467061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	228467062	.	T	.	.	PASS	END=228467094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	228467095	.	T	.	.	PASS	END=228467122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:94:60
chr1	228467123	.	C	.	.	PASS	END=228467128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	228467129	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:66:60
chr1	228467130	.	C	.	.	PASS	END=228467145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	228467521	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:99:60
chr1	228467522	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:69:60
chr1	228467523	.	C	.	.	PASS	END=228467529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	228467530	.	G	.	.	PASS	END=228467562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	228467563	.	G	.	.	PASS	END=228467608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	228467609	.	C	.	.	PASS	END=228467619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	228467620	.	G	.	.	PASS	END=228467637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	228467638	.	G	.	.	PASS	END=228467759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	228467760	.	C	.	.	PASS	END=228467771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	228467772	.	T	.	.	PASS	END=228467788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	228467879	.	G	.	.	PASS	END=228467907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	228467908	.	A	.	.	PASS	END=228467926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	228467927	.	G	.	.	PASS	END=228467948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	228467949	.	C	.	.	PASS	END=228467989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr1	228467990	.	C	.	.	PASS	END=228468069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:264:99:60
chr1	228468070	.	C	.	.	PASS	END=228468098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	228468099	.	G	.	.	PASS	END=228468108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	228468109	.	C	.	.	PASS	END=228468146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	228468230	.	G	.	.	PASS	END=228468270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	228468271	.	C	.	.	PASS	END=228468307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	228468308	.	G	.	.	PASS	END=228468415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	228468416	.	C	.	.	PASS	END=228468434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	228468435	.	A	.	.	PASS	END=228468450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	228468451	.	C	.	.	PASS	END=228468472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:96:60
chr1	228468473	.	A	.	.	PASS	END=228468493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	228468494	.	C	.	.	PASS	END=228468497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	228469633	.	G	.	.	PASS	END=228469680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:82:60
chr1	228469681	.	G	.	.	PASS	END=228469712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	228469713	.	G	.	.	PASS	END=228469753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	228469754	.	G	.	.	PASS	END=228469827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	228469828	.	G	.	.	PASS	END=228469865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	228469866	.	T	.	.	PASS	END=228469889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	228469890	.	C	.	.	PASS	END=228469906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	228470718	.	G	.	.	PASS	END=228470733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	228470734	.	T	.	.	PASS	END=228470768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	228470769	.	G	.	.	PASS	END=228470791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	228470792	.	T	.	.	PASS	END=228470813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	228470814	.	C	.	.	PASS	END=228470937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	228470938	.	C	.	.	PASS	END=228470948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	228470949	.	G	.	.	PASS	END=228470975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	228470976	.	C	.	.	PASS	END=228470985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	228471203	.	G	.	.	PASS	END=228471226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	228471227	.	G	.	.	PASS	END=228471262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	228471263	.	G	.	.	PASS	END=228471280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	228471281	.	A	.	.	PASS	END=228471378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:260:99:60
chr1	228471379	.	G	C	3400.72	PASS	BaseQRankSum=1.837;DP=272;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=24.7576;MQ=60;MQ0=0;MQRankSum=1.132;QD=12.50;ReadPosRankSum=-1.268;SB=-1617.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:134,138:272:99:3401,0,3166:60:99:0.507
chr1	228471380	.	C	.	.	PASS	END=228471415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	228471416	.	A	.	.	PASS	END=228471437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	228471438	.	A	.	.	PASS	END=228471453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	228471454	.	C	.	.	PASS	END=228471486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	228471487	.	T	.	.	PASS	END=228471501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	228471502	.	T	.	.	PASS	END=228471526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	228471527	.	T	.	.	PASS	END=228471534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	228473778	.	G	.	.	PASS	END=228473795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	228473796	.	A	.	.	PASS	END=228473814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	228473815	.	T	.	.	PASS	END=228473876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	228473877	.	C	.	.	PASS	END=228473950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	228473951	.	C	.	.	PASS	END=228473972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	228473973	.	C	.	.	PASS	END=228474019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	228474020	.	C	.	.	PASS	END=228474034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	228474035	.	C	.	.	PASS	END=228474045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	228474046	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:72:60
chr1	228474047	.	C	.	.	PASS	END=228474049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	228474050	.	T	.	.	PASS	END=228474051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	228474473	.	G	.	.	PASS	END=228474529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	228474530	.	G	.	.	PASS	END=228474604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	228474605	.	G	.	.	PASS	END=228474628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	228474629	.	C	.	.	PASS	END=228474665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	228474666	.	C	.	.	PASS	END=228474679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	228474680	.	A	.	.	PASS	END=228474687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	228474688	.	C	.	.	PASS	END=228474690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	228474691	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:58:60
chr1	228474692	.	A	.	.	PASS	END=228474696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	228474697	.	T	.	.	PASS	END=228474698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	228474699	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:57:60
chr1	228474700	.	G	.	.	PASS	END=228474717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	228474718	.	C	.	.	PASS	END=228474726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	228474727	.	T	.	.	PASS	END=228474734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	228474735	.	T	.	.	PASS	END=228474736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	228474737	.	C	.	.	PASS	END=228474738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	228474739	.	T	.	.	PASS	END=228474740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	228475394	.	G	.	.	PASS	END=228475427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	228475428	.	A	.	.	PASS	END=228475448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	228475449	.	G	.	.	PASS	END=228475458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	228475459	.	A	.	.	PASS	END=228475467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	228475468	.	T	.	.	PASS	END=228475531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	228475532	.	G	.	.	PASS	END=228475602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	228475603	.	C	.	.	PASS	END=228475617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	228475618	.	C	.	.	PASS	END=228475645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	228475646	.	A	.	.	PASS	END=228475661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	228475761	.	G	.	.	PASS	END=228475830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	228475831	.	G	.	.	PASS	END=228475935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	228475936	.	T	.	.	PASS	END=228475975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	228475976	.	C	.	.	PASS	END=228475985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	228475986	.	T	.	.	PASS	END=228476000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	228476001	.	A	.	.	PASS	END=228476025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr1	228476255	.	T	.	.	PASS	END=228476265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	228476266	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:49:60
chr1	228476267	.	C	.	.	PASS	END=228476297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	228476298	.	C	.	.	PASS	END=228476319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	228476320	.	C	.	.	PASS	END=228476350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	228476351	.	A	.	.	PASS	END=228476404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	228476405	.	G	.	.	PASS	END=228476485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	228476486	.	G	.	.	PASS	END=228476547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	228476548	.	T	.	.	PASS	END=228476577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	228476578	.	T	.	.	PASS	END=228476607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	228476608	.	C	.	.	PASS	END=228476620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:60
chr1	228476621	.	G	.	.	PASS	END=228476644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	228476645	.	A	.	.	PASS	END=228476654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	228479528	.	T	.	.	PASS	END=228479550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	228479551	.	T	.	.	PASS	END=228479590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	228479591	.	T	.	.	PASS	END=228479669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	228479670	.	T	.	.	PASS	END=228479784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	228479785	.	G	.	.	PASS	END=228479824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	228479825	.	C	.	.	PASS	END=228479881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	228479882	.	T	.	.	PASS	END=228479907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	228479908	.	A	.	.	PASS	END=228479919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	228479920	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:69:60
chr1	228479921	.	A	.	.	PASS	END=228479926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	228479927	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:63:60
chr1	228480223	.	G	.	.	PASS	END=228480277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	228480278	.	C	.	.	PASS	END=228480281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	228480282	.	A	G	2412.23	PASS	BaseQRankSum=-1.199;DP=184;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=23.8284;MQ=60;MQ0=0;MQRankSum=0.592;QD=13.11;ReadPosRankSum=-1.190;SB=-1351.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:77,105:184:99:2442,0,1762:60:99:0.577
chr1	228480283	.	G	.	.	PASS	END=228480376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	228480377	.	A	.	.	PASS	END=228480448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	228480449	.	G	.	.	PASS	END=228480474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	228480475	.	C	.	.	PASS	END=228480492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	228481053	.	G	.	.	PASS	END=228481076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	228481077	.	G	.	.	PASS	END=228481120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	228481121	.	G	.	.	PASS	END=228481208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	228481209	.	G	.	.	PASS	END=228481232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	228481233	.	A	.	.	PASS	END=228481263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	228481264	.	A	.	.	PASS	END=228481279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	228481280	.	C	.	.	PASS	END=228481300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	228481301	.	C	.	.	PASS	END=228481317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	228481842	.	G	.	.	PASS	END=228481866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	228481867	.	T	.	.	PASS	END=228481906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	228481907	.	A	.	.	PASS	END=228481919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	228481920	.	G	.	.	PASS	END=228481931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	228481932	.	G	.	.	PASS	END=228481965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	228481966	.	C	.	.	PASS	END=228482027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	228482028	.	G	C	2671.59	PASS	BaseQRankSum=-0.865;DP=229;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=30.4914;MQ=60;MQ0=0;MQRankSum=2.556;QD=11.67;ReadPosRankSum=-0.169;SB=-1756.80	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:100,128:229:99:2702,0,2270:60:99:0.561
chr1	228482029	.	C	.	.	PASS	END=228482082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	228482083	.	C	.	.	PASS	END=228482112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	228482113	.	A	.	.	PASS	END=228482121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	228482480	.	G	.	.	PASS	END=228482540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	228482541	.	C	.	.	PASS	END=228482700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	228482701	.	T	.	.	PASS	END=228482744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	228486084	.	T	.	.	LowGQX	END=228486136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228486137	.	C	.	.	LowGQX	.	GT	./.
chr1	228486138	.	C	.	.	LowGQX	END=228486148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228486149	.	T	.	.	LowGQX	END=228486167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	228486168	.	A	G	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.05;ReadPosRankSum=-0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.29:30,0,70:60:3:0.333
chr1	228486169	.	T	.	.	LowGQX	END=228486195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	228486196	.	G	.	.	LowGQX	END=228486214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	228486215	.	C	.	.	LowGQX	END=228486225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	228486226	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	228486227	.	G	.	.	LowGQX	END=228486254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	228486255	.	A	.	.	LowGQX	END=228486262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	228486263	.	A	.	12.03	LowGQX	DP=10;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:0.06:60:0
chr1	228486264	.	G	.	.	LowGQX	END=228486266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	228486267	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	228486268	.	C	.	.	LowGQX	END=228486311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	228486312	.	T	.	.	LowGQX	END=228486319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	228486320	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:60
chr1	228486321	.	G	.	.	LowGQX	END=228486333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	228486334	.	A	.	.	LowGQX	END=228486380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	228486381	.	T	.	.	LowGQX	END=228486382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	228486383	.	G	.	.	LowGQX	END=228486395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	228486396	.	C	.	.	LowGQX	END=228486403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	228486404	.	C	T	38.85	PASS	BaseQRankSum=0.358;DP=5;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.358;QD=7.77;ReadPosRankSum=-0.358;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,3:5:55.64:69,0,56:60:39:0.600
chr1	228486405	.	G	.	.	LowGQX	END=228486408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	228486409	.	A	.	.	LowGQX	END=228486423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228486959	.	G	.	.	PASS	END=228487052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	228487053	.	C	.	.	PASS	END=228487081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	228487082	.	C	.	.	PASS	END=228487102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	228487103	.	A	.	.	PASS	END=228487135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	228487136	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:69:60
chr1	228487137	.	A	.	.	PASS	END=228487157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	228487158	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:66:60
chr1	228487159	.	A	.	.	PASS	END=228487169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr1	228487170	.	T	.	.	PASS	END=228487171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	228487172	.	T	.	.	PASS	END=228487179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	228487180	.	T	.	.	PASS	END=228487185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	228487186	.	T	.	.	PASS	END=228487197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	228487198	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	228487199	.	A	.	.	PASS	END=228487213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	228487214	.	A	.	.	PASS	END=228487217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	228487218	.	T	.	.	PASS	END=228487223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	228487572	.	G	.	.	LowGQX	END=228487574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	228487575	.	C	.	.	LowGQX	END=228487576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	228487577	.	T	.	.	LowGQX	END=228487589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	228487590	.	T	.	.	LowGQX	END=228487591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	228487592	.	C	.	.	LowGQX	END=228487603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	228487604	.	A	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	228487605	.	G	.	.	LowGQX	END=228487615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	228487616	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:1:60
chr1	228487617	.	C	.	.	LowGQX	END=228487625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	228487626	.	C	.	4.95	LowGQX	DP=8;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:8:0.01:60:0
chr1	228487627	.	A	.	.	LowGQX	END=228487638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	228487639	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	228487640	.	C	.	.	LowGQX	END=228487642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	228487643	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr1	228487644	.	C	.	.	LowGQX	END=228487656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	228487657	.	A	.	.	LowGQX	END=228487674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	228487675	.	C	.	.	PASS	END=228487676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	228487677	.	C	.	.	LowGQX	END=228487679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	228487680	.	G	.	.	PASS	END=228487683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	228487684	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	228487685	.	G	.	.	PASS	END=228487692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	228487693	.	G	.	.	LowGQX	END=228487694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr1	228487695	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	228487696	.	C	.	.	LowGQX	END=228487698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:60
chr1	228487699	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	228487700	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:21:60
chr1	228487701	.	C	.	.	PASS	END=228487702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	228487703	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	228487704	.	C	.	.	PASS	END=228487705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	228487706	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	228487707	.	C	.	.	PASS	END=228487708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	228487709	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	228487710	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	228487711	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	228487712	.	A	.	.	PASS	END=228487725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	228487726	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	228487727	.	G	.	.	PASS	END=228487753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	228487754	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	228487755	.	G	.	.	PASS	END=228487774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	228487775	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr1	228487776	.	C	.	.	PASS	END=228487788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	228487789	.	G	.	.	LowGQX	END=228487790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:27:60
chr1	228487791	.	A	.	.	PASS	END=228487793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	228487794	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:60
chr1	228487795	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	228487796	.	A	.	.	LowGQX	END=228487797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:27:60
chr1	228487798	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	228487799	.	C	.	.	LowGQX	END=228487801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:60
chr1	228487802	.	G	.	.	PASS	END=228487807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	228487808	.	G	.	.	LowGQX	END=228487809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	228487810	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr1	228487811	.	A	.	.	LowGQX	END=228487820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr1	228487821	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	228487822	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr1	228487823	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	228487824	.	C	.	.	LowGQX	END=228487830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	228487831	.	A	.	.	LowGQX	END=228487837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	228487838	.	C	.	.	LowGQX	END=228487839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	228487840	.	G	.	.	LowGQX	END=228487842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	228487843	.	A	.	.	LowGQX	END=228487844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	228487845	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:60
chr1	228487846	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	228491375	.	G	.	.	PASS	END=228491383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	228491384	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:30:60
chr1	228491385	.	C	.	.	PASS	END=228491420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	228491421	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:34:27:60
chr1	228491422	.	A	.	.	PASS	END=228491437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	228491438	.	G	.	.	PASS	END=228491494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:59
chr1	228491495	.	A	.	.	PASS	END=228491538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:87:60
chr1	228491539	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:46:60
chr1	228491540	.	A	.	.	PASS	END=228491554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:59
chr1	228491555	.	A	.	.	PASS	END=228491573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:59
chr1	228491574	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:42:60
chr1	228491575	.	G	.	.	PASS	END=228491578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr1	228491579	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:36:21:60
chr1	228491580	.	C	.	.	PASS	END=228491590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr1	228491591	.	T	.	.	PASS	END=228491595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	228491596	.	T	.	.	PASS	END=228491613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	228491614	.	A	.	.	PASS	END=228491616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr1	228491617	.	C	.	.	PASS	END=228491618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	228491619	.	C	.	.	PASS	END=228491627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	228491628	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr1	228491629	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:54:60
chr1	228491630	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr1	228491631	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:9:60
chr1	228491632	.	T	.	.	PASS	END=228491637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	228491638	.	G	.	.	PASS	END=228491639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	228492003	.	G	.	.	PASS	END=228492045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr1	228492046	.	C	.	.	PASS	END=228492072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	228492073	.	A	.	.	PASS	END=228492136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	228492137	.	G	.	.	PASS	END=228492233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	228492234	.	C	.	.	PASS	END=228492267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	228492823	.	G	.	.	PASS	END=228492866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	228492867	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr1	228492868	.	A	.	.	PASS	END=228492883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	228492884	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:69:60
chr1	228492885	.	T	.	.	PASS	END=228492900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	228492901	.	C	.	.	PASS	END=228492951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	228492952	.	G	.	.	PASS	END=228493034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	228493035	.	G	.	.	PASS	END=228493052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	228493053	.	T	.	.	PASS	END=228493064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:81:60
chr1	228493065	.	G	.	.	PASS	END=228493070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr1	228493071	.	C	.	.	PASS	END=228493072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:55:60
chr1	228493073	.	C	.	.	PASS	END=228493074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	228493075	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:60:60
chr1	228493076	.	T	.	.	PASS	END=228493087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	228494062	.	G	.	.	PASS	END=228494086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	228494087	.	T	.	.	PASS	END=228494112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	228494113	.	G	.	.	PASS	END=228494149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	228494150	.	C	.	.	PASS	END=228494173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr1	228494174	.	G	.	.	PASS	END=228494298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:289:99:60
chr1	228494299	.	C	.	.	PASS	END=228494328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	228494329	.	C	.	.	PASS	END=228494341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	228494601	.	G	.	.	PASS	END=228494612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	228494613	.	C	.	.	PASS	END=228494645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	228494646	.	G	.	.	PASS	END=228494665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	228494666	.	C	.	.	PASS	END=228494695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	228494696	.	G	A	1177.94	PASS	BaseQRankSum=2.594;DP=126;Dels=0.00;FS=2.425;HRun=1;HaplotypeScore=11.4153;MQ=60;MQ0=0;MQRankSum=0.588;QD=9.35;ReadPosRankSum=-0.252;SB=-609.65	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:73,53:126:99:1208,0,1791:60:99:0.421
chr1	228494697	.	A	.	.	PASS	END=228494809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	228494810	.	G	.	.	PASS	END=228494846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	228494847	.	A	.	.	PASS	END=228494868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	228494959	.	G	.	.	PASS	END=228495026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	228495027	.	G	.	.	PASS	END=228495043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	228495044	.	A	.	.	PASS	END=228495075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	228495076	.	A	.	.	PASS	END=228495105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	228495106	.	A	.	.	PASS	END=228495151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr1	228495152	.	A	.	.	PASS	END=228495227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr1	228495228	.	C	.	.	PASS	END=228495232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	228495811	.	G	.	.	PASS	END=228495826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	228495827	.	T	.	.	PASS	END=228495844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	228495845	.	A	.	.	PASS	END=228495881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	228495882	.	C	.	.	PASS	END=228495946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	228495947	.	G	.	.	PASS	END=228495994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr1	228495995	.	T	.	.	PASS	END=228496013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	228496014	.	G	A	2262.45	PASS	BaseQRankSum=0.141;DP=205;Dels=0.00;FS=4.449;HRun=0;HaplotypeScore=11.4685;MQ=60;MQ0=0;MQRankSum=0.784;QD=11.04;ReadPosRankSum=1.045;SB=-832.96	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:100,104:205:99:2292,0,2451:60:99:0.510
chr1	228496015	.	C	.	.	PASS	END=228496040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	228496041	.	C	.	.	PASS	END=228496071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	228496072	.	C	.	.	PASS	END=228496084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	228496799	.	G	.	.	PASS	END=228496822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	228496823	.	C	.	.	PASS	END=228496834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	228496835	.	G	.	.	PASS	END=228496886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	228496887	.	C	.	.	PASS	END=228496964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	228496965	.	A	.	.	PASS	END=228496983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	228496984	.	C	.	.	PASS	END=228496996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	228497173	.	C	.	.	PASS	END=228497237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	228497238	.	T	.	.	PASS	END=228497272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	228503547	.	G	.	.	PASS	END=228503553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	228503554	.	A	.	.	PASS	END=228503568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	228503569	.	G	.	.	PASS	END=228503585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	228503586	.	G	.	.	PASS	END=228503596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	228503597	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:70:60
chr1	228503598	.	G	.	.	PASS	END=228503599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	228503600	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:60
chr1	228503601	.	G	.	.	PASS	END=228503631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	228503632	.	C	.	.	PASS	END=228503670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	228503671	.	C	.	.	PASS	END=228503676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	228503677	.	A	G	1116.72	PASS	BaseQRankSum=-2.646;DP=82;Dels=0.00;FS=0.865;HRun=0;HaplotypeScore=9.5219;MQ=60;MQ0=0;MQRankSum=0.291;QD=13.62;ReadPosRankSum=-1.692;SB=-570.71	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,46:82:99:1147,0,921:60:99:0.568
chr1	228503678	.	C	.	.	PASS	END=228503769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:85:60
chr1	228503770	.	T	.	.	PASS	END=228503805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	228503806	.	T	.	.	PASS	END=228503820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	228504409	.	G	.	.	PASS	END=228504450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	228504451	.	G	.	.	PASS	END=228504471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	228504472	.	T	C	1637.80	PASS	BaseQRankSum=2.242;DP=167;Dels=0.00;FS=3.137;HRun=0;HaplotypeScore=19.8853;MQ=60;MQ0=0;MQRankSum=-0.368;QD=9.81;ReadPosRankSum=-0.243;SB=-840.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:100,66:167:99:1668,0,2090:60:99:0.398
chr1	228504473	.	G	.	.	PASS	END=228504537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	228504538	.	G	.	.	PASS	END=228504590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	228504591	.	C	A	1847.64	PASS	BaseQRankSum=-0.386;DP=195;Dels=0.00;FS=4.840;HRun=1;HaplotypeScore=8.7202;MQ=60;MQ0=0;MQRankSum=-0.923;QD=9.48;ReadPosRankSum=2.371;SB=-813.85	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:105,90:195:99:1878,0,2769:60:99:0.462
chr1	228504592	.	G	.	.	PASS	END=228504608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	228504609	.	C	.	.	PASS	END=228504632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	228504633	.	G	.	.	PASS	END=228504658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	228504659	.	T	.	.	PASS	END=228504668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	228504669	.	G	A	1257.53	PASS	BaseQRankSum=-0.465;DP=77;Dels=0.00;FS=1.388;HRun=0;HaplotypeScore=6.7339;MQ=60;MQ0=0;MQRankSum=0.699;QD=16.33;ReadPosRankSum=-2.476;SB=-123.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:36,41:77:99:1288,0,1005:60:99:0.532
chr1	228504670	.	C	.	.	PASS	END=228504675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	228504676	.	A	.	.	PASS	END=228504683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	228504684	.	G	.	.	PASS	END=228504685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	228505153	.	C	.	.	PASS	END=228505154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	228505155	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:18:60
chr1	228505156	.	T	.	.	PASS	END=228505162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	228505163	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:2:60
chr1	228505164	.	G	.	.	PASS	END=228505173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	228505174	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:39:60
chr1	228505175	.	T	.	.	PASS	END=228505177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	228505178	.	C	.	.	PASS	END=228505190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	228505191	.	G	.	.	PASS	END=228505198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	228505199	.	G	.	.	PASS	END=228505203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:96:60
chr1	228505204	.	G	A	263.66	PASS	BaseQRankSum=-1.300;DP=37;Dels=0.00;FS=2.463;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=-0.047;QD=7.13;ReadPosRankSum=-1.863;SB=-66.60	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:23,14:37:99:294,0,760:60:99:0.378
chr1	228505205	.	C	.	.	PASS	END=228505210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	228505211	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:69:60
chr1	228505212	.	C	.	.	PASS	END=228505217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	228505218	.	G	.	.	PASS	END=228505225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	228505226	.	G	.	.	PASS	END=228505240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	228505241	.	C	.	.	PASS	END=228505264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	228505265	.	C	.	.	PASS	END=228505290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	228505291	.	A	.	.	PASS	END=228505342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	228505343	.	G	.	.	PASS	END=228505413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	228505414	.	C	.	.	PASS	END=228505441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	228505442	.	A	.	.	PASS	END=228505452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	228505592	.	G	.	.	PASS	END=228505615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	228505616	.	C	.	.	PASS	END=228505664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	228505665	.	T	.	.	PASS	END=228505667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr1	228505668	.	C	G	3504.73	PASS	BaseQRankSum=2.133;DP=232;Dels=0.00;FS=1.708;HRun=0;HaplotypeScore=17.0973;MQ=60;MQ0=0;MQRankSum=-0.077;QD=15.11;ReadPosRankSum=0.101;SB=-1612.78	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:94,138:232:99:3505,0,2399:60:99:0.595
chr1	228505669	.	T	.	.	PASS	END=228505698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	228505699	.	T	C	3817.30	PASS	BaseQRankSum=-0.701;DP=281;Dels=0.00;FS=3.602;HRun=0;HaplotypeScore=19.1278;MQ=60;MQ0=0;MQRankSum=0.149;QD=13.58;ReadPosRankSum=1.402;SB=-2274.22	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:114,165:281:99:3817,0,2574:60:99:0.591
chr1	228505700	.	G	.	.	PASS	END=228505738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:259:99:60
chr1	228505739	.	G	A	3608.70	PASS	BaseQRankSum=4.352;DP=255;Dels=0.00;FS=3.801;HRun=0;HaplotypeScore=25.5668;MQ=60;MQ0=0;MQRankSum=1.623;QD=14.15;ReadPosRankSum=-0.016;SB=-1545.06	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:108,147:255:99:3609,0,2586:60:99:0.576
chr1	228505740	.	G	.	.	PASS	END=228505782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	228505783	.	G	.	.	PASS	END=228505822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	228505823	.	C	.	.	PASS	END=228505830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	228505831	.	C	.	.	PASS	END=228505854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	228505855	.	T	.	.	PASS	END=228505874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	228506584	.	G	.	.	LowGQX	END=228506593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	228506594	.	G	.	.	LowGQX	END=228506597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	228506598	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	228506599	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	228506600	.	C	.	.	PASS	END=228506601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	228506602	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	228506603	.	C	.	.	PASS	END=228506615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	228506616	.	C	.	.	PASS	END=228506618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	228506619	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:9:60
chr1	228506620	.	C	.	.	PASS	END=228506625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	228506626	.	A	.	.	PASS	END=228506627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	228506628	.	C	.	.	PASS	END=228506642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	228506643	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:60
chr1	228506644	.	G	.	.	PASS	END=228506656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	228506657	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:33:60
chr1	228506658	.	C	.	.	PASS	END=228506662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	228506663	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:48:60
chr1	228506664	.	C	.	.	PASS	END=228506677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	228506678	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:45:60
chr1	228506679	.	C	.	.	PASS	END=228506688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	228506689	.	A	.	.	PASS	END=228506691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:66:60
chr1	228506692	.	C	.	.	PASS	END=228506701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:60
chr1	228506702	.	G	.	.	PASS	END=228506722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	228506723	.	C	.	.	PASS	END=228506781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	228506782	.	G	.	.	PASS	END=228506836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	228506837	.	C	.	.	PASS	END=228506885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	228506886	.	A	.	.	PASS	END=228506948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	228506949	.	C	.	.	PASS	END=228506955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	228509044	.	G	.	.	PASS	END=228509090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	228509091	.	A	.	.	PASS	END=228509113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	228509114	.	C	.	.	PASS	END=228509150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	228509151	.	C	.	.	PASS	END=228509270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	228509271	.	A	.	.	PASS	END=228509301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	228509302	.	C	.	.	PASS	END=228509409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	228509410	.	G	.	.	PASS	END=228509426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	228509427	.	A	G	3343.85	PASS	BaseQRankSum=3.316;DP=198;Dels=0.00;FS=3.699;HRun=2;HaplotypeScore=16.3483;MQ=60;MQ0=0;MQRankSum=-0.335;QD=16.89;ReadPosRankSum=0.815;SB=-1262.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:79,118:198:99:3344,0,1815:60:99:0.599
chr1	228509428	.	C	.	.	PASS	END=228509468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	228509469	.	A	.	.	PASS	END=228509509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr1	228509510	.	G	.	.	PASS	END=228509778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:314:99:60
chr1	228509779	.	T	.	.	PASS	END=228509821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:319:99:60
chr1	228509822	.	G	.	.	PASS	END=228509873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:253:99:60
chr1	228509874	.	T	.	.	PASS	END=228509920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	228511028	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:84:60
chr1	228511029	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:48:60
chr1	228511030	.	C	.	.	PASS	END=228511043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	228511044	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:42:60
chr1	228511045	.	T	.	.	PASS	END=228511063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	228511064	.	G	.	.	PASS	END=228511099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	228511100	.	G	.	.	PASS	END=228511121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	228511122	.	G	.	.	PASS	END=228511147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	228511148	.	T	.	.	PASS	END=228511260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	228511261	.	G	.	.	PASS	END=228511280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	228511281	.	C	.	.	PASS	END=228511305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	228511306	.	C	.	.	PASS	END=228511307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	228520550	.	T	.	.	PASS	END=228520571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	228520572	.	G	.	.	PASS	END=228520649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	228520839	.	C	.	.	PASS	END=228520875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	228520876	.	C	.	.	PASS	END=228520878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	228520879	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:72:60
chr1	228520880	.	C	.	.	PASS	END=228520903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:60
chr1	228520904	.	G	.	.	PASS	END=228520914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	228520915	.	A	.	.	PASS	END=228520966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	228520967	.	A	.	.	PASS	END=228521024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	228521283	.	G	.	.	PASS	END=228521375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	228521376	.	A	.	.	PASS	END=228521415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	228521416	.	A	.	.	PASS	END=228521432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	228521433	.	A	.	.	PASS	END=228521448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:87:60
chr1	228521449	.	C	.	.	PASS	END=228521459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	228521460	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:63:60
chr1	228521461	.	C	.	.	PASS	END=228521466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	228521467	.	G	.	.	PASS	END=228521475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	228521476	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:36:60
chr1	228521477	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:51:60
chr1	228521478	.	C	.	.	PASS	END=228521481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	228522179	.	T	.	.	PASS	END=228522214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	228522215	.	C	.	.	PASS	END=228522278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	228522515	.	G	.	.	PASS	END=228522534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	228522535	.	G	.	.	PASS	END=228522634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	228522780	.	G	.	.	PASS	END=228522839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	228522840	.	A	.	.	PASS	END=228522907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	228522908	.	C	.	.	PASS	END=228522934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	228522935	.	C	.	.	PASS	END=228522949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	228522950	.	C	.	.	PASS	END=228522976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	228522977	.	C	.	.	PASS	END=228522989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	228522990	.	G	.	.	PASS	END=228522997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	228522998	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:30:60
chr1	228522999	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:42:60
chr1	228523472	.	C	.	.	PASS	END=228523515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	228523516	.	A	.	.	PASS	END=228523571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	228523886	.	C	.	.	PASS	END=228523904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	228523905	.	A	.	.	PASS	END=228523952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	228523953	.	C	.	.	PASS	END=228523985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	228524704	.	G	.	.	PASS	END=228524746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	228524747	.	T	.	.	PASS	END=228524803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	228524804	.	T	.	.	PASS	END=228524827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	228524944	.	G	.	.	PASS	END=228524972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	228524973	.	T	.	.	PASS	END=228525007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	228525008	.	G	A	2313.02	PASS	BaseQRankSum=-2.537;DP=143;Dels=0.00;FS=5.782;HRun=0;HaplotypeScore=10.5211;MQ=60;MQ0=0;MQRankSum=-0.321;QD=16.17;ReadPosRankSum=-0.853;SB=-1402.03	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,101:143:99:2343,0,1043:60:99:0.706
chr1	228525009	.	C	.	.	PASS	END=228525084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	228525644	.	G	.	.	PASS	END=228525666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	228525667	.	C	.	.	PASS	END=228525724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	228525725	.	G	.	.	PASS	END=228525818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	228525819	.	C	.	.	PASS	END=228525845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	228525990	.	G	.	.	PASS	END=228526010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	228526011	.	C	T	1210.60	PASS	BaseQRankSum=0.255;DP=118;Dels=0.00;FS=9.020;HRun=0;HaplotypeScore=12.4154;MQ=60;MQ0=0;MQRankSum=-1.222;QD=10.26;ReadPosRankSum=0.234;SB=-500.73	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:67,51:118:99:1241,0,1936:60:99:0.432
chr1	228526012	.	G	.	.	PASS	END=228526096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	228526097	.	T	.	.	PASS	END=228526101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	228526543	.	C	.	.	PASS	END=228526571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	228526572	.	G	.	.	PASS	END=228526577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	228526578	.	T	A	2015.89	PASS	BaseQRankSum=1.147;DP=186;Dels=0.00;FS=2.030;HRun=0;HaplotypeScore=8.5223;MQ=60;MQ0=0;MQRankSum=1.092;QD=10.84;ReadPosRankSum=0.222;SB=-1072.98	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:98,88:186:99:2046,0,2158:60:99:0.473
chr1	228526579	.	T	.	.	PASS	END=228526690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	228526691	.	T	.	.	PASS	END=228526708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	228526709	.	T	.	.	PASS	END=228526725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	228526726	.	A	.	.	PASS	END=228526727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	228527595	.	C	.	.	PASS	END=228527611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	228527612	.	G	.	.	PASS	END=228527676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	228527677	.	G	.	.	PASS	END=228527746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	228527747	.	G	.	.	PASS	END=228527778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	228527779	.	A	.	.	PASS	END=228527802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:82:60
chr1	228528185	.	C	.	.	PASS	END=228528226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	228528227	.	G	.	.	PASS	END=228528290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	228528291	.	G	.	.	PASS	END=228528344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	228528424	.	G	.	.	PASS	END=228528482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	228528483	.	A	.	.	PASS	END=228528543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	228528544	.	G	.	.	PASS	END=228528584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	228528585	.	G	.	.	PASS	END=228528589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	228528795	.	G	.	.	PASS	END=228528812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	228528813	.	G	.	.	PASS	END=228528853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	228528854	.	A	.	.	PASS	END=228528938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	228528939	.	C	.	.	PASS	END=228528954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	228529137	.	G	.	.	PASS	END=228529138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr1	228529139	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:69:60
chr1	228529140	.	G	.	.	PASS	END=228529160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	228529161	.	C	.	.	PASS	END=228529183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	228529184	.	C	.	.	PASS	END=228529236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	228529237	.	G	.	.	PASS	END=228529303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	228529304	.	T	.	.	PASS	END=228529315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	228529819	.	G	.	.	PASS	END=228529894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	228529895	.	T	.	.	PASS	END=228529945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	228529946	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:111:99:60
chr1	228537590	.	G	.	.	PASS	END=228537618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	228537619	.	C	.	.	PASS	END=228537687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	228537688	.	T	.	.	PASS	END=228537726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	228537727	.	C	.	.	PASS	END=228537738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr1	228537739	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:76:60
chr1	228537740	.	G	.	.	PASS	END=228537758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	228538443	.	T	.	.	PASS	END=228538548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:256:99:60
chr1	228538549	.	A	.	.	PASS	END=228538586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	228538587	.	A	.	.	PASS	END=228538622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	228538623	.	G	.	.	PASS	END=228538647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	228538648	.	G	.	.	PASS	END=228538663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	228538664	.	G	.	.	PASS	END=228538680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	228538681	.	G	.	.	PASS	END=228538682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	228539011	.	G	.	.	PASS	END=228539024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	228539025	.	G	.	.	PASS	END=228539137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	228539138	.	T	.	.	PASS	END=228539151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	228540651	.	G	.	.	PASS	END=228540777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	228543813	.	G	.	.	PASS	END=228543880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	228543881	.	A	.	.	PASS	END=228543918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	228543919	.	T	.	.	PASS	END=228543948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	228543949	.	C	.	.	PASS	END=228543965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	228543966	.	C	.	.	PASS	END=228543981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	228543982	.	A	.	.	PASS	END=228544019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	228544020	.	A	.	.	PASS	END=228544025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	228547297	.	G	.	.	PASS	END=228547302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	228547303	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:33:60
chr1	228547304	.	G	.	.	PASS	END=228547305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	228547306	.	C	.	.	PASS	END=228547311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	228547312	.	C	.	.	PASS	END=228547316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	228547317	.	G	.	.	PASS	END=228547346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:60
chr1	228547347	.	T	.	.	PASS	END=228547349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:75:60
chr1	228547350	.	C	.	.	PASS	END=228547352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	228547353	.	A	C	45.85	LowQD;SB	BaseQRankSum=-3.300;DP=57;Dels=0.00;FS=20.743;HRun=5;HaplotypeScore=48.4922;MQ=60;MQ0=0;MQRankSum=1.481;QD=0.80;ReadPosRankSum=1.249;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:36,21:57:75.84:76,0,702:60:46:0.368
chr1	228547354	.	G	.	.	PASS	END=228547355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	228547356	.	A	.	102.20	PASS	DP=58;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:45:58:72.21:60:72
chr1	228547357	.	A	.	.	PASS	END=228547358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:84:60
chr1	228547359	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:72:60
chr1	228547360	.	C	.	.	PASS	END=228547364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	228547365	.	T	.	129.28	PASS	DP=72;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:54:72:99:60:99
chr1	228547366	.	C	.	.	PASS	END=228547370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	228547371	.	T	.	138.34	PASS	DP=72;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:54:72:99:60:99
chr1	228547372	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:74:99:60
chr1	228547373	.	A	.	79.33	PASS	DP=75;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:58:75:49.34:60:49
chr1	228547374	.	C	.	.	PASS	END=228547375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	228547376	.	T	.	165.44	PASS	DP=80;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:61:80:99:60:99
chr1	228547377	.	T	.	.	PASS	END=228547393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	228547394	.	C	.	.	PASS	END=228547422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	228547423	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:133:39:60
chr1	228547424	.	C	.	.	PASS	END=228547475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	228547476	.	G	.	.	PASS	END=228547496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	228547497	.	A	.	.	PASS	END=228547521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr1	228547522	.	C	.	.	PASS	END=228547573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:307:99:60
chr1	228547574	.	G	.	.	PASS	END=228547677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:360:99:60
chr1	228547678	.	C	.	.	PASS	END=228547754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:60
chr1	228547755	.	G	.	.	PASS	END=228547768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:60
chr1	228547769	.	C	T	2718.04	PASS	BaseQRankSum=0.561;DP=228;Dels=0.00;FS=5.715;HRun=1;HaplotypeScore=30.4447;MQ=60;MQ0=0;MQRankSum=0.695;QD=11.92;ReadPosRankSum=-0.424;SB=-1461.46	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:117,110:228:99:2748,0,3394:60:99:0.485
chr1	228547770	.	G	.	.	PASS	END=228547870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	228547871	.	G	.	.	PASS	END=228547900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	228547901	.	C	T	2784.44	PASS	BaseQRankSum=-0.731;DP=263;Dels=0.00;FS=5.371;HRun=0;HaplotypeScore=48.4599;MQ=60;MQ0=0;MQRankSum=-0.203;QD=10.59;ReadPosRankSum=0.397;SB=-1305.75	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:139,122:263:99:2814,0,3715:60:99:0.467
chr1	228547902	.	G	.	.	PASS	END=228548014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	228548015	.	T	.	.	PASS	END=228548046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	228548047	.	C	.	.	PASS	END=228548071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	228548072	.	T	.	.	PASS	END=228548092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	228548093	.	C	.	.	PASS	END=228548128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	228548129	.	T	.	.	PASS	END=228548143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	228548144	.	G	.	.	PASS	END=228548166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr1	228548167	.	G	.	.	PASS	END=228548188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	228548189	.	T	.	.	PASS	END=228548197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	228548198	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:66:60
chr1	228548199	.	G	.	.	PASS	END=228548205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	228548206	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:43:60
chr1	228548207	.	A	.	.	PASS	END=228548216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	228548217	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:45:60
chr1	228548218	.	C	.	.	PASS	END=228548233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	228548234	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:63:60
chr1	228548235	.	G	.	.	PASS	END=228548240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	228548241	.	A	.	.	PASS	END=228548255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	228548256	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:33:60
chr1	228548257	.	G	.	.	PASS	END=228548259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	228548260	.	A	.	.	PASS	END=228548262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	228548263	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:24:60
chr1	228548264	.	C	.	.	PASS	END=228548269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	228548270	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:42:60
chr1	228548271	.	C	.	.	PASS	END=228548275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	228548276	.	T	.	.	PASS	END=228548279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr1	228548280	.	G	.	.	PASS	END=228548284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	228548285	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:42:60
chr1	228548286	.	G	.	.	PASS	END=228548300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	228548301	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:33:60
chr1	228548302	.	C	.	.	PASS	END=228548315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	228548316	.	A	.	.	PASS	END=228548323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr1	228548324	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:24:60
chr1	228548325	.	T	.	.	PASS	END=228548333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	228548334	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	228548335	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:60
chr1	228548336	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	228548337	.	G	.	.	PASS	END=228548346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	228548347	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	228548348	.	C	.	.	PASS	END=228548357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	228548358	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	228548359	.	A	.	.	PASS	END=228548361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	228548362	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	228548363	.	T	.	.	PASS	END=228548376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	228548377	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	228548378	.	C	.	.	PASS	END=228548384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	228548385	.	G	.	.	LowGQX	END=228548386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	228548387	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	228548388	.	A	.	.	LowGQX	END=228548390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	228548391	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	228548392	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	228548393	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	228548394	.	G	.	.	LowGQX	END=228548403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	228548404	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	228548405	.	C	.	.	LowGQX	END=228548417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	228548418	.	T	.	.	LowGQX	END=228548462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	228550276	.	G	.	.	PASS	END=228550281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	228550282	.	A	.	.	PASS	END=228550314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	228550315	.	G	.	.	PASS	END=228550402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	228550403	.	C	.	.	PASS	END=228550436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	228550437	.	C	.	.	PASS	END=228550456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	228552681	.	G	.	.	PASS	END=228552799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	228553136	.	G	.	.	PASS	END=228553236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	228553237	.	C	.	.	PASS	END=228553260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	228553261	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:109:99:60
chr1	228553771	.	C	.	.	PASS	END=228553795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	228553796	.	C	.	.	PASS	END=228553883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	228553884	.	C	.	.	PASS	END=228553887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	228554100	.	G	.	.	PASS	END=228554155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	228554156	.	C	.	.	PASS	END=228554245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	228554246	.	A	.	.	PASS	END=228554269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	228554500	.	A	.	.	PASS	END=228554539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	228554540	.	C	.	.	PASS	END=228554594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	228554595	.	C	.	.	PASS	END=228554599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	228554675	.	G	.	.	PASS	END=228554780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	228554781	.	G	.	.	PASS	END=228554820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	228554821	.	A	.	.	PASS	END=228554857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:82:60
chr1	228554858	.	T	.	.	PASS	END=228554876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	228555537	.	A	.	.	PASS	END=228555620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	228555621	.	A	.	.	PASS	END=228555643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	228555644	.	C	.	.	PASS	END=228555647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	228556039	.	G	.	.	PASS	END=228556138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	228556422	.	G	.	.	PASS	END=228556450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	228556451	.	C	.	.	PASS	END=228556552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	228556553	.	A	.	.	PASS	END=228556595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	228556800	.	C	.	.	PASS	END=228556815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	228556816	.	G	.	.	PASS	END=228556888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	228556889	.	T	.	.	PASS	END=228556899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	228557642	.	G	.	.	PASS	END=228557688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	228557689	.	C	.	.	PASS	END=228557712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	228557713	.	G	.	.	PASS	END=228557795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	228557887	.	C	.	.	PASS	END=228557964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	228557965	.	T	.	.	PASS	END=228557975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	228557976	.	A	.	.	PASS	END=228557986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	228558379	.	G	.	.	PASS	END=228558423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	228558424	.	G	.	.	PASS	END=228558488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	228558723	.	G	.	.	PASS	END=228558758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:89:60
chr1	228558759	.	G	.	.	PASS	END=228558782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr1	228558783	.	G	.	.	PASS	END=228558808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	228558809	.	G	.	.	PASS	END=228558851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	228558852	.	T	.	.	PASS	END=228558972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	228558973	.	C	.	.	PASS	END=228559031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	228559032	.	T	.	.	PASS	END=228559065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:97:60
chr1	228559066	.	T	.	.	PASS	END=228559085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:60
chr1	228559086	.	C	.	.	PASS	END=228559088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	228559089	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:60
chr1	228559090	.	C	.	.	PASS	END=228559096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	228559097	.	T	.	.	PASS	END=228559099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	228559100	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:63:60
chr1	228559101	.	C	.	.	PASS	END=228559102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	228559103	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:66:60
chr1	228559104	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:90:60
chr1	228559105	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:45:60
chr1	228559106	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:60:60
chr1	228559107	.	C	.	.	PASS	END=228559109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	228559110	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:42:60
chr1	228559111	.	G	.	.	PASS	END=228559124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	228559125	.	T	.	.	PASS	END=228559127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	228559128	.	G	.	.	PASS	END=228559138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	228559139	.	T	.	.	PASS	END=228559148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	228559149	.	G	.	.	PASS	END=228559151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	228559152	.	C	.	.	PASS	END=228559159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	228559160	.	A	.	.	PASS	END=228559162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	228559163	.	C	.	.	PASS	END=228559177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	228559178	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:42:60
chr1	228559179	.	C	.	.	PASS	END=228559183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	228559184	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:54:60
chr1	228559185	.	G	.	.	PASS	END=228559198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr1	228559199	.	T	.	.	PASS	END=228559215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	228559216	.	G	.	.	PASS	END=228559221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	228559222	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:60:60
chr1	228559223	.	G	.	.	PASS	END=228559240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	228559241	.	A	.	.	PASS	END=228559289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:84:60
chr1	228559290	.	G	.	.	PASS	END=228559380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	228559381	.	T	.	.	PASS	END=228559517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	228559518	.	C	.	.	PASS	END=228559555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	228559556	.	G	.	.	PASS	END=228559571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	228559572	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:108:55:60
chr1	228559573	.	G	.	.	PASS	END=228559612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	228559613	.	A	.	20.83	LowGQX	DP=93;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:69:93:0.49:60:0
chr1	228559614	.	G	.	.	PASS	END=228559620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	228559621	.	A	.	29.88	LowGQX	DP=86;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:65:86:2.95:59:3
chr1	228559622	.	G	.	.	PASS	END=228559627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:59
chr1	228559628	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:77:51:60
chr1	228559629	.	C	.	.	PASS	END=228559648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	228559649	.	C	.	.	PASS	END=228559690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	228559691	.	T	.	.	PASS	END=228559727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	228559728	.	A	.	223.89	PASS	DP=161;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:122:161:99:60:99
chr1	228559729	.	C	.	.	PASS	END=228559763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	228559764	.	C	.	.	PASS	END=228559898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	228559899	.	A	.	.	PASS	END=228559924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	228559925	.	A	.	.	PASS	END=228559983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	228559984	.	C	.	.	PASS	END=228559993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr1	228559994	.	C	T	2259.09	PASS	BaseQRankSum=-0.064;DP=198;Dels=0.00;FS=0.554;HRun=0;HaplotypeScore=26.6187;MQ=60;MQ0=0;MQRankSum=1.325;QD=11.41;ReadPosRankSum=0.715;SB=-1135.98	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:102,94:198:99:2289,0,2846:60:99:0.480
chr1	228559995	.	G	.	.	PASS	END=228560138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	228560139	.	A	G	7068.15	PASS	BaseQRankSum=-1.229;DP=242;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=37.1664;MQ=60;MQ0=0;MQRankSum=-1.445;QD=29.21;ReadPosRankSum=0.496;SB=-3943.74	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,240:241:99:7068,511,0:60:99:0.996
chr1	228560140	.	G	.	.	PASS	END=228560200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:60
chr1	228560201	.	G	.	.	PASS	END=228560280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:307:99:60
chr1	228560281	.	C	.	.	PASS	END=228560491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:350:99:60
chr1	228560492	.	C	.	.	PASS	END=228560530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:60
chr1	228560531	.	C	.	.	PASS	END=228560554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr1	228560555	.	T	.	.	PASS	END=228560577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	228560578	.	A	.	.	PASS	END=228560603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	228560604	.	C	.	.	PASS	END=228560626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	228560627	.	T	.	.	PASS	END=228560674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	228560675	.	T	.	.	PASS	END=228560699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	228560700	.	T	C	1823.25	SB	DP=54;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;QD=33.76;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,53:54:99:1856,147,0:60:99:1.000
chr1	228560701	.	G	.	.	PASS	END=228560719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	228560720	.	T	.	.	PASS	END=228560729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	228560730	.	A	.	.	PASS	END=228560743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	228560744	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:48:60
chr1	228560745	.	G	.	.	PASS	END=228560752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	228560753	.	T	.	.	PASS	END=228560767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	228560768	.	A	.	.	PASS	END=228560775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	228560776	.	C	.	.	PASS	END=228560782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	228561632	.	G	.	.	PASS	END=228561676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	228561677	.	T	.	.	PASS	END=228561735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	228561736	.	C	.	.	PASS	END=228561742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	228562010	.	C	.	.	PASS	END=228562036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	228562037	.	C	.	.	PASS	END=228562125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	228562285	.	G	.	.	PASS	END=228562390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	228562391	.	A	.	.	PASS	END=228562402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	228562403	.	T	.	.	PASS	END=228562426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	228562427	.	C	.	.	PASS	END=228562453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	228563402	.	G	.	.	PASS	END=228563505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	228563506	.	T	.	.	PASS	END=228563525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	228563708	.	G	.	.	PASS	END=228563740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	228563741	.	T	.	.	PASS	END=228563838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	228563839	.	C	.	.	PASS	END=228563868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	228563869	.	C	.	.	PASS	END=228563879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	228564485	.	C	.	.	PASS	END=228564522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	228564523	.	G	.	.	PASS	END=228564584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	228564752	.	G	.	.	PASS	END=228564769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	228564770	.	T	.	.	PASS	END=228564844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	228564845	.	C	.	.	PASS	END=228564908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	228564909	.	C	.	.	PASS	END=228564921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	228564922	.	A	.	.	PASS	END=228564950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	228564951	.	G	.	.	PASS	END=228564960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr1	228564961	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:75:60
chr1	228564962	.	G	.	.	PASS	END=228564974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	228564975	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr1	228564976	.	C	.	.	PASS	END=228564992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	228565189	.	G	.	.	PASS	END=228565221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	228565222	.	A	.	.	PASS	END=228565269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	228565270	.	T	.	.	PASS	END=228565324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	228565325	.	C	.	.	PASS	END=228565355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	228565356	.	C	.	.	PASS	END=228565372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	228565373	.	G	.	.	PASS	END=228565405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	228565406	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:69:60
chr1	228565407	.	A	.	.	PASS	END=228565408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	228565409	.	C	.	.	PASS	END=228565413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr1	228565631	.	G	.	.	PASS	END=228565660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	228565661	.	G	.	.	PASS	END=228565739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	228565971	.	G	.	.	PASS	END=228566017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	228566018	.	C	.	.	PASS	END=228566074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	228566075	.	G	.	.	PASS	END=228566098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	228566099	.	A	.	.	PASS	END=228566124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	228566125	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:65:60
chr1	228566126	.	G	.	.	PASS	END=228566130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	228566318	.	G	.	.	PASS	END=228566323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	228566324	.	G	.	.	PASS	END=228566348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	228566349	.	G	.	.	PASS	END=228566372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	228566373	.	C	.	.	PASS	END=228566456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	228566457	.	G	.	.	PASS	END=228566469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	228566470	.	A	.	.	PASS	END=228566496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	228582404	.	A	.	.	LowGQX	END=228582407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582408	.	A	.	.	LowGQX	.	GT	./.
chr1	228582409	.	C	.	.	LowGQX	END=228582414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582415	.	A	.	.	LowGQX	.	GT	./.
chr1	228582416	.	G	.	.	LowGQX	END=228582431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582432	.	A	.	.	LowGQX	.	GT	./.
chr1	228582433	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582434	.	C	.	.	LowGQX	.	GT	./.
chr1	228582435	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582436	.	A	.	.	LowGQX	.	GT	./.
chr1	228582437	.	C	.	.	LowGQX	END=228582440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582441	.	T	.	.	LowGQX	.	GT	./.
chr1	228582442	.	C	.	.	LowGQX	END=228582447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582448	.	G	.	.	LowGQX	.	GT	./.
chr1	228582449	.	C	.	.	LowGQX	END=228582451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582452	.	A	.	.	LowGQX	.	GT	./.
chr1	228582453	.	T	.	.	LowGQX	END=228582458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582459	.	T	.	.	LowGQX	.	GT	./.
chr1	228582460	.	C	.	.	LowGQX	END=228582462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582463	.	G	.	.	LowGQX	.	GT	./.
chr1	228582464	.	G	.	.	LowGQX	END=228582469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582470	.	C	.	.	LowGQX	.	GT	./.
chr1	228582471	.	T	.	.	LowGQX	END=228582476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582477	.	A	.	.	LowGQX	.	GT	./.
chr1	228582478	.	C	.	.	LowGQX	END=228582485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582486	.	A	.	.	LowGQX	END=228582488	GT	./.
chr1	228582489	.	A	.	.	LowGQX	END=228582490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582491	.	A	.	.	LowGQX	.	GT	./.
chr1	228582492	.	G	.	.	LowGQX	END=228582495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582496	.	C	.	.	LowGQX	.	GT	./.
chr1	228582497	.	C	.	.	LowGQX	END=228582498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582499	.	C	.	.	LowGQX	END=228582500	GT	./.
chr1	228582501	.	G	.	.	LowGQX	END=228582503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582504	.	T	.	.	LowGQX	.	GT	./.
chr1	228582505	.	C	.	.	LowGQX	END=228582506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582507	.	C	.	.	LowGQX	END=228582509	GT	./.
chr1	228582510	.	A	.	.	LowGQX	END=228582514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582515	.	G	.	.	LowGQX	.	GT	./.
chr1	228582516	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582517	.	G	.	.	LowGQX	END=228582519	GT	./.
chr1	228582520	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582521	.	T	.	.	LowGQX	END=228582522	GT	./.
chr1	228582523	.	G	.	.	LowGQX	END=228582525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582526	.	A	.	.	LowGQX	END=228582528	GT	./.
chr1	228582529	.	G	.	.	LowGQX	END=228582530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582531	.	T	.	.	LowGQX	END=228582532	GT	./.
chr1	228582533	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582534	.	A	.	.	LowGQX	.	GT	./.
chr1	228582535	.	T	.	.	LowGQX	END=228582538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582539	.	A	.	.	LowGQX	END=228582605	GT	./.
chr1	228582606	.	G	.	.	LowGQX	END=228582744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228582745	.	C	.	.	LowGQX	END=228582764	GT	./.
chr1	228582765	.	C	.	.	LowGQX	END=228582769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228582770	.	A	.	.	LowGQX	.	GT	./.
chr1	228582771	.	C	.	.	LowGQX	END=228582778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228582779	.	T	.	.	LowGQX	.	GT	./.
chr1	228582780	.	C	.	.	LowGQX	END=228582782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	228582783	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	228582784	.	G	.	.	LowGQX	.	GT	./.
chr1	228582785	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	228582786	.	A	.	.	LowGQX	END=228582795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228582796	.	T	.	2.30	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0:60:0
chr1	228582797	.	G	.	.	LowGQX	END=228582799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228582800	.	G	.	.	LowGQX	.	GT	./.
chr1	228582801	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	228582802	.	G	.	.	LowGQX	END=228582803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228582804	.	A	C	3.09	LowGQ;LowGQX;LowQD;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=1.54;ReadPosRankSum=0.804;SB=-0.03	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:19.67:30,0,20:60:3:0.500
chr1	228582805	.	G	.	.	LowGQX	END=228582808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228582809	.	T	.	.	LowGQX	.	GT	./.
chr1	228582810	.	C	.	.	LowGQX	END=228582815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228582816	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	228582817	.	C	.	.	LowGQX	END=228582818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	228582819	.	G	.	.	LowGQX	END=228582826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	228582827	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	228582828	.	G	.	.	LowGQX	END=228582835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	228582836	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	228582837	.	C	.	.	LowGQX	END=228582844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	228582845	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	228582846	.	C	.	.	LowGQX	END=228582851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	228582852	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	228582853	.	G	.	.	LowGQX	END=228582861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	228582862	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	228582863	.	G	.	.	LowGQX	END=228582874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	228582875	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	228582876	.	C	.	.	LowGQX	END=228582881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	228582882	.	G	.	4.58	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.01:60:0
chr1	228582883	.	C	.	.	LowGQX	END=228582886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	228582887	.	A	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	228582888	.	C	.	.	LowGQX	END=228582896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	228582897	.	T	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	228582898	.	G	.	.	LowGQX	END=228582900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	228582901	.	T	.	.	LowGQX	END=228582902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	228582903	.	C	.	.	LowGQX	END=228582905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	228582906	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	228582907	.	C	.	.	LowGQX	END=228582911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	228582912	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	228582913	.	C	.	.	LowGQX	END=228582918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	228582919	.	A	.	.	LowGQX	END=228582946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228582947	.	A	.	.	LowGQX	.	GT	./.
chr1	228582948	.	C	.	.	LowGQX	END=228582955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228584348	.	C	.	.	LowGQX	END=228584750	GT	./.
chr1	228584752	.	G	.	.	LowGQX	END=228584863	GT	./.
chr1	228584864	.	G	.	.	LowGQX	END=228584905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228588663	.	A	.	.	LowGQX	.	GT	./.
chr1	228588664	.	C	.	.	LowGQX	END=228588678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228588679	.	G	.	.	LowGQX	.	GT	./.
chr1	228588680	.	A	.	.	LowGQX	END=228588701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228588702	.	T	.	.	LowGQX	.	GT	./.
chr1	228588703	.	C	.	.	LowGQX	END=228588707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228588708	.	T	.	.	LowGQX	.	GT	./.
chr1	228588709	.	C	.	.	LowGQX	END=228588714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228588715	.	T	.	.	LowGQX	.	GT	./.
chr1	228588716	.	G	.	.	LowGQX	END=228588719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228588720	.	T	.	.	LowGQX	.	GT	./.
chr1	228588721	.	C	.	.	LowGQX	END=228588728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228588729	.	T	.	.	LowGQX	.	GT	./.
chr1	228588730	.	G	.	.	LowGQX	END=228588735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228588736	.	T	.	.	LowGQX	.	GT	./.
chr1	228588737	.	C	.	.	LowGQX	END=228588750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228588751	.	G	.	.	LowGQX	END=228588897	GT	./.
chr1	228589765	.	G	.	.	LowGQX	END=228589864	GT	./.
chr1	228593853	.	A	.	.	LowGQX	END=228594264	GT	./.
chr1	228595900	.	G	.	.	PASS	END=228595924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	228595925	.	C	.	.	PASS	END=228596067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:286:99:60
chr1	228596068	.	T	.	.	PASS	END=228596235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	228596236	.	A	.	.	PASS	END=228596296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	228596297	.	A	.	.	PASS	END=228596376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	228596377	.	C	.	.	PASS	END=228596426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	228596427	.	G	.	.	PASS	END=228596454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	228596723	.	C	.	.	PASS	END=228596754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	228596755	.	T	.	.	PASS	END=228596858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	228596859	.	G	.	.	PASS	END=228596978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	228596992	.	A	.	.	PASS	END=228597022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	228597023	.	A	.	.	PASS	END=228597035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	228597036	.	C	.	.	PASS	END=228597046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:90:60
chr1	228597047	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:48:60
chr1	228597048	.	C	.	.	PASS	END=228597076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	228597077	.	G	.	.	PASS	END=228597113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	228597114	.	T	.	.	PASS	END=228597132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	228597133	.	G	.	.	PASS	END=228597151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	228598645	.	A	.	.	PASS	END=228598669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	228598670	.	G	.	.	PASS	END=228598697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	228598698	.	C	.	.	PASS	END=228598802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	228598803	.	C	.	.	PASS	END=228598848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	228598849	.	A	.	.	PASS	END=228598879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	228601496	.	A	.	.	PASS	END=228601532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	228601533	.	G	.	.	PASS	END=228601583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	228601584	.	C	.	.	PASS	END=228601595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	228602343	.	A	.	.	PASS	END=228602366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	228602367	.	T	.	.	PASS	END=228602412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	228602413	.	A	.	.	PASS	END=228602523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	228602524	.	C	.	.	PASS	END=228602576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	228602577	.	C	.	.	PASS	END=228602684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	228602685	.	G	.	.	PASS	END=228602775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	228612565	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	228612566	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	228612567	.	G	.	.	PASS	END=228612569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	228612570	.	T	.	.	LowGQX	END=228612571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	228612572	.	T	.	.	PASS	END=228612578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	228612579	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	228612580	.	A	.	.	PASS	END=228612589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	228612590	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	228612591	.	C	.	.	PASS	END=228612597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	228612598	.	G	.	.	PASS	END=228612602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr1	228612603	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:6:60
chr1	228612604	.	G	.	.	PASS	END=228612613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	228612614	.	T	.	.	PASS	END=228612633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	228612634	.	G	.	.	PASS	END=228612654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	228612655	.	G	.	.	PASS	END=228612667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:96:60
chr1	228612668	.	A	.	.	PASS	END=228612673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	228612674	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:72:60
chr1	228612675	.	C	.	.	PASS	END=228612691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	228612692	.	A	.	.	PASS	END=228612708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	228612709	.	C	.	.	PASS	END=228612740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	228612741	.	C	.	.	PASS	END=228612793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	228612794	.	T	.	.	PASS	END=228612837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	228612838	.	G	T	4571.77	PASS	DP=155;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;QD=29.50;SB=-2461.40	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,155:155:99:4572,346,0:60:99:1.000
chr1	228612839	.	A	.	.	PASS	END=228612891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	228612892	.	G	A	1475.14	PASS	BaseQRankSum=0.167;DP=122;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=1.566;QD=12.09;ReadPosRankSum=-2.053;SB=-641.82	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:64,58:122:99:1505,0,1661:60:99:0.475
chr1	228612893	.	C	.	.	PASS	END=228612937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	228612938	.	G	.	.	PASS	END=228612967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	228612968	.	T	.	.	PASS	END=228613000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	228613001	.	C	.	.	PASS	END=228613017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	228613018	.	T	.	.	PASS	END=228613037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	228613038	.	T	.	.	PASS	END=228613049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	228613050	.	G	.	.	PASS	END=228613051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:96:60
chr1	228613052	.	T	C	1142.27	PASS	DP=31;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9997;MQ=60;MQ0=0;QD=36.85;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,31:31:90.29:1175,90,0:60:90:1.000
chr1	228613053	.	G	.	.	PASS	END=228613067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr1	228613068	.	C	.	.	PASS	END=228613076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	228613077	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:51:60
chr1	228645124	.	C	.	.	PASS	END=228645198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	228645199	.	C	.	.	PASS	END=228645315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	228645316	.	C	.	.	PASS	END=228645356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	228645357	.	C	.	.	PASS	END=228645388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	228645389	.	C	.	.	PASS	END=228645406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	228645407	.	C	.	.	PASS	END=228645423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr1	228645424	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:60:60
chr1	228645425	.	G	.	.	PASS	END=228645440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	228645441	.	G	.	.	PASS	END=228645452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	228645453	.	C	.	.	PASS	END=228645469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	228645470	.	A	.	.	PASS	END=228645479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	228645480	.	G	.	.	PASS	END=228645499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	228645500	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	228645501	.	C	.	.	PASS	END=228645502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	228645503	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:60
chr1	228645504	.	A	.	.	PASS	END=228645508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	228645509	.	G	.	.	PASS	END=228645520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	228645829	.	T	.	.	LowGQX	END=228646213	GT	./.
chr1	228675178	.	C	.	.	LowGQX	END=228675587	GT	./.
chr1	228676657	.	A	.	.	LowGQX	END=228676756	GT	./.
chr1	228680753	.	G	.	.	LowGQX	END=228680975	GT	./.
chr1	228681535	.	T	.	.	LowGQX	END=228681634	GT	./.
chr1	228698125	.	T	.	.	LowGQX	END=228698180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228698181	.	T	.	.	LowGQX	.	GT	./.
chr1	228698182	.	C	.	.	LowGQX	END=228698188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	228698189	.	C	.	.	LowGQX	.	GT	./.
chr1	228698190	.	G	.	.	LowGQX	END=228698204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228698205	.	A	.	.	LowGQX	.	GT	./.
chr1	228698206	.	C	.	.	LowGQX	END=228698212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228698213	.	G	.	.	LowGQX	END=228698214	GT	./.
chr1	228698215	.	G	.	.	LowGQX	END=228698223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228698224	.	T	.	.	LowGQX	.	GT	./.
chr1	228698225	.	G	.	.	LowGQX	END=228698230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228698231	.	G	.	.	LowGQX	.	GT	./.
chr1	228698232	.	G	.	.	LowGQX	END=228698244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228698245	.	T	.	.	LowGQX	.	GT	./.
chr1	228698246	.	C	.	.	LowGQX	END=228698248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228698249	.	A	.	.	LowGQX	END=228698379	GT	./.
chr1	228699351	.	C	.	.	LowGQX	END=228699705	GT	./.
chr1	228699912	.	G	.	.	LowGQX	END=228700011	GT	./.
chr1	228785876	.	T	.	.	LowGQX	END=228786125	GT	./.
chr1	228786126	.	C	.	.	LowGQX	END=228786284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228786285	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	228786286	.	G	.	.	LowGQX	END=228786316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	228786317	.	T	.	.	LowGQX	END=228786371	GT	./.
chr1	228871477	.	C	.	.	LowGQX	END=228871756	GT	./.
chr1	228873400	.	A	.	.	LowGQX	END=228873499	GT	./.
chr1	228879030	.	A	.	.	LowGQX	END=228879489	GT	./.
chr1	229385441	.	C	.	.	LowGQX	END=229385507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229385508	.	A	.	.	LowGQX	.	GT	./.
chr1	229385509	.	C	.	.	LowGQX	END=229385546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229385547	.	G	.	.	LowGQX	.	GT	./.
chr1	229385548	.	T	.	.	LowGQX	END=229385550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229385551	.	A	.	.	LowGQX	.	GT	./.
chr1	229385552	.	G	.	.	LowGQX	END=229385556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229385557	.	C	.	.	LowGQX	.	GT	./.
chr1	229385558	.	T	.	.	LowGQX	END=229385584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229385585	.	A	.	.	LowGQX	END=229385611	GT	./.
chr1	229385612	.	C	.	.	LowGQX	END=229385613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229385614	.	T	.	.	LowGQX	END=229385615	GT	./.
chr1	229385616	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229385617	.	T	.	.	LowGQX	.	GT	./.
chr1	229385618	.	T	.	.	LowGQX	END=229385620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229385621	.	T	.	.	LowGQX	END=229385622	GT	./.
chr1	229385623	.	T	.	.	LowGQX	END=229385627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229385628	.	A	.	.	LowGQX	END=229385630	GT	./.
chr1	229385631	.	T	.	.	LowGQX	END=229385648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229385649	.	T	.	.	LowGQX	.	GT	./.
chr1	229385650	.	C	.	.	LowGQX	END=229385651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229385652	.	T	.	.	LowGQX	END=229385653	GT	./.
chr1	229385654	.	C	.	.	LowGQX	END=229385655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229385656	.	T	.	.	LowGQX	.	GT	./.
chr1	229385657	.	T	.	.	LowGQX	END=229385684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229385685	.	T	.	.	LowGQX	END=229385686	GT	./.
chr1	229385687	.	C	.	.	LowGQX	END=229385688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229385689	.	T	.	.	LowGQX	.	GT	./.
chr1	229385690	.	T	.	.	LowGQX	END=229385691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229385692	.	C	.	.	LowGQX	.	GT	./.
chr1	229385693	.	T	.	.	LowGQX	END=229385711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229385712	.	T	.	.	LowGQX	.	GT	./.
chr1	229385713	.	C	.	.	LowGQX	END=229385852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229406993	.	G	.	.	LowGQX	END=229407152	GT	./.
chr1	229422171	.	T	.	.	LowGQX	END=229422323	GT	./.
chr1	229424474	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424475	.	G	.	.	LowGQX	.	GT	./.
chr1	229424476	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424477	.	C	.	.	LowGQX	.	GT	./.
chr1	229424478	.	A	.	.	LowGQX	END=229424480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424481	.	G	.	.	LowGQX	.	GT	./.
chr1	229424482	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424483	.	T	.	.	LowGQX	END=229424484	GT	./.
chr1	229424485	.	A	.	.	LowGQX	END=229424489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424490	.	A	.	.	LowGQX	.	GT	./.
chr1	229424491	.	A	.	.	LowGQX	END=229424492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424493	.	C	.	.	LowGQX	.	GT	./.
chr1	229424494	.	A	.	.	LowGQX	END=229424502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424503	.	G	.	.	LowGQX	.	GT	./.
chr1	229424504	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424505	.	G	.	.	LowGQX	.	GT	./.
chr1	229424506	.	T	.	.	LowGQX	END=229424507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424508	.	G	.	.	LowGQX	END=229424518	GT	./.
chr1	229424519	.	A	.	.	LowGQX	END=229424520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424521	.	A	.	.	LowGQX	.	GT	./.
chr1	229424522	.	G	.	.	LowGQX	END=229424528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424529	.	A	.	.	LowGQX	.	GT	./.
chr1	229424530	.	A	.	.	LowGQX	END=229424534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424535	.	G	.	.	LowGQX	.	GT	./.
chr1	229424536	.	G	.	.	LowGQX	END=229424538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424539	.	G	.	.	LowGQX	.	GT	./.
chr1	229424540	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424541	.	A	.	.	LowGQX	.	GT	./.
chr1	229424542	.	A	.	.	LowGQX	END=229424548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424549	.	A	.	.	LowGQX	.	GT	./.
chr1	229424550	.	A	.	.	LowGQX	END=229424555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424556	.	C	.	.	LowGQX	.	GT	./.
chr1	229424557	.	A	.	.	LowGQX	END=229424563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424564	.	G	.	.	LowGQX	.	GT	./.
chr1	229424565	.	G	.	.	LowGQX	END=229424571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424572	.	C	.	.	LowGQX	.	GT	./.
chr1	229424573	.	A	.	.	LowGQX	END=229424599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424600	.	C	.	.	LowGQX	.	GT	./.
chr1	229424601	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424602	.	C	.	.	LowGQX	.	GT	./.
chr1	229424603	.	T	.	.	LowGQX	END=229424612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424613	.	A	.	.	LowGQX	.	GT	./.
chr1	229424614	.	A	.	.	LowGQX	END=229424617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424618	.	A	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	229424619	.	T	.	.	LowGQX	END=229424622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424623	.	A	.	.	LowGQX	.	GT	./.
chr1	229424624	.	A	.	.	LowGQX	END=229424625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424626	.	A	.	.	LowGQX	.	GT	./.
chr1	229424627	.	T	.	.	LowGQX	END=229424630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229424631	.	A	.	.	LowGQX	.	GT	./.
chr1	229424632	.	T	.	.	LowGQX	END=229424643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229431577	.	C	.	.	LowGQX	END=229431676	GT	./.
chr1	229433227	.	A	.	.	LowGQX	END=229433385	GT	./.
chr1	229434662	.	T	.	.	LowGQX	END=229434821	GT	./.
chr1	229438607	.	A	.	.	LowGQX	END=229438726	GT	./.
chr1	229440870	.	A	.	.	LowGQX	END=229440887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229440888	.	A	.	.	LowGQX	.	GT	./.
chr1	229440889	.	G	.	.	LowGQX	END=229440890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229440891	.	A	.	.	LowGQX	.	GT	./.
chr1	229440892	.	T	.	.	LowGQX	END=229440917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229440918	.	A	.	.	LowGQX	.	GT	./.
chr1	229440919	.	G	.	.	LowGQX	END=229440945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229440946	.	C	.	.	LowGQX	.	GT	./.
chr1	229440947	.	C	.	.	LowGQX	END=229441028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229441029	.	T	.	.	LowGQX	.	GT	./.
chr1	229441030	.	T	.	.	LowGQX	END=229441075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229460980	.	C	.	.	LowGQX	END=229461160	GT	./.
chr1	229462483	.	A	.	.	LowGQX	END=229462755	GT	./.
chr1	229463244	.	C	.	.	LowGQX	END=229463255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229463256	.	A	.	.	LowGQX	.	GT	./.
chr1	229463257	.	C	.	.	LowGQX	END=229463326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229463327	.	A	.	.	LowGQX	.	GT	./.
chr1	229463328	.	G	.	.	LowGQX	END=229463343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229476110	.	T	.	.	LowGQX	END=229476209	GT	./.
chr1	229477833	.	C	.	.	LowGQX	END=229478214	GT	./.
chr1	229567195	.	A	.	.	PASS	END=229567226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	229567227	.	T	.	.	PASS	END=229567243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	229567244	.	G	.	.	PASS	END=229567284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	229567285	.	G	.	.	PASS	END=229567394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	229567395	.	A	.	.	PASS	END=229567417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	229567418	.	C	.	.	PASS	END=229567441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	229567442	.	G	.	.	PASS	END=229567469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:90:60
chr1	229567470	.	T	.	.	PASS	END=229567620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	229567621	.	G	.	.	PASS	END=229567765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:89:60
chr1	229567766	.	C	.	.	PASS	END=229567853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	229567854	.	G	.	.	PASS	END=229567915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	229567916	.	C	.	.	PASS	END=229568106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:90:60
chr1	229568107	.	C	.	.	PASS	END=229568137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:59
chr1	229568138	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:63:59
chr1	229568139	.	A	.	.	PASS	END=229568145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:59
chr1	229568146	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:57:59
chr1	229568147	.	G	.	.	PASS	END=229568148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:59
chr1	229568149	.	T	.	.	PASS	END=229568173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:59
chr1	229568174	.	G	.	.	PASS	END=229568177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:59
chr1	229568178	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:30:59
chr1	229568179	.	C	.	.	PASS	END=229568199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:59
chr1	229568200	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:45:58
chr1	229568201	.	G	.	.	PASS	END=229568202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:58
chr1	229568203	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:45:58
chr1	229568204	.	T	.	.	PASS	END=229568205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:33:58
chr1	229568206	.	G	.	.	PASS	END=229568213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:58
chr1	229568214	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:36:58
chr1	229568215	.	G	.	.	PASS	END=229568216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:57
chr1	229568217	.	G	.	.	LowGQX	END=229568218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:57
chr1	229568219	.	C	.	.	PASS	END=229568221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:57
chr1	229568222	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:57
chr1	229568223	.	G	.	.	PASS	END=229568228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:57
chr1	229568229	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:57
chr1	229568252	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:50
chr1	229568253	.	G	.	.	LowGQX	END=229568256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:50
chr1	229568257	.	G	.	.	LowGQX	END=229568260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:52
chr1	229568261	.	G	.	42.03	LowGQX	DP=5;MQ=57;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:57:12
chr1	229568262	.	G	.	42.03	LowGQX	DP=5;MQ=57;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:57:12
chr1	229568263	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:57
chr1	229568264	.	C	.	.	LowGQX	END=229568267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:57
chr1	229568268	.	G	.	39.02	LowGQX	DP=4;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:3:9.03:56:9
chr1	229568269	.	G	.	39.02	LowGQX	DP=4;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:3:9.03:56:9
chr1	229568270	.	C	.	39.02	LowGQX	DP=4;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:3:9.03:56:9
chr1	229568271	.	G	.	.	LowGQX	END=229568275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:56
chr1	229568276	.	A	.	36.01	LowGQX	DP=5;MQ=57;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:57:6
chr1	229568277	.	G	.	.	LowGQX	END=229568278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:57
chr1	229568279	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:58
chr1	229568280	.	G	.	.	LowGQX	END=229568281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:58
chr1	229568282	.	C	.	.	LowGQX	END=229568283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:58
chr1	229568284	.	G	.	.	LowGQX	END=229568285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:58
chr1	229568286	.	G	.	.	PASS	END=229568287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:58
chr1	229568288	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:58
chr1	229568289	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:58
chr1	229568290	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:58
chr1	229568291	.	G	.	.	PASS	END=229568295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:58
chr1	229568296	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:59
chr1	229568297	.	A	.	.	PASS	END=229568301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:59
chr1	229568302	.	C	.	.	PASS	END=229568313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:59
chr1	229568314	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:6:60
chr1	229568315	.	C	.	.	PASS	END=229568318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	229568319	.	G	.	.	PASS	END=229568324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	229568325	.	G	.	.	PASS	END=229568336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	229568337	.	G	.	.	PASS	END=229568348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr1	229568349	.	C	.	.	PASS	END=229568350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:60
chr1	229568351	.	C	.	.	PASS	END=229568365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	229568366	.	C	.	.	PASS	END=229568396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	229568397	.	C	.	.	PASS	END=229568424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	229568425	.	G	.	.	PASS	END=229568440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	229568441	.	G	.	.	PASS	END=229568556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	229568557	.	A	.	.	PASS	END=229568588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	229568589	.	C	.	.	PASS	END=229568627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	229568628	.	C	.	.	PASS	END=229568678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	229568683	.	G	.	.	PASS	END=229568718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	229568719	.	G	.	.	PASS	END=229568763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	229568764	.	G	.	.	PASS	END=229568797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	229568798	.	C	.	.	PASS	END=229568900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	229568901	.	G	.	.	PASS	END=229568913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	229577128	.	G	.	.	LowGQX	END=229577195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229577196	.	G	.	.	LowGQX	.	GT	./.
chr1	229577197	.	A	.	.	LowGQX	END=229577223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229577224	.	A	.	.	LowGQX	END=229577227	GT	./.
chr1	229577649	.	A	.	.	LowGQX	END=229577828	GT	./.
chr1	229580656	.	C	.	.	LowGQX	END=229580755	GT	./.
chr1	229584796	.	T	.	.	LowGQX	END=229584955	GT	./.
chr1	229586263	.	T	.	.	LowGQX	END=229586362	GT	./.
chr1	229588270	.	A	.	.	LowGQX	END=229588392	GT	./.
chr1	229593906	.	A	.	.	LowGQX	END=229593943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229593944	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	229593945	.	T	.	.	LowGQX	END=229593971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229593972	.	G	.	.	LowGQX	.	GT	./.
chr1	229593973	.	C	.	.	LowGQX	END=229593980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229593981	.	G	.	.	LowGQX	END=229593984	GT	./.
chr1	229593985	.	T	.	.	LowGQX	END=229594005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229594006	.	G	.	.	LowGQX	END=229594008	GT	./.
chr1	229594009	.	T	.	.	LowGQX	END=229594016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229594017	.	T	.	.	LowGQX	.	GT	./.
chr1	229594018	.	G	.	.	LowGQX	END=229594028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229594029	.	A	.	.	LowGQX	.	GT	./.
chr1	229594030	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229594031	.	G	.	.	LowGQX	END=229594035	GT	./.
chr1	229594036	.	G	.	.	LowGQX	END=229594038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229594039	.	T	.	.	LowGQX	.	GT	./.
chr1	229594040	.	G	.	.	LowGQX	END=229594045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229596356	.	A	.	.	LowGQX	END=229596518	GT	./.
chr1	229599288	.	A	.	.	LowGQX	END=229599425	GT	./.
chr1	229600369	.	A	.	.	LowGQX	END=229600624	GT	./.
chr1	229601165	.	A	.	.	LowGQX	END=229601324	GT	./.
chr1	229602379	.	A	.	.	LowGQX	END=229602475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	229602476	.	A	.	.	LowGQX	END=229602505	GT	./.
chr1	229606325	.	A	.	.	LowGQX	END=229606553	GT	./.
chr1	229611383	.	A	.	.	LowGQX	END=229611482	GT	./.
chr1	229613342	.	A	.	.	LowGQX	END=229613509	GT	./.
chr1	229619797	.	A	.	.	LowGQX	END=229619896	GT	./.
chr1	229622116	.	A	.	.	LowGQX	END=229622305	GT	./.
chr1	229623181	.	A	.	.	LowGQX	END=229623362	GT	./.
chr1	229625700	.	A	.	.	LowGQX	END=229625851	GT	./.
chr1	229631228	.	A	.	.	LowGQX	END=229631327	GT	./.
chr1	229631637	.	A	.	.	LowGQX	END=229631796	GT	./.
chr1	229633881	.	A	.	.	LowGQX	END=229633900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229633901	.	A	.	.	LowGQX	END=229634055	GT	./.
chr1	229634904	.	T	.	.	LowGQX	END=229634996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	229634997	.	T	.	.	LowGQX	END=229635003	GT	./.
chr1	229635429	.	A	.	.	LowGQX	END=229635449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229635450	.	C	.	.	LowGQX	.	GT	./.
chr1	229635451	.	T	.	.	LowGQX	END=229635454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229635455	.	A	.	.	LowGQX	.	GT	./.
chr1	229635456	.	G	.	.	LowGQX	END=229635481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229635482	.	A	.	.	LowGQX	.	GT	./.
chr1	229635483	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229635484	.	C	.	.	LowGQX	.	GT	./.
chr1	229635485	.	C	.	.	LowGQX	END=229635507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229635508	.	C	.	.	LowGQX	.	GT	./.
chr1	229635509	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229635510	.	A	.	.	LowGQX	.	GT	./.
chr1	229635511	.	G	.	.	LowGQX	END=229635527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229635528	.	A	.	.	LowGQX	.	GT	./.
chr1	229635529	.	T	.	.	LowGQX	END=229635532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229635533	.	T	.	.	LowGQX	.	GT	./.
chr1	229635534	.	C	.	.	LowGQX	END=229635543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229635544	.	T	.	.	LowGQX	.	GT	./.
chr1	229635545	.	G	.	.	LowGQX	END=229635546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229635547	.	C	.	.	LowGQX	.	GT	./.
chr1	229635548	.	A	.	.	LowGQX	END=229635550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229635551	.	C	.	.	LowGQX	.	GT	./.
chr1	229635552	.	A	.	.	LowGQX	END=229635567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229636501	.	A	.	.	LowGQX	END=229636612	GT	./.
chr1	229637744	.	A	.	.	LowGQX	END=229637851	GT	./.
chr1	229641785	.	A	.	.	LowGQX	END=229641907	GT	./.
chr1	229643813	.	A	.	.	LowGQX	END=229644012	GT	./.
chr1	229653924	.	C	.	.	LowGQX	END=229654051	GT	./.
chr1	229654052	.	A	.	.	LowGQX	END=229654159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	229654556	.	C	.	.	LowGQX	END=229654655	GT	./.
chr1	229657311	.	A	.	.	LowGQX	END=229657326	GT	./.
chr1	229657327	.	C	.	.	LowGQX	END=229657347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229657348	.	A	.	.	LowGQX	.	GT	./.
chr1	229657349	.	G	.	.	LowGQX	END=229657410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229661681	.	A	.	.	LowGQX	END=229661865	GT	./.
chr1	229662966	.	C	.	.	LowGQX	END=229662967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229662968	.	C	.	.	LowGQX	.	GT	./.
chr1	229662969	.	T	.	.	LowGQX	END=229662982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229662983	.	A	.	.	LowGQX	.	GT	./.
chr1	229662984	.	C	.	.	LowGQX	END=229662986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229662987	.	T	.	.	LowGQX	.	GT	./.
chr1	229662988	.	C	.	.	LowGQX	END=229663006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229663007	.	C	.	.	LowGQX	END=229663008	GT	./.
chr1	229663009	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229663010	.	A	.	.	LowGQX	.	GT	./.
chr1	229663011	.	C	.	.	LowGQX	END=229663013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229663014	.	G	.	.	LowGQX	.	GT	./.
chr1	229663015	.	G	.	.	LowGQX	END=229663017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229663018	.	T	.	.	LowGQX	.	GT	./.
chr1	229663019	.	A	.	.	LowGQX	END=229663026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229663027	.	G	.	.	LowGQX	END=229663028	GT	./.
chr1	229663029	.	T	.	.	LowGQX	END=229663030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229663031	.	T	.	.	LowGQX	.	GT	./.
chr1	229663032	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229663033	.	A	.	.	LowGQX	.	GT	./.
chr1	229663034	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229663035	.	G	.	.	LowGQX	.	GT	./.
chr1	229663036	.	G	.	.	LowGQX	END=229663043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229663044	.	G	.	.	LowGQX	.	GT	./.
chr1	229663045	.	A	.	.	LowGQX	END=229663051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	229663052	.	G	.	.	LowGQX	.	GT	./.
chr1	229663053	.	T	.	.	LowGQX	END=229663055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	229663056	.	C	.	.	LowGQX	.	GT	./.
chr1	229663057	.	T	.	.	LowGQX	END=229663061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	229663062	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	229663063	.	A	.	.	LowGQX	END=229663064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	229663065	.	A	.	.	LowGQX	.	GT	./.
chr1	229665944	.	A	.	.	LowGQX	END=229666157	GT	./.
chr1	229667381	.	A	.	.	LowGQX	END=229667476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229667477	.	A	.	.	LowGQX	.	GT	./.
chr1	229667478	.	C	.	.	LowGQX	END=229667480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229675161	.	A	.	.	LowGQX	END=229675340	GT	./.
chr1	229676351	.	A	.	.	LowGQX	END=229676501	GT	./.
chr1	229677982	.	A	.	.	LowGQX	END=229678082	GT	./.
chr1	229678083	.	C	.	.	LowGQX	END=229678102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229678103	.	T	.	.	LowGQX	END=229678120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:35
chr1	229683244	.	A	.	.	LowGQX	END=229683326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	229683327	.	T	.	.	LowGQX	END=229683450	GT	./.
chr1	229684979	.	A	.	.	LowGQX	END=229685046	GT	./.
chr1	229685047	.	G	.	.	LowGQX	END=229685104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229685105	.	G	.	.	LowGQX	.	GT	./.
chr1	229685106	.	A	.	.	LowGQX	END=229685127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229685128	.	A	.	.	LowGQX	.	GT	./.
chr1	229685129	.	G	.	.	LowGQX	END=229685139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229685140	.	A	.	.	LowGQX	.	GT	./.
chr1	229685141	.	C	.	.	LowGQX	END=229685179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229685180	.	A	.	.	LowGQX	.	GT	./.
chr1	229685181	.	G	.	.	LowGQX	END=229685183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229693870	.	G	.	.	LowGQX	END=229694401	GT	./.
chr1	229730042	.	A	.	.	LowGQX	END=229730090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229730091	.	T	.	.	LowGQX	END=229730153	GT	./.
chr1	229730154	.	C	.	.	LowGQX	END=229730376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229730377	.	G	.	.	LowGQX	END=229730843	GT	./.
chr1	229737934	.	A	.	.	LowGQX	END=229738027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229738028	.	T	.	.	LowGQX	END=229738428	GT	./.
chr1	229738429	.	T	.	.	LowGQX	END=229738619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229738620	.	A	.	.	LowGQX	END=229738668	GT	./.
chr1	229745851	.	A	.	.	LowGQX	END=229745959	GT	./.
chr1	229749974	.	G	.	.	LowGQX	END=229750231	GT	./.
chr1	229763379	.	C	.	.	LowGQX	END=229763508	GT	./.
chr1	229768014	.	A	.	.	LowGQX	END=229768213	GT	./.
chr1	229770662	.	A	.	.	LowGQX	END=229771275	GT	./.
chr1	229771276	.	T	.	.	LowGQX	END=229771444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229771445	.	A	.	.	LowGQX	END=229771944	GT	./.
chr1	229771945	.	T	.	.	LowGQX	END=229772095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229772096	.	T	.	.	LowGQX	.	GT	./.
chr1	229772097	.	C	.	.	LowGQX	END=229772138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229772139	.	A	.	.	LowGQX	END=229772566	GT	./.
chr1	229772567	.	C	.	.	LowGQX	END=229772638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229772639	.	G	.	.	LowGQX	.	GT	./.
chr1	229772640	.	A	.	.	LowGQX	END=229772677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229772678	.	G	.	.	LowGQX	.	GT	./.
chr1	229772679	.	C	.	.	LowGQX	END=229772696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	229772697	.	A	.	.	LowGQX	.	GT	./.
chr1	229772698	.	A	.	.	LowGQX	END=229772724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229772725	.	G	.	.	LowGQX	.	GT	./.
chr1	229772726	.	A	.	.	LowGQX	END=229772816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229772817	.	C	.	.	LowGQX	.	GT	./.
chr1	229772818	.	T	.	.	LowGQX	END=229772871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	229772872	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	229772873	.	T	.	.	LowGQX	END=229772875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	229772876	.	C	.	.	LowGQX	.	GT	./.
chr1	229772877	.	C	.	.	LowGQX	END=229772905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229772906	.	T	.	.	LowGQX	END=229773059	GT	./.
chr1	229773060	.	G	.	.	LowGQX	END=229773091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229773092	.	C	.	.	LowGQX	.	GT	./.
chr1	229773093	.	A	.	.	LowGQX	END=229773131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229773132	.	G	.	.	LowGQX	.	GT	./.
chr1	229773133	.	G	.	.	LowGQX	END=229773139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229773140	.	C	.	.	LowGQX	.	GT	./.
chr1	229773141	.	C	.	.	LowGQX	END=229773219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229773220	.	A	.	.	LowGQX	.	GT	./.
chr1	229773221	.	A	.	.	LowGQX	END=229773222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229773223	.	G	.	.	LowGQX	.	GT	./.
chr1	229773224	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229773225	.	G	.	.	LowGQX	.	GT	./.
chr1	229773226	.	A	.	.	LowGQX	END=229773232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229773233	.	C	.	.	LowGQX	.	GT	./.
chr1	229773234	.	T	.	.	LowGQX	END=229773259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229773260	.	G	.	.	LowGQX	.	GT	./.
chr1	229773261	.	T	.	.	LowGQX	END=229773262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229773263	.	G	.	.	LowGQX	.	GT	./.
chr1	229773264	.	T	.	.	LowGQX	END=229773275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229773276	.	G	.	.	LowGQX	.	GT	./.
chr1	229773277	.	G	.	.	LowGQX	END=229773286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229773287	.	C	.	.	LowGQX	.	GT	./.
chr1	229773288	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229773289	.	T	.	.	LowGQX	END=229773996	GT	./.
chr1	229779238	.	C	.	.	LowGQX	END=229779442	GT	./.
chr1	229781604	.	A	.	.	LowGQX	END=229781684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	229781685	.	G	.	.	LowGQX	.	GT	./.
chr1	229781686	.	T	.	.	LowGQX	END=229781718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	229783255	.	A	.	.	LowGQX	END=229783501	GT	./.
chr1	229786976	.	T	.	.	LowGQX	END=229787075	GT	./.
chr1	229789994	.	A	.	.	LowGQX	END=229790137	GT	./.
chr1	229794845	.	A	.	.	LowGQX	END=229795046	GT	./.
chr1	230193770	.	T	.	.	LowGQX	END=230193776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230193777	.	T	.	.	LowGQX	.	GT	./.
chr1	230193778	.	G	.	.	LowGQX	END=230193828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230193829	.	A	.	.	LowGQX	.	GT	./.
chr1	230193830	.	G	.	.	LowGQX	END=230193842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230193843	.	C	.	.	LowGQX	.	GT	./.
chr1	230193844	.	T	.	.	LowGQX	END=230193851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230193852	.	A	.	.	LowGQX	.	GT	./.
chr1	230193853	.	C	.	.	LowGQX	END=230193860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230193861	.	C	.	.	LowGQX	.	GT	./.
chr1	230193862	.	T	.	.	LowGQX	END=230193869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230202985	.	A	.	.	LowGQX	END=230203024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	230203025	.	A	.	.	LowGQX	END=230203040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	230203041	.	C	.	.	LowGQX	END=230203050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:60
chr1	230203051	.	G	.	.	LowGQX	END=230203081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr1	230203082	.	A	.	.	LowGQX	END=230203088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:60
chr1	230203089	.	A	.	.	LowGQX	END=230203097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:15:60
chr1	230203098	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:12:60
chr1	230203099	.	C	.	.	LowGQX	END=230203111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	230203112	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	230203113	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	230203114	.	T	.	.	LowGQX	END=230203118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	230203119	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:60
chr1	230203120	.	G	.	.	LowGQX	END=230203154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	230203155	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	230313961	.	T	.	.	PASS	END=230314045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	230314046	.	C	.	.	PASS	END=230314060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	230338881	.	A	.	.	PASS	END=230338900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	230338901	.	A	.	.	PASS	END=230339005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:86:60
chr1	230339006	.	A	.	.	PASS	END=230339024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	230339025	.	C	.	.	PASS	END=230339038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	230371758	.	A	.	.	PASS	END=230371849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	230371850	.	C	.	.	PASS	END=230371860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	230372083	.	T	.	.	PASS	END=230372137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	230372138	.	C	.	.	PASS	END=230372179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	230372180	.	C	.	.	PASS	END=230372182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	230372389	.	T	.	.	PASS	END=230372416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	230372417	.	G	.	.	PASS	END=230372488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	230379050	.	A	.	.	PASS	END=230379140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:281:99:60
chr1	230379141	.	T	.	.	PASS	END=230379163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr1	230379164	.	G	.	.	PASS	END=230379196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	230379197	.	G	.	.	PASS	END=230379219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	230381803	.	T	.	.	PASS	END=230381881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	230381882	.	C	.	.	PASS	END=230381902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	230384924	.	T	.	.	PASS	END=230384969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	230384970	.	G	A	1157.77	PASS	BaseQRankSum=1.162;DP=115;Dels=0.00;FS=0.733;HRun=0;HaplotypeScore=10.4586;MQ=60;MQ0=0;MQRankSum=1.083;QD=10.07;ReadPosRankSum=1.151;SB=-705.85	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:60,55:115:99:1188,0,1376:60:99:0.478
chr1	230384971	.	C	.	.	PASS	END=230385016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	230385017	.	A	.	.	PASS	END=230385023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	230386145	.	C	.	.	PASS	END=230386152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	230386153	.	C	.	.	PASS	END=230386175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	230386176	.	T	.	.	PASS	END=230386184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	230386185	.	T	.	.	PASS	END=230386186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:54:60
chr1	230386187	.	C	.	.	PASS	END=230386191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:60
chr1	230386192	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:57:60
chr1	230386193	.	G	.	.	PASS	END=230386205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr1	230386206	.	C	.	.	PASS	END=230386220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr1	230386221	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr1	230386222	.	G	.	.	PASS	END=230386298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	230386299	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:36:60
chr1	230386300	.	A	.	.	PASS	END=230386305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	230386306	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:39:60
chr1	230386307	.	G	.	.	PASS	END=230386308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	230390962	.	A	.	.	PASS	END=230391072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	230391073	.	T	.	.	PASS	END=230391092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	230398316	.	T	.	.	PASS	END=230398379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	230398380	.	G	.	.	PASS	END=230398401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	230398402	.	C	.	.	PASS	END=230398415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	230398660	.	T	.	.	PASS	END=230398754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	230398755	.	A	.	.	PASS	END=230398759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	230400985	.	A	.	.	PASS	END=230401087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	230401088	.	A	.	.	PASS	END=230401107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:87:60
chr1	230401108	.	A	.	.	PASS	END=230401115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	230410189	.	A	.	.	PASS	END=230410235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	230410236	.	T	.	.	PASS	END=230410303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	230410304	.	C	.	.	PASS	END=230410312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	230415047	.	A	.	.	PASS	END=230415070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	230415071	.	A	.	.	PASS	END=230415182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	230415183	.	C	.	.	PASS	END=230415206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	230415617	.	T	.	.	LowGQX	.	GT	./.
chr1	230415618	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415619	.	T	.	.	LowGQX	.	GT	./.
chr1	230415620	.	C	.	.	LowGQX	END=230415624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415625	.	T	.	.	LowGQX	.	GT	./.
chr1	230415626	.	T	.	.	LowGQX	END=230415628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415629	.	A	.	.	LowGQX	.	GT	./.
chr1	230415630	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415631	.	C	.	.	LowGQX	.	GT	./.
chr1	230415632	.	C	.	.	LowGQX	END=230415639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415640	.	A	.	.	LowGQX	.	GT	./.
chr1	230415641	.	T	.	.	LowGQX	END=230415644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415645	.	G	.	.	LowGQX	.	GT	./.
chr1	230415646	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415647	.	A	.	.	LowGQX	END=230415648	GT	./.
chr1	230415649	.	G	.	.	LowGQX	END=230415650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415651	.	T	.	.	LowGQX	.	GT	./.
chr1	230415652	.	T	.	.	LowGQX	END=230415653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415654	.	C	.	.	LowGQX	END=230415657	GT	./.
chr1	230415658	.	A	.	.	LowGQX	END=230415660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415661	.	G	.	.	LowGQX	END=230415662	GT	./.
chr1	230415663	.	C	.	.	LowGQX	END=230415669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415670	.	T	.	.	LowGQX	.	GT	./.
chr1	230415671	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415672	.	T	.	.	LowGQX	.	GT	./.
chr1	230415673	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415674	.	A	.	.	LowGQX	END=230415675	GT	./.
chr1	230415676	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415677	.	T	.	.	LowGQX	END=230415678	GT	./.
chr1	230415679	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415680	.	C	.	.	LowGQX	END=230415681	GT	./.
chr1	230415682	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	230415683	.	G	.	.	LowGQX	END=230415685	GT	./.
chr1	230415686	.	T	.	.	LowGQX	END=230415688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415689	.	G	.	.	LowGQX	.	GT	./.
chr1	230415690	.	T	.	.	LowGQX	END=230415696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415697	.	T	.	.	LowGQX	.	GT	./.
chr1	230415698	.	C	.	.	LowGQX	END=230415700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415701	.	T	.	.	LowGQX	.	GT	./.
chr1	230415702	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415703	.	T	.	.	LowGQX	.	GT	./.
chr1	230415704	.	C	.	.	LowGQX	END=230415707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415708	.	G	.	.	LowGQX	END=230415709	GT	./.
chr1	230415710	.	T	.	.	LowGQX	END=230415713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415714	.	C	.	.	LowGQX	END=230415716	GT	./.
chr1	230415717	.	T	.	.	LowGQX	END=230415718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415719	.	C	.	.	LowGQX	END=230415722	GT	./.
chr1	230415723	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415724	.	G	.	.	LowGQX	.	GT	./.
chr1	230415725	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415726	.	G	.	.	LowGQX	.	GT	./.
chr1	230415727	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415728	.	C	.	.	LowGQX	END=230415729	GT	./.
chr1	230415730	.	T	.	.	LowGQX	END=230415731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230415732	.	C	.	.	LowGQX	END=230415733	GT	./.
chr1	230415734	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230459169	.	C	.	.	LowGQX	END=230459368	GT	./.
chr1	230461054	.	A	.	.	LowGQX	END=230461163	GT	./.
chr1	230468588	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	230468589	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	230468590	.	C	.	.	LowGQX	END=230468624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	230468625	.	C	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	230468626	.	G	.	.	LowGQX	END=230468663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	230468664	.	T	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:4:3.01:60:3
chr1	230468665	.	T	.	.	LowGQX	END=230468720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230468721	.	A	.	.	LowGQX	END=230468789	GT	./.
chr1	230472852	.	A	.	.	LowGQX	END=230473036	GT	./.
chr1	230486702	.	A	.	.	LowGQX	END=230486743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	230486744	.	A	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr1	230486745	.	G	.	.	LowGQX	END=230486831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230486832	.	G	.	.	LowGQX	END=230486833	GT	./.
chr1	230486834	.	A	.	.	LowGQX	END=230486837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230486838	.	C	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	230486839	.	C	.	.	LowGQX	END=230486840	GT	./.
chr1	230492638	.	A	.	.	LowGQX	.	GT	./.
chr1	230492639	.	C	.	.	LowGQX	END=230492640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	230492641	.	T	.	.	LowGQX	.	GT	./.
chr1	230492642	.	G	.	.	LowGQX	END=230492644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	230492645	.	T	.	.	LowGQX	.	GT	./.
chr1	230492646	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	230492647	.	T	.	.	LowGQX	.	GT	./.
chr1	230492648	.	G	.	.	LowGQX	END=230492700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492701	.	T	.	.	LowGQX	.	GT	./.
chr1	230492702	.	G	.	.	LowGQX	END=230492705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492706	.	C	.	.	LowGQX	.	GT	./.
chr1	230492707	.	T	.	.	LowGQX	END=230492709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492710	.	T	.	.	LowGQX	.	GT	./.
chr1	230492711	.	A	.	.	LowGQX	END=230492714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492715	.	C	.	.	LowGQX	.	GT	./.
chr1	230492716	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492717	.	C	.	.	LowGQX	.	GT	./.
chr1	230492718	.	G	.	.	LowGQX	END=230492722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492723	.	T	.	.	LowGQX	END=230492724	GT	./.
chr1	230492725	.	G	.	.	LowGQX	END=230492734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492735	.	A	.	.	LowGQX	.	GT	./.
chr1	230492736	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492737	.	C	.	.	LowGQX	.	GT	./.
chr1	230492738	.	G	.	.	LowGQX	END=230492742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492743	.	G	.	.	LowGQX	END=230492780	GT	./.
chr1	230492781	.	G	.	.	LowGQX	END=230492787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492788	.	C	.	.	LowGQX	.	GT	./.
chr1	230492789	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492790	.	C	.	.	LowGQX	END=230492791	GT	./.
chr1	230492792	.	T	.	.	LowGQX	END=230492801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492802	.	G	.	.	LowGQX	.	GT	./.
chr1	230492803	.	A	.	.	LowGQX	END=230492839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492840	.	T	.	.	LowGQX	.	GT	./.
chr1	230492841	.	G	.	.	LowGQX	END=230492844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492845	.	A	.	.	LowGQX	.	GT	./.
chr1	230492846	.	C	.	.	LowGQX	END=230492860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492861	.	A	.	.	LowGQX	.	GT	./.
chr1	230492862	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492863	.	A	.	.	LowGQX	.	GT	./.
chr1	230492864	.	T	.	.	LowGQX	END=230492931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492932	.	T	.	.	LowGQX	.	GT	./.
chr1	230492933	.	C	.	.	LowGQX	END=230492946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492947	.	T	.	.	LowGQX	.	GT	./.
chr1	230492948	.	C	.	.	LowGQX	END=230492976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492977	.	T	.	.	LowGQX	.	GT	./.
chr1	230492978	.	G	.	.	LowGQX	END=230492983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230492984	.	C	.	.	LowGQX	.	GT	./.
chr1	230492985	.	C	.	.	LowGQX	END=230493043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230493044	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	230493045	.	G	.	.	LowGQX	END=230493069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	230498017	.	A	.	.	LowGQX	END=230498125	GT	./.
chr1	230503687	.	A	.	.	LowGQX	END=230503710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230503711	.	G	.	.	LowGQX	.	GT	./.
chr1	230503712	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230503713	.	T	.	.	LowGQX	.	GT	./.
chr1	230503714	.	C	.	.	LowGQX	END=230503717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230503718	.	C	.	.	LowGQX	.	GT	./.
chr1	230503719	.	A	.	.	LowGQX	END=230503732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230503733	.	G	.	.	LowGQX	END=230503892	GT	./.
chr1	230513171	.	G	.	.	LowGQX	END=230513369	GT	./.
chr1	230778339	.	C	.	.	LowGQX	END=230778438	GT	./.
chr1	230795178	.	A	.	.	LowGQX	END=230795373	GT	./.
chr1	230796487	.	A	.	.	LowGQX	END=230796586	GT	./.
chr1	230798878	.	C	.	.	LowGQX	END=230798977	GT	./.
chr1	230800228	.	A	.	.	LowGQX	END=230800335	GT	./.
chr1	230804420	.	A	.	.	LowGQX	END=230804532	GT	./.
chr1	230805100	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230805101	.	G	.	.	LowGQX	END=230805102	GT	./.
chr1	230805103	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230805104	.	T	.	.	LowGQX	END=230805105	GT	./.
chr1	230805106	.	T	.	.	LowGQX	END=230805108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230805109	.	C	.	.	LowGQX	END=230805177	GT	./.
chr1	230805178	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230805179	.	C	.	.	LowGQX	.	GT	./.
chr1	230805180	.	G	.	.	LowGQX	END=230805183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230805184	.	T	.	.	LowGQX	.	GT	./.
chr1	230805185	.	A	.	.	LowGQX	END=230805196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230805197	.	C	.	.	LowGQX	.	GT	./.
chr1	230805198	.	T	.	.	LowGQX	END=230805201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230805202	.	G	.	.	LowGQX	.	GT	./.
chr1	230805203	.	G	.	.	LowGQX	END=230805208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230805209	.	C	.	.	LowGQX	.	GT	./.
chr1	230805210	.	G	.	.	LowGQX	END=230805218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230805219	.	G	.	.	LowGQX	.	GT	./.
chr1	230805220	.	A	.	.	LowGQX	END=230805223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230805224	.	G	.	.	LowGQX	.	GT	./.
chr1	230805225	.	A	.	.	LowGQX	END=230805234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230805235	.	C	.	.	LowGQX	.	GT	./.
chr1	230805236	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230805237	.	G	.	.	LowGQX	.	GT	./.
chr1	230805238	.	A	.	.	LowGQX	END=230805254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230805255	.	G	.	.	LowGQX	END=230805256	GT	./.
chr1	230805257	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230805258	.	C	.	.	LowGQX	.	GT	./.
chr1	230805259	.	T	.	.	LowGQX	END=230805260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230805261	.	G	.	.	LowGQX	END=230805263	GT	./.
chr1	230805264	.	A	.	.	LowGQX	END=230805267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230805268	.	C	.	.	LowGQX	.	GT	./.
chr1	230805269	.	A	.	.	LowGQX	END=230805278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230805279	.	G	.	.	LowGQX	.	GT	./.
chr1	230805280	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230805281	.	G	.	.	LowGQX	.	GT	./.
chr1	230805282	.	G	.	.	LowGQX	END=230805283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230807260	.	A	.	.	LowGQX	END=230807282	GT	./.
chr1	230807283	.	G	.	.	LowGQX	END=230807284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230807285	.	A	.	.	LowGQX	.	GT	./.
chr1	230807286	.	T	.	.	LowGQX	END=230807329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230807330	.	G	.	.	LowGQX	END=230807331	GT	./.
chr1	230807332	.	T	.	.	LowGQX	END=230807388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230810742	.	A	.	.	LowGQX	END=230810872	GT	./.
chr1	230814427	.	T	.	.	LowGQX	END=230814526	GT	./.
chr1	230814657	.	A	.	.	LowGQX	END=230814800	GT	./.
chr1	230819301	.	C	.	.	LowGQX	END=230819400	GT	./.
chr1	230820829	.	A	.	.	LowGQX	END=230820984	GT	./.
chr1	230822679	.	A	.	.	LowGQX	END=230822880	GT	./.
chr1	230823745	.	A	.	.	LowGQX	END=230823903	GT	./.
chr1	230824164	.	A	.	.	LowGQX	END=230824310	GT	./.
chr1	230825758	.	A	.	.	LowGQX	END=230825779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	230825780	.	C	.	.	LowGQX	.	GT	./.
chr1	230825781	.	T	.	.	LowGQX	END=230825788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230825789	.	G	.	.	LowGQX	.	GT	./.
chr1	230825790	.	G	.	.	LowGQX	END=230825802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230825803	.	A	.	.	LowGQX	END=230825901	GT	./.
chr1	230827128	.	A	.	.	LowGQX	END=230827312	GT	./.
chr1	230829036	.	A	.	.	LowGQX	END=230829141	GT	./.
chr1	230838836	.	A	.	.	PASS	END=230838850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	230838851	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:45:60
chr1	230838852	.	G	.	.	PASS	END=230838857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	230838858	.	G	.	.	PASS	END=230838867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	230838868	.	G	.	.	PASS	END=230838877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	230838878	.	G	.	.	PASS	END=230838890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	230838891	.	G	.	.	PASS	END=230838916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	230838917	.	G	.	.	PASS	END=230838956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	230838957	.	G	.	.	PASS	END=230838980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	230838981	.	G	.	.	PASS	END=230839075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	230839076	.	C	.	.	PASS	END=230839114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	230839115	.	C	.	.	PASS	END=230839126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	230839888	.	C	.	.	PASS	END=230839919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	230839920	.	G	.	.	PASS	END=230839933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	230839934	.	C	.	.	PASS	END=230839983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	230839984	.	C	.	.	PASS	END=230840066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:60
chr1	230840067	.	T	.	.	PASS	END=230840088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	230840089	.	G	.	.	PASS	END=230840091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	230840092	.	A	.	.	PASS	END=230840095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	230840096	.	T	C	2233.22	PASS	BaseQRankSum=2.976;DP=137;Dels=0.00;FS=7.674;HRun=0;HaplotypeScore=10.4161;MQ=60;MQ0=0;MQRankSum=-0.672;QD=16.30;ReadPosRankSum=2.112;SB=-296.36	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:63,73:137:99:2263,0,1502:60:99:0.537
chr1	230840097	.	G	.	.	PASS	END=230840111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	230840112	.	C	.	.	PASS	END=230840132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	230840133	.	C	.	.	PASS	END=230840134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	230841628	.	G	.	.	PASS	END=230841641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	230841642	.	G	.	.	PASS	END=230841680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	230841681	.	G	.	.	PASS	END=230841686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	230841687	.	T	C	3328.02	PASS	DP=112;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=33.3303;MQ=60;MQ0=0;QD=29.71;SB=-440.83	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,111:112:99:3328,265,0:60:99:1.000
chr1	230841688	.	A	.	.	PASS	END=230841727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	230841728	.	G	.	.	PASS	END=230841751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	230841752	.	A	.	.	PASS	END=230841869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	230841870	.	G	.	.	PASS	END=230841889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	230841890	.	T	.	.	PASS	END=230841907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	230841908	.	C	.	.	PASS	END=230841942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	230841943	.	T	.	.	PASS	END=230841990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	230841991	.	A	.	.	PASS	END=230841997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	230845690	.	A	.	.	PASS	END=230845710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	230845711	.	G	.	.	PASS	END=230845741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	230845742	.	T	.	.	PASS	END=230845763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	230845764	.	A	.	.	PASS	END=230845786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	230845787	.	G	.	.	PASS	END=230845793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	230845794	.	A	G	1803.08	PASS	BaseQRankSum=-0.073;DP=142;Dels=0.00;FS=3.580;HRun=0;HaplotypeScore=5.7319;MQ=60;MQ0=0;MQRankSum=-1.036;QD=12.70;ReadPosRankSum=-0.415;SB=-465.96	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:70,70:142:99:1833,0,1820:60:99:0.500
chr1	230845795	.	T	.	.	PASS	END=230845831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	230845832	.	C	.	.	PASS	END=230845883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	230845884	.	G	.	.	PASS	END=230846006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr1	230846007	.	G	.	.	PASS	END=230846084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:297:99:60
chr1	230846085	.	C	.	.	PASS	END=230846140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:395:99:60
chr1	230846141	.	G	.	.	PASS	END=230846248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:476:99:60
chr1	230846249	.	A	.	.	PASS	END=230846362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:510:99:60
chr1	230846363	.	A	.	.	PASS	END=230846389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:388:99:60
chr1	230846390	.	A	.	.	PASS	END=230846400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:321:99:60
chr1	230846401	.	T	.	.	PASS	END=230846438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	230846439	.	T	.	.	PASS	END=230846478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	230846479	.	G	.	.	PASS	END=230846491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	230846492	.	C	.	.	PASS	END=230846501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	230846502	.	G	.	.	PASS	END=230846522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	230846523	.	A	.	.	PASS	END=230846552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	230846553	.	A	.	.	PASS	END=230846577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	230846578	.	G	.	.	PASS	END=230846581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	230846582	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:69:60
chr1	230846583	.	G	.	.	PASS	END=230846585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	230846586	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr1	230846587	.	G	.	.	PASS	END=230846588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr1	230846589	.	T	.	.	PASS	END=230846590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	230846591	.	C	.	.	PASS	END=230846593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:90:60
chr1	230846594	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:54:60
chr1	230846595	.	A	.	.	PASS	END=230846609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:72:60
chr1	230846610	.	A	.	.	PASS	END=230846621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	230846622	.	G	.	.	PASS	END=230846623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr1	230846624	.	G	.	.	PASS	END=230846629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	230846630	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:60
chr1	230846631	.	G	.	.	PASS	END=230846632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	230846633	.	T	.	.	PASS	END=230846634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	230846635	.	A	.	.	PASS	END=230846640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	230846641	.	T	.	.	PASS	END=230846647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	230883241	.	C	.	.	LowGQX	END=230883457	GT	./.
chr1	230891011	.	C	.	.	LowGQX	END=230891023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230891024	.	C	.	.	LowGQX	.	GT	./.
chr1	230891025	.	T	.	.	LowGQX	END=230891041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230891042	.	G	.	.	LowGQX	.	GT	./.
chr1	230891043	.	C	.	.	LowGQX	END=230891047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230891048	.	C	.	.	LowGQX	.	GT	./.
chr1	230891049	.	A	.	.	LowGQX	END=230891051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230891052	.	C	.	.	LowGQX	.	GT	./.
chr1	230891053	.	C	.	.	LowGQX	END=230891093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230891094	.	A	.	.	LowGQX	.	GT	./.
chr1	230891095	.	A	.	.	LowGQX	END=230891101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230891102	.	A	.	.	LowGQX	.	GT	./.
chr1	230891103	.	A	.	.	LowGQX	END=230891153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230891154	.	T	.	.	LowGQX	END=230891156	GT	./.
chr1	230891157	.	G	.	.	LowGQX	END=230891160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230891161	.	A	.	.	LowGQX	END=230891167	GT	./.
chr1	230895256	.	A	.	.	LowGQX	END=230895378	GT	./.
chr1	230898397	.	A	.	.	LowGQX	END=230898534	GT	./.
chr1	230903285	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230903286	.	G	.	.	LowGQX	END=230903288	GT	./.
chr1	230903289	.	T	.	.	LowGQX	END=230903290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230903291	.	A	.	.	LowGQX	.	GT	./.
chr1	230903292	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230903293	.	T	.	.	LowGQX	END=230903306	GT	./.
chr1	230903307	.	C	.	.	LowGQX	END=230903326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230903327	.	A	.	.	LowGQX	END=230903347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	230903348	.	A	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	230903349	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	230903350	.	T	C	31.43	LowGQ;LowGQX	BaseQRankSum=0.358;DP=5;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=0.358;QD=6.29;ReadPosRankSum=0.358;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,3:5:27.11:61,0,27:60:27:0.600
chr1	230903351	.	G	.	.	LowGQX	END=230903391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	230903392	.	G	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	230903393	.	A	.	.	LowGQX	END=230903456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	230903457	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	230904918	.	T	.	.	LowGQX	END=230905017	GT	./.
chr1	230907753	.	C	.	.	LowGQX	END=230907852	GT	./.
chr1	230910289	.	T	.	.	LowGQX	END=230910387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230910388	.	T	.	.	LowGQX	.	GT	./.
chr1	230914717	.	A	.	.	LowGQX	END=230914881	GT	./.
chr1	230915923	.	A	.	.	LowGQX	END=230916084	GT	./.
chr1	230916244	.	A	.	.	LowGQX	END=230916294	GT	./.
chr1	230916295	.	C	.	.	LowGQX	END=230916351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230916352	.	A	.	.	LowGQX	.	GT	./.
chr1	230916353	.	G	.	.	LowGQX	END=230916367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230916368	.	G	.	.	LowGQX	.	GT	./.
chr1	230916369	.	T	.	.	LowGQX	END=230916408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230916409	.	C	.	.	LowGQX	.	GT	./.
chr1	230916410	.	T	.	.	LowGQX	END=230916411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230916412	.	A	.	.	LowGQX	END=230916413	GT	./.
chr1	230916414	.	T	.	.	LowGQX	END=230916446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230916447	.	A	.	.	LowGQX	.	GT	./.
chr1	230916448	.	T	.	.	LowGQX	END=230916450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230916451	.	C	.	.	LowGQX	.	GT	./.
chr1	230916452	.	C	.	.	LowGQX	END=230916456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230921696	.	A	.	.	LowGQX	END=230921785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230921786	.	G	.	.	LowGQX	.	GT	./.
chr1	230921787	.	G	.	.	LowGQX	END=230921795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230923259	.	G	.	.	LowGQX	END=230923358	GT	./.
chr1	230925857	.	C	.	.	LowGQX	END=230925939	GT	./.
chr1	230925940	.	G	.	.	LowGQX	END=230925956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230927593	.	T	.	.	LowGQX	END=230927692	GT	./.
chr1	230928157	.	A	.	.	LowGQX	END=230928256	GT	./.
chr1	230928586	.	C	.	.	LowGQX	END=230928685	GT	./.
chr1	230930907	.	A	.	.	LowGQX	END=230931027	GT	./.
chr1	230933888	.	T	.	.	LowGQX	END=230933987	GT	./.
chr1	230937280	.	G	.	.	LowGQX	END=230937379	GT	./.
chr1	230975526	.	C	.	.	LowGQX	END=230975676	GT	./.
chr1	230979097	.	C	.	.	LowGQX	END=230979526	GT	./.
chr1	230979527	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979528	.	A	.	.	LowGQX	.	GT	./.
chr1	230979529	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979530	.	T	.	.	LowGQX	.	GT	./.
chr1	230979531	.	T	.	.	LowGQX	END=230979548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979549	.	G	.	.	LowGQX	.	GT	./.
chr1	230979550	.	G	.	.	LowGQX	END=230979552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979553	.	A	.	.	LowGQX	.	GT	./.
chr1	230979554	.	G	.	.	LowGQX	END=230979556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979557	.	T	.	.	LowGQX	.	GT	./.
chr1	230979558	.	T	.	.	LowGQX	END=230979564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979565	.	T	.	.	LowGQX	.	GT	./.
chr1	230979566	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979567	.	G	.	.	LowGQX	.	GT	./.
chr1	230979568	.	T	.	.	LowGQX	END=230979569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979570	.	T	.	.	LowGQX	.	GT	./.
chr1	230979571	.	G	.	.	LowGQX	END=230979575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979576	.	C	.	.	LowGQX	.	GT	./.
chr1	230979577	.	G	.	.	LowGQX	END=230979587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979588	.	T	.	.	LowGQX	.	GT	./.
chr1	230979589	.	G	.	.	LowGQX	END=230979590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979591	.	C	.	.	LowGQX	END=230979592	GT	./.
chr1	230979593	.	T	.	.	LowGQX	END=230979596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979597	.	T	.	.	LowGQX	.	GT	./.
chr1	230979598	.	C	.	.	LowGQX	END=230979601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979602	.	T	.	.	LowGQX	.	GT	./.
chr1	230979603	.	C	.	.	LowGQX	END=230979604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979605	.	T	.	.	LowGQX	END=230979607	GT	./.
chr1	230979608	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979609	.	T	.	.	LowGQX	.	GT	./.
chr1	230979610	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979611	.	G	.	.	LowGQX	.	GT	./.
chr1	230979612	.	A	.	.	LowGQX	END=230979614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979615	.	G	.	.	LowGQX	.	GT	./.
chr1	230979616	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979617	.	G	.	.	LowGQX	.	GT	./.
chr1	230979618	.	C	.	.	LowGQX	END=230979620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979621	.	A	.	.	LowGQX	.	GT	./.
chr1	230979622	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979623	.	A	.	.	LowGQX	END=230979624	GT	./.
chr1	230979625	.	A	.	.	LowGQX	END=230979626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979627	.	T	.	.	LowGQX	END=230979628	GT	./.
chr1	230979629	.	A	.	.	LowGQX	END=230979636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979637	.	C	.	.	LowGQX	.	GT	./.
chr1	230979638	.	T	.	.	LowGQX	END=230979639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979640	.	A	.	.	LowGQX	.	GT	./.
chr1	230979641	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230979642	.	T	.	.	LowGQX	END=230979643	GT	./.
chr1	230979644	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230991390	.	A	.	.	LowGQX	END=230991407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230991408	.	A	.	.	LowGQX	.	GT	./.
chr1	230991409	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	230991410	.	T	.	.	LowGQX	END=230991489	GT	./.
chr1	231003915	.	C	.	.	LowGQX	END=231004260	GT	./.
chr1	231042649	.	A	.	.	LowGQX	END=231042767	GT	./.
chr1	231044054	.	C	.	.	LowGQX	END=231044213	GT	./.
chr1	231044448	.	A	.	.	LowGQX	END=231044453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231044454	.	T	.	.	LowGQX	END=231044482	GT	./.
chr1	231044483	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231044484	.	G	.	.	LowGQX	END=231044495	GT	./.
chr1	231044496	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231044497	.	G	.	.	LowGQX	END=231044501	GT	./.
chr1	231044502	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231044503	.	G	.	.	LowGQX	END=231044504	GT	./.
chr1	231044505	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231044506	.	C	.	.	LowGQX	END=231044510	GT	./.
chr1	231044511	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231044512	.	G	.	.	LowGQX	END=231044519	GT	./.
chr1	231044520	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231044521	.	G	.	.	LowGQX	END=231044528	GT	./.
chr1	231044529	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231044530	.	T	.	.	LowGQX	END=231044537	GT	./.
chr1	231044538	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231044539	.	T	.	.	LowGQX	END=231044541	GT	./.
chr1	231044542	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231044543	.	A	.	.	LowGQX	END=231044544	GT	./.
chr1	231044545	.	A	.	.	LowGQX	END=231044547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231044678	.	T	.	.	LowGQX	END=231044777	GT	./.
chr1	231047206	.	T	.	.	LowGQX	END=231047305	GT	./.
chr1	231048327	.	A	.	.	LowGQX	END=231048506	GT	./.
chr1	231051937	.	A	.	.	LowGQX	END=231052050	GT	./.
chr1	231056172	.	A	.	.	LowGQX	END=231056342	GT	./.
chr1	231057099	.	A	.	.	LowGQX	END=231057314	GT	./.
chr1	231059584	.	T	.	.	LowGQX	END=231059683	GT	./.
chr1	231060585	.	A	.	.	LowGQX	END=231060721	GT	./.
chr1	231061261	.	A	.	.	LowGQX	END=231061316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	231061317	.	A	.	.	LowGQX	END=231061395	GT	./.
chr1	231064681	.	A	.	.	LowGQX	END=231064841	GT	./.
chr1	231067042	.	A	.	.	LowGQX	END=231067194	GT	./.
chr1	231067195	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:42
chr1	231067196	.	T	.	.	LowGQX	END=231067197	GT	./.
chr1	231067198	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:42
chr1	231067199	.	G	.	.	LowGQX	.	GT	./.
chr1	231067200	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=42;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:42:3:1.000
chr1	231067201	.	C	.	.	LowGQX	END=231067206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:42
chr1	231067207	.	C	.	.	LowGQX	.	GT	./.
chr1	231067208	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:42
chr1	231067209	.	G	.	.	LowGQX	.	GT	./.
chr1	231067210	.	C	.	.	LowGQX	END=231067213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:42
chr1	231067214	.	C	.	.	LowGQX	END=231067216	GT	./.
chr1	231067217	.	C	.	.	LowGQX	END=231067219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:42
chr1	231067220	.	T	.	.	LowGQX	.	GT	./.
chr1	231067480	.	A	.	.	LowGQX	.	GT	./.
chr1	231067481	.	C	.	.	LowGQX	END=231067589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231067590	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	231067591	.	C	.	.	LowGQX	END=231067611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	231067612	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	231067613	.	T	.	.	LowGQX	END=231067625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	231069517	.	T	.	.	LowGQX	END=231069616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231071904	.	A	.	.	LowGQX	END=231072010	GT	./.
chr1	231075130	.	A	.	.	LowGQX	END=231075244	GT	./.
chr1	231076184	.	A	.	.	LowGQX	END=231076304	GT	./.
chr1	231079549	.	C	.	.	LowGQX	END=231079648	GT	./.
chr1	231081118	.	A	.	.	LowGQX	END=231081123	GT	./.
chr1	231081124	.	T	.	.	LowGQX	END=231081217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231090065	.	A	.	.	LowGQX	END=231090164	GT	./.
chr1	231092253	.	C	.	.	LowGQX	END=231092352	GT	./.
chr1	231093958	.	T	.	.	LowGQX	END=231094057	GT	./.
chr1	231096953	.	A	.	.	LowGQX	END=231096957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231096958	.	A	.	.	LowGQX	.	GT	./.
chr1	231096959	.	A	.	.	LowGQX	END=231096978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231096979	.	A	.	.	LowGQX	.	GT	./.
chr1	231096980	.	A	.	.	LowGQX	END=231096985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231096986	.	G	.	.	LowGQX	.	GT	./.
chr1	231096987	.	A	.	.	LowGQX	END=231096989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231096990	.	C	.	.	LowGQX	END=231097052	GT	./.
chr1	231114293	.	G	.	.	LowGQX	END=231114582	GT	./.
chr1	231114850	.	A	.	.	LowGQX	END=231114943	GT	./.
chr1	231114944	.	G	.	.	LowGQX	END=231114957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231114958	.	A	.	.	LowGQX	.	GT	./.
chr1	231114959	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231114960	.	T	.	.	LowGQX	.	GT	./.
chr1	231114961	.	G	.	.	LowGQX	END=231114962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231114963	.	A	.	.	LowGQX	.	GT	./.
chr1	231114964	.	A	.	.	LowGQX	END=231114969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231114970	.	A	.	.	LowGQX	.	GT	./.
chr1	231114971	.	G	.	.	LowGQX	END=231114980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231114981	.	T	.	.	LowGQX	END=231114983	GT	./.
chr1	231114984	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231114985	.	A	.	.	LowGQX	.	GT	./.
chr1	231114986	.	C	.	.	LowGQX	END=231114988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231114989	.	A	.	.	LowGQX	.	GT	./.
chr1	231114990	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231114991	.	A	.	.	LowGQX	.	GT	./.
chr1	231114992	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231114993	.	T	.	.	LowGQX	END=231114994	GT	./.
chr1	231114995	.	T	.	.	LowGQX	END=231114996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231114997	.	A	.	.	LowGQX	.	GT	./.
chr1	231114998	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231114999	.	C	.	.	LowGQX	.	GT	./.
chr1	231115000	.	A	.	.	LowGQX	END=231115006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231115007	.	G	.	.	LowGQX	END=231115008	GT	./.
chr1	231115009	.	T	.	.	LowGQX	END=231115013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231115014	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	231115015	.	T	.	.	LowGQX	END=231115016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	231115017	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	231115018	.	C	.	.	LowGQX	END=231115038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	231115039	.	T	.	.	LowGQX	.	GT	./.
chr1	231115040	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	231115041	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	231115042	.	G	.	.	LowGQX	END=231115049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	231124014	.	A	.	.	LowGQX	END=231124187	GT	./.
chr1	231125854	.	A	.	.	LowGQX	END=231126008	GT	./.
chr1	231126009	.	G	.	.	LowGQX	END=231126034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231126035	.	C	.	.	LowGQX	.	GT	./.
chr1	231126036	.	T	.	.	LowGQX	END=231126043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231126285	.	A	.	.	LowGQX	END=231126345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231126346	.	G	.	2.30	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:2:0:60:0
chr1	231126347	.	C	.	.	LowGQX	END=231126445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231131504	.	A	.	.	LowGQX	END=231131732	GT	./.
chr1	231132865	.	A	.	.	LowGQX	END=231133011	GT	./.
chr1	231155574	.	G	.	.	LowGQX	END=231155759	GT	./.
chr1	231155760	.	T	.	.	LowGQX	END=231155765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231155766	.	C	.	.	LowGQX	.	GT	./.
chr1	231155767	.	A	.	.	LowGQX	END=231155855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231155856	.	A	.	.	LowGQX	.	GT	./.
chr1	231155857	.	G	.	.	LowGQX	END=231155874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	231175665	.	A	.	.	LowGQX	END=231175959	GT	./.
chr1	231298704	.	G	.	.	LowGQX	END=231298706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231298707	.	G	.	.	LowGQX	END=231298768	GT	./.
chr1	231298769	.	C	.	.	LowGQX	END=231298775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231298776	.	C	.	.	LowGQX	.	GT	./.
chr1	231298777	.	C	.	.	LowGQX	END=231298780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231298781	.	T	.	.	LowGQX	END=231298782	GT	./.
chr1	231298783	.	C	.	.	LowGQX	END=231298789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231298790	.	T	.	.	LowGQX	END=231298791	GT	./.
chr1	231298792	.	T	.	.	LowGQX	END=231298796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231298797	.	C	.	.	LowGQX	END=231298798	GT	./.
chr1	231298799	.	G	.	.	LowGQX	END=231298812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231298813	.	C	.	.	LowGQX	.	GT	./.
chr1	231298814	.	C	.	.	LowGQX	END=231298821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231298822	.	T	.	.	LowGQX	.	GT	./.
chr1	231298823	.	G	.	.	LowGQX	END=231298837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231298838	.	T	.	.	LowGQX	.	GT	./.
chr1	231298839	.	G	.	.	LowGQX	END=231298848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231298849	.	T	.	.	LowGQX	.	GT	./.
chr1	231298850	.	G	.	.	LowGQX	END=231298868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231298869	.	T	.	.	LowGQX	.	GT	./.
chr1	231298870	.	C	.	.	LowGQX	END=231298876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231298877	.	A	.	.	LowGQX	END=231298878	GT	./.
chr1	231298879	.	C	.	.	LowGQX	END=231298895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231298896	.	G	.	.	LowGQX	.	GT	./.
chr1	231298897	.	C	.	.	LowGQX	END=231298917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231298918	.	A	.	.	LowGQX	.	GT	./.
chr1	231298919	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231298920	.	C	.	.	LowGQX	END=231299759	GT	./.
chr1	231320759	.	G	.	.	LowGQX	END=231320982	GT	./.
chr1	231321821	.	C	.	.	LowGQX	END=231321878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231321879	.	T	.	.	LowGQX	.	GT	./.
chr1	231321880	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231321881	.	A	.	.	LowGQX	END=231321920	GT	./.
chr1	231323238	.	A	.	.	LowGQX	END=231323337	GT	./.
chr1	231333115	.	A	.	.	LowGQX	END=231333214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231334792	.	G	.	.	LowGQX	END=231334795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231334796	.	A	.	.	LowGQX	END=231334797	GT	./.
chr1	231334798	.	C	.	.	LowGQX	END=231334808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231334809	.	A	.	.	LowGQX	END=231334810	GT	./.
chr1	231334811	.	G	.	.	LowGQX	END=231334814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231334815	.	C	.	.	LowGQX	.	GT	./.
chr1	231334816	.	C	.	.	LowGQX	END=231334834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231334835	.	G	.	.	LowGQX	.	GT	./.
chr1	231334836	.	A	.	.	LowGQX	END=231334839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231334840	.	C	.	.	LowGQX	.	GT	./.
chr1	231334841	.	C	.	.	LowGQX	END=231334846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231334847	.	G	.	.	LowGQX	END=231334848	GT	./.
chr1	231334849	.	T	.	.	LowGQX	END=231334851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231334852	.	T	.	.	LowGQX	.	GT	./.
chr1	231334853	.	T	.	.	LowGQX	END=231334858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231334859	.	C	.	.	LowGQX	END=231334860	GT	./.
chr1	231334861	.	T	.	.	LowGQX	END=231334867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231334868	.	G	.	.	LowGQX	.	GT	./.
chr1	231334869	.	C	.	.	LowGQX	END=231334874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231334875	.	T	.	.	LowGQX	END=231334876	GT	./.
chr1	231334877	.	C	.	.	LowGQX	END=231334882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231334883	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	231334884	.	A	.	.	LowGQX	END=231334915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	231335893	.	G	.	.	LowGQX	END=231336004	GT	./.
chr1	231337103	.	G	.	.	LowGQX	END=231337263	GT	./.
chr1	231339612	.	G	.	.	LowGQX	END=231339627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231339628	.	T	.	.	LowGQX	.	GT	./.
chr1	231339629	.	A	.	.	LowGQX	END=231339630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231339631	.	T	.	.	LowGQX	END=231339758	GT	./.
chr1	231342397	.	G	.	.	LowGQX	END=231342536	GT	./.
chr1	231344692	.	G	.	.	LowGQX	END=231344720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	231344721	.	T	.	.	LowGQX	END=231344996	GT	./.
chr1	231349560	.	G	.	.	LowGQX	END=231349723	GT	./.
chr1	231351104	.	C	.	.	LowGQX	END=231351203	GT	./.
chr1	231353543	.	C	.	.	LowGQX	END=231353642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231355634	.	C	.	.	LowGQX	END=231355725	GT	./.
chr1	231355726	.	G	.	.	LowGQX	END=231355733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231360023	.	C	.	.	LowGQX	END=231360162	GT	./.
chr1	231361192	.	C	.	.	LowGQX	END=231361291	GT	./.
chr1	231362452	.	C	.	.	LowGQX	END=231362573	GT	./.
chr1	231362717	.	A	.	.	LowGQX	END=231362816	GT	./.
chr1	231364824	.	A	.	.	LowGQX	END=231364975	GT	./.
chr1	231374552	.	C	.	.	LowGQX	END=231374936	GT	./.
chr1	231376718	.	C	.	.	LowGQX	END=231376795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231376796	.	G	.	.	LowGQX	END=231376833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	231376834	.	C	.	.	LowGQX	END=231376855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	231376856	.	A	.	.	LowGQX	END=231376864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	231376865	.	T	.	.	LowGQX	END=231376871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	231376872	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	231376873	.	G	.	.	LowGQX	END=231376874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	231376875	.	A	.	.	LowGQX	END=231376877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr1	231376878	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	231376879	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	231376880	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:3:60
chr1	231376881	.	C	.	.	LowGQX	END=231376888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	231376889	.	C	.	4.58	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.01:60:0
chr1	231377074	.	A	.	.	PASS	END=231377182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	231377183	.	C	.	.	PASS	END=231377193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:60
chr1	231377194	.	C	.	.	PASS	END=231377203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	231377204	.	T	.	.	PASS	END=231377210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	231377211	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:47:60
chr1	231377212	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:33:60
chr1	231377213	.	A	.	.	PASS	END=231377249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	231377250	.	T	.	.	PASS	END=231377253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	231386656	.	T	.	.	PASS	END=231386672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	231386673	.	G	.	.	PASS	END=231386720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	231386721	.	G	.	.	PASS	END=231386795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	231386796	.	A	.	.	PASS	END=231386813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	231386814	.	A	.	.	PASS	END=231386831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	231386832	.	A	.	.	PASS	END=231386855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	231386856	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:42:60
chr1	231386857	.	A	.	.	PASS	END=231386861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	231386862	.	T	.	.	PASS	END=231386878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	231386879	.	T	.	.	PASS	END=231386897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	231386898	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr1	231386899	.	T	.	.	PASS	END=231386913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	231386914	.	G	.	.	PASS	END=231386940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	231396202	.	C	.	.	PASS	END=231396367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	231396368	.	T	.	.	PASS	END=231396480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	231398418	.	T	.	.	PASS	END=231398455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	231398456	.	A	.	.	PASS	END=231398480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	231398481	.	A	.	.	PASS	END=231398512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	231398513	.	T	.	.	PASS	END=231398588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:85:60
chr1	231398589	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:64:54:60
chr1	231398590	.	C	.	.	PASS	END=231398644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	231398645	.	C	.	.	PASS	END=231398649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	231400988	.	T	.	.	PASS	END=231401005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	231401006	.	A	.	.	PASS	END=231401104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	231401105	.	C	.	.	PASS	END=231401193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	231401194	.	T	.	.	PASS	END=231401217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	231401407	.	A	.	.	PASS	END=231401498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	231401499	.	A	.	.	PASS	END=231401522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	231401523	.	T	.	.	PASS	END=231401584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	231401709	.	T	.	.	PASS	END=231401727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	231401728	.	G	.	.	PASS	END=231401761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	231401762	.	C	.	.	PASS	END=231401878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	231401879	.	C	.	.	PASS	END=231401917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	231401918	.	G	.	.	PASS	END=231401962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	231401972	.	T	.	.	PASS	END=231402017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	231402018	.	A	.	.	PASS	END=231402079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	231402080	.	T	.	.	PASS	END=231402119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	231402120	.	G	.	.	PASS	END=231402149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	231402150	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:55:60
chr1	231402151	.	A	.	.	PASS	END=231402154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	231402155	.	T	.	.	PASS	END=231402161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	231402162	.	T	.	.	PASS	END=231402170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	231402171	.	A	.	.	PASS	END=231402177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	231402178	.	T	.	.	PASS	END=231402183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	231402184	.	A	.	.	PASS	END=231402189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	231402190	.	G	.	.	PASS	END=231402204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	231403375	.	T	.	.	PASS	END=231403399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	231403400	.	T	.	.	PASS	END=231403414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	231403415	.	C	.	.	PASS	END=231403443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	231403444	.	G	.	.	PASS	END=231403507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	231403508	.	A	.	.	PASS	END=231403573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	231403574	.	T	.	.	PASS	END=231403596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	231403597	.	T	.	.	PASS	END=231403632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	231403633	.	G	.	.	PASS	END=231403659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	231403660	.	A	.	.	PASS	END=231403669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr1	231403670	.	T	.	.	PASS	END=231403671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr1	231403672	.	T	.	.	PASS	END=231403677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	231403678	.	A	.	.	PASS	END=231403699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr1	231403700	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:51:60
chr1	231406453	.	A	.	.	PASS	END=231406459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	231406460	.	C	.	.	PASS	END=231406489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	231406490	.	G	.	.	PASS	END=231406504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	231406505	.	T	.	.	PASS	END=231406539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	231406540	.	T	.	.	PASS	END=231406569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	231406570	.	T	.	.	PASS	END=231406665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	231406666	.	A	.	.	PASS	END=231406719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	231406720	.	T	.	.	PASS	END=231406781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	231406782	.	A	.	.	PASS	END=231406796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	231406797	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:99:60
chr1	231408007	.	T	.	.	PASS	END=231408044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	231408045	.	C	.	.	PASS	END=231408066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:82:60
chr1	231408067	.	A	.	.	PASS	END=231408174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	231408175	.	T	.	.	PASS	END=231408188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	231409617	.	C	.	.	PASS	END=231409658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	231409659	.	C	.	.	PASS	END=231409755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	231409756	.	C	.	.	PASS	END=231409778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	231409779	.	C	.	.	PASS	END=231409812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	231409813	.	G	.	.	PASS	END=231409827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	231409828	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:75:60
chr1	231409829	.	C	.	.	PASS	END=231409859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	231410916	.	T	.	.	PASS	END=231411070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	231411071	.	G	.	.	PASS	END=231411112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	231411113	.	A	.	.	PASS	END=231411221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	231411222	.	G	.	.	PASS	END=231411260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	231411261	.	A	.	.	PASS	END=231411273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	231411274	.	T	.	.	PASS	END=231411295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	231411830	.	T	.	.	PASS	END=231411870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:78:60
chr1	231411871	.	T	.	.	PASS	END=231411904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	231411905	.	G	.	.	PASS	END=231411955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	231411956	.	A	.	.	PASS	END=231411993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	231413187	.	T	.	.	PASS	END=231413243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	231413244	.	G	.	.	PASS	END=231413329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	231413330	.	T	.	.	PASS	END=231413339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr1	231471312	.	C	.	.	LowGQX	END=231472864	GT	./.
chr1	231472865	.	G	.	.	LowGQX	END=231472877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231472878	.	C	.	.	LowGQX	.	GT	./.
chr1	231472879	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231472880	.	G	.	.	LowGQX	.	GT	./.
chr1	231472881	.	T	.	.	LowGQX	END=231472889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231472890	.	T	.	.	LowGQX	.	GT	./.
chr1	231472891	.	G	.	.	LowGQX	END=231472919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231472920	.	T	.	.	LowGQX	END=231472921	GT	./.
chr1	231472922	.	C	.	.	LowGQX	END=231472926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231472927	.	G	.	.	LowGQX	.	GT	./.
chr1	231472928	.	G	.	.	LowGQX	END=231472935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231472936	.	T	.	.	LowGQX	.	GT	./.
chr1	231472937	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231472938	.	T	.	.	LowGQX	.	GT	./.
chr1	231472939	.	A	.	.	LowGQX	END=231472949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231472950	.	T	.	.	LowGQX	.	GT	./.
chr1	231472951	.	G	.	.	LowGQX	END=231472953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231472954	.	C	.	.	LowGQX	.	GT	./.
chr1	231472955	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231472956	.	G	.	.	LowGQX	.	GT	./.
chr1	231472957	.	G	.	.	LowGQX	END=231472962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231472963	.	C	.	.	LowGQX	.	GT	./.
chr1	231472964	.	C	.	.	LowGQX	END=231472965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231472966	.	G	.	.	LowGQX	.	GT	./.
chr1	231472967	.	C	.	.	LowGQX	END=231472969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231472970	.	A	.	.	LowGQX	END=231472971	GT	./.
chr1	231472972	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231472973	.	C	.	.	LowGQX	.	GT	./.
chr1	231472974	.	C	.	.	LowGQX	END=231472980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231472981	.	C	.	.	LowGQX	.	GT	./.
chr1	231472982	.	T	.	.	LowGQX	END=231472984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231472985	.	C	.	.	LowGQX	END=231472986	GT	./.
chr1	231472987	.	C	.	.	LowGQX	END=231472996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231472997	.	C	.	.	LowGQX	.	GT	./.
chr1	231472998	.	A	.	.	LowGQX	END=231473001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473002	.	T	.	.	LowGQX	END=231473003	GT	./.
chr1	231473004	.	G	.	.	LowGQX	END=231473009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473010	.	G	.	.	LowGQX	.	GT	./.
chr1	231473011	.	T	.	.	LowGQX	END=231473014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473015	.	C	.	.	LowGQX	END=231473145	GT	./.
chr1	231473146	.	C	.	.	LowGQX	END=231473150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473151	.	G	.	.	LowGQX	.	GT	./.
chr1	231473152	.	C	.	.	LowGQX	END=231473164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473165	.	A	.	.	LowGQX	.	GT	./.
chr1	231473166	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473167	.	C	.	.	LowGQX	END=231473168	GT	./.
chr1	231473169	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473170	.	C	.	.	LowGQX	.	GT	./.
chr1	231473171	.	A	.	.	LowGQX	END=231473172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473173	.	G	.	.	LowGQX	.	GT	./.
chr1	231473174	.	C	.	.	LowGQX	END=231473181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473182	.	T	.	.	LowGQX	END=231473184	GT	./.
chr1	231473185	.	G	.	.	LowGQX	END=231473193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473194	.	T	.	.	LowGQX	.	GT	./.
chr1	231473195	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473196	.	T	.	.	LowGQX	END=231473197	GT	./.
chr1	231473198	.	C	.	.	LowGQX	END=231473199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473200	.	G	.	.	LowGQX	END=231473201	GT	./.
chr1	231473202	.	C	.	.	LowGQX	END=231473205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473206	.	T	.	.	LowGQX	.	GT	./.
chr1	231473207	.	T	.	.	LowGQX	END=231473208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473209	.	T	.	.	LowGQX	.	GT	./.
chr1	231473210	.	C	.	.	LowGQX	END=231473212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473213	.	C	.	.	LowGQX	.	GT	./.
chr1	231473214	.	T	.	.	LowGQX	END=231473216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473217	.	G	.	.	LowGQX	.	GT	./.
chr1	231473218	.	T	.	.	LowGQX	END=231473221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473222	.	C	.	.	LowGQX	.	GT	./.
chr1	231473223	.	A	.	.	LowGQX	END=231473228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473229	.	C	.	.	LowGQX	.	GT	./.
chr1	231473230	.	T	.	.	LowGQX	END=231473234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473235	.	T	.	.	LowGQX	.	GT	./.
chr1	231473236	.	G	.	.	LowGQX	END=231473237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473238	.	T	.	.	LowGQX	.	GT	./.
chr1	231473239	.	A	.	.	LowGQX	END=231473240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473241	.	A	.	.	LowGQX	END=231473242	GT	./.
chr1	231473243	.	C	.	.	LowGQX	END=231473245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473246	.	G	.	.	LowGQX	.	GT	./.
chr1	231473247	.	C	.	.	LowGQX	END=231473255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473256	.	T	.	.	LowGQX	.	GT	./.
chr1	231473257	.	A	.	.	LowGQX	END=231473260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473261	.	G	.	.	LowGQX	END=231473262	GT	./.
chr1	231473263	.	T	.	.	LowGQX	END=231473276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473277	.	T	.	.	LowGQX	.	GT	./.
chr1	231473278	.	C	.	.	LowGQX	END=231473283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473284	.	A	.	.	LowGQX	.	GT	./.
chr1	231473285	.	C	.	.	LowGQX	END=231473286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473287	.	G	.	.	LowGQX	END=231473288	GT	./.
chr1	231473289	.	C	.	.	LowGQX	END=231473295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231473296	.	T	.	.	LowGQX	END=231473493	GT	./.
chr1	231474128	.	C	.	.	LowGQX	END=231474352	GT	./.
chr1	231475513	.	A	.	.	LowGQX	.	GT	./.
chr1	231475514	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231475515	.	G	.	.	LowGQX	END=231475518	GT	./.
chr1	231475519	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231475520	.	C	.	.	LowGQX	END=231475521	GT	./.
chr1	231475522	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231475523	.	G	.	.	LowGQX	END=231475526	GT	./.
chr1	231475527	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231475528	.	T	.	.	LowGQX	END=231475550	GT	./.
chr1	231475551	.	A	.	.	LowGQX	END=231475552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231475553	.	T	.	.	LowGQX	END=231475558	GT	./.
chr1	231475559	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231475560	.	C	.	.	LowGQX	END=231475569	GT	./.
chr1	231475570	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231475571	.	G	.	.	LowGQX	END=231475616	GT	./.
chr1	231480407	.	A	.	.	LowGQX	END=231480506	GT	./.
chr1	231483541	.	A	.	.	LowGQX	END=231483673	GT	./.
chr1	231487048	.	A	.	.	LowGQX	END=231487354	GT	./.
chr1	231488354	.	A	.	.	LowGQX	.	GT	./.
chr1	231488355	.	G	.	.	LowGQX	END=231488374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231488375	.	G	.	.	LowGQX	.	GT	./.
chr1	231488376	.	G	.	.	LowGQX	END=231488377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231488378	.	C	.	.	LowGQX	.	GT	./.
chr1	231488379	.	C	.	.	LowGQX	END=231488381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231488382	.	C	.	.	LowGQX	END=231488453	GT	./.
chr1	231488454	.	A	.	.	LowGQX	END=231488458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231488459	.	T	.	.	LowGQX	.	GT	./.
chr1	231488460	.	T	.	.	LowGQX	END=231488523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231488524	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	231488525	.	T	.	.	LowGQX	END=231488560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231488561	.	T	.	.	LowGQX	.	GT	./.
chr1	231488562	.	T	.	.	LowGQX	END=231488603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231488604	.	A	.	.	LowGQX	END=231489109	GT	./.
chr1	231502106	.	A	.	.	PASS	END=231502119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	231502120	.	A	.	.	PASS	END=231502195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	231502196	.	G	.	.	PASS	END=231502244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	231502245	.	T	A	2433.72	PASS	BaseQRankSum=1.119;DP=128;Dels=0.27;FS=8.644;HRun=14;HaplotypeScore=66.5554;MQ=60;MQ0=0;MQRankSum=-1.893;QD=19.01;ReadPosRankSum=1.205;SB=-987.86	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:3,91:94:99:2467,125,0:60:99:0.968
chr1	231502246	.	T	.	.	PASS	END=231502270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	231502271	.	G	.	.	PASS	END=231502272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	231503264	.	G	.	.	PASS	END=231503286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:98:60
chr1	231503287	.	A	.	.	PASS	END=231503371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	231503372	.	T	.	.	PASS	END=231503411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	231503412	.	T	.	.	PASS	END=231503433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	231506257	.	C	.	.	PASS	END=231506260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	231506261	.	C	.	.	PASS	END=231506262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	231506263	.	G	.	.	PASS	END=231506273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	231506274	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:24:60
chr1	231506275	.	T	.	.	PASS	END=231506301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	231506302	.	T	.	.	PASS	END=231506308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	231506309	.	T	.	.	PASS	END=231506324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	231506325	.	T	.	.	PASS	END=231506357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:87:60
chr1	231506358	.	G	.	.	PASS	END=231506440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:93:60
chr1	231506441	.	T	.	.	PASS	END=231506468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	231506469	.	G	.	.	PASS	END=231506479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	231506480	.	C	.	.	PASS	END=231506490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	231506491	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:30:60
chr1	231506492	.	A	.	.	PASS	END=231506495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	231509675	.	G	.	.	PASS	END=231509686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	231509687	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:76:60
chr1	231509688	.	C	.	.	PASS	END=231509724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	231509725	.	C	.	.	PASS	END=231509754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	231509755	.	A	.	.	PASS	END=231509825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	231509826	.	G	.	.	PASS	END=231509896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	231556693	.	G	.	.	PASS	END=231556713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	231556714	.	G	.	.	PASS	END=231556743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	231556744	.	T	.	.	PASS	END=231556800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	231556801	.	G	.	.	PASS	END=231556812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	231556813	.	G	.	.	PASS	END=231556885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr1	231556886	.	T	.	.	PASS	END=231556963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr1	231556964	.	T	.	.	PASS	END=231557035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	231557036	.	G	.	.	PASS	END=231557050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	231557051	.	A	.	.	PASS	END=231557090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	231557091	.	T	.	123.28	PASS	DP=98;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:75:98:93.28:60:93
chr1	231557092	.	G	.	.	PASS	END=231557126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	231557127	.	C	.	.	PASS	END=231557152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	231557153	.	T	.	.	PASS	END=231557167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	231557168	.	A	.	.	PASS	END=231557170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	231557171	.	A	.	.	PASS	END=231557175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	231557176	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:42:60
chr1	231557177	.	G	.	.	PASS	END=231557184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	231557185	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:30:60
chr1	231557186	.	G	.	.	PASS	END=231557191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	231557192	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:42:60
chr1	231557193	.	C	.	.	PASS	END=231557199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	231557200	.	G	.	.	PASS	END=231557203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	231557204	.	G	.	.	PASS	END=231557211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	231557212	.	T	.	.	LowGQX	END=231557213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	231557214	.	C	.	.	PASS	END=231557219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	231557220	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	231557221	.	C	.	.	LowGQX	END=231557223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	231557224	.	C	.	.	PASS	END=231557225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	231557226	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	231557227	.	C	.	.	PASS	END=231557228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	231557229	.	A	.	.	LowGQX	END=231557233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	231557234	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	231557235	.	G	.	.	LowGQX	END=231557240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	231557241	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	231557242	.	G	.	.	LowGQX	END=231557251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	231557252	.	C	.	.	LowGQX	END=231557259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	231557260	.	C	.	.	LowGQX	END=231557262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	231557263	.	C	.	.	LowGQX	END=231557270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	231557271	.	C	.	.	LowGQX	END=231557274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	231557275	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	231557276	.	G	.	.	LowGQX	END=231557278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	231557279	.	T	.	42.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.03:60:12
chr1	231557280	.	C	.	.	LowGQX	END=231557318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	231557319	.	C	.	.	LowGQX	END=231557331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	231557332	.	G	.	.	LowGQX	END=231557350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	231557351	.	T	.	.	LowGQX	END=231557366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	231557367	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	231557368	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	231557369	.	C	.	.	PASS	END=231557379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	231557380	.	C	.	.	PASS	END=231557386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	231557387	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:30:60
chr1	231557388	.	C	.	.	PASS	END=231557413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	231557414	.	T	.	.	PASS	END=231557423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	231557424	.	G	.	.	PASS	END=231557438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr1	231557439	.	C	.	.	PASS	END=231557445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	231557446	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:63:60
chr1	231557447	.	C	.	.	PASS	END=231557462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	231557463	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr1	231557464	.	C	.	.	PASS	END=231557499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr1	231557500	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:74:60
chr1	231557501	.	T	.	.	PASS	END=231557523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	231557524	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:66:60
chr1	231557525	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:51:21:60
chr1	231557526	.	G	.	.	PASS	END=231557548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	231557549	.	T	.	.	PASS	END=231557550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:69:60
chr1	231557551	.	C	.	.	PASS	END=231557584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	231557585	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:75:60
chr1	231557586	.	C	.	.	PASS	END=231557600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	231557601	.	T	.	.	PASS	END=231557602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:75:60
chr1	231557603	.	G	.	.	PASS	END=231557610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	231557611	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:57:60
chr1	231557612	.	G	.	.	PASS	END=231557623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	231557624	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:60
chr1	231557625	.	C	.	.	PASS	END=231557633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	231557634	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:54:60
chr1	231557635	.	G	.	.	PASS	END=231557653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	231557654	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:54:60
chr1	231557655	.	C	.	.	PASS	END=231557659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	231557660	.	A	.	.	PASS	END=231557674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	231557675	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:24:60
chr1	231557676	.	A	.	.	PASS	END=231557677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	231557678	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:72:60
chr1	231557679	.	A	.	.	PASS	END=231557681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	231557682	.	G	.	.	PASS	END=231557685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	231664515	.	G	.	.	LowGQX	END=231664614	GT	./.
chr1	231664999	.	A	.	.	LowGQX	END=231665107	GT	./.
chr1	231672957	.	A	.	.	LowGQX	END=231673075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	231678206	.	T	.	.	LowGQX	END=231678359	GT	./.
chr1	231696822	.	T	.	.	LowGQX	END=231697003	GT	./.
chr1	231700272	.	A	.	.	LowGQX	END=231700653	GT	./.
chr1	231752586	.	C	.	.	LowGQX	END=231752685	GT	./.
chr1	231762503	.	G	.	.	PASS	END=231762508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	231762509	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	231762510	.	C	.	.	PASS	END=231762513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	231762514	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	231762515	.	C	.	.	PASS	END=231762521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	231762522	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	231762523	.	C	.	.	PASS	END=231762524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	231762525	.	A	.	.	PASS	END=231762526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	231762527	.	C	.	.	PASS	END=231762535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	231762536	.	C	.	.	PASS	END=231762537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	231762538	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:30:60
chr1	231762539	.	T	.	.	PASS	END=231762545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	231762546	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr1	231762547	.	G	.	.	PASS	END=231762558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	231762559	.	G	.	.	PASS	END=231762565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	231762566	.	G	.	.	PASS	END=231762567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	231762568	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:30:60
chr1	231762569	.	C	.	.	PASS	END=231762580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	231762581	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:46:60
chr1	231762582	.	A	.	.	PASS	END=231762598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	231762599	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:52:60
chr1	231762600	.	T	.	.	PASS	END=231762612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr1	231762613	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:61:60
chr1	231762614	.	A	.	.	PASS	END=231762671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:77:60
chr1	231762672	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:34:60
chr1	231762673	.	C	.	.	PASS	END=231762687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	231762688	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:72:60
chr1	231762689	.	G	.	.	PASS	END=231762708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:86:60
chr1	231762709	.	C	.	.	PASS	END=231762719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	231762720	.	G	.	.	PASS	END=231762728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	231762729	.	A	.	.	PASS	END=231762731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	231829521	.	G	.	.	PASS	END=231829551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	231829552	.	G	.	.	PASS	END=231829601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	231829602	.	G	.	.	PASS	END=231829656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	231829657	.	G	.	.	PASS	END=231829674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	231829675	.	T	.	.	PASS	END=231829682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	231829683	.	C	.	.	PASS	END=231829703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	231829704	.	T	.	.	PASS	END=231829735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	231829736	.	C	.	.	PASS	END=231829750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	231829751	.	G	.	.	PASS	END=231829763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:277:99:60
chr1	231829764	.	G	.	.	PASS	END=231829811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:361:99:60
chr1	231829812	.	C	.	.	PASS	END=231829973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:439:99:60
chr1	231829974	.	A	.	.	PASS	END=231830160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:347:99:60
chr1	231830161	.	T	.	.	PASS	END=231830205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:282:99:60
chr1	231830206	.	G	.	.	PASS	END=231830275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	231830276	.	G	.	.	PASS	END=231830318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	231830319	.	G	.	.	PASS	END=231830415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	231830416	.	T	.	.	PASS	END=231830463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	231830464	.	A	.	.	PASS	END=231830485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	231830486	.	A	.	.	PASS	END=231830508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr1	231830509	.	A	.	.	PASS	END=231830513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	231830514	.	T	.	.	PASS	END=231830525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	231830526	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:69:60
chr1	231830527	.	G	.	.	PASS	END=231830534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	231830535	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:51:60
chr1	231830536	.	C	.	.	PASS	END=231830546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	231830547	.	T	.	.	PASS	END=231830548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	231830549	.	G	.	.	PASS	END=231830550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	231830551	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:36:60
chr1	231830552	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:75:60
chr1	231830553	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:45:60
chr1	231830554	.	C	.	.	PASS	END=231830556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	231830557	.	T	.	.	PASS	END=231830558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr1	231830559	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:33:60
chr1	231830560	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:75:60
chr1	231830561	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:48:60
chr1	231830562	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:75:60
chr1	231830563	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:57:60
chr1	231830564	.	T	.	.	PASS	END=231830573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	231830574	.	T	.	.	PASS	END=231830586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	231830587	.	T	.	.	PASS	END=231830588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	231830589	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:27:60
chr1	231830590	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:45:60
chr1	231830591	.	G	.	.	PASS	END=231830594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	231830595	.	T	.	.	PASS	END=231830602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	231837650	.	T	.	.	PASS	END=231837684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	231837685	.	C	.	.	PASS	END=231837694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:86:60
chr1	231837695	.	A	.	.	PASS	END=231837722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	231837723	.	T	.	.	PASS	END=231837775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	231837776	.	T	.	.	PASS	END=231837828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	231856587	.	T	.	.	PASS	END=231856680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	231856681	.	T	.	.	PASS	END=231856686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	231856692	.	G	.	.	PASS	END=231856818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	231858234	.	A	.	.	PASS	END=231858247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	231858248	.	C	.	.	PASS	END=231858254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	231858255	.	A	.	.	PASS	END=231858316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	231858317	.	G	.	.	PASS	END=231858393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	231858394	.	C	.	.	PASS	END=231858398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	231881118	.	C	.	.	LowGQX	END=231881120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	231881121	.	C	.	.	LowGQX	END=231881147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	231881148	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	231881149	.	G	.	.	PASS	END=231881150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	231881151	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	231881152	.	G	.	.	PASS	END=231881155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	231881156	.	C	.	.	PASS	END=231881163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	231881164	.	C	.	.	PASS	END=231881192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	231881193	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:21:60
chr1	231881194	.	C	.	.	PASS	END=231881222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	231881223	.	C	.	.	PASS	END=231881276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	231885621	.	T	.	.	PASS	END=231885665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	231885666	.	T	.	.	PASS	END=231885759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	231885760	.	C	.	.	PASS	END=231885799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	231885800	.	T	.	.	PASS	END=231885813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	231885814	.	C	.	.	PASS	END=231885826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	231902835	.	G	.	.	PASS	END=231902848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	231902849	.	C	.	.	PASS	END=231902866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	231902867	.	A	.	.	PASS	END=231902902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	231902903	.	C	.	.	PASS	END=231902946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	231902947	.	G	.	.	PASS	END=231903061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	231903062	.	T	.	.	PASS	END=231903066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	231906530	.	T	.	.	PASS	END=231906541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr1	231906542	.	G	.	.	PASS	END=231906572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	231906573	.	C	.	.	PASS	END=231906608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	231906609	.	T	.	.	PASS	END=231906667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	231906668	.	C	.	.	PASS	END=231906720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	231906721	.	G	.	.	PASS	END=231906757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	231906758	.	A	.	.	PASS	END=231906771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:96:60
chr1	231906772	.	C	.	.	PASS	END=231906794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	231906795	.	A	.	.	PASS	END=231906815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	231906816	.	G	.	.	PASS	END=231906826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	231910384	.	G	.	.	LowGQX	END=231910563	GT	./.
chr1	231930935	.	G	.	.	PASS	END=231931043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	231931044	.	T	.	.	PASS	END=231931047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	231931048	.	T	C	725.44	PASS	BaseQRankSum=-0.788;DP=61;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7868;MQ=60;MQ0=0;MQRankSum=0.684;QD=11.89;ReadPosRankSum=-0.045;SB=-417.26	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:27,33:61:99:755,0,681:60:99:0.550
chr1	231931049	.	A	.	.	PASS	END=231931059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:60
chr1	231931060	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:66:60
chr1	231931061	.	C	.	.	PASS	END=231931067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	231931068	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:63:60
chr1	231931069	.	C	.	.	PASS	END=231931089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	231931090	.	C	.	.	PASS	END=231931093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	231935803	.	C	.	.	PASS	END=231935815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	231935816	.	G	.	.	PASS	END=231935845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	231935846	.	C	.	.	PASS	END=231935851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	231935852	.	A	.	.	PASS	END=231935868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	231935869	.	A	.	.	PASS	END=231935998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	231935999	.	T	.	.	PASS	END=231936007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	231954024	.	T	.	.	PASS	END=231954032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr1	231954033	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:71:60
chr1	231954034	.	A	.	.	PASS	END=231954057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr1	231954058	.	C	.	.	PASS	END=231954073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	231954074	.	G	.	.	PASS	END=231954091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	231954092	.	G	.	.	PASS	END=231954114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	231954115	.	T	.	.	PASS	END=231954153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	231954154	.	C	.	.	PASS	END=231954232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	231954233	.	A	.	.	PASS	END=231954255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	231954256	.	T	.	.	PASS	END=231954269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	231954270	.	A	.	.	PASS	END=231954271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	231990473	.	T	.	.	PASS	END=231990481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	231990482	.	G	.	.	PASS	END=231990546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	231990547	.	C	.	.	PASS	END=231990685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	231990686	.	T	.	.	PASS	END=231990749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	231990750	.	C	.	.	PASS	END=231990778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	232002218	.	G	.	.	PASS	END=232002261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	232002262	.	A	.	.	PASS	END=232002328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	232002329	.	A	.	.	PASS	END=232002345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	232002346	.	A	.	.	PASS	END=232002355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	232002356	.	G	.	.	PASS	END=232002375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	232094503	.	T	.	.	PASS	END=232094626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	232094627	.	C	.	.	PASS	END=232094637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	232094638	.	A	.	.	PASS	END=232094655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	232144530	.	G	.	.	PASS	END=232144537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	232144538	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:51:60
chr1	232144539	.	G	.	.	PASS	END=232144542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	232144543	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:72:60
chr1	232144544	.	C	.	.	PASS	END=232144555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:96:60
chr1	232144556	.	G	.	.	PASS	END=232144591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	232144592	.	A	.	.	PASS	END=232144621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	232144622	.	G	.	.	PASS	END=232144633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	232144634	.	G	.	.	PASS	END=232144659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	232144660	.	C	.	.	PASS	END=232144691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	232144692	.	G	.	.	PASS	END=232144803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	232144804	.	T	.	.	PASS	END=232144824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr1	232144825	.	G	.	.	PASS	END=232144848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	232144849	.	T	.	.	PASS	END=232144895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	232144896	.	A	.	.	PASS	END=232144900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	232162180	.	G	.	.	PASS	END=232162234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	232162235	.	A	.	.	PASS	END=232162302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	232162303	.	C	.	.	PASS	END=232162349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	232172437	.	C	.	.	PASS	END=232172536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	232172537	.	C	.	.	PASS	END=232172565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	232172566	.	G	.	.	PASS	END=232172574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	232172575	.	T	.	.	PASS	END=232172577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	232534871	.	G	.	.	LowGQX	END=232534955	GT	./.
chr1	232534956	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232534957	.	T	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	232534958	.	C	.	.	LowGQX	END=232534998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232534999	.	A	.	.	LowGQX	.	GT	./.
chr1	232535000	.	A	.	.	LowGQX	END=232535021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232538129	.	A	.	.	LowGQX	END=232538134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232538135	.	T	.	.	LowGQX	.	GT	./.
chr1	232538136	.	A	.	.	LowGQX	END=232538151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232538152	.	T	.	.	LowGQX	.	GT	./.
chr1	232538153	.	C	.	.	LowGQX	END=232538156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232538157	.	A	.	.	LowGQX	.	GT	./.
chr1	232538158	.	G	.	.	LowGQX	END=232538159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232538160	.	T	.	.	LowGQX	END=232538228	GT	./.
chr1	232539192	.	A	.	.	LowGQX	END=232539319	GT	./.
chr1	232539848	.	A	.	.	LowGQX	END=232539876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232539877	.	A	.	.	LowGQX	.	GT	./.
chr1	232539878	.	G	.	.	LowGQX	END=232539884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232539885	.	T	.	.	LowGQX	.	GT	./.
chr1	232539886	.	G	.	.	LowGQX	END=232539907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232539908	.	T	.	.	LowGQX	.	GT	./.
chr1	232539909	.	T	.	.	LowGQX	END=232539916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232539917	.	G	.	.	LowGQX	.	GT	./.
chr1	232539918	.	T	.	.	LowGQX	END=232539947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232551238	.	A	.	.	LowGQX	END=232551417	GT	./.
chr1	232561333	.	A	.	.	LowGQX	END=232561556	GT	./.
chr1	232564155	.	A	.	.	LowGQX	END=232564312	GT	./.
chr1	232567991	.	A	.	.	LowGQX	END=232568013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	232568014	.	G	.	4.69	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.01:60:0
chr1	232568015	.	G	.	.	LowGQX	END=232568016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	232568017	.	T	.	.	LowGQX	END=232568050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	232568051	.	A	.	.	LowGQX	.	GT	./.
chr1	232568052	.	G	.	.	LowGQX	END=232568076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	232568077	.	C	.	.	LowGQX	.	GT	./.
chr1	232568078	.	C	.	.	LowGQX	END=232568079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	232568080	.	T	.	.	LowGQX	.	GT	./.
chr1	232568081	.	G	.	.	LowGQX	END=232568097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	232568098	.	G	.	.	LowGQX	.	GT	./.
chr1	232568099	.	A	.	.	LowGQX	END=232568112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	232568113	.	A	.	.	LowGQX	.	GT	./.
chr1	232568114	.	C	.	.	LowGQX	END=232568122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232568123	.	C	.	.	LowGQX	.	GT	./.
chr1	232568124	.	G	.	.	LowGQX	END=232568127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232568128	.	C	.	.	LowGQX	END=232568147	GT	./.
chr1	232568148	.	T	.	.	LowGQX	END=232568156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232568157	.	A	.	.	LowGQX	.	GT	./.
chr1	232568158	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232568159	.	C	.	.	LowGQX	.	GT	./.
chr1	232568160	.	C	.	.	LowGQX	END=232568167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232568168	.	C	.	.	LowGQX	.	GT	./.
chr1	232568169	.	A	.	.	LowGQX	END=232568170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232568171	.	T	.	.	LowGQX	.	GT	./.
chr1	232568172	.	A	.	.	LowGQX	END=232568173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232568174	.	T	.	.	LowGQX	.	GT	./.
chr1	232568175	.	T	.	.	LowGQX	END=232568181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232568182	.	C	.	.	LowGQX	.	GT	./.
chr1	232568183	.	A	.	.	LowGQX	END=232568190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232568191	.	G	.	.	LowGQX	.	GT	./.
chr1	232568192	.	A	.	.	LowGQX	END=232568196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232568197	.	C	.	.	LowGQX	.	GT	./.
chr1	232568198	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232568199	.	T	.	.	LowGQX	.	GT	./.
chr1	232568200	.	C	.	.	LowGQX	END=232568208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232568209	.	T	.	.	LowGQX	END=232568210	GT	./.
chr1	232568211	.	A	.	.	LowGQX	END=232568215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232568216	.	C	.	.	LowGQX	.	GT	./.
chr1	232568217	.	A	.	.	LowGQX	END=232568219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232574852	.	A	.	.	LowGQX	END=232575244	GT	./.
chr1	232577035	.	A	.	.	LowGQX	END=232577164	GT	./.
chr1	232577165	.	G	.	.	LowGQX	END=232577180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232577181	.	G	.	.	LowGQX	.	GT	./.
chr1	232577182	.	T	.	.	LowGQX	END=232577194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232577512	.	A	.	.	LowGQX	END=232577616	GT	./.
chr1	232579340	.	A	.	.	LowGQX	END=232579431	GT	./.
chr1	232579432	.	C	.	.	LowGQX	END=232579439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232581262	.	G	.	.	LowGQX	END=232581276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232581277	.	C	.	.	LowGQX	END=232581518	GT	./.
chr1	232581519	.	G	.	.	LowGQX	END=232581541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232596631	.	A	.	.	LowGQX	END=232596727	GT	./.
chr1	232596728	.	G	.	.	LowGQX	END=232596909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232597910	.	C	.	.	LowGQX	END=232597917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	232597918	.	G	.	.	LowGQX	.	GT	./.
chr1	232597919	.	C	.	.	LowGQX	END=232597922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	232597923	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	232597924	.	C	.	.	LowGQX	END=232597938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	232597939	.	C	.	.	LowGQX	.	GT	./.
chr1	232597940	.	G	.	.	LowGQX	END=232597954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	232597955	.	C	.	.	LowGQX	.	GT	./.
chr1	232597956	.	C	.	.	LowGQX	END=232597974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	232597975	.	G	.	.	LowGQX	.	GT	./.
chr1	232597976	.	C	.	.	LowGQX	END=232597997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232597998	.	C	.	.	LowGQX	.	GT	./.
chr1	232597999	.	T	.	.	LowGQX	END=232598003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232598004	.	C	.	.	LowGQX	.	GT	./.
chr1	232598005	.	C	.	.	LowGQX	END=232598008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232598009	.	C	.	.	LowGQX	.	GT	./.
chr1	232600584	.	A	.	.	LowGQX	END=232600836	GT	./.
chr1	232600837	.	A	.	.	LowGQX	END=232600841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232600842	.	A	.	.	LowGQX	.	GT	./.
chr1	232600843	.	T	.	.	LowGQX	END=232600845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232600846	.	C	.	.	LowGQX	.	GT	./.
chr1	232600847	.	C	.	.	LowGQX	END=232600942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	232600943	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	232600944	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	232600945	.	T	.	.	LowGQX	.	GT	./.
chr1	232600946	.	G	.	.	LowGQX	END=232600997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232600998	.	C	.	.	LowGQX	END=232601164	GT	./.
chr1	232607085	.	G	.	.	LowGQX	END=232607276	GT	./.
chr1	232615371	.	A	.	.	LowGQX	END=232615478	GT	./.
chr1	232619516	.	C	.	.	LowGQX	END=232619519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232619520	.	C	.	.	LowGQX	.	GT	./.
chr1	232619521	.	A	.	.	LowGQX	END=232619546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232619547	.	C	.	.	LowGQX	END=232619568	GT	./.
chr1	232619569	.	A	.	.	LowGQX	END=232619580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232619581	.	T	.	.	LowGQX	.	GT	./.
chr1	232619582	.	C	.	.	LowGQX	END=232619592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232619593	.	G	.	.	LowGQX	.	GT	./.
chr1	232619594	.	C	.	.	LowGQX	END=232619714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232626618	.	A	.	.	LowGQX	END=232626639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232626640	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	232626641	.	C	.	.	LowGQX	END=232626661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232626662	.	T	.	.	LowGQX	.	GT	./.
chr1	232626663	.	G	.	.	LowGQX	END=232626684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232626685	.	A	.	.	LowGQX	END=232626810	GT	./.
chr1	232629271	.	A	.	.	LowGQX	END=232629408	GT	./.
chr1	232649601	.	A	.	.	LowGQX	END=232649634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232649635	.	G	.	.	LowGQX	END=232649667	GT	./.
chr1	232649668	.	T	.	.	LowGQX	END=232649695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232649696	.	T	.	.	LowGQX	.	GT	./.
chr1	232649697	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232649698	.	T	.	.	LowGQX	END=232649699	GT	./.
chr1	232649700	.	T	.	.	LowGQX	END=232649750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232649751	.	T	.	.	LowGQX	.	GT	./.
chr1	232649752	.	G	.	.	LowGQX	END=232649818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232649819	.	G	.	.	LowGQX	END=232650641	GT	./.
chr1	232650642	.	G	.	.	LowGQX	END=232650706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232650707	.	C	.	.	LowGQX	.	GT	./.
chr1	232650708	.	T	.	.	LowGQX	END=232650713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232650714	.	A	.	.	LowGQX	.	GT	./.
chr1	232650715	.	C	.	.	LowGQX	END=232650749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232650750	.	A	G	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	232650751	.	G	.	.	LowGQX	END=232650829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232650830	.	T	.	.	LowGQX	.	GT	./.
chr1	232650831	.	A	.	.	LowGQX	END=232650834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232650835	.	G	.	.	LowGQX	.	GT	./.
chr1	232650836	.	G	.	.	LowGQX	END=232650854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232650855	.	T	.	.	LowGQX	.	GT	./.
chr1	232650856	.	C	.	.	LowGQX	END=232650866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232650867	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	232650868	.	T	.	.	LowGQX	END=232650873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232650874	.	A	.	.	LowGQX	END=232651005	GT	./.
chr1	232651006	.	A	.	.	LowGQX	END=232651087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232940769	.	G	.	.	LowGQX	END=232941473	GT	./.
chr1	232941474	.	G	.	.	LowGQX	END=232941509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232941510	.	C	.	.	LowGQX	.	GT	./.
chr1	232941511	.	T	.	.	LowGQX	END=232941553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232941554	.	T	.	.	LowGQX	END=232941555	GT	./.
chr1	232941556	.	C	.	.	LowGQX	END=232941570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232941571	.	A	.	.	LowGQX	.	GT	./.
chr1	232941572	.	C	.	.	LowGQX	END=232941583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232941584	.	A	.	.	LowGQX	.	GT	./.
chr1	232941585	.	G	.	.	LowGQX	END=232941617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232941618	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	232941619	.	G	.	.	LowGQX	END=232941623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	232941624	.	G	.	.	LowGQX	.	GT	./.
chr1	232941625	.	C	.	.	LowGQX	END=232941632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232941633	.	C	.	.	LowGQX	.	GT	./.
chr1	232941634	.	G	.	.	LowGQX	END=232941670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232941671	.	G	.	.	LowGQX	.	GT	./.
chr1	232941672	.	G	.	.	LowGQX	END=232941734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232941735	.	C	.	.	LowGQX	END=232941818	GT	./.
chr1	232941819	.	T	.	.	LowGQX	END=232941847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232941848	.	T	C	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	232941849	.	G	.	.	LowGQX	END=232942053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232942054	.	G	.	.	LowGQX	END=232943180	GT	./.
chr1	232943181	.	G	.	.	LowGQX	END=232943340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232943341	.	A	.	.	LowGQX	.	GT	./.
chr1	232943342	.	G	.	.	LowGQX	END=232943357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232943358	.	A	.	.	LowGQX	.	GT	./.
chr1	232943359	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232943360	.	G	.	.	LowGQX	.	GT	./.
chr1	232943361	.	T	.	.	LowGQX	END=232943362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232943363	.	T	.	.	LowGQX	.	GT	./.
chr1	232943364	.	C	.	.	LowGQX	END=232943381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232943382	.	T	.	.	LowGQX	END=232943383	GT	./.
chr1	232943384	.	C	.	.	LowGQX	END=232943386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232943387	.	G	.	.	LowGQX	.	GT	./.
chr1	232943388	.	G	.	.	LowGQX	END=232943422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232943423	.	A	.	.	LowGQX	.	GT	./.
chr1	232943424	.	G	.	.	LowGQX	END=232943438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232943439	.	A	.	.	LowGQX	.	GT	./.
chr1	232943440	.	G	.	.	LowGQX	END=232943579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232943580	.	T	.	.	LowGQX	END=232943659	GT	./.
chr1	232943660	.	T	.	.	LowGQX	END=232943661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232943662	.	A	.	.	LowGQX	.	GT	./.
chr1	232943663	.	C	.	.	LowGQX	END=232943770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232943771	.	T	.	.	LowGQX	.	GT	./.
chr1	232943772	.	G	.	.	LowGQX	END=232943818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	232943819	.	A	.	.	LowGQX	END=232943913	GT	./.
chr1	233086364	.	T	.	.	LowGQX	END=233086395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233086396	.	T	.	.	LowGQX	END=233086523	GT	./.
chr1	233091301	.	A	.	.	LowGQX	END=233091490	GT	./.
chr1	233092091	.	A	.	.	LowGQX	END=233092191	GT	./.
chr1	233105653	.	A	.	.	LowGQX	END=233105686	GT	./.
chr1	233105687	.	G	.	.	LowGQX	END=233105691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233105692	.	T	.	.	LowGQX	.	GT	./.
chr1	233105693	.	C	.	.	LowGQX	END=233105699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233105700	.	G	.	.	LowGQX	.	GT	./.
chr1	233105701	.	A	.	.	LowGQX	END=233105713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233105714	.	G	.	.	LowGQX	.	GT	./.
chr1	233105715	.	G	.	.	LowGQX	END=233105716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233105717	.	G	.	.	LowGQX	.	GT	./.
chr1	233105718	.	C	.	.	LowGQX	END=233105728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233105729	.	G	T	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	233105730	.	C	.	.	LowGQX	END=233105734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233105735	.	C	.	.	LowGQX	.	GT	./.
chr1	233105736	.	A	.	.	LowGQX	END=233105741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233105742	.	G	.	.	LowGQX	END=233105743	GT	./.
chr1	233105744	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233105745	.	G	.	.	LowGQX	.	GT	./.
chr1	233105746	.	T	.	.	LowGQX	END=233105751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233105752	.	A	.	.	LowGQX	.	GT	./.
chr1	233105753	.	G	.	.	LowGQX	END=233105754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233105755	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	233105756	.	G	.	.	LowGQX	END=233105763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233105764	.	C	.	.	LowGQX	.	GT	./.
chr1	233105765	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	233105766	.	C	.	.	LowGQX	END=233105769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233105770	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	233105771	.	G	.	.	LowGQX	END=233105790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233105791	.	T	.	.	LowGQX	.	GT	./.
chr1	233105792	.	C	.	.	LowGQX	END=233105796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233105797	.	T	.	.	LowGQX	.	GT	./.
chr1	233105798	.	T	.	.	LowGQX	END=233105804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233105805	.	G	.	.	LowGQX	.	GT	./.
chr1	233105806	.	G	.	.	LowGQX	END=233105810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233105811	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	233105812	.	C	.	.	LowGQX	END=233105854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233105855	.	G	.	.	LowGQX	.	GT	./.
chr1	233105856	.	G	.	.	LowGQX	END=233105866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233112087	.	G	.	.	LowGQX	END=233112186	GT	./.
chr1	233112187	.	C	.	.	LowGQX	END=233112270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233113894	.	C	.	.	LowGQX	END=233113897	GT	./.
chr1	233113898	.	T	.	.	LowGQX	END=233113993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233120049	.	G	.	.	LowGQX	END=233120125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233120126	.	A	.	.	LowGQX	.	GT	./.
chr1	233120127	.	C	.	.	LowGQX	END=233120128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233120129	.	A	.	.	LowGQX	.	GT	./.
chr1	233120130	.	C	.	.	LowGQX	END=233120134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233120135	.	A	.	.	LowGQX	.	GT	./.
chr1	233120136	.	G	.	.	LowGQX	END=233120146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233120147	.	A	.	.	LowGQX	.	GT	./.
chr1	233120148	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233120149	.	A	.	.	LowGQX	.	GT	./.
chr1	233120150	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233120151	.	C	.	.	LowGQX	END=233120223	GT	./.
chr1	233121699	.	G	.	.	LowGQX	END=233121702	GT	./.
chr1	233121703	.	C	.	.	LowGQX	END=233121712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233121713	.	C	.	.	LowGQX	.	GT	./.
chr1	233121714	.	C	.	.	LowGQX	END=233121718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233121719	.	G	.	.	LowGQX	.	GT	./.
chr1	233121720	.	A	.	.	LowGQX	END=233121742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233121743	.	C	.	.	LowGQX	.	GT	./.
chr1	233121744	.	A	.	.	LowGQX	END=233121768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233121769	.	G	.	.	LowGQX	.	GT	./.
chr1	233121770	.	C	.	.	LowGQX	END=233121771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233121772	.	A	.	.	LowGQX	.	GT	./.
chr1	233121773	.	C	.	.	LowGQX	END=233121790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233121791	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	233121792	.	T	.	.	LowGQX	END=233121841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233121842	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	233121843	.	T	.	.	LowGQX	END=233121863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233121864	.	C	.	.	LowGQX	.	GT	./.
chr1	233121865	.	T	.	.	LowGQX	END=233121866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233121867	.	A	.	.	LowGQX	.	GT	./.
chr1	233121868	.	G	.	.	LowGQX	END=233121882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233121883	.	G	.	.	LowGQX	.	GT	./.
chr1	233121884	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233121885	.	T	.	.	LowGQX	END=233122236	GT	./.
chr1	233122237	.	G	.	.	LowGQX	END=233122286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233133996	.	C	.	.	LowGQX	END=233134081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233134082	.	A	.	.	LowGQX	END=233134176	GT	./.
chr1	233134177	.	T	.	.	LowGQX	END=233134195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233134850	.	C	.	.	LowGQX	END=233134887	GT	./.
chr1	233134888	.	C	.	.	LowGQX	END=233134889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233134890	.	A	.	.	LowGQX	.	GT	./.
chr1	233134891	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233134892	.	A	.	.	LowGQX	.	GT	./.
chr1	233134893	.	G	.	.	LowGQX	END=233134913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233134914	.	T	.	.	LowGQX	.	GT	./.
chr1	233134915	.	T	.	.	LowGQX	END=233134939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233134940	.	G	.	.	LowGQX	.	GT	./.
chr1	233134941	.	T	.	.	LowGQX	END=233134950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233134951	.	T	.	.	LowGQX	END=233134952	GT	./.
chr1	233134953	.	A	.	.	LowGQX	END=233134969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233134970	.	G	.	.	LowGQX	.	GT	./.
chr1	233134971	.	G	.	.	LowGQX	END=233134988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233134989	.	T	.	.	LowGQX	.	GT	./.
chr1	233134990	.	C	.	.	LowGQX	END=233135000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233135001	.	T	.	.	LowGQX	.	GT	./.
chr1	233135002	.	T	.	.	LowGQX	END=233135004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233135005	.	T	.	.	LowGQX	.	GT	./.
chr1	233135006	.	C	.	.	LowGQX	END=233135008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233135009	.	G	.	.	LowGQX	.	GT	./.
chr1	233135010	.	T	.	.	LowGQX	END=233135033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233135034	.	T	.	.	LowGQX	.	GT	./.
chr1	233135035	.	G	.	.	LowGQX	END=233135037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233135038	.	T	.	.	LowGQX	END=233135125	GT	./.
chr1	233135979	.	A	.	.	LowGQX	END=233136241	GT	./.
chr1	233136242	.	C	.	.	LowGQX	END=233136273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233136274	.	A	.	.	LowGQX	.	GT	./.
chr1	233136275	.	A	.	.	LowGQX	END=233136348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233137282	.	C	.	.	LowGQX	END=233137427	GT	./.
chr1	233150410	.	C	.	.	LowGQX	END=233150510	GT	./.
chr1	233150511	.	G	.	.	LowGQX	END=233150523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233152666	.	C	.	.	LowGQX	END=233152900	GT	./.
chr1	233160891	.	C	.	.	LowGQX	END=233160904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233160905	.	C	.	.	LowGQX	.	GT	./.
chr1	233160906	.	G	.	.	LowGQX	END=233161002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233161003	.	T	.	.	LowGQX	.	GT	./.
chr1	233161004	.	T	.	.	LowGQX	END=233161008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233161009	.	G	.	.	LowGQX	.	GT	./.
chr1	233161010	.	G	.	.	LowGQX	END=233161011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233161012	.	G	.	.	LowGQX	.	GT	./.
chr1	233161013	.	A	.	.	LowGQX	END=233161034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233161035	.	C	.	.	LowGQX	END=233161145	GT	./.
chr1	233190013	.	C	.	.	LowGQX	END=233190149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233190150	.	T	.	.	LowGQX	END=233190229	GT	./.
chr1	233192973	.	C	.	.	LowGQX	END=233192983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233192984	.	C	.	.	LowGQX	END=233192985	GT	./.
chr1	233192986	.	C	.	.	LowGQX	END=233192990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233192991	.	A	.	.	LowGQX	END=233192992	GT	./.
chr1	233192993	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233192994	.	T	.	.	LowGQX	.	GT	./.
chr1	233192995	.	T	.	.	LowGQX	END=233193001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233193002	.	C	.	.	LowGQX	END=233193003	GT	./.
chr1	233193004	.	A	.	.	LowGQX	END=233193006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233193007	.	C	.	.	LowGQX	.	GT	./.
chr1	233193008	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233193009	.	T	.	.	LowGQX	.	GT	./.
chr1	233193010	.	G	.	.	LowGQX	END=233193016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233193017	.	A	.	.	LowGQX	.	GT	./.
chr1	233193018	.	A	.	.	LowGQX	END=233193020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233193021	.	A	.	.	LowGQX	.	GT	./.
chr1	233193022	.	T	.	.	LowGQX	END=233193033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233193034	.	G	.	.	LowGQX	.	GT	./.
chr1	233193035	.	T	.	.	LowGQX	END=233193041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233193042	.	A	.	.	LowGQX	.	GT	./.
chr1	233193043	.	G	.	.	LowGQX	END=233193053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233193054	.	A	.	.	LowGQX	END=233193055	GT	./.
chr1	233193056	.	G	.	.	LowGQX	END=233193060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233193061	.	A	.	.	LowGQX	.	GT	./.
chr1	233193062	.	A	.	.	LowGQX	END=233193065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233193066	.	C	.	.	LowGQX	.	GT	./.
chr1	233193067	.	A	.	.	LowGQX	END=233193072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233225806	.	C	.	.	LowGQX	END=233225975	GT	./.
chr1	233231421	.	T	.	.	LowGQX	END=233231609	GT	./.
chr1	233248651	.	A	.	.	LowGQX	END=233248750	GT	./.
chr1	233270719	.	T	.	.	LowGQX	END=233270936	GT	./.
chr1	233275459	.	C	.	.	LowGQX	END=233275601	GT	./.
chr1	233296028	.	C	.	.	LowGQX	END=233296179	GT	./.
chr1	233297013	.	A	.	.	LowGQX	END=233297112	GT	./.
chr1	233313546	.	A	.	.	LowGQX	END=233313645	GT	./.
chr1	233314811	.	C	.	.	LowGQX	END=233314868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233314869	.	A	.	.	LowGQX	.	GT	./.
chr1	233314870	.	G	.	.	LowGQX	END=233314880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233314881	.	G	.	.	LowGQX	.	GT	./.
chr1	233314882	.	C	.	.	LowGQX	END=233314918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233314919	.	T	.	.	LowGQX	.	GT	./.
chr1	233314920	.	T	.	.	LowGQX	END=233314921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233334621	.	G	.	.	LowGQX	END=233334706	GT	./.
chr1	233334707	.	G	.	.	LowGQX	END=233334780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233335899	.	C	.	.	LowGQX	END=233335901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233335902	.	G	.	.	LowGQX	END=233335939	GT	./.
chr1	233335940	.	A	.	.	LowGQX	END=233335959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233335960	.	T	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	233335961	.	T	.	.	LowGQX	END=233336010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233337895	.	G	.	.	LowGQX	END=233337996	GT	./.
chr1	233344263	.	C	.	.	LowGQX	END=233344408	GT	./.
chr1	233344409	.	G	.	.	LowGQX	END=233344431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233344432	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	233344433	.	T	.	.	LowGQX	END=233344435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233353611	.	A	.	.	LowGQX	END=233353710	GT	./.
chr1	233353776	.	C	.	.	LowGQX	END=233353930	GT	./.
chr1	233362971	.	C	.	.	LowGQX	END=233362994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233362995	.	C	.	.	LowGQX	END=233363011	GT	./.
chr1	233363012	.	C	.	.	LowGQX	END=233363117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233372590	.	C	.	.	LowGQX	END=233372726	GT	./.
chr1	233386482	.	C	.	.	LowGQX	END=233386581	GT	./.
chr1	233388099	.	C	.	.	LowGQX	END=233388245	GT	./.
chr1	233388386	.	C	.	.	LowGQX	END=233388534	GT	./.
chr1	233393773	.	C	.	.	LowGQX	END=233394238	GT	./.
chr1	233394239	.	T	.	.	LowGQX	END=233394394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233394395	.	T	.	.	LowGQX	END=233394400	GT	./.
chr1	233394401	.	T	.	.	LowGQX	END=233394460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233394461	.	T	.	.	LowGQX	END=233394912	GT	./.
chr1	233394913	.	C	.	.	LowGQX	END=233395044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233395045	.	G	.	.	LowGQX	.	GT	./.
chr1	233395046	.	T	.	.	LowGQX	END=233395090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233396940	.	C	.	.	LowGQX	END=233397098	GT	./.
chr1	233397740	.	T	.	.	LowGQX	END=233397863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233397864	.	T	.	.	LowGQX	END=233397911	GT	./.
chr1	233398703	.	C	.	.	LowGQX	END=233398909	GT	./.
chr1	233431041	.	A	.	.	LowGQX	.	GT	./.
chr1	233431042	.	G	.	.	LowGQX	END=233431043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233431044	.	T	.	.	LowGQX	.	GT	./.
chr1	233431045	.	C	.	.	LowGQX	END=233431049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233431050	.	G	.	.	LowGQX	.	GT	./.
chr1	233431051	.	G	.	.	LowGQX	END=233431057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233431058	.	C	.	.	LowGQX	.	GT	./.
chr1	233431059	.	C	.	.	LowGQX	END=233431069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233431070	.	A	.	.	LowGQX	.	GT	./.
chr1	233431071	.	C	.	.	LowGQX	END=233431088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233431089	.	G	.	.	LowGQX	END=233431224	GT	./.
chr1	233463762	.	C	.	.	LowGQX	END=233463772	GT	./.
chr1	233463773	.	C	.	.	LowGQX	END=233463903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	233463904	.	G	.	.	LowGQX	END=233464581	GT	./.
chr1	233482186	.	A	.	.	LowGQX	END=233482415	GT	./.
chr1	233489551	.	A	.	.	LowGQX	END=233489552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233489553	.	C	.	.	LowGQX	.	GT	./.
chr1	233489554	.	T	.	.	LowGQX	END=233489555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233489556	.	T	.	.	LowGQX	.	GT	./.
chr1	233489557	.	G	.	.	LowGQX	END=233489560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233489561	.	T	.	.	LowGQX	.	GT	./.
chr1	233489562	.	G	.	.	LowGQX	END=233489568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233489569	.	T	.	.	LowGQX	.	GT	./.
chr1	233489570	.	G	.	.	LowGQX	END=233489578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233489579	.	T	.	.	LowGQX	.	GT	./.
chr1	233489580	.	C	.	.	LowGQX	END=233489588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233489589	.	A	.	.	LowGQX	.	GT	./.
chr1	233489590	.	G	.	.	LowGQX	END=233489598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233489599	.	C	.	.	LowGQX	.	GT	./.
chr1	233489600	.	G	.	.	LowGQX	END=233489602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233489603	.	G	.	.	LowGQX	.	GT	./.
chr1	233489604	.	C	.	.	LowGQX	END=233489609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233489610	.	T	.	.	LowGQX	.	GT	./.
chr1	233489611	.	G	.	.	LowGQX	END=233489612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233489613	.	C	.	.	LowGQX	.	GT	./.
chr1	233489614	.	C	.	.	LowGQX	END=233489628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233489629	.	G	.	.	LowGQX	.	GT	./.
chr1	233489630	.	G	.	.	LowGQX	END=233489638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233489639	.	T	.	.	LowGQX	END=233489703	GT	./.
chr1	233490560	.	A	.	.	LowGQX	END=233490617	GT	./.
chr1	233490618	.	T	.	.	LowGQX	END=233490626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233490627	.	T	.	.	LowGQX	.	GT	./.
chr1	233490628	.	T	.	.	LowGQX	END=233490736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233490737	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	233490738	.	A	.	.	LowGQX	END=233490759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233497797	.	A	.	.	LowGQX	END=233498041	GT	./.
chr1	233507782	.	A	.	.	LowGQX	END=233507944	GT	./.
chr1	233511618	.	A	.	.	LowGQX	END=233511837	GT	./.
chr1	233512124	.	T	.	.	LowGQX	END=233512275	GT	./.
chr1	233514675	.	A	.	.	LowGQX	END=233514699	GT	./.
chr1	233514700	.	T	.	.	LowGQX	END=233514775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233514776	.	G	.	.	LowGQX	.	GT	./.
chr1	233514777	.	G	.	.	LowGQX	END=233514850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233514851	.	T	.	.	LowGQX	END=233515458	GT	./.
chr1	233518049	.	A	.	.	LowGQX	END=233518067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233518068	.	T	.	.	LowGQX	END=233518459	GT	./.
chr1	233749916	.	A	.	.	LowGQX	END=233750274	GT	./.
chr1	233766980	.	T	.	.	LowGQX	END=233767079	GT	./.
chr1	233785687	.	G	.	.	LowGQX	END=233785795	GT	./.
chr1	233802339	.	A	.	.	LowGQX	END=233802738	GT	./.
chr1	233807015	.	A	.	.	LowGQX	.	GT	./.
chr1	233807016	.	G	.	.	LowGQX	END=233807183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	233807184	.	C	.	.	LowGQX	END=233807269	GT	./.
chr1	233807270	.	C	.	.	LowGQX	END=233807278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234040801	.	C	.	.	LowGQX	END=234040873	GT	./.
chr1	234040874	.	C	.	.	LowGQX	END=234040900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234041273	.	A	.	.	LowGQX	END=234041421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	234041422	.	G	C	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	234041423	.	G	.	.	LowGQX	END=234041437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	234041438	.	A	.	.	LowGQX	.	GT	./.
chr1	234041439	.	T	.	.	LowGQX	END=234041484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234041485	.	C	.	.	LowGQX	END=234041506	GT	./.
chr1	234350233	.	G	.	.	LowGQX	END=234350332	GT	./.
chr1	234367161	.	A	.	.	LowGQX	END=234367489	GT	./.
chr1	234444845	.	A	.	.	LowGQX	END=234445065	GT	./.
chr1	234445066	.	G	.	.	LowGQX	END=234445068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234452346	.	A	.	.	LowGQX	END=234452412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234452413	.	C	.	.	LowGQX	END=234452475	GT	./.
chr1	234454495	.	A	.	.	LowGQX	END=234454567	GT	./.
chr1	234454568	.	G	.	.	LowGQX	END=234454601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234454602	.	A	.	.	LowGQX	.	GT	./.
chr1	234454603	.	T	.	.	LowGQX	END=234454660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234454661	.	C	.	.	LowGQX	.	GT	./.
chr1	234454662	.	C	.	.	LowGQX	END=234454674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234454675	.	C	.	.	LowGQX	.	GT	./.
chr1	234454676	.	A	.	.	LowGQX	END=234454679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234454680	.	C	.	.	LowGQX	.	GT	./.
chr1	234454681	.	T	.	.	LowGQX	END=234454691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234455839	.	T	.	.	LowGQX	END=234455844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234455845	.	A	.	.	LowGQX	.	GT	./.
chr1	234455846	.	T	.	.	LowGQX	END=234455856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234455857	.	A	.	.	LowGQX	END=234455916	GT	./.
chr1	234455917	.	C	.	.	LowGQX	END=234455919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234455920	.	A	.	.	LowGQX	.	GT	./.
chr1	234455921	.	C	.	.	LowGQX	END=234455938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234458752	.	A	.	.	LowGQX	END=234458991	GT	./.
chr1	234509212	.	A	.	.	LowGQX	END=234509236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	234509237	.	A	.	.	LowGQX	.	GT	./.
chr1	234509238	.	G	.	.	LowGQX	END=234509258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	234509259	.	G	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	234509260	.	T	.	.	LowGQX	END=234509281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	234509282	.	T	.	.	LowGQX	.	GT	./.
chr1	234509283	.	C	.	.	LowGQX	END=234509323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	234509324	.	G	.	.	LowGQX	END=234509337	GT	./.
chr1	234509338	.	C	.	.	LowGQX	END=234509340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234509341	.	C	.	.	LowGQX	.	GT	./.
chr1	234509342	.	G	.	.	LowGQX	END=234509357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234509358	.	T	.	.	LowGQX	.	GT	./.
chr1	234509359	.	G	.	.	LowGQX	END=234509406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234509407	.	A	.	.	LowGQX	.	GT	./.
chr1	234509408	.	C	.	.	LowGQX	END=234509424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234509463	.	C	.	.	LowGQX	END=234509488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234509489	.	T	.	.	LowGQX	END=234509588	GT	./.
chr1	234509972	.	A	.	.	LowGQX	END=234510161	GT	./.
chr1	234519467	.	A	.	.	LowGQX	END=234519566	GT	./.
chr1	234527321	.	C	.	.	LowGQX	END=234527520	GT	./.
chr1	234528160	.	A	.	.	LowGQX	END=234528300	GT	./.
chr1	234529106	.	A	.	.	LowGQX	END=234529228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234529229	.	A	.	.	LowGQX	END=234529234	GT	./.
chr1	234529390	.	A	.	.	LowGQX	END=234529585	GT	./.
chr1	234534126	.	A	.	.	LowGQX	END=234534301	GT	./.
chr1	234536918	.	T	.	.	LowGQX	END=234536934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234536935	.	A	.	.	LowGQX	END=234537017	GT	./.
chr1	234541647	.	A	.	.	LowGQX	END=234541847	GT	./.
chr1	234546185	.	A	.	.	LowGQX	END=234546338	GT	./.
chr1	234553828	.	A	.	.	LowGQX	END=234554017	GT	./.
chr1	234556446	.	A	.	.	LowGQX	END=234556560	GT	./.
chr1	234561357	.	A	.	.	LowGQX	END=234561541	GT	./.
chr1	234563049	.	T	.	.	LowGQX	END=234563148	GT	./.
chr1	234563309	.	T	.	.	LowGQX	END=234563514	GT	./.
chr1	234564880	.	A	.	.	LowGQX	END=234565072	GT	./.
chr1	234565160	.	A	.	.	LowGQX	END=234565425	GT	./.
chr1	234565831	.	A	.	.	LowGQX	END=234566049	GT	./.
chr1	234569124	.	A	.	.	LowGQX	END=234569220	GT	./.
chr1	234569221	.	A	.	.	LowGQX	END=234569260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234569261	.	A	.	.	LowGQX	.	GT	./.
chr1	234569262	.	T	.	.	LowGQX	END=234569289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234569290	.	A	.	.	LowGQX	.	GT	./.
chr1	234569291	.	T	.	.	LowGQX	END=234569315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234569316	.	A	.	.	LowGQX	.	GT	./.
chr1	234569317	.	C	.	.	LowGQX	END=234569319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234573019	.	A	.	.	LowGQX	END=234573026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234573027	.	T	.	.	LowGQX	.	GT	./.
chr1	234573028	.	A	.	.	LowGQX	END=234573034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234573035	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	234573036	.	C	.	.	LowGQX	END=234573069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234573070	.	C	.	.	LowGQX	.	GT	./.
chr1	234573071	.	T	.	.	LowGQX	END=234573084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234573085	.	A	.	.	LowGQX	END=234573120	GT	./.
chr1	234582547	.	A	.	.	LowGQX	END=234582746	GT	./.
chr1	234584224	.	A	.	.	LowGQX	END=234584327	GT	./.
chr1	234586172	.	A	.	.	LowGQX	END=234586351	GT	./.
chr1	234593408	.	C	.	.	LowGQX	END=234593419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234593420	.	C	.	.	LowGQX	.	GT	./.
chr1	234593421	.	A	.	.	LowGQX	END=234593434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234593435	.	C	.	.	LowGQX	.	GT	./.
chr1	234593436	.	G	.	.	LowGQX	END=234593462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234593463	.	A	.	.	LowGQX	.	GT	./.
chr1	234593464	.	C	.	.	LowGQX	END=234593471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234593472	.	A	.	.	LowGQX	.	GT	./.
chr1	234593473	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234593474	.	G	.	.	LowGQX	.	GT	./.
chr1	234593475	.	T	.	.	LowGQX	END=234593481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234593482	.	A	.	.	LowGQX	END=234593560	GT	./.
chr1	234594974	.	A	.	.	LowGQX	END=234595074	GT	./.
chr1	234596005	.	A	.	.	LowGQX	END=234596144	GT	./.
chr1	234599581	.	A	.	.	LowGQX	END=234599682	GT	./.
chr1	234601379	.	T	.	.	LowGQX	END=234601478	GT	./.
chr1	234603246	.	A	.	.	LowGQX	END=234603398	GT	./.
chr1	234606862	.	A	.	.	LowGQX	END=234607018	GT	./.
chr1	234608458	.	A	.	.	LowGQX	END=234608617	GT	./.
chr1	234613906	.	A	.	.	LowGQX	END=234614855	GT	./.
chr1	234742881	.	A	.	.	LowGQX	END=234743091	GT	./.
chr1	234743092	.	C	.	.	LowGQX	END=234743127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	234743128	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	234743129	.	G	.	.	LowGQX	END=234743238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	234743239	.	C	.	.	LowGQX	END=234743420	GT	./.
chr1	234743421	.	G	.	.	LowGQX	END=234743432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234743433	.	G	.	.	LowGQX	.	GT	./.
chr1	234743434	.	C	.	.	LowGQX	END=234743451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234743452	.	A	.	.	LowGQX	.	GT	./.
chr1	234743453	.	C	.	.	LowGQX	END=234743478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234743479	.	G	.	.	LowGQX	.	GT	./.
chr1	234743480	.	G	.	.	LowGQX	END=234743482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234743483	.	C	.	.	LowGQX	.	GT	./.
chr1	234743484	.	T	.	.	LowGQX	END=234743486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234743487	.	A	.	.	LowGQX	.	GT	./.
chr1	234743488	.	G	.	.	LowGQX	END=234743512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234743513	.	C	.	.	LowGQX	.	GT	./.
chr1	234743514	.	G	.	.	LowGQX	END=234743533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234743534	.	C	.	.	LowGQX	.	GT	./.
chr1	234743535	.	T	.	.	LowGQX	END=234743537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234743538	.	G	.	.	LowGQX	.	GT	./.
chr1	234743539	.	G	.	.	LowGQX	END=234743551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234743552	.	A	.	.	LowGQX	.	GT	./.
chr1	234743553	.	C	.	.	LowGQX	END=234743558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234743559	.	G	.	.	LowGQX	.	GT	./.
chr1	234743560	.	G	.	.	LowGQX	END=234743571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234743572	.	G	.	.	LowGQX	END=234743583	GT	./.
chr1	234743584	.	T	.	.	LowGQX	END=234743586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234743587	.	C	.	.	LowGQX	.	GT	./.
chr1	234743588	.	T	.	.	LowGQX	END=234743595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234743596	.	C	.	.	LowGQX	.	GT	./.
chr1	234743597	.	A	.	.	LowGQX	END=234743598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234743599	.	C	.	.	LowGQX	.	GT	./.
chr1	234743600	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	234744191	.	A	.	.	LowGQX	END=234745243	GT	./.
chr1	235275297	.	C	.	.	LowGQX	END=235275451	GT	./.
chr1	235277081	.	A	.	.	LowGQX	END=235277227	GT	./.
chr1	235283124	.	G	.	.	LowGQX	END=235283223	GT	./.
chr1	235285615	.	A	.	.	LowGQX	END=235285626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235285627	.	A	.	.	LowGQX	END=235285628	GT	./.
chr1	235285629	.	C	.	.	LowGQX	END=235285630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235285631	.	A	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	235285632	.	G	.	.	LowGQX	END=235285636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235285637	.	T	.	.	LowGQX	.	GT	./.
chr1	235285638	.	T	.	.	LowGQX	END=235285642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235285643	.	T	.	.	LowGQX	.	GT	./.
chr1	235285644	.	G	.	.	LowGQX	END=235285712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235285713	.	A	.	.	LowGQX	END=235285768	GT	./.
chr1	235291118	.	A	.	.	LowGQX	END=235291133	GT	./.
chr1	235291134	.	A	.	.	LowGQX	END=235291223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	235291224	.	G	.	.	LowGQX	END=235291252	GT	./.
chr1	235291908	.	A	.	.	LowGQX	END=235292032	GT	./.
chr1	235295026	.	T	.	.	LowGQX	END=235295314	GT	./.
chr1	235298965	.	A	.	.	LowGQX	END=235299040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235299041	.	T	.	.	LowGQX	.	GT	./.
chr1	235299042	.	T	.	.	LowGQX	END=235299046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235299047	.	A	.	.	LowGQX	END=235299087	GT	./.
chr1	235299319	.	A	.	.	LowGQX	END=235299371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235299372	.	A	.	.	LowGQX	.	GT	./.
chr1	235299373	.	C	.	.	LowGQX	END=235299418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235301174	.	A	.	.	LowGQX	END=235301273	GT	./.
chr1	235301398	.	A	.	.	LowGQX	END=235301497	GT	./.
chr1	235311691	.	G	.	.	LowGQX	END=235311790	GT	./.
chr1	235315991	.	T	.	.	LowGQX	END=235316090	GT	./.
chr1	235318154	.	A	.	.	LowGQX	END=235318417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235318418	.	A	.	.	LowGQX	END=235318493	GT	./.
chr1	235319903	.	C	.	.	LowGQX	END=235320002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235323558	.	C	.	.	LowGQX	END=235323657	GT	./.
chr1	235323824	.	A	.	.	LowGQX	END=235323964	GT	./.
chr1	235324206	.	A	.	.	LowGQX	END=235324212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235324213	.	G	.	.	LowGQX	.	GT	./.
chr1	235324214	.	C	.	.	LowGQX	END=235324215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235324216	.	C	.	.	LowGQX	.	GT	./.
chr1	235324217	.	A	.	.	LowGQX	END=235324227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235324228	.	C	.	.	LowGQX	END=235324275	GT	./.
chr1	235324276	.	C	.	.	LowGQX	END=235324285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235324286	.	T	.	.	LowGQX	.	GT	./.
chr1	235324287	.	C	.	.	LowGQX	END=235324335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235324336	.	T	.	.	LowGQX	.	GT	./.
chr1	235324337	.	G	.	.	LowGQX	END=235324384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235324487	.	A	.	.	LowGQX	END=235324772	GT	./.
chr1	235331838	.	T	.	.	LowGQX	END=235331969	GT	./.
chr1	235335931	.	A	.	.	LowGQX	END=235336081	GT	./.
chr1	235338497	.	A	.	.	LowGQX	END=235338716	GT	./.
chr1	235340164	.	C	.	.	LowGQX	END=235340196	GT	./.
chr1	235340197	.	G	.	.	LowGQX	END=235340263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	235341089	.	T	.	.	LowGQX	END=235341095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235341096	.	T	.	.	LowGQX	.	GT	./.
chr1	235341097	.	T	.	.	LowGQX	END=235341114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235341115	.	T	.	.	LowGQX	.	GT	./.
chr1	235341116	.	G	.	.	LowGQX	END=235341204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235341205	.	T	.	.	LowGQX	END=235341230	GT	./.
chr1	235344865	.	C	.	.	LowGQX	END=235346110	GT	./.
chr1	235350355	.	C	.	.	LowGQX	END=235350360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235350361	.	C	.	.	LowGQX	.	GT	./.
chr1	235350362	.	T	.	.	LowGQX	END=235350366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235350367	.	C	.	.	LowGQX	.	GT	./.
chr1	235350368	.	T	.	.	LowGQX	END=235350371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235350372	.	C	.	.	LowGQX	.	GT	./.
chr1	235350373	.	T	.	.	LowGQX	END=235350382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235350383	.	C	.	.	LowGQX	.	GT	./.
chr1	235350384	.	A	.	.	LowGQX	END=235350411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235350412	.	T	.	.	LowGQX	.	GT	./.
chr1	235350413	.	G	.	.	LowGQX	END=235350418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235350419	.	G	.	.	LowGQX	END=235350420	GT	./.
chr1	235350421	.	A	.	.	LowGQX	END=235350429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235350430	.	C	.	.	LowGQX	.	GT	./.
chr1	235350431	.	C	.	.	LowGQX	END=235350436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235350437	.	C	.	.	LowGQX	.	GT	./.
chr1	235350438	.	C	.	.	LowGQX	END=235350441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235350442	.	G	.	.	LowGQX	.	GT	./.
chr1	235350443	.	C	.	.	LowGQX	END=235350454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235357326	.	A	.	.	LowGQX	END=235357528	GT	./.
chr1	235359274	.	T	.	.	LowGQX	END=235359438	GT	./.
chr1	235377082	.	A	.	.	LowGQX	END=235377343	GT	./.
chr1	235383086	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235383087	.	A	.	.	LowGQX	END=235383088	GT	./.
chr1	235383089	.	C	.	.	LowGQX	END=235383092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235383093	.	A	.	.	LowGQX	END=235383094	GT	./.
chr1	235383095	.	A	.	.	LowGQX	END=235383098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235383099	.	T	.	.	LowGQX	END=235383101	GT	./.
chr1	235383102	.	T	.	.	LowGQX	END=235383103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235383104	.	T	.	.	LowGQX	END=235383105	GT	./.
chr1	235383106	.	A	.	.	LowGQX	END=235383110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235383111	.	G	.	.	LowGQX	END=235383112	GT	./.
chr1	235383113	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235383114	.	T	.	.	LowGQX	.	GT	./.
chr1	235383115	.	T	.	.	LowGQX	END=235383119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235383120	.	T	.	.	LowGQX	END=235383122	GT	./.
chr1	235383123	.	T	.	.	LowGQX	END=235383124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235383125	.	T	.	.	LowGQX	.	GT	./.
chr1	235383126	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235383127	.	C	.	.	LowGQX	.	GT	./.
chr1	235383128	.	C	.	.	LowGQX	END=235383130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235383131	.	A	.	.	LowGQX	.	GT	./.
chr1	235383132	.	G	.	.	LowGQX	END=235383133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235383134	.	T	.	.	LowGQX	.	GT	./.
chr1	235383135	.	T	.	.	LowGQX	END=235383151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235383152	.	G	.	.	LowGQX	END=235383153	GT	./.
chr1	235383154	.	A	.	.	LowGQX	END=235383164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235383165	.	C	.	.	LowGQX	.	GT	./.
chr1	235383166	.	T	.	.	LowGQX	END=235383169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235383170	.	T	.	.	LowGQX	.	GT	./.
chr1	235383171	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235383172	.	T	.	.	LowGQX	END=235383285	GT	./.
chr1	235383615	.	A	.	.	LowGQX	END=235383827	GT	./.
chr1	235383828	.	G	.	.	LowGQX	END=235383862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235384878	.	A	.	.	LowGQX	END=235384979	GT	./.
chr1	235386409	.	T	.	.	LowGQX	END=235386578	GT	./.
chr1	235387946	.	C	.	.	LowGQX	END=235388104	GT	./.
chr1	235392528	.	T	.	.	LowGQX	END=235392545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235392546	.	T	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	235392547	.	T	.	.	LowGQX	END=235392727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235394366	.	A	.	.	LowGQX	END=235394516	GT	./.
chr1	235397666	.	T	.	.	LowGQX	END=235397791	GT	./.
chr1	235397792	.	A	.	.	LowGQX	END=235397817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235403626	.	A	.	.	LowGQX	END=235403763	GT	./.
chr1	235403764	.	G	.	.	LowGQX	END=235403850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235409731	.	T	.	.	LowGQX	END=235409830	GT	./.
chr1	235416035	.	G	.	.	LowGQX	END=235416134	GT	./.
chr1	235418971	.	T	.	.	LowGQX	END=235418981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235418982	.	G	.	.	LowGQX	END=235419070	GT	./.
chr1	235420458	.	A	.	.	LowGQX	END=235420557	GT	./.
chr1	235423955	.	A	.	.	LowGQX	END=235424114	GT	./.
chr1	235490182	.	C	.	.	LowGQX	END=235490197	GT	./.
chr1	235490198	.	C	.	.	LowGQX	END=235490281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235498565	.	T	.	.	LowGQX	END=235498664	GT	./.
chr1	235504951	.	G	.	.	LowGQX	END=235505085	GT	./.
chr1	235505086	.	A	.	.	LowGQX	END=235505108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	235505324	.	A	.	.	LowGQX	END=235506089	GT	./.
chr1	235543314	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:45:59
chr1	235543315	.	G	.	66.10	PASS	DP=23;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:18:23:36.10:59:36
chr1	235543316	.	T	.	.	PASS	END=235543323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:59
chr1	235543324	.	T	.	.	PASS	END=235543328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:59
chr1	235543329	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:9:59
chr1	235543330	.	C	.	.	PASS	END=235543335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:59
chr1	235543336	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:48:59
chr1	235543337	.	T	.	.	PASS	END=235543352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:59
chr1	235543353	.	G	.	.	PASS	END=235543358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:59
chr1	235543359	.	A	.	.	PASS	END=235543458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:59
chr1	235543459	.	T	.	.	PASS	END=235543477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	235543478	.	G	.	.	PASS	END=235543490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	235543491	.	T	.	.	PASS	END=235543492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	235543493	.	T	.	.	PASS	END=235543494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	235543495	.	T	.	15.45	LowGQX	DP=15;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:11:13:0.15:60:0
chr1	235543496	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr1	235543497	.	T	.	.	LowGQX	END=235543500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr1	235543501	.	T	.	.	LowGQX	END=235543505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	235543506	.	G	.	.	LowGQX	END=235543508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	235543509	.	T	.	.	LowGQX	END=235543510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	235543511	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	235543512	.	G	.	.	LowGQX	END=235543515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	235564767	.	C	.	.	PASS	END=235564841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	235564842	.	A	.	.	PASS	END=235564856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	235564857	.	G	.	.	PASS	END=235564884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	235564885	.	T	.	.	PASS	END=235564924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	235564925	.	C	.	.	PASS	END=235564953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	235577697	.	C	.	.	PASS	END=235577698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:57:60
chr1	235577699	.	T	.	.	PASS	END=235577750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	235577751	.	C	.	.	PASS	END=235577804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	235577805	.	T	.	.	PASS	END=235577839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	235577840	.	A	.	.	PASS	END=235577899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	235577900	.	C	.	.	PASS	END=235577901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	235577902	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:48:60
chr1	235577903	.	T	.	.	PASS	END=235577924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:59
chr1	235577925	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:66:59
chr1	235577926	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:27:59
chr1	235577927	.	A	.	.	PASS	END=235577951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:59
chr1	235577952	.	G	.	.	PASS	END=235577971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	235577972	.	T	.	.	PASS	END=235577984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	235582722	.	T	.	.	PASS	END=235582738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	235582739	.	G	.	.	PASS	END=235582747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	235582748	.	A	.	.	PASS	END=235582800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	235582801	.	T	.	.	PASS	END=235582880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	235582881	.	C	.	.	PASS	END=235582891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	235582892	.	A	.	.	PASS	END=235582905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	235582906	.	G	.	.	PASS	END=235582927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	235590404	.	A	.	.	PASS	END=235590440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	235590441	.	A	.	.	PASS	END=235590523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	235590524	.	A	.	.	PASS	END=235590551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:93:60
chr1	235590552	.	C	.	.	PASS	END=235590558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	235590559	.	G	A	489.53	PASS	BaseQRankSum=1.704;DP=48;Dels=0.00;FS=1.361;HRun=2;HaplotypeScore=4.8298;MQ=60;MQ0=0;MQRankSum=-0.617;QD=10.20;ReadPosRankSum=1.934;SB=-163.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,20:48:99:520,0,799:60:99:0.417
chr1	235590560	.	A	.	.	PASS	END=235590586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	235590587	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:69:60
chr1	235590588	.	A	.	.	PASS	END=235590605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	235593969	.	T	.	.	PASS	END=235593975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	235593976	.	T	.	.	PASS	END=235593979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	235593980	.	G	.	.	PASS	END=235593994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	235593995	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:42:60
chr1	235593996	.	A	.	.	PASS	END=235594006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	235594007	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:59:60
chr1	235594008	.	T	.	.	PASS	END=235594011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	235594012	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:30:60
chr1	235594013	.	T	.	.	PASS	END=235594045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:86:60
chr1	235594046	.	G	.	.	PASS	END=235594061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	235594062	.	A	.	.	PASS	END=235594093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	235594094	.	A	.	.	PASS	END=235594159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	235594160	.	T	.	.	PASS	END=235594170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	235596260	.	G	.	.	LowGQX	END=235596413	GT	./.
chr1	235597468	.	A	.	.	PASS	END=235597487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	235597488	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:33:60
chr1	235597489	.	G	.	.	PASS	END=235597515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	235597516	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:49:60
chr1	235597517	.	A	.	.	PASS	END=235597526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	235597527	.	G	.	.	PASS	END=235597545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	235597546	.	G	.	.	PASS	END=235597583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	235597584	.	C	.	.	PASS	END=235597646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	235599009	.	A	.	.	PASS	END=235599038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	235599039	.	A	.	.	PASS	END=235599087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	235599088	.	T	.	.	PASS	END=235599186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	235599187	.	T	.	.	PASS	END=235599206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	235599650	.	A	.	.	PASS	END=235599659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	235599660	.	A	.	.	PASS	END=235599699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	235599700	.	G	.	.	PASS	END=235599796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	235599797	.	C	.	.	PASS	END=235599941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	235599942	.	A	.	.	PASS	END=235599947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	235599948	.	A	.	.	PASS	END=235599952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	235599953	.	A	.	.	PASS	END=235599963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:87:60
chr1	235599964	.	T	.	.	PASS	END=235599974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	235600586	.	A	.	.	PASS	END=235600622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	235600623	.	T	.	.	PASS	END=235600671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	235600672	.	T	.	.	PASS	END=235600720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	235600721	.	G	.	.	PASS	END=235600765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	235600766	.	C	.	.	PASS	END=235600800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	235600801	.	C	.	.	PASS	END=235600803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	235600804	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:55:60
chr1	235600805	.	A	.	.	PASS	END=235600814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	235600815	.	A	.	.	PASS	END=235600828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	235600829	.	A	.	.	PASS	END=235600840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr1	235602033	.	T	.	.	PASS	END=235602058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	235602059	.	T	.	.	PASS	END=235602086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	235602087	.	C	.	.	PASS	END=235602099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	235602100	.	G	.	.	PASS	END=235602103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	235602104	.	G	.	.	PASS	END=235602226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	235602227	.	C	.	.	PASS	END=235602250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	235602251	.	C	.	.	PASS	END=235602253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	235602254	.	T	.	.	PASS	END=235602267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	235602268	.	T	.	.	PASS	END=235602281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	235602282	.	C	.	.	PASS	END=235602288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	235605078	.	A	.	.	PASS	END=235605096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	235605097	.	T	.	.	PASS	END=235605127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	235605128	.	G	.	.	PASS	END=235605182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	235605183	.	A	.	.	PASS	END=235605248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	235606116	.	A	.	.	PASS	END=235606133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	235606134	.	A	.	.	PASS	END=235606240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	235606241	.	C	.	.	PASS	END=235606268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	235606269	.	C	.	.	PASS	END=235606277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	235611613	.	C	.	.	PASS	END=235611653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:96:60
chr1	235611654	.	C	.	.	PASS	END=235611667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	235611668	.	C	.	.	PASS	END=235611731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	235611732	.	C	.	.	PASS	END=235611806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	235611934	.	T	.	.	PASS	END=235611967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	235611968	.	C	.	.	PASS	END=235612066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	235612067	.	T	.	.	PASS	END=235612081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	235612082	.	C	.	.	PASS	END=235612112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	235612113	.	A	.	.	PASS	END=235612118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	235612119	.	T	.	.	PASS	END=235612128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	235613519	.	T	.	.	LowGQX	END=235613531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235613532	.	G	.	.	LowGQX	.	GT	./.
chr1	235613533	.	A	.	.	LowGQX	END=235613534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235613535	.	A	.	.	LowGQX	.	GT	./.
chr1	235613536	.	T	.	.	LowGQX	END=235613541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235613542	.	A	.	.	LowGQX	.	GT	./.
chr1	235613543	.	G	.	.	LowGQX	END=235613545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235613546	.	T	.	.	LowGQX	.	GT	./.
chr1	235613547	.	C	.	.	LowGQX	END=235613550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235613551	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	235613552	.	C	.	.	LowGQX	END=235613556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235613557	.	T	.	.	LowGQX	.	GT	./.
chr1	235613558	.	T	.	.	LowGQX	END=235613566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235613567	.	T	.	.	LowGQX	.	GT	./.
chr1	235613568	.	T	.	.	LowGQX	END=235613579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235613580	.	T	.	.	LowGQX	.	GT	./.
chr1	235613581	.	C	.	.	LowGQX	END=235613583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235613584	.	T	.	.	LowGQX	END=235613585	GT	./.
chr1	235613586	.	C	.	.	LowGQX	END=235613621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235613622	.	T	.	.	LowGQX	END=235613657	GT	./.
chr1	235616381	.	A	.	.	LowGQX	END=235616480	GT	./.
chr1	235617466	.	A	.	.	LowGQX	END=235617629	GT	./.
chr1	235618869	.	A	.	.	LowGQX	END=235618878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235618879	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	235618880	.	C	.	.	LowGQX	END=235618926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235618927	.	A	.	.	LowGQX	END=235618998	GT	./.
chr1	235621909	.	A	.	.	LowGQX	END=235622096	GT	./.
chr1	235628935	.	T	.	.	LowGQX	END=235629012	GT	./.
chr1	235629013	.	G	.	.	LowGQX	END=235629019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235629020	.	A	.	.	LowGQX	.	GT	./.
chr1	235629021	.	C	.	.	LowGQX	END=235629034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235634162	.	A	.	.	LowGQX	END=235634276	GT	./.
chr1	235643368	.	A	.	.	LowGQX	END=235643418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	235643419	.	T	.	.	LowGQX	END=235643467	GT	./.
chr1	235647636	.	A	.	.	LowGQX	END=235647833	GT	./.
chr1	235652471	.	A	.	.	LowGQX	END=235652575	GT	./.
chr1	235657989	.	A	.	.	LowGQX	END=235658140	GT	./.
chr1	235659495	.	C	.	.	LowGQX	END=235659663	GT	./.
chr1	235667439	.	A	.	.	LowGQX	END=235667597	GT	./.
chr1	235715407	.	A	.	.	LowGQX	END=235715539	GT	./.
chr1	235747038	.	A	.	.	LowGQX	END=235747140	GT	./.
chr1	235826189	.	A	.	.	PASS	END=235826203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	235826204	.	T	.	.	PASS	END=235826211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr1	235826212	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:63:60
chr1	235826213	.	T	.	.	PASS	END=235826249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	235826250	.	G	.	.	PASS	END=235826284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	235826285	.	T	.	.	PASS	END=235826382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	235826383	.	A	.	.	PASS	END=235826417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	235826418	.	C	.	.	PASS	END=235826429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr1	235827233	.	A	.	.	PASS	END=235827355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	235827356	.	C	.	.	PASS	END=235827406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	235827714	.	C	.	.	PASS	END=235827848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	235827849	.	A	.	.	PASS	END=235827865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr1	235827866	.	A	.	.	PASS	END=235827888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	235827889	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:45:60
chr1	235827890	.	C	.	.	PASS	END=235827893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	235827894	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:36:60
chr1	235827895	.	A	.	.	PASS	END=235827925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	235827926	.	A	.	.	PASS	END=235827929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	235827930	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:33:60
chr1	235827931	.	C	.	.	PASS	END=235827953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	235827954	.	G	.	.	PASS	END=235827960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	235827961	.	G	.	.	PASS	END=235827964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	235827965	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	235827966	.	C	.	.	PASS	END=235827972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	235840340	.	G	.	.	PASS	END=235840378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	235840379	.	G	.	.	PASS	END=235840402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	235840403	.	C	.	.	PASS	END=235840441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	235840442	.	C	.	.	PASS	END=235840490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	235840491	.	G	.	.	PASS	END=235840539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	235840729	.	A	.	.	PASS	END=235840834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	235840835	.	T	.	.	PASS	END=235840841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	235840842	.	T	.	.	PASS	END=235840876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	235840877	.	G	.	.	PASS	END=235840919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr1	235840920	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:51:60
chr1	235840921	.	T	.	.	PASS	END=235840952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	235840953	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:68:60
chr1	235840954	.	A	.	.	PASS	END=235840970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	235850198	.	T	.	.	PASS	END=235850213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	235850214	.	G	.	.	PASS	END=235850225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	235850226	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:60:60
chr1	235850227	.	C	.	.	PASS	END=235850243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	235850244	.	C	.	.	PASS	END=235850280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:96:60
chr1	235850281	.	T	.	.	PASS	END=235850364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	235850365	.	T	.	.	PASS	END=235850395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	235850396	.	C	.	.	PASS	END=235850398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	235856599	.	A	.	.	PASS	END=235856636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	235856637	.	A	.	.	PASS	END=235856692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	235856693	.	C	.	.	PASS	END=235856745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	235856746	.	G	.	.	PASS	END=235856768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	235856769	.	T	.	.	PASS	END=235856787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	235856788	.	T	.	.	PASS	END=235856796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	235856797	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:72:60
chr1	235856798	.	G	.	.	PASS	END=235856821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	235856822	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr1	235856823	.	A	.	.	PASS	END=235856832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	235856833	.	T	.	.	PASS	END=235856837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	235860332	.	A	.	.	PASS	END=235860354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	235860355	.	G	.	.	PASS	END=235860386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	235860387	.	T	.	.	PASS	END=235860461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	235860462	.	A	.	.	PASS	END=235860491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	235860492	.	G	.	.	PASS	END=235860506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	235860507	.	T	.	.	PASS	END=235860516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	235860517	.	C	.	.	PASS	END=235860536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	235860537	.	C	.	.	PASS	END=235860539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	235860540	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:12:60
chr1	235860541	.	C	.	.	PASS	END=235860552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	235860553	.	T	.	.	PASS	END=235860554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	235860555	.	T	.	.	PASS	END=235860567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	235860568	.	G	.	.	PASS	END=235860569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	235860570	.	A	.	.	PASS	END=235860588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	235860589	.	T	.	.	PASS	END=235860621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	235860622	.	T	.	.	PASS	END=235860623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr1	235865996	.	C	.	.	PASS	END=235866030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	235866031	.	A	.	.	PASS	END=235866069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	235866070	.	G	.	.	PASS	END=235866219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	235866220	.	C	.	.	PASS	END=235866246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	235866247	.	C	.	.	PASS	END=235866293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	235866294	.	T	.	.	PASS	END=235866313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	235866314	.	A	.	.	PASS	END=235866328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	235872340	.	A	.	.	PASS	END=235872352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	235872353	.	C	.	.	PASS	END=235872383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	235872384	.	C	.	.	PASS	END=235872405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	235872406	.	A	.	.	PASS	END=235872444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	235872445	.	C	.	.	PASS	END=235872543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	235872544	.	C	.	.	PASS	END=235872567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	235872568	.	A	.	.	PASS	END=235872591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	235872592	.	C	.	.	PASS	END=235872628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	235872629	.	T	.	.	PASS	END=235872646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	235872647	.	C	.	.	PASS	END=235872659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	235875306	.	A	.	.	PASS	END=235875311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	235875312	.	C	.	.	PASS	END=235875317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	235875318	.	C	.	.	PASS	END=235875321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	235875322	.	C	.	.	PASS	END=235875349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	235875350	.	G	.	.	PASS	END=235875361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	235875362	.	C	.	.	PASS	END=235875378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	235875379	.	T	.	.	PASS	END=235875402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	235875403	.	A	.	.	PASS	END=235875506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	235875507	.	A	.	.	PASS	END=235875526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	235875527	.	G	.	.	PASS	END=235875544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	235875545	.	T	.	.	PASS	END=235875548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	235878450	.	G	.	.	PASS	END=235878493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:79:60
chr1	235878494	.	T	.	.	PASS	END=235878558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	235878559	.	A	.	.	PASS	END=235878582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	235878583	.	G	.	.	PASS	END=235878604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	235878605	.	G	.	.	PASS	END=235878609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	235878610	.	C	.	.	PASS	END=235878616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:60
chr1	235878617	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:42:60
chr1	235878618	.	C	.	.	PASS	END=235878640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	235878641	.	T	.	.	PASS	END=235878645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	235878646	.	T	.	.	PASS	END=235878663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	235878664	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	235878665	.	A	.	.	PASS	END=235878670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	235878671	.	T	.	.	PASS	END=235878672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	235878673	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:51:60
chr1	235878674	.	A	.	.	PASS	END=235878675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	235878676	.	C	.	.	PASS	END=235878688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	235878689	.	G	.	.	PASS	END=235878690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	235878691	.	T	.	.	PASS	END=235878696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	235878697	.	G	.	.	PASS	END=235878698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	235878699	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr1	235878700	.	C	.	.	PASS	END=235878701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr1	235878702	.	A	.	.	PASS	END=235878708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	235879961	.	A	.	.	PASS	END=235879995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	235879996	.	T	.	.	PASS	END=235880074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	235880075	.	A	.	.	PASS	END=235880129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	235883910	.	A	.	.	PASS	END=235883915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	235883916	.	C	.	.	PASS	END=235883931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	235883932	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:33:60
chr1	235883933	.	C	.	.	PASS	END=235883965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	235883966	.	T	.	.	PASS	END=235884002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	235884003	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:63:60
chr1	235884004	.	A	.	.	PASS	END=235884027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	235884028	.	C	.	.	PASS	END=235884043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	235884044	.	A	.	.	PASS	END=235884119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	235884120	.	A	.	.	PASS	END=235884170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	235884171	.	T	.	.	PASS	END=235884180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	235884181	.	T	.	.	PASS	END=235884186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr1	235884187	.	G	.	.	PASS	END=235884192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	235884193	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:39:60
chr1	235884194	.	A	.	.	PASS	END=235884198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	235884199	.	C	.	.	PASS	END=235884216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	235884217	.	G	.	.	PASS	END=235884225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	235884226	.	A	.	.	PASS	END=235884229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	235884230	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr1	235884231	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:54:60
chr1	235884232	.	C	.	.	PASS	END=235884246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	235887277	.	T	.	.	PASS	END=235887289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	235887290	.	C	.	.	PASS	END=235887316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	235887317	.	G	.	.	PASS	END=235887336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	235887337	.	A	.	.	PASS	END=235887430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	235887431	.	T	.	.	PASS	END=235887466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	235887467	.	T	.	.	PASS	END=235887478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	235887479	.	C	.	.	PASS	END=235887496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	235887497	.	G	.	.	PASS	END=235887499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	235887500	.	A	.	.	PASS	END=235887529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	235887530	.	A	.	.	PASS	END=235887531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	235891325	.	T	.	.	PASS	END=235891340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	235891341	.	G	.	.	PASS	END=235891362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	235891363	.	A	.	.	PASS	END=235891450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	235891451	.	A	.	.	PASS	END=235891479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	235891480	.	A	.	.	PASS	END=235891482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	235892845	.	A	.	.	PASS	END=235892937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	235892938	.	T	.	.	PASS	END=235893008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	235894096	.	T	.	.	PASS	END=235894102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	235894103	.	T	.	.	PASS	END=235894125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	235894126	.	G	.	.	PASS	END=235894158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	235894159	.	C	.	.	PASS	END=235894275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	235894276	.	C	.	.	PASS	END=235894318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	235894319	.	A	.	.	PASS	END=235894348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	235894349	.	T	.	.	PASS	END=235894451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	235894452	.	A	.	.	PASS	END=235894468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	235894469	.	C	.	.	PASS	END=235894473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	235894474	.	T	.	.	PASS	END=235894494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	235894495	.	A	.	.	PASS	END=235894509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	235894510	.	T	.	.	PASS	END=235894512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	235894513	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:71:60
chr1	235894514	.	C	.	.	PASS	END=235894525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	235894526	.	G	.	.	PASS	END=235894528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	235896752	.	A	.	.	PASS	END=235896757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:60
chr1	235896758	.	T	.	.	PASS	END=235896777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	235896778	.	T	.	.	PASS	END=235896785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	235896786	.	G	.	.	PASS	END=235896788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	235896789	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:39:60
chr1	235896790	.	T	.	.	PASS	END=235896796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr1	235896797	.	G	.	.	PASS	END=235896834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	235896835	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:70:60
chr1	235896836	.	C	.	.	PASS	END=235896859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:88:60
chr1	235896860	.	A	.	.	PASS	END=235896875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	235896876	.	T	.	.	PASS	END=235896959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	235896960	.	C	.	.	PASS	END=235897022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	235897023	.	G	.	.	PASS	END=235897042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	235897079	.	A	.	.	PASS	END=235897080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	235897081	.	A	.	.	PASS	END=235897174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	235897175	.	A	.	.	PASS	END=235897231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	235897232	.	T	.	.	PASS	END=235897256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	235897257	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:99:60
chr1	235897732	.	T	.	.	PASS	END=235897759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:79:60
chr1	235897760	.	G	.	.	PASS	END=235897824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	235897825	.	G	.	.	PASS	END=235897861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	235897862	.	T	.	.	PASS	END=235897887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	235897888	.	C	.	.	PASS	END=235897906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	235897907	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:49:24:60
chr1	235897908	.	C	.	.	PASS	END=235897929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	235897930	.	T	.	.	PASS	END=235897947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:59
chr1	235897948	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:56:60
chr1	235897949	.	T	.	.	PASS	END=235897959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:59
chr1	235897960	.	C	.	.	PASS	END=235897986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:59
chr1	235897987	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:33:60
chr1	235897988	.	A	.	.	PASS	END=235898003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	235898004	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:30:60
chr1	235898005	.	T	.	.	PASS	END=235898024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr1	235901841	.	A	.	.	PASS	END=235901867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	235901868	.	T	.	.	PASS	END=235901883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	235901884	.	T	.	.	PASS	END=235901940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	235904671	.	T	.	.	PASS	END=235904679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	235904680	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:54:60
chr1	235904681	.	A	.	.	PASS	END=235904686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	235904687	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:55:60
chr1	235904688	.	G	.	.	PASS	END=235904693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	235904694	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:51:60
chr1	235904695	.	T	.	.	PASS	END=235904718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	235904719	.	T	.	.	PASS	END=235904732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	235904733	.	G	.	.	PASS	END=235904823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	235904824	.	C	.	.	PASS	END=235904876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	235904877	.	A	.	.	PASS	END=235904883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:90:60
chr1	235904884	.	A	.	.	PASS	END=235904909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	235904910	.	C	.	.	PASS	END=235904939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	235904940	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:66:60
chr1	235904941	.	A	.	.	PASS	END=235904965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	235904966	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:45:60
chr1	235904967	.	T	.	.	PASS	END=235904979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	235907228	.	C	.	.	PASS	END=235907254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	235907255	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:44:60
chr1	235907256	.	T	.	.	PASS	END=235907277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	235907278	.	C	.	.	PASS	END=235907339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	235907340	.	A	.	.	PASS	END=235907436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr1	235907437	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:57:60
chr1	235907438	.	A	.	.	PASS	END=235907471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	235907472	.	A	.	.	PASS	END=235907505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	235907506	.	T	.	.	PASS	END=235907507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	235907508	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:41:27:60
chr1	235909585	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	235909586	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	235909587	.	T	.	.	LowGQX	END=235909597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	235909598	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	235909599	.	A	.	.	LowGQX	END=235909604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	235909605	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	235909606	.	A	.	.	LowGQX	END=235909615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	235909616	.	A	.	.	LowGQX	END=235909618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	235909619	.	T	.	.	LowGQX	END=235909631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	235909632	.	T	.	.	LowGQX	END=235909633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	235909634	.	A	.	.	LowGQX	END=235909636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	235909637	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	235909638	.	T	.	.	LowGQX	END=235909639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	235909640	.	A	.	.	LowGQX	END=235909648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	235909649	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	235909650	.	C	.	.	LowGQX	END=235909651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	235909652	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	235909653	.	T	.	.	LowGQX	END=235909658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	235909659	.	G	.	.	PASS	END=235909674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	235909675	.	T	.	.	PASS	END=235909685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	235909686	.	T	.	.	PASS	END=235909710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	235909711	.	G	.	.	PASS	END=235909735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	235909736	.	C	.	.	PASS	END=235909753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:86:60
chr1	235909754	.	A	.	.	PASS	END=235909826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	235909827	.	C	.	.	PASS	END=235909871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	235909872	.	A	.	.	PASS	END=235909878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	235910470	.	C	.	.	LowGQX	END=235910631	GT	./.
chr1	235914459	.	A	.	.	PASS	END=235914496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	235914497	.	T	.	.	PASS	END=235914589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	235914590	.	T	.	.	PASS	END=235914694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr1	235914695	.	C	.	.	PASS	END=235914713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	235915254	.	G	.	.	PASS	END=235915264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	235915265	.	A	.	.	PASS	END=235915413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	235915414	.	T	.	.	PASS	END=235915462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	235915463	.	A	.	.	PASS	END=235915522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	235916293	.	T	.	.	PASS	END=235916295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	235916296	.	T	.	.	PASS	END=235916338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	235916339	.	C	.	.	PASS	END=235916341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	235916342	.	A	.	.	PASS	END=235916357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	235916358	.	A	.	.	PASS	END=235916368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	235916369	.	C	.	.	PASS	END=235916373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr1	235916374	.	G	.	.	PASS	END=235916390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	235916391	.	G	.	.	PASS	END=235916453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	235916454	.	A	.	.	PASS	END=235916521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	235916522	.	T	.	.	PASS	END=235916540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	235916541	.	C	.	.	PASS	END=235916600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:84:60
chr1	235916601	.	A	.	.	PASS	END=235916610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	235916611	.	C	.	.	PASS	END=235916625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	235918727	.	A	.	.	PASS	END=235918739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	235918740	.	A	.	.	PASS	END=235918752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	235918753	.	A	.	.	PASS	END=235918762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr1	235918763	.	G	.	.	PASS	END=235918766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	235918767	.	A	.	.	PASS	END=235918768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:60
chr1	235918769	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:27:60
chr1	235918770	.	A	.	.	PASS	END=235918771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	235918772	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:81:60
chr1	235918773	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:46:60
chr1	235918774	.	T	.	.	PASS	END=235918782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	235918783	.	A	.	.	PASS	END=235918789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	235918790	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:72:60
chr1	235918791	.	C	.	.	PASS	END=235918843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	235918844	.	C	.	.	PASS	END=235918869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	235918870	.	T	G	707.26	PASS	BaseQRankSum=-1.251;DP=73;Dels=0.00;FS=3.502;HRun=0;HaplotypeScore=5.6815;MQ=60;MQ0=0;MQRankSum=-0.192;QD=9.69;ReadPosRankSum=1.996;SB=-280.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:41,30:73:99:737,0,954:60:99:0.423
chr1	235918871	.	A	.	.	PASS	END=235918933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	235918934	.	T	.	.	PASS	END=235918984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	235918985	.	A	.	.	PASS	END=235918998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	235920530	.	T	.	.	PASS	END=235920558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr1	235920559	.	C	.	.	PASS	END=235920560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	235920561	.	T	.	.	PASS	END=235920577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	235920578	.	T	.	.	PASS	END=235920588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	235920589	.	C	.	.	PASS	END=235920604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	235920605	.	T	.	.	PASS	END=235920688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	235920689	.	G	.	.	PASS	END=235920734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	235920735	.	G	.	.	PASS	END=235920736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	235920737	.	T	.	.	PASS	END=235920753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	235920754	.	T	.	.	PASS	END=235920778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	235920779	.	G	.	.	PASS	END=235920796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	235920797	.	G	.	.	PASS	END=235920802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	235920803	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:39:60
chr1	235920804	.	A	.	.	PASS	END=235920809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	235922221	.	T	.	.	PASS	END=235922241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	235922242	.	T	.	.	PASS	END=235922265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	235922266	.	A	.	.	PASS	END=235922284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	235922285	.	C	.	.	PASS	END=235922317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	235922318	.	A	.	.	PASS	END=235922372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	235922373	.	G	.	.	PASS	END=235922445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	235922446	.	A	.	.	PASS	END=235922482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	235922483	.	G	.	.	PASS	END=235922515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr1	235922516	.	A	.	.	PASS	END=235922587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:311:99:60
chr1	235922588	.	C	.	.	PASS	END=235922778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:406:99:60
chr1	235922779	.	A	.	.	PASS	END=235922818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:308:99:60
chr1	235922819	.	A	.	.	PASS	END=235922848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr1	235922849	.	G	.	.	PASS	END=235922860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr1	235922861	.	C	.	.	PASS	END=235922881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	235922882	.	T	.	.	PASS	END=235922899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	235922900	.	C	.	.	PASS	END=235922915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	235922916	.	C	.	.	PASS	END=235922950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	235925969	.	A	.	.	PASS	END=235926072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	235926073	.	C	.	.	PASS	END=235926084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	235926085	.	C	.	.	PASS	END=235926111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	235926112	.	T	.	.	PASS	END=235926119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	235926120	.	T	.	.	PASS	END=235926129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:61
chr1	235926130	.	T	.	.	PASS	END=235926141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	235926142	.	A	.	.	PASS	END=235926143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:61
chr1	235926144	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:2:61
chr1	235926145	.	T	.	.	PASS	END=235926154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:33:61
chr1	235926155	.	G	.	.	PASS	END=235926167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr1	235926168	.	T	.	.	PASS	END=235926170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:36:60
chr1	235926171	.	T	.	.	PASS	END=235926192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr1	235929328	.	A	.	.	PASS	END=235929390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	235929391	.	A	.	.	PASS	END=235929430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	235929431	.	A	.	.	PASS	END=235929457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	235929458	.	A	.	.	PASS	END=235929511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	235929512	.	T	.	.	PASS	END=235929531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	235929532	.	T	.	.	PASS	END=235929551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	235929552	.	G	.	.	PASS	END=235929555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	235929556	.	T	.	.	PASS	END=235929560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	235929561	.	T	.	.	PASS	END=235929566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	235929567	.	T	.	.	PASS	END=235929570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	235929571	.	T	.	.	PASS	END=235929595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr1	235929596	.	C	A	266.48	SB	BaseQRankSum=1.592;DP=19;Dels=0.00;FS=0.000;HRun=8;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-1.184;QD=14.03;ReadPosRankSum=-0.367;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:10,9:19:99:296,0,289:60:99:0.474
chr1	235929597	.	T	.	.	PASS	END=235929617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	235929618	.	G	.	.	PASS	END=235929623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	235929624	.	T	.	.	PASS	END=235929628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	235933409	.	A	.	.	PASS	END=235933425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr1	235933426	.	T	.	.	PASS	END=235933474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	235933475	.	A	.	.	PASS	END=235933492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	235933493	.	A	.	.	PASS	END=235933581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	235933582	.	T	.	.	PASS	END=235933590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	235933591	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:62:60
chr1	235933592	.	A	.	.	PASS	END=235933613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	235933614	.	A	.	.	PASS	END=235933624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:77:60
chr1	235933625	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:48:60
chr1	235933626	.	A	.	.	PASS	END=235933631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	235933632	.	T	.	.	PASS	END=235933648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	235937091	.	T	.	.	PASS	END=235937140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	235937141	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:67:99:60
chr1	235937142	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:67:68:60
chr1	235937143	.	T	.	.	PASS	END=235937150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	235937151	.	A	.	.	PASS	END=235937217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	235937218	.	T	.	.	PASS	END=235937275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:84:60
chr1	235937276	.	A	.	.	PASS	END=235937294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	235937295	.	T	.	.	PASS	END=235937297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	235937298	.	A	.	.	PASS	END=235937320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	235937321	.	C	.	.	PASS	END=235937326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	235937327	.	T	.	.	PASS	END=235937329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	235937330	.	T	.	.	PASS	END=235937331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	235937332	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:3:60
chr1	235937333	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:39:60
chr1	235937334	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:2:60
chr1	235937335	.	T	.	.	PASS	END=235937338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	235937339	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	235937340	.	A	.	.	PASS	END=235937342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	235938162	.	A	.	.	PASS	END=235938165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:60
chr1	235938166	.	G	.	.	PASS	END=235938187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	235938188	.	A	.	.	PASS	END=235938203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	235938204	.	A	.	.	PASS	END=235938229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	235938230	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:57:60
chr1	235938231	.	A	.	.	PASS	END=235938300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	235938301	.	A	.	.	PASS	END=235938354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	235938355	.	T	.	.	PASS	END=235938379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:89:60
chr1	235938380	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:71:60
chr1	235938381	.	A	.	.	PASS	END=235938420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:83:60
chr1	235938421	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:60:60
chr1	235938422	.	A	.	.	PASS	END=235938437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	235940312	.	T	.	.	LowGQX	END=235940315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	235940316	.	A	.	.	PASS	END=235940328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	235940329	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:36:60
chr1	235940330	.	T	.	.	PASS	END=235940334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	235940335	.	A	.	.	PASS	END=235940336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	235940337	.	A	.	.	PASS	END=235940353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	235940354	.	G	.	.	PASS	END=235940364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	235940365	.	T	.	.	PASS	END=235940382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	235940383	.	A	.	.	PASS	END=235940400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	235940401	.	T	.	.	PASS	END=235940419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	235940420	.	A	.	.	PASS	END=235940469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:86:60
chr1	235940470	.	A	.	.	PASS	END=235940564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	235940565	.	T	.	.	PASS	END=235940567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	235940568	.	T	.	.	PASS	END=235940573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	235940574	.	G	.	.	PASS	END=235940607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	235940608	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:33:60
chr1	235940609	.	C	.	.	PASS	END=235940653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	235940654	.	T	.	.	PASS	END=235940659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	235944114	.	A	.	.	PASS	END=235944137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	235944138	.	A	.	.	PASS	END=235944165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	235944166	.	A	.	.	PASS	END=235944203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	235944204	.	A	.	.	PASS	END=235944265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	235944266	.	C	.	.	PASS	END=235944321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	235944322	.	A	.	.	PASS	END=235944362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	235944363	.	G	.	.	PASS	END=235944406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	235945176	.	T	.	.	PASS	END=235945184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	235945185	.	C	.	.	PASS	END=235945188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	235945189	.	C	.	.	PASS	END=235945190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr1	235945191	.	G	.	.	PASS	END=235945202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	235945203	.	G	.	.	PASS	END=235945205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	235945206	.	G	.	.	PASS	END=235945210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	235945211	.	A	.	.	PASS	END=235945278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	235945279	.	C	.	.	PASS	END=235945327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	235945328	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:76:60
chr1	235945329	.	T	.	.	PASS	END=235945356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	235945357	.	A	.	.	PASS	END=235945361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	235945362	.	T	.	.	PASS	END=235945386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	235945387	.	C	.	.	PASS	END=235945399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	235945400	.	C	.	.	PASS	END=235945408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	235945409	.	G	.	.	PASS	END=235945414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	235945415	.	G	.	.	PASS	END=235945419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	235945420	.	G	.	.	PASS	END=235945423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	235945424	.	T	.	.	PASS	END=235945426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	235945427	.	G	.	.	PASS	END=235945430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	235945431	.	G	.	.	PASS	END=235945434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:33:60
chr1	235945435	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:54:60
chr1	235945436	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:36:60
chr1	235945437	.	T	.	.	PASS	END=235945438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	235950449	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:51:60
chr1	235950450	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:21:60
chr1	235950451	.	A	.	.	PASS	END=235950480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	235950481	.	T	.	.	PASS	END=235950490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	235950491	.	G	.	.	PASS	END=235950493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	235950494	.	T	.	.	PASS	END=235950520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	235950521	.	G	.	.	PASS	END=235950549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	235950550	.	T	.	.	PASS	END=235950572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	235950573	.	G	.	.	PASS	END=235950644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	235950645	.	T	.	.	PASS	END=235950671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	235950672	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:89:63:60
chr1	235950673	.	A	.	.	PASS	END=235950708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	235950709	.	T	.	.	PASS	END=235950724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	235951950	.	A	.	.	PASS	END=235951960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	235951961	.	A	.	.	PASS	END=235951971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr1	235951972	.	A	.	.	PASS	END=235951977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	235951978	.	G	.	.	PASS	END=235951987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr1	235951988	.	G	.	.	PASS	END=235952010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr1	235952011	.	G	.	.	PASS	END=235952031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	235952032	.	C	.	.	PASS	END=235952146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	235952147	.	T	.	.	PASS	END=235952167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	235952168	.	T	.	.	PASS	END=235952186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	235952187	.	T	.	.	PASS	END=235952192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	235952193	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:45:60
chr1	235952194	.	T	.	.	PASS	END=235952196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	235954923	.	A	.	.	PASS	END=235954977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	235954978	.	C	.	.	PASS	END=235954990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	235954991	.	C	.	.	PASS	END=235955074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	235955075	.	A	.	.	PASS	END=235955087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	235955088	.	T	.	.	PASS	END=235955108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr1	235955109	.	C	.	.	PASS	END=235955196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:60
chr1	235955197	.	A	.	.	PASS	END=235955267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:292:99:60
chr1	235955268	.	A	.	.	PASS	END=235955313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr1	235955314	.	A	.	.	PASS	END=235955347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	235955348	.	A	.	.	PASS	END=235955363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	235955364	.	T	.	.	PASS	END=235955380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	235955381	.	A	.	.	PASS	END=235955388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:78:60
chr1	235955389	.	T	.	.	PASS	END=235955425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	235955426	.	C	.	.	PASS	END=235955463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr1	235955464	.	G	.	.	PASS	END=235955466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	235955467	.	A	.	.	PASS	END=235955476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr1	235956752	.	G	.	.	PASS	END=235956768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	235956769	.	T	.	.	PASS	END=235956870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	235956871	.	T	.	.	PASS	END=235956903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	235956904	.	T	.	.	PASS	END=235956919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	235956920	.	A	.	.	PASS	END=235956943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	235956944	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:51:60
chr1	235956945	.	T	.	.	PASS	END=235956954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	235956955	.	T	.	.	PASS	END=235956960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	235956961	.	G	.	.	PASS	END=235956963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	235963569	.	T	.	.	PASS	END=235963631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	235963632	.	A	.	.	PASS	END=235963644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	235963645	.	T	.	.	PASS	END=235963733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	235963734	.	C	.	.	PASS	END=235963737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	235964120	.	G	.	.	PASS	END=235964220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	235964221	.	A	.	.	PASS	END=235964332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	235964333	.	T	.	.	PASS	END=235964371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	235964372	.	T	.	.	PASS	END=235964403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	235964404	.	A	.	.	PASS	END=235964431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	235964432	.	C	.	.	PASS	END=235964446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	235964447	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:57:60
chr1	235964448	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:96:60
chr1	235966157	.	T	.	.	PASS	END=235966222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:84:60
chr1	235966223	.	C	.	.	PASS	END=235966339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	235966340	.	A	.	.	PASS	END=235966371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	235966372	.	T	.	.	PASS	END=235966379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	235966380	.	A	.	.	PASS	END=235966415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr1	235967753	.	C	.	.	PASS	END=235967760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	235967761	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:60
chr1	235967762	.	T	.	.	PASS	END=235967780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr1	235967781	.	C	.	.	PASS	END=235967795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	235967796	.	A	.	.	PASS	END=235967820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	235967821	.	C	.	.	PASS	END=235967949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	235967950	.	T	.	.	PASS	END=235968016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	235968992	.	A	.	.	PASS	END=235969016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	235969017	.	G	.	.	PASS	END=235969034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	235969035	.	G	.	.	PASS	END=235969079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	235969080	.	G	.	.	PASS	END=235969177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr1	235969178	.	C	.	.	PASS	END=235969245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	235969246	.	T	.	.	PASS	END=235969282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr1	235969283	.	T	.	.	PASS	END=235969441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:291:99:60
chr1	235969442	.	T	.	.	PASS	END=235969621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:272:99:60
chr1	235969622	.	A	.	.	PASS	END=235969733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:354:99:60
chr1	235969734	.	A	.	.	PASS	END=235969884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:424:99:60
chr1	235969885	.	A	.	.	PASS	END=235969947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:305:99:60
chr1	235969948	.	G	.	.	PASS	END=235969992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr1	235969993	.	G	.	.	PASS	END=235970046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr1	235970047	.	A	.	.	PASS	END=235970072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	235970073	.	C	.	.	PASS	END=235970101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	235970102	.	T	.	.	PASS	END=235970123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	235971704	.	T	.	.	PASS	END=235971714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:58
chr1	235971715	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:18:58
chr1	235971716	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:58
chr1	235971717	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:54:58
chr1	235971718	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:24:58
chr1	235971719	.	A	C	16.72	LowGQX;LowQD;SB	BaseQRankSum=0.118;DP=18;Dels=0.00;FS=0.000;HRun=5;HaplotypeScore=7.6780;MQ=58;MQ0=0;MQRankSum=0.948;QD=0.93;ReadPosRankSum=-0.237;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:15,3:18:46.62:47,0,160:58:17:0.167
chr1	235971720	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:59
chr1	235971721	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:45:59
chr1	235971722	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:59
chr1	235971723	.	C	.	.	PASS	END=235971724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:59
chr1	235971725	.	G	C	8.87	LowGQX;LowQD;SB	BaseQRankSum=-1.141;DP=19;Dels=0.00;FS=0.000;HRun=5;HaplotypeScore=13.3595;MQ=59;MQ0=0;MQRankSum=-1.310;QD=0.47;ReadPosRankSum=0.380;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:12,7:19:38.26:38,0,194:59:9:0.368
chr1	235971726	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:30:59
chr1	235971727	.	C	.	.	PASS	END=235971730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:59
chr1	235971731	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:0:60
chr1	235971732	.	C	.	.	PASS	END=235971733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	235971734	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:60
chr1	235971735	.	C	.	.	PASS	END=235971736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	235971737	.	A	.	15.07	LowGQX	DP=17;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:13:17:0.13:60:0
chr1	235971738	.	C	.	.	PASS	END=235971740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	235971741	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:4:60
chr1	235971742	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:69:60
chr1	235971743	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:25:60
chr1	235971744	.	C	.	.	PASS	END=235971745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr1	235971746	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:81:60
chr1	235971747	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:36:60
chr1	235971748	.	T	.	.	PASS	END=235971757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	235971758	.	G	.	.	PASS	END=235971767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	235971768	.	G	.	.	PASS	END=235971800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	235971801	.	C	.	.	PASS	END=235971802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	235971803	.	T	.	.	PASS	END=235971827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	235971828	.	G	.	.	PASS	END=235971845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	235971846	.	G	.	.	PASS	END=235971870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	235971871	.	A	.	.	PASS	END=235971989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr1	235971990	.	G	.	.	PASS	END=235972120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:263:99:60
chr1	235972121	.	C	.	.	PASS	END=235972147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:273:99:60
chr1	235972148	.	T	.	.	PASS	END=235972184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr1	235972185	.	C	.	.	PASS	END=235972389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	235972390	.	A	.	.	PASS	END=235972453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	235972454	.	T	.	.	PASS	END=235972481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	235972482	.	G	.	.	PASS	END=235972564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr1	235972565	.	C	.	.	PASS	END=235972621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr1	235972622	.	T	.	.	PASS	END=235972695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr1	235972696	.	A	.	.	PASS	END=235972742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:60
chr1	235972743	.	C	.	.	PASS	END=235972876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:328:99:60
chr1	235972877	.	C	.	.	PASS	END=235972934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:60
chr1	235972935	.	G	.	.	PASS	END=235973050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	235973051	.	A	.	.	PASS	END=235973118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	235973119	.	A	.	.	PASS	END=235973191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr1	235973192	.	C	.	.	PASS	END=235973263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr1	235973264	.	A	.	.	PASS	END=235973324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	235973325	.	A	.	.	PASS	END=235973409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:252:99:60
chr1	235973410	.	G	.	.	PASS	END=235973478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	235973479	.	C	.	.	PASS	END=235973565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	235973566	.	C	.	.	PASS	END=235973611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	235973612	.	T	.	.	PASS	END=235973639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	235973640	.	T	.	.	PASS	END=235973660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	235973661	.	A	.	.	PASS	END=235973704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	235973705	.	T	.	.	PASS	END=235973729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	235973730	.	A	.	.	PASS	END=235973735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	235973736	.	C	.	.	PASS	END=235973738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	235973739	.	T	.	.	PASS	END=235973767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	235973768	.	G	.	.	PASS	END=235973770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	235973771	.	C	.	.	PASS	END=235973796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	235973797	.	G	.	.	PASS	END=235973810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	235973811	.	C	.	.	PASS	END=235973817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	235973818	.	G	.	.	PASS	END=235973826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	235973827	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	235973828	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	235973829	.	T	.	.	LowGQX	END=235973837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	235973838	.	A	.	.	LowGQX	END=235973839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	235973840	.	G	.	.	LowGQX	END=235973852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	235973853	.	A	.	.	LowGQX	END=235973860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	235973861	.	G	.	.	LowGQX	END=235973864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	235973865	.	A	.	.	LowGQX	END=235973871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	235973872	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	235973873	.	A	.	.	LowGQX	END=235973875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	235973876	.	T	.	.	LowGQX	END=235973879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	235973880	.	A	.	.	LowGQX	END=235973885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	235976220	.	T	.	.	PASS	END=235976273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	235976274	.	T	.	.	PASS	END=235976308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	235976309	.	A	.	.	PASS	END=235976317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	235976318	.	A	.	.	PASS	END=235976348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:89:60
chr1	235976349	.	T	.	.	PASS	END=235976360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr1	235976361	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:60
chr1	235976362	.	C	.	.	PASS	END=235976407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	235976408	.	A	.	.	PASS	END=235976412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	235993455	.	A	.	.	PASS	END=235993497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	235993498	.	A	.	.	PASS	END=235993596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	235993597	.	T	.	.	PASS	END=235993632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:84:60
chr1	235993633	.	C	.	.	PASS	END=235993646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	235993647	.	A	.	.	PASS	END=235993649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	235993650	.	A	.	.	PASS	END=235993667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	235993668	.	T	.	.	PASS	END=235993677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	235993678	.	T	.	.	PASS	END=235993693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	235993694	.	C	.	.	PASS	END=235993704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr1	235993705	.	T	.	.	PASS	END=235993711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	235993712	.	G	.	.	LowGQX	END=235993713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	235993714	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	235993715	.	C	.	.	LowGQX	END=235993718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	235993719	.	A	.	.	LowGQX	END=235993721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	235993722	.	G	.	.	LowGQX	END=235993732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	235993733	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	235993734	.	A	.	.	LowGQX	END=235993736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	235993737	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	235993738	.	A	.	.	LowGQX	END=235993740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	235993741	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	235993742	.	C	.	.	LowGQX	END=235993743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	235993744	.	A	.	.	PASS	END=235993745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	235993746	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	235993747	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	235993748	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	235993749	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	235993750	.	A	.	.	LowGQX	END=235993754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	235993755	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	235993756	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	235993757	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	235993758	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	235993759	.	G	.	.	PASS	END=235993768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	236141165	.	C	.	.	PASS	END=236141216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	236141217	.	A	.	.	PASS	END=236141248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	236141249	.	T	.	.	PASS	END=236141265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	236141266	.	G	.	.	PASS	END=236141281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	236141282	.	T	.	.	PASS	END=236141290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	236142293	.	A	.	.	PASS	END=236142302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	236142303	.	C	.	.	PASS	END=236142304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	236142305	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:60:60
chr1	236142306	.	T	.	.	PASS	END=236142310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	236142311	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:58:60
chr1	236142312	.	A	.	.	PASS	END=236142320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	236142321	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:70:60
chr1	236142322	.	T	.	.	PASS	END=236142378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:80:60
chr1	236142379	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:73:60
chr1	236142380	.	T	.	.	PASS	END=236142409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	236143120	.	A	.	.	PASS	END=236143225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	236143226	.	G	.	.	PASS	END=236143247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	236143794	.	A	.	.	PASS	END=236143922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	236143923	.	A	.	.	PASS	END=236143937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	236143938	.	T	.	.	PASS	END=236143955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	236144909	.	A	.	.	PASS	END=236144940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	236144941	.	G	.	.	PASS	END=236145072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr1	236145073	.	C	.	.	PASS	END=236145084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr1	236148677	.	A	.	.	PASS	END=236148682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	236148683	.	T	.	.	PASS	END=236148724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	236148725	.	C	.	.	PASS	END=236148784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	236148785	.	C	.	.	PASS	END=236148807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	236154173	.	A	.	.	PASS	END=236154203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	236154204	.	C	.	.	PASS	END=236154230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr1	236154231	.	T	.	.	PASS	END=236154342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr1	236154343	.	G	.	.	PASS	END=236154358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	236154359	.	C	.	.	PASS	END=236154360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr1	236156943	.	A	.	.	PASS	END=236156975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	236156976	.	G	.	.	PASS	END=236157028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	236157029	.	C	.	.	PASS	END=236157116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	236157117	.	C	.	.	PASS	END=236157174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	236175219	.	A	.	.	PASS	END=236175318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	236175319	.	C	.	.	PASS	END=236175326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	236175327	.	C	A	1045.92	PASS	BaseQRankSum=1.271;DP=81;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.9988;MQ=60;MQ0=0;MQRankSum=-0.260;QD=12.91;ReadPosRankSum=-1.262;SB=-554.92	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:39,42:81:99:1076,0,901:60:99:0.519
chr1	236175328	.	T	.	.	PASS	END=236175338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	236175339	.	T	C	2208.17	PASS	DP=74;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.8932;MQ=60;MQ0=0;QD=29.84;SB=-1022.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,73:74:99:2241,172,0:60:99:1.000
chr1	236175340	.	A	.	.	PASS	END=236175345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	236176709	.	A	.	.	PASS	END=236176746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:81:60
chr1	236176747	.	A	.	.	PASS	END=236176762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	236176763	.	G	.	.	PASS	END=236176843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	236176844	.	G	.	.	PASS	END=236176862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	236180446	.	A	.	.	PASS	END=236180497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	236180498	.	C	.	.	PASS	END=236180543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	236180544	.	C	.	.	PASS	END=236180552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	236180553	.	G	.	.	PASS	END=236180575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	236187368	.	A	.	.	PASS	END=236187416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	236187417	.	G	.	.	PASS	END=236187438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	236187439	.	G	.	.	PASS	END=236187485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	236187486	.	G	.	.	PASS	END=236187515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	236189194	.	A	.	.	PASS	END=236189218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	236189219	.	C	.	.	PASS	END=236189290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	236189291	.	G	.	.	PASS	END=236189361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	236189362	.	A	.	.	PASS	END=236189419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	236189420	.	C	.	.	PASS	END=236189443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	236192848	.	A	.	.	PASS	END=236192865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	236192866	.	G	.	.	PASS	END=236192880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	236192881	.	G	.	.	PASS	END=236192955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	236192956	.	C	.	.	PASS	END=236193024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:60
chr1	236193025	.	C	.	.	PASS	END=236193052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	236195699	.	A	.	.	PASS	END=236195804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	236195805	.	T	.	.	PASS	END=236195888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	236195889	.	G	.	.	PASS	END=236195954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	236201402	.	A	.	.	PASS	END=236201474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	236201475	.	T	.	.	PASS	END=236201518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	236201519	.	A	.	.	PASS	END=236201555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	236205208	.	A	.	.	PASS	END=236205238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	236205239	.	T	.	.	PASS	END=236205298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	236205299	.	C	.	.	PASS	END=236205353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:84:60
chr1	236205354	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:68:34:60
chr1	236205355	.	G	.	.	PASS	END=236205366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	236205367	.	G	.	.	PASS	END=236205426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	236205427	.	C	.	.	PASS	END=236205517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	236205518	.	G	.	.	PASS	END=236205594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	236208755	.	A	.	.	PASS	END=236208772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	236208773	.	C	T	1748.88	PASS	BaseQRankSum=0.732;DP=142;Dels=0.00;FS=0.688;HRun=1;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=0.871;QD=12.32;ReadPosRankSum=-1.093;SB=-628.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:78,64:142:99:1779,0,2240:60:99:0.451
chr1	236208774	.	T	.	.	PASS	END=236208805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	236208806	.	C	.	.	PASS	END=236208847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	236208848	.	A	.	.	PASS	END=236208965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	236208966	.	A	.	.	PASS	END=236208985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	236211988	.	A	.	.	PASS	END=236212070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	236212071	.	C	.	.	PASS	END=236212107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	236212108	.	T	.	.	PASS	END=236212131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	236212132	.	G	.	.	PASS	END=236212198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	236212199	.	G	.	.	PASS	END=236212240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	236212241	.	A	.	.	PASS	END=236212297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	236227849	.	T	.	.	LowGQX	END=236227933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236227934	.	A	.	.	LowGQX	.	GT	./.
chr1	236227935	.	G	.	.	LowGQX	END=236227951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	236227952	.	A	.	.	LowGQX	.	GT	./.
chr1	236227953	.	C	.	.	LowGQX	END=236227959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236227960	.	T	.	.	LowGQX	END=236227961	GT	./.
chr1	236227962	.	C	.	.	LowGQX	END=236227966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236227967	.	A	.	.	LowGQX	.	GT	./.
chr1	236227968	.	G	.	.	LowGQX	END=236227977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	236227978	.	G	.	.	LowGQX	END=236227981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	236227982	.	G	.	.	LowGQX	END=236227984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	236227985	.	A	.	.	LowGQX	END=236227986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	236227987	.	G	.	.	LowGQX	END=236227997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	236227998	.	A	.	33	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:60:3
chr1	236227999	.	C	.	.	LowGQX	END=236228000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	236228001	.	C	.	.	LowGQX	END=236228006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	236228007	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	236228008	.	G	.	.	PASS	END=236228013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	236228014	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr1	236228015	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	236228016	.	A	.	25.54	LowGQX	DP=12;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:9:12:1.33:60:1
chr1	236228017	.	C	.	.	PASS	END=236228046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	236228047	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:0:60
chr1	236228048	.	G	.	.	PASS	END=236228053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	236228054	.	C	.	.	PASS	END=236228067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	236228068	.	G	.	.	PASS	END=236228072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	236228073	.	G	.	.	PASS	END=236228087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	236228088	.	G	.	.	PASS	END=236228092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	236228093	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:63:60
chr1	236228094	.	C	.	.	PASS	END=236228104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	236228105	.	G	.	.	PASS	END=236228107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr1	236228108	.	C	.	.	PASS	END=236228112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr1	236228113	.	G	.	.	PASS	END=236228116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr1	236228117	.	C	.	.	PASS	END=236228118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	236228119	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:63:60
chr1	236228120	.	G	.	.	PASS	END=236228127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr1	236228128	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr1	236228129	.	C	.	.	PASS	END=236228147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	236228148	.	C	.	.	PASS	END=236228151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:96:60
chr1	236228152	.	C	.	.	PASS	END=236228194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	236228195	.	G	.	.	PASS	END=236228301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	236228302	.	C	.	.	PASS	END=236228349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	236228350	.	A	.	.	PASS	END=236228391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	236228392	.	C	.	.	PASS	END=236228423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	236228424	.	A	.	.	PASS	END=236228439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	236228440	.	G	.	.	PASS	END=236228454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	236228455	.	T	.	.	PASS	END=236228457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	236228458	.	C	.	.	PASS	END=236228465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	236228466	.	T	.	.	PASS	END=236228473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	236228474	.	C	.	.	PASS	END=236228477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	236228478	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:45:60
chr1	236228479	.	C	.	.	PASS	END=236228485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	236228486	.	T	.	.	PASS	END=236228504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	236305837	.	T	.	.	LowGQX	END=236306060	GT	./.
chr1	236306061	.	G	.	.	LowGQX	END=236306284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236306285	.	T	.	.	LowGQX	END=236306338	GT	./.
chr1	236331980	.	C	.	.	LowGQX	.	GT	./.
chr1	236331981	.	C	.	.	LowGQX	END=236331987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	236331988	.	G	.	.	LowGQX	END=236331989	GT	./.
chr1	236331990	.	T	.	.	LowGQX	END=236332001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	236332002	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	236332003	.	C	.	.	LowGQX	END=236332004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	236332005	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	236332006	.	G	.	.	LowGQX	END=236332019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	236332020	.	C	.	.	LowGQX	.	GT	./.
chr1	236332021	.	A	.	.	LowGQX	END=236332024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	236332025	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	236332026	.	A	.	.	LowGQX	END=236332027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	236332028	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	236332029	.	A	.	.	LowGQX	END=236332031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	236332032	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	236332033	.	T	.	.	LowGQX	END=236332036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	236332037	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	236332038	.	A	.	.	LowGQX	END=236332042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	236332043	.	T	.	.	LowGQX	.	GT	./.
chr1	236332044	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	236332045	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	236332046	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	236332047	.	C	.	.	LowGQX	END=236332050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	236332051	.	T	.	34.82	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:4.83:60:5
chr1	236332052	.	A	.	.	LowGQX	END=236332053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	236332054	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	236332055	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	236332056	.	G	T	3.07	LowGQX;LowQD;SB	BaseQRankSum=0.804;DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.9466;MQ=60;MQ0=0;MQRankSum=0.804;QD=1.02;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:3:30.11:30,0,33:60:3:0.500
chr1	236332057	.	T	.	.	LowGQX	END=236332063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	236332064	.	T	.	.	LowGQX	.	GT	./.
chr1	236332065	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	236332066	.	C	.	.	LowGQX	.	GT	./.
chr1	236332067	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	236332068	.	G	.	.	LowGQX	.	GT	./.
chr1	236332069	.	G	.	.	LowGQX	END=236332074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236332075	.	T	.	.	LowGQX	.	GT	./.
chr1	236332076	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236332077	.	T	.	.	LowGQX	END=236332078	GT	./.
chr1	236332079	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236341712	.	A	.	.	LowGQX	END=236341938	GT	./.
chr1	236343177	.	A	.	.	LowGQX	END=236343245	GT	./.
chr1	236343246	.	G	.	.	LowGQX	END=236343466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236347076	.	A	.	.	LowGQX	END=236347208	GT	./.
chr1	236368424	.	A	.	.	LowGQX	END=236368552	GT	./.
chr1	236371348	.	A	.	.	LowGQX	END=236371460	GT	./.
chr1	236381744	.	T	.	.	LowGQX	END=236381896	GT	./.
chr1	236384130	.	A	.	.	LowGQX	END=236384267	GT	./.
chr1	236385162	.	T	.	.	LowGQX	END=236385317	GT	./.
chr1	236388355	.	T	.	.	LowGQX	END=236388454	GT	./.
chr1	236389567	.	A	.	.	LowGQX	END=236389817	GT	./.
chr1	236389944	.	T	.	.	LowGQX	END=236390043	GT	./.
chr1	236393432	.	T	.	.	LowGQX	END=236393587	GT	./.
chr1	236396084	.	A	.	.	LowGQX	END=236396183	GT	./.
chr1	236399063	.	T	.	.	LowGQX	END=236399162	GT	./.
chr1	236399576	.	A	.	.	LowGQX	END=236399700	GT	./.
chr1	236406709	.	T	.	.	LowGQX	END=236406737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236406738	.	G	.	.	LowGQX	.	GT	./.
chr1	236406739	.	T	.	.	LowGQX	END=236406760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236406761	.	T	.	.	LowGQX	END=236406808	GT	./.
chr1	236413123	.	T	.	.	LowGQX	END=236413276	GT	./.
chr1	236415321	.	G	.	.	LowGQX	END=236415348	GT	./.
chr1	236415349	.	C	.	.	LowGQX	END=236415382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236415383	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	236415384	.	A	.	.	LowGQX	END=236415420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236416714	.	T	.	.	LowGQX	END=236416813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236433173	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236433174	.	C	.	.	LowGQX	.	GT	./.
chr1	236433175	.	C	.	.	LowGQX	END=236433268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236433269	.	A	.	.	LowGQX	.	GT	./.
chr1	236433270	.	A	.	.	LowGQX	END=236433296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236444980	.	A	.	.	LowGQX	END=236445085	GT	./.
chr1	236557685	.	A	.	.	PASS	END=236557747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	236557748	.	G	.	.	PASS	END=236557770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	236557771	.	G	A	1792.92	PASS	BaseQRankSum=2.824;DP=161;Dels=0.00;FS=3.854;HRun=0;HaplotypeScore=12.4682;MQ=60;MQ0=0;MQRankSum=2.456;QD=11.14;ReadPosRankSum=-0.518;SB=-952.74	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:89,72:161:99:1823,0,2214:60:99:0.447
chr1	236557772	.	G	.	.	PASS	END=236557816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	236557817	.	T	.	.	PASS	END=236557856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	236558879	.	C	.	.	PASS	END=236558901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	236558902	.	G	.	.	PASS	END=236558953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	236558954	.	C	.	.	PASS	END=236558974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	236558975	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:40:60
chr1	236558976	.	G	.	.	PASS	END=236558983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	236558984	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:39:60
chr1	236558985	.	G	.	.	PASS	END=236558994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	236558995	.	C	.	.	PASS	END=236559011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	236572465	.	T	.	.	PASS	END=236572515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:60
chr1	236572516	.	A	.	.	PASS	END=236572542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	236572543	.	A	.	.	PASS	END=236572580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	236572581	.	G	.	.	PASS	END=236572625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	236577509	.	G	.	.	PASS	END=236577600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	236577601	.	T	.	.	PASS	END=236577609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	236577610	.	T	.	.	PASS	END=236577648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	236577649	.	T	.	.	PASS	END=236577650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr1	236590641	.	T	.	.	PASS	END=236590691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:78:60
chr1	236590692	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:62:60
chr1	236590693	.	T	.	.	PASS	END=236590775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:93:59
chr1	236590776	.	A	.	.	PASS	END=236590792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:59
chr1	236590793	.	A	.	.	PASS	END=236590798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	236590799	.	C	.	.	PASS	END=236590801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	236631480	.	T	.	.	PASS	END=236631564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	236631565	.	A	.	.	PASS	END=236631601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	236631602	.	T	.	.	PASS	END=236631618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:59
chr1	236631619	.	T	.	.	PASS	END=236631627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:59
chr1	236645516	.	C	.	.	PASS	END=236645529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	236645530	.	C	.	.	PASS	END=236645548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	236645549	.	A	.	.	PASS	END=236645562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	236645563	.	G	.	.	PASS	END=236645604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	236645605	.	T	.	.	PASS	END=236645608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	236645609	.	C	T	2467.01	PASS	BaseQRankSum=3.043;DP=222;Dels=0.00;FS=2.618;HRun=2;HaplotypeScore=17.1398;MQ=60;MQ0=0;MQRankSum=0.391;QD=11.11;ReadPosRankSum=1.198;SB=-902.65	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:129,91:222:99:2497,0,3393:60:99:0.414
chr1	236645610	.	C	.	.	PASS	END=236645652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	236645653	.	G	.	.	PASS	END=236645807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:264:99:60
chr1	236645808	.	C	.	.	PASS	END=236645828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr1	236645829	.	G	.	.	PASS	END=236645864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	236645865	.	G	.	.	PASS	END=236645923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	236645924	.	G	.	.	PASS	END=236645951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	236645952	.	C	.	.	PASS	END=236645984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	236645985	.	T	.	.	PASS	END=236646000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	236687395	.	G	.	.	LowGQX	END=236687416	GT	./.
chr1	236687417	.	G	.	.	LowGQX	END=236687457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	236687458	.	A	.	.	LowGQX	.	GT	./.
chr1	236687459	.	C	.	.	LowGQX	END=236687535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	236687536	.	C	A	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	236687537	.	G	.	.	LowGQX	END=236687566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	236687567	.	A	.	.	LowGQX	END=236687780	GT	./.
chr1	236687781	.	C	.	.	LowGQX	END=236687798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236689344	.	C	.	.	LowGQX	END=236689443	GT	./.
chr1	236700792	.	C	.	.	LowGQX	END=236700944	GT	./.
chr1	236702177	.	A	.	.	LowGQX	END=236702209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236702210	.	A	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	236702211	.	T	.	.	LowGQX	END=236702330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236702331	.	C	.	.	LowGQX	END=236702391	GT	./.
chr1	236703862	.	A	.	.	LowGQX	END=236703883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	236703884	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	236703885	.	A	.	.	LowGQX	END=236703886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	236703887	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	236703888	.	C	.	.	LowGQX	END=236703891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	236703892	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	236703893	.	C	.	.	LowGQX	END=236703906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	236703907	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	236703908	.	C	.	.	LowGQX	.	GT	./.
chr1	236703909	.	G	.	.	LowGQX	END=236703936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	236703937	.	T	.	.	LowGQX	.	GT	./.
chr1	236703938	.	T	.	.	LowGQX	END=236703984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	236703985	.	T	.	.	LowGQX	.	GT	./.
chr1	236704882	.	A	.	.	LowGQX	END=236705032	GT	./.
chr1	236706025	.	T	.	.	LowGQX	END=236706124	GT	./.
chr1	236706213	.	A	.	.	LowGQX	END=236706342	GT	./.
chr1	236706718	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706719	.	G	.	.	LowGQX	.	GT	./.
chr1	236706720	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706721	.	A	.	.	LowGQX	.	GT	./.
chr1	236706722	.	C	.	.	LowGQX	END=236706725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706726	.	G	.	.	LowGQX	END=236706819	GT	./.
chr1	236706820	.	T	.	.	LowGQX	END=236706821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706822	.	C	.	.	LowGQX	END=236706825	GT	./.
chr1	236706826	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706827	.	G	.	.	LowGQX	.	GT	./.
chr1	236706828	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706829	.	C	.	.	LowGQX	.	GT	./.
chr1	236706830	.	C	.	.	LowGQX	END=236706832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706833	.	T	.	.	LowGQX	.	GT	./.
chr1	236706834	.	T	.	.	LowGQX	END=236706836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706837	.	T	.	.	LowGQX	.	GT	./.
chr1	236706838	.	C	.	.	LowGQX	END=236706839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706840	.	T	.	.	LowGQX	END=236706843	GT	./.
chr1	236706844	.	T	.	.	LowGQX	END=236706845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706846	.	T	.	.	LowGQX	END=236706847	GT	./.
chr1	236706848	.	G	.	.	LowGQX	END=236706849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706850	.	T	.	.	LowGQX	.	GT	./.
chr1	236706851	.	T	.	.	LowGQX	END=236706852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706853	.	T	.	.	LowGQX	.	GT	./.
chr1	236706854	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706855	.	T	.	.	LowGQX	.	GT	./.
chr1	236706856	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706857	.	C	.	.	LowGQX	.	GT	./.
chr1	236706858	.	A	.	.	LowGQX	END=236706859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706860	.	A	.	.	LowGQX	.	GT	./.
chr1	236706861	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706862	.	G	.	.	LowGQX	.	GT	./.
chr1	236706863	.	C	.	.	LowGQX	END=236706864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706865	.	G	.	.	LowGQX	.	GT	./.
chr1	236706866	.	C	.	.	LowGQX	END=236706870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706871	.	C	.	.	LowGQX	.	GT	./.
chr1	236706872	.	G	.	.	LowGQX	END=236706876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706877	.	A	.	.	LowGQX	.	GT	./.
chr1	236706878	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706879	.	G	.	.	LowGQX	.	GT	./.
chr1	236706880	.	G	.	.	LowGQX	END=236706881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706882	.	T	.	.	LowGQX	END=236706883	GT	./.
chr1	236706884	.	A	.	.	LowGQX	END=236706886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706887	.	A	.	.	LowGQX	.	GT	./.
chr1	236706888	.	C	.	.	LowGQX	END=236706894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706895	.	G	.	.	LowGQX	.	GT	./.
chr1	236706896	.	G	.	.	LowGQX	END=236706901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706902	.	G	.	.	LowGQX	.	GT	./.
chr1	236706903	.	G	.	.	LowGQX	END=236706908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706909	.	C	.	.	LowGQX	.	GT	./.
chr1	236706910	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706911	.	G	.	.	LowGQX	.	GT	./.
chr1	236706912	.	T	.	.	LowGQX	END=236706914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706915	.	T	.	.	LowGQX	END=236706917	GT	./.
chr1	236706918	.	T	.	.	LowGQX	END=236706938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706939	.	A	.	.	LowGQX	.	GT	./.
chr1	236706940	.	T	.	.	LowGQX	END=236706949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236706950	.	T	.	.	LowGQX	.	GT	./.
chr1	236708048	.	A	.	.	LowGQX	END=236708095	GT	./.
chr1	236708096	.	C	.	.	LowGQX	END=236708130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236708131	.	A	.	.	LowGQX	END=236708132	GT	./.
chr1	236708133	.	G	.	.	LowGQX	END=236708143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236708144	.	C	.	.	LowGQX	.	GT	./.
chr1	236708145	.	T	.	.	LowGQX	END=236708149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236708150	.	G	.	.	LowGQX	.	GT	./.
chr1	236708151	.	A	.	.	LowGQX	END=236708163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236708164	.	A	.	.	LowGQX	END=236708165	GT	./.
chr1	236708166	.	A	.	.	LowGQX	END=236708180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236708181	.	C	.	.	LowGQX	.	GT	./.
chr1	236708182	.	C	.	.	LowGQX	END=236708185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236708186	.	T	.	.	LowGQX	.	GT	./.
chr1	236708187	.	T	.	.	LowGQX	END=236708192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236708193	.	T	.	.	LowGQX	.	GT	./.
chr1	236708194	.	T	.	.	LowGQX	END=236708202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236708203	.	G	.	.	LowGQX	.	GT	./.
chr1	236708204	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236708205	.	T	.	.	LowGQX	END=236708206	GT	./.
chr1	236708207	.	T	.	.	LowGQX	END=236708215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236708216	.	G	.	.	LowGQX	.	GT	./.
chr1	236708217	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236711310	.	A	.	.	LowGQX	END=236711463	GT	./.
chr1	236714197	.	A	.	.	LowGQX	END=236714233	GT	./.
chr1	236714234	.	C	.	.	LowGQX	END=236714235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236714236	.	G	.	.	LowGQX	.	GT	./.
chr1	236714237	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236714238	.	T	.	.	LowGQX	.	GT	./.
chr1	236714239	.	T	.	.	LowGQX	END=236714260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236714261	.	G	.	.	LowGQX	.	GT	./.
chr1	236714262	.	G	.	.	LowGQX	END=236714268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236714269	.	T	.	.	LowGQX	.	GT	./.
chr1	236714270	.	G	.	.	LowGQX	END=236714290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236714291	.	C	.	.	LowGQX	.	GT	./.
chr1	236714292	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236714293	.	A	.	.	LowGQX	.	GT	./.
chr1	236714294	.	A	.	.	LowGQX	END=236714296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236715297	.	A	.	.	LowGQX	END=236715409	GT	./.
chr1	236716879	.	A	.	.	LowGQX	END=236716978	GT	./.
chr1	236716979	.	G	.	.	LowGQX	END=236717041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236717866	.	C	.	.	LowGQX	END=236718054	GT	./.
chr1	236718594	.	A	.	.	LowGQX	END=236718606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236718607	.	A	.	.	LowGQX	END=236718766	GT	./.
chr1	236718849	.	A	.	.	LowGQX	.	GT	./.
chr1	236718850	.	C	.	.	LowGQX	END=236718898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236718899	.	G	.	.	LowGQX	END=236718937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	236718938	.	A	.	.	LowGQX	END=236718957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	236719103	.	A	.	.	LowGQX	END=236719119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	236719120	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	236719121	.	C	.	.	LowGQX	END=236719126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	236719127	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	236719128	.	C	.	.	LowGQX	END=236719134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	236719135	.	T	C	78.15	LowGQ;LowGQX;SB	DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=26.05;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:9.03:110,9,0:60:9:1.000
chr1	236719136	.	T	.	.	LowGQX	END=236719172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	236719173	.	T	.	.	LowGQX	.	GT	./.
chr1	236719174	.	G	.	.	LowGQX	END=236719190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236719191	.	T	.	.	LowGQX	.	GT	./.
chr1	236719192	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236719193	.	A	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	236719194	.	C	.	.	LowGQX	END=236719225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236719226	.	G	.	.	LowGQX	END=236719241	GT	./.
chr1	236719398	.	A	.	.	LowGQX	END=236719560	GT	./.
chr1	236720493	.	A	.	.	LowGQX	END=236720647	GT	./.
chr1	236721535	.	A	.	.	LowGQX	END=236721831	GT	./.
chr1	236722293	.	A	.	.	LowGQX	END=236722437	GT	./.
chr1	236723012	.	A	.	.	LowGQX	END=236723139	GT	./.
chr1	236724499	.	A	.	.	LowGQX	END=236724598	GT	./.
chr1	236727796	.	A	.	.	LowGQX	END=236727963	GT	./.
chr1	236729217	.	A	.	.	LowGQX	END=236729347	GT	./.
chr1	236729944	.	A	.	.	LowGQX	END=236730153	GT	./.
chr1	236730154	.	T	.	.	LowGQX	END=236730178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236732294	.	A	.	.	LowGQX	END=236732426	GT	./.
chr1	236734649	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236734650	.	C	.	.	LowGQX	.	GT	./.
chr1	236734651	.	C	.	.	LowGQX	END=236734698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236734699	.	G	.	.	LowGQX	.	GT	./.
chr1	236734700	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236734701	.	T	.	.	LowGQX	END=236734818	GT	./.
chr1	236734866	.	A	.	.	LowGQX	END=236735035	GT	./.
chr1	236735709	.	A	.	.	LowGQX	END=236735856	GT	./.
chr1	236736023	.	A	.	.	LowGQX	END=236736130	GT	./.
chr1	236737500	.	A	.	.	LowGQX	END=236737517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236737518	.	C	.	.	LowGQX	.	GT	./.
chr1	236737519	.	T	.	.	LowGQX	END=236737526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236737527	.	T	.	.	LowGQX	END=236737679	GT	./.
chr1	236737959	.	A	.	.	LowGQX	END=236738205	GT	./.
chr1	236739517	.	A	.	.	LowGQX	END=236739531	GT	./.
chr1	236739532	.	C	.	.	LowGQX	END=236739541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236739542	.	C	.	.	LowGQX	END=236739543	GT	./.
chr1	236739544	.	T	.	.	LowGQX	END=236739554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236739555	.	T	.	.	LowGQX	.	GT	./.
chr1	236739556	.	T	.	.	LowGQX	END=236739557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236739558	.	T	.	.	LowGQX	.	GT	./.
chr1	236739559	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236739560	.	C	.	.	LowGQX	.	GT	./.
chr1	236739561	.	T	.	.	LowGQX	END=236739569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236739570	.	T	.	.	LowGQX	END=236739571	GT	./.
chr1	236739572	.	G	.	.	LowGQX	END=236739679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236740078	.	A	.	.	LowGQX	END=236740251	GT	./.
chr1	236744510	.	T	.	.	LowGQX	END=236744716	GT	./.
chr1	236746034	.	A	.	.	LowGQX	END=236746087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236746088	.	A	.	.	LowGQX	END=236746174	GT	./.
chr1	236746311	.	A	.	.	LowGQX	END=236746498	GT	./.
chr1	236748323	.	A	.	.	LowGQX	END=236748366	GT	./.
chr1	236748367	.	C	.	.	LowGQX	END=236748411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236748412	.	T	.	.	LowGQX	.	GT	./.
chr1	236748413	.	A	.	.	LowGQX	END=236748417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236748418	.	T	.	.	LowGQX	.	GT	./.
chr1	236748419	.	G	.	.	LowGQX	END=236748432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236748433	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	236748434	.	A	.	.	LowGQX	END=236748458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236748459	.	T	.	.	LowGQX	.	GT	./.
chr1	236748460	.	T	.	.	LowGQX	END=236748475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236748476	.	T	.	.	LowGQX	.	GT	./.
chr1	236748477	.	T	.	.	LowGQX	END=236748504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236748505	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	236748506	.	A	.	.	LowGQX	END=236748516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236748517	.	C	.	.	LowGQX	END=236748518	GT	./.
chr1	236749118	.	A	.	.	LowGQX	END=236749297	GT	./.
chr1	236749539	.	A	.	.	LowGQX	END=236749754	GT	./.
chr1	236750697	.	C	.	.	LowGQX	END=236750796	GT	./.
chr1	236751246	.	A	.	.	LowGQX	END=236751345	GT	./.
chr1	236754145	.	A	.	.	LowGQX	END=236754256	GT	./.
chr1	236755291	.	A	.	.	LowGQX	END=236755412	GT	./.
chr1	236755771	.	T	.	.	LowGQX	END=236755834	GT	./.
chr1	236755835	.	A	.	.	LowGQX	END=236755836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236755837	.	C	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	236755838	.	C	.	.	LowGQX	END=236755933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236755934	.	C	.	.	LowGQX	.	GT	./.
chr1	236755935	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236757260	.	A	.	.	LowGQX	END=236757416	GT	./.
chr1	236758838	.	A	.	.	LowGQX	END=236758886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236758887	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	236758888	.	G	.	.	LowGQX	END=236758975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236759131	.	A	.	.	LowGQX	END=236759346	GT	./.
chr1	236760134	.	A	.	.	LowGQX	.	GT	./.
chr1	236760135	.	C	.	.	LowGQX	END=236760237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236760238	.	C	.	.	LowGQX	.	GT	./.
chr1	236760239	.	C	.	.	LowGQX	END=236760278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236761176	.	A	.	.	LowGQX	END=236761191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236761192	.	T	.	.	LowGQX	.	GT	./.
chr1	236761193	.	C	.	.	LowGQX	END=236761200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236761201	.	T	.	.	LowGQX	.	GT	./.
chr1	236761202	.	G	.	.	LowGQX	END=236761238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236761239	.	T	.	.	LowGQX	END=236761281	GT	./.
chr1	236762781	.	A	.	.	LowGQX	END=236762926	GT	./.
chr1	236766455	.	G	.	.	LowGQX	END=236766678	GT	./.
chr1	236767182	.	G	.	.	LowGQX	END=236767397	GT	./.
chr1	236849923	.	C	.	.	PASS	END=236849928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	236849929	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:33:60
chr1	236849930	.	C	.	.	PASS	END=236849932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:60
chr1	236849933	.	A	.	.	PASS	END=236849934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:33:60
chr1	236849935	.	C	.	.	PASS	END=236849948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	236849949	.	C	.	.	PASS	END=236849951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr1	236849952	.	C	T	478.11	PASS	BaseQRankSum=-0.246;DP=34;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.6815;MQ=60;MQ0=0;MQRankSum=-0.435;QD=14.06;ReadPosRankSum=0.737;SB=-241.93	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:10,24:34:99:508,0,217:60:99:0.706
chr1	236849953	.	A	.	.	PASS	END=236849964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:54:60
chr1	236849965	.	C	.	.	PASS	END=236849977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:60:60
chr1	236849978	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:40:29:60
chr1	236849979	.	C	.	.	PASS	END=236849983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:66:60
chr1	236849984	.	T	.	.	PASS	END=236849988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:57:60
chr1	236849989	.	C	.	.	PASS	END=236850015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:69:60
chr1	236850016	.	G	.	.	PASS	END=236850031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	236850032	.	T	.	.	PASS	END=236850048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr1	236850049	.	T	.	.	PASS	END=236850053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:51:60
chr1	236850054	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:29:60
chr1	236850055	.	C	.	.	PASS	END=236850064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	236850065	.	T	.	.	PASS	END=236850076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:54:60
chr1	236850077	.	C	.	.	PASS	END=236850085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	236850086	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:29:60
chr1	236850087	.	G	.	.	PASS	END=236850097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:60
chr1	236850098	.	A	.	.	PASS	END=236850100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr1	236850101	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:33:60
chr1	236850102	.	C	.	.	PASS	END=236850112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr1	236850113	.	C	.	.	PASS	END=236850121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	236850122	.	C	.	.	PASS	END=236850141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	236850142	.	G	.	.	LowGQX	END=236850143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	236850144	.	C	.	.	PASS	END=236850145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	236850146	.	C	.	.	LowGQX	END=236850150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	236881107	.	G	.	.	PASS	END=236881116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	236881117	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:35:60
chr1	236881118	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:27:60
chr1	236881119	.	G	.	.	PASS	END=236881127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	236881128	.	G	.	.	PASS	END=236881139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	236881140	.	G	.	.	PASS	END=236881156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	236881157	.	G	.	.	PASS	END=236881186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:93:60
chr1	236881187	.	A	.	.	PASS	END=236881267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:86:60
chr1	236881268	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:76:60
chr1	236881269	.	T	.	.	PASS	END=236881289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	236881290	.	C	.	.	PASS	END=236881307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	236881308	.	G	.	.	PASS	END=236881321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr1	236881322	.	A	.	.	PASS	END=236881323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	236882143	.	A	.	.	PASS	END=236882156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	236882157	.	G	.	.	PASS	END=236882179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	236882180	.	T	.	.	PASS	END=236882302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	236882303	.	T	C	1951.37	PASS	DP=73;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.8903;MQ=60;MQ0=0;QD=26.73;SB=-850.20	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,72:73:99:1984,147,0:60:99:1.000
chr1	236882304	.	G	.	.	PASS	END=236882307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	236882308	.	C	.	.	PASS	END=236882330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr1	236882331	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:72:60
chr1	236882332	.	G	.	.	PASS	END=236882333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	236882334	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:66:60
chr1	236882335	.	C	.	.	PASS	END=236882343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	236882344	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:51:60
chr1	236882345	.	A	.	.	PASS	END=236882351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr1	236882352	.	C	.	.	PASS	END=236882360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	236882361	.	G	.	.	PASS	END=236882364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr1	236883354	.	A	.	.	PASS	END=236883420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	236883421	.	C	T	1993.17	PASS	DP=65;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;QD=30.66;SB=-1163.52	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,65:65:99:2026,150,0:60:99:1.000
chr1	236883422	.	G	.	.	PASS	END=236883446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	236883447	.	G	.	.	PASS	END=236883460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	236883461	.	C	.	.	PASS	END=236883481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	236883482	.	T	.	.	PASS	END=236883511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	236883512	.	T	.	.	PASS	END=236883542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	236889182	.	T	.	.	PASS	END=236889204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	236889205	.	G	.	.	PASS	END=236889309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	236889310	.	T	.	.	PASS	END=236889337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:90:60
chr1	236889338	.	C	.	.	PASS	END=236889349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	236889350	.	T	.	.	PASS	END=236889371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	236890927	.	C	.	.	PASS	END=236890931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	236890932	.	T	.	.	PASS	END=236890938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	236890939	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:27:60
chr1	236890940	.	A	.	.	PASS	END=236890951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	236890952	.	T	.	.	PASS	END=236890961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	236890962	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:51:60
chr1	236890963	.	T	.	.	PASS	END=236890988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	236890989	.	G	.	.	PASS	END=236891010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	236891011	.	C	.	.	PASS	END=236891068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr1	236891069	.	G	.	.	PASS	END=236891070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	236891071	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr1	236891072	.	C	.	.	PASS	END=236891088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	236891089	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:63:60
chr1	236891090	.	A	.	.	PASS	END=236891099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	236891100	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:45:60
chr1	236891101	.	T	.	.	PASS	END=236891107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr1	236894482	.	T	.	.	PASS	END=236894511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	236894512	.	A	.	.	PASS	END=236894513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:74:60
chr1	236894514	.	T	.	.	PASS	END=236894530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	236894531	.	A	.	.	PASS	END=236894536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	236894537	.	A	.	.	PASS	END=236894597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	236894598	.	A	.	.	PASS	END=236894646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	236894647	.	G	A	804.87	PASS	BaseQRankSum=2.672;DP=55;Dels=0.00;FS=4.462;HRun=3;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=0.329;QD=14.63;ReadPosRankSum=3.144;SB=-187.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,29:55:99:835,0,593:60:99:0.527
chr1	236894648	.	A	.	.	PASS	END=236894665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	236897726	.	C	.	.	LowGQX	END=236897825	GT	./.
chr1	236898884	.	T	.	.	PASS	END=236898891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:93:60
chr1	236898892	.	G	.	.	PASS	END=236898896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	236898897	.	T	.	.	PASS	END=236898927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	236898928	.	C	.	.	PASS	END=236898957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	236898958	.	G	.	.	PASS	END=236899039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	236899040	.	C	.	.	PASS	END=236899041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	236899042	.	G	A	1339.60	PASS	BaseQRankSum=3.533;DP=147;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=15.1507;MQ=60;MQ0=0;MQRankSum=1.704;QD=9.11;ReadPosRankSum=0.030;SB=-736.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:84,62:147:99:1370,0,1912:60:99:0.425
chr1	236899043	.	G	.	.	PASS	END=236899058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	236899059	.	T	.	.	PASS	END=236899071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	236899858	.	G	.	.	LowGQX	END=236899862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236899863	.	A	.	.	LowGQX	.	GT	./.
chr1	236899864	.	C	.	.	LowGQX	END=236899870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236899871	.	T	.	.	LowGQX	.	GT	./.
chr1	236899872	.	T	.	.	LowGQX	END=236899877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236899878	.	A	.	.	LowGQX	.	GT	./.
chr1	236899879	.	C	.	.	LowGQX	END=236899880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236899881	.	C	.	.	LowGQX	.	GT	./.
chr1	236899882	.	T	.	.	LowGQX	END=236899887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236899888	.	C	.	.	LowGQX	END=236899968	GT	./.
chr1	236900371	.	G	.	.	PASS	END=236900406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	236900407	.	T	.	.	PASS	END=236900506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	236900507	.	C	.	.	PASS	END=236900548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	236900549	.	C	.	.	PASS	END=236900565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	236902551	.	G	.	.	PASS	END=236902553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	236902554	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:41:20:60
chr1	236902555	.	G	.	.	PASS	END=236902559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	236902560	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:57:60
chr1	236902561	.	T	.	.	PASS	END=236902563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	236902564	.	C	.	.	PASS	END=236902565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:60:60
chr1	236902566	.	G	.	.	PASS	END=236902567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr1	236902568	.	T	.	.	PASS	END=236902569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:72:60
chr1	236902570	.	T	.	.	PASS	END=236902571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:66:60
chr1	236902572	.	T	.	.	PASS	END=236902598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr1	236902599	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:69:60
chr1	236902600	.	A	.	.	PASS	END=236902601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:90:60
chr1	236902602	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:69:60
chr1	236902603	.	T	.	.	PASS	END=236902649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:97:60
chr1	236902650	.	C	.	.	PASS	END=236902676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	236902677	.	A	.	.	PASS	END=236902733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	236902734	.	G	.	.	PASS	END=236902801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	236902802	.	C	.	.	PASS	END=236902830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	236902831	.	C	.	.	PASS	END=236902862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	236902863	.	C	.	.	PASS	END=236902872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	236902873	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:69:60
chr1	236902874	.	C	.	.	PASS	END=236902883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	236906145	.	A	.	.	PASS	END=236906146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	236906147	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:0:60
chr1	236906148	.	G	.	.	PASS	END=236906160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	236906161	.	A	.	.	PASS	END=236906172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	236906173	.	C	.	.	PASS	END=236906189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	236906190	.	T	.	.	PASS	END=236906194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr1	236906195	.	G	.	.	PASS	END=236906227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	236906228	.	G	.	.	PASS	END=236906252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	236906253	.	T	.	.	PASS	END=236906274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	236906275	.	T	.	.	PASS	END=236906345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:96:60
chr1	236906346	.	A	.	.	PASS	END=236906379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	236906380	.	C	.	.	PASS	END=236906381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:66:60
chr1	236906382	.	A	.	.	PASS	END=236906394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	236907875	.	A	.	.	PASS	END=236907885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	236907886	.	C	.	.	PASS	END=236907908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	236907909	.	T	.	.	PASS	END=236908035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	236908036	.	G	.	.	PASS	END=236908048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	236908049	.	A	.	.	PASS	END=236908078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	236908079	.	A	.	.	PASS	END=236908098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	236908099	.	C	.	.	PASS	END=236908117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	236908118	.	T	.	.	PASS	END=236908127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	236910916	.	T	.	.	PASS	END=236910986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	236910987	.	C	.	.	PASS	END=236911060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:85:60
chr1	236911061	.	A	.	.	PASS	END=236911067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	236911068	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:39:60
chr1	236911069	.	C	.	.	PASS	END=236911080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr1	236911081	.	G	.	.	PASS	END=236911126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	236912373	.	G	.	.	PASS	END=236912408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	236912409	.	C	.	.	PASS	END=236912505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	236912506	.	A	.	.	PASS	END=236912520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	236912521	.	A	.	.	PASS	END=236912541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	236912542	.	T	.	.	PASS	END=236912556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	236912557	.	A	.	.	PASS	END=236912582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	236912583	.	T	.	.	PASS	END=236912591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	236912592	.	T	.	.	PASS	END=236912596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	236912597	.	A	G	465.67	PASS	BaseQRankSum=-0.893;DP=32;Dels=0.00;FS=7.076;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=-0.060;QD=14.55;ReadPosRankSum=-1.608;SB=-153.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:14,17:32:99:496,0,386:60:99:0.548
chr1	236912598	.	T	.	.	PASS	END=236912601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	236912602	.	A	.	.	PASS	END=236912607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	236912608	.	G	.	.	PASS	END=236912611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	236912612	.	T	.	.	PASS	END=236912613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	236912614	.	A	.	.	PASS	END=236912615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	236914709	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	236914710	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	236914711	.	A	.	.	PASS	END=236914735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	236914736	.	A	.	.	PASS	END=236914751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	236914752	.	C	.	.	PASS	END=236914762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	236914763	.	G	.	.	PASS	END=236914770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	236914771	.	G	.	.	PASS	END=236914790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	236914791	.	C	.	.	PASS	END=236914803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:94:60
chr1	236914804	.	C	.	.	PASS	END=236914888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	236914889	.	A	.	.	PASS	END=236914913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	236914914	.	A	.	.	PASS	END=236914933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	236914934	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:38:60
chr1	236914935	.	C	.	.	PASS	END=236914938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	236914939	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:70:60
chr1	236914940	.	C	.	.	PASS	END=236914943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	236914944	.	T	.	.	PASS	END=236914948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	236914949	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr1	236914950	.	A	.	.	PASS	END=236914957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	236914958	.	T	.	.	PASS	END=236914961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr1	236914962	.	T	.	.	PASS	END=236914967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr1	236914968	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:48:60
chr1	236914969	.	C	.	.	PASS	END=236914974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	236914975	.	T	.	.	PASS	END=236914980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	236914981	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:18:60
chr1	236914982	.	A	.	.	PASS	END=236914994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	236914995	.	G	.	.	PASS	END=236914996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr1	236914997	.	A	.	.	PASS	END=236915000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr1	236915001	.	G	.	.	PASS	END=236915003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	236917196	.	C	.	.	PASS	END=236917203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	236917204	.	C	.	.	PASS	END=236917214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr1	236917215	.	C	.	.	PASS	END=236917237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	236917238	.	C	.	.	PASS	END=236917254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	236917255	.	A	.	.	PASS	END=236917257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	236917258	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:48:60
chr1	236917259	.	G	.	.	PASS	END=236917279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	236917280	.	C	.	.	PASS	END=236917352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	236917353	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:52:60
chr1	236917354	.	T	.	.	PASS	END=236917395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	236917396	.	T	.	.	PASS	END=236917397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	236917398	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:51:60
chr1	236917399	.	C	.	.	PASS	END=236917406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	236917407	.	G	.	.	PASS	END=236917425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	236917426	.	A	.	.	PASS	END=236917432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	236918268	.	G	.	.	PASS	END=236918284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	236918285	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:54:60
chr1	236918286	.	T	.	.	PASS	END=236918305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	236918306	.	T	.	.	PASS	END=236918337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	236918338	.	T	.	.	PASS	END=236918383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	236918384	.	G	.	.	PASS	END=236918446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	236918447	.	C	.	.	PASS	END=236918474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	236918475	.	A	.	.	PASS	END=236918499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	236918500	.	T	.	.	PASS	END=236918523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:85:60
chr1	236918524	.	C	.	.	PASS	END=236918532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	236918533	.	C	.	.	PASS	END=236918542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	236918543	.	C	.	.	PASS	END=236918547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr1	236918548	.	C	.	.	PASS	END=236918549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	236920735	.	T	.	.	PASS	END=236920739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	236920740	.	A	.	.	PASS	END=236920750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	236920751	.	A	.	.	PASS	END=236920756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	236920757	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:69:60
chr1	236920758	.	A	.	.	PASS	END=236920770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	236920771	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:75:60
chr1	236920772	.	T	.	.	PASS	END=236920788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	236920789	.	A	.	.	PASS	END=236920834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	236920835	.	T	.	.	PASS	END=236920891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	236920892	.	A	.	.	PASS	END=236920938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:93:60
chr1	236920939	.	C	.	.	PASS	END=236920949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	236920950	.	T	.	.	PASS	END=236920977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	236920978	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:42:60
chr1	236920979	.	A	.	.	PASS	END=236920983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr1	236922973	.	T	.	.	PASS	END=236922987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	236922988	.	G	.	.	PASS	END=236923027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	236923028	.	A	.	.	PASS	END=236923128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	236923129	.	T	.	.	PASS	END=236923140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	236924264	.	T	.	.	PASS	END=236924269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	236924270	.	G	.	.	PASS	END=236924330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:97:60
chr1	236924331	.	C	.	.	PASS	END=236924355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	236924356	.	C	.	.	PASS	END=236924418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	236924419	.	C	.	.	PASS	END=236924446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	236924447	.	T	.	.	PASS	END=236924492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:94:60
chr1	236924493	.	C	.	.	PASS	END=236924505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr1	236924506	.	A	G	1486.83	PASS	DP=49;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=1.8938;MQ=60;MQ0=0;QD=30.34;SB=-150.60	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,49:49:99:1520,126,0:60:99:1.000
chr1	236924507	.	G	.	.	PASS	END=236924518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr1	236924519	.	A	.	.	PASS	END=236924524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:78:60
chr1	236925710	.	T	.	.	PASS	END=236925745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	236925746	.	T	.	.	PASS	END=236925811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	236925812	.	C	.	.	PASS	END=236925879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	236925880	.	T	.	.	PASS	END=236925905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	236925906	.	A	.	.	PASS	END=236925932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	236925933	.	T	.	.	PASS	END=236925938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	236925939	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:75:60
chr1	236925940	.	T	.	.	PASS	END=236925970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	236958620	.	A	.	.	LowGQX	END=236958639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236958640	.	C	.	.	LowGQX	.	GT	./.
chr1	236958641	.	C	.	.	LowGQX	END=236958717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	236958718	.	G	.	.	LowGQX	END=236958729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	236958730	.	C	.	.	LowGQX	END=236958742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	236958743	.	A	.	.	LowGQX	END=236958749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	236958750	.	A	.	.	LowGQX	END=236958751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	236958752	.	T	.	.	LowGQX	END=236958754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	236958755	.	C	.	.	LowGQX	END=236958760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	236958761	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:60
chr1	236958762	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:60
chr1	236958763	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	236958764	.	C	.	.	LowGQX	END=236958784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	236958785	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	236958786	.	G	.	.	LowGQX	END=236958796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	236958797	.	G	.	.	PASS	END=236958798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	236958799	.	C	.	.	LowGQX	END=236958800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	236958801	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	236958802	.	G	.	.	PASS	END=236958813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	236958814	.	G	.	.	PASS	END=236958841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	236958842	.	C	.	.	PASS	END=236958848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	236958849	.	C	.	.	PASS	END=236958857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	236958858	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:39:60
chr1	236958859	.	C	.	.	PASS	END=236958862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	236958863	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:51:60
chr1	236958864	.	G	.	.	PASS	END=236958866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:72:60
chr1	236958867	.	A	.	.	PASS	END=236958868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr1	236958869	.	C	.	.	PASS	END=236958884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	236958885	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:57:60
chr1	236958886	.	C	.	.	PASS	END=236958911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	236958912	.	T	.	.	PASS	END=236958929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	236958930	.	C	.	.	PASS	END=236958945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr1	236958946	.	C	.	.	PASS	END=236958980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr1	236958981	.	G	.	.	PASS	END=236959025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	236959026	.	T	.	.	PASS	END=236959090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:96:60
chr1	236966677	.	C	.	.	PASS	END=236966727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	236966728	.	A	.	.	PASS	END=236966741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	236966742	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:69:60
chr1	236966743	.	C	.	.	PASS	END=236966755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	236966756	.	G	.	.	PASS	END=236966773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	236966774	.	G	.	.	PASS	END=236966786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	236966787	.	G	.	.	PASS	END=236966800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	236966801	.	G	.	.	PASS	END=236966835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	236966836	.	A	.	.	PASS	END=236966927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	236966928	.	T	.	.	PASS	END=236966949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	236966950	.	A	.	.	PASS	END=236966966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	236966967	.	T	.	.	PASS	END=236966993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	236969393	.	G	.	.	PASS	END=236969415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	236969416	.	T	.	.	PASS	END=236969449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	236969450	.	T	.	.	PASS	END=236969499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	236969500	.	T	.	.	PASS	END=236969564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	236969565	.	T	.	.	PASS	END=236969584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	236971953	.	A	.	.	PASS	END=236971971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	236971972	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:45:60
chr1	236971973	.	G	.	.	PASS	END=236971996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:60
chr1	236971997	.	A	.	.	PASS	END=236972008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:93:60
chr1	236972009	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:66:60
chr1	236972010	.	C	.	.	PASS	END=236972025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:80:60
chr1	236972026	.	C	.	.	PASS	END=236972110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:97:60
chr1	236972111	.	C	.	.	PASS	END=236972124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	236973752	.	A	.	.	PASS	END=236973804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	236973805	.	A	.	.	PASS	END=236973946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	236974905	.	A	.	.	LowGQX	END=236975004	GT	./.
chr1	236975987	.	A	.	.	PASS	END=236976016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	236976017	.	G	.	.	PASS	END=236976051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	236976052	.	G	.	.	PASS	END=236976078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	236976079	.	G	.	.	PASS	END=236976127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	236976128	.	A	.	.	PASS	END=236976167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	236976168	.	A	.	.	PASS	END=236976186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	236976187	.	T	.	.	PASS	END=236976195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	236978844	.	T	.	.	PASS	END=236978963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	236978964	.	G	.	.	PASS	END=236978991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	236978992	.	T	.	.	PASS	END=236979014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	236979698	.	T	.	.	PASS	END=236979747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	236979748	.	G	.	.	PASS	END=236979821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	236979822	.	T	.	.	PASS	END=236979839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	236979840	.	T	.	.	PASS	END=236979846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	236979847	.	A	.	.	PASS	END=236979866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	236979867	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:63:60
chr1	236979868	.	T	.	.	PASS	END=236979877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	236979878	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:73:60
chr1	236979879	.	T	.	.	PASS	END=236979883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	236979884	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:60
chr1	236979885	.	G	.	.	PASS	END=236979894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	236987368	.	T	.	.	PASS	END=236987437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	236987438	.	T	.	.	PASS	END=236987502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	236987503	.	C	.	.	PASS	END=236987570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	236988587	.	G	.	.	PASS	END=236988668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	236988669	.	A	.	.	PASS	END=236988701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	236988702	.	C	.	.	PASS	END=236988709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	236988710	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:59:60
chr1	236988711	.	C	.	.	PASS	END=236988722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	236988723	.	C	.	.	PASS	END=236988746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	236988747	.	G	.	.	PASS	END=236988750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	236990078	.	A	.	.	PASS	END=236990137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	236990138	.	A	.	.	PASS	END=236990156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	236990157	.	T	.	.	PASS	END=236990221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	236990222	.	T	.	.	PASS	END=236990247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	236992438	.	A	.	.	PASS	END=236992474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	236992475	.	C	.	.	PASS	END=236992558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	236992559	.	T	.	.	PASS	END=236992581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	236992582	.	A	.	.	PASS	END=236992598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr1	236992599	.	G	.	.	PASS	END=236992617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	236992618	.	T	.	.	PASS	END=236992619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	236995215	.	T	.	.	PASS	END=236995259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr1	236995260	.	T	.	.	PASS	END=236995275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	236995276	.	C	.	.	PASS	END=236995307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	236995308	.	A	.	.	PASS	END=236995329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	236995330	.	T	.	.	PASS	END=236995413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	236995414	.	C	.	.	PASS	END=236995429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	236998796	.	T	.	.	PASS	END=236998798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr1	236998799	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:18:60
chr1	236998800	.	C	.	.	PASS	END=236998809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	236998810	.	T	.	.	PASS	END=236998811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:33:60
chr1	236998812	.	T	.	.	PASS	END=236998824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	236998825	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:45:60
chr1	236998826	.	C	.	.	PASS	END=236998846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	236998847	.	G	.	.	PASS	END=236998851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	236998852	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:54:60
chr1	236998853	.	T	.	.	PASS	END=236998898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	236998899	.	A	.	.	PASS	END=236998923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	236998924	.	A	.	.	PASS	END=236998996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	236998997	.	A	.	.	PASS	END=236999028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	236999029	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:60:60
chr1	236999030	.	A	.	.	PASS	END=236999038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	237001663	.	T	.	.	PASS	END=237001679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	237001680	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:21:60
chr1	237001681	.	C	.	.	PASS	END=237001705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr1	237001706	.	G	.	.	PASS	END=237001716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	237001717	.	C	.	.	PASS	END=237001736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	237001737	.	C	.	.	PASS	END=237001756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr1	237001757	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:55:60
chr1	237001758	.	T	.	.	PASS	END=237001795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	237001796	.	G	.	.	PASS	END=237001924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:90:60
chr1	237001925	.	C	.	.	PASS	END=237001950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	237013593	.	T	.	.	PASS	END=237013616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	237013617	.	A	.	.	PASS	END=237013636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	237013637	.	T	.	.	PASS	END=237013683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	237013684	.	C	.	.	PASS	END=237013687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	237013688	.	C	.	.	PASS	END=237013740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	237013741	.	C	.	.	PASS	END=237013834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	237013835	.	C	.	.	PASS	END=237013841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	237013842	.	T	.	.	PASS	END=237013874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	237015770	.	C	.	.	PASS	END=237015895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	237015896	.	C	.	.	PASS	END=237015939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	237015940	.	A	.	.	PASS	END=237015960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:84:60
chr1	237015961	.	C	.	.	PASS	END=237015980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr1	237015981	.	T	.	.	PASS	END=237015988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	237016197	.	C	.	.	PASS	END=237016200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	237016201	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:57:60
chr1	237016202	.	T	.	.	PASS	END=237016235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	237016236	.	T	.	.	PASS	END=237016260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	237016261	.	T	.	.	PASS	END=237016289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	237016290	.	G	.	.	PASS	END=237016370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	237016371	.	C	.	.	PASS	END=237016391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	237016392	.	G	.	.	PASS	END=237016439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	237023082	.	G	.	.	PASS	END=237023097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	237023098	.	G	.	.	PASS	END=237023156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	237023157	.	G	.	.	PASS	END=237023209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	237023210	.	T	.	.	PASS	END=237023234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	237023235	.	G	.	.	PASS	END=237023248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	237023249	.	G	.	.	PASS	END=237023270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	237023271	.	A	.	.	PASS	END=237023273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	237024374	.	T	.	.	PASS	END=237024382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:59
chr1	237024383	.	C	.	96.06	PASS	DP=115;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:90:115:66.07:59:66
chr1	237024384	.	T	.	.	PASS	END=237024386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:59
chr1	237024387	.	C	.	135.26	PASS	DP=115;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:87:115:99:59:99
chr1	237024388	.	T	.	.	PASS	END=237024390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:59
chr1	237024391	.	C	T	17.30	LowGQX;LowQD;SB	BaseQRankSum=0.877;DP=109;Dels=0.00;FS=46.663;HRun=5;HaplotypeScore=112.4493;MQ=59;MQ0=0;MQRankSum=-1.222;QD=0.16;ReadPosRankSum=-5.007;SB=-2.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:74,10:109:47.22:47,0,969:59:17:0.119
chr1	237024392	.	T	.	.	PASS	END=237024396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:59
chr1	237024397	.	C	.	23.34	LowGQX	DP=110;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:80:108:0.85:59:1
chr1	237024398	.	T	.	.	PASS	END=237024413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:59
chr1	237024414	.	G	T	84.17	LowQD;SB	BaseQRankSum=-3.015;DP=73;Dels=0.05;FS=59.794;HRun=16;HaplotypeScore=82.4716;MQ=59;MQ0=0;MQRankSum=0.142;QD=1.15;ReadPosRankSum=-1.096;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:43,26:69:99:114,0,751:59:84:0.377
chr1	237024415	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:71:99:59
chr1	237024416	.	C	T	15.50	LowGQX;LowQD;SB	BaseQRankSum=-3.721;DP=73;Dels=0.01;FS=31.875;HRun=6;HaplotypeScore=65.4745;MQ=59;MQ0=0;MQRankSum=-2.159;QD=0.21;ReadPosRankSum=-2.232;SB=-2.05	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,16:72:45.37:45,0,664:59:16:0.364
chr1	237024417	.	T	.	.	PASS	END=237024422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:59
chr1	237024423	.	A	.	15.02	LowGQX	DP=69;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:50:69:0.13:59:0
chr1	237024424	.	G	.	.	PASS	END=237024430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:78:59
chr1	237024431	.	G	.	114.24	PASS	DP=71;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:48:71:84.25:59:84
chr1	237024432	.	A	.	.	PASS	END=237024436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:59
chr1	237024437	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:72:57:59
chr1	237024438	.	A	.	.	PASS	END=237024459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:59
chr1	237024460	.	A	.	.	PASS	END=237024495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	237024496	.	C	.	.	PASS	END=237024511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	237024512	.	C	.	.	PASS	END=237024551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	237024552	.	G	.	.	PASS	END=237024628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr1	237025485	.	A	.	.	PASS	END=237025534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	237025535	.	G	.	.	PASS	END=237025598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	237025599	.	G	.	.	PASS	END=237025641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	237025642	.	A	.	.	PASS	END=237025672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	237025673	.	T	.	.	PASS	END=237025681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	237025682	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:60:60
chr1	237025683	.	T	.	.	PASS	END=237025693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:96:60
chr1	237025694	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:84:60
chr1	237026703	.	G	.	.	PASS	END=237026708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	237026709	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:48:60
chr1	237026710	.	C	.	.	PASS	END=237026717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr1	237026718	.	A	.	.	PASS	END=237026724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	237026725	.	C	.	.	PASS	END=237026755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	237026756	.	C	.	.	PASS	END=237026793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	237026794	.	G	.	.	PASS	END=237026805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	237026806	.	A	.	.	PASS	END=237026882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	237026883	.	C	.	.	PASS	END=237026905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	237037022	.	G	.	.	PASS	END=237037089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	237037090	.	T	.	.	PASS	END=237037144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	237037145	.	T	.	.	PASS	END=237037177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	237037178	.	T	.	.	PASS	END=237037191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	237037975	.	T	.	.	PASS	END=237037999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	237038000	.	T	.	.	PASS	END=237038008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	237038008	.	TA	T	163.32	LowQD	BaseQRankSum=1.563;DP=97;FS=0.000;HRun=14;HaplotypeScore=505.7218;MQ=60;MQ0=0;MQRankSum=1.005;QD=1.68;ReadPosRankSum=-0.127;SB=-75.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:72,16:97:99:202,0,1187:60:99:0.182
chr1	237038009	.	A	.	174.44	LowQD	DP=99;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:76:80:99:60:99
chr1	237038010	.	A	.	.	PASS	END=237038068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	237038069	.	A	.	.	PASS	END=237038148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	237038149	.	A	.	.	PASS	END=237038160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	237038161	.	T	C	3492.32	PASS	DP=118;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=10.4689;MQ=60;MQ0=0;QD=29.60;SB=-1593.49	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,117:118:99:3492,268,0:60:99:1.000
chr1	237038162	.	G	.	.	PASS	END=237038197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	237044004	.	A	.	.	PASS	END=237044093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	237044094	.	A	.	.	PASS	END=237044126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	237044127	.	T	.	.	PASS	END=237044149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	237044150	.	C	.	.	PASS	END=237044165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	237044166	.	G	.	.	PASS	END=237044171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr1	237044172	.	T	.	.	PASS	END=237044187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	237048370	.	T	.	.	PASS	END=237048394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	237048395	.	C	.	.	PASS	END=237048510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	237048511	.	T	.	.	PASS	END=237048521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	237048522	.	A	.	.	PASS	END=237048570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr1	237049541	.	G	.	.	PASS	END=237049590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	237049591	.	G	.	.	PASS	END=237049669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr1	237049670	.	C	.	.	PASS	END=237049696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	237049697	.	T	.	.	PASS	END=237049718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	237052430	.	A	.	.	PASS	END=237052458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	237052459	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:75:60
chr1	237052460	.	A	.	.	PASS	END=237052479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	237052480	.	G	.	.	PASS	END=237052500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	237052501	.	A	.	.	PASS	END=237052600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	237052601	.	G	.	.	PASS	END=237052636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	237052637	.	G	.	.	PASS	END=237052644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	237052645	.	A	.	.	PASS	END=237052652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr1	237052653	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:53:60
chr1	237052654	.	T	.	.	PASS	END=237052663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	237052664	.	C	.	.	PASS	END=237052681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	237052682	.	T	.	.	PASS	END=237052687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	237054382	.	A	.	.	PASS	END=237054449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	237054450	.	G	.	.	PASS	END=237054667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	237054668	.	C	.	.	PASS	END=237054680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	237057606	.	A	.	.	LowGQX	END=237057616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	237057617	.	A	.	.	LowGQX	END=237057623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	237057624	.	C	.	.	LowGQX	END=237057633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	237057634	.	C	.	.	LowGQX	END=237057641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	237057642	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:0:60
chr1	237057643	.	T	.	.	LowGQX	END=237057669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	237057670	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr1	237057671	.	T	.	.	LowGQX	END=237057684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	237057685	.	C	.	.	PASS	END=237057688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	237057689	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	237057690	.	T	.	.	PASS	END=237057693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	237057694	.	G	.	.	LowGQX	END=237057696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	237057697	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	237057698	.	C	.	.	LowGQX	END=237057699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	237057700	.	C	.	.	PASS	END=237057703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	237057704	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	237057705	.	T	.	.	PASS	END=237057707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	237057708	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	237057709	.	T	.	.	PASS	END=237057710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	237057711	.	G	.	.	LowGQX	END=237057712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	237057713	.	T	.	.	PASS	END=237057714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	237057715	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	237057716	.	C	.	.	PASS	END=237057746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	237057747	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	237057748	.	T	.	.	PASS	END=237057758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	237057759	.	G	.	.	LowGQX	END=237057761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:60
chr1	237057762	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	237057763	.	G	.	.	LowGQX	END=237057764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:27:60
chr1	237057765	.	T	.	.	PASS	END=237057768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	237057769	.	G	.	.	LowGQX	END=237057770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:60
chr1	237057771	.	G	.	.	PASS	END=237057774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	237057775	.	A	.	.	LowGQX	END=237057776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	237057777	.	G	.	.	PASS	END=237057779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	237057780	.	C	.	.	LowGQX	END=237057781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	237057782	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	237057783	.	A	.	.	LowGQX	END=237057784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:21:60
chr1	237057785	.	C	.	.	LowGQX	END=237057799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	237057800	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	237057801	.	G	.	.	LowGQX	END=237057816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	237057817	.	G	.	.	LowGQX	END=237057820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	237057821	.	C	.	.	LowGQX	END=237057827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	237057828	.	G	.	.	LowGQX	END=237057840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	237057841	.	G	.	.	LowGQX	END=237057864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	237057865	.	A	.	.	LowGQX	END=237057872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	237057873	.	T	.	.	LowGQX	END=237057874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	237057875	.	C	.	.	LowGQX	END=237057879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	237057880	.	A	.	.	LowGQX	END=237057881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	237057882	.	G	.	.	LowGQX	END=237057885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	237057886	.	T	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	237057887	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	237057888	.	A	.	.	LowGQX	END=237057892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	237057893	.	A	.	.	LowGQX	END=237057895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	237057896	.	G	.	.	LowGQX	END=237057908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	237058607	.	G	.	.	PASS	END=237058625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr1	237058626	.	G	.	.	PASS	END=237058673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	237058674	.	T	.	.	PASS	END=237058749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	237058750	.	G	.	.	PASS	END=237058761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	237058762	.	C	.	.	PASS	END=237058780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	237058781	.	T	.	.	PASS	END=237058808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	237058809	.	A	.	.	PASS	END=237058834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	237058835	.	A	.	.	PASS	END=237058836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr1	237058837	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:21:60
chr1	237058838	.	G	.	.	PASS	END=237058851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	237058852	.	T	.	.	PASS	END=237058866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	237058867	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	237058868	.	G	.	.	PASS	END=237058872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	237058873	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	237058874	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	237058875	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	237058876	.	C	.	.	PASS	END=237058878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	237058879	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr1	237058880	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	237058881	.	T	.	.	LowGQX	END=237058882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	237058883	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	237058884	.	C	.	.	LowGQX	END=237058889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	237058890	.	C	.	.	PASS	END=237058893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	237058894	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	237058895	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	237058896	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	237058897	.	T	.	.	LowGQX	END=237058899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	237058900	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	237058901	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:21:60
chr1	237060255	.	C	.	.	PASS	END=237060263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	237060264	.	A	.	.	PASS	END=237060284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	237060285	.	T	.	.	PASS	END=237060298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	237060299	.	C	.	.	PASS	END=237060338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	237060339	.	C	.	.	PASS	END=237060440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	237060441	.	T	.	.	PASS	END=237060449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	237060450	.	C	.	.	PASS	END=237060469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	237060807	.	T	.	.	PASS	END=237060844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	237060845	.	T	.	.	PASS	END=237060862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	237060863	.	G	.	.	PASS	END=237060896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	237060897	.	G	.	.	PASS	END=237060945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	237060945	.	CT	C	209.52	PASS	BaseQRankSum=-0.766;DP=43;FS=0.000;HRun=15;HaplotypeScore=245.9459;MQ=60;MQ0=0;MQRankSum=-0.547;QD=4.87;ReadPosRankSum=0.109;SB=-88.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:22,14:43:99:249,0,337:60:99:0.389
chr1	237060946	.	T	.	84.17	PASS	DP=44;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:25:27:54.17:60:54
chr1	237060947	.	T	.	.	PASS	END=237060961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	237060962	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:69:60
chr1	237060963	.	C	.	96.21	PASS	DP=51;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:36:51:66.21:60:66
chr1	237060964	.	T	.	.	PASS	END=237060972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr1	237060973	.	C	.	102.23	PASS	DP=52;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:35:52:72.23:60:72
chr1	237060974	.	T	.	.	PASS	END=237060981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr1	237060982	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:68:60
chr1	237060983	.	C	.	.	PASS	END=237060995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:87:60
chr1	237063426	.	A	.	.	LowGQX	END=237063525	GT	./.
chr1	237205754	.	C	.	.	LowGQX	END=237205805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	237205806	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	237205807	.	A	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	237205808	.	G	.	.	LowGQX	END=237205809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	237205810	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	237205811	.	G	.	.	LowGQX	END=237205815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	237205816	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	237205817	.	G	.	.	LowGQX	END=237205818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	237205819	.	A	.	.	LowGQX	END=237205823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	237205824	.	G	.	.	LowGQX	END=237205826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	237205827	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:60
chr1	237205828	.	G	.	.	LowGQX	END=237205843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	237205844	.	A	.	.	LowGQX	END=237205845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	237205846	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr1	237205847	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	237205848	.	C	.	.	LowGQX	END=237205865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	237205866	.	A	.	45.04	LowGQX	DP=7;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:7:15.05:60:15
chr1	237205867	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	237205868	.	C	.	.	LowGQX	END=237205869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	237205870	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	237205871	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr1	237205872	.	A	.	.	LowGQX	END=237205873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	237205874	.	G	.	.	LowGQX	END=237205888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	237205889	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	237205890	.	G	.	.	LowGQX	END=237205901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	237205902	.	G	.	.	LowGQX	END=237205903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	237205904	.	A	.	42.03	LowGQX	DP=7;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:7:12.04:60:12
chr1	237205905	.	G	.	.	LowGQX	END=237205911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	237205912	.	T	.	.	LowGQX	END=237205914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:60
chr1	237205915	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	237430867	.	T	.	.	LowGQX	END=237430877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	237430878	.	C	.	.	LowGQX	.	GT	./.
chr1	237430879	.	A	.	.	LowGQX	END=237430904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	237430905	.	C	.	.	LowGQX	.	GT	./.
chr1	237430906	.	C	.	.	LowGQX	END=237430915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	237430916	.	C	.	.	LowGQX	.	GT	./.
chr1	237430917	.	A	.	.	LowGQX	END=237430918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	237430919	.	C	.	.	LowGQX	.	GT	./.
chr1	237430920	.	T	.	.	LowGQX	END=237430921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	237430922	.	A	.	.	LowGQX	.	GT	./.
chr1	237430923	.	C	.	.	LowGQX	END=237430927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	237430928	.	T	.	.	LowGQX	.	GT	./.
chr1	237430929	.	C	.	.	LowGQX	END=237430936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	237430937	.	T	.	.	LowGQX	.	GT	./.
chr1	237430938	.	G	.	.	LowGQX	END=237430949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	237430950	.	G	.	.	LowGQX	.	GT	./.
chr1	237430951	.	A	.	.	LowGQX	END=237430966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	237433568	.	A	.	.	LowGQX	END=237433583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	237433584	.	T	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	237433585	.	C	.	.	LowGQX	END=237433589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	237433590	.	C	.	.	LowGQX	END=237433598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	237433599	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	237433600	.	G	.	.	LowGQX	END=237433606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	237433607	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	237433608	.	T	.	.	LowGQX	END=237433624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	237433625	.	C	T	231.32	LowGQ;LowGQX;SB	DP=8;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=28.91;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,8:8:21.07:264,21,0:60:21:1.000
chr1	237433626	.	G	.	.	LowGQX	END=237433632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	237433633	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	237433634	.	T	.	.	LowGQX	END=237433642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	237433643	.	T	.	.	LowGQX	END=237433644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	237433645	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:60
chr1	237433646	.	G	.	.	LowGQX	END=237433649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	237433650	.	T	.	.	LowGQX	END=237433652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	237433653	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	237433654	.	T	.	.	LowGQX	END=237433658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	237433659	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	237433660	.	T	.	.	LowGQX	END=237433661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	237433662	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	237433663	.	T	.	.	LowGQX	END=237433664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	237433665	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	237433666	.	T	.	.	LowGQX	END=237433667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	237433796	.	G	.	.	PASS	END=237433808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr1	237433809	.	G	.	.	PASS	END=237433828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	237433829	.	C	.	.	PASS	END=237433852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	237433853	.	A	.	.	PASS	END=237433916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	237494140	.	A	.	.	PASS	END=237494183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	237494184	.	C	.	.	PASS	END=237494227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	237494228	.	C	.	.	PASS	END=237494251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	237494252	.	G	.	.	PASS	END=237494263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	237494264	.	C	.	.	PASS	END=237494306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	237494307	.	T	.	.	PASS	END=237494322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	237494323	.	G	.	.	PASS	END=237494334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	237496871	.	A	.	.	LowGQX	END=237496970	GT	./.
chr1	237504898	.	G	.	.	LowGQX	END=237504997	GT	./.
chr1	237516098	.	A	.	.	LowGQX	END=237516216	GT	./.
chr1	237519185	.	A	.	.	PASS	END=237519190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	237519191	.	T	.	.	PASS	END=237519205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	237519206	.	T	.	.	PASS	END=237519220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	237519221	.	G	.	.	PASS	END=237519240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr1	237519241	.	T	.	.	PASS	END=237519245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	237519246	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:66:60
chr1	237519247	.	G	.	.	PASS	END=237519282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	237519283	.	T	.	.	PASS	END=237519344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	237527595	.	T	.	.	PASS	END=237527694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	237532780	.	G	.	.	PASS	END=237532859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	237532860	.	A	.	.	PASS	END=237532872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	237532873	.	C	.	.	PASS	END=237532885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	237532886	.	T	.	.	PASS	END=237532901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	237532902	.	T	.	.	PASS	END=237532908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	237537966	.	C	.	.	PASS	END=237538051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	237538052	.	T	.	.	PASS	END=237538085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	237538086	.	G	.	.	PASS	END=237538095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	237540622	.	G	.	.	PASS	END=237540631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr1	237540632	.	G	.	.	PASS	END=237540639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	237540640	.	A	.	.	PASS	END=237540664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	237540665	.	G	.	.	PASS	END=237540717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	237540718	.	T	.	.	PASS	END=237540748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	237550541	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:69:60
chr1	237550542	.	A	.	.	PASS	END=237550546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	237550547	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr1	237550548	.	T	.	.	PASS	END=237550574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr1	237550575	.	A	.	.	PASS	END=237550640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	237550641	.	A	.	.	PASS	END=237550644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	237550645	.	T	.	.	PASS	END=237550667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr1	237550668	.	G	.	.	PASS	END=237550679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr1	237550680	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:54:60
chr1	237551355	.	G	.	.	PASS	END=237551375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	237551376	.	T	A	2620.14	PASS	BaseQRankSum=-1.180;DP=97;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=0.063;QD=27.01;ReadPosRankSum=2.297;SB=-1445.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,95:97:99:2653,157,0:60:99:0.979
chr1	237551377	.	A	.	.	PASS	END=237551428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	237551429	.	A	.	.	PASS	END=237551455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	237551456	.	C	.	.	PASS	END=237551476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	237551477	.	A	.	.	PASS	END=237551496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	237551497	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:51:60
chr1	237551498	.	T	.	.	PASS	END=237551507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	237551508	.	G	.	.	PASS	END=237551514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	237580316	.	C	.	.	PASS	END=237580387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	237580388	.	A	.	.	PASS	END=237580420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	237580421	.	T	.	.	PASS	END=237580423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	237586391	.	G	.	.	PASS	END=237586424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	237586425	.	A	.	.	PASS	END=237586523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	237586524	.	A	.	.	PASS	END=237586540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	237586541	.	C	.	.	PASS	END=237586554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	237586555	.	C	.	.	PASS	END=237586580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr1	237604608	.	T	.	.	PASS	END=237604636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr1	237604637	.	G	.	.	PASS	END=237604694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	237604695	.	G	.	.	PASS	END=237604783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	237608700	.	G	.	.	PASS	END=237608765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	237608766	.	A	.	.	PASS	END=237608822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	237617690	.	G	.	.	PASS	END=237617705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	237617706	.	C	.	.	PASS	END=237617737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr1	237617738	.	T	.	.	PASS	END=237617749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:95:60
chr1	237617750	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:67:60
chr1	237617751	.	C	.	.	PASS	END=237617756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	237617757	.	C	T	683.95	PASS	BaseQRankSum=-0.016;DP=57;Dels=0.00;FS=1.169;HRun=0;HaplotypeScore=5.7768;MQ=60;MQ0=0;MQRankSum=0.214;QD=12.00;ReadPosRankSum=-1.055;SB=-246.05	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:25,31:57:99:714,0,563:60:99:0.554
chr1	237617758	.	C	.	.	PASS	END=237617783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	237617784	.	C	.	.	PASS	END=237617868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	237617869	.	G	.	.	PASS	END=237617874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	237619899	.	G	.	.	PASS	END=237620035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	237632360	.	C	.	.	PASS	END=237632475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	237632476	.	A	.	.	PASS	END=237632487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	237655095	.	T	.	.	PASS	END=237655163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	237655164	.	T	.	.	PASS	END=237655192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	237655193	.	C	.	.	PASS	END=237655209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	237655210	.	G	.	.	PASS	END=237655245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	237655246	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:57:60
chr1	237655247	.	C	.	.	PASS	END=237655254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	237656253	.	G	.	.	PASS	END=237656262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr1	237656263	.	G	.	.	PASS	END=237656267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	237656268	.	G	.	.	PASS	END=237656274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	237656275	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:66:60
chr1	237656276	.	T	.	.	PASS	END=237656290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	237656291	.	G	.	.	PASS	END=237656302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	237656303	.	G	.	.	PASS	END=237656319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	237656320	.	A	.	.	PASS	END=237656387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	237659810	.	G	.	.	PASS	END=237659819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	237659820	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:50:60
chr1	237659821	.	A	.	.	PASS	END=237659824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr1	237659825	.	T	.	.	PASS	END=237659855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	237659856	.	G	.	.	PASS	END=237659885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	237659886	.	G	.	.	PASS	END=237659914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	237659915	.	A	.	.	PASS	END=237659985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	237659986	.	T	.	.	PASS	END=237660020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	237660021	.	C	.	.	PASS	END=237660036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	237660037	.	C	.	.	PASS	END=237660052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	237664010	.	G	.	.	PASS	END=237664018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	237664019	.	G	.	.	PASS	END=237664036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:99:60
chr1	237664037	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:99:60
chr1	237664038	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:60
chr1	237664039	.	A	.	.	PASS	END=237664065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:98:60
chr1	237664066	.	T	.	.	PASS	END=237664088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	237664089	.	T	.	.	PASS	END=237664114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	237664115	.	A	.	.	PASS	END=237664203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	237666588	.	G	.	.	PASS	END=237666643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	237666644	.	G	.	.	PASS	END=237666709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	237666710	.	T	.	.	PASS	END=237666733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	237666734	.	C	.	.	PASS	END=237666783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	237666784	.	C	.	.	PASS	END=237666798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	237666799	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:57:60
chr1	237666800	.	A	.	.	PASS	END=237666805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	237670009	.	G	.	.	PASS	END=237670096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	237670097	.	G	.	.	PASS	END=237670113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	237670114	.	G	.	.	PASS	END=237670131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	237674950	.	T	.	.	PASS	END=237675014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	237675015	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:74:69:60
chr1	237675016	.	C	.	.	PASS	END=237675038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:80:60
chr1	237675039	.	C	.	.	PASS	END=237675053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	237675054	.	C	.	.	PASS	END=237675064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	237675065	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:60
chr1	237675066	.	T	.	.	PASS	END=237675073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	237675074	.	G	.	.	PASS	END=237675078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:59
chr1	237675079	.	T	.	.	PASS	END=237675084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:58
chr1	237675085	.	C	.	.	LowGQX	END=237675086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:0:58
chr1	237675087	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:58
chr1	237675088	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:58
chr1	237675089	.	G	.	.	PASS	END=237675090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:58
chr1	237675091	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:58
chr1	237693719	.	T	.	.	PASS	END=237693743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	237693744	.	G	.	.	PASS	END=237693758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	237693759	.	T	.	.	PASS	END=237693818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	237711730	.	G	.	.	PASS	END=237711746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	237711747	.	G	.	.	PASS	END=237711762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	237711763	.	C	.	.	PASS	END=237711796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	237711797	.	A	G	2506.47	PASS	DP=82;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.6815;MQ=60;MQ0=0;QD=30.57;SB=-1254.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,80:82:99:2539,196,0:60:99:1.000
chr1	237711798	.	C	.	.	PASS	END=237711890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	237713833	.	T	.	.	PASS	END=237713941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	237713942	.	C	.	.	PASS	END=237713956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	237713957	.	C	.	.	PASS	END=237713965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	237713966	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:60:60
chr1	237713967	.	T	.	.	PASS	END=237713991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	237729866	.	G	.	.	PASS	END=237729873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	237729874	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:69:60
chr1	237729875	.	G	.	.	PASS	END=237729916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	237729917	.	C	.	.	PASS	END=237729937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	237729938	.	G	.	.	PASS	END=237729961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	237729962	.	G	.	.	PASS	END=237730075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	237732444	.	G	.	.	PASS	END=237732473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	237732474	.	C	.	.	PASS	END=237732484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	237732485	.	C	.	.	PASS	END=237732509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	237732510	.	G	.	.	PASS	END=237732537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	237732538	.	A	.	.	PASS	END=237732619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	237753092	.	G	.	.	PASS	END=237753105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	237753106	.	G	.	.	PASS	END=237753124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	237753125	.	C	.	.	PASS	END=237753239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	237753240	.	T	.	.	PASS	END=237753260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	237753261	.	C	.	.	PASS	END=237753301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	237753939	.	G	.	.	LowGQX	END=237753940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	237753941	.	T	.	.	LowGQX	END=237753943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	237753944	.	C	.	.	LowGQX	END=237753946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	237753947	.	G	.	.	PASS	END=237753956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	237753957	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	237753958	.	A	.	.	PASS	END=237753961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	237753962	.	T	.	.	PASS	END=237753964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr1	237753965	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr1	237753966	.	C	.	.	PASS	END=237753971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	237753972	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:2:60
chr1	237753973	.	C	.	.	PASS	END=237753976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	237753977	.	G	.	.	PASS	END=237753988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	237753989	.	C	.	.	PASS	END=237754005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	237754006	.	T	.	.	PASS	END=237754017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	237754018	.	A	.	.	PASS	END=237754027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:59
chr1	237754028	.	T	.	.	PASS	END=237754038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:59
chr1	237754039	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:59:60
chr1	237754040	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:78:60
chr1	237754041	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:56:60
chr1	237754042	.	C	.	.	PASS	END=237754048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr1	237754049	.	T	.	.	PASS	END=237754073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	237754074	.	C	.	.	PASS	END=237754188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	237754189	.	C	.	.	PASS	END=237754253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	237754254	.	A	.	.	PASS	END=237754261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	237754262	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:57:60
chr1	237754263	.	C	.	.	PASS	END=237754272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	237754273	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:63:60
chr1	237754274	.	C	.	.	PASS	END=237754288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr1	237754289	.	A	.	.	PASS	END=237754292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr1	237755016	.	G	.	.	PASS	END=237755097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	237755098	.	A	.	.	PASS	END=237755125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	237755126	.	C	.	.	PASS	END=237755153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:81:60
chr1	237756775	.	G	.	.	PASS	END=237756812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:92:60
chr1	237756813	.	C	.	.	PASS	END=237756855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	237756856	.	G	.	.	PASS	END=237756879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	237756880	.	C	.	.	PASS	END=237756936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	237758787	.	T	.	.	PASS	END=237758814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	237758815	.	G	.	.	PASS	END=237758898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	237758899	.	C	.	.	PASS	END=237758957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	237765318	.	A	.	.	PASS	END=237765352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	237765353	.	C	.	.	PASS	END=237765412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	237765413	.	T	.	.	PASS	END=237765417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	237774061	.	G	.	.	PASS	END=237774082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	237774083	.	G	.	.	PASS	END=237774087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	237774088	.	A	.	.	PASS	END=237774102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	237774103	.	C	.	.	PASS	END=237774118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	237774119	.	C	.	.	PASS	END=237774151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:96:60
chr1	237774152	.	T	.	.	PASS	END=237774245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	237774246	.	A	.	.	PASS	END=237774264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	237774265	.	T	.	.	PASS	END=237774288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:60
chr1	237777338	.	G	.	.	PASS	END=237777390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	237777391	.	T	.	.	PASS	END=237777409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	237777410	.	A	.	.	PASS	END=237777440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr1	237777441	.	G	.	.	PASS	END=237777455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr1	237777456	.	G	.	.	PASS	END=237777596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr1	237777597	.	C	.	.	PASS	END=237777739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr1	237777740	.	T	.	.	PASS	END=237777908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:275:99:60
chr1	237777909	.	C	.	.	PASS	END=237777936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr1	237777937	.	G	.	.	PASS	END=237777986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	237777987	.	A	.	.	PASS	END=237778025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	237778026	.	A	.	.	PASS	END=237778042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	237778043	.	A	.	.	PASS	END=237778051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	237778052	.	T	.	.	PASS	END=237778066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	237778067	.	A	.	.	PASS	END=237778100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	237778101	.	A	.	.	PASS	END=237778122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	237778123	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:51:60
chr1	237778124	.	C	.	.	PASS	END=237778143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	237780585	.	G	.	.	PASS	END=237780614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	237780615	.	C	.	.	PASS	END=237780642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	237780643	.	A	.	.	PASS	END=237780727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	237780728	.	T	.	.	PASS	END=237780770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	237780771	.	A	.	.	PASS	END=237780784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	237780785	.	A	.	.	PASS	END=237780786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	237787064	.	G	.	.	PASS	END=237787139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	237787140	.	G	.	.	PASS	END=237787172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr1	237787173	.	A	.	.	PASS	END=237787187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	237788960	.	G	.	.	PASS	END=237788970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	237788971	.	G	.	.	PASS	END=237789007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	237789008	.	A	.	.	PASS	END=237789104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	237791106	.	G	.	.	PASS	END=237791135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	237791136	.	A	.	.	PASS	END=237791145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	237791146	.	G	.	.	PASS	END=237791147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	237791148	.	G	.	.	PASS	END=237791172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	237791173	.	C	.	.	PASS	END=237791189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr1	237791190	.	A	.	.	PASS	END=237791251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	237791252	.	G	.	.	PASS	END=237791327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	237791328	.	C	.	.	PASS	END=237791340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	237791341	.	T	.	.	PASS	END=237791380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	237794694	.	A	.	.	PASS	END=237794724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	237794725	.	A	.	.	PASS	END=237794786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	237794787	.	G	.	.	PASS	END=237794821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:88:60
chr1	237794822	.	T	.	.	PASS	END=237794829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	237794830	.	G	.	.	PASS	END=237794835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	237794836	.	T	.	.	PASS	END=237794843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	237794844	.	A	.	.	PASS	END=237794845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	237794846	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:27:60
chr1	237794847	.	G	.	.	PASS	END=237794853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	237796877	.	G	.	.	PASS	END=237796958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	237796959	.	G	.	.	PASS	END=237797007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:80:60
chr1	237797008	.	T	.	.	PASS	END=237797010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr1	237798151	.	C	.	.	PASS	END=237798241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	237798242	.	A	.	.	PASS	END=237798269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	237798270	.	T	.	.	PASS	END=237798289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	237798290	.	A	.	.	PASS	END=237798292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	237801616	.	T	.	.	PASS	END=237801642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	237801643	.	C	.	.	PASS	END=237801699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr1	237801700	.	T	.	.	PASS	END=237801752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	237801753	.	A	.	.	PASS	END=237801769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	237801770	.	T	C	4134.14	PASS	DP=135;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.6815;MQ=60;MQ0=0;QD=30.62;SB=-1754.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,135:135:99:4134,316,0:60:99:1.000
chr1	237801771	.	A	.	.	PASS	END=237801792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	237802314	.	G	.	.	PASS	END=237802347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	237802348	.	T	.	.	PASS	END=237802458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	237802459	.	C	.	.	PASS	END=237802481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	237802482	.	A	.	.	PASS	END=237802485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	237802486	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:61:60
chr1	237802487	.	A	.	.	PASS	END=237802501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	237804160	.	C	.	.	PASS	END=237804248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	237804249	.	A	.	.	PASS	END=237804278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	237804279	.	G	.	.	PASS	END=237804299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	237804300	.	C	.	.	PASS	END=237804302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	237806626	.	G	.	.	PASS	END=237806663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr1	237806664	.	G	.	.	PASS	END=237806680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	237806681	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:73:60
chr1	237806682	.	T	.	.	PASS	END=237806747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:84:60
chr1	237811743	.	G	.	.	PASS	END=237811753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	237811754	.	G	.	.	PASS	END=237811760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr1	237811761	.	C	.	.	PASS	END=237811806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	237811807	.	T	.	.	PASS	END=237811823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	237811824	.	G	.	.	PASS	END=237811910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	237811911	.	A	.	.	PASS	END=237811913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	237813176	.	G	.	.	PASS	END=237813189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:88:60
chr1	237813190	.	C	.	.	PASS	END=237813247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	237813248	.	A	.	.	PASS	END=237813327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	237813328	.	T	.	.	PASS	END=237813375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	237813376	.	T	.	.	PASS	END=237813397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	237814666	.	T	.	.	PASS	END=237814738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	237814739	.	T	.	.	PASS	END=237814765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	237814766	.	C	.	.	PASS	END=237814782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	237814783	.	C	T	615.79	PASS	BaseQRankSum=1.227;DP=43;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.9466;MQ=60;MQ0=0;MQRankSum=0.134;QD=14.32;ReadPosRankSum=1.859;SB=-229.73	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:21,22:43:99:646,0,621:60:99:0.512
chr1	237814784	.	G	.	.	PASS	END=237814792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	237814793	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr1	237814794	.	C	.	.	PASS	END=237814825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	237817573	.	G	.	.	PASS	END=237817618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr1	237817619	.	C	.	.	PASS	END=237817714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:290:99:60
chr1	237819110	.	A	.	.	PASS	END=237819226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	237819227	.	A	.	.	PASS	END=237819284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr1	237821173	.	A	.	.	PASS	END=237821197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	237821198	.	T	.	.	PASS	END=237821279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	237821280	.	C	.	.	PASS	END=237821310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	237821311	.	T	.	.	PASS	END=237821342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	237823224	.	T	.	.	PASS	END=237823333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	237823334	.	T	.	.	PASS	END=237823360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	237823361	.	T	.	.	PASS	END=237823362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	237823363	.	T	.	.	PASS	END=237823374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr1	237823375	.	G	.	.	PASS	END=237823379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	237824099	.	T	.	.	PASS	END=237824140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	237824141	.	A	.	.	PASS	END=237824182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	237824183	.	G	.	.	PASS	END=237824222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	237824223	.	T	.	.	PASS	END=237824247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:98:60
chr1	237829761	.	C	.	.	PASS	END=237829882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr1	237829883	.	C	.	.	PASS	END=237829902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	237829903	.	A	.	.	PASS	END=237829920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	237831112	.	A	.	.	PASS	END=237831132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	237831133	.	T	.	.	PASS	END=237831171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	237831172	.	G	.	.	PASS	END=237831210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr1	237831211	.	A	.	.	PASS	END=237831245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	237831246	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:69:60
chr1	237831247	.	T	.	.	PASS	END=237831270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	237837395	.	G	.	.	PASS	END=237837411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	237837412	.	T	.	.	PASS	END=237837517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:91:60
chr1	237837518	.	A	.	.	PASS	END=237837519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	237837999	.	T	.	.	PASS	END=237838040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	237838041	.	G	.	.	PASS	END=237838097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	237838098	.	C	.	.	PASS	END=237838136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	237838137	.	C	.	.	PASS	END=237838146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	237841330	.	A	.	.	PASS	END=237841375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	237841376	.	T	.	.	PASS	END=237841421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	237841422	.	A	.	.	PASS	END=237841428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	237841429	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:99:60
chr1	237843755	.	G	.	.	PASS	END=237843873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	237843874	.	C	.	.	PASS	END=237843877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	237850704	.	T	.	.	PASS	END=237850705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr1	237850706	.	C	.	.	PASS	END=237850707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:60
chr1	237850708	.	T	.	.	PASS	END=237850709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	237850710	.	C	.	.	PASS	END=237850724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	237850725	.	T	.	.	PASS	END=237850727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	237850728	.	T	.	.	PASS	END=237850737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	237850738	.	T	.	.	PASS	END=237850769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	237850770	.	T	.	.	PASS	END=237850849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	237862245	.	G	.	.	PASS	END=237862255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr1	237862256	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:66:60
chr1	237862257	.	C	.	.	PASS	END=237862291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr1	237862292	.	G	.	.	PASS	END=237862334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	237862335	.	T	.	.	PASS	END=237862344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	237863528	.	G	.	.	PASS	END=237863534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr1	237863535	.	G	.	.	PASS	END=237863544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	237863545	.	G	.	.	PASS	END=237863587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	237863588	.	A	.	.	PASS	END=237863617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	237863618	.	A	.	.	PASS	END=237863691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	237863692	.	A	.	.	PASS	END=237863704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	237863705	.	T	.	.	PASS	END=237863717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	237863718	.	T	G	1877.09	PASS	DP=70;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=13.3624;MQ=60;MQ0=0;QD=26.82;SB=-1034.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,70:70:99:1910,144,0:60:99:1.000
chr1	237863719	.	T	.	.	PASS	END=237863750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	237863751	.	C	.	.	PASS	END=237863766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr1	237863767	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:99:60
chr1	237865277	.	G	.	.	PASS	END=237865345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	237865346	.	A	.	.	PASS	END=237865352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	237865353	.	T	.	.	PASS	END=237865367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr1	237865368	.	G	.	.	PASS	END=237865378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr1	237868512	.	G	.	.	PASS	END=237868535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	237868536	.	G	.	.	PASS	END=237868626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	237868627	.	T	.	.	PASS	END=237868643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	237870248	.	G	.	.	PASS	END=237870278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	237870279	.	T	.	.	PASS	END=237870313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	237870314	.	G	.	.	PASS	END=237870355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	237870356	.	C	.	.	PASS	END=237870413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	237870414	.	G	.	.	PASS	END=237870444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	237870445	.	A	.	.	PASS	END=237870465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	237870466	.	A	.	.	PASS	END=237870475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	237870476	.	T	.	.	PASS	END=237870487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr1	237870488	.	A	.	.	PASS	END=237870502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	237870503	.	A	.	.	PASS	END=237870516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	237870517	.	C	.	.	PASS	END=237870532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	237870533	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	237870534	.	G	.	.	PASS	END=237870537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	237870538	.	T	.	.	LowGQX	END=237870539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	237870540	.	A	.	.	PASS	END=237870543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	237870544	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	237870545	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	237870546	.	G	.	.	LowGQX	END=237870549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	237870550	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	237870551	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	237870552	.	G	.	.	PASS	END=237870554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	237870555	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	237870556	.	G	.	.	PASS	END=237870559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	237870560	.	A	.	.	LowGQX	END=237870569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	237872157	.	G	.	.	PASS	END=237872277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	237872278	.	A	.	.	PASS	END=237872293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	237872294	.	G	.	.	PASS	END=237872307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	237872308	.	C	.	.	PASS	END=237872328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	237872329	.	A	.	.	PASS	END=237872340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	237872341	.	T	.	.	PASS	END=237872350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	237872351	.	T	.	.	PASS	END=237872368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	237872369	.	T	.	.	PASS	END=237872382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr1	237872383	.	T	.	.	PASS	END=237872396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr1	237872397	.	A	.	.	PASS	END=237872398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	237872734	.	C	.	.	PASS	END=237872768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	237872769	.	A	.	.	PASS	END=237872867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	237874994	.	C	.	.	PASS	END=237875018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	237875019	.	C	.	.	PASS	END=237875130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	237875131	.	G	.	.	PASS	END=237875150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr1	237880497	.	G	.	.	PASS	END=237880555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	237880556	.	T	.	.	PASS	END=237880588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	237880589	.	G	.	.	PASS	END=237880598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	237880599	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:70:60
chr1	237880600	.	A	.	.	PASS	END=237880613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:93:60
chr1	237880614	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:63:60
chr1	237880615	.	T	.	.	PASS	END=237880642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr1	237880643	.	C	.	.	PASS	END=237880668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr1	237881742	.	T	.	.	PASS	END=237881769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:81:60
chr1	237881770	.	C	T	1865.86	PASS	DP=61;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.6815;MQ=60;MQ0=0;QD=30.59;SB=-990.73	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,61:61:99:1899,144,0:60:99:1.000
chr1	237881771	.	G	.	.	PASS	END=237881786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	237881787	.	A	.	.	PASS	END=237881841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	237886427	.	G	.	.	PASS	END=237886489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	237886490	.	T	.	.	PASS	END=237886537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	237886538	.	A	.	.	PASS	END=237886562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	237889501	.	G	.	.	PASS	END=237889576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr1	237889577	.	C	.	.	PASS	END=237889634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	237889635	.	G	.	.	PASS	END=237889660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	237890353	.	G	.	.	PASS	END=237890436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	237890437	.	C	T	2572.63	PASS	DP=82;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.8603;MQ=60;MQ0=0;QD=31.37;SB=-808.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,82:82:99:2606,202,0:60:99:1.000
chr1	237890438	.	A	.	.	PASS	END=237890464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	237890465	.	T	.	.	PASS	END=237890490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:85:59
chr1	237890491	.	T	.	.	PASS	END=237890493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:59
chr1	237890494	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:66:59
chr1	237890495	.	C	.	.	PASS	END=237890499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:59
chr1	237893538	.	T	.	.	PASS	END=237893569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	237893570	.	G	.	.	PASS	END=237893645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	237893646	.	A	.	.	PASS	END=237893656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	237895345	.	G	.	.	PASS	END=237895423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:80:60
chr1	237895424	.	A	.	.	PASS	END=237895457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	237896951	.	G	.	.	PASS	END=237896968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	237896969	.	G	.	.	PASS	END=237897031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	237897032	.	G	.	.	PASS	END=237897097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	237897098	.	A	.	.	PASS	END=237897110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	237905525	.	T	.	.	PASS	END=237905532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	237905533	.	T	.	.	PASS	END=237905541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	237905542	.	T	.	.	PASS	END=237905562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	237905563	.	C	.	.	PASS	END=237905570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr1	237905571	.	T	.	87.17	PASS	DP=33;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:26:26:57.18:60:57
chr1	237905572	.	T	.	.	PASS	END=237905584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	237905585	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:39:60
chr1	237905586	.	A	.	.	PASS	END=237905588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:57:60
chr1	237905589	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:48:60
chr1	237905590	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:66:60
chr1	237905591	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:38:3:60
chr1	237905592	.	A	.	.	PASS	END=237905594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:60:60
chr1	237905595	.	G	.	.	PASS	END=237905597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:57:60
chr1	237905598	.	T	.	.	PASS	END=237905600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	237905601	.	T	.	.	PASS	END=237905606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:63:60
chr1	237905607	.	T	.	.	PASS	END=237905613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr1	237905614	.	G	.	.	PASS	END=237905618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:75:60
chr1	237905619	.	C	.	.	PASS	END=237905682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:81:60
chr1	237906862	.	T	.	.	LowGQX	END=237906888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	237906889	.	C	.	.	LowGQX	.	GT	./.
chr1	237906890	.	C	.	.	LowGQX	END=237906900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	237906901	.	T	.	.	LowGQX	END=237906961	GT	./.
chr1	237918339	.	C	.	.	LowGQX	END=237918438	GT	./.
chr1	237919548	.	A	.	.	PASS	END=237919648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	237919649	.	C	.	.	PASS	END=237919675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	237919676	.	G	.	.	PASS	END=237919687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:84:60
chr1	237920977	.	T	.	.	PASS	END=237921076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	237923024	.	C	.	.	PASS	END=237923052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	237923053	.	C	T	1122.06	PASS	BaseQRankSum=3.867;DP=88;Dels=0.00;FS=2.873;HRun=0;HaplotypeScore=6.7334;MQ=60;MQ0=0;MQRankSum=-0.113;QD=12.75;ReadPosRankSum=0.876;SB=-758.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:40,48:88:99:1152,0,877:60:99:0.545
chr1	237923054	.	G	.	.	PASS	END=237923120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:96:60
chr1	237923121	.	C	.	.	PASS	END=237923152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	237923153	.	G	.	.	PASS	END=237923165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	237923166	.	T	.	.	PASS	END=237923178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr1	237923179	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr1	237923180	.	T	.	.	PASS	END=237923183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	237924202	.	A	.	.	PASS	END=237924317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	237924318	.	G	.	.	PASS	END=237924351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	237924352	.	G	.	.	PASS	END=237924361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	237934067	.	G	.	.	PASS	END=237934114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	237934115	.	G	.	.	PASS	END=237934157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	237934158	.	T	.	.	PASS	END=237934187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:91:60
chr1	237935251	.	T	.	.	PASS	END=237935385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	237935386	.	C	.	.	PASS	END=237935399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	237935400	.	G	.	.	PASS	END=237935415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	237936819	.	G	.	.	PASS	END=237936857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:97:60
chr1	237936858	.	A	.	.	PASS	END=237936935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	237936936	.	A	.	.	PASS	END=237936945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	237936946	.	C	.	.	PASS	END=237936947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	237936948	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:99:60
chr1	237941965	.	G	.	.	PASS	END=237942057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	237942058	.	G	.	.	PASS	END=237942087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	237944846	.	G	.	.	PASS	END=237944878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	237944879	.	T	.	.	PASS	END=237944919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	237944920	.	T	.	.	PASS	END=237944946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:98:60
chr1	237946974	.	G	.	.	PASS	END=237947017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	237947018	.	G	.	.	PASS	END=237947037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	237947038	.	A	.	.	PASS	END=237947091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	237947092	.	C	.	.	PASS	END=237947261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	237947262	.	G	.	.	PASS	END=237947334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	237947335	.	A	.	.	PASS	END=237947504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	237947505	.	G	.	.	PASS	END=237947718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	237947719	.	T	.	.	PASS	END=237947758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr1	237947759	.	G	.	.	PASS	END=237947882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:60
chr1	237947883	.	T	.	.	PASS	END=237947909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr1	237947910	.	A	.	.	PASS	END=237947942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	237947943	.	A	.	.	PASS	END=237947982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	237947983	.	A	.	.	PASS	END=237948027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	237948028	.	A	.	.	PASS	END=237948058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	237948059	.	A	.	.	PASS	END=237948105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	237948106	.	A	.	.	PASS	END=237948224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	237948225	.	C	.	.	PASS	END=237948258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	237948259	.	A	.	.	PASS	END=237948283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	237949213	.	T	.	.	PASS	END=237949323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	237949324	.	C	.	.	PASS	END=237949336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	237951287	.	G	.	.	PASS	END=237951325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	237951326	.	A	.	.	PASS	END=237951435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr1	237954712	.	A	.	.	PASS	END=237954815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	237955404	.	G	.	.	PASS	END=237955525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	237955526	.	A	.	.	PASS	END=237955549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	237955550	.	C	.	.	PASS	END=237955577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:78:60
chr1	237955578	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:67:60
chr1	237955579	.	A	.	.	PASS	END=237955611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr1	237955612	.	T	.	.	PASS	END=237955623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	237957136	.	T	.	.	PASS	END=237957145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	237957146	.	G	A	1323.42	PASS	DP=51;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=25.95;SB=-767.19	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,51:51:99:1356,99,0:60:99:1.000
chr1	237957147	.	T	.	.	PASS	END=237957160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	237957161	.	A	G	1773.02	PASS	DP=66;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;QD=26.86;SB=-1037.62	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,66:66:99:1806,135,0:60:99:1.000
chr1	237957162	.	T	.	.	PASS	END=237957233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:84:60
chr1	237957234	.	T	.	.	PASS	END=237957282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	237957283	.	C	.	.	PASS	END=237957297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:82:60
chr1	237958520	.	C	.	.	PASS	END=237958557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	237958558	.	C	.	.	PASS	END=237958679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	237961306	.	G	.	.	PASS	END=237961346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	237961347	.	A	.	.	PASS	END=237961427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	237961428	.	G	.	.	PASS	END=237961469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	237961470	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:144:99:60
chr1	237965146	.	G	.	.	PASS	END=237965183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:81:60
chr1	237965184	.	A	.	.	PASS	END=237965245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	237969436	.	G	.	.	PASS	END=237969456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	237969457	.	G	.	.	PASS	END=237969530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	237969531	.	G	.	.	PASS	END=237969583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	237972190	.	T	.	.	PASS	END=237972236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	237972237	.	T	.	.	PASS	END=237972257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	237972258	.	T	.	.	PASS	END=237972334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	237972335	.	A	.	.	PASS	END=237972359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	237982335	.	G	.	.	PASS	END=237982344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr1	237982345	.	T	.	.	PASS	END=237982358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	237982359	.	T	.	.	PASS	END=237982421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	237982422	.	G	.	.	PASS	END=237982485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	237982486	.	A	.	.	PASS	END=237982492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	237991663	.	G	.	.	PASS	END=237991671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	237991672	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr1	237991673	.	A	.	.	PASS	END=237991762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	237993800	.	C	.	.	PASS	END=237993877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	237993878	.	C	.	.	PASS	END=237993899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	237993900	.	C	.	.	PASS	END=237993908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	237993909	.	A	.	.	PASS	END=237993930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	237994780	.	C	.	.	PASS	END=237994807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr1	237994808	.	C	.	.	PASS	END=237994892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr1	237994893	.	T	.	.	PASS	END=237994921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	237994922	.	T	.	.	PASS	END=237994932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	237995851	.	G	.	.	PASS	END=237995933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	237995934	.	A	.	.	PASS	END=237995956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr1	237995957	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:57:60
chr1	237995958	.	A	.	.	PASS	END=237995959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	238045670	.	C	.	.	LowGQX	END=238045851	GT	./.
chr1	238046040	.	A	.	.	LowGQX	END=238046148	GT	./.
chr1	238048059	.	G	.	.	LowGQX	END=238048158	GT	./.
chr1	238048463	.	A	.	.	LowGQX	END=238048617	GT	./.
chr1	238048689	.	A	.	.	LowGQX	END=238048882	GT	./.
chr1	238049054	.	A	.	.	LowGQX	END=238049060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238049061	.	G	.	.	LowGQX	.	GT	./.
chr1	238049062	.	C	.	.	LowGQX	END=238049064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238049065	.	T	.	.	LowGQX	.	GT	./.
chr1	238049066	.	C	.	.	LowGQX	END=238049074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238049075	.	C	.	.	LowGQX	.	GT	./.
chr1	238049076	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238049077	.	G	.	.	LowGQX	END=238049079	GT	./.
chr1	238049080	.	T	.	.	LowGQX	END=238049082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238049083	.	G	.	.	LowGQX	.	GT	./.
chr1	238049084	.	G	.	.	LowGQX	END=238049088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238049089	.	C	.	.	LowGQX	.	GT	./.
chr1	238049090	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238049091	.	G	.	.	LowGQX	END=238049092	GT	./.
chr1	238049093	.	C	.	.	LowGQX	END=238049097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238049098	.	T	.	.	LowGQX	.	GT	./.
chr1	238049099	.	C	.	.	LowGQX	END=238049101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238049102	.	A	.	.	LowGQX	END=238049104	GT	./.
chr1	238049105	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238049106	.	A	.	.	LowGQX	.	GT	./.
chr1	238049107	.	A	.	.	LowGQX	END=238049111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238049112	.	G	.	.	LowGQX	.	GT	./.
chr1	238049113	.	G	.	.	LowGQX	END=238049117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238049118	.	A	.	.	LowGQX	.	GT	./.
chr1	238049119	.	G	.	.	LowGQX	END=238049128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238049129	.	C	.	.	LowGQX	END=238049130	GT	./.
chr1	238049131	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238049132	.	G	.	.	LowGQX	.	GT	./.
chr1	238049133	.	A	.	.	LowGQX	END=238049136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238049137	.	T	.	.	LowGQX	END=238049138	GT	./.
chr1	238049139	.	A	.	.	LowGQX	END=238049140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238049141	.	T	.	.	LowGQX	.	GT	./.
chr1	238049142	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238049143	.	G	.	.	LowGQX	.	GT	./.
chr1	238049144	.	G	.	.	LowGQX	END=238049147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238049148	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	238049149	.	A	.	.	LowGQX	.	GT	./.
chr1	238049150	.	G	.	.	LowGQX	END=238049155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	238049156	.	A	.	.	LowGQX	END=238049157	GT	./.
chr1	238049158	.	T	.	.	LowGQX	END=238049168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	238049169	.	C	.	.	LowGQX	.	GT	./.
chr1	238049170	.	T	.	.	LowGQX	END=238049171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	238049172	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	238049173	.	A	.	.	LowGQX	END=238049181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	238049182	.	G	.	.	LowGQX	.	GT	./.
chr1	238049183	.	G	.	.	LowGQX	END=238049186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	238049187	.	C	.	.	LowGQX	.	GT	./.
chr1	238049188	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238050069	.	A	.	.	LowGQX	END=238050141	GT	./.
chr1	238050142	.	T	.	.	LowGQX	END=238050170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238050672	.	A	.	.	LowGQX	END=238050753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238050754	.	T	.	.	LowGQX	END=238050863	GT	./.
chr1	238051656	.	A	.	.	LowGQX	END=238051795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	238051796	.	C	.	.	LowGQX	END=238051812	GT	./.
chr1	238053165	.	A	.	.	LowGQX	END=238053271	GT	./.
chr1	238053353	.	A	.	.	LowGQX	END=238053478	GT	./.
chr1	238053759	.	A	.	.	LowGQX	END=238053937	GT	./.
chr1	240070750	.	C	.	.	PASS	END=240070765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	240070766	.	T	.	.	PASS	END=240070806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	240070807	.	C	.	.	PASS	END=240070929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	240070930	.	T	.	.	PASS	END=240071011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr1	240071012	.	C	.	.	PASS	END=240071247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr1	240071248	.	G	.	.	PASS	END=240071433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr1	240071434	.	A	.	.	PASS	END=240071580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	240071581	.	C	.	.	PASS	END=240071821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr1	240071822	.	T	.	.	PASS	END=240071940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	240071941	.	G	.	.	PASS	END=240072114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	240072115	.	C	.	.	PASS	END=240072373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr1	240072374	.	C	.	.	PASS	END=240072484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	240072485	.	G	.	.	PASS	END=240072515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr1	240072516	.	G	.	.	PASS	END=240072526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr1	240254968	.	T	.	.	LowGQX	END=240255095	GT	./.
chr1	240255096	.	G	.	.	LowGQX	END=240255123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	240255124	.	G	.	.	LowGQX	END=240255153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	240255154	.	G	.	.	LowGQX	END=240255160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	240255161	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	240255162	.	G	.	.	LowGQX	END=240255175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	240255176	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	240255177	.	C	.	.	LowGQX	END=240255181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	240255182	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	240255183	.	G	.	.	LowGQX	END=240255184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	240255185	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	240255186	.	G	.	.	LowGQX	END=240255192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	240255193	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	240255194	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	240255195	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	240255196	.	C	.	.	LowGQX	END=240255202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	240255203	.	G	T	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.727;QD=0.79;ReadPosRankSum=0.727;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,1:4:30.29:30,0,70:60:3:0.250
chr1	240255204	.	G	.	.	LowGQX	END=240255205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	240255206	.	A	.	.	LowGQX	END=240255209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	240255210	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	240255211	.	C	.	.	LowGQX	END=240255212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	240255213	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	240255214	.	G	.	.	LowGQX	END=240255222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	240255223	.	C	.	.	LowGQX	END=240255227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	240255228	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	240255229	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	240255230	.	T	.	.	LowGQX	END=240255233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	240255234	.	A	.	.	LowGQX	END=240255235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	240255236	.	G	.	.	LowGQX	END=240255245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	240255246	.	A	.	.	LowGQX	END=240255249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	240255250	.	G	.	.	LowGQX	END=240255251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	240255252	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	240255253	.	C	.	42.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.03:60:12
chr1	240255254	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	240255255	.	G	.	.	LowGQX	END=240255263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	240255264	.	G	.	.	LowGQX	END=240255265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	240255266	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	240255267	.	C	.	.	LowGQX	END=240255268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	240255269	.	C	.	.	LowGQX	END=240255274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	240255275	.	G	.	.	LowGQX	END=240255281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	240255282	.	C	.	.	LowGQX	END=240255295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	240255296	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	240255297	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	240255298	.	C	.	.	LowGQX	END=240255307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	240255308	.	C	.	.	LowGQX	END=240255309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	240255310	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	240255311	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:21:60
chr1	240255312	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	240255313	.	C	.	.	LowGQX	END=240255314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	240255315	.	C	.	.	PASS	END=240255316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	240255317	.	C	.	.	PASS	END=240255321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	240255322	.	G	.	.	PASS	END=240255325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	240255326	.	C	.	.	PASS	END=240255327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr1	240255328	.	C	.	.	PASS	END=240255339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	240255340	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:72:60
chr1	240255341	.	C	.	.	PASS	END=240255352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr1	240255353	.	G	.	.	PASS	END=240255394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:84:60
chr1	240255395	.	C	.	.	PASS	END=240255430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	240255431	.	C	.	.	PASS	END=240255481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	240255482	.	G	.	.	PASS	END=240255550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	240255551	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:99:60
chr1	240255552	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:62:60
chr1	240255553	.	C	.	.	PASS	END=240255568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	240255568	.	GGGC	G	2766.86	PASS	BaseQRankSum=-1.165;DP=68;FS=0.000;HRun=0;HaplotypeScore=217.2223;MQ=60;MQ0=0;MQRankSum=1.669;QD=40.69;ReadPosRankSum=0.157;SB=-53.47	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:17,51:68:99:2809,158,0:60:99:0.750
chr1	240255569	.	G	.	.	LowGQX	DP=68;MQ=60;MQ0=0	GT:AD:DP:MQ	.:16:17:60
chr1	240255570	.	G	.	.	LowGQX	DP=68;MQ=60;MQ0=0	GT:AD:DP:MQ	.:16:17:60
chr1	240255571	.	C	.	.	LowGQX	DP=67;MQ=60;MQ0=0	GT:AD:DP:MQ	.:16:16:60
chr1	240255572	.	G	.	.	PASS	END=240255626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	240255627	.	C	.	.	PASS	END=240255702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	240255703	.	G	.	.	PASS	END=240255799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	240255800	.	T	.	.	PASS	END=240255949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	240255950	.	A	.	.	PASS	END=240256112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	240256113	.	C	.	.	PASS	END=240256143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	240256144	.	C	.	.	PASS	END=240256171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	240256172	.	G	.	.	PASS	END=240256223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:59
chr1	240256224	.	C	.	.	PASS	END=240256259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	240256260	.	C	.	.	PASS	END=240256384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	240256385	.	C	.	.	PASS	END=240256499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	240256500	.	A	.	.	PASS	END=240256656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	240256657	.	C	.	.	PASS	END=240256724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	240256725	.	A	.	.	PASS	END=240256778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:77:60
chr1	240256779	.	C	.	.	PASS	END=240256806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	240256807	.	C	.	.	PASS	END=240256821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	240256822	.	C	A	707.04	PASS	BaseQRankSum=2.832;DP=36;Dels=0.00;FS=1.498;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.692;QD=19.64;ReadPosRankSum=-0.988;SB=-275.05	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,23:36:99:737,0,326:60:99:0.639
chr1	240256823	.	G	.	.	PASS	END=240256849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	240256850	.	C	.	.	PASS	END=240256869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	240256870	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:39:60
chr1	240256871	.	G	.	.	PASS	END=240256881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	240256882	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:27:60
chr1	240256883	.	C	.	.	PASS	END=240256895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	240256896	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:45:60
chr1	240256897	.	G	.	.	PASS	END=240256943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr1	240256944	.	G	.	.	PASS	END=240256955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr1	240256956	.	C	.	.	PASS	END=240257017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	240257018	.	T	.	.	PASS	END=240257025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	240257026	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:60:60
chr1	240286477	.	A	.	.	PASS	END=240286516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr1	240286517	.	A	.	.	PASS	END=240286604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	240286605	.	C	.	.	PASS	END=240286637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr1	240286638	.	C	.	.	PASS	END=240286647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr1	240341219	.	A	.	.	PASS	END=240341229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:48:60
chr1	240341230	.	C	.	.	PASS	END=240341250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:54:60
chr1	240341251	.	A	.	.	PASS	END=240341256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:60
chr1	240341257	.	C	.	.	PASS	END=240341270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr1	240341271	.	G	.	.	PASS	END=240341343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr1	240341344	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:69:60
chr1	240341345	.	A	.	.	PASS	END=240341358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	240341359	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:55:60
chr1	240341360	.	C	.	.	PASS	END=240341370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	240343425	.	T	.	.	LowGQX	END=240343524	GT	./.
chr1	240351485	.	G	.	.	PASS	END=240351583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	240351584	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:99:60
chr1	240370097	.	A	.	.	PASS	END=240370129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	240370130	.	C	.	.	PASS	END=240370174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr1	240370175	.	C	.	.	PASS	END=240370211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	240370212	.	G	.	.	PASS	END=240370261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	240370262	.	C	.	.	PASS	END=240370362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr1	240370363	.	G	.	.	PASS	END=240370530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr1	240370531	.	A	.	.	PASS	END=240370587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	240370588	.	G	.	.	PASS	END=240370701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	240370702	.	A	G	2410.96	PASS	BaseQRankSum=1.329;DP=228;Dels=0.00;FS=1.072;HRun=0;HaplotypeScore=24.6721;MQ=60;MQ0=0;MQRankSum=-0.256;QD=10.57;ReadPosRankSum=-0.917;SB=-1200.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:131,95:228:99:2441,0,3314:60:99:0.420
chr1	240370703	.	C	.	.	PASS	END=240370748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:59
chr1	240370749	.	A	.	.	PASS	END=240370790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:59
chr1	240370791	.	T	.	.	PASS	END=240370844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:59
chr1	240370845	.	T	.	282.79	PASS	DP=189;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:138:189:99:59:99
chr1	240370846	.	C	.	.	PASS	END=240370850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:59
chr1	240370851	.	T	.	.	PASS	END=240370877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:57
chr1	240370878	.	T	.	.	PASS	END=240370934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:93:53
chr1	240370935	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:77:0:53
chr1	240370936	.	A	.	.	PASS	END=240370959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:91:53
chr1	240370960	.	G	.	.	PASS	END=240370966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:53
chr1	240370967	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:57:56
chr1	240370968	.	A	.	47.95	LowGQX	DP=42;MQ=55;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:32:42:17.96:55:18
chr1	240370969	.	A	.	.	PASS	END=240370979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:53
chr1	240370980	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:60:53
chr1	240370981	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:99:53
chr1	240370982	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:69:53
chr1	240370983	.	C	.	78.08	PASS	DP=41;MQ=53;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:31:41:48.08:53:48
chr1	240370984	.	C	.	.	PASS	END=240370985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:53
chr1	240370986	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:63:53
chr1	240370987	.	C	.	.	PASS	END=240370994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:52
chr1	240370995	.	G	.	12	LowGQX	DP=39;MQ=52;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:23:39:0.06:52:0
chr1	240370996	.	G	.	.	PASS	END=240370997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:51
chr1	240370998	.	A	.	29.80	LowGQX	DP=33;MQ=51;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:22:33:2.91:51:3
chr1	240370999	.	G	.	.	PASS	END=240371002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:48
chr1	240371003	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:60:48
chr1	240371004	.	A	.	.	PASS	END=240371008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:45
chr1	240371009	.	T	.	25.35	LowGQX	DP=37;MQ=45;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:23:37:1.28:45:1
chr1	240371010	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:72:45
chr1	240371011	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:54:45
chr1	240371012	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:75:45
chr1	240371013	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:33:45
chr1	240371014	.	C	.	.	PASS	END=240371015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:46
chr1	240371016	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:36:2:45
chr1	240371017	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:69:43
chr1	240371018	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:36:43
chr1	240371019	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:66:43
chr1	240371020	.	C	.	.	PASS	END=240371030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:41
chr1	240371031	.	A	.	81.09	PASS	DP=44;MQ=41;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:30:44:51.10:41:51
chr1	240371032	.	G	.	.	PASS	END=240371045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:72:35
chr1	240371046	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:33:35
chr1	240371047	.	C	.	.	PASS	END=240371048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:72:34
chr1	240371049	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:60:34
chr1	240371050	.	C	.	.	PASS	END=240371051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:84:31
chr1	240371052	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:68:60:31
chr1	240371053	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:71:90:31
chr1	240371054	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:71:69:31
chr1	240371055	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:73:48:30
chr1	240371056	.	C	.	.	PASS	END=240371058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:75:30
chr1	240371059	.	G	.	.	PASS	END=240371060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:51:26
chr1	240371061	.	A	.	.	PASS	END=240371062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:45:26
chr1	240371063	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:73:75:25
chr1	240371064	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:70:39:25
chr1	240371065	.	G	.	.	PASS	END=240371066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:63:25
chr1	240371067	.	C	.	.	PASS	END=240371069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:44:24
chr1	240371070	.	A	.	.	PASS	END=240371072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:69:24
chr1	240371073	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:73:42:25
chr1	240371074	.	C	.	.	PASS	END=240371075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:69:26
chr1	240371076	.	T	.	.	PASS	END=240371078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:54:25
chr1	240371079	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:33:24
chr1	240371080	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:60:24
chr1	240371081	.	C	.	.	PASS	END=240371083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:39:24
chr1	240371084	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:51:24
chr1	240371085	.	A	T	11.31	LowGQX;LowQD;SB	BaseQRankSum=-1.859;DP=47;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=29.0393;MQ=25;MQ0=5;MQRankSum=-0.190;QD=0.24;ReadPosRankSum=1.039;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,16:47:40.97:41,0,159:25:11:0.364
chr1	240371086	.	C	.	.	PASS	END=240371087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:51:23
chr1	240371088	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:36:23
chr1	240371089	.	C	.	.	PASS	END=240371101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:48:22
chr1	240371102	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:42:22
chr1	240371103	.	A	.	.	PASS	END=240371105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:57:21
chr1	240371106	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:60:51:19
chr1	240371107	.	C	.	.	LowMQ	END=240371114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:30:17
chr1	240371115	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:53:21:17
chr1	240371116	.	C	.	.	LowMQ	END=240371117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:33:17
chr1	240371118	.	A	.	22.33	LowGQX;LowMQ	DP=49;MQ=17;MQ0=18	GT:AD:DP:GQ:MQ:GQX	0/0:29:49:0.68:17:1
chr1	240371119	.	C	.	.	LowMQ	END=240371120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:30:17
chr1	240371121	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:47:27:17
chr1	240371122	.	C	.	.	LowMQ	END=240371126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:30:16
chr1	240371127	.	A	.	.	LowGQX;LowMQ	END=240371128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:21:16
chr1	240371129	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:57:30:16
chr1	240371130	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:57:18:15
chr1	240371131	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:59:30:17
chr1	240371132	.	G	.	.	LowGQX;LowMQ	END=240371135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:21:16
chr1	240371136	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:76:24:15
chr1	240371137	.	C	.	.	LowMQ	END=240371138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:30:15
chr1	240371139	.	C	.	.	LowGQX;LowMQ	END=240371140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:21:14
chr1	240371141	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:75:18:14
chr1	240371142	.	T	.	.	LowGQX;LowMQ	END=240371144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:21:14
chr1	240371145	.	T	.	19.38	LowGQX;LowMQ	DP=73;MQ=14;MQ0=21	GT:AD:DP:GQ:MQ:GQX	0/0:56:73:0.36:14:0
chr1	240371146	.	C	.	.	LowGQX;LowMQ	END=240371147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:18:14
chr1	240371148	.	C	.	48.01	LowGQX;LowMQ	DP=73;MQ=14;MQ0=22	GT:AD:DP:GQ:MQ:GQX	0/0:56:73:18.02:14:18
chr1	240371149	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:79:18:14
chr1	240371150	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:81:24:14
chr1	240371151	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:81:0:14
chr1	240371152	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:87:21:14
chr1	240371153	.	T	.	.	LowGQX;LowMQ	END=240371154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:15:13
chr1	240371155	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:92:24:13
chr1	240371156	.	C	.	.	LowGQX;LowMQ	END=240371157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:15:13
chr1	240371158	.	G	.	.	LowGQX;LowMQ	END=240371159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:18:12
chr1	240371160	.	A	.	.	LowGQX;LowMQ	END=240371161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:12:12
chr1	240371162	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:87:18:12
chr1	240371163	.	G	.	.	LowGQX;LowMQ	END=240371164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:12:12
chr1	240371165	.	G	.	.	LowGQX;LowMQ	END=240371167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:18:12
chr1	240371168	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:101:15:12
chr1	240371169	.	A	.	.	LowGQX;LowMQ	END=240371170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:24:12
chr1	240371171	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:106:18:12
chr1	240371172	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:103:6:12
chr1	240371173	.	C	.	.	LowGQX;LowMQ	END=240371176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:21:12
chr1	240371177	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:96:18:12
chr1	240371178	.	A	.	35.99	LowGQX;LowMQ	DP=96;MQ=12;MQ0=41	GT:AD:DP:GQ:MQ:GQX	0/0:65:96:6:12:6
chr1	240371179	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:98:24:12
chr1	240371180	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:95:12:12
chr1	240371181	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:97:3:12
chr1	240371182	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:113:24:11
chr1	240371183	.	C	.	.	LowGQX;LowMQ	END=240371184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:18:11
chr1	240371185	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:112:24:11
chr1	240371186	.	T	.	.	LowGQX;LowMQ	END=240371187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:12:11
chr1	240371188	.	C	.	.	LowGQX;LowMQ	END=240371189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:27:11
chr1	240371190	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:122:15:11
chr1	240371191	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:117:27:11
chr1	240371192	.	G	.	.	LowGQX;LowMQ	END=240371195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:18:11
chr1	240371196	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:108:15:11
chr1	240371197	.	G	.	.	LowGQX;LowMQ	END=240371198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:27:11
chr1	240371199	.	C	.	.	LowGQX;LowMQ	END=240371201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:18:11
chr1	240371202	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:107:27:11
chr1	240371203	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:106:30:11
chr1	240371204	.	C	.	.	LowGQX;LowMQ	END=240371205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:18:12
chr1	240371206	.	C	.	.	LowGQX;LowMQ	END=240371209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:27:12
chr1	240371210	.	C	.	.	LowGQX;LowMQ	END=240371211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:15:13
chr1	240371212	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:74:33:14
chr1	240371213	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:73:24:14
chr1	240371214	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:74:18:14
chr1	240371215	.	C	.	.	LowMQ	END=240371216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:30:14
chr1	240371217	.	A	.	16.43	LowGQX;LowMQ	DP=63;MQ=15;MQ0=29	GT:AD:DP:GQ:MQ:GQX	0/0:46:63:0.18:15:0
chr1	240371218	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:67:33:14
chr1	240371219	.	T	.	.	LowGQX;LowMQ	END=240371220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:21:14
chr1	240371221	.	C	.	.	LowMQ	END=240371223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:30:15
chr1	240371224	.	G	.	.	LowGQX;LowMQ	END=240371226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:21:15
chr1	240371227	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:56:33:15
chr1	240371228	.	C	.	.	LowGQX;LowMQ	END=240371229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:24:14
chr1	240371230	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:58:30:13
chr1	240371231	.	G	.	.	LowGQX;LowMQ	END=240371232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:18:13
chr1	240371233	.	A	.	.	LowGQX;LowMQ	END=240371235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:21:13
chr1	240371236	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:58:33:15
chr1	240371237	.	C	.	.	LowGQX;LowMQ	END=240371240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:24:15
chr1	240371241	.	T	.	.	LowMQ	END=240371242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:30:17
chr1	240371243	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:46:24:17
chr1	240371244	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:46:18:17
chr1	240371245	.	C	.	.	LowMQ	END=240371246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:33:17
chr1	240371247	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:46:24:17
chr1	240371248	.	C	.	.	LowMQ	END=240371249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:33:17
chr1	240371250	.	A	.	47.98	LowGQX;LowMQ	DP=44;MQ=18;MQ0=20	GT:AD:DP:GQ:MQ:GQX	0/0:33:44:17.99:18:18
chr1	240371251	.	C	.	.	LowMQ	END=240371252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:30:17
chr1	240371253	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:47:18:13
chr1	240371254	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:50:8:15
chr1	240371255	.	C	.	.	LowMQ	END=240371256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:30:15
chr1	240371257	.	G	.	.	LowGQX;LowMQ	END=240371261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:21:14
chr1	240371262	.	G	.	.	LowGQX;LowMQ	END=240371264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:15:13
chr1	240371265	.	C	.	.	LowGQX;LowMQ	END=240371266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:21:13
chr1	240371267	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:62:12:13
chr1	240371268	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:63:18:13
chr1	240371269	.	C	.	.	LowGQX;LowMQ	END=240371271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:21:13
chr1	240371272	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:58:15:13
chr1	240371273	.	C	.	.	LowGQX;LowMQ	END=240371275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:9:13
chr1	240371276	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:62:18:13
chr1	240371277	.	T	.	.	LowGQX;LowMQ	END=240371279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:12:13
chr1	240371280	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:68:9:13
chr1	240371281	.	C	.	.	LowGQX;LowMQ	END=240371282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:15:13
chr1	240371283	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:67:12:13
chr1	240371284	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:68:18:13
chr1	240371285	.	T	.	.	LowGQX;LowMQ	END=240371286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:9:12
chr1	240371287	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:74:24:12
chr1	240371288	.	C	.	.	LowGQX;LowMQ	END=240371292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:12:12
chr1	240371293	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:80:18:13
chr1	240371294	.	C	.	.	LowGQX;LowMQ	END=240371295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:6:13
chr1	240371296	.	G	.	.	LowGQX;LowMQ	END=240371297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:0:12
chr1	240371298	.	C	.	.	LowGQX;LowMQ	END=240371300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:6:12
chr1	240371301	.	A	.	.	LowGQX;LowMQ	END=240371302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:9:13
chr1	240371303	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:92:18:13
chr1	240371304	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:89:6:13
chr1	240371305	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:89:21:13
chr1	240371306	.	C	.	.	LowGQX;LowMQ	END=240371307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:9:13
chr1	240371308	.	C	.	.	LowGQX;LowMQ	END=240371309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:21:13
chr1	240371310	.	A	.	33	LowGQX;LowMQ	DP=90;MQ=14;MQ0=50	GT:AD:DP:GQ:MQ:GQX	0/0:72:90:3.01:14:3
chr1	240371311	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:92:21:14
chr1	240371312	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:93:6:13
chr1	240371313	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:94:18:13
chr1	240371314	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:100:24:13
chr1	240371315	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:100:30:13
chr1	240371316	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:99:12:13
chr1	240371317	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:101:30:13
chr1	240371318	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:99:15:14
chr1	240371319	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:101:6:13
chr1	240371320	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:102:33:14
chr1	240371321	.	C	.	.	LowGQX;LowMQ	END=240371323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:24:14
chr1	240371324	.	G	.	.	LowGQX;LowMQ	END=240371325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:15:14
chr1	240371326	.	G	.	.	LowGQX;LowMQ	END=240371327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:21:14
chr1	240371328	.	G	.	.	LowGQX;LowMQ	END=240371329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:18:14
chr1	240371330	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:101:27:14
chr1	240371331	.	C	.	.	LowGQX;LowMQ	END=240371332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:18:14
chr1	240371333	.	T	.	.	LowMQ	END=240371334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:30:14
chr1	240371335	.	C	.	.	LowMQ	END=240371336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:45:17
chr1	240371337	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:97:30:17
chr1	240371338	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:82:48:18
chr1	240371339	.	C	.	.	LowMQ	END=240371340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:33:19
chr1	240371341	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:77:51:19
chr1	240371342	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:74:39:19
chr1	240371343	.	G	.	59.99	LowMQ	DP=74;MQ=19;MQ0=33	GT:AD:DP:GQ:MQ:GQX	0/0:57:74:29.99:19:30
chr1	240371344	.	C	.	.	PASS	END=240371345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:42:20
chr1	240371346	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:70:30:20
chr1	240371347	.	C	.	.	PASS	END=240371348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:48:20
chr1	240371349	.	A	.	10.08	LowGQX	DP=65;MQ=21;MQ0=23	GT:AD:DP:GQ:MQ:GQX	0/0:45:65:0.04:21:0
chr1	240371350	.	C	.	.	PASS	END=240371352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:36:23
chr1	240371353	.	C	.	.	PASS	END=240371367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:66:24
chr1	240371368	.	C	.	.	PASS	END=240371370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:75:27
chr1	240371371	.	C	.	.	PASS	END=240371372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:28
chr1	240371373	.	A	.	57.03	LowGQX	DP=84;MQ=28;MQ0=18	GT:AD:DP:GQ:MQ:GQX	0/0:56:84:27.04:28:27
chr1	240371374	.	C	.	.	PASS	END=240371375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:87:28
chr1	240371376	.	T	.	81.03	PASS	DP=83;MQ=29;MQ0=16	GT:AD:DP:GQ:MQ:GQX	0/0:61:83:51.04:29:51
chr1	240371377	.	C	.	.	PASS	END=240371384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:78:29
chr1	240371385	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:78:51:31
chr1	240371386	.	C	.	.	PASS	END=240371393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:81:31
chr1	240371394	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:75:69:32
chr1	240371395	.	G	.	.	PASS	END=240371402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:84:33
chr1	240371403	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:76:66:34
chr1	240371404	.	C	.	.	PASS	END=240371425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:78:36
chr1	240371426	.	T	.	102.15	PASS	DP=72;MQ=43;MQ0=4	GT:AD:DP:GQ:MQ:GQX	0/0:54:72:72.16:43:72
chr1	240371427	.	G	.	.	PASS	END=240371435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:41
chr1	240371436	.	T	.	123.13	PASS	DP=76;MQ=40;MQ0=7	GT:AD:DP:GQ:MQ:GQX	0/0:56:76:93.13:40:93
chr1	240371437	.	C	.	.	PASS	END=240371441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:39
chr1	240371442	.	G	.	126.15	PASS	DP=83;MQ=39;MQ0=7	GT:AD:DP:GQ:MQ:GQX	0/0:64:83:96.16:39:96
chr1	240371443	.	C	.	.	PASS	END=240371450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:37
chr1	240371451	.	A	.	114.09	PASS	DP=84;MQ=36;MQ0=8	GT:AD:DP:GQ:MQ:GQX	0/0:67:83:84.10:36:84
chr1	240371452	.	C	.	.	PASS	END=240371474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:78:31
chr1	240371475	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:81:57:31
chr1	240371476	.	C	.	.	PASS	END=240371483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:84:27
chr1	240371484	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:86:63:27
chr1	240371485	.	C	.	.	PASS	END=240371501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:84:26
chr1	240371502	.	C	.	.	PASS	END=240371505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:61:27
chr1	240371506	.	C	.	.	PASS	END=240371510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:63:28
chr1	240371511	.	C	.	.	PASS	END=240371514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:60:27
chr1	240371515	.	C	.	.	PASS	END=240371516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:78:26
chr1	240371517	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:71:19:25
chr1	240371518	.	C	.	.	PASS	END=240371525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:69:24
chr1	240371526	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:47:24
chr1	240371527	.	G	.	.	PASS	END=240371528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:72:24
chr1	240371529	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:50:24
chr1	240371530	.	A	.	.	PASS	END=240371532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:69:24
chr1	240371533	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:33:24
chr1	240371534	.	C	.	.	PASS	END=240371535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:54:24
chr1	240371536	.	C	.	.	PASS	END=240371540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:42:23
chr1	240371541	.	A	.	63.03	PASS	DP=43;MQ=24;MQ0=11	GT:AD:DP:GQ:MQ:GQX	0/0:32:43:33.03:24:33
chr1	240371542	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:42:24
chr1	240371543	.	C	.	.	PASS	END=240371552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:30:22
chr1	240371553	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:27:24
chr1	240371554	.	A	G	288.90	LowGQ;LowGQX;SB	DP=22;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9332;MQ=26;MQ0=6;QD=13.13;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,20:22:27.08:322,27,0:26:27:1.000
chr1	240371555	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:27:25
chr1	240371556	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:30:25
chr1	240371557	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:27:26
chr1	240371558	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:12:26
chr1	240371559	.	G	.	.	LowGQX	END=240371567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:24:23
chr1	240371568	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:18:23
chr1	240371569	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:24:21
chr1	240371570	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:15:22
chr1	240371571	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:24:22
chr1	240371572	.	C	.	.	LowGQX	END=240371575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:18:20
chr1	240371576	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:15:20
chr1	240371577	.	C	.	.	LowGQX	END=240371578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:21:20
chr1	240371579	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:18:20
chr1	240371580	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:12:20
chr1	240371581	.	C	.	.	LowGQX;LowMQ	END=240371582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:18:16
chr1	240371583	.	T	.	44.98	LowGQX;LowMQ	DP=28;MQ=17;MQ0=11	GT:AD:DP:GQ:MQ:GQX	0/0:22:28:14.99:17:15
chr1	240371584	.	C	.	.	LowGQX;LowMQ	END=240371586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:21:16
chr1	240371587	.	G	.	.	LowGQX	END=240371588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:21:20
chr1	240371589	.	A	.	.	PASS	END=240371590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:30:20
chr1	240371591	.	C	.	.	LowGQX	END=240371597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:21:20
chr1	240371598	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:2:21
chr1	240371599	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:21:21
chr1	240371600	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:30:21
chr1	240371601	.	C	.	.	LowGQX	END=240371603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:18:21
chr1	240371604	.	A	.	4.58	LowGQX	DP=26;MQ=22;MQ0=9	GT:AD:DP:GQ:MQ:GQX	0/0:18:26:0.01:22:0
chr1	240371605	.	C	.	.	LowGQX	END=240371606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:15:24
chr1	240371607	.	T	.	45.02	LowGQX	DP=27;MQ=24;MQ0=9	GT:AD:DP:GQ:MQ:GQX	0/0:21:27:15.03:24:15
chr1	240371608	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:18:24
chr1	240371609	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:12:24
chr1	240371610	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:0:24
chr1	240371611	.	C	.	.	LowGQX	END=240371613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:21:22
chr1	240371614	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:33:24
chr1	240371615	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:36:24:23
chr1	240371616	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:41:0:22
chr1	240371617	.	C	.	.	PASS	END=240371618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:30:23
chr1	240371619	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:42:21:23
chr1	240371620	.	G	.	.	PASS	END=240371623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:36:23
chr1	240371624	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:46:24:24
chr1	240371625	.	G	.	.	PASS	END=240371627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:36:26
chr1	240371628	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:51:9:28
chr1	240371629	.	A	.	.	PASS	END=240371631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:42:29
chr1	240371632	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:57:30
chr1	240371633	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:39:30
chr1	240371634	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:52:21:30
chr1	240371635	.	C	.	.	PASS	END=240371637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:48:31
chr1	240371638	.	C	.	.	PASS	END=240371639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:57:33
chr1	240371640	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:47:18:34
chr1	240371641	.	C	.	.	PASS	END=240371643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:54:35
chr1	240371644	.	C	.	.	PASS	END=240371648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:63:36
chr1	240371649	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:45:41
chr1	240371650	.	C	.	.	PASS	END=240371651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:66:41
chr1	240371652	.	T	.	60.09	PASS	DP=49;MQ=41;MQ0=4	GT:AD:DP:GQ:MQ:GQX	0/0:32:49:30.10:41:30
chr1	240371653	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:63:41
chr1	240371654	.	G	.	.	PASS	END=240371656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:69:41
chr1	240371657	.	T	.	57.08	LowGQX	DP=51;MQ=42;MQ0=4	GT:AD:DP:GQ:MQ:GQX	0/0:34:51:27.08:42:27
chr1	240371658	.	G	.	.	PASS	END=240371660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:72:42
chr1	240371661	.	A	.	32.88	LowGQX	DP=53;MQ=43;MQ0=4	GT:AD:DP:GQ:MQ:GQX	0/0:42:53:2.88:43:3
chr1	240371662	.	A	.	.	PASS	END=240371664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:63:44
chr1	240371665	.	C	.	.	PASS	END=240371666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:44
chr1	240371667	.	T	.	84.11	PASS	DP=53;MQ=45;MQ0=4	GT:AD:DP:GQ:MQ:GQX	0/0:41:53:54.12:45:54
chr1	240371668	.	C	.	.	PASS	END=240371672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:84:45
chr1	240371673	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:54:45
chr1	240371674	.	C	.	.	PASS	END=240371676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:75:46
chr1	240371677	.	C	.	.	PASS	END=240371684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:90:46
chr1	240371685	.	T	.	78.12	PASS	DP=61;MQ=49;MQ0=7	GT:AD:DP:GQ:MQ:GQX	0/0:47:61:48.12:49:48
chr1	240371686	.	G	.	.	PASS	END=240371689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:48
chr1	240371690	.	T	.	90.17	PASS	DP=63;MQ=49;MQ0=8	GT:AD:DP:GQ:MQ:GQX	0/0:49:63:60.17:49:60
chr1	240371691	.	G	.	.	PASS	END=240371693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:48
chr1	240371694	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:64:68:48
chr1	240371695	.	A	.	.	PASS	END=240371709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:48
chr1	240371710	.	C	.	.	PASS	END=240371736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:54
chr1	240371737	.	C	.	.	PASS	END=240371783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:58
chr1	240371784	.	A	.	213.55	PASS	DP=128;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:98:128:99:59:99
chr1	240371785	.	C	.	.	PASS	END=240371826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:59
chr1	240371827	.	C	.	.	PASS	END=240371852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr1	240371853	.	A	.	.	PASS	END=240371878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr1	240371879	.	C	.	.	PASS	END=240371992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:304:99:60
chr1	240371993	.	A	.	.	PASS	END=240372019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr1	240372020	.	T	.	.	PASS	END=240372034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	240374389	.	A	.	.	PASS	END=240374430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	240374431	.	C	.	.	PASS	END=240374443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	240374444	.	G	.	.	PASS	END=240374500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	240374501	.	T	.	.	PASS	END=240374568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	240408814	.	T	.	.	LowGQX	END=240408913	GT	./.
chr1	240421173	.	T	.	.	PASS	END=240421188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	240421189	.	T	.	.	PASS	END=240421245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	240421246	.	T	.	.	PASS	END=240421337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	240421338	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:99:60
chr1	240448506	.	A	.	.	LowGQX	END=240448605	GT	./.
chr1	240458102	.	T	.	.	PASS	END=240458172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	240458173	.	T	.	.	PASS	END=240458189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	240458190	.	A	.	.	PASS	END=240458201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	240492372	.	C	.	.	PASS	END=240492461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	240492462	.	T	.	.	PASS	END=240492471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	240492637	.	A	.	.	PASS	END=240492690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	240492691	.	A	.	.	PASS	END=240492733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	240492734	.	G	A	1449.50	PASS	BaseQRankSum=3.061;DP=95;Dels=0.00;FS=0.867;HRun=0;HaplotypeScore=10.4683;MQ=60;MQ0=0;MQRankSum=0.513;QD=15.26;ReadPosRankSum=0.673;SB=-487.98	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,52:95:99:1479,0,1027:60:99:0.553
chr1	240492735	.	T	.	.	PASS	END=240492770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	240493871	.	A	.	.	PASS	END=240493916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	240493917	.	C	.	.	PASS	END=240493936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	240493937	.	T	.	.	PASS	END=240494051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr1	240497167	.	A	.	.	PASS	END=240497244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	240497245	.	A	.	.	PASS	END=240497264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	240497265	.	A	C	1290.10	PASS	BaseQRankSum=1.253;DP=85;Dels=0.00;FS=2.915;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-0.075;QD=15.18;ReadPosRankSum=0.277;SB=-550.64	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:43,42:85:99:1320,0,1220:60:99:0.494
chr1	240497266	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:86:99:60
chr1	240497407	.	A	.	.	PASS	END=240497480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	240497481	.	T	.	.	PASS	END=240497522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	240497523	.	T	.	.	PASS	END=240497531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	240519113	.	C	.	.	PASS	END=240519161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	240519162	.	G	.	.	PASS	END=240519203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:87:60
chr1	240519204	.	T	.	.	PASS	END=240519207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr1	240519208	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:66:60
chr1	240519209	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:33:60
chr1	240519210	.	T	.	.	PASS	END=240519212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	240555787	.	A	.	.	PASS	END=240555878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	240555879	.	T	.	.	PASS	END=240555886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	240601359	.	A	.	.	PASS	END=240601419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr1	240601420	.	C	.	.	PASS	END=240601472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	240601473	.	T	.	.	PASS	END=240601512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:84:60
chr1	240635601	.	C	.	.	PASS	END=240635606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	240635607	.	C	.	.	PASS	END=240635612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr1	240635613	.	G	.	.	PASS	END=240635622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	240635623	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:39:60
chr1	240635624	.	G	.	.	PASS	END=240635650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	240635651	.	C	.	.	PASS	END=240635674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	240635675	.	A	.	.	PASS	END=240635720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	240635721	.	T	.	.	PASS	END=240635755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	240637336	.	A	.	.	PASS	END=240637359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr1	240637360	.	C	.	.	PASS	END=240637441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	240637442	.	C	.	.	PASS	END=240637456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	240637457	.	A	.	.	PASS	END=240637489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	240637490	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:55:60
chr1	240637491	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:93:60
chr1	240643302	.	G	.	.	LowGQX	END=240643401	GT	./.
chr1	240655470	.	T	.	.	LowGQX	END=240655569	GT	./.
chr1	240656267	.	G	.	.	LowGQX	END=240656777	GT	./.
chr1	240939412	.	C	.	.	PASS	END=240939447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	240939448	.	T	.	.	PASS	END=240939476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	240939477	.	C	.	.	PASS	END=240939517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr1	240939518	.	G	.	.	PASS	END=240939564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	240963934	.	T	.	.	LowGQX	END=240963938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	240963939	.	A	.	.	LowGQX	.	GT	./.
chr1	240963940	.	C	.	.	LowGQX	END=240963943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	240963944	.	T	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	240963945	.	T	.	.	LowGQX	END=240963968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	240963969	.	C	.	.	LowGQX	.	GT	./.
chr1	240963970	.	T	.	.	LowGQX	END=240963986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	240963987	.	T	.	.	LowGQX	.	GT	./.
chr1	240963988	.	T	.	.	LowGQX	END=240963990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	240963991	.	T	.	.	LowGQX	.	GT	./.
chr1	240963992	.	A	.	.	LowGQX	END=240963994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	240963995	.	G	.	.	LowGQX	.	GT	./.
chr1	240963996	.	C	.	.	LowGQX	END=240964002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	240964003	.	A	.	.	LowGQX	END=240964004	GT	./.
chr1	240964005	.	A	.	.	LowGQX	END=240964007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	240964008	.	G	.	.	LowGQX	.	GT	./.
chr1	240964009	.	G	.	.	LowGQX	END=240964013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	240964014	.	T	.	.	LowGQX	.	GT	./.
chr1	240964015	.	T	.	.	LowGQX	END=240964016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	240964017	.	C	.	.	LowGQX	END=240964033	GT	./.
chr1	240964704	.	A	.	.	PASS	END=240964829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	240964830	.	A	.	.	PASS	END=240964844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr1	240964845	.	A	.	.	PASS	END=240964859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr1	240966153	.	A	.	.	PASS	END=240966179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	240966180	.	A	.	.	PASS	END=240966224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	240966225	.	C	.	.	PASS	END=240966318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	240966319	.	C	.	.	PASS	END=240966344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	240969389	.	G	.	.	PASS	END=240969409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	240969410	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:39:60
chr1	240969411	.	T	.	.	PASS	END=240969419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	240969420	.	G	.	.	PASS	END=240969422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	240969423	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:30:60
chr1	240969424	.	C	.	.	PASS	END=240969427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	240969428	.	C	.	.	PASS	END=240969447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	240969448	.	C	.	.	PASS	END=240969487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	240969488	.	G	.	.	PASS	END=240969578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	240969579	.	A	.	.	PASS	END=240969591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	240969592	.	G	.	.	PASS	END=240969616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	240969617	.	C	.	.	PASS	END=240969654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	240969655	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:60
chr1	240969656	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:99:60
chr1	240969657	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:63:60
chr1	240969658	.	T	.	.	PASS	END=240969677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	240975167	.	C	.	.	PASS	END=240975178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	240975179	.	T	.	.	PASS	END=240975183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	240975184	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:67:60
chr1	240975185	.	T	.	.	PASS	END=240975220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	240975221	.	A	.	.	PASS	END=240975308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:90:60
chr1	240975309	.	C	.	.	PASS	END=240975323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	240975324	.	T	.	.	PASS	END=240975333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	240975334	.	C	.	.	PASS	END=240975347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr1	240975348	.	A	.	.	PASS	END=240975359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr1	240975360	.	A	.	.	PASS	END=240975364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	240975365	.	C	.	.	PASS	END=240975376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	240975377	.	T	.	.	PASS	END=240975378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	240975379	.	T	.	.	PASS	END=240975394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	240976867	.	A	.	.	PASS	END=240976885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	240976886	.	C	.	.	PASS	END=240977017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	240977018	.	A	.	.	PASS	END=240977045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	240977046	.	T	.	.	PASS	END=240977079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	240977965	.	T	.	.	PASS	END=240978016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	240978017	.	T	.	.	PASS	END=240978034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	240978035	.	T	.	.	PASS	END=240978111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	240978112	.	A	.	.	PASS	END=240978128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr1	240979566	.	A	.	.	PASS	END=240979583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	240979584	.	A	.	.	PASS	END=240979651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	240979652	.	T	.	.	PASS	END=240979690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	240979691	.	T	.	.	PASS	END=240979712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	240979713	.	A	.	.	PASS	END=240979735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	240979736	.	A	.	.	PASS	END=240979765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	240979766	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:99:60
chr1	240990347	.	G	.	.	PASS	END=240990391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	240990392	.	T	.	.	PASS	END=240990523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	241031836	.	T	.	.	PASS	END=241031880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	241031881	.	G	.	.	PASS	END=241031895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	241031896	.	G	.	.	PASS	END=241031914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	241031915	.	C	.	.	PASS	END=241031968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	241031969	.	C	.	.	PASS	END=241032019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr1	241032024	.	A	.	.	PASS	END=241032093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr1	241032094	.	T	.	.	PASS	END=241032140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr1	241032141	.	G	.	.	PASS	END=241032184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	241032185	.	T	.	.	PASS	END=241032203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	241033304	.	T	.	.	PASS	END=241033315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	241033316	.	T	.	.	PASS	END=241033317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	241033318	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:70:60
chr1	241033319	.	T	.	.	PASS	END=241033342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	241033343	.	C	.	.	PASS	END=241033387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	241033388	.	G	.	.	PASS	END=241033460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	241033461	.	C	.	.	PASS	END=241033470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	241093953	.	G	.	.	PASS	END=241093965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	241093966	.	C	.	.	PASS	END=241094014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	241094015	.	A	.	.	PASS	END=241094119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	241099849	.	C	.	.	PASS	END=241099876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	241099877	.	A	.	.	PASS	END=241100057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	241146328	.	C	.	.	PASS	END=241146385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	241146386	.	T	.	.	PASS	END=241146430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	241146431	.	T	.	.	PASS	END=241146480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	241261915	.	G	.	.	PASS	END=241261927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	241261928	.	T	.	.	PASS	END=241261951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	241261952	.	C	.	.	PASS	END=241262016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	241262017	.	G	.	.	PASS	END=241262068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	241262069	.	A	.	.	PASS	END=241262099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	241262100	.	T	.	.	PASS	END=241262113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	241518948	.	T	.	.	PASS	END=241519030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	241519031	.	C	.	.	PASS	END=241519065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	241519066	.	C	.	.	PASS	END=241519073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	241519074	.	C	.	.	PASS	END=241519083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr1	241519084	.	A	.	.	PASS	END=241519087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr1	241519088	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:63:60
chr1	241519089	.	T	.	.	PASS	END=241519097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	241519098	.	T	A	1375.91	PASS	DP=41;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.8064;MQ=60;MQ0=0;QD=33.56;SB=-117.95	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,41:41:99:1409,108,0:60:99:1.000
chr1	241519099	.	C	.	.	PASS	END=241519107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	241519108	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:75:60
chr1	241519109	.	A	.	.	PASS	END=241519127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	241661077	.	C	.	.	PASS	END=241661088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	241661089	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:72:60
chr1	241661090	.	T	.	.	PASS	END=241661096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	241661097	.	C	.	.	PASS	END=241661098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr1	241661099	.	T	.	.	PASS	END=241661134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr1	241661135	.	G	.	.	PASS	END=241661137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:69:60
chr1	241661138	.	C	.	.	PASS	END=241661157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr1	241661158	.	T	.	.	PASS	END=241661179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr1	241661180	.	G	.	.	PASS	END=241661212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:59
chr1	241661213	.	T	.	.	PASS	END=241661298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:59
chr1	241661299	.	G	.	.	PASS	END=241661315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	241661316	.	T	.	.	PASS	END=241661321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	241663686	.	A	.	.	PASS	END=241663706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr1	241663707	.	A	.	.	PASS	END=241663723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	241663724	.	C	.	.	PASS	END=241663734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	241663735	.	A	.	.	PASS	END=241663757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr1	241663758	.	T	.	.	PASS	END=241663774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:59
chr1	241663775	.	T	.	.	PASS	END=241663861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:59
chr1	241663862	.	A	.	.	PASS	END=241663891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:95:60
chr1	241663892	.	T	.	.	PASS	END=241663919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	241663920	.	A	.	.	PASS	END=241663930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr1	241663931	.	G	.	.	PASS	END=241663940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr1	241663941	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:60:60
chr1	241665692	.	A	.	.	PASS	END=241665710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	241665711	.	A	.	.	PASS	END=241665802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	241665803	.	A	.	.	PASS	END=241665837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	241665838	.	T	.	.	PASS	END=241665851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	241665852	.	T	.	.	PASS	END=241665861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	241665862	.	T	.	.	PASS	END=241665881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr1	241665882	.	C	.	.	PASS	END=241665884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr1	241665885	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:18:60
chr1	241665886	.	C	.	.	PASS	END=241665900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	241665901	.	G	.	.	PASS	END=241665921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr1	241667291	.	C	.	.	PASS	END=241667310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	241667311	.	T	.	.	PASS	END=241667333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	241667334	.	G	.	.	PASS	END=241667448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	241667449	.	C	.	.	PASS	END=241667471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	241667472	.	T	.	.	PASS	END=241667486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	241667487	.	C	.	.	PASS	END=241667499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	241667500	.	G	.	.	PASS	END=241667510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	241667511	.	T	.	.	PASS	END=241667538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr1	241667539	.	G	.	.	PASS	END=241667552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr1	241667553	.	A	.	.	PASS	END=241667580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	241667581	.	A	.	.	PASS	END=241667589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	241667590	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	241667591	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	241667592	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	241667593	.	C	.	.	LowGQX	END=241667596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr1	241669252	.	A	.	.	PASS	END=241669281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	241669282	.	A	.	.	PASS	END=241669347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	241669348	.	T	.	.	PASS	END=241669366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	241669367	.	A	.	.	PASS	END=241669518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr1	241669519	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:187:99:60
chr1	241671852	.	G	.	.	PASS	END=241671860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	241671861	.	T	.	.	PASS	END=241671872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr1	241671873	.	A	.	.	PASS	END=241671879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	241671880	.	T	.	.	PASS	END=241671893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	241671894	.	C	.	.	PASS	END=241671900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	241671901	.	A	.	.	PASS	END=241671914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	241671915	.	A	.	.	PASS	END=241671933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	241671934	.	G	.	.	PASS	END=241671968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	241671969	.	C	.	.	PASS	END=241672043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	241672044	.	A	.	.	PASS	END=241672055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr1	241672056	.	C	.	.	PASS	END=241672094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	241672095	.	A	.	.	PASS	END=241672100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	241672101	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr1	241672102	.	A	.	.	PASS	END=241672136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr1	241675216	.	A	.	.	PASS	END=241675253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr1	241675254	.	C	.	.	PASS	END=241675443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr1	241675444	.	C	.	.	PASS	END=241675494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr1	241676852	.	A	.	.	PASS	END=241676862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	241676863	.	G	.	.	PASS	END=241677003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	241677004	.	T	.	.	PASS	END=241677038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	241677039	.	A	.	.	PASS	END=241677054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	241680431	.	A	.	.	PASS	END=241680435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	241680436	.	G	.	.	PASS	END=241680446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	241680447	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:60
chr1	241680448	.	C	.	.	PASS	END=241680455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	241680456	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:66:60
chr1	241680457	.	C	.	.	PASS	END=241680490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	241680491	.	T	.	.	PASS	END=241680521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	241680522	.	G	.	.	PASS	END=241680542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	241680543	.	C	.	.	PASS	END=241680585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	241680586	.	C	.	.	PASS	END=241680630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	241680631	.	A	.	.	PASS	END=241680657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	241680658	.	C	.	.	PASS	END=241680667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	241682840	.	G	.	.	PASS	END=241682853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	241682854	.	A	.	.	PASS	END=241682870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	241682871	.	G	.	.	PASS	END=241682882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	241682883	.	G	.	.	PASS	END=241683025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	241683026	.	G	.	.	PASS	END=241683065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	241683066	.	A	.	.	PASS	END=241683073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	241695625	.	A	.	.	LowGQX	END=241695824	GT	./.
chr1	241712114	.	T	.	.	LowGQX	END=241712213	GT	./.
chr1	241712975	.	A	.	.	LowGQX	END=241713001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241713002	.	T	.	.	LowGQX	END=241713076	GT	./.
chr1	241714250	.	T	.	.	LowGQX	END=241714285	GT	./.
chr1	241714286	.	G	.	.	LowGQX	END=241714402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241718887	.	A	.	.	LowGQX	END=241718986	GT	./.
chr1	241723959	.	C	.	.	LowGQX	END=241724058	GT	./.
chr1	241725465	.	A	.	.	LowGQX	END=241725634	GT	./.
chr1	241728273	.	T	.	.	LowGQX	END=241728372	GT	./.
chr1	241729789	.	A	.	.	LowGQX	END=241729830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241729831	.	A	.	.	LowGQX	END=241729851	GT	./.
chr1	241729852	.	G	.	.	LowGQX	END=241729938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241729939	.	C	.	.	LowGQX	.	GT	./.
chr1	241729940	.	C	.	.	LowGQX	END=241729958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241731768	.	T	.	.	LowGQX	END=241731949	GT	./.
chr1	241749823	.	A	.	.	LowGQX	END=241749922	GT	./.
chr1	241749960	.	T	.	.	LowGQX	END=241750059	GT	./.
chr1	241752042	.	A	.	.	LowGQX	END=241752141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241753312	.	A	.	.	LowGQX	END=241753417	GT	./.
chr1	241753504	.	A	.	.	LowGQX	END=241753610	GT	./.
chr1	241755253	.	A	.	.	LowGQX	END=241755270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241755271	.	T	.	.	LowGQX	END=241755457	GT	./.
chr1	241756633	.	A	.	.	LowGQX	END=241756732	GT	./.
chr1	241757728	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	241757729	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	241757730	.	C	.	.	LowGQX	END=241757737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	241757738	.	G	.	.	LowGQX	.	GT	./.
chr1	241757739	.	A	.	.	LowGQX	END=241757740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	241757741	.	G	.	.	LowGQX	.	GT	./.
chr1	241757742	.	A	.	.	LowGQX	END=241757751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	241757752	.	A	.	.	LowGQX	.	GT	./.
chr1	241757753	.	C	.	.	LowGQX	END=241757757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	241757758	.	A	.	.	LowGQX	.	GT	./.
chr1	241757759	.	C	.	.	LowGQX	END=241757764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	241757765	.	A	.	.	LowGQX	.	GT	./.
chr1	241757766	.	C	.	.	LowGQX	END=241757774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241757775	.	T	.	.	LowGQX	.	GT	./.
chr1	241757776	.	T	.	.	LowGQX	END=241757782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241757783	.	T	.	.	LowGQX	END=241757784	GT	./.
chr1	241757785	.	T	.	.	LowGQX	END=241757791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241757792	.	C	.	.	LowGQX	.	GT	./.
chr1	241757793	.	T	.	.	LowGQX	END=241757795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241757796	.	C	.	.	LowGQX	.	GT	./.
chr1	241757797	.	A	.	.	LowGQX	END=241757809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241757810	.	T	.	.	LowGQX	END=241757811	GT	./.
chr1	241757812	.	G	.	.	LowGQX	END=241757825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241757826	.	G	.	.	LowGQX	.	GT	./.
chr1	241757827	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241757828	.	T	.	.	LowGQX	END=241757829	GT	./.
chr1	241757830	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241757831	.	A	.	.	LowGQX	.	GT	./.
chr1	241757832	.	A	.	.	LowGQX	END=241757840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241757841	.	G	.	.	LowGQX	.	GT	./.
chr1	241757842	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241757843	.	A	.	.	LowGQX	.	GT	./.
chr1	241757844	.	A	.	.	LowGQX	END=241757845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241757846	.	T	.	.	LowGQX	.	GT	./.
chr1	241757847	.	C	.	.	LowGQX	END=241757854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241757855	.	T	.	.	LowGQX	.	GT	./.
chr1	241757856	.	C	.	.	LowGQX	END=241757857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241757858	.	T	.	.	LowGQX	.	GT	./.
chr1	241757859	.	T	.	.	LowGQX	END=241757860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241757861	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	241757862	.	C	.	.	LowGQX	END=241757863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241757864	.	T	.	.	LowGQX	.	GT	./.
chr1	241757865	.	G	.	.	LowGQX	END=241757872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241757873	.	C	.	.	LowGQX	END=241757995	GT	./.
chr1	241761046	.	A	.	.	LowGQX	END=241761301	GT	./.
chr1	241767560	.	A	.	.	LowGQX	END=241767572	GT	./.
chr1	241767573	.	A	.	.	LowGQX	END=241767646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241767647	.	A	.	.	LowGQX	.	GT	./.
chr1	241767648	.	C	.	.	LowGQX	END=241767722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241767723	.	T	.	.	LowGQX	END=241767883	GT	./.
chr1	241779147	.	A	.	.	LowGQX	END=241779246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	241797085	.	A	.	.	LowGQX	END=241797141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797142	.	C	.	.	LowGQX	.	GT	./.
chr1	241797143	.	C	.	.	LowGQX	END=241797168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797169	.	C	.	.	LowGQX	.	GT	./.
chr1	241797170	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797171	.	A	.	.	LowGQX	.	GT	./.
chr1	241797172	.	C	.	.	LowGQX	END=241797189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797190	.	C	.	.	LowGQX	.	GT	./.
chr1	241797191	.	C	.	.	LowGQX	END=241797200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797201	.	T	.	.	LowGQX	.	GT	./.
chr1	241797202	.	T	.	.	LowGQX	END=241797206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797207	.	T	.	.	LowGQX	END=241797208	GT	./.
chr1	241797209	.	A	.	.	LowGQX	END=241797222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797223	.	T	.	.	LowGQX	.	GT	./.
chr1	241797224	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797225	.	T	.	.	LowGQX	.	GT	./.
chr1	241797226	.	C	.	.	LowGQX	END=241797233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797234	.	T	.	.	LowGQX	.	GT	./.
chr1	241797235	.	T	.	.	LowGQX	END=241797237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797238	.	G	.	.	LowGQX	END=241797239	GT	./.
chr1	241797240	.	G	.	.	LowGQX	END=241797241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797242	.	T	.	.	LowGQX	.	GT	./.
chr1	241797243	.	G	.	.	LowGQX	END=241797250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797251	.	G	.	.	LowGQX	.	GT	./.
chr1	241797252	.	A	.	.	LowGQX	END=241797295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797296	.	C	.	.	LowGQX	.	GT	./.
chr1	241797297	.	T	.	.	LowGQX	END=241797308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797309	.	T	.	.	LowGQX	END=241797310	GT	./.
chr1	241797311	.	A	.	.	LowGQX	END=241797320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797321	.	C	.	.	LowGQX	.	GT	./.
chr1	241797322	.	C	.	.	LowGQX	END=241797324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797325	.	A	.	.	LowGQX	.	GT	./.
chr1	241797326	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797327	.	T	.	.	LowGQX	END=241797328	GT	./.
chr1	241797329	.	A	.	.	LowGQX	END=241797330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797331	.	G	.	.	LowGQX	.	GT	./.
chr1	241797332	.	C	.	.	LowGQX	END=241797333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797334	.	C	.	.	LowGQX	.	GT	./.
chr1	241797335	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797336	.	G	.	.	LowGQX	.	GT	./.
chr1	241797337	.	A	.	.	LowGQX	END=241797352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797353	.	G	.	.	LowGQX	.	GT	./.
chr1	241797354	.	G	.	.	LowGQX	END=241797371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241797372	.	G	.	.	LowGQX	END=241798735	GT	./.
chr1	241798736	.	G	.	.	LowGQX	END=241798745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241798746	.	T	.	.	LowGQX	.	GT	./.
chr1	241798747	.	C	.	.	LowGQX	END=241798750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241798751	.	A	.	.	LowGQX	.	GT	./.
chr1	241798752	.	C	.	.	LowGQX	END=241798800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241798801	.	G	.	.	LowGQX	.	GT	./.
chr1	241798802	.	A	.	.	LowGQX	END=241798804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241798805	.	A	.	.	LowGQX	.	GT	./.
chr1	241798806	.	G	.	.	LowGQX	END=241798813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241798814	.	T	.	.	LowGQX	.	GT	./.
chr1	241798815	.	T	.	.	LowGQX	END=241798979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241798980	.	C	.	.	LowGQX	.	GT	./.
chr1	241798981	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241798982	.	T	.	.	LowGQX	.	GT	./.
chr1	241798983	.	C	.	.	LowGQX	END=241798984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241798985	.	T	.	.	LowGQX	.	GT	./.
chr1	241798986	.	G	.	.	LowGQX	END=241799019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241799020	.	C	.	.	LowGQX	.	GT	./.
chr1	241799021	.	T	.	.	LowGQX	END=241799050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241799051	.	G	.	.	LowGQX	.	GT	./.
chr1	241799052	.	G	.	.	LowGQX	END=241799066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241799067	.	A	.	.	LowGQX	.	GT	./.
chr1	241799068	.	T	.	.	LowGQX	END=241799070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241803182	.	A	.	.	LowGQX	END=241803565	GT	./.
chr1	241815786	.	T	.	.	LowGQX	END=241815788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241815789	.	G	.	.	LowGQX	.	GT	./.
chr1	241815790	.	G	.	.	LowGQX	END=241815829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241815830	.	T	.	.	LowGQX	END=241815931	GT	./.
chr1	241823831	.	G	.	.	LowGQX	END=241823962	GT	./.
chr1	241834375	.	G	.	.	LowGQX	END=241834478	GT	./.
chr1	241837945	.	G	.	.	LowGQX	END=241838049	GT	./.
chr1	241842786	.	G	.	.	LowGQX	END=241842897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241846788	.	G	.	.	LowGQX	END=241847003	GT	./.
chr1	241850712	.	A	.	.	LowGQX	END=241850746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241850747	.	T	.	.	LowGQX	.	GT	./.
chr1	241850748	.	T	.	.	LowGQX	END=241850797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241850798	.	A	.	.	LowGQX	END=241850899	GT	./.
chr1	241875094	.	T	.	.	LowGQX	END=241875193	GT	./.
chr1	241886597	.	A	.	.	LowGQX	END=241886740	GT	./.
chr1	241901663	.	A	.	.	LowGQX	END=241901793	GT	./.
chr1	241904816	.	A	.	.	LowGQX	END=241904968	GT	./.
chr1	241907693	.	A	.	.	LowGQX	END=241907820	GT	./.
chr1	241912847	.	A	.	.	LowGQX	END=241912851	GT	./.
chr1	241912852	.	C	.	.	LowGQX	END=241912854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241912855	.	T	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	241912856	.	C	.	.	LowGQX	END=241912909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241912910	.	A	.	.	LowGQX	.	GT	./.
chr1	241912911	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241912912	.	A	.	.	LowGQX	.	GT	./.
chr1	241912913	.	C	.	.	LowGQX	END=241912929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241912930	.	A	.	.	LowGQX	.	GT	./.
chr1	241912931	.	C	.	.	LowGQX	END=241912933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241912934	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	241912935	.	C	.	.	LowGQX	END=241912956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241912957	.	A	.	.	LowGQX	.	GT	./.
chr1	241912958	.	A	.	.	LowGQX	END=241912960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241912961	.	C	.	.	LowGQX	.	GT	./.
chr1	241912962	.	C	.	.	LowGQX	END=241913000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241913001	.	A	.	.	LowGQX	.	GT	./.
chr1	241913002	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241913003	.	C	.	.	LowGQX	END=241913008	GT	./.
chr1	241913009	.	T	.	.	LowGQX	END=241913023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	241913024	.	G	.	.	LowGQX	.	GT	./.
chr1	241913025	.	G	.	.	LowGQX	END=241913026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	241920583	.	A	.	.	LowGQX	END=241920763	GT	./.
chr1	241929518	.	A	.	.	LowGQX	END=241929653	GT	./.
chr1	241932705	.	G	.	.	LowGQX	END=241932807	GT	./.
chr1	241933908	.	C	.	.	LowGQX	END=241934007	GT	./.
chr1	241934931	.	G	.	.	LowGQX	END=241935030	GT	./.
chr1	241936093	.	G	.	.	LowGQX	END=241936233	GT	./.
chr1	241938406	.	G	.	.	LowGQX	END=241938512	GT	./.
chr1	241943226	.	A	.	.	LowGQX	END=241943443	GT	./.
chr1	241946522	.	T	.	.	LowGQX	END=241946685	GT	./.
chr1	241951149	.	A	.	.	LowGQX	END=241951338	GT	./.
chr1	241953891	.	A	.	.	LowGQX	END=241954000	GT	./.
chr1	241958500	.	G	.	.	LowGQX	END=241958599	GT	./.
chr1	241959557	.	A	.	.	LowGQX	END=241959674	GT	./.
chr1	241964426	.	T	.	.	LowGQX	END=241964525	GT	./.
chr1	242013677	.	A	.	.	PASS	END=242013750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	242013751	.	A	.	.	PASS	END=242013854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr1	242013855	.	C	.	.	PASS	END=242013930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr1	242013931	.	A	.	.	PASS	END=242013939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	242015543	.	G	.	.	PASS	END=242015560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	242015561	.	T	.	.	PASS	END=242015592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	242015593	.	G	.	.	PASS	END=242015626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	242015627	.	G	.	.	PASS	END=242015699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	242015700	.	A	.	.	PASS	END=242015737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	242015738	.	C	.	.	PASS	END=242015764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	242016609	.	T	.	.	PASS	END=242016616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	242016617	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:64:60
chr1	242016618	.	C	.	.	PASS	END=242016746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:82:60
chr1	242016747	.	C	.	.	PASS	END=242016820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr1	242016821	.	T	.	.	PASS	END=242016834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	242020596	.	T	.	.	PASS	END=242020609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr1	242020610	.	T	.	.	PASS	END=242020627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:60
chr1	242020628	.	C	.	.	PASS	END=242020639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr1	242020640	.	C	.	.	PASS	END=242020679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	242020680	.	G	.	.	PASS	END=242020753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr1	242020754	.	C	.	.	PASS	END=242020770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:60
chr1	242020771	.	T	.	.	PASS	END=242020808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr1	242020809	.	T	.	.	PASS	END=242020822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr1	242020823	.	A	.	.	PASS	END=242020829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr1	242020830	.	A	.	.	PASS	END=242020831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	242020832	.	T	.	.	PASS	END=242020834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	242020835	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	242021757	.	A	.	.	PASS	END=242021799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	242021800	.	T	.	.	PASS	END=242021844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	242021845	.	A	.	.	PASS	END=242021879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	242021880	.	C	.	.	PASS	END=242021994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	242021995	.	T	.	.	PASS	END=242022027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	242022028	.	T	.	.	PASS	END=242022049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	242022050	.	A	.	.	PASS	END=242022071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	242023768	.	A	.	.	PASS	END=242023811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	242023812	.	T	.	.	PASS	END=242023819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr1	242023820	.	T	.	.	PASS	END=242023856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	242023857	.	C	.	.	PASS	END=242023877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr1	242023878	.	C	.	.	PASS	END=242023961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	242023962	.	C	.	.	PASS	END=242024000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	242024001	.	T	.	.	PASS	END=242024007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	242024008	.	T	.	.	PASS	END=242024011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	242024012	.	C	.	.	PASS	END=242024015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	242024016	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:18:60
chr1	242024017	.	T	.	.	PASS	END=242024025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr1	242024026	.	A	.	.	PASS	END=242024037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	242024038	.	G	.	.	PASS	END=242024050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	242024051	.	C	.	.	PASS	END=242024057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	242024657	.	C	.	.	PASS	END=242024719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	242024720	.	T	.	.	PASS	END=242024805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	242024806	.	T	.	.	PASS	END=242024855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:96:60
chr1	242030081	.	A	.	.	PASS	END=242030150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	242030151	.	A	G	2628.04	PASS	DP=87;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=9.5639;MQ=60;MQ0=0;QD=30.21;SB=-1088.68	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,86:87:99:2661,208,0:60:99:1.000
chr1	242030152	.	T	.	.	PASS	END=242030170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	242030171	.	T	.	.	PASS	END=242030219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	242030220	.	C	.	.	PASS	END=242030304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	242030305	.	T	.	.	PASS	END=242030326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	242030327	.	A	.	.	PASS	END=242030348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	242030349	.	C	.	.	PASS	END=242030378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	242030379	.	A	.	.	PASS	END=242030398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	242030399	.	A	.	.	PASS	END=242030408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	242035283	.	C	.	.	PASS	END=242035286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	242035287	.	A	.	.	PASS	END=242035289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	242035290	.	T	.	.	PASS	END=242035291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:90:60
chr1	242035292	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:33:60
chr1	242035293	.	A	.	.	PASS	END=242035297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr1	242035298	.	A	.	.	PASS	END=242035310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	242035311	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:56:60
chr1	242035312	.	A	.	.	PASS	END=242035337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr1	242035338	.	G	.	.	PASS	END=242035342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr1	242035343	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:66:60
chr1	242035344	.	A	.	.	PASS	END=242035359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	242035360	.	A	.	.	PASS	END=242035429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	242035430	.	T	.	.	PASS	END=242035437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	242035438	.	G	A	1399.39	PASS	BaseQRankSum=2.266;DP=110;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=5.6815;MQ=60;MQ0=0;MQRankSum=2.649;QD=12.72;ReadPosRankSum=0.117;SB=-827.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:52,58:110:99:1429,0,1387:60:99:0.527
chr1	242035439	.	T	.	.	PASS	END=242035510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	242035511	.	A	.	.	PASS	END=242035569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	242035570	.	A	.	.	PASS	END=242035601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	242035602	.	G	.	.	PASS	END=242035621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	242035622	.	T	.	.	PASS	END=242035626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	242035627	.	T	.	.	PASS	END=242035631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr1	242042000	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	242042001	.	A	.	.	LowGQX	END=242042009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	242042010	.	T	.	.	PASS	END=242042065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	242042066	.	A	.	.	PASS	END=242042070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	242042071	.	C	.	.	PASS	END=242042080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	242042081	.	T	.	.	PASS	END=242042098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr1	242042099	.	C	.	.	PASS	END=242042120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr1	242042121	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:75:60
chr1	242042122	.	C	.	.	PASS	END=242042137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	242042138	.	G	.	.	PASS	END=242042151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	242042152	.	A	.	.	PASS	END=242042185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	242042186	.	G	.	.	PASS	END=242042198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	242042199	.	G	.	.	PASS	END=242042348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr1	242042349	.	C	.	.	PASS	END=242042429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	242042430	.	C	.	.	PASS	END=242042467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	242042468	.	T	.	.	PASS	END=242042497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	242042498	.	A	.	.	PASS	END=242042518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	242042519	.	C	.	.	PASS	END=242042535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr1	242042536	.	T	.	.	PASS	END=242042544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr1	242042545	.	A	G	868.65	SB	DP=27;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=32.17;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,27:27:72.22:902,72,0:60:72:1.000
chr1	242042546	.	G	.	.	PASS	END=242042559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	242042560	.	A	.	.	PASS	END=242042569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	242042570	.	A	.	.	PASS	END=242042572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	242042573	.	T	.	.	PASS	END=242042575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	242042576	.	A	.	.	PASS	END=242042583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	242042584	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:3:60
chr1	242042585	.	A	.	.	PASS	END=242042589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	242042590	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	242042591	.	G	.	.	PASS	END=242042593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	242042594	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	242042595	.	T	.	.	PASS	END=242042601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	242042602	.	C	.	.	LowGQX	END=242042606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	242042607	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	242042608	.	A	.	.	LowGQX	END=242042610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	242042611	.	T	.	.	LowGQX	END=242042612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	242042613	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	242042614	.	C	.	.	LowGQX	END=242042621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	242042622	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	242042623	.	C	.	.	LowGQX	END=242042631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	242042632	.	A	.	.	LowGQX	END=242042635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	242042636	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	242042637	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	242042638	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	242042639	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	242042640	.	T	.	.	LowGQX	END=242042646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	242042647	.	T	.	.	LowGQX	END=242042650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	242042651	.	T	.	.	LowGQX	END=242042653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	242042654	.	A	.	.	LowGQX	END=242042655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	242042656	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	242042657	.	C	.	.	LowGQX	END=242042658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr1	242042659	.	T	.	.	LowGQX	END=242042669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	242042670	.	T	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	242042671	.	T	.	.	LowGQX	END=242042673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	242042674	.	C	.	.	LowGQX	END=242042683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	242042684	.	T	.	.	LowGQX	END=242042686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	242042687	.	A	.	.	LowGQX	END=242042689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	242042690	.	A	G	124.77	LowGQ;LowGQX;SB	DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=31.19;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,4:4:12.04:157,12,0:60:12:1.000
chr1	242042691	.	A	.	.	LowGQX	END=242042696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	242045167	.	T	.	.	PASS	END=242045272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	242045273	.	T	.	.	PASS	END=242045274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	242045275	.	C	T	3173.05	PASS	BaseQRankSum=1.660;DP=96;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=13.3091;MQ=60;MQ0=0;MQRankSum=-0.217;QD=33.05;ReadPosRankSum=1.299;SB=-1081.71	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,95:96:99:3206,247,0:60:99:0.990
chr1	242045276	.	G	.	.	PASS	END=242045313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	242045314	.	A	.	.	PASS	END=242045368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:96:60
chr1	242045369	.	T	.	.	PASS	END=242045370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	242048565	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	242048566	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	242048567	.	A	.	.	LowGQX	END=242048573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	242048574	.	T	.	.	LowGQX	END=242048582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	242048583	.	A	.	.	LowGQX	END=242048588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	242048589	.	G	.	.	LowGQX	END=242048601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	242048602	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	242048603	.	G	.	.	LowGQX	END=242048607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	242048608	.	A	.	.	LowGQX	END=242048610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	242048611	.	T	.	.	LowGQX	END=242048621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	242048622	.	G	.	.	PASS	END=242048624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	242048625	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	242048626	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	242048627	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:2:60
chr1	242048628	.	T	.	.	PASS	END=242048646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	242048647	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:60
chr1	242048648	.	C	.	.	PASS	END=242048660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	242048661	.	A	.	.	PASS	END=242048672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr1	242048673	.	C	.	.	PASS	END=242048682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr1	242048683	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:39:60
chr1	242048684	.	T	.	.	PASS	END=242048685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr1	242048686	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:36:60
chr1	242048687	.	C	.	.	PASS	END=242048711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	242048712	.	C	.	.	PASS	END=242048745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr1	242048746	.	C	.	.	PASS	END=242048823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr1	242048824	.	T	.	.	PASS	END=242048837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr1	242048838	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:46:60
chr1	242048839	.	A	.	.	PASS	END=242048866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr1	242048867	.	C	.	.	PASS	END=242048870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr1	242048871	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:21:60
chr1	242048872	.	C	.	.	PASS	END=242048889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr1	242048890	.	T	.	.	PASS	END=242048895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	242048896	.	C	.	.	PASS	END=242048925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	242048926	.	A	.	.	PASS	END=242048933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr1	242048934	.	T	.	.	PASS	END=242048936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	242048937	.	T	.	.	PASS	END=242048944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	242052716	.	C	.	.	PASS	END=242052768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr1	242052769	.	A	.	.	PASS	END=242052875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr1	242052876	.	C	.	.	PASS	END=242052928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	242052929	.	T	.	.	PASS	END=242052953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	242159463	.	G	.	.	LowGQX	END=242159649	GT	./.
chr1	242159650	.	A	.	.	LowGQX	END=242159663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242159664	.	G	.	.	LowGQX	.	GT	./.
chr1	242159665	.	T	.	.	LowGQX	END=242159686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242159687	.	C	.	.	LowGQX	.	GT	./.
chr1	242159688	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242159689	.	T	.	.	LowGQX	.	GT	./.
chr1	242161760	.	A	.	.	LowGQX	END=242161924	GT	./.
chr1	242162056	.	C	.	.	LowGQX	END=242162155	GT	./.
chr1	242162232	.	A	.	.	LowGQX	END=242162270	GT	./.
chr1	242162271	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242162272	.	G	.	.	LowGQX	.	GT	./.
chr1	242162273	.	A	.	.	LowGQX	END=242162276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242162277	.	G	.	.	LowGQX	END=242162278	GT	./.
chr1	242162279	.	C	.	.	LowGQX	END=242162281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242162282	.	A	.	.	LowGQX	.	GT	./.
chr1	242162283	.	C	.	.	LowGQX	END=242162285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242162286	.	T	.	.	LowGQX	END=242162287	GT	./.
chr1	242162288	.	G	.	.	LowGQX	END=242162295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242162296	.	C	.	.	LowGQX	.	GT	./.
chr1	242162297	.	T	.	.	LowGQX	END=242162298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242162299	.	T	.	.	LowGQX	.	GT	./.
chr1	242162300	.	G	.	.	LowGQX	END=242162311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242162312	.	G	.	.	LowGQX	.	GT	./.
chr1	242162313	.	C	.	.	LowGQX	END=242162315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242162316	.	T	.	.	LowGQX	.	GT	./.
chr1	242162317	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242162318	.	A	.	.	LowGQX	END=242162319	GT	./.
chr1	242162320	.	T	.	.	LowGQX	END=242162321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242162322	.	G	.	.	LowGQX	.	GT	./.
chr1	242162323	.	C	.	.	LowGQX	END=242162327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242162328	.	T	.	.	LowGQX	.	GT	./.
chr1	242162329	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242162330	.	T	.	.	LowGQX	.	GT	./.
chr1	242162331	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242253154	.	T	.	.	LowGQX	END=242253414	GT	./.
chr1	242263968	.	A	.	.	LowGQX	END=242264086	GT	./.
chr1	242270971	.	A	.	.	LowGQX	END=242271143	GT	./.
chr1	242277190	.	A	.	.	LowGQX	END=242277330	GT	./.
chr1	242287768	.	A	.	.	LowGQX	END=242287969	GT	./.
chr1	242383288	.	A	.	.	LowGQX	END=242383419	GT	./.
chr1	242428587	.	G	.	.	LowGQX	END=242428624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242428625	.	A	.	.	LowGQX	END=242428752	GT	./.
chr1	242451642	.	A	.	.	LowGQX	END=242451834	GT	./.
chr1	242511399	.	A	.	.	LowGQX	END=242511544	GT	./.
chr1	242612607	.	C	.	.	LowGQX	END=242612626	GT	./.
chr1	242612627	.	G	.	.	LowGQX	END=242612657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242612658	.	T	.	.	LowGQX	.	GT	./.
chr1	242612659	.	T	.	.	LowGQX	END=242612660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242612661	.	C	.	.	LowGQX	.	GT	./.
chr1	242612662	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242612663	.	A	.	.	LowGQX	.	GT	./.
chr1	242612664	.	C	.	.	LowGQX	END=242612684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242612685	.	C	.	.	LowGQX	.	GT	./.
chr1	242612686	.	G	.	.	LowGQX	END=242612687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242612688	.	A	.	.	LowGQX	.	GT	./.
chr1	242612689	.	G	.	.	LowGQX	END=242612692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242612693	.	A	.	.	LowGQX	.	GT	./.
chr1	242612694	.	G	.	.	LowGQX	END=242612695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242612696	.	A	.	.	LowGQX	.	GT	./.
chr1	242612697	.	G	.	.	LowGQX	END=242612700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242612701	.	G	.	.	LowGQX	END=242612703	GT	./.
chr1	242612704	.	G	.	.	LowGQX	END=242612706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	242687378	.	A	.	.	LowGQX	END=242687578	GT	./.
chr1	243289381	.	A	.	.	LowGQX	END=243289536	GT	./.
chr1	243289750	.	G	.	.	LowGQX	END=243290040	GT	./.
chr1	243291527	.	T	.	.	LowGQX	END=243291679	GT	./.
chr1	243292659	.	T	.	.	LowGQX	END=243292758	GT	./.
chr1	243299374	.	A	.	.	LowGQX	END=243299592	GT	./.
chr1	243303238	.	C	.	.	LowGQX	END=243303409	GT	./.
chr1	243305560	.	A	.	.	LowGQX	END=243305765	GT	./.
chr1	243319522	.	C	.	.	LowGQX	END=243319546	GT	./.
chr1	243319547	.	G	.	.	LowGQX	END=243319663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:21
chr1	243319664	.	A	.	.	LowGQX	END=243319757	GT	./.
chr1	243327585	.	C	.	.	LowGQX	END=243328995	GT	./.
chr1	243328996	.	C	.	.	LowGQX	END=243328997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243328998	.	T	.	.	LowGQX	.	GT	./.
chr1	243328999	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329000	.	C	.	.	LowGQX	.	GT	./.
chr1	243329001	.	C	.	.	LowGQX	END=243329009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329010	.	T	.	.	LowGQX	.	GT	./.
chr1	243329011	.	G	.	.	LowGQX	END=243329013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329014	.	G	.	.	LowGQX	END=243329016	GT	./.
chr1	243329017	.	G	.	.	LowGQX	END=243329023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329024	.	T	.	.	LowGQX	.	GT	./.
chr1	243329025	.	G	.	.	LowGQX	END=243329030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329031	.	G	.	.	LowGQX	.	GT	./.
chr1	243329032	.	T	.	.	LowGQX	END=243329033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329034	.	T	.	.	LowGQX	END=243329035	GT	./.
chr1	243329036	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329037	.	T	.	.	LowGQX	.	GT	./.
chr1	243329038	.	T	.	.	LowGQX	END=243329045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329046	.	G	.	.	LowGQX	.	GT	./.
chr1	243329047	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329048	.	A	.	.	LowGQX	.	GT	./.
chr1	243329049	.	G	.	.	LowGQX	END=243329054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329055	.	T	.	.	LowGQX	.	GT	./.
chr1	243329056	.	T	.	.	LowGQX	END=243329060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329061	.	G	.	.	LowGQX	.	GT	./.
chr1	243329062	.	T	.	.	LowGQX	END=243329063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329064	.	T	.	.	LowGQX	END=243329065	GT	./.
chr1	243329066	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329067	.	C	.	.	LowGQX	.	GT	./.
chr1	243329068	.	T	.	.	LowGQX	END=243329069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329070	.	T	.	.	LowGQX	.	GT	./.
chr1	243329071	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329072	.	C	.	.	LowGQX	.	GT	./.
chr1	243329073	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329074	.	C	.	.	LowGQX	.	GT	./.
chr1	243329075	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329076	.	T	.	.	LowGQX	END=243329077	GT	./.
chr1	243329078	.	T	.	.	LowGQX	END=243329079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329080	.	C	.	.	LowGQX	.	GT	./.
chr1	243329081	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329082	.	G	.	.	LowGQX	END=243329083	GT	./.
chr1	243329084	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329085	.	G	.	.	LowGQX	.	GT	./.
chr1	243329086	.	C	.	.	LowGQX	END=243329095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329096	.	T	.	.	LowGQX	.	GT	./.
chr1	243329097	.	A	.	.	LowGQX	END=243329098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329099	.	G	.	.	LowGQX	END=243329101	GT	./.
chr1	243329102	.	A	.	.	LowGQX	END=243329103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329104	.	G	.	.	LowGQX	END=243329105	GT	./.
chr1	243329106	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329107	.	G	.	.	LowGQX	.	GT	./.
chr1	243329108	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329109	.	G	.	.	LowGQX	.	GT	./.
chr1	243329110	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329111	.	T	.	.	LowGQX	.	GT	./.
chr1	243329112	.	T	.	.	LowGQX	END=243329114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329115	.	T	.	.	LowGQX	.	GT	./.
chr1	243329116	.	T	.	.	LowGQX	END=243329126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329127	.	G	.	.	LowGQX	.	GT	./.
chr1	243329128	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	243329129	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	243329130	.	T	.	.	LowGQX	END=243329137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	243329138	.	C	.	.	LowGQX	.	GT	./.
chr1	243329139	.	T	.	.	LowGQX	END=243329141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	243329142	.	C	.	.	LowGQX	END=243329143	GT	./.
chr1	243329144	.	A	.	.	LowGQX	END=243329151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329152	.	C	.	.	LowGQX	.	GT	./.
chr1	243329153	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329154	.	C	.	.	LowGQX	.	GT	./.
chr1	243329155	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329156	.	G	.	.	LowGQX	.	GT	./.
chr1	243329157	.	T	.	.	LowGQX	END=243329158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329159	.	C	.	.	LowGQX	END=243329160	GT	./.
chr1	243329161	.	T	.	.	LowGQX	END=243329167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329168	.	C	.	.	LowGQX	.	GT	./.
chr1	243329169	.	A	.	.	LowGQX	END=243329172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329173	.	G	.	.	LowGQX	.	GT	./.
chr1	243329174	.	T	.	.	LowGQX	END=243329181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329182	.	C	.	.	LowGQX	END=243329183	GT	./.
chr1	243329184	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329185	.	C	.	.	LowGQX	.	GT	./.
chr1	243329186	.	T	.	.	LowGQX	END=243329192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329193	.	T	.	.	LowGQX	END=243329194	GT	./.
chr1	243329195	.	T	.	.	LowGQX	END=243329199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329200	.	G	.	.	LowGQX	.	GT	./.
chr1	243329201	.	G	.	.	LowGQX	END=243329202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329203	.	A	.	.	LowGQX	.	GT	./.
chr1	243329204	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329205	.	A	.	.	LowGQX	.	GT	./.
chr1	243329206	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329207	.	C	.	.	LowGQX	END=243329209	GT	./.
chr1	243329210	.	T	.	.	LowGQX	END=243329226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329227	.	C	.	.	LowGQX	.	GT	./.
chr1	243329228	.	C	.	.	LowGQX	END=243329231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329232	.	A	.	.	LowGQX	END=243329233	GT	./.
chr1	243329234	.	T	.	.	LowGQX	END=243329241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329242	.	C	.	.	LowGQX	.	GT	./.
chr1	243329243	.	T	.	.	LowGQX	END=243329263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329264	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	243329265	.	C	.	.	LowGQX	END=243329273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329274	.	A	.	.	LowGQX	.	GT	./.
chr1	243329275	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243329276	.	A	.	.	LowGQX	END=243329418	GT	./.
chr1	243332841	.	C	.	.	LowGQX	END=243333056	GT	./.
chr1	243335998	.	C	.	.	LowGQX	END=243336147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	243336148	.	C	.	.	LowGQX	.	GT	./.
chr1	243340050	.	G	.	.	LowGQX	END=243340149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	243349080	.	C	.	.	LowGQX	END=243349724	GT	./.
chr1	243354319	.	C	.	.	LowGQX	END=243354335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	243354336	.	G	.	.	LowGQX	.	GT	./.
chr1	243354337	.	T	.	.	LowGQX	END=243354376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	243354377	.	C	.	33	LowGQX	DP=2;MQ=54;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:54:3
chr1	243354378	.	T	.	.	LowGQX	END=243354423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:52
chr1	243354424	.	T	.	36.01	LowGQX	DP=3;MQ=52;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:52:6
chr1	243354425	.	C	.	.	LowGQX	END=243354457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:52
chr1	243354458	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:52
chr1	243354459	.	T	.	.	LowGQX	END=243354462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:52
chr1	243354463	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:52
chr1	243354464	.	T	.	.	LowGQX	END=243354489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:48
chr1	243354490	.	G	.	.	LowGQX	END=243354543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	243354544	.	C	.	.	LowGQX	.	GT	./.
chr1	243354545	.	T	.	.	LowGQX	END=243354571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	243354572	.	C	.	.	LowGQX	END=243354575	GT	./.
chr1	243354576	.	A	.	.	LowGQX	END=243354577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	243354578	.	A	.	.	LowGQX	.	GT	./.
chr1	243354579	.	T	.	.	LowGQX	END=243354582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	243354583	.	A	.	.	LowGQX	.	GT	./.
chr1	243354584	.	T	.	.	LowGQX	END=243354595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	243354596	.	C	.	.	LowGQX	.	GT	./.
chr1	243354597	.	A	.	.	LowGQX	END=243354624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	243354625	.	G	.	.	LowGQX	.	GT	./.
chr1	243354626	.	G	.	.	LowGQX	END=243354630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	243354631	.	T	.	.	LowGQX	.	GT	./.
chr1	243354632	.	C	.	.	LowGQX	END=243354637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	243354638	.	T	.	.	LowGQX	.	GT	./.
chr1	243354639	.	T	.	.	LowGQX	END=243354674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	243354675	.	T	.	.	LowGQX	.	GT	./.
chr1	243354676	.	G	.	.	LowGQX	END=243354685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	243354686	.	A	.	.	LowGQX	.	GT	./.
chr1	243354687	.	T	.	.	LowGQX	END=243354726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	243354727	.	A	.	.	LowGQX	END=243354796	GT	./.
chr1	243362361	.	C	.	.	LowGQX	END=243362496	GT	./.
chr1	243363768	.	A	.	.	LowGQX	END=243363769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:49
chr1	243363770	.	T	.	.	LowGQX	END=243363982	GT	./.
chr1	243364058	.	A	.	.	LowGQX	END=243364157	GT	./.
chr1	243375033	.	C	.	.	LowGQX	END=243375039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	243375040	.	T	.	.	LowGQX	.	GT	./.
chr1	243375041	.	A	.	.	LowGQX	END=243375046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	243375047	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	243375048	.	T	.	.	LowGQX	END=243375080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	243375081	.	A	.	.	LowGQX	.	GT	./.
chr1	243375082	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243375083	.	T	.	.	LowGQX	.	GT	./.
chr1	243375084	.	T	.	.	LowGQX	END=243375174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243375175	.	C	.	.	LowGQX	.	GT	./.
chr1	243375176	.	A	.	.	LowGQX	END=243375184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243375185	.	T	.	.	LowGQX	.	GT	./.
chr1	243375186	.	A	.	.	LowGQX	END=243375218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243375219	.	C	.	.	LowGQX	.	GT	./.
chr1	243375220	.	A	.	.	LowGQX	END=243375226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243375227	.	T	.	.	LowGQX	.	GT	./.
chr1	243375228	.	A	.	.	LowGQX	END=243375235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243375236	.	G	.	.	LowGQX	.	GT	./.
chr1	243375237	.	T	.	.	LowGQX	END=243375238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243375239	.	C	.	.	LowGQX	END=243375242	GT	./.
chr1	243375243	.	A	.	.	LowGQX	END=243375250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	243375251	.	C	.	.	LowGQX	.	GT	./.
chr1	243375252	.	A	.	.	LowGQX	END=243375253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	243375254	.	C	.	.	LowGQX	.	GT	./.
chr1	243375255	.	A	.	.	LowGQX	END=243375262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	243375263	.	A	.	.	LowGQX	.	GT	./.
chr1	243375264	.	A	.	.	LowGQX	END=243375266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr1	243385021	.	C	.	.	LowGQX	END=243385120	GT	./.
chr1	243388477	.	C	.	.	LowGQX	END=243388582	GT	./.
chr1	243419425	.	A	.	.	PASS	END=243419428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	243419429	.	T	A	4139.66	PASS	BaseQRankSum=0.553;DP=141;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=15.2454;MQ=60;MQ0=0;MQRankSum=0.430;QD=29.36;ReadPosRankSum=0.209;SB=-1285.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,140:141:99:4140,286,0:60:99:0.993
chr1	243419430	.	G	.	.	PASS	END=243419458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	243419459	.	G	.	.	PASS	END=243419578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	243419579	.	T	.	.	PASS	END=243419593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr1	243433356	.	T	.	.	PASS	END=243433380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr1	243433381	.	T	.	.	PASS	END=243433398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr1	243433399	.	T	.	.	PASS	END=243433416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr1	243433417	.	C	.	.	PASS	END=243433433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr1	243433434	.	T	.	.	PASS	END=243433472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	243433473	.	A	.	.	PASS	END=243433531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	243433532	.	T	.	.	PASS	END=243433552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	243433553	.	C	.	.	PASS	END=243433564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr1	243433565	.	T	.	.	PASS	END=243433578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	243433579	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:48:60
chr1	243433580	.	T	.	.	PASS	END=243433584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	243433585	.	T	.	.	PASS	END=243433593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr1	243433594	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:15:60
chr1	243433595	.	A	.	.	PASS	END=243433610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr1	243434229	.	A	.	.	PASS	END=243434232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr1	243434233	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:74:60
chr1	243434234	.	A	.	.	PASS	END=243434239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	243434240	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:63:60
chr1	243434241	.	T	.	.	PASS	END=243434268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:86:60
chr1	243434269	.	T	.	.	PASS	END=243434286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	243434287	.	G	.	.	PASS	END=243434360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	243434361	.	C	.	.	PASS	END=243434376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	243434377	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:70:60
chr1	243434378	.	T	.	.	PASS	END=243434413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	243434414	.	T	.	.	PASS	END=243434416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr1	243437794	.	C	.	.	PASS	END=243437877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	243437878	.	A	.	.	PASS	END=243438009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	243449523	.	A	.	.	PASS	END=243449542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr1	243449543	.	T	.	.	PASS	END=243449650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr1	243449651	.	T	.	.	PASS	END=243449687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	243449688	.	C	.	.	PASS	END=243449695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	243449696	.	A	.	.	PASS	END=243449749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	243449750	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:63:60
chr1	243456342	.	T	.	.	PASS	END=243456425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr1	243456426	.	G	.	.	PASS	END=243456473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr1	243456474	.	A	.	.	PASS	END=243456529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	243456530	.	T	.	.	PASS	END=243456572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	243456699	.	A	.	.	PASS	END=243456735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr1	243456736	.	T	.	.	PASS	END=243456743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr1	243456744	.	A	.	.	PASS	END=243456759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr1	243456760	.	T	.	.	PASS	END=243456768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:39:60
chr1	243456769	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	243456770	.	C	.	.	PASS	END=243456778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	243456779	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	243456780	.	C	.	.	PASS	END=243456781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	243456782	.	T	.	.	LowGQX	END=243456798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	243467964	.	A	.	.	PASS	END=243468008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	243468009	.	C	.	.	PASS	END=243468110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	243468111	.	C	.	.	PASS	END=243468125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	243468126	.	C	.	.	PASS	END=243468130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	243468314	.	A	.	.	PASS	END=243468318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr1	243468319	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	243468320	.	G	.	.	PASS	END=243468321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	243468322	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	243468323	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:18:60
chr1	243468324	.	C	.	.	PASS	END=243468331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	243468332	.	G	.	.	PASS	END=243468339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr1	243468340	.	G	.	.	PASS	END=243468342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	243468343	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	243468344	.	C	.	.	PASS	END=243468349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr1	243468350	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	243468351	.	G	.	.	PASS	END=243468354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	243468355	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr1	243468356	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr1	243468357	.	C	.	.	LowGQX	END=243468364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	243468365	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	243468366	.	T	.	.	LowGQX	END=243468373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	243468374	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	243468375	.	G	.	.	LowGQX	END=243468376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	243468377	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	243468378	.	G	.	.	LowGQX	END=243468385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	243468386	.	A	.	.	LowGQX	END=243468389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	243468390	.	C	.	.	LowGQX	END=243468394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr1	243468395	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr1	243468396	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr1	243468397	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	243468398	.	A	.	.	LowGQX	END=243468401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	243468402	.	A	.	.	LowGQX	END=243468403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	243468404	.	T	.	.	LowGQX	END=243468412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	243468413	.	C	.	.	LowGQX	END=243468414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	243468415	.	T	.	.	LowGQX	END=243468417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	243468418	.	C	.	.	LowGQX	END=243468424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	243468425	.	G	.	.	LowGQX	END=243468426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	243468427	.	T	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr1	243468428	.	G	.	.	LowGQX	END=243468432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	243468433	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	243468434	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr1	243468435	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	243468436	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	243468437	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	243468438	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	243468439	.	T	.	.	LowGQX	END=243468442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	243468443	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	243468444	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	243468445	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:3:9.03:60:9
chr1	243468446	.	A	.	.	LowGQX	END=243468456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	243468457	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	243468458	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	243468459	.	T	.	.	LowGQX	.	GT	./.
chr1	243468460	.	A	.	.	LowGQX	END=243468462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	243468463	.	T	.	.	LowGQX	.	GT	./.
chr1	243468464	.	G	.	.	LowGQX	END=243468467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	243468468	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr1	243468469	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	243468470	.	G	.	.	LowGQX	END=243468477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	243468478	.	G	.	.	LowGQX	END=243468479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	243468480	.	G	.	.	LowGQX	END=243468485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	243471240	.	T	.	.	PASS	END=243471279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	243471280	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:54:60
chr1	243471281	.	C	.	.	PASS	END=243471295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr1	243471296	.	A	.	.	PASS	END=243471316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr1	243471317	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:55:60
chr1	243471318	.	T	.	.	PASS	END=243471390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr1	243471391	.	G	.	.	PASS	END=243471462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:79:60
chr1	243471463	.	A	.	.	PASS	END=243471490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	243471491	.	T	.	.	PASS	END=243471500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	243471501	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:46:60
chr1	243471502	.	G	.	.	PASS	END=243471515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr1	243471516	.	T	.	.	PASS	END=243471530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr1	243480006	.	A	.	.	PASS	END=243480124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	243480125	.	A	.	.	PASS	END=243480154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	243480155	.	T	.	.	PASS	END=243480201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	243480202	.	C	.	.	PASS	END=243480203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:68:60
chr1	243480204	.	A	.	.	PASS	END=243480208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	243480209	.	G	.	.	PASS	END=243480224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr1	243480225	.	T	.	.	PASS	END=243480234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr1	243480235	.	T	.	.	PASS	END=243480246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	243481296	.	T	.	.	LowGQX	END=243481339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243481340	.	A	.	.	LowGQX	.	GT	./.
chr1	243481341	.	C	.	.	LowGQX	END=243481368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243481369	.	G	.	.	LowGQX	END=243481370	GT	./.
chr1	243481371	.	A	.	.	LowGQX	END=243481379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243481380	.	A	.	.	LowGQX	.	GT	./.
chr1	243481381	.	T	.	.	LowGQX	END=243481389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243481390	.	A	.	.	LowGQX	.	GT	./.
chr1	243481391	.	T	.	.	LowGQX	END=243481393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243481394	.	A	.	.	LowGQX	.	GT	./.
chr1	243481395	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	243493791	.	A	.	.	PASS	END=243493792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:60
chr1	243493793	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	243493794	.	T	.	.	PASS	END=243493826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	243493827	.	G	.	.	PASS	END=243493842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr1	243493843	.	C	.	.	PASS	END=243493856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr1	243493857	.	G	.	.	PASS	END=243493861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr1	243493862	.	G	.	.	PASS	END=243493919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr1	243493920	.	C	.	.	PASS	END=243493993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	243493994	.	G	.	.	PASS	END=243494006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr1	243494007	.	T	.	.	PASS	END=243494016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr1	243494017	.	T	.	.	PASS	END=243494022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr1	243494023	.	T	.	.	PASS	END=243494029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr1	243494030	.	A	.	.	PASS	END=243494045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr1	243504290	.	T	.	.	PASS	END=243504404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	243504405	.	A	.	.	PASS	END=243504526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr1	243507466	.	T	.	.	PASS	END=243507494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr1	243507495	.	C	.	.	PASS	END=243507533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	243507534	.	C	.	.	PASS	END=243507647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	243507648	.	A	.	.	PASS	END=243507672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr1	243507673	.	T	.	.	PASS	END=243507684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr1	243541972	.	T	.	.	PASS	END=243541983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	243541984	.	A	.	.	PASS	END=243542009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	243542010	.	C	.	.	PASS	END=243542023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	243542024	.	A	.	.	PASS	END=243542038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	243542039	.	G	.	.	PASS	END=243542086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	243542087	.	A	.	.	PASS	END=243542195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	243542196	.	A	.	.	PASS	END=243542216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	243578953	.	G	.	.	PASS	END=243579030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	243579031	.	C	.	.	PASS	END=243579083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	243579084	.	A	.	.	PASS	END=243579111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	243579112	.	G	A	2191.16	PASS	DP=76;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=7.5754;MQ=60;MQ0=0;QD=28.83;SB=-736.04	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,75:76:99:2224,169,0:60:99:1.000
chr1	243579113	.	G	.	.	PASS	END=243579156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	243579157	.	C	.	.	PASS	END=243579178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	243579179	.	G	.	.	PASS	END=243579182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	243581219	.	A	.	.	PASS	END=243581260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	243581261	.	T	.	.	PASS	END=243581344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr1	243581345	.	C	.	.	PASS	END=243581352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	243581353	.	C	.	.	PASS	END=243581384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	243581385	.	G	.	.	PASS	END=243581397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:96:60
chr1	243581398	.	A	.	.	PASS	END=243581419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	243581420	.	T	.	.	PASS	END=243581429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr1	243589678	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:33:60
chr1	243589679	.	C	.	.	PASS	END=243589685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr1	243589686	.	T	.	.	PASS	END=243589701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	243589702	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:75:60
chr1	243589703	.	T	.	.	PASS	END=243589750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr1	243589751	.	C	.	.	PASS	END=243589836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	243589837	.	A	.	.	PASS	END=243589855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	243589856	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:57:60
chr1	243589857	.	A	.	.	PASS	END=243589883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	243589884	.	C	.	.	PASS	END=243589896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	243589897	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:48:60
chr1	243589898	.	T	.	.	PASS	END=243589911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr1	243652265	.	T	.	.	PASS	END=243652317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	243652318	.	T	.	.	PASS	END=243652394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	243652395	.	C	.	.	PASS	END=243652425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	243652426	.	A	.	.	PASS	END=243652446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	243652447	.	T	.	.	PASS	END=243652456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	243652457	.	G	.	.	PASS	END=243652480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	243652481	.	C	.	.	PASS	END=243652487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr1	243652488	.	C	.	.	PASS	END=243652493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr1	243663001	.	A	.	.	PASS	END=243663142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr1	243668544	.	A	.	.	PASS	END=243668616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	243668617	.	G	.	.	PASS	END=243668625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	243668626	.	A	.	.	PASS	END=243668629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	243668630	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:70:60
chr1	243668631	.	C	.	.	PASS	END=243668643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr1	243675624	.	A	.	.	PASS	END=243675643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	243675644	.	T	.	.	PASS	END=243675679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	243675680	.	A	.	.	PASS	END=243675718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	243675719	.	G	.	.	PASS	END=243675783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr1	243708806	.	T	.	.	PASS	END=243708856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr1	243708857	.	G	.	.	PASS	END=243708905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr1	243715994	.	T	.	.	PASS	END=243716012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	243716013	.	G	.	.	PASS	END=243716051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	243716052	.	A	.	.	PASS	END=243716182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	243716183	.	A	.	.	PASS	END=243716202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr1	243716203	.	C	.	.	PASS	END=243716218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	243716219	.	T	.	.	PASS	END=243716247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	243727020	.	A	.	.	PASS	END=243727023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	243727024	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:69:60
chr1	243727025	.	T	.	.	PASS	END=243727029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	243727030	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr1	243727031	.	C	.	.	PASS	END=243727046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	243727047	.	C	.	.	PASS	END=243727073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	243727074	.	T	.	.	PASS	END=243727151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	243727152	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:99:60
chr1	243736226	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:75:61
chr1	243736227	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:37:24:61
chr1	243736228	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:51:61
chr1	243736229	.	T	.	.	PASS	END=243736238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:60:61
chr1	243736239	.	G	.	.	PASS	END=243736245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:69:61
chr1	243736246	.	A	.	.	PASS	END=243736248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:61
chr1	243736249	.	C	.	.	PASS	END=243736250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:69:61
chr1	243736251	.	T	.	.	PASS	END=243736256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:75:61
chr1	243736257	.	A	.	.	PASS	END=243736274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:78:60
chr1	243736275	.	C	.	.	PASS	END=243736352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	243776958	.	T	.	.	PASS	END=243776980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	243776981	.	C	.	.	PASS	END=243777049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	243777050	.	A	.	.	PASS	END=243777057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr1	243778326	.	A	.	.	PASS	END=243778361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	243778362	.	T	.	.	PASS	END=243778369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:69:60
chr1	243778370	.	T	.	.	PASS	END=243778390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr1	243778391	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:57:60
chr1	243778392	.	A	.	.	PASS	END=243778421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr1	243778422	.	C	.	.	PASS	END=243778480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr1	243800911	.	A	.	.	PASS	END=243800963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr1	243800964	.	A	.	.	PASS	END=243801010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr1	243801011	.	C	.	.	PASS	END=243801046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	243809193	.	A	.	.	PASS	END=243809325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr1	243809326	.	C	.	.	PASS	END=243809341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr1	243828022	.	C	.	.	PASS	END=243828122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	243828123	.	A	.	.	PASS	END=243828171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	243828172	.	C	.	.	PASS	END=243828187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	243858891	.	A	.	.	PASS	END=243858925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	243858926	.	A	.	.	PASS	END=243859020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr1	244006390	.	T	.	.	PASS	END=244006423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:78:60
chr1	244006424	.	T	.	.	PASS	END=244006430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	244006431	.	C	.	.	PASS	END=244006481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr1	244006482	.	C	.	.	PASS	END=244006489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	244214691	.	C	.	.	PASS	END=244214712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr1	244214713	.	G	.	.	PASS	END=244214770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr1	244214771	.	G	.	.	PASS	END=244214790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr1	244217088	.	A	.	.	LowGQX	END=244217121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr1	244217122	.	A	.	.	LowGQX	END=244217137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	244217138	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	244217139	.	G	.	.	LowGQX	END=244217141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	244217142	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	244217143	.	C	.	.	LowGQX	END=244217145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	244217146	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	244217147	.	G	.	.	LowGQX	END=244217156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	244217157	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	244217158	.	C	.	.	LowGQX	END=244217175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	244217176	.	G	.	.	LowGQX	END=244217194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	244217195	.	G	.	.	LowGQX	END=244217197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	244217198	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr1	244217199	.	T	.	.	LowGQX	END=244217204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	244217205	.	G	.	.	LowGQX	END=244217220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	244217221	.	G	.	.	LowGQX	END=244217284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	244217285	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	244217286	.	C	.	.	LowGQX	END=244217295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	244217296	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr1	244217297	.	T	.	.	LowGQX	END=244217320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	244217321	.	C	.	.	LowGQX	END=244217324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	244217325	.	T	.	.	LowGQX	END=244217326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	244217327	.	T	.	.	LowGQX	END=244217345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	244217346	.	C	.	.	LowGQX	END=244217347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	244217348	.	T	.	.	LowGQX	END=244217349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	244217350	.	T	.	.	LowGQX	END=244217359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	244217360	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	244217361	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:12:60
chr1	244217362	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr1	244217363	.	T	.	.	LowGQX	END=244217367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	244217368	.	T	.	.	LowGQX	END=244217371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	244217372	.	A	.	.	LowGQX	END=244217374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	244217375	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr1	244217376	.	C	.	.	LowGQX	END=244217381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	244217382	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	244217383	.	A	.	.	LowGQX	END=244217404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	244217405	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	244217406	.	C	.	.	LowGQX	END=244217440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	244217441	.	G	.	.	LowGQX	END=244217461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	244217462	.	A	.	.	LowGQX	END=244217477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	244217478	.	A	.	.	LowGQX	END=244217499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	244217500	.	G	.	.	LowGQX	END=244217506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	244217507	.	C	.	.	LowGQX	END=244217510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	244217511	.	T	.	.	LowGQX	END=244217516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr1	244217517	.	G	.	.	LowGQX	END=244217521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	244217522	.	A	.	.	LowGQX	END=244217524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	244217525	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	244217526	.	C	.	.	LowGQX	END=244217530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	244217531	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr1	244217532	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr1	244217533	.	C	.	.	LowGQX	END=244217544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	244217545	.	A	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	244217546	.	G	.	.	LowGQX	END=244217561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	244217562	.	C	.	.	LowGQX	END=244217564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	244217565	.	T	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	244217566	.	T	.	.	LowGQX	END=244217576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	244217577	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	244217578	.	G	.	.	LowGQX	END=244217582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	244217583	.	T	.	.	LowGQX	END=244217586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	244217587	.	G	.	.	LowGQX	END=244217592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	244217593	.	G	.	.	LowGQX	END=244217595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	244217596	.	G	.	.	LowGQX	END=244217625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	244217626	.	G	.	.	LowGQX	END=244217650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	244217651	.	T	.	.	LowGQX	END=244217658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	244217659	.	C	.	.	LowGQX	END=244217675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	244217676	.	A	.	.	LowGQX	END=244217678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	244217679	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr1	244217680	.	G	.	.	LowGQX	END=244217685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr1	244217686	.	C	.	.	LowGQX	END=244217690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	244217691	.	G	.	.	LowGQX	END=244217701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	244217702	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	244217703	.	G	.	.	LowGQX	END=244217705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	244217706	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	244217707	.	G	.	.	LowGQX	END=244217711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	244217712	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	244217713	.	C	.	.	LowGQX	END=244217717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	244217718	.	C	.	.	LowGQX	END=244217752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	244217753	.	G	.	.	LowGQX	END=244217757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	244217758	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr1	244217759	.	C	.	.	LowGQX	END=244217763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	244217764	.	T	.	.	LowGQX	END=244217779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	244217780	.	C	.	.	LowGQX	END=244217789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	244217790	.	C	.	.	LowGQX	END=244217792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	244217793	.	G	.	.	LowGQX	END=244217795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	244217796	.	G	.	.	LowGQX	END=244217797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	244217798	.	A	.	.	LowGQX	END=244217799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	244217800	.	T	.	.	LowGQX	END=244217803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	244217804	.	C	.	.	LowGQX	END=244217805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr1	244217806	.	G	.	.	LowGQX	END=244217818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	244217819	.	T	.	.	LowGQX	END=244217821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	244217822	.	T	.	.	LowGQX	END=244217824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	244217825	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	244217826	.	C	.	.	LowGQX	END=244217829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	244217830	.	T	.	.	LowGQX	END=244217831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	244217832	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	244217833	.	G	.	.	LowGQX	END=244217840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	244217841	.	C	.	.	LowGQX	END=244217853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	244217854	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	244217855	.	T	.	.	LowGQX	END=244217856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	244217857	.	G	.	.	LowGQX	END=244217860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	244217861	.	A	.	.	LowGQX	END=244217862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	244217863	.	C	.	.	LowGQX	END=244217865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr1	244217866	.	A	.	.	LowGQX	END=244217867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	244217868	.	C	.	.	LowGQX	END=244217879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	244217880	.	C	.	.	PASS	END=244217881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	244217882	.	C	.	.	LowGQX	END=244217884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	244217885	.	C	.	.	LowGQX	END=244217886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:27:60
chr1	244217887	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chr1	244217888	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	244217889	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	244217890	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	244217891	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chr1	244217892	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	244217893	.	G	.	.	PASS	END=244217894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	244217895	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:21:60
chr1	244217896	.	C	.	.	PASS	END=244217899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	244217900	.	G	.	.	LowGQX	END=244217901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:60
chr1	244217902	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	244217903	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	244217904	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	244217905	.	A	.	.	LowGQX	END=244217909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	244217910	.	G	.	.	PASS	END=244217911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	244217912	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	244217913	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr1	244217914	.	C	.	.	LowGQX	END=244217926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	244217927	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	244217928	.	G	.	.	LowGQX	END=244217931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:27:60
chr1	244217932	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr1	244217933	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:60
chr1	244217934	.	G	.	.	PASS	END=244217936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	244217937	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	244217938	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr1	244217939	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:24:60
chr1	244217940	.	C	.	.	PASS	END=244217942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr1	244217943	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr1	244217944	.	G	.	.	PASS	END=244217948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	244217949	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	244217950	.	A	.	.	PASS	END=244217952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	244217953	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr1	244217954	.	A	.	.	PASS	END=244217956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	244217957	.	T	.	.	LowGQX	END=244217962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	244217963	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	244217964	.	T	.	.	LowGQX	END=244217971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	244217972	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:18:60
chr1	244217973	.	T	.	.	PASS	END=244217974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	244217975	.	A	.	.	LowGQX	END=244217977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:60
chr1	244217978	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	244217979	.	G	.	.	LowGQX	END=244217980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr1	244217981	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	244217982	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	244217983	.	C	.	.	PASS	END=244217984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	244217985	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	244217986	.	A	.	.	PASS	END=244217988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	244217989	.	A	.	.	LowGQX	END=244217990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr1	244217991	.	T	.	.	PASS	END=244217999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	244218000	.	A	.	.	LowGQX	END=244218001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr1	244218002	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr1	244218003	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr1	244218004	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:60
chr1	244218005	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr1	244218006	.	G	.	.	PASS	END=244218008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	244218009	.	C	.	.	LowGQX	END=244218012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:60
chr1	244218013	.	A	.	.	PASS	END=244218014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	244218015	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	244218016	.	A	.	.	PASS	END=244218020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	244218021	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	244218022	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr1	244218023	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	244218024	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	244218025	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr1	244218026	.	A	.	.	PASS	END=244218027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	244218028	.	T	.	.	LowGQX	END=244218030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	244218031	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	244218032	.	A	.	.	LowGQX	END=244218033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr1	244218034	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	244218035	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:21:60
chr1	244218036	.	G	.	.	LowGQX	END=244218038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	244218039	.	C	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	244218040	.	C	.	.	LowGQX	END=244218041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	244218042	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr1	244218043	.	C	.	.	LowGQX	END=244218049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	244218050	.	C	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	244218051	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	244218052	.	C	.	.	LowGQX	END=244218053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	244218054	.	G	.	.	LowGQX	END=244218059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	244218060	.	G	.	.	LowGQX	END=244218063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	244218064	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	244218065	.	C	.	.	LowGQX	END=244218067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	244218068	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	244218069	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr1	244218070	.	T	.	.	LowGQX	END=244218071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	244218072	.	G	.	.	LowGQX	END=244218076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	244218077	.	A	.	.	LowGQX	END=244218092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	244218093	.	C	.	.	LowGQX	END=244218109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	244218110	.	A	.	.	LowGQX	END=244218174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	244218175	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	244218176	.	A	.	.	LowGQX	END=244218192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	244218193	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	244218194	.	G	.	.	LowGQX	END=244218218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	244218219	.	C	.	.	LowGQX	END=244218225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	244218226	.	T	.	.	LowGQX	.	GT	./.
chr1	244218227	.	G	.	.	LowGQX	END=244218228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	244218229	.	A	.	5.68	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr1	244218230	.	A	.	.	LowGQX	.	GT	./.
chr1	244218231	.	C	.	.	LowGQX	END=244218237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	244218238	.	T	.	.	LowGQX	.	GT	./.
chr1	244218239	.	T	.	.	LowGQX	END=244218243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	244218244	.	A	.	.	LowGQX	.	GT	./.
chr1	244218245	.	G	.	.	LowGQX	END=244218248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	244218249	.	C	.	.	LowGQX	.	GT	./.
chr1	244218250	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	244218251	.	A	.	.	LowGQX	.	GT	./.
chr1	244218252	.	C	.	.	LowGQX	END=244218261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244218262	.	A	.	.	LowGQX	END=244218263	GT	./.
chr1	244218264	.	C	.	.	LowGQX	END=244218265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244218266	.	A	.	.	LowGQX	.	GT	./.
chr1	244218267	.	C	.	.	LowGQX	END=244218272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244218273	.	C	.	.	LowGQX	END=244218274	GT	./.
chr1	244218275	.	C	.	.	LowGQX	END=244218277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244218278	.	A	.	.	LowGQX	.	GT	./.
chr1	244218279	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244218280	.	T	.	.	LowGQX	.	GT	./.
chr1	244218281	.	T	.	.	LowGQX	END=244218285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244218286	.	G	.	.	LowGQX	END=244218290	GT	./.
chr1	244218291	.	G	.	.	LowGQX	END=244218312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244218313	.	G	.	.	LowGQX	.	GT	./.
chr1	244218314	.	C	.	.	LowGQX	END=244218344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244218345	.	G	.	.	LowGQX	END=244218361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	244218362	.	C	.	.	LowGQX	END=244218380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	244218381	.	G	.	.	LowGQX	END=244218392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	244218393	.	G	.	.	LowGQX	END=244218402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr1	244218403	.	G	.	.	LowGQX	END=244218418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr1	244218419	.	C	.	.	PASS	END=244218423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	244218424	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:4:60
chr1	244218425	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	244218426	.	C	.	.	PASS	END=244218429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	244218430	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	244218431	.	G	.	.	PASS	END=244218434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	244218435	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	244218436	.	A	.	.	PASS	END=244218442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	244218443	.	T	.	.	PASS	END=244218477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	244218478	.	G	.	.	PASS	END=244218533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	244218534	.	G	.	.	PASS	END=244218554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	244218555	.	C	.	.	PASS	END=244218560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr1	244218561	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:3:60
chr1	244218562	.	A	.	.	PASS	END=244218583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	244218584	.	A	.	.	PASS	END=244218587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr1	244218588	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:6:60
chr1	244218589	.	T	.	.	PASS	END=244218594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr1	244218595	.	G	.	.	PASS	END=244218674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr1	244527981	.	T	.	.	LowGQX	END=244528052	GT	./.
chr1	244528053	.	G	.	.	LowGQX	END=244528080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	244538672	.	A	.	.	LowGQX	END=244538771	GT	./.
chr1	244541767	.	A	.	.	LowGQX	END=244541880	GT	./.
chr1	244541881	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244541882	.	A	.	.	LowGQX	.	GT	./.
chr1	244541883	.	G	.	.	LowGQX	END=244541896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244541897	.	A	.	.	LowGQX	.	GT	./.
chr1	244541898	.	A	.	.	LowGQX	END=244541908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244541909	.	G	.	.	LowGQX	.	GT	./.
chr1	244541910	.	A	.	.	LowGQX	END=244541911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244541912	.	G	.	.	LowGQX	END=244541913	GT	./.
chr1	244541914	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244541915	.	A	.	.	LowGQX	.	GT	./.
chr1	244541916	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244541917	.	T	.	.	LowGQX	.	GT	./.
chr1	244541918	.	A	.	.	LowGQX	END=244541930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244541931	.	T	.	.	LowGQX	END=244541932	GT	./.
chr1	244541933	.	A	.	.	LowGQX	END=244541936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244541937	.	G	.	.	LowGQX	.	GT	./.
chr1	244541938	.	A	.	.	LowGQX	END=244541943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244552251	.	A	.	.	LowGQX	END=244552260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	244552261	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	244552262	.	A	.	.	LowGQX	END=244552275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	244552276	.	G	.	.	LowGQX	.	GT	./.
chr1	244552277	.	T	.	.	LowGQX	END=244552293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244552294	.	C	.	.	LowGQX	.	GT	./.
chr1	244552295	.	C	.	.	LowGQX	END=244552302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244552303	.	T	.	.	LowGQX	END=244552304	GT	./.
chr1	244552305	.	A	.	.	LowGQX	END=244552322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244552323	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	244552324	.	T	.	.	LowGQX	END=244552327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	244552328	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	244552329	.	A	.	.	LowGQX	END=244552331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244552332	.	G	.	.	LowGQX	END=244552334	GT	./.
chr1	244552335	.	A	.	.	LowGQX	END=244552336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244552337	.	G	.	.	LowGQX	END=244552342	GT	./.
chr1	244552343	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244552344	.	T	.	.	LowGQX	.	GT	./.
chr1	244552345	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244552346	.	A	.	.	LowGQX	.	GT	./.
chr1	244552347	.	A	.	.	LowGQX	END=244552351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244552352	.	A	.	.	LowGQX	.	GT	./.
chr1	244552353	.	T	.	.	LowGQX	END=244552356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244552357	.	T	.	.	LowGQX	.	GT	./.
chr1	244552358	.	T	.	.	LowGQX	END=244552362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244552363	.	C	.	.	LowGQX	END=244552365	GT	./.
chr1	244552366	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244552367	.	A	.	.	LowGQX	.	GT	./.
chr1	244552368	.	A	.	.	LowGQX	END=244552369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244552370	.	A	.	.	LowGQX	.	GT	./.
chr1	244552371	.	A	.	.	LowGQX	END=244552372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244552373	.	C	.	.	LowGQX	.	GT	./.
chr1	244572865	.	G	.	.	LowGQX	END=244572964	GT	./.
chr1	244574587	.	A	.	.	LowGQX	END=244574740	GT	./.
chr1	244579281	.	A	.	.	LowGQX	END=244579382	GT	./.
chr1	244580928	.	A	.	.	LowGQX	END=244580946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244580947	.	C	.	.	LowGQX	END=244581056	GT	./.
chr1	244582060	.	A	.	.	LowGQX	END=244582218	GT	./.
chr1	244583470	.	A	.	.	LowGQX	END=244583505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244583506	.	T	.	.	LowGQX	.	GT	./.
chr1	244583507	.	T	.	.	LowGQX	END=244583509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244583510	.	A	.	.	LowGQX	.	GT	./.
chr1	244583511	.	C	.	.	LowGQX	END=244583520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244583521	.	C	.	.	LowGQX	.	GT	./.
chr1	244583522	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244583523	.	T	.	.	LowGQX	END=244583524	GT	./.
chr1	244583525	.	G	.	.	LowGQX	END=244583526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244583527	.	T	.	.	LowGQX	.	GT	./.
chr1	244583528	.	G	.	.	LowGQX	END=244583536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244583537	.	A	.	.	LowGQX	END=244583539	GT	./.
chr1	244583540	.	G	.	.	LowGQX	END=244583542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244583543	.	T	.	.	LowGQX	.	GT	./.
chr1	244583544	.	C	.	.	LowGQX	END=244583554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244583555	.	T	.	.	LowGQX	.	GT	./.
chr1	244583556	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244583557	.	A	.	.	LowGQX	.	GT	./.
chr1	244583558	.	A	.	.	LowGQX	END=244583561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244583562	.	C	.	.	LowGQX	END=244583563	GT	./.
chr1	244583564	.	T	.	.	LowGQX	END=244583566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244583567	.	C	.	.	LowGQX	.	GT	./.
chr1	244583568	.	T	.	.	LowGQX	END=244583569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244583570	.	A	.	.	LowGQX	.	GT	./.
chr1	244583571	.	C	.	.	LowGQX	END=244583573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244583574	.	T	.	.	LowGQX	.	GT	./.
chr1	244583575	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244583576	.	G	.	.	LowGQX	END=244583578	GT	./.
chr1	244583579	.	T	.	.	LowGQX	END=244583585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244583586	.	T	.	.	LowGQX	.	GT	./.
chr1	244583587	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244583588	.	T	.	.	LowGQX	END=244583590	GT	./.
chr1	244583591	.	A	.	.	LowGQX	END=244583593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244583594	.	T	.	.	LowGQX	.	GT	./.
chr1	244583595	.	A	.	.	LowGQX	END=244583597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244583598	.	C	.	.	LowGQX	.	GT	./.
chr1	244583599	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244583600	.	T	.	.	LowGQX	.	GT	./.
chr1	244586128	.	A	.	.	LowGQX	END=244586137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244586138	.	T	.	.	LowGQX	.	GT	./.
chr1	244586139	.	T	.	.	LowGQX	END=244586141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244586142	.	G	.	.	LowGQX	.	GT	./.
chr1	244586143	.	T	.	.	LowGQX	END=244586153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244586154	.	C	.	.	LowGQX	END=244586155	GT	./.
chr1	244586156	.	C	.	.	LowGQX	END=244586159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244586160	.	C	.	.	LowGQX	.	GT	./.
chr1	244586161	.	A	.	.	LowGQX	END=244586165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244586166	.	C	.	.	LowGQX	.	GT	./.
chr1	244586167	.	T	.	.	LowGQX	END=244586227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244587253	.	A	.	.	LowGQX	END=244587287	GT	./.
chr1	244587288	.	T	.	.	LowGQX	END=244587302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244587303	.	C	.	.	LowGQX	.	GT	./.
chr1	244587304	.	C	.	.	LowGQX	END=244587308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244587309	.	C	.	.	LowGQX	.	GT	./.
chr1	244587310	.	G	.	.	LowGQX	END=244587331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244587332	.	T	.	.	LowGQX	.	GT	./.
chr1	244587333	.	G	.	.	LowGQX	END=244587364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244587607	.	A	.	.	LowGQX	END=244587706	GT	./.
chr1	244595823	.	A	.	.	LowGQX	END=244595974	GT	./.
chr1	244600112	.	C	.	.	LowGQX	END=244600131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244600132	.	C	.	.	LowGQX	.	GT	./.
chr1	244600133	.	C	.	.	LowGQX	END=244600153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244600154	.	C	.	.	LowGQX	.	GT	./.
chr1	244600155	.	T	.	.	LowGQX	END=244600204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244600205	.	A	.	.	LowGQX	.	GT	./.
chr1	244600206	.	A	.	.	LowGQX	END=244600211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244600966	.	A	.	.	LowGQX	END=244601072	GT	./.
chr1	244614935	.	A	.	.	LowGQX	END=244615121	GT	./.
chr1	244624633	.	C	.	.	LowGQX	END=244624798	GT	./.
chr1	244627185	.	T	.	.	LowGQX	END=244627284	GT	./.
chr1	244640830	.	T	.	.	LowGQX	END=244640884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244640885	.	G	.	.	LowGQX	END=244640929	GT	./.
chr1	244641193	.	C	.	.	LowGQX	END=244641292	GT	./.
chr1	244643003	.	T	.	.	LowGQX	END=244643102	GT	./.
chr1	244653712	.	C	.	.	LowGQX	END=244653811	GT	./.
chr1	244662293	.	T	.	.	LowGQX	END=244662392	GT	./.
chr1	244681838	.	T	.	.	LowGQX	END=244681924	GT	./.
chr1	244681925	.	C	.	.	LowGQX	END=244681997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244681998	.	G	.	.	LowGQX	.	GT	./.
chr1	244681999	.	G	.	.	LowGQX	END=244682000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244682001	.	G	.	.	LowGQX	.	GT	./.
chr1	244682002	.	T	.	.	LowGQX	END=244682022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244682023	.	A	.	.	LowGQX	.	GT	./.
chr1	244682024	.	A	.	.	LowGQX	END=244682051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244715622	.	A	.	.	LowGQX	END=244716118	GT	./.
chr1	244723968	.	A	.	.	LowGQX	END=244724449	GT	./.
chr1	244735630	.	A	.	.	LowGQX	END=244735956	GT	./.
chr1	244735957	.	C	.	.	LowGQX	END=244736037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244736038	.	C	.	.	LowGQX	.	GT	./.
chr1	244736039	.	T	.	.	LowGQX	END=244736051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244736052	.	T	.	.	LowGQX	.	GT	./.
chr1	244736053	.	T	.	.	LowGQX	END=244736068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244736069	.	A	.	.	LowGQX	.	GT	./.
chr1	244736070	.	C	.	.	LowGQX	END=244736076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244745026	.	A	.	.	LowGQX	END=244745177	GT	./.
chr1	244747154	.	T	.	.	LowGQX	END=244747253	GT	./.
chr1	244751761	.	C	.	.	LowGQX	END=244751860	GT	./.
chr1	244754959	.	T	.	.	LowGQX	END=244755110	GT	./.
chr1	244756664	.	A	.	.	LowGQX	END=244756694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244756695	.	A	.	.	LowGQX	END=244756763	GT	./.
chr1	244756791	.	C	.	.	LowGQX	END=244756890	GT	./.
chr1	244768995	.	A	.	.	LowGQX	END=244769011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244769012	.	C	.	.	LowGQX	.	GT	./.
chr1	244769013	.	T	.	.	LowGQX	END=244769020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244769021	.	A	.	.	LowGQX	.	GT	./.
chr1	244769022	.	G	.	.	LowGQX	END=244769029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244769030	.	A	.	.	LowGQX	.	GT	./.
chr1	244769031	.	G	.	.	LowGQX	END=244769032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244769033	.	A	.	.	LowGQX	.	GT	./.
chr1	244769034	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244769035	.	A	.	.	LowGQX	.	GT	./.
chr1	244769036	.	T	.	.	LowGQX	END=244769041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244769042	.	A	.	.	LowGQX	.	GT	./.
chr1	244769043	.	G	.	.	LowGQX	END=244769048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244769049	.	G	.	.	LowGQX	.	GT	./.
chr1	244769050	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244769051	.	A	.	.	LowGQX	.	GT	./.
chr1	244769052	.	A	.	.	LowGQX	END=244769053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244769054	.	A	.	.	LowGQX	END=244769098	GT	./.
chr1	244773540	.	A	.	.	LowGQX	END=244773673	GT	./.
chr1	244773750	.	T	.	.	LowGQX	END=244773849	GT	./.
chr1	244780830	.	G	.	.	LowGQX	END=244780834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244780835	.	A	.	.	LowGQX	.	GT	./.
chr1	244780836	.	T	.	.	LowGQX	END=244780840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244780841	.	A	.	.	LowGQX	END=244781019	GT	./.
chr1	244798767	.	T	.	.	LowGQX	END=244798866	GT	./.
chr1	244803199	.	T	.	.	LowGQX	END=244803383	GT	./.
chr1	244816527	.	C	.	.	LowGQX	END=244816651	GT	./.
chr1	244816652	.	G	.	.	LowGQX	END=244816682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244816683	.	A	.	.	LowGQX	.	GT	./.
chr1	244816684	.	G	.	.	LowGQX	END=244816743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244817232	.	T	.	.	LowGQX	END=244817331	GT	./.
chr1	244849886	.	C	.	.	LowGQX	END=244849897	GT	./.
chr1	244849898	.	G	.	.	LowGQX	END=244849906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244849907	.	G	.	.	LowGQX	.	GT	./.
chr1	244849908	.	A	.	.	LowGQX	END=244849928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244849929	.	G	.	.	LowGQX	.	GT	./.
chr1	244849930	.	G	.	.	LowGQX	END=244849985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244852548	.	C	.	.	LowGQX	END=244852647	GT	./.
chr1	244855179	.	A	.	.	LowGQX	END=244855358	GT	./.
chr1	244868856	.	A	.	.	LowGQX	END=244868870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244868871	.	A	.	.	LowGQX	.	GT	./.
chr1	244868872	.	A	.	.	LowGQX	END=244868884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244868885	.	T	.	.	LowGQX	.	GT	./.
chr1	244868886	.	G	.	.	LowGQX	END=244868888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244868889	.	T	.	.	LowGQX	.	GT	./.
chr1	244868890	.	C	.	.	LowGQX	END=244868895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244868896	.	A	.	.	LowGQX	.	GT	./.
chr1	244868897	.	C	.	.	LowGQX	END=244868911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244868912	.	T	.	.	LowGQX	.	GT	./.
chr1	244868913	.	C	.	.	LowGQX	END=244869093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244998928	.	G	.	.	LowGQX	END=244999087	GT	./.
chr1	244999755	.	A	.	.	LowGQX	END=244999784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244999785	.	A	.	.	LowGQX	.	GT	./.
chr1	244999786	.	G	.	.	LowGQX	END=244999790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244999791	.	C	.	.	LowGQX	END=244999816	GT	./.
chr1	244999817	.	T	.	.	LowGQX	END=244999833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244999834	.	T	.	.	LowGQX	.	GT	./.
chr1	244999835	.	C	.	.	LowGQX	END=244999840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244999841	.	T	.	.	LowGQX	.	GT	./.
chr1	244999842	.	T	.	.	LowGQX	END=244999844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	244999845	.	T	.	.	LowGQX	.	GT	./.
chr1	244999846	.	C	.	.	LowGQX	END=244999854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245005244	.	A	.	.	LowGQX	END=245005362	GT	./.
chr1	245005479	.	T	.	.	LowGQX	END=245005578	GT	./.
chr1	245006341	.	A	.	.	LowGQX	END=245006530	GT	./.
chr1	245017660	.	G	.	.	PASS	END=245017666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	245017667	.	T	.	.	PASS	END=245017686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	245017687	.	A	.	.	PASS	END=245017691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	245017692	.	A	.	.	PASS	END=245017696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	245017697	.	C	.	.	PASS	END=245017712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	245017713	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr1	245017714	.	T	.	.	PASS	END=245017721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr1	245017722	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	245017723	.	A	.	.	PASS	END=245017739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr1	245017740	.	T	.	.	PASS	END=245017752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr1	245017753	.	C	.	.	PASS	END=245017759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr1	245017760	.	A	.	.	PASS	END=245017775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	245017776	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:45:60
chr1	245017777	.	T	.	.	PASS	END=245017795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr1	245017796	.	C	.	.	PASS	END=245017828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr1	245018261	.	A	.	.	PASS	END=245018289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	245018290	.	G	.	.	PASS	END=245018360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	245018724	.	A	.	.	PASS	END=245018741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	245018742	.	C	.	.	PASS	END=245018817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr1	245018818	.	G	.	.	PASS	END=245018884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr1	245018885	.	A	.	.	PASS	END=245018903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	245018904	.	C	.	.	PASS	END=245018912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr1	245019204	.	G	.	.	PASS	END=245019238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr1	245019239	.	A	.	.	PASS	END=245019345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	245019346	.	G	.	.	PASS	END=245019404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr1	245019405	.	T	.	.	PASS	END=245019462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	245019757	.	G	.	.	PASS	END=245019789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr1	245019790	.	G	.	.	PASS	END=245019921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr1	245019922	.	A	.	.	PASS	END=245019929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr1	245020028	.	A	.	.	PASS	END=245020108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr1	245020109	.	A	.	.	PASS	END=245020113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	245020114	.	G	.	.	PASS	END=245020127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr1	245020128	.	T	.	.	PASS	END=245020133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr1	245020134	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:67:60
chr1	245020135	.	C	.	.	PASS	END=245020143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	245020144	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr1	245020145	.	T	.	.	PASS	END=245020151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	245020152	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:63:60
chr1	245020153	.	T	.	.	PASS	END=245020160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	245020898	.	A	.	.	PASS	END=245020916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	245020917	.	T	.	.	PASS	END=245021019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr1	245021020	.	C	.	.	PASS	END=245021021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr1	245021311	.	A	.	.	PASS	END=245021340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr1	245021341	.	T	.	.	PASS	END=245021466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	245021467	.	T	.	.	PASS	END=245021502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr1	245021503	.	C	.	.	PASS	END=245021578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	245021979	.	G	.	.	PASS	END=245022033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	245022034	.	A	.	.	PASS	END=245022145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr1	245022575	.	A	.	.	PASS	END=245022678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	245023635	.	A	.	.	PASS	END=245023670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr1	245023671	.	C	.	.	PASS	END=245023739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	245023740	.	C	.	.	PASS	END=245023805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:96:60
chr1	245023806	.	T	.	.	PASS	END=245023809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr1	245023810	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:73:60
chr1	245023811	.	A	.	.	PASS	END=245023821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	245023822	.	A	.	.	PASS	END=245023825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr1	245025750	.	C	.	.	PASS	END=245025755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr1	245025756	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:10:60
chr1	245025757	.	A	.	.	PASS	END=245025761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr1	245025762	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:50:60
chr1	245025763	.	A	.	.	PASS	END=245025766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr1	245025767	.	A	.	.	PASS	END=245025772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr1	245025773	.	A	.	.	PASS	END=245025784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	245025785	.	G	.	.	PASS	END=245025826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr1	245025827	.	A	.	.	PASS	END=245025849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr1	245025919	.	A	.	.	PASS	END=245026028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	245026029	.	T	.	.	PASS	END=245026054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	245026917	.	A	.	.	PASS	END=245026928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	245026929	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:76:72:60
chr1	245026930	.	G	.	.	PASS	END=245026965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	245026966	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:83:3:60
chr1	245026967	.	T	.	.	PASS	END=245027001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr1	245027002	.	G	.	.	PASS	END=245027042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	245027043	.	G	.	.	PASS	END=245027084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr1	245027085	.	C	.	.	PASS	END=245027155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	245027156	.	C	.	.	PASS	END=245027292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	245027293	.	A	.	.	PASS	END=245027490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr1	245027491	.	G	.	.	PASS	END=245027613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr1	245027614	.	A	.	.	PASS	END=245027616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	245133354	.	G	.	.	LowGQX	END=245133356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245133357	.	C	.	.	LowGQX	END=245133813	GT	./.
chr1	245165422	.	G	.	.	LowGQX	END=245165534	GT	./.
chr1	245178970	.	C	.	.	LowGQX	END=245179069	GT	./.
chr1	245180537	.	T	.	.	LowGQX	END=245180636	GT	./.
chr1	245222616	.	G	.	.	LowGQX	END=245222774	GT	./.
chr1	245245375	.	G	.	.	LowGQX	END=245245474	GT	./.
chr1	245246716	.	A	.	.	LowGQX	END=245246815	GT	./.
chr1	245246872	.	G	.	.	LowGQX	END=245246879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245246880	.	T	.	.	LowGQX	.	GT	./.
chr1	245246881	.	C	.	.	LowGQX	END=245246883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245246884	.	C	.	.	LowGQX	.	GT	./.
chr1	245246885	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245246886	.	A	.	.	LowGQX	.	GT	./.
chr1	245246887	.	A	.	.	LowGQX	END=245246888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245246889	.	G	.	.	LowGQX	.	GT	./.
chr1	245246890	.	A	.	.	LowGQX	END=245246894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245246895	.	T	.	.	LowGQX	.	GT	./.
chr1	245246896	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245246897	.	T	.	.	LowGQX	.	GT	./.
chr1	245246898	.	A	.	.	LowGQX	END=245246902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245246903	.	C	.	.	LowGQX	.	GT	./.
chr1	245246904	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245246905	.	A	.	.	LowGQX	.	GT	./.
chr1	245246906	.	T	.	.	LowGQX	END=245246913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245246914	.	T	.	.	LowGQX	.	GT	./.
chr1	245246915	.	T	.	.	LowGQX	END=245246917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245246918	.	C	.	.	LowGQX	.	GT	./.
chr1	245246919	.	C	.	.	LowGQX	END=245246920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245246921	.	T	.	.	LowGQX	.	GT	./.
chr1	245246922	.	A	.	.	LowGQX	END=245246932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245246933	.	T	.	.	LowGQX	.	GT	./.
chr1	245246934	.	C	.	.	LowGQX	END=245246936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245246937	.	C	.	.	LowGQX	.	GT	./.
chr1	245246938	.	T	.	.	LowGQX	END=245246947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245246948	.	T	.	.	LowGQX	.	GT	./.
chr1	245246949	.	T	.	.	LowGQX	END=245246966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245246967	.	T	.	.	LowGQX	END=245247034	GT	./.
chr1	245250015	.	A	.	.	LowGQX	END=245250114	GT	./.
chr1	245250495	.	G	.	.	LowGQX	END=245250500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245250501	.	A	.	.	LowGQX	.	GT	./.
chr1	245250502	.	A	.	.	LowGQX	END=245250506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245250507	.	A	.	.	LowGQX	.	GT	./.
chr1	245250508	.	T	.	.	LowGQX	END=245250547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245250548	.	T	.	.	LowGQX	END=245250664	GT	./.
chr1	245285126	.	G	.	.	LowGQX	END=245285285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245318656	.	T	.	.	LowGQX	END=245318807	GT	./.
chr1	245319572	.	T	.	.	LowGQX	END=245319991	GT	./.
chr1	245530135	.	G	.	.	LowGQX	END=245530138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	245530139	.	C	.	.	LowGQX	.	GT	./.
chr1	245530140	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	245530141	.	T	.	.	LowGQX	END=245530166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	245530167	.	A	.	.	LowGQX	.	GT	./.
chr1	245530168	.	A	.	.	LowGQX	END=245530170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	245530171	.	C	.	.	LowGQX	.	GT	./.
chr1	245530172	.	C	.	.	LowGQX	END=245530184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	245530185	.	C	.	.	LowGQX	END=245530186	GT	./.
chr1	245530187	.	A	.	.	LowGQX	END=245530189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	245530190	.	C	.	.	LowGQX	.	GT	./.
chr1	245530191	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	245530192	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	245530193	.	A	.	.	LowGQX	END=245530203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	245530204	.	C	.	.	LowGQX	END=245530205	GT	./.
chr1	245530206	.	A	.	.	LowGQX	END=245530213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530214	.	A	.	.	LowGQX	END=245530308	GT	./.
chr1	245530309	.	C	.	.	LowGQX	END=245530310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530311	.	A	.	.	LowGQX	.	GT	./.
chr1	245530312	.	C	.	.	LowGQX	END=245530313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530314	.	A	.	.	LowGQX	.	GT	./.
chr1	245530315	.	C	.	.	LowGQX	END=245530322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530323	.	C	.	.	LowGQX	.	GT	./.
chr1	245530324	.	C	.	.	LowGQX	END=245530335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530336	.	A	.	.	LowGQX	.	GT	./.
chr1	245530337	.	C	.	.	LowGQX	END=245530340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530341	.	T	.	.	LowGQX	.	GT	./.
chr1	245530342	.	C	.	.	LowGQX	END=245530348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530349	.	A	.	.	LowGQX	.	GT	./.
chr1	245530350	.	T	.	.	LowGQX	END=245530356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530357	.	C	.	.	LowGQX	.	GT	./.
chr1	245530358	.	C	.	.	LowGQX	END=245530378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530379	.	G	.	.	LowGQX	.	GT	./.
chr1	245530380	.	G	.	.	LowGQX	END=245530391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530392	.	A	.	.	LowGQX	.	GT	./.
chr1	245530393	.	G	.	.	LowGQX	END=245530398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530399	.	A	.	.	LowGQX	.	GT	./.
chr1	245530400	.	G	.	.	LowGQX	END=245530408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530409	.	T	.	.	LowGQX	.	GT	./.
chr1	245530410	.	T	.	.	LowGQX	END=245530414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530415	.	C	.	.	LowGQX	.	GT	./.
chr1	245530416	.	C	.	.	LowGQX	END=245530423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530424	.	T	.	.	LowGQX	.	GT	./.
chr1	245530425	.	G	.	.	LowGQX	END=245530426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530427	.	G	.	.	LowGQX	.	GT	./.
chr1	245530428	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530429	.	C	.	.	LowGQX	.	GT	./.
chr1	245530430	.	A	.	.	LowGQX	END=245530434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530435	.	C	.	.	LowGQX	END=245530436	GT	./.
chr1	245530437	.	A	.	.	LowGQX	END=245530453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530454	.	A	.	.	LowGQX	END=245530455	GT	./.
chr1	245530456	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530457	.	A	.	.	LowGQX	.	GT	./.
chr1	245530458	.	A	.	.	LowGQX	END=245530459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530460	.	C	.	.	LowGQX	END=245530461	GT	./.
chr1	245530462	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530463	.	G	.	.	LowGQX	END=245530464	GT	./.
chr1	245530465	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	245530466	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530467	.	G	.	.	LowGQX	.	GT	./.
chr1	245530468	.	C	.	.	LowGQX	END=245530480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530481	.	C	.	.	LowGQX	.	GT	./.
chr1	245530482	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530483	.	T	.	.	LowGQX	END=245530484	GT	./.
chr1	245530485	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530486	.	G	.	.	LowGQX	.	GT	./.
chr1	245530487	.	G	.	.	LowGQX	END=245530491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530492	.	C	.	.	LowGQX	.	GT	./.
chr1	245530493	.	A	.	.	LowGQX	END=245530497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530498	.	G	.	.	LowGQX	.	GT	./.
chr1	245530499	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530500	.	C	.	.	LowGQX	.	GT	./.
chr1	245530501	.	G	.	.	LowGQX	END=245530554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530555	.	C	.	.	LowGQX	.	GT	./.
chr1	245530556	.	A	.	.	LowGQX	END=245530579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530580	.	C	.	.	LowGQX	.	GT	./.
chr1	245530581	.	T	.	.	LowGQX	END=245530584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530585	.	T	.	.	LowGQX	.	GT	./.
chr1	245530586	.	T	.	.	LowGQX	END=245530589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530590	.	T	.	.	LowGQX	.	GT	./.
chr1	245530591	.	G	.	.	LowGQX	END=245530612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245530613	.	C	.	.	LowGQX	END=245530669	GT	./.
chr1	245533873	.	T	.	.	LowGQX	END=245533972	GT	./.
chr1	245582880	.	G	.	.	LowGQX	END=245583047	GT	./.
chr1	245674369	.	A	.	.	LowGQX	END=245674468	GT	./.
chr1	245703836	.	A	.	.	LowGQX	END=245703837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245703838	.	A	.	.	LowGQX	END=245703839	GT	./.
chr1	245703840	.	T	.	.	LowGQX	END=245703854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245703855	.	G	.	.	LowGQX	.	GT	./.
chr1	245703856	.	C	.	.	LowGQX	END=245703865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245703866	.	C	.	.	LowGQX	.	GT	./.
chr1	245703867	.	C	.	.	LowGQX	END=245703879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245703880	.	A	.	.	LowGQX	.	GT	./.
chr1	245703881	.	A	.	.	LowGQX	END=245703884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245703885	.	T	.	.	LowGQX	.	GT	./.
chr1	245703886	.	T	.	.	LowGQX	END=245703895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245703896	.	G	.	.	LowGQX	.	GT	./.
chr1	245703897	.	T	.	.	LowGQX	END=245703905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245703906	.	C	.	.	LowGQX	.	GT	./.
chr1	245703907	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245703908	.	C	.	.	LowGQX	.	GT	./.
chr1	245703909	.	T	.	.	LowGQX	END=245703918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245703919	.	A	.	.	LowGQX	.	GT	./.
chr1	245703920	.	G	.	.	LowGQX	END=245703928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245703929	.	A	.	.	LowGQX	.	GT	./.
chr1	245703930	.	C	.	.	LowGQX	END=245703931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245703932	.	G	.	.	LowGQX	.	GT	./.
chr1	245703933	.	A	.	.	LowGQX	END=245703935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245703953	.	A	.	.	LowGQX	END=245703957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245703958	.	G	.	.	LowGQX	END=245704052	GT	./.
chr1	245704068	.	G	.	.	LowGQX	END=245704252	GT	./.
chr1	245765878	.	G	.	.	LowGQX	END=245766085	GT	./.
chr1	245770950	.	C	.	.	LowGQX	END=245771004	GT	./.
chr1	245771005	.	G	.	.	LowGQX	END=245771049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245772567	.	G	.	.	LowGQX	END=245772830	GT	./.
chr1	245775094	.	G	.	.	LowGQX	.	GT	./.
chr1	245775095	.	C	.	.	LowGQX	END=245775104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	245775105	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	245775106	.	G	.	.	LowGQX	END=245775167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	245775168	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	245775169	.	C	.	.	LowGQX	END=245775184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	245775185	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	245775186	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	245775187	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	245775188	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	245775189	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	245775190	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	245775191	.	T	.	.	LowGQX	END=245775241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr1	245775242	.	T	.	.	LowGQX	.	GT	./.
chr1	245775243	.	A	.	.	LowGQX	END=245775278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245809422	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245809423	.	T	.	.	LowGQX	END=245809586	GT	./.
chr1	245847534	.	G	.	.	LowGQX	END=245847598	GT	./.
chr1	245847599	.	A	.	.	LowGQX	END=245847640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245847641	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	245847642	.	T	.	.	LowGQX	END=245847653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	245847654	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	245847655	.	G	.	.	LowGQX	END=245847659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	245847660	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	245847661	.	A	.	.	LowGQX	END=245847662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	245847663	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	245847664	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	245847665	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	245847666	.	G	.	.	LowGQX	END=245847673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	245847674	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	245847675	.	G	.	.	LowGQX	END=245847697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	245848706	.	G	.	.	LowGQX	END=245848801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245848802	.	G	.	.	LowGQX	.	GT	./.
chr1	245848803	.	G	.	.	LowGQX	END=245848821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245848822	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	245848823	.	T	.	.	LowGQX	END=245848856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245848857	.	A	.	.	LowGQX	END=245850859	GT	./.
chr1	245850860	.	C	.	.	LowGQX	END=245850864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245850865	.	A	.	.	LowGQX	.	GT	./.
chr1	245850866	.	T	.	.	LowGQX	END=245850868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245850869	.	C	.	.	LowGQX	END=245850870	GT	./.
chr1	245850871	.	A	.	.	LowGQX	END=245850875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245850876	.	A	.	.	LowGQX	END=245850877	GT	./.
chr1	245850878	.	C	.	.	LowGQX	END=245850886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245850887	.	C	.	.	LowGQX	.	GT	./.
chr1	245850888	.	A	.	.	LowGQX	END=245850890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245850891	.	A	.	.	LowGQX	.	GT	./.
chr1	245850892	.	G	.	.	LowGQX	END=245850894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245850895	.	T	.	.	LowGQX	.	GT	./.
chr1	245850896	.	T	.	.	LowGQX	END=245850898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245850899	.	C	.	.	LowGQX	.	GT	./.
chr1	245850900	.	A	.	.	LowGQX	END=245850913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245850914	.	G	.	.	LowGQX	.	GT	./.
chr1	245850915	.	G	.	.	LowGQX	END=245850919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245850920	.	C	.	.	LowGQX	.	GT	./.
chr1	245850921	.	C	.	.	LowGQX	END=245850928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245850929	.	G	.	.	LowGQX	.	GT	./.
chr1	245850930	.	G	.	.	LowGQX	END=245850944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245850945	.	T	.	.	LowGQX	.	GT	./.
chr1	245850946	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245850947	.	C	.	.	LowGQX	END=245850948	GT	./.
chr1	245850949	.	A	.	.	LowGQX	END=245850965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245850966	.	A	.	.	LowGQX	.	GT	./.
chr1	245850967	.	C	.	.	LowGQX	END=245850978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245850979	.	G	.	.	LowGQX	END=245850980	GT	./.
chr1	245850981	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245850982	.	C	.	.	LowGQX	.	GT	./.
chr1	245850983	.	A	.	.	LowGQX	END=245850986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245850987	.	T	.	.	LowGQX	.	GT	./.
chr1	245850988	.	C	.	.	LowGQX	END=245850991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245850992	.	C	.	.	LowGQX	.	GT	./.
chr1	245850993	.	A	.	.	LowGQX	END=245850994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245850995	.	C	.	.	LowGQX	.	GT	./.
chr1	245850996	.	C	.	.	LowGQX	END=245850999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851000	.	C	.	.	LowGQX	.	GT	./.
chr1	245851001	.	C	.	.	LowGQX	END=245851008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851009	.	C	.	.	LowGQX	END=245851083	GT	./.
chr1	245851084	.	C	.	.	LowGQX	END=245851085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851086	.	G	.	.	LowGQX	.	GT	./.
chr1	245851087	.	T	.	.	LowGQX	END=245851089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851090	.	G	.	.	LowGQX	.	GT	./.
chr1	245851091	.	A	.	.	LowGQX	END=245851092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851093	.	A	.	.	LowGQX	.	GT	./.
chr1	245851094	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851095	.	T	.	.	LowGQX	.	GT	./.
chr1	245851096	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851097	.	C	.	.	LowGQX	END=245851099	GT	./.
chr1	245851100	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851101	.	C	.	.	LowGQX	.	GT	./.
chr1	245851102	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851103	.	G	.	.	LowGQX	.	GT	./.
chr1	245851104	.	G	.	.	LowGQX	END=245851109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851110	.	A	.	.	LowGQX	END=245851111	GT	./.
chr1	245851112	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851113	.	A	.	.	LowGQX	.	GT	./.
chr1	245851114	.	A	.	.	LowGQX	END=245851126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851127	.	T	.	.	LowGQX	.	GT	./.
chr1	245851128	.	C	.	.	LowGQX	END=245851129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851130	.	G	.	.	LowGQX	.	GT	./.
chr1	245851131	.	C	.	.	LowGQX	END=245851133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851134	.	A	.	.	LowGQX	.	GT	./.
chr1	245851135	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851136	.	T	.	.	LowGQX	.	GT	./.
chr1	245851137	.	G	.	.	LowGQX	END=245851139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851140	.	A	.	.	LowGQX	END=245851141	GT	./.
chr1	245851142	.	C	.	.	LowGQX	END=245851148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851149	.	G	.	.	LowGQX	.	GT	./.
chr1	245851150	.	G	.	.	LowGQX	END=245851167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851168	.	A	.	.	LowGQX	END=245851169	GT	./.
chr1	245851170	.	C	.	.	LowGQX	END=245851171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851172	.	A	.	.	LowGQX	.	GT	./.
chr1	245851173	.	C	.	.	LowGQX	END=245851175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851176	.	G	.	.	LowGQX	END=245851177	GT	./.
chr1	245851178	.	C	.	.	LowGQX	END=245851179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851180	.	C	.	.	LowGQX	.	GT	./.
chr1	245851181	.	C	.	.	LowGQX	END=245851182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851183	.	T	.	.	LowGQX	.	GT	./.
chr1	245851184	.	C	.	.	LowGQX	END=245851198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851199	.	A	.	.	LowGQX	.	GT	./.
chr1	245851200	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851201	.	A	.	.	LowGQX	.	GT	./.
chr1	245851202	.	C	.	.	LowGQX	END=245851234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	245851235	.	C	.	.	LowGQX	END=245852057	GT	./.
chr1	245852058	.	G	.	.	LowGQX	END=245852109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	245861407	.	G	.	.	LowGQX	END=245861610	GT	./.
chr1	245862188	.	G	.	.	LowGQX	END=245862339	GT	./.
chr1	245865759	.	G	.	.	LowGQX	END=245865908	GT	./.
chr1	245912863	.	C	.	.	PASS	END=245912926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr1	245912927	.	T	.	.	PASS	END=245912945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr1	245912946	.	C	.	.	PASS	END=245912968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr1	245927341	.	A	.	.	PASS	END=245927401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr1	245927402	.	C	.	.	PASS	END=245927453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr1	246021796	.	G	.	.	PASS	END=246021812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	246021813	.	G	.	.	PASS	END=246021834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr1	246021835	.	C	.	.	PASS	END=246021961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr1	246021962	.	C	.	.	PASS	END=246021974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	246027095	.	G	.	.	PASS	END=246027178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	246027179	.	T	.	.	PASS	END=246027194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	246078830	.	A	.	.	PASS	END=246078944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr1	246091175	.	A	.	.	PASS	END=246091211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr1	246091212	.	G	.	.	PASS	END=246091232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr1	246091233	.	C	.	.	PASS	END=246091257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr1	246091258	.	A	.	.	PASS	END=246091278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr1	246091279	.	G	.	.	PASS	END=246091337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr1	246093156	.	G	.	.	PASS	END=246093163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr1	246093164	.	C	.	.	PASS	END=246093177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr1	246093178	.	T	.	.	PASS	END=246093255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr1	246093350	.	T	.	.	PASS	END=246093357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:75:60
chr1	246093358	.	A	.	.	PASS	END=246093373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr1	246093374	.	G	.	.	PASS	END=246093378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr1	246093379	.	T	.	.	PASS	END=246093386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr1	246093387	.	T	.	.	PASS	END=246093392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr1	246093393	.	C	.	.	LowGQX	END=246093398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	246093399	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	246093400	.	T	.	.	LowGQX	END=246093413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr1	246093414	.	T	.	.	LowGQX	END=246093415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	246093416	.	C	.	.	LowGQX	END=246093418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	246093419	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	246093420	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	246093421	.	A	.	.	LowGQX	END=246093424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	246093425	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	246093426	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr1	246093427	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr1	246093428	.	T	.	.	LowGQX	END=246093429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	246093430	.	A	.	42.03	LowGQX	DP=8;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:8:12.04:60:12
chr1	246093431	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr1	246093432	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr1	246093433	.	T	.	.	LowGQX	END=246093434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	246093435	.	G	.	.	LowGQX	END=246093438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	246093439	.	A	.	.	LowGQX	END=246093444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr1	246093445	.	G	.	39.02	LowGQX	DP=8;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:8:9.03:60:9
chr1	246093446	.	A	.	.	LowGQX	END=246093448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	246093449	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr1	246110652	.	G	.	.	LowGQX	END=246110703	GT	./.
chr1	246110704	.	C	.	.	LowGQX	END=246110751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246489639	.	G	.	.	LowGQX	END=246489738	GT	./.
chr1	246490451	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:93:60
chr1	246490452	.	G	A	1153.24	PASS	DP=34;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=33.92;SB=-111.58	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,34:34:90.29:1186,90,0:60:90:1.000
chr1	246490453	.	G	.	.	PASS	END=246490455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr1	246490456	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:54:60
chr1	246490457	.	A	.	.	PASS	END=246490516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr1	246490517	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:45:60
chr1	246490518	.	A	.	.	PASS	END=246490525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr1	246490526	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:36:60
chr1	246490527	.	A	.	.	PASS	END=246490550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	246490551	.	A	.	.	PASS	END=246490553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr1	246490554	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:72:60
chr1	246490555	.	T	.	.	PASS	END=246490589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr1	246490590	.	T	.	.	PASS	END=246490641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr1	246493761	.	T	.	.	PASS	END=246493836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr1	246493837	.	C	.	.	PASS	END=246493860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	246498667	.	A	.	.	PASS	END=246498703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr1	246498704	.	A	.	.	PASS	END=246498771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:96:60
chr1	246498772	.	T	.	.	PASS	END=246498778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr1	246518314	.	T	.	.	PASS	END=246518342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr1	246518343	.	G	.	.	PASS	END=246518366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	246518367	.	C	.	.	PASS	END=246518413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr1	246670355	.	C	.	.	PASS	END=246670390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr1	246670391	.	C	.	.	PASS	END=246670393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr1	246670394	.	C	.	.	PASS	END=246670437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr1	246670438	.	C	.	.	PASS	END=246670480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr1	246670481	.	C	G	5755.78	PASS	DP=224;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=24.6591;MQ=60;MQ0=0;QD=25.70;SB=-3895.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,223:224:99:5756,421,0:60:99:1.000
chr1	246670482	.	T	.	.	PASS	END=246670519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr1	246704331	.	T	.	.	LowGQX	END=246704506	GT	./.
chr1	246707791	.	A	.	.	LowGQX	END=246707985	GT	./.
chr1	246711819	.	A	.	.	LowGQX	END=246711918	GT	./.
chr1	246714510	.	C	.	.	LowGQX	END=246714609	GT	./.
chr1	246719873	.	A	.	.	LowGQX	END=246719931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246719932	.	A	.	.	LowGQX	END=246720062	GT	./.
chr1	246720651	.	A	.	.	LowGQX	END=246720838	GT	./.
chr1	246727643	.	T	.	.	LowGQX	END=246727742	GT	./.
chr1	246729126	.	A	.	.	LowGQX	END=246729442	GT	./.
chr1	246754863	.	T	.	.	LowGQX	END=246754868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246754869	.	A	.	.	LowGQX	END=246755222	GT	./.
chr1	246755223	.	C	.	.	LowGQX	END=246755245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246784729	.	A	.	.	LowGQX	END=246784938	GT	./.
chr1	246795102	.	A	.	.	LowGQX	END=246795261	GT	./.
chr1	246797220	.	A	.	.	LowGQX	END=246797228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246797229	.	A	.	.	LowGQX	END=246797319	GT	./.
chr1	246797773	.	A	.	.	LowGQX	END=246797891	GT	./.
chr1	246804959	.	A	.	.	LowGQX	END=246805111	GT	./.
chr1	246805241	.	A	.	.	LowGQX	END=246805341	GT	./.
chr1	246810439	.	A	.	.	LowGQX	END=246811303	GT	./.
chr1	246811304	.	C	.	.	LowGQX	END=246811312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246811313	.	C	.	.	LowGQX	.	GT	./.
chr1	246811314	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246811315	.	T	.	.	LowGQX	.	GT	./.
chr1	246811316	.	G	.	.	LowGQX	END=246811323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246811324	.	G	.	.	LowGQX	.	GT	./.
chr1	246811325	.	A	.	.	LowGQX	END=246811330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246811331	.	A	.	.	LowGQX	END=246811332	GT	./.
chr1	246811333	.	T	.	.	LowGQX	END=246811340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246811341	.	T	.	.	LowGQX	END=246811342	GT	./.
chr1	246811343	.	A	.	.	LowGQX	END=246811347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246811348	.	G	.	.	LowGQX	.	GT	./.
chr1	246811349	.	A	.	.	LowGQX	END=246811354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246823499	.	A	.	.	LowGQX	END=246823638	GT	./.
chr1	246829000	.	A	.	.	LowGQX	END=246829209	GT	./.
chr1	246887712	.	C	.	.	LowGQX	END=246887932	GT	./.
chr1	246890192	.	A	.	.	LowGQX	END=246890308	GT	./.
chr1	246899268	.	T	.	.	LowGQX	END=246899287	GT	./.
chr1	246899288	.	T	.	.	LowGQX	END=246899367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903472	.	A	.	.	LowGQX	END=246903506	GT	./.
chr1	246903507	.	A	.	.	LowGQX	END=246903510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903511	.	C	.	.	LowGQX	.	GT	./.
chr1	246903512	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903513	.	G	.	.	LowGQX	END=246903514	GT	./.
chr1	246903515	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903516	.	G	.	.	LowGQX	.	GT	./.
chr1	246903517	.	A	.	.	LowGQX	END=246903518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903519	.	A	.	.	LowGQX	.	GT	./.
chr1	246903520	.	A	.	.	LowGQX	END=246903521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903522	.	G	.	.	LowGQX	.	GT	./.
chr1	246903523	.	G	.	.	LowGQX	END=246903534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903535	.	T	.	.	LowGQX	.	GT	./.
chr1	246903536	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903537	.	G	.	.	LowGQX	.	GT	./.
chr1	246903538	.	G	.	.	LowGQX	END=246903544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903545	.	C	.	.	LowGQX	END=246903546	GT	./.
chr1	246903547	.	G	.	.	LowGQX	END=246903551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903552	.	G	.	.	LowGQX	.	GT	./.
chr1	246903553	.	A	.	.	LowGQX	END=246903554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903555	.	T	.	.	LowGQX	END=246903556	GT	./.
chr1	246903557	.	C	.	.	LowGQX	END=246903560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903561	.	C	.	.	LowGQX	.	GT	./.
chr1	246903562	.	C	.	.	LowGQX	END=246903563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903564	.	G	.	.	LowGQX	.	GT	./.
chr1	246903565	.	C	.	.	LowGQX	END=246903567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903568	.	A	.	.	LowGQX	.	GT	./.
chr1	246903569	.	T	.	.	LowGQX	END=246903572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903573	.	G	.	.	LowGQX	END=246903574	GT	./.
chr1	246903575	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903576	.	G	.	.	LowGQX	.	GT	./.
chr1	246903577	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903578	.	A	.	.	LowGQX	.	GT	./.
chr1	246903579	.	A	.	.	LowGQX	END=246903583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903584	.	T	.	.	LowGQX	.	GT	./.
chr1	246903585	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903586	.	C	.	.	LowGQX	.	GT	./.
chr1	246903587	.	C	.	.	LowGQX	END=246903588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903589	.	G	.	.	LowGQX	.	GT	./.
chr1	246903590	.	A	.	.	LowGQX	END=246903595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903596	.	A	.	.	LowGQX	.	GT	./.
chr1	246903597	.	A	.	.	LowGQX	END=246903604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246903605	.	T	.	.	LowGQX	.	GT	./.
chr1	246907353	.	T	.	.	LowGQX	END=246907452	GT	./.
chr1	246921526	.	A	.	.	LowGQX	END=246921660	GT	./.
chr1	246922284	.	G	.	.	LowGQX	END=246922455	GT	./.
chr1	246923257	.	A	.	.	LowGQX	END=246923262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246923263	.	A	.	.	LowGQX	END=246923380	GT	./.
chr1	246923452	.	A	.	.	LowGQX	END=246923551	GT	./.
chr1	246927546	.	A	.	.	LowGQX	END=246927661	GT	./.
chr1	246929351	.	T	.	.	LowGQX	END=246929360	GT	./.
chr1	246929361	.	G	.	.	LowGQX	END=246929392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	246929393	.	T	.	.	LowGQX	.	GT	./.
chr1	246929394	.	T	.	.	LowGQX	END=246929450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	246930495	.	A	.	.	LowGQX	END=246930604	GT	./.
chr1	246939493	.	C	.	.	LowGQX	END=246939561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246939562	.	T	.	.	LowGQX	.	GT	./.
chr1	246939563	.	G	.	.	LowGQX	END=246939568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246939569	.	A	.	.	LowGQX	END=246939592	GT	./.
chr1	246939841	.	C	.	.	LowGQX	END=246939986	GT	./.
chr1	246940235	.	C	.	.	LowGQX	END=246940342	GT	./.
chr1	246940575	.	C	.	.	LowGQX	.	GT	./.
chr1	246940576	.	C	.	.	LowGQX	END=246940583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940584	.	C	.	.	LowGQX	END=246940585	GT	./.
chr1	246940586	.	C	.	.	LowGQX	END=246940593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940594	.	C	.	.	LowGQX	.	GT	./.
chr1	246940595	.	A	.	.	LowGQX	END=246940600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940601	.	A	.	.	LowGQX	.	GT	./.
chr1	246940602	.	A	.	.	LowGQX	END=246940605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940606	.	C	.	.	LowGQX	.	GT	./.
chr1	246940607	.	A	.	.	LowGQX	END=246940610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940611	.	G	.	.	LowGQX	.	GT	./.
chr1	246940612	.	T	.	.	LowGQX	END=246940616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940617	.	A	.	.	LowGQX	.	GT	./.
chr1	246940618	.	A	.	.	LowGQX	END=246940619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940620	.	T	.	.	LowGQX	END=246940621	GT	./.
chr1	246940622	.	A	.	.	LowGQX	END=246940626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940627	.	G	.	.	LowGQX	.	GT	./.
chr1	246940628	.	A	.	.	LowGQX	END=246940632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940633	.	C	.	.	LowGQX	END=246940634	GT	./.
chr1	246940635	.	T	.	.	LowGQX	END=246940637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940638	.	G	.	.	LowGQX	.	GT	./.
chr1	246940639	.	A	.	.	LowGQX	END=246940641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940642	.	C	.	.	LowGQX	.	GT	./.
chr1	246940643	.	A	.	.	LowGQX	END=246940646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940647	.	A	.	.	LowGQX	.	GT	./.
chr1	246940648	.	A	.	.	LowGQX	END=246940651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940652	.	T	.	.	LowGQX	.	GT	./.
chr1	246940653	.	G	.	.	LowGQX	END=246940657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940658	.	T	.	.	LowGQX	.	GT	./.
chr1	246940659	.	T	.	.	LowGQX	END=246940660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940661	.	G	.	.	LowGQX	END=246940662	GT	./.
chr1	246940663	.	C	.	.	LowGQX	END=246940669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940670	.	T	.	.	LowGQX	.	GT	./.
chr1	246940671	.	T	.	.	LowGQX	END=246940672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940673	.	A	.	.	LowGQX	.	GT	./.
chr1	246940674	.	A	.	.	LowGQX	END=246940678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940679	.	T	.	.	LowGQX	.	GT	./.
chr1	246940680	.	G	.	.	LowGQX	END=246940681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940682	.	A	.	.	LowGQX	.	GT	./.
chr1	246940683	.	T	.	.	LowGQX	END=246940684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	246940685	.	C	.	.	LowGQX	END=246940742	GT	./.
chr1	246942114	.	C	.	.	LowGQX	END=246942249	GT	./.
chr1	246943596	.	C	.	.	LowGQX	END=246943826	GT	./.
chr1	247004106	.	A	.	.	LowGQX	END=247004110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:59
chr1	247004111	.	C	.	.	LowGQX	.	GT	./.
chr1	247004112	.	A	.	.	LowGQX	END=247004143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:59
chr1	247004144	.	G	.	.	LowGQX	.	GT	./.
chr1	247004145	.	G	.	.	LowGQX	END=247004242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:59
chr1	247004243	.	G	.	.	LowGQX	END=247004305	GT	./.
chr1	247005988	.	A	.	.	LowGQX	END=247006087	GT	./.
chr1	247007055	.	T	.	.	LowGQX	END=247007232	GT	./.
chr1	247012915	.	A	.	.	LowGQX	END=247012935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247012936	.	T	.	.	LowGQX	END=247013108	GT	./.
chr1	247013109	.	C	.	.	LowGQX	END=247013141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	247013142	.	T	.	.	LowGQX	.	GT	./.
chr1	247013143	.	T	.	.	LowGQX	END=247013163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	247013164	.	A	.	.	LowGQX	.	GT	./.
chr1	247013165	.	A	.	.	LowGQX	END=247013172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	247013173	.	C	.	.	LowGQX	.	GT	./.
chr1	247013174	.	T	.	.	LowGQX	END=247013178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	247013179	.	G	.	.	LowGQX	.	GT	./.
chr1	247013180	.	C	.	.	LowGQX	END=247013181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	247013182	.	C	.	.	LowGQX	.	GT	./.
chr1	247013183	.	A	.	.	LowGQX	END=247013283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	247013284	.	T	.	.	LowGQX	.	GT	./.
chr1	247013285	.	C	.	.	LowGQX	END=247013317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247013318	.	G	.	.	LowGQX	.	GT	./.
chr1	247013319	.	G	.	.	LowGQX	END=247013337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247013338	.	A	.	.	LowGQX	END=247013923	GT	./.
chr1	247013924	.	C	.	.	LowGQX	END=247014109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	247014110	.	T	.	.	LowGQX	.	GT	./.
chr1	247014111	.	C	.	.	LowGQX	END=247014128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	247014129	.	T	.	.	LowGQX	.	GT	./.
chr1	247014130	.	C	.	.	LowGQX	END=247014216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	247014217	.	T	.	.	LowGQX	END=247014746	GT	./.
chr1	247016391	.	A	.	.	LowGQX	END=247016512	GT	./.
chr1	247016513	.	T	.	.	LowGQX	END=247016603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247019030	.	A	.	.	LowGQX	END=247019131	GT	./.
chr1	247020991	.	A	.	.	LowGQX	END=247021104	GT	./.
chr1	247021105	.	C	.	.	LowGQX	END=247021118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247024199	.	A	.	.	LowGQX	END=247024599	GT	./.
chr1	247025259	.	A	.	.	LowGQX	END=247025457	GT	./.
chr1	247027214	.	G	.	.	LowGQX	END=247027420	GT	./.
chr1	247030544	.	A	.	.	LowGQX	END=247030655	GT	./.
chr1	247030931	.	A	.	.	LowGQX	END=247030937	GT	./.
chr1	247030938	.	C	.	.	LowGQX	END=247031092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247031093	.	A	.	.	LowGQX	END=247031115	GT	./.
chr1	247039337	.	A	.	.	LowGQX	END=247039491	GT	./.
chr1	247040250	.	A	.	.	LowGQX	END=247040385	GT	./.
chr1	247040458	.	A	.	.	LowGQX	END=247040523	GT	./.
chr1	247040524	.	T	.	.	LowGQX	END=247040606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247048793	.	A	.	.	LowGQX	END=247048833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247048834	.	T	C	9.10	LowGQX	BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.03;ReadPosRankSum=0.736;SB=-25.53	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr1	247048835	.	T	.	.	LowGQX	END=247048984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247050511	.	A	.	.	LowGQX	END=247050661	GT	./.
chr1	247051458	.	G	.	.	LowGQX	END=247051557	GT	./.
chr1	247051694	.	A	.	.	LowGQX	END=247051821	GT	./.
chr1	247053265	.	T	.	.	LowGQX	END=247053364	GT	./.
chr1	247054256	.	A	.	.	LowGQX	END=247054415	GT	./.
chr1	247055048	.	T	.	.	LowGQX	END=247055258	GT	./.
chr1	247057956	.	C	.	.	LowGQX	END=247058001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247058002	.	C	.	.	LowGQX	END=247058055	GT	./.
chr1	247059133	.	T	.	.	LowGQX	END=247059232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247061468	.	T	.	.	LowGQX	END=247061640	GT	./.
chr1	247062734	.	A	.	.	LowGQX	END=247062833	GT	./.
chr1	247063345	.	G	.	.	LowGQX	END=247063550	GT	./.
chr1	247063637	.	A	.	.	LowGQX	END=247063816	GT	./.
chr1	247065825	.	A	.	.	LowGQX	END=247065979	GT	./.
chr1	247067244	.	C	.	.	LowGQX	END=247067252	GT	./.
chr1	247067253	.	C	.	.	LowGQX	END=247067285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247067286	.	T	.	.	LowGQX	.	GT	./.
chr1	247067287	.	A	.	.	LowGQX	END=247067288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247067289	.	T	.	.	LowGQX	.	GT	./.
chr1	247067290	.	A	.	.	LowGQX	END=247067343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247068841	.	A	.	.	LowGQX	END=247068843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247068844	.	T	.	.	LowGQX	END=247068961	GT	./.
chr1	247070851	.	A	.	.	LowGQX	END=247071062	GT	./.
chr1	247076532	.	A	.	.	LowGQX	END=247076635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247076636	.	G	.	.	LowGQX	END=247076716	GT	./.
chr1	247079442	.	A	.	.	LowGQX	END=247079699	GT	./.
chr1	247081550	.	A	.	.	LowGQX	END=247081569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	247081570	.	G	T	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr1	247081571	.	A	.	.	LowGQX	END=247081679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247094430	.	C	.	.	LowGQX	END=247094529	GT	./.
chr1	247094570	.	C	.	.	LowGQX	END=247094669	GT	./.
chr1	247109064	.	T	.	.	LowGQX	END=247109163	GT	./.
chr1	247130032	.	A	.	.	LowGQX	END=247130191	GT	./.
chr1	247130666	.	C	.	.	LowGQX	END=247130765	GT	./.
chr1	247130996	.	C	.	.	LowGQX	END=247131024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247131025	.	T	.	.	LowGQX	.	GT	./.
chr1	247131026	.	C	.	.	LowGQX	END=247131031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247131032	.	A	.	.	LowGQX	END=247131095	GT	./.
chr1	247143231	.	G	.	.	LowGQX	END=247143267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:42
chr1	247143268	.	T	C	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=42;MQ0=0;QD=7.46;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:42:3:1.000
chr1	247143269	.	G	.	.	LowGQX	END=247143288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:42
chr1	247143289	.	G	.	.	LowGQX	END=247143330	GT	./.
chr1	247150268	.	C	.	.	LowGQX	END=247150681	GT	./.
chr1	247150682	.	G	.	.	LowGQX	END=247150725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247150726	.	C	A	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	247150727	.	T	.	.	LowGQX	END=247150733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247150734	.	A	.	.	LowGQX	.	GT	./.
chr1	247150735	.	A	.	.	LowGQX	END=247150739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247150740	.	T	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	247150741	.	T	.	.	LowGQX	END=247150743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247150744	.	C	.	.	LowGQX	.	GT	./.
chr1	247150745	.	C	.	.	LowGQX	END=247150848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247150849	.	G	.	.	LowGQX	.	GT	./.
chr1	247150850	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247150851	.	T	.	.	LowGQX	END=247151380	GT	./.
chr1	247151381	.	G	.	.	LowGQX	END=247151383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247151384	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	247151385	.	A	.	.	LowGQX	END=247151401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247151402	.	C	.	.	LowGQX	.	GT	./.
chr1	247151403	.	C	.	.	LowGQX	END=247151409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247151410	.	C	.	.	LowGQX	.	GT	./.
chr1	247151411	.	C	.	.	LowGQX	END=247151412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247151413	.	T	.	.	LowGQX	.	GT	./.
chr1	247151414	.	T	.	.	LowGQX	END=247151439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247151440	.	T	.	.	LowGQX	.	GT	./.
chr1	247151441	.	T	.	.	LowGQX	END=247151463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247151464	.	C	.	.	LowGQX	.	GT	./.
chr1	247151465	.	A	.	.	LowGQX	END=247151471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247151472	.	T	.	.	LowGQX	.	GT	./.
chr1	247151473	.	T	.	.	LowGQX	END=247151487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247151488	.	A	.	.	LowGQX	END=247151557	GT	./.
chr1	247159292	.	A	.	.	LowGQX	END=247159428	GT	./.
chr1	247159429	.	C	.	.	LowGQX	END=247159435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247159436	.	T	.	.	LowGQX	.	GT	./.
chr1	247159437	.	A	.	.	LowGQX	END=247159474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247159475	.	T	.	.	LowGQX	.	GT	./.
chr1	247159476	.	C	.	.	LowGQX	END=247159477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247159478	.	T	.	.	LowGQX	.	GT	./.
chr1	247159479	.	C	.	.	LowGQX	END=247159483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247162646	.	C	.	.	LowGQX	END=247162655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247162656	.	G	.	.	LowGQX	.	GT	./.
chr1	247162657	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247162658	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	247162659	.	T	.	.	LowGQX	END=247162673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247162674	.	T	.	.	LowGQX	END=247162745	GT	./.
chr1	247163183	.	A	.	.	LowGQX	END=247163296	GT	./.
chr1	247163297	.	A	.	.	LowGQX	END=247163317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247163318	.	A	.	.	LowGQX	.	GT	./.
chr1	247163319	.	G	.	.	LowGQX	END=247163323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247163324	.	T	.	.	LowGQX	.	GT	./.
chr1	247163325	.	C	.	.	LowGQX	END=247163338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247163339	.	G	.	.	LowGQX	.	GT	./.
chr1	247163340	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247163341	.	G	.	.	LowGQX	.	GT	./.
chr1	247163342	.	A	.	.	LowGQX	END=247163343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247163344	.	T	.	.	LowGQX	.	GT	./.
chr1	247163345	.	T	.	.	LowGQX	END=247163348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247163349	.	G	.	.	LowGQX	.	GT	./.
chr1	247163350	.	A	.	.	LowGQX	END=247163351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247163352	.	C	.	.	LowGQX	.	GT	./.
chr1	247163353	.	C	.	.	LowGQX	END=247163356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247163357	.	T	.	.	LowGQX	.	GT	./.
chr1	247163358	.	C	.	.	LowGQX	END=247163376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247171159	.	T	.	.	LowGQX	END=247171258	GT	./.
chr1	247200749	.	T	.	.	LowGQX	END=247201009	GT	./.
chr1	247201010	.	C	.	.	LowGQX	END=247201086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201087	.	T	.	.	LowGQX	.	GT	./.
chr1	247201088	.	T	.	.	LowGQX	END=247201111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201112	.	A	.	.	LowGQX	END=247201113	GT	./.
chr1	247201114	.	T	.	.	LowGQX	END=247201115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201116	.	C	.	.	LowGQX	END=247201117	GT	./.
chr1	247201118	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201119	.	A	.	.	LowGQX	END=247201120	GT	./.
chr1	247201121	.	T	.	.	LowGQX	END=247201123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201124	.	G	.	.	LowGQX	.	GT	./.
chr1	247201125	.	T	.	.	LowGQX	END=247201129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201130	.	C	.	.	LowGQX	END=247201131	GT	./.
chr1	247201132	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201133	.	C	.	.	LowGQX	.	GT	./.
chr1	247201134	.	T	.	.	LowGQX	END=247201140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201141	.	T	.	.	LowGQX	.	GT	./.
chr1	247201142	.	T	.	.	LowGQX	END=247201143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201144	.	G	.	.	LowGQX	.	GT	./.
chr1	247201145	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201146	.	C	.	.	LowGQX	END=247201147	GT	./.
chr1	247201148	.	C	.	.	LowGQX	END=247201151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201152	.	C	.	.	LowGQX	.	GT	./.
chr1	247201153	.	C	.	.	LowGQX	END=247201156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201157	.	C	.	.	LowGQX	.	GT	./.
chr1	247201158	.	A	.	.	LowGQX	END=247201160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247201161	.	C	.	.	LowGQX	.	GT	./.
chr1	247201162	.	A	.	.	LowGQX	END=247201163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201164	.	A	.	.	LowGQX	.	GT	./.
chr1	247201165	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201166	.	G	.	.	LowGQX	END=247201167	GT	./.
chr1	247201168	.	T	.	.	LowGQX	END=247201170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201171	.	C	.	.	LowGQX	END=247201172	GT	./.
chr1	247201173	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201174	.	T	.	.	LowGQX	.	GT	./.
chr1	247201175	.	C	.	.	LowGQX	END=247201176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201177	.	A	.	.	LowGQX	.	GT	./.
chr1	247201178	.	G	.	.	LowGQX	END=247201184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201185	.	A	.	.	LowGQX	.	GT	./.
chr1	247201186	.	T	.	.	LowGQX	END=247201194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201195	.	T	.	.	LowGQX	END=247201196	GT	./.
chr1	247201197	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201198	.	G	.	.	LowGQX	.	GT	./.
chr1	247201199	.	C	.	.	LowGQX	END=247201200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201201	.	A	.	.	LowGQX	.	GT	./.
chr1	247201202	.	A	.	.	LowGQX	END=247201203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201204	.	A	.	.	LowGQX	END=247201205	GT	./.
chr1	247201206	.	A	.	.	LowGQX	END=247201215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201216	.	A	.	.	LowGQX	.	GT	./.
chr1	247201217	.	G	.	.	LowGQX	END=247201218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201219	.	G	.	.	LowGQX	.	GT	./.
chr1	247201220	.	A	.	.	LowGQX	END=247201221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201222	.	T	.	.	LowGQX	.	GT	./.
chr1	247201223	.	G	.	.	LowGQX	END=247201227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201228	.	A	.	.	LowGQX	.	GT	./.
chr1	247201229	.	C	.	.	LowGQX	END=247201236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201237	.	C	.	.	LowGQX	END=247201238	GT	./.
chr1	247201239	.	T	.	.	LowGQX	END=247201243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201244	.	G	.	.	LowGQX	.	GT	./.
chr1	247201245	.	C	.	.	LowGQX	END=247201308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247201309	.	T	.	.	LowGQX	END=247201616	GT	./.
chr1	247201617	.	G	.	.	LowGQX	END=247201731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247202093	.	T	.	.	LowGQX	END=247202192	GT	./.
chr1	247202661	.	C	.	.	LowGQX	END=247202676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	247202677	.	G	.	.	LowGQX	END=247202699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	247202700	.	T	.	.	PASS	END=247202718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr1	247202719	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:60
chr1	247202720	.	A	.	.	PASS	END=247202745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chr1	247202746	.	T	.	.	PASS	END=247202770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:60
chr1	247202771	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:11:60
chr1	247202772	.	G	.	.	PASS	END=247202775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:39:60
chr1	247202776	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:3:60
chr1	247202777	.	A	.	.	PASS	END=247202786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr1	247202787	.	G	.	.	PASS	END=247202807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:60
chr1	247202808	.	G	.	.	PASS	END=247202841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr1	247241848	.	T	.	.	LowGQX	END=247241912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247241913	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	247241914	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	247241915	.	T	.	.	LowGQX	.	GT	./.
chr1	247241916	.	C	.	.	LowGQX	END=247241947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247263674	.	G	.	.	LowGQX	END=247264384	GT	./.
chr1	247264385	.	T	.	.	LowGQX	END=247264391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264392	.	A	.	.	LowGQX	.	GT	./.
chr1	247264393	.	C	.	.	LowGQX	END=247264394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264395	.	G	.	.	LowGQX	END=247264396	GT	./.
chr1	247264397	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264398	.	C	.	.	LowGQX	.	GT	./.
chr1	247264399	.	A	.	.	LowGQX	END=247264403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264404	.	T	.	.	LowGQX	.	GT	./.
chr1	247264405	.	A	.	.	LowGQX	END=247264415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264416	.	C	.	.	LowGQX	.	GT	./.
chr1	247264417	.	T	.	.	LowGQX	END=247264420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264421	.	T	.	.	LowGQX	.	GT	./.
chr1	247264422	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264423	.	T	.	.	LowGQX	.	GT	./.
chr1	247264424	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264425	.	G	.	.	LowGQX	.	GT	./.
chr1	247264426	.	T	.	.	LowGQX	END=247264427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264428	.	T	.	.	LowGQX	.	GT	./.
chr1	247264429	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264430	.	T	.	.	LowGQX	.	GT	./.
chr1	247264431	.	A	.	.	LowGQX	END=247264432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264433	.	C	.	.	LowGQX	END=247264434	GT	./.
chr1	247264435	.	T	.	.	LowGQX	END=247264439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264440	.	G	.	.	LowGQX	.	GT	./.
chr1	247264441	.	A	.	.	LowGQX	END=247264442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264443	.	C	.	.	LowGQX	.	GT	./.
chr1	247264444	.	T	.	.	LowGQX	END=247264445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264446	.	G	.	.	LowGQX	.	GT	./.
chr1	247264447	.	G	.	.	LowGQX	END=247264453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264454	.	C	.	.	LowGQX	.	GT	./.
chr1	247264455	.	T	.	.	LowGQX	END=247264460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264461	.	G	.	.	LowGQX	.	GT	./.
chr1	247264462	.	G	.	.	LowGQX	END=247264469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264470	.	G	.	.	LowGQX	.	GT	./.
chr1	247264471	.	A	.	.	LowGQX	END=247264473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264474	.	T	.	.	LowGQX	.	GT	./.
chr1	247264475	.	A	.	.	LowGQX	END=247264480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264481	.	A	.	.	LowGQX	.	GT	./.
chr1	247264482	.	C	.	.	LowGQX	END=247264487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264488	.	C	.	.	LowGQX	.	GT	./.
chr1	247264489	.	A	.	.	LowGQX	END=247264493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264494	.	T	.	.	LowGQX	END=247264496	GT	./.
chr1	247264497	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264498	.	G	.	.	LowGQX	.	GT	./.
chr1	247264499	.	C	.	.	LowGQX	END=247264502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264503	.	C	.	.	LowGQX	.	GT	./.
chr1	247264504	.	A	.	.	LowGQX	END=247264507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264508	.	G	.	.	LowGQX	END=247264509	GT	./.
chr1	247264510	.	T	.	.	LowGQX	END=247264511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264512	.	T	.	.	LowGQX	.	GT	./.
chr1	247264513	.	T	.	.	LowGQX	END=247264515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264516	.	T	.	.	LowGQX	.	GT	./.
chr1	247264517	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264518	.	C	.	.	LowGQX	END=247264520	GT	./.
chr1	247264521	.	T	.	.	LowGQX	END=247264531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264532	.	T	.	.	LowGQX	.	GT	./.
chr1	247264533	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264534	.	G	.	.	LowGQX	END=247264553	GT	./.
chr1	247264554	.	T	.	.	LowGQX	END=247264556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264557	.	G	.	.	LowGQX	END=247264558	GT	./.
chr1	247264559	.	C	.	.	LowGQX	END=247264562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264563	.	C	.	.	LowGQX	.	GT	./.
chr1	247264564	.	A	.	.	LowGQX	END=247264574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264575	.	A	.	.	LowGQX	.	GT	./.
chr1	247264576	.	C	.	.	LowGQX	END=247264579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264580	.	C	.	.	LowGQX	.	GT	./.
chr1	247264581	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264582	.	A	.	.	LowGQX	.	GT	./.
chr1	247264583	.	T	.	.	LowGQX	END=247264595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264596	.	C	.	.	LowGQX	END=247264597	GT	./.
chr1	247264598	.	C	.	.	LowGQX	END=247264603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247264604	.	C	.	.	LowGQX	END=247264605	GT	./.
chr1	247264606	.	C	.	.	LowGQX	END=247264623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247265014	.	T	.	.	LowGQX	END=247265113	GT	./.
chr1	247265237	.	T	.	.	LowGQX	END=247265313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247265314	.	T	.	.	LowGQX	.	GT	./.
chr1	247265315	.	T	.	.	LowGQX	END=247265327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247265328	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	247265329	.	T	.	.	LowGQX	END=247265331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247265332	.	G	.	.	LowGQX	.	GT	./.
chr1	247265333	.	T	.	.	LowGQX	END=247265361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247265362	.	A	.	.	LowGQX	END=247265417	GT	./.
chr1	247267229	.	T	.	.	LowGQX	END=247267503	GT	./.
chr1	247274800	.	G	.	.	LowGQX	END=247275261	GT	./.
chr1	247275262	.	G	.	.	LowGQX	END=247275506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247275507	.	T	.	.	LowGQX	END=247275528	GT	./.
chr1	247287122	.	G	.	.	LowGQX;LowMQ	END=247287221	GT	./.
chr1	247319866	.	C	.	.	LowGQX	END=247319991	GT	./.
chr1	247319992	.	G	.	.	LowGQX	END=247320124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247320125	.	A	.	.	LowGQX	END=247320806	GT	./.
chr1	247322236	.	T	.	.	LowGQX	END=247322277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247322278	.	G	.	.	LowGQX	END=247322388	GT	./.
chr1	247322937	.	A	.	.	PASS	END=247322955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr1	247322956	.	A	.	.	PASS	END=247322966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr1	247322967	.	G	C	331.74	PASS	BaseQRankSum=-0.546;DP=16;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=1.516;QD=20.73;ReadPosRankSum=-0.061;SB=-63.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:4,12:16:84.24:362,0,84:60:84:0.750
chr1	247322968	.	A	.	.	PASS	END=247323026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr1	247323027	.	T	.	.	PASS	END=247323040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr1	247323041	.	C	.	.	PASS	END=247323103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr1	247323104	.	G	.	.	PASS	END=247323107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr1	247323108	.	A	.	.	PASS	END=247323117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr1	247335055	.	C	.	.	LowGQX	END=247335171	GT	./.
chr1	247335172	.	C	.	.	LowGQX;LowMQ	END=247335214	GT	./.
chr1	247419373	.	G	.	.	LowGQX	END=247419599	GT	./.
chr1	247419600	.	G	.	.	LowGQX	END=247419663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247419664	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	247419665	.	C	.	.	LowGQX	END=247419762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247419763	.	C	.	.	LowGQX	END=247420292	GT	./.
chr1	247420293	.	T	.	.	LowGQX	END=247420371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247420372	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	247420373	.	T	.	.	LowGQX	END=247420447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463819	.	G	.	.	LowGQX	END=247463820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463821	.	T	.	.	LowGQX	.	GT	./.
chr1	247463822	.	C	.	.	LowGQX	END=247463823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463824	.	G	.	.	LowGQX	.	GT	./.
chr1	247463825	.	T	.	.	LowGQX	END=247463835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463836	.	A	.	.	LowGQX	END=247463837	GT	./.
chr1	247463838	.	C	.	.	LowGQX	END=247463840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463841	.	G	.	.	LowGQX	END=247463843	GT	./.
chr1	247463844	.	T	.	.	LowGQX	END=247463849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463850	.	G	.	.	LowGQX	.	GT	./.
chr1	247463851	.	G	.	.	LowGQX	END=247463853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463854	.	C	.	.	LowGQX	.	GT	./.
chr1	247463855	.	T	.	.	LowGQX	END=247463866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463867	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	247463868	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247463869	.	C	.	.	LowGQX	.	GT	./.
chr1	247463870	.	T	.	.	LowGQX	END=247463873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247463874	.	G	.	.	LowGQX	.	GT	./.
chr1	247463875	.	G	.	.	LowGQX	END=247463884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247463885	.	T	.	.	LowGQX	.	GT	./.
chr1	247463886	.	C	.	.	LowGQX	END=247463892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247463893	.	C	.	.	LowGQX	.	GT	./.
chr1	247463894	.	T	.	.	LowGQX	END=247463909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247463910	.	C	.	.	LowGQX	.	GT	./.
chr1	247463911	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247463912	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	247463913	.	A	.	.	LowGQX	END=247463916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247463917	.	C	.	.	LowGQX	END=247463918	GT	./.
chr1	247463919	.	G	.	.	LowGQX	END=247463920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247463921	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	247463922	.	A	.	.	LowGQX	.	GT	./.
chr1	247463923	.	C	.	.	LowGQX	END=247463931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247463932	.	C	.	.	LowGQX	END=247463934	GT	./.
chr1	247463935	.	G	.	.	LowGQX	END=247463942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463943	.	C	.	.	LowGQX	END=247463945	GT	./.
chr1	247463946	.	T	.	.	LowGQX	END=247463947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463948	.	A	.	.	LowGQX	.	GT	./.
chr1	247463949	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463950	.	G	.	.	LowGQX	.	GT	./.
chr1	247463951	.	T	.	.	LowGQX	END=247463952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463953	.	A	.	.	LowGQX	END=247463954	GT	./.
chr1	247463955	.	A	.	.	LowGQX	END=247463958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463959	.	G	.	.	LowGQX	END=247463960	GT	./.
chr1	247463961	.	T	.	.	LowGQX	END=247463972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463973	.	C	.	.	LowGQX	END=247463974	GT	./.
chr1	247463975	.	A	.	.	LowGQX	END=247463977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463978	.	T	.	.	LowGQX	.	GT	./.
chr1	247463979	.	G	.	.	LowGQX	END=247463980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463981	.	T	.	.	LowGQX	.	GT	./.
chr1	247463982	.	C	.	.	LowGQX	END=247463983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463984	.	T	.	.	LowGQX	.	GT	./.
chr1	247463985	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463986	.	C	.	.	LowGQX	END=247463987	GT	./.
chr1	247463988	.	G	.	.	LowGQX	END=247463990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463991	.	G	.	.	LowGQX	END=247463992	GT	./.
chr1	247463993	.	A	.	.	LowGQX	END=247463997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247463998	.	C	.	.	LowGQX	.	GT	./.
chr1	247463999	.	T	.	.	LowGQX	END=247464005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247464006	.	A	.	.	LowGQX	.	GT	./.
chr1	247464007	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247464008	.	T	.	.	LowGQX	END=247464580	GT	./.
chr1	247467294	.	C	.	.	LowGQX	END=247467393	GT	./.
chr1	247471775	.	A	.	.	LowGQX	END=247471797	GT	./.
chr1	247471798	.	C	.	.	LowGQX	END=247471821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247471822	.	A	.	.	LowGQX	.	GT	./.
chr1	247471823	.	C	.	.	LowGQX	END=247471851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247471852	.	T	.	.	LowGQX	.	GT	./.
chr1	247471853	.	T	.	.	LowGQX	END=247471854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247471855	.	T	.	.	LowGQX	.	GT	./.
chr1	247471856	.	T	.	.	LowGQX	END=247471881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247471882	.	T	.	.	LowGQX	.	GT	./.
chr1	247471883	.	T	.	.	LowGQX	END=247471892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247472999	.	A	.	.	LowGQX	END=247473110	GT	./.
chr1	247473615	.	T	.	.	LowGQX	END=247473760	GT	./.
chr1	247485999	.	C	.	.	LowGQX	END=247486023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247486024	.	A	.	.	LowGQX	.	GT	./.
chr1	247486025	.	A	.	.	LowGQX	END=247486063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247486064	.	A	.	.	LowGQX	.	GT	./.
chr1	247486065	.	A	.	.	LowGQX	END=247486089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247486090	.	A	.	.	LowGQX	.	GT	./.
chr1	247486091	.	T	.	.	LowGQX	END=247486094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247486095	.	A	.	.	LowGQX	.	GT	./.
chr1	247486096	.	T	.	.	LowGQX	END=247486107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247486445	.	A	.	.	LowGQX	END=247486544	GT	./.
chr1	247491983	.	A	.	.	LowGQX	END=247492075	GT	./.
chr1	247492076	.	G	.	.	LowGQX	END=247492108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247492109	.	C	.	.	LowGQX	.	GT	./.
chr1	247492110	.	T	.	.	LowGQX	END=247492113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247492114	.	G	.	.	LowGQX	END=247492115	GT	./.
chr1	247492116	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247492117	.	C	.	.	LowGQX	.	GT	./.
chr1	247492118	.	C	.	.	LowGQX	END=247492125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247492126	.	T	.	.	LowGQX	.	GT	./.
chr1	247492127	.	G	.	.	LowGQX	END=247492129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247492130	.	C	.	.	LowGQX	END=247492136	GT	./.
chr1	247492137	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247492138	.	C	.	.	LowGQX	.	GT	./.
chr1	247492139	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247492140	.	A	.	.	LowGQX	.	GT	./.
chr1	247492141	.	T	.	.	LowGQX	END=247492142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247492143	.	A	.	.	LowGQX	END=247492145	GT	./.
chr1	247492146	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247492147	.	C	.	.	LowGQX	END=247492148	GT	./.
chr1	247492149	.	G	.	.	LowGQX	END=247492151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247492152	.	T	.	.	LowGQX	END=247492154	GT	./.
chr1	247492155	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247492156	.	C	.	.	LowGQX	.	GT	./.
chr1	247492157	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247492158	.	C	.	.	LowGQX	.	GT	./.
chr1	247492159	.	A	.	.	LowGQX	END=247492160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247492161	.	T	.	.	LowGQX	END=247492162	GT	./.
chr1	247492163	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247492164	.	T	.	.	LowGQX	END=247492165	GT	./.
chr1	247492166	.	G	.	.	LowGQX	END=247492168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247492169	.	C	.	.	LowGQX	END=247492170	GT	./.
chr1	247492479	.	T	.	.	LowGQX	END=247492532	GT	./.
chr1	247492533	.	C	.	.	LowGQX	END=247492535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247492536	.	G	.	.	LowGQX	.	GT	./.
chr1	247492537	.	G	.	.	LowGQX	END=247492545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247492546	.	T	.	13.53	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.09:60:0
chr1	247492547	.	G	.	.	LowGQX	END=247492548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247492549	.	T	.	5.79	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.01:60:0
chr1	247492550	.	C	.	.	LowGQX	END=247492555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247492556	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	247492557	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	247492558	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	247492559	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	247492560	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	247492561	.	G	.	.	LowGQX	END=247492566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247492567	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	247492568	.	G	.	.	LowGQX	END=247492570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	247492571	.	C	.	.	LowGQX	END=247492585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247492586	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	247492587	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247492588	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	247492589	.	T	.	.	LowGQX	END=247492594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247492595	.	G	.	.	LowGQX	END=247492599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	247492600	.	A	.	.	LowGQX	END=247492606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247492607	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	247492608	.	C	.	.	LowGQX	END=247492609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	247492610	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	247492611	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	247492612	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	247492613	.	A	.	.	LowGQX	END=247492614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	247492615	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	247492616	.	G	.	.	LowGQX	END=247492617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	247492618	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	247492619	.	C	.	.	LowGQX	END=247492632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247492633	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	247492634	.	C	.	.	LowGQX	END=247492639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247492640	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	247492641	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr1	247492642	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	247492643	.	G	.	.	LowGQX	END=247492653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247492654	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	247492655	.	G	.	.	LowGQX	END=247492683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247492684	.	A	.	.	LowGQX	END=247492687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247492688	.	C	.	.	LowGQX	END=247492893	GT	./.
chr1	247582046	.	C	.	.	PASS	END=247582053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	247582054	.	C	.	.	PASS	END=247582070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr1	247582071	.	C	.	.	PASS	END=247582110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr1	247582111	.	C	.	.	PASS	END=247582131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr1	247582132	.	G	.	.	PASS	END=247582151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr1	247582152	.	A	.	.	PASS	END=247582190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr1	247582191	.	A	.	.	PASS	END=247582302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr1	247582303	.	C	.	.	PASS	END=247582315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr1	247582316	.	A	.	.	PASS	END=247582338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	247582339	.	A	.	.	PASS	END=247582364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	247582365	.	A	.	.	PASS	END=247582390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	247582391	.	G	.	.	PASS	END=247582426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	247582427	.	A	.	.	PASS	END=247582428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr1	247582429	.	T	.	.	PASS	END=247582430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:59
chr1	247586481	.	A	.	.	PASS	END=247586487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr1	247586488	.	G	.	.	PASS	END=247586523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:59
chr1	247586524	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:46:59
chr1	247586525	.	C	.	.	PASS	END=247586558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:59
chr1	247586559	.	C	.	.	PASS	END=247586572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:84:60
chr1	247586573	.	C	.	.	PASS	END=247586673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr1	247586674	.	C	.	.	PASS	END=247586702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr1	247587098	.	C	.	.	PASS	END=247587109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr1	247587110	.	T	.	.	PASS	END=247587139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr1	247587140	.	T	.	.	PASS	END=247587172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr1	247587173	.	A	.	.	PASS	END=247587206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr1	247587207	.	G	.	.	PASS	END=247587224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	247587225	.	G	.	.	PASS	END=247587247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr1	247587248	.	A	.	.	PASS	END=247587331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:60
chr1	247587332	.	G	.	.	PASS	END=247587398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:266:99:60
chr1	247587399	.	T	.	.	PASS	END=247587471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr1	247587472	.	T	.	.	PASS	END=247587476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	247587477	.	G	A	5968.46	PASS	DP=189;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=29.5715;MQ=60;MQ0=0;QD=31.58;SB=-2607.51	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,188:189:99:5968,454,0:60:99:1.000
chr1	247587478	.	T	.	.	PASS	END=247587530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr1	247587531	.	A	G	6010.87	PASS	BaseQRankSum=0.140;DP=186;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=16.2876;MQ=60;MQ0=0;MQRankSum=0.683;QD=32.32;ReadPosRankSum=1.077;SB=-2828.87	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,184:186:99:6011,445,0:60:99:0.995
chr1	247587532	.	G	.	.	PASS	END=247587588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr1	247587589	.	G	.	.	PASS	END=247587683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr1	247587684	.	G	.	.	PASS	END=247587768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr1	247587769	.	C	.	.	PASS	END=247587977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr1	247587978	.	C	.	.	PASS	END=247588335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr1	247588336	.	G	.	.	PASS	END=247588360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:250:99:60
chr1	247588361	.	A	.	.	PASS	END=247588564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:309:99:60
chr1	247588565	.	A	.	.	PASS	END=247588651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:60
chr1	247588652	.	A	.	.	PASS	END=247588765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr1	247588766	.	A	.	.	PASS	END=247588787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr1	247588788	.	G	.	.	PASS	END=247588804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr1	247588805	.	T	.	.	PASS	END=247588853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr1	247588854	.	G	.	.	PASS	END=247588864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	247588865	.	T	.	.	PASS	END=247588872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr1	247588873	.	A	.	.	PASS	END=247588885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:77:59
chr1	247588886	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:66:59
chr1	247588887	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:31:59
chr1	247588888	.	G	.	.	PASS	END=247588890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:59
chr1	247588891	.	T	.	.	PASS	END=247588897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:59
chr1	247588898	.	A	.	.	PASS	END=247588908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:59
chr1	247588909	.	A	.	.	PASS	END=247588910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:59
chr1	247588911	.	C	.	.	PASS	END=247588916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:59
chr1	247588917	.	T	.	.	PASS	END=247588918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:59
chr1	247588919	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:48:59
chr1	247588920	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:18:59
chr1	247588921	.	A	.	.	PASS	END=247588922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:59
chr1	247588923	.	G	.	.	PASS	END=247588924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:33:59
chr1	247588925	.	G	.	.	PASS	END=247588933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:59
chr1	247588934	.	T	.	.	PASS	END=247588943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:59
chr1	247588944	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:12:59
chr1	247588945	.	C	.	.	PASS	END=247588949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:59
chr1	247588950	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:59
chr1	247588951	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:15:59
chr1	247588952	.	T	.	.	PASS	END=247588953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:59
chr1	247592836	.	T	.	.	PASS	END=247592871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr1	247592872	.	C	.	.	PASS	END=247592928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:84:60
chr1	247592929	.	C	.	.	PASS	END=247592971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr1	247592972	.	C	.	.	PASS	END=247593009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr1	247593010	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:99:60
chr1	247593011	.	T	.	.	PASS	END=247593012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:75:60
chr1	247593013	.	G	.	.	PASS	END=247593025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr1	247593026	.	C	.	.	PASS	END=247593037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr1	247593038	.	T	.	.	PASS	END=247593058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	247593059	.	T	.	.	PASS	END=247593062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr1	247593063	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:51:60
chr1	247593064	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:24:60
chr1	247593065	.	C	.	.	PASS	END=247593070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr1	247593071	.	C	.	.	PASS	END=247593083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr1	247593084	.	T	.	.	PASS	END=247593090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr1	247593091	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr1	247593092	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr1	247593093	.	G	.	.	LowGQX	END=247593094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr1	247593095	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr1	247593096	.	C	.	.	LowGQX	END=247593101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	247593102	.	A	.	.	LowGQX	END=247593103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr1	247593104	.	A	.	.	LowGQX	END=247593105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr1	247593106	.	A	.	.	LowGQX	END=247593108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr1	247597354	.	T	.	.	PASS	END=247597358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	247597359	.	G	.	.	PASS	END=247597364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr1	247597365	.	G	A	1156.19	PASS	DP=34;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=34.01;SB=-25.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,34:34:93.29:1189,93,0:60:93:1.000
chr1	247597366	.	T	.	.	PASS	END=247597388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr1	247597389	.	T	.	.	PASS	END=247597403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr1	247597404	.	G	.	.	PASS	END=247597422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	247597423	.	C	.	.	PASS	END=247597453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr1	247597454	.	G	.	.	PASS	END=247597502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr1	247597503	.	C	.	.	PASS	END=247597560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr1	247597561	.	T	.	.	PASS	END=247597600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr1	247597601	.	A	.	.	PASS	END=247597626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr1	247599221	.	G	.	.	PASS	END=247599231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr1	247599232	.	G	A	697.18	LowGQ;LowGQX;SB	BaseQRankSum=0.946;DP=22;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=0.788;QD=31.69;ReadPosRankSum=-0.630;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,21:22:27.06:730,27,0:60:27:0.955
chr1	247599233	.	G	.	.	PASS	END=247599264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr1	247599265	.	A	.	.	PASS	END=247599280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr1	247599281	.	C	.	.	PASS	END=247599305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr1	247599306	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr1	247599307	.	A	.	.	PASS	END=247599320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr1	247599321	.	G	.	.	PASS	END=247599349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr1	247599350	.	A	.	.	PASS	END=247599368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr1	247599369	.	G	.	.	PASS	END=247599470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr1	247599471	.	A	.	.	PASS	END=247599493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	247607223	.	A	.	.	PASS	END=247607240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	247607241	.	G	.	.	PASS	END=247607261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr1	247607262	.	G	.	.	PASS	END=247607386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr1	247607387	.	G	.	.	PASS	END=247607408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr1	247607409	.	A	.	.	PASS	END=247607439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr1	247607440	.	T	.	.	PASS	END=247607466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr1	247607467	.	G	.	.	PASS	END=247607492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr1	247607493	.	G	.	.	PASS	END=247607495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr1	247607902	.	C	.	.	PASS	END=247607938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:78:60
chr1	247607939	.	C	.	.	PASS	END=247607974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr1	247607975	.	T	.	.	PASS	END=247608053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr1	247608054	.	T	.	.	PASS	END=247608084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr1	247608085	.	A	.	.	PASS	END=247608088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr1	247608089	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:46:60
chr1	247608090	.	T	.	.	PASS	END=247608106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr1	247608107	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:54:60
chr1	247608108	.	T	.	.	PASS	END=247608124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr1	247608125	.	T	.	.	PASS	END=247608135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr1	247608136	.	T	.	.	PASS	END=247608143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr1	247608144	.	T	.	.	PASS	END=247608147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr1	247608148	.	C	.	.	PASS	END=247608152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	247608153	.	T	.	.	PASS	END=247608161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr1	247608162	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	247608163	.	A	.	.	PASS	END=247608164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	247608165	.	T	.	.	LowGQX	END=247608166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr1	247608167	.	C	A	51.67	SB	BaseQRankSum=1.377;DP=11;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.382;QD=4.70;ReadPosRankSum=1.106;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:8,3:11:81.67:82,0,247:60:52:0.273
chr1	247608168	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:27:60
chr1	247608169	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr1	247608170	.	A	.	.	LowGQX	END=247608174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	247611656	.	T	.	.	PASS	END=247611664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr1	247611665	.	T	.	.	PASS	END=247611695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr1	247611696	.	T	.	.	PASS	END=247611724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr1	247611725	.	C	.	.	PASS	END=247611806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr1	247611807	.	G	.	.	PASS	END=247611824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr1	247611825	.	C	.	.	PASS	END=247611857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr1	247614329	.	C	.	.	LowGQX	END=247614335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247614336	.	C	.	.	LowGQX	.	GT	./.
chr1	247614337	.	A	.	.	LowGQX	END=247614342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247614343	.	C	.	.	LowGQX	.	GT	./.
chr1	247614344	.	C	.	.	LowGQX	END=247614405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247614406	.	G	.	.	LowGQX	.	GT	./.
chr1	247614407	.	G	.	.	LowGQX	END=247614413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247614414	.	G	.	.	LowGQX	.	GT	./.
chr1	247614415	.	A	.	.	LowGQX	END=247614417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247614418	.	G	.	.	LowGQX	.	GT	./.
chr1	247614419	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247614420	.	G	.	.	LowGQX	.	GT	./.
chr1	247614421	.	A	.	.	LowGQX	END=247614422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247614423	.	T	.	.	LowGQX	END=247614424	GT	./.
chr1	247614425	.	G	.	.	LowGQX	END=247614426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247614427	.	G	.	.	LowGQX	.	GT	./.
chr1	247614428	.	G	.	.	LowGQX	END=247614429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247614430	.	G	.	.	LowGQX	.	GT	./.
chr1	247614431	.	A	.	.	LowGQX	END=247614447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247614448	.	A	.	.	LowGQX	.	GT	./.
chr1	247614449	.	G	.	.	LowGQX	END=247614458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247614459	.	T	.	.	LowGQX	END=247615286	GT	./.
chr1	247654428	.	T	.	.	LowGQX	END=247654566	GT	./.
chr1	247654567	.	C	.	.	LowGQX	END=247654778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247654779	.	T	.	.	LowGQX	END=247654784	GT	./.
chr1	247654785	.	C	.	.	LowGQX	END=247654950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247654951	.	G	.	.	LowGQX	END=247655394	GT	./.
chr1	247690257	.	G	.	.	LowGQX	END=247690356	GT	./.
chr1	247694849	.	C	.	.	LowGQX	END=247695580	GT	./.
chr1	247695581	.	A	.	.	LowGQX	END=247695611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247695612	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	247695613	.	G	.	.	LowGQX	END=247695755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247695756	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	247695757	.	G	.	.	LowGQX	END=247695761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247695762	.	A	.	.	LowGQX	END=247695813	GT	./.
chr1	247701977	.	G	.	.	LowGQX	END=247702093	GT	./.
chr1	247712346	.	G	.	.	LowGQX	END=247712533	GT	./.
chr1	247719689	.	T	.	.	LowGQX	END=247719788	GT	./.
chr1	247726867	.	C	.	.	LowGQX	END=247726966	GT	./.
chr1	247729141	.	T	.	.	LowGQX	END=247729297	GT	./.
chr1	247737443	.	A	.	.	LowGQX	END=247737686	GT	./.
chr1	247751660	.	A	.	.	LowGQX	END=247751669	GT	./.
chr1	247751670	.	G	.	.	LowGQX	END=247751677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751678	.	A	.	.	LowGQX	.	GT	./.
chr1	247751679	.	T	.	.	LowGQX	END=247751706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751707	.	A	.	.	LowGQX	.	GT	./.
chr1	247751708	.	T	.	.	LowGQX	END=247751718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751719	.	T	.	.	LowGQX	.	GT	./.
chr1	247751720	.	T	.	.	LowGQX	END=247751751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751752	.	T	.	.	LowGQX	.	GT	./.
chr1	247751753	.	T	.	.	LowGQX	END=247751760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751761	.	A	.	.	LowGQX	.	GT	./.
chr1	247751762	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751763	.	A	.	.	LowGQX	.	GT	./.
chr1	247751764	.	T	.	.	LowGQX	END=247751765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751766	.	G	.	.	LowGQX	.	GT	./.
chr1	247751767	.	A	.	.	LowGQX	END=247751798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751799	.	C	.	.	LowGQX	.	GT	./.
chr1	247751800	.	A	.	.	LowGQX	END=247751801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247751802	.	C	.	.	LowGQX	.	GT	./.
chr1	247751803	.	A	.	.	LowGQX	END=247751827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751828	.	C	.	.	LowGQX	.	GT	./.
chr1	247751829	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751830	.	A	.	.	LowGQX	.	GT	./.
chr1	247751831	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751832	.	G	.	.	LowGQX	.	GT	./.
chr1	247751833	.	C	.	.	LowGQX	END=247751835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751836	.	C	.	.	LowGQX	.	GT	./.
chr1	247751837	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751838	.	T	.	.	LowGQX	END=247751841	GT	./.
chr1	247751842	.	C	.	.	LowGQX	END=247751844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751845	.	A	.	.	LowGQX	.	GT	./.
chr1	247751846	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751847	.	G	.	.	LowGQX	END=247751848	GT	./.
chr1	247751849	.	A	.	.	LowGQX	END=247751855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751856	.	C	.	.	LowGQX	.	GT	./.
chr1	247751857	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751858	.	T	.	.	LowGQX	.	GT	./.
chr1	247751859	.	T	.	.	LowGQX	END=247751863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751864	.	A	.	.	LowGQX	.	GT	./.
chr1	247751865	.	T	.	.	LowGQX	END=247751866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751867	.	T	.	.	LowGQX	.	GT	./.
chr1	247751868	.	C	.	.	LowGQX	END=247751869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751870	.	C	.	.	LowGQX	END=247751871	GT	./.
chr1	247751872	.	T	.	.	LowGQX	END=247751873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751874	.	C	.	.	LowGQX	.	GT	./.
chr1	247751875	.	C	.	.	LowGQX	END=247751878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751879	.	A	.	.	LowGQX	.	GT	./.
chr1	247751880	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751881	.	C	.	.	LowGQX	END=247751882	GT	./.
chr1	247751883	.	C	.	.	LowGQX	END=247751884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751885	.	G	.	.	LowGQX	.	GT	./.
chr1	247751886	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751887	.	T	.	.	LowGQX	.	GT	./.
chr1	247751888	.	T	.	.	LowGQX	END=247751889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751890	.	A	.	.	LowGQX	.	GT	./.
chr1	247751891	.	C	.	.	LowGQX	END=247751896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751897	.	G	.	.	LowGQX	.	GT	./.
chr1	247751898	.	T	.	.	LowGQX	END=247751906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247751907	.	C	.	.	LowGQX	.	GT	./.
chr1	247751908	.	C	.	.	LowGQX	END=247751912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247751913	.	C	.	.	LowGQX	.	GT	./.
chr1	247751914	.	C	.	.	LowGQX	END=247751915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247751916	.	G	.	.	LowGQX	.	GT	./.
chr1	247751917	.	G	.	.	LowGQX	END=247751919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247751920	.	A	.	.	LowGQX	.	GT	./.
chr1	247751921	.	A	.	.	LowGQX	END=247751925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751926	.	T	.	.	LowGQX	.	GT	./.
chr1	247751927	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247751928	.	G	.	.	LowGQX	.	GT	./.
chr1	247751929	.	G	.	.	LowGQX	END=247751930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	247751931	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	247751932	.	C	.	.	LowGQX	END=247751938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247751939	.	A	.	.	LowGQX	.	GT	./.
chr1	247751940	.	A	.	.	LowGQX	END=247751961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247751962	.	T	.	.	LowGQX	.	GT	./.
chr1	247751963	.	T	.	.	LowGQX	END=247751965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	247751966	.	T	.	.	LowGQX	.	GT	./.
chr1	247751967	.	T	.	.	LowGQX	END=247752018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247752019	.	G	C	44.20	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=22.10;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:75,6,0:60:6:1.000
chr1	247752020	.	T	.	.	LowGQX	END=247752046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752047	.	T	.	.	LowGQX	.	GT	./.
chr1	247752048	.	C	.	.	LowGQX	END=247752078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752079	.	C	.	.	LowGQX	END=247752146	GT	./.
chr1	247752147	.	G	.	.	LowGQX	END=247752150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752151	.	A	.	.	LowGQX	.	GT	./.
chr1	247752152	.	C	.	.	LowGQX	END=247752163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752164	.	A	.	.	LowGQX	.	GT	./.
chr1	247752165	.	G	.	.	LowGQX	END=247752177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752178	.	G	.	.	LowGQX	.	GT	./.
chr1	247752179	.	G	.	.	LowGQX	END=247752201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752202	.	A	.	.	LowGQX	.	GT	./.
chr1	247752203	.	T	.	.	LowGQX	END=247752208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752209	.	A	.	.	LowGQX	.	GT	./.
chr1	247752210	.	G	.	.	LowGQX	END=247752216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752217	.	G	.	.	LowGQX	.	GT	./.
chr1	247752218	.	T	.	.	LowGQX	END=247752243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752244	.	A	.	.	LowGQX	.	GT	./.
chr1	247752245	.	C	.	.	LowGQX	END=247752247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752248	.	C	.	.	LowGQX	.	GT	./.
chr1	247752249	.	G	.	.	LowGQX	END=247752250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752251	.	T	.	.	LowGQX	.	GT	./.
chr1	247752252	.	T	.	.	LowGQX	END=247752255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752256	.	G	.	.	LowGQX	END=247752257	GT	./.
chr1	247752258	.	G	.	.	LowGQX	END=247752265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752266	.	T	.	.	LowGQX	.	GT	./.
chr1	247752267	.	T	.	.	LowGQX	END=247752272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752273	.	G	.	.	LowGQX	.	GT	./.
chr1	247752274	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752275	.	C	.	.	LowGQX	.	GT	./.
chr1	247752276	.	T	.	.	LowGQX	END=247752280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752281	.	T	.	.	LowGQX	.	GT	./.
chr1	247752282	.	C	.	.	LowGQX	END=247752287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752288	.	C	.	.	LowGQX	END=247752289	GT	./.
chr1	247752290	.	T	.	.	LowGQX	END=247752291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752292	.	A	.	.	LowGQX	.	GT	./.
chr1	247752293	.	T	.	.	LowGQX	END=247752297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752298	.	C	.	.	LowGQX	END=247752357	GT	./.
chr1	247752358	.	T	.	.	LowGQX	END=247752367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752368	.	G	.	.	LowGQX	.	GT	./.
chr1	247752369	.	G	.	.	LowGQX	END=247752372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752373	.	C	.	.	LowGQX	.	GT	./.
chr1	247752374	.	A	.	.	LowGQX	END=247752377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752378	.	A	.	.	LowGQX	.	GT	./.
chr1	247752379	.	G	.	.	LowGQX	END=247752381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752382	.	T	.	.	LowGQX	END=247752383	GT	./.
chr1	247752384	.	C	.	.	LowGQX	END=247752385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752386	.	G	.	.	LowGQX	.	GT	./.
chr1	247752387	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752388	.	A	.	.	LowGQX	.	GT	./.
chr1	247752389	.	C	.	.	LowGQX	END=247752404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752405	.	G	.	.	LowGQX	.	GT	./.
chr1	247752406	.	A	.	.	LowGQX	END=247752411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752412	.	G	.	.	LowGQX	.	GT	./.
chr1	247752413	.	T	.	.	LowGQX	END=247752431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752432	.	C	.	.	LowGQX	.	GT	./.
chr1	247752433	.	A	.	.	LowGQX	END=247752434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752435	.	C	.	.	LowGQX	.	GT	./.
chr1	247752436	.	A	.	.	LowGQX	END=247752506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247752507	.	T	.	.	LowGQX	END=247752617	GT	./.
chr1	247768886	.	G	.	.	LowGQX	END=247769765	GT	./.
chr1	247769766	.	G	.	.	LowGQX	END=247769819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247835418	.	T	.	.	PASS	END=247835524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr1	247835525	.	T	.	.	PASS	END=247835532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr1	247835533	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:2:60
chr1	247835534	.	C	.	.	PASS	END=247835562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	247835563	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	247835564	.	A	.	.	PASS	END=247835580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	247835581	.	T	.	.	LowGQX	END=247835607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	247835608	.	T	.	.	LowGQX	END=247835609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr1	247835610	.	A	.	.	LowGQX	END=247835643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr1	247835644	.	C	.	.	LowGQX	END=247835661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr1	247835662	.	C	.	.	LowGQX	END=247835667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	247835668	.	G	.	.	LowGQX	END=247835673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	247835674	.	G	A	47.39	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=23.69;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:79,6,0:60:6:1.000
chr1	247835675	.	G	.	.	LowGQX	END=247835695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247835696	.	A	.	.	LowGQX	END=247835705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	247835706	.	A	.	.	LowGQX	END=247835717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247835718	.	A	.	.	LowGQX	END=247835720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	247835721	.	A	.	.	LowGQX	END=247835723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	247835724	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	247835725	.	C	.	.	LowGQX	END=247835743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247835744	.	A	.	.	LowGQX	END=247835748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	247835749	.	C	.	.	LowGQX	END=247835750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	247835751	.	A	.	.	LowGQX	END=247835775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	247835776	.	T	.	.	LowGQX	END=247835778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247835779	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	247835780	.	A	.	.	LowGQX	END=247835790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247835791	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	247835792	.	C	.	.	LowGQX	END=247835828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247835829	.	T	.	.	LowGQX	END=247835897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247835898	.	G	.	.	LowGQX	.	GT	./.
chr1	247835899	.	C	.	.	LowGQX	END=247835900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247835901	.	A	.	.	LowGQX	END=247835902	GT	./.
chr1	247835903	.	A	.	.	LowGQX	END=247835921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247835922	.	A	.	.	LowGQX	.	GT	./.
chr1	247835923	.	A	.	.	LowGQX	END=247835926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247835927	.	T	.	.	LowGQX	.	GT	./.
chr1	247835928	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247835929	.	C	.	.	LowGQX	.	GT	./.
chr1	247835930	.	A	.	.	LowGQX	END=247835932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247835933	.	C	.	.	LowGQX	END=247835941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247835942	.	G	.	.	LowGQX	END=247835949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	247835950	.	T	C	75.92	LowGQ;LowGQX	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.727;QD=18.98;ReadPosRankSum=-0.727;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,3:4:27.28:106,0,27:60:27:0.750
chr1	247835951	.	A	.	.	LowGQX	END=247835967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	247835968	.	G	.	.	LowGQX	END=247835990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	247835991	.	T	.	.	LowGQX	END=247836005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	247836006	.	G	.	.	LowGQX	END=247836007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	247836008	.	G	.	16.43	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.18:60:0
chr1	247836009	.	A	.	.	LowGQX	END=247836014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	247836015	.	A	.	.	LowGQX	END=247836016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	247836017	.	C	.	.	LowGQX	END=247836021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	247836022	.	C	A	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.727;QD=1.24;ReadPosRankSum=0.727;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,1:4:33.30:33,0,33:60:5:0.250
chr1	247836023	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	247836024	.	G	.	.	LowGQX	END=247836032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	247836033	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr1	247836034	.	A	.	.	LowGQX	END=247836050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	247836051	.	A	.	.	LowGQX	END=247836052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	247836053	.	C	.	.	LowGQX	END=247836063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	247836064	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr1	247836065	.	G	.	.	LowGQX	END=247836083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	247836084	.	T	.	.	LowGQX	END=247836092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247836093	.	G	.	.	LowGQX	.	GT	./.
chr1	247836094	.	T	.	.	LowGQX	END=247836121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247836122	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	247836123	.	A	.	.	LowGQX	END=247836124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247836125	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	247836126	.	C	.	.	LowGQX	END=247836179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247836180	.	G	.	.	LowGQX	END=247836182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	247836183	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr1	247836184	.	T	.	.	LowGQX	END=247836189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr1	247836190	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr1	247836191	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr1	247836192	.	G	.	.	LowGQX	END=247836193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr1	247836194	.	G	.	.	LowGQX	END=247836195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr1	247836196	.	T	.	.	LowGQX	END=247836202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr1	247836203	.	G	.	.	PASS	END=247836206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr1	247836207	.	T	A	54.67	SB	BaseQRankSum=0.740;DP=12;Dels=0.00;FS=3.090;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-0.740;QD=4.56;ReadPosRankSum=-2.589;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:9,3:12:84.66:85,0,250:60:55:0.250
chr1	247836208	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr1	247836209	.	G	.	.	LowGQX	END=247836214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr1	247836215	.	G	.	.	PASS	END=247836216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	247836217	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	247836218	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr1	247836219	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr1	247836220	.	T	.	.	PASS	END=247836235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr1	247836236	.	A	.	.	PASS	END=247836237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr1	247836238	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr1	247836239	.	A	.	.	PASS	END=247836264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	247836265	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:60
chr1	247836266	.	G	.	.	PASS	END=247836284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chr1	247836285	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:60
chr1	247836286	.	G	.	.	PASS	END=247836327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr1	247836328	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:2:60
chr1	247836329	.	A	.	.	PASS	END=247836333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr1	247836334	.	T	.	.	PASS	END=247836345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr1	247875129	.	A	.	.	LowGQX	END=247875400	GT	./.
chr1	247875401	.	C	.	.	LowGQX	END=247875577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247875578	.	T	.	.	LowGQX	END=247876059	GT	./.
chr1	247886400	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247886401	.	T	.	.	LowGQX	.	GT	./.
chr1	247886402	.	T	.	.	LowGQX	END=247886415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247886416	.	C	.	.	LowGQX	END=247886417	GT	./.
chr1	247886418	.	C	.	.	LowGQX	END=247886470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247886471	.	T	.	.	LowGQX	.	GT	./.
chr1	247886472	.	T	.	.	LowGQX	END=247886493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247886494	.	G	.	.	LowGQX	.	GT	./.
chr1	247886495	.	T	.	.	LowGQX	END=247886515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247886516	.	G	.	.	LowGQX	.	GT	./.
chr1	247886517	.	T	.	.	LowGQX	END=247886537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247886538	.	T	.	.	LowGQX	.	GT	./.
chr1	247886539	.	G	.	.	LowGQX	END=247886541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247886542	.	A	.	.	LowGQX	.	GT	./.
chr1	247886543	.	A	.	.	LowGQX	END=247886547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247886548	.	A	.	.	LowGQX	END=247886749	GT	./.
chr1	247886750	.	C	.	.	LowGQX	END=247886880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247886881	.	A	.	.	LowGQX	END=247887345	GT	./.
chr1	247901916	.	T	.	.	LowGQX	END=247902861	GT	./.
chr1	247920762	.	C	.	.	LowGQX	END=247920772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247920773	.	C	.	.	LowGQX	.	GT	./.
chr1	247920774	.	T	.	.	LowGQX	END=247920893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247920894	.	G	.	.	LowGQX	END=247921072	GT	./.
chr1	247921073	.	G	.	.	LowGQX	END=247921099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247921100	.	T	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	247921101	.	C	.	.	LowGQX	END=247921224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247921225	.	G	.	.	LowGQX	END=247921710	GT	./.
chr1	247978100	.	T	.	.	LowGQX	END=247978286	GT	./.
chr1	247978287	.	G	.	.	LowGQX	END=247978303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247978304	.	A	.	.	LowGQX	.	GT	./.
chr1	247978305	.	A	.	.	LowGQX	END=247978318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247978319	.	A	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	247978320	.	T	.	.	LowGQX	END=247978383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	247978384	.	A	.	.	LowGQX	END=247978641	GT	./.
chr1	247978642	.	A	.	.	LowGQX	END=247978648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247978649	.	A	.	.	LowGQX	.	GT	./.
chr1	247978650	.	G	.	.	LowGQX	END=247978672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247978673	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	247978674	.	G	.	.	LowGQX	END=247978735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247978736	.	A	.	.	LowGQX	.	GT	./.
chr1	247978737	.	C	.	.	LowGQX	END=247978742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247978743	.	A	.	.	LowGQX	.	GT	./.
chr1	247978744	.	A	.	.	LowGQX	END=247978792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247978793	.	A	.	.	LowGQX	END=247978929	GT	./.
chr1	247978930	.	C	.	.	LowGQX	END=247978957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247978958	.	T	.	.	LowGQX	.	GT	./.
chr1	247978959	.	G	.	.	LowGQX	END=247978995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	247978996	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	247978997	.	A	.	.	LowGQX	END=247979033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248004228	.	A	.	.	LowGQX	END=248004629	GT	./.
chr1	248004630	.	G	.	.	LowGQX	END=248004686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248004687	.	C	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	248004688	.	G	.	.	LowGQX	END=248004733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248004734	.	T	.	.	LowGQX	END=248005200	GT	./.
chr1	248020547	.	T	.	.	LowGQX	END=248020975	GT	./.
chr1	248023917	.	A	.	.	LowGQX	END=248024016	GT	./.
chr1	248028005	.	A	.	.	LowGQX	END=248028239	GT	./.
chr1	248031109	.	A	.	.	LowGQX	END=248031208	GT	./.
chr1	248031263	.	A	.	.	LowGQX	END=248031367	GT	./.
chr1	248039200	.	A	.	.	LowGQX	END=248039275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248039276	.	G	.	.	LowGQX	END=248039793	GT	./.
chr1	248058887	.	A	.	.	LowGQX	END=248059503	GT	./.
chr1	248059504	.	G	.	.	LowGQX	END=248059515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248059516	.	C	.	.	LowGQX	.	GT	./.
chr1	248059517	.	C	.	.	LowGQX	END=248059522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248059523	.	T	.	.	LowGQX	.	GT	./.
chr1	248059524	.	G	.	.	LowGQX	END=248059551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248059552	.	G	.	.	LowGQX	.	GT	./.
chr1	248059553	.	T	.	.	LowGQX	END=248059560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248059561	.	G	.	.	LowGQX	.	GT	./.
chr1	248059562	.	T	.	.	LowGQX	END=248059572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248059573	.	C	.	.	LowGQX	.	GT	./.
chr1	248059574	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248059575	.	G	.	.	LowGQX	.	GT	./.
chr1	248059576	.	T	.	.	LowGQX	END=248059578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248059579	.	G	.	.	LowGQX	.	GT	./.
chr1	248059580	.	C	.	.	LowGQX	END=248059584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248059585	.	G	.	.	LowGQX	.	GT	./.
chr1	248059586	.	G	.	.	LowGQX	END=248059606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248059607	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248059608	.	C	.	.	LowGQX	END=248059656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248059657	.	T	.	.	LowGQX	.	GT	./.
chr1	248059658	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248059659	.	C	.	.	LowGQX	.	GT	./.
chr1	248059660	.	A	.	.	LowGQX	END=248059664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248059665	.	C	.	.	LowGQX	.	GT	./.
chr1	248059666	.	A	.	.	LowGQX	END=248059688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248059689	.	C	.	.	LowGQX	END=248059690	GT	./.
chr1	248059691	.	A	.	.	LowGQX	END=248059697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248059698	.	G	.	.	LowGQX	.	GT	./.
chr1	248059699	.	G	.	.	LowGQX	END=248059702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248059703	.	T	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	248059704	.	G	.	.	LowGQX	END=248059711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248059712	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	248059713	.	G	.	.	LowGQX	END=248059748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248059749	.	T	.	.	LowGQX	END=248059835	GT	./.
chr1	248084318	.	T	.	.	LowGQX	END=248084821	GT	./.
chr1	248084822	.	G	.	.	LowGQX;LowMQ	END=248084970	GT	./.
chr1	248084971	.	C	.	.	LowGQX	END=248085032	GT	./.
chr1	248085033	.	C	.	.	LowGQX;LowMQ	END=248085183	GT	./.
chr1	248085184	.	A	.	.	LowGQX	END=248085260	GT	./.
chr1	248097070	.	G	.	.	LowGQX	END=248098057	GT	./.
chr1	248112158	.	C	.	.	LowGQX	END=248112304	GT	./.
chr1	248112305	.	T	.	.	LowGQX	END=248112321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112322	.	C	.	.	LowGQX	.	GT	./.
chr1	248112323	.	A	.	.	LowGQX	END=248112327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112328	.	C	.	.	LowGQX	.	GT	./.
chr1	248112329	.	C	.	.	LowGQX	END=248112333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112334	.	T	.	.	LowGQX	.	GT	./.
chr1	248112335	.	A	.	.	LowGQX	END=248112337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112338	.	T	.	.	LowGQX	.	GT	./.
chr1	248112339	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112340	.	C	.	.	LowGQX	.	GT	./.
chr1	248112341	.	T	.	.	LowGQX	END=248112354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112355	.	T	.	.	LowGQX	.	GT	./.
chr1	248112356	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112357	.	C	.	.	LowGQX	END=248112358	GT	./.
chr1	248112359	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112360	.	C	.	.	LowGQX	.	GT	./.
chr1	248112361	.	A	.	.	LowGQX	END=248112363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112364	.	G	.	.	LowGQX	.	GT	./.
chr1	248112365	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112366	.	C	.	.	LowGQX	END=248112367	GT	./.
chr1	248112368	.	T	.	.	LowGQX	END=248112378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112379	.	T	.	.	LowGQX	.	GT	./.
chr1	248112380	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112381	.	C	.	.	LowGQX	.	GT	./.
chr1	248112382	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112383	.	C	.	.	LowGQX	END=248112384	GT	./.
chr1	248112385	.	A	.	.	LowGQX	END=248112390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112391	.	C	.	.	LowGQX	.	GT	./.
chr1	248112392	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112393	.	T	.	.	LowGQX	.	GT	./.
chr1	248112394	.	A	.	.	LowGQX	END=248112398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112399	.	G	.	.	LowGQX	.	GT	./.
chr1	248112400	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112401	.	C	.	.	LowGQX	.	GT	./.
chr1	248112402	.	A	.	.	LowGQX	END=248112404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112405	.	T	.	.	LowGQX	.	GT	./.
chr1	248112406	.	G	.	.	LowGQX	END=248112425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248112426	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248112427	.	T	.	.	LowGQX	END=248112441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248112442	.	G	.	.	LowGQX	.	GT	./.
chr1	248112443	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248112444	.	G	.	.	LowGQX	.	GT	./.
chr1	248112445	.	T	.	.	LowGQX	END=248112453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248112454	.	C	.	.	LowGQX	.	GT	./.
chr1	248112455	.	A	.	.	LowGQX	END=248112482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248112483	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248112484	.	G	.	.	LowGQX	END=248112504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248112505	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	248112506	.	C	.	.	LowGQX	END=248112626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112627	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	248112628	.	G	.	.	LowGQX	END=248112635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248112636	.	T	.	.	LowGQX	END=248113100	GT	./.
chr1	248128632	.	A	.	.	LowGQX	END=248129453	GT	./.
chr1	248129454	.	A	.	.	LowGQX	END=248129642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248129643	.	T	.	.	LowGQX	END=248129651	GT	./.
chr1	248153813	.	A	.	.	LowGQX	.	GT	./.
chr1	248153814	.	T	.	.	LowGQX	END=248153817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248153818	.	T	.	.	LowGQX	.	GT	./.
chr1	248153819	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248153820	.	T	.	.	LowGQX	.	GT	./.
chr1	248153821	.	T	.	.	LowGQX	END=248153827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248153828	.	G	.	.	LowGQX	.	GT	./.
chr1	248153829	.	G	.	.	LowGQX	END=248153833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248153834	.	A	.	.	LowGQX	.	GT	./.
chr1	248153835	.	A	.	.	LowGQX	END=248153839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248153840	.	A	.	.	LowGQX	.	GT	./.
chr1	248153841	.	T	.	.	LowGQX	END=248153858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248153859	.	G	.	.	LowGQX	.	GT	./.
chr1	248153860	.	G	.	.	LowGQX	END=248153862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248153863	.	T	.	.	LowGQX	.	GT	./.
chr1	248153864	.	C	.	.	LowGQX	END=248153885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248153886	.	T	.	.	LowGQX	.	GT	./.
chr1	248153887	.	A	.	.	LowGQX	END=248153919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248153920	.	G	.	.	LowGQX	.	GT	./.
chr1	248153921	.	G	.	.	LowGQX	END=248153964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248153965	.	C	.	.	LowGQX	END=248154110	GT	./.
chr1	248154111	.	C	.	.	LowGQX	END=248154120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248154121	.	G	.	.	LowGQX	.	GT	./.
chr1	248154122	.	A	.	.	LowGQX	END=248154128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248154129	.	C	.	.	LowGQX	.	GT	./.
chr1	248154130	.	C	.	.	LowGQX	END=248154137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248154138	.	A	.	.	LowGQX	.	GT	./.
chr1	248154139	.	T	.	.	LowGQX	END=248154145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248154146	.	G	.	.	LowGQX	.	GT	./.
chr1	248154147	.	T	.	.	LowGQX	END=248154174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248154175	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248154176	.	A	.	.	LowGQX	END=248154272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248154273	.	A	.	.	LowGQX	.	GT	./.
chr1	248154274	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248154275	.	G	.	.	LowGQX	.	GT	./.
chr1	248154276	.	C	.	.	LowGQX	END=248154284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248154285	.	C	.	.	LowGQX	.	GT	./.
chr1	248154286	.	C	.	.	LowGQX	END=248154299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248154300	.	T	.	.	LowGQX	END=248154493	GT	./.
chr1	248185249	.	C	.	.	LowGQX	END=248186083	GT	./.
chr1	248186084	.	A	.	.	LowGQX	END=248186085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248186086	.	C	.	.	LowGQX	.	GT	./.
chr1	248186087	.	C	.	.	LowGQX	END=248186088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248186089	.	C	.	.	LowGQX	.	GT	./.
chr1	248186090	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248186091	.	C	.	.	LowGQX	.	GT	./.
chr1	248186092	.	C	.	.	LowGQX	END=248186100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248186101	.	C	.	.	LowGQX	.	GT	./.
chr1	248186102	.	A	.	.	LowGQX	END=248186174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248186175	.	C	.	.	LowGQX	END=248186176	GT	./.
chr1	248186177	.	G	.	.	LowGQX	END=248186188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248201568	.	C	.	.	LowGQX	END=248201789	GT	./.
chr1	248201790	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201791	.	C	.	.	LowGQX	END=248201793	GT	./.
chr1	248201794	.	C	.	.	LowGQX	END=248201797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201798	.	G	.	.	LowGQX	.	GT	./.
chr1	248201799	.	T	.	.	LowGQX	END=248201800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201801	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	248201802	.	C	.	.	LowGQX	END=248201805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201806	.	G	.	.	LowGQX	.	GT	./.
chr1	248201807	.	A	.	.	LowGQX	END=248201808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201809	.	G	.	.	LowGQX	END=248201810	GT	./.
chr1	248201811	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201812	.	T	.	.	LowGQX	END=248201814	GT	./.
chr1	248201815	.	T	.	.	LowGQX	END=248201817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201818	.	T	.	.	LowGQX	.	GT	./.
chr1	248201819	.	T	.	.	LowGQX	END=248201821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201822	.	C	.	.	LowGQX	.	GT	./.
chr1	248201823	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201824	.	G	.	.	LowGQX	.	GT	./.
chr1	248201825	.	T	.	.	LowGQX	END=248201826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201827	.	T	.	.	LowGQX	END=248201829	GT	./.
chr1	248201830	.	A	.	.	LowGQX	END=248201832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201833	.	C	.	.	LowGQX	.	GT	./.
chr1	248201834	.	A	.	.	LowGQX	END=248201838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201839	.	T	.	.	LowGQX	.	GT	./.
chr1	248201840	.	A	.	.	LowGQX	END=248201841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201842	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr1	248201843	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201844	.	C	.	.	LowGQX	.	GT	./.
chr1	248201845	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201846	.	T	.	.	LowGQX	.	GT	./.
chr1	248201847	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201848	.	C	.	.	LowGQX	.	GT	./.
chr1	248201849	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201850	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	248201851	.	T	.	.	LowGQX	END=248201853	GT	./.
chr1	248201854	.	A	.	.	LowGQX	END=248201855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201856	.	G	.	.	LowGQX	.	GT	./.
chr1	248201857	.	T	.	.	LowGQX	END=248201858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201859	.	G	.	.	LowGQX	END=248201860	GT	./.
chr1	248201861	.	A	.	.	LowGQX	END=248201862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201863	.	T	.	.	LowGQX	END=248201866	GT	./.
chr1	248201867	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201868	.	G	.	.	LowGQX	.	GT	./.
chr1	248201869	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201870	.	T	.	.	LowGQX	END=248201872	GT	./.
chr1	248201873	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201874	.	T	.	.	LowGQX	END=248201875	GT	./.
chr1	248201876	.	T	.	.	LowGQX	END=248201878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201879	.	T	.	.	LowGQX	END=248201884	GT	./.
chr1	248201885	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201886	.	T	.	.	LowGQX	END=248201889	GT	./.
chr1	248201890	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201891	.	G	.	.	LowGQX	.	GT	./.
chr1	248201892	.	T	.	.	LowGQX	END=248201919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248201920	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248201921	.	G	.	.	LowGQX	END=248201964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248201965	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248201966	.	A	.	.	LowGQX	END=248202035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248202036	.	G	.	.	LowGQX	END=248202044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	248202045	.	C	.	.	LowGQX	END=248202058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr1	248202059	.	T	.	.	LowGQX	END=248202077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr1	248202078	.	C	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:5:9.03:60:9
chr1	248202079	.	C	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	248202080	.	A	.	.	LowGQX	END=248202083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	248202084	.	C	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	248202085	.	C	.	.	LowGQX	END=248202112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	248202113	.	G	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr1	248202114	.	C	.	.	LowGQX	END=248202117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	248202118	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr1	248202119	.	T	.	.	LowGQX	END=248202138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	248202139	.	C	.	39.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.02:60:9
chr1	248202140	.	A	.	.	LowGQX	END=248202143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	248202144	.	G	.	13.52	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.09:60:0
chr1	248202145	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr1	248202146	.	G	T	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.8832;MQ=60;MQ0=0;MQRankSum=0.727;QD=0.79;ReadPosRankSum=0.727;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,1:4:30.29:30,0,66:60:3:0.250
chr1	248202147	.	T	.	.	LowGQX	END=248202150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	248202151	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr1	248202152	.	G	.	.	LowGQX	END=248202171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr1	248202172	.	C	.	24.67	LowGQX	DP=6;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:6:1.11:60:1
chr1	248202173	.	A	.	.	LowGQX	END=248202184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:60
chr1	248202185	.	C	.	36	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.01:60:6
chr1	248202186	.	T	.	.	LowGQX	END=248202194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr1	248202195	.	C	.	39.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.02:60:9
chr1	248202196	.	T	.	.	LowGQX	END=248202198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr1	248202199	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	248202200	.	A	.	.	LowGQX	END=248202221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	248202222	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	248202223	.	C	.	.	LowGQX	END=248202224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248202225	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248202226	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248202227	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248202228	.	T	.	.	LowGQX	END=248202229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248202230	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248202231	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	248202232	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248202233	.	C	.	.	LowGQX	END=248202244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248202245	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248202246	.	G	.	.	LowGQX	END=248202249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248202250	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248202251	.	C	.	.	LowGQX	END=248202259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248202260	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248202261	.	A	.	.	LowGQX	END=248202291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248202292	.	C	G	3.07	LowGQX;LowQD;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=1.53;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:30,0,33:60:3:0.500
chr1	248202293	.	A	.	.	LowGQX	END=248202297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr1	248202298	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248202299	.	C	.	.	LowGQX	END=248202311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248202312	.	C	.	.	LowGQX	END=248202403	GT	./.
chr1	248202404	.	A	.	.	LowGQX	END=248202412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248202413	.	C	.	.	LowGQX	.	GT	./.
chr1	248202414	.	C	.	.	LowGQX	END=248202421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248202422	.	A	.	.	LowGQX	.	GT	./.
chr1	248202423	.	A	.	.	LowGQX	END=248202430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248202431	.	A	.	.	LowGQX	.	GT	./.
chr1	248202432	.	T	.	.	LowGQX	END=248202438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248202439	.	C	.	.	LowGQX	.	GT	./.
chr1	248202440	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248202441	.	T	.	.	LowGQX	.	GT	./.
chr1	248202442	.	G	.	.	LowGQX	END=248202444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248202445	.	A	.	.	LowGQX	.	GT	./.
chr1	248202446	.	A	.	.	LowGQX	END=248202455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248202456	.	T	.	.	LowGQX	.	GT	./.
chr1	248202457	.	G	.	.	LowGQX	END=248202460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248202461	.	G	.	.	LowGQX	.	GT	./.
chr1	248202462	.	G	.	.	LowGQX	END=248202467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248202468	.	T	.	.	LowGQX	.	GT	./.
chr1	248202469	.	G	.	.	LowGQX	END=248202477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248202478	.	G	.	.	LowGQX	.	GT	./.
chr1	248202479	.	A	.	.	LowGQX	END=248202499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248202500	.	A	.	.	LowGQX	.	GT	./.
chr1	248202501	.	A	.	.	LowGQX	END=248202504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248202505	.	G	.	.	LowGQX	.	GT	./.
chr1	248202506	.	T	.	.	LowGQX	END=248202510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248223982	.	C	.	.	LowGQX	END=248224924	GT	./.
chr1	248262676	.	T	.	.	LowGQX	END=248262762	GT	./.
chr1	248262763	.	T	.	.	LowGQX	END=248262904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248262905	.	C	.	.	LowGQX	END=248263585	GT	./.
chr1	248263586	.	G	.	.	LowGQX	END=248263618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248285438	.	A	.	.	LowGQX	END=248286067	GT	./.
chr1	248286068	.	A	.	.	LowGQX	END=248286073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248286074	.	C	.	.	LowGQX	.	GT	./.
chr1	248286075	.	T	.	.	LowGQX	END=248286082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248308448	.	T	.	.	LowGQX	END=248308455	GT	./.
chr1	248308456	.	T	.	.	LowGQX	END=248308457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248308458	.	G	.	.	LowGQX	.	GT	./.
chr1	248308459	.	G	.	.	LowGQX	END=248308460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248308461	.	G	.	.	LowGQX	END=248308462	GT	./.
chr1	248308463	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248308464	.	T	.	.	LowGQX	.	GT	./.
chr1	248308465	.	C	.	.	LowGQX	END=248308466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248308467	.	G	.	.	LowGQX	.	GT	./.
chr1	248308468	.	A	.	.	LowGQX	END=248308469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248308470	.	C	.	.	LowGQX	.	GT	./.
chr1	248308471	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248308472	.	T	.	.	LowGQX	.	GT	./.
chr1	248308473	.	C	.	.	LowGQX	END=248308474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248308475	.	A	.	.	LowGQX	.	GT	./.
chr1	248308476	.	C	.	.	LowGQX	END=248308492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248308493	.	T	.	.	LowGQX	.	GT	./.
chr1	248308494	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248308495	.	G	.	.	LowGQX	.	GT	./.
chr1	248308496	.	G	.	.	LowGQX	END=248308502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248308503	.	C	.	.	LowGQX	.	GT	./.
chr1	248308504	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248308505	.	A	.	.	LowGQX	.	GT	./.
chr1	248308506	.	T	.	.	LowGQX	END=248308526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248308527	.	C	.	.	LowGQX	.	GT	./.
chr1	248308528	.	C	.	.	LowGQX	END=248308530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248308531	.	T	.	.	LowGQX	.	GT	./.
chr1	248308532	.	T	.	.	LowGQX	END=248308534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248308535	.	T	.	.	LowGQX	.	GT	./.
chr1	248308536	.	T	.	.	LowGQX	END=248308540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248308541	.	T	.	.	LowGQX	.	GT	./.
chr1	248308542	.	C	.	.	LowGQX	END=248308558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248308559	.	T	.	.	LowGQX	.	GT	./.
chr1	248308560	.	G	.	.	LowGQX	END=248308605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248308606	.	A	.	.	LowGQX	END=248308906	GT	./.
chr1	248308907	.	C	.	.	LowGQX	END=248309150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248309151	.	T	.	.	LowGQX	.	GT	./.
chr1	248309152	.	C	.	.	LowGQX	END=248309166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248309167	.	A	.	.	LowGQX	END=248309390	GT	./.
chr1	248343286	.	T	.	.	LowGQX	END=248343295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248343296	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248343297	.	G	.	.	LowGQX	END=248343326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248343327	.	C	.	.	LowGQX	.	GT	./.
chr1	248343328	.	T	.	.	LowGQX	END=248343333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248343334	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	248343335	.	A	.	.	LowGQX	END=248343337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248343338	.	C	.	.	LowGQX	END=248343339	GT	./.
chr1	248343340	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248343341	.	C	.	.	LowGQX	.	GT	./.
chr1	248343342	.	A	.	.	LowGQX	END=248343349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248343350	.	C	.	.	LowGQX	.	GT	./.
chr1	248343351	.	C	.	.	LowGQX	END=248343363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248343364	.	T	.	.	LowGQX	END=248343365	GT	./.
chr1	248343366	.	C	.	.	LowGQX	END=248343377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248343378	.	G	.	.	LowGQX	.	GT	./.
chr1	248343379	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248343380	.	C	.	.	LowGQX	.	GT	./.
chr1	248343381	.	C	.	.	LowGQX	END=248343384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248343385	.	G	.	.	LowGQX	.	GT	./.
chr1	248343386	.	C	.	.	LowGQX	END=248343396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248343397	.	T	.	.	LowGQX	END=248344302	GT	./.
chr1	248344303	.	T	.	.	LowGQX	END=248344333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248366368	.	T	.	.	LowGQX	END=248366689	GT	./.
chr1	248366690	.	G	.	.	LowGQX	END=248366701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248366702	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr1	248366703	.	T	.	.	LowGQX	END=248366713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248366714	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248366715	.	G	.	.	LowGQX	END=248366751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248366752	.	A	.	.	LowGQX	.	GT	./.
chr1	248366753	.	C	.	.	LowGQX	END=248366813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248366814	.	T	.	.	LowGQX	END=248367310	GT	./.
chr1	248402229	.	G	.	.	LowGQX	END=248402330	GT	./.
chr1	248402331	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402332	.	C	.	.	LowGQX	.	GT	./.
chr1	248402333	.	T	.	.	LowGQX	END=248402341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402342	.	G	.	.	LowGQX	END=248402343	GT	./.
chr1	248402344	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402345	.	T	.	.	LowGQX	END=248402347	GT	./.
chr1	248402348	.	A	.	.	LowGQX	END=248402349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402350	.	G	.	.	LowGQX	.	GT	./.
chr1	248402351	.	G	.	.	LowGQX	END=248402365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402366	.	G	.	.	LowGQX	.	GT	./.
chr1	248402367	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402368	.	T	.	.	LowGQX	.	GT	./.
chr1	248402369	.	C	.	.	LowGQX	END=248402371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402372	.	C	.	.	LowGQX	.	GT	./.
chr1	248402373	.	T	.	.	LowGQX	END=248402375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402376	.	T	.	.	LowGQX	END=248402377	GT	./.
chr1	248402378	.	T	.	.	LowGQX	END=248402383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402384	.	G	.	.	LowGQX	.	GT	./.
chr1	248402385	.	A	.	.	LowGQX	END=248402387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402388	.	A	.	.	LowGQX	.	GT	./.
chr1	248402389	.	A	.	.	LowGQX	END=248402391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248402392	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248402393	.	C	.	.	LowGQX	END=248402395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248402396	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr1	248402397	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248402398	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248402399	.	A	.	.	LowGQX	.	GT	./.
chr1	248402400	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248402401	.	C	.	.	LowGQX	.	GT	./.
chr1	248402402	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248402403	.	C	.	.	LowGQX	END=248402404	GT	./.
chr1	248402405	.	A	.	.	LowGQX	END=248402409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248402410	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	248402411	.	T	.	.	LowGQX	END=248402415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	248402416	.	C	.	.	LowGQX	.	GT	./.
chr1	248402417	.	C	.	.	LowGQX	END=248402423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	248402424	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	248402425	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	248402426	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	248402427	.	T	.	.	LowGQX	END=248402430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	248402431	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	248402432	.	C	.	.	LowGQX	END=248402442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	248402443	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	248402444	.	A	.	.	LowGQX	END=248402445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	248402446	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr1	248402447	.	C	.	.	LowGQX	END=248402448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr1	248402449	.	C	.	32.98	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3:60:3
chr1	248402450	.	A	.	.	LowGQX	.	GT	./.
chr1	248402451	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr1	248402452	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	248402453	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr1	248402454	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr1	248402455	.	C	.	.	LowGQX	END=248402492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248402493	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248402494	.	G	.	.	LowGQX	END=248402497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248402498	.	A	.	.	LowGQX	.	GT	./.
chr1	248402499	.	A	.	.	LowGQX	END=248402507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248402508	.	C	.	.	LowGQX	.	GT	./.
chr1	248402509	.	T	.	.	LowGQX	END=248402513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248402514	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248402515	.	A	.	.	LowGQX	END=248402524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248402525	.	A	.	.	LowGQX	.	GT	./.
chr1	248402526	.	C	.	.	LowGQX	END=248402528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248402529	.	A	.	.	LowGQX	.	GT	./.
chr1	248402530	.	G	.	.	LowGQX	END=248402539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402540	.	T	.	.	LowGQX	.	GT	./.
chr1	248402541	.	A	.	.	LowGQX	END=248402543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402544	.	T	.	.	LowGQX	.	GT	./.
chr1	248402545	.	G	.	.	LowGQX	END=248402558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402559	.	C	.	.	LowGQX	END=248402607	GT	./.
chr1	248402608	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402609	.	T	.	.	LowGQX	.	GT	./.
chr1	248402610	.	G	.	.	LowGQX	END=248402612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402613	.	A	.	.	LowGQX	.	GT	./.
chr1	248402614	.	C	.	.	LowGQX	END=248402625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402626	.	C	.	.	LowGQX	.	GT	./.
chr1	248402627	.	A	.	.	LowGQX	END=248402632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402633	.	C	.	.	LowGQX	.	GT	./.
chr1	248402634	.	T	.	.	LowGQX	END=248402652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402653	.	T	.	.	LowGQX	.	GT	./.
chr1	248402654	.	G	.	.	LowGQX	END=248402663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402664	.	C	.	.	LowGQX	.	GT	./.
chr1	248402665	.	T	.	.	LowGQX	END=248402668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402669	.	G	.	.	LowGQX	END=248402670	GT	./.
chr1	248402671	.	T	.	.	LowGQX	END=248402679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402680	.	C	.	.	LowGQX	END=248402683	GT	./.
chr1	248402684	.	G	.	.	LowGQX	END=248402685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402686	.	G	.	.	LowGQX	END=248402687	GT	./.
chr1	248402688	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402689	.	T	.	.	LowGQX	.	GT	./.
chr1	248402690	.	C	.	.	LowGQX	END=248402696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402697	.	G	.	.	LowGQX	.	GT	./.
chr1	248402698	.	G	.	.	LowGQX	END=248402706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402707	.	G	.	.	LowGQX	.	GT	./.
chr1	248402708	.	C	.	.	LowGQX	END=248402710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402711	.	G	.	.	LowGQX	.	GT	./.
chr1	248402712	.	C	.	.	LowGQX	END=248402716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402717	.	G	.	.	LowGQX	.	GT	./.
chr1	248402718	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402719	.	C	.	.	LowGQX	END=248402722	GT	./.
chr1	248402723	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402724	.	C	.	.	LowGQX	END=248402725	GT	./.
chr1	248402726	.	T	.	.	LowGQX	END=248402727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402728	.	T	.	.	LowGQX	.	GT	./.
chr1	248402729	.	T	.	.	LowGQX	END=248402739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402740	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248402741	.	T	.	.	LowGQX	.	GT	./.
chr1	248402742	.	C	.	.	LowGQX	END=248402743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248402744	.	C	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr1	248402745	.	T	.	.	LowGQX	END=248402757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr1	248402758	.	C	T	52.82	LowGQ;LowGQX	DP=3;Dels=0.00;FS=0.000;HRun=5;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=17.61;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:6.02:84,6,0:60:6:1.000
chr1	248402759	.	T	.	.	LowGQX	END=248402776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248402777	.	G	.	5.79	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr1	248402778	.	C	.	.	LowGQX	END=248402797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248402798	.	A	.	.	LowGQX	.	GT	./.
chr1	248402799	.	C	.	.	LowGQX	END=248402816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248402817	.	A	.	.	LowGQX	.	GT	./.
chr1	248402818	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr1	248402819	.	A	G	4.97	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.49;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:25.53:33,0,26:60:5:0.500
chr1	248402820	.	G	.	.	LowGQX	END=248402884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402885	.	T	.	.	LowGQX	.	GT	./.
chr1	248402886	.	C	.	.	LowGQX	END=248402890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402891	.	G	.	.	LowGQX	.	GT	./.
chr1	248402892	.	T	.	.	LowGQX	END=248402894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248402895	.	T	.	.	LowGQX	END=248402977	GT	./.
chr1	248402978	.	C	.	.	LowGQX	END=248403064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248403065	.	A	.	.	LowGQX	END=248403066	GT	./.
chr1	248403067	.	T	.	.	LowGQX	END=248403088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248403089	.	C	.	.	LowGQX	.	GT	./.
chr1	248403090	.	C	.	.	LowGQX	END=248403128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248403129	.	C	.	.	LowGQX	END=248403159	GT	./.
chr1	248403160	.	A	.	.	LowGQX	END=248403168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248436152	.	G	.	.	LowGQX	END=248436748	GT	./.
chr1	248436749	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436750	.	C	.	.	LowGQX	END=248436751	GT	./.
chr1	248436752	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436753	.	C	.	.	LowGQX	END=248436756	GT	./.
chr1	248436757	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436758	.	C	.	.	LowGQX	.	GT	./.
chr1	248436759	.	G	.	.	LowGQX	END=248436760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436761	.	T	.	.	LowGQX	END=248436765	GT	./.
chr1	248436766	.	G	.	.	LowGQX	END=248436767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436768	.	C	.	.	LowGQX	END=248436771	GT	./.
chr1	248436772	.	G	.	.	LowGQX	END=248436773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436774	.	C	.	.	LowGQX	END=248436775	GT	./.
chr1	248436776	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436777	.	C	.	.	LowGQX	END=248436780	GT	./.
chr1	248436781	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436782	.	A	.	.	LowGQX	.	GT	./.
chr1	248436783	.	G	.	.	LowGQX	END=248436784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436785	.	A	.	.	LowGQX	END=248436786	GT	./.
chr1	248436787	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436788	.	C	.	.	LowGQX	END=248436803	GT	./.
chr1	248436804	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436805	.	T	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=43;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:43:3:1.000
chr1	248436806	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436807	.	T	.	.	LowGQX	.	GT	./.
chr1	248436808	.	G	.	.	LowGQX	END=248436809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436810	.	G	.	.	LowGQX	.	GT	./.
chr1	248436811	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436812	.	A	.	.	LowGQX	.	GT	./.
chr1	248436813	.	G	.	.	LowGQX	END=248436814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436815	.	A	.	.	LowGQX	END=248436824	GT	./.
chr1	248436825	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436826	.	C	.	.	LowGQX	END=248436834	GT	./.
chr1	248436835	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436836	.	C	.	.	LowGQX	END=248436838	GT	./.
chr1	248436839	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436840	.	C	.	.	LowGQX	.	GT	./.
chr1	248436841	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436842	.	C	.	.	LowGQX	.	GT	./.
chr1	248436843	.	G	.	.	LowGQX	END=248436845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr1	248436846	.	A	.	.	LowGQX	.	GT	./.
chr1	248436847	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:46
chr1	248436848	.	A	.	.	LowGQX	END=248436849	GT	./.
chr1	248436850	.	G	.	.	LowGQX	END=248436855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:46
chr1	248436856	.	A	.	.	LowGQX	.	GT	./.
chr1	248436857	.	C	.	.	LowGQX	END=248436865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:46
chr1	248436866	.	A	.	.	LowGQX	.	GT	./.
chr1	248436867	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:46
chr1	248436868	.	G	.	.	LowGQX	END=248436869	GT	./.
chr1	248436870	.	A	.	.	LowGQX	END=248436871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:46
chr1	248436872	.	T	.	.	LowGQX	.	GT	./.
chr1	248436873	.	C	.	.	LowGQX	END=248436876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:46
chr1	248436877	.	C	.	.	LowGQX	.	GT	./.
chr1	248436878	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:46
chr1	248436879	.	C	.	.	LowGQX	.	GT	./.
chr1	248436880	.	C	.	.	LowGQX	END=248436883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:46
chr1	248436884	.	T	.	.	LowGQX	.	GT	./.
chr1	248436885	.	T	.	.	LowGQX	END=248436887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:46
chr1	248436888	.	G	.	.	LowGQX	.	GT	./.
chr1	248436889	.	C	.	.	LowGQX	END=248436896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:46
chr1	248436897	.	T	.	.	LowGQX	.	GT	./.
chr1	248436898	.	G	.	.	LowGQX	END=248436902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	248436903	.	C	.	.	LowGQX	.	GT	./.
chr1	248436904	.	C	.	.	LowGQX	END=248436928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	248436929	.	T	.	.	LowGQX	.	GT	./.
chr1	248436930	.	G	.	.	LowGQX	END=248436932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	248436933	.	T	.	.	LowGQX	.	GT	./.
chr1	248436934	.	C	.	.	LowGQX	END=248436935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	248436936	.	G	.	.	LowGQX	.	GT	./.
chr1	248436937	.	G	.	.	LowGQX	END=248436955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	248436956	.	T	.	.	LowGQX	.	GT	./.
chr1	248436957	.	G	.	.	LowGQX	END=248436964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	248436965	.	T	.	.	LowGQX	.	GT	./.
chr1	248436966	.	G	.	.	LowGQX	END=248436974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	248436975	.	G	.	.	LowGQX	.	GT	./.
chr1	248436976	.	A	.	.	LowGQX	END=248436994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	248436995	.	G	.	.	LowGQX	END=248437118	GT	./.
chr1	248457916	.	G	.	.	LowGQX	END=248458882	GT	./.
chr1	248486930	.	A	.	.	LowGQX	END=248487872	GT	./.
chr1	248512075	.	C	.	.	LowGQX	END=248512841	GT	./.
chr1	248512842	.	G	.	.	LowGQX	END=248512851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248512852	.	G	.	.	LowGQX	.	GT	./.
chr1	248512853	.	G	.	.	LowGQX	END=248512871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248512872	.	G	.	.	LowGQX	.	GT	./.
chr1	248512873	.	C	.	.	LowGQX	END=248513017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248524881	.	T	.	.	LowGQX	END=248525905	GT	./.
chr1	248525906	.	G	.	.	LowGQX	END=248525931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248550908	.	C	.	.	LowGQX	END=248550969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248550970	.	A	.	.	LowGQX	END=248551305	GT	./.
chr1	248551306	.	C	.	.	LowGQX	END=248551426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248551427	.	A	.	.	LowGQX	END=248551838	GT	./.
chr1	248569294	.	C	.	.	LowGQX	END=248569485	GT	./.
chr1	248569486	.	T	.	.	LowGQX	END=248569701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248569702	.	T	.	.	LowGQX	END=248569834	GT	./.
chr1	248569835	.	G	.	.	LowGQX	END=248569925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248569926	.	C	.	.	LowGQX	END=248569994	GT	./.
chr1	248569995	.	G	.	.	LowGQX	END=248570016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570017	.	A	.	.	LowGQX	.	GT	./.
chr1	248570018	.	C	.	.	LowGQX	END=248570196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570197	.	T	.	.	LowGQX	.	GT	./.
chr1	248570198	.	C	.	.	LowGQX	END=248570203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570204	.	G	.	.	LowGQX	END=248570215	GT	./.
chr1	248570216	.	C	.	.	LowGQX	END=248570217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570218	.	C	.	.	LowGQX	.	GT	./.
chr1	248570219	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570220	.	T	.	.	LowGQX	.	GT	./.
chr1	248570221	.	A	.	.	LowGQX	END=248570224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570225	.	G	.	.	LowGQX	.	GT	./.
chr1	248570226	.	C	.	.	LowGQX	END=248570229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570230	.	C	.	.	LowGQX	END=248570232	GT	./.
chr1	248570233	.	A	.	.	LowGQX	END=248570235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570236	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	248570237	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570238	.	T	.	.	LowGQX	END=248570239	GT	./.
chr1	248570240	.	C	.	.	LowGQX	END=248570247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570248	.	C	.	.	LowGQX	.	GT	./.
chr1	248570249	.	A	.	.	LowGQX	END=248570251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570252	.	C	.	.	LowGQX	.	GT	./.
chr1	248570253	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570254	.	A	.	.	LowGQX	.	GT	./.
chr1	248570255	.	G	.	.	LowGQX	END=248570257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570258	.	C	.	.	LowGQX	.	GT	./.
chr1	248570259	.	A	.	.	LowGQX	END=248570261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570262	.	G	.	.	LowGQX	END=248570264	GT	./.
chr1	248570265	.	C	.	.	LowGQX	END=248570267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570268	.	T	.	.	LowGQX	.	GT	./.
chr1	248570269	.	C	.	.	LowGQX	END=248570273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570274	.	T	.	.	LowGQX	.	GT	./.
chr1	248570275	.	T	.	.	LowGQX	END=248570281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570282	.	C	.	.	LowGQX	END=248570283	GT	./.
chr1	248570284	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570285	.	T	.	.	LowGQX	.	GT	./.
chr1	248570286	.	C	.	.	LowGQX	END=248570291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570292	.	C	.	.	LowGQX	END=248570294	GT	./.
chr1	248570295	.	A	.	.	LowGQX	END=248570296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570297	.	G	.	.	LowGQX	END=248570298	GT	./.
chr1	248570299	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570300	.	G	.	.	LowGQX	.	GT	./.
chr1	248570301	.	A	.	.	LowGQX	END=248570303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570304	.	C	.	.	LowGQX	.	GT	./.
chr1	248570305	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570306	.	C	.	.	LowGQX	.	GT	./.
chr1	248570307	.	C	.	.	LowGQX	END=248570308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570309	.	C	.	.	LowGQX	.	GT	./.
chr1	248570310	.	A	.	.	LowGQX	END=248570335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248570336	.	G	.	.	LowGQX	.	GT	./.
chr1	248570337	.	A	.	.	LowGQX	END=248570339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248570340	.	G	.	.	LowGQX	END=248570341	GT	./.
chr1	248570342	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248570343	.	G	.	.	LowGQX	.	GT	./.
chr1	248570344	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248570345	.	T	.	.	LowGQX	.	GT	./.
chr1	248570346	.	C	.	.	LowGQX	END=248570355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248570356	.	C	.	.	LowGQX	.	GT	./.
chr1	248570357	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	248570358	.	T	.	.	LowGQX	END=248570359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570360	.	G	.	.	LowGQX	.	GT	./.
chr1	248570361	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570362	.	G	.	.	LowGQX	.	GT	./.
chr1	248570363	.	G	.	.	LowGQX	END=248570364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570365	.	G	.	.	LowGQX	.	GT	./.
chr1	248570366	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570367	.	T	.	.	LowGQX	.	GT	./.
chr1	248570368	.	T	.	.	LowGQX	END=248570369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570370	.	A	.	.	LowGQX	END=248570371	GT	./.
chr1	248570372	.	G	.	.	LowGQX	END=248570373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570374	.	G	.	.	LowGQX	END=248570375	GT	./.
chr1	248570376	.	C	.	.	LowGQX	END=248570388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570389	.	C	.	.	LowGQX	.	GT	./.
chr1	248570390	.	A	.	.	LowGQX	END=248570394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570395	.	G	.	.	LowGQX	END=248570396	GT	./.
chr1	248570397	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570398	.	T	.	.	LowGQX	.	GT	./.
chr1	248570399	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248570400	.	T	.	.	LowGQX	.	GT	./.
chr1	248570401	.	T	.	.	LowGQX	END=248570407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248616097	.	C	.	.	LowGQX;LowMQ	END=248616125	GT	./.
chr1	248616126	.	T	.	.	LowGQX	END=248616358	GT	./.
chr1	248616359	.	G	.	.	LowGQX	END=248616464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248616465	.	C	.	.	LowGQX	END=248616868	GT	./.
chr1	248616869	.	C	.	.	LowGQX;LowMQ	END=248616988	GT	./.
chr1	248616989	.	T	.	.	LowGQX	END=248617075	GT	./.
chr1	248636639	.	A	.	.	LowGQX	END=248637081	GT	./.
chr1	248637082	.	G	.	.	LowGQX	END=248637260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr1	248637261	.	A	.	.	LowGQX	END=248637296	GT	./.
chr1	248637297	.	A	.	.	LowGQX	END=248637311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	248637312	.	A	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=48;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:48:3:1.000
chr1	248637313	.	G	.	.	LowGQX	END=248637479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr1	248637480	.	A	.	.	LowGQX	END=248637615	GT	./.
chr1	248651877	.	T	.	.	LowGQX	END=248652420	GT	./.
chr1	248652421	.	A	.	.	LowGQX;LowMQ	END=248652682	GT	./.
chr1	248652683	.	T	.	.	LowGQX	END=248652839	GT	./.
chr1	248684946	.	A	.	.	LowGQX	END=248685228	GT	./.
chr1	248685229	.	C	.	.	LowGQX	END=248685252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248685253	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr1	248685254	.	G	.	.	LowGQX	END=248685440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248685441	.	A	.	.	LowGQX	END=248685571	GT	./.
chr1	248685572	.	G	.	.	LowGQX	END=248685706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248685707	.	A	.	.	LowGQX	END=248685900	GT	./.
chr1	248721833	.	C	.	.	LowGQX	END=248722377	GT	./.
chr1	248722378	.	G	.	.	LowGQX;LowMQ	END=248722525	GT	./.
chr1	248722526	.	C	.	.	LowGQX	END=248722571	GT	./.
chr1	248722572	.	T	.	.	LowGQX;LowMQ	END=248722721	GT	./.
chr1	248722722	.	T	.	.	LowGQX	END=248722792	GT	./.
chr1	248737089	.	T	.	.	LowGQX;LowMQ	END=248737091	GT	./.
chr1	248737092	.	T	.	.	LowGQX	END=248738063	GT	./.
chr1	248756129	.	C	.	.	LowGQX	END=248757071	GT	./.
chr1	248789477	.	C	.	.	LowGQX	END=248789655	GT	./.
chr1	248789656	.	C	.	.	LowGQX	END=248789674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248789675	.	G	.	.	LowGQX	.	GT	./.
chr1	248789676	.	C	.	.	LowGQX	END=248789683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248789684	.	T	.	.	LowGQX	END=248789685	GT	./.
chr1	248789686	.	G	.	.	LowGQX	END=248789705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248789706	.	A	.	.	LowGQX	.	GT	./.
chr1	248789707	.	G	.	.	LowGQX	END=248789708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248789709	.	G	.	.	LowGQX	.	GT	./.
chr1	248789710	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248789711	.	G	.	.	LowGQX	.	GT	./.
chr1	248789712	.	A	.	.	LowGQX	END=248789721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248789722	.	G	.	.	LowGQX	END=248789723	GT	./.
chr1	248789724	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248789725	.	G	.	.	LowGQX	.	GT	./.
chr1	248789726	.	A	.	.	LowGQX	END=248789728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248789729	.	G	.	.	LowGQX	.	GT	./.
chr1	248789730	.	C	.	.	LowGQX	END=248789731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248789732	.	T	.	.	LowGQX	.	GT	./.
chr1	248789733	.	T	.	.	LowGQX	END=248789734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248789735	.	T	.	.	LowGQX	.	GT	./.
chr1	248789736	.	T	.	.	LowGQX	END=248789739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248789740	.	A	.	.	LowGQX	.	GT	./.
chr1	248789741	.	C	.	.	LowGQX	END=248789746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248789747	.	G	.	.	LowGQX	.	GT	./.
chr1	248789748	.	C	.	.	LowGQX	END=248789756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248789757	.	T	.	.	LowGQX	.	GT	./.
chr1	248789758	.	G	.	.	LowGQX	END=248789790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	248789791	.	A	.	.	LowGQX	.	GT	./.
chr1	248789792	.	G	.	.	LowGQX	END=248789813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248789814	.	T	.	.	LowGQX	END=248789815	GT	./.
chr1	248789816	.	A	.	.	LowGQX	END=248789830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248789831	.	C	.	.	LowGQX	.	GT	./.
chr1	248789832	.	A	.	.	LowGQX	END=248789849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248789850	.	T	.	.	LowGQX	.	GT	./.
chr1	248789851	.	T	.	.	LowGQX	END=248789882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248789883	.	T	.	.	LowGQX	.	GT	./.
chr1	248789884	.	C	.	.	LowGQX	END=248789899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248789900	.	T	.	.	LowGQX	END=248790282	GT	./.
chr1	248790283	.	G	.	.	LowGQX	END=248790307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248790308	.	A	.	.	LowGQX	.	GT	./.
chr1	248790309	.	C	.	.	LowGQX	END=248790311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248790312	.	A	.	.	LowGQX	.	GT	./.
chr1	248790313	.	A	.	.	LowGQX	END=248790316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248790317	.	G	.	.	LowGQX	.	GT	./.
chr1	248790318	.	C	.	.	LowGQX	END=248790322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248790323	.	A	.	.	LowGQX	.	GT	./.
chr1	248790324	.	C	.	.	LowGQX	END=248790330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248790331	.	C	.	.	LowGQX	.	GT	./.
chr1	248790332	.	A	.	.	LowGQX	END=248790358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248790359	.	A	.	.	LowGQX	.	GT	./.
chr1	248790360	.	C	.	.	LowGQX	END=248790364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248790365	.	C	.	.	LowGQX	.	GT	./.
chr1	248790366	.	C	.	.	LowGQX	END=248790381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248790382	.	C	.	.	LowGQX	END=248790383	GT	./.
chr1	248790384	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248790385	.	C	.	.	LowGQX	END=248790386	GT	./.
chr1	248790387	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248790388	.	A	.	.	LowGQX	.	GT	./.
chr1	248790389	.	A	.	.	LowGQX	END=248790392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248790393	.	C	.	.	LowGQX	.	GT	./.
chr1	248790394	.	C	.	.	LowGQX	END=248790403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248790404	.	A	.	.	LowGQX	END=248790405	GT	./.
chr1	248790406	.	G	.	.	LowGQX	END=248790412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248790413	.	G	.	.	LowGQX	.	GT	./.
chr1	248790414	.	A	.	.	LowGQX	END=248790415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248790416	.	G	.	.	LowGQX	.	GT	./.
chr1	248790417	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248790418	.	T	.	.	LowGQX	.	GT	./.
chr1	248790419	.	G	.	.	LowGQX	END=248790420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248790421	.	G	.	.	LowGQX	.	GT	./.
chr1	248790422	.	T	.	.	LowGQX	END=248790426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248790427	.	C	.	.	LowGQX	.	GT	./.
chr1	248790428	.	A	.	.	LowGQX	END=248790431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248801516	.	C	.	.	LowGQX	END=248801584	GT	./.
chr1	248801585	.	C	.	.	LowGQX;LowMQ	END=248801768	GT	./.
chr1	248801769	.	G	.	.	LowGQX	END=248801777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:33
chr1	248801778	.	A	T	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=33;MQ0=1;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,1:2:3.01:39,3,0:33:3:0.500
chr1	248801779	.	G	.	.	LowGQX	END=248801824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:33
chr1	248801825	.	A	.	.	LowGQX	END=248801944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	248801945	.	C	.	.	LowGQX	END=248801951	GT	./.
chr1	248801952	.	C	.	.	LowGQX	END=248801980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr1	248801981	.	T	.	.	LowGQX	END=248802625	GT	./.
chr1	248813219	.	A	.	.	LowGQX	END=248814187	GT	./.
chr1	248844668	.	T	.	.	LowGQX	END=248845607	GT	./.
chr1	248902911	.	C	.	.	LowGQX	END=248902962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	248902963	.	G	.	.	LowGQX	END=248903151	GT	./.
chr1	249106097	.	G	.	.	LowGQX	END=249106571	GT	./.
chr1	249107186	.	A	.	.	LowGQX	END=249107237	GT	./.
chr1	249107238	.	T	.	.	LowGQX	END=249107252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	249107253	.	G	.	.	LowGQX	.	GT	./.
chr1	249107254	.	G	.	.	LowGQX	END=249107280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	249107281	.	A	.	.	LowGQX	.	GT	./.
chr1	249107282	.	G	.	.	LowGQX	END=249107293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	249107294	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr1	249107295	.	G	.	.	LowGQX	END=249107339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	249107340	.	G	.	.	LowGQX	.	GT	./.
chr1	249107341	.	C	.	.	LowGQX	END=249107343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	249107344	.	T	C	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	249107345	.	T	.	.	LowGQX	END=249107363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	249108646	.	A	.	.	LowGQX	END=249108863	GT	./.
chr1	249108869	.	C	.	.	LowGQX	END=249108968	GT	./.
chr1	249110731	.	A	.	.	LowGQX	END=249110742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	249110743	.	A	.	.	LowGQX	END=249110863	GT	./.
chr1	249111003	.	A	.	.	LowGQX	END=249111102	GT	./.
chr1	249111177	.	C	.	.	LowGQX	END=249111276	GT	./.
chr1	249118950	.	A	.	.	LowGQX	END=249119136	GT	./.
chr1	249141472	.	C	.	.	LowGQX	END=249142021	GT	./.
chr1	249142022	.	C	.	.	LowGQX	END=249142273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	249142274	.	T	.	.	LowGQX	.	GT	./.
chr1	249142275	.	T	.	.	LowGQX	END=249142278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	249142279	.	C	.	.	LowGQX	.	GT	./.
chr1	249142280	.	G	.	.	LowGQX	END=249142449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	249142450	.	T	.	.	LowGQX	END=249142834	GT	./.
chr1	249143023	.	C	.	.	LowGQX	END=249143121	GT	./.
chr1	249143122	.	G	.	.	LowGQX	END=249143314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	249144407	.	G	.	.	LowGQX	END=249144717	GT	./.
chr1	249144879	.	A	.	.	LowGQX	END=249144982	GT	./.
chr1	249145077	.	T	.	.	LowGQX	END=249145138	GT	./.
chr1	249145139	.	T	.	.	LowGQX	END=249145176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	249148134	.	A	.	.	LowGQX	END=249148252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	249149569	.	T	.	.	LowGQX	END=249149613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	249149614	.	A	.	.	LowGQX	END=249149668	GT	./.
chr1	249149755	.	A	.	.	LowGQX	END=249149881	GT	./.
chr1	249149922	.	A	.	.	LowGQX	END=249150147	GT	./.
chr1	249150482	.	C	.	.	LowGQX	END=249150515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	249150516	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr1	249150517	.	C	.	.	LowGQX	END=249150521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	249150522	.	A	.	.	LowGQX	END=249150623	GT	./.
chr1	249150688	.	T	.	.	LowGQX	END=249150787	GT	./.
chr1	249151431	.	A	.	.	LowGQX	END=249151491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	249151492	.	A	.	.	LowGQX	END=249151698	GT	./.
chr1	249151993	.	C	.	.	LowGQX	END=249152041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	249152042	.	A	.	.	LowGQX	END=249152092	GT	./.
chr1	249152152	.	G	.	.	LowGQX	END=249152264	GT	./.
chr1	249152328	.	A	.	.	LowGQX	END=249152389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr1	249152390	.	A	.	.	LowGQX	END=249152520	GT	./.
chr1	249152662	.	A	.	.	LowGQX	END=249152761	GT	./.
chr1	249208021	.	A	.	.	LowGQX	END=249208120	GT	./.
chr1	249208705	.	A	.	.	LowGQX	END=249208759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	249208760	.	T	.	.	LowGQX	.	GT	./.
chr1	249208761	.	C	.	.	LowGQX	END=249208804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	249210799	.	A	.	.	LowGQX	END=249211358	GT	./.
chr1	249211359	.	C	.	.	LowGQX	END=249211476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	249211477	.	G	T	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr1	249211478	.	A	.	.	LowGQX	END=249211530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	249211531	.	A	.	.	LowGQX	END=249211915	GT	./.
chr1	249211916	.	G	.	.	LowGQX	END=249212080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr1	249212081	.	T	.	.	LowGQX	END=249212564	GT	./.
chr2	41568	.	G	.	.	LowGQX	END=41667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	45438	.	A	.	.	LowGQX	END=45449	GT	./.
chr2	45450	.	G	.	.	LowGQX	END=45558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	45559	.	A	.	.	LowGQX	.	GT	./.
chr2	45560	.	G	.	.	LowGQX	END=45599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	45600	.	C	.	.	LowGQX	END=45717	GT	./.
chr2	45718	.	C	.	.	LowGQX	END=45724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	45725	.	A	.	.	LowGQX	.	GT	./.
chr2	45726	.	C	.	.	LowGQX	END=45730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	45731	.	A	.	.	LowGQX	.	GT	./.
chr2	45732	.	G	.	.	LowGQX	END=45744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	45745	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	45746	.	C	.	.	LowGQX	END=45777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	45778	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	45779	.	C	.	.	LowGQX	END=45867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	45868	.	C	.	.	LowGQX	END=46394	GT	./.
chr2	218809	.	C	.	.	LowGQX	END=219003	GT	./.
chr2	224843	.	C	.	.	LowGQX	END=224942	GT	./.
chr2	229925	.	C	.	.	LowGQX	END=229981	GT	./.
chr2	229982	.	C	.	.	LowGQX	END=230046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	230972	.	C	.	.	LowGQX	END=231018	GT	./.
chr2	231019	.	G	.	.	LowGQX	END=231042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	231043	.	T	.	.	LowGQX	.	GT	./.
chr2	231044	.	T	.	.	LowGQX	END=231129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	231130	.	G	.	.	LowGQX	.	GT	./.
chr2	231131	.	A	.	.	LowGQX	END=231137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	231138	.	C	.	.	LowGQX	.	GT	./.
chr2	231139	.	G	.	.	LowGQX	END=231167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	231168	.	G	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr2	231169	.	C	.	.	LowGQX	END=231171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	231172	.	G	.	.	LowGQX	END=231173	GT	./.
chr2	231174	.	A	.	.	LowGQX	END=231177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	231178	.	C	.	.	LowGQX	.	GT	./.
chr2	231179	.	T	.	.	LowGQX	END=231182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	231183	.	C	.	.	LowGQX	.	GT	./.
chr2	231184	.	A	.	.	LowGQX	END=231188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	231189	.	A	.	.	LowGQX	.	GT	./.
chr2	231190	.	A	.	.	LowGQX	END=231193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	233099	.	A	.	.	LowGQX	END=233231	GT	./.
chr2	234158	.	A	.	.	LowGQX	END=234274	GT	./.
chr2	242739	.	A	.	.	LowGQX	END=242838	GT	./.
chr2	243486	.	A	.	.	LowGQX	END=243519	GT	./.
chr2	243520	.	A	.	.	LowGQX	END=243585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	247520	.	C	.	.	LowGQX	END=247619	GT	./.
chr2	249730	.	C	.	.	LowGQX	END=249844	GT	./.
chr2	253004	.	C	.	.	LowGQX	END=253115	GT	./.
chr2	262581	.	G	.	.	LowGQX	END=262652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	262653	.	A	.	.	LowGQX	END=262680	GT	./.
chr2	263874	.	A	.	.	LowGQX	END=264033	GT	./.
chr2	264937	.	G	.	.	LowGQX	END=265036	GT	./.
chr2	269275	.	G	.	.	LowGQX	END=269374	GT	./.
chr2	271853	.	C	.	.	LowGQX	END=271854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	271855	.	T	.	.	LowGQX	END=271858	GT	./.
chr2	271859	.	T	.	.	LowGQX	END=271864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	271865	.	G	.	.	LowGQX	.	GT	./.
chr2	271866	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	271867	.	T	.	.	LowGQX	.	GT	./.
chr2	271868	.	A	.	.	LowGQX	END=271869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	271870	.	C	.	.	LowGQX	.	GT	./.
chr2	271871	.	A	.	.	LowGQX	END=271874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	271875	.	G	.	.	LowGQX	.	GT	./.
chr2	271876	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	271877	.	C	.	.	LowGQX	END=271879	GT	./.
chr2	271880	.	T	.	.	LowGQX	END=271881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	271882	.	A	.	.	LowGQX	END=271884	GT	./.
chr2	271885	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	271886	.	A	.	.	LowGQX	END=271887	GT	./.
chr2	271888	.	T	.	.	LowGQX	END=271889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	271890	.	C	.	.	LowGQX	.	GT	./.
chr2	271891	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	271892	.	G	.	.	LowGQX	.	GT	./.
chr2	271893	.	A	.	.	LowGQX	END=271899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	271900	.	T	.	.	LowGQX	.	GT	./.
chr2	271901	.	T	.	.	LowGQX	END=271902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	271903	.	C	.	.	LowGQX	.	GT	./.
chr2	271904	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	271905	.	G	.	.	LowGQX	END=271906	GT	./.
chr2	271907	.	A	.	.	LowGQX	END=271910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	271911	.	T	.	.	LowGQX	.	GT	./.
chr2	271912	.	T	.	.	LowGQX	END=271913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	271914	.	T	.	.	LowGQX	END=271936	GT	./.
chr2	271937	.	A	.	.	LowGQX	END=271939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	271940	.	G	.	.	LowGQX	.	GT	./.
chr2	271941	.	T	.	.	LowGQX	END=271942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	271943	.	A	.	.	LowGQX	END=271944	GT	./.
chr2	271945	.	T	.	.	LowGQX	END=271949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	271950	.	T	.	.	LowGQX	.	GT	./.
chr2	271951	.	T	.	.	LowGQX	END=271952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	272035	.	A	.	.	LowGQX	END=272036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	272037	.	T	.	.	LowGQX	.	GT	./.
chr2	272038	.	G	.	.	LowGQX	END=272041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	272042	.	G	.	.	LowGQX	.	GT	./.
chr2	272043	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	272044	.	T	.	.	LowGQX	.	GT	./.
chr2	272045	.	A	.	.	LowGQX	END=272062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	272063	.	C	.	.	LowGQX	.	GT	./.
chr2	272064	.	G	.	.	LowGQX	END=272078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	272079	.	A	.	.	LowGQX	END=272332	GT	./.
chr2	275121	.	A	.	.	LowGQX	END=275123	GT	./.
chr2	275124	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	275125	.	C	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	275126	.	T	.	.	LowGQX	END=275220	GT	./.
chr2	276978	.	A	.	.	LowGQX	END=277087	GT	./.
chr2	277216	.	T	.	.	LowGQX	END=277315	GT	./.
chr2	280100	.	C	.	.	LowGQX	END=280199	GT	./.
chr2	283093	.	G	.	.	LowGQX	END=283117	GT	./.
chr2	283118	.	T	.	.	LowGQX	END=283192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	286113	.	T	.	.	LowGQX	END=286212	GT	./.
chr2	286267	.	T	.	.	LowGQX	END=286366	GT	./.
chr2	287571	.	G	.	.	LowGQX	END=287840	GT	./.
chr2	669578	.	C	.	.	LowGQX	END=669687	GT	./.
chr2	669695	.	A	.	.	LowGQX	END=669853	GT	./.
chr2	672726	.	C	.	.	LowGQX	END=672945	GT	./.
chr2	675508	.	A	.	.	LowGQX	END=675590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	675591	.	T	.	.	LowGQX	.	GT	./.
chr2	675592	.	G	.	.	LowGQX	END=675632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	675717	.	G	.	.	LowGQX	END=675816	GT	./.
chr2	676098	.	G	.	.	LowGQX	END=676115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676116	.	A	.	.	LowGQX	END=676119	GT	./.
chr2	676120	.	A	.	.	LowGQX	END=676124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676125	.	T	.	.	LowGQX	.	GT	./.
chr2	676126	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676127	.	A	.	.	LowGQX	.	GT	./.
chr2	676128	.	G	.	.	LowGQX	END=676144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676145	.	G	.	.	LowGQX	.	GT	./.
chr2	676146	.	A	.	.	LowGQX	END=676148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676149	.	T	.	.	LowGQX	END=676150	GT	./.
chr2	676151	.	A	.	.	LowGQX	END=676152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676153	.	T	.	.	LowGQX	.	GT	./.
chr2	676154	.	T	.	.	LowGQX	END=676159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676160	.	A	.	.	LowGQX	END=676161	GT	./.
chr2	676162	.	C	.	.	LowGQX	END=676166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676167	.	C	.	.	LowGQX	END=676169	GT	./.
chr2	676170	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676171	.	A	.	.	LowGQX	END=676173	GT	./.
chr2	676174	.	A	.	.	LowGQX	END=676175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676176	.	A	.	.	LowGQX	END=676180	GT	./.
chr2	676181	.	A	.	.	LowGQX	END=676187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676188	.	A	.	.	LowGQX	END=676192	GT	./.
chr2	676193	.	G	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr2	676194	.	T	.	.	LowGQX	.	GT	./.
chr2	676195	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676196	.	C	.	.	LowGQX	END=676238	GT	./.
chr2	676557	.	C	.	.	LowGQX	END=676578	GT	./.
chr2	676579	.	G	.	.	LowGQX	END=676593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676594	.	G	.	.	LowGQX	.	GT	./.
chr2	676595	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676596	.	T	.	.	LowGQX	.	GT	./.
chr2	676597	.	G	.	.	LowGQX	END=676600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676601	.	G	.	.	LowGQX	.	GT	./.
chr2	676602	.	G	.	.	LowGQX	END=676614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676615	.	T	.	.	LowGQX	.	GT	./.
chr2	676616	.	G	.	.	LowGQX	END=676618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676619	.	C	.	.	LowGQX	.	GT	./.
chr2	676620	.	A	.	.	LowGQX	END=676621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676622	.	A	.	.	LowGQX	.	GT	./.
chr2	676623	.	C	.	.	LowGQX	END=676624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676625	.	C	.	.	LowGQX	.	GT	./.
chr2	676626	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676627	.	A	.	.	LowGQX	END=676628	GT	./.
chr2	676629	.	C	.	.	LowGQX	END=676630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676631	.	A	.	.	LowGQX	END=676632	GT	./.
chr2	676633	.	T	.	.	LowGQX	END=676636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676637	.	C	.	.	LowGQX	.	GT	./.
chr2	676638	.	A	.	.	LowGQX	END=676639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676640	.	G	.	.	LowGQX	.	GT	./.
chr2	676641	.	T	.	.	LowGQX	END=676642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676643	.	A	.	.	LowGQX	.	GT	./.
chr2	676644	.	C	.	.	LowGQX	END=676649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	676650	.	G	.	.	LowGQX	END=676651	GT	./.
chr2	676652	.	C	.	.	LowGQX	END=676656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	677208	.	A	.	.	LowGQX	END=677333	GT	./.
chr2	677334	.	G	.	.	LowGQX	END=677366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	677367	.	A	.	.	LowGQX	.	GT	./.
chr2	905287	.	T	.	.	LowGQX	END=905300	GT	./.
chr2	905301	.	A	.	.	LowGQX	END=905365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	905366	.	A	.	.	LowGQX	.	GT	./.
chr2	905367	.	G	.	.	LowGQX	END=905369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	905370	.	T	.	.	LowGQX	END=905509	GT	./.
chr2	905510	.	G	.	.	LowGQX;LowMQ	END=905550	GT	./.
chr2	905551	.	T	.	.	LowGQX	END=905630	GT	./.
chr2	905631	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:22
chr2	905632	.	C	.	.	LowGQX	END=905633	GT	./.
chr2	905634	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:22
chr2	905635	.	T	.	.	LowGQX	.	GT	./.
chr2	905636	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:22
chr2	905637	.	G	.	.	LowGQX	.	GT	./.
chr2	905638	.	G	.	.	LowGQX	END=905642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:22
chr2	905643	.	G	.	.	LowGQX;LowMQ	END=905650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:16
chr2	905651	.	T	.	32.99	LowGQX;LowMQ	DP=2;MQ=16;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:16:3
chr2	905652	.	T	.	.	LowGQX;LowMQ	END=905671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:16
chr2	905672	.	T	.	.	LowGQX;LowMQ	END=905676	GT	./.
chr2	905677	.	T	.	.	LowGQX	END=905749	GT	./.
chr2	905750	.	C	.	.	LowGQX;LowMQ	END=905831	GT	./.
chr2	905832	.	T	.	.	LowGQX	END=905891	GT	./.
chr2	905892	.	C	.	.	LowGQX	END=905913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	905914	.	G	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	905915	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	905916	.	T	.	.	LowGQX	END=905945	GT	./.
chr2	946609	.	C	.	.	LowGQX	END=946627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	946628	.	G	.	.	LowGQX	END=946696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	946697	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr2	946698	.	C	.	.	LowGQX	END=946708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	946709	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr2	946710	.	G	.	.	LowGQX	END=946714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	946715	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:60
chr2	946716	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr2	946717	.	C	.	.	LowGQX	END=946719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	946720	.	G	.	.	LowGQX	END=946723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr2	946724	.	A	.	36.01	LowGQX	DP=6;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:6:6.02:60:6
chr2	946725	.	C	.	.	LowGQX	END=946726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr2	946727	.	C	.	.	LowGQX	END=946728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	946729	.	A	.	.	LowGQX	END=946731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:60
chr2	946732	.	G	.	.	LowGQX	END=946733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	946734	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr2	946735	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr2	946736	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr2	946737	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr2	946738	.	T	.	.	LowGQX	END=946741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr2	946742	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr2	946743	.	G	.	.	LowGQX	END=946746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:60
chr2	946747	.	C	.	.	LowGQX	END=946755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	946756	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr2	946757	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr2	946758	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr2	946759	.	G	.	.	LowGQX	END=946760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr2	946761	.	G	.	.	LowGQX	END=946762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	946763	.	G	.	.	LowGQX	END=946768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	1079203	.	G	.	.	PASS	END=1079223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	1079224	.	G	.	.	PASS	END=1079319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	1079320	.	C	T	978.52	PASS	BaseQRankSum=0.539;DP=106;Dels=0.00;FS=6.781;HRun=0;HaplotypeScore=10.5193;MQ=60;MQ0=0;MQRankSum=0.966;QD=9.23;ReadPosRankSum=-0.597;SB=-348.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:64,42:106:99:1009,0,1612:60:99:0.396
chr2	1079321	.	G	.	.	PASS	END=1079341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	1093860	.	T	.	.	PASS	END=1093888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	1093889	.	C	.	.	PASS	END=1093908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	1093909	.	C	.	.	PASS	END=1093954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	1093955	.	C	.	.	PASS	END=1093959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	1094018	.	T	.	.	PASS	END=1094074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	1094075	.	A	.	.	PASS	END=1094104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	1094105	.	A	.	.	PASS	END=1094117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	1099000	.	T	.	.	LowGQX	END=1099159	GT	./.
chr2	1133227	.	C	.	.	PASS	END=1133309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	1133310	.	G	.	.	PASS	END=1133379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr2	1133425	.	T	.	.	PASS	END=1133453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr2	1133454	.	G	.	.	PASS	END=1133501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr2	1133502	.	G	.	.	PASS	END=1133524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr2	1161173	.	T	.	.	PASS	END=1161297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	1161298	.	C	.	.	PASS	END=1161327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	1168774	.	G	.	.	PASS	END=1168788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	1168789	.	C	.	.	PASS	END=1168823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	1168824	.	C	.	.	PASS	END=1168869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	1168870	.	G	.	.	PASS	END=1168873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	1204788	.	G	.	.	PASS	END=1204828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	1204829	.	G	.	.	PASS	END=1204858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	1204859	.	C	.	.	PASS	END=1204882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	1204883	.	T	.	.	PASS	END=1204916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr2	1241659	.	G	.	.	PASS	END=1241783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:250:99:60
chr2	1241784	.	C	.	.	PASS	END=1241789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr2	1243479	.	T	.	.	PASS	END=1243560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	1243561	.	T	.	.	PASS	END=1243578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	1251098	.	G	.	.	PASS	END=1251144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	1251145	.	C	.	.	PASS	END=1251203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	1251204	.	A	.	.	PASS	END=1251215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	1263128	.	T	.	.	PASS	END=1263204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr2	1263205	.	G	.	.	PASS	END=1263227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr2	1271136	.	G	.	.	PASS	END=1271151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr2	1271152	.	G	.	.	PASS	END=1271299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:60
chr2	1271300	.	A	.	.	PASS	END=1271327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr2	1271328	.	A	.	.	PASS	END=1271343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr2	1312262	.	C	.	.	PASS	END=1312287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr2	1312288	.	G	.	.	PASS	END=1312361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	1320036	.	G	.	.	PASS	END=1320092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	1320093	.	A	.	.	PASS	END=1320139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	1320140	.	A	.	.	PASS	END=1320147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	1371114	.	G	.	.	PASS	END=1371141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	1371142	.	G	.	.	PASS	END=1371161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	1371162	.	C	.	.	PASS	END=1371199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	1371200	.	T	.	.	PASS	END=1371246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr2	1418130	.	G	.	.	PASS	END=1418160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	1418161	.	C	.	.	PASS	END=1418227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	1418228	.	A	.	.	PASS	END=1418294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	1418295	.	G	.	.	PASS	END=1418306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	1418307	.	T	.	.	PASS	END=1418325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	1426766	.	G	.	.	PASS	END=1426867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	1426868	.	T	.	.	PASS	END=1426895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	1426896	.	G	.	.	PASS	END=1426914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	1426915	.	A	.	.	PASS	END=1426935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:96:60
chr2	1426936	.	C	.	.	PASS	END=1426952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	1437159	.	A	.	.	PASS	END=1437230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr2	1437231	.	C	.	.	PASS	END=1437273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:85:60
chr2	1437274	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:73:60
chr2	1437275	.	C	.	.	PASS	END=1437288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	1437289	.	A	.	.	PASS	END=1437383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	1437384	.	T	.	.	PASS	END=1437402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	1437403	.	T	.	.	PASS	END=1437409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	1437410	.	C	T	1427.49	PASS	BaseQRankSum=0.510;DP=51;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.238;QD=27.99;ReadPosRankSum=-0.985;SB=-426.10	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,50:51:81.25:1460,81,0:60:81:0.980
chr2	1437411	.	G	.	.	PASS	END=1437426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	1437427	.	G	.	.	PASS	END=1437430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr2	1439973	.	G	.	.	PASS	END=1440048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr2	1440049	.	C	.	.	PASS	END=1440107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	1440108	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:75:60
chr2	1440109	.	T	.	.	PASS	END=1440111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	1440112	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:72:60
chr2	1440113	.	C	.	.	PASS	END=1440130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	1440131	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:61:60
chr2	1440132	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:99:60
chr2	1440133	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:57:60
chr2	1440134	.	A	.	.	PASS	END=1440155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	1440156	.	G	.	.	PASS	END=1440180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	1440181	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:30:60
chr2	1440182	.	T	.	.	PASS	END=1440198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr2	1440199	.	T	.	.	PASS	END=1440204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	1440205	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:0:60
chr2	1440206	.	A	.	.	PASS	END=1440207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr2	1442559	.	T	.	.	LowGQX	END=1442579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	1442580	.	G	.	.	LowGQX	.	GT	./.
chr2	1442581	.	A	.	.	LowGQX	END=1442607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	1442608	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	1442609	.	C	.	.	LowGQX	END=1442658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	1457415	.	T	.	.	PASS	END=1457418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:61
chr2	1457419	.	T	.	.	PASS	END=1457426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:61
chr2	1457427	.	T	.	.	PASS	END=1457429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:61
chr2	1457430	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:6:61
chr2	1457431	.	C	.	.	PASS	END=1457443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr2	1457444	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:45:60
chr2	1457445	.	T	.	.	PASS	END=1457468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	1457469	.	C	.	.	PASS	END=1457475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr2	1457476	.	A	.	.	PASS	END=1457494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr2	1457495	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:70:60
chr2	1457496	.	G	.	.	PASS	END=1457520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:87:60
chr2	1457521	.	G	.	.	PASS	END=1457617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:97:60
chr2	1457618	.	T	.	.	PASS	END=1457636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:87:60
chr2	1457637	.	C	.	.	PASS	END=1457646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr2	1459797	.	T	.	.	PASS	END=1459804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr2	1459805	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:99:60
chr2	1459806	.	A	G	1356.60	PASS	DP=55;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=2.8408;MQ=60;MQ0=0;QD=24.67;SB=-759.84	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,55:55:99:1390,102,0:60:99:1.000
chr2	1459807	.	G	.	.	PASS	END=1459818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	1459819	.	G	.	.	PASS	END=1459848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	1459849	.	T	.	.	PASS	END=1459951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	1459952	.	C	.	.	PASS	END=1459966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	1459967	.	A	.	.	PASS	END=1459998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:78:60
chr2	1459999	.	G	.	.	PASS	END=1460046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr2	1460047	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:48:60
chr2	1460048	.	C	.	.	PASS	END=1460057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr2	1460058	.	A	.	.	PASS	END=1460077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr2	1460078	.	T	.	.	PASS	END=1460105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr2	1480807	.	C	.	.	PASS	END=1480827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	1480828	.	G	.	.	PASS	END=1480858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	1480859	.	T	.	.	PASS	END=1480884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	1480885	.	G	.	.	PASS	END=1480902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	1480903	.	T	.	.	PASS	END=1480935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	1480936	.	G	.	.	PASS	END=1481049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	1481050	.	A	.	.	PASS	END=1481082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	1481083	.	C	.	.	PASS	END=1481100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	1481101	.	C	.	.	PASS	END=1481154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	1481155	.	G	T	2837.47	PASS	BaseQRankSum=2.018;DP=98;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=15.1507;MQ=60;MQ0=0;MQRankSum=-0.520;QD=28.95;ReadPosRankSum=-0.368;SB=-1368.35	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,95:98:99:2870,223,0:60:99:0.979
chr2	1481156	.	C	.	.	PASS	END=1481211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	1481212	.	G	.	.	PASS	END=1481230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	1481231	.	G	C	3418.53	PASS	DP=123;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.8935;MQ=60;MQ0=0;QD=27.79;SB=-2110.86	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,123:123:99:3419,250,0:60:99:1.000
chr2	1481232	.	C	.	.	PASS	END=1481312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	1481313	.	T	.	.	PASS	END=1481345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	1481346	.	G	.	.	PASS	END=1481375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	1481376	.	G	.	.	PASS	END=1481397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	1481398	.	G	.	.	PASS	END=1481401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr2	1481402	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:72:60
chr2	1481403	.	G	.	.	PASS	END=1481420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr2	1481421	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:43:60
chr2	1481422	.	G	.	.	PASS	END=1481427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr2	1488317	.	C	.	.	PASS	END=1488320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	1488321	.	C	.	.	PASS	END=1488331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr2	1488332	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:57:60
chr2	1488333	.	T	.	.	PASS	END=1488351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr2	1488352	.	T	.	.	PASS	END=1488366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:83:60
chr2	1488367	.	G	.	.	PASS	END=1488406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	1488407	.	C	.	.	PASS	END=1488435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	1488436	.	C	.	.	PASS	END=1488545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	1488546	.	C	.	.	PASS	END=1488569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	1488570	.	T	.	.	PASS	END=1488594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:96:60
chr2	1488595	.	T	.	.	PASS	END=1488619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	1488620	.	C	.	.	PASS	END=1488637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr2	1488638	.	C	.	.	PASS	END=1488650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr2	1488651	.	T	.	.	PASS	END=1488655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr2	1488656	.	C	.	.	PASS	END=1488657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	1488658	.	C	.	.	PASS	END=1488677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr2	1491542	.	C	.	.	PASS	END=1491545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr2	1491546	.	A	.	.	PASS	END=1491552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr2	1491553	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:32:60
chr2	1491554	.	G	.	.	PASS	END=1491563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr2	1491564	.	G	.	.	PASS	END=1491570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr2	1491571	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:72:60
chr2	1491572	.	C	.	.	PASS	END=1491600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	1491601	.	G	.	.	PASS	END=1491622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	1491623	.	T	.	.	PASS	END=1491687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	1491688	.	T	.	.	PASS	END=1491714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	1491715	.	G	.	.	PASS	END=1491755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	1491756	.	G	.	.	PASS	END=1491787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	1491788	.	A	.	.	PASS	END=1491814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr2	1497523	.	A	.	.	PASS	END=1497537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	1497538	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:33:60
chr2	1497539	.	T	.	.	PASS	END=1497548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr2	1497549	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:57:60
chr2	1497550	.	C	.	.	PASS	END=1497554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr2	1497555	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:45:60
chr2	1497556	.	A	.	.	PASS	END=1497567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr2	1497568	.	G	.	.	PASS	END=1497583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	1497584	.	G	.	.	PASS	END=1497621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:78:60
chr2	1497622	.	C	.	.	PASS	END=1497638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	1497639	.	G	.	.	PASS	END=1497668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	1497669	.	A	.	.	PASS	END=1497705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	1497706	.	T	.	.	PASS	END=1497766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	1497767	.	C	.	.	PASS	END=1497803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	1497804	.	G	.	.	PASS	END=1497825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	1497826	.	A	.	.	PASS	END=1497845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	1497846	.	C	.	.	PASS	END=1497861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr2	1497862	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:96:60
chr2	1499710	.	C	.	.	PASS	END=1499719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr2	1499720	.	T	.	.	PASS	END=1499779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	1499780	.	C	.	.	PASS	END=1499795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	1499796	.	C	.	.	PASS	END=1499840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	1499841	.	G	.	.	PASS	END=1499856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	1499857	.	C	.	.	PASS	END=1499938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	1499939	.	C	.	.	PASS	END=1499988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	1499989	.	C	.	.	PASS	END=1499999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	1500000	.	A	.	.	PASS	END=1500005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	1500006	.	C	.	.	PASS	END=1500020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:96:60
chr2	1500316	.	G	.	.	PASS	END=1500341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	1500342	.	A	.	.	PASS	END=1500417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	1500418	.	G	.	.	PASS	END=1500470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	1500471	.	C	.	.	PASS	END=1500492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	1500493	.	C	.	.	PASS	END=1500528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr2	1500529	.	T	.	.	PASS	END=1500557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	1500558	.	C	.	.	PASS	END=1500571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	1500572	.	C	.	.	PASS	END=1500580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	1500581	.	T	.	.	PASS	END=1500588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr2	1507524	.	C	.	.	LowGQX	END=1507528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	1507529	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr2	1507530	.	T	.	.	LowGQX	END=1507533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	1507534	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	1507535	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr2	1507536	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	1507537	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:21:60
chr2	1507538	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	1507539	.	T	.	.	LowGQX	END=1507541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	1507542	.	T	.	.	PASS	END=1507543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	1507544	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr2	1507545	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	1507546	.	C	.	.	LowGQX	END=1507551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	1507552	.	T	.	.	PASS	END=1507553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	1507554	.	C	.	.	LowGQX	END=1507559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	1507560	.	T	.	.	PASS	END=1507572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	1507573	.	G	.	.	PASS	END=1507584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr2	1507585	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:3:60
chr2	1507586	.	C	.	.	PASS	END=1507592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	1507593	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr2	1507594	.	C	.	.	PASS	END=1507596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	1507597	.	G	.	.	PASS	END=1507613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	1507614	.	A	.	.	PASS	END=1507615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr2	1507616	.	G	.	.	PASS	END=1507620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	1507621	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr2	1507622	.	C	.	.	PASS	END=1507623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr2	1507669	.	A	.	.	PASS	END=1507700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr2	1507701	.	G	.	.	PASS	END=1507728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	1507729	.	A	.	.	PASS	END=1507736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	1507737	.	G	.	.	PASS	END=1507746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	1507747	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:100:69:60
chr2	1507748	.	C	.	.	PASS	END=1507761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	1507762	.	C	.	.	PASS	END=1507816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	1507817	.	C	.	.	PASS	END=1507902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr2	1520604	.	T	.	.	PASS	END=1520621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	1520622	.	G	.	.	PASS	END=1520660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	1520661	.	G	.	.	PASS	END=1520703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	1520704	.	T	.	.	PASS	END=1520805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	1544315	.	C	.	.	PASS	END=1544333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	1544334	.	T	.	.	PASS	END=1544357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	1544358	.	T	.	.	PASS	END=1544381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	1544382	.	A	.	.	PASS	END=1544457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	1544458	.	C	.	.	PASS	END=1544491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	1544492	.	G	.	.	PASS	END=1544507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	1544508	.	A	.	.	PASS	END=1544521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	1544522	.	C	.	.	PASS	END=1544546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr2	1544547	.	G	.	.	PASS	END=1544549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr2	1544550	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:60:60
chr2	1544551	.	C	.	.	PASS	END=1544555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr2	1544556	.	T	.	.	PASS	END=1544574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	1544575	.	G	.	.	PASS	END=1544597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr2	1544598	.	A	.	.	PASS	END=1544602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:39:60
chr2	1544603	.	G	.	.	PASS	END=1544616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr2	1544617	.	G	A	172.79	SB	BaseQRankSum=1.186;DP=11;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.387;QD=15.71;ReadPosRankSum=1.031;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:5,6:11:99:203,0,157:60:99:0.545
chr2	1544618	.	T	.	.	PASS	END=1544626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	1544627	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr2	1544628	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	1544629	.	C	.	.	LowGQX	END=1544674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	1544675	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr2	1544676	.	G	.	.	LowGQX	END=1544680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	1544681	.	T	.	.	LowGQX	END=1544684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	1546140	.	A	.	.	PASS	END=1546206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	1546207	.	G	.	.	PASS	END=1546264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	1546265	.	C	.	.	PASS	END=1546273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	1546274	.	A	.	.	PASS	END=1546278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	1546279	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:76:60
chr2	1546280	.	A	.	.	PASS	END=1546304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr2	1546305	.	C	.	.	PASS	END=1546314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr2	1546315	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:66:60
chr2	1546316	.	A	.	.	PASS	END=1546326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	1546327	.	C	G	505.09	SB	BaseQRankSum=-0.034;DP=34;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=0.413;QD=14.86;ReadPosRankSum=0.310;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:17,17:34:99:535,0,546:60:99:0.500
chr2	1546328	.	G	.	.	PASS	END=1546360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:87:60
chr2	1546361	.	G	T	393.82	SB	BaseQRankSum=1.087;DP=31;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=0.613;QD=12.70;ReadPosRankSum=-0.889;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:16,15:31:99:424,0,528:60:99:0.484
chr2	1546362	.	T	.	.	PASS	END=1546364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:90:60
chr2	1637965	.	C	.	.	PASS	END=1637993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	1637994	.	C	.	.	PASS	END=1638052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	1638053	.	T	.	.	PASS	END=1638095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	1639147	.	T	.	.	PASS	END=1639250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	1639251	.	C	.	.	PASS	END=1639266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	1639267	.	A	.	.	PASS	END=1639268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	1639269	.	T	.	.	PASS	END=1639270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	1639271	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:74:60
chr2	1639272	.	G	.	.	PASS	END=1639287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr2	1639288	.	C	.	.	PASS	END=1639293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr2	1639294	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:39:60
chr2	1639295	.	T	.	.	PASS	END=1639326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	1639327	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:30:60
chr2	1639328	.	A	.	.	PASS	END=1639337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	1639338	.	A	.	.	PASS	END=1639339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	1639340	.	C	.	.	PASS	END=1639343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr2	1642607	.	A	.	.	PASS	END=1642623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	1642624	.	T	.	.	PASS	END=1642698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	1642699	.	T	.	.	PASS	END=1642739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	1642740	.	G	.	.	PASS	END=1642750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	1643073	.	C	.	.	PASS	END=1643175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	1643176	.	T	.	.	PASS	END=1643193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	1643194	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:67:99:60
chr2	1647139	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:73:60
chr2	1647140	.	C	.	.	PASS	END=1647165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	1647166	.	A	.	.	PASS	END=1647170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	1647171	.	T	C	2117.85	PASS	DP=77;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.7877;MQ=60;MQ0=0;QD=27.50;SB=-951.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,75:77:99:2151,160,0:60:99:1.000
chr2	1647172	.	A	.	.	PASS	END=1647194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	1647195	.	G	.	.	PASS	END=1647306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	1647307	.	A	.	.	PASS	END=1647335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	1647336	.	C	.	.	PASS	END=1647348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	1648389	.	C	.	.	PASS	END=1648391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr2	1648392	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:55:60
chr2	1648393	.	T	.	.	PASS	END=1648397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:77:60
chr2	1648398	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:71:60
chr2	1648399	.	T	.	.	PASS	END=1648414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:77:60
chr2	1648415	.	A	.	.	PASS	END=1648438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	1648439	.	G	.	.	PASS	END=1648524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	1651943	.	C	.	.	PASS	END=1651997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	1651998	.	A	.	.	PASS	END=1652020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	1652021	.	G	.	.	PASS	END=1652039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr2	1652040	.	T	.	.	PASS	END=1652113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr2	1652114	.	C	.	.	PASS	END=1652267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:284:99:60
chr2	1652268	.	T	.	.	PASS	END=1652350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:287:99:60
chr2	1652351	.	G	.	.	PASS	END=1652457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:259:99:60
chr2	1652458	.	G	.	.	PASS	END=1652556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:278:99:60
chr2	1652557	.	C	.	.	PASS	END=1652595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr2	1652596	.	T	.	.	PASS	END=1652618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	1652619	.	G	.	.	PASS	END=1652659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	1652660	.	G	A	1420.60	PASS	BaseQRankSum=-1.634;DP=125;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=26.6192;MQ=60;MQ0=0;MQRankSum=-0.740;QD=11.36;ReadPosRankSum=-0.945;SB=-422.48	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:61,63:125:99:1451,0,1795:60:99:0.508
chr2	1652661	.	T	.	.	PASS	END=1652686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	1652687	.	C	.	.	PASS	END=1652784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	1652785	.	C	.	.	PASS	END=1652821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	1652822	.	T	G	3837.45	PASS	DP=128;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.4055;MQ=60;MQ0=0;QD=29.98;SB=-2051.93	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,128:128:99:3837,292,0:60:99:1.000
chr2	1652823	.	A	.	.	PASS	END=1652888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	1652889	.	C	.	.	PASS	END=1652934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	1652935	.	C	.	.	PASS	END=1652991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	1652992	.	C	.	.	PASS	END=1653005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	1653006	.	T	.	.	PASS	END=1653039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	1653040	.	G	.	.	PASS	END=1653073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr2	1653074	.	G	.	.	PASS	END=1653143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:247:99:60
chr2	1653144	.	A	.	.	PASS	END=1653289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:292:99:60
chr2	1653290	.	G	.	.	PASS	END=1653338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr2	1653339	.	T	.	.	PASS	END=1653421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr2	1653422	.	A	.	.	PASS	END=1653453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	1653454	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:125:99:60
chr2	1657310	.	G	.	.	PASS	END=1657340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:77:60
chr2	1657341	.	G	.	.	PASS	END=1657356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	1657357	.	T	.	.	PASS	END=1657430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	1657431	.	C	.	.	PASS	END=1657484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	1657485	.	T	.	.	PASS	END=1657506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	1657507	.	T	.	.	PASS	END=1657516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	1657517	.	A	.	.	PASS	END=1657518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	1657519	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:33:60
chr2	1657520	.	G	.	.	PASS	END=1657532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr2	1657533	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:45:60
chr2	1657534	.	A	.	.	PASS	END=1657557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	1658166	.	C	.	.	PASS	END=1658197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:97:60
chr2	1658198	.	G	.	.	PASS	END=1658209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	1658210	.	G	.	.	PASS	END=1658280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	1664652	.	C	.	.	PASS	END=1664653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	1664654	.	A	G	1499.94	PASS	DP=48;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.8404;MQ=60;MQ0=0;QD=31.25;SB=-250.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,48:48:99:1533,120,0:60:99:1.000
chr2	1664655	.	T	.	.	PASS	END=1664670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	1664671	.	T	.	.	PASS	END=1664708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	1664709	.	C	.	.	PASS	END=1664795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	1664796	.	A	.	.	PASS	END=1664809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	1665843	.	C	.	.	PASS	END=1665911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	1665912	.	C	.	.	PASS	END=1665954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	1665955	.	G	.	.	PASS	END=1665969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	1667376	.	C	.	.	PASS	END=1667407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	1667408	.	C	.	.	PASS	END=1667437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	1667438	.	G	.	.	PASS	END=1667514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	1667515	.	G	.	.	PASS	END=1667535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	1668729	.	C	.	.	PASS	END=1668793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	1668794	.	C	.	.	PASS	END=1668823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	1668824	.	C	.	.	PASS	END=1668857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	1669985	.	C	.	.	PASS	END=1670009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	1670010	.	C	.	.	PASS	END=1670043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	1670044	.	C	.	.	PASS	END=1670077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	1670078	.	T	.	.	PASS	END=1670140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	1670141	.	T	.	.	PASS	END=1670184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	1670185	.	G	.	.	PASS	END=1670196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	1670197	.	C	.	.	PASS	END=1670208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	1670209	.	C	.	.	PASS	END=1670216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	1670217	.	G	.	.	PASS	END=1670229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr2	1670230	.	C	.	.	PASS	END=1670254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr2	1670255	.	C	.	.	PASS	END=1670258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr2	1677414	.	C	.	.	PASS	END=1677420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr2	1677421	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:75:60
chr2	1677422	.	C	.	.	PASS	END=1677442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr2	1677443	.	C	.	.	PASS	END=1677476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	1677477	.	G	.	.	PASS	END=1677491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	1677492	.	A	.	.	PASS	END=1677584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	1680668	.	A	.	.	PASS	END=1680752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	1680753	.	A	.	.	PASS	END=1680770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:91:60
chr2	1680771	.	G	.	.	PASS	END=1680788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr2	1680789	.	T	.	.	PASS	END=1680794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	1680795	.	T	.	.	PASS	END=1680801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr2	1680802	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:48:60
chr2	1680803	.	G	.	.	PASS	END=1680813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr2	1680814	.	T	.	.	PASS	END=1680816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr2	1683964	.	C	.	.	PASS	END=1683991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	1683992	.	T	.	.	PASS	END=1684016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	1684017	.	T	.	.	PASS	END=1684050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	1684051	.	T	.	.	PASS	END=1684111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	1684112	.	G	.	.	PASS	END=1684134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	1687404	.	A	.	.	PASS	END=1687422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr2	1687423	.	C	.	.	PASS	END=1687517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	1687518	.	T	.	.	PASS	END=1687524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	1687525	.	C	.	.	PASS	END=1687526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:72:60
chr2	1687527	.	A	.	.	PASS	END=1687556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	1687798	.	T	.	.	PASS	END=1687835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr2	1687836	.	A	.	.	PASS	END=1687866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	1687867	.	G	.	.	PASS	END=1687893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	1687894	.	A	.	.	PASS	END=1687957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	1691400	.	T	.	.	PASS	END=1691442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	1691443	.	T	.	.	PASS	END=1691496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	1691497	.	A	.	.	PASS	END=1691499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	1695646	.	T	.	.	PASS	END=1695780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	1695781	.	A	.	.	PASS	END=1695805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	1696272	.	T	.	.	LowGQX	END=1696371	GT	./.
chr2	1696791	.	A	.	.	PASS	END=1696882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	1696883	.	C	.	.	PASS	END=1696906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	1748027	.	C	.	.	PASS	END=1748068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	1748069	.	C	.	.	PASS	END=1748111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	1748112	.	C	.	.	PASS	END=1748185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	1748186	.	C	.	.	PASS	END=1748221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:96:60
chr2	1748222	.	G	.	.	PASS	END=1748233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:80:60
chr2	1748234	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr2	1748235	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:99:60
chr2	1794963	.	A	.	.	LowGQX	END=1795062	GT	./.
chr2	1795638	.	T	.	.	PASS	END=1795668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	1795669	.	T	.	.	PASS	END=1795713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	1795714	.	T	.	.	PASS	END=1795779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	1796092	.	C	.	.	PASS	END=1796108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	1796109	.	A	.	.	PASS	END=1796134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	1796135	.	C	.	.	PASS	END=1796200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	1796201	.	T	.	.	PASS	END=1796232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	1796233	.	T	.	.	PASS	END=1796236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	1805461	.	C	.	.	PASS	END=1805488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	1805489	.	A	G	988.26	PASS	BaseQRankSum=0.628;DP=84;Dels=0.00;FS=1.867;HRun=0;HaplotypeScore=4.8401;MQ=60;MQ0=0;MQRankSum=1.516;QD=11.77;ReadPosRankSum=1.372;SB=-585.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:45,39:84:99:1018,0,1095:60:99:0.464
chr2	1805490	.	T	.	.	PASS	END=1805565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	1805566	.	C	.	.	PASS	END=1805571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	1812844	.	T	.	.	PASS	END=1812883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	1812884	.	C	.	.	PASS	END=1812940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	1812941	.	T	.	.	PASS	END=1812943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	1842920	.	C	.	.	PASS	END=1842928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	1842929	.	T	.	.	PASS	END=1842954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr2	1842955	.	C	.	.	PASS	END=1842967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:247:99:60
chr2	1842968	.	T	C	3348.02	PASS	BaseQRankSum=2.613;DP=294;Dels=0.00;FS=0.471;HRun=2;HaplotypeScore=17.2028;MQ=60;MQ0=0;MQRankSum=1.860;QD=11.39;ReadPosRankSum=0.035;SB=-1309.65	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:150,142:294:99:3348,0,3614:60:99:0.486
chr2	1842969	.	C	.	.	PASS	END=1843077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:294:99:60
chr2	1843078	.	C	.	.	PASS	END=1843103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr2	1843104	.	G	.	.	PASS	END=1843115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	1843116	.	T	.	.	PASS	END=1843140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	1843141	.	A	.	.	PASS	END=1843142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	1844524	.	G	.	.	PASS	END=1844563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	1844564	.	G	.	.	PASS	END=1844623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:59
chr2	1855394	.	G	.	.	PASS	END=1855487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	1855488	.	A	.	.	PASS	END=1855493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	1890295	.	T	.	.	PASS	END=1890387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	1890388	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:51:60
chr2	1890389	.	A	.	.	PASS	END=1890394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr2	1891259	.	C	.	.	PASS	END=1891311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	1891312	.	T	.	.	PASS	END=1891355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	1891356	.	T	.	.	PASS	END=1891381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	1893012	.	C	.	.	PASS	END=1893030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	1893031	.	G	.	.	PASS	END=1893068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	1893069	.	C	.	.	PASS	END=1893226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	1893227	.	T	.	.	PASS	END=1893249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	1895808	.	C	.	.	PASS	END=1895822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	1895823	.	G	.	.	PASS	END=1895865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	1895866	.	G	.	.	PASS	END=1895880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr2	1895881	.	G	.	.	PASS	END=1895911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr2	1895912	.	T	.	.	PASS	END=1896017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:246:99:60
chr2	1896018	.	T	.	.	PASS	END=1896050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr2	1896051	.	A	.	.	PASS	END=1896059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr2	1906851	.	C	.	.	PASS	END=1906879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	1906880	.	C	.	.	PASS	END=1906913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	1906914	.	C	.	.	PASS	END=1907004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	1907005	.	T	.	.	PASS	END=1907035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	1907036	.	A	.	.	PASS	END=1907055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	1907056	.	A	.	.	PASS	END=1907066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	1914011	.	C	.	.	PASS	END=1914023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	1914024	.	T	.	.	PASS	END=1914119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	1915787	.	C	.	.	PASS	END=1915886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	1920976	.	C	.	.	PASS	END=1921107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr2	1921108	.	G	.	.	PASS	END=1921111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr2	1926057	.	C	.	.	PASS	END=1926176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	1926177	.	T	.	.	PASS	END=1926368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	1926369	.	G	.	.	PASS	END=1926436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	1926437	.	G	T	6164.85	PASS	DP=190;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=18.9809;MQ=60;MQ0=0;QD=32.45;SB=-3252.68	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,189:190:99:6165,476,0:60:99:1.000
chr2	1926438	.	G	.	.	PASS	END=1926555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr2	1926556	.	A	.	.	PASS	END=1926581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr2	1926582	.	T	.	.	PASS	END=1926723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:309:99:60
chr2	1926724	.	C	.	.	PASS	END=1926870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr2	1926871	.	C	.	.	PASS	END=1926902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	1926903	.	T	.	.	PASS	END=1926978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	1926979	.	C	.	.	PASS	END=1927027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	1927028	.	A	.	.	PASS	END=1927035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	1946753	.	C	.	.	PASS	END=1946793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	1946794	.	T	.	108.23	PASS	DP=67;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:51:67:78.24:60:78
chr2	1946795	.	T	.	.	PASS	END=1946812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:77:60
chr2	1946813	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:68:74:60
chr2	1946814	.	C	.	.	PASS	END=1946821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:90:60
chr2	1946822	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:72:60
chr2	1946823	.	C	.	.	PASS	END=1946835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:81:60
chr2	1946836	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:72:60
chr2	1946837	.	T	.	.	PASS	END=1946854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:81:60
chr2	1946855	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:75:60
chr2	1946856	.	T	.	105.22	PASS	DP=65;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:47:65:75.23:60:75
chr2	1946857	.	C	.	.	PASS	END=1946872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	1946873	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:78:58:60
chr2	1946874	.	G	.	.	PASS	END=1946913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	1946914	.	A	G	2617.05	PASS	DP=97;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=47.5009;MQ=60;MQ0=0;QD=26.98;SB=-1258.68	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,94:97:99:2650,205,0:60:99:1.000
chr2	1946915	.	T	.	.	PASS	END=1946938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	1946939	.	C	.	.	PASS	END=1946956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	1946957	.	T	.	.	PASS	END=1946967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	1946968	.	C	T	2251.31	PASS	BaseQRankSum=2.895;DP=192;Dels=0.00;FS=5.546;HRun=1;HaplotypeScore=33.2901;MQ=60;MQ0=0;MQRankSum=-0.309;QD=11.73;ReadPosRankSum=0.464;SB=-1332.40	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:93,97:192:99:2281,0,2280:60:99:0.511
chr2	1946969	.	T	.	.	PASS	END=1947103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr2	1947104	.	A	.	.	PASS	END=1947106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	1982918	.	A	.	.	PASS	END=1982970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	1982971	.	C	.	.	PASS	END=1983002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	1983003	.	C	.	.	PASS	END=1983017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	1983260	.	A	.	.	PASS	END=1983289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	1983290	.	A	.	.	PASS	END=1983332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr2	1983333	.	A	.	.	PASS	END=1983359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr2	1983472	.	G	.	.	PASS	END=1983511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr2	1983512	.	C	.	.	PASS	END=1983567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	1983568	.	C	.	.	PASS	END=1983571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	3193103	.	A	.	.	LowGQX	END=3193281	GT	./.
chr2	3196183	.	A	.	.	LowGQX	END=3196194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3196195	.	A	.	.	LowGQX	.	GT	./.
chr2	3196196	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3196197	.	C	.	.	LowGQX	END=3196199	GT	./.
chr2	3196200	.	T	.	.	LowGQX	END=3196209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3196210	.	G	.	.	LowGQX	END=3196211	GT	./.
chr2	3196212	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3196213	.	C	.	.	LowGQX	.	GT	./.
chr2	3196214	.	A	.	.	LowGQX	END=3196229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3196230	.	T	.	.	LowGQX	.	GT	./.
chr2	3196231	.	C	.	.	LowGQX	END=3196247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3196248	.	G	.	.	LowGQX	.	GT	./.
chr2	3196249	.	G	.	.	LowGQX	END=3196253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3196254	.	G	.	.	LowGQX	END=3196255	GT	./.
chr2	3196256	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3196257	.	G	.	.	LowGQX	END=3196258	GT	./.
chr2	3196259	.	G	.	.	LowGQX	END=3196263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3196264	.	A	.	.	LowGQX	END=3196265	GT	./.
chr2	3196266	.	A	.	.	LowGQX	END=3196267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3196268	.	C	.	.	LowGQX	.	GT	./.
chr2	3196269	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3196270	.	T	.	.	LowGQX	.	GT	./.
chr2	3196271	.	G	.	.	LowGQX	END=3196275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3196276	.	A	.	.	LowGQX	.	GT	./.
chr2	3196277	.	A	.	.	LowGQX	END=3196297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	3196298	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	3196299	.	C	.	.	LowGQX	END=3196304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	3196305	.	G	.	.	LowGQX	.	GT	./.
chr2	3196306	.	T	.	.	LowGQX	END=3196308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	3196309	.	G	.	.	LowGQX	.	GT	./.
chr2	3196310	.	G	.	.	LowGQX	END=3196320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	3196321	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	3196322	.	A	.	.	LowGQX	END=3196327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3196328	.	G	.	.	LowGQX	.	GT	./.
chr2	3196329	.	T	.	.	LowGQX	END=3196335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3196336	.	A	.	.	LowGQX	END=3196337	GT	./.
chr2	3196338	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3196339	.	G	.	.	LowGQX	.	GT	./.
chr2	3196340	.	G	.	.	LowGQX	END=3196344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3196345	.	T	.	.	LowGQX	.	GT	./.
chr2	3196346	.	C	.	.	LowGQX	END=3196372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3197768	.	A	.	.	LowGQX	END=3197939	GT	./.
chr2	3200650	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3200651	.	C	.	.	LowGQX	.	GT	./.
chr2	3200652	.	C	.	.	LowGQX	END=3200664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3200665	.	T	.	.	LowGQX	.	GT	./.
chr2	3200666	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3200667	.	T	.	.	LowGQX	.	GT	./.
chr2	3200668	.	C	.	.	LowGQX	END=3200790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3212299	.	A	.	.	LowGQX	END=3212728	GT	./.
chr2	3217918	.	A	.	.	LowGQX	END=3218021	GT	./.
chr2	3261068	.	A	.	.	LowGQX	END=3261119	GT	./.
chr2	3261120	.	G	.	.	LowGQX	END=3261228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3278100	.	A	.	.	LowGQX	END=3278199	GT	./.
chr2	3322628	.	C	.	.	LowGQX	END=3322635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3322636	.	T	.	.	LowGQX	END=3322729	GT	./.
chr2	3341786	.	A	.	.	LowGQX	END=3341975	GT	./.
chr2	3356977	.	C	.	.	LowGQX	END=3357094	GT	./.
chr2	3358313	.	A	.	.	LowGQX	END=3358412	GT	./.
chr2	3381390	.	C	.	.	LowGQX	END=3381489	GT	./.
chr2	3391393	.	T	.	.	LowGQX	END=3391539	GT	./.
chr2	3391540	.	A	.	.	LowGQX	END=3391722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3391723	.	C	.	.	LowGQX	END=3391996	GT	./.
chr2	3391997	.	G	.	.	LowGQX	END=3392074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3392075	.	T	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	3392076	.	A	.	.	LowGQX	END=3392122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	3392123	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	3392124	.	G	.	.	LowGQX	END=3392179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3392180	.	C	.	.	LowGQX	END=3392443	GT	./.
chr2	3393454	.	G	.	.	LowGQX	END=3393479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3393480	.	C	.	.	LowGQX	.	GT	./.
chr2	3393481	.	C	.	.	LowGQX	END=3393524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3393525	.	A	.	.	LowGQX	END=3393553	GT	./.
chr2	3405546	.	A	.	.	LowGQX	END=3405666	GT	./.
chr2	3425423	.	G	.	.	LowGQX	END=3425513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3425514	.	G	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	3425515	.	T	.	.	LowGQX	END=3425522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3425650	.	A	.	.	LowGQX	END=3425679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3425680	.	A	.	.	LowGQX	.	GT	./.
chr2	3425681	.	C	.	.	LowGQX	END=3425701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3425702	.	A	.	.	LowGQX	.	GT	./.
chr2	3425703	.	G	.	.	LowGQX	END=3425708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3425709	.	G	.	.	LowGQX	.	GT	./.
chr2	3425710	.	G	.	.	LowGQX	END=3425714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3425715	.	G	.	.	LowGQX	END=3425757	GT	./.
chr2	3425758	.	C	.	.	LowGQX	END=3425767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3428254	.	A	.	.	LowGQX	END=3428436	GT	./.
chr2	3447497	.	A	.	.	LowGQX	END=3447664	GT	./.
chr2	3460826	.	T	.	.	LowGQX	END=3460985	GT	./.
chr2	3461319	.	A	.	.	LowGQX	END=3461478	GT	./.
chr2	3463944	.	G	.	.	LowGQX	END=3464017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3464018	.	T	.	.	LowGQX	END=3464112	GT	./.
chr2	3466629	.	C	.	.	LowGQX	END=3466757	GT	./.
chr2	3469366	.	A	.	.	LowGQX	END=3469479	GT	./.
chr2	3470025	.	G	.	.	LowGQX	END=3470164	GT	./.
chr2	3481413	.	A	.	.	LowGQX	END=3481568	GT	./.
chr2	3482611	.	T	.	.	LowGQX	END=3482710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3482988	.	A	.	.	LowGQX	END=3483234	GT	./.
chr2	3488490	.	G	.	.	LowGQX	END=3488649	GT	./.
chr2	3502732	.	T	.	.	LowGQX	END=3502901	GT	./.
chr2	3504356	.	C	.	.	LowGQX	END=3504709	GT	./.
chr2	3504710	.	G	.	.	LowGQX	END=3504766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3517626	.	A	.	.	LowGQX	END=3517749	GT	./.
chr2	3518527	.	T	.	.	LowGQX	END=3518680	GT	./.
chr2	3523096	.	G	.	.	LowGQX	END=3523260	GT	./.
chr2	3579845	.	C	.	.	LowGQX	END=3579931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3579932	.	G	.	.	LowGQX	END=3579944	GT	./.
chr2	3593369	.	C	.	.	LowGQX	END=3593468	GT	./.
chr2	3595519	.	A	.	.	LowGQX	END=3595535	GT	./.
chr2	3595536	.	C	.	.	LowGQX	END=3595606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3595607	.	A	.	.	LowGQX	.	GT	./.
chr2	3595608	.	C	.	.	LowGQX	END=3595628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3595629	.	A	.	.	LowGQX	END=3595630	GT	./.
chr2	3595631	.	C	.	.	LowGQX	END=3595647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3596223	.	A	.	.	LowGQX	END=3596322	GT	./.
chr2	3596626	.	T	.	.	LowGQX	END=3596725	GT	./.
chr2	3597961	.	A	.	.	LowGQX	END=3598064	GT	./.
chr2	3599732	.	A	.	.	LowGQX	END=3599773	GT	./.
chr2	3599774	.	C	.	.	LowGQX	END=3599800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3599801	.	A	.	.	LowGQX	.	GT	./.
chr2	3599802	.	T	.	.	LowGQX	END=3599813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3599814	.	C	.	.	LowGQX	.	GT	./.
chr2	3599815	.	T	.	.	LowGQX	END=3599822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3599823	.	C	.	.	LowGQX	.	GT	./.
chr2	3599824	.	C	.	.	LowGQX	END=3599830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3599831	.	A	.	.	LowGQX	.	GT	./.
chr2	3599832	.	T	.	.	LowGQX	END=3599842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3599843	.	A	.	.	LowGQX	.	GT	./.
chr2	3599844	.	C	.	.	LowGQX	END=3599852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3599853	.	T	.	.	LowGQX	.	GT	./.
chr2	3599854	.	T	.	.	LowGQX	END=3599869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3599870	.	C	.	.	LowGQX	.	GT	./.
chr2	3599871	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3599872	.	A	.	.	LowGQX	.	GT	./.
chr2	3599873	.	T	.	.	LowGQX	END=3599874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3599875	.	C	.	.	LowGQX	.	GT	./.
chr2	3599876	.	T	.	.	LowGQX	END=3599877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3599878	.	G	.	.	LowGQX	END=3599882	GT	./.
chr2	3599883	.	T	.	.	LowGQX	END=3599884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	3599885	.	T	.	.	LowGQX	.	GT	./.
chr2	3599886	.	T	.	.	LowGQX	END=3599887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	3599888	.	A	.	.	LowGQX	.	GT	./.
chr2	3599889	.	T	.	.	LowGQX	END=3599892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	3599893	.	C	.	.	LowGQX	.	GT	./.
chr2	3599894	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	3599895	.	T	.	.	LowGQX	.	GT	./.
chr2	3599896	.	G	.	.	LowGQX	END=3599900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	3604377	.	A	.	.	LowGQX	END=3604496	GT	./.
chr2	3605384	.	T	.	.	LowGQX	END=3605425	GT	./.
chr2	3605426	.	C	.	.	LowGQX	END=3605483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3605681	.	C	.	.	LowGQX	END=3605900	GT	./.
chr2	3623147	.	C	.	.	PASS	END=3623173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	3623174	.	G	.	.	PASS	END=3623264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	3623265	.	C	.	.	PASS	END=3623308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	3623309	.	A	.	124.66	PASS	DP=71;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:56:71:94.67:60:95
chr2	3623310	.	G	.	.	PASS	END=3623325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	3623356	.	G	.	.	PASS	END=3623443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	3623444	.	C	.	.	PASS	END=3623490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:93:60
chr2	3623491	.	T	.	.	PASS	END=3623529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	3624026	.	C	.	.	PASS	END=3624042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr2	3624043	.	A	.	.	PASS	END=3624086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr2	3624087	.	T	.	.	PASS	END=3624192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:60
chr2	3624193	.	T	.	.	PASS	END=3624228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr2	3624229	.	T	.	.	PASS	END=3624238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	3624239	.	C	.	.	PASS	END=3624294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	3625249	.	T	.	.	PASS	END=3625349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	3625350	.	A	.	.	PASS	END=3625408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	3625409	.	A	.	.	PASS	END=3625415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	3627649	.	C	.	.	PASS	END=3627684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	3627685	.	A	.	.	PASS	END=3627704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:59
chr2	3627705	.	C	.	.	PASS	END=3627730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:59
chr2	3627731	.	C	.	.	PASS	END=3627781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:59
chr2	3627782	.	A	.	.	PASS	END=3627838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:59
chr2	3627839	.	G	.	.	PASS	END=3627859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:59
chr2	3627860	.	C	.	.	PASS	END=3627887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	3627888	.	A	.	.	PASS	END=3627905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr2	3627906	.	A	.	.	PASS	END=3627912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr2	3627913	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:54:60
chr2	3627914	.	C	.	.	PASS	END=3627928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr2	3628344	.	A	.	.	PASS	END=3628424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	3628425	.	C	.	.	PASS	END=3628503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	3628504	.	A	.	.	PASS	END=3628515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr2	3628516	.	T	.	.	PASS	END=3628523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr2	3642421	.	C	.	.	PASS	END=3642497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	3642498	.	C	.	.	PASS	END=3642539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	3642540	.	A	.	.	PASS	END=3642579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr2	3642580	.	A	.	.	PASS	END=3642707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:282:99:60
chr2	3642708	.	C	.	.	PASS	END=3642750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr2	3642751	.	G	.	.	PASS	END=3642758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr2	3651194	.	A	.	.	PASS	END=3651278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	3651279	.	T	.	.	PASS	END=3651293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	3651904	.	G	.	.	PASS	END=3651940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr2	3651941	.	A	.	.	PASS	END=3652048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr2	3652049	.	C	.	.	PASS	END=3652078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr2	3652079	.	C	.	.	PASS	END=3652111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	3652600	.	A	.	.	LowGQX	END=3652641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3652642	.	G	.	.	LowGQX	END=3652699	GT	./.
chr2	3653728	.	A	.	.	PASS	END=3653810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	3653811	.	T	.	.	PASS	END=3653829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	3653830	.	C	.	.	PASS	END=3653833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	3660847	.	T	.	.	PASS	END=3660871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	3660872	.	C	.	.	PASS	END=3660993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr2	3660994	.	C	.	.	PASS	END=3661011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	3661012	.	T	.	.	PASS	END=3661023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	3673553	.	A	.	.	PASS	END=3673595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	3673596	.	T	.	.	PASS	END=3673647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	3673648	.	G	A	1020.27	PASS	BaseQRankSum=1.158;DP=96;Dels=0.00;FS=5.312;HRun=2;HaplotypeScore=7.7223;MQ=60;MQ0=0;MQRankSum=1.290;QD=10.63;ReadPosRankSum=0.813;SB=-582.71	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:52,44:96:99:1050,0,1270:60:99:0.458
chr2	3673649	.	T	.	.	PASS	END=3673690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	3673691	.	T	.	.	PASS	END=3673724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	3673725	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:72:60
chr2	3673726	.	T	.	.	PASS	END=3673733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	3685072	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:45:60
chr2	3685073	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:81:60
chr2	3685074	.	A	G	970.48	PASS	DP=35;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7771;MQ=60;MQ0=0;QD=27.73;SB=-319.70	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,35:35:78.24:1003,78,0:60:78:1.000
chr2	3685075	.	C	.	.	PASS	END=3685088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr2	3685089	.	C	.	.	PASS	END=3685105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr2	3685106	.	C	.	.	PASS	END=3685140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	3685141	.	G	.	.	PASS	END=3685202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	3685203	.	A	.	.	PASS	END=3685245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr2	3687805	.	T	.	.	PASS	END=3687828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr2	3687829	.	T	.	.	PASS	END=3687886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr2	3687887	.	T	.	.	PASS	END=3687899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr2	3687900	.	C	.	.	PASS	END=3687915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	3687916	.	A	.	.	PASS	END=3687934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr2	3687935	.	G	.	.	PASS	END=3687948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	3687949	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr2	3687950	.	A	.	.	PASS	END=3687956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	3687957	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr2	3687958	.	G	.	.	PASS	END=3687961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	3687962	.	T	.	.	LowGQX	END=3687964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr2	3687965	.	A	.	.	PASS	END=3687966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	3687967	.	A	.	.	LowGQX	END=3687969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr2	3687970	.	G	.	.	LowGQX	END=3687971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:0:60
chr2	3687972	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr2	3688790	.	G	.	.	PASS	END=3688914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:84:60
chr2	3688915	.	A	.	.	PASS	END=3688929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	3688930	.	A	.	.	PASS	END=3688968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	3688969	.	T	.	.	PASS	END=3688972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr2	3688973	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:33:0:60
chr2	3688974	.	C	.	.	PASS	END=3688993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	3688994	.	A	.	.	PASS	END=3689011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr2	3689012	.	A	.	.	PASS	END=3689022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr2	3690983	.	G	.	.	PASS	END=3690987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr2	3690988	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:51:60
chr2	3690989	.	G	.	.	PASS	END=3690995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr2	3690996	.	C	.	.	PASS	END=3691019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr2	3691020	.	C	.	.	PASS	END=3691034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr2	3691035	.	C	.	.	PASS	END=3691058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	3691059	.	G	.	.	PASS	END=3691091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	3691092	.	C	.	.	PASS	END=3691152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	3691153	.	T	.	.	PASS	END=3691180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	3691266	.	T	.	.	PASS	END=3691290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	3691291	.	C	.	.	PASS	END=3691319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	3691320	.	T	.	.	PASS	END=3691374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	3691375	.	G	.	.	PASS	END=3691410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr2	3691411	.	C	.	.	PASS	END=3691450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr2	3691451	.	G	.	.	PASS	END=3691533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:267:99:60
chr2	3691534	.	C	.	.	PASS	END=3691710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:327:99:60
chr2	3691711	.	C	.	.	PASS	END=3691807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:277:99:60
chr2	3691808	.	G	.	.	PASS	END=3691895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:349:99:60
chr2	3691896	.	G	.	.	PASS	END=3691948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:351:99:60
chr2	3691949	.	C	.	.	PASS	END=3691979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:281:99:60
chr2	3691980	.	C	.	.	PASS	END=3692037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr2	3692038	.	T	.	.	PASS	END=3692051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	3692052	.	T	.	.	PASS	END=3692083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	3692084	.	T	.	.	PASS	END=3692126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	3692127	.	A	.	.	PASS	END=3692146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	3692147	.	C	.	.	PASS	END=3692156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	3692157	.	A	.	.	PASS	END=3692163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr2	3692164	.	A	.	.	PASS	END=3692177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr2	3692178	.	T	.	.	PASS	END=3692183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	3692184	.	T	.	.	PASS	END=3692194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr2	3692195	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:30:60
chr2	3692196	.	A	.	.	PASS	END=3692207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	3692208	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:57:60
chr2	3692209	.	A	.	.	PASS	END=3692223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr2	3692224	.	T	.	.	PASS	END=3692234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr2	3718714	.	A	.	.	LowGQX	END=3718813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3721640	.	T	.	.	LowGQX	END=3721793	GT	./.
chr2	3726052	.	C	.	.	LowGQX	END=3726151	GT	./.
chr2	3727458	.	G	.	.	LowGQX	END=3727584	GT	./.
chr2	3729214	.	C	.	.	LowGQX	END=3729313	GT	./.
chr2	3730531	.	G	.	.	LowGQX	END=3730628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3730629	.	A	.	.	LowGQX	END=3730664	GT	./.
chr2	3743276	.	A	.	.	LowGQX	END=3743462	GT	./.
chr2	3743852	.	T	.	.	LowGQX	END=3743945	GT	./.
chr2	3743946	.	G	.	.	LowGQX	END=3743951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	3744937	.	G	.	.	LowGQX	END=3745046	GT	./.
chr2	3749101	.	G	.	.	LowGQX	END=3749226	GT	./.
chr2	3749952	.	G	.	.	LowGQX	END=3750153	GT	./.
chr2	3751442	.	T	.	.	LowGQX	END=3751628	GT	./.
chr2	3756115	.	G	.	.	LowGQX	END=3756214	GT	./.
chr2	3774582	.	T	.	.	LowGQX	END=3774597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3774598	.	A	.	.	LowGQX	.	GT	./.
chr2	3774599	.	C	.	.	LowGQX	END=3774681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3789510	.	T	.	.	LowGQX	END=3789613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3789614	.	T	.	.	LowGQX	.	GT	./.
chr2	3789615	.	C	.	.	LowGQX	END=3789631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3789632	.	T	.	.	LowGQX	.	GT	./.
chr2	3789633	.	T	.	.	LowGQX	END=3789638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3800139	.	A	.	.	LowGQX	END=3800238	GT	./.
chr2	3800352	.	G	.	.	LowGQX	END=3800490	GT	./.
chr2	3802153	.	T	.	.	LowGQX	END=3802185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	3802186	.	T	.	.	LowGQX	.	GT	./.
chr2	3802187	.	A	.	.	LowGQX	END=3802252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	3815302	.	C	.	.	LowGQX	END=3815470	GT	./.
chr2	3816900	.	G	.	.	LowGQX	END=3817001	GT	./.
chr2	3826382	.	A	.	.	LowGQX	END=3826481	GT	./.
chr2	4135932	.	A	.	.	LowGQX	END=4135957	GT	./.
chr2	4135958	.	C	.	.	LowGQX	END=4135959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	4135960	.	A	.	.	LowGQX	END=4135961	GT	./.
chr2	4135962	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	4135963	.	A	.	.	LowGQX	.	GT	./.
chr2	4135964	.	A	.	.	LowGQX	END=4135965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	4135966	.	T	.	.	LowGQX	.	GT	./.
chr2	4135967	.	C	.	.	LowGQX	END=4135974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	4135975	.	G	.	.	LowGQX	.	GT	./.
chr2	4135976	.	C	.	.	LowGQX	END=4135978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	4135979	.	G	.	.	LowGQX	.	GT	./.
chr2	4135980	.	T	.	.	LowGQX	END=4135989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	4135990	.	A	.	.	LowGQX	.	GT	./.
chr2	4135991	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	4135992	.	T	.	.	LowGQX	.	GT	./.
chr2	4135993	.	C	.	.	LowGQX	END=4135994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	4135995	.	T	.	.	LowGQX	.	GT	./.
chr2	4135996	.	C	.	.	LowGQX	END=4135998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	4135999	.	A	.	.	LowGQX	.	GT	./.
chr2	4136000	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	4136001	.	T	.	.	LowGQX	.	GT	./.
chr2	4136002	.	G	.	.	LowGQX	END=4136009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	4136010	.	A	.	.	LowGQX	.	GT	./.
chr2	4136011	.	G	.	.	LowGQX	END=4136026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	4136027	.	G	.	.	LowGQX	END=4136028	GT	./.
chr2	4136029	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	4136030	.	T	.	.	LowGQX	.	GT	./.
chr2	4136031	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	5832852	.	T	.	.	LowGQX	END=5834107	GT	./.
chr2	5834108	.	C	.	.	LowGQX	END=5834135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	5834136	.	A	.	.	LowGQX	.	GT	./.
chr2	5834137	.	C	.	.	LowGQX	END=5834140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	5834141	.	C	.	.	LowGQX	.	GT	./.
chr2	5834142	.	T	.	.	LowGQX	END=5834181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	6980700	.	G	.	.	LowGQX	END=6980809	GT	./.
chr2	6989929	.	G	.	.	LowGQX	END=6989939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	6989940	.	C	.	.	LowGQX	.	GT	./.
chr2	6989941	.	A	.	.	LowGQX	END=6989943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	6989944	.	A	.	.	LowGQX	.	GT	./.
chr2	6989945	.	T	.	.	LowGQX	END=6989987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	6989988	.	T	.	.	LowGQX	END=6990010	GT	./.
chr2	6990011	.	G	.	.	LowGQX	END=6990066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	6990067	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	6990068	.	G	.	.	LowGQX	END=6990093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	6990094	.	A	.	.	LowGQX	.	GT	./.
chr2	6990095	.	C	.	.	LowGQX	END=6990106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	6991576	.	C	.	.	LowGQX	END=6991816	GT	./.
chr2	7001313	.	A	.	.	LowGQX	END=7001427	GT	./.
chr2	7001428	.	C	.	.	LowGQX	END=7001435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7001436	.	A	.	.	LowGQX	.	GT	./.
chr2	7001437	.	C	.	.	LowGQX	END=7001467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7001468	.	A	.	.	LowGQX	.	GT	./.
chr2	7001469	.	G	.	.	LowGQX	END=7001480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7001481	.	G	.	.	LowGQX	.	GT	./.
chr2	7001482	.	T	.	.	LowGQX	END=7001495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7001496	.	A	.	.	LowGQX	.	GT	./.
chr2	7001497	.	C	.	.	LowGQX	END=7001507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7001508	.	T	.	.	LowGQX	.	GT	./.
chr2	7001509	.	G	.	.	LowGQX	END=7001518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7003593	.	A	.	.	LowGQX	END=7003711	GT	./.
chr2	7005151	.	A	.	.	LowGQX	END=7005155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7005156	.	C	.	.	LowGQX	.	GT	./.
chr2	7005157	.	T	.	.	LowGQX	END=7005162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7005163	.	A	.	.	LowGQX	.	GT	./.
chr2	7005164	.	C	.	.	LowGQX	END=7005169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7005170	.	G	.	.	LowGQX	.	GT	./.
chr2	7005171	.	G	.	.	LowGQX	END=7005174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7005175	.	G	.	.	LowGQX	END=7005829	GT	./.
chr2	7006004	.	C	.	.	LowGQX	END=7006176	GT	./.
chr2	7017930	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7017931	.	A	.	.	LowGQX	.	GT	./.
chr2	7017932	.	A	.	.	LowGQX	END=7017941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7017942	.	T	.	.	LowGQX	.	GT	./.
chr2	7017943	.	T	.	.	LowGQX	END=7017950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7017951	.	C	.	.	LowGQX	.	GT	./.
chr2	7017952	.	T	.	.	LowGQX	END=7017961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7017962	.	G	.	.	LowGQX	END=7017963	GT	./.
chr2	7017964	.	G	.	.	LowGQX	END=7017965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7017966	.	A	.	.	LowGQX	.	GT	./.
chr2	7017967	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7017968	.	C	.	.	LowGQX	.	GT	./.
chr2	7017969	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7017970	.	C	.	.	LowGQX	.	GT	./.
chr2	7017971	.	T	.	.	LowGQX	END=7017974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7017975	.	G	.	.	LowGQX	END=7017976	GT	./.
chr2	7017977	.	G	.	.	LowGQX	END=7017982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7017983	.	A	.	.	LowGQX	.	GT	./.
chr2	7017984	.	G	.	.	LowGQX	END=7017986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7017987	.	A	.	.	LowGQX	.	GT	./.
chr2	7017988	.	A	.	.	LowGQX	END=7017990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7017991	.	T	.	.	LowGQX	.	GT	./.
chr2	7017992	.	C	.	.	LowGQX	END=7018000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7018001	.	C	.	.	LowGQX	END=7018214	GT	./.
chr2	7018215	.	A	.	.	LowGQX	END=7018217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7018218	.	C	.	.	LowGQX	.	GT	./.
chr2	7018219	.	A	.	.	LowGQX	END=7018220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7018221	.	C	.	.	LowGQX	END=7018222	GT	./.
chr2	7018223	.	T	.	.	LowGQX	END=7018228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7018229	.	C	.	.	LowGQX	.	GT	./.
chr2	7018230	.	T	.	.	LowGQX	END=7018235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7018236	.	T	.	.	LowGQX	.	GT	./.
chr2	7018237	.	T	.	.	LowGQX	END=7018247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7018248	.	A	.	.	LowGQX	.	GT	./.
chr2	7018249	.	G	.	.	LowGQX	END=7018274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7018275	.	C	.	.	LowGQX	.	GT	./.
chr2	7018276	.	T	.	.	LowGQX	END=7018278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7018279	.	T	.	.	LowGQX	.	GT	./.
chr2	7019110	.	C	.	.	LowGQX	END=7019209	GT	./.
chr2	7023500	.	A	.	.	LowGQX	END=7023665	GT	./.
chr2	7027064	.	A	.	.	LowGQX	END=7027297	GT	./.
chr2	7030305	.	A	.	.	LowGQX	END=7030458	GT	./.
chr2	7033769	.	G	.	.	LowGQX	END=7033809	GT	./.
chr2	7033810	.	C	.	.	LowGQX	END=7033868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7035907	.	A	.	.	LowGQX	END=7036075	GT	./.
chr2	7137056	.	C	.	.	LowGQX	END=7137060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7137061	.	A	.	.	LowGQX	.	GT	./.
chr2	7137062	.	C	.	.	LowGQX	END=7137063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7137064	.	A	.	.	LowGQX	END=7137066	GT	./.
chr2	7137067	.	A	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	7137068	.	C	.	.	LowGQX	.	GT	./.
chr2	7137069	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7137070	.	A	.	.	LowGQX	.	GT	./.
chr2	7137071	.	G	.	.	LowGQX	END=7137072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7137073	.	T	.	.	LowGQX	.	GT	./.
chr2	7137074	.	A	.	.	LowGQX	END=7137075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7137076	.	C	.	.	LowGQX	.	GT	./.
chr2	7137077	.	G	.	.	LowGQX	END=7137081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7137082	.	A	.	.	LowGQX	END=7137083	GT	./.
chr2	7137084	.	C	.	.	LowGQX	END=7137088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7137089	.	A	.	.	LowGQX	.	GT	./.
chr2	7137090	.	C	.	.	LowGQX	END=7137091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7137092	.	T	.	.	LowGQX	.	GT	./.
chr2	7137093	.	G	.	.	LowGQX	END=7137097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7137098	.	T	.	.	LowGQX	.	GT	./.
chr2	7137099	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7137100	.	G	.	.	LowGQX	END=7137101	GT	./.
chr2	7137102	.	C	.	.	LowGQX	END=7137108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7137109	.	G	.	.	LowGQX	END=7137110	GT	./.
chr2	7137111	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7137112	.	T	.	.	LowGQX	.	GT	./.
chr2	7137113	.	C	.	.	LowGQX	END=7137114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7137115	.	T	.	.	LowGQX	.	GT	./.
chr2	7137116	.	G	.	.	LowGQX	END=7137128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7137129	.	T	.	.	LowGQX	.	GT	./.
chr2	7137130	.	G	.	.	LowGQX	END=7137135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7137136	.	T	.	.	LowGQX	.	GT	./.
chr2	7137137	.	A	.	.	LowGQX	END=7137145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7137146	.	A	.	.	LowGQX	.	GT	./.
chr2	7137147	.	G	.	.	LowGQX	END=7137194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7154528	.	T	.	.	LowGQX	END=7154691	GT	./.
chr2	7154824	.	G	.	.	LowGQX	END=7154923	GT	./.
chr2	7160602	.	A	.	.	LowGQX	END=7160813	GT	./.
chr2	7164498	.	A	.	.	LowGQX	END=7164649	GT	./.
chr2	7170252	.	C	.	.	LowGQX	END=7170351	GT	./.
chr2	7179758	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7179759	.	G	.	.	LowGQX	END=7179762	GT	./.
chr2	7179763	.	G	.	.	LowGQX	END=7179767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7179768	.	C	.	.	LowGQX	.	GT	./.
chr2	7179769	.	A	.	.	LowGQX	END=7179774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7179775	.	G	.	.	LowGQX	END=7179776	GT	./.
chr2	7179777	.	A	.	.	LowGQX	END=7179789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7179790	.	C	.	.	LowGQX	END=7179791	GT	./.
chr2	7179792	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7179793	.	C	.	.	LowGQX	END=7179794	GT	./.
chr2	7179795	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7179796	.	T	.	.	LowGQX	END=7179797	GT	./.
chr2	7179798	.	G	.	.	LowGQX	END=7179799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7179800	.	T	.	.	LowGQX	.	GT	./.
chr2	7179801	.	G	.	.	LowGQX	END=7179802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7179803	.	C	.	.	LowGQX	.	GT	./.
chr2	7179804	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7179805	.	T	.	.	LowGQX	.	GT	./.
chr2	7179806	.	C	.	.	LowGQX	END=7179814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7179815	.	T	.	.	LowGQX	.	GT	./.
chr2	7179816	.	A	.	.	LowGQX	END=7179819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7179820	.	C	.	.	LowGQX	.	GT	./.
chr2	7179821	.	T	.	.	LowGQX	END=7179826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7179827	.	C	.	.	LowGQX	.	GT	./.
chr2	7179828	.	T	.	.	LowGQX	END=7179830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7179831	.	C	.	.	LowGQX	.	GT	./.
chr2	7179832	.	T	.	.	LowGQX	END=7179837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7179838	.	C	.	.	LowGQX	END=7179840	GT	./.
chr2	7179841	.	T	.	.	LowGQX	END=7179849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7179850	.	T	.	.	LowGQX	.	GT	./.
chr2	7179851	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7179852	.	C	.	.	LowGQX	.	GT	./.
chr2	7179853	.	A	.	.	LowGQX	END=7179893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	7208326	.	G	.	.	LowGQX	END=7208425	GT	./.
chr2	7540646	.	C	.	.	LowGQX	END=7540745	GT	./.
chr2	8178686	.	A	.	.	LowGQX	END=8178734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	8178735	.	A	G	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	8178736	.	T	.	.	LowGQX	END=8178785	GT	./.
chr2	8822294	.	G	.	.	LowGQX	END=8822645	GT	./.
chr2	8822952	.	C	.	.	LowGQX	END=8823051	GT	./.
chr2	8866998	.	A	.	.	LowGQX	END=8867097	GT	./.
chr2	8870848	.	T	.	.	LowGQX	END=8871094	GT	./.
chr2	8871095	.	G	.	.	LowGQX	END=8871130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871131	.	T	.	.	LowGQX	.	GT	./.
chr2	8871132	.	T	.	.	LowGQX	END=8871147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871148	.	G	.	.	LowGQX	.	GT	./.
chr2	8871149	.	C	.	.	LowGQX	END=8871161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871162	.	A	.	.	LowGQX	.	GT	./.
chr2	8871163	.	G	.	.	LowGQX	END=8871169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871170	.	T	.	.	LowGQX	.	GT	./.
chr2	8871171	.	T	.	.	LowGQX	END=8871176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871177	.	A	.	.	LowGQX	.	GT	./.
chr2	8871178	.	G	.	.	LowGQX	END=8871180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871181	.	C	.	.	LowGQX	.	GT	./.
chr2	8871182	.	T	.	.	LowGQX	END=8871193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871194	.	A	.	.	LowGQX	.	GT	./.
chr2	8871195	.	G	.	.	LowGQX	END=8871196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871197	.	T	.	.	LowGQX	.	GT	./.
chr2	8871198	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871199	.	C	.	.	LowGQX	.	GT	./.
chr2	8871200	.	A	.	.	LowGQX	END=8871204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871205	.	G	.	.	LowGQX	.	GT	./.
chr2	8871206	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871207	.	A	.	.	LowGQX	.	GT	./.
chr2	8871208	.	G	.	.	LowGQX	END=8871211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871212	.	T	.	.	LowGQX	END=8871213	GT	./.
chr2	8871214	.	T	.	.	LowGQX	END=8871215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871216	.	C	.	.	LowGQX	.	GT	./.
chr2	8871217	.	T	.	.	LowGQX	END=8871226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871227	.	A	.	.	LowGQX	END=8871229	GT	./.
chr2	8871230	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871231	.	A	.	.	LowGQX	.	GT	./.
chr2	8871232	.	A	.	.	LowGQX	END=8871244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871245	.	C	.	.	LowGQX	END=8871349	GT	./.
chr2	8871350	.	C	.	.	LowGQX	END=8871351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871352	.	T	.	.	LowGQX	.	GT	./.
chr2	8871353	.	C	.	.	LowGQX	END=8871356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871357	.	C	.	.	LowGQX	.	GT	./.
chr2	8871358	.	A	.	.	LowGQX	END=8871366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871367	.	T	.	.	LowGQX	.	GT	./.
chr2	8871368	.	G	.	.	LowGQX	END=8871459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871460	.	G	.	.	LowGQX	.	GT	./.
chr2	8871461	.	C	.	.	LowGQX	END=8871500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8871501	.	A	.	.	LowGQX	END=8872011	GT	./.
chr2	8872012	.	T	.	.	LowGQX	END=8872114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8873572	.	A	.	.	LowGQX	END=8873790	GT	./.
chr2	8873791	.	G	.	.	LowGQX	END=8873796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8873797	.	C	.	.	LowGQX	.	GT	./.
chr2	8873798	.	T	.	.	LowGQX	END=8873812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8874783	.	A	.	.	LowGQX	END=8874885	GT	./.
chr2	8876996	.	A	.	.	LowGQX	END=8877131	GT	./.
chr2	8887254	.	A	.	.	LowGQX	END=8887353	GT	./.
chr2	8888015	.	A	.	.	LowGQX	END=8888132	GT	./.
chr2	8889495	.	A	.	.	LowGQX	END=8889499	GT	./.
chr2	8889500	.	C	.	.	LowGQX	END=8889508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8889509	.	A	.	.	LowGQX	.	GT	./.
chr2	8889510	.	A	.	.	LowGQX	END=8889513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8889514	.	T	.	.	LowGQX	END=8889515	GT	./.
chr2	8889516	.	C	.	.	LowGQX	END=8889523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8889524	.	T	.	.	LowGQX	.	GT	./.
chr2	8889525	.	G	.	.	LowGQX	END=8889535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8889536	.	T	.	.	LowGQX	.	GT	./.
chr2	8889537	.	T	.	.	LowGQX	END=8889539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8889540	.	T	.	.	LowGQX	.	GT	./.
chr2	8889541	.	G	.	.	LowGQX	END=8889546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8889547	.	T	.	.	LowGQX	.	GT	./.
chr2	8889548	.	T	.	.	LowGQX	END=8889569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8889570	.	T	.	.	LowGQX	END=8889572	GT	./.
chr2	8889573	.	G	.	.	LowGQX	END=8889577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8889578	.	C	.	.	LowGQX	.	GT	./.
chr2	8889579	.	A	.	.	LowGQX	END=8889586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8889587	.	G	.	.	LowGQX	.	GT	./.
chr2	8889588	.	A	.	.	LowGQX	END=8889590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8889591	.	A	.	.	LowGQX	.	GT	./.
chr2	8889592	.	T	.	.	LowGQX	END=8889594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8890240	.	A	.	.	LowGQX	END=8890467	GT	./.
chr2	8891574	.	T	.	.	LowGQX	END=8891776	GT	./.
chr2	8897827	.	T	.	.	LowGQX	END=8897926	GT	./.
chr2	8910798	.	A	.	.	LowGQX	END=8910964	GT	./.
chr2	8916876	.	A	.	.	LowGQX	END=8917001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8917002	.	C	.	.	LowGQX	END=8917024	GT	./.
chr2	8918764	.	C	.	.	LowGQX	END=8918863	GT	./.
chr2	8919024	.	A	.	.	LowGQX	END=8919271	GT	./.
chr2	8919802	.	A	.	.	LowGQX	END=8919946	GT	./.
chr2	8925869	.	A	.	.	LowGQX	END=8926162	GT	./.
chr2	8926334	.	A	.	.	LowGQX	END=8926489	GT	./.
chr2	8928775	.	A	.	.	LowGQX	END=8928944	GT	./.
chr2	8929988	.	A	.	.	LowGQX	END=8930114	GT	./.
chr2	8930115	.	G	.	.	LowGQX	END=8930140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8930141	.	A	.	.	LowGQX	.	GT	./.
chr2	8930142	.	A	.	.	LowGQX	END=8930154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8930155	.	C	.	.	LowGQX	.	GT	./.
chr2	8930156	.	T	.	.	LowGQX	END=8930157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8930158	.	A	.	.	LowGQX	.	GT	./.
chr2	8930159	.	A	.	.	LowGQX	END=8930191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8931188	.	A	.	.	LowGQX	END=8931356	GT	./.
chr2	8933938	.	A	.	.	LowGQX	END=8933996	GT	./.
chr2	8933997	.	G	.	.	LowGQX	END=8934119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8936899	.	A	.	.	LowGQX	END=8937001	GT	./.
chr2	8938330	.	A	.	.	LowGQX	END=8938407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8938408	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	8938409	.	A	.	.	LowGQX	END=8938432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	8940528	.	A	.	.	LowGQX	END=8940630	GT	./.
chr2	8943058	.	A	.	.	LowGQX	.	GT	./.
chr2	8943059	.	C	.	.	LowGQX	END=8943061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943062	.	T	.	.	LowGQX	.	GT	./.
chr2	8943063	.	G	.	.	LowGQX	END=8943064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943065	.	C	.	.	LowGQX	.	GT	./.
chr2	8943066	.	A	.	.	LowGQX	END=8943068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943069	.	T	.	.	LowGQX	.	GT	./.
chr2	8943070	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943071	.	T	.	.	LowGQX	.	GT	./.
chr2	8943072	.	G	.	.	LowGQX	END=8943075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943076	.	A	.	.	LowGQX	END=8943077	GT	./.
chr2	8943078	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943079	.	T	.	.	LowGQX	END=8943080	GT	./.
chr2	8943081	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943082	.	G	.	.	LowGQX	END=8943084	GT	./.
chr2	8943085	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943086	.	C	.	.	LowGQX	.	GT	./.
chr2	8943087	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943088	.	G	.	.	LowGQX	.	GT	./.
chr2	8943089	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943090	.	G	.	.	LowGQX	.	GT	./.
chr2	8943091	.	T	.	.	LowGQX	END=8943093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943094	.	A	.	.	LowGQX	END=8943096	GT	./.
chr2	8943097	.	A	.	.	LowGQX	END=8943098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943099	.	A	.	.	LowGQX	.	GT	./.
chr2	8943100	.	T	.	.	LowGQX	END=8943103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943104	.	G	.	.	LowGQX	END=8943109	GT	./.
chr2	8943110	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943111	.	C	.	.	LowGQX	.	GT	./.
chr2	8943112	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943113	.	C	.	.	LowGQX	.	GT	./.
chr2	8943114	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943115	.	G	.	.	LowGQX	.	GT	./.
chr2	8943116	.	T	.	.	LowGQX	END=8943118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943119	.	G	.	.	LowGQX	END=8943120	GT	./.
chr2	8943121	.	C	.	.	LowGQX	END=8943123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943124	.	T	.	.	LowGQX	.	GT	./.
chr2	8943125	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943126	.	C	.	.	LowGQX	.	GT	./.
chr2	8943127	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943128	.	T	.	.	LowGQX	END=8943131	GT	./.
chr2	8943132	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943133	.	G	.	.	LowGQX	END=8943134	GT	./.
chr2	8943135	.	A	.	.	LowGQX	END=8943137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943138	.	C	.	.	LowGQX	.	GT	./.
chr2	8943139	.	A	.	.	LowGQX	END=8943140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943141	.	C	.	.	LowGQX	END=8943143	GT	./.
chr2	8943144	.	A	.	.	LowGQX	END=8943153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943154	.	C	.	.	LowGQX	.	GT	./.
chr2	8943155	.	C	.	.	LowGQX	END=8943156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943157	.	T	.	.	LowGQX	.	GT	./.
chr2	8943158	.	C	.	.	LowGQX	END=8943166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943167	.	T	.	.	LowGQX	.	GT	./.
chr2	8943168	.	T	.	.	LowGQX	END=8943172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943173	.	T	.	.	LowGQX	END=8943174	GT	./.
chr2	8943175	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943176	.	C	.	.	LowGQX	.	GT	./.
chr2	8943177	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943178	.	T	.	.	LowGQX	.	GT	./.
chr2	8943179	.	T	.	.	LowGQX	END=8943180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943181	.	G	.	.	LowGQX	.	GT	./.
chr2	8943182	.	G	.	.	LowGQX	END=8943183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943184	.	T	.	.	LowGQX	.	GT	./.
chr2	8943185	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943186	.	C	.	.	LowGQX	END=8943189	GT	./.
chr2	8943190	.	T	.	.	LowGQX	END=8943194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943195	.	A	.	.	LowGQX	.	GT	./.
chr2	8943196	.	A	.	.	LowGQX	END=8943199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943200	.	C	.	.	LowGQX	END=8943203	GT	./.
chr2	8943204	.	T	.	.	LowGQX	END=8943211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943212	.	G	.	.	LowGQX	.	GT	./.
chr2	8943213	.	T	.	.	LowGQX	END=8943214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943215	.	T	.	.	LowGQX	.	GT	./.
chr2	8943216	.	G	.	.	LowGQX	END=8943231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943232	.	G	.	.	LowGQX	END=8943233	GT	./.
chr2	8943234	.	C	.	.	LowGQX	END=8943243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943244	.	G	.	.	LowGQX	.	GT	./.
chr2	8943245	.	C	.	.	LowGQX	END=8943249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943250	.	A	.	.	LowGQX	.	GT	./.
chr2	8943251	.	T	.	.	LowGQX	END=8943257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8943258	.	C	.	.	LowGQX	END=8943259	GT	./.
chr2	8946399	.	A	.	.	LowGQX	END=8946460	GT	./.
chr2	8946461	.	A	.	.	LowGQX	END=8946473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8946474	.	G	.	.	LowGQX	.	GT	./.
chr2	8946475	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8946476	.	C	.	.	LowGQX	.	GT	./.
chr2	8946477	.	C	.	.	LowGQX	END=8946489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8946490	.	T	.	.	LowGQX	.	GT	./.
chr2	8946491	.	G	.	.	LowGQX	END=8946497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8946498	.	T	.	.	LowGQX	.	GT	./.
chr2	8946499	.	A	.	.	LowGQX	END=8946501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8952523	.	A	.	.	LowGQX	END=8952626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	8953365	.	A	.	.	LowGQX	END=8953467	GT	./.
chr2	8957746	.	A	.	.	LowGQX	END=8957848	GT	./.
chr2	8958823	.	A	.	.	LowGQX	END=8958925	GT	./.
chr2	8967114	.	A	.	.	LowGQX	END=8967225	GT	./.
chr2	8998807	.	G	.	.	LowGQX	END=8999036	GT	./.
chr2	9000701	.	T	.	.	LowGQX	END=9000783	GT	./.
chr2	9000784	.	T	.	.	LowGQX	END=9000786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9000787	.	C	.	.	LowGQX	END=9000788	GT	./.
chr2	9000789	.	C	.	.	LowGQX	END=9000799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9000800	.	C	.	.	LowGQX	.	GT	./.
chr2	9000801	.	T	.	.	LowGQX	END=9000804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9000805	.	T	.	.	LowGQX	.	GT	./.
chr2	9000806	.	G	.	.	LowGQX	END=9000820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9000821	.	A	.	.	LowGQX	.	GT	./.
chr2	9000822	.	T	.	.	LowGQX	END=9000823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9000824	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	9000825	.	A	.	.	LowGQX	END=9000826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9000827	.	G	.	.	LowGQX	.	GT	./.
chr2	9000828	.	T	.	.	LowGQX	END=9000830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9000831	.	T	.	.	LowGQX	.	GT	./.
chr2	9000832	.	A	.	.	LowGQX	END=9000833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9000834	.	C	.	.	LowGQX	.	GT	./.
chr2	9000835	.	A	.	.	LowGQX	END=9000839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9000840	.	A	.	.	LowGQX	.	GT	./.
chr2	9000841	.	A	.	.	LowGQX	END=9000859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9000860	.	G	.	.	LowGQX	END=9000861	GT	./.
chr2	9000862	.	T	.	.	LowGQX	END=9000869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9000870	.	A	.	.	LowGQX	.	GT	./.
chr2	9000871	.	A	.	.	LowGQX	END=9000876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9000877	.	T	.	.	LowGQX	.	GT	./.
chr2	9000878	.	C	.	.	LowGQX	END=9000882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9000883	.	G	.	.	LowGQX	.	GT	./.
chr2	9000884	.	T	.	.	LowGQX	END=9000885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9000886	.	A	.	.	LowGQX	.	GT	./.
chr2	9000887	.	T	.	.	LowGQX	END=9000896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9002393	.	A	.	.	LowGQX	END=9002492	GT	./.
chr2	9002718	.	A	.	.	LowGQX	END=9002854	GT	./.
chr2	9004283	.	T	.	.	LowGQX	END=9004382	GT	./.
chr2	9008574	.	A	.	.	LowGQX	.	GT	./.
chr2	9008575	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9008576	.	C	.	.	LowGQX	END=9008578	GT	./.
chr2	9008579	.	T	.	.	LowGQX	END=9008582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9008583	.	T	.	.	LowGQX	END=9008586	GT	./.
chr2	9008587	.	G	.	.	LowGQX	END=9008588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9008589	.	A	.	.	LowGQX	.	GT	./.
chr2	9008590	.	T	.	.	LowGQX	END=9008591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9008592	.	C	.	.	LowGQX	.	GT	./.
chr2	9008593	.	T	.	.	LowGQX	END=9008595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9008596	.	A	.	.	LowGQX	.	GT	./.
chr2	9008597	.	A	.	.	LowGQX	END=9008600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9008601	.	G	.	.	LowGQX	.	GT	./.
chr2	9008602	.	A	.	.	LowGQX	END=9008603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9008604	.	A	.	.	LowGQX	.	GT	./.
chr2	9008605	.	T	.	.	LowGQX	END=9008607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9008608	.	A	.	.	LowGQX	.	GT	./.
chr2	9008609	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9008610	.	T	.	.	LowGQX	.	GT	./.
chr2	9008611	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9008612	.	C	.	.	LowGQX	END=9008681	GT	./.
chr2	9013236	.	A	.	.	LowGQX	END=9013432	GT	./.
chr2	9017158	.	A	.	.	LowGQX	END=9017345	GT	./.
chr2	9022619	.	A	.	.	LowGQX	END=9022718	GT	./.
chr2	9028066	.	A	.	.	LowGQX	END=9028225	GT	./.
chr2	9048749	.	A	.	.	LowGQX	END=9048848	GT	./.
chr2	9083305	.	T	.	.	LowGQX	END=9083404	GT	./.
chr2	9098624	.	A	.	.	LowGQX	END=9098758	GT	./.
chr2	9098759	.	C	.	.	LowGQX	END=9098773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9114477	.	A	.	.	LowGQX	END=9114576	GT	./.
chr2	9143596	.	C	.	.	LowGQX	END=9143756	GT	./.
chr2	9347232	.	C	.	.	LowGQX	END=9347401	GT	./.
chr2	9419433	.	C	.	.	LowGQX	END=9419507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	9419508	.	C	A	14.92	LowGQ;LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=4.97;ReadPosRankSum=0.736;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,2:3:3.01:45,3,0:60:3:0.667
chr2	9419509	.	T	.	.	LowGQX	END=9419529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9419530	.	T	.	.	LowGQX	.	GT	./.
chr2	9419531	.	C	.	.	LowGQX	END=9419532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9437427	.	A	.	.	LowGQX	END=9437576	GT	./.
chr2	9458581	.	A	.	.	LowGQX	END=9458668	GT	./.
chr2	9458669	.	A	.	.	LowGQX	END=9458740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	9460325	.	G	.	.	LowGQX	END=9460378	GT	./.
chr2	9460379	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9460380	.	G	.	.	LowGQX	.	GT	./.
chr2	9460381	.	A	.	.	LowGQX	END=9460418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9460419	.	T	.	.	LowGQX	.	GT	./.
chr2	9460420	.	C	.	.	LowGQX	END=9460437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9460438	.	A	.	.	LowGQX	.	GT	./.
chr2	9460439	.	A	.	.	LowGQX	END=9460441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9460442	.	C	.	.	LowGQX	.	GT	./.
chr2	9460443	.	T	.	.	LowGQX	END=9460448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9460449	.	G	.	.	LowGQX	.	GT	./.
chr2	9460450	.	G	.	.	LowGQX	END=9460473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9460474	.	T	.	.	LowGQX	.	GT	./.
chr2	9460475	.	T	.	.	LowGQX	END=9460491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9463248	.	A	.	.	LowGQX	END=9463381	GT	./.
chr2	9467893	.	A	.	.	LowGQX	END=9468047	GT	./.
chr2	9474855	.	T	.	.	LowGQX	END=9474954	GT	./.
chr2	9475216	.	T	.	.	LowGQX	END=9475315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9484659	.	A	.	.	LowGQX	END=9484766	GT	./.
chr2	9484845	.	C	.	.	LowGQX	END=9484944	GT	./.
chr2	9490931	.	A	.	.	LowGQX	END=9491030	GT	./.
chr2	9496151	.	A	.	.	LowGQX	END=9496250	GT	./.
chr2	9496306	.	A	.	.	LowGQX	END=9496476	GT	./.
chr2	9498883	.	A	.	.	LowGQX	END=9499020	GT	./.
chr2	9508552	.	A	.	.	LowGQX	END=9508612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9508613	.	T	.	.	LowGQX	END=9508651	GT	./.
chr2	9514882	.	A	.	.	LowGQX	END=9515075	GT	./.
chr2	9517030	.	T	.	.	LowGQX	END=9517129	GT	./.
chr2	9519071	.	A	.	.	LowGQX	END=9519073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9519074	.	G	.	.	LowGQX	END=9519075	GT	./.
chr2	9519076	.	G	.	.	LowGQX	END=9519081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9519082	.	G	.	.	LowGQX	END=9519083	GT	./.
chr2	9519084	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9519085	.	T	.	.	LowGQX	.	GT	./.
chr2	9519086	.	A	.	.	LowGQX	END=9519093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9519094	.	A	.	.	LowGQX	END=9519095	GT	./.
chr2	9519096	.	G	.	.	LowGQX	END=9519099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9519100	.	A	.	.	LowGQX	.	GT	./.
chr2	9519101	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9519102	.	G	.	.	LowGQX	.	GT	./.
chr2	9519103	.	C	.	.	LowGQX	END=9519164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9519165	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	9519166	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	9519167	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	9519168	.	G	.	.	LowGQX	END=9519179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	9519180	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	9519181	.	C	.	.	LowGQX	END=9519190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9520794	.	T	.	.	LowGQX	END=9520796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9520797	.	A	.	.	LowGQX	.	GT	./.
chr2	9520798	.	A	.	.	LowGQX	END=9520805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9520806	.	C	.	.	LowGQX	.	GT	./.
chr2	9520807	.	C	.	.	LowGQX	END=9520842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9520843	.	C	.	.	LowGQX	.	GT	./.
chr2	9520844	.	C	.	.	LowGQX	END=9520869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9520870	.	C	.	.	LowGQX	.	GT	./.
chr2	9520871	.	A	.	.	LowGQX	END=9520890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9520891	.	C	.	.	LowGQX	.	GT	./.
chr2	9520892	.	G	.	.	LowGQX	END=9520903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9520904	.	C	.	.	LowGQX	END=9520953	GT	./.
chr2	9525372	.	A	.	.	LowGQX	END=9525489	GT	./.
chr2	9528411	.	G	.	.	LowGQX	END=9528680	GT	./.
chr2	9531158	.	T	.	.	LowGQX	END=9531327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9533609	.	A	.	.	LowGQX	END=9533798	GT	./.
chr2	9540127	.	A	.	.	LowGQX	END=9540222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9540223	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	9540224	.	A	.	.	LowGQX	END=9540226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	9540866	.	T	.	.	LowGQX	END=9540965	GT	./.
chr2	9541401	.	A	.	.	LowGQX	END=9541527	GT	./.
chr2	9543370	.	T	.	.	LowGQX	END=9543469	GT	./.
chr2	9546949	.	C	.	.	LowGQX	END=9547048	GT	./.
chr2	9547553	.	G	.	.	LowGQX	END=9547729	GT	./.
chr2	9548239	.	T	.	.	LowGQX	END=9548242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9548243	.	T	.	.	LowGQX	.	GT	./.
chr2	9548244	.	A	.	.	LowGQX	END=9548255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9548256	.	T	.	.	LowGQX	.	GT	./.
chr2	9548257	.	T	.	.	LowGQX	END=9548262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9548263	.	T	.	.	LowGQX	.	GT	./.
chr2	9548264	.	T	.	.	LowGQX	END=9548265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9548266	.	T	.	.	LowGQX	.	GT	./.
chr2	9548267	.	A	.	.	LowGQX	END=9548270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9548271	.	C	.	.	LowGQX	END=9548338	GT	./.
chr2	9552335	.	A	.	.	LowGQX	END=9552536	GT	./.
chr2	9554297	.	T	.	.	LowGQX	END=9554396	GT	./.
chr2	9558741	.	T	.	.	LowGQX	END=9558840	GT	./.
chr2	9563402	.	C	.	.	LowGQX	END=9563561	GT	./.
chr2	9563878	.	C	.	.	LowGQX	END=9563879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9563880	.	C	.	.	LowGQX	END=9563977	GT	./.
chr2	9568876	.	C	.	.	LowGQX	END=9568975	GT	./.
chr2	9569990	.	T	.	.	LowGQX	END=9570008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9570009	.	A	.	.	LowGQX	.	GT	./.
chr2	9570010	.	A	.	.	LowGQX	END=9570143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9570144	.	T	.	.	LowGQX	END=9570151	GT	./.
chr2	9570879	.	A	.	.	LowGQX	END=9571011	GT	./.
chr2	9572638	.	A	.	.	LowGQX	END=9572819	GT	./.
chr2	9573995	.	C	.	.	LowGQX	END=9574094	GT	./.
chr2	9576338	.	A	.	.	LowGQX	END=9576492	GT	./.
chr2	9580618	.	A	.	.	LowGQX	END=9580797	GT	./.
chr2	9581945	.	A	.	.	LowGQX	END=9582107	GT	./.
chr2	9583642	.	A	.	.	LowGQX	END=9583792	GT	./.
chr2	9588325	.	A	.	.	LowGQX	END=9588481	GT	./.
chr2	9593040	.	A	.	.	LowGQX	END=9593152	GT	./.
chr2	9595786	.	A	.	.	LowGQX	END=9595888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9597060	.	A	.	.	LowGQX	END=9597159	GT	./.
chr2	9599597	.	T	.	.	LowGQX	END=9599753	GT	./.
chr2	9607821	.	T	.	.	LowGQX	END=9607920	GT	./.
chr2	9611470	.	A	.	.	LowGQX	END=9611570	GT	./.
chr2	9612986	.	T	.	.	LowGQX	END=9613066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9613067	.	G	.	.	LowGQX	END=9613071	GT	./.
chr2	9613072	.	G	.	.	LowGQX	END=9613148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	9614627	.	C	.	.	LowGQX	END=9614651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9614652	.	C	.	.	LowGQX	.	GT	./.
chr2	9614653	.	C	.	.	LowGQX	END=9614658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9614659	.	T	.	.	LowGQX	.	GT	./.
chr2	9614660	.	G	.	.	LowGQX	END=9614668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9614669	.	C	.	.	LowGQX	.	GT	./.
chr2	9614670	.	C	.	.	LowGQX	END=9614697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9614698	.	G	.	.	LowGQX	.	GT	./.
chr2	9614699	.	G	.	.	LowGQX	END=9614707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9614708	.	G	.	.	LowGQX	.	GT	./.
chr2	9614709	.	A	.	.	LowGQX	END=9614710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9614711	.	G	.	.	LowGQX	END=9614843	GT	./.
chr2	9615294	.	G	.	.	LowGQX	END=9615393	GT	./.
chr2	9616093	.	A	.	.	LowGQX	END=9616192	GT	./.
chr2	9618349	.	A	.	.	LowGQX	END=9618351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	9618352	.	A	.	.	LowGQX	.	GT	./.
chr2	9618353	.	A	.	.	LowGQX	END=9618357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	9618358	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	9618359	.	A	.	.	LowGQX	END=9618421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9618422	.	T	.	.	LowGQX	END=9618501	GT	./.
chr2	9621413	.	A	.	.	LowGQX	END=9621473	GT	./.
chr2	9621474	.	G	.	.	LowGQX	END=9621495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9621496	.	A	.	.	LowGQX	.	GT	./.
chr2	9621497	.	C	.	.	LowGQX	END=9621578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9624559	.	A	.	.	LowGQX	END=9624681	GT	./.
chr2	9628274	.	A	.	.	LowGQX	END=9628460	GT	./.
chr2	9630304	.	A	.	.	PASS	END=9630335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr2	9630336	.	A	.	.	PASS	END=9630470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	9630471	.	T	.	.	PASS	END=9630499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	9630500	.	T	.	.	PASS	END=9630636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	9630637	.	A	.	.	PASS	END=9630649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	9631206	.	G	.	.	PASS	END=9631219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	9631220	.	G	.	.	PASS	END=9631305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	9633022	.	C	.	.	PASS	END=9633075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	9633076	.	A	.	.	PASS	END=9633121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	9633866	.	A	.	.	PASS	END=9633949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	9633950	.	T	.	.	PASS	END=9633965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	9634764	.	A	.	.	PASS	END=9634851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:82:60
chr2	9634852	.	G	.	.	PASS	END=9634855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	9634856	.	A	G	514.53	PASS	BaseQRankSum=-0.798;DP=49;Dels=0.00;FS=1.141;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.414;QD=10.50;ReadPosRankSum=-1.364;SB=-249.24	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,21:49:99:545,0,758:60:99:0.429
chr2	9634857	.	G	.	.	PASS	END=9634898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr2	9637241	.	A	.	.	PASS	END=9637277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	9637278	.	T	.	.	PASS	END=9637301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	9637302	.	T	.	.	PASS	END=9637379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	9642300	.	A	.	.	PASS	END=9642311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	9642312	.	G	.	.	PASS	END=9642344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	9642345	.	C	.	.	PASS	END=9642407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	9645293	.	A	.	.	PASS	END=9645309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	9645310	.	T	.	.	PASS	END=9645457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	9645458	.	T	.	.	PASS	END=9645496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	9650106	.	A	.	.	PASS	END=9650120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	9650121	.	T	.	.	PASS	END=9650185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	9650186	.	T	.	.	PASS	END=9650217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr2	9650218	.	C	.	.	PASS	END=9650262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr2	9658025	.	C	.	.	PASS	END=9658042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	9658043	.	G	.	.	PASS	END=9658061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	9658062	.	T	.	.	PASS	END=9658124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	9658230	.	A	.	.	PASS	END=9658326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	9658327	.	T	.	.	PASS	END=9658358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:84:60
chr2	9658359	.	T	.	.	PASS	END=9658362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr2	9658363	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:51:60
chr2	9658364	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:75:60
chr2	9658365	.	A	.	.	PASS	END=9658367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	9658368	.	G	.	.	PASS	END=9658371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:72:60
chr2	9658372	.	A	.	.	PASS	END=9658374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr2	9658375	.	T	.	.	PASS	END=9658376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:45:60
chr2	9658377	.	C	.	.	PASS	END=9658378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:63:60
chr2	9661330	.	A	.	.	PASS	END=9661437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	9661438	.	A	.	.	PASS	END=9661447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	9662510	.	A	.	.	LowGQX	END=9662531	GT	./.
chr2	9662532	.	T	.	.	LowGQX	END=9662564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9662565	.	T	.	.	LowGQX	.	GT	./.
chr2	9662566	.	A	.	.	LowGQX	END=9662591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9662592	.	G	.	.	LowGQX	.	GT	./.
chr2	9662593	.	A	.	.	LowGQX	END=9662609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9663376	.	A	.	.	PASS	END=9663386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	9663387	.	C	.	.	PASS	END=9663418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	9663419	.	C	.	.	PASS	END=9663456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	9663457	.	A	.	.	PASS	END=9663477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	9666238	.	A	.	.	PASS	END=9666255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	9666256	.	G	.	.	PASS	END=9666270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr2	9666271	.	C	.	.	PASS	END=9666293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	9666294	.	A	.	.	PASS	END=9666373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:92:60
chr2	9666374	.	C	.	.	PASS	END=9666393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr2	9667904	.	T	.	.	PASS	END=9667923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	9667924	.	G	.	.	PASS	END=9667948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	9667949	.	G	.	.	PASS	END=9668071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	9668072	.	T	.	.	PASS	END=9668083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	9668084	.	C	.	.	PASS	END=9668085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	9675958	.	T	.	.	PASS	END=9675966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	9675967	.	A	.	.	PASS	END=9675987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr2	9675988	.	G	.	.	PASS	END=9676047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr2	9676048	.	T	.	.	PASS	END=9676057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr2	9676825	.	A	.	.	PASS	END=9676959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:295:99:60
chr2	9683280	.	A	.	.	PASS	END=9683309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr2	9683310	.	T	.	.	PASS	END=9683328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	9683329	.	C	.	.	PASS	END=9683391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	9683392	.	T	.	.	PASS	END=9683416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr2	9695636	.	A	.	.	PASS	END=9695715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	9695716	.	A	.	.	PASS	END=9695722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	9695723	.	A	.	.	PASS	END=9695736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	9725395	.	G	.	.	LowGQX	END=9725494	GT	./.
chr2	9727481	.	A	.	.	LowGQX	END=9727640	GT	./.
chr2	9728292	.	A	.	.	LowGQX	END=9728481	GT	./.
chr2	9731519	.	A	.	.	LowGQX	END=9731646	GT	./.
chr2	9770286	.	A	.	.	LowGQX	END=9770583	GT	./.
chr2	9983570	.	G	.	.	LowGQX	END=9983729	GT	./.
chr2	9985347	.	A	.	.	LowGQX	END=9985449	GT	./.
chr2	9986163	.	G	.	.	LowGQX	END=9986230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9986231	.	C	.	.	LowGQX	.	GT	./.
chr2	9986232	.	C	.	.	LowGQX	END=9986236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9986237	.	C	.	.	LowGQX	.	GT	./.
chr2	9986238	.	A	.	.	LowGQX	END=9986251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	9986252	.	C	.	.	LowGQX	END=9986262	GT	./.
chr2	9989440	.	G	.	.	LowGQX	END=9989595	GT	./.
chr2	9991668	.	A	.	.	LowGQX	END=9991769	GT	./.
chr2	9992062	.	C	.	.	LowGQX	END=9992161	GT	./.
chr2	9994453	.	A	.	.	LowGQX	END=9994552	GT	./.
chr2	10008373	.	C	.	.	LowGQX	END=10008560	GT	./.
chr2	10008746	.	A	.	.	LowGQX	END=10008845	GT	./.
chr2	10015992	.	A	.	.	LowGQX	END=10016149	GT	./.
chr2	10022833	.	A	.	.	LowGQX	END=10022936	GT	./.
chr2	10044956	.	T	.	.	LowGQX	END=10045137	GT	./.
chr2	10050863	.	A	.	.	LowGQX	END=10051062	GT	./.
chr2	10051558	.	C	.	.	LowGQX	END=10051713	GT	./.
chr2	10053286	.	A	.	.	LowGQX	END=10053442	GT	./.
chr2	10059156	.	T	.	.	LowGQX	END=10059255	GT	./.
chr2	10059725	.	A	.	.	LowGQX	END=10059874	GT	./.
chr2	10059875	.	C	.	.	LowGQX	END=10059905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10059906	.	A	.	.	LowGQX	.	GT	./.
chr2	10059907	.	A	.	.	LowGQX	END=10059910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10059911	.	T	.	.	LowGQX	.	GT	./.
chr2	10059912	.	T	.	.	LowGQX	END=10059923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10059924	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	10059925	.	T	.	.	LowGQX	END=10059926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10059927	.	A	.	.	LowGQX	END=10059928	GT	./.
chr2	10059929	.	T	.	.	LowGQX	END=10059944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10059945	.	A	.	.	LowGQX	.	GT	./.
chr2	10059946	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10059947	.	A	.	.	LowGQX	.	GT	./.
chr2	10059948	.	T	.	.	LowGQX	END=10059953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10073910	.	A	.	.	LowGQX	END=10073997	GT	./.
chr2	10073998	.	G	.	.	LowGQX	END=10074115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10085297	.	G	.	.	LowGQX	END=10085339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10085340	.	T	.	.	LowGQX	END=10085396	GT	./.
chr2	10091863	.	C	.	.	LowGQX	END=10092022	GT	./.
chr2	10093126	.	A	.	.	LowGQX	END=10093225	GT	./.
chr2	10094954	.	T	.	.	LowGQX	END=10095230	GT	./.
chr2	10098901	.	T	.	.	LowGQX	END=10099000	GT	./.
chr2	10101174	.	G	.	.	LowGQX	END=10101184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10101185	.	C	.	.	LowGQX	.	GT	./.
chr2	10101186	.	C	.	.	LowGQX	END=10101192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10101193	.	G	.	.	LowGQX	.	GT	./.
chr2	10101194	.	A	.	.	LowGQX	END=10101198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10101199	.	G	.	.	LowGQX	.	GT	./.
chr2	10101200	.	C	.	.	LowGQX	END=10101206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10101207	.	T	.	.	LowGQX	.	GT	./.
chr2	10101208	.	C	.	.	LowGQX	END=10101291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10101292	.	T	.	.	LowGQX	.	GT	./.
chr2	10101293	.	G	.	.	LowGQX	END=10101322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10101323	.	A	.	.	LowGQX	END=10101567	GT	./.
chr2	10102572	.	T	.	.	LowGQX	END=10102671	GT	./.
chr2	10104013	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:23
chr2	10104014	.	G	.	.	LowGQX	END=10104015	GT	./.
chr2	10104016	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:23
chr2	10104017	.	A	.	.	LowGQX	END=10104018	GT	./.
chr2	10104019	.	A	.	.	LowGQX	END=10104021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:23
chr2	10104022	.	T	.	.	LowGQX	END=10104089	GT	./.
chr2	10104090	.	G	.	.	LowGQX	END=10104094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10104095	.	A	.	.	LowGQX	END=10104097	GT	./.
chr2	10104098	.	G	.	.	LowGQX	END=10104101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10104102	.	G	.	.	LowGQX	.	GT	./.
chr2	10104103	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10104104	.	T	.	.	LowGQX	END=10104106	GT	./.
chr2	10104107	.	A	.	.	LowGQX	END=10104114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10104115	.	A	.	.	LowGQX	.	GT	./.
chr2	10104116	.	C	.	.	LowGQX	END=10104118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10104119	.	T	.	.	LowGQX	.	GT	./.
chr2	10104120	.	G	.	.	LowGQX	END=10104122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10104123	.	G	.	.	LowGQX	.	GT	./.
chr2	10104124	.	G	.	.	LowGQX	END=10104125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10104126	.	G	.	.	LowGQX	.	GT	./.
chr2	10104127	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10104128	.	T	.	.	LowGQX	.	GT	./.
chr2	10104129	.	G	.	.	LowGQX	END=10104136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10104137	.	G	.	.	LowGQX	END=10104138	GT	./.
chr2	10104139	.	G	.	.	LowGQX	END=10104141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10104142	.	G	.	.	LowGQX	.	GT	./.
chr2	10104143	.	G	.	.	LowGQX	END=10104166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10104167	.	T	.	.	LowGQX	.	GT	./.
chr2	10104168	.	T	.	.	LowGQX	END=10104172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10104173	.	T	.	.	LowGQX	.	GT	./.
chr2	10104362	.	A	.	.	LowGQX	END=10104477	GT	./.
chr2	10105414	.	A	.	.	LowGQX	END=10105513	GT	./.
chr2	10126250	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10126251	.	G	.	.	LowGQX	.	GT	./.
chr2	10126252	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10126253	.	T	.	.	LowGQX	.	GT	./.
chr2	10126254	.	T	.	.	LowGQX	END=10126288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10126289	.	C	.	.	LowGQX	.	GT	./.
chr2	10126290	.	T	.	.	LowGQX	END=10126292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10126293	.	C	.	.	LowGQX	.	GT	./.
chr2	10126294	.	C	.	.	LowGQX	END=10126306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10126307	.	A	.	.	LowGQX	END=10126412	GT	./.
chr2	10130812	.	C	.	.	LowGQX	END=10130911	GT	./.
chr2	10132133	.	A	.	.	LowGQX	END=10132276	GT	./.
chr2	10133304	.	T	.	.	LowGQX	END=10133365	GT	./.
chr2	10133366	.	G	.	.	LowGQX	END=10133403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10136003	.	G	.	.	LowGQX	END=10136054	GT	./.
chr2	10136055	.	C	.	.	LowGQX	END=10136058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10136059	.	C	.	.	LowGQX	.	GT	./.
chr2	10136060	.	C	.	.	LowGQX	END=10136070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10136071	.	C	.	.	LowGQX	END=10136072	GT	./.
chr2	10136073	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10136074	.	G	.	.	LowGQX	.	GT	./.
chr2	10136075	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10136076	.	C	.	.	LowGQX	END=10136077	GT	./.
chr2	10136078	.	G	.	.	LowGQX	END=10136083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10136084	.	A	.	.	LowGQX	.	GT	./.
chr2	10136085	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10136086	.	G	.	.	LowGQX	.	GT	./.
chr2	10136087	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10136088	.	A	.	.	LowGQX	END=10136089	GT	./.
chr2	10136090	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10136091	.	A	.	.	LowGQX	.	GT	./.
chr2	10136092	.	A	.	.	LowGQX	END=10136093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10136094	.	G	.	.	LowGQX	.	GT	./.
chr2	10136095	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10136096	.	G	.	.	LowGQX	.	GT	./.
chr2	10136097	.	A	.	.	LowGQX	END=10136098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10136099	.	G	.	.	LowGQX	END=10136101	GT	./.
chr2	10136102	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	10136437	.	T	.	.	LowGQX	END=10136463	GT	./.
chr2	10136464	.	G	.	.	LowGQX	END=10136536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139076	.	T	.	.	LowGQX	END=10139078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139079	.	C	.	.	LowGQX	.	GT	./.
chr2	10139080	.	T	.	.	LowGQX	END=10139082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139083	.	C	.	.	LowGQX	.	GT	./.
chr2	10139084	.	C	.	.	LowGQX	END=10139086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139087	.	T	.	.	LowGQX	END=10139088	GT	./.
chr2	10139089	.	T	.	.	LowGQX	END=10139091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139092	.	G	.	.	LowGQX	.	GT	./.
chr2	10139093	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139094	.	T	.	.	LowGQX	END=10139095	GT	./.
chr2	10139096	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139097	.	C	.	.	LowGQX	.	GT	./.
chr2	10139098	.	A	.	.	LowGQX	END=10139099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139100	.	A	.	.	LowGQX	.	GT	./.
chr2	10139101	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139102	.	A	.	.	LowGQX	.	GT	./.
chr2	10139103	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139104	.	A	.	.	LowGQX	END=10139106	GT	./.
chr2	10139107	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139108	.	G	.	.	LowGQX	.	GT	./.
chr2	10139109	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139110	.	T	.	.	LowGQX	END=10139111	GT	./.
chr2	10139112	.	T	.	.	LowGQX	END=10139113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139114	.	C	.	.	LowGQX	.	GT	./.
chr2	10139115	.	C	.	.	LowGQX	END=10139116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	10139117	.	C	.	.	LowGQX	.	GT	./.
chr2	10139118	.	A	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	10139119	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	10139120	.	G	.	.	LowGQX	.	GT	./.
chr2	10139121	.	A	.	.	LowGQX	END=10139128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	10139129	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	10139130	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	10139131	.	G	.	.	LowGQX	.	GT	./.
chr2	10139132	.	A	.	.	LowGQX	END=10139134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139135	.	A	.	.	LowGQX	.	GT	./.
chr2	10139136	.	T	.	.	LowGQX	END=10139137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139138	.	T	.	.	LowGQX	.	GT	./.
chr2	10139139	.	T	.	.	LowGQX	END=10139142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139143	.	G	.	.	LowGQX	.	GT	./.
chr2	10139144	.	A	.	.	LowGQX	END=10139145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139146	.	G	.	.	LowGQX	.	GT	./.
chr2	10139147	.	T	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr2	10139148	.	G	.	.	LowGQX	END=10139151	GT	./.
chr2	10139152	.	A	.	.	LowGQX	END=10139153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139154	.	A	.	.	LowGQX	.	GT	./.
chr2	10139155	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139156	.	G	.	.	LowGQX	.	GT	./.
chr2	10139157	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139158	.	G	.	.	LowGQX	END=10139159	GT	./.
chr2	10139160	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139161	.	A	.	.	LowGQX	.	GT	./.
chr2	10139162	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139163	.	C	.	.	LowGQX	END=10139165	GT	./.
chr2	10139166	.	C	.	.	LowGQX	END=10139172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10139173	.	G	.	.	LowGQX	.	GT	./.
chr2	10139174	.	T	.	.	LowGQX	END=10139175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10140719	.	A	.	.	LowGQX	END=10140744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10140745	.	C	.	.	LowGQX	.	GT	./.
chr2	10140746	.	A	.	.	LowGQX	END=10140835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10140836	.	A	.	.	LowGQX	.	GT	./.
chr2	10140837	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10183733	.	G	.	.	LowGQX	END=10183736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	10183737	.	G	.	.	LowGQX	.	GT	./.
chr2	10183738	.	A	.	.	LowGQX	END=10183739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	10183740	.	C	.	.	LowGQX	.	GT	./.
chr2	10183741	.	T	.	.	LowGQX	END=10183782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	10183783	.	C	.	.	LowGQX	END=10183803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	10183804	.	C	.	.	LowGQX	END=10183833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	10183834	.	G	.	.	LowGQX	END=10183845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:60
chr2	10183846	.	G	.	.	PASS	END=10183874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	10183875	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:60
chr2	10183876	.	C	.	.	PASS	END=10183891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	10183892	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:27:60
chr2	10183893	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:30:60
chr2	10183894	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:27:60
chr2	10183895	.	G	.	.	PASS	END=10183897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:30:60
chr2	10183898	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:27:60
chr2	10183899	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:30:60
chr2	10183900	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:27:60
chr2	10183901	.	G	.	.	PASS	END=10183921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:30:60
chr2	10183922	.	T	.	.	LowGQX	END=10183923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:24:60
chr2	10183924	.	A	.	.	LowGQX	END=10183936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:18:60
chr2	10186226	.	G	.	.	PASS	END=10186237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr2	10186238	.	C	.	.	PASS	END=10186262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:86:60
chr2	10186263	.	T	.	.	PASS	END=10186289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	10186290	.	A	.	.	PASS	END=10186334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	10186335	.	G	.	.	PASS	END=10186440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	10186441	.	A	.	.	PASS	END=10186467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	10186468	.	T	.	.	PASS	END=10186488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	10186489	.	G	.	.	PASS	END=10186495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	10186496	.	G	.	.	PASS	END=10186502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr2	10186503	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:60
chr2	10186504	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:42:60
chr2	10186505	.	A	.	.	PASS	END=10186514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr2	10186515	.	T	.	.	PASS	END=10186549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr2	10186550	.	A	.	.	PASS	END=10186552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	10186553	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:21:60
chr2	10186554	.	G	.	.	PASS	END=10186555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr2	10186556	.	G	.	.	PASS	END=10186559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	10186560	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	10186561	.	G	.	.	PASS	END=10186567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	10186568	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	10186569	.	A	.	.	PASS	END=10186570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	10186571	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	10186572	.	G	.	.	PASS	END=10186584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	10186585	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	10186586	.	A	.	.	PASS	END=10186587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	10186588	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	10186589	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	10186590	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	10186591	.	A	.	.	PASS	END=10186592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	10186593	.	T	.	.	LowGQX	END=10186597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr2	10187726	.	A	.	.	LowGQX	END=10187731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	10187732	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr2	10187733	.	T	.	.	LowGQX	END=10187747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	10187748	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr2	10187749	.	C	.	.	PASS	END=10187769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	10187770	.	T	.	.	PASS	END=10187774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr2	10187775	.	A	.	.	PASS	END=10187777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	10187778	.	G	.	.	PASS	END=10187779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr2	10187780	.	A	.	.	PASS	END=10187784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr2	10187785	.	T	.	.	PASS	END=10187786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	10187787	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:36:60
chr2	10187788	.	T	.	.	PASS	END=10187791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr2	10187792	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:45:60
chr2	10187793	.	A	.	.	PASS	END=10187794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr2	10187795	.	A	.	.	PASS	END=10187799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr2	10187800	.	T	.	.	PASS	END=10187813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr2	10187814	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:38:60
chr2	10187815	.	A	.	.	PASS	END=10187827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr2	10187828	.	C	.	.	PASS	END=10187849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr2	10187850	.	A	.	.	PASS	END=10187870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	10187871	.	C	.	.	PASS	END=10187895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	10187896	.	A	.	.	PASS	END=10187923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	10187924	.	G	.	.	PASS	END=10187977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	10187978	.	G	.	.	PASS	END=10188001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	10188002	.	G	.	.	PASS	END=10188130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr2	10188131	.	T	.	.	PASS	END=10188152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	10188153	.	C	.	.	PASS	END=10188235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	10188236	.	A	.	.	PASS	END=10188320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	10188321	.	T	.	.	PASS	END=10188359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	10188360	.	T	.	.	PASS	END=10188445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	10188446	.	G	.	.	PASS	END=10188480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	10188481	.	G	.	.	PASS	END=10188512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	10188513	.	C	.	.	PASS	END=10188551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	10188552	.	A	.	.	PASS	END=10188579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr2	10188580	.	T	.	.	PASS	END=10188648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:268:99:60
chr2	10188649	.	A	T	8245.41	PASS	BaseQRankSum=1.922;DP=317;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=20.9756;MQ=60;MQ0=0;MQRankSum=0.773;QD=26.01;ReadPosRankSum=1.782;SB=-4379.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,314:317:99:8245,617,0:60:99:0.994
chr2	10188650	.	T	.	.	PASS	END=10188711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr2	10188712	.	C	.	.	PASS	END=10188728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr2	10188729	.	G	.	.	PASS	END=10188744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	10188745	.	C	.	.	PASS	END=10188762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	10188763	.	C	.	.	PASS	END=10188773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	10192303	.	A	.	.	PASS	END=10192345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	10192346	.	C	.	.	PASS	END=10192431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr2	10192432	.	G	.	.	PASS	END=10192590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr2	10192591	.	A	.	.	PASS	END=10192630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	10192631	.	C	.	.	PASS	END=10192662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	10192663	.	T	.	.	PASS	END=10192685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	10198978	.	C	.	.	LowGQX	END=10199087	GT	./.
chr2	10206008	.	A	.	.	LowGQX	END=10206012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10206013	.	T	.	.	LowGQX	.	GT	./.
chr2	10206014	.	G	.	.	LowGQX	END=10206021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10206022	.	G	.	.	LowGQX	.	GT	./.
chr2	10206023	.	G	.	.	LowGQX	END=10206037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10206038	.	C	.	.	LowGQX	.	GT	./.
chr2	10206039	.	A	.	.	LowGQX	END=10206049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10206050	.	C	.	.	LowGQX	.	GT	./.
chr2	10206051	.	C	.	.	LowGQX	END=10206107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10220020	.	C	.	.	LowGQX	END=10220359	GT	./.
chr2	10223907	.	A	.	.	LowGQX	END=10223932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10223933	.	C	.	.	LowGQX	END=10224007	GT	./.
chr2	10224008	.	G	.	.	LowGQX	END=10224072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	10225254	.	G	.	.	LowGQX	END=10225259	GT	./.
chr2	10225260	.	T	.	.	LowGQX	END=10225353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10226138	.	A	.	.	LowGQX	END=10226237	GT	./.
chr2	10262745	.	A	.	.	LowGQX	END=10262771	GT	./.
chr2	10262772	.	G	.	.	LowGQX	END=10262897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	10262898	.	G	.	.	LowGQX	END=10263026	GT	./.
chr2	10263038	.	G	.	.	LowGQX	END=10263197	GT	./.
chr2	10263490	.	A	.	.	LowGQX	END=10263659	GT	./.
chr2	10263861	.	A	.	.	LowGQX	END=10263927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	10263928	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	10263929	.	C	.	.	LowGQX	END=10263961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10263962	.	A	.	.	LowGQX	.	GT	./.
chr2	10263963	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10263964	.	A	.	.	LowGQX	END=10263981	GT	./.
chr2	10264792	.	T	.	.	LowGQX	END=10264979	GT	./.
chr2	10267000	.	A	.	.	LowGQX	END=10267099	GT	./.
chr2	10267212	.	A	.	.	LowGQX	END=10267349	GT	./.
chr2	10268973	.	A	.	.	LowGQX	END=10269081	GT	./.
chr2	10269166	.	A	.	.	LowGQX	END=10269283	GT	./.
chr2	10269359	.	A	.	.	LowGQX	END=10269436	GT	./.
chr2	10269437	.	G	.	.	LowGQX	END=10269494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10269495	.	C	.	.	LowGQX	.	GT	./.
chr2	10269496	.	T	.	.	LowGQX	END=10269515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10281996	.	G	.	.	LowGQX	END=10282095	GT	./.
chr2	10282380	.	A	.	.	LowGQX	END=10282389	GT	./.
chr2	10282390	.	A	.	.	LowGQX	END=10282504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10350435	.	A	.	.	LowGQX	END=10350725	GT	./.
chr2	10559882	.	C	.	.	LowGQX	END=10559916	GT	./.
chr2	10559917	.	G	.	.	LowGQX	END=10559940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10559941	.	A	.	.	LowGQX	.	GT	./.
chr2	10559942	.	C	.	.	LowGQX	END=10559956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10559957	.	A	.	.	LowGQX	.	GT	./.
chr2	10559958	.	C	.	.	LowGQX	END=10560033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10560034	.	A	.	.	LowGQX	.	GT	./.
chr2	10560035	.	T	.	.	LowGQX	END=10560037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10560038	.	A	.	.	LowGQX	.	GT	./.
chr2	10560039	.	C	.	.	LowGQX	END=10560040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10560041	.	C	.	.	LowGQX	.	GT	./.
chr2	10560042	.	C	.	.	LowGQX	END=10560053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10560054	.	C	.	.	LowGQX	.	GT	./.
chr2	10560055	.	T	.	.	LowGQX	END=10560067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10560068	.	C	.	.	LowGQX	END=10560173	GT	./.
chr2	10560174	.	G	.	.	LowGQX	END=10560209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10560210	.	C	.	.	LowGQX	.	GT	./.
chr2	10560211	.	C	.	.	LowGQX	END=10560247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10560248	.	T	.	.	LowGQX	.	GT	./.
chr2	10560249	.	G	.	.	LowGQX	END=10560263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10563107	.	A	.	.	LowGQX	END=10563206	GT	./.
chr2	10563207	.	C	.	.	LowGQX	END=10563232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10563233	.	G	A	47.39	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=23.69;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:79,6,0:60:6:1.000
chr2	10563234	.	G	.	.	LowGQX	END=10563255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	10564644	.	T	.	.	LowGQX	END=10564743	GT	./.
chr2	10566848	.	A	.	.	LowGQX	END=10566949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10580848	.	A	.	.	PASS	END=10580891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr2	10580892	.	T	.	.	PASS	END=10580996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:257:99:60
chr2	10581633	.	A	.	.	PASS	END=10581652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	10581653	.	A	.	.	PASS	END=10581698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	10581699	.	C	.	.	PASS	END=10581829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr2	10581830	.	T	.	.	PASS	END=10581851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr2	10581941	.	A	.	.	PASS	END=10581972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	10581973	.	G	.	.	PASS	END=10582057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr2	10582136	.	A	.	.	PASS	END=10582289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	10582290	.	A	.	.	PASS	END=10582302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	10583294	.	A	.	.	PASS	END=10583338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:81:60
chr2	10583339	.	G	.	.	PASS	END=10583383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	10583384	.	G	.	.	PASS	END=10583422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	10583423	.	C	.	.	PASS	END=10583447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	10583607	.	T	.	.	PASS	END=10583706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	10583826	.	A	.	.	PASS	END=10583865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	10583866	.	T	.	.	PASS	END=10583950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	10583951	.	C	.	.	PASS	END=10583964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	10584219	.	A	.	.	PASS	END=10584223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	10584224	.	G	.	.	PASS	END=10584269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr2	10584270	.	C	.	.	PASS	END=10584371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr2	10584372	.	T	.	.	PASS	END=10584390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr2	10584391	.	A	.	.	PASS	END=10584395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	10584598	.	A	.	.	PASS	END=10584611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	10584612	.	G	.	.	PASS	END=10584644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr2	10584645	.	C	.	.	PASS	END=10584751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:253:99:60
chr2	10584752	.	C	.	.	PASS	END=10584775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr2	10585055	.	A	.	.	PASS	END=10585149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	10585150	.	G	.	.	PASS	END=10585160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	10712196	.	A	.	.	LowGQX	END=10712305	GT	./.
chr2	10712306	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10712307	.	G	.	.	LowGQX	.	GT	./.
chr2	10712308	.	C	.	.	LowGQX	END=10712316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10717761	.	C	.	.	LowGQX	END=10717864	GT	./.
chr2	10729168	.	C	.	.	LowGQX	END=10729179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	10729180	.	C	.	.	LowGQX	END=10729416	GT	./.
chr2	10729703	.	C	.	.	LowGQX	END=10729738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10729739	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	10729740	.	T	.	.	LowGQX	END=10729759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10729760	.	T	.	.	LowGQX	.	GT	./.
chr2	10729761	.	A	.	.	LowGQX	END=10729779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10729780	.	T	.	.	LowGQX	.	GT	./.
chr2	10729781	.	T	.	.	LowGQX	END=10729870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10729871	.	G	.	.	LowGQX	END=10729877	GT	./.
chr2	10740918	.	A	.	.	LowGQX	END=10741073	GT	./.
chr2	10742901	.	C	.	.	LowGQX	END=10743000	GT	./.
chr2	10743194	.	T	.	.	LowGQX	END=10743293	GT	./.
chr2	10747310	.	C	.	.	LowGQX	END=10747350	GT	./.
chr2	10747351	.	A	.	.	LowGQX	END=10747474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	10747475	.	T	.	.	LowGQX	END=10747479	GT	./.
chr2	10762199	.	T	.	.	LowGQX	END=10762215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10762216	.	A	.	.	LowGQX	END=10762298	GT	./.
chr2	10774629	.	A	.	.	LowGQX	END=10774639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10774640	.	C	.	.	LowGQX	.	GT	./.
chr2	10774641	.	C	.	.	LowGQX	END=10774650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10774651	.	G	.	.	LowGQX	.	GT	./.
chr2	10774652	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10774653	.	T	.	.	LowGQX	.	GT	./.
chr2	10774654	.	G	.	.	LowGQX	END=10774664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10774665	.	T	.	.	LowGQX	END=10774721	GT	./.
chr2	10774722	.	G	.	.	LowGQX	END=10774728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10784422	.	G	.	.	LowGQX	END=10784574	GT	./.
chr2	10794536	.	T	.	.	LowGQX	END=10794689	GT	./.
chr2	10797867	.	C	.	.	LowGQX	END=10798017	GT	./.
chr2	10799287	.	A	.	.	LowGQX	END=10799311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10799312	.	T	.	.	LowGQX	END=10799386	GT	./.
chr2	10803078	.	T	.	.	LowGQX	END=10803117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10803118	.	T	.	.	LowGQX	.	GT	./.
chr2	10803119	.	C	.	.	LowGQX	END=10803150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10803151	.	T	.	.	LowGQX	.	GT	./.
chr2	10803152	.	C	.	.	LowGQX	END=10803176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10803177	.	A	.	.	LowGQX	.	GT	./.
chr2	10807324	.	T	.	.	LowGQX	END=10807423	GT	./.
chr2	10808767	.	T	.	.	LowGQX	END=10808787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10808788	.	C	.	.	LowGQX	END=10808866	GT	./.
chr2	10811679	.	C	.	.	LowGQX	END=10811816	GT	./.
chr2	10813615	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10813616	.	G	.	.	LowGQX	.	GT	./.
chr2	10813617	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10813618	.	C	.	.	LowGQX	END=10813619	GT	./.
chr2	10813620	.	G	.	.	LowGQX	END=10813627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10813628	.	C	.	.	LowGQX	.	GT	./.
chr2	10813629	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10813630	.	A	.	.	LowGQX	.	GT	./.
chr2	10813631	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10813632	.	G	.	.	LowGQX	.	GT	./.
chr2	10813633	.	C	.	.	LowGQX	END=10813648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10813649	.	T	.	.	LowGQX	END=10813650	GT	./.
chr2	10813651	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10813652	.	G	.	.	LowGQX	.	GT	./.
chr2	10813653	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10813654	.	A	.	.	LowGQX	END=10813714	GT	./.
chr2	10815849	.	C	.	.	LowGQX	.	GT	./.
chr2	10815850	.	A	.	.	LowGQX	END=10815851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	10815852	.	T	.	.	LowGQX	END=10815855	GT	./.
chr2	10815856	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10815857	.	A	.	.	LowGQX	.	GT	./.
chr2	10815858	.	A	.	.	LowGQX	END=10815859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10815860	.	C	.	.	LowGQX	END=10815863	GT	./.
chr2	10815864	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10815865	.	A	.	.	LowGQX	.	GT	./.
chr2	10815866	.	A	.	.	LowGQX	END=10815868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10815869	.	A	.	.	LowGQX	.	GT	./.
chr2	10815870	.	G	.	.	LowGQX	END=10815872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10815873	.	A	.	.	LowGQX	.	GT	./.
chr2	10815874	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10815875	.	C	.	.	LowGQX	.	GT	./.
chr2	10815876	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10815877	.	T	.	.	LowGQX	.	GT	./.
chr2	10815878	.	A	.	.	LowGQX	END=10815882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10815883	.	G	.	.	LowGQX	.	GT	./.
chr2	10815884	.	C	.	.	LowGQX	END=10815887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10815888	.	T	.	.	LowGQX	END=10815891	GT	./.
chr2	10815892	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10815893	.	T	.	.	LowGQX	.	GT	./.
chr2	10815894	.	G	.	.	LowGQX	END=10815896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10815897	.	T	.	.	LowGQX	.	GT	./.
chr2	10815898	.	T	.	.	LowGQX	END=10815899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10815900	.	A	.	.	LowGQX	END=10815901	GT	./.
chr2	10815902	.	A	.	.	LowGQX	END=10815904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10815905	.	T	.	.	LowGQX	.	GT	./.
chr2	10815906	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10815907	.	G	.	.	LowGQX	END=10815908	GT	./.
chr2	10815909	.	T	.	.	LowGQX	END=10815912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10815913	.	T	.	.	LowGQX	END=10815914	GT	./.
chr2	10815915	.	C	.	.	LowGQX	END=10815918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10815919	.	C	.	.	LowGQX	.	GT	./.
chr2	10815920	.	C	.	.	LowGQX	END=10815928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10815929	.	C	.	.	LowGQX	.	GT	./.
chr2	10815930	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10815931	.	A	.	.	LowGQX	.	GT	./.
chr2	10815932	.	A	.	.	LowGQX	END=10815936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10815937	.	C	.	.	LowGQX	END=10816008	GT	./.
chr2	10822026	.	A	.	.	LowGQX	END=10822138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10822139	.	T	.	.	LowGQX	END=10822195	GT	./.
chr2	10824666	.	G	.	.	LowGQX	END=10824688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10824689	.	T	.	.	LowGQX	END=10824765	GT	./.
chr2	10829905	.	G	.	.	LowGQX	END=10830004	GT	./.
chr2	10862974	.	G	.	.	LowGQX	END=10863106	GT	./.
chr2	10866612	.	T	.	.	LowGQX	END=10866711	GT	./.
chr2	10894100	.	T	.	.	LowGQX	END=10894199	GT	./.
chr2	10904455	.	A	.	.	LowGQX	END=10904528	GT	./.
chr2	10904529	.	G	.	.	LowGQX	END=10904540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10904541	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	10904542	.	A	.	.	LowGQX	END=10904554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	10908841	.	A	.	.	LowGQX	END=10908940	GT	./.
chr2	10911963	.	A	.	.	LowGQX	END=10911987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	10911988	.	T	.	.	LowGQX	.	GT	./.
chr2	10911989	.	G	.	.	LowGQX	END=10912012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10912013	.	C	.	.	LowGQX	.	GT	./.
chr2	10912014	.	T	.	.	LowGQX	END=10912041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10912042	.	C	.	.	LowGQX	END=10912043	GT	./.
chr2	10912044	.	C	.	.	LowGQX	END=10912052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10912053	.	A	.	.	LowGQX	END=10912065	GT	./.
chr2	10912653	.	T	.	.	LowGQX	END=10912752	GT	./.
chr2	10914911	.	C	.	.	LowGQX	END=10915010	GT	./.
chr2	10915101	.	A	.	.	LowGQX	END=10915200	GT	./.
chr2	10917709	.	A	.	.	LowGQX	END=10917815	GT	./.
chr2	10917816	.	G	.	.	LowGQX	END=10917834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10917835	.	A	.	.	LowGQX	.	GT	./.
chr2	10917836	.	G	.	.	LowGQX	END=10917850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10918696	.	A	.	.	LowGQX	END=10918756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10918757	.	C	.	.	LowGQX	.	GT	./.
chr2	10918758	.	A	.	.	LowGQX	END=10918759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10918760	.	C	.	.	LowGQX	.	GT	./.
chr2	10918761	.	A	.	.	LowGQX	END=10918764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10918765	.	C	.	.	LowGQX	END=10918797	GT	./.
chr2	10922367	.	A	.	.	LowGQX	END=10922373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	10922374	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	10922375	.	A	.	.	LowGQX	END=10922503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10923295	.	T	.	.	LowGQX	END=10923394	GT	./.
chr2	10924369	.	C	.	.	LowGQX	END=10924468	GT	./.
chr2	10925058	.	A	.	.	LowGQX	END=10925139	GT	./.
chr2	10925140	.	G	.	.	LowGQX	END=10925158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	10927375	.	A	.	.	LowGQX	END=10927567	GT	./.
chr2	10928810	.	C	.	.	LowGQX	END=10928909	GT	./.
chr2	10929016	.	G	.	.	LowGQX	END=10929115	GT	./.
chr2	10929873	.	A	.	.	LowGQX	END=10930017	GT	./.
chr2	10930843	.	A	.	.	LowGQX	END=10930961	GT	./.
chr2	10931919	.	A	.	.	LowGQX	END=10932036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10932037	.	A	.	.	LowGQX	.	GT	./.
chr2	10932038	.	C	.	.	LowGQX	END=10932053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10933220	.	A	.	.	LowGQX	END=10933224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10933225	.	T	.	.	LowGQX	END=10933330	GT	./.
chr2	10937155	.	A	.	.	LowGQX	END=10937335	GT	./.
chr2	10937805	.	T	.	.	LowGQX	END=10937904	GT	./.
chr2	10942623	.	A	.	.	LowGQX	END=10942802	GT	./.
chr2	10950324	.	T	.	.	LowGQX	END=10950423	GT	./.
chr2	10952704	.	G	.	.	LowGQX	END=10952863	GT	./.
chr2	10959390	.	C	.	.	LowGQX	END=10959489	GT	./.
chr2	10960894	.	C	.	.	LowGQX	END=10960993	GT	./.
chr2	10977641	.	C	.	.	LowGQX	END=10977651	GT	./.
chr2	10977652	.	C	.	.	LowGQX	END=10977658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10977659	.	A	.	.	LowGQX	.	GT	./.
chr2	10977660	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10977661	.	C	.	.	LowGQX	.	GT	./.
chr2	10977662	.	G	.	.	LowGQX	END=10977740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994492	.	G	.	.	LowGQX	END=10994499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994500	.	T	.	.	LowGQX	.	GT	./.
chr2	10994501	.	C	.	.	LowGQX	END=10994504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994505	.	C	.	.	LowGQX	END=10994506	GT	./.
chr2	10994507	.	C	.	.	LowGQX	END=10994508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994509	.	A	.	.	LowGQX	END=10994510	GT	./.
chr2	10994511	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994512	.	C	.	.	LowGQX	.	GT	./.
chr2	10994513	.	A	.	.	LowGQX	END=10994516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994517	.	A	.	.	LowGQX	.	GT	./.
chr2	10994518	.	G	.	.	LowGQX	END=10994528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994529	.	T	.	.	LowGQX	.	GT	./.
chr2	10994530	.	C	.	.	LowGQX	END=10994535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994536	.	C	.	.	LowGQX	END=10994537	GT	./.
chr2	10994538	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994539	.	A	.	.	LowGQX	.	GT	./.
chr2	10994540	.	C	.	.	LowGQX	END=10994546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994547	.	T	.	.	LowGQX	.	GT	./.
chr2	10994548	.	G	.	.	LowGQX	END=10994551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994552	.	A	.	.	LowGQX	.	GT	./.
chr2	10994553	.	C	.	.	LowGQX	END=10994558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994559	.	G	.	.	LowGQX	.	GT	./.
chr2	10994560	.	C	.	.	LowGQX	END=10994584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994585	.	A	.	.	LowGQX	.	GT	./.
chr2	10994586	.	C	.	.	LowGQX	END=10994592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994593	.	T	.	.	LowGQX	END=10994726	GT	./.
chr2	10994963	.	A	.	.	LowGQX	.	GT	./.
chr2	10994964	.	C	.	.	LowGQX	END=10994966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994967	.	A	.	.	LowGQX	.	GT	./.
chr2	10994968	.	C	.	.	LowGQX	END=10994969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994970	.	T	.	.	LowGQX	.	GT	./.
chr2	10994971	.	G	.	.	LowGQX	END=10994976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994977	.	T	.	.	LowGQX	.	GT	./.
chr2	10994978	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994979	.	T	.	.	LowGQX	.	GT	./.
chr2	10994980	.	T	.	.	LowGQX	END=10994982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994983	.	C	.	.	LowGQX	END=10994984	GT	./.
chr2	10994985	.	A	.	.	LowGQX	END=10994987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994988	.	G	.	.	LowGQX	END=10994989	GT	./.
chr2	10994990	.	T	.	.	LowGQX	END=10994997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10994998	.	A	.	.	LowGQX	.	GT	./.
chr2	10994999	.	T	.	.	LowGQX	END=10995000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10995001	.	C	.	.	LowGQX	.	GT	./.
chr2	10995002	.	T	.	.	LowGQX	END=10995008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10995009	.	A	.	.	LowGQX	.	GT	./.
chr2	10995010	.	G	.	.	LowGQX	END=10995011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10995012	.	T	.	.	LowGQX	.	GT	./.
chr2	10995013	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10995014	.	T	.	.	LowGQX	.	GT	./.
chr2	10995015	.	T	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr2	10995016	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	10995017	.	A	.	.	LowGQX	END=10995054	GT	./.
chr2	10995055	.	A	.	.	LowGQX	END=10995062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11052551	.	G	.	.	LowGQX	END=11053397	GT	./.
chr2	11053398	.	G	.	.	LowGQX	END=11053420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053421	.	A	.	.	LowGQX	.	GT	./.
chr2	11053422	.	G	.	.	LowGQX	END=11053446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053447	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	11053448	.	G	.	.	LowGQX	END=11053547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053548	.	A	.	.	LowGQX	.	GT	./.
chr2	11053549	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053550	.	T	.	.	LowGQX	.	GT	./.
chr2	11053551	.	G	.	.	LowGQX	END=11053553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053554	.	T	.	.	LowGQX	.	GT	./.
chr2	11053555	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053556	.	T	.	.	LowGQX	.	GT	./.
chr2	11053557	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053558	.	T	.	.	LowGQX	.	GT	./.
chr2	11053559	.	T	.	.	LowGQX	END=11053563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053564	.	T	.	.	LowGQX	.	GT	./.
chr2	11053565	.	T	.	.	LowGQX	END=11053566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053567	.	T	.	.	LowGQX	.	GT	./.
chr2	11053568	.	C	.	.	LowGQX	END=11053605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053606	.	A	.	.	LowGQX	.	GT	./.
chr2	11053607	.	C	.	.	LowGQX	END=11053611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053612	.	T	.	.	LowGQX	.	GT	./.
chr2	11053613	.	T	.	.	LowGQX	END=11053643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053644	.	C	.	.	LowGQX	.	GT	./.
chr2	11053645	.	A	.	.	LowGQX	END=11053656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053657	.	A	.	.	LowGQX	.	GT	./.
chr2	11053658	.	C	.	.	LowGQX	END=11053659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053660	.	A	.	.	LowGQX	.	GT	./.
chr2	11053661	.	C	.	.	LowGQX	END=11053675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053676	.	A	.	.	LowGQX	.	GT	./.
chr2	11053677	.	C	.	.	LowGQX	END=11053681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053682	.	A	.	.	LowGQX	.	GT	./.
chr2	11053683	.	C	.	.	LowGQX	END=11053689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053690	.	A	.	.	LowGQX	.	GT	./.
chr2	11053691	.	C	.	.	LowGQX	END=11053692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053693	.	A	.	.	LowGQX	.	GT	./.
chr2	11053694	.	C	.	.	LowGQX	END=11053698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053699	.	G	.	.	LowGQX	.	GT	./.
chr2	11053700	.	G	.	.	LowGQX	END=11053705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053706	.	T	.	.	LowGQX	.	GT	./.
chr2	11053707	.	C	.	.	LowGQX	END=11053712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053713	.	G	.	.	LowGQX	.	GT	./.
chr2	11053714	.	G	.	.	LowGQX	END=11053716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053717	.	A	.	.	LowGQX	.	GT	./.
chr2	11053718	.	T	.	.	LowGQX	END=11053719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053720	.	A	.	.	LowGQX	END=11053936	GT	./.
chr2	11053937	.	C	.	.	LowGQX	END=11053942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053943	.	G	.	.	LowGQX	.	GT	./.
chr2	11053944	.	C	.	.	LowGQX	END=11053964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11053965	.	C	.	.	LowGQX	.	GT	./.
chr2	11053966	.	C	.	.	LowGQX	END=11054034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11054035	.	T	.	.	LowGQX	.	GT	./.
chr2	11054036	.	G	.	.	LowGQX	END=11054039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11245717	.	T	.	.	LowGQX	END=11245816	GT	./.
chr2	11260889	.	C	.	.	LowGQX	END=11261077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11261078	.	A	.	.	LowGQX	END=11261088	GT	./.
chr2	11264709	.	C	.	.	LowGQX	END=11264745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11264746	.	C	.	.	LowGQX	END=11264911	GT	./.
chr2	11268836	.	G	.	.	LowGQX	END=11268935	GT	./.
chr2	11273449	.	C	.	.	LowGQX	END=11273728	GT	./.
chr2	11280606	.	T	.	.	LowGQX	END=11280705	GT	./.
chr2	11284044	.	A	.	.	LowGQX	END=11284239	GT	./.
chr2	11295259	.	G	.	.	LowGQX	END=11295418	GT	./.
chr2	11295623	.	G	.	.	LowGQX	END=11295753	GT	./.
chr2	11295754	.	G	.	.	LowGQX	END=11295817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11300584	.	C	.	.	LowGQX	END=11300611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11300612	.	A	.	.	LowGQX	.	GT	./.
chr2	11300613	.	C	.	.	LowGQX	END=11300683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11300740	.	C	.	.	LowGQX	END=11300795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11300796	.	A	.	.	LowGQX	END=11300839	GT	./.
chr2	11304258	.	T	.	.	LowGQX	END=11304282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11304283	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	11304284	.	C	.	.	LowGQX	END=11304293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11304294	.	G	.	.	LowGQX	.	GT	./.
chr2	11304295	.	G	.	.	LowGQX	END=11304306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11304307	.	T	.	.	LowGQX	.	GT	./.
chr2	11304308	.	G	.	.	LowGQX	END=11304310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11304311	.	T	.	.	LowGQX	END=11304408	GT	./.
chr2	11312049	.	A	.	.	LowGQX	END=11312173	GT	./.
chr2	11312843	.	A	.	.	LowGQX	END=11312933	GT	./.
chr2	11312934	.	T	.	.	LowGQX	END=11312942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11315065	.	T	.	.	LowGQX	END=11315164	GT	./.
chr2	11317859	.	T	.	.	LowGQX	END=11317916	GT	./.
chr2	11317917	.	T	.	.	LowGQX	END=11317927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11317928	.	C	.	.	LowGQX	.	GT	./.
chr2	11317929	.	G	.	.	LowGQX	END=11317958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11323515	.	T	.	.	PASS	END=11323529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	11323530	.	A	.	.	PASS	END=11323591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	11323592	.	A	.	.	PASS	END=11323614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	11332272	.	A	.	.	PASS	END=11332395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	11332396	.	C	.	.	PASS	END=11332432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr2	11332433	.	T	.	.	PASS	END=11332489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr2	11332575	.	A	.	.	PASS	END=11332628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr2	11332629	.	C	.	.	PASS	END=11332675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	11332676	.	T	.	.	PASS	END=11332736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	11332737	.	A	.	.	PASS	END=11332816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	11332817	.	C	.	.	PASS	END=11332840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	11333843	.	T	.	.	PASS	END=11333879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr2	11333880	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:57:60
chr2	11333881	.	A	.	.	PASS	END=11333935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:80:60
chr2	11333936	.	G	.	.	PASS	END=11333961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:78:60
chr2	11333962	.	T	.	.	PASS	END=11333983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr2	11333984	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:54:60
chr2	11333985	.	T	.	.	PASS	END=11333994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr2	11334377	.	C	.	.	PASS	END=11334412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr2	11334413	.	G	.	.	PASS	END=11334446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	11334447	.	C	.	.	PASS	END=11334472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	11334473	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:60:60
chr2	11334474	.	T	.	.	PASS	END=11334482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr2	11334483	.	G	.	.	PASS	END=11334529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr2	11335067	.	A	.	.	PASS	END=11335146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr2	11335147	.	T	.	.	PASS	END=11335166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr2	11337304	.	A	.	.	PASS	END=11337338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	11337339	.	G	.	.	PASS	END=11337355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr2	11337356	.	G	.	.	PASS	END=11337476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr2	11337650	.	A	.	.	PASS	END=11337799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr2	11337800	.	C	.	.	PASS	END=11337833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr2	11338615	.	A	.	.	PASS	END=11338651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	11338652	.	T	.	.	PASS	END=11338707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	11338708	.	A	.	.	PASS	END=11338714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	11338804	.	T	.	.	PASS	END=11338816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	11338817	.	A	.	.	PASS	END=11338846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	11338847	.	C	.	.	PASS	END=11338882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	11338883	.	C	.	.	PASS	END=11338903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	11341081	.	A	.	.	PASS	END=11341111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	11341112	.	G	.	.	PASS	END=11341177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	11341178	.	A	.	.	PASS	END=11341267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	11341268	.	C	.	.	PASS	END=11341271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	11341434	.	A	.	.	PASS	END=11341536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	11341537	.	G	.	.	PASS	END=11341541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr2	11342163	.	G	.	.	PASS	END=11342172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr2	11342173	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:72:60
chr2	11342174	.	T	.	.	PASS	END=11342186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	11342187	.	C	.	.	PASS	END=11342214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	11342215	.	T	.	.	PASS	END=11342262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	11347850	.	A	.	.	PASS	END=11347989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	11347990	.	C	.	.	PASS	END=11348005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	11348006	.	C	.	.	PASS	END=11348049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	11348411	.	A	.	.	PASS	END=11348481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	11348482	.	G	.	.	PASS	END=11348568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	11348569	.	C	.	.	PASS	END=11348575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	11351805	.	A	.	.	PASS	END=11351832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	11351833	.	T	.	.	PASS	END=11351968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	11354481	.	A	.	.	PASS	END=11354503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	11354504	.	C	.	.	PASS	END=11354591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	11354964	.	A	.	.	PASS	END=11355029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	11355030	.	C	.	.	PASS	END=11355180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr2	11355181	.	T	.	.	PASS	END=11355205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	11355206	.	C	.	.	PASS	END=11355214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	11355443	.	C	.	.	PASS	END=11355542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	11355634	.	A	.	.	PASS	END=11355735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	11355736	.	T	.	.	PASS	END=11355752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:94:60
chr2	11355753	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr2	11355754	.	A	.	.	PASS	END=11355760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:77:60
chr2	11355761	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:51:60
chr2	11355762	.	G	.	.	PASS	END=11355765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr2	11355766	.	G	.	.	PASS	END=11355773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr2	11356259	.	T	.	.	PASS	END=11356351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	11356352	.	A	.	.	PASS	END=11356358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	11357206	.	C	.	.	PASS	END=11357284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	11357285	.	T	.	.	PASS	END=11357305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	11357398	.	T	.	.	PASS	END=11357415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	11357416	.	T	.	.	PASS	END=11357429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:90:60
chr2	11357430	.	C	.	.	PASS	END=11357439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr2	11357440	.	T	.	.	PASS	END=11357456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr2	11357457	.	A	.	.	PASS	END=11357473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	11357474	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:3:60
chr2	11357475	.	T	.	.	PASS	END=11357495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr2	11357496	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:2:60
chr2	11357497	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr2	11358535	.	A	.	.	PASS	END=11358569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	11358570	.	C	.	.	PASS	END=11358610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	11358611	.	A	.	.	PASS	END=11358634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	11359020	.	A	.	.	PASS	END=11359030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	11359031	.	G	T	814.06	PASS	BaseQRankSum=2.565;DP=71;Dels=0.00;FS=0.954;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=0.628;QD=11.47;ReadPosRankSum=-0.086;SB=-349.47	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,33:71:99:844,0,904:60:99:0.465
chr2	11359032	.	A	.	.	PASS	END=11359119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	11359120	.	G	T	816.15	PASS	BaseQRankSum=1.651;DP=67;Dels=0.00;FS=5.082;HRun=3;HaplotypeScore=0.9997;MQ=60;MQ0=0;MQRankSum=-0.664;QD=12.18;ReadPosRankSum=1.512;SB=-432.86	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,29:67:99:846,0,1142:60:99:0.433
chr2	11359121	.	T	.	.	PASS	END=11359152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	11359153	.	C	.	.	PASS	END=11359172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	11361322	.	A	.	.	PASS	END=11361334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	11361335	.	A	.	.	PASS	END=11361461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr2	11361462	.	T	.	.	PASS	END=11361477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	11361478	.	C	.	.	PASS	END=11361511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	11362205	.	T	.	.	PASS	END=11362219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	11362220	.	T	.	.	PASS	END=11362291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	11362292	.	C	.	.	PASS	END=11362304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	11364446	.	A	.	.	PASS	END=11364483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr2	11364484	.	T	.	.	PASS	END=11364560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	11364561	.	T	.	.	PASS	END=11364620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr2	11364621	.	A	.	.	PASS	END=11364629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	11364630	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:72:60
chr2	11364631	.	A	.	.	PASS	END=11364645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr2	11367378	.	A	.	.	PASS	END=11367398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr2	11367399	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:60
chr2	11367400	.	A	.	.	PASS	END=11367418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr2	11367419	.	A	.	.	PASS	END=11367512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	11367513	.	T	.	.	PASS	END=11367526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr2	11375826	.	A	.	.	PASS	END=11375902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	11375903	.	C	.	.	PASS	END=11375987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	11375988	.	T	.	.	PASS	END=11376053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	11376054	.	T	.	.	PASS	END=11376058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	11376059	.	A	.	.	PASS	END=11376072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	11376073	.	G	.	.	PASS	END=11376088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	11376089	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:75:60
chr2	11376090	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:99:60
chr2	11389785	.	A	.	.	PASS	END=11389806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr2	11389807	.	T	.	.	PASS	END=11389848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr2	11389849	.	A	.	.	PASS	END=11389901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr2	11389902	.	T	.	.	PASS	END=11389919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr2	11389920	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:27:60
chr2	11389921	.	G	.	.	PASS	END=11389926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	11426663	.	A	.	.	PASS	END=11426738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	11426739	.	C	.	.	PASS	END=11426767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	11427719	.	A	.	.	PASS	END=11427773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	11427774	.	T	.	.	PASS	END=11427841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	11427842	.	G	.	.	PASS	END=11427871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	11484089	.	C	.	.	PASS	END=11484166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	11484167	.	C	.	.	PASS	END=11484204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr2	11484205	.	C	.	.	PASS	END=11484214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	11484215	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:63:60
chr2	11484216	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:99:60
chr2	11484217	.	T	.	.	PASS	END=11484219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:69:60
chr2	11484220	.	C	.	.	PASS	END=11484228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr2	11484229	.	C	.	.	PASS	END=11484243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr2	11484244	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:60
chr2	11484245	.	C	.	.	PASS	END=11484273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	11484274	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:57:60
chr2	11484275	.	G	.	.	PASS	END=11484290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	11484291	.	T	.	.	PASS	END=11484299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	11586577	.	A	.	.	LowGQX	END=11586622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11586623	.	A	.	.	LowGQX	.	GT	./.
chr2	11586624	.	T	.	.	LowGQX	END=11586628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11586629	.	C	.	.	LowGQX	END=11586630	GT	./.
chr2	11586631	.	C	.	.	LowGQX	END=11586643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11586644	.	T	.	.	LowGQX	.	GT	./.
chr2	11586645	.	T	.	.	LowGQX	END=11586652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11586653	.	G	.	.	LowGQX	.	GT	./.
chr2	11586654	.	A	.	.	LowGQX	END=11586658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11586659	.	A	.	.	LowGQX	.	GT	./.
chr2	11586660	.	A	.	.	LowGQX	END=11586661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11586662	.	A	.	.	LowGQX	.	GT	./.
chr2	11586663	.	C	.	.	LowGQX	END=11586666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11586667	.	A	.	.	LowGQX	.	GT	./.
chr2	11586668	.	G	.	.	LowGQX	END=11586674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11586675	.	A	.	.	LowGQX	.	GT	./.
chr2	11586676	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11587751	.	A	.	.	LowGQX	END=11587902	GT	./.
chr2	11590136	.	A	.	.	LowGQX	END=11590254	GT	./.
chr2	11591775	.	A	.	.	LowGQX	END=11591817	GT	./.
chr2	11591818	.	A	.	.	LowGQX	END=11591831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11591832	.	T	.	.	LowGQX	.	GT	./.
chr2	11591833	.	T	.	.	LowGQX	END=11591888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11591889	.	T	.	.	LowGQX	.	GT	./.
chr2	11591890	.	C	.	.	LowGQX	END=11591911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11591912	.	A	.	.	LowGQX	.	GT	./.
chr2	11591913	.	A	.	.	LowGQX	END=11591921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11591922	.	G	.	.	LowGQX	.	GT	./.
chr2	11591923	.	A	.	.	LowGQX	END=11591967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11591968	.	C	.	.	LowGQX	END=11591984	GT	./.
chr2	11593706	.	A	.	.	LowGQX	END=11593926	GT	./.
chr2	11595550	.	A	.	.	LowGQX	END=11595649	GT	./.
chr2	11597223	.	A	.	.	LowGQX	END=11597291	GT	./.
chr2	11597292	.	G	.	.	LowGQX	END=11597382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11598363	.	G	.	.	LowGQX	END=11598395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11598396	.	A	.	.	LowGQX	END=11598506	GT	./.
chr2	11605842	.	G	.	.	LowGQX	END=11606007	GT	./.
chr2	11696739	.	A	.	.	LowGQX	END=11696899	GT	./.
chr2	11702536	.	C	.	.	LowGQX	END=11702756	GT	./.
chr2	11706604	.	A	.	.	LowGQX	END=11706784	GT	./.
chr2	11716477	.	A	.	.	LowGQX	END=11716493	GT	./.
chr2	11716494	.	G	.	.	LowGQX	END=11716561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11716562	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	11716563	.	C	.	.	LowGQX	END=11716663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11718421	.	A	.	.	LowGQX	END=11718559	GT	./.
chr2	11720828	.	A	.	.	LowGQX	END=11720858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11720859	.	G	.	.	LowGQX	END=11721149	GT	./.
chr2	11725215	.	C	.	.	LowGQX	END=11725402	GT	./.
chr2	11725886	.	A	.	.	LowGQX	END=11726033	GT	./.
chr2	11727494	.	C	.	.	LowGQX	END=11727593	GT	./.
chr2	11728811	.	A	.	.	LowGQX	END=11728857	GT	./.
chr2	11728858	.	C	.	.	LowGQX	END=11728868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11728869	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	11728870	.	A	.	.	LowGQX	END=11728878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11728879	.	G	.	.	LowGQX	.	GT	./.
chr2	11728880	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11728881	.	A	.	.	LowGQX	END=11728882	GT	./.
chr2	11728883	.	T	.	.	LowGQX	END=11728910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11728911	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	11728912	.	C	.	.	LowGQX	END=11728964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	11728965	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	11728966	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	11728967	.	C	.	.	LowGQX	END=11728971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	11728972	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	11728973	.	T	.	.	LowGQX	END=11728976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	11728977	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	11728978	.	G	.	.	LowGQX	END=11728983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	11728984	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	11728985	.	G	.	.	LowGQX	END=11729000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	11729001	.	A	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr2	11729002	.	G	.	.	LowGQX	END=11729059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	11731487	.	C	.	.	LowGQX	END=11731586	GT	./.
chr2	11732900	.	A	.	.	LowGQX	END=11733254	GT	./.
chr2	11735375	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735376	.	G	.	.	LowGQX	.	GT	./.
chr2	11735377	.	G	.	.	LowGQX	END=11735383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735384	.	C	.	.	LowGQX	.	GT	./.
chr2	11735385	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735386	.	A	.	.	LowGQX	END=11735387	GT	./.
chr2	11735388	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735389	.	C	.	.	LowGQX	END=11735390	GT	./.
chr2	11735391	.	C	.	.	LowGQX	END=11735392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735393	.	G	.	.	LowGQX	.	GT	./.
chr2	11735394	.	A	.	.	LowGQX	END=11735398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735399	.	T	.	.	LowGQX	.	GT	./.
chr2	11735400	.	T	.	.	LowGQX	END=11735401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735402	.	C	.	.	LowGQX	.	GT	./.
chr2	11735403	.	G	.	.	LowGQX	END=11735404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735405	.	G	.	.	LowGQX	.	GT	./.
chr2	11735406	.	A	.	.	LowGQX	END=11735412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735413	.	T	.	.	LowGQX	.	GT	./.
chr2	11735414	.	C	.	.	LowGQX	END=11735419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735420	.	T	.	.	LowGQX	.	GT	./.
chr2	11735421	.	G	.	.	LowGQX	END=11735422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735423	.	G	.	.	LowGQX	.	GT	./.
chr2	11735424	.	G	.	.	LowGQX	END=11735437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735438	.	A	.	.	LowGQX	.	GT	./.
chr2	11735439	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735440	.	T	.	.	LowGQX	.	GT	./.
chr2	11735441	.	C	.	.	LowGQX	END=11735443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735444	.	T	.	.	LowGQX	END=11735446	GT	./.
chr2	11735447	.	C	.	.	LowGQX	END=11735448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735449	.	A	.	.	LowGQX	.	GT	./.
chr2	11735450	.	G	.	.	LowGQX	END=11735458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735459	.	G	.	.	LowGQX	END=11735460	GT	./.
chr2	11735461	.	G	.	.	LowGQX	END=11735463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735464	.	A	.	.	LowGQX	END=11735465	GT	./.
chr2	11735466	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735467	.	T	.	.	LowGQX	.	GT	./.
chr2	11735468	.	A	.	.	LowGQX	END=11735469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735470	.	A	.	.	LowGQX	.	GT	./.
chr2	11735471	.	C	.	.	LowGQX	END=11735477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735478	.	G	.	.	LowGQX	.	GT	./.
chr2	11735479	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735480	.	G	.	.	LowGQX	.	GT	./.
chr2	11735481	.	G	.	.	LowGQX	END=11735483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11735484	.	T	.	.	LowGQX	END=11735488	GT	./.
chr2	11735489	.	T	.	.	LowGQX	END=11735491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	11735492	.	C	.	.	LowGQX	.	GT	./.
chr2	11735493	.	A	.	.	LowGQX	END=11735494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	11735495	.	C	.	.	LowGQX	END=11735497	GT	./.
chr2	11735498	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	11735499	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	11735500	.	G	.	.	LowGQX	END=11735501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	11735502	.	C	.	.	LowGQX	END=11735504	GT	./.
chr2	11735505	.	G	.	.	LowGQX	END=11735507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11736235	.	A	.	.	LowGQX	END=11736367	GT	./.
chr2	11737905	.	A	.	.	LowGQX	END=11738106	GT	./.
chr2	11738804	.	A	.	.	LowGQX	END=11738923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11738924	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	11738925	.	T	.	.	LowGQX	END=11738987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11738988	.	T	.	.	LowGQX	.	GT	./.
chr2	11740914	.	C	.	.	LowGQX	END=11741123	GT	./.
chr2	11742530	.	A	.	.	LowGQX	END=11742670	GT	./.
chr2	11750812	.	A	.	.	LowGQX	END=11750856	GT	./.
chr2	11750857	.	G	.	.	LowGQX	END=11750861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11750862	.	G	.	.	LowGQX	.	GT	./.
chr2	11750863	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	11750864	.	A	.	.	LowGQX	END=11750928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11750929	.	A	.	.	LowGQX	.	GT	./.
chr2	11750930	.	C	.	.	LowGQX	END=11750964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11750965	.	A	.	.	LowGQX	.	GT	./.
chr2	11750966	.	A	.	.	LowGQX	END=11750993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11750994	.	G	.	.	LowGQX	.	GT	./.
chr2	11750995	.	G	.	.	LowGQX	END=11751006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11751007	.	G	.	.	LowGQX	END=11751043	GT	./.
chr2	11751044	.	G	.	.	LowGQX	END=11751046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11751047	.	T	.	.	LowGQX	.	GT	./.
chr2	11751048	.	G	.	.	LowGQX	END=11751052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11751053	.	A	.	.	LowGQX	.	GT	./.
chr2	11751054	.	C	.	.	LowGQX	END=11751055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11751056	.	T	.	.	LowGQX	.	GT	./.
chr2	11751057	.	G	.	.	LowGQX	END=11751060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11751061	.	G	.	.	LowGQX	.	GT	./.
chr2	11751062	.	C	.	.	LowGQX	END=11751067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11751068	.	T	.	.	LowGQX	.	GT	./.
chr2	11751069	.	G	.	.	LowGQX	END=11751080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11751081	.	G	.	.	LowGQX	.	GT	./.
chr2	11751082	.	C	.	.	LowGQX	END=11751137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11751138	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	11751139	.	G	.	.	LowGQX	END=11751155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	11752619	.	A	.	.	LowGQX	END=11752738	GT	./.
chr2	11755215	.	A	.	.	LowGQX	END=11755418	GT	./.
chr2	11756752	.	A	.	.	LowGQX	END=11756851	GT	./.
chr2	11758412	.	A	.	.	LowGQX	END=11758800	GT	./.
chr2	11758801	.	A	.	.	LowGQX	END=11758878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	11758879	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	11758880	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	11758881	.	T	.	.	LowGQX	.	GT	./.
chr2	11758882	.	C	.	.	LowGQX	END=11758891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	11758892	.	C	.	.	LowGQX	END=11759047	GT	./.
chr2	11761029	.	A	.	.	LowGQX	END=11761135	GT	./.
chr2	11765278	.	A	.	.	LowGQX	END=11765440	GT	./.
chr2	11767046	.	T	.	.	LowGQX	END=11767049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:58
chr2	11767050	.	C	.	33.01	LowGQX	DP=3;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:58:3
chr2	11767051	.	T	.	.	LowGQX	END=11767058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:58
chr2	11767059	.	G	.	33.01	LowGQX	DP=3;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:58:3
chr2	11767060	.	C	.	.	LowGQX	END=11767074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:58
chr2	11767075	.	G	.	33.01	LowGQX	DP=3;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:58:3
chr2	11767076	.	A	.	.	LowGQX	END=11767078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:58
chr2	11767079	.	T	.	33.01	LowGQX	DP=3;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:58:3
chr2	11767080	.	T	.	.	LowGQX	END=11767084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:58
chr2	11767085	.	C	.	33.01	LowGQX	DP=3;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:58:3
chr2	11767086	.	A	.	.	LowGQX	END=11767088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:58
chr2	11767089	.	C	.	33.01	LowGQX	DP=3;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:58:3
chr2	11767090	.	A	.	.	LowGQX	END=11767092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:58
chr2	11767093	.	G	.	33.01	LowGQX	DP=3;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:58:3
chr2	11767094	.	G	.	.	LowGQX	END=11767124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:58
chr2	11767125	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	11767126	.	C	.	.	LowGQX	END=11767128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	11767129	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	11767130	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr2	11767131	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	11767132	.	C	.	.	LowGQX	END=11767141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	11767142	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	11767143	.	G	.	.	LowGQX	END=11767149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	11767150	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	11767151	.	T	.	.	LowGQX	END=11767162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	11767163	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	11767164	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr2	11767165	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	11767166	.	C	.	.	LowGQX	END=11767182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11767183	.	C	.	.	LowGQX	END=11767184	GT	./.
chr2	11767185	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11767186	.	T	.	.	LowGQX	END=11767187	GT	./.
chr2	11767188	.	T	.	.	LowGQX	END=11767189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11767190	.	A	.	.	LowGQX	.	GT	./.
chr2	11767191	.	G	.	.	LowGQX	END=11767193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11767194	.	G	.	.	LowGQX	.	GT	./.
chr2	11767195	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11767196	.	G	.	.	LowGQX	END=11767198	GT	./.
chr2	11767199	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11767200	.	C	.	.	LowGQX	END=11767201	GT	./.
chr2	11767202	.	A	.	.	LowGQX	END=11767204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11767205	.	A	.	.	LowGQX	.	GT	./.
chr2	11767206	.	C	.	.	LowGQX	END=11767208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11767209	.	G	.	.	LowGQX	END=11767210	GT	./.
chr2	11767211	.	G	.	.	LowGQX	END=11767213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11767214	.	T	.	.	LowGQX	END=11767215	GT	./.
chr2	11767216	.	C	.	.	LowGQX	END=11767218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11767219	.	C	.	.	LowGQX	END=11767221	GT	./.
chr2	11767222	.	C	.	.	LowGQX	END=11767223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11767224	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr2	11767225	.	T	.	.	LowGQX	END=11767226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11767227	.	C	.	.	LowGQX	.	GT	./.
chr2	11767228	.	C	.	.	LowGQX	END=11767232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11770072	.	A	.	.	LowGQX	END=11770237	GT	./.
chr2	11772033	.	A	.	.	LowGQX	END=11772227	GT	./.
chr2	11772228	.	G	.	.	LowGQX	END=11772241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11773013	.	A	.	.	LowGQX	END=11773177	GT	./.
chr2	11773178	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11773179	.	G	.	.	LowGQX	.	GT	./.
chr2	11773180	.	A	.	.	LowGQX	END=11773191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11774255	.	A	.	.	LowGQX	END=11774477	GT	./.
chr2	11775363	.	C	.	.	LowGQX	END=11775425	GT	./.
chr2	11775426	.	G	.	.	LowGQX	END=11775533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11777840	.	A	.	.	LowGQX	END=11778029	GT	./.
chr2	11778030	.	C	.	.	LowGQX	END=11778044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11778795	.	A	.	.	LowGQX	END=11778937	GT	./.
chr2	11780415	.	A	.	.	LowGQX	END=11780458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11780459	.	G	.	.	LowGQX	.	GT	./.
chr2	11780460	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11780461	.	C	.	.	LowGQX	END=11780604	GT	./.
chr2	11798603	.	A	.	.	LowGQX	END=11798850	GT	./.
chr2	11800165	.	T	.	.	LowGQX	END=11800264	GT	./.
chr2	11802091	.	A	.	.	LowGQX	END=11802368	GT	./.
chr2	11809630	.	A	.	.	LowGQX	END=11809819	GT	./.
chr2	11809820	.	G	.	.	LowGQX	END=11809829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11809830	.	A	.	.	LowGQX	.	GT	./.
chr2	11809831	.	C	.	.	LowGQX	END=11809884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11809885	.	A	.	.	LowGQX	.	GT	./.
chr2	11809886	.	G	.	.	LowGQX	END=11809919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11809920	.	G	.	.	LowGQX	.	GT	./.
chr2	11809921	.	T	.	.	LowGQX	END=11809933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11809934	.	A	.	.	LowGQX	.	GT	./.
chr2	11809935	.	G	.	.	LowGQX	END=11809971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11809972	.	A	.	.	LowGQX	.	GT	./.
chr2	11809973	.	C	.	.	LowGQX	END=11809980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11809981	.	T	.	.	LowGQX	END=11809982	GT	./.
chr2	11809983	.	G	.	.	LowGQX	END=11809984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11809985	.	G	.	.	LowGQX	.	GT	./.
chr2	11809986	.	C	.	.	LowGQX	END=11810043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11810044	.	T	.	.	LowGQX	.	GT	./.
chr2	11810045	.	G	.	.	LowGQX	END=11810046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11810047	.	T	.	.	LowGQX	.	GT	./.
chr2	11810048	.	G	.	.	LowGQX	END=11810094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11810095	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	11810096	.	C	.	.	LowGQX	END=11810106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11810107	.	T	.	.	LowGQX	END=11810257	GT	./.
chr2	11817764	.	A	.	.	LowGQX	END=11817777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11817778	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	11817779	.	G	.	.	LowGQX	END=11817788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11817789	.	G	.	.	LowGQX	.	GT	./.
chr2	11817790	.	G	.	.	LowGQX	END=11817863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11853860	.	T	.	.	LowGQX	END=11853930	GT	./.
chr2	11853931	.	A	.	.	LowGQX	END=11853934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11853935	.	T	.	.	LowGQX	.	GT	./.
chr2	11853936	.	A	.	.	LowGQX	END=11853956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11853957	.	G	.	.	LowGQX	.	GT	./.
chr2	11853958	.	A	.	.	LowGQX	END=11853959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11881500	.	A	.	.	LowGQX	END=11881599	GT	./.
chr2	11905613	.	G	.	.	PASS	END=11905619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr2	11905620	.	T	.	.	PASS	END=11905636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr2	11905636	.	GT	G	467.79	PASS	BaseQRankSum=-0.182;DP=37;FS=1.344;HRun=9;HaplotypeScore=51.6473;MQ=60;MQ0=0;MQRankSum=0.646;QD=12.64;ReadPosRankSum=-0.149;SB=-244.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:17,19:37:99:507,0,385:60:99:0.528
chr2	11905637	.	T	.	63.09	PASS	DP=36;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:17:17:33.09:60:33
chr2	11905638	.	T	.	.	PASS	END=11905647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr2	11905648	.	C	.	.	PASS	END=11905652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:57:60
chr2	11905653	.	T	.	.	PASS	END=11905669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr2	11905670	.	G	.	.	PASS	END=11905679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr2	11905680	.	G	.	.	PASS	END=11905717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	11905718	.	G	.	.	PASS	END=11905731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	11905732	.	T	.	.	PASS	END=11905779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	11905780	.	A	.	.	PASS	END=11905793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	11905794	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:72:60
chr2	11905795	.	T	.	.	PASS	END=11905806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	11905807	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:61:60
chr2	11905808	.	T	.	.	PASS	END=11905847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr2	11905848	.	C	.	.	PASS	END=11905855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr2	11905856	.	A	.	.	PASS	END=11905872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr2	11905873	.	G	.	.	PASS	END=11905875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	11905876	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:21:60
chr2	11905877	.	G	.	.	PASS	END=11905886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr2	11905887	.	C	.	.	PASS	END=11905890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	11905891	.	G	.	.	PASS	END=11905905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	11905906	.	A	.	.	PASS	END=11905907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr2	11905908	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	11905909	.	C	.	.	PASS	END=11905910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr2	11907838	.	C	.	.	PASS	END=11907841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr2	11907842	.	C	T	608.58	PASS	BaseQRankSum=2.195;DP=45;Dels=0.00;FS=8.860;HRun=1;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=0.246;QD=13.52;ReadPosRankSum=-0.505;SB=-51.40	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:22,22:45:99:639,0,466:60:99:0.500
chr2	11907843	.	C	.	.	PASS	END=11907857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr2	11907858	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:61:60
chr2	11907859	.	A	.	.	PASS	END=11907913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr2	11907914	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:73:60
chr2	11907915	.	T	.	.	PASS	END=11907961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr2	11907962	.	T	.	.	PASS	END=11907990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	11907991	.	A	.	.	PASS	END=11907999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr2	11908000	.	T	.	.	PASS	END=11908008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr2	11908009	.	T	.	.	PASS	END=11908019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	11908020	.	T	.	.	PASS	END=11908033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr2	11908034	.	T	.	.	PASS	END=11908035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr2	11911447	.	C	.	.	PASS	END=11911457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr2	11911458	.	A	.	.	PASS	END=11911470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	11911471	.	T	.	.	PASS	END=11911479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr2	11911480	.	A	.	.	PASS	END=11911496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	11911497	.	G	.	.	PASS	END=11911506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr2	11911507	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:36:60
chr2	11911508	.	C	.	.	PASS	END=11911514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	11911515	.	C	.	.	PASS	END=11911546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr2	11911547	.	C	.	.	PASS	END=11911573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	11911574	.	G	.	.	PASS	END=11911584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr2	11911585	.	G	.	.	PASS	END=11911590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr2	11911591	.	A	.	.	PASS	END=11911598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	11911599	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:72:60
chr2	11911600	.	C	.	.	PASS	END=11911606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	11911607	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:73:60
chr2	11911608	.	C	.	.	PASS	END=11911646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	11911647	.	G	.	.	PASS	END=11911739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	11911740	.	G	.	.	PASS	END=11911754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr2	11911755	.	C	.	.	PASS	END=11911760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr2	11911761	.	C	T	389.91	PASS	BaseQRankSum=2.949;DP=38;Dels=0.00;FS=1.320;HRun=1;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-1.431;QD=10.26;ReadPosRankSum=0.642;SB=-222.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:19,19:38:99:420,0,438:60:99:0.500
chr2	11911762	.	G	.	.	PASS	END=11911780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr2	11911781	.	C	.	.	PASS	END=11911799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	11911800	.	C	.	.	PASS	END=11911813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	11911814	.	T	.	.	PASS	END=11911823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	11911824	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	11911825	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	11911826	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	11911827	.	G	.	.	PASS	END=11911833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	11911834	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr2	11911835	.	G	.	.	PASS	END=11911843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	11911844	.	A	.	.	LowGQX	END=11911856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr2	11913695	.	G	.	.	PASS	END=11913747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	11913748	.	C	.	.	PASS	END=11913826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	11913827	.	A	.	.	PASS	END=11913864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	11913865	.	C	.	.	PASS	END=11913891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr2	11913892	.	C	.	.	PASS	END=11913903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr2	11913904	.	A	.	.	PASS	END=11913922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr2	11916211	.	G	.	.	LowGQX	END=11916266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	11916267	.	G	.	.	LowGQX	END=11916319	GT	./.
chr2	11919594	.	T	.	.	PASS	END=11919714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr2	11919715	.	G	.	.	PASS	END=11919749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	11919750	.	A	.	.	PASS	END=11919772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	11919773	.	T	.	.	PASS	END=11919788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	11919789	.	T	.	.	PASS	END=11919822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	11922276	.	C	.	.	PASS	END=11922279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	11922280	.	G	.	.	PASS	END=11922296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr2	11922297	.	C	.	.	PASS	END=11922300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr2	11922301	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:21:60
chr2	11922302	.	T	.	.	PASS	END=11922312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr2	11922313	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:27:60
chr2	11922314	.	C	.	.	PASS	END=11922325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr2	11922326	.	G	.	.	PASS	END=11922338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr2	11922339	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:60
chr2	11922340	.	A	.	.	PASS	END=11922350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr2	11922351	.	G	.	.	PASS	END=11922383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	11922384	.	G	.	.	PASS	END=11922412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	11922413	.	C	.	.	PASS	END=11922534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	11922535	.	C	.	.	PASS	END=11922573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	11922574	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:69:66:60
chr2	11922575	.	C	.	.	PASS	END=11922593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr2	11922594	.	C	.	.	PASS	END=11922615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:77:60
chr2	11922616	.	C	.	.	PASS	END=11922633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	11922634	.	G	.	.	PASS	END=11922649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr2	11922650	.	T	.	.	PASS	END=11922655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	11922656	.	G	.	.	PASS	END=11922682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr2	11922683	.	C	.	.	PASS	END=11922684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr2	11923904	.	A	.	.	PASS	END=11923938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	11923939	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:68:60
chr2	11923940	.	C	.	.	PASS	END=11923961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr2	11923962	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:60:60
chr2	11923963	.	A	.	.	PASS	END=11923999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:87:60
chr2	11924000	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:72:60
chr2	11924001	.	C	.	.	PASS	END=11924005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	11924006	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:70:60
chr2	11924007	.	A	.	.	PASS	END=11924100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:77:60
chr2	11924961	.	C	.	.	PASS	END=11924974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	11924975	.	G	.	.	PASS	END=11925005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	11925006	.	T	.	.	PASS	END=11925059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	11925060	.	G	.	.	PASS	END=11925114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	11925115	.	G	.	.	PASS	END=11925139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	11925140	.	A	.	.	PASS	END=11925170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	11925171	.	G	.	.	PASS	END=11925194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	11925195	.	C	.	.	PASS	END=11925219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr2	11925220	.	C	.	.	PASS	END=11925241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr2	11925242	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:39:60
chr2	11925243	.	G	.	.	PASS	END=11925253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr2	11927149	.	A	.	.	PASS	END=11927191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:98:60
chr2	11927192	.	T	.	.	PASS	END=11927252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	11927253	.	A	.	.	PASS	END=11927320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	11927321	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:74:75:60
chr2	11927322	.	A	.	.	PASS	END=11927344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	11928458	.	A	.	.	PASS	END=11928546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	11928547	.	C	.	.	PASS	END=11928560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	11928561	.	C	.	.	PASS	END=11928592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr2	11928593	.	A	.	.	PASS	END=11928596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr2	11928597	.	G	.	.	PASS	END=11928600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	11928601	.	A	.	.	PASS	END=11928629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr2	11928630	.	A	.	.	PASS	END=11928633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr2	11931823	.	A	.	.	PASS	END=11931825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:59
chr2	11931826	.	T	.	.	PASS	END=11931833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	11931834	.	T	.	.	PASS	END=11931843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:59
chr2	11931844	.	T	.	.	PASS	END=11931870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	11931871	.	C	.	.	PASS	END=11931905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr2	11931906	.	C	.	.	PASS	END=11931911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:96:60
chr2	11931912	.	G	.	.	PASS	END=11931922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	11931989	.	A	.	.	PASS	END=11932012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	11932013	.	A	.	.	PASS	END=11932046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	11932047	.	T	.	.	PASS	END=11932163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	11932164	.	T	.	.	PASS	END=11932172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	11932173	.	G	T	864.15	PASS	BaseQRankSum=1.877;DP=105;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=9.5219;MQ=60;MQ0=0;MQRankSum=-0.379;QD=8.23;ReadPosRankSum=0.551;SB=-339.79	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:65,40:105:99:894,0,1658:60:99:0.381
chr2	11932174	.	T	.	.	PASS	END=11932183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	11935483	.	A	.	.	PASS	END=11935515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	11935516	.	T	.	.	PASS	END=11935595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	11935596	.	G	.	.	PASS	END=11935629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	11935630	.	C	.	.	PASS	END=11935664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	11942982	.	G	.	.	PASS	END=11943023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	11943024	.	G	.	.	PASS	END=11943032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr2	11943033	.	G	.	.	PASS	END=11943059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr2	11943060	.	T	.	.	PASS	END=11943176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr2	11943177	.	G	.	.	PASS	END=11943201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr2	11943202	.	A	.	.	PASS	END=11943210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	11944498	.	A	.	.	PASS	END=11944559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	11944560	.	G	.	.	PASS	END=11944613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr2	11944614	.	C	.	.	PASS	END=11944660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	11944661	.	A	.	.	PASS	END=11944699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	11944700	.	A	.	.	PASS	END=11944745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	11944746	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:99:60
chr2	11944746	.	TG	T	567.47	PASS	BaseQRankSum=1.137;DP=62;FS=3.390;HRun=5;HaplotypeScore=152.9729;MQ=60;MQ0=0;MQRankSum=-0.349;QD=9.15;ReadPosRankSum=1.818;SB=-49.84	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,20:62:99:607,0,1078:60:99:0.323
chr2	11944747	.	G	.	123.29	PASS	DP=62;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:42:42:93.30:60:93
chr2	11944748	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:99:60
chr2	11945145	.	T	.	.	PASS	END=11945188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	11945189	.	C	.	.	PASS	END=11945235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	11945236	.	G	.	.	PASS	END=11945266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr2	11945267	.	A	.	.	PASS	END=11945319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr2	11945320	.	G	.	.	PASS	END=11945333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	11955163	.	A	.	.	PASS	END=11955217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	11955218	.	G	.	.	PASS	END=11955282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	11955283	.	G	.	.	PASS	END=11955304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	11955305	.	A	.	.	PASS	END=11955359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	11955360	.	T	.	.	PASS	END=11955372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	11955373	.	G	.	.	PASS	END=11955381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr2	11955382	.	C	.	.	PASS	END=11955390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	11955391	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:36:60
chr2	11955392	.	C	.	.	PASS	END=11955401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr2	11955402	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:24:60
chr2	11955403	.	C	.	.	PASS	END=11955416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	11955417	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:45:60
chr2	11959559	.	C	.	.	PASS	END=11959579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	11959580	.	A	.	.	PASS	END=11959605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	11959606	.	A	.	.	PASS	END=11959704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	11959705	.	C	.	.	PASS	END=11959730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	11959731	.	A	.	.	PASS	END=11959749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	11959750	.	A	.	.	PASS	END=11959775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	11960486	.	A	.	.	PASS	END=11960529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	11960530	.	A	.	.	PASS	END=11960653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	11960654	.	A	.	.	PASS	END=11960680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	11960681	.	C	.	.	PASS	END=11960688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	11960689	.	T	.	.	PASS	END=11960691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	11964707	.	G	.	.	PASS	END=11964757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr2	11964758	.	G	.	.	PASS	END=11964839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:260:99:60
chr2	11964840	.	A	.	.	PASS	END=11964920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:279:99:60
chr2	11964921	.	G	.	.	PASS	END=11964968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr2	12858432	.	T	.	.	LowGQX	END=12858705	GT	./.
chr2	12863384	.	A	.	.	LowGQX	END=12863680	GT	./.
chr2	12864754	.	G	.	.	LowGQX	END=12864833	GT	./.
chr2	12864834	.	G	.	.	LowGQX	END=12864950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	12880450	.	A	.	.	LowGQX	END=12880922	GT	./.
chr2	14774102	.	T	.	.	LowGQX	END=14775041	GT	./.
chr2	14775042	.	C	.	.	LowGQX	END=14775043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775044	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	14775045	.	C	.	.	LowGQX	END=14775054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775055	.	C	.	.	LowGQX	.	GT	./.
chr2	14775056	.	A	.	.	LowGQX	END=14775071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775072	.	C	.	.	LowGQX	.	GT	./.
chr2	14775073	.	C	.	.	LowGQX	END=14775078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775079	.	C	.	.	LowGQX	END=14775080	GT	./.
chr2	14775081	.	C	.	.	LowGQX	END=14775083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775084	.	C	.	.	LowGQX	.	GT	./.
chr2	14775085	.	C	.	.	LowGQX	END=14775086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775087	.	G	.	.	LowGQX	.	GT	./.
chr2	14775088	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775089	.	C	.	.	LowGQX	.	GT	./.
chr2	14775090	.	A	.	.	LowGQX	END=14775096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775097	.	T	.	.	LowGQX	.	GT	./.
chr2	14775098	.	C	.	.	LowGQX	END=14775100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775101	.	C	.	.	LowGQX	.	GT	./.
chr2	14775102	.	C	.	.	LowGQX	END=14775106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775107	.	G	.	.	LowGQX	.	GT	./.
chr2	14775108	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775109	.	G	.	.	LowGQX	.	GT	./.
chr2	14775110	.	G	.	.	LowGQX	END=14775114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775115	.	G	.	.	LowGQX	.	GT	./.
chr2	14775116	.	G	.	.	LowGQX	END=14775118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775119	.	C	.	.	LowGQX	.	GT	./.
chr2	14775120	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775121	.	G	.	.	LowGQX	.	GT	./.
chr2	14775122	.	G	.	.	LowGQX	END=14775123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775124	.	T	.	.	LowGQX	.	GT	./.
chr2	14775125	.	G	.	.	LowGQX	END=14775126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775127	.	A	.	.	LowGQX	.	GT	./.
chr2	14775128	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775129	.	C	.	.	LowGQX	.	GT	./.
chr2	14775130	.	C	.	.	LowGQX	END=14775134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775135	.	A	.	.	LowGQX	END=14775136	GT	./.
chr2	14775137	.	C	.	.	LowGQX	END=14775140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775141	.	A	.	.	LowGQX	.	GT	./.
chr2	14775142	.	A	.	.	LowGQX	END=14775146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775147	.	G	.	.	LowGQX	.	GT	./.
chr2	14775148	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775149	.	G	.	.	LowGQX	.	GT	./.
chr2	14775150	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775151	.	C	.	.	LowGQX	END=14775157	GT	./.
chr2	14775158	.	T	.	.	LowGQX	END=14775164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775165	.	A	.	.	LowGQX	END=14775166	GT	./.
chr2	14775167	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775168	.	T	.	.	LowGQX	.	GT	./.
chr2	14775169	.	G	.	.	LowGQX	END=14775171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775172	.	C	.	.	LowGQX	.	GT	./.
chr2	14775173	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775174	.	A	.	.	LowGQX	END=14775176	GT	./.
chr2	14775177	.	G	.	.	LowGQX	END=14775180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775181	.	A	.	.	LowGQX	END=14775182	GT	./.
chr2	14775183	.	A	.	.	LowGQX	END=14775191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775192	.	C	.	.	LowGQX	END=14775209	GT	./.
chr2	14775210	.	C	.	.	LowGQX	END=14775265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	14775266	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	14775267	.	G	.	.	LowGQX	END=14775306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	14775307	.	A	.	.	LowGQX	.	GT	./.
chr2	14775308	.	T	.	.	LowGQX	END=14775323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	14775324	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	14775325	.	C	.	.	LowGQX	END=14775357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	14775358	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	14775359	.	A	.	.	LowGQX	END=14775382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	14775383	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	14775384	.	C	.	.	LowGQX	END=14775397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	14775398	.	C	.	.	LowGQX	END=14775409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	14775410	.	G	.	.	LowGQX	END=14775544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	14775545	.	G	.	.	LowGQX	END=14775768	GT	./.
chr2	14789394	.	G	.	.	LowGQX	END=14789493	GT	./.
chr2	15307121	.	C	.	.	LowGQX	END=15307129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	15307130	.	C	.	.	LowGQX	END=15307131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	15307132	.	A	.	.	LowGQX	END=15307133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	15307134	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr2	15307135	.	T	.	.	LowGQX	END=15307136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	15307137	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr2	15307138	.	T	.	.	LowGQX	END=15307147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr2	15307148	.	A	.	.	LowGQX	END=15307155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	15307156	.	G	.	.	LowGQX	END=15307161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	15307162	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr2	15307163	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr2	15307164	.	G	.	.	LowGQX	END=15307171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	15307172	.	T	.	.	LowGQX	END=15307174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	15307175	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	15307176	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:7:60
chr2	15307177	.	C	.	.	PASS	END=15307180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	15307181	.	G	.	.	PASS	END=15307191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr2	15307192	.	C	.	.	PASS	END=15307200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr2	15307201	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:51:60
chr2	15307202	.	T	.	.	PASS	END=15307217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:96:60
chr2	15307218	.	A	.	.	PASS	END=15307243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	15307244	.	C	.	.	PASS	END=15307322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:84:60
chr2	15307323	.	T	.	.	PASS	END=15307353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	15307354	.	T	.	.	PASS	END=15307393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:93:60
chr2	15307394	.	C	.	.	PASS	END=15307411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	15307412	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:63:60
chr2	15307413	.	G	.	.	PASS	END=15307469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	15307470	.	A	.	.	PASS	END=15307473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	15307474	.	T	.	.	PASS	END=15307479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr2	15307480	.	G	.	.	PASS	END=15307483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr2	15307484	.	T	.	.	PASS	END=15307486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr2	15307487	.	G	.	.	PASS	END=15307493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr2	15307494	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:42:60
chr2	15307495	.	C	.	.	PASS	END=15307498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	15318228	.	A	.	.	LowGQX	END=15318318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15318319	.	T	.	.	LowGQX	.	GT	./.
chr2	15318320	.	A	.	.	LowGQX	END=15318324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	15318325	.	T	.	.	LowGQX	.	GT	./.
chr2	15318326	.	A	.	.	LowGQX	END=15318327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	15319071	.	A	.	.	PASS	END=15319098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:77:60
chr2	15319099	.	C	.	99.01	PASS	DP=105;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:82:105:69.02:60:69
chr2	15319100	.	A	.	.	PASS	END=15319109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	15319110	.	A	.	.	PASS	END=15319138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr2	15319139	.	T	.	.	PASS	END=15319219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr2	15319220	.	C	.	.	PASS	END=15319260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr2	15319261	.	T	.	.	PASS	END=15319281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	15319282	.	A	.	.	PASS	END=15319291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	15326815	.	T	.	.	PASS	END=15326822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr2	15326823	.	G	.	.	PASS	END=15326828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr2	15326829	.	G	.	.	PASS	END=15326834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr2	15326835	.	C	.	.	PASS	END=15326876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	15326877	.	G	.	.	PASS	END=15326969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	15326970	.	C	.	.	PASS	END=15326978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	15326979	.	G	.	.	PASS	END=15326986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:60
chr2	15326987	.	C	.	.	PASS	END=15327006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr2	15327007	.	G	.	.	PASS	END=15327029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr2	15327030	.	G	.	.	PASS	END=15327039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	15327040	.	A	.	.	PASS	END=15327042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	15327043	.	A	.	.	PASS	END=15327044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr2	15327045	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:14:60
chr2	15327046	.	A	.	.	PASS	END=15327055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	15330337	.	A	.	.	PASS	END=15330367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	15330368	.	A	.	.	PASS	END=15330383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	15330384	.	T	.	.	PASS	END=15330531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	15330532	.	A	.	.	PASS	END=15330578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	15358846	.	C	.	.	PASS	END=15358849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	15358850	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:72:60
chr2	15358851	.	C	.	.	PASS	END=15358887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	15358888	.	C	.	.	PASS	END=15358915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	15358916	.	G	.	.	PASS	END=15359012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	15359013	.	G	.	.	PASS	END=15359046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	15359047	.	A	.	.	PASS	END=15359066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	15359067	.	G	.	.	PASS	END=15359083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr2	15359084	.	A	.	.	PASS	END=15359097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr2	15359098	.	G	.	.	PASS	END=15359104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	15359105	.	A	.	.	PASS	END=15359111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr2	15359112	.	G	.	.	PASS	END=15359129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr2	15359130	.	A	.	.	PASS	END=15359140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr2	15359141	.	T	.	.	PASS	END=15359143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	15372495	.	T	.	.	PASS	END=15372523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	15372524	.	G	.	.	PASS	END=15372559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	15372560	.	G	.	.	PASS	END=15372598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr2	15372599	.	T	.	.	PASS	END=15372686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr2	15374618	.	A	.	.	PASS	END=15374628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	15374629	.	G	.	.	PASS	END=15374651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	15374652	.	A	.	.	PASS	END=15374653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr2	15374654	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:60
chr2	15374655	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:48:60
chr2	15374656	.	C	.	.	PASS	END=15374685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	15374686	.	T	.	.	PASS	END=15374692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	15374693	.	A	.	.	PASS	END=15374700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr2	15374701	.	C	.	.	PASS	END=15374721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	15374722	.	G	.	.	PASS	END=15374772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	15374773	.	A	.	.	PASS	END=15374848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	15374849	.	T	.	.	PASS	END=15374875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	15374876	.	A	.	.	PASS	END=15374900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr2	15374901	.	T	.	.	PASS	END=15374922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr2	15378541	.	G	.	.	PASS	END=15378549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	15378550	.	T	.	.	PASS	END=15378553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	15378554	.	G	.	.	PASS	END=15378634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	15378635	.	G	.	.	PASS	END=15378704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr2	15378705	.	C	.	.	PASS	END=15378785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	15378786	.	T	.	.	PASS	END=15378822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	15378822	.	G	GAATT	8134.16	PASS	DP=121;FS=0.000;HRun=0;HaplotypeScore=182.6849;MQ=60;MQ0=0;QD=67.22;SB=-1557.51	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:10,111:121:99:8134,355,0:60:99:0.917
chr2	15378823	.	A	.	.	PASS	END=15378856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	15378857	.	A	.	.	PASS	END=15378861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	15415557	.	T	.	.	LowGQX	END=15415559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr2	15415560	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr2	15415561	.	A	.	.	LowGQX	END=15415574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	15415575	.	G	.	.	PASS	END=15415576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	15415577	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	15415578	.	C	.	.	PASS	END=15415579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	15415580	.	A	.	.	LowGQX	END=15415583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr2	15415584	.	A	.	.	PASS	END=15415593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	15415594	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr2	15415595	.	T	.	.	PASS	END=15415597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	15415598	.	T	.	.	LowGQX	END=15415599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr2	15415600	.	T	.	.	PASS	END=15415606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	15415607	.	C	.	.	LowGQX	END=15415639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr2	15415640	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	15415641	.	A	.	.	PASS	END=15415642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	15415643	.	C	.	.	PASS	END=15415645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr2	15415646	.	C	.	.	PASS	END=15415647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr2	15415648	.	A	.	.	PASS	END=15415656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr2	15415657	.	A	.	.	PASS	END=15415666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr2	15415667	.	G	.	.	PASS	END=15415698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	15415699	.	T	.	.	PASS	END=15415744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	15415745	.	T	.	.	PASS	END=15415788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	15415789	.	G	.	.	PASS	END=15415814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	15415815	.	C	.	.	PASS	END=15415912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	15415913	.	T	.	.	PASS	END=15415939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	15415940	.	G	.	.	PASS	END=15415993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	15416924	.	C	.	.	PASS	END=15416956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	15416957	.	G	.	.	PASS	END=15416969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	15416970	.	C	.	.	PASS	END=15416985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	15416986	.	A	.	.	PASS	END=15417146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	15417147	.	A	.	.	PASS	END=15417246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	15417247	.	A	.	.	PASS	END=15417276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	15427146	.	G	.	.	PASS	END=15427171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	15427172	.	A	.	.	PASS	END=15427189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	15427190	.	T	.	.	PASS	END=15427319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	15427320	.	C	.	.	PASS	END=15427337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	15427338	.	G	.	.	PASS	END=15427358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	15432610	.	T	.	.	PASS	END=15432653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	15432654	.	C	.	.	PASS	END=15432684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	15432685	.	C	.	.	PASS	END=15432826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr2	15432827	.	A	.	.	PASS	END=15432847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	15432848	.	T	.	.	PASS	END=15432871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	15432872	.	T	.	.	PASS	END=15432897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	15432898	.	A	.	.	PASS	END=15432941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr2	15448289	.	A	.	.	PASS	END=15448310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	15448311	.	A	.	.	PASS	END=15448350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr2	15448351	.	G	.	.	PASS	END=15448412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr2	15448413	.	G	.	.	PASS	END=15448446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	15448447	.	G	.	.	PASS	END=15448475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	15448476	.	A	.	.	PASS	END=15448484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	15448485	.	G	.	.	PASS	END=15448499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	15448500	.	T	.	.	PASS	END=15448528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr2	15449193	.	A	.	.	PASS	END=15449267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	15449268	.	A	.	.	PASS	END=15449357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	15449358	.	T	.	.	PASS	END=15449422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr2	15467823	.	A	.	.	PASS	END=15467833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	15467834	.	G	.	.	PASS	END=15467843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	15467844	.	C	.	.	PASS	END=15467851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	15467852	.	G	.	.	PASS	END=15467879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr2	15467880	.	T	.	.	PASS	END=15467985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr2	15467986	.	C	.	.	PASS	END=15467995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr2	15467996	.	T	.	.	PASS	END=15468027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	15468028	.	G	.	.	PASS	END=15468045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	15468272	.	T	.	.	PASS	END=15468314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	15468315	.	G	.	.	PASS	END=15468369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	15468370	.	A	.	.	PASS	END=15468465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	15468466	.	A	.	.	PASS	END=15468487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	15470671	.	A	.	.	PASS	END=15470705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	15470706	.	A	.	.	PASS	END=15470822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr2	15470823	.	T	.	.	PASS	END=15470847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr2	15470848	.	C	T	3099.39	PASS	BaseQRankSum=2.404;DP=226;Dels=0.00;FS=4.957;HRun=0;HaplotypeScore=22.9263;MQ=60;MQ0=0;MQRankSum=-0.800;QD=13.71;ReadPosRankSum=-0.114;SB=-1462.98	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:101,124:226:99:3129,0,2378:60:99:0.551
chr2	15470849	.	A	.	.	PASS	END=15470900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	15470901	.	A	.	.	PASS	END=15470940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	15492065	.	T	.	.	PASS	END=15492091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	15492092	.	C	.	.	PASS	END=15492119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	15492120	.	T	.	.	PASS	END=15492200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	15492201	.	A	.	.	PASS	END=15492256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	15493626	.	C	.	.	PASS	END=15493646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	15493647	.	G	.	.	PASS	END=15493729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr2	15493730	.	G	.	.	PASS	END=15493880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr2	15493881	.	A	G	2380.41	PASS	BaseQRankSum=-0.120;DP=201;Dels=0.00;FS=0.587;HRun=0;HaplotypeScore=13.4571;MQ=60;MQ0=0;MQRankSum=1.442;QD=11.84;ReadPosRankSum=-0.513;SB=-828.36	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:103,98:201:99:2410,0,2759:60:99:0.488
chr2	15493882	.	T	.	.	PASS	END=15493885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr2	15496376	.	C	.	.	PASS	END=15496410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	15496411	.	T	.	.	PASS	END=15496511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:90:60
chr2	15496512	.	C	.	.	PASS	END=15496541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:94:60
chr2	15496542	.	T	.	.	PASS	END=15496564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr2	15496565	.	A	.	.	PASS	END=15496576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	15496577	.	A	.	.	PASS	END=15496588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr2	15496589	.	T	.	.	PASS	END=15496591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr2	15506653	.	C	.	.	PASS	END=15506737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	15506738	.	C	.	.	PASS	END=15506765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	15506766	.	G	.	.	PASS	END=15506780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr2	15506781	.	T	.	.	PASS	END=15506798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr2	15506799	.	C	.	.	PASS	END=15506813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	15506814	.	C	.	.	PASS	END=15506829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	15506830	.	G	.	.	PASS	END=15506854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr2	15506855	.	A	.	.	PASS	END=15506861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	15506862	.	A	.	.	PASS	END=15506866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	15506867	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	15506868	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	15514681	.	A	.	.	PASS	END=15514696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	15514697	.	G	.	.	PASS	END=15514744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	15514745	.	G	.	.	PASS	END=15514792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	15514793	.	T	.	.	PASS	END=15514823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	15514824	.	G	.	.	PASS	END=15514844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr2	15514845	.	C	.	.	PASS	END=15514857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr2	15514858	.	G	.	.	PASS	END=15514895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr2	15519675	.	A	.	.	PASS	END=15519694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr2	15519695	.	C	.	.	PASS	END=15519697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	15519698	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:75:60
chr2	15519699	.	T	.	.	PASS	END=15519713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	15519714	.	G	.	.	PASS	END=15519727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	15519728	.	G	.	.	PASS	END=15519746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	15519747	.	T	.	.	PASS	END=15519855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	15519856	.	C	.	.	PASS	END=15519878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	15519879	.	G	.	.	PASS	END=15519892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	15519893	.	C	.	.	PASS	END=15519906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:85:60
chr2	15519907	.	G	.	.	PASS	END=15519923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr2	15519924	.	C	T	379.16	PASS	BaseQRankSum=2.690;DP=39;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.8404;MQ=60;MQ0=0;MQRankSum=-0.296;QD=9.72;ReadPosRankSum=-0.127;SB=-256.82	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:21,18:39:99:409,0,495:60:99:0.462
chr2	15519925	.	G	.	.	PASS	END=15519926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr2	15519927	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:42:60
chr2	15519928	.	T	.	.	PASS	END=15519972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr2	15519973	.	C	.	.	PASS	END=15519974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr2	15519975	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:39:60
chr2	15519976	.	G	.	.	PASS	END=15519991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr2	15519992	.	G	T	284.75	SB	BaseQRankSum=1.130;DP=27;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8935;MQ=60;MQ0=0;MQRankSum=-0.226;QD=10.55;ReadPosRankSum=0.477;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:17,10:27:99:315,0,476:60:99:0.370
chr2	15519993	.	G	.	.	PASS	END=15520000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr2	15520001	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:39:60
chr2	15520002	.	A	.	.	PASS	END=15520005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr2	15520006	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:39:60
chr2	15523288	.	A	.	.	PASS	END=15523301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	15523302	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:30:60
chr2	15523303	.	A	.	.	PASS	END=15523307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr2	15523307	.	TA	T	453.56	PASS	BaseQRankSum=-0.112;DP=31;FS=0.000;HRun=9;HaplotypeScore=100.1596;MQ=60;MQ0=0;MQRankSum=-1.641;QD=14.63;ReadPosRankSum=-0.157;SB=-192.40	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:12,18:31:99:493,0,253:60:99:0.600
chr2	15523308	.	A	.	57.07	LowGQX	DP=30;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:12:12:27.08:60:27
chr2	15523309	.	A	.	.	PASS	END=15523325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr2	15523326	.	G	.	.	PASS	END=15523337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr2	15523338	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:67:60
chr2	15523339	.	C	.	.	PASS	END=15523360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	15523361	.	A	.	.	PASS	END=15523368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	15523369	.	G	.	.	PASS	END=15523405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	15523406	.	A	.	.	PASS	END=15523488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	15523489	.	A	.	.	PASS	END=15523492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	15533772	.	A	.	.	LowGQX	END=15533871	GT	./.
chr2	15534300	.	A	.	.	PASS	END=15534389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	15534390	.	C	.	.	PASS	END=15534401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr2	15534402	.	G	.	.	PASS	END=15534509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr2	15534510	.	C	.	.	PASS	END=15534524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr2	15536486	.	C	.	.	PASS	END=15536531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	15536532	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:46:60
chr2	15536533	.	T	.	.	PASS	END=15536564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	15536565	.	T	.	.	PASS	END=15536600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	15536601	.	T	.	.	PASS	END=15536650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	15542241	.	A	.	.	PASS	END=15542279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	15542280	.	G	.	.	PASS	END=15542333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	15542334	.	A	.	.	PASS	END=15542351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	15542352	.	C	T	1310.24	PASS	BaseQRankSum=1.950;DP=163;Dels=0.00;FS=1.345;HRun=3;HaplotypeScore=12.4533;MQ=60;MQ0=0;MQRankSum=-0.295;QD=8.04;ReadPosRankSum=0.982;SB=-781.98	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:105,57:163:99:1340,0,2736:60:99:0.352
chr2	15542353	.	G	.	.	PASS	END=15542430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	15542431	.	G	.	.	PASS	END=15542472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	15542473	.	C	.	.	PASS	END=15542476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	15555619	.	T	.	.	PASS	END=15555642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	15555643	.	A	.	.	PASS	END=15555705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	15555706	.	T	.	.	PASS	END=15555894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr2	15557600	.	G	.	.	PASS	END=15557655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	15557656	.	T	.	.	PASS	END=15557718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr2	15557719	.	C	.	.	PASS	END=15557800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr2	15557801	.	C	.	.	PASS	END=15557843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr2	15557844	.	T	.	.	PASS	END=15557876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	15557877	.	A	.	.	PASS	END=15557887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	15564388	.	C	.	.	PASS	END=15564398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr2	15564399	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:45:60
chr2	15564400	.	C	.	.	PASS	END=15564409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr2	15564410	.	A	.	.	PASS	END=15564437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr2	15564438	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:46:60
chr2	15564439	.	C	.	.	PASS	END=15564441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr2	15564442	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:57:60
chr2	15564443	.	C	.	.	PASS	END=15564472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr2	15564473	.	G	.	.	PASS	END=15564526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	15564527	.	A	.	.	PASS	END=15564636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	15564637	.	G	.	.	PASS	END=15564643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	15567784	.	T	.	.	PASS	END=15567821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	15567822	.	G	.	.	PASS	END=15567871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	15567872	.	G	.	.	PASS	END=15567969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	15601274	.	A	.	.	PASS	END=15601287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	15601287	.	A	AT	1429.38	PASS	BaseQRankSum=0.114;DP=97;FS=0.000;HRun=1;HaplotypeScore=136.5272;MQ=60;MQ0=0;MQRankSum=-0.465;QD=14.74;ReadPosRankSum=0.011;SB=-408.52	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:58,39:97:99:1468,0,2115:60:99:0.402
chr2	15601288	.	A	.	.	PASS	END=15601315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	15601316	.	G	.	.	PASS	END=15601375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	15601376	.	A	.	.	PASS	END=15601440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr2	15601441	.	C	T	2459.97	PASS	BaseQRankSum=4.548;DP=200;Dels=0.00;FS=0.542;HRun=0;HaplotypeScore=16.1504;MQ=60;MQ0=0;MQRankSum=-0.800;QD=12.30;ReadPosRankSum=-0.935;SB=-1376.70	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:104,95:200:99:2490,0,2531:60:99:0.477
chr2	15601442	.	A	.	.	PASS	END=15601496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr2	15601497	.	A	.	.	PASS	END=15601512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr2	15601760	.	T	.	.	PASS	END=15601891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	15601892	.	T	.	.	PASS	END=15601906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	15601907	.	T	.	.	PASS	END=15601915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	15601916	.	C	.	.	PASS	END=15601966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	15607402	.	A	.	.	PASS	END=15607426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:83:60
chr2	15607427	.	T	.	.	PASS	END=15607469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:90:60
chr2	15607470	.	G	.	.	PASS	END=15607551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	15607552	.	A	.	.	PASS	END=15607582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	15607737	.	T	.	.	PASS	END=15607761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	15607762	.	C	.	.	PASS	END=15607832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	15607833	.	T	.	.	PASS	END=15607841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	15607842	.	T	C	1562.79	PASS	BaseQRankSum=0.392;DP=123;Dels=0.00;FS=1.534;HRun=2;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=1.009;QD=12.71;ReadPosRankSum=0.443;SB=-709.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:62,61:123:99:1593,0,1683:60:99:0.496
chr2	15607843	.	T	.	.	PASS	END=15607892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	15607893	.	A	.	.	PASS	END=15607929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	15607930	.	T	.	.	PASS	END=15607979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	15608455	.	A	.	.	PASS	END=15608470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	15608471	.	C	.	.	PASS	END=15608479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr2	15608480	.	T	.	.	PASS	END=15608507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr2	15608508	.	G	.	.	PASS	END=15608567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:80:60
chr2	15608568	.	A	.	.	PASS	END=15608658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:79:60
chr2	15608659	.	T	.	.	PASS	END=15608700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	15608701	.	A	.	.	PASS	END=15608708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr2	15613295	.	G	.	.	PASS	END=15613348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	15613349	.	A	.	.	PASS	END=15613410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	15613411	.	C	.	.	PASS	END=15613446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	15613447	.	C	.	.	PASS	END=15613459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	15613460	.	T	.	.	PASS	END=15613492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	15613493	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:75:60
chr2	15613494	.	A	.	.	PASS	END=15613513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr2	15613514	.	T	.	.	PASS	END=15613522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	15614140	.	A	.	.	LowGQX	END=15614143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	15614144	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr2	15614145	.	A	.	.	LowGQX	END=15614155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	15614156	.	C	.	.	LowGQX	END=15614157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	15614158	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr2	15614159	.	C	.	.	LowGQX	END=15614170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	15614171	.	G	.	.	PASS	END=15614185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	15614186	.	C	.	.	PASS	END=15614188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr2	15614189	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr2	15614190	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:9:60
chr2	15614191	.	C	.	.	PASS	END=15614223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	15614224	.	G	.	.	PASS	END=15614254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr2	15614255	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:26:60
chr2	15614256	.	T	.	.	PASS	END=15614267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr2	15614268	.	G	.	.	PASS	END=15614277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr2	15614278	.	T	.	.	PASS	END=15614283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr2	15614284	.	A	.	.	PASS	END=15614306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr2	15614307	.	A	.	.	PASS	END=15614393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr2	15614394	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:60
chr2	15614395	.	T	.	.	PASS	END=15614397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	15614398	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:55:60
chr2	15614399	.	C	.	.	PASS	END=15614403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr2	15614404	.	T	C	693.86	PASS	BaseQRankSum=0.138;DP=43;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=6.8883;MQ=60;MQ0=0;MQRankSum=0.138;QD=16.14;ReadPosRankSum=0.440;SB=-356.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:16,27:43:99:724,0,394:60:99:0.628
chr2	15614405	.	C	.	.	PASS	END=15614411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr2	15614412	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:39:60
chr2	15614413	.	C	.	.	PASS	END=15614420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	15614421	.	A	.	.	PASS	END=15614446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr2	15614447	.	C	.	.	PASS	END=15614461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr2	15614462	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:48:60
chr2	15614463	.	G	.	.	PASS	END=15614483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	15614484	.	G	.	.	PASS	END=15614493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr2	15614494	.	A	.	.	PASS	END=15614499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr2	15615760	.	A	.	.	PASS	END=15615776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	15615777	.	T	.	.	PASS	END=15615807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	15615808	.	T	.	.	PASS	END=15615846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	15615847	.	G	.	.	PASS	END=15615909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr2	15615910	.	A	G	2208.33	PASS	BaseQRankSum=-1.720;DP=187;Dels=0.00;FS=0.562;HRun=1;HaplotypeScore=11.4583;MQ=60;MQ0=0;MQRankSum=-1.101;QD=11.81;ReadPosRankSum=-0.115;SB=-1101.41	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:92,95:187:99:2238,0,2515:60:99:0.508
chr2	15615911	.	G	.	.	PASS	END=15615987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	15615988	.	G	.	.	PASS	END=15616011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	15616012	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:110:99:60
chr2	15616013	.	C	G	1266.09	PASS	BaseQRankSum=2.782;DP=110;Dels=0.00;FS=4.006;HRun=1;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=-1.022;QD=11.51;ReadPosRankSum=-0.630;SB=-434.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:62,48:110:99:1296,0,1346:60:99:0.436
chr2	15616014	.	G	.	.	PASS	END=15616029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	15616030	.	C	T	1226.17	PASS	BaseQRankSum=1.593;DP=107;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=10.4161;MQ=60;MQ0=0;MQRankSum=0.483;QD=11.46;ReadPosRankSum=-1.240;SB=-441.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:62,45:107:99:1256,0,1672:60:99:0.421
chr2	15616031	.	A	.	.	PASS	END=15616055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	15618299	.	T	.	.	PASS	END=15618307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr2	15618308	.	G	.	.	PASS	END=15618336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr2	15618337	.	T	.	.	PASS	END=15618338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	15618339	.	G	A	711.93	PASS	BaseQRankSum=2.363;DP=57;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=1.097;QD=12.49;ReadPosRankSum=0.072;SB=-390.35	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:31,26:57:99:742,0,816:60:99:0.456
chr2	15618340	.	T	.	.	PASS	END=15618370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	15618371	.	C	.	.	PASS	END=15618390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	15618391	.	G	.	.	PASS	END=15618464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	15623439	.	A	.	.	LowGQX	END=15623538	GT	./.
chr2	15628967	.	T	.	.	PASS	END=15628978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	15628979	.	C	.	.	PASS	END=15629038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	15629039	.	C	.	.	PASS	END=15629128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	15629129	.	C	.	.	PASS	END=15629175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	15629176	.	G	.	.	PASS	END=15629197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	15644213	.	T	.	.	PASS	END=15644235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	15644236	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:69:60
chr2	15644237	.	A	.	.	PASS	END=15644298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	15644299	.	G	.	.	PASS	END=15644346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr2	15644347	.	A	.	.	PASS	END=15644388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	15651285	.	A	.	.	PASS	END=15651293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	15651294	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:57:60
chr2	15651295	.	A	.	.	PASS	END=15651322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr2	15651323	.	A	.	.	PASS	END=15651337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	15651338	.	C	.	.	PASS	END=15651367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	15651368	.	G	.	.	PASS	END=15651398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	15651399	.	C	.	.	PASS	END=15651448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	15651449	.	T	.	.	PASS	END=15651498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	15651499	.	A	.	.	PASS	END=15651523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	15651524	.	G	.	.	PASS	END=15651525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	15674616	.	T	.	.	PASS	END=15674619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	15674620	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:48:60
chr2	15674621	.	C	.	.	PASS	END=15674652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr2	15674653	.	A	.	.	PASS	END=15674675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr2	15674676	.	G	.	.	PASS	END=15674685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	15674686	.	T	C	865.93	PASS	BaseQRankSum=0.112;DP=66;Dels=0.00;FS=3.600;HRun=0;HaplotypeScore=7.6178;MQ=60;MQ0=0;MQRankSum=-0.980;QD=13.12;ReadPosRankSum=0.007;SB=-346.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,35:66:99:896,0,820:60:99:0.538
chr2	15674687	.	A	.	.	PASS	END=15674726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	15674727	.	A	.	.	PASS	END=15674816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	15676491	.	A	.	.	PASS	END=15676492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	15676493	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:54:60
chr2	15676494	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:72:60
chr2	15676495	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:48:60
chr2	15676496	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:63:60
chr2	15676497	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:45:60
chr2	15676498	.	A	.	.	PASS	END=15676504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr2	15676505	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:35:60
chr2	15676506	.	A	.	.	PASS	END=15676507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr2	15676508	.	T	.	.	PASS	END=15676511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:75:60
chr2	15676512	.	T	.	.	PASS	END=15676525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr2	15676526	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:69:60
chr2	15676527	.	A	.	.	PASS	END=15676540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr2	15676541	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:63:60
chr2	15676542	.	C	.	.	PASS	END=15676586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr2	15676587	.	A	.	.	PASS	END=15676599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	15676600	.	A	.	.	PASS	END=15676685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	15676686	.	G	A	819.29	PASS	BaseQRankSum=0.116;DP=84;Dels=0.00;FS=6.538;HRun=1;HaplotypeScore=35.9829;MQ=60;MQ0=0;MQRankSum=-1.083;QD=9.75;ReadPosRankSum=2.371;SB=-489.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:41,43:84:99:849,0,824:60:99:0.512
chr2	15676687	.	G	.	.	PASS	END=15676726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:93:60
chr2	15678433	.	T	.	.	LowGQX	END=15678435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15678436	.	T	.	.	LowGQX	.	GT	./.
chr2	15678437	.	T	.	.	LowGQX	END=15678439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15678440	.	G	.	.	LowGQX	.	GT	./.
chr2	15678441	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15678442	.	C	.	.	LowGQX	.	GT	./.
chr2	15678443	.	T	.	.	LowGQX	END=15678454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15678455	.	A	.	.	LowGQX	.	GT	./.
chr2	15678456	.	A	.	.	LowGQX	END=15678464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15678465	.	C	.	.	LowGQX	END=15678466	GT	./.
chr2	15678467	.	A	.	.	LowGQX	END=15678471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15678472	.	C	.	.	LowGQX	END=15678476	GT	./.
chr2	15678477	.	T	.	.	LowGQX	END=15678481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15678482	.	T	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	15678483	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15678484	.	C	.	.	LowGQX	.	GT	./.
chr2	15678485	.	T	.	.	LowGQX	END=15678496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15678497	.	T	.	.	LowGQX	.	GT	./.
chr2	15678498	.	T	.	.	LowGQX	END=15678501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15678502	.	A	.	.	LowGQX	.	GT	./.
chr2	15678503	.	A	.	.	LowGQX	END=15678511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15678512	.	C	.	.	LowGQX	.	GT	./.
chr2	15678513	.	A	.	.	LowGQX	END=15678515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15678516	.	A	.	.	LowGQX	.	GT	./.
chr2	15678517	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15678518	.	C	.	.	LowGQX	.	GT	./.
chr2	15678519	.	T	.	.	LowGQX	END=15678522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15678523	.	T	.	.	LowGQX	.	GT	./.
chr2	15678524	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15678525	.	A	.	.	LowGQX	.	GT	./.
chr2	15678526	.	T	.	.	LowGQX	END=15678528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15678529	.	G	.	.	LowGQX	.	GT	./.
chr2	15678530	.	T	.	.	LowGQX	END=15678532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15679296	.	A	.	.	PASS	END=15679336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	15679337	.	A	.	.	PASS	END=15679389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	15679390	.	C	.	.	PASS	END=15679439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	15679440	.	C	.	.	PASS	END=15679481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	15679482	.	T	.	.	PASS	END=15679494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	15679495	.	A	.	.	PASS	END=15679525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	15679526	.	A	.	.	PASS	END=15679531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	15691566	.	A	.	.	PASS	END=15691606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr2	15691607	.	A	.	.	PASS	END=15691632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	15691633	.	A	.	.	PASS	END=15691672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	15691673	.	C	.	.	PASS	END=15691711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:88:60
chr2	15693484	.	T	.	.	PASS	END=15693500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	15693501	.	C	.	.	PASS	END=15693608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	15693609	.	A	.	.	PASS	END=15693648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	15694134	.	A	.	.	PASS	END=15694164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	15694164	.	T	TA	490.92	PASS	BaseQRankSum=0.953;DP=51;FS=0.000;HRun=1;HaplotypeScore=86.3518;MQ=60;MQ0=0;MQRankSum=0.042;QD=9.63;ReadPosRankSum=0.021;SB=-245.43	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,14:51:99:530,0,1440:60:99:0.286
chr2	15694165	.	T	.	.	PASS	END=15694182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	15694183	.	A	.	.	PASS	END=15694230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:82:60
chr2	15694231	.	C	.	.	PASS	END=15694243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr2	15694244	.	G	.	.	PASS	END=15694274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr2	15694275	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:33:60
chr2	15694276	.	A	.	.	PASS	END=15694291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr2	15694292	.	A	.	.	PASS	END=15694313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	15696856	.	A	.	.	PASS	END=15696885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	15696886	.	T	.	.	PASS	END=15696892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr2	15696893	.	A	.	.	PASS	END=15696909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr2	15696910	.	T	.	.	PASS	END=15696968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	15696969	.	C	.	.	PASS	END=15696994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	15698653	.	C	.	.	PASS	END=15698671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	15698672	.	A	.	.	PASS	END=15698759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	15698760	.	T	.	.	PASS	END=15698809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	15701261	.	C	.	.	PASS	END=15701301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:84:60
chr2	15701302	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:68:72:60
chr2	15701303	.	C	.	.	PASS	END=15701330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	15701331	.	G	.	.	PASS	END=15701381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	15701382	.	T	.	.	PASS	END=15701398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	15701399	.	C	.	.	PASS	END=15701466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:86:60
chr2	15701467	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:62:60
chr2	15701468	.	G	.	.	PASS	END=15701479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr2	15731956	.	A	.	.	LowGQX	END=15732115	GT	./.
chr2	15735245	.	T	.	.	LowGQX	END=15735344	GT	./.
chr2	15735596	.	C	.	.	LowGQX	END=15735695	GT	./.
chr2	15736823	.	T	.	.	LowGQX	END=15736922	GT	./.
chr2	15737447	.	A	.	.	LowGQX	END=15737597	GT	./.
chr2	15739767	.	A	.	.	LowGQX	END=15739866	GT	./.
chr2	15742664	.	A	.	.	LowGQX	END=15742763	GT	./.
chr2	15743308	.	C	.	.	LowGQX	END=15743371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15743372	.	T	.	.	LowGQX	END=15743407	GT	./.
chr2	15743927	.	T	.	.	LowGQX	END=15744026	GT	./.
chr2	15744548	.	T	.	.	LowGQX	END=15744647	GT	./.
chr2	15746063	.	T	.	.	LowGQX	END=15746162	GT	./.
chr2	15746272	.	A	.	.	LowGQX	END=15746390	GT	./.
chr2	15747297	.	A	.	.	LowGQX	END=15747439	GT	./.
chr2	15753329	.	A	.	.	LowGQX	END=15753428	GT	./.
chr2	15757366	.	A	.	.	LowGQX	END=15757376	GT	./.
chr2	15757377	.	G	.	.	LowGQX	END=15757468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15758300	.	T	.	.	LowGQX	END=15758399	GT	./.
chr2	15760320	.	T	.	.	LowGQX	END=15760355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	15760356	.	C	.	.	LowGQX	.	GT	./.
chr2	15760357	.	A	.	.	LowGQX	END=15760386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15760387	.	A	.	.	LowGQX	END=15760388	GT	./.
chr2	15760389	.	A	.	.	LowGQX	END=15760395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15760396	.	A	.	.	LowGQX	.	GT	./.
chr2	15760397	.	T	.	.	LowGQX	END=15760420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15760421	.	A	.	.	LowGQX	.	GT	./.
chr2	15760422	.	G	.	.	LowGQX	END=15760454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15760455	.	G	.	.	LowGQX	END=15760522	GT	./.
chr2	15761165	.	G	.	.	LowGQX	END=15761213	GT	./.
chr2	15761214	.	A	.	.	LowGQX	END=15761222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15761223	.	C	.	.	LowGQX	END=15761224	GT	./.
chr2	15761225	.	G	.	.	LowGQX	END=15761245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15761246	.	T	.	.	LowGQX	.	GT	./.
chr2	15761247	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15761248	.	A	.	.	LowGQX	.	GT	./.
chr2	15761249	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15761250	.	A	.	.	LowGQX	.	GT	./.
chr2	15761251	.	A	.	.	LowGQX	END=15761257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15761258	.	A	.	.	LowGQX	END=15761259	GT	./.
chr2	15761260	.	T	.	.	LowGQX	END=15761261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15761262	.	T	.	.	LowGQX	.	GT	./.
chr2	15761263	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15761264	.	T	.	.	LowGQX	.	GT	./.
chr2	15761265	.	T	.	.	LowGQX	END=15761267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15761268	.	A	.	.	LowGQX	.	GT	./.
chr2	15761269	.	A	.	.	LowGQX	END=15761283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15761284	.	A	.	.	LowGQX	END=15761286	GT	./.
chr2	15761287	.	T	.	.	LowGQX	END=15761289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15761290	.	T	.	.	LowGQX	.	GT	./.
chr2	15761291	.	A	.	.	LowGQX	END=15761292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15761293	.	C	.	.	LowGQX	.	GT	./.
chr2	15761294	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15761295	.	T	.	.	LowGQX	.	GT	./.
chr2	15761296	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15761297	.	C	.	.	LowGQX	END=15761299	GT	./.
chr2	15761300	.	A	.	.	LowGQX	END=15761302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15761303	.	C	.	.	LowGQX	END=15761305	GT	./.
chr2	15761306	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15761307	.	T	.	.	LowGQX	.	GT	./.
chr2	15761308	.	G	.	.	LowGQX	END=15761310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15761311	.	G	.	.	LowGQX	.	GT	./.
chr2	15761312	.	G	.	.	LowGQX	END=15761314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15761315	.	G	.	.	LowGQX	.	GT	./.
chr2	15761316	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15763558	.	A	.	.	LowGQX	END=15763708	GT	./.
chr2	15767174	.	C	.	.	LowGQX	END=15767273	GT	./.
chr2	15768556	.	C	.	.	LowGQX	END=15768609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15768610	.	T	.	.	LowGQX	.	GT	./.
chr2	15768611	.	A	.	.	LowGQX	END=15768655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15768749	.	T	.	.	LowGQX	END=15768840	GT	./.
chr2	15768841	.	C	.	.	LowGQX	END=15768846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15768847	.	T	.	.	LowGQX	.	GT	./.
chr2	15768848	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15768893	.	T	.	.	LowGQX	END=15768903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15768904	.	T	.	.	LowGQX	.	GT	./.
chr2	15768905	.	T	.	.	LowGQX	END=15768943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15768944	.	T	.	.	LowGQX	.	GT	./.
chr2	15768945	.	G	.	.	LowGQX	END=15768991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15768992	.	A	.	.	LowGQX	.	GT	./.
chr2	15769664	.	A	.	.	LowGQX	END=15769823	GT	./.
chr2	15770112	.	A	.	.	LowGQX	END=15770281	GT	./.
chr2	15770898	.	A	.	.	LowGQX	END=15771032	GT	./.
chr2	15840524	.	A	.	.	LowGQX	END=15840659	GT	./.
chr2	15841352	.	G	.	.	LowGQX	END=15841459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15841460	.	A	.	.	LowGQX	END=15841499	GT	./.
chr2	15883580	.	A	.	.	LowGQX	END=15883679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	15884313	.	T	.	.	LowGQX	END=15884412	GT	./.
chr2	16082136	.	A	.	.	PASS	END=16082138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:39:60
chr2	16082139	.	C	.	.	PASS	END=16082140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr2	16082141	.	A	.	72.13	PASS	DP=27;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:18:27:42.13:60:42
chr2	16082142	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:39:60
chr2	16082143	.	C	.	.	PASS	END=16082147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr2	16082148	.	C	.	.	PASS	END=16082149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr2	16082150	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:81:60
chr2	16082151	.	A	.	.	PASS	END=16082153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:48:60
chr2	16082154	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:84:60
chr2	16082155	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:9:60
chr2	16082156	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:36:60
chr2	16082157	.	G	.	.	PASS	END=16082162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr2	16082163	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:57:60
chr2	16082164	.	G	.	.	PASS	END=16082165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr2	16082166	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:48:60
chr2	16082167	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:84:60
chr2	16082168	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:51:60
chr2	16082169	.	C	.	.	PASS	END=16082176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr2	16082177	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:63:60
chr2	16082178	.	G	.	.	PASS	END=16082186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	16082187	.	A	.	.	PASS	END=16082205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	16082206	.	C	.	.	PASS	END=16082231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	16082232	.	A	.	.	PASS	END=16082253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	16082254	.	C	.	.	PASS	END=16082265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	16082266	.	G	.	.	PASS	END=16082405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	16082406	.	C	.	.	PASS	END=16082453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	16082454	.	A	.	.	PASS	END=16082496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	16082497	.	G	.	.	PASS	END=16082515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	16082516	.	C	.	.	PASS	END=16082533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	16082534	.	G	.	.	PASS	END=16082565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr2	16082566	.	A	.	.	PASS	END=16082574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr2	16082575	.	T	.	.	PASS	END=16082576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr2	16082577	.	A	.	.	PASS	END=16082586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr2	16082587	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:57:60
chr2	16082588	.	G	.	.	PASS	END=16082594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr2	16082595	.	G	.	.	PASS	END=16082596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	16082597	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:24:60
chr2	16082598	.	C	.	.	PASS	END=16082617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	16082618	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:60
chr2	16082619	.	T	.	.	PASS	END=16082630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	16082631	.	T	.	.	PASS	END=16082635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	16082636	.	G	.	.	PASS	END=16082638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr2	16082639	.	A	.	.	LowGQX	END=16082655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	16082656	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr2	16082657	.	T	.	.	LowGQX	END=16082667	GT	./.
chr2	16082668	.	G	.	.	LowGQX	END=16082727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	16082728	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	16082729	.	C	.	.	LowGQX	END=16082740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	16082741	.	G	.	.	LowGQX	END=16082816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr2	16082817	.	A	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr2	16082818	.	G	.	.	LowGQX	END=16082854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	16082855	.	G	.	.	LowGQX	END=16082869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	16082870	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr2	16082871	.	G	.	.	LowGQX	END=16082885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	16082886	.	G	.	.	LowGQX	END=16082896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	16082897	.	G	.	.	LowGQX	END=16082902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	16082903	.	A	.	.	LowGQX	END=16082904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:60
chr2	16082905	.	G	.	.	LowGQX	END=16082928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	16082929	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr2	16082930	.	C	.	.	LowGQX	END=16082931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	16082932	.	A	.	.	LowGQX	END=16082935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr2	16082936	.	G	.	.	LowGQX	END=16082970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr2	16082971	.	A	.	.	LowGQX	END=16082972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:15:60
chr2	16082973	.	T	.	.	LowGQX	END=16082981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:60
chr2	16082982	.	G	.	.	LowGQX	END=16083027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr2	16085554	.	T	.	.	PASS	END=16085579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr2	16085580	.	T	.	.	PASS	END=16085589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr2	16085590	.	A	.	.	PASS	END=16085596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr2	16085597	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:57:60
chr2	16085598	.	T	.	.	PASS	END=16085616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr2	16085617	.	G	.	.	PASS	END=16085663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	16085664	.	C	.	.	PASS	END=16085673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	16085674	.	A	.	.	PASS	END=16085712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	16085713	.	T	.	.	PASS	END=16085867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	16085868	.	G	.	.	PASS	END=16085885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	16085886	.	G	.	.	PASS	END=16085897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	16085898	.	G	.	.	PASS	END=16085930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr2	16085931	.	C	.	.	PASS	END=16085964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:263:99:60
chr2	16085965	.	G	.	.	PASS	END=16086051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:316:99:60
chr2	16086052	.	G	.	.	PASS	END=16086114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:262:99:60
chr2	16086115	.	C	.	.	PASS	END=16086128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	16086129	.	C	.	.	PASS	END=16086175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	16086176	.	A	.	.	PASS	END=16086212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	16086213	.	T	.	.	PASS	END=16086233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	16086234	.	T	.	.	PASS	END=16086270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	16734186	.	T	.	.	LowGQX	END=16734225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	16734226	.	T	.	.	LowGQX	END=16734285	GT	./.
chr2	16736323	.	G	.	.	LowGQX	END=16736422	GT	./.
chr2	16740726	.	A	.	.	LowGQX	END=16740739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	16740740	.	T	.	.	LowGQX	.	GT	./.
chr2	16740741	.	G	.	.	LowGQX	END=16740749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	16740750	.	A	.	.	LowGQX	END=16740856	GT	./.
chr2	16742248	.	T	.	.	LowGQX	END=16742347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	16742427	.	A	.	.	LowGQX	END=16742547	GT	./.
chr2	16742713	.	C	.	.	LowGQX	END=16742812	GT	./.
chr2	16743271	.	A	.	.	LowGQX	END=16743411	GT	./.
chr2	16745255	.	A	.	.	LowGQX	END=16745364	GT	./.
chr2	16746912	.	A	.	.	LowGQX	END=16747019	GT	./.
chr2	16747020	.	T	.	.	LowGQX	END=16747025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	16747026	.	G	.	.	LowGQX	.	GT	./.
chr2	16747027	.	G	.	.	LowGQX	END=16747031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	16747032	.	G	.	.	LowGQX	.	GT	./.
chr2	16747033	.	C	.	.	LowGQX	END=16747036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	16747037	.	T	.	.	LowGQX	.	GT	./.
chr2	16769303	.	A	.	.	LowGQX	END=16769339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	16769340	.	T	.	.	LowGQX	.	GT	./.
chr2	16769341	.	G	.	.	LowGQX	END=16769369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	16769370	.	T	.	.	LowGQX	END=16769402	GT	./.
chr2	17692069	.	A	.	.	LowGQX	END=17692224	GT	./.
chr2	17695217	.	T	.	.	LowGQX	END=17695369	GT	./.
chr2	17696434	.	A	.	.	LowGQX	END=17698211	GT	./.
chr2	17698212	.	A	.	.	LowGQX	END=17698286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698287	.	T	.	.	LowGQX	END=17698288	GT	./.
chr2	17698289	.	T	.	.	LowGQX	END=17698311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698312	.	T	.	.	LowGQX	.	GT	./.
chr2	17698313	.	T	.	.	LowGQX	END=17698347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698348	.	A	.	.	LowGQX	END=17698349	GT	./.
chr2	17698350	.	C	.	.	LowGQX	END=17698353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698354	.	C	.	.	LowGQX	.	GT	./.
chr2	17698355	.	T	.	.	LowGQX	END=17698356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698357	.	G	.	.	LowGQX	.	GT	./.
chr2	17698358	.	C	.	.	LowGQX	END=17698362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698363	.	A	.	.	LowGQX	END=17698621	GT	./.
chr2	17698622	.	C	.	.	LowGQX	END=17698627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698628	.	T	.	.	LowGQX	.	GT	./.
chr2	17698629	.	T	.	.	LowGQX	END=17698632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698633	.	G	.	.	LowGQX	.	GT	./.
chr2	17698634	.	T	.	.	LowGQX	END=17698642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698643	.	C	.	.	LowGQX	.	GT	./.
chr2	17698644	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698645	.	G	.	.	LowGQX	END=17698648	GT	./.
chr2	17698649	.	A	.	.	LowGQX	END=17698651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698652	.	T	.	.	LowGQX	.	GT	./.
chr2	17698653	.	C	.	.	LowGQX	END=17698654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698655	.	T	.	.	LowGQX	.	GT	./.
chr2	17698656	.	T	.	.	LowGQX	END=17698660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698661	.	T	.	.	LowGQX	.	GT	./.
chr2	17698662	.	T	.	.	LowGQX	END=17698663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698664	.	C	.	.	LowGQX	.	GT	./.
chr2	17698665	.	A	.	.	LowGQX	END=17698670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698671	.	T	.	.	LowGQX	.	GT	./.
chr2	17698672	.	T	.	.	LowGQX	END=17698677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698678	.	A	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr2	17698679	.	C	.	.	LowGQX	END=17698687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698688	.	G	.	.	LowGQX	.	GT	./.
chr2	17698689	.	G	.	.	LowGQX	END=17698691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698692	.	A	.	.	LowGQX	.	GT	./.
chr2	17698693	.	G	.	.	LowGQX	END=17698698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698699	.	T	.	.	LowGQX	.	GT	./.
chr2	17698700	.	T	.	.	LowGQX	END=17698710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698711	.	G	.	.	LowGQX	.	GT	./.
chr2	17698712	.	G	.	.	LowGQX	END=17698729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698730	.	T	.	.	LowGQX	.	GT	./.
chr2	17698731	.	C	.	.	LowGQX	END=17698751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698752	.	G	.	.	LowGQX	.	GT	./.
chr2	17698753	.	T	.	.	LowGQX	END=17698772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17698773	.	C	.	.	LowGQX	END=17699684	GT	./.
chr2	17773340	.	G	.	.	LowGQX	END=17773420	GT	./.
chr2	17773421	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17773422	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	17773423	.	A	.	.	LowGQX	END=17773428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17773429	.	T	.	.	LowGQX	END=17773430	GT	./.
chr2	17773431	.	G	.	.	LowGQX	END=17773432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17773433	.	A	.	.	LowGQX	.	GT	./.
chr2	17773434	.	C	.	.	LowGQX	END=17773448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17773449	.	G	.	.	LowGQX	END=17773450	GT	./.
chr2	17773451	.	A	.	.	LowGQX	END=17773453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17773454	.	G	.	.	LowGQX	.	GT	./.
chr2	17773455	.	T	.	.	LowGQX	END=17773456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17773457	.	C	.	.	LowGQX	.	GT	./.
chr2	17773458	.	A	.	.	LowGQX	END=17773459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17773460	.	G	.	.	LowGQX	END=17773461	GT	./.
chr2	17773462	.	G	.	.	LowGQX	END=17773463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17773464	.	G	.	.	LowGQX	.	GT	./.
chr2	17773465	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17773466	.	G	.	.	LowGQX	.	GT	./.
chr2	17773467	.	G	.	.	LowGQX	END=17773478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17773479	.	G	.	.	LowGQX	END=17773480	GT	./.
chr2	17773481	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17773482	.	A	.	.	LowGQX	.	GT	./.
chr2	17773483	.	T	.	.	LowGQX	END=17773485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17773486	.	C	.	.	LowGQX	.	GT	./.
chr2	17773487	.	A	.	.	LowGQX	END=17773492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17773493	.	T	.	.	LowGQX	.	GT	./.
chr2	17773494	.	C	.	.	LowGQX	END=17773502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17773503	.	G	.	.	LowGQX	.	GT	./.
chr2	17773504	.	G	.	.	LowGQX	END=17773505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17830675	.	A	.	.	LowGQX	END=17830811	GT	./.
chr2	17830812	.	A	.	.	LowGQX	END=17830894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17836462	.	A	.	.	LowGQX	END=17836663	GT	./.
chr2	17846764	.	A	.	.	LowGQX	END=17846882	GT	./.
chr2	17847685	.	A	.	.	LowGQX	END=17847786	GT	./.
chr2	17851667	.	G	.	.	LowGQX	END=17851691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17851692	.	T	.	.	LowGQX	.	GT	./.
chr2	17851693	.	G	.	.	LowGQX	END=17851723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17851724	.	G	.	.	LowGQX	.	GT	./.
chr2	17851725	.	G	.	.	LowGQX	END=17851734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17851735	.	G	.	.	LowGQX	END=17851736	GT	./.
chr2	17851737	.	T	.	.	LowGQX	END=17851741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17851742	.	C	.	.	LowGQX	END=17851743	GT	./.
chr2	17851744	.	C	.	.	LowGQX	END=17851749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17851750	.	A	.	.	LowGQX	END=17851835	GT	./.
chr2	17851836	.	G	.	.	LowGQX	END=17851843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17851844	.	T	.	.	LowGQX	.	GT	./.
chr2	17860124	.	A	.	.	LowGQX	END=17860146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17860147	.	C	.	.	LowGQX	END=17860183	GT	./.
chr2	17860184	.	T	.	.	LowGQX	END=17860205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17860206	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	17860207	.	T	.	.	LowGQX	END=17860233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17864903	.	A	.	.	LowGQX	END=17864993	GT	./.
chr2	17864994	.	C	.	.	LowGQX	END=17864995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17864996	.	G	.	.	LowGQX	.	GT	./.
chr2	17864997	.	A	.	.	LowGQX	END=17865082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17876387	.	G	.	.	LowGQX	END=17876566	GT	./.
chr2	17877554	.	A	.	.	LowGQX	END=17877733	GT	./.
chr2	17881473	.	A	.	.	LowGQX	END=17881647	GT	./.
chr2	17883034	.	A	.	.	LowGQX	END=17883186	GT	./.
chr2	17884422	.	A	.	.	LowGQX	END=17884601	GT	./.
chr2	17888484	.	A	.	.	LowGQX	END=17888633	GT	./.
chr2	17888634	.	C	.	.	LowGQX	END=17888648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17889904	.	A	.	.	LowGQX	END=17890022	GT	./.
chr2	17894714	.	G	.	.	LowGQX	END=17894753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17894754	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	17894755	.	C	.	.	LowGQX	END=17894788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17894789	.	C	.	.	LowGQX	END=17894873	GT	./.
chr2	17896056	.	G	.	.	LowGQX	END=17896253	GT	./.
chr2	17896254	.	C	.	.	LowGQX	END=17896293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17896294	.	C	.	.	LowGQX	.	GT	./.
chr2	17896295	.	C	.	.	LowGQX	END=17896299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17896300	.	C	.	.	LowGQX	.	GT	./.
chr2	17896301	.	A	.	.	LowGQX	END=17896331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17896332	.	C	.	.	LowGQX	.	GT	./.
chr2	17896333	.	C	.	.	LowGQX	END=17896348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17896349	.	A	.	.	LowGQX	.	GT	./.
chr2	17896350	.	T	.	.	LowGQX	END=17896351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17896352	.	A	.	.	LowGQX	.	GT	./.
chr2	17896353	.	C	.	.	LowGQX	END=17896372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17896373	.	T	.	.	LowGQX	END=17896374	GT	./.
chr2	17896375	.	T	.	.	LowGQX	END=17896386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17896387	.	A	.	.	LowGQX	.	GT	./.
chr2	17896388	.	A	.	.	LowGQX	END=17896390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17896391	.	T	.	.	LowGQX	END=17896393	GT	./.
chr2	17896394	.	T	.	.	LowGQX	END=17896395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17897351	.	A	.	.	LowGQX	END=17897550	GT	./.
chr2	17898006	.	A	.	.	LowGQX	END=17898174	GT	./.
chr2	17898350	.	C	.	.	LowGQX	END=17898449	GT	./.
chr2	17899342	.	A	.	.	LowGQX	END=17899492	GT	./.
chr2	17902205	.	A	.	.	LowGQX	END=17902307	GT	./.
chr2	17902407	.	A	.	.	LowGQX	END=17902530	GT	./.
chr2	17906472	.	A	.	.	LowGQX	END=17906627	GT	./.
chr2	17907647	.	G	.	.	LowGQX	END=17907746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17912273	.	T	.	.	LowGQX	END=17912420	GT	./.
chr2	17912421	.	C	.	.	LowGQX	END=17912425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	17913006	.	A	.	.	LowGQX	END=17913146	GT	./.
chr2	17919486	.	A	.	.	LowGQX	END=17919595	GT	./.
chr2	17921940	.	G	.	.	LowGQX	END=17922100	GT	./.
chr2	17922877	.	A	.	.	LowGQX	END=17922998	GT	./.
chr2	17927092	.	A	.	.	LowGQX	END=17927215	GT	./.
chr2	17941209	.	G	.	.	LowGQX	END=17941373	GT	./.
chr2	17942661	.	A	.	.	LowGQX	END=17942851	GT	./.
chr2	17946162	.	A	.	.	LowGQX	END=17946361	GT	./.
chr2	17947844	.	A	.	.	LowGQX	END=17947958	GT	./.
chr2	17949992	.	C	.	.	LowGQX	END=17950091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17952305	.	A	.	.	LowGQX	END=17952404	GT	./.
chr2	17952459	.	A	.	.	LowGQX	END=17952558	GT	./.
chr2	17953899	.	A	.	.	LowGQX	END=17954053	GT	./.
chr2	17954332	.	A	.	.	LowGQX	END=17954379	GT	./.
chr2	17954380	.	A	.	.	LowGQX	END=17954431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17954477	.	T	.	.	LowGQX	END=17954536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17954537	.	T	.	.	LowGQX	END=17954576	GT	./.
chr2	17955536	.	A	.	.	LowGQX	END=17955670	GT	./.
chr2	17959250	.	A	.	.	LowGQX	END=17959300	GT	./.
chr2	17959301	.	A	.	.	LowGQX	END=17959318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17959319	.	G	.	.	LowGQX	.	GT	./.
chr2	17959320	.	G	.	.	LowGQX	END=17959349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17961243	.	A	.	.	LowGQX	END=17961293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17961294	.	A	.	.	LowGQX	END=17961422	GT	./.
chr2	17961886	.	A	.	.	LowGQX	END=17963208	GT	./.
chr2	17997784	.	G	.	.	LowGQX	END=17997789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17997790	.	A	.	.	LowGQX	.	GT	./.
chr2	17997791	.	C	.	.	LowGQX	END=17997801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17997802	.	A	.	.	LowGQX	.	GT	./.
chr2	17997803	.	G	.	.	LowGQX	END=17997831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17997832	.	G	.	.	LowGQX	END=17997833	GT	./.
chr2	17997834	.	T	.	.	LowGQX	END=17997843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17997844	.	G	.	.	LowGQX	.	GT	./.
chr2	17997845	.	C	.	.	LowGQX	END=17997885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17997886	.	G	.	.	LowGQX	.	GT	./.
chr2	17997887	.	G	.	.	LowGQX	END=17997889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17997890	.	C	.	.	LowGQX	END=17997891	GT	./.
chr2	17997892	.	T	.	.	LowGQX	END=17997896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17997897	.	C	.	.	LowGQX	.	GT	./.
chr2	17997898	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17997899	.	G	.	.	LowGQX	.	GT	./.
chr2	17997900	.	A	.	.	LowGQX	END=17997906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17997907	.	C	.	.	LowGQX	END=17998053	GT	./.
chr2	17998054	.	T	.	.	LowGQX	END=17998094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17998095	.	C	T	9.30	LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:30.11:39,0,30:60:9:0.667
chr2	17998096	.	A	.	.	LowGQX	END=17998199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	17998200	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	17998201	.	C	.	.	LowGQX	END=17998231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	17998232	.	T	.	.	LowGQX	END=17998369	GT	./.
chr2	18112274	.	C	.	.	PASS	END=18112371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	18112372	.	C	.	.	PASS	END=18112432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr2	18112433	.	T	.	.	PASS	END=18112470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr2	18112471	.	G	.	.	PASS	END=18112472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:288:99:60
chr2	18112473	.	G	A	9551.80	PASS	DP=302;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=15.3509;MQ=60;MQ0=0;QD=31.63;SB=-3993.38	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,302:302:99:9552,725,0:60:99:1.000
chr2	18112474	.	T	.	.	PASS	END=18112618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:60
chr2	18112619	.	C	.	.	PASS	END=18112835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr2	18112836	.	C	.	.	PASS	END=18113215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	18113216	.	G	.	.	PASS	END=18113365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	18113366	.	C	.	.	PASS	END=18113427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr2	18113428	.	C	.	.	PASS	END=18113507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr2	18113508	.	G	A	2551.51	PASS	BaseQRankSum=2.774;DP=244;Dels=0.00;FS=0.514;HRun=2;HaplotypeScore=20.9905;MQ=60;MQ0=0;MQRankSum=-1.827;QD=10.46;ReadPosRankSum=0.005;SB=-1019.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:142,100:244:99:2582,0,3514:60:99:0.413
chr2	18113509	.	T	.	.	PASS	END=18113611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr2	18113612	.	A	.	.	PASS	END=18113622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	18113623	.	A	G	2285.30	PASS	BaseQRankSum=2.239;DP=190;Dels=0.00;FS=11.921;HRun=0;HaplotypeScore=18.4124;MQ=60;MQ0=0;MQRankSum=-0.925;QD=12.03;ReadPosRankSum=1.474;SB=-1213.74	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:96,94:190:99:2315,0,2292:60:99:0.495
chr2	18113624	.	C	.	.	PASS	END=18113720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr2	18113721	.	C	.	.	PASS	END=18113752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	18113753	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:112:99:60
chr2	18736455	.	T	.	.	LowGQX	END=18737076	GT	./.
chr2	18741433	.	C	.	.	LowGQX	END=18741842	GT	./.
chr2	18745060	.	C	.	.	PASS	END=18745085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	18745086	.	G	.	.	PASS	END=18745102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr2	18745103	.	A	.	.	PASS	END=18745236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr2	18745237	.	C	.	.	PASS	END=18745340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr2	18745341	.	C	.	.	PASS	END=18745387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr2	18757438	.	C	.	.	PASS	END=18757475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	18757476	.	A	.	.	PASS	END=18757500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr2	18757501	.	G	C	2750.76	PASS	BaseQRankSum=0.828;DP=213;Dels=0.00;FS=4.104;HRun=1;HaplotypeScore=15.1507;MQ=60;MQ0=0;MQRankSum=1.986;QD=12.91;ReadPosRankSum=0.162;SB=-1422.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:95,114:213:99:2781,0,2308:60:99:0.545
chr2	18757502	.	A	.	.	PASS	END=18757605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr2	18757606	.	T	.	.	PASS	END=18757636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	18758037	.	A	.	.	PASS	END=18758131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	18758132	.	C	.	.	PASS	END=18758156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	18758157	.	T	.	.	PASS	END=18758175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr2	18758176	.	G	.	.	PASS	END=18758200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr2	18758201	.	A	.	.	PASS	END=18758216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr2	18764132	.	A	.	.	PASS	END=18764178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	18764179	.	G	.	.	PASS	END=18764231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	18764232	.	T	.	.	PASS	END=18764254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	18764255	.	C	.	.	PASS	END=18764263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	18764264	.	C	.	.	PASS	END=18764265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	18765111	.	G	.	.	PASS	END=18765122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	18765123	.	A	.	.	PASS	END=18765143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr2	18765144	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:24:60
chr2	18765145	.	A	.	.	PASS	END=18765156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	18765157	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:33:60
chr2	18765158	.	T	.	.	PASS	END=18765173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr2	18765174	.	C	.	.	PASS	END=18765179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr2	18765180	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:62:60
chr2	18765181	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:87:60
chr2	18765182	.	G	.	.	PASS	END=18765210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	18765219	.	T	.	.	PASS	END=18765245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	18765246	.	G	.	.	PASS	END=18765272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	18765273	.	T	.	.	PASS	END=18765287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	18765288	.	G	.	.	PASS	END=18765315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	18765316	.	C	.	.	PASS	END=18765341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr2	18765342	.	C	.	.	PASS	END=18765386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr2	18765387	.	G	.	.	PASS	END=18765491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr2	18765492	.	A	.	.	PASS	END=18765523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr2	18765771	.	C	.	.	PASS	END=18765820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	18765821	.	A	.	.	PASS	END=18765856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr2	18765857	.	C	.	.	PASS	END=18765952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	18765953	.	T	.	.	PASS	END=18766090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	18766091	.	C	.	.	PASS	END=18766111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	18766112	.	A	.	.	PASS	END=18766155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	18766156	.	G	.	.	PASS	END=18766189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	18766190	.	C	.	.	PASS	END=18766209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	18766210	.	G	.	.	PASS	END=18766246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr2	18766357	.	T	.	.	PASS	END=18766370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	18766371	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:36:60
chr2	18766372	.	G	.	.	LowGQX	END=18766374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	18766375	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	18766376	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr2	18766377	.	T	.	.	PASS	END=18766379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	18766380	.	G	.	.	LowGQX	END=18766381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr2	18766382	.	G	.	.	LowGQX	END=18766385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	18766386	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr2	18766387	.	G	.	.	LowGQX	END=18766402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr2	18766403	.	C	.	.	LowGQX	END=18766404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	18766405	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr2	18766406	.	C	.	.	LowGQX	END=18766408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	18766409	.	T	.	.	LowGQX	END=18766410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	18766411	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr2	18766412	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr2	18766413	.	A	.	.	LowGQX	END=18766415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	18766416	.	T	.	.	LowGQX	END=18766433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	18766434	.	A	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr2	18766435	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr2	18766436	.	A	.	.	LowGQX	END=18766439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	18766440	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr2	18766441	.	G	.	.	LowGQX	END=18766442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr2	18766443	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr2	18766444	.	T	.	.	LowGQX	END=18766445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	18766446	.	C	.	.	LowGQX	END=18766447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	18766448	.	T	.	.	LowGQX	END=18766449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	18766450	.	C	.	.	LowGQX	END=18766452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	18766453	.	T	.	.	LowGQX	END=18766455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	18766456	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:1:60
chr2	18767513	.	C	.	.	PASS	END=18767548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	18767549	.	C	.	.	PASS	END=18767587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	18767588	.	T	.	.	PASS	END=18767625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	18767626	.	T	.	.	PASS	END=18767659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	18768208	.	C	.	.	PASS	END=18768242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr2	18768243	.	G	.	.	PASS	END=18768269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr2	18768270	.	G	.	.	PASS	END=18768326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:252:99:60
chr2	18768327	.	T	.	.	PASS	END=18768425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:259:99:60
chr2	18768426	.	A	.	.	PASS	END=18768441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr2	18768764	.	C	.	.	PASS	END=18768849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:95:60
chr2	18768850	.	A	G	471.25	PASS	BaseQRankSum=-1.301;DP=58;Dels=0.00;FS=2.512;HRun=2;HaplotypeScore=10.5108;MQ=60;MQ0=0;MQRankSum=0.897;QD=8.12;ReadPosRankSum=-0.913;SB=-217.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,24:58:99:501,0,823:60:99:0.421
chr2	18768851	.	G	.	.	PASS	END=18768863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	18770670	.	C	.	.	PASS	END=18770682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	18770683	.	C	.	.	PASS	END=18770745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	18770746	.	T	.	.	PASS	END=18770795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	18770796	.	C	.	.	PASS	END=18770807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	19552034	.	A	.	.	LowGQX	END=19552103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	19552104	.	T	.	.	LowGQX	END=19552173	GT	./.
chr2	19552900	.	A	.	.	LowGQX	END=19552916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	19552917	.	T	.	.	LowGQX	END=19552944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	19552945	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr2	19552946	.	G	.	.	LowGQX	END=19552954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr2	19552955	.	G	.	.	PASS	END=19552967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	19552968	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr2	19552969	.	C	.	.	PASS	END=19552991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	19552992	.	A	.	.	PASS	END=19553000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr2	19553001	.	T	.	.	PASS	END=19553007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	19553008	.	A	.	.	PASS	END=19553018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr2	19553019	.	T	.	.	PASS	END=19553025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr2	19553026	.	C	.	.	PASS	END=19553037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	19553038	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:0:60
chr2	19553039	.	G	.	.	PASS	END=19553058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	19553059	.	T	.	.	PASS	END=19553068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr2	19553069	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr2	19553070	.	C	.	.	PASS	END=19553074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	19553075	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr2	19553076	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chr2	19553077	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr2	19553078	.	T	.	.	PASS	END=19553094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	19553095	.	G	.	.	PASS	END=19553097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr2	19553098	.	A	.	.	PASS	END=19553101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:30:60
chr2	19553102	.	C	.	.	PASS	END=19553105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr2	19553106	.	G	.	.	PASS	END=19553115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	19553116	.	G	.	.	PASS	END=19553143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr2	19553144	.	G	.	.	PASS	END=19553153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	19553154	.	T	.	.	PASS	END=19553162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr2	19553163	.	C	.	.	PASS	END=19553178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr2	19553179	.	C	.	.	PASS	END=19553192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr2	19553193	.	G	.	.	PASS	END=19553204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	19553205	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:45:60
chr2	19553206	.	T	.	.	PASS	END=19553207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr2	19553208	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:18:60
chr2	19553209	.	C	.	.	PASS	END=19553222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr2	19553223	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:26:60
chr2	19553224	.	G	.	.	PASS	END=19553242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr2	19553243	.	A	.	.	PASS	END=19553261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	19553262	.	A	.	.	PASS	END=19553263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr2	19553264	.	C	.	.	PASS	END=19553270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	19553271	.	T	.	.	PASS	END=19553275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chr2	19553276	.	T	.	.	PASS	END=19553278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:36:60
chr2	19553279	.	A	.	.	PASS	END=19553298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr2	19553299	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:60
chr2	19553300	.	A	.	.	PASS	END=19553312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr2	19553313	.	T	.	.	PASS	END=19553314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr2	19553315	.	G	.	.	PASS	END=19553336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	19553337	.	G	.	.	PASS	END=19553341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	19553342	.	C	.	.	PASS	END=19553343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	19553344	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:60
chr2	19553345	.	G	.	.	PASS	END=19553378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	19553379	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:60
chr2	19553380	.	G	.	.	PASS	END=19553403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	19553404	.	A	.	.	PASS	END=19553414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	19553415	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	19553416	.	G	.	.	PASS	END=19553418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	19553419	.	C	.	.	LowGQX	END=19553421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr2	19553422	.	C	.	.	LowGQX	END=19553424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	19553425	.	G	.	.	LowGQX	END=19553429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr2	19553430	.	G	.	.	LowGQX	END=19553431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	19553432	.	G	.	.	LowGQX	END=19553433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	19553434	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr2	19553435	.	G	.	.	LowGQX	END=19553438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr2	19553439	.	C	.	.	LowGQX	END=19553444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	19553445	.	A	.	.	LowGQX	END=19553447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	19553448	.	T	.	.	LowGQX	END=19553458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	19553459	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:60
chr2	19553460	.	T	.	.	LowGQX	END=19553477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	19553478	.	A	.	.	LowGQX	END=19553513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	19553514	.	A	G	4.59	LowGQX;LowQD	BaseQRankSum=0.000;DP=6;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.720;QD=0.76;ReadPosRankSum=0.000;SB=-27.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:4,2:6:32.73:33,0,111:60:5:0.333
chr2	19553515	.	G	.	.	LowGQX	END=19553547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr2	19553548	.	G	.	.	LowGQX	END=19553568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr2	20096746	.	T	.	.	LowGQX	END=20096925	GT	./.
chr2	20097628	.	A	.	.	LowGQX	END=20097798	GT	./.
chr2	20100787	.	A	.	.	LowGQX	END=20100841	GT	./.
chr2	20100842	.	C	.	.	LowGQX	END=20100886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20101465	.	A	.	.	LowGQX	END=20101617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20113268	.	C	.	.	PASS	END=20113272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	20113273	.	A	.	.	PASS	END=20113298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr2	20113299	.	A	.	.	PASS	END=20113322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:83:60
chr2	20113323	.	C	.	.	PASS	END=20113324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:66:60
chr2	20113325	.	C	.	.	PASS	END=20113371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	20113372	.	G	.	.	PASS	END=20113409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	20113410	.	A	.	.	PASS	END=20113446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:59
chr2	20113447	.	A	.	.	PASS	END=20113473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:59
chr2	20113474	.	A	.	.	PASS	END=20113480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr2	20113481	.	G	.	.	PASS	END=20113520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	20113747	.	T	.	.	PASS	END=20113761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr2	20113762	.	A	.	.	PASS	END=20113800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr2	20113801	.	T	.	.	PASS	END=20113806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr2	20113807	.	A	.	.	PASS	END=20113834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	20113835	.	C	.	.	PASS	END=20113891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	20113892	.	G	.	.	PASS	END=20113952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	20113953	.	G	.	.	PASS	END=20113983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	20113984	.	A	.	.	PASS	END=20113999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr2	20114000	.	C	.	.	PASS	END=20114004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr2	20114005	.	G	.	.	PASS	END=20114013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr2	20114014	.	T	.	.	PASS	END=20114037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	20114038	.	G	.	.	PASS	END=20114040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr2	20114041	.	A	.	.	PASS	END=20114047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	20114048	.	A	.	.	PASS	END=20114054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	20114055	.	A	.	.	PASS	END=20114058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	20114059	.	G	.	.	PASS	END=20114062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	20114063	.	T	.	.	PASS	END=20114089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	20130106	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr2	20130107	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	20130108	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr2	20130109	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	20130110	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr2	20130111	.	A	.	.	LowGQX	END=20130112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr2	20130113	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr2	20130114	.	T	.	.	LowGQX	END=20130121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr2	20130122	.	T	.	.	PASS	END=20130128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	20130129	.	T	.	.	PASS	END=20130130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	20130131	.	C	.	.	PASS	END=20130135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	20130136	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:25:60
chr2	20130137	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:54:60
chr2	20130138	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:9:60
chr2	20130139	.	A	.	.	PASS	END=20130147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	20130148	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:18:60
chr2	20130149	.	A	.	.	PASS	END=20130155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr2	20130156	.	C	.	.	PASS	END=20130165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr2	20130166	.	G	.	.	PASS	END=20130175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr2	20130176	.	C	.	.	PASS	END=20130190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	20130191	.	G	.	.	PASS	END=20130214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	20130215	.	G	.	.	PASS	END=20130241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	20130242	.	T	.	.	PASS	END=20130309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	20130310	.	T	.	.	PASS	END=20130335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	20130336	.	C	.	.	PASS	END=20130361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:87:60
chr2	20130362	.	A	.	.	PASS	END=20130364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	20130979	.	T	.	.	PASS	END=20130983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	20130984	.	C	.	156.54	PASS	DP=74;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:57:74:99:60:99
chr2	20130985	.	T	.	.	PASS	END=20131005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	20131006	.	A	.	.	PASS	END=20131078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	20131079	.	T	C	1863.02	PASS	BaseQRankSum=-0.884;DP=126;Dels=0.00;FS=2.373;HRun=1;HaplotypeScore=16.0976;MQ=60;MQ0=0;MQRankSum=0.970;QD=14.79;ReadPosRankSum=-1.459;SB=-932.49	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:54,70:126:99:1893,0,1466:60:99:0.565
chr2	20131080	.	C	.	.	PASS	END=20131111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	20131112	.	A	.	.	PASS	END=20131183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	20131184	.	C	A	4366.54	PASS	DP=146;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=13.2569;MQ=60;MQ0=0;QD=29.91;SB=-2237.46	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,145:146:99:4367,334,0:60:99:1.000
chr2	20131185	.	A	.	.	PASS	END=20131221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	20131993	.	A	.	.	PASS	END=20132029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	20132030	.	G	.	.	PASS	END=20132102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	20132103	.	C	.	.	PASS	END=20132161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	20132162	.	A	.	.	PASS	END=20132245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	20132246	.	T	.	.	PASS	END=20132257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	20132258	.	A	.	.	PASS	END=20132259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	20133111	.	T	.	.	PASS	END=20133129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	20133130	.	A	.	.	PASS	END=20133248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr2	20133249	.	T	.	.	PASS	END=20133278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	20133279	.	A	.	.	PASS	END=20133323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	20135164	.	C	.	.	PASS	END=20135198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr2	20135199	.	A	.	.	PASS	END=20135204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr2	20135205	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:33:60
chr2	20135206	.	C	.	.	PASS	END=20135234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr2	20135235	.	A	.	.	PASS	END=20135247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr2	20135248	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:48:60
chr2	20135249	.	T	.	.	PASS	END=20135349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr2	20135350	.	T	.	.	PASS	END=20135358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	20135359	.	T	.	.	PASS	END=20135381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr2	20135382	.	G	.	.	PASS	END=20135383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:42:60
chr2	20135384	.	A	.	.	PASS	END=20135401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr2	20135402	.	G	.	.	PASS	END=20135415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:42:60
chr2	20135929	.	A	.	.	PASS	END=20135932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	20135933	.	A	.	.	PASS	END=20135954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	20135955	.	G	.	.	PASS	END=20136049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	20136050	.	C	.	.	PASS	END=20136167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr2	20137453	.	C	.	.	PASS	END=20137470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	20137471	.	G	.	.	PASS	END=20137495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	20137496	.	T	.	.	PASS	END=20137520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	20137521	.	A	.	.	PASS	END=20137536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	20137537	.	T	.	.	PASS	END=20137645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	20137646	.	C	.	.	PASS	END=20137671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	20137672	.	T	.	.	PASS	END=20137673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	20137674	.	C	.	.	PASS	END=20137698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr2	20137699	.	A	.	.	PASS	END=20137704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr2	20137705	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:42:60
chr2	20137706	.	G	.	.	PASS	END=20137730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr2	20137731	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:48:60
chr2	20137732	.	A	.	.	PASS	END=20137752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	20137753	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:39:60
chr2	20137754	.	T	.	.	PASS	END=20137758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	20137975	.	C	.	.	PASS	END=20137982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr2	20137983	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:50:60
chr2	20137984	.	C	.	.	PASS	END=20137989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr2	20137990	.	C	.	.	PASS	END=20138011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr2	20138012	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:70:60
chr2	20138013	.	T	.	.	PASS	END=20138045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:89:60
chr2	20138046	.	G	.	.	PASS	END=20138065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	20138066	.	C	.	.	PASS	END=20138197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	20138198	.	T	.	.	PASS	END=20138213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	20141469	.	A	.	.	PASS	END=20141578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr2	20141579	.	A	.	.	PASS	END=20141596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	20141597	.	G	.	.	PASS	END=20141618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	20141619	.	A	.	.	PASS	END=20141651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	20145496	.	T	.	.	PASS	END=20145511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	20145512	.	T	.	.	PASS	END=20145539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr2	20145540	.	T	.	.	PASS	END=20145671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:246:99:60
chr2	20145672	.	C	.	.	PASS	END=20145680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr2	20145681	.	G	.	.	PASS	END=20145764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:249:99:60
chr2	20145765	.	C	.	.	PASS	END=20145808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr2	20146171	.	A	.	.	PASS	END=20146211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	20146212	.	T	.	.	PASS	END=20146232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	20146233	.	A	.	.	PASS	END=20146316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	20146317	.	G	.	.	PASS	END=20146358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	20146359	.	G	.	.	PASS	END=20146370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	20146371	.	C	.	.	PASS	END=20146382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr2	20147874	.	T	.	.	PASS	END=20147896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	20147897	.	T	.	.	PASS	END=20147934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	20147935	.	A	.	.	PASS	END=20148029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr2	20151125	.	A	.	.	PASS	END=20151143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	20151144	.	T	.	.	PASS	END=20151184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	20151185	.	T	.	.	PASS	END=20151222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	20151223	.	G	.	.	PASS	END=20151293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	20151294	.	T	.	.	PASS	END=20151296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	20153544	.	C	.	.	PASS	END=20153556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	20153557	.	T	.	.	PASS	END=20153564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	20153565	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:66:60
chr2	20153566	.	T	.	.	PASS	END=20153581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	20153582	.	T	.	.	PASS	END=20153617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	20153618	.	C	.	.	PASS	END=20153732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	20153733	.	A	.	.	PASS	END=20153769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	20153770	.	G	.	.	PASS	END=20153786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	20153787	.	A	.	.	PASS	END=20153790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	20160264	.	G	.	.	PASS	END=20160298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr2	20160299	.	A	.	.	PASS	END=20160333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr2	20160334	.	A	.	.	PASS	END=20160409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:97:60
chr2	20160410	.	C	.	.	PASS	END=20160426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	20162005	.	A	.	.	PASS	END=20162026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr2	20162027	.	G	.	.	PASS	END=20162122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr2	20162123	.	A	.	.	PASS	END=20162139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr2	20166434	.	T	.	.	PASS	END=20166453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	20166454	.	G	.	.	PASS	END=20166465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	20166466	.	G	.	.	PASS	END=20166495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	20166496	.	T	.	.	PASS	END=20166609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:60
chr2	20166610	.	A	.	.	PASS	END=20166647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	20166648	.	A	.	.	PASS	END=20166686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	20166687	.	G	.	.	PASS	END=20166719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	20166720	.	T	.	.	PASS	END=20166721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	20169190	.	A	.	.	PASS	END=20169220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr2	20169221	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:57:60
chr2	20169222	.	A	.	.	PASS	END=20169267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr2	20169268	.	A	.	.	PASS	END=20169322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	20169323	.	A	.	.	PASS	END=20169346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	20169347	.	A	.	.	PASS	END=20169395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr2	20169396	.	G	.	.	PASS	END=20169407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	20169408	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:41:60
chr2	20169409	.	C	.	.	PASS	END=20169417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	20173273	.	C	.	.	PASS	END=20173303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	20173304	.	A	.	.	PASS	END=20173354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	20173355	.	T	.	.	PASS	END=20173419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	20173420	.	G	.	.	PASS	END=20173509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	20173510	.	C	.	.	PASS	END=20173520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	20174178	.	A	.	.	PASS	END=20174238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	20174239	.	C	.	.	PASS	END=20174293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	20174294	.	C	.	.	PASS	END=20174311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	20174312	.	C	.	.	PASS	END=20174445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr2	20175240	.	C	.	.	PASS	END=20175245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	20175246	.	T	.	.	PASS	END=20175269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	20175270	.	C	.	.	PASS	END=20175281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr2	20175282	.	C	.	.	PASS	END=20175385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr2	20175386	.	G	.	.	PASS	END=20175394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	20175395	.	C	.	.	PASS	END=20175411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	20175412	.	C	.	.	PASS	END=20175423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	20175424	.	C	.	.	PASS	END=20175465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	20175466	.	C	.	.	PASS	END=20175475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	20178461	.	A	.	.	PASS	END=20178488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	20178489	.	T	.	.	PASS	END=20178620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	20178621	.	C	.	.	PASS	END=20178639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	20178640	.	C	.	.	PASS	END=20178670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	20178671	.	C	.	.	PASS	END=20178691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	20180401	.	T	.	.	PASS	END=20180489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	20180490	.	T	.	.	PASS	END=20180544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	20180545	.	C	.	.	PASS	END=20180595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	20182173	.	A	.	.	PASS	END=20182259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	20182260	.	T	.	.	PASS	END=20182277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	20182278	.	C	.	.	PASS	END=20182329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	20182330	.	A	.	.	PASS	END=20182346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	20188875	.	A	.	.	PASS	END=20188953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	20188954	.	C	.	.	PASS	END=20188987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	20188988	.	C	.	.	PASS	END=20189001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	20189002	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:30:60
chr2	20189003	.	C	.	.	PASS	END=20189012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr2	20189013	.	A	.	.	PASS	END=20189022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr2	20189023	.	C	.	.	PASS	END=20189026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr2	20189027	.	T	.	.	PASS	END=20189033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	20189034	.	G	.	.	PASS	END=20189051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr2	20189052	.	G	.	.	PASS	END=20189055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr2	20189056	.	C	.	.	PASS	END=20189076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr2	20189077	.	T	.	.	PASS	END=20189089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	20189090	.	T	.	.	PASS	END=20189094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	20189702	.	C	.	.	PASS	END=20189791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:92:60
chr2	20189792	.	A	.	.	PASS	END=20189810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr2	20189811	.	A	.	.	PASS	END=20189813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr2	20189814	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr2	20189815	.	C	.	.	PASS	END=20189816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr2	20189817	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:57:60
chr2	20189818	.	C	.	.	PASS	END=20189826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	20189827	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:63:60
chr2	20192820	.	A	.	.	PASS	END=20192825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr2	20192826	.	A	.	.	PASS	END=20192831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	20192832	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:35:60
chr2	20192833	.	C	.	.	PASS	END=20192902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	20192903	.	T	.	.	PASS	END=20192944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr2	20192945	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:29:60
chr2	20192946	.	C	.	.	PASS	END=20192959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	20192960	.	T	.	.	PASS	END=20192979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	20194035	.	G	.	.	PASS	END=20194058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	20194059	.	T	.	.	PASS	END=20194163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr2	20194164	.	T	.	.	PASS	END=20194191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	20194192	.	A	.	.	PASS	END=20194194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	20196834	.	A	.	.	PASS	END=20196911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	20196912	.	T	.	.	PASS	END=20196962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	20196963	.	C	.	.	PASS	END=20197016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	20197017	.	C	.	.	PASS	END=20197020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	20200201	.	C	.	.	PASS	END=20200237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	20200238	.	C	.	.	PASS	END=20200360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	20201715	.	C	.	.	PASS	END=20201744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr2	20201745	.	G	.	.	PASS	END=20201789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr2	20201790	.	T	.	.	PASS	END=20201842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:260:99:60
chr2	20201843	.	T	.	.	PASS	END=20201874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr2	20202911	.	A	.	.	PASS	END=20202950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	20202951	.	G	.	.	PASS	END=20202974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr2	20202975	.	T	.	.	PASS	END=20203047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:271:99:60
chr2	20205504	.	C	.	.	PASS	END=20205548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr2	20205549	.	C	.	.	PASS	END=20205576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	20205577	.	C	.	.	PASS	END=20205615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	20205616	.	T	.	.	PASS	END=20205664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	20205665	.	G	.	.	PASS	END=20205723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr2	20205724	.	C	.	.	PASS	END=20205764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr2	20205765	.	T	.	.	PASS	END=20205861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:60
chr2	20205862	.	A	.	.	PASS	END=20205886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr2	20205887	.	T	.	.	PASS	END=20205915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr2	20205916	.	A	.	.	PASS	END=20205942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	20205943	.	C	.	.	PASS	END=20205968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	20205969	.	A	.	.	PASS	END=20206016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	20206017	.	C	.	.	PASS	END=20206025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	20206026	.	C	.	.	PASS	END=20206042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:96:60
chr2	20206043	.	C	.	.	PASS	END=20206054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	20206055	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:54:60
chr2	20206056	.	C	.	.	PASS	END=20206061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr2	20206062	.	T	.	.	PASS	END=20206064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr2	20206065	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:39:60
chr2	20206066	.	A	.	.	PASS	END=20206071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr2	20212169	.	C	.	.	PASS	END=20212173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	20212174	.	A	.	.	LowGQX	END=20212186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	20212187	.	C	.	.	LowGQX	END=20212198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	20212199	.	G	.	.	LowGQX	END=20212219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	20212220	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr2	20212221	.	C	.	.	LowGQX	END=20212227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	20212228	.	C	.	.	LowGQX	END=20212237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr2	20212238	.	G	.	.	LowGQX	END=20212245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	20212246	.	T	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr2	20212247	.	C	.	.	LowGQX	END=20212253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	20212254	.	T	.	.	LowGQX	.	GT	./.
chr2	20212255	.	G	.	.	LowGQX	END=20212256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20212257	.	C	.	.	LowGQX	.	GT	./.
chr2	20212258	.	C	.	.	LowGQX	END=20212266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20212267	.	T	.	.	LowGQX	.	GT	./.
chr2	20212268	.	C	.	.	LowGQX	END=20212271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20212272	.	T	.	.	LowGQX	.	GT	./.
chr2	20212273	.	C	.	.	LowGQX	END=20212307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20212308	.	C	.	.	LowGQX	END=20212397	GT	./.
chr2	20232954	.	G	.	.	LowGQX	END=20233053	GT	./.
chr2	20234076	.	A	.	.	LowGQX	END=20234178	GT	./.
chr2	20234726	.	A	.	.	LowGQX	END=20234728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20234729	.	T	.	.	LowGQX	END=20234730	GT	./.
chr2	20234731	.	A	.	.	LowGQX	END=20234738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20234739	.	T	.	.	LowGQX	.	GT	./.
chr2	20234740	.	G	.	.	LowGQX	END=20234741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20234742	.	A	.	.	LowGQX	.	GT	./.
chr2	20234743	.	T	.	.	LowGQX	END=20234798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20234799	.	G	.	.	LowGQX	.	GT	./.
chr2	20234800	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20234801	.	T	.	.	LowGQX	.	GT	./.
chr2	20234802	.	C	.	.	LowGQX	END=20234807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20234808	.	T	.	.	LowGQX	.	GT	./.
chr2	20234809	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20234810	.	T	.	.	LowGQX	.	GT	./.
chr2	20234811	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20234812	.	G	.	.	LowGQX	.	GT	./.
chr2	20234813	.	G	.	.	LowGQX	END=20234825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20237056	.	T	.	.	LowGQX	END=20237072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	20237073	.	T	.	.	LowGQX	END=20237125	GT	./.
chr2	20237126	.	A	.	.	LowGQX	END=20237131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20237132	.	A	.	.	LowGQX	.	GT	./.
chr2	20237133	.	C	.	.	LowGQX	END=20237148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20237149	.	G	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.66;ReadPosRankSum=-0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.30:33,0,33:60:5:0.667
chr2	20237150	.	A	.	.	LowGQX	END=20237201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	20237288	.	A	.	.	LowGQX	END=20237387	GT	./.
chr2	20240650	.	A	.	.	LowGQX	END=20240774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20251117	.	C	.	.	LowGQX	END=20251283	GT	./.
chr2	20401997	.	A	.	.	LowGQX	END=20402096	GT	./.
chr2	20402525	.	C	.	.	LowGQX	END=20402534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402535	.	A	.	.	LowGQX	.	GT	./.
chr2	20402536	.	G	.	.	LowGQX	END=20402580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402581	.	T	.	.	LowGQX	.	GT	./.
chr2	20402582	.	T	.	.	LowGQX	END=20402597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	20402598	.	A	.	.	LowGQX	.	GT	./.
chr2	20402599	.	G	.	.	LowGQX	END=20402611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	20402612	.	T	.	.	LowGQX	.	GT	./.
chr2	20402613	.	C	.	.	LowGQX	END=20402635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402636	.	A	.	.	LowGQX	END=20402637	GT	./.
chr2	20402638	.	C	.	.	LowGQX	END=20402647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402648	.	A	.	.	LowGQX	.	GT	./.
chr2	20402649	.	C	.	.	LowGQX	END=20402652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402653	.	G	.	.	LowGQX	.	GT	./.
chr2	20402654	.	C	.	.	LowGQX	END=20402656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402657	.	A	.	.	LowGQX	.	GT	./.
chr2	20402658	.	C	.	.	LowGQX	END=20402663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402664	.	A	.	.	LowGQX	.	GT	./.
chr2	20402665	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402666	.	A	.	.	LowGQX	END=20402667	GT	./.
chr2	20402668	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402669	.	A	.	.	LowGQX	.	GT	./.
chr2	20402670	.	G	.	.	LowGQX	END=20402698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402846	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402847	.	C	.	.	LowGQX	END=20402849	GT	./.
chr2	20402850	.	C	.	.	LowGQX	END=20402851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402852	.	C	.	.	LowGQX	END=20402854	GT	./.
chr2	20402855	.	C	.	.	LowGQX	END=20402859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402860	.	C	.	.	LowGQX	END=20402862	GT	./.
chr2	20402863	.	T	.	.	LowGQX	END=20402865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402866	.	T	.	.	LowGQX	END=20402868	GT	./.
chr2	20402869	.	C	.	.	LowGQX	END=20402872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402873	.	G	.	.	LowGQX	.	GT	./.
chr2	20402874	.	A	.	.	LowGQX	END=20402875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402876	.	G	.	.	LowGQX	.	GT	./.
chr2	20402877	.	C	.	.	LowGQX	END=20402879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402880	.	T	.	.	LowGQX	.	GT	./.
chr2	20402881	.	G	.	.	LowGQX	END=20402887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402888	.	C	.	.	LowGQX	.	GT	./.
chr2	20402889	.	C	.	.	LowGQX	END=20402890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402891	.	C	.	.	LowGQX	.	GT	./.
chr2	20402892	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402893	.	T	.	.	LowGQX	.	GT	./.
chr2	20402894	.	G	.	.	LowGQX	END=20402903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402904	.	T	.	.	LowGQX	.	GT	./.
chr2	20402905	.	C	.	.	LowGQX	END=20402926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20402927	.	G	.	.	LowGQX	END=20402985	GT	./.
chr2	20403572	.	A	.	.	LowGQX	END=20403613	GT	./.
chr2	20403614	.	G	.	.	LowGQX	END=20403635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403636	.	C	.	.	LowGQX	.	GT	./.
chr2	20403637	.	G	.	.	LowGQX	END=20403648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403649	.	A	.	.	LowGQX	.	GT	./.
chr2	20403650	.	C	.	.	LowGQX	END=20403659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403660	.	C	.	.	LowGQX	.	GT	./.
chr2	20403661	.	T	.	.	LowGQX	END=20403676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403677	.	A	.	.	LowGQX	.	GT	./.
chr2	20403678	.	G	.	.	LowGQX	END=20403699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403700	.	A	.	.	LowGQX	.	GT	./.
chr2	20403701	.	G	.	.	LowGQX	END=20403716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403717	.	G	.	.	LowGQX	.	GT	./.
chr2	20403718	.	G	.	.	LowGQX	END=20403727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403728	.	T	.	.	LowGQX	.	GT	./.
chr2	20403729	.	G	.	.	LowGQX	END=20403733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403734	.	T	.	.	LowGQX	END=20403737	GT	./.
chr2	20403738	.	T	.	.	LowGQX	END=20403740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403741	.	G	.	.	LowGQX	.	GT	./.
chr2	20403742	.	G	.	.	LowGQX	END=20403751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403752	.	G	.	.	LowGQX	END=20403753	GT	./.
chr2	20403754	.	G	.	.	LowGQX	END=20403762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403763	.	C	.	.	LowGQX	.	GT	./.
chr2	20403764	.	T	.	.	LowGQX	END=20403768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403769	.	C	.	.	LowGQX	.	GT	./.
chr2	20403770	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403771	.	T	.	.	LowGQX	.	GT	./.
chr2	20403772	.	G	.	.	LowGQX	END=20403773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403774	.	T	.	.	LowGQX	.	GT	./.
chr2	20403775	.	G	.	.	LowGQX	END=20403776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403777	.	C	.	.	LowGQX	END=20403778	GT	./.
chr2	20403779	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403780	.	T	.	.	LowGQX	.	GT	./.
chr2	20403781	.	G	.	.	LowGQX	END=20403782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403783	.	T	.	.	LowGQX	.	GT	./.
chr2	20403784	.	C	.	.	LowGQX	END=20403785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403786	.	T	.	.	LowGQX	.	GT	./.
chr2	20403787	.	T	.	.	LowGQX	END=20403790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403791	.	G	.	.	LowGQX	END=20403792	GT	./.
chr2	20403793	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403794	.	A	.	.	LowGQX	END=20403795	GT	./.
chr2	20403796	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403797	.	T	.	.	LowGQX	END=20403798	GT	./.
chr2	20403799	.	A	.	.	LowGQX	END=20403803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403804	.	T	.	.	LowGQX	.	GT	./.
chr2	20403805	.	C	.	.	LowGQX	END=20403806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403807	.	G	.	.	LowGQX	.	GT	./.
chr2	20403808	.	G	.	.	LowGQX	END=20403811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403812	.	T	.	.	LowGQX	.	GT	./.
chr2	20403813	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403814	.	T	.	.	LowGQX	.	GT	./.
chr2	20403815	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403816	.	T	.	.	LowGQX	.	GT	./.
chr2	20403817	.	G	.	.	LowGQX	END=20403818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403819	.	T	.	.	LowGQX	.	GT	./.
chr2	20403820	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403821	.	T	.	.	LowGQX	.	GT	./.
chr2	20403822	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403823	.	C	.	.	LowGQX	.	GT	./.
chr2	20403824	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403825	.	T	.	.	LowGQX	.	GT	./.
chr2	20403826	.	G	.	.	LowGQX	END=20403828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403829	.	T	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr2	20403830	.	C	.	.	LowGQX	END=20403833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403834	.	G	.	.	LowGQX	.	GT	./.
chr2	20403835	.	G	.	.	LowGQX	END=20403836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403837	.	T	.	.	LowGQX	.	GT	./.
chr2	20403838	.	G	.	.	LowGQX	END=20403840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403841	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	20403842	.	T	.	.	LowGQX	END=20403868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403869	.	T	.	.	LowGQX	.	GT	./.
chr2	20403870	.	C	.	.	LowGQX	END=20403878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403879	.	G	.	.	LowGQX	.	GT	./.
chr2	20403880	.	C	.	.	LowGQX	END=20403892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403893	.	T	.	.	LowGQX	.	GT	./.
chr2	20403894	.	C	.	.	LowGQX	END=20403904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20403905	.	G	.	.	LowGQX	END=20404061	GT	./.
chr2	20405095	.	C	.	.	LowGQX	END=20405194	GT	./.
chr2	20422981	.	C	.	.	LowGQX	END=20423080	GT	./.
chr2	20423891	.	G	.	.	LowGQX	END=20424046	GT	./.
chr2	20424486	.	C	.	.	LowGQX	END=20424645	GT	./.
chr2	20451344	.	A	.	.	LowGQX	END=20451479	GT	./.
chr2	20453581	.	A	.	.	LowGQX	END=20453582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20453583	.	C	.	.	LowGQX	.	GT	./.
chr2	20453584	.	T	.	.	LowGQX	END=20453645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20453646	.	A	.	.	LowGQX	.	GT	./.
chr2	20453647	.	T	.	.	LowGQX	END=20453671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20453672	.	T	.	.	LowGQX	END=20453737	GT	./.
chr2	20453738	.	C	.	.	LowGQX	END=20453741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20453742	.	G	.	.	LowGQX	.	GT	./.
chr2	20453743	.	G	.	.	LowGQX	END=20453762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20453763	.	T	.	.	LowGQX	.	GT	./.
chr2	20453764	.	T	.	.	LowGQX	END=20453773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20453774	.	T	.	.	LowGQX	.	GT	./.
chr2	20453775	.	G	.	.	LowGQX	END=20453777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20454622	.	A	.	.	LowGQX	END=20454747	GT	./.
chr2	20454975	.	A	.	.	LowGQX	END=20455024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	20455025	.	G	.	.	LowGQX	END=20455104	GT	./.
chr2	20455792	.	A	.	.	LowGQX	END=20455971	GT	./.
chr2	20457997	.	C	.	.	LowGQX	END=20458089	GT	./.
chr2	20458090	.	G	.	.	LowGQX	END=20458134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20460096	.	A	.	.	LowGQX	END=20460229	GT	./.
chr2	20462952	.	A	.	.	LowGQX	END=20463223	GT	./.
chr2	20478342	.	A	.	.	LowGQX	END=20478582	GT	./.
chr2	20482706	.	A	.	.	LowGQX	END=20482994	GT	./.
chr2	20483102	.	A	.	.	LowGQX	END=20483249	GT	./.
chr2	20490411	.	A	.	.	LowGQX	END=20490435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	20490436	.	T	.	.	LowGQX	END=20490553	GT	./.
chr2	20494135	.	A	.	.	LowGQX	END=20494281	GT	./.
chr2	20497312	.	A	.	.	LowGQX	END=20497441	GT	./.
chr2	20507736	.	C	.	.	LowGQX	END=20507835	GT	./.
chr2	20508073	.	A	.	.	LowGQX	END=20508246	GT	./.
chr2	20508247	.	G	.	.	LowGQX	END=20508274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20508275	.	A	.	.	LowGQX	END=20508276	GT	./.
chr2	20508277	.	G	.	.	LowGQX	END=20508282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20508283	.	G	.	.	LowGQX	.	GT	./.
chr2	20508284	.	T	.	.	LowGQX	END=20508295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20508296	.	A	.	.	LowGQX	.	GT	./.
chr2	20508297	.	G	.	.	LowGQX	END=20508303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20508304	.	A	.	.	LowGQX	.	GT	./.
chr2	20508305	.	C	.	.	LowGQX	END=20508313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20508314	.	T	.	.	LowGQX	.	GT	./.
chr2	20508315	.	T	.	.	LowGQX	END=20508320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20508321	.	G	.	.	LowGQX	.	GT	./.
chr2	20508322	.	G	.	.	LowGQX	END=20508326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20508327	.	A	.	.	LowGQX	.	GT	./.
chr2	20508328	.	C	.	.	LowGQX	END=20508329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20508330	.	A	.	.	LowGQX	.	GT	./.
chr2	20508331	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20508332	.	T	.	.	LowGQX	.	GT	./.
chr2	20508333	.	T	.	.	LowGQX	END=20508343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20508344	.	G	.	.	LowGQX	.	GT	./.
chr2	20508345	.	A	.	.	LowGQX	END=20508347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20511253	.	A	.	.	LowGQX	END=20511462	GT	./.
chr2	20511995	.	A	.	.	LowGQX	END=20512103	GT	./.
chr2	20512104	.	G	.	.	LowGQX	END=20512174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20512175	.	A	.	.	LowGQX	.	GT	./.
chr2	20512176	.	T	.	.	LowGQX	END=20512194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20518296	.	A	.	.	LowGQX	END=20518408	GT	./.
chr2	20526070	.	C	.	.	LowGQX	END=20526169	GT	./.
chr2	20526989	.	G	.	.	LowGQX	END=20527063	GT	./.
chr2	20527064	.	C	.	.	LowGQX	END=20527146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20647225	.	T	.	.	PASS	END=20647320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	20647321	.	A	.	.	PASS	END=20647381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	20647382	.	G	.	.	PASS	END=20647418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	20647419	.	G	.	.	PASS	END=20647612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	20647613	.	A	.	.	PASS	END=20647663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	20647664	.	C	.	.	PASS	END=20647816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	20647817	.	A	.	.	PASS	END=20647819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	20797955	.	T	.	.	LowGQX	END=20798045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	20798046	.	T	.	.	LowGQX	END=20798053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	20798054	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20818745	.	G	.	.	PASS	END=20818775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	20818776	.	G	.	.	PASS	END=20818807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	20818808	.	T	.	.	PASS	END=20819007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	20822021	.	G	.	.	LowGQX	END=20822024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20822025	.	G	.	.	LowGQX	.	GT	./.
chr2	20822026	.	T	.	.	LowGQX	END=20822037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20822038	.	T	.	.	LowGQX	END=20822120	GT	./.
chr2	20823622	.	G	.	.	PASS	END=20823651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	20823652	.	G	.	.	PASS	END=20823723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	20823724	.	T	C	4496.24	PASS	DP=159;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=12.4131;MQ=60;MQ0=0;QD=28.28;SB=-2665.93	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,159:159:99:4496,337,0:60:99:1.000
chr2	20823725	.	G	.	.	PASS	END=20823766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	20823767	.	T	.	.	PASS	END=20823799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	20823800	.	A	.	.	PASS	END=20823811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	20824490	.	A	.	.	PASS	END=20824497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	20824498	.	C	T	1567.26	PASS	DP=51;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.6815;MQ=60;MQ0=0;QD=30.73;SB=-342.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,51:51:99:1600,120,0:60:99:1.000
chr2	20824499	.	G	.	.	PASS	END=20824615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:79:60
chr2	20824616	.	C	.	.	PASS	END=20824690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr2	20824691	.	C	T	1254.79	PASS	DP=37;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;QD=33.91;SB=-78.64	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,37:37:99:1288,99,0:60:99:1.000
chr2	20824692	.	A	.	.	PASS	END=20824696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr2	20824697	.	T	.	.	PASS	END=20824709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	20838176	.	C	.	.	PASS	END=20838202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	20838203	.	T	.	.	PASS	END=20838224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	20838225	.	C	.	.	PASS	END=20838365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr2	20838366	.	A	.	.	PASS	END=20838397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	20838398	.	C	.	.	PASS	END=20838414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	20840538	.	T	.	.	PASS	END=20840545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	20840546	.	C	.	.	PASS	END=20840570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr2	20840571	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:63:60
chr2	20840572	.	C	.	.	PASS	END=20840599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	20840600	.	A	.	.	PASS	END=20840602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	20840603	.	T	.	.	PASS	END=20840608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr2	20840609	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:59:60
chr2	20840610	.	C	.	.	PASS	END=20840622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr2	20840623	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:75:60
chr2	20840624	.	G	.	.	PASS	END=20840645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr2	20840646	.	T	.	.	PASS	END=20840663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	20840664	.	G	.	.	PASS	END=20840684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	20840685	.	G	.	.	PASS	END=20840709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	20840710	.	A	.	.	PASS	END=20840731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	20840732	.	C	.	.	PASS	END=20840774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr2	20840775	.	C	.	.	PASS	END=20840898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	20840899	.	T	.	.	PASS	END=20840942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	20845098	.	A	.	.	PASS	END=20845243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr2	20845244	.	A	.	.	PASS	END=20845267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr2	20850698	.	C	.	.	LowGQX	END=20850701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	20850702	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr2	20850703	.	G	.	.	LowGQX	END=20850710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	20850711	.	G	.	.	LowGQX	END=20850732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	20850733	.	T	.	.	LowGQX	.	GT	./.
chr2	20850734	.	C	.	.	LowGQX	END=20850739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20850740	.	G	.	.	LowGQX	.	GT	./.
chr2	20850741	.	G	.	.	LowGQX	END=20850743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20850744	.	G	.	.	LowGQX	.	GT	./.
chr2	20850745	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20850746	.	C	.	.	LowGQX	END=20850747	GT	./.
chr2	20850748	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20850749	.	G	.	.	LowGQX	.	GT	./.
chr2	20850750	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20850751	.	A	.	.	LowGQX	.	GT	./.
chr2	20850752	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20850753	.	T	.	.	LowGQX	END=20850754	GT	./.
chr2	20850755	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20850756	.	G	.	.	LowGQX	END=20850759	GT	./.
chr2	20850760	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20850761	.	G	.	.	LowGQX	END=20850857	GT	./.
chr2	20866987	.	G	.	.	LowGQX	END=20867265	GT	./.
chr2	20867266	.	C	.	.	LowGQX	END=20867274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20867275	.	G	.	.	LowGQX	.	GT	./.
chr2	20867276	.	A	.	.	LowGQX	END=20867303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20867304	.	G	.	.	LowGQX	.	GT	./.
chr2	20867305	.	G	.	.	LowGQX	END=20867319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20867320	.	A	.	.	LowGQX	.	GT	./.
chr2	20867321	.	G	.	.	LowGQX	END=20867347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20867348	.	C	.	.	LowGQX	.	GT	./.
chr2	20867349	.	G	.	.	LowGQX	END=20867356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20867357	.	A	.	.	LowGQX	.	GT	./.
chr2	20867358	.	C	.	.	LowGQX	END=20867359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20867360	.	A	.	.	LowGQX	.	GT	./.
chr2	20867361	.	T	.	.	LowGQX	END=20867362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20867363	.	A	.	.	LowGQX	.	GT	./.
chr2	20867364	.	C	.	.	LowGQX	END=20867366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20867367	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	20867368	.	C	.	.	LowGQX	.	GT	./.
chr2	20867369	.	T	.	.	LowGQX	END=20867371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20867372	.	A	.	.	LowGQX	.	GT	./.
chr2	20867373	.	C	.	.	LowGQX	END=20867390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20867391	.	G	.	.	LowGQX	END=20867394	GT	./.
chr2	20867395	.	T	.	.	LowGQX	END=20867396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20870222	.	A	.	.	LowGQX	END=20870630	GT	./.
chr2	20870631	.	G	.	.	LowGQX	END=20870814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20870815	.	G	.	.	LowGQX	END=20870857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	20870858	.	G	.	.	LowGQX	END=20870864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	20870865	.	G	.	.	LowGQX	END=20870917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr2	20870918	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:0:60
chr2	20870919	.	T	.	.	LowGQX	END=20870940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:15:60
chr2	20870941	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:0:60
chr2	20870942	.	G	.	.	LowGQX	END=20870971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr2	20870972	.	C	.	.	LowGQX	END=20871012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	20871013	.	A	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr2	20871014	.	C	.	.	LowGQX	END=20871033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	20871034	.	T	.	.	LowGQX	END=20871047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	20871048	.	G	.	.	LowGQX	END=20871056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20871057	.	G	.	.	LowGQX	.	GT	./.
chr2	20871058	.	C	.	.	LowGQX	END=20871074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20871075	.	T	.	.	LowGQX	.	GT	./.
chr2	20871076	.	G	.	.	LowGQX	END=20871078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20871079	.	T	.	.	LowGQX	.	GT	./.
chr2	20871080	.	G	.	.	LowGQX	END=20871081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20871082	.	C	.	.	LowGQX	.	GT	./.
chr2	20871083	.	A	.	.	LowGQX	END=20871084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20871085	.	C	.	.	LowGQX	END=20871088	GT	./.
chr2	20871089	.	C	.	.	LowGQX	END=20871091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20871092	.	C	.	.	LowGQX	.	GT	./.
chr2	20871093	.	A	.	.	LowGQX	END=20871096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20871097	.	C	.	.	LowGQX	.	GT	./.
chr2	20871098	.	C	.	.	LowGQX	END=20871110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20871111	.	T	.	.	LowGQX	END=20871187	GT	./.
chr2	20884620	.	C	.	.	LowGQX	END=20884719	GT	./.
chr2	20885306	.	C	.	.	LowGQX	END=20885417	GT	./.
chr2	20886661	.	A	.	.	LowGQX	END=20886856	GT	./.
chr2	20901322	.	G	.	.	LowGQX	END=20901421	GT	./.
chr2	20939729	.	A	.	.	LowGQX	END=20939881	GT	./.
chr2	20939882	.	G	.	.	LowGQX	END=20939899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20939900	.	A	.	.	LowGQX	.	GT	./.
chr2	20939901	.	A	.	.	LowGQX	END=20939967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20974548	.	T	.	.	LowGQX	END=20974741	GT	./.
chr2	20988897	.	T	.	.	LowGQX	END=20988933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	20988934	.	G	.	.	LowGQX	END=20989100	GT	./.
chr2	20990013	.	A	.	.	LowGQX	END=20990016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	20990017	.	T	.	.	LowGQX	END=20990160	GT	./.
chr2	21001052	.	C	.	.	LowGQX	END=21001225	GT	./.
chr2	21224551	.	T	.	.	PASS	END=21224613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	21224614	.	A	G	1083.98	PASS	BaseQRankSum=-0.360;DP=110;Dels=0.00;FS=1.560;HRun=1;HaplotypeScore=11.5189;MQ=60;MQ0=0;MQRankSum=-0.520;QD=9.85;ReadPosRankSum=0.569;SB=-30.33	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:64,45:110:99:1114,0,1768:60:99:0.413
chr2	21224615	.	G	.	.	PASS	END=21224638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	21224639	.	A	.	.	PASS	END=21224661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	21224662	.	T	.	.	PASS	END=21224686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr2	21224687	.	G	.	.	PASS	END=21224709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr2	21224710	.	G	.	.	PASS	END=21224754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:297:99:60
chr2	21224755	.	A	.	.	PASS	END=21224841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:302:99:60
chr2	21224842	.	C	.	.	PASS	END=21224888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr2	21224889	.	G	.	.	PASS	END=21225010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr2	21225011	.	C	.	.	PASS	END=21225102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:250:99:60
chr2	21225103	.	T	.	.	PASS	END=21225162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr2	21225163	.	G	.	.	PASS	END=21225183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr2	21225184	.	A	.	.	PASS	END=21225254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	21225255	.	A	.	.	PASS	END=21225280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	21225281	.	C	T	3646.04	PASS	DP=115;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=11.4055;MQ=60;MQ0=0;QD=31.70;SB=-1552.19	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,113:115:99:3646,286,0:60:99:1.000
chr2	21225282	.	T	.	.	PASS	END=21225396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	21225397	.	A	.	.	PASS	END=21225469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	21225470	.	T	.	.	PASS	END=21225587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr2	21225588	.	G	.	.	PASS	END=21225639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	21225640	.	A	.	.	PASS	END=21225718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	21225719	.	G	.	.	PASS	END=21225752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	21225753	.	C	T	2362.49	PASS	BaseQRankSum=2.575;DP=166;Dels=0.00;FS=0.590;HRun=2;HaplotypeScore=7.5754;MQ=60;MQ0=0;MQRankSum=-0.864;QD=14.23;ReadPosRankSum=0.695;SB=-1277.55	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:76,90:166:99:2392,0,1825:60:99:0.542
chr2	21225754	.	T	.	.	PASS	END=21225783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	21225784	.	G	.	.	PASS	END=21225806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	21225807	.	T	.	.	PASS	END=21225847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	21225848	.	T	.	.	PASS	END=21225933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	21225934	.	A	.	.	PASS	END=21225963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	21225964	.	G	.	.	PASS	END=21226000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	21226001	.	C	.	.	PASS	END=21226032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	21226033	.	C	.	.	PASS	END=21226063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	21226064	.	G	.	.	PASS	END=21226168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr2	21226169	.	T	.	.	PASS	END=21226207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr2	21226208	.	T	.	.	PASS	END=21226229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr2	21226230	.	T	.	.	PASS	END=21226257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	21227090	.	C	.	.	PASS	END=21227106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	21227107	.	C	.	.	PASS	END=21227123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	21227124	.	C	.	.	PASS	END=21227149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	21227150	.	G	.	.	PASS	END=21227296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	21227297	.	A	.	.	PASS	END=21227375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	21227382	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:114:99:60
chr2	21227383	.	C	G	1340.50	PASS	BaseQRankSum=0.468;DP=114;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=9.5644;MQ=60;MQ0=0;MQRankSum=0.088;QD=11.76;ReadPosRankSum=1.068;SB=-618.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:58,56:114:99:1370,0,1404:60:99:0.491
chr2	21227384	.	A	.	.	PASS	END=21227504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	21227505	.	T	.	.	PASS	END=21227556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	21227557	.	A	.	.	PASS	END=21227594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	21227595	.	G	.	.	PASS	END=21227598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr2	21227901	.	C	.	.	PASS	END=21227915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	21227916	.	T	.	.	PASS	END=21227921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:96:60
chr2	21227922	.	A	.	.	PASS	END=21227950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	21227951	.	C	.	.	PASS	END=21227973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	21227974	.	C	.	.	PASS	END=21227993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	21227994	.	T	.	.	PASS	END=21228033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	21228034	.	C	.	.	PASS	END=21228057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	21228058	.	A	.	.	PASS	END=21228151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr2	21228152	.	T	.	.	PASS	END=21228186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr2	21228187	.	C	.	.	PASS	END=21228416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:280:99:60
chr2	21228417	.	T	.	.	PASS	END=21228544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr2	21228545	.	A	.	.	PASS	END=21228696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr2	21228697	.	G	.	.	PASS	END=21228781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr2	21228782	.	T	.	.	PASS	END=21228890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:271:99:60
chr2	21228891	.	C	.	.	PASS	END=21229036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr2	21229037	.	T	.	.	PASS	END=21229159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:60
chr2	21229160	.	C	.	.	PASS	END=21229224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr2	21229225	.	A	.	.	PASS	END=21229329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr2	21229330	.	G	.	.	PASS	END=21229364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr2	21229365	.	C	.	.	PASS	END=21229515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:252:99:60
chr2	21229516	.	A	.	.	PASS	END=21229652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr2	21229653	.	C	.	.	PASS	END=21229729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr2	21229730	.	A	.	.	PASS	END=21229798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr2	21229799	.	T	.	.	PASS	END=21229930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:252:99:60
chr2	21229931	.	A	.	.	PASS	END=21230044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr2	21230045	.	T	.	.	PASS	END=21230141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr2	21230142	.	T	.	.	PASS	END=21230171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	21230172	.	A	.	.	PASS	END=21230203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr2	21230204	.	T	.	.	PASS	END=21230306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:249:99:60
chr2	21230307	.	G	.	.	PASS	END=21230441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:279:99:60
chr2	21230442	.	G	.	.	PASS	END=21230471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:60
chr2	21230472	.	T	.	.	PASS	END=21230572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr2	21230573	.	A	.	.	PASS	END=21230656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:283:99:60
chr2	21230657	.	T	.	.	PASS	END=21230692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr2	21230693	.	T	.	.	PASS	END=21230755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr2	21230756	.	T	.	.	PASS	END=21230894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	21230895	.	T	.	.	PASS	END=21230994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	21230995	.	T	.	.	PASS	END=21231072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	21231073	.	G	.	.	PASS	END=21231236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	21231237	.	G	.	.	PASS	END=21231263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr2	21231264	.	C	.	.	PASS	END=21231318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:280:99:60
chr2	21231319	.	A	.	.	PASS	END=21231440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:356:99:60
chr2	21231441	.	G	.	.	PASS	END=21231611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:326:99:60
chr2	21231612	.	C	.	.	PASS	END=21231672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr2	21231673	.	T	.	.	PASS	END=21231767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr2	21231768	.	T	.	.	PASS	END=21231884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:246:99:60
chr2	21231885	.	C	.	.	PASS	END=21231931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:267:99:60
chr2	21231932	.	C	.	.	PASS	END=21232103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr2	21232104	.	G	.	.	PASS	END=21232194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr2	21232195	.	G	A	3749.12	PASS	BaseQRankSum=4.151;DP=248;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=28.8771;MQ=60;MQ0=0;MQRankSum=0.466;QD=15.12;ReadPosRankSum=1.364;SB=-1904.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:117,130:248:99:3749,0,2968:60:99:0.526
chr2	21232196	.	G	.	.	PASS	END=21232299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr2	21232300	.	A	.	.	PASS	END=21232448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:257:99:60
chr2	21232449	.	C	.	.	PASS	END=21232593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:253:99:60
chr2	21232594	.	T	.	.	PASS	END=21232802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:263:99:60
chr2	21232803	.	T	C	8630.13	PASS	DP=277;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=12.5722;MQ=60;MQ0=0;QD=31.16;SB=-4482.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,276:277:99:8630,665,0:60:99:1.000
chr2	21232804	.	G	A	3722.98	PASS	BaseQRankSum=3.409;DP=273;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=16.4648;MQ=60;MQ0=0;MQRankSum=-0.274;QD=13.64;ReadPosRankSum=0.123;SB=-1959.29	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:137,136:273:99:3723,0,3708:60:99:0.498
chr2	21232805	.	T	.	.	PASS	END=21233008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr2	21233009	.	C	.	.	PASS	END=21233095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	21233096	.	T	.	.	PASS	END=21233201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	21233202	.	G	.	.	PASS	END=21233256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	21233257	.	A	.	.	PASS	END=21233379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	21233380	.	C	.	.	PASS	END=21233427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	21233428	.	A	.	.	PASS	END=21233494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	21233495	.	T	.	.	PASS	END=21233638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr2	21233639	.	A	.	.	PASS	END=21233849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	21233850	.	G	.	.	PASS	END=21234081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr2	21234082	.	A	.	.	PASS	END=21234181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr2	21234182	.	G	.	.	PASS	END=21234343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:246:99:60
chr2	21234344	.	C	.	.	PASS	END=21234430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr2	21234431	.	A	.	.	PASS	END=21234621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr2	21234622	.	T	.	.	PASS	END=21234747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	21234748	.	G	.	.	PASS	END=21234842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	21234843	.	T	.	.	PASS	END=21234931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	21234932	.	T	.	.	PASS	END=21234973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	21234974	.	A	.	.	PASS	END=21235009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	21235010	.	T	.	.	PASS	END=21235101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	21235102	.	G	.	.	PASS	END=21235158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	21235159	.	G	.	.	PASS	END=21235207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	21235208	.	G	.	.	PASS	END=21235302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	21235303	.	C	.	.	PASS	END=21235333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	21235334	.	A	.	.	PASS	END=21235385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	21235386	.	A	.	.	PASS	END=21235470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	21235471	.	A	.	.	PASS	END=21235474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	21235475	.	T	C	3669.77	PASS	DP=113;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=32.48;SB=-1076.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,113:113:99:3670,280,0:60:99:1.000
chr2	21235476	.	A	.	.	PASS	END=21235480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	21235481	.	A	.	.	PASS	END=21235495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	21235496	.	T	.	.	PASS	END=21235507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	21235508	.	G	.	.	PASS	END=21235521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr2	21235522	.	T	.	.	PASS	END=21235538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr2	21235539	.	A	.	.	PASS	END=21235565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr2	21235566	.	A	.	.	PASS	END=21235574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr2	21235981	.	A	.	.	LowGQX	END=21235982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr2	21235983	.	A	.	.	LowGQX	END=21235984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	21235985	.	C	.	.	LowGQX	END=21235987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	21235988	.	G	.	.	PASS	END=21235992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	21235993	.	G	.	.	PASS	END=21235994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:60
chr2	21235995	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr2	21235996	.	C	.	.	PASS	END=21236000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	21236001	.	C	.	.	PASS	END=21236002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	21236003	.	G	.	.	PASS	END=21236005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	21236006	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:6:60
chr2	21236007	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:42:60
chr2	21236008	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr2	21236009	.	C	.	.	PASS	END=21236026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	21236027	.	C	.	.	PASS	END=21236039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr2	21236040	.	T	.	.	PASS	END=21236069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr2	21236070	.	G	.	.	PASS	END=21236089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr2	21236090	.	C	.	.	PASS	END=21236108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	21236109	.	G	.	.	PASS	END=21236126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	21236127	.	C	.	.	PASS	END=21236153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	21236154	.	T	.	.	PASS	END=21236274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr2	21236275	.	A	.	.	PASS	END=21236294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	21236295	.	G	.	.	PASS	END=21236312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	21236313	.	A	.	.	PASS	END=21236330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	21236331	.	G	.	.	PASS	END=21236436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	21236437	.	A	.	.	PASS	END=21236450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr2	21236451	.	C	.	.	PASS	END=21236456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr2	21237269	.	C	.	.	PASS	END=21237277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr2	21237278	.	A	.	.	PASS	END=21237287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	21237288	.	G	.	.	PASS	END=21237311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	21237312	.	T	.	.	PASS	END=21237359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	21237360	.	A	.	.	PASS	END=21237417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	21237418	.	G	.	.	PASS	END=21237462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	21237463	.	T	.	.	PASS	END=21237516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	21237894	.	G	.	.	PASS	END=21237903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr2	21237904	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:51:60
chr2	21237905	.	T	.	.	PASS	END=21237947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr2	21237948	.	T	.	.	PASS	END=21237985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	21237986	.	T	.	.	PASS	END=21237994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	21237995	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:69:60
chr2	21237996	.	T	.	.	PASS	END=21238010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	21238011	.	T	.	.	PASS	END=21238021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	21238022	.	A	.	.	PASS	END=21238051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	21238052	.	G	.	.	PASS	END=21238171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	21238172	.	C	.	.	PASS	END=21238183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	21238191	.	T	.	.	PASS	END=21238267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	21238268	.	A	.	.	PASS	END=21238288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	21238289	.	G	.	.	PASS	END=21238391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	21238392	.	T	.	.	PASS	END=21238436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr2	21238437	.	T	.	.	PASS	END=21238468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr2	21239260	.	A	.	.	PASS	END=21239267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr2	21239268	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:24:60
chr2	21239269	.	C	.	.	PASS	END=21239273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr2	21239274	.	C	.	.	PASS	END=21239292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr2	21239293	.	A	.	.	PASS	END=21239320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	21239321	.	C	.	.	PASS	END=21239327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:91:60
chr2	21239328	.	G	.	.	PASS	END=21239379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	21239380	.	G	.	.	PASS	END=21239475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	21239476	.	T	.	.	PASS	END=21239520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	21239521	.	C	.	.	PASS	END=21239538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	21239539	.	A	.	.	PASS	END=21239549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr2	21239550	.	A	.	.	PASS	END=21239564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr2	21239565	.	C	.	.	PASS	END=21239572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr2	21241813	.	T	.	.	PASS	END=21241848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	21241849	.	G	.	.	PASS	END=21241891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	21241892	.	A	.	.	PASS	END=21241946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	21241947	.	T	.	.	PASS	END=21241984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	21241985	.	T	.	.	PASS	END=21242018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	21242019	.	T	.	.	PASS	END=21242034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr2	21242035	.	T	.	.	PASS	END=21242036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr2	21242544	.	C	.	.	PASS	END=21242708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr2	21242709	.	G	.	.	PASS	END=21242828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr2	21245652	.	T	.	.	PASS	END=21245822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	21245823	.	A	.	.	PASS	END=21245965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr2	21246346	.	C	.	.	PASS	END=21246377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	21246378	.	A	.	.	PASS	END=21246410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	21246411	.	G	.	.	PASS	END=21246434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	21246435	.	G	.	.	PASS	END=21246582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	21246583	.	A	.	.	PASS	END=21246615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	21247657	.	C	.	.	LowGQX	END=21247673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	21247674	.	A	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr2	21247675	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr2	21247676	.	C	.	.	LowGQX	END=21247698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	21247699	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:60
chr2	21247700	.	G	.	.	LowGQX	END=21247702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	21247703	.	T	.	.	LowGQX	END=21247708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	21247709	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr2	21247710	.	G	.	.	LowGQX	END=21247712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	21247713	.	C	.	.	LowGQX	END=21247714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	21247715	.	T	.	.	LowGQX	END=21247727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr2	21247728	.	T	.	.	PASS	END=21247736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	21247737	.	A	.	.	PASS	END=21247765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	21247766	.	T	.	.	PASS	END=21247767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr2	21247768	.	T	.	.	PASS	END=21247783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr2	21247784	.	C	.	.	PASS	END=21247792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	21247793	.	C	.	.	PASS	END=21247796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	21247797	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:39:60
chr2	21247798	.	G	.	.	PASS	END=21247803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	21247804	.	C	.	.	PASS	END=21247814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	21247815	.	A	.	.	PASS	END=21247816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr2	21247817	.	C	.	.	PASS	END=21247820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr2	21247821	.	T	.	.	PASS	END=21247831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	21247832	.	G	.	.	PASS	END=21247856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	21247857	.	A	.	.	PASS	END=21247926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	21247927	.	C	.	.	PASS	END=21247971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	21247972	.	T	.	.	PASS	END=21247991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	21247992	.	A	.	.	PASS	END=21248018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	21248019	.	G	.	.	PASS	END=21248047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr2	21249609	.	T	.	.	PASS	END=21249611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	21249612	.	C	.	.	LowGQX	END=21249613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr2	21249614	.	T	.	.	PASS	END=21249618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	21249619	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr2	21249620	.	C	.	.	PASS	END=21249621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	21249622	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	21249623	.	A	.	.	PASS	END=21249633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	21249634	.	T	.	.	PASS	END=21249651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr2	21249652	.	A	.	.	PASS	END=21249661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	21249662	.	G	.	.	PASS	END=21249668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	21249669	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:18:60
chr2	21249670	.	T	.	.	PASS	END=21249685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	21249686	.	A	.	.	PASS	END=21249687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr2	21249688	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:36:60
chr2	21249689	.	C	.	.	PASS	END=21249715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	21249716	.	C	.	.	PASS	END=21249736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	21249737	.	T	.	.	PASS	END=21249748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	21249749	.	A	.	.	PASS	END=21249764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	21249765	.	G	.	.	PASS	END=21249887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	21250649	.	T	.	.	PASS	END=21250670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr2	21250671	.	C	.	.	PASS	END=21250710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr2	21250711	.	C	.	.	PASS	END=21250861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:272:99:60
chr2	21250862	.	C	.	.	PASS	END=21250913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr2	21250914	.	G	A	3071.10	PASS	BaseQRankSum=3.321;DP=233;Dels=0.00;FS=6.047;HRun=1;HaplotypeScore=16.1985;MQ=60;MQ0=0;MQRankSum=-1.959;QD=13.18;ReadPosRankSum=1.670;SB=-583.64	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:120,113:233:99:3101,0,3166:60:99:0.485
chr2	21250915	.	C	.	.	PASS	END=21250961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr2	21250962	.	A	.	.	PASS	END=21250980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	21250981	.	T	.	.	PASS	END=21250988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	21251148	.	A	.	.	PASS	END=21251167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	21251168	.	G	.	.	PASS	END=21251192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	21251193	.	A	.	.	PASS	END=21251235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	21251236	.	C	.	.	PASS	END=21251300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr2	21251301	.	T	.	.	PASS	END=21251342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr2	21251343	.	T	.	.	PASS	END=21251386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	21251387	.	A	.	.	PASS	END=21251423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	21251424	.	A	.	.	PASS	END=21251449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	21251450	.	T	.	.	PASS	END=21251461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	21252460	.	A	.	.	PASS	END=21252491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	21252492	.	C	.	.	PASS	END=21252513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr2	21252514	.	G	.	.	PASS	END=21252540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	21252541	.	C	.	.	PASS	END=21252591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	21252592	.	T	.	.	PASS	END=21252680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	21252681	.	A	.	.	PASS	END=21252708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	21252719	.	C	.	.	PASS	END=21252810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	21252811	.	C	.	.	PASS	END=21252841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	21252842	.	A	.	.	PASS	END=21252862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	21252863	.	C	.	.	PASS	END=21252878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	21252879	.	T	.	.	PASS	END=21252893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr2	21252894	.	A	.	.	PASS	END=21252909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	21252910	.	C	.	.	PASS	END=21252917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	21252918	.	G	.	.	PASS	END=21252931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	21252932	.	G	.	.	PASS	END=21252936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	21252937	.	G	.	.	PASS	END=21252938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	21255175	.	T	.	.	PASS	END=21255187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr2	21255188	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:51:60
chr2	21255189	.	C	.	.	PASS	END=21255203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr2	21255204	.	G	.	.	PASS	END=21255224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr2	21255225	.	C	.	.	PASS	END=21255239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	21255240	.	G	.	.	PASS	END=21255250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	21255251	.	A	.	.	PASS	END=21255271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	21255272	.	G	.	.	PASS	END=21255284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr2	21255285	.	G	.	.	PASS	END=21255406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr2	21255407	.	A	.	.	PASS	END=21255427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	21255428	.	G	.	.	PASS	END=21255452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	21255453	.	G	.	.	PASS	END=21255478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	21255479	.	T	.	.	PASS	END=21255483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	21255484	.	A	.	.	PASS	END=21255498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	21255499	.	C	.	.	PASS	END=21255504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr2	21256120	.	C	.	.	PASS	END=21256127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr2	21256128	.	T	.	.	PASS	END=21256129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	21256130	.	C	.	.	LowGQX	END=21256131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr2	21256132	.	A	.	.	PASS	END=21256136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	21256137	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	21256138	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	21256139	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	21256140	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	21256141	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr2	21256142	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	21256143	.	A	.	.	LowGQX	END=21256144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	21256145	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	21256146	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	21256147	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	21256148	.	G	.	.	LowGQX	END=21256159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	21256160	.	C	.	.	PASS	END=21256167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	21256168	.	T	.	.	PASS	END=21256177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr2	21256178	.	C	.	.	PASS	END=21256186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	21256187	.	G	.	.	PASS	END=21256193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr2	21256194	.	C	.	.	PASS	END=21256210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	21256211	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:52:60
chr2	21256212	.	T	.	.	PASS	END=21256226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr2	21256227	.	T	.	.	PASS	END=21256255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	21256256	.	G	.	.	PASS	END=21256338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	21256339	.	G	.	.	PASS	END=21256369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	21256370	.	C	.	.	PASS	END=21256376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr2	21256377	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:51:60
chr2	21256378	.	A	.	.	PASS	END=21256406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr2	21256407	.	G	.	.	PASS	END=21256440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr2	21256441	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:93:60
chr2	21257637	.	A	.	.	PASS	END=21257653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	21257654	.	A	.	.	PASS	END=21257678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	21257679	.	A	.	.	PASS	END=21257774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	21257775	.	T	.	.	PASS	END=21257806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	21257807	.	G	.	.	PASS	END=21257824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	21258405	.	G	.	.	PASS	END=21258442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:98:60
chr2	21258443	.	T	.	.	PASS	END=21258508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	21258509	.	A	.	.	PASS	END=21258536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	21258537	.	T	.	.	PASS	END=21258554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	21258555	.	C	.	.	PASS	END=21258581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr2	21258582	.	T	.	.	PASS	END=21258598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	21258599	.	A	.	.	PASS	END=21258624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	21258625	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:18:60
chr2	21258626	.	T	.	.	PASS	END=21258631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	21259921	.	T	.	.	PASS	END=21259935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	21259936	.	C	.	.	PASS	END=21259937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	21259938	.	T	.	.	PASS	END=21259942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:60
chr2	21259943	.	G	.	.	PASS	END=21259952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr2	21259953	.	G	.	.	PASS	END=21259977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr2	21259978	.	T	.	.	PASS	END=21260012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr2	21260013	.	T	.	.	PASS	END=21260040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	21260041	.	G	.	.	PASS	END=21260103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	21260104	.	G	.	.	PASS	END=21260136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:59
chr2	21260137	.	A	.	.	PASS	END=21260147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:72:59
chr2	21260148	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr2	21260149	.	C	.	.	PASS	END=21260151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:72:60
chr2	21260152	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:39:60
chr2	21260153	.	A	.	.	PASS	END=21260158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr2	21260159	.	T	.	.	PASS	END=21260163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:63:60
chr2	21260164	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:54:60
chr2	21260165	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:9:60
chr2	21260166	.	G	.	.	PASS	END=21260167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	21260168	.	G	.	.	PASS	END=21260169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr2	21260170	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:57:60
chr2	21260171	.	A	.	.	PASS	END=21260174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:36:60
chr2	21260175	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:60:60
chr2	21260176	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:30:60
chr2	21260177	.	T	.	.	PASS	END=21260178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr2	21260779	.	A	.	.	PASS	END=21260815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	21260816	.	T	.	.	PASS	END=21260847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:93:60
chr2	21260848	.	G	.	.	PASS	END=21260941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	21260942	.	A	.	.	PASS	END=21260968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	21260969	.	A	.	.	PASS	END=21260994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	21260995	.	A	.	.	PASS	END=21261019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr2	21261020	.	C	.	.	PASS	END=21261034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr2	21263759	.	T	.	.	PASS	END=21263770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	21263771	.	C	.	.	PASS	END=21263781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	21263782	.	G	.	.	PASS	END=21263806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	21263807	.	T	.	.	PASS	END=21263912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	21263913	.	T	.	.	PASS	END=21263931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	21263932	.	G	.	.	PASS	END=21263955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	21263956	.	C	.	.	PASS	END=21264004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr2	21264005	.	G	.	.	PASS	END=21264006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	21265182	.	G	.	.	PASS	END=21265223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	21265224	.	C	.	.	PASS	END=21265312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	21265313	.	T	.	.	PASS	END=21265335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	21265336	.	C	.	.	PASS	END=21265360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	21265361	.	G	.	.	PASS	END=21265375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:60
chr2	21265376	.	C	.	.	PASS	END=21265399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:92:60
chr2	21266334	.	A	.	.	PASS	END=21266353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	21266354	.	C	.	.	PASS	END=21266375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	21266376	.	A	.	.	PASS	END=21266474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	21266685	.	C	.	.	PASS	END=21266687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr2	21266688	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:0:60
chr2	21266689	.	G	.	.	PASS	END=21266704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr2	21266705	.	C	.	.	PASS	END=21266735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr2	21266736	.	C	.	.	PASS	END=21266767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr2	21266768	.	A	.	.	LowGQX	END=21266775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr2	21266776	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr2	21266777	.	A	.	.	LowGQX	END=21266795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr2	21266796	.	G	.	.	LowGQX	END=21266809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	21266810	.	G	.	.	LowGQX	END=21266815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	21266816	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr2	21266817	.	T	.	.	LowGQX	END=21266821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	21266822	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr2	21266823	.	G	.	.	LowGQX	END=21266848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	21266849	.	C	.	.	LowGQX	END=21266868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	21360339	.	A	.	.	LowGQX	END=21360804	GT	./.
chr2	21360805	.	G	.	.	LowGQX	END=21360883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21360884	.	G	.	.	LowGQX	.	GT	./.
chr2	21360885	.	A	.	.	LowGQX	END=21360939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	21360940	.	C	.	.	LowGQX	.	GT	./.
chr2	21360941	.	C	.	.	LowGQX	END=21360974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21360975	.	G	.	.	LowGQX	END=21361076	GT	./.
chr2	21361077	.	G	.	.	LowGQX	END=21361098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361099	.	A	.	.	LowGQX	.	GT	./.
chr2	21361100	.	G	.	.	LowGQX	END=21361106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361107	.	T	.	.	LowGQX	.	GT	./.
chr2	21361108	.	T	.	.	LowGQX	END=21361113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361114	.	C	.	.	LowGQX	END=21361115	GT	./.
chr2	21361116	.	G	.	.	LowGQX	END=21361122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361123	.	A	.	.	LowGQX	.	GT	./.
chr2	21361124	.	A	.	.	LowGQX	END=21361128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361129	.	A	.	.	LowGQX	.	GT	./.
chr2	21361130	.	C	.	.	LowGQX	END=21361132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361133	.	C	.	.	LowGQX	.	GT	./.
chr2	21361134	.	A	.	.	LowGQX	END=21361139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361140	.	A	.	.	LowGQX	.	GT	./.
chr2	21361141	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361142	.	A	.	.	LowGQX	.	GT	./.
chr2	21361143	.	A	.	.	LowGQX	END=21361146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361147	.	T	.	.	LowGQX	.	GT	./.
chr2	21361148	.	T	.	.	LowGQX	END=21361150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361151	.	C	.	.	LowGQX	.	GT	./.
chr2	21361152	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361153	.	G	.	.	LowGQX	.	GT	./.
chr2	21361154	.	C	.	.	LowGQX	END=21361178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361179	.	C	.	.	LowGQX	.	GT	./.
chr2	21361180	.	G	.	.	LowGQX	END=21361186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361187	.	A	.	.	LowGQX	.	GT	./.
chr2	21361188	.	A	.	.	LowGQX	END=21361192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361193	.	C	.	.	LowGQX	.	GT	./.
chr2	21361194	.	T	.	.	LowGQX	END=21361200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361201	.	A	.	.	LowGQX	.	GT	./.
chr2	21361202	.	C	.	.	LowGQX	END=21361203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361204	.	T	.	.	LowGQX	.	GT	./.
chr2	21361205	.	G	.	.	LowGQX	END=21361212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361213	.	T	.	.	LowGQX	.	GT	./.
chr2	21361214	.	T	.	.	LowGQX	END=21361217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361218	.	A	.	.	LowGQX	END=21361219	GT	./.
chr2	21361220	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361221	.	G	.	.	LowGQX	.	GT	./.
chr2	21361222	.	C	.	.	LowGQX	END=21361226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361227	.	T	.	.	LowGQX	END=21361294	GT	./.
chr2	21361295	.	T	.	.	LowGQX	END=21361305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361306	.	T	.	.	LowGQX	.	GT	./.
chr2	21361307	.	T	.	.	LowGQX	END=21361318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361319	.	G	.	.	LowGQX	.	GT	./.
chr2	21361320	.	C	.	.	LowGQX	END=21361328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361329	.	G	.	.	LowGQX	.	GT	./.
chr2	21361330	.	G	.	.	LowGQX	END=21361367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361368	.	T	.	.	LowGQX	.	GT	./.
chr2	21361369	.	T	.	.	LowGQX	END=21361372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361373	.	T	.	.	LowGQX	.	GT	./.
chr2	21361374	.	T	.	.	LowGQX	END=21361387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361388	.	T	.	.	LowGQX	.	GT	./.
chr2	21361389	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361390	.	T	.	.	LowGQX	.	GT	./.
chr2	21361391	.	C	.	.	LowGQX	END=21361393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361394	.	T	.	.	LowGQX	.	GT	./.
chr2	21361395	.	T	.	.	LowGQX	END=21361404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361405	.	C	.	.	LowGQX	.	GT	./.
chr2	21361406	.	T	.	.	LowGQX	END=21361428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361429	.	A	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	21361430	.	G	.	.	LowGQX	END=21361435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361436	.	C	.	.	LowGQX	.	GT	./.
chr2	21361437	.	A	.	.	LowGQX	END=21361438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361439	.	G	.	.	LowGQX	.	GT	./.
chr2	21361440	.	A	.	.	LowGQX	END=21361444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21361445	.	T	.	.	LowGQX	END=21362253	GT	./.
chr2	21362254	.	G	.	.	LowGQX	END=21362378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	21362379	.	A	.	.	LowGQX	END=21362783	GT	./.
chr2	21362784	.	G	.	.	LowGQX	END=21362973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21362974	.	T	.	.	LowGQX	END=21363011	GT	./.
chr2	21363012	.	C	.	.	LowGQX	END=21363063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363064	.	C	.	10.71	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.05:60:0
chr2	21363065	.	A	.	.	LowGQX	END=21363072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	21363073	.	C	A	9.30	LowGQX	BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=-0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr2	21363074	.	A	.	.	LowGQX	END=21363095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	21363096	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	21363097	.	C	.	.	LowGQX	END=21363149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363150	.	G	.	.	LowGQX	.	GT	./.
chr2	21363151	.	T	.	.	LowGQX	END=21363157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363158	.	C	.	.	LowGQX	.	GT	./.
chr2	21363159	.	A	.	.	LowGQX	END=21363160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363161	.	T	.	.	LowGQX	END=21363199	GT	./.
chr2	21363200	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363201	.	C	.	.	LowGQX	END=21363203	GT	./.
chr2	21363204	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363205	.	T	.	.	LowGQX	.	GT	./.
chr2	21363206	.	A	.	.	LowGQX	END=21363208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363209	.	C	.	.	LowGQX	.	GT	./.
chr2	21363210	.	T	.	.	LowGQX	END=21363211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363212	.	C	.	.	LowGQX	.	GT	./.
chr2	21363213	.	C	.	.	LowGQX	END=21363216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363217	.	A	.	.	LowGQX	.	GT	./.
chr2	21363218	.	A	.	.	LowGQX	END=21363228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363229	.	G	.	.	LowGQX	.	GT	./.
chr2	21363230	.	G	.	.	LowGQX	END=21363237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363238	.	G	.	.	LowGQX	.	GT	./.
chr2	21363239	.	A	.	.	LowGQX	END=21363240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363241	.	G	.	.	LowGQX	.	GT	./.
chr2	21363242	.	A	.	.	LowGQX	END=21363244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363245	.	T	.	.	LowGQX	.	GT	./.
chr2	21363246	.	A	.	.	LowGQX	END=21363257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363258	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr2	21363259	.	A	.	.	LowGQX	END=21363266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363267	.	T	.	.	LowGQX	END=21363270	GT	./.
chr2	21363271	.	C	.	.	LowGQX	END=21363275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363276	.	G	.	.	LowGQX	.	GT	./.
chr2	21363277	.	T	.	.	LowGQX	END=21363279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363280	.	T	.	.	LowGQX	.	GT	./.
chr2	21363281	.	A	.	.	LowGQX	END=21363284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363285	.	C	.	.	LowGQX	.	GT	./.
chr2	21363286	.	C	.	.	LowGQX	END=21363287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363288	.	G	.	.	LowGQX	.	GT	./.
chr2	21363289	.	C	.	.	LowGQX	END=21363292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363293	.	G	.	.	LowGQX	.	GT	./.
chr2	21363294	.	C	.	.	LowGQX	END=21363295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363296	.	G	.	.	LowGQX	.	GT	./.
chr2	21363297	.	A	.	.	LowGQX	END=21363299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363300	.	T	.	.	LowGQX	.	GT	./.
chr2	21363301	.	A	.	.	LowGQX	END=21363312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363313	.	G	.	.	LowGQX	.	GT	./.
chr2	21363314	.	A	.	.	LowGQX	END=21363337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363338	.	A	.	.	LowGQX	.	GT	./.
chr2	21363339	.	G	.	.	LowGQX	END=21363340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363341	.	G	.	.	LowGQX	.	GT	./.
chr2	21363342	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363343	.	G	.	.	LowGQX	.	GT	./.
chr2	21363344	.	T	.	.	LowGQX	END=21363348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21363349	.	C	.	.	LowGQX	END=21365497	GT	./.
chr2	21365498	.	C	.	.	LowGQX	END=21365560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21365561	.	C	.	.	LowGQX	.	GT	./.
chr2	21365562	.	T	.	.	LowGQX	END=21365570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21365571	.	T	.	.	LowGQX	.	GT	./.
chr2	21365572	.	C	.	.	LowGQX	END=21365764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	21365765	.	C	.	.	LowGQX	END=21366144	GT	./.
chr2	23729912	.	T	.	.	LowGQX	END=23730102	GT	./.
chr2	23746820	.	C	.	.	LowGQX	END=23746878	GT	./.
chr2	23746879	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	23746880	.	C	.	.	LowGQX	.	GT	./.
chr2	23746881	.	T	.	.	LowGQX	END=23746882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	23746883	.	T	.	.	LowGQX	.	GT	./.
chr2	23746884	.	G	.	.	LowGQX	END=23746901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	23746902	.	T	.	.	LowGQX	.	GT	./.
chr2	23746903	.	T	.	.	LowGQX	END=23746912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	23746913	.	T	.	.	LowGQX	.	GT	./.
chr2	23746914	.	G	.	.	LowGQX	END=23746922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	23746923	.	T	.	.	LowGQX	.	GT	./.
chr2	23746924	.	T	.	.	LowGQX	END=23746942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	23746943	.	T	.	.	LowGQX	.	GT	./.
chr2	23746944	.	A	.	.	LowGQX	END=23746961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	23755429	.	T	.	.	LowGQX	END=23755528	GT	./.
chr2	23785011	.	T	.	.	LowGQX	END=23785167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	23785168	.	T	.	.	LowGQX	END=23785360	GT	./.
chr2	23862008	.	G	.	.	LowGQX	END=23862187	GT	./.
chr2	23865207	.	G	.	.	LowGQX	END=23866064	GT	./.
chr2	23907268	.	G	.	.	LowGQX	END=23907407	GT	./.
chr2	23914543	.	G	.	.	LowGQX	END=23914592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	23914593	.	C	.	.	LowGQX	END=23914746	GT	./.
chr2	23916138	.	G	.	.	LowGQX	END=23916398	GT	./.
chr2	23918492	.	G	.	.	LowGQX	END=23918691	GT	./.
chr2	23918820	.	G	.	.	LowGQX	END=23919003	GT	./.
chr2	23919191	.	C	.	.	LowGQX	END=23919387	GT	./.
chr2	23926055	.	G	.	.	LowGQX	END=23926167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	23926168	.	G	.	.	LowGQX	END=23926249	GT	./.
chr2	23926588	.	G	.	.	LowGQX	END=23926733	GT	./.
chr2	23929350	.	G	.	.	LowGQX	END=23929392	GT	./.
chr2	23929393	.	T	.	.	LowGQX	END=23929394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	23929395	.	T	.	.	LowGQX	.	GT	./.
chr2	23929396	.	C	.	.	LowGQX	END=23929401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	23929402	.	T	.	.	LowGQX	.	GT	./.
chr2	23929403	.	G	.	.	LowGQX	END=23929487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	23929488	.	T	.	.	LowGQX	.	GT	./.
chr2	23929489	.	C	.	.	LowGQX	END=23929534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	23974835	.	G	.	.	LowGQX	END=23974986	GT	./.
chr2	23977048	.	C	.	.	LowGQX	END=23977217	GT	./.
chr2	23977516	.	C	.	.	LowGQX	END=23977641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	23977642	.	C	.	.	LowGQX	END=23977644	GT	./.
chr2	23980287	.	C	.	.	LowGQX	END=23980971	GT	./.
chr2	23985078	.	C	.	.	LowGQX	END=23985181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	23985182	.	A	.	.	LowGQX	END=23985194	GT	./.
chr2	23985195	.	T	.	.	LowGQX	END=23985216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	23988375	.	C	.	.	LowGQX	END=23988474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	23988475	.	A	.	.	LowGQX	.	GT	./.
chr2	23988476	.	A	.	.	LowGQX	END=23988483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	23988484	.	G	.	.	LowGQX	END=23988485	GT	./.
chr2	23988486	.	C	.	.	LowGQX	END=23988498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24005708	.	T	.	.	LowGQX	END=24005898	GT	./.
chr2	24008896	.	C	.	.	LowGQX	END=24009090	GT	./.
chr2	24009091	.	G	.	.	LowGQX	END=24009093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24011381	.	C	.	.	LowGQX	END=24011517	GT	./.
chr2	24021007	.	C	.	.	LowGQX	END=24021193	GT	./.
chr2	24033185	.	C	.	.	LowGQX	END=24033372	GT	./.
chr2	24042616	.	C	.	.	LowGQX	END=24042752	GT	./.
chr2	24046127	.	C	.	.	LowGQX	.	GT	./.
chr2	24046128	.	C	.	.	LowGQX	END=24046133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24046134	.	T	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	24046135	.	T	.	.	LowGQX	END=24046141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24046142	.	C	.	.	LowGQX	.	GT	./.
chr2	24046143	.	T	.	.	LowGQX	END=24046174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24046175	.	T	.	.	LowGQX	.	GT	./.
chr2	24046176	.	G	.	.	LowGQX	END=24046214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24046215	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	24046216	.	T	.	.	LowGQX	END=24046239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24046240	.	A	.	.	LowGQX	END=24046439	GT	./.
chr2	24051714	.	C	.	.	LowGQX	END=24051867	GT	./.
chr2	24055049	.	C	.	.	LowGQX	END=24055075	GT	./.
chr2	24055076	.	A	.	.	LowGQX	END=24055132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24055133	.	C	.	.	LowGQX	.	GT	./.
chr2	24055134	.	T	.	.	LowGQX	END=24055140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24055141	.	C	.	.	LowGQX	END=24055142	GT	./.
chr2	24055143	.	A	.	.	LowGQX	END=24055148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24056788	.	C	.	.	LowGQX	END=24056948	GT	./.
chr2	24079258	.	A	.	.	LowGQX	END=24079357	GT	./.
chr2	24080224	.	G	.	.	LowGQX	END=24080378	GT	./.
chr2	24086250	.	C	.	.	LowGQX	END=24086251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	24086252	.	T	.	.	LowGQX	END=24086425	GT	./.
chr2	24087678	.	C	.	.	LowGQX	END=24087778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24087779	.	T	.	.	LowGQX	END=24087837	GT	./.
chr2	24090704	.	C	.	.	LowGQX	END=24090816	GT	./.
chr2	24092447	.	T	.	.	LowGQX	END=24092631	GT	./.
chr2	24098628	.	T	.	.	LowGQX	END=24098786	GT	./.
chr2	24103508	.	C	.	.	LowGQX	END=24103556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24103557	.	T	.	.	LowGQX	END=24103667	GT	./.
chr2	24106435	.	G	.	.	LowGQX	END=24106438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24106439	.	G	.	.	LowGQX	.	GT	./.
chr2	24106440	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24106441	.	A	.	.	LowGQX	.	GT	./.
chr2	24106442	.	T	.	.	LowGQX	END=24106446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24106447	.	T	.	.	LowGQX	END=24106448	GT	./.
chr2	24106449	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24106450	.	T	.	.	LowGQX	.	GT	./.
chr2	24106451	.	A	.	.	LowGQX	END=24106453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24106454	.	T	.	.	LowGQX	.	GT	./.
chr2	24106455	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24106456	.	T	.	.	LowGQX	.	GT	./.
chr2	24106457	.	G	.	.	LowGQX	END=24106460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24106461	.	C	.	.	LowGQX	.	GT	./.
chr2	24106462	.	A	.	.	LowGQX	END=24106463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24106464	.	C	.	.	LowGQX	.	GT	./.
chr2	24106465	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24106466	.	A	.	.	LowGQX	END=24106467	GT	./.
chr2	24106468	.	A	.	.	LowGQX	END=24106483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24106484	.	G	.	.	LowGQX	.	GT	./.
chr2	24106485	.	G	.	.	LowGQX	END=24106507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24106508	.	G	.	.	LowGQX	END=24106530	GT	./.
chr2	24106531	.	A	.	.	LowGQX	END=24106534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24107634	.	C	.	.	LowGQX	END=24107743	GT	./.
chr2	24108596	.	C	.	.	LowGQX	END=24108699	GT	./.
chr2	24110701	.	C	.	.	LowGQX	END=24110703	GT	./.
chr2	24110704	.	A	.	.	LowGQX	END=24110710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24110711	.	A	.	.	LowGQX	.	GT	./.
chr2	24110712	.	G	.	.	LowGQX	END=24110732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24110733	.	G	.	.	LowGQX	END=24110735	GT	./.
chr2	24110736	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24110737	.	C	.	.	LowGQX	END=24110738	GT	./.
chr2	24110739	.	C	.	.	LowGQX	END=24110740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24110741	.	C	.	.	LowGQX	.	GT	./.
chr2	24110742	.	T	.	.	LowGQX	END=24110749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24110750	.	C	.	.	LowGQX	.	GT	./.
chr2	24110751	.	T	.	.	LowGQX	END=24110756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24110757	.	T	.	.	LowGQX	END=24110758	GT	./.
chr2	24110759	.	C	.	.	LowGQX	END=24110761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24110762	.	G	.	.	LowGQX	.	GT	./.
chr2	24110763	.	A	.	.	LowGQX	END=24110764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24110765	.	C	.	.	LowGQX	.	GT	./.
chr2	24110766	.	G	.	.	LowGQX	END=24110784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24110785	.	C	.	.	LowGQX	.	GT	./.
chr2	24110786	.	A	.	.	LowGQX	END=24110787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24110788	.	G	.	.	LowGQX	.	GT	./.
chr2	24110789	.	T	.	.	LowGQX	END=24110793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24110794	.	A	.	.	LowGQX	.	GT	./.
chr2	24110795	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24110796	.	T	.	.	LowGQX	END=24110797	GT	./.
chr2	24110798	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24110799	.	T	.	.	LowGQX	.	GT	./.
chr2	24110800	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24110801	.	C	.	.	LowGQX	.	GT	./.
chr2	24110802	.	A	.	.	LowGQX	END=24110803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24110804	.	G	.	.	LowGQX	.	GT	./.
chr2	24110805	.	A	.	.	LowGQX	END=24110807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24110808	.	G	.	.	LowGQX	END=24110809	GT	./.
chr2	24110810	.	T	.	.	LowGQX	END=24110811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24110812	.	C	.	.	LowGQX	END=24110813	GT	./.
chr2	24110814	.	C	.	.	LowGQX	END=24110817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24110818	.	T	.	.	LowGQX	.	GT	./.
chr2	24110819	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24110820	.	C	.	.	LowGQX	END=24110821	GT	./.
chr2	24110822	.	T	.	.	LowGQX	END=24110828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	24110829	.	C	.	.	LowGQX	.	GT	./.
chr2	24110830	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	24110831	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	24110832	.	C	.	.	LowGQX	END=24110837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	24110838	.	G	.	.	LowGQX	END=24110839	GT	./.
chr2	24110840	.	G	.	.	LowGQX	END=24110844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	24110845	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	24110846	.	C	.	.	LowGQX	.	GT	./.
chr2	24110847	.	T	.	.	LowGQX	END=24110849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	24110850	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	24110851	.	A	.	.	LowGQX	END=24110852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	24110853	.	G	.	.	LowGQX	END=24110855	GT	./.
chr2	24111139	.	A	.	.	LowGQX	END=24111294	GT	./.
chr2	24118688	.	C	.	.	LowGQX	END=24118840	GT	./.
chr2	24149389	.	T	.	.	LowGQX	END=24149640	GT	./.
chr2	24181156	.	T	.	.	LowGQX	END=24181195	GT	./.
chr2	24181196	.	A	.	.	LowGQX	END=24181248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24181249	.	C	.	.	LowGQX	.	GT	./.
chr2	24181250	.	T	.	.	LowGQX	END=24181255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24194144	.	A	.	.	LowGQX	END=24194162	GT	./.
chr2	24194163	.	C	.	.	LowGQX	END=24194286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24199837	.	A	.	.	LowGQX	END=24199947	GT	./.
chr2	24205764	.	A	.	.	LowGQX	END=24205905	GT	./.
chr2	24207541	.	A	.	.	LowGQX	END=24207730	GT	./.
chr2	24222530	.	G	.	.	LowGQX	END=24222739	GT	./.
chr2	24232905	.	A	.	.	LowGQX	END=24232922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24232923	.	C	.	.	LowGQX	END=24233064	GT	./.
chr2	24236154	.	G	.	.	LowGQX	END=24236172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24236173	.	C	.	.	LowGQX	.	GT	./.
chr2	24236174	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24236175	.	C	.	.	LowGQX	.	GT	./.
chr2	24236176	.	T	.	.	LowGQX	END=24236177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24236178	.	A	.	.	LowGQX	.	GT	./.
chr2	24236179	.	T	.	.	LowGQX	END=24236217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24236218	.	A	.	.	LowGQX	END=24236219	GT	./.
chr2	24236220	.	C	.	.	LowGQX	END=24236221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24236222	.	A	.	.	LowGQX	.	GT	./.
chr2	24236223	.	G	.	.	LowGQX	END=24236227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24236228	.	C	.	.	LowGQX	.	GT	./.
chr2	24236229	.	C	.	.	LowGQX	END=24236230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24236231	.	C	.	.	LowGQX	.	GT	./.
chr2	24236232	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24236233	.	A	.	.	LowGQX	.	GT	./.
chr2	24236234	.	G	.	.	LowGQX	END=24236237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24236238	.	C	.	.	LowGQX	.	GT	./.
chr2	24236239	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24236240	.	C	.	.	LowGQX	.	GT	./.
chr2	24236241	.	A	.	.	LowGQX	END=24236245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24236246	.	T	.	.	LowGQX	END=24236280	GT	./.
chr2	24238975	.	C	.	.	LowGQX	END=24239065	GT	./.
chr2	24239066	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24239067	.	A	.	.	LowGQX	.	GT	./.
chr2	24239068	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24239069	.	T	.	.	LowGQX	.	GT	./.
chr2	24239070	.	G	.	.	LowGQX	END=24239071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24239072	.	C	.	.	LowGQX	.	GT	./.
chr2	24239073	.	T	.	.	LowGQX	END=24239092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24239093	.	T	.	.	LowGQX	.	GT	./.
chr2	24239094	.	G	.	.	LowGQX	END=24239099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24239100	.	G	.	.	LowGQX	.	GT	./.
chr2	24239101	.	T	.	.	LowGQX	END=24239116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24239117	.	G	.	.	LowGQX	.	GT	./.
chr2	24239118	.	C	.	.	LowGQX	END=24239150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24239714	.	G	.	.	LowGQX	END=24239836	GT	./.
chr2	24239837	.	C	.	.	LowGQX	END=24239838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24240145	.	C	.	.	LowGQX	END=24240185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24240186	.	A	.	.	LowGQX	END=24240244	GT	./.
chr2	24240327	.	G	.	.	LowGQX	END=24240458	GT	./.
chr2	24244513	.	C	.	.	LowGQX	END=24244612	GT	./.
chr2	24244718	.	G	.	.	LowGQX	END=24244784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24244785	.	A	.	.	LowGQX	.	GT	./.
chr2	24244786	.	C	.	.	LowGQX	END=24244788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24244789	.	A	.	.	LowGQX	.	GT	./.
chr2	24244790	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24244791	.	C	.	.	LowGQX	.	GT	./.
chr2	24244792	.	C	.	.	LowGQX	END=24244799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24244800	.	A	.	.	LowGQX	.	GT	./.
chr2	24244801	.	G	.	.	LowGQX	END=24244807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24244808	.	A	.	.	LowGQX	.	GT	./.
chr2	24244809	.	T	.	.	LowGQX	END=24244840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24245242	.	C	.	.	LowGQX	END=24245394	GT	./.
chr2	24245682	.	C	.	.	LowGQX	END=24245781	GT	./.
chr2	24245999	.	G	.	.	LowGQX	END=24246003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	24246004	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	24246005	.	G	.	.	LowGQX	END=24246011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	24246012	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	24246013	.	T	.	.	LowGQX	END=24246028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24246029	.	T	.	.	LowGQX	.	GT	./.
chr2	24246030	.	G	.	.	LowGQX	END=24246033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24246034	.	T	.	.	LowGQX	.	GT	./.
chr2	24246035	.	G	.	.	LowGQX	END=24246060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24246061	.	T	.	.	LowGQX	.	GT	./.
chr2	24246062	.	G	.	.	LowGQX	END=24246090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24246091	.	T	.	.	LowGQX	.	GT	./.
chr2	24246092	.	G	.	.	LowGQX	END=24246095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24246096	.	T	.	.	LowGQX	END=24246109	GT	./.
chr2	24246452	.	G	.	.	LowGQX	END=24246465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	24246466	.	G	.	.	LowGQX	END=24246596	GT	./.
chr2	24246964	.	G	.	.	LowGQX	END=24246971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24246972	.	G	.	.	LowGQX	.	GT	./.
chr2	24246973	.	G	.	.	LowGQX	END=24247014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24247015	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	24247016	.	C	.	.	LowGQX	END=24247126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	24247127	.	G	T	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.727;QD=0.79;ReadPosRankSum=-0.727;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,1:4:30.28:30,0,75:60:3:0.250
chr2	24247128	.	C	.	.	LowGQX	END=24247145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	24248264	.	C	.	.	LowGQX	END=24248272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24248273	.	T	.	.	LowGQX	END=24248363	GT	./.
chr2	24253801	.	T	.	.	LowGQX	END=24254034	GT	./.
chr2	24255697	.	A	.	.	LowGQX	END=24255818	GT	./.
chr2	24255994	.	A	.	.	LowGQX	END=24256089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24256090	.	A	.	.	LowGQX	.	GT	./.
chr2	24256091	.	G	.	.	LowGQX	END=24256093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24260545	.	A	.	.	LowGQX	END=24261853	GT	./.
chr2	24261854	.	G	.	.	LowGQX	END=24261866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	24261867	.	C	.	.	LowGQX	.	GT	./.
chr2	24261868	.	T	.	.	LowGQX	END=24261869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	24261870	.	G	.	.	LowGQX	.	GT	./.
chr2	24261871	.	G	.	.	LowGQX	END=24261908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	24261909	.	G	.	.	LowGQX	.	GT	./.
chr2	24261910	.	T	.	.	LowGQX	END=24261958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	24261959	.	C	.	.	LowGQX	.	GT	./.
chr2	24261960	.	A	.	.	LowGQX	END=24261979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	24261980	.	T	.	.	LowGQX	.	GT	./.
chr2	24261981	.	C	.	.	LowGQX	END=24261986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	24261987	.	A	.	.	LowGQX	END=24262366	GT	./.
chr2	24272629	.	C	.	.	LowGQX	END=24272847	GT	./.
chr2	24276746	.	T	.	.	LowGQX	END=24276845	GT	./.
chr2	24276967	.	C	.	.	LowGQX	END=24277066	GT	./.
chr2	24283682	.	A	.	.	LowGQX	END=24283703	GT	./.
chr2	24283704	.	A	.	.	LowGQX	END=24283706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24283707	.	T	.	.	LowGQX	.	GT	./.
chr2	24283708	.	T	.	.	LowGQX	END=24283713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24283714	.	C	.	.	LowGQX	.	GT	./.
chr2	24283715	.	A	.	.	LowGQX	END=24283731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24283732	.	A	.	.	LowGQX	.	GT	./.
chr2	24283733	.	A	.	.	LowGQX	END=24283740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24283741	.	A	.	.	LowGQX	.	GT	./.
chr2	24283742	.	G	.	.	LowGQX	END=24283758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24283759	.	A	.	.	LowGQX	.	GT	./.
chr2	24283760	.	G	.	.	LowGQX	END=24283765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24283766	.	C	.	.	LowGQX	.	GT	./.
chr2	24283767	.	A	.	.	LowGQX	END=24283775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24283776	.	T	.	.	LowGQX	.	GT	./.
chr2	24283777	.	T	.	.	LowGQX	END=24283792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24283793	.	C	.	.	LowGQX	.	GT	./.
chr2	24283794	.	C	.	.	LowGQX	END=24283798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24285867	.	A	.	.	LowGQX	END=24285872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24285873	.	T	.	.	LowGQX	.	GT	./.
chr2	24285874	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24285875	.	T	.	.	LowGQX	.	GT	./.
chr2	24285876	.	C	.	.	LowGQX	END=24285889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24285890	.	T	.	.	LowGQX	.	GT	./.
chr2	24285891	.	G	.	.	LowGQX	END=24285933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24285934	.	A	.	.	LowGQX	.	GT	./.
chr2	24285935	.	T	.	.	LowGQX	END=24285946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24285947	.	A	.	.	LowGQX	END=24285949	GT	./.
chr2	24285950	.	G	.	.	LowGQX	END=24286045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	24286046	.	T	.	.	LowGQX	END=24286064	GT	./.
chr2	24290627	.	A	.	.	LowGQX	END=24290726	GT	./.
chr2	24291189	.	A	.	.	LowGQX	END=24291288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24291289	.	A	.	.	LowGQX	.	GT	./.
chr2	24291290	.	G	.	.	LowGQX	END=24291292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24291293	.	C	.	.	LowGQX	END=24291331	GT	./.
chr2	24296894	.	T	.	.	LowGQX	END=24297066	GT	./.
chr2	24299035	.	G	.	.	LowGQX	END=24299134	GT	./.
chr2	24300447	.	C	.	.	PASS	END=24300459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:59
chr2	24300460	.	G	.	.	PASS	END=24300488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	24300489	.	T	.	.	PASS	END=24300533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	24300534	.	T	.	.	PASS	END=24300594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	24300595	.	T	.	.	PASS	END=24300632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	24300633	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:72:99:60
chr2	24302312	.	A	.	.	PASS	END=24302321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr2	24302322	.	C	.	.	PASS	END=24302413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr2	24302414	.	C	.	.	PASS	END=24302421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	24302422	.	A	.	.	PASS	END=24302433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr2	24302434	.	A	.	.	PASS	END=24302449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr2	24302450	.	T	.	.	PASS	END=24302452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:60
chr2	24302453	.	A	.	.	PASS	END=24302472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr2	24302473	.	T	.	.	PASS	END=24302485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	24302486	.	T	.	.	PASS	END=24302511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	24302512	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr2	24303645	.	A	.	.	PASS	END=24303670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	24303671	.	G	.	.	PASS	END=24303708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr2	24303709	.	G	.	.	PASS	END=24303767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr2	24303768	.	C	.	.	PASS	END=24303849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr2	24303850	.	A	.	.	PASS	END=24303863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr2	24303864	.	T	.	.	PASS	END=24303878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	24303879	.	A	.	.	PASS	END=24303903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	24305753	.	A	.	.	PASS	END=24305846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	24305847	.	A	.	.	PASS	END=24305987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	24305988	.	C	.	.	PASS	END=24306011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	24306012	.	T	.	.	PASS	END=24306024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	24307057	.	A	.	.	PASS	END=24307071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	24307072	.	G	.	.	PASS	END=24307090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	24307091	.	C	.	.	PASS	END=24307193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	24307194	.	C	.	.	PASS	END=24307198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	24338418	.	A	.	.	LowGQX	END=24338517	GT	./.
chr2	24342445	.	A	.	.	LowGQX	END=24342554	GT	./.
chr2	24344031	.	A	.	.	LowGQX	END=24344172	GT	./.
chr2	24345237	.	A	.	.	LowGQX	END=24345387	GT	./.
chr2	24345388	.	G	.	.	LowGQX	END=24345407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	24347231	.	A	.	.	LowGQX	END=24347330	GT	./.
chr2	24357918	.	A	.	.	LowGQX	END=24358072	GT	./.
chr2	24360778	.	G	.	.	LowGQX	END=24360977	GT	./.
chr2	24362230	.	C	.	.	LowGQX	END=24362329	GT	./.
chr2	24369612	.	T	.	.	LowGQX	END=24369711	GT	./.
chr2	24369799	.	G	.	.	LowGQX	END=24369956	GT	./.
chr2	24384375	.	G	.	.	LowGQX	END=24384534	GT	./.
chr2	24387067	.	G	.	.	LowGQX	END=24387204	GT	./.
chr2	24388222	.	A	.	.	LowGQX	END=24388309	GT	./.
chr2	24388310	.	G	.	.	LowGQX	END=24388321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24390467	.	A	.	.	LowGQX	END=24390516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24390517	.	G	A	47.39	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=23.69;SB=-38.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:79,6,0:60:6:1.000
chr2	24390518	.	C	.	.	LowGQX	END=24390566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	24392196	.	C	.	.	LowGQX	END=24392295	GT	./.
chr2	24398288	.	C	.	.	LowGQX	END=24398446	GT	./.
chr2	24400656	.	A	.	.	LowGQX	END=24400755	GT	./.
chr2	24401980	.	A	.	.	LowGQX	END=24402135	GT	./.
chr2	24406148	.	T	.	.	LowGQX	END=24406247	GT	./.
chr2	24406362	.	A	.	.	LowGQX	END=24406516	GT	./.
chr2	24413279	.	A	.	.	LowGQX	END=24413308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24413309	.	A	.	.	LowGQX	.	GT	./.
chr2	24413310	.	A	.	.	LowGQX	END=24413441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24413442	.	G	.	.	LowGQX	.	GT	./.
chr2	24413443	.	G	.	.	LowGQX	END=24413502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24423428	.	G	.	.	LowGQX	END=24423610	GT	./.
chr2	24426493	.	C	.	.	PASS	END=24426608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	24426609	.	T	.	.	PASS	END=24426654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	24427046	.	C	.	.	PASS	END=24427065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr2	24427066	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:72:60
chr2	24427067	.	T	.	.	PASS	END=24427094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr2	24427095	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:75:60
chr2	24427096	.	T	.	.	PASS	END=24427103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr2	24427104	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:75:60
chr2	24427105	.	G	.	.	PASS	END=24427137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr2	24427138	.	C	.	.	PASS	END=24427178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:90:60
chr2	24427179	.	A	.	.	PASS	END=24427299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:98:60
chr2	24427300	.	A	.	.	PASS	END=24427320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	24427321	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:63:60
chr2	24427322	.	A	.	.	PASS	END=24427328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr2	24427329	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:69:60
chr2	24427330	.	A	.	.	PASS	END=24427336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr2	24427337	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:56:60
chr2	24427338	.	G	.	.	PASS	END=24427348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr2	24427349	.	T	.	.	PASS	END=24427362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	24427363	.	A	.	.	PASS	END=24427381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr2	24427382	.	T	.	.	PASS	END=24427383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr2	24427384	.	G	.	.	PASS	END=24427385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	24427386	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:39:60
chr2	24427387	.	C	.	.	PASS	END=24427397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr2	24427398	.	A	.	.	PASS	END=24427401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	24427402	.	C	.	.	PASS	END=24427412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr2	24427413	.	G	.	.	PASS	END=24427415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	24427416	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:1:60
chr2	24427417	.	C	.	.	PASS	END=24427421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	24427422	.	G	.	.	LowGQX	END=24427423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	24427424	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	24427425	.	A	.	.	LowGQX	END=24427433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	24427434	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr2	24427435	.	T	.	.	LowGQX	END=24427436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	24427437	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr2	24427438	.	G	.	.	LowGQX	END=24427457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	24427458	.	A	.	.	LowGQX	END=24427491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24427492	.	A	.	.	LowGQX	END=24427671	GT	./.
chr2	24427672	.	C	.	.	LowGQX	END=24427675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	24427676	.	G	.	.	LowGQX	END=24427687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	24428075	.	G	.	.	PASS	END=24428143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	24428144	.	G	.	.	PASS	END=24428174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	24429082	.	A	.	.	LowGQX	END=24429181	GT	./.
chr2	24431098	.	C	.	.	PASS	END=24431183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	24431184	.	C	T	1202.91	PASS	BaseQRankSum=1.004;DP=147;Dels=0.00;FS=4.177;HRun=0;HaplotypeScore=12.3627;MQ=60;MQ0=0;MQRankSum=0.348;QD=8.18;ReadPosRankSum=0.411;SB=-621.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:90,57:147:99:1233,0,2276:60:99:0.388
chr2	24431185	.	G	.	.	PASS	END=24431197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr2	24431967	.	A	.	.	PASS	END=24431982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:81:60
chr2	24431983	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:66:60
chr2	24431984	.	T	.	.	PASS	END=24431986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	24431987	.	G	.	.	PASS	END=24431995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	24431996	.	G	.	.	PASS	END=24432092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	24432685	.	A	.	.	PASS	END=24432707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	24432708	.	A	.	.	PASS	END=24432793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr2	24432794	.	T	.	.	PASS	END=24432838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	24432839	.	A	G	2179.58	PASS	BaseQRankSum=-0.116;DP=147;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=10.5618;MQ=60;MQ0=0;MQRankSum=0.818;QD=14.83;ReadPosRankSum=0.485;SB=-632.26	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:68,78:147:99:2210,0,1919:60:99:0.534
chr2	24432840	.	T	.	.	PASS	END=24432866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	24432867	.	C	.	.	PASS	END=24432904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	24433647	.	A	.	.	PASS	END=24433660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	24433661	.	T	.	.	PASS	END=24433694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	24433695	.	C	.	.	PASS	END=24433791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr2	24433792	.	G	.	.	PASS	END=24433808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	24433809	.	T	.	.	PASS	END=24433818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	24435517	.	A	.	.	PASS	END=24435595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	24435596	.	A	.	.	PASS	END=24435610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	24435611	.	C	.	.	PASS	END=24435645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr2	24435646	.	A	.	.	PASS	END=24435656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	24435657	.	C	.	.	PASS	END=24435675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr2	24438916	.	A	.	.	PASS	END=24438962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	24438963	.	T	.	.	PASS	END=24439023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr2	24439024	.	A	.	.	PASS	END=24439101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	24439102	.	C	.	.	PASS	END=24439103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	24440774	.	A	.	.	PASS	END=24440787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	24440788	.	G	.	.	PASS	END=24440799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	24440800	.	A	.	.	PASS	END=24440871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	24440872	.	T	.	.	PASS	END=24440884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	24443762	.	C	.	.	PASS	END=24443782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	24443783	.	C	.	.	PASS	END=24443835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	24443836	.	G	.	.	PASS	END=24443897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	24443898	.	T	.	.	PASS	END=24443933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	24443934	.	C	.	.	PASS	END=24443981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	24468996	.	A	.	.	PASS	END=24469020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	24469021	.	G	.	.	PASS	END=24469039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	24469040	.	T	.	.	PASS	END=24469144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr2	24469145	.	C	.	.	PASS	END=24469170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	24469171	.	A	.	.	PASS	END=24469172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	24469173	.	A	.	.	PASS	END=24469189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	24469190	.	C	.	.	PASS	END=24469191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	24469664	.	A	.	.	PASS	END=24469672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr2	24469673	.	A	.	.	PASS	END=24469689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr2	24469690	.	T	.	.	PASS	END=24469694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr2	24469695	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:65:60
chr2	24469696	.	T	.	.	PASS	END=24469754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr2	24469755	.	C	.	.	PASS	END=24469756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:53:60
chr2	24469757	.	T	.	.	PASS	END=24469761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr2	24469762	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:68:60
chr2	24469763	.	C	.	.	PASS	END=24469764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr2	24471496	.	A	.	.	PASS	END=24471544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	24471545	.	A	.	.	PASS	END=24471553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	24471554	.	G	.	.	PASS	END=24471621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	24471679	.	A	.	.	PASS	END=24471704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	24471705	.	C	.	.	PASS	END=24471778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	24475212	.	A	.	.	PASS	END=24475228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	24475229	.	T	.	.	PASS	END=24475311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	24475312	.	T	.	.	PASS	END=24475369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	24475370	.	T	.	.	PASS	END=24475381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	24475382	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:95:99:60
chr2	24477219	.	A	.	.	PASS	END=24477246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:59
chr2	24477247	.	G	.	.	PASS	END=24477318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:59
chr2	24480755	.	A	.	.	PASS	END=24480781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	24480782	.	G	.	.	PASS	END=24480853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	24480854	.	G	.	.	PASS	END=24480938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	24480939	.	T	.	.	PASS	END=24480964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	24483973	.	A	.	.	PASS	END=24483983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	24483984	.	A	.	.	PASS	END=24484009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	24484010	.	C	.	.	PASS	END=24484059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	24484060	.	T	.	.	PASS	END=24484121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	24484428	.	A	.	.	PASS	END=24484462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	24484463	.	G	.	.	PASS	END=24484595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	24484596	.	C	.	.	PASS	END=24484613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	24493538	.	A	.	.	PASS	END=24493639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	24494633	.	A	.	.	PASS	END=24494648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	24494649	.	G	.	.	PASS	END=24494660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	24494661	.	T	.	.	PASS	END=24494692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	24494693	.	C	.	.	PASS	END=24494741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	24494742	.	T	.	.	PASS	END=24494745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	24494746	.	G	.	216.53	PASS	DP=118;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:91:118:99:60:99
chr2	24494747	.	T	.	.	PASS	END=24494751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	24494752	.	C	.	198.51	PASS	DP=92;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:67:92:99:60:99
chr2	24494753	.	T	.	.	PASS	END=24494780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	24494781	.	C	.	.	PASS	END=24494812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	24498580	.	A	.	.	PASS	END=24498697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	24498698	.	G	.	.	PASS	END=24498718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr2	24498719	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:57:60
chr2	24498720	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:93:60
chr2	24507623	.	G	.	.	PASS	END=24507710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	24507711	.	C	.	.	PASS	END=24507722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	24509079	.	A	.	.	PASS	END=24509104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	24509105	.	C	.	.	PASS	END=24509127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	24509128	.	T	.	.	PASS	END=24509171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	24509172	.	A	.	.	PASS	END=24509199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr2	24509200	.	G	.	.	PASS	END=24509275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	24509276	.	A	.	.	PASS	END=24509278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	24516495	.	A	.	.	PASS	END=24516500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr2	24516501	.	C	.	.	PASS	END=24516512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	24516513	.	T	.	.	PASS	END=24516528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr2	24516529	.	A	.	.	PASS	END=24516543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr2	24516544	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:54:60
chr2	24516545	.	T	.	.	PASS	END=24516569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr2	24516570	.	G	.	.	PASS	END=24516644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:95:60
chr2	24516645	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:66:60
chr2	24516646	.	T	.	.	PASS	END=24516650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	24518531	.	A	.	.	PASS	END=24518633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	24518634	.	C	.	.	PASS	END=24518648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	24518649	.	C	.	.	PASS	END=24518674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	24518675	.	T	.	.	PASS	END=24518683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr2	24518684	.	A	.	.	PASS	END=24518703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	24518704	.	C	.	.	PASS	END=24518710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr2	24521532	.	A	.	.	PASS	END=24521611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	24521612	.	A	.	.	PASS	END=24521661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	24521662	.	G	.	.	PASS	END=24521685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	24522776	.	A	.	.	PASS	END=24522851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	24522852	.	T	.	.	PASS	END=24522922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	24522923	.	T	.	.	PASS	END=24523042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	24524016	.	G	.	.	PASS	END=24524035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	24524036	.	C	.	.	PASS	END=24524115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	24524832	.	A	.	.	PASS	END=24524887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:92:60
chr2	24524888	.	G	.	.	PASS	END=24524957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	24524958	.	C	T	847.87	PASS	BaseQRankSum=3.110;DP=72;Dels=0.00;FS=8.653;HRun=0;HaplotypeScore=10.6248;MQ=60;MQ0=0;MQRankSum=0.969;QD=11.78;ReadPosRankSum=0.068;SB=-522.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:37,35:72:99:878,0,1015:60:99:0.486
chr2	24524959	.	G	.	.	PASS	END=24525011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	24526650	.	A	.	.	PASS	END=24526679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	24526680	.	A	.	.	PASS	END=24526749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	24531484	.	A	.	.	PASS	END=24531626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr2	24531627	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:235:99:60
chr2	24531734	.	C	.	.	PASS	END=24531757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	24531758	.	C	.	.	PASS	END=24531777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	24531778	.	G	.	.	PASS	END=24531801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	24531802	.	T	.	.	PASS	END=24531809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	24531810	.	G	.	.	PASS	END=24531818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:99:60
chr2	24531819	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:66:60
chr2	24531820	.	T	.	.	PASS	END=24531833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:84:60
chr2	24533151	.	A	.	.	PASS	END=24533186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	24533187	.	T	.	.	PASS	END=24533195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	24533196	.	T	.	.	PASS	END=24533251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	24533356	.	A	.	.	PASS	END=24533471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr2	24533472	.	T	.	.	PASS	END=24533534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	24533535	.	T	.	.	PASS	END=24533563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	24535079	.	A	.	.	PASS	END=24535113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	24535114	.	G	.	.	PASS	END=24535224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr2	24535225	.	T	.	.	PASS	END=24535246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	24536311	.	A	.	.	PASS	END=24536325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr2	24536326	.	T	.	.	PASS	END=24536410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr2	24537998	.	A	.	.	PASS	END=24538020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr2	24538021	.	G	.	.	PASS	END=24538097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	24550886	.	T	.	.	PASS	END=24550909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:78:60
chr2	24550910	.	A	.	.	PASS	END=24550981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	24550982	.	C	.	.	PASS	END=24550985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	24881542	.	T	.	.	PASS	END=24881578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	24881579	.	T	.	.	PASS	END=24881641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	24888616	.	A	.	.	PASS	END=24888628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	24888629	.	G	.	.	PASS	END=24888759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr2	24888760	.	C	.	.	PASS	END=24888768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	24888769	.	A	.	.	PASS	END=24888786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	24896233	.	A	.	.	PASS	END=24896258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr2	24896259	.	T	.	.	PASS	END=24896318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr2	24896319	.	C	.	.	PASS	END=24896343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr2	24896344	.	C	.	.	PASS	END=24896358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr2	24896359	.	T	.	.	PASS	END=24896382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr2	24896383	.	G	.	.	PASS	END=24896388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr2	24896389	.	T	G	218.95	PASS	BaseQRankSum=-2.233;DP=22;Dels=0.00;FS=7.025;HRun=2;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-0.722;QD=9.95;ReadPosRankSum=-0.722;SB=-76.91	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:11,11:22:99:249,0,337:60:99:0.500
chr2	24896390	.	T	.	.	PASS	END=24896392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr2	24905798	.	T	.	.	PASS	END=24905903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	24905904	.	A	.	.	PASS	END=24905926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr2	24905927	.	G	C	5231.49	PASS	DP=176;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=20.0837;MQ=60;MQ0=0;QD=29.72;SB=-2461.52	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,174:176:99:5231,406,0:60:99:1.000
chr2	24905928	.	A	.	.	PASS	END=24905999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	24914348	.	A	.	.	PASS	END=24914443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	24914444	.	C	.	.	PASS	END=24914531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	24916119	.	A	.	.	PASS	END=24916214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	24916215	.	A	.	.	PASS	END=24916218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	24920525	.	A	.	.	PASS	END=24920533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	24920534	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:75:60
chr2	24920535	.	A	.	.	PASS	END=24920551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	24920552	.	T	.	.	PASS	END=24920595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	24920596	.	G	.	.	PASS	END=24920638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	24920639	.	A	.	.	PASS	END=24920665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	24920666	.	A	.	.	PASS	END=24920669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr2	24927953	.	A	.	.	PASS	END=24927982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	24927983	.	C	.	.	PASS	END=24928027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	24928028	.	C	.	.	PASS	END=24928065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	24928066	.	T	.	.	PASS	END=24928104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	24929435	.	A	.	.	PASS	END=24929479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	24929480	.	A	.	.	PASS	END=24929575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	24929576	.	A	.	.	PASS	END=24929651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr2	24929652	.	A	.	.	PASS	END=24929822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr2	24929823	.	C	.	.	PASS	END=24929934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr2	24929935	.	T	.	.	PASS	END=24930023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr2	24930024	.	G	.	.	PASS	END=24930131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr2	24930132	.	C	.	.	PASS	END=24930284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr2	24930285	.	A	.	.	PASS	END=24930477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr2	24930478	.	C	.	.	PASS	END=24930656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr2	24930657	.	T	.	.	PASS	END=24930759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	24933758	.	A	.	.	PASS	END=24933798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	24933799	.	G	.	.	PASS	END=24933828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	24933829	.	G	.	.	PASS	END=24933960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	24933961	.	A	.	.	PASS	END=24933982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	24949456	.	A	.	.	PASS	END=24949509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	24949510	.	A	.	.	PASS	END=24949569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	24949570	.	A	.	.	PASS	END=24949577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	24951175	.	A	.	.	PASS	END=24951192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	24951193	.	C	.	.	PASS	END=24951238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr2	24951239	.	A	.	.	PASS	END=24951327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	24951328	.	A	.	.	PASS	END=24951347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	24952368	.	A	.	.	PASS	END=24952398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	24952399	.	A	.	.	PASS	END=24952489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr2	24952490	.	A	.	.	PASS	END=24952583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr2	24952584	.	C	.	.	PASS	END=24952661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	24952662	.	A	.	.	PASS	END=24952686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	24962299	.	A	.	.	PASS	END=24962335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	24962336	.	G	.	.	PASS	END=24962396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	24962397	.	C	.	.	PASS	END=24962404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:85:60
chr2	24964651	.	A	.	.	PASS	END=24964686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	24964687	.	A	.	.	PASS	END=24964816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	24964817	.	C	.	.	PASS	END=24964869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	24964870	.	G	.	.	PASS	END=24964958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr2	24964959	.	A	.	.	PASS	END=24965020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr2	24965021	.	G	.	.	PASS	END=24965057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	24974849	.	A	.	.	PASS	END=24974892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	24974893	.	G	.	.	PASS	END=24974944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr2	24974945	.	T	G	5747.08	PASS	BaseQRankSum=2.319;DP=189;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.4662;MQ=60;MQ0=0;MQRankSum=-0.830;QD=30.41;ReadPosRankSum=-0.085;SB=-3402.86	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,186:189:99:5747,436,0:60:99:0.989
chr2	24974946	.	C	.	.	PASS	END=24975023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr2	24975024	.	A	.	.	PASS	END=24975027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	24980780	.	T	.	.	PASS	END=24980791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:93:60
chr2	24980792	.	C	.	.	PASS	END=24980811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	24980812	.	A	.	.	PASS	END=24980841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	24980842	.	T	.	.	PASS	END=24980857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	24980858	.	G	.	.	PASS	END=24980873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	24980874	.	C	.	.	PASS	END=24980918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	24980919	.	C	.	.	PASS	END=24980995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr2	24980996	.	C	.	.	PASS	END=24981009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	24981010	.	T	.	.	PASS	END=24981027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	24985551	.	A	.	.	PASS	END=24985564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	24985565	.	C	.	.	PASS	END=24985589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	24985590	.	A	.	.	PASS	END=24985650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	24990921	.	A	.	.	PASS	END=24990998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	24990999	.	G	.	.	PASS	END=24991020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	24991088	.	A	.	.	PASS	END=24991183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	24991184	.	C	.	.	PASS	END=24991227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	24991228	.	A	.	.	PASS	END=24991262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	25013278	.	A	.	.	LowGQX	END=25013412	GT	./.
chr2	25013413	.	G	.	.	LowGQX	END=25013452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25015993	.	A	.	.	LowGQX	END=25016092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25016093	.	A	.	.	LowGQX	.	GT	./.
chr2	25016094	.	A	.	.	LowGQX	END=25016105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25016106	.	C	.	.	LowGQX	.	GT	./.
chr2	25016107	.	A	.	.	LowGQX	END=25016129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25016130	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	25016131	.	G	.	.	LowGQX	END=25016152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25016153	.	G	.	.	LowGQX	.	GT	./.
chr2	25016154	.	T	.	.	LowGQX	END=25016155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25016156	.	A	.	.	LowGQX	.	GT	./.
chr2	25016157	.	C	.	.	LowGQX	END=25016168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25016169	.	T	.	.	LowGQX	.	GT	./.
chr2	25016170	.	A	.	.	LowGQX	END=25016200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25016201	.	C	.	.	LowGQX	.	GT	./.
chr2	25016202	.	C	.	.	LowGQX	END=25016209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25016210	.	T	.	.	LowGQX	.	GT	./.
chr2	25016211	.	G	.	.	LowGQX	END=25016223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25016224	.	G	.	.	LowGQX	.	GT	./.
chr2	25016225	.	C	.	.	LowGQX	END=25016248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25016307	.	A	.	.	LowGQX	END=25016406	GT	./.
chr2	25016762	.	T	.	.	LowGQX	END=25016861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25022542	.	A	.	.	LowGQX	END=25022715	GT	./.
chr2	25037243	.	A	.	.	LowGQX	END=25037251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25037252	.	C	.	.	LowGQX	.	GT	./.
chr2	25037253	.	A	.	.	LowGQX	END=25037256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25037257	.	A	.	.	LowGQX	.	GT	./.
chr2	25037258	.	T	.	.	LowGQX	END=25037260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25037261	.	C	.	.	LowGQX	.	GT	./.
chr2	25037262	.	C	.	.	LowGQX	END=25037270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25037271	.	A	.	.	LowGQX	.	GT	./.
chr2	25037272	.	C	.	.	LowGQX	END=25037274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25037275	.	A	.	.	LowGQX	END=25037276	GT	./.
chr2	25037277	.	C	.	.	LowGQX	END=25037280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25037281	.	A	.	.	LowGQX	.	GT	./.
chr2	25037282	.	C	.	.	LowGQX	END=25037286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25037287	.	G	.	.	LowGQX	.	GT	./.
chr2	25037288	.	A	.	.	LowGQX	END=25037289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25037290	.	A	.	.	LowGQX	.	GT	./.
chr2	25037291	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25037292	.	C	.	.	LowGQX	END=25037293	GT	./.
chr2	25037294	.	A	.	.	LowGQX	END=25037298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25037299	.	C	.	.	LowGQX	.	GT	./.
chr2	25037300	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25037301	.	A	.	.	LowGQX	.	GT	./.
chr2	25037302	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25037303	.	A	.	.	LowGQX	.	GT	./.
chr2	25037304	.	A	.	.	LowGQX	END=25037305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25037306	.	C	.	.	LowGQX	.	GT	./.
chr2	25037307	.	A	.	.	LowGQX	END=25037311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25037312	.	A	.	.	LowGQX	.	GT	./.
chr2	25037313	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25037314	.	G	.	.	LowGQX	.	GT	./.
chr2	25037315	.	A	.	.	LowGQX	END=25037317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25037318	.	A	.	.	LowGQX	.	GT	./.
chr2	25037319	.	A	.	.	LowGQX	END=25037326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25037327	.	A	.	.	LowGQX	END=25037364	GT	./.
chr2	25038364	.	A	.	.	LowGQX	END=25038627	GT	./.
chr2	25039513	.	A	.	.	LowGQX	END=25039688	GT	./.
chr2	25040537	.	A	.	.	LowGQX	END=25040621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25040622	.	T	.	.	LowGQX	END=25040677	GT	./.
chr2	25042788	.	G	.	.	PASS	END=25042796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	25042797	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:69:60
chr2	25042798	.	C	.	.	PASS	END=25042809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	25042810	.	G	.	.	PASS	END=25042831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	25042832	.	G	.	.	PASS	END=25042882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	25042883	.	A	.	.	PASS	END=25042961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	25042962	.	T	.	.	PASS	END=25042983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	25042984	.	C	.	.	PASS	END=25042985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	25043591	.	A	.	.	PASS	END=25043618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	25043619	.	A	.	.	PASS	END=25043716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	25043717	.	C	.	.	PASS	END=25043719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	25044384	.	A	.	.	PASS	END=25044404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	25044405	.	A	.	.	PASS	END=25044501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	25044502	.	T	.	.	PASS	END=25044511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	25045378	.	A	.	.	PASS	END=25045423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	25045424	.	C	.	.	PASS	END=25045500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	25045501	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:98:99:60
chr2	25046076	.	A	.	.	PASS	END=25046089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	25046090	.	T	C	1275.87	PASS	BaseQRankSum=-1.522;DP=142;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=21.9896;MQ=60;MQ0=0;MQRankSum=-0.320;QD=8.99;ReadPosRankSum=1.539;SB=-711.59	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:78,61:142:99:1306,0,1947:60:99:0.439
chr2	25046091	.	G	.	.	PASS	END=25046145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	25046146	.	C	.	.	PASS	END=25046160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	25046161	.	C	.	.	PASS	END=25046213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	25046214	.	C	.	.	PASS	END=25046232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	25046233	.	A	.	.	PASS	END=25046255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	25047245	.	A	.	.	PASS	END=25047270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	25047271	.	G	.	.	PASS	END=25047293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	25047294	.	G	.	.	PASS	END=25047407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	25048852	.	T	.	.	PASS	END=25048866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	25048867	.	C	.	.	PASS	END=25048892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	25048893	.	G	.	.	PASS	END=25048971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	25048972	.	T	.	.	PASS	END=25049004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	25049005	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:72:99:60
chr2	25050397	.	G	.	.	PASS	END=25050431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	25050432	.	C	.	.	PASS	END=25050496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	25050769	.	A	.	.	PASS	END=25050849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	25050850	.	C	.	.	PASS	END=25050976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	25050977	.	T	C	2520.49	PASS	BaseQRankSum=4.334;DP=194;Dels=0.00;FS=4.829;HRun=0;HaplotypeScore=13.2569;MQ=60;MQ0=0;MQRankSum=-2.352;QD=12.99;ReadPosRankSum=-0.534;SB=-902.62	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:92,102:194:99:2550,0,1913:60:99:0.526
chr2	25050978	.	T	.	.	PASS	END=25051016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr2	25051017	.	T	.	.	PASS	END=25051032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	25053576	.	A	.	.	PASS	END=25053617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr2	25053618	.	A	.	.	PASS	END=25053696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr2	25054525	.	T	.	.	PASS	END=25054597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	25054598	.	G	.	.	PASS	END=25054617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	25054618	.	C	.	.	PASS	END=25054624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	25057352	.	A	.	.	PASS	END=25057366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	25057367	.	G	.	.	PASS	END=25057383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	25057384	.	G	.	.	PASS	END=25057409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr2	25057410	.	G	.	.	PASS	END=25057517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:252:99:60
chr2	25057661	.	A	.	.	PASS	END=25057761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	25057762	.	A	.	.	PASS	END=25057785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	25057786	.	G	.	.	PASS	END=25057805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	25057806	.	C	.	.	PASS	END=25057807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	25059784	.	A	.	.	PASS	END=25059813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	25059814	.	G	.	.	PASS	END=25059916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	25061312	.	A	.	.	PASS	END=25061328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	25061329	.	A	.	.	PASS	END=25061446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	25061447	.	T	.	.	PASS	END=25061469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	25061470	.	G	.	.	PASS	END=25061479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	25061480	.	A	.	.	PASS	END=25061491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	25061492	.	C	.	.	PASS	END=25061493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	25061699	.	G	.	.	LowGQX	END=25061724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25061725	.	A	.	.	LowGQX	END=25061798	GT	./.
chr2	25062719	.	T	.	.	PASS	END=25062839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	25062840	.	G	.	.	PASS	END=25062858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	25062859	.	A	.	.	PASS	END=25062880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	25062881	.	T	.	.	PASS	END=25062902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	25063381	.	G	.	.	LowGQX	END=25063480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	25064126	.	A	.	.	PASS	END=25064150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	25064151	.	C	.	.	PASS	END=25064168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	25064169	.	G	.	.	PASS	END=25064192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr2	25064193	.	G	A	1791.66	PASS	BaseQRankSum=2.434;DP=165;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=10.5113;MQ=60;MQ0=0;MQRankSum=0.368;QD=10.86;ReadPosRankSum=0.623;SB=-780.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:89,76:165:99:1822,0,2273:60:99:0.461
chr2	25064194	.	G	.	.	PASS	END=25064257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	25064423	.	A	.	.	PASS	END=25064494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	25064495	.	G	.	.	PASS	END=25064527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	25064528	.	A	.	.	PASS	END=25064538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr2	25065121	.	A	.	.	PASS	END=25065144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	25065145	.	T	.	.	PASS	END=25065164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	25065165	.	T	.	.	PASS	END=25065253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	25065254	.	C	.	.	PASS	END=25065255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	25095437	.	A	.	.	PASS	END=25095538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:246:99:60
chr2	25095539	.	A	.	.	PASS	END=25095570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	25095571	.	G	.	.	PASS	END=25095590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	25100746	.	G	.	.	LowGQX	END=25100804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25100805	.	T	.	.	LowGQX	END=25100845	GT	./.
chr2	25141180	.	A	.	.	PASS	END=25141191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr2	25141192	.	A	.	.	PASS	END=25141193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr2	25141194	.	C	.	.	PASS	END=25141200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	25141201	.	C	.	.	PASS	END=25141212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:59
chr2	25141213	.	T	.	.	PASS	END=25141236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr2	25141237	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:53:60
chr2	25141238	.	C	.	.	PASS	END=25141250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	25141251	.	C	.	.	PASS	END=25141260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	25141261	.	A	.	.	PASS	END=25141287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	25141288	.	A	.	.	PASS	END=25141360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	25141361	.	T	.	.	PASS	END=25141411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	25141412	.	C	.	.	PASS	END=25141436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	25141437	.	G	.	.	PASS	END=25141525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr2	25141526	.	C	.	.	PASS	END=25141537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr2	25141538	.	A	G	2678.21	PASS	BaseQRankSum=-0.253;DP=218;Dels=0.00;FS=4.185;HRun=3;HaplotypeScore=25.8282;MQ=60;MQ0=0;MQRankSum=-1.725;QD=12.29;ReadPosRankSum=-1.052;SB=-1140.86	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:105,111:218:99:2708,0,2650:60:99:0.514
chr2	25141539	.	A	.	.	PASS	END=25141610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	25141611	.	C	.	.	PASS	END=25141657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr2	25141658	.	G	.	.	PASS	END=25141817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr2	25141818	.	C	.	.	PASS	END=25141858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr2	25170483	.	T	.	.	LowGQX	END=25170517	GT	./.
chr2	25170518	.	A	.	.	LowGQX	END=25170528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170529	.	C	.	.	LowGQX	.	GT	./.
chr2	25170530	.	T	.	.	LowGQX	END=25170533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170534	.	A	.	.	LowGQX	.	GT	./.
chr2	25170535	.	A	.	.	LowGQX	END=25170536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170537	.	G	.	.	LowGQX	END=25170538	GT	./.
chr2	25170539	.	A	.	.	LowGQX	END=25170540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170541	.	C	.	.	LowGQX	.	GT	./.
chr2	25170542	.	T	.	.	LowGQX	END=25170545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170546	.	C	.	.	LowGQX	.	GT	./.
chr2	25170547	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170548	.	G	.	.	LowGQX	.	GT	./.
chr2	25170549	.	C	.	.	LowGQX	END=25170557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170558	.	A	.	.	LowGQX	.	GT	./.
chr2	25170559	.	C	.	.	LowGQX	END=25170564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170565	.	T	.	.	LowGQX	.	GT	./.
chr2	25170566	.	G	.	.	LowGQX	END=25170568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170569	.	A	.	.	LowGQX	END=25170572	GT	./.
chr2	25170573	.	T	.	.	LowGQX	END=25170574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170575	.	A	.	.	LowGQX	END=25170577	GT	./.
chr2	25170578	.	A	.	.	LowGQX	END=25170579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170580	.	G	.	.	LowGQX	END=25170581	GT	./.
chr2	25170582	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170583	.	C	.	.	LowGQX	END=25170584	GT	./.
chr2	25170585	.	G	.	.	LowGQX	END=25170586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170587	.	A	.	.	LowGQX	.	GT	./.
chr2	25170588	.	A	.	.	LowGQX	END=25170590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170591	.	T	.	.	LowGQX	.	GT	./.
chr2	25170592	.	T	.	.	LowGQX	END=25170593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170594	.	C	.	.	LowGQX	.	GT	./.
chr2	25170595	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170596	.	A	.	.	LowGQX	END=25170598	GT	./.
chr2	25170599	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170600	.	G	.	.	LowGQX	END=25170603	GT	./.
chr2	25170604	.	T	.	.	LowGQX	END=25170613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170614	.	A	.	.	LowGQX	.	GT	./.
chr2	25170615	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170616	.	C	.	.	LowGQX	.	GT	./.
chr2	25170617	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25170618	.	C	.	.	LowGQX	.	GT	./.
chr2	25170619	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25174261	.	A	.	.	LowGQX	END=25174378	GT	./.
chr2	25174379	.	T	.	.	LowGQX	END=25174425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179860	.	A	.	.	LowGQX	.	GT	./.
chr2	25179861	.	T	.	.	LowGQX	END=25179863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179864	.	G	.	.	LowGQX	.	GT	./.
chr2	25179865	.	C	.	.	LowGQX	END=25179866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179867	.	C	.	.	LowGQX	.	GT	./.
chr2	25179868	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179869	.	G	.	.	LowGQX	END=25179870	GT	./.
chr2	25179871	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179872	.	G	.	.	LowGQX	.	GT	./.
chr2	25179873	.	C	.	.	LowGQX	END=25179874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179875	.	T	.	.	LowGQX	.	GT	./.
chr2	25179876	.	T	.	.	LowGQX	END=25179884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179885	.	C	.	.	LowGQX	END=25179886	GT	./.
chr2	25179887	.	T	.	.	LowGQX	END=25179890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179891	.	A	.	.	LowGQX	.	GT	./.
chr2	25179892	.	A	.	.	LowGQX	END=25179893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179894	.	A	.	.	LowGQX	.	GT	./.
chr2	25179895	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179896	.	C	.	.	LowGQX	.	GT	./.
chr2	25179897	.	A	.	.	LowGQX	END=25179901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179902	.	G	.	.	LowGQX	.	GT	./.
chr2	25179903	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179904	.	T	.	.	LowGQX	.	GT	./.
chr2	25179905	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179906	.	G	.	.	LowGQX	.	GT	./.
chr2	25179907	.	C	.	.	LowGQX	END=25179908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179909	.	T	.	.	LowGQX	.	GT	./.
chr2	25179910	.	A	.	.	LowGQX	END=25179914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179915	.	G	.	.	LowGQX	END=25179919	GT	./.
chr2	25179920	.	T	.	.	LowGQX	END=25179929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179930	.	G	.	.	LowGQX	.	GT	./.
chr2	25179931	.	C	.	.	LowGQX	END=25179939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179940	.	G	.	.	LowGQX	.	GT	./.
chr2	25179941	.	T	.	.	LowGQX	END=25179954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179955	.	T	.	.	LowGQX	.	GT	./.
chr2	25179956	.	C	.	.	LowGQX	END=25179960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179961	.	T	.	.	LowGQX	.	GT	./.
chr2	25179962	.	A	.	.	LowGQX	END=25179992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25179993	.	T	.	.	LowGQX	.	GT	./.
chr2	25179994	.	C	.	.	LowGQX	END=25180000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25180001	.	T	.	.	LowGQX	END=25180036	GT	./.
chr2	25180677	.	A	.	.	LowGQX	END=25180845	GT	./.
chr2	25181406	.	A	.	.	LowGQX	END=25181505	GT	./.
chr2	25186259	.	A	.	.	LowGQX	END=25186266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25186267	.	T	.	.	LowGQX	.	GT	./.
chr2	25186268	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25186269	.	C	.	.	LowGQX	END=25186358	GT	./.
chr2	25190072	.	A	.	.	LowGQX	END=25190124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25190125	.	A	.	.	LowGQX	END=25190171	GT	./.
chr2	25194681	.	A	.	.	LowGQX	END=25194780	GT	./.
chr2	25265075	.	C	.	.	LowGQX	END=25265234	GT	./.
chr2	25314123	.	G	.	.	LowGQX	END=25314144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25314145	.	G	.	.	LowGQX	.	GT	./.
chr2	25314146	.	G	.	.	LowGQX	END=25314161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25314162	.	T	.	.	LowGQX	END=25314163	GT	./.
chr2	25314164	.	T	.	.	LowGQX	END=25314172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25314173	.	T	.	.	LowGQX	.	GT	./.
chr2	25314174	.	T	.	.	LowGQX	END=25314185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25314186	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	25314187	.	A	.	.	LowGQX	END=25314194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25314195	.	T	.	.	LowGQX	.	GT	./.
chr2	25314196	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25314197	.	T	.	.	LowGQX	END=25314281	GT	./.
chr2	25315871	.	G	.	.	LowGQX	END=25315999	GT	./.
chr2	25326505	.	G	.	.	LowGQX	END=25326526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25326527	.	G	.	.	LowGQX	.	GT	./.
chr2	25326528	.	G	.	.	LowGQX	END=25326541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25326542	.	G	.	.	LowGQX	.	GT	./.
chr2	25326543	.	C	.	.	LowGQX	END=25326551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25326552	.	T	.	.	LowGQX	.	GT	./.
chr2	25326553	.	G	.	.	LowGQX	END=25326600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25326601	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	25326602	.	G	.	.	LowGQX	END=25326624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	25326625	.	A	.	.	LowGQX	.	GT	./.
chr2	25326626	.	A	.	.	LowGQX	END=25326652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25326653	.	C	.	.	LowGQX	END=25326654	GT	./.
chr2	25326655	.	C	.	.	LowGQX	END=25326656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25344541	.	G	.	.	LowGQX	END=25344663	GT	./.
chr2	25351051	.	G	.	.	LowGQX	END=25351085	GT	./.
chr2	25351086	.	G	.	.	LowGQX	END=25351201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	25352843	.	G	.	.	LowGQX	END=25352978	GT	./.
chr2	25353410	.	C	.	.	LowGQX	END=25353509	GT	./.
chr2	25354236	.	G	.	.	LowGQX	END=25354372	GT	./.
chr2	25354618	.	G	.	.	LowGQX	END=25354780	GT	./.
chr2	25355771	.	G	.	.	LowGQX	END=25355848	GT	./.
chr2	25355849	.	T	.	.	LowGQX	END=25355850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25355851	.	C	.	.	LowGQX	END=25355852	GT	./.
chr2	25355853	.	T	.	.	LowGQX	END=25355854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25355855	.	C	.	.	LowGQX	.	GT	./.
chr2	25355856	.	A	.	.	LowGQX	END=25355857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25355858	.	C	.	.	LowGQX	.	GT	./.
chr2	25355859	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25355860	.	G	.	.	LowGQX	END=25355861	GT	./.
chr2	25355862	.	C	.	.	LowGQX	END=25355863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25355864	.	G	.	.	LowGQX	.	GT	./.
chr2	25355865	.	T	.	.	LowGQX	END=25355873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25355874	.	G	.	.	LowGQX	.	GT	./.
chr2	25355875	.	C	.	.	LowGQX	END=25355881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25355882	.	G	.	.	LowGQX	.	GT	./.
chr2	25355883	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25356228	.	A	.	.	LowGQX	END=25356327	GT	./.
chr2	25358335	.	G	.	.	LowGQX	END=25358508	GT	./.
chr2	25359380	.	A	.	.	LowGQX	END=25359479	GT	./.
chr2	25360209	.	G	.	.	LowGQX	END=25360371	GT	./.
chr2	25361867	.	G	.	.	LowGQX	END=25362029	GT	./.
chr2	25362030	.	G	.	.	LowGQX	END=25362036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25362037	.	C	.	.	LowGQX	.	GT	./.
chr2	25362038	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25362039	.	T	.	.	LowGQX	.	GT	./.
chr2	25362040	.	T	.	.	LowGQX	END=25362041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25362042	.	T	.	.	LowGQX	.	GT	./.
chr2	25362043	.	G	.	.	LowGQX	END=25362045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25362046	.	A	.	.	LowGQX	.	GT	./.
chr2	25362047	.	G	.	.	LowGQX	END=25362054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25362055	.	A	.	.	LowGQX	END=25362056	GT	./.
chr2	25362057	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25362058	.	A	.	.	LowGQX	.	GT	./.
chr2	25362059	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25364219	.	T	.	.	LowGQX	END=25364225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25364226	.	A	.	.	LowGQX	.	GT	./.
chr2	25364227	.	A	.	.	LowGQX	END=25364228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25364229	.	C	.	.	LowGQX	.	GT	./.
chr2	25364230	.	G	.	.	LowGQX	END=25364231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25364232	.	C	.	.	LowGQX	.	GT	./.
chr2	25364233	.	A	.	.	LowGQX	END=25364256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25364257	.	A	.	.	LowGQX	END=25364318	GT	./.
chr2	25366603	.	G	.	.	LowGQX	END=25366639	GT	./.
chr2	25366640	.	C	.	.	LowGQX	END=25366731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367828	.	G	.	.	LowGQX	END=25367831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367832	.	A	.	.	LowGQX	.	GT	./.
chr2	25367833	.	G	.	.	LowGQX	END=25367837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367838	.	G	.	.	LowGQX	.	GT	./.
chr2	25367839	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367840	.	T	.	.	LowGQX	.	GT	./.
chr2	25367841	.	T	.	.	LowGQX	END=25367866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367867	.	A	.	.	LowGQX	.	GT	./.
chr2	25367868	.	C	.	.	LowGQX	END=25367879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367880	.	A	.	.	LowGQX	.	GT	./.
chr2	25367881	.	G	.	.	LowGQX	END=25367882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367883	.	T	.	.	LowGQX	.	GT	./.
chr2	25367884	.	G	.	.	LowGQX	END=25367889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367890	.	A	.	.	LowGQX	.	GT	./.
chr2	25367891	.	G	.	.	LowGQX	END=25367898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367899	.	G	.	.	LowGQX	END=25367901	GT	./.
chr2	25367902	.	C	.	.	LowGQX	END=25367906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367907	.	C	.	.	LowGQX	.	GT	./.
chr2	25367908	.	G	.	.	LowGQX	END=25367910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367911	.	G	.	.	LowGQX	END=25367912	GT	./.
chr2	25367913	.	A	.	.	LowGQX	END=25367916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367917	.	G	.	.	LowGQX	END=25367918	GT	./.
chr2	25367919	.	A	.	.	LowGQX	END=25367921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367922	.	T	.	.	LowGQX	.	GT	./.
chr2	25367923	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367924	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	25367925	.	G	.	.	LowGQX	END=25367926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367927	.	G	.	.	LowGQX	END=25367928	GT	./.
chr2	25367929	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367930	.	C	.	.	LowGQX	END=25367931	GT	./.
chr2	25367932	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367933	.	G	.	.	LowGQX	.	GT	./.
chr2	25367934	.	C	.	.	LowGQX	END=25367937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367938	.	C	.	.	LowGQX	.	GT	./.
chr2	25367939	.	G	.	.	LowGQX	END=25367942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367943	.	T	.	.	LowGQX	.	GT	./.
chr2	25367944	.	G	.	.	LowGQX	END=25367945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367946	.	G	.	.	LowGQX	.	GT	./.
chr2	25367947	.	G	.	.	LowGQX	END=25367952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367953	.	C	.	.	LowGQX	.	GT	./.
chr2	25367954	.	C	.	.	LowGQX	END=25367955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367956	.	C	.	.	LowGQX	.	GT	./.
chr2	25367957	.	C	.	.	LowGQX	END=25367958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367959	.	C	.	.	LowGQX	.	GT	./.
chr2	25367960	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25367961	.	T	.	.	LowGQX	END=25367963	GT	./.
chr2	25367964	.	A	.	.	LowGQX	END=25367965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25372537	.	G	.	.	LowGQX	END=25372636	GT	./.
chr2	25374782	.	G	.	.	LowGQX	END=25374889	GT	./.
chr2	25376556	.	C	.	.	LowGQX	END=25376655	GT	./.
chr2	25377103	.	G	.	.	LowGQX	END=25377209	GT	./.
chr2	25383899	.	C	.	.	PASS	END=25383922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr2	25383923	.	G	.	.	PASS	END=25383938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	25383939	.	C	.	.	PASS	END=25383946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	25383947	.	C	.	.	PASS	END=25383973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	25383974	.	C	.	.	PASS	END=25384000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	25384001	.	C	.	.	PASS	END=25384056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	25384057	.	T	.	.	PASS	END=25384145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr2	25384146	.	G	.	.	PASS	END=25384189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr2	25384190	.	T	.	.	PASS	END=25384223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:267:99:60
chr2	25384224	.	T	.	.	PASS	END=25384338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:300:99:60
chr2	25384339	.	A	.	.	PASS	END=25384346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr2	25384347	.	T	.	.	PASS	END=25384395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	25384396	.	C	.	.	PASS	END=25384477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr2	25384478	.	G	.	.	PASS	END=25384546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr2	25384547	.	A	.	.	PASS	END=25384629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr2	25384630	.	A	.	.	PASS	END=25384658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr2	25384659	.	C	.	.	PASS	END=25384672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	25387459	.	C	.	.	PASS	END=25387465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr2	25387466	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:69:60
chr2	25387467	.	C	.	.	PASS	END=25387493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	25387494	.	G	.	.	PASS	END=25387525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	25387526	.	G	.	.	PASS	END=25387642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	25387643	.	T	.	.	PASS	END=25387660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	25387661	.	T	.	.	PASS	END=25387690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:83:60
chr2	25387691	.	C	.	.	PASS	END=25387692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	25457146	.	C	.	.	PASS	END=25457205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr2	25457206	.	C	.	.	PASS	END=25457271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr2	25457272	.	A	.	.	PASS	END=25457291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr2	25458574	.	A	.	.	PASS	END=25458599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	25458600	.	A	.	.	PASS	END=25458686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	25458687	.	T	.	.	PASS	END=25458732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	25458733	.	A	.	.	PASS	END=25458743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	25459790	.	G	.	.	PASS	END=25459824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	25459825	.	C	.	.	PASS	END=25459889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	25461992	.	C	.	.	PASS	END=25462019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	25462020	.	C	.	.	PASS	END=25462047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	25462048	.	C	.	.	PASS	END=25462091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	25462323	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:36:60
chr2	25462324	.	C	.	.	PASS	END=25462332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	25462333	.	T	.	.	LowGQX	END=25462338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr2	25462339	.	A	.	.	LowGQX	END=25462342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	25462343	.	A	.	.	LowGQX	END=25462348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr2	25462349	.	C	.	.	LowGQX	END=25462367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	25462368	.	G	.	.	LowGQX	END=25462376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	25462377	.	T	.	.	LowGQX	END=25462378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	25462379	.	G	.	.	LowGQX	END=25462388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	25462389	.	T	.	.	LowGQX	END=25462390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	25462391	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr2	25462392	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	25462393	.	G	.	.	LowGQX	END=25462405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	25462406	.	A	.	.	LowGQX	END=25462407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	25462408	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	25462409	.	A	.	.	LowGQX	END=25462422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	25463139	.	T	.	.	PASS	END=25463203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	25463204	.	A	.	.	PASS	END=25463267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	25463268	.	C	.	.	PASS	END=25463284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	25463285	.	G	.	.	PASS	END=25463309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr2	25463310	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:64:60
chr2	25463311	.	C	.	.	PASS	END=25463321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr2	25463505	.	C	.	.	PASS	END=25463604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	25464429	.	A	.	.	PASS	END=25464453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:90:60
chr2	25464454	.	C	.	.	PASS	END=25464481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	25464482	.	G	.	.	PASS	END=25464559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	25464560	.	C	.	.	PASS	END=25464582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	25464583	.	C	.	.	PASS	END=25464607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	25464608	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:99:60
chr2	25466700	.	G	.	.	PASS	END=25466706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	25466707	.	C	.	.	PASS	END=25466721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	25466722	.	T	.	.	PASS	END=25466751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	25466752	.	G	.	.	PASS	END=25466806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	25466807	.	C	.	.	PASS	END=25466859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	25467022	.	A	.	.	PASS	END=25467054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr2	25467055	.	A	.	.	PASS	END=25467154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr2	25467155	.	C	.	.	PASS	END=25467190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr2	25467191	.	A	.	.	PASS	END=25467209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	25467407	.	A	.	.	PASS	END=25467505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	25467506	.	A	.	.	PASS	END=25467523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	25468112	.	G	.	.	PASS	END=25468200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	25468201	.	T	.	.	PASS	END=25468211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	25468862	.	G	.	.	PASS	END=25468961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	25469027	.	A	.	.	PASS	END=25469156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	25469157	.	T	.	.	PASS	END=25469180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	25469487	.	A	.	.	PASS	END=25469631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:284:99:60
chr2	25469632	.	C	.	.	PASS	END=25469647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:263:99:60
chr2	25469918	.	A	.	.	PASS	END=25470023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	25470024	.	A	.	.	PASS	END=25470029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	25470458	.	A	.	.	PASS	END=25470501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	25470502	.	G	.	.	PASS	END=25470588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	25470589	.	C	.	.	PASS	END=25470616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	25470617	.	T	.	.	PASS	END=25470620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	25470834	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:99:60
chr2	25470835	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:66:60
chr2	25470836	.	A	.	.	PASS	END=25470867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr2	25470868	.	G	.	.	PASS	END=25470904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	25470905	.	C	.	.	PASS	END=25471016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	25471017	.	C	.	.	PASS	END=25471103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	25471104	.	C	.	.	PASS	END=25471137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	25471138	.	C	.	.	PASS	END=25471165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr2	25471166	.	T	.	.	PASS	END=25471175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr2	25471176	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:42:60
chr2	25471177	.	A	.	.	PASS	END=25471183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr2	25472510	.	G	.	.	PASS	END=25472555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	25472556	.	C	.	.	PASS	END=25472582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	25472583	.	C	.	.	PASS	END=25472600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	25472601	.	G	.	.	PASS	END=25472609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	25474955	.	G	.	.	PASS	END=25474962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	25474963	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:0:60
chr2	25474964	.	A	.	.	PASS	END=25474973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr2	25474974	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:24:60
chr2	25474975	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr2	25474976	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr2	25474977	.	C	.	.	PASS	END=25474979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr2	25474980	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr2	25474981	.	C	.	.	PASS	END=25474997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr2	25474998	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr2	25474999	.	T	.	.	PASS	END=25475026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr2	25475027	.	C	.	.	PASS	END=25475033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr2	25475034	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr2	25475035	.	C	.	.	PASS	END=25475057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr2	25475058	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr2	25475059	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr2	25475060	.	T	.	.	PASS	END=25475066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	25475067	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	25475068	.	A	.	.	PASS	END=25475069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	25475070	.	G	.	.	LowGQX	END=25475072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr2	25475073	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	25475074	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr2	25475075	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	25475076	.	T	.	.	LowGQX	END=25475082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	25475083	.	C	.	.	LowGQX	END=25475099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	25475100	.	A	.	.	LowGQX	END=25475102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	25475103	.	T	.	.	LowGQX	END=25475106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	25475107	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr2	25475108	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr2	25475109	.	C	.	.	LowGQX	END=25475114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	25497808	.	A	.	.	PASS	END=25497855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:291:99:60
chr2	25497856	.	A	.	.	PASS	END=25497958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:328:99:60
chr2	25498287	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:57:59
chr2	25498288	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:30:59
chr2	25498289	.	C	.	.	PASS	END=25498294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:59
chr2	25498295	.	C	.	.	PASS	END=25498304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:85:60
chr2	25498305	.	C	.	.	PASS	END=25498339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	25498340	.	C	.	.	PASS	END=25498358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	25498359	.	G	.	.	PASS	END=25498440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	25505256	.	C	.	.	PASS	END=25505273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	25505274	.	G	.	.	PASS	END=25505423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	25505424	.	C	.	.	PASS	END=25505563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	25505564	.	G	.	.	PASS	END=25505582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	25523006	.	A	.	.	PASS	END=25523034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	25523035	.	C	.	.	PASS	END=25523111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	25523112	.	C	.	.	PASS	END=25523114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	25536709	.	C	.	.	PASS	END=25536741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr2	25536742	.	C	.	.	PASS	END=25536846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:260:99:60
chr2	25536847	.	C	.	.	PASS	END=25536867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr2	25551500	.	G	.	.	LowGQX	END=25551599	GT	./.
chr2	25602080	.	C	.	.	LowGQX	END=25602239	GT	./.
chr2	25606666	.	T	.	.	LowGQX	END=25606765	GT	./.
chr2	25610153	.	T	.	.	LowGQX	END=25610252	GT	./.
chr2	25611040	.	C	.	.	LowGQX	END=25611230	GT	./.
chr2	25622275	.	T	.	.	LowGQX	END=25622374	GT	./.
chr2	25642282	.	T	.	.	LowGQX	END=25642404	GT	./.
chr2	25650402	.	A	.	.	LowGQX	END=25650501	GT	./.
chr2	25655702	.	A	.	.	LowGQX	END=25655868	GT	./.
chr2	25656772	.	T	.	.	LowGQX	END=25656871	GT	./.
chr2	25674411	.	A	.	.	LowGQX	END=25674510	GT	./.
chr2	25678269	.	C	.	.	LowGQX	END=25678305	GT	./.
chr2	25678306	.	G	.	.	LowGQX	END=25678368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25705594	.	A	.	.	LowGQX	END=25705718	GT	./.
chr2	25705719	.	A	.	.	LowGQX	END=25705737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25705738	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	25705739	.	A	.	.	LowGQX	END=25705748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	25705749	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	25705750	.	A	.	.	LowGQX	END=25705753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	25754341	.	C	.	.	LowGQX	END=25754510	GT	./.
chr2	25799706	.	C	.	.	LowGQX	END=25799873	GT	./.
chr2	25803533	.	A	.	.	LowGQX	END=25803695	GT	./.
chr2	25818954	.	C	.	.	LowGQX	END=25819109	GT	./.
chr2	25830098	.	T	.	.	LowGQX	END=25830197	GT	./.
chr2	25851039	.	C	.	.	LowGQX	END=25851253	GT	./.
chr2	25861873	.	A	.	.	LowGQX	END=25861972	GT	./.
chr2	25875446	.	A	.	.	LowGQX	END=25875545	GT	./.
chr2	25964897	.	A	.	.	LowGQX	END=25965616	GT	./.
chr2	25965617	.	C	.	.	LowGQX	END=25965644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25965645	.	A	.	.	LowGQX	.	GT	./.
chr2	25965646	.	C	.	.	LowGQX	END=25965681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25965682	.	C	.	.	LowGQX	.	GT	./.
chr2	25965683	.	T	.	.	LowGQX	END=25965766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25965767	.	C	.	.	LowGQX	END=25965788	GT	./.
chr2	25965789	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25965790	.	C	.	.	LowGQX	END=25965791	GT	./.
chr2	25965792	.	A	.	.	LowGQX	END=25965799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25965800	.	C	.	.	LowGQX	.	GT	./.
chr2	25965801	.	T	.	.	LowGQX	END=25965803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25965804	.	G	.	.	LowGQX	.	GT	./.
chr2	25965805	.	C	.	.	LowGQX	END=25965815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25965816	.	G	.	.	LowGQX	.	GT	./.
chr2	25965817	.	G	.	.	LowGQX	END=25965853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	25965854	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	25965855	.	T	.	.	LowGQX	END=25965874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	25965875	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	25965876	.	A	.	.	LowGQX	END=25965895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	25965896	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:3.01:60:3
chr2	25965897	.	G	.	.	LowGQX	END=25965980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25965981	.	C	.	.	LowGQX	END=25965982	GT	./.
chr2	25965983	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25965984	.	A	.	.	LowGQX	.	GT	./.
chr2	25965985	.	A	.	.	LowGQX	END=25966000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25966001	.	T	.	.	LowGQX	END=25967345	GT	./.
chr2	25972564	.	C	.	.	LowGQX	END=25972645	GT	./.
chr2	25972646	.	G	.	.	LowGQX	END=25972649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25972650	.	T	.	.	LowGQX	.	GT	./.
chr2	25972651	.	G	.	.	LowGQX	END=25972655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25972656	.	T	.	.	LowGQX	.	GT	./.
chr2	25972657	.	T	.	.	LowGQX	END=25972668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25972669	.	G	.	.	LowGQX	END=25972672	GT	./.
chr2	25972673	.	C	.	.	LowGQX	END=25972676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25972677	.	T	.	.	LowGQX	.	GT	./.
chr2	25972678	.	T	.	.	LowGQX	END=25972679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25972680	.	T	.	.	LowGQX	.	GT	./.
chr2	25972681	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25972682	.	C	.	.	LowGQX	.	GT	./.
chr2	25972683	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25972684	.	A	.	.	LowGQX	.	GT	./.
chr2	25972685	.	G	.	.	LowGQX	END=25972692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25972693	.	G	.	.	LowGQX	END=25972696	GT	./.
chr2	25972697	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25972698	.	T	.	.	LowGQX	.	GT	./.
chr2	25972699	.	C	.	.	LowGQX	END=25972704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25972705	.	G	.	.	LowGQX	.	GT	./.
chr2	25972706	.	G	.	.	LowGQX	END=25972707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25972708	.	T	.	.	LowGQX	END=25972709	GT	./.
chr2	25972710	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25972711	.	G	.	.	LowGQX	END=25972713	GT	./.
chr2	25972714	.	A	.	.	LowGQX	END=25972716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25972717	.	A	.	.	LowGQX	.	GT	./.
chr2	25972718	.	C	.	.	LowGQX	END=25972719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25972720	.	T	.	.	LowGQX	.	GT	./.
chr2	25972721	.	C	.	.	LowGQX	END=25972722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25972723	.	T	.	.	LowGQX	END=25972724	GT	./.
chr2	25972725	.	T	.	.	LowGQX	END=25972726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25972727	.	G	.	.	LowGQX	.	GT	./.
chr2	25972728	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25972729	.	G	.	.	LowGQX	.	GT	./.
chr2	25972730	.	G	.	.	LowGQX	END=25972764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	25972765	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	25972766	.	T	.	.	LowGQX	END=25972778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	25972779	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	25972780	.	T	.	.	LowGQX	END=25972787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	25972788	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	25972789	.	G	.	.	LowGQX	END=25972791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	25972792	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	25972793	.	C	.	.	LowGQX	END=25972795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	25972796	.	T	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr2	25972797	.	C	.	.	LowGQX	END=25972828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	25972829	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	25972830	.	C	.	.	LowGQX	END=25972831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	25972832	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	25972833	.	G	.	.	LowGQX	END=25972949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25972950	.	T	.	.	LowGQX	.	GT	./.
chr2	25972951	.	T	.	.	LowGQX	END=25973006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	25973007	.	T	.	.	LowGQX	END=25973282	GT	./.
chr2	25976402	.	C	.	.	LowGQX	END=25976508	GT	./.
chr2	25978825	.	G	.	.	LowGQX	END=25978984	GT	./.
chr2	25982350	.	C	.	.	LowGQX	END=25982514	GT	./.
chr2	25990451	.	C	.	.	LowGQX	END=25990595	GT	./.
chr2	25991610	.	C	.	.	LowGQX	END=25991737	GT	./.
chr2	25994308	.	C	.	.	LowGQX	END=25994409	GT	./.
chr2	26022223	.	A	.	.	LowGQX	END=26022404	GT	./.
chr2	26029097	.	C	.	.	LowGQX	END=26029209	GT	./.
chr2	26058358	.	T	.	.	LowGQX	END=26058457	GT	./.
chr2	26068112	.	A	.	.	LowGQX	END=26068211	GT	./.
chr2	26068341	.	A	.	.	LowGQX	END=26068440	GT	./.
chr2	26100953	.	A	.	.	LowGQX	END=26101112	GT	./.
chr2	26151844	.	T	.	.	LowGQX	END=26151931	GT	./.
chr2	26151932	.	C	.	.	LowGQX	END=26151943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26152172	.	A	.	.	LowGQX	END=26152348	GT	./.
chr2	26152822	.	A	.	.	LowGQX	END=26152934	GT	./.
chr2	26156971	.	G	.	.	LowGQX	END=26157070	GT	./.
chr2	26161084	.	T	.	.	LowGQX	.	GT	./.
chr2	26161085	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161086	.	G	.	.	LowGQX	.	GT	./.
chr2	26161087	.	C	.	.	LowGQX	END=26161092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161093	.	A	.	.	LowGQX	.	GT	./.
chr2	26161094	.	T	.	.	LowGQX	END=26161095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161096	.	G	.	.	LowGQX	.	GT	./.
chr2	26161097	.	C	.	.	LowGQX	END=26161098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161099	.	C	.	.	LowGQX	.	GT	./.
chr2	26161100	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161101	.	T	.	.	LowGQX	.	GT	./.
chr2	26161102	.	A	.	.	LowGQX	END=26161103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161104	.	C	.	.	LowGQX	.	GT	./.
chr2	26161105	.	T	.	.	LowGQX	END=26161110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161111	.	C	.	.	LowGQX	.	GT	./.
chr2	26161112	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161113	.	C	.	.	LowGQX	.	GT	./.
chr2	26161114	.	A	.	.	LowGQX	END=26161116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161117	.	T	.	.	LowGQX	.	GT	./.
chr2	26161118	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161119	.	C	.	.	LowGQX	END=26161124	GT	./.
chr2	26161125	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161126	.	G	.	.	LowGQX	.	GT	./.
chr2	26161127	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161128	.	T	.	.	LowGQX	.	GT	./.
chr2	26161129	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161130	.	A	.	.	LowGQX	.	GT	./.
chr2	26161131	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161132	.	T	.	.	LowGQX	END=26161133	GT	./.
chr2	26161134	.	A	.	.	LowGQX	END=26161135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161136	.	A	.	.	LowGQX	END=26161138	GT	./.
chr2	26161139	.	A	.	.	LowGQX	END=26161141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161142	.	G	.	.	LowGQX	END=26161143	GT	./.
chr2	26161144	.	T	.	.	LowGQX	END=26161145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161146	.	G	.	.	LowGQX	.	GT	./.
chr2	26161147	.	A	.	.	LowGQX	END=26161149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161150	.	C	.	.	LowGQX	.	GT	./.
chr2	26161151	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161152	.	G	.	.	LowGQX	END=26161153	GT	./.
chr2	26161154	.	G	.	.	LowGQX	END=26161158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161159	.	G	.	.	LowGQX	END=26161160	GT	./.
chr2	26161161	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161162	.	G	.	.	LowGQX	END=26161165	GT	./.
chr2	26161166	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26161167	.	C	.	.	LowGQX	END=26161182	GT	./.
chr2	26161183	.	T	.	.	LowGQX	END=26161190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26161191	.	C	.	.	LowGQX	.	GT	./.
chr2	26161192	.	A	.	.	LowGQX	END=26161196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26161197	.	A	.	.	LowGQX	END=26161198	GT	./.
chr2	26161199	.	C	.	.	LowGQX	END=26161200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26161201	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	26161202	.	G	.	.	LowGQX	END=26161204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26161205	.	C	.	.	LowGQX	.	GT	./.
chr2	26161206	.	G	.	.	LowGQX	END=26161208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26161209	.	A	.	.	LowGQX	END=26161211	GT	./.
chr2	26161212	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26161213	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	26161214	.	G	.	.	LowGQX	.	GT	./.
chr2	26161215	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	26161216	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26161217	.	T	.	5.68	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr2	26161218	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	26161219	.	T	.	.	LowGQX	END=26161222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26161223	.	T	.	.	LowGQX	.	GT	./.
chr2	26161224	.	C	.	.	LowGQX	END=26161243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26174656	.	A	.	.	LowGQX	END=26174696	GT	./.
chr2	26174697	.	T	.	.	LowGQX	END=26174748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26174749	.	G	.	.	LowGQX	.	GT	./.
chr2	26174750	.	G	.	.	LowGQX	END=26174776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26177134	.	A	.	.	LowGQX	.	GT	./.
chr2	26177135	.	C	.	.	LowGQX	END=26177137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26177138	.	G	.	.	LowGQX	END=26177139	GT	./.
chr2	26177140	.	G	.	.	LowGQX	END=26177143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26177144	.	G	.	.	LowGQX	END=26177146	GT	./.
chr2	26177147	.	T	.	.	LowGQX	END=26177148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26177149	.	C	.	.	LowGQX	.	GT	./.
chr2	26177150	.	G	.	.	LowGQX	END=26177151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26177152	.	G	.	.	LowGQX	.	GT	./.
chr2	26177153	.	G	.	.	LowGQX	END=26177165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26177166	.	T	.	.	LowGQX	.	GT	./.
chr2	26177167	.	G	.	.	LowGQX	END=26177169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26177170	.	C	.	.	LowGQX	.	GT	./.
chr2	26177171	.	C	.	.	LowGQX	END=26177179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26177180	.	G	.	.	LowGQX	END=26177181	GT	./.
chr2	26177182	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26177183	.	C	.	.	LowGQX	END=26177256	GT	./.
chr2	26178408	.	A	.	.	LowGQX	END=26178534	GT	./.
chr2	26179210	.	A	.	.	LowGQX	END=26179212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26179213	.	T	.	.	LowGQX	.	GT	./.
chr2	26179214	.	G	.	.	LowGQX	END=26179217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26179218	.	G	.	.	LowGQX	.	GT	./.
chr2	26179219	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26179220	.	C	.	.	LowGQX	.	GT	./.
chr2	26179221	.	A	.	.	LowGQX	END=26179231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26179232	.	T	.	.	LowGQX	.	GT	./.
chr2	26179233	.	C	.	.	LowGQX	END=26179237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26179238	.	G	.	.	LowGQX	.	GT	./.
chr2	26179239	.	T	.	.	LowGQX	END=26179243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26179244	.	A	.	.	LowGQX	.	GT	./.
chr2	26179245	.	C	.	.	LowGQX	END=26179285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26179286	.	C	.	.	LowGQX	.	GT	./.
chr2	26179287	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26179288	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	26179289	.	C	.	.	LowGQX	END=26179292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26179293	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	26179294	.	A	.	.	LowGQX	END=26179295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26179296	.	G	.	.	LowGQX	.	GT	./.
chr2	26179297	.	A	.	.	LowGQX	END=26179304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26179305	.	C	.	.	LowGQX	.	GT	./.
chr2	26179306	.	T	.	.	LowGQX	END=26179307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26179308	.	C	.	.	LowGQX	.	GT	./.
chr2	26179309	.	A	.	.	LowGQX	END=26179310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26179311	.	G	.	.	LowGQX	.	GT	./.
chr2	26179312	.	G	.	.	LowGQX	END=26179315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26203240	.	A	.	.	LowGQX	END=26204736	GT	./.
chr2	26204737	.	C	.	.	LowGQX	END=26204783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26204784	.	C	.	.	LowGQX	END=26204785	GT	./.
chr2	26204786	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26204787	.	C	.	.	LowGQX	.	GT	./.
chr2	26204788	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26257476	.	C	.	.	LowGQX	END=26257606	GT	./.
chr2	26321459	.	T	.	.	LowGQX	END=26321611	GT	./.
chr2	26332635	.	A	.	.	LowGQX	END=26332777	GT	./.
chr2	26350008	.	T	.	.	LowGQX	END=26350160	GT	./.
chr2	26350717	.	A	.	.	LowGQX	END=26350822	GT	./.
chr2	26357799	.	T	.	.	LowGQX	END=26357898	GT	./.
chr2	26396038	.	C	.	.	LowGQX	END=26396201	GT	./.
chr2	26399212	.	G	.	.	LowGQX	END=26399353	GT	./.
chr2	26405302	.	G	.	.	LowGQX	END=26405401	GT	./.
chr2	26405835	.	G	.	.	LowGQX	END=26405966	GT	./.
chr2	26407101	.	G	.	.	LowGQX	END=26408150	GT	./.
chr2	26409057	.	G	.	.	LowGQX	END=26409215	GT	./.
chr2	26409216	.	C	.	.	LowGQX	END=26409245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26410099	.	G	.	.	LowGQX	END=26411126	GT	./.
chr2	26414068	.	A	.	.	PASS	END=26414084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:84:60
chr2	26414085	.	T	.	.	PASS	END=26414094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	26414095	.	G	.	.	PASS	END=26414109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	26414110	.	G	.	.	PASS	END=26414230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	26414231	.	T	.	.	PASS	END=26414254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	26414255	.	C	.	.	PASS	END=26414323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	26414324	.	A	.	.	PASS	END=26414378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	26414379	.	C	.	.	PASS	END=26414444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	26414445	.	C	.	.	PASS	END=26414526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	26414527	.	A	.	.	PASS	END=26414547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	26414548	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:99:60
chr2	26415128	.	G	.	.	PASS	END=26415180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:87:60
chr2	26415181	.	T	.	.	PASS	END=26415214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	26415215	.	A	.	.	PASS	END=26415300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	26415301	.	A	.	.	PASS	END=26415324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	26415325	.	T	.	.	PASS	END=26415344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	26416395	.	T	.	.	PASS	END=26416400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr2	26416401	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:59:60
chr2	26416402	.	T	.	.	PASS	END=26416415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr2	26416416	.	T	.	.	PASS	END=26416440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr2	26416441	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:58:60
chr2	26416442	.	T	.	.	PASS	END=26416453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	26416454	.	C	.	.	PASS	END=26416491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	26416492	.	A	.	.	PASS	END=26416514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	26416515	.	C	.	.	PASS	END=26416591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	26416592	.	A	.	.	PASS	END=26416608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	26416609	.	C	.	.	PASS	END=26416641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	26416642	.	C	.	.	PASS	END=26416658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr2	26416659	.	C	.	.	PASS	END=26416664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:96:60
chr2	26416665	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr2	26416666	.	C	.	.	PASS	END=26416669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr2	26416670	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:57:60
chr2	26416671	.	G	.	.	PASS	END=26416689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr2	26416690	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:36:60
chr2	26416691	.	C	.	.	PASS	END=26416692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr2	26417388	.	G	.	.	PASS	END=26417425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	26417426	.	G	.	.	PASS	END=26417493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	26417494	.	A	.	.	PASS	END=26417524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	26417525	.	A	.	.	PASS	END=26417532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	26417533	.	C	A	2104.80	PASS	BaseQRankSum=1.372;DP=77;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=-1.642;QD=27.34;ReadPosRankSum=1.147;SB=-953.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,76:77:99:2138,163,0:60:99:0.987
chr2	26417534	.	C	.	.	PASS	END=26417549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	26417550	.	G	.	.	PASS	END=26417558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr2	26417910	.	T	.	.	PASS	END=26417921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr2	26417922	.	T	.	.	PASS	END=26417941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr2	26417942	.	C	.	.	PASS	END=26417951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr2	26417952	.	G	.	.	PASS	END=26418000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:60
chr2	26418001	.	G	.	.	PASS	END=26418092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	26418093	.	G	.	.	PASS	END=26418121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:81:60
chr2	26418122	.	C	.	.	PASS	END=26418152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	26420509	.	T	.	.	PASS	END=26420552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	26420553	.	A	.	.	PASS	END=26420614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	26420615	.	T	.	.	PASS	END=26420670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	26420671	.	T	.	.	PASS	END=26420690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	26420691	.	G	.	.	PASS	END=26420697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	26423967	.	G	.	.	PASS	END=26423980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr2	26423981	.	C	.	.	PASS	END=26423996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr2	26423997	.	G	.	.	PASS	END=26424029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	26424030	.	C	.	.	PASS	END=26424081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	26424082	.	A	.	.	PASS	END=26424178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	26424179	.	T	.	.	PASS	END=26424201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	26424202	.	C	.	.	PASS	END=26424240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	26426880	.	C	.	.	PASS	END=26426906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr2	26426907	.	T	.	.	PASS	END=26426960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	26426961	.	A	.	.	PASS	END=26427022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	26427023	.	G	.	.	PASS	END=26427059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	26427060	.	A	.	.	PASS	END=26427086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr2	26427087	.	A	.	.	PASS	END=26427107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	26427108	.	A	.	.	PASS	END=26427116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr2	26432598	.	C	.	.	PASS	END=26432652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	26432653	.	C	.	.	PASS	END=26432708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	26432709	.	A	.	.	PASS	END=26432740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	26432741	.	T	.	.	PASS	END=26432800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:88:60
chr2	26432801	.	C	.	.	PASS	END=26432807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	26432808	.	A	.	.	PASS	END=26432809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr2	26435354	.	T	.	.	PASS	END=26435370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr2	26435371	.	T	.	.	PASS	END=26435395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	26435396	.	T	.	.	PASS	END=26435518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	26435519	.	C	.	.	PASS	END=26435532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	26435533	.	A	.	.	PASS	END=26435546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr2	26437261	.	T	.	.	PASS	END=26437266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	26437267	.	A	.	.	PASS	END=26437298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	26437299	.	G	.	.	PASS	END=26437340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	26437341	.	G	.	.	PASS	END=26437412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	26437413	.	T	.	.	PASS	END=26437431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:87:60
chr2	26437432	.	T	.	.	PASS	END=26437481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	26437871	.	T	.	.	PASS	END=26437899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	26437900	.	G	.	.	PASS	END=26437941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	26437942	.	C	.	.	PASS	END=26437957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	26437958	.	T	.	.	PASS	END=26438061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	26438062	.	A	.	.	PASS	END=26438088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	26438089	.	C	.	.	PASS	END=26438094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	26438095	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:99:60
chr2	26453009	.	A	.	.	PASS	END=26453045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr2	26453046	.	G	.	.	PASS	END=26453137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	26453138	.	T	.	.	PASS	END=26453196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:85:60
chr2	26453197	.	A	.	.	PASS	END=26453213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr2	26454977	.	A	.	.	PASS	END=26454981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr2	26454982	.	G	.	.	PASS	END=26454992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr2	26454993	.	G	.	.	PASS	END=26454995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr2	26454996	.	A	G	1303.16	PASS	DP=44;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;QD=29.62;SB=-445.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,44:44:99:1336,102,0:60:99:1.000
chr2	26454997	.	T	.	.	PASS	END=26455038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	26455039	.	G	.	.	PASS	END=26455075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	26455076	.	C	.	.	PASS	END=26455148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	26455149	.	T	.	.	PASS	END=26455189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	26455190	.	C	.	.	PASS	END=26455198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	26457034	.	A	.	.	PASS	END=26457047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr2	26457048	.	G	.	.	PASS	END=26457076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	26457077	.	A	.	.	PASS	END=26457097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	26457098	.	C	.	.	PASS	END=26457152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	26457153	.	T	.	.	PASS	END=26457208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	26457209	.	C	.	.	PASS	END=26457228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	26457229	.	T	.	.	PASS	END=26457249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	26457250	.	A	.	.	PASS	END=26457274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:97:60
chr2	26459672	.	A	.	.	PASS	END=26459696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr2	26459697	.	G	.	.	PASS	END=26459707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	26459708	.	T	.	.	PASS	END=26459762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	26459763	.	A	.	.	PASS	END=26459855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	26459856	.	C	.	.	PASS	END=26459879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	26459880	.	G	.	.	PASS	END=26459907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:84:60
chr2	26461751	.	C	.	.	PASS	END=26461781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr2	26461782	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:48:60
chr2	26461783	.	T	.	.	PASS	END=26461815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr2	26461816	.	A	.	.	PASS	END=26461841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	26461842	.	C	.	.	PASS	END=26462003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	26462004	.	T	.	.	PASS	END=26462053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	26462054	.	C	.	.	PASS	END=26462062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	26467347	.	C	.	.	PASS	END=26467489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	26467490	.	A	.	.	PASS	END=26467491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	26467492	.	A	.	.	PASS	END=26467503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr2	26467504	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:60
chr2	26467505	.	G	.	.	PASS	END=26467506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr2	26467507	.	T	.	.	PASS	END=26467508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr2	26467509	.	C	.	.	PASS	END=26467515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	26477072	.	T	.	.	PASS	END=26477108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	26477109	.	T	.	.	PASS	END=26477125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	26477125	.	G	GACT	5715.88	PASS	DP=101;FS=0.000;HRun=0;HaplotypeScore=81.2468;MQ=60;MQ0=0;QD=56.59;SB=-1635.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:3,97:101:99:5716,295,0:60:99:0.970
chr2	26477126	.	A	.	.	PASS	END=26477153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	26477154	.	T	.	.	PASS	END=26477237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	26477240	.	A	.	.	PASS	END=26477289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	26477290	.	T	.	.	PASS	END=26477319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	26477320	.	C	.	.	PASS	END=26477344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	26477345	.	A	.	.	PASS	END=26477393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	26483860	.	G	.	.	LowGQX	END=26483886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26483887	.	A	.	.	LowGQX	END=26483959	GT	./.
chr2	26486197	.	G	.	.	PASS	END=26486199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:57:60
chr2	26486200	.	T	.	.	PASS	END=26486202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr2	26486203	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:30:60
chr2	26486204	.	T	.	.	PASS	END=26486205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:57:60
chr2	26486206	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:84:60
chr2	26486207	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:63:60
chr2	26486208	.	T	.	.	PASS	END=26486213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:75:60
chr2	26486214	.	T	.	.	PASS	END=26486216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr2	26486217	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr2	26486218	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:99:60
chr2	26486219	.	A	.	.	PASS	END=26486220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:75:60
chr2	26486221	.	T	.	.	PASS	END=26486225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	26486226	.	G	.	102.19	PASS	DP=48;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:38:47:72.20:60:72
chr2	26486227	.	T	.	.	PASS	END=26486234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	26486235	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:48:11:60
chr2	26486236	.	T	.	.	PASS	END=26486240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr2	26486241	.	C	.	114.26	PASS	DP=50;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:39:50:84.27:60:84
chr2	26486242	.	T	.	.	PASS	END=26486291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr2	26486292	.	A	.	.	PASS	END=26486305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr2	26486306	.	G	.	.	PASS	END=26486329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr2	26486330	.	T	.	.	PASS	END=26486344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	26486345	.	T	.	.	PASS	END=26486348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	26486349	.	T	.	.	PASS	END=26486370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr2	26486371	.	T	.	.	PASS	END=26486377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr2	26486378	.	C	.	.	LowGQX	END=26486379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:21:60
chr2	26486380	.	T	.	.	PASS	END=26486398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	26492770	.	T	.	.	PASS	END=26492821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	26492822	.	T	.	.	PASS	END=26492856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	26492857	.	A	.	.	PASS	END=26492890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	26492891	.	T	.	.	PASS	END=26492916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	26496468	.	G	.	.	PASS	END=26496472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr2	26496473	.	G	.	.	PASS	END=26496532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	26496533	.	G	.	.	PASS	END=26496610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	26496611	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:77:69:60
chr2	26496612	.	T	.	.	PASS	END=26496623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	26496624	.	T	.	.	PASS	END=26496667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	26496668	.	T	.	.	PASS	END=26496669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	26499890	.	C	.	.	PASS	END=26499901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	26499902	.	C	.	.	PASS	END=26499992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	26499993	.	T	.	.	PASS	END=26500033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	26500034	.	T	.	.	PASS	END=26500052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:90:60
chr2	26500053	.	T	.	.	PASS	END=26500060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr2	26500061	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:45:60
chr2	26500062	.	A	.	.	PASS	END=26500064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	26500065	.	A	.	.	PASS	END=26500066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:42:60
chr2	26500067	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:66:60
chr2	26500068	.	C	.	.	PASS	END=26500072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:36:60
chr2	26500073	.	T	.	.	PASS	END=26500074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr2	26500075	.	G	.	66.11	PASS	DP=28;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:18:28:36.11:60:36
chr2	26500076	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:51:60
chr2	26500077	.	C	.	63.09	PASS	DP=27;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:18:27:33.09:60:33
chr2	26500078	.	T	.	.	PASS	END=26500079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr2	26501431	.	T	.	.	PASS	END=26501433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	26501434	.	G	.	.	PASS	END=26501459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	26501460	.	A	.	.	PASS	END=26501461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	26501462	.	G	.	.	PASS	END=26501475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr2	26501476	.	C	.	.	PASS	END=26501501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:82:60
chr2	26501502	.	G	.	.	PASS	END=26501526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	26501527	.	G	.	.	PASS	END=26501549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	26501550	.	G	.	.	PASS	END=26501596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	26501597	.	C	.	.	PASS	END=26501636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	26501637	.	T	.	.	PASS	END=26501675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	26501676	.	C	.	.	PASS	END=26501691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	26501692	.	A	.	.	PASS	END=26501713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	26501714	.	T	.	.	PASS	END=26501720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	26501952	.	G	.	.	PASS	END=26501963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	26501964	.	T	.	.	PASS	END=26501966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	26501967	.	A	.	.	PASS	END=26501978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr2	26501979	.	C	.	.	PASS	END=26502022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	26502023	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:36:60
chr2	26502024	.	T	.	.	PASS	END=26502045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr2	26502046	.	A	.	.	PASS	END=26502078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr2	26502079	.	T	.	.	PASS	END=26502114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	26502115	.	C	.	.	PASS	END=26502177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	26502178	.	T	.	.	PASS	END=26502204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	26502205	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:69:60
chr2	26502206	.	A	.	.	PASS	END=26502234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr2	26502811	.	T	.	.	PASS	END=26502837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	26502838	.	T	.	.	PASS	END=26502878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	26502879	.	A	.	.	PASS	END=26502895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	26502896	.	T	.	.	PASS	END=26502986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	26502987	.	A	.	.	PASS	END=26503033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	26503034	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:136:99:60
chr2	26505662	.	G	.	.	PASS	END=26505698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	26505699	.	G	.	.	PASS	END=26505800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	26505801	.	A	.	.	PASS	END=26505938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	26505939	.	C	.	.	PASS	END=26505965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	26505966	.	T	.	.	PASS	END=26505970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	26506934	.	T	.	.	PASS	END=26506989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	26506990	.	C	.	.	PASS	END=26507027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	26507028	.	A	.	.	PASS	END=26507123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	26507700	.	C	.	.	PASS	END=26507807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:88:60
chr2	26507808	.	A	.	.	PASS	END=26507833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr2	26507834	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr2	26507835	.	T	.	.	PASS	END=26507848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	26507849	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:70:60
chr2	26507850	.	C	.	.	PASS	END=26507859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:96:60
chr2	26507860	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:60:60
chr2	26507861	.	A	.	.	PASS	END=26507876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr2	26508224	.	T	.	.	PASS	END=26508279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	26508280	.	A	.	.	PASS	END=26508347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	26508348	.	C	.	.	PASS	END=26508371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	26508372	.	C	.	.	PASS	END=26508411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	26508412	.	A	.	.	PASS	END=26508434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	26508435	.	G	.	.	PASS	END=26508448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr2	26508449	.	A	.	.	PASS	END=26508453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr2	26508454	.	T	.	.	PASS	END=26508463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr2	26508464	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:57:60
chr2	26508465	.	C	.	.	PASS	END=26508471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	26508472	.	A	.	.	LowGQX	END=26508482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	26508483	.	C	.	.	LowGQX	END=26508490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr2	26512724	.	T	.	.	PASS	END=26512799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	26512800	.	A	.	.	PASS	END=26512866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	26512867	.	T	.	.	PASS	END=26512872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr2	26531915	.	G	.	.	LowGQX	END=26532014	GT	./.
chr2	26532370	.	C	.	.	LowGQX	END=26532456	GT	./.
chr2	26532457	.	G	.	.	LowGQX	END=26532469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26532811	.	C	.	.	LowGQX	END=26532973	GT	./.
chr2	26533035	.	G	.	.	LowGQX	END=26533134	GT	./.
chr2	26533559	.	C	.	.	LowGQX	END=26533575	GT	./.
chr2	26533576	.	A	.	.	LowGQX	END=26533605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26533606	.	A	.	.	LowGQX	.	GT	./.
chr2	26533607	.	C	.	.	LowGQX	END=26533757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26533758	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	26533759	.	A	.	.	LowGQX	END=26533769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26533770	.	C	.	.	LowGQX	END=26534049	GT	./.
chr2	26534050	.	T	.	.	LowGQX	END=26534132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534133	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:3.01:60:3
chr2	26534134	.	G	.	.	LowGQX	END=26534252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534253	.	G	.	.	LowGQX	.	GT	./.
chr2	26534254	.	G	.	.	LowGQX	END=26534275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534276	.	T	.	.	LowGQX	.	GT	./.
chr2	26534277	.	C	.	.	LowGQX	END=26534289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534290	.	G	.	.	LowGQX	.	GT	./.
chr2	26534291	.	C	.	.	LowGQX	END=26534293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534294	.	G	.	.	LowGQX	.	GT	./.
chr2	26534295	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534296	.	T	.	.	LowGQX	.	GT	./.
chr2	26534297	.	C	.	.	LowGQX	END=26534318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534319	.	C	.	.	LowGQX	END=26534448	GT	./.
chr2	26534449	.	A	.	.	LowGQX	END=26534458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534459	.	G	.	.	LowGQX	.	GT	./.
chr2	26534460	.	G	.	.	LowGQX	END=26534463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534464	.	C	.	.	LowGQX	.	GT	./.
chr2	26534465	.	C	.	.	LowGQX	END=26534516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534517	.	A	.	.	LowGQX	.	GT	./.
chr2	26534518	.	C	.	.	LowGQX	END=26534530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534531	.	A	.	.	LowGQX	.	GT	./.
chr2	26534532	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534533	.	A	.	.	LowGQX	.	GT	./.
chr2	26534534	.	T	.	.	LowGQX	END=26534541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534542	.	A	.	.	LowGQX	.	GT	./.
chr2	26534543	.	C	.	.	LowGQX	END=26534544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534545	.	A	.	.	LowGQX	.	GT	./.
chr2	26534546	.	G	.	.	LowGQX	END=26534573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534574	.	C	.	.	LowGQX	.	GT	./.
chr2	26534575	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534576	.	G	.	.	LowGQX	.	GT	./.
chr2	26534577	.	C	.	.	LowGQX	END=26534579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534580	.	T	.	.	LowGQX	.	GT	./.
chr2	26534581	.	T	.	.	LowGQX	END=26534584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534585	.	C	.	.	LowGQX	END=26534586	GT	./.
chr2	26534587	.	T	.	.	LowGQX	END=26534589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534590	.	T	.	.	LowGQX	.	GT	./.
chr2	26534591	.	T	.	.	LowGQX	END=26534592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534593	.	G	.	.	LowGQX	END=26534594	GT	./.
chr2	26534595	.	G	.	.	LowGQX	END=26534598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534599	.	A	.	.	LowGQX	END=26534663	GT	./.
chr2	26534664	.	T	.	.	LowGQX	END=26534677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534678	.	G	.	.	LowGQX	.	GT	./.
chr2	26534679	.	C	.	.	LowGQX	END=26534680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534681	.	T	.	.	LowGQX	.	GT	./.
chr2	26534682	.	G	.	.	LowGQX	END=26534686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534687	.	T	.	.	LowGQX	.	GT	./.
chr2	26534688	.	C	.	.	LowGQX	END=26534722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534723	.	T	.	.	LowGQX	.	GT	./.
chr2	26534724	.	G	.	.	LowGQX	END=26534727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534728	.	T	.	.	LowGQX	.	GT	./.
chr2	26534729	.	A	.	.	LowGQX	END=26534730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534731	.	T	.	.	LowGQX	.	GT	./.
chr2	26534732	.	C	.	.	LowGQX	END=26534741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534742	.	C	.	.	LowGQX	.	GT	./.
chr2	26534743	.	G	.	.	LowGQX	END=26534755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534756	.	G	.	.	LowGQX	.	GT	./.
chr2	26534757	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534758	.	T	.	.	LowGQX	.	GT	./.
chr2	26534759	.	G	.	.	LowGQX	END=26534800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534801	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	26534802	.	G	.	.	LowGQX	END=26534814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26534815	.	A	.	.	LowGQX	END=26534942	GT	./.
chr2	26535810	.	C	.	.	LowGQX	END=26535843	GT	./.
chr2	26535844	.	C	.	.	LowGQX	END=26535860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26535861	.	C	A	9.30	LowGQX	BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=-0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr2	26535862	.	C	.	.	LowGQX	END=26535990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	26536244	.	C	.	.	LowGQX	END=26536271	GT	./.
chr2	26536272	.	C	.	.	LowGQX	END=26536288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26536289	.	T	.	.	LowGQX	.	GT	./.
chr2	26536290	.	G	.	.	LowGQX	END=26536330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26536331	.	T	.	.	LowGQX	.	GT	./.
chr2	26536332	.	C	.	.	LowGQX	END=26536335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26536336	.	A	.	.	LowGQX	.	GT	./.
chr2	26536337	.	C	.	.	LowGQX	END=26536345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26536346	.	T	.	.	LowGQX	.	GT	./.
chr2	26536347	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26536348	.	T	.	.	LowGQX	END=26536350	GT	./.
chr2	26536351	.	C	.	.	LowGQX	END=26536352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26536353	.	C	.	.	LowGQX	.	GT	./.
chr2	26536354	.	T	.	.	LowGQX	END=26536374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26536375	.	A	.	.	LowGQX	END=26536376	GT	./.
chr2	26536377	.	G	.	.	LowGQX	END=26536381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26536382	.	C	.	.	LowGQX	END=26536383	GT	./.
chr2	26536384	.	G	.	.	LowGQX	END=26536386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26536387	.	T	.	.	LowGQX	END=26536388	GT	./.
chr2	26536389	.	G	.	.	LowGQX	END=26536390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26536391	.	T	.	.	LowGQX	.	GT	./.
chr2	26536392	.	G	.	.	LowGQX	END=26536400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26536401	.	G	.	.	LowGQX	.	GT	./.
chr2	26536402	.	G	.	.	LowGQX	END=26536423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26536424	.	G	.	.	LowGQX	.	GT	./.
chr2	26536425	.	G	.	.	LowGQX	END=26536432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26536433	.	T	.	.	LowGQX	.	GT	./.
chr2	26536434	.	G	.	.	LowGQX	END=26536441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26536627	.	C	.	.	LowGQX	END=26536683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26536684	.	A	.	.	LowGQX	END=26536771	GT	./.
chr2	26537281	.	C	.	.	LowGQX	END=26537285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26537286	.	G	.	.	LowGQX	.	GT	./.
chr2	26537287	.	C	.	.	LowGQX	END=26537290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26537291	.	C	.	.	LowGQX	.	GT	./.
chr2	26537292	.	C	.	.	LowGQX	END=26537293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26537294	.	C	.	.	LowGQX	.	GT	./.
chr2	26537295	.	T	.	.	LowGQX	END=26537303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26537304	.	C	.	.	LowGQX	.	GT	./.
chr2	26537305	.	C	.	.	LowGQX	END=26537306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26537307	.	G	.	.	LowGQX	.	GT	./.
chr2	26537308	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26537309	.	C	.	.	LowGQX	.	GT	./.
chr2	26537310	.	C	.	.	LowGQX	END=26537316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26537317	.	T	.	.	LowGQX	END=26537318	GT	./.
chr2	26537319	.	G	.	.	LowGQX	END=26537324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26537325	.	G	.	.	LowGQX	.	GT	./.
chr2	26537326	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26537327	.	T	.	.	LowGQX	.	GT	./.
chr2	26537328	.	T	.	.	LowGQX	END=26537332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26537333	.	T	.	.	LowGQX	.	GT	./.
chr2	26537334	.	G	.	.	LowGQX	END=26537337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26537338	.	A	.	.	LowGQX	.	GT	./.
chr2	26537339	.	T	.	.	LowGQX	END=26537341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26537342	.	A	.	.	LowGQX	.	GT	./.
chr2	26537343	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26537344	.	C	.	.	LowGQX	END=26537345	GT	./.
chr2	26537346	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26537347	.	C	.	.	LowGQX	END=26537348	GT	./.
chr2	26537349	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26537350	.	A	.	.	LowGQX	.	GT	./.
chr2	26537351	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26537352	.	C	.	.	LowGQX	END=26537353	GT	./.
chr2	26537354	.	G	.	.	LowGQX	END=26537355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26537356	.	A	.	.	LowGQX	END=26537357	GT	./.
chr2	26537358	.	G	.	.	LowGQX	END=26537359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26537360	.	C	.	.	LowGQX	.	GT	./.
chr2	26537361	.	A	.	.	LowGQX	END=26537364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26537365	.	G	.	.	LowGQX	END=26537430	GT	./.
chr2	26537431	.	C	.	.	LowGQX	END=26537491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26538389	.	C	.	.	LowGQX	END=26538391	GT	./.
chr2	26538392	.	G	.	.	LowGQX	END=26538571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26538572	.	A	.	.	LowGQX	END=26538635	GT	./.
chr2	26539142	.	C	.	.	LowGQX	END=26539316	GT	./.
chr2	26539779	.	C	.	.	LowGQX	END=26539958	GT	./.
chr2	26540347	.	C	.	.	LowGQX	END=26540367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26540368	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	26540369	.	G	.	.	LowGQX	END=26540370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26540371	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	26540372	.	C	.	.	LowGQX	END=26540384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26540385	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	26540386	.	C	.	.	LowGQX	END=26540387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26540388	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	26540389	.	G	.	.	LowGQX	END=26540417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26540418	.	C	.	.	LowGQX	END=26540446	GT	./.
chr2	26540827	.	C	.	.	LowGQX	END=26540991	GT	./.
chr2	26541739	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26541740	.	C	.	.	LowGQX	END=26541917	GT	./.
chr2	26568988	.	C	.	.	LowGQX	END=26569157	GT	./.
chr2	26587099	.	C	.	.	LowGQX	END=26587197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26587198	.	C	.	.	LowGQX	.	GT	./.
chr2	26587199	.	T	.	.	LowGQX	END=26587203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26587204	.	A	.	.	LowGQX	.	GT	./.
chr2	26587205	.	T	.	.	LowGQX	END=26587210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26587211	.	G	.	.	LowGQX	.	GT	./.
chr2	26587212	.	C	.	.	LowGQX	END=26587214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26587215	.	C	.	.	LowGQX	.	GT	./.
chr2	26587216	.	C	.	.	LowGQX	END=26587222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26587223	.	G	.	.	LowGQX	.	GT	./.
chr2	26587224	.	A	.	.	LowGQX	END=26587230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26587231	.	T	.	.	LowGQX	.	GT	./.
chr2	26587232	.	A	.	.	LowGQX	END=26587253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26587699	.	G	.	.	LowGQX	END=26587808	GT	./.
chr2	26590001	.	C	.	.	LowGQX	END=26590100	GT	./.
chr2	26596234	.	G	.	.	LowGQX	END=26596497	GT	./.
chr2	26597907	.	G	.	.	LowGQX	END=26598016	GT	./.
chr2	26606141	.	A	.	.	LowGQX	END=26606240	GT	./.
chr2	26607826	.	G	.	.	LowGQX	END=26608007	GT	./.
chr2	26609221	.	G	.	.	LowGQX	END=26609404	GT	./.
chr2	26611872	.	G	.	.	LowGQX	END=26611971	GT	./.
chr2	26624826	.	A	.	.	LowGQX	END=26625014	GT	./.
chr2	26637206	.	T	.	.	LowGQX	END=26637298	GT	./.
chr2	26637299	.	G	.	.	LowGQX	END=26637305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26644154	.	A	.	.	LowGQX	END=26644270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26647137	.	A	.	.	LowGQX	END=26647324	GT	./.
chr2	26652494	.	A	.	.	LowGQX	END=26652635	GT	./.
chr2	26653357	.	G	.	.	LowGQX	END=26653487	GT	./.
chr2	26653488	.	T	.	.	LowGQX	END=26653491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653492	.	A	.	.	LowGQX	.	GT	./.
chr2	26653493	.	T	.	.	LowGQX	END=26653501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653502	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr2	26653503	.	G	.	.	LowGQX	END=26653504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653505	.	C	.	.	LowGQX	.	GT	./.
chr2	26653506	.	T	.	.	LowGQX	END=26653513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653514	.	C	.	.	LowGQX	.	GT	./.
chr2	26653515	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653516	.	T	.	.	LowGQX	.	GT	./.
chr2	26653517	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653518	.	G	.	.	LowGQX	.	GT	./.
chr2	26653519	.	C	.	.	LowGQX	END=26653520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653521	.	G	.	.	LowGQX	.	GT	./.
chr2	26653648	.	T	.	.	LowGQX	END=26653649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653650	.	G	.	.	LowGQX	.	GT	./.
chr2	26653651	.	T	.	.	LowGQX	END=26653652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653653	.	G	.	.	LowGQX	.	GT	./.
chr2	26653654	.	A	.	.	LowGQX	END=26653655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653656	.	A	.	.	LowGQX	END=26653657	GT	./.
chr2	26653658	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653659	.	A	.	.	LowGQX	END=26653660	GT	./.
chr2	26653661	.	T	.	.	LowGQX	END=26653665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653666	.	G	.	.	LowGQX	.	GT	./.
chr2	26653667	.	T	.	.	LowGQX	END=26653669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653670	.	A	.	.	LowGQX	.	GT	./.
chr2	26653671	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653672	.	C	.	.	LowGQX	.	GT	./.
chr2	26653673	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653674	.	C	.	.	LowGQX	END=26653676	GT	./.
chr2	26653677	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653678	.	G	.	.	LowGQX	.	GT	./.
chr2	26653679	.	A	.	.	LowGQX	END=26653680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653681	.	C	.	.	LowGQX	.	GT	./.
chr2	26653682	.	T	.	.	LowGQX	END=26653685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653686	.	G	.	.	LowGQX	.	GT	./.
chr2	26653687	.	G	.	.	LowGQX	END=26653688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653689	.	C	.	.	LowGQX	.	GT	./.
chr2	26653690	.	A	.	.	LowGQX	END=26653693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653694	.	A	.	.	LowGQX	END=26653695	GT	./.
chr2	26653696	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653697	.	A	.	.	LowGQX	.	GT	./.
chr2	26653698	.	G	.	.	LowGQX	END=26653701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653702	.	A	.	.	LowGQX	.	GT	./.
chr2	26653703	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653704	.	A	.	.	LowGQX	.	GT	./.
chr2	26653705	.	T	.	.	LowGQX	END=26653707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653708	.	G	.	.	LowGQX	.	GT	./.
chr2	26653709	.	A	.	.	LowGQX	END=26653710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653711	.	C	.	.	LowGQX	.	GT	./.
chr2	26653712	.	A	.	.	LowGQX	END=26653715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653716	.	C	.	.	LowGQX	END=26653717	GT	./.
chr2	26653718	.	T	.	.	LowGQX	END=26653719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653720	.	C	.	.	LowGQX	.	GT	./.
chr2	26653721	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653722	.	G	.	.	LowGQX	.	GT	./.
chr2	26653723	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653724	.	C	.	.	LowGQX	.	GT	./.
chr2	26653725	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653726	.	C	.	.	LowGQX	.	GT	./.
chr2	26653727	.	A	.	.	LowGQX	END=26653729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653730	.	A	.	.	LowGQX	.	GT	./.
chr2	26653731	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653732	.	G	.	.	LowGQX	.	GT	./.
chr2	26653733	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653734	.	C	.	.	LowGQX	.	GT	./.
chr2	26653735	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653736	.	A	.	.	LowGQX	END=26653739	GT	./.
chr2	26653740	.	G	.	.	LowGQX	END=26653744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26653745	.	A	.	.	LowGQX	.	GT	./.
chr2	26653746	.	G	.	.	LowGQX	END=26653747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26654750	.	A	.	.	LowGQX	END=26654789	GT	./.
chr2	26654790	.	C	.	.	LowGQX	END=26654876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26663244	.	A	.	.	LowGQX	END=26663387	GT	./.
chr2	26667048	.	C	.	.	LowGQX	END=26667226	GT	./.
chr2	26667582	.	A	.	.	LowGQX	END=26667614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26667615	.	T	C	14.90	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.45;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	26667616	.	G	.	.	LowGQX	END=26667695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26667696	.	C	.	.	LowGQX	END=26667818	GT	./.
chr2	26671211	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26671212	.	C	.	.	LowGQX	.	GT	./.
chr2	26671213	.	T	.	.	LowGQX	END=26671214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26671215	.	T	.	.	LowGQX	.	GT	./.
chr2	26671216	.	G	.	.	LowGQX	END=26671227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26671228	.	A	.	.	LowGQX	END=26671229	GT	./.
chr2	26671230	.	T	.	.	LowGQX	END=26671232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26671233	.	G	.	.	LowGQX	END=26671234	GT	./.
chr2	26671235	.	T	.	.	LowGQX	END=26671236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26671237	.	A	.	.	LowGQX	.	GT	./.
chr2	26671238	.	C	.	.	LowGQX	END=26671240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26671241	.	T	.	.	LowGQX	.	GT	./.
chr2	26671242	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26671243	.	T	.	.	LowGQX	END=26671310	GT	./.
chr2	26671557	.	A	.	.	LowGQX	END=26671673	GT	./.
chr2	26672859	.	C	.	.	LowGQX	END=26672957	GT	./.
chr2	26672958	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26673455	.	C	.	.	LowGQX	END=26673554	GT	./.
chr2	26676186	.	A	.	.	LowGQX	END=26676419	GT	./.
chr2	26677513	.	A	.	.	LowGQX	END=26677660	GT	./.
chr2	26677941	.	C	.	.	LowGQX	END=26678103	GT	./.
chr2	26679308	.	C	.	.	LowGQX	END=26679407	GT	./.
chr2	26680857	.	T	.	.	PASS	END=26680870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr2	26680871	.	G	.	.	PASS	END=26680885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	26680886	.	G	.	.	PASS	END=26680908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	26680909	.	C	.	.	PASS	END=26680918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr2	26680919	.	G	.	.	PASS	END=26680925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr2	26680926	.	T	.	.	PASS	END=26680929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr2	26680930	.	A	.	.	PASS	END=26680933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:63:60
chr2	26680934	.	T	.	.	PASS	END=26680973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr2	26680974	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:69:60
chr2	26680975	.	A	.	.	PASS	END=26680991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	26680992	.	C	.	.	PASS	END=26681013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	26681014	.	T	.	.	PASS	END=26681116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	26681117	.	G	.	.	PASS	END=26681139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	26682842	.	C	.	.	PASS	END=26683039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr2	26683040	.	G	.	.	PASS	END=26683101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr2	26683102	.	G	.	.	PASS	END=26683121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr2	26683122	.	G	.	.	PASS	END=26683124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	26683464	.	A	.	.	PASS	END=26683484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	26683485	.	G	.	.	PASS	END=26683511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr2	26683512	.	C	.	.	PASS	END=26683601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr2	26683602	.	G	.	.	PASS	END=26683666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:272:99:60
chr2	26683669	.	C	.	.	PASS	END=26683838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr2	26683839	.	T	.	.	PASS	END=26683861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr2	26683862	.	C	.	.	PASS	END=26683884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	26683885	.	C	.	.	PASS	END=26683906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	26683907	.	A	.	.	PASS	END=26683931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	26683932	.	A	.	.	PASS	END=26683941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	26683942	.	T	.	.	PASS	END=26683949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	26684513	.	G	.	.	PASS	END=26684515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	26684516	.	T	.	.	PASS	END=26684518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:39:60
chr2	26684519	.	T	.	.	PASS	END=26684521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	26684522	.	C	.	.	PASS	END=26684523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:60
chr2	26684524	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:69:60
chr2	26684525	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:51:60
chr2	26684526	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:72:60
chr2	26684527	.	C	.	.	PASS	END=26684528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:54:60
chr2	26684529	.	G	.	.	PASS	END=26684530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	26684531	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:45:60
chr2	26684532	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:69:60
chr2	26684533	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:23:60
chr2	26684534	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:69:60
chr2	26684535	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:60
chr2	26684536	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:78:60
chr2	26684537	.	A	.	.	PASS	END=26684538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:39:60
chr2	26684539	.	C	.	.	PASS	END=26684543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr2	26684544	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:36:20:60
chr2	26684545	.	T	.	.	PASS	END=26684552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr2	26684553	.	C	.	.	PASS	END=26684554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:75:60
chr2	26684555	.	G	.	.	PASS	END=26684577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr2	26684578	.	G	.	.	PASS	END=26684609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	26684610	.	G	.	.	PASS	END=26684627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	26684628	.	C	.	.	PASS	END=26684705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	26684706	.	G	A	1186.56	PASS	BaseQRankSum=2.782;DP=129;Dels=0.00;FS=3.401;HRun=2;HaplotypeScore=6.6709;MQ=60;MQ0=0;MQRankSum=1.227;QD=9.20;ReadPosRankSum=-0.089;SB=-635.49	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:77,52:129:99:1217,0,1962:60:99:0.403
chr2	26684707	.	A	.	.	PASS	END=26684760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	26684761	.	T	.	.	PASS	END=26684775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	26684776	.	T	.	.	PASS	END=26684829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	26684830	.	C	.	.	PASS	END=26684856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	26684900	.	A	.	.	PASS	END=26684910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	26684911	.	A	.	.	PASS	END=26684943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	26684944	.	C	.	.	PASS	END=26684972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:95:60
chr2	26684973	.	A	.	.	PASS	END=26685002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	26685003	.	C	.	.	PASS	END=26685080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	26685081	.	C	.	.	PASS	END=26685095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	26685096	.	A	.	.	PASS	END=26685100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	26686300	.	A	.	.	PASS	END=26686325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	26686326	.	T	.	.	PASS	END=26686347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	26686348	.	C	.	.	PASS	END=26686416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	26686417	.	T	.	.	PASS	END=26686459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	26686460	.	A	.	.	PASS	END=26686483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	26686484	.	T	.	.	PASS	END=26686490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	26686781	.	T	.	.	PASS	END=26686814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	26686815	.	G	.	.	PASS	END=26686923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	26686924	.	A	.	.	PASS	END=26686967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	26686968	.	C	.	.	PASS	END=26686985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	26686986	.	G	.	.	PASS	END=26687006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	26687007	.	G	.	.	PASS	END=26687025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	26687686	.	T	.	.	PASS	END=26687725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	26687726	.	T	.	.	PASS	END=26687760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	26687761	.	G	A	1307.44	PASS	BaseQRankSum=0.271;DP=146;Dels=0.00;FS=0.670;HRun=0;HaplotypeScore=7.6258;MQ=60;MQ0=0;MQRankSum=1.439;QD=8.96;ReadPosRankSum=1.479;SB=-706.34	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:84,62:146:99:1337,0,2047:60:99:0.425
chr2	26687762	.	C	.	.	PASS	END=26687821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	26687822	.	C	.	.	PASS	END=26687871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	26687872	.	G	.	.	PASS	END=26687894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	26687895	.	T	.	.	PASS	END=26687917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	26687918	.	G	.	.	PASS	END=26687933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr2	26687934	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr2	26687935	.	G	.	.	PASS	END=26687944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:96:60
chr2	26687945	.	C	.	.	PASS	END=26687948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr2	26688489	.	G	.	.	LowGQX	END=26688496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	26688497	.	A	.	.	LowGQX	END=26688515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	26688516	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	26688517	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	26688518	.	C	.	.	PASS	END=26688520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	26688521	.	T	.	.	LowGQX	END=26688522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr2	26688523	.	C	.	.	PASS	END=26688539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	26688540	.	G	.	.	PASS	END=26688543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	26688544	.	A	.	.	PASS	END=26688547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	26688548	.	G	.	.	PASS	END=26688560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr2	26688561	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:57:60
chr2	26688562	.	C	.	.	PASS	END=26688563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr2	26688564	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:51:60
chr2	26688565	.	A	.	.	PASS	END=26688570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr2	26688571	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:72:60
chr2	26688572	.	G	.	.	PASS	END=26688593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	26688594	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:66:60
chr2	26688595	.	T	.	.	PASS	END=26688645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	26688646	.	C	.	.	PASS	END=26688709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	26688710	.	C	.	.	PASS	END=26688750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	26688751	.	A	.	.	PASS	END=26688761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	26688766	.	C	.	.	PASS	END=26688787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	26688788	.	T	.	.	PASS	END=26688830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	26688831	.	G	.	.	PASS	END=26688937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	26688938	.	C	.	.	PASS	END=26688960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	26688961	.	G	.	.	PASS	END=26688984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	26688985	.	C	.	.	PASS	END=26688995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	26689531	.	A	.	.	PASS	END=26689575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:92:60
chr2	26689576	.	T	.	.	PASS	END=26689600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:94:60
chr2	26689601	.	A	.	.	PASS	END=26689691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	26689692	.	G	.	.	PASS	END=26689737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	26689738	.	G	.	.	PASS	END=26689751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	26689752	.	T	.	.	PASS	END=26689760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr2	26689761	.	C	.	.	PASS	END=26689770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr2	26689916	.	G	.	.	PASS	END=26689935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr2	26689936	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:99:60
chr2	26689937	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:75:60
chr2	26689938	.	T	.	.	PASS	END=26689947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	26689948	.	C	.	.	PASS	END=26689964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	26689965	.	A	.	.	PASS	END=26690000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	26690001	.	G	.	.	PASS	END=26690108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	26690109	.	A	.	.	PASS	END=26690149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	26690150	.	T	.	.	PASS	END=26690152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	26690182	.	C	.	.	PASS	END=26690202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:87:60
chr2	26690203	.	C	.	.	PASS	END=26690219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	26690220	.	C	.	.	PASS	END=26690268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	26690269	.	G	.	.	PASS	END=26690344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	26690345	.	T	.	.	PASS	END=26690361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	26690362	.	C	.	.	PASS	END=26690370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	26690371	.	T	.	.	PASS	END=26690406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	26690407	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:69:60
chr2	26690408	.	C	.	.	PASS	END=26690418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr2	26690419	.	G	.	.	PASS	END=26690420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr2	26691225	.	A	.	.	PASS	END=26691228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr2	26691229	.	C	.	.	PASS	END=26691254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr2	26691255	.	G	.	.	PASS	END=26691278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:82:60
chr2	26691279	.	C	.	.	PASS	END=26691285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	26691286	.	G	.	.	PASS	END=26691336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	26691337	.	A	.	.	PASS	END=26691393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	26693410	.	G	.	.	PASS	END=26693435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr2	26693436	.	C	.	.	PASS	END=26693470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	26693471	.	G	.	.	PASS	END=26693502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	26693503	.	G	.	.	PASS	END=26693583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	26693584	.	C	.	.	PASS	END=26693604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	26693605	.	G	.	.	PASS	END=26693624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	26693625	.	T	.	.	PASS	END=26693636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	26693637	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:72:60
chr2	26693638	.	A	.	.	PASS	END=26693640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr2	26693938	.	C	.	.	PASS	END=26693950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:80:60
chr2	26693951	.	C	.	.	PASS	END=26693974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	26693975	.	G	.	.	PASS	END=26694073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	26695312	.	T	.	.	PASS	END=26695327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	26695328	.	A	.	.	PASS	END=26695359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	26695360	.	G	.	.	PASS	END=26695476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	26695477	.	G	.	.	PASS	END=26695499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	26695500	.	A	.	.	PASS	END=26695514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	26695515	.	T	.	.	PASS	END=26695553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	26695554	.	A	.	.	PASS	END=26695566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr2	26695567	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:68:60
chr2	26695568	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:93:60
chr2	26695949	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:99:60
chr2	26695950	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:66:60
chr2	26695951	.	C	.	.	PASS	END=26695975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr2	26695976	.	G	.	.	PASS	END=26695992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:78:60
chr2	26695993	.	G	.	.	PASS	END=26696022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:87:60
chr2	26696023	.	G	.	.	PASS	END=26696073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	26696074	.	G	.	.	PASS	END=26696146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	26696147	.	C	.	.	PASS	END=26696213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	26696223	.	G	.	.	PASS	END=26696249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	26696250	.	T	.	.	PASS	END=26696274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	26696275	.	A	.	.	PASS	END=26696405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr2	26696406	.	C	.	.	PASS	END=26696430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr2	26696431	.	A	.	.	PASS	END=26696465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	26696466	.	A	.	.	PASS	END=26696486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	26696808	.	G	.	.	PASS	END=26696850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	26696851	.	C	.	.	PASS	END=26696867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	26696868	.	G	.	.	PASS	END=26696993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	26696994	.	C	.	.	PASS	END=26697010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	26697011	.	G	.	.	PASS	END=26697023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	26697024	.	A	.	.	PASS	END=26697029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	26697330	.	A	.	.	PASS	END=26697333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:39:60
chr2	26697334	.	C	.	.	PASS	END=26697335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr2	26697336	.	A	.	.	PASS	END=26697337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:39:60
chr2	26697338	.	C	.	.	PASS	END=26697342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr2	26697343	.	A	.	.	PASS	END=26697345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr2	26697346	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:57:60
chr2	26697347	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:24:60
chr2	26697348	.	C	.	.	PASS	END=26697353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr2	26697354	.	C	.	.	PASS	END=26697363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	26697364	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:46:60
chr2	26697365	.	T	.	.	PASS	END=26697396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	26697397	.	G	.	.	PASS	END=26697415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:83:60
chr2	26697416	.	C	.	.	PASS	END=26697518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:93:60
chr2	26697519	.	C	.	.	PASS	END=26697551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr2	26697552	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:64:60
chr2	26697553	.	A	.	.	PASS	END=26697566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	26697567	.	C	.	.	PASS	END=26697577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr2	26697578	.	T	.	.	PASS	END=26697593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	26698176	.	A	.	.	PASS	END=26698206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	26698207	.	G	.	.	PASS	END=26698231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	26698232	.	A	.	.	PASS	END=26698314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	26698315	.	A	.	.	PASS	END=26698351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	26698352	.	C	.	.	PASS	END=26698370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr2	26698371	.	G	.	.	PASS	END=26698380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr2	26698381	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:87:60
chr2	26698382	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:57:60
chr2	26698383	.	C	.	.	PASS	END=26698388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr2	26698389	.	A	.	.	PASS	END=26698395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr2	26698396	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:39:60
chr2	26698397	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:18:60
chr2	26698398	.	A	.	.	PASS	END=26698399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:51:60
chr2	26698400	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:42:60
chr2	26698401	.	G	.	.	PASS	END=26698406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:60:60
chr2	26698407	.	G	.	.	PASS	END=26698408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:45:60
chr2	26698409	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:72:60
chr2	26698410	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:54:60
chr2	26698411	.	G	.	.	PASS	END=26698412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr2	26698731	.	G	.	.	PASS	END=26698753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	26698754	.	G	.	.	PASS	END=26698769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	26698770	.	C	.	.	PASS	END=26698782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	26698783	.	T	.	.	PASS	END=26698857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	26698858	.	A	.	.	PASS	END=26698933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	26698934	.	A	.	.	PASS	END=26698983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	26698984	.	G	.	.	PASS	END=26698997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr2	26698998	.	G	.	.	PASS	END=26699125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr2	26699126	.	C	G	2679.67	PASS	BaseQRankSum=1.300;DP=213;Dels=0.00;FS=6.016;HRun=0;HaplotypeScore=16.1504;MQ=60;MQ0=0;MQRankSum=-0.195;QD=12.58;ReadPosRankSum=-0.152;SB=-1559.79	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:104,107:213:99:2710,0,2487:60:99:0.507
chr2	26699127	.	A	.	.	PASS	END=26699146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr2	26699147	.	T	.	.	PASS	END=26699182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	26699183	.	C	.	.	PASS	END=26699208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	26699209	.	A	.	.	PASS	END=26699236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	26699708	.	C	.	.	PASS	END=26699734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:92:60
chr2	26699735	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:69:99:60
chr2	26699736	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:68:54:60
chr2	26699737	.	T	.	.	PASS	END=26699739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	26699740	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:71:62:60
chr2	26699741	.	T	.	.	PASS	END=26699757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	26699758	.	C	.	.	PASS	END=26699788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	26699789	.	G	.	.	PASS	END=26699890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	26699891	.	G	.	.	PASS	END=26699924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	26699925	.	G	.	.	PASS	END=26699942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	26699943	.	G	.	.	PASS	END=26699952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	26699953	.	C	.	.	PASS	END=26699962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	26699989	.	C	.	.	PASS	END=26700034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	26700035	.	C	T	1907.34	PASS	BaseQRankSum=2.440;DP=150;Dels=0.00;FS=4.057;HRun=0;HaplotypeScore=18.1492;MQ=60;MQ0=0;MQRankSum=1.475;QD=12.72;ReadPosRankSum=0.663;SB=-1087.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:76,73:150:99:1937,0,1905:60:99:0.490
chr2	26700036	.	G	.	.	PASS	END=26700102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	26700103	.	C	.	.	PASS	END=26700154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	26700155	.	T	.	.	PASS	END=26700204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	26700205	.	G	.	.	PASS	END=26700207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	26700233	.	T	.	.	PASS	END=26700307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	26700308	.	G	.	.	PASS	END=26700350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	26700351	.	T	.	.	PASS	END=26700372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	26700373	.	G	A	863.53	PASS	BaseQRankSum=-0.525;DP=81;Dels=0.00;FS=0.940;HRun=0;HaplotypeScore=10.4357;MQ=60;MQ0=0;MQRankSum=-0.901;QD=10.66;ReadPosRankSum=2.519;SB=-379.40	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,38:81:99:894,0,1187:60:99:0.475
chr2	26700374	.	G	.	.	PASS	END=26700415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	26700416	.	A	.	.	PASS	END=26700425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	26700466	.	T	.	.	PASS	END=26700482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr2	26700483	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:45:60
chr2	26700484	.	T	.	.	PASS	END=26700492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr2	26700493	.	C	T	464.33	PASS	BaseQRankSum=-3.762;DP=54;Dels=0.00;FS=5.105;HRun=0;HaplotypeScore=32.3002;MQ=60;MQ0=0;MQRankSum=-0.479;QD=8.60;ReadPosRankSum=0.987;SB=-101.51	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:22,28:54:99:494,0,676:60:99:0.560
chr2	26700494	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:57:60
chr2	26700495	.	C	.	.	PASS	END=26700518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:90:60
chr2	26700519	.	G	.	.	PASS	END=26700546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	26700547	.	C	.	.	PASS	END=26700564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	26700565	.	G	.	.	PASS	END=26700669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	26700670	.	T	.	.	PASS	END=26700693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	26700694	.	A	.	.	PASS	END=26700715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:86:60
chr2	26700716	.	T	.	.	PASS	END=26700738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	26700739	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:45:60
chr2	26700740	.	C	.	.	PASS	END=26700751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr2	26700752	.	C	.	.	PASS	END=26700754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr2	26700755	.	T	.	.	PASS	END=26700760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	26700761	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:84:60
chr2	26702081	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:99:60
chr2	26702082	.	G	A	634.94	PASS	BaseQRankSum=-0.115;DP=50;Dels=0.00;FS=1.523;HRun=0;HaplotypeScore=5.7865;MQ=60;MQ0=0;MQRankSum=0.199;QD=12.70;ReadPosRankSum=1.014;SB=-172.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:20,28:50:99:665,0,561:60:99:0.583
chr2	26702083	.	C	.	.	PASS	END=26702108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr2	26702109	.	C	.	.	PASS	END=26702125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	26702126	.	C	.	.	PASS	END=26702162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	26702163	.	G	.	.	PASS	END=26702247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	26702248	.	A	.	.	PASS	END=26702304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	26702305	.	G	.	.	PASS	END=26702354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	26702355	.	G	.	.	PASS	END=26702384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	26702385	.	G	.	.	PASS	END=26702493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr2	26702494	.	A	.	.	PASS	END=26702538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	26702539	.	C	.	.	PASS	END=26702553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	26702554	.	G	.	.	PASS	END=26702572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	26703020	.	G	.	.	PASS	END=26703029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	26703030	.	C	.	.	PASS	END=26703045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	26703046	.	A	.	.	PASS	END=26703067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	26703068	.	C	.	.	PASS	END=26703113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	26703114	.	G	.	.	PASS	END=26703185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr2	26703186	.	G	.	.	PASS	END=26703213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	26703214	.	G	.	.	PASS	END=26703222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	26703223	.	T	.	.	PASS	END=26703230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	26703603	.	A	.	.	PASS	END=26703627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	26703628	.	G	.	.	PASS	END=26703637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	26703638	.	G	.	.	PASS	END=26703663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	26703664	.	G	.	.	PASS	END=26703676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	26703677	.	C	.	.	PASS	END=26703703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr2	26703704	.	G	.	.	PASS	END=26703804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr2	26703805	.	T	.	.	PASS	END=26703825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	26703826	.	C	.	.	PASS	END=26703835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	26703836	.	C	.	.	PASS	END=26703850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	26703851	.	A	.	.	PASS	END=26703865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr2	26703866	.	T	.	.	PASS	END=26703876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr2	26703877	.	C	.	.	PASS	END=26703878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr2	26703879	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr2	26703880	.	G	.	.	PASS	END=26703881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr2	26703882	.	G	.	.	PASS	END=26703883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr2	26703884	.	C	.	.	PASS	END=26703886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr2	26703887	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:45:60
chr2	26703888	.	G	.	.	PASS	END=26703891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr2	26703892	.	A	.	.	PASS	END=26703897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr2	26703898	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:29:60
chr2	26703899	.	T	.	.	PASS	END=26703906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr2	26703907	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:75:60
chr2	26703908	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:57:60
chr2	26703909	.	G	.	.	PASS	END=26703911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	26703912	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:51:60
chr2	26703913	.	C	.	.	PASS	END=26703921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr2	26703922	.	T	.	.	PASS	END=26703925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr2	26703926	.	C	.	.	PASS	END=26703927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:35:60
chr2	26703928	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:57:60
chr2	26705223	.	C	.	.	PASS	END=26705256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	26705257	.	G	.	.	PASS	END=26705284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	26705285	.	T	.	.	PASS	END=26705407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr2	26705408	.	A	.	.	PASS	END=26705435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	26705436	.	T	.	.	PASS	END=26705461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	26705462	.	T	.	.	PASS	END=26705489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	26705490	.	G	.	.	PASS	END=26705505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	26705506	.	A	.	.	PASS	END=26705511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:59
chr2	26706279	.	T	.	.	PASS	END=26706289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr2	26706290	.	G	.	.	PASS	END=26706292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr2	26706293	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:60:60
chr2	26706294	.	C	.	.	PASS	END=26706298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr2	26706299	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:59:60
chr2	26706300	.	C	.	.	PASS	END=26706305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr2	26706306	.	C	.	.	PASS	END=26706322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr2	26706323	.	C	.	.	PASS	END=26706352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	26706353	.	G	.	.	PASS	END=26706409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	26706410	.	C	.	.	PASS	END=26706509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	26706510	.	C	.	.	PASS	END=26706547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	26706548	.	C	.	.	PASS	END=26706567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr2	26707291	.	G	.	.	PASS	END=26707356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	26707357	.	T	.	.	PASS	END=26707450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	26707451	.	A	.	.	PASS	END=26707493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	26707494	.	C	.	.	PASS	END=26707521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	26707522	.	C	.	.	PASS	END=26707534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	26707535	.	A	.	.	PASS	END=26707550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:87:60
chr2	26707551	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:57:60
chr2	26707552	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:78:60
chr2	26712028	.	G	.	.	PASS	END=26712036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	26712037	.	G	.	.	PASS	END=26712051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	26712052	.	A	.	.	PASS	END=26712080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	26712081	.	G	.	.	PASS	END=26712132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	26712133	.	C	.	.	PASS	END=26712179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	26712180	.	C	.	.	PASS	END=26712196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	26712197	.	C	.	.	PASS	END=26712214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	26712495	.	G	.	.	PASS	END=26712527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	26712528	.	G	.	.	PASS	END=26712612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	26712613	.	A	.	.	PASS	END=26712633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	26712634	.	C	.	.	PASS	END=26712659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	26717759	.	C	.	.	PASS	END=26717791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	26717792	.	C	.	.	PASS	END=26717903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	26717904	.	C	.	.	PASS	END=26717947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	26717948	.	G	.	.	PASS	END=26717986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:96:60
chr2	26717987	.	T	.	.	PASS	END=26717992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	26724571	.	C	.	.	PASS	END=26724605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	26724606	.	C	.	.	PASS	END=26724655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	26724656	.	A	.	.	PASS	END=26724715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	26724716	.	A	.	.	PASS	END=26724724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	26724725	.	T	G	968.27	PASS	BaseQRankSum=-1.313;DP=70;Dels=0.00;FS=3.721;HRun=4;HaplotypeScore=7.5754;MQ=60;MQ0=0;MQRankSum=1.540;QD=13.83;ReadPosRankSum=0.282;SB=-477.65	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,42:70:99:998,0,620:60:99:0.600
chr2	26724726	.	G	.	.	PASS	END=26724727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	26725117	.	C	.	.	PASS	END=26725131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	26725132	.	G	.	.	PASS	END=26725150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr2	26725151	.	G	.	.	PASS	END=26725161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr2	26725162	.	A	.	.	PASS	END=26725192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:95:60
chr2	26725193	.	G	.	.	PASS	END=26725206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	26725207	.	G	.	.	PASS	END=26725311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	26725312	.	C	.	.	PASS	END=26725337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	26725338	.	A	.	.	PASS	END=26725345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	26726589	.	G	.	.	PASS	END=26726607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	26726608	.	G	.	.	PASS	END=26726654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	26726655	.	C	.	.	PASS	END=26726722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	26726723	.	G	.	.	PASS	END=26726753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	26726754	.	C	.	.	PASS	END=26726764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	26733545	.	T	.	.	LowGQX	END=26733644	GT	./.
chr2	26739235	.	C	.	.	PASS	END=26739242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	26739243	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:63:60
chr2	26739244	.	G	.	.	PASS	END=26739245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr2	26739246	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:54:60
chr2	26739247	.	T	A	1075.25	PASS	DP=35;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;QD=30.72;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,35:35:87.27:1108,87,0:60:87:1.000
chr2	26739248	.	T	.	.	PASS	END=26739270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr2	26739271	.	G	.	.	PASS	END=26739294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:84:60
chr2	26739295	.	C	.	.	PASS	END=26739311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	26739312	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:83:75:60
chr2	26739313	.	C	.	.	PASS	END=26739429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	26739430	.	T	.	.	PASS	END=26739459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	26739460	.	A	.	.	PASS	END=26739472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr2	26739473	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:69:60
chr2	26739474	.	G	.	.	PASS	END=26739488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr2	26739489	.	T	.	.	PASS	END=26739494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr2	26739495	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:0:60
chr2	26739496	.	C	.	.	PASS	END=26739504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr2	26739505	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:45:60
chr2	26739506	.	G	.	.	PASS	END=26739509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	26739510	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:24:60
chr2	26739511	.	C	.	.	PASS	END=26739518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	26741827	.	C	.	.	PASS	END=26741857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	26741858	.	A	.	.	PASS	END=26741896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	26741897	.	T	.	.	PASS	END=26741955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	26741956	.	C	.	.	PASS	END=26741960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	26741961	.	G	A	2519.60	PASS	DP=90;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=16.0976;MQ=60;MQ0=0;QD=28.00;SB=-1223.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,89:90:99:2553,190,0:60:99:1.000
chr2	26741962	.	G	.	.	PASS	END=26742008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	26742009	.	A	.	.	PASS	END=26742025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	26742026	.	G	.	.	PASS	END=26742028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	26750649	.	A	.	.	PASS	END=26750660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	26750661	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:30:60
chr2	26750662	.	G	.	.	PASS	END=26750676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr2	26750677	.	C	.	.	PASS	END=26750692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	26750693	.	C	.	.	PASS	END=26750753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	26750754	.	C	.	.	PASS	END=26750807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	26750808	.	T	.	.	PASS	END=26750828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	26750829	.	A	.	.	PASS	END=26750839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:93:60
chr2	26760533	.	G	.	.	PASS	END=26760549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	26760550	.	G	.	.	PASS	END=26760567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	26760568	.	G	.	.	PASS	END=26760610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	26760611	.	G	.	.	PASS	END=26760689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	26760690	.	A	.	.	PASS	END=26760693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	26781310	.	G	.	.	PASS	END=26781325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	26781326	.	G	.	.	PASS	END=26781374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	26781375	.	T	.	.	PASS	END=26781425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	26781426	.	A	.	.	PASS	END=26781446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	26781447	.	T	.	.	PASS	END=26781461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:87:60
chr2	26781462	.	T	.	.	PASS	END=26781490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr2	26785468	.	T	.	.	LowGQX	END=26785567	GT	./.
chr2	26794952	.	T	.	.	LowGQX	END=26795051	GT	./.
chr2	26798768	.	A	.	.	LowGQX	END=26799045	GT	./.
chr2	26800332	.	G	.	.	LowGQX	END=26800376	GT	./.
chr2	26800377	.	A	.	.	LowGQX	END=26800402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26800403	.	A	.	.	LowGQX	.	GT	./.
chr2	26800404	.	G	.	.	LowGQX	END=26800421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26800422	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	26800423	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26800424	.	G	.	.	LowGQX	END=26800426	GT	./.
chr2	26800427	.	C	.	.	LowGQX	END=26800440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26800441	.	C	.	.	LowGQX	.	GT	./.
chr2	26800442	.	C	.	.	LowGQX	END=26800445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26800446	.	C	.	.	LowGQX	.	GT	./.
chr2	26800447	.	T	.	.	LowGQX	END=26800455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26800456	.	C	.	.	LowGQX	.	GT	./.
chr2	26800457	.	C	.	.	LowGQX	END=26800498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26801634	.	T	.	.	LowGQX	END=26801733	GT	./.
chr2	26802160	.	A	.	.	LowGQX	END=26802308	GT	./.
chr2	26804197	.	C	.	.	LowGQX	END=26804296	GT	./.
chr2	26805688	.	C	.	.	LowGQX	END=26805787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26806655	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	26806656	.	C	.	.	LowGQX	END=26806678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26806679	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	26806680	.	G	.	.	LowGQX	END=26806681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26806682	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	26806683	.	C	.	.	LowGQX	END=26806688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26806689	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	26806690	.	C	.	.	LowGQX	END=26806693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26806694	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	26806695	.	C	.	.	LowGQX	END=26806703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26806704	.	T	.	.	LowGQX	.	GT	./.
chr2	26806705	.	C	.	.	LowGQX	END=26806732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26806733	.	T	.	.	LowGQX	.	GT	./.
chr2	26806734	.	C	.	.	LowGQX	END=26806768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26818042	.	A	.	.	LowGQX	END=26818187	GT	./.
chr2	26828345	.	A	.	.	LowGQX	END=26828444	GT	./.
chr2	26846281	.	C	.	.	LowGQX	END=26846327	GT	./.
chr2	26846328	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26846329	.	C	.	.	LowGQX	.	GT	./.
chr2	26846330	.	T	.	.	LowGQX	END=26846392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26846393	.	G	.	.	LowGQX	.	GT	./.
chr2	26846394	.	G	.	.	LowGQX	END=26846473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	26852276	.	A	.	.	LowGQX	END=26852376	GT	./.
chr2	26863369	.	G	.	.	LowGQX	END=26863468	GT	./.
chr2	26864106	.	A	.	.	LowGQX	END=26864205	GT	./.
chr2	26915742	.	C	.	.	LowGQX	END=26916028	GT	./.
chr2	26950533	.	A	.	.	LowGQX	END=26951090	GT	./.
chr2	26951091	.	C	.	.	LowGQX	END=26951102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26951103	.	C	.	.	LowGQX	END=26951104	GT	./.
chr2	26951105	.	C	.	.	LowGQX	END=26951106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26951107	.	T	.	.	LowGQX	END=26951108	GT	./.
chr2	26951109	.	A	.	.	LowGQX	END=26951143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26951144	.	A	.	.	LowGQX	.	GT	./.
chr2	26951145	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26951146	.	G	.	.	LowGQX	.	GT	./.
chr2	26951147	.	T	.	.	LowGQX	END=26951164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26951165	.	A	.	.	LowGQX	.	GT	./.
chr2	26951166	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26951167	.	T	.	.	LowGQX	END=26951168	GT	./.
chr2	26951169	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26951170	.	C	.	.	LowGQX	.	GT	./.
chr2	26951171	.	A	.	.	LowGQX	END=26951248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26951249	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	26951250	.	C	.	.	LowGQX	END=26951302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	26951303	.	G	T	9.30	LowGQ;LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=3.10;ReadPosRankSum=-0.736;SB=-25.55	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:25.53:39,0,26:60:9:0.667
chr2	26951304	.	C	.	.	LowGQX	END=26951349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26951350	.	C	.	.	LowGQX	END=26951351	GT	./.
chr2	26951352	.	A	.	.	LowGQX	END=26951354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26951355	.	C	.	.	LowGQX	.	GT	./.
chr2	26951356	.	T	.	.	LowGQX	END=26951364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26951365	.	A	.	.	LowGQX	.	GT	./.
chr2	26951366	.	G	.	.	LowGQX	END=26951367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26951368	.	T	.	.	LowGQX	.	GT	./.
chr2	26951369	.	C	.	.	LowGQX	END=26951381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26951382	.	T	.	.	LowGQX	END=26951438	GT	./.
chr2	26987207	.	C	.	.	LowGQX	.	GT	./.
chr2	26987208	.	G	.	.	LowGQX	END=26987219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26987220	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	26987221	.	G	.	.	LowGQX	END=26987222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26987223	.	C	.	.	LowGQX	.	GT	./.
chr2	26987224	.	T	.	.	LowGQX	END=26987225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26987226	.	G	.	.	LowGQX	.	GT	./.
chr2	26987227	.	A	.	.	LowGQX	END=26987306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26997106	.	C	.	.	LowGQX	END=26997205	GT	./.
chr2	26997910	.	A	.	.	LowGQX	END=26997992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	26997993	.	T	.	.	LowGQX	END=26998085	GT	./.
chr2	26998330	.	A	.	.	LowGQX	END=26998546	GT	./.
chr2	26999238	.	A	.	.	LowGQX	END=26999352	GT	./.
chr2	27000908	.	A	.	.	LowGQX	END=27000930	GT	./.
chr2	27000931	.	T	.	.	LowGQX	END=27000939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27000940	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27000941	.	G	.	.	LowGQX	END=27000955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27000956	.	C	.	.	LowGQX	.	GT	./.
chr2	27000957	.	T	.	.	LowGQX	END=27001001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27001002	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27001003	.	A	.	.	LowGQX	END=27001016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27001017	.	G	.	.	LowGQX	.	GT	./.
chr2	27001018	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27001019	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27001020	.	T	.	.	LowGQX	END=27001021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27001022	.	C	.	5.68	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr2	27001023	.	T	.	.	LowGQX	END=27001026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27001027	.	A	.	.	LowGQX	.	GT	./.
chr2	27001028	.	G	.	.	LowGQX	END=27001062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27001063	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27001064	.	G	.	.	LowGQX	END=27001067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27001068	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27001069	.	A	.	.	LowGQX	END=27001081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27001082	.	T	.	.	LowGQX	END=27001381	GT	./.
chr2	27009012	.	G	.	.	LowGQX	END=27009166	GT	./.
chr2	27014944	.	G	.	.	LowGQX	END=27015110	GT	./.
chr2	27015344	.	G	.	.	LowGQX	END=27015443	GT	./.
chr2	27015613	.	C	.	.	LowGQX	END=27015712	GT	./.
chr2	27016011	.	A	.	.	LowGQX	END=27016149	GT	./.
chr2	27121366	.	A	.	.	LowGQX	END=27121630	GT	./.
chr2	27147753	.	A	.	.	LowGQX	END=27147915	GT	./.
chr2	27150119	.	A	.	.	LowGQX	END=27150200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27150201	.	C	.	.	LowGQX	.	GT	./.
chr2	27150202	.	A	.	.	LowGQX	END=27150225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27150226	.	C	.	.	LowGQX	END=27150260	GT	./.
chr2	27150261	.	C	.	.	LowGQX	END=27150275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27150276	.	T	.	.	LowGQX	.	GT	./.
chr2	27150277	.	G	.	.	LowGQX	END=27150298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27150299	.	A	.	.	LowGQX	.	GT	./.
chr2	27150300	.	G	.	.	LowGQX	END=27150301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27150302	.	C	.	.	LowGQX	.	GT	./.
chr2	27151108	.	C	.	.	LowGQX	END=27151207	GT	./.
chr2	27154481	.	T	.	.	LowGQX	END=27154559	GT	./.
chr2	27154560	.	C	.	.	LowGQX	END=27154567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27154568	.	T	.	.	LowGQX	.	GT	./.
chr2	27154569	.	C	.	.	LowGQX	END=27154572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27154573	.	T	.	.	LowGQX	.	GT	./.
chr2	27154574	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27154575	.	T	.	.	LowGQX	.	GT	./.
chr2	27154576	.	G	.	.	LowGQX	END=27154580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27156114	.	T	.	.	LowGQX	END=27156213	GT	./.
chr2	27157444	.	A	.	.	LowGQX	END=27157604	GT	./.
chr2	27162897	.	A	.	.	LowGQX	END=27163042	GT	./.
chr2	27164816	.	A	.	.	LowGQX	.	GT	./.
chr2	27164817	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27164818	.	G	.	.	LowGQX	END=27164819	GT	./.
chr2	27164820	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27164821	.	G	.	.	LowGQX	.	GT	./.
chr2	27164822	.	G	.	.	LowGQX	END=27164827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27164828	.	A	.	.	LowGQX	.	GT	./.
chr2	27164829	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27164830	.	A	.	.	LowGQX	END=27164962	GT	./.
chr2	27165409	.	A	.	.	LowGQX	END=27165620	GT	./.
chr2	27167522	.	A	.	.	LowGQX	END=27167694	GT	./.
chr2	27169771	.	C	.	.	LowGQX	END=27169870	GT	./.
chr2	27245085	.	G	.	.	LowGQX	END=27245209	GT	./.
chr2	27246198	.	A	.	.	LowGQX	END=27246380	GT	./.
chr2	27246381	.	G	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	27246382	.	T	.	.	LowGQX	END=27246438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27246439	.	A	.	.	LowGQX	.	GT	./.
chr2	27246440	.	T	.	.	LowGQX	END=27246455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27246456	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:3.01:60:3
chr2	27246457	.	C	.	.	LowGQX	END=27246478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	27246479	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	27246480	.	A	.	.	LowGQX	END=27246490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	27246491	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	27246492	.	C	.	.	LowGQX	END=27246507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	27246508	.	A	.	2.30	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0:60:0
chr2	27246509	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	27246510	.	G	.	.	LowGQX	END=27246511	GT	./.
chr2	27246512	.	A	.	.	LowGQX	END=27246513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	27246514	.	A	.	.	LowGQX	.	GT	./.
chr2	27246515	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	27246516	.	G	.	.	LowGQX	.	GT	./.
chr2	27246517	.	C	.	.	LowGQX	END=27246519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	27246520	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	27246521	.	C	.	.	LowGQX	END=27246532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	27246533	.	T	.	.	LowGQX	.	GT	./.
chr2	27246534	.	G	.	.	LowGQX	END=27246543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	27246962	.	A	.	.	LowGQX	END=27247026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27247027	.	T	.	.	LowGQX	.	GT	./.
chr2	27247028	.	T	.	.	LowGQX	END=27247117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27247118	.	C	.	.	LowGQX	END=27247167	GT	./.
chr2	27248449	.	A	.	.	LowGQX	END=27248637	GT	./.
chr2	27248746	.	A	.	.	LowGQX	END=27248902	GT	./.
chr2	27249133	.	T	.	.	LowGQX	END=27249222	GT	./.
chr2	27249223	.	C	.	.	LowGQX	END=27249232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27255861	.	C	.	.	LowGQX	END=27255921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27255922	.	A	.	.	LowGQX	END=27256036	GT	./.
chr2	27256933	.	A	.	.	LowGQX	END=27257136	GT	./.
chr2	27258001	.	A	.	.	LowGQX	END=27258151	GT	./.
chr2	27258152	.	T	.	.	LowGQX	END=27258155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27258460	.	A	.	.	LowGQX	END=27258598	GT	./.
chr2	27258830	.	C	.	.	LowGQX	END=27258929	GT	./.
chr2	27259353	.	A	.	.	LowGQX	END=27259462	GT	./.
chr2	27259564	.	C	.	.	LowGQX	END=27259663	GT	./.
chr2	27259943	.	A	.	.	LowGQX	END=27260048	GT	./.
chr2	27260427	.	A	.	.	LowGQX	END=27260440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	27260441	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	27260442	.	C	.	.	LowGQX	END=27260461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	27260462	.	A	.	.	LowGQX	END=27260468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	27260469	.	G	A	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=4.771;HRun=3;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=0.727;QD=0.79;ReadPosRankSum=0.727;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,1:4:30.29:30,0,66:60:3:0.250
chr2	27260470	.	T	.	.	LowGQX	END=27260475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	27260476	.	C	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr2	27260477	.	A	.	.	LowGQX	END=27260485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr2	27260486	.	A	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr2	27260487	.	A	.	.	LowGQX	END=27260499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr2	27260500	.	C	.	.	LowGQX	END=27260524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	27260525	.	C	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr2	27260526	.	C	.	.	LowGQX	END=27260531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	27260532	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	27260533	.	G	.	.	LowGQX	END=27260572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	27260613	.	A	.	.	LowGQX	END=27260624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27260625	.	C	.	.	LowGQX	END=27260626	GT	./.
chr2	27260627	.	C	.	.	LowGQX	END=27260771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27260900	.	G	.	.	LowGQX	END=27260974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27260975	.	C	.	.	LowGQX	END=27261107	GT	./.
chr2	27261327	.	C	.	.	LowGQX	END=27261328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	27261329	.	A	G	47.39	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=5;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=23.69;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:79,6,0:60:6:1.000
chr2	27261330	.	G	.	.	LowGQX	END=27261419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27261420	.	T	.	.	LowGQX	.	GT	./.
chr2	27261421	.	G	.	.	LowGQX	END=27261426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27261568	.	A	.	.	LowGQX	END=27261685	GT	./.
chr2	27261913	.	A	.	.	LowGQX	END=27261963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27261964	.	T	.	.	LowGQX	END=27262034	GT	./.
chr2	27262607	.	A	.	.	LowGQX	END=27262707	GT	./.
chr2	27262896	.	A	.	.	LowGQX	END=27263068	GT	./.
chr2	27263211	.	A	.	.	LowGQX	END=27263366	GT	./.
chr2	27263577	.	A	.	.	LowGQX	END=27263707	GT	./.
chr2	27275825	.	C	.	.	LowGQX	END=27276043	GT	./.
chr2	27276268	.	A	.	.	LowGQX	END=27276443	GT	./.
chr2	27276762	.	A	.	.	LowGQX	END=27276781	GT	./.
chr2	27276782	.	G	.	.	LowGQX	END=27276826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27276827	.	A	.	.	LowGQX	.	GT	./.
chr2	27276828	.	C	.	.	LowGQX	END=27276872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27276873	.	A	.	.	LowGQX	.	GT	./.
chr2	27276874	.	A	.	.	LowGQX	END=27276929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27277496	.	A	.	.	LowGQX	END=27277623	GT	./.
chr2	27277624	.	G	.	.	LowGQX	END=27277644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27277645	.	C	.	.	LowGQX	.	GT	./.
chr2	27277646	.	C	.	.	LowGQX	END=27277677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27277941	.	A	.	.	LowGQX	END=27277952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27277953	.	T	.	.	LowGQX	.	GT	./.
chr2	27277954	.	A	.	.	LowGQX	END=27277976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27277977	.	A	.	.	LowGQX	.	GT	./.
chr2	27277978	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27277979	.	A	.	.	LowGQX	.	GT	./.
chr2	27277980	.	C	.	.	LowGQX	END=27277983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27277984	.	A	.	.	LowGQX	.	GT	./.
chr2	27277985	.	T	.	.	LowGQX	END=27277999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278000	.	A	.	.	LowGQX	.	GT	./.
chr2	27278001	.	A	.	.	LowGQX	END=27278014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278015	.	T	.	.	LowGQX	.	GT	./.
chr2	27278016	.	T	.	.	LowGQX	END=27278017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278018	.	A	.	.	LowGQX	.	GT	./.
chr2	27278019	.	T	.	.	LowGQX	END=27278020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278021	.	C	.	.	LowGQX	.	GT	./.
chr2	27278022	.	T	.	.	LowGQX	END=27278043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278044	.	C	.	.	LowGQX	.	GT	./.
chr2	27278045	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278046	.	A	.	.	LowGQX	END=27278047	GT	./.
chr2	27278048	.	A	.	.	LowGQX	END=27278051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278052	.	T	.	.	LowGQX	END=27278053	GT	./.
chr2	27278054	.	C	.	.	LowGQX	END=27278061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278062	.	C	.	.	LowGQX	END=27278063	GT	./.
chr2	27278064	.	T	.	.	LowGQX	END=27278066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278067	.	T	.	.	LowGQX	.	GT	./.
chr2	27278068	.	C	.	.	LowGQX	END=27278074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278075	.	C	.	.	LowGQX	END=27278123	GT	./.
chr2	27278548	.	A	.	.	LowGQX	END=27278670	GT	./.
chr2	27278671	.	T	.	.	LowGQX	END=27278707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278708	.	T	.	.	LowGQX	.	GT	./.
chr2	27278709	.	C	.	.	LowGQX	END=27278712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278713	.	C	.	.	LowGQX	.	GT	./.
chr2	27278714	.	C	.	.	LowGQX	END=27278719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278720	.	C	.	.	LowGQX	.	GT	./.
chr2	27278721	.	T	.	.	LowGQX	END=27278722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278723	.	C	.	.	LowGQX	.	GT	./.
chr2	27278724	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278725	.	G	.	.	LowGQX	.	GT	./.
chr2	27278726	.	T	.	.	LowGQX	END=27278734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278735	.	T	.	.	LowGQX	.	GT	./.
chr2	27278736	.	G	.	.	LowGQX	END=27278737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278738	.	A	.	.	LowGQX	.	GT	./.
chr2	27278739	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278740	.	A	.	.	LowGQX	END=27278741	GT	./.
chr2	27278742	.	A	.	.	LowGQX	END=27278746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278747	.	A	.	.	LowGQX	.	GT	./.
chr2	27278748	.	C	.	.	LowGQX	END=27278754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278755	.	C	.	.	LowGQX	END=27278756	GT	./.
chr2	27278757	.	A	.	.	LowGQX	END=27278763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278764	.	G	.	.	LowGQX	.	GT	./.
chr2	27278765	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278766	.	T	.	.	LowGQX	END=27278767	GT	./.
chr2	27278768	.	A	.	.	LowGQX	END=27278775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278776	.	C	.	.	LowGQX	END=27278778	GT	./.
chr2	27278779	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278780	.	C	.	.	LowGQX	.	GT	./.
chr2	27278781	.	A	.	.	LowGQX	END=27278792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278793	.	T	.	.	LowGQX	END=27278795	GT	./.
chr2	27278796	.	C	.	.	LowGQX	END=27278801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278802	.	A	.	.	LowGQX	END=27278803	GT	./.
chr2	27278804	.	C	.	.	LowGQX	END=27278805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278806	.	T	.	.	LowGQX	.	GT	./.
chr2	27278807	.	G	.	.	LowGQX	END=27278810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278811	.	A	.	.	LowGQX	END=27278814	GT	./.
chr2	27278815	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr2	27278816	.	C	.	.	LowGQX	END=27278818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278819	.	A	.	.	LowGQX	END=27278939	GT	./.
chr2	27278940	.	G	.	.	LowGQX	END=27278993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27278994	.	T	.	.	LowGQX	END=27279008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	27279489	.	A	.	.	LowGQX	.	GT	./.
chr2	27279490	.	G	.	.	LowGQX	END=27279555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27279556	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27279557	.	A	.	.	LowGQX	END=27279567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27279568	.	G	.	.	LowGQX	.	GT	./.
chr2	27279569	.	A	.	.	LowGQX	END=27279597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27279598	.	T	.	.	LowGQX	END=27279662	GT	./.
chr2	27280169	.	A	.	.	LowGQX	END=27280192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27280193	.	A	.	.	LowGQX	.	GT	./.
chr2	27280194	.	A	.	.	LowGQX	END=27280248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27280249	.	C	.	.	LowGQX	END=27280308	GT	./.
chr2	27281266	.	A	.	.	LowGQX	END=27281472	GT	./.
chr2	27282056	.	A	.	.	LowGQX	END=27282339	GT	./.
chr2	27290360	.	A	.	.	LowGQX	END=27290633	GT	./.
chr2	27291498	.	A	.	.	LowGQX	END=27291614	GT	./.
chr2	27291890	.	T	.	.	LowGQX	END=27291909	GT	./.
chr2	27291910	.	G	.	.	LowGQX	END=27291989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27292439	.	A	.	.	LowGQX	END=27292516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27292517	.	C	T	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr2	27292518	.	C	.	.	LowGQX	END=27292576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	27292958	.	A	.	.	LowGQX	END=27293133	GT	./.
chr2	27294216	.	T	.	.	LowGQX	END=27294330	GT	./.
chr2	27301921	.	G	.	.	LowGQX	END=27302131	GT	./.
chr2	27303017	.	A	.	.	LowGQX	END=27303117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27303118	.	C	.	.	LowGQX	END=27303140	GT	./.
chr2	27303598	.	A	.	.	LowGQX	END=27303633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	27303634	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	27303635	.	C	.	.	LowGQX	END=27303677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr2	27303678	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	27303679	.	T	.	.	LowGQX	END=27303729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27303730	.	T	.	.	LowGQX	.	GT	./.
chr2	27303731	.	C	.	.	LowGQX	END=27303751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27303752	.	C	.	.	LowGQX	.	GT	./.
chr2	27303753	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27303754	.	C	.	.	LowGQX	END=27303822	GT	./.
chr2	27304949	.	A	.	.	LowGQX	END=27304953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27304954	.	C	.	.	LowGQX	.	GT	./.
chr2	27304955	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27304956	.	G	.	.	LowGQX	.	GT	./.
chr2	27304957	.	G	.	.	LowGQX	END=27304970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27304971	.	G	.	.	LowGQX	END=27304973	GT	./.
chr2	27304974	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27304975	.	A	.	.	LowGQX	END=27304976	GT	./.
chr2	27304977	.	C	.	.	LowGQX	END=27304990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27304991	.	G	.	.	LowGQX	END=27304992	GT	./.
chr2	27304993	.	T	.	.	LowGQX	END=27304997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27304998	.	A	.	.	LowGQX	END=27304999	GT	./.
chr2	27305000	.	C	.	.	LowGQX	END=27305007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305008	.	A	.	.	LowGQX	.	GT	./.
chr2	27305009	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305010	.	G	.	.	LowGQX	.	GT	./.
chr2	27305011	.	A	.	.	LowGQX	END=27305012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305013	.	C	.	.	LowGQX	.	GT	./.
chr2	27305014	.	T	.	.	LowGQX	END=27305020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305021	.	C	.	.	LowGQX	.	GT	./.
chr2	27305022	.	C	.	.	LowGQX	END=27305024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305025	.	C	.	.	LowGQX	END=27305053	GT	./.
chr2	27305054	.	C	.	.	LowGQX	END=27305056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305057	.	G	.	.	LowGQX	.	GT	./.
chr2	27305058	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305059	.	C	.	.	LowGQX	.	GT	./.
chr2	27305060	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305061	.	G	.	.	LowGQX	.	GT	./.
chr2	27305062	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305063	.	G	.	.	LowGQX	.	GT	./.
chr2	27305064	.	G	.	.	LowGQX	END=27305066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305067	.	G	.	.	LowGQX	.	GT	./.
chr2	27305068	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305069	.	G	.	.	LowGQX	.	GT	./.
chr2	27305070	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305071	.	A	.	.	LowGQX	END=27305075	GT	./.
chr2	27305076	.	G	.	.	LowGQX	END=27305089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305090	.	C	.	.	LowGQX	END=27305091	GT	./.
chr2	27305092	.	T	.	.	LowGQX	END=27305095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305096	.	C	.	.	LowGQX	.	GT	./.
chr2	27305097	.	G	.	.	LowGQX	END=27305099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305100	.	A	.	.	LowGQX	.	GT	./.
chr2	27305101	.	G	.	.	LowGQX	END=27305110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305111	.	A	.	.	LowGQX	.	GT	./.
chr2	27305112	.	G	.	.	LowGQX	END=27305117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305118	.	G	.	.	LowGQX	.	GT	./.
chr2	27305119	.	C	.	.	LowGQX	END=27305124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305125	.	C	.	.	LowGQX	END=27305126	GT	./.
chr2	27305127	.	C	.	.	LowGQX	END=27305131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305132	.	T	.	.	LowGQX	END=27305133	GT	./.
chr2	27305134	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305135	.	G	.	.	LowGQX	.	GT	./.
chr2	27305136	.	G	.	.	LowGQX	END=27305144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305145	.	A	.	.	LowGQX	.	GT	./.
chr2	27305146	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305147	.	C	.	.	LowGQX	.	GT	./.
chr2	27305148	.	C	.	.	LowGQX	END=27305152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305153	.	T	.	.	LowGQX	.	GT	./.
chr2	27305154	.	G	.	.	LowGQX	END=27305156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305157	.	A	.	.	LowGQX	.	GT	./.
chr2	27305158	.	T	.	.	LowGQX	END=27305161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305162	.	G	.	.	LowGQX	.	GT	./.
chr2	27305163	.	C	.	.	LowGQX	END=27305176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305177	.	C	.	.	LowGQX	.	GT	./.
chr2	27305178	.	C	.	.	LowGQX	END=27305187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305188	.	G	.	.	LowGQX	.	GT	./.
chr2	27305189	.	C	.	.	LowGQX	END=27305194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305195	.	C	.	.	LowGQX	.	GT	./.
chr2	27305196	.	A	.	.	LowGQX	END=27305203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305204	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	27305205	.	C	.	.	LowGQX	END=27305399	GT	./.
chr2	27305400	.	G	.	.	LowGQX	END=27305420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305421	.	A	.	.	LowGQX	.	GT	./.
chr2	27305422	.	A	.	.	LowGQX	END=27305424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305425	.	T	.	.	LowGQX	.	GT	./.
chr2	27305426	.	G	.	.	LowGQX	END=27305466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305467	.	T	.	.	LowGQX	END=27305468	GT	./.
chr2	27305469	.	G	.	.	LowGQX	END=27305485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305486	.	C	.	.	LowGQX	.	GT	./.
chr2	27305487	.	C	.	.	LowGQX	END=27305488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305489	.	T	.	.	LowGQX	.	GT	./.
chr2	27305490	.	C	.	.	LowGQX	END=27305493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305494	.	A	.	.	LowGQX	END=27305495	GT	./.
chr2	27305496	.	T	.	.	LowGQX	END=27305501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305502	.	T	.	.	LowGQX	.	GT	./.
chr2	27305503	.	C	.	.	LowGQX	END=27305521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305522	.	A	.	.	LowGQX	.	GT	./.
chr2	27305523	.	C	.	.	LowGQX	END=27305529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27305530	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27305531	.	G	.	.	LowGQX	END=27305535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27305536	.	A	.	.	LowGQX	.	GT	./.
chr2	27305537	.	G	.	.	LowGQX	END=27305548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27305549	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27305550	.	G	.	.	LowGQX	END=27305551	GT	./.
chr2	27305552	.	C	.	.	LowGQX	END=27305562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305563	.	C	.	.	LowGQX	.	GT	./.
chr2	27305564	.	A	.	.	LowGQX	END=27305567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305568	.	A	.	.	LowGQX	.	GT	./.
chr2	27305569	.	C	.	.	LowGQX	END=27305571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305572	.	T	.	.	LowGQX	.	GT	./.
chr2	27305573	.	G	.	.	LowGQX	END=27305574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305575	.	T	.	.	LowGQX	.	GT	./.
chr2	27305576	.	G	.	.	LowGQX	END=27305578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305579	.	T	.	.	LowGQX	.	GT	./.
chr2	27305580	.	G	.	.	LowGQX	END=27305592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305593	.	C	.	.	LowGQX	.	GT	./.
chr2	27305594	.	A	.	.	LowGQX	END=27305598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305599	.	T	.	.	LowGQX	END=27305600	GT	./.
chr2	27305601	.	G	.	.	LowGQX	END=27305621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305622	.	G	.	.	LowGQX	.	GT	./.
chr2	27305623	.	G	.	.	LowGQX	END=27305636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305637	.	T	.	.	LowGQX	.	GT	./.
chr2	27305638	.	A	.	.	LowGQX	END=27305640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305641	.	C	.	.	LowGQX	.	GT	./.
chr2	27305642	.	C	.	.	LowGQX	END=27305645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305646	.	T	.	.	LowGQX	.	GT	./.
chr2	27305647	.	T	.	.	LowGQX	END=27305651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305652	.	T	.	.	LowGQX	.	GT	./.
chr2	27305653	.	C	.	.	LowGQX	END=27305658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305659	.	T	.	.	LowGQX	.	GT	./.
chr2	27305660	.	G	.	.	LowGQX	END=27305672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27305673	.	G	.	.	LowGQX	END=27306474	GT	./.
chr2	27306475	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306476	.	G	.	.	LowGQX	.	GT	./.
chr2	27306477	.	G	.	.	LowGQX	END=27306484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306485	.	G	.	.	LowGQX	END=27306486	GT	./.
chr2	27306487	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306488	.	C	.	.	LowGQX	.	GT	./.
chr2	27306489	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306490	.	G	.	.	LowGQX	.	GT	./.
chr2	27306491	.	T	.	.	LowGQX	END=27306495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306496	.	T	.	.	LowGQX	END=27306497	GT	./.
chr2	27306498	.	T	.	.	LowGQX	END=27306499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306500	.	T	.	.	LowGQX	END=27306501	GT	./.
chr2	27306502	.	A	.	.	LowGQX	END=27306504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306505	.	T	.	.	LowGQX	.	GT	./.
chr2	27306506	.	T	.	.	LowGQX	END=27306510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306511	.	G	.	.	LowGQX	END=27306512	GT	./.
chr2	27306513	.	C	.	.	LowGQX	END=27306515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306516	.	C	.	.	LowGQX	.	GT	./.
chr2	27306517	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306518	.	G	.	.	LowGQX	END=27306519	GT	./.
chr2	27306520	.	A	.	.	LowGQX	END=27306521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306522	.	G	.	.	LowGQX	END=27306523	GT	./.
chr2	27306524	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306525	.	G	.	.	LowGQX	.	GT	./.
chr2	27306526	.	C	.	.	LowGQX	END=27306530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306531	.	G	.	.	LowGQX	.	GT	./.
chr2	27306532	.	A	.	.	LowGQX	END=27306536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306537	.	G	.	.	LowGQX	END=27306538	GT	./.
chr2	27306539	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306540	.	A	.	.	LowGQX	END=27306541	GT	./.
chr2	27306542	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306543	.	G	.	.	LowGQX	.	GT	./.
chr2	27306544	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306545	.	G	.	.	LowGQX	.	GT	./.
chr2	27306546	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306547	.	G	.	.	LowGQX	END=27306548	GT	./.
chr2	27306549	.	G	.	.	LowGQX	END=27306551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306552	.	G	.	.	LowGQX	.	GT	./.
chr2	27306553	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306554	.	G	.	.	LowGQX	END=27306555	GT	./.
chr2	27306556	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306557	.	C	.	.	LowGQX	END=27306560	GT	./.
chr2	27306561	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306562	.	G	.	.	LowGQX	.	GT	./.
chr2	27306563	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306564	.	G	.	.	LowGQX	.	GT	./.
chr2	27306565	.	G	.	.	LowGQX	END=27306566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306567	.	C	.	.	LowGQX	END=27306568	GT	./.
chr2	27306569	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306570	.	G	.	.	LowGQX	END=27306578	GT	./.
chr2	27306579	.	C	.	.	LowGQX	END=27306581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306582	.	G	.	.	LowGQX	END=27306583	GT	./.
chr2	27306584	.	A	.	.	LowGQX	END=27306586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306587	.	G	.	.	LowGQX	END=27306589	GT	./.
chr2	27306590	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306591	.	G	.	.	LowGQX	END=27306594	GT	./.
chr2	27306595	.	A	.	.	LowGQX	END=27306597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306598	.	G	.	.	LowGQX	.	GT	./.
chr2	27306599	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306600	.	C	.	.	LowGQX	.	GT	./.
chr2	27306601	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306602	.	C	.	.	LowGQX	.	GT	./.
chr2	27306603	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306604	.	G	.	.	LowGQX	END=27306605	GT	./.
chr2	27306606	.	T	.	.	LowGQX	END=27306608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306609	.	G	.	.	LowGQX	.	GT	./.
chr2	27306610	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306611	.	G	.	.	LowGQX	END=27306615	GT	./.
chr2	27306616	.	G	.	.	LowGQX	END=27306619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306620	.	G	.	.	LowGQX	END=27306752	GT	./.
chr2	27306753	.	C	.	.	LowGQX	END=27306757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306758	.	A	.	.	LowGQX	.	GT	./.
chr2	27306759	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306760	.	C	.	.	LowGQX	.	GT	./.
chr2	27306761	.	C	.	.	LowGQX	END=27306767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306768	.	G	.	.	LowGQX	.	GT	./.
chr2	27306769	.	A	.	.	LowGQX	END=27306770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306771	.	A	.	.	LowGQX	.	GT	./.
chr2	27306772	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306773	.	G	.	.	LowGQX	.	GT	./.
chr2	27306774	.	C	.	.	LowGQX	END=27306777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306778	.	T	.	.	LowGQX	.	GT	./.
chr2	27306779	.	C	.	.	LowGQX	END=27306781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306782	.	G	.	.	LowGQX	END=27306783	GT	./.
chr2	27306784	.	G	.	.	LowGQX	END=27306790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306791	.	G	.	.	LowGQX	.	GT	./.
chr2	27306792	.	G	.	.	LowGQX	END=27306795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306796	.	T	.	.	LowGQX	.	GT	./.
chr2	27306797	.	G	.	.	LowGQX	END=27306803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306804	.	C	.	.	LowGQX	.	GT	./.
chr2	27306805	.	G	.	.	LowGQX	END=27306807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306808	.	T	.	.	LowGQX	.	GT	./.
chr2	27306809	.	G	.	.	LowGQX	END=27306811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306812	.	T	.	.	LowGQX	.	GT	./.
chr2	27306813	.	G	.	.	LowGQX	END=27306822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306823	.	G	.	.	LowGQX	.	GT	./.
chr2	27306824	.	C	.	.	LowGQX	END=27306827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306828	.	C	.	.	LowGQX	.	GT	./.
chr2	27306829	.	T	.	.	LowGQX	END=27306833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306834	.	C	.	.	LowGQX	.	GT	./.
chr2	27306835	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306836	.	C	.	.	LowGQX	.	GT	./.
chr2	27306837	.	C	.	.	LowGQX	END=27306841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306842	.	G	.	.	LowGQX	.	GT	./.
chr2	27306843	.	G	.	.	LowGQX	END=27306844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306845	.	C	.	.	LowGQX	.	GT	./.
chr2	27306846	.	C	.	.	LowGQX	END=27306848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306849	.	C	.	.	LowGQX	END=27306850	GT	./.
chr2	27306851	.	G	.	.	LowGQX	END=27306856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306857	.	G	.	.	LowGQX	.	GT	./.
chr2	27306858	.	C	.	.	LowGQX	END=27306860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306861	.	A	.	.	LowGQX	.	GT	./.
chr2	27306862	.	G	.	.	LowGQX	END=27306869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306870	.	G	.	.	LowGQX	.	GT	./.
chr2	27306871	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306872	.	C	.	.	LowGQX	.	GT	./.
chr2	27306873	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306874	.	T	.	.	LowGQX	.	GT	./.
chr2	27306875	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306876	.	A	.	.	LowGQX	.	GT	./.
chr2	27306877	.	C	.	.	LowGQX	END=27306879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306880	.	G	.	.	LowGQX	END=27306881	GT	./.
chr2	27306882	.	G	.	.	LowGQX	END=27306893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27306894	.	G	.	.	LowGQX	.	GT	./.
chr2	27307281	.	A	.	.	LowGQX	END=27307312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27307313	.	C	.	.	LowGQX	END=27307401	GT	./.
chr2	27307818	.	A	.	.	LowGQX	END=27307917	GT	./.
chr2	27308026	.	A	.	.	LowGQX	END=27308167	GT	./.
chr2	27308544	.	A	.	.	LowGQX	END=27308549	GT	./.
chr2	27308550	.	G	.	.	LowGQX	END=27308602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27308603	.	A	.	.	LowGQX	.	GT	./.
chr2	27308604	.	C	.	.	LowGQX	END=27308740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27308741	.	T	.	.	LowGQX	.	GT	./.
chr2	27308742	.	C	.	.	LowGQX	END=27308776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27308777	.	C	.	.	LowGQX	.	GT	./.
chr2	27308778	.	G	.	.	LowGQX	END=27308802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27308803	.	C	.	.	LowGQX	END=27308885	GT	./.
chr2	27310077	.	C	.	.	PASS	END=27310112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	27310113	.	T	.	.	PASS	END=27310203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	27310204	.	A	.	.	PASS	END=27310225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr2	27310226	.	G	.	.	PASS	END=27310234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr2	27310235	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:69:60
chr2	27310236	.	C	.	.	PASS	END=27310252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	27310253	.	G	.	.	PASS	END=27310255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:87:60
chr2	27310256	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:36:60
chr2	27310257	.	T	.	.	PASS	END=27310259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	27310260	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:51:60
chr2	27310261	.	G	.	.	PASS	END=27310264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	27310265	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:54:60
chr2	27310266	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:27:60
chr2	27310267	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:66:60
chr2	27310268	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:47:60
chr2	27310269	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:69:60
chr2	27310270	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:24:60
chr2	27315149	.	T	.	.	PASS	END=27315179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	27315180	.	A	.	.	PASS	END=27315249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	27315250	.	C	.	.	PASS	END=27315251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	27315252	.	G	A	1121.93	PASS	BaseQRankSum=1.337;DP=145;Dels=0.00;FS=5.440;HRun=0;HaplotypeScore=10.4161;MQ=60;MQ0=0;MQRankSum=-0.925;QD=7.74;ReadPosRankSum=0.804;SB=-614.60	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:91,52:145:99:1152,0,2132:60:99:0.364
chr2	27315253	.	T	.	.	PASS	END=27315280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	27315281	.	C	.	.	PASS	END=27315295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	27315296	.	G	.	.	PASS	END=27315329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	27315330	.	G	.	.	PASS	END=27315344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	27315345	.	G	.	.	PASS	END=27315349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	27315350	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:60
chr2	27315351	.	C	.	.	PASS	END=27315353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr2	27315354	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:54:60
chr2	27315355	.	C	.	.	PASS	END=27315367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr2	27317294	.	C	.	.	PASS	END=27317324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	27317325	.	G	.	.	PASS	END=27317419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	27317420	.	C	.	.	PASS	END=27317471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	27317472	.	T	.	.	PASS	END=27317528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	27317529	.	C	.	.	PASS	END=27317530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	27317617	.	G	.	.	PASS	END=27317638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	27317639	.	C	.	.	PASS	END=27317667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	27317668	.	C	.	.	PASS	END=27317696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	27317697	.	G	.	.	PASS	END=27317787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	27317788	.	T	.	.	PASS	END=27317818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	27317819	.	T	.	.	PASS	END=27317834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	27317835	.	C	.	.	PASS	END=27317853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	27319546	.	C	.	.	PASS	END=27319590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	27319591	.	A	.	.	PASS	END=27319647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	27319648	.	G	.	.	PASS	END=27319686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	27319687	.	T	.	.	PASS	END=27319720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	27320320	.	A	.	.	LowGQX	END=27320322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr2	27320323	.	T	.	.	LowGQX	END=27320324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr2	27320325	.	G	.	.	LowGQX	END=27320333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	27320334	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr2	27320335	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	27320336	.	G	.	.	PASS	END=27320343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	27320344	.	G	.	.	PASS	END=27320353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr2	27320354	.	G	.	.	PASS	END=27320358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr2	27320359	.	G	.	.	PASS	END=27320374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr2	27320375	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:75:60
chr2	27320376	.	G	.	.	PASS	END=27320384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	27320385	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:73:60
chr2	27320386	.	G	.	.	PASS	END=27320412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	27320413	.	G	.	.	PASS	END=27320448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	27320449	.	A	.	.	PASS	END=27320509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	27320510	.	G	.	.	PASS	END=27320546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:93:60
chr2	27320547	.	A	.	.	PASS	END=27320568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr2	27322013	.	G	.	.	PASS	END=27322055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	27322056	.	G	.	.	PASS	END=27322135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	27322136	.	G	.	.	PASS	END=27322203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	27322237	.	G	.	.	PASS	END=27322271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	27322272	.	T	.	.	PASS	END=27322295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	27322296	.	T	.	.	PASS	END=27322308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	27322309	.	G	.	.	PASS	END=27322385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	27322386	.	T	.	.	PASS	END=27322436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	27322437	.	T	.	.	PASS	END=27322460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	27322461	.	G	.	.	PASS	END=27322500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	27322501	.	C	.	.	PASS	END=27322621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	27322622	.	C	.	.	PASS	END=27322643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	27322644	.	C	.	.	PASS	END=27322664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	27322665	.	T	.	.	PASS	END=27322686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	27322687	.	C	.	.	PASS	END=27322719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr2	27322720	.	A	.	.	PASS	END=27322729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr2	27323283	.	C	.	.	LowGQX	END=27323401	GT	./.
chr2	27323402	.	G	.	.	LowGQX	END=27323410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27324140	.	A	.	.	LowGQX	END=27324430	GT	./.
chr2	27324431	.	C	.	.	LowGQX	END=27324473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27324474	.	C	.	.	LowGQX	.	GT	./.
chr2	27324475	.	A	.	.	LowGQX	END=27324569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27324570	.	A	.	.	LowGQX	.	GT	./.
chr2	27324571	.	T	.	.	LowGQX	END=27324579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27324580	.	A	.	.	LowGQX	.	GT	./.
chr2	27324581	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27324582	.	C	.	.	LowGQX	END=27324620	GT	./.
chr2	27324621	.	G	.	.	LowGQX	END=27324637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27324638	.	T	.	.	LowGQX	.	GT	./.
chr2	27324639	.	C	.	.	LowGQX	END=27324648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27324649	.	C	.	.	LowGQX	.	GT	./.
chr2	27324650	.	A	.	.	LowGQX	END=27324655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27324656	.	C	.	.	LowGQX	.	GT	./.
chr2	27324657	.	T	.	.	LowGQX	END=27324723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27324724	.	G	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	27324725	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27324726	.	T	.	.	LowGQX	.	GT	./.
chr2	27324727	.	C	.	.	LowGQX	END=27324750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27324751	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	27324752	.	A	.	.	LowGQX	END=27324758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27324963	.	A	.	.	LowGQX	END=27325091	GT	./.
chr2	27325214	.	G	.	.	LowGQX	END=27325313	GT	./.
chr2	27325377	.	C	.	.	LowGQX	END=27325476	GT	./.
chr2	27327153	.	A	.	.	LowGQX	END=27327234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27327235	.	C	.	.	LowGQX	END=27327243	GT	./.
chr2	27327244	.	A	.	.	LowGQX	END=27327247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27327248	.	G	.	.	LowGQX	.	GT	./.
chr2	27327249	.	G	.	.	LowGQX	END=27327260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27327261	.	G	.	.	LowGQX	.	GT	./.
chr2	27327262	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27327263	.	A	.	.	LowGQX	.	GT	./.
chr2	27327264	.	T	.	.	LowGQX	END=27327270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27327271	.	T	.	.	LowGQX	.	GT	./.
chr2	27327272	.	C	.	.	LowGQX	END=27327274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27327275	.	G	.	.	LowGQX	.	GT	./.
chr2	27327276	.	G	.	.	LowGQX	END=27327286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27327287	.	T	.	.	LowGQX	.	GT	./.
chr2	27327288	.	C	.	.	LowGQX	END=27327393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27327394	.	A	.	.	LowGQX	END=27327600	GT	./.
chr2	27346809	.	A	.	.	LowGQX	END=27347104	GT	./.
chr2	27351230	.	C	.	.	LowGQX	END=27351471	GT	./.
chr2	27351811	.	A	.	.	LowGQX	END=27351818	GT	./.
chr2	27351819	.	C	.	.	LowGQX	END=27351934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27351935	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	27351936	.	C	.	.	LowGQX	END=27351947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27351948	.	T	G	14.90	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.45;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	27351949	.	A	.	.	LowGQX	END=27351997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27352157	.	G	.	.	LowGQX	END=27352256	GT	./.
chr2	27352380	.	A	.	.	LowGQX	END=27352496	GT	./.
chr2	27352620	.	A	.	.	LowGQX	END=27352797	GT	./.
chr2	27352948	.	G	.	.	LowGQX	END=27353047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27353095	.	C	.	.	LowGQX	END=27353106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27353107	.	T	.	.	LowGQX	END=27353286	GT	./.
chr2	27353399	.	A	.	.	LowGQX	END=27353614	GT	./.
chr2	27354238	.	G	.	.	LowGQX	END=27354351	GT	./.
chr2	27354352	.	A	.	.	LowGQX	END=27354359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27354360	.	C	.	.	LowGQX	END=27354362	GT	./.
chr2	27354363	.	C	.	.	LowGQX	END=27354367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27354368	.	G	.	.	LowGQX	.	GT	./.
chr2	27354369	.	A	.	.	LowGQX	END=27354375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27354376	.	C	.	.	LowGQX	END=27354377	GT	./.
chr2	27354378	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27354538	.	A	.	.	LowGQX	END=27354648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27354649	.	G	.	.	LowGQX	.	GT	./.
chr2	27354650	.	G	.	.	LowGQX	END=27354694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27354695	.	A	.	.	LowGQX	END=27354701	GT	./.
chr2	27354865	.	C	.	.	LowGQX	END=27354964	GT	./.
chr2	27355072	.	C	.	.	LowGQX	END=27355207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27355208	.	C	.	.	LowGQX	.	GT	./.
chr2	27355209	.	T	.	.	LowGQX	END=27355216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27355217	.	A	.	.	LowGQX	.	GT	./.
chr2	27355218	.	A	.	.	LowGQX	END=27355250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27355251	.	T	.	.	LowGQX	.	GT	./.
chr2	27355252	.	G	.	.	LowGQX	END=27355271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27355272	.	C	.	.	LowGQX	END=27355273	GT	./.
chr2	27355469	.	A	.	.	LowGQX	END=27355597	GT	./.
chr2	27355702	.	G	.	.	LowGQX	END=27355801	GT	./.
chr2	27355983	.	A	.	.	LowGQX	END=27356207	GT	./.
chr2	27356398	.	A	.	.	LowGQX	END=27356591	GT	./.
chr2	27357153	.	A	.	.	LowGQX	END=27357210	GT	./.
chr2	27357211	.	G	.	.	LowGQX	END=27357238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27357239	.	G	.	.	LowGQX	.	GT	./.
chr2	27357240	.	T	.	.	LowGQX	END=27357291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27359957	.	A	.	.	LowGQX	END=27360207	GT	./.
chr2	27360208	.	G	.	.	LowGQX	END=27360269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27360270	.	A	.	.	LowGQX	.	GT	./.
chr2	27360271	.	G	.	.	LowGQX	END=27360280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27360281	.	T	.	.	LowGQX	.	GT	./.
chr2	27360282	.	G	.	.	LowGQX	END=27360355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27360356	.	A	.	.	LowGQX	END=27361199	GT	./.
chr2	27372000	.	G	.	.	LowGQX	END=27372015	GT	./.
chr2	27372016	.	G	.	.	LowGQX	END=27372179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27372180	.	C	.	.	LowGQX	END=27372225	GT	./.
chr2	27372557	.	G	.	.	LowGQX	END=27372656	GT	./.
chr2	27372989	.	A	.	.	LowGQX	END=27373235	GT	./.
chr2	27375554	.	A	.	.	LowGQX	END=27375737	GT	./.
chr2	27423302	.	C	.	.	LowGQX	END=27423448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27423449	.	T	.	.	LowGQX	.	GT	./.
chr2	27423864	.	A	.	.	LowGQX	END=27423922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27423923	.	G	.	.	LowGQX	.	GT	./.
chr2	27423924	.	A	.	.	LowGQX	END=27423937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27423938	.	T	.	.	LowGQX	END=27423983	GT	./.
chr2	27424216	.	A	.	.	LowGQX	END=27424323	GT	./.
chr2	27424532	.	A	.	.	LowGQX	END=27424717	GT	./.
chr2	27424850	.	A	.	.	LowGQX	END=27424949	GT	./.
chr2	27425609	.	C	.	.	LowGQX	END=27425764	GT	./.
chr2	27426099	.	A	.	.	LowGQX	.	GT	./.
chr2	27426100	.	C	.	.	LowGQX	END=27426114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27426115	.	A	.	.	LowGQX	.	GT	./.
chr2	27426116	.	G	.	.	LowGQX	END=27426164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27426165	.	G	.	.	LowGQX	.	GT	./.
chr2	27426166	.	T	.	.	LowGQX	END=27426181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27426182	.	T	.	.	LowGQX	.	GT	./.
chr2	27426183	.	T	.	.	LowGQX	END=27426211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27426212	.	T	.	.	LowGQX	.	GT	./.
chr2	27426213	.	G	.	.	LowGQX	END=27426215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27426642	.	G	.	.	LowGQX	END=27426741	GT	./.
chr2	27427327	.	A	.	.	LowGQX	END=27427370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27427371	.	C	.	.	LowGQX	END=27427460	GT	./.
chr2	27427657	.	A	.	.	LowGQX	END=27427746	GT	./.
chr2	27427747	.	C	.	.	LowGQX	END=27427784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27427785	.	G	.	.	LowGQX	.	GT	./.
chr2	27427786	.	G	.	.	LowGQX	END=27427801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27428216	.	A	.	.	LowGQX	END=27428405	GT	./.
chr2	27428878	.	G	.	.	LowGQX	END=27428977	GT	./.
chr2	27429327	.	G	.	.	LowGQX	END=27429426	GT	./.
chr2	27429728	.	A	.	.	LowGQX	END=27429812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27429813	.	G	.	.	LowGQX	.	GT	./.
chr2	27429814	.	G	.	.	LowGQX	END=27429827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27430124	.	A	.	.	LowGQX	END=27430520	GT	./.
chr2	27435000	.	C	.	.	LowGQX	END=27435339	GT	./.
chr2	27436043	.	A	.	.	LowGQX	END=27436168	GT	./.
chr2	27438175	.	C	.	.	LowGQX	END=27438274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27438328	.	T	.	.	LowGQX	END=27438405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27438406	.	C	.	.	LowGQX	END=27438427	GT	./.
chr2	27438498	.	A	.	.	LowGQX	END=27438623	GT	./.
chr2	27439389	.	A	.	.	LowGQX	END=27439490	GT	./.
chr2	27439710	.	A	.	.	LowGQX	END=27439818	GT	./.
chr2	27440357	.	C	.	.	LowGQX	END=27440441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27440442	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27440443	.	C	.	.	LowGQX	END=27440510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27440743	.	A	.	.	LowGQX	END=27440886	GT	./.
chr2	27444084	.	A	.	.	LowGQX	END=27444217	GT	./.
chr2	27445060	.	A	.	.	LowGQX	END=27445206	GT	./.
chr2	27445385	.	A	.	.	LowGQX	END=27445433	GT	./.
chr2	27445434	.	G	.	.	LowGQX	END=27445435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27445436	.	A	.	.	LowGQX	.	GT	./.
chr2	27445437	.	C	.	.	LowGQX	END=27445488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27445489	.	G	.	.	LowGQX	.	GT	./.
chr2	27445490	.	T	.	.	LowGQX	END=27445507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27445508	.	A	.	.	LowGQX	.	GT	./.
chr2	27445509	.	C	.	.	LowGQX	END=27445521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27445522	.	A	.	.	LowGQX	.	GT	./.
chr2	27445523	.	G	.	.	LowGQX	END=27445524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27445525	.	C	.	.	LowGQX	.	GT	./.
chr2	27445526	.	A	.	.	LowGQX	END=27445530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27445732	.	A	.	.	LowGQX	END=27445737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27445738	.	T	.	.	LowGQX	.	GT	./.
chr2	27445739	.	G	.	.	LowGQX	END=27445798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27445799	.	A	.	.	LowGQX	END=27445907	GT	./.
chr2	27446429	.	A	.	.	LowGQX	END=27446618	GT	./.
chr2	27446783	.	A	.	.	LowGQX	END=27446899	GT	./.
chr2	27447211	.	A	.	.	LowGQX	END=27447360	GT	./.
chr2	27447611	.	A	.	.	LowGQX	END=27447615	GT	./.
chr2	27447616	.	A	.	.	LowGQX	END=27447746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27447876	.	A	.	.	LowGQX	END=27447903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27447904	.	T	.	.	LowGQX	.	GT	./.
chr2	27447905	.	G	.	.	LowGQX	END=27447968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27447969	.	T	.	.	LowGQX	.	GT	./.
chr2	27447970	.	G	.	.	LowGQX	END=27447988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27447989	.	C	.	.	LowGQX	END=27448083	GT	./.
chr2	27448084	.	G	.	.	LowGQX	END=27448086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27448087	.	C	.	.	LowGQX	.	GT	./.
chr2	27448088	.	G	.	.	LowGQX	END=27448091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27448092	.	C	.	.	LowGQX	END=27448093	GT	./.
chr2	27448094	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27448095	.	C	.	.	LowGQX	END=27448097	GT	./.
chr2	27448098	.	A	.	.	LowGQX	END=27448100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27448101	.	C	.	.	LowGQX	.	GT	./.
chr2	27448102	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27448103	.	C	.	.	LowGQX	END=27448104	GT	./.
chr2	27448105	.	T	.	.	LowGQX	END=27448106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27448107	.	A	.	.	LowGQX	END=27448108	GT	./.
chr2	27448109	.	C	.	.	LowGQX	END=27448112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27448113	.	T	.	.	LowGQX	.	GT	./.
chr2	27448571	.	A	.	.	LowGQX	END=27448796	GT	./.
chr2	27448997	.	A	.	.	LowGQX	END=27449189	GT	./.
chr2	27449391	.	A	.	.	LowGQX	END=27449463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27449464	.	A	.	.	LowGQX	.	GT	./.
chr2	27449465	.	C	.	.	LowGQX	END=27449513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27449514	.	T	.	.	LowGQX	.	GT	./.
chr2	27449515	.	C	.	.	LowGQX	END=27449519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27449698	.	A	.	.	LowGQX	END=27449832	GT	./.
chr2	27454334	.	A	.	.	LowGQX	END=27454381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27454382	.	G	.	.	LowGQX	END=27454407	GT	./.
chr2	27454408	.	G	.	.	LowGQX	END=27454450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27454846	.	A	.	.	LowGQX	.	GT	./.
chr2	27454847	.	G	.	.	LowGQX	END=27454860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27454861	.	C	.	.	LowGQX	.	GT	./.
chr2	27454862	.	A	.	.	LowGQX	END=27454864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27454865	.	A	.	.	LowGQX	.	GT	./.
chr2	27454866	.	G	.	.	LowGQX	END=27454883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27454884	.	G	.	.	LowGQX	.	GT	./.
chr2	27454885	.	T	.	.	LowGQX	END=27454919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27454920	.	C	.	.	LowGQX	END=27455075	GT	./.
chr2	27455076	.	G	.	.	LowGQX	END=27455094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27455314	.	A	.	.	LowGQX	END=27455316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27455317	.	A	.	.	LowGQX	.	GT	./.
chr2	27455318	.	C	.	.	LowGQX	END=27455338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27455339	.	T	.	.	LowGQX	.	GT	./.
chr2	27455340	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27455341	.	C	.	.	LowGQX	.	GT	./.
chr2	27455342	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27455343	.	T	.	.	LowGQX	END=27455344	GT	./.
chr2	27455345	.	A	.	.	LowGQX	END=27455361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27455362	.	C	.	.	LowGQX	.	GT	./.
chr2	27455363	.	C	.	.	LowGQX	END=27455364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27455365	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	27455366	.	C	.	.	LowGQX	.	GT	./.
chr2	27455367	.	A	.	.	LowGQX	END=27455436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27455437	.	G	.	.	LowGQX	END=27455442	GT	./.
chr2	27455443	.	A	.	.	LowGQX	END=27455564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27455908	.	A	.	.	LowGQX	END=27456010	GT	./.
chr2	27456178	.	A	.	.	LowGQX	END=27456216	GT	./.
chr2	27456217	.	G	.	.	LowGQX	END=27456223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27456224	.	C	.	.	LowGQX	.	GT	./.
chr2	27456225	.	C	.	.	LowGQX	END=27456229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27456230	.	C	.	.	LowGQX	.	GT	./.
chr2	27456231	.	A	.	.	LowGQX	END=27456326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27456327	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27456328	.	A	.	.	LowGQX	END=27456383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27456384	.	A	.	.	LowGQX	END=27456406	GT	./.
chr2	27456492	.	A	.	.	LowGQX	END=27456678	GT	./.
chr2	27456874	.	A	.	.	LowGQX	END=27457059	GT	./.
chr2	27457060	.	T	.	.	LowGQX	END=27457096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27457384	.	A	.	.	LowGQX	END=27457555	GT	./.
chr2	27458111	.	A	.	.	LowGQX	END=27458113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27458114	.	T	.	.	LowGQX	END=27458245	GT	./.
chr2	27458246	.	G	.	.	LowGQX	END=27458247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27458248	.	T	.	.	LowGQX	.	GT	./.
chr2	27458249	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27458250	.	T	.	.	LowGQX	END=27458251	GT	./.
chr2	27458252	.	A	.	.	LowGQX	END=27458253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27458254	.	A	.	.	LowGQX	.	GT	./.
chr2	27458255	.	T	.	.	LowGQX	END=27458262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27458263	.	A	.	.	LowGQX	.	GT	./.
chr2	27458264	.	A	.	.	LowGQX	END=27458297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27458402	.	A	.	.	LowGQX	END=27458465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27458466	.	C	.	.	LowGQX	END=27458510	GT	./.
chr2	27459150	.	A	.	.	LowGQX	END=27459349	GT	./.
chr2	27459350	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27459351	.	C	.	.	LowGQX	END=27459352	GT	./.
chr2	27459353	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27459354	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27459355	.	A	.	.	LowGQX	.	GT	./.
chr2	27459356	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27459357	.	T	.	.	LowGQX	END=27459359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27459360	.	T	.	.	LowGQX	.	GT	./.
chr2	27459361	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27459362	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27459363	.	A	.	.	LowGQX	.	GT	./.
chr2	27459364	.	T	.	.	LowGQX	END=27459367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27459368	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27459369	.	A	.	.	LowGQX	END=27459371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27459372	.	G	.	.	LowGQX	END=27459373	GT	./.
chr2	27459374	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27459375	.	C	.	.	LowGQX	END=27459376	GT	./.
chr2	27459377	.	A	.	.	LowGQX	END=27459379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27459380	.	C	.	.	LowGQX	.	GT	./.
chr2	27459381	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27459382	.	C	.	.	LowGQX	.	GT	./.
chr2	27459383	.	T	.	.	LowGQX	END=27459387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27459388	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27459389	.	G	.	.	LowGQX	END=27459391	GT	./.
chr2	27459392	.	G	.	.	LowGQX	END=27459393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27459596	.	C	.	.	LowGQX	END=27459609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27459610	.	C	.	.	LowGQX	.	GT	./.
chr2	27459611	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27459612	.	T	.	.	LowGQX	.	GT	./.
chr2	27459613	.	G	.	.	LowGQX	END=27459616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27459617	.	G	.	.	LowGQX	END=27459619	GT	./.
chr2	27459620	.	C	.	.	LowGQX	END=27459636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27459637	.	A	.	.	LowGQX	END=27459638	GT	./.
chr2	27459639	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27459640	.	C	.	.	LowGQX	END=27459641	GT	./.
chr2	27459642	.	C	.	.	LowGQX	END=27459653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27459654	.	T	.	.	LowGQX	.	GT	./.
chr2	27459655	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27459656	.	C	.	.	LowGQX	.	GT	./.
chr2	27459657	.	A	.	.	LowGQX	END=27459663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27459664	.	C	.	.	LowGQX	.	GT	./.
chr2	27459665	.	T	.	.	LowGQX	END=27459684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27459685	.	T	.	.	LowGQX	END=27459700	GT	./.
chr2	27460245	.	A	.	.	LowGQX	END=27460392	GT	./.
chr2	27460393	.	G	.	.	LowGQX	END=27460415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27460584	.	A	.	.	LowGQX	.	GT	./.
chr2	27460585	.	G	.	.	LowGQX	END=27460596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27460597	.	T	.	.	LowGQX	END=27460598	GT	./.
chr2	27460599	.	G	.	.	LowGQX	END=27460612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27460613	.	T	.	.	LowGQX	.	GT	./.
chr2	27460614	.	T	.	.	LowGQX	END=27460633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27460634	.	T	.	.	LowGQX	.	GT	./.
chr2	27460635	.	C	.	.	LowGQX	END=27460636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27460637	.	T	.	.	LowGQX	.	GT	./.
chr2	27460638	.	C	.	.	LowGQX	END=27460681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27460682	.	G	.	.	LowGQX	.	GT	./.
chr2	27460683	.	G	.	.	LowGQX	END=27460713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27460714	.	T	.	.	LowGQX	.	GT	./.
chr2	27460715	.	G	.	.	LowGQX	END=27460718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27460719	.	T	.	.	LowGQX	END=27460752	GT	./.
chr2	27460922	.	A	.	.	LowGQX	END=27460970	GT	./.
chr2	27460971	.	G	.	.	LowGQX	END=27460980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27460981	.	G	.	.	LowGQX	.	GT	./.
chr2	27460982	.	T	.	.	LowGQX	END=27460986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27460987	.	G	.	.	LowGQX	.	GT	./.
chr2	27460988	.	C	.	.	LowGQX	END=27460992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27460993	.	C	.	.	LowGQX	.	GT	./.
chr2	27460994	.	T	.	.	LowGQX	END=27460996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27460997	.	T	.	.	LowGQX	END=27460999	GT	./.
chr2	27461000	.	T	.	.	LowGQX	END=27461006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27461007	.	G	.	.	LowGQX	.	GT	./.
chr2	27461008	.	C	.	.	LowGQX	END=27461015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27461016	.	G	.	.	LowGQX	END=27461020	GT	./.
chr2	27461021	.	C	.	.	LowGQX	END=27461029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27461030	.	T	.	.	LowGQX	.	GT	./.
chr2	27461031	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27461032	.	T	.	.	LowGQX	.	GT	./.
chr2	27461033	.	G	.	.	LowGQX	END=27461034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27461035	.	C	.	.	LowGQX	.	GT	./.
chr2	27461036	.	A	.	.	LowGQX	END=27461038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27461039	.	T	.	.	LowGQX	.	GT	./.
chr2	27461040	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27461041	.	G	.	.	LowGQX	.	GT	./.
chr2	27461042	.	C	.	.	LowGQX	END=27461052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27461053	.	G	.	.	LowGQX	.	GT	./.
chr2	27461054	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27461055	.	G	.	.	LowGQX	.	GT	./.
chr2	27461056	.	G	.	.	LowGQX	END=27461057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27461297	.	A	.	.	LowGQX	END=27461502	GT	./.
chr2	27461908	.	A	.	.	LowGQX	END=27462102	GT	./.
chr2	27462197	.	A	.	.	LowGQX	END=27462340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27462341	.	T	.	.	LowGQX	.	GT	./.
chr2	27462563	.	A	.	.	LowGQX	END=27462668	GT	./.
chr2	27463131	.	A	.	.	LowGQX	END=27463231	GT	./.
chr2	27463411	.	C	.	.	LowGQX	END=27463463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27463464	.	C	.	.	LowGQX	END=27463510	GT	./.
chr2	27463752	.	A	.	.	LowGQX	END=27463848	GT	./.
chr2	27463849	.	C	.	.	LowGQX	END=27463851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27463924	.	A	.	.	LowGQX	END=27464066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27464067	.	T	.	.	LowGQX	END=27464097	GT	./.
chr2	27464178	.	G	.	.	LowGQX	END=27464218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27464219	.	A	.	.	LowGQX	END=27464277	GT	./.
chr2	27464777	.	A	.	.	LowGQX	.	GT	./.
chr2	27464778	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27464779	.	G	.	.	LowGQX	.	GT	./.
chr2	27464780	.	G	.	.	LowGQX	END=27464783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27464784	.	G	.	.	LowGQX	END=27464785	GT	./.
chr2	27464786	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27464787	.	C	.	.	LowGQX	.	GT	./.
chr2	27464788	.	A	.	.	LowGQX	END=27464789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27464790	.	G	.	.	LowGQX	.	GT	./.
chr2	27464791	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27464792	.	C	.	.	LowGQX	.	GT	./.
chr2	27464793	.	C	.	.	LowGQX	END=27464794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27464795	.	C	.	.	LowGQX	.	GT	./.
chr2	27464796	.	C	.	.	LowGQX	END=27464803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27464804	.	A	.	.	LowGQX	.	GT	./.
chr2	27464805	.	T	.	.	LowGQX	END=27464806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27464807	.	A	.	.	LowGQX	END=27464808	GT	./.
chr2	27464809	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27464810	.	T	.	.	LowGQX	.	GT	./.
chr2	27464811	.	G	.	.	LowGQX	END=27464812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27464813	.	G	.	.	LowGQX	END=27464814	GT	./.
chr2	27464815	.	A	.	.	LowGQX	END=27464817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27464818	.	C	.	.	LowGQX	.	GT	./.
chr2	27464819	.	G	.	.	LowGQX	END=27464821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27464822	.	C	.	.	LowGQX	.	GT	./.
chr2	27464823	.	C	.	.	LowGQX	END=27464828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27464829	.	C	.	.	LowGQX	END=27464993	GT	./.
chr2	27465168	.	A	.	.	LowGQX	END=27465172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27465173	.	G	.	.	LowGQX	.	GT	./.
chr2	27465174	.	C	.	.	LowGQX	END=27465205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27465206	.	G	.	.	LowGQX	.	GT	./.
chr2	27465207	.	C	.	.	LowGQX	END=27465213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27465214	.	T	.	.	LowGQX	.	GT	./.
chr2	27465215	.	G	.	.	LowGQX	END=27465216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27465217	.	G	.	.	LowGQX	.	GT	./.
chr2	27465218	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27465219	.	T	.	.	LowGQX	.	GT	./.
chr2	27465220	.	C	.	.	LowGQX	END=27465226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27465227	.	C	.	.	LowGQX	END=27465297	GT	./.
chr2	27465486	.	A	.	.	LowGQX	END=27465662	GT	./.
chr2	27465663	.	G	.	.	LowGQX	END=27465777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27465778	.	T	.	.	LowGQX	END=27465843	GT	./.
chr2	27466064	.	A	.	.	LowGQX	END=27466163	GT	./.
chr2	27466282	.	A	.	.	LowGQX	END=27466388	GT	./.
chr2	27477943	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27477944	.	C	.	.	LowGQX	.	GT	./.
chr2	27477945	.	G	.	.	LowGQX	END=27477946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27477947	.	C	.	.	LowGQX	.	GT	./.
chr2	27477948	.	C	.	.	LowGQX	END=27477967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27477968	.	T	.	.	LowGQX	.	GT	./.
chr2	27477969	.	C	.	.	LowGQX	END=27478023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27478024	.	G	.	.	LowGQX	.	GT	./.
chr2	27478025	.	G	.	.	LowGQX	END=27478026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27478027	.	T	.	.	LowGQX	.	GT	./.
chr2	27478028	.	G	.	.	LowGQX	END=27478037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27478038	.	C	.	.	LowGQX	.	GT	./.
chr2	27478039	.	T	.	.	LowGQX	END=27478332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27479252	.	A	.	.	LowGQX	END=27479344	GT	./.
chr2	27479345	.	C	.	.	LowGQX	END=27479364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27479365	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27479366	.	G	.	.	LowGQX	END=27479383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27479384	.	G	.	.	LowGQX	.	GT	./.
chr2	27479385	.	G	.	.	LowGQX	END=27479390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27479599	.	T	.	.	LowGQX	END=27479813	GT	./.
chr2	27480010	.	C	.	.	LowGQX	END=27480335	GT	./.
chr2	27480771	.	A	.	.	LowGQX	END=27480780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27480781	.	G	.	.	LowGQX	END=27480782	GT	./.
chr2	27480783	.	C	.	.	LowGQX	END=27480790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27480791	.	G	.	.	LowGQX	.	GT	./.
chr2	27480792	.	C	.	.	LowGQX	END=27480795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27480796	.	G	.	.	LowGQX	END=27480798	GT	./.
chr2	27480799	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27480800	.	G	.	.	LowGQX	.	GT	./.
chr2	27480801	.	C	.	.	LowGQX	END=27480812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27480813	.	T	.	.	LowGQX	END=27480864	GT	./.
chr2	27480865	.	G	.	.	LowGQX	END=27480881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27480882	.	T	.	.	LowGQX	.	GT	./.
chr2	27480883	.	G	.	.	LowGQX	END=27480923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27480924	.	T	.	.	LowGQX	.	GT	./.
chr2	27480925	.	C	.	.	LowGQX	END=27480928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27481027	.	A	.	.	LowGQX	END=27481177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27481608	.	C	.	.	LowGQX	END=27481804	GT	./.
chr2	27485627	.	G	.	.	LowGQX	END=27485837	GT	./.
chr2	27486179	.	C	.	.	LowGQX	END=27486278	GT	./.
chr2	27486864	.	A	.	.	LowGQX	END=27486931	GT	./.
chr2	27486932	.	C	.	.	LowGQX	END=27486958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27486959	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27486960	.	G	.	.	LowGQX	END=27486963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27498023	.	G	.	.	LowGQX	END=27498122	GT	./.
chr2	27499595	.	T	.	.	LowGQX	END=27499711	GT	./.
chr2	27500620	.	A	.	.	LowGQX	END=27500632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27500633	.	T	.	.	LowGQX	.	GT	./.
chr2	27500634	.	G	.	.	LowGQX	END=27500723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27500724	.	A	.	.	LowGQX	.	GT	./.
chr2	27500725	.	G	.	.	LowGQX	END=27500733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27500734	.	A	.	.	LowGQX	.	GT	./.
chr2	27500735	.	A	.	.	LowGQX	END=27500774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27500775	.	G	.	.	LowGQX	.	GT	./.
chr2	27500776	.	A	.	.	LowGQX	END=27500831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27500832	.	T	.	.	LowGQX	.	GT	./.
chr2	27500833	.	G	.	.	LowGQX	END=27500885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27501054	.	A	.	.	LowGQX	END=27501068	GT	./.
chr2	27501069	.	T	.	.	LowGQX	END=27501202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27503012	.	C	.	.	LowGQX	END=27503111	GT	./.
chr2	27505598	.	G	.	.	LowGQX	END=27505769	GT	./.
chr2	27521433	.	A	.	.	LowGQX	END=27521440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27521441	.	A	.	.	LowGQX	.	GT	./.
chr2	27521442	.	A	.	.	LowGQX	END=27521447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27521448	.	T	.	.	LowGQX	.	GT	./.
chr2	27521449	.	A	.	.	LowGQX	END=27521500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27521501	.	C	.	.	LowGQX	.	GT	./.
chr2	27521502	.	C	.	.	LowGQX	END=27521515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27521516	.	G	.	.	LowGQX	.	GT	./.
chr2	27521517	.	A	.	.	LowGQX	END=27521545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27521546	.	G	.	.	LowGQX	END=27521609	GT	./.
chr2	27522111	.	A	.	.	LowGQX	END=27522286	GT	./.
chr2	27522347	.	C	.	.	LowGQX	END=27522523	GT	./.
chr2	27527825	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27527826	.	G	.	.	LowGQX	.	GT	./.
chr2	27527827	.	A	.	.	LowGQX	END=27527837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27527838	.	C	.	.	LowGQX	.	GT	./.
chr2	27527839	.	G	.	.	LowGQX	END=27527847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27527848	.	G	.	.	LowGQX	.	GT	./.
chr2	27527849	.	C	.	.	LowGQX	END=27527850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27527851	.	A	.	.	LowGQX	.	GT	./.
chr2	27527852	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27527853	.	G	.	.	LowGQX	END=27527854	GT	./.
chr2	27527855	.	T	.	.	LowGQX	END=27527868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27527869	.	G	.	.	LowGQX	.	GT	./.
chr2	27527870	.	A	.	.	LowGQX	END=27527879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27527880	.	A	.	.	LowGQX	.	GT	./.
chr2	27527881	.	G	.	.	LowGQX	END=27527883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27527884	.	G	.	.	LowGQX	.	GT	./.
chr2	27527885	.	T	.	.	LowGQX	END=27527888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27527889	.	C	.	.	LowGQX	.	GT	./.
chr2	27527890	.	A	.	.	LowGQX	END=27527901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27527902	.	G	.	.	LowGQX	.	GT	./.
chr2	27527903	.	A	.	.	LowGQX	END=27527904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27527905	.	G	.	.	LowGQX	.	GT	./.
chr2	27527906	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27527907	.	G	.	.	LowGQX	.	GT	./.
chr2	27527908	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27527909	.	G	.	.	LowGQX	.	GT	./.
chr2	27527910	.	C	.	.	LowGQX	END=27527924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27528450	.	A	.	.	LowGQX	END=27528657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27528658	.	A	.	.	LowGQX	END=27528687	GT	./.
chr2	27528910	.	C	.	.	LowGQX	END=27529009	GT	./.
chr2	27529079	.	A	.	.	LowGQX	.	GT	./.
chr2	27529080	.	G	.	.	LowGQX	END=27529096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529097	.	A	.	.	LowGQX	.	GT	./.
chr2	27529098	.	A	.	.	LowGQX	END=27529103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529104	.	A	.	.	LowGQX	.	GT	./.
chr2	27529105	.	G	.	.	LowGQX	END=27529107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529108	.	G	.	.	LowGQX	.	GT	./.
chr2	27529109	.	G	.	.	LowGQX	END=27529111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529112	.	G	.	.	LowGQX	.	GT	./.
chr2	27529113	.	G	.	.	LowGQX	END=27529129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529130	.	T	.	.	LowGQX	.	GT	./.
chr2	27529131	.	A	.	.	LowGQX	END=27529132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529133	.	G	.	.	LowGQX	.	GT	./.
chr2	27529134	.	A	.	.	LowGQX	END=27529142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529143	.	A	.	.	LowGQX	.	GT	./.
chr2	27529144	.	G	.	.	LowGQX	END=27529146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529147	.	A	.	.	LowGQX	END=27529148	GT	./.
chr2	27529149	.	T	.	.	LowGQX	END=27529154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529155	.	T	.	.	LowGQX	.	GT	./.
chr2	27529156	.	A	.	.	LowGQX	END=27529159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529160	.	G	.	.	LowGQX	.	GT	./.
chr2	27529161	.	T	.	.	LowGQX	END=27529162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529163	.	G	.	.	LowGQX	.	GT	./.
chr2	27529164	.	A	.	.	LowGQX	END=27529166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529167	.	A	.	.	LowGQX	.	GT	./.
chr2	27529168	.	C	.	.	LowGQX	END=27529172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529173	.	C	.	.	LowGQX	END=27529174	GT	./.
chr2	27529175	.	G	.	.	LowGQX	END=27529178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529179	.	T	.	.	LowGQX	END=27529207	GT	./.
chr2	27529261	.	T	.	.	LowGQX	END=27529289	GT	./.
chr2	27529290	.	G	.	.	LowGQX	END=27529291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529292	.	A	.	.	LowGQX	.	GT	./.
chr2	27529293	.	C	.	.	LowGQX	END=27529300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529301	.	C	.	.	LowGQX	.	GT	./.
chr2	27529302	.	A	.	.	LowGQX	END=27529304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529305	.	A	.	.	LowGQX	.	GT	./.
chr2	27529306	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529307	.	G	.	.	LowGQX	.	GT	./.
chr2	27529308	.	C	.	.	LowGQX	END=27529313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529314	.	T	.	.	LowGQX	.	GT	./.
chr2	27529315	.	T	.	.	LowGQX	END=27529320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529321	.	C	.	.	LowGQX	.	GT	./.
chr2	27529322	.	A	.	.	LowGQX	END=27529344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529345	.	A	.	.	LowGQX	.	GT	./.
chr2	27529346	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529347	.	G	.	.	LowGQX	.	GT	./.
chr2	27529348	.	T	.	.	LowGQX	END=27529352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529353	.	C	.	.	LowGQX	END=27529354	GT	./.
chr2	27529355	.	A	.	.	LowGQX	END=27529366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529367	.	G	.	.	LowGQX	.	GT	./.
chr2	27529368	.	G	.	.	LowGQX	END=27529369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529370	.	C	.	.	LowGQX	.	GT	./.
chr2	27529371	.	A	.	.	LowGQX	END=27529375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529376	.	G	.	.	LowGQX	.	GT	./.
chr2	27529377	.	G	.	.	LowGQX	END=27529383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529384	.	A	.	.	LowGQX	.	GT	./.
chr2	27529385	.	G	.	.	LowGQX	END=27529388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27529389	.	G	.	.	LowGQX	.	GT	./.
chr2	27529390	.	A	.	.	LowGQX	END=27529391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27529392	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27529393	.	G	.	.	LowGQX	END=27529398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27529399	.	A	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	27529400	.	T	.	.	LowGQX	END=27529401	GT	./.
chr2	27529402	.	G	.	.	LowGQX	END=27529407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27529408	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27529409	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27529410	.	G	.	.	LowGQX	END=27529411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27529412	.	T	.	.	LowGQX	.	GT	./.
chr2	27529413	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr2	27529414	.	A	.	.	LowGQX	.	GT	./.
chr2	27529415	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr2	27529416	.	A	.	.	LowGQX	.	GT	./.
chr2	27530375	.	C	.	.	LowGQX	END=27530413	GT	./.
chr2	27530414	.	A	.	.	LowGQX	END=27530420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27530421	.	T	.	.	LowGQX	.	GT	./.
chr2	27530422	.	C	.	.	LowGQX	END=27530441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27530442	.	G	.	.	LowGQX	.	GT	./.
chr2	27530443	.	G	.	.	LowGQX	END=27530508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27530509	.	A	.	.	LowGQX	.	GT	./.
chr2	27530510	.	G	.	.	LowGQX	END=27530561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27530562	.	G	.	.	LowGQX	.	GT	./.
chr2	27530563	.	C	.	.	LowGQX	END=27530567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27530568	.	C	.	.	LowGQX	.	GT	./.
chr2	27530569	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27530570	.	C	.	.	LowGQX	.	GT	./.
chr2	27530571	.	G	.	.	LowGQX	END=27530575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27530576	.	G	.	.	LowGQX	.	GT	./.
chr2	27530577	.	G	.	.	LowGQX	END=27530585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27530586	.	C	.	.	LowGQX	.	GT	./.
chr2	27530587	.	C	.	.	LowGQX	END=27530596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27530597	.	A	.	.	LowGQX	.	GT	./.
chr2	27530598	.	A	.	.	LowGQX	END=27530606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27530607	.	C	.	.	LowGQX	.	GT	./.
chr2	27530608	.	G	.	.	LowGQX	END=27530610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27530611	.	G	.	.	LowGQX	END=27530766	GT	./.
chr2	27532712	.	G	.	.	PASS	END=27532726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	27532727	.	T	.	.	PASS	END=27532777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	27532778	.	G	.	.	PASS	END=27532858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	27532859	.	A	.	.	PASS	END=27532894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	27532895	.	T	.	.	PASS	END=27532900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	27534468	.	C	.	.	LowGQX	END=27534475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27534476	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27534477	.	C	.	.	LowGQX	END=27534492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27534493	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27534494	.	A	.	.	LowGQX	.	GT	./.
chr2	27534495	.	A	.	.	LowGQX	END=27534508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27534509	.	T	.	.	LowGQX	.	GT	./.
chr2	27534510	.	G	.	.	LowGQX	END=27534513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27534514	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27534515	.	G	.	.	LowGQX	END=27534518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27534519	.	A	C	7.08	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=3.54;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,1:2:3.01:36,3,0:60:3:0.500
chr2	27534520	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr2	27534521	.	A	.	.	LowGQX	.	GT	./.
chr2	27534522	.	A	.	.	LowGQX	END=27534531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27534532	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27534533	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27534534	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27534535	.	C	.	.	LowGQX	.	GT	./.
chr2	27534536	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27534537	.	G	.	.	LowGQX	END=27534538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	27534539	.	A	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr2	27534540	.	T	.	.	LowGQX	END=27534543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr2	27534544	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr2	27534545	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr2	27534546	.	C	.	.	LowGQX	END=27534547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr2	27534548	.	A	.	.	LowGQX	END=27534551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	27534552	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr2	27534553	.	G	.	.	LowGQX	END=27534554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr2	27534555	.	T	.	.	LowGQX	END=27534557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	27534558	.	A	.	.	LowGQX	END=27534562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	27534563	.	G	.	.	LowGQX	END=27534566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	27534567	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr2	27534716	.	C	.	.	PASS	END=27534724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr2	27534725	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:59:60
chr2	27534726	.	C	.	.	PASS	END=27534738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:87:60
chr2	27534739	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:72:60
chr2	27534740	.	G	.	.	PASS	END=27534761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	27534762	.	C	.	.	PASS	END=27534802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	27534803	.	T	.	.	PASS	END=27534861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	27534862	.	T	.	.	PASS	END=27534870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	27535031	.	T	.	.	PASS	END=27535074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	27535075	.	C	.	.	PASS	END=27535165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	27535248	.	T	.	.	PASS	END=27535283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	27535284	.	A	.	.	PASS	END=27535311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	27535311	.	T	TG	3952.18	PASS	DP=100;FS=0.000;HRun=2;HaplotypeScore=227.6701;MQ=60;MQ0=0;QD=39.52;SB=-1380.88	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:3,97:100:99:3952,295,0:60:99:0.970
chr2	27535312	.	G	.	.	PASS	END=27535380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	27535381	.	T	.	.	PASS	END=27535470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	27535471	.	T	.	.	PASS	END=27535612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr2	27535613	.	C	.	.	PASS	END=27535653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	27535654	.	C	.	.	PASS	END=27535678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	27535679	.	G	.	.	PASS	END=27535690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	27535810	.	A	.	.	PASS	END=27535827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	27535828	.	G	.	.	PASS	END=27535840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	27535841	.	C	.	.	PASS	END=27535876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	27535877	.	A	.	.	PASS	END=27535975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	27535976	.	C	.	.	PASS	END=27535986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	27535987	.	T	.	.	PASS	END=27535992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	27535993	.	G	.	.	PASS	END=27535994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr2	27535995	.	T	.	.	PASS	END=27536017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:63:60
chr2	27536018	.	T	.	.	PASS	END=27536038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr2	27536039	.	G	.	.	PASS	END=27536048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr2	27538947	.	A	.	.	LowGQX	END=27539053	GT	./.
chr2	27539944	.	C	.	.	LowGQX	END=27540101	GT	./.
chr2	27545260	.	C	.	.	PASS	END=27545288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	27545289	.	C	.	.	PASS	END=27545405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr2	27545406	.	A	.	.	PASS	END=27545435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	27547259	.	T	.	.	LowGQX	END=27547358	GT	./.
chr2	27549023	.	T	.	.	LowGQX	END=27549122	GT	./.
chr2	27549516	.	C	.	.	LowGQX	END=27549606	GT	./.
chr2	27549607	.	G	.	.	LowGQX	END=27549654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27549655	.	G	.	.	LowGQX	END=27549762	GT	./.
chr2	27550042	.	A	.	.	LowGQX	END=27550153	GT	./.
chr2	27550872	.	A	.	.	LowGQX	END=27551001	GT	./.
chr2	27551002	.	G	.	.	LowGQX	END=27551058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27551272	.	C	.	.	LowGQX	END=27551398	GT	./.
chr2	27551399	.	G	.	.	LowGQX	END=27551465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27551705	.	G	.	.	LowGQX	END=27551735	GT	./.
chr2	27551736	.	G	.	.	LowGQX	END=27551767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27551768	.	G	.	.	LowGQX	.	GT	./.
chr2	27551769	.	T	.	.	LowGQX	END=27551804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27551986	.	A	.	.	LowGQX	END=27552151	GT	./.
chr2	27552244	.	A	.	.	LowGQX	END=27552336	GT	./.
chr2	27552337	.	G	.	.	LowGQX	END=27552392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27556469	.	T	.	.	LowGQX	END=27556653	GT	./.
chr2	27556804	.	A	.	.	LowGQX	END=27556903	GT	./.
chr2	27558135	.	G	.	.	LowGQX	END=27558172	GT	./.
chr2	27558173	.	G	.	.	LowGQX	END=27558192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27558193	.	C	.	.	LowGQX	.	GT	./.
chr2	27558194	.	C	.	.	LowGQX	END=27558229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27558230	.	G	.	.	LowGQX	.	GT	./.
chr2	27558231	.	A	.	.	LowGQX	END=27558254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27558255	.	A	.	.	LowGQX	.	GT	./.
chr2	27558256	.	G	.	.	LowGQX	END=27558274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27558275	.	A	.	.	LowGQX	.	GT	./.
chr2	27558276	.	C	.	.	LowGQX	END=27558291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27558292	.	A	.	.	LowGQX	.	GT	./.
chr2	27558293	.	A	.	.	LowGQX	END=27558295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27558463	.	A	.	.	LowGQX	END=27558575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27558782	.	A	.	.	LowGQX	END=27558897	GT	./.
chr2	27559063	.	A	.	.	LowGQX	END=27559294	GT	./.
chr2	27560109	.	A	.	.	LowGQX	END=27560190	GT	./.
chr2	27560191	.	C	.	.	LowGQX	END=27560192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27560193	.	G	.	.	LowGQX	.	GT	./.
chr2	27560194	.	G	.	.	LowGQX	END=27560197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27560198	.	G	.	.	LowGQX	.	GT	./.
chr2	27560199	.	G	.	.	LowGQX	END=27560201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27560202	.	C	.	.	LowGQX	.	GT	./.
chr2	27560203	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27560204	.	G	.	.	LowGQX	.	GT	./.
chr2	27560205	.	C	.	.	LowGQX	END=27560208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27560209	.	A	.	.	LowGQX	.	GT	./.
chr2	27560210	.	C	.	.	LowGQX	END=27560211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27560337	.	C	.	.	LowGQX	END=27560396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27560397	.	A	.	.	LowGQX	.	GT	./.
chr2	27560398	.	C	.	.	LowGQX	END=27560403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27560404	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27560405	.	T	.	.	LowGQX	END=27560409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	27560410	.	A	.	.	LowGQX	.	GT	./.
chr2	27560411	.	T	.	.	LowGQX	END=27560412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27560413	.	T	.	.	LowGQX	.	GT	./.
chr2	27560414	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27560415	.	T	.	.	LowGQX	END=27560416	GT	./.
chr2	27560417	.	T	.	.	LowGQX	END=27560419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27560420	.	T	.	.	LowGQX	.	GT	./.
chr2	27560421	.	C	.	.	LowGQX	END=27560425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27560426	.	C	.	.	LowGQX	.	GT	./.
chr2	27560427	.	T	.	.	LowGQX	END=27560435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27560436	.	A	.	.	LowGQX	.	GT	./.
chr2	27560791	.	A	.	.	LowGQX	END=27560825	GT	./.
chr2	27560826	.	G	.	.	LowGQX	END=27560852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27560853	.	T	.	.	LowGQX	END=27560855	GT	./.
chr2	27560856	.	G	.	.	LowGQX	END=27560862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27560863	.	T	.	.	LowGQX	.	GT	./.
chr2	27560864	.	T	.	.	LowGQX	END=27560867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27560868	.	C	.	.	LowGQX	.	GT	./.
chr2	27560869	.	G	.	.	LowGQX	END=27560874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27560875	.	G	.	.	LowGQX	.	GT	./.
chr2	27560876	.	T	.	.	LowGQX	END=27560879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27560880	.	T	.	.	LowGQX	.	GT	./.
chr2	27560881	.	T	.	.	LowGQX	END=27560884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27560885	.	T	.	.	LowGQX	.	GT	./.
chr2	27560886	.	T	.	.	LowGQX	END=27560888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27560889	.	T	.	.	LowGQX	.	GT	./.
chr2	27560890	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27564813	.	A	.	.	LowGQX	END=27564849	GT	./.
chr2	27564850	.	C	.	.	LowGQX	END=27564948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27564949	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	27564950	.	A	.	.	LowGQX	END=27565016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27565017	.	A	.	.	LowGQX	END=27565102	GT	./.
chr2	27565691	.	A	.	.	LowGQX	END=27565697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27565698	.	G	.	.	LowGQX	.	GT	./.
chr2	27565699	.	G	.	.	LowGQX	END=27565710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27565711	.	C	.	.	LowGQX	.	GT	./.
chr2	27565712	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27565713	.	G	.	.	LowGQX	END=27565905	GT	./.
chr2	27565906	.	G	.	.	LowGQX	END=27566005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27566006	.	A	.	.	LowGQX	.	GT	./.
chr2	27566007	.	A	.	.	LowGQX	END=27566009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27566010	.	A	.	.	LowGQX	.	GT	./.
chr2	27566011	.	A	.	.	LowGQX	END=27566016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27566173	.	A	.	.	LowGQX	END=27566291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27566292	.	T	.	.	LowGQX	END=27566445	GT	./.
chr2	27578909	.	A	.	.	LowGQX	END=27578913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27578914	.	A	.	.	LowGQX	.	GT	./.
chr2	27578915	.	A	.	.	LowGQX	END=27578939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27578940	.	A	.	.	LowGQX	.	GT	./.
chr2	27578941	.	G	.	.	LowGQX	END=27578943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27578944	.	T	.	.	LowGQX	.	GT	./.
chr2	27578945	.	T	.	.	LowGQX	END=27578949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27578950	.	A	.	.	LowGQX	.	GT	./.
chr2	27578951	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27578952	.	A	.	.	LowGQX	END=27578953	GT	./.
chr2	27578954	.	C	.	.	LowGQX	END=27578958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27578959	.	A	.	.	LowGQX	.	GT	./.
chr2	27578960	.	C	.	.	LowGQX	END=27578968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27578969	.	A	.	.	LowGQX	END=27578970	GT	./.
chr2	27578971	.	C	.	.	LowGQX	END=27578977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27578978	.	A	.	.	LowGQX	.	GT	./.
chr2	27578979	.	G	.	.	LowGQX	END=27578997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27578998	.	A	.	.	LowGQX	.	GT	./.
chr2	27578999	.	A	.	.	LowGQX	END=27579002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27579003	.	G	.	.	LowGQX	.	GT	./.
chr2	27579004	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27579005	.	C	.	.	LowGQX	END=27579008	GT	./.
chr2	27587216	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	27587217	.	A	.	.	PASS	END=27587223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	27587224	.	G	.	.	PASS	END=27587225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr2	27587226	.	G	.	.	PASS	END=27587233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	27587234	.	A	.	.	PASS	END=27587244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr2	27587245	.	T	.	.	PASS	END=27587266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr2	27587267	.	T	.	.	PASS	END=27587289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr2	27587290	.	G	.	.	PASS	END=27587311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	27587312	.	G	.	.	PASS	END=27587329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	27587330	.	C	.	.	PASS	END=27587369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	27587370	.	T	.	.	PASS	END=27587410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	27587411	.	C	.	.	PASS	END=27587517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	27587534	.	T	.	.	PASS	END=27587604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	27587605	.	G	.	.	PASS	END=27587665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	27587666	.	T	.	.	PASS	END=27587693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	27587694	.	T	.	.	PASS	END=27587706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	27587707	.	C	.	.	PASS	END=27587743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	27587744	.	C	.	.	PASS	END=27587756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr2	27587757	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:42:60
chr2	27587758	.	T	.	.	PASS	END=27587764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr2	27587765	.	C	.	.	PASS	END=27587781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	27587782	.	G	.	.	PASS	END=27587816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr2	27589575	.	C	.	.	PASS	END=27589606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	27589607	.	C	.	.	PASS	END=27589661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	27589662	.	G	.	.	PASS	END=27589724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	27589725	.	C	.	.	PASS	END=27589772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	27589773	.	C	.	.	PASS	END=27589809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	27589810	.	T	C	868.15	PASS	BaseQRankSum=-0.487;DP=59;Dels=0.00;FS=1.078;HRun=0;HaplotypeScore=0.9997;MQ=60;MQ0=0;MQRankSum=-0.691;QD=14.71;ReadPosRankSum=-2.371;SB=-447.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:25,33:59:99:898,0,731:60:99:0.569
chr2	27589811	.	G	.	.	PASS	END=27589854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	27589890	.	T	.	.	PASS	END=27589926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	27589927	.	G	.	.	PASS	END=27589974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	27589975	.	T	.	.	PASS	END=27590019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	27590020	.	T	.	.	PASS	END=27590074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	27590075	.	G	.	.	PASS	END=27590093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	27590094	.	A	.	.	PASS	END=27590127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	27590128	.	A	.	.	PASS	END=27590143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	27590144	.	T	.	.	PASS	END=27590165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	27590273	.	T	.	.	PASS	END=27590357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	27590358	.	A	.	.	PASS	END=27590398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	27590399	.	T	.	.	PASS	END=27590435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	27590436	.	A	.	.	PASS	END=27590477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	27590562	.	A	.	.	PASS	END=27590601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	27590602	.	G	.	.	PASS	END=27590635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	27590636	.	C	.	.	PASS	END=27590659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	27590660	.	A	.	.	PASS	END=27590732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	27590733	.	G	.	.	PASS	END=27590740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	27590841	.	G	.	.	PASS	END=27590861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	27590862	.	G	.	.	PASS	END=27590966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	27590967	.	G	.	.	PASS	END=27591019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	27591020	.	G	.	.	PASS	END=27591055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	27591056	.	C	.	.	PASS	END=27591057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	27591188	.	T	.	.	PASS	END=27591285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	27591286	.	A	.	.	PASS	END=27591340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	27591341	.	C	.	.	PASS	END=27591381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	27591452	.	C	.	.	PASS	END=27591488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	27591489	.	C	.	.	PASS	END=27591523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	27591524	.	T	.	.	PASS	END=27591638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	27591639	.	C	.	.	PASS	END=27591651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	27591822	.	G	.	.	PASS	END=27591838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	27591839	.	G	.	.	PASS	END=27591879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	27591880	.	G	.	.	PASS	END=27591903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr2	27591904	.	G	.	.	PASS	END=27592034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr2	27592035	.	T	.	.	PASS	END=27592054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr2	27592055	.	T	.	.	PASS	END=27592087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	27592088	.	A	.	.	PASS	END=27592127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	27592128	.	C	.	.	PASS	END=27592130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	27592230	.	T	.	.	PASS	END=27592262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	27592263	.	A	.	.	PASS	END=27592279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	27592280	.	C	.	.	PASS	END=27592312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	27592313	.	G	.	.	PASS	END=27592422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	27592423	.	C	T	1730.67	PASS	BaseQRankSum=2.968;DP=131;Dels=0.00;FS=2.401;HRun=0;HaplotypeScore=19.0429;MQ=60;MQ0=0;MQRankSum=-0.320;QD=13.21;ReadPosRankSum=-0.516;SB=-755.16	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:60,70:131:99:1761,0,1448:60:99:0.538
chr2	27592424	.	A	.	.	PASS	END=27592441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	27592442	.	T	.	.	PASS	END=27592467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	27592692	.	A	.	.	PASS	END=27592735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr2	27592736	.	C	.	.	PASS	END=27592832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	27592833	.	G	.	.	PASS	END=27592854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	27592855	.	G	.	.	PASS	END=27592880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	27593099	.	C	.	.	PASS	END=27593172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:87:60
chr2	27593173	.	A	.	.	PASS	END=27593198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	27593199	.	T	.	.	PASS	END=27593209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr2	27593210	.	T	.	.	PASS	END=27593211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:51:60
chr2	27593212	.	G	.	.	PASS	END=27593213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:57:60
chr2	27593214	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:30:60
chr2	27593215	.	A	.	.	PASS	END=27593230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr2	27593231	.	G	.	.	PASS	END=27593232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr2	27593458	.	G	.	.	LowGQX	END=27593489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27593490	.	T	.	.	LowGQX	.	GT	./.
chr2	27593491	.	C	.	.	LowGQX	END=27593498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27593499	.	T	.	.	LowGQX	.	GT	./.
chr2	27593500	.	C	.	.	LowGQX	END=27593507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27593508	.	G	.	.	LowGQX	.	GT	./.
chr2	27593509	.	G	.	.	LowGQX	END=27593513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27593514	.	T	.	.	LowGQX	.	GT	./.
chr2	27593515	.	G	.	.	LowGQX	END=27593548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27593549	.	A	.	.	LowGQX	END=27593557	GT	./.
chr2	27593593	.	T	.	.	LowGQX	END=27593598	GT	./.
chr2	27593599	.	G	.	.	LowGQX	END=27593651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27593652	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	27593653	.	A	.	.	LowGQX	END=27593692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27594073	.	G	.	.	LowGQX	END=27594232	GT	./.
chr2	27595488	.	A	.	.	LowGQX	END=27595609	GT	./.
chr2	27595860	.	A	.	.	LowGQX	END=27595959	GT	./.
chr2	27596097	.	T	.	.	LowGQX	END=27596196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27596726	.	A	.	.	LowGQX	END=27596840	GT	./.
chr2	27596948	.	C	.	.	LowGQX	END=27597047	GT	./.
chr2	27597207	.	C	.	.	LowGQX	END=27597306	GT	./.
chr2	27597541	.	C	.	.	LowGQX	END=27597640	GT	./.
chr2	27597925	.	T	.	.	LowGQX	END=27598024	GT	./.
chr2	27598371	.	A	.	.	LowGQX	END=27598578	GT	./.
chr2	27598711	.	A	.	.	LowGQX	END=27598840	GT	./.
chr2	27598962	.	C	.	.	LowGQX	END=27599061	GT	./.
chr2	27599168	.	G	.	.	LowGQX	END=27599250	GT	./.
chr2	27599251	.	G	.	.	LowGQX	END=27599267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27599317	.	T	.	.	LowGQX	END=27599416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27599471	.	A	.	.	LowGQX	END=27599494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27599495	.	T	.	.	LowGQX	.	GT	./.
chr2	27599496	.	G	.	.	LowGQX	END=27599588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27600251	.	A	.	.	PASS	END=27600258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr2	27600259	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:2:60
chr2	27600260	.	A	.	.	PASS	END=27600267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	27600268	.	C	.	.	PASS	END=27600276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	27600277	.	A	.	.	PASS	END=27600281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr2	27600282	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:6:60
chr2	27600283	.	C	.	.	PASS	END=27600290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr2	27600291	.	C	.	.	PASS	END=27600293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr2	27600294	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:45:60
chr2	27600295	.	G	.	.	PASS	END=27600303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	27600304	.	C	.	.	PASS	END=27600305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr2	27600306	.	G	.	.	PASS	END=27600310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:69:60
chr2	27600311	.	T	.	.	PASS	END=27600317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	27600318	.	G	.	.	PASS	END=27600321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr2	27600322	.	A	.	.	PASS	END=27600368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	27600369	.	C	.	.	PASS	END=27600409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	27600410	.	G	.	.	PASS	END=27600424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	27600425	.	G	.	.	PASS	END=27600455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	27600456	.	G	.	.	PASS	END=27600487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	27600488	.	G	.	.	PASS	END=27600505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr2	27600506	.	G	.	.	PASS	END=27600546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:288:99:60
chr2	27600547	.	A	.	.	PASS	END=27600598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:386:99:60
chr2	27600599	.	G	.	.	PASS	END=27600733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:427:99:60
chr2	27600734	.	C	.	.	PASS	END=27600774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:331:99:60
chr2	27600775	.	G	.	.	PASS	END=27600790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr2	27600791	.	T	.	.	PASS	END=27600811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr2	27600812	.	A	.	.	PASS	END=27600841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	27600842	.	T	.	.	PASS	END=27600902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:59
chr2	27600903	.	T	.	.	PASS	END=27601023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	27601024	.	G	.	.	PASS	END=27601121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	27601122	.	G	.	.	PASS	END=27601195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	27601196	.	C	.	.	PASS	END=27601702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr2	27601703	.	G	.	.	PASS	END=27601715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr2	27601716	.	A	.	.	PASS	END=27601740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	27601741	.	G	.	.	PASS	END=27601810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	27601811	.	G	.	.	PASS	END=27601893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	27601894	.	A	.	.	PASS	END=27601917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	27601918	.	T	.	.	PASS	END=27601955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	27601956	.	A	.	.	PASS	END=27601965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:95:60
chr2	27601966	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:90:60
chr2	27601967	.	A	.	.	PASS	END=27601968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr2	27601969	.	G	.	.	PASS	END=27601972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr2	27602909	.	G	.	.	PASS	END=27602910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr2	27602911	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:45:60
chr2	27602912	.	T	.	.	PASS	END=27602923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr2	27602924	.	C	.	.	PASS	END=27602954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:60
chr2	27602955	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:69:60
chr2	27602956	.	C	.	.	PASS	END=27602976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:78:60
chr2	27602977	.	A	.	.	PASS	END=27603016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	27603017	.	C	.	.	PASS	END=27603078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	27603079	.	G	.	.	PASS	END=27603116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:93:60
chr2	27603117	.	T	.	.	PASS	END=27603129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr2	27603130	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:66:60
chr2	27603131	.	G	.	.	PASS	END=27603133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr2	27603134	.	T	.	.	PASS	END=27603138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:63:60
chr2	27603139	.	G	.	.	PASS	END=27603145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr2	27603146	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:35:27:60
chr2	27603147	.	C	.	.	PASS	END=27603166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr2	27603288	.	T	.	.	PASS	END=27603294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	27603295	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:21:60
chr2	27603296	.	C	.	.	PASS	END=27603299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	27603300	.	A	.	57.08	LowGQX	DP=18;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:14:18:27.08:60:27
chr2	27603301	.	C	.	.	PASS	END=27603305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr2	27603306	.	G	.	.	PASS	END=27603312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr2	27603313	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:48:60
chr2	27603314	.	C	.	.	PASS	END=27603323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	27603324	.	C	.	.	PASS	END=27603330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr2	27603331	.	C	.	.	PASS	END=27603358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr2	27603359	.	A	.	.	PASS	END=27603361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:72:60
chr2	27603362	.	G	.	.	PASS	END=27603433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:78:60
chr2	27603434	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:63:60
chr2	27603435	.	C	.	.	PASS	END=27603444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr2	27604464	.	T	.	.	LowGQX	END=27604674	GT	./.
chr2	27604991	.	A	.	.	LowGQX	END=27605097	GT	./.
chr2	27605341	.	A	.	.	LowGQX	END=27605434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27605435	.	A	.	.	LowGQX	END=27605474	GT	./.
chr2	27606231	.	A	.	.	LowGQX	END=27606232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606233	.	C	.	.	LowGQX	END=27606234	GT	./.
chr2	27606235	.	A	.	.	LowGQX	END=27606236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606237	.	G	.	.	LowGQX	.	GT	./.
chr2	27606238	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606239	.	C	.	.	LowGQX	END=27606243	GT	./.
chr2	27606244	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606245	.	A	.	.	LowGQX	.	GT	./.
chr2	27606246	.	G	.	.	LowGQX	END=27606247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606248	.	G	.	.	LowGQX	.	GT	./.
chr2	27606249	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606250	.	T	.	.	LowGQX	.	GT	./.
chr2	27606251	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606252	.	G	.	.	LowGQX	END=27606346	GT	./.
chr2	27606347	.	A	.	.	LowGQX	END=27606352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606353	.	C	.	.	LowGQX	.	GT	./.
chr2	27606354	.	T	.	.	LowGQX	END=27606366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606367	.	G	.	.	LowGQX	END=27606368	GT	./.
chr2	27606369	.	C	.	.	LowGQX	END=27606372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606373	.	G	.	.	LowGQX	.	GT	./.
chr2	27606374	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606375	.	T	.	.	LowGQX	END=27606377	GT	./.
chr2	27606378	.	C	.	.	LowGQX	END=27606379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606380	.	C	.	.	LowGQX	.	GT	./.
chr2	27606381	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606382	.	C	.	.	LowGQX	END=27606383	GT	./.
chr2	27606384	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606385	.	C	.	.	LowGQX	.	GT	./.
chr2	27606386	.	G	.	.	LowGQX	END=27606387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606388	.	G	.	.	LowGQX	.	GT	./.
chr2	27606389	.	A	.	.	LowGQX	END=27606390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606391	.	T	.	.	LowGQX	.	GT	./.
chr2	27606392	.	C	.	.	LowGQX	END=27606393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606394	.	C	.	.	LowGQX	.	GT	./.
chr2	27606395	.	C	.	.	LowGQX	END=27606397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606398	.	C	.	.	LowGQX	.	GT	./.
chr2	27606399	.	G	.	.	LowGQX	END=27606402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606403	.	G	.	.	LowGQX	.	GT	./.
chr2	27606404	.	C	.	.	LowGQX	END=27606408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606409	.	A	.	.	LowGQX	.	GT	./.
chr2	27606410	.	T	.	.	LowGQX	END=27606420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606421	.	C	.	.	LowGQX	.	GT	./.
chr2	27606422	.	C	.	.	LowGQX	END=27606428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606429	.	C	.	.	LowGQX	.	GT	./.
chr2	27606430	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606431	.	G	.	.	LowGQX	.	GT	./.
chr2	27606432	.	G	.	.	LowGQX	END=27606434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606435	.	C	.	.	LowGQX	.	GT	./.
chr2	27606436	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606437	.	C	.	.	LowGQX	.	GT	./.
chr2	27606438	.	C	.	.	LowGQX	END=27606439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606440	.	C	.	.	LowGQX	.	GT	./.
chr2	27606441	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606442	.	G	.	.	LowGQX	END=27606443	GT	./.
chr2	27606444	.	T	.	.	LowGQX	END=27606453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606454	.	C	.	.	LowGQX	.	GT	./.
chr2	27606455	.	T	.	.	LowGQX	END=27606462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606463	.	C	.	.	LowGQX	END=27606464	GT	./.
chr2	27606465	.	A	.	.	LowGQX	END=27606467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606468	.	C	.	.	LowGQX	.	GT	./.
chr2	27606469	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27606817	.	A	.	.	LowGQX	END=27606961	GT	./.
chr2	27607538	.	A	.	.	LowGQX	END=27607724	GT	./.
chr2	27607725	.	A	.	.	LowGQX	END=27607732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27607733	.	T	.	.	LowGQX	.	GT	./.
chr2	27607734	.	A	.	.	LowGQX	END=27607744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27607745	.	G	.	.	LowGQX	.	GT	./.
chr2	27607746	.	T	.	.	LowGQX	END=27607770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27607771	.	T	.	.	LowGQX	.	GT	./.
chr2	27607772	.	T	.	.	LowGQX	END=27607806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27607807	.	G	.	.	LowGQX	.	GT	./.
chr2	27607808	.	A	.	.	LowGQX	END=27607818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27607819	.	C	.	.	LowGQX	END=27607820	GT	./.
chr2	27607821	.	C	.	.	LowGQX	END=27607822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27607823	.	G	.	.	LowGQX	.	GT	./.
chr2	27607824	.	G	.	.	LowGQX	END=27607827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27607828	.	C	.	.	LowGQX	.	GT	./.
chr2	27607829	.	T	.	.	LowGQX	END=27607836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27607837	.	C	.	.	LowGQX	.	GT	./.
chr2	27607838	.	C	.	.	LowGQX	END=27607974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27608612	.	A	.	.	LowGQX	END=27608748	GT	./.
chr2	27609054	.	G	.	.	LowGQX	END=27609153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27609941	.	A	.	.	LowGQX	END=27610040	GT	./.
chr2	27632118	.	C	.	.	LowGQX	END=27632291	GT	./.
chr2	27656139	.	G	.	.	LowGQX	END=27656193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27656194	.	A	.	.	LowGQX	END=27656352	GT	./.
chr2	27656538	.	A	.	.	LowGQX	END=27656607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27656608	.	G	.	.	LowGQX	.	GT	./.
chr2	27656609	.	G	.	.	LowGQX	END=27656627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27656628	.	A	.	.	LowGQX	.	GT	./.
chr2	27656629	.	G	.	.	LowGQX	END=27656645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27656646	.	A	.	.	LowGQX	.	GT	./.
chr2	27656647	.	C	.	.	LowGQX	END=27656654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27656655	.	T	.	.	LowGQX	.	GT	./.
chr2	27656656	.	G	.	.	LowGQX	END=27656663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27656664	.	T	.	.	LowGQX	.	GT	./.
chr2	27656854	.	A	.	.	LowGQX	END=27656857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27656858	.	A	.	.	LowGQX	.	GT	./.
chr2	27656859	.	A	.	.	LowGQX	END=27656860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27656861	.	G	.	.	LowGQX	.	GT	./.
chr2	27656862	.	G	.	.	LowGQX	END=27656867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27656868	.	G	.	.	LowGQX	.	GT	./.
chr2	27656869	.	C	.	.	LowGQX	END=27656877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27656878	.	A	.	.	LowGQX	.	GT	./.
chr2	27656879	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27656880	.	A	.	.	LowGQX	END=27656959	GT	./.
chr2	27657333	.	C	.	.	LowGQX	END=27657432	GT	./.
chr2	27657560	.	G	.	.	LowGQX	END=27657659	GT	./.
chr2	27657998	.	A	.	.	LowGQX	END=27658008	GT	./.
chr2	27658009	.	C	.	.	LowGQX	END=27658095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27658096	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27658097	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27658552	.	T	.	.	LowGQX	END=27658612	GT	./.
chr2	27658613	.	G	.	.	LowGQX	END=27658622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27658623	.	C	.	.	LowGQX	.	GT	./.
chr2	27658624	.	C	.	.	LowGQX	END=27658625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27658626	.	T	.	.	LowGQX	.	GT	./.
chr2	27658627	.	C	.	.	LowGQX	END=27658631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27658632	.	C	.	.	LowGQX	.	GT	./.
chr2	27658633	.	C	.	.	LowGQX	END=27658644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27658645	.	T	.	.	LowGQX	.	GT	./.
chr2	27658646	.	G	.	.	LowGQX	END=27658651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27659586	.	A	.	.	LowGQX	END=27659705	GT	./.
chr2	27659894	.	G	.	.	LowGQX	END=27659958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27659959	.	T	.	.	LowGQX	END=27659993	GT	./.
chr2	27660127	.	A	.	.	LowGQX	END=27660229	GT	./.
chr2	27662631	.	A	.	.	LowGQX	END=27662767	GT	./.
chr2	27663268	.	A	.	.	LowGQX	END=27663377	GT	./.
chr2	27663495	.	T	.	.	LowGQX	END=27663545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27663546	.	A	.	.	LowGQX	.	GT	./.
chr2	27663547	.	G	.	.	LowGQX	END=27663594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27663670	.	A	.	.	LowGQX	END=27663703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27663704	.	T	.	.	LowGQX	END=27663809	GT	./.
chr2	27663971	.	G	.	.	LowGQX	END=27664070	GT	./.
chr2	27664116	.	G	.	.	LowGQX	END=27664215	GT	./.
chr2	27664412	.	C	.	.	LowGQX	END=27664477	GT	./.
chr2	27664478	.	T	.	.	LowGQX	END=27664494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27664495	.	G	.	.	LowGQX	.	GT	./.
chr2	27664496	.	T	.	.	LowGQX	END=27664503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27664504	.	T	.	.	LowGQX	.	GT	./.
chr2	27664505	.	T	.	.	LowGQX	END=27664506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27664507	.	A	.	.	LowGQX	END=27664508	GT	./.
chr2	27664509	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27664510	.	T	.	.	LowGQX	.	GT	./.
chr2	27664511	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27664573	.	A	.	.	LowGQX	.	GT	./.
chr2	27664574	.	G	.	.	LowGQX	END=27664580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27664581	.	C	.	.	LowGQX	.	GT	./.
chr2	27664582	.	A	.	.	LowGQX	END=27664589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27664590	.	T	.	.	LowGQX	.	GT	./.
chr2	27664591	.	T	.	.	LowGQX	END=27664613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27664614	.	T	.	.	LowGQX	.	GT	./.
chr2	27664615	.	T	.	.	LowGQX	END=27664616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27664617	.	A	.	.	LowGQX	.	GT	./.
chr2	27664618	.	A	.	.	LowGQX	END=27664621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27664622	.	G	.	.	LowGQX	.	GT	./.
chr2	27664623	.	T	.	.	LowGQX	END=27664627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27664628	.	T	.	.	LowGQX	.	GT	./.
chr2	27664629	.	T	.	.	LowGQX	END=27664630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27664631	.	T	.	.	LowGQX	.	GT	./.
chr2	27664632	.	G	.	.	LowGQX	END=27664633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27664634	.	C	.	.	LowGQX	.	GT	./.
chr2	27664635	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27664636	.	G	.	.	LowGQX	.	GT	./.
chr2	27664637	.	G	.	.	LowGQX	END=27664639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27664640	.	C	.	.	LowGQX	.	GT	./.
chr2	27664641	.	A	.	.	LowGQX	END=27664654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27664655	.	A	.	.	LowGQX	.	GT	./.
chr2	27664656	.	G	.	.	LowGQX	END=27664657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27664658	.	C	.	.	LowGQX	.	GT	./.
chr2	27664659	.	G	.	.	LowGQX	END=27664670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27664671	.	T	.	.	LowGQX	END=27664681	GT	./.
chr2	27665184	.	C	.	.	LowGQX	END=27665243	GT	./.
chr2	27665244	.	A	.	.	LowGQX	END=27665274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27665275	.	A	.	.	LowGQX	.	GT	./.
chr2	27665276	.	C	.	.	LowGQX	END=27665302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27665303	.	T	.	.	LowGQX	.	GT	./.
chr2	27665304	.	T	.	.	LowGQX	END=27665337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27665338	.	T	.	.	LowGQX	.	GT	./.
chr2	27665339	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27665340	.	A	.	.	LowGQX	.	GT	./.
chr2	27665341	.	C	.	.	LowGQX	END=27665343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27665444	.	A	.	.	LowGQX	END=27665470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27665471	.	G	.	.	LowGQX	.	GT	./.
chr2	27665472	.	A	.	.	LowGQX	END=27665508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27665509	.	T	.	.	LowGQX	.	GT	./.
chr2	27665510	.	G	.	.	LowGQX	END=27665527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27665528	.	C	.	.	LowGQX	END=27665577	GT	./.
chr2	27665578	.	T	.	.	LowGQX	END=27665594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27665595	.	G	.	.	LowGQX	END=27665596	GT	./.
chr2	27665597	.	A	.	.	LowGQX	END=27665602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27665603	.	T	.	.	LowGQX	.	GT	./.
chr2	27665604	.	G	.	.	LowGQX	END=27665612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27665613	.	G	.	.	LowGQX	END=27665614	GT	./.
chr2	27665615	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27665616	.	G	.	.	LowGQX	END=27665617	GT	./.
chr2	27665618	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27665619	.	T	.	.	LowGQX	.	GT	./.
chr2	27665620	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27665621	.	G	.	.	LowGQX	END=27665623	GT	./.
chr2	27665624	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27665625	.	C	.	.	LowGQX	END=27665626	GT	./.
chr2	27665627	.	G	.	.	LowGQX	END=27665628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27665629	.	T	.	.	LowGQX	END=27665632	GT	./.
chr2	27665689	.	A	.	.	LowGQX	END=27665779	GT	./.
chr2	27665780	.	T	.	.	LowGQX	END=27665788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27665939	.	A	.	.	LowGQX	END=27665946	GT	./.
chr2	27665947	.	G	.	.	LowGQX	END=27666004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27666005	.	T	.	.	LowGQX	.	GT	./.
chr2	27666006	.	C	.	.	LowGQX	END=27666039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27666040	.	G	.	.	LowGQX	.	GT	./.
chr2	27666041	.	G	.	.	LowGQX	END=27666106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27666107	.	C	.	4.69	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.01:60:0
chr2	27666108	.	G	.	.	LowGQX	END=27666149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	27666263	.	A	.	.	LowGQX	END=27666268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27666269	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27666270	.	A	.	.	LowGQX	END=27666320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27666321	.	T	.	.	LowGQX	.	GT	./.
chr2	27666322	.	C	.	.	LowGQX	END=27666328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27666329	.	G	.	.	LowGQX	.	GT	./.
chr2	27666330	.	T	.	.	LowGQX	END=27666343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27666344	.	C	.	.	LowGQX	.	GT	./.
chr2	27666345	.	T	.	.	LowGQX	END=27666352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27666353	.	C	.	.	LowGQX	.	GT	./.
chr2	27666354	.	T	.	.	LowGQX	END=27666366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27666367	.	G	.	.	LowGQX	END=27666368	GT	./.
chr2	27666369	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27666370	.	C	.	.	LowGQX	.	GT	./.
chr2	27666371	.	C	.	.	LowGQX	END=27666376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27666377	.	G	.	.	LowGQX	.	GT	./.
chr2	27666378	.	G	.	.	LowGQX	END=27666380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27666381	.	G	.	.	LowGQX	END=27666401	GT	./.
chr2	27666814	.	A	.	.	LowGQX	END=27666925	GT	./.
chr2	27667294	.	A	.	.	LowGQX	END=27667315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27667316	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27667317	.	G	.	.	LowGQX	END=27667318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27667319	.	T	.	10.70	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.05:60:0
chr2	27667320	.	G	.	.	LowGQX	END=27667393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27667877	.	T	.	.	LowGQX	END=27667976	GT	./.
chr2	27668161	.	A	.	.	LowGQX	END=27668318	GT	./.
chr2	27668610	.	A	.	.	LowGQX	END=27668621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27668622	.	T	.	.	LowGQX	END=27668712	GT	./.
chr2	27668776	.	G	.	.	LowGQX	END=27668875	GT	./.
chr2	27669125	.	A	.	.	LowGQX	END=27669224	GT	./.
chr2	27670380	.	A	.	.	LowGQX	END=27670524	GT	./.
chr2	27670677	.	A	.	.	LowGQX	END=27670791	GT	./.
chr2	27671780	.	A	.	.	LowGQX	END=27671900	GT	./.
chr2	27672155	.	C	.	.	LowGQX	END=27672254	GT	./.
chr2	27672348	.	T	.	.	LowGQX	END=27672352	GT	./.
chr2	27672353	.	C	.	.	LowGQX	END=27672420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27672421	.	T	.	.	LowGQX	END=27672447	GT	./.
chr2	27672556	.	A	.	.	LowGQX	END=27672669	GT	./.
chr2	27672863	.	A	.	.	LowGQX	END=27672896	GT	./.
chr2	27672897	.	G	.	.	LowGQX	END=27672965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27676073	.	C	.	.	LowGQX	END=27676172	GT	./.
chr2	27676249	.	A	.	.	LowGQX	END=27676251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27676252	.	T	.	.	LowGQX	.	GT	./.
chr2	27676253	.	T	.	.	LowGQX	END=27676286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27676287	.	A	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	27676288	.	G	.	.	LowGQX	END=27676369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27676370	.	C	.	.	LowGQX	.	GT	./.
chr2	27676371	.	C	.	.	LowGQX	END=27676374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27676375	.	A	.	.	LowGQX	.	GT	./.
chr2	27676376	.	C	.	.	LowGQX	END=27676382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27676495	.	A	.	.	LowGQX	END=27676583	GT	./.
chr2	27676584	.	G	.	.	LowGQX	END=27676622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27676623	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	27676624	.	T	.	.	LowGQX	END=27676654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27676827	.	G	.	.	LowGQX	END=27676894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27676895	.	A	.	.	LowGQX	.	GT	./.
chr2	27676896	.	G	.	.	LowGQX	END=27676899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27676900	.	T	.	.	LowGQX	.	GT	./.
chr2	27676901	.	T	.	.	LowGQX	END=27677022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27677023	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	27677024	.	A	.	.	LowGQX	END=27677031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27677204	.	T	.	.	LowGQX	END=27677214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27677215	.	A	.	.	LowGQX	.	GT	./.
chr2	27677216	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr2	27677217	.	T	.	.	LowGQX	.	GT	./.
chr2	27677218	.	C	.	.	LowGQX	END=27677233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27677234	.	C	.	.	LowGQX	.	GT	./.
chr2	27677235	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	27677236	.	T	.	.	LowGQX	END=27677244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	27677245	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	27677246	.	C	.	.	LowGQX	END=27677270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	27677271	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	27677272	.	T	.	.	LowGQX	END=27677284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	27677285	.	C	.	.	LowGQX	.	GT	./.
chr2	27677286	.	C	.	.	LowGQX	END=27677288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	27677289	.	C	.	.	LowGQX	.	GT	./.
chr2	27677290	.	A	.	.	LowGQX	END=27677303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	27677431	.	T	.	.	LowGQX	END=27677530	GT	./.
chr2	27679376	.	A	.	.	LowGQX	END=27679522	GT	./.
chr2	27680504	.	A	.	.	LowGQX	END=27680507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680508	.	T	.	.	LowGQX	END=27680511	GT	./.
chr2	27680512	.	G	.	.	LowGQX	END=27680515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680516	.	T	.	.	LowGQX	.	GT	./.
chr2	27680517	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680518	.	T	.	.	LowGQX	END=27680519	GT	./.
chr2	27680520	.	C	.	.	LowGQX	END=27680523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680524	.	A	.	.	LowGQX	END=27680525	GT	./.
chr2	27680526	.	G	.	.	LowGQX	END=27680529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680530	.	A	.	.	LowGQX	.	GT	./.
chr2	27680531	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680532	.	T	.	.	LowGQX	.	GT	./.
chr2	27680533	.	G	.	.	LowGQX	END=27680538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680539	.	G	.	.	LowGQX	END=27680540	GT	./.
chr2	27680541	.	A	.	.	LowGQX	END=27680542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680543	.	A	.	.	LowGQX	END=27680544	GT	./.
chr2	27680545	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680546	.	T	.	.	LowGQX	END=27680547	GT	./.
chr2	27680548	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680549	.	A	.	.	LowGQX	.	GT	./.
chr2	27680550	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680551	.	T	.	.	LowGQX	END=27680555	GT	./.
chr2	27680556	.	C	.	.	LowGQX	END=27680557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680558	.	T	.	.	LowGQX	END=27680559	GT	./.
chr2	27680560	.	C	.	.	LowGQX	END=27680561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680562	.	A	.	.	LowGQX	END=27680564	GT	./.
chr2	27680565	.	C	.	.	LowGQX	END=27680566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680567	.	T	.	.	LowGQX	END=27680569	GT	./.
chr2	27680570	.	G	.	.	LowGQX	END=27680572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680573	.	T	.	.	LowGQX	.	GT	./.
chr2	27680574	.	C	.	.	LowGQX	END=27680575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680576	.	A	.	.	LowGQX	.	GT	./.
chr2	27680577	.	G	.	.	LowGQX	END=27680578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680579	.	T	.	.	LowGQX	END=27680580	GT	./.
chr2	27680581	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680582	.	T	.	.	LowGQX	.	GT	./.
chr2	27680583	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680584	.	G	.	.	LowGQX	END=27680585	GT	./.
chr2	27680586	.	A	.	.	LowGQX	END=27680589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680590	.	A	.	.	LowGQX	.	GT	./.
chr2	27680591	.	G	.	.	LowGQX	END=27680593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680594	.	T	.	.	LowGQX	.	GT	./.
chr2	27680595	.	C	.	.	LowGQX	END=27680596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680597	.	T	.	.	LowGQX	.	GT	./.
chr2	27680598	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680599	.	T	.	.	LowGQX	END=27680602	GT	./.
chr2	27680603	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27680604	.	G	.	.	LowGQX	END=27680624	GT	./.
chr2	27680706	.	A	.	.	LowGQX	END=27680845	GT	./.
chr2	27680991	.	A	.	.	LowGQX	END=27681030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27681031	.	C	.	.	LowGQX	END=27681092	GT	./.
chr2	27681641	.	C	.	.	LowGQX	END=27681740	GT	./.
chr2	27682243	.	A	.	.	LowGQX	END=27682391	GT	./.
chr2	27682574	.	A	.	.	LowGQX	END=27682645	GT	./.
chr2	27682646	.	C	.	.	LowGQX	END=27682686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27682687	.	A	.	.	LowGQX	.	GT	./.
chr2	27682688	.	G	.	.	LowGQX	END=27682698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27683872	.	T	.	.	LowGQX	END=27683880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27683881	.	C	.	.	LowGQX	.	GT	./.
chr2	27683882	.	C	.	.	LowGQX	END=27683889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27683890	.	A	.	.	LowGQX	.	GT	./.
chr2	27683891	.	A	.	.	LowGQX	END=27683937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27683938	.	A	.	.	LowGQX	.	GT	./.
chr2	27683939	.	T	.	.	LowGQX	END=27683946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27683947	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27683948	.	A	.	.	LowGQX	END=27683971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27684134	.	A	.	.	LowGQX	END=27684386	GT	./.
chr2	27684615	.	A	.	.	LowGQX	END=27684714	GT	./.
chr2	27685565	.	T	.	.	LowGQX	END=27685644	GT	./.
chr2	27685645	.	C	.	.	LowGQX	END=27685660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27685661	.	C	.	.	LowGQX	.	GT	./.
chr2	27685662	.	T	.	.	LowGQX	END=27685664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27685957	.	T	.	.	LowGQX	END=27686056	GT	./.
chr2	27688276	.	A	.	.	LowGQX	.	GT	./.
chr2	27688277	.	C	.	.	LowGQX	END=27688281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27688282	.	C	.	.	LowGQX	END=27688284	GT	./.
chr2	27688285	.	C	.	.	LowGQX	END=27688295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27688296	.	T	.	.	LowGQX	.	GT	./.
chr2	27688297	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27688298	.	C	.	.	LowGQX	.	GT	./.
chr2	27688299	.	C	.	.	LowGQX	END=27688301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27688302	.	G	.	.	LowGQX	END=27688303	GT	./.
chr2	27688304	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	27688305	.	T	.	.	LowGQX	END=27688308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27688309	.	G	.	.	LowGQX	.	GT	./.
chr2	27688310	.	T	.	.	LowGQX	END=27688311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27688312	.	C	.	.	LowGQX	.	GT	./.
chr2	27688313	.	C	.	.	LowGQX	END=27688323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27688324	.	A	.	.	LowGQX	END=27688327	GT	./.
chr2	27688328	.	T	.	.	LowGQX	END=27688334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27688335	.	A	.	.	LowGQX	.	GT	./.
chr2	27688336	.	T	.	.	LowGQX	END=27688339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27688340	.	C	.	.	LowGQX	.	GT	./.
chr2	27688341	.	T	.	.	LowGQX	END=27688344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27688345	.	T	.	.	LowGQX	.	GT	./.
chr2	27688346	.	T	.	.	LowGQX	END=27688349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27688350	.	G	.	.	LowGQX	.	GT	./.
chr2	27688351	.	G	.	.	LowGQX	END=27688358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27688359	.	T	.	.	LowGQX	.	GT	./.
chr2	27688360	.	C	.	.	LowGQX	END=27688387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27688611	.	A	.	.	LowGQX	END=27688751	GT	./.
chr2	27693793	.	A	.	.	LowGQX	END=27693802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27693803	.	T	.	.	LowGQX	END=27693992	GT	./.
chr2	27695041	.	C	.	.	LowGQX	END=27695053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27695054	.	G	.	.	LowGQX	END=27695231	GT	./.
chr2	27699501	.	T	.	.	LowGQX	END=27699600	GT	./.
chr2	27700082	.	A	.	.	LowGQX	END=27700189	GT	./.
chr2	27700403	.	A	.	.	LowGQX	END=27700502	GT	./.
chr2	27700860	.	A	.	.	LowGQX	END=27701025	GT	./.
chr2	27702374	.	A	.	.	LowGQX	END=27702473	GT	./.
chr2	27702891	.	A	.	.	LowGQX	END=27703018	GT	./.
chr2	27703911	.	A	.	.	LowGQX	END=27704129	GT	./.
chr2	27706150	.	T	.	.	LowGQX	END=27706249	GT	./.
chr2	27706437	.	C	.	.	LowGQX	END=27706503	GT	./.
chr2	27706504	.	G	.	.	LowGQX	END=27706518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27706519	.	A	.	.	LowGQX	END=27706520	GT	./.
chr2	27706521	.	A	.	.	LowGQX	END=27706524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27706525	.	A	.	.	LowGQX	END=27706526	GT	./.
chr2	27706527	.	C	.	.	LowGQX	END=27706536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27706722	.	T	.	.	LowGQX	END=27706738	GT	./.
chr2	27706739	.	C	.	.	LowGQX	END=27706740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27706741	.	T	.	.	LowGQX	.	GT	./.
chr2	27706742	.	C	.	.	LowGQX	END=27706745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27706746	.	T	.	.	LowGQX	.	GT	./.
chr2	27706747	.	C	.	.	LowGQX	END=27706752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27706753	.	G	.	.	LowGQX	END=27706754	GT	./.
chr2	27706755	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27706756	.	C	.	.	LowGQX	.	GT	./.
chr2	27706757	.	A	.	.	LowGQX	END=27706767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27706768	.	T	.	.	LowGQX	END=27706769	GT	./.
chr2	27706770	.	T	.	.	LowGQX	END=27706771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27706772	.	T	.	.	LowGQX	END=27706773	GT	./.
chr2	27706774	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27706775	.	T	.	.	LowGQX	.	GT	./.
chr2	27706776	.	G	.	.	LowGQX	END=27706784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27706785	.	T	.	.	LowGQX	.	GT	./.
chr2	27706786	.	G	.	.	LowGQX	END=27706794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27706795	.	T	.	.	LowGQX	.	GT	./.
chr2	27706796	.	G	.	.	LowGQX	END=27706802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27706803	.	C	.	.	LowGQX	.	GT	./.
chr2	27706804	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27706805	.	C	.	.	LowGQX	.	GT	./.
chr2	27706806	.	T	.	.	LowGQX	END=27706809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27706810	.	T	.	.	LowGQX	.	GT	./.
chr2	27706811	.	G	.	.	LowGQX	END=27706821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27707047	.	T	.	.	LowGQX	END=27707146	GT	./.
chr2	27707883	.	A	.	.	LowGQX	END=27707999	GT	./.
chr2	27708225	.	A	.	.	LowGQX	END=27708372	GT	./.
chr2	27712452	.	A	.	.	LowGQX	END=27712453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27712454	.	G	.	.	LowGQX	.	GT	./.
chr2	27712455	.	G	.	.	LowGQX	END=27712460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27712461	.	G	.	.	LowGQX	.	GT	./.
chr2	27712462	.	A	.	.	LowGQX	END=27712469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27712470	.	G	.	.	LowGQX	.	GT	./.
chr2	27712471	.	C	.	.	LowGQX	END=27712481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27712482	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27712483	.	T	.	.	LowGQX	END=27712523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27712524	.	G	.	.	LowGQX	.	GT	./.
chr2	27712525	.	C	.	.	LowGQX	END=27712526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27712527	.	C	.	.	LowGQX	.	GT	./.
chr2	27712528	.	A	.	.	LowGQX	END=27712536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27712537	.	T	.	.	LowGQX	.	GT	./.
chr2	27712538	.	C	.	.	LowGQX	END=27712547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27712548	.	T	.	.	LowGQX	.	GT	./.
chr2	27712549	.	A	.	.	LowGQX	END=27712551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715278	.	A	.	.	LowGQX	END=27715324	GT	./.
chr2	27715325	.	G	.	.	LowGQX	END=27715338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715339	.	A	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	27715340	.	C	.	.	LowGQX	END=27715342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715343	.	T	.	.	LowGQX	.	GT	./.
chr2	27715344	.	T	.	.	LowGQX	END=27715358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715359	.	T	.	.	LowGQX	.	GT	./.
chr2	27715360	.	G	.	.	LowGQX	END=27715361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715362	.	C	.	.	LowGQX	.	GT	./.
chr2	27715363	.	C	.	.	LowGQX	END=27715375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715376	.	T	.	.	LowGQX	.	GT	./.
chr2	27715377	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715531	.	A	.	.	LowGQX	END=27715534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715535	.	G	.	.	LowGQX	END=27715536	GT	./.
chr2	27715537	.	C	.	.	LowGQX	END=27715538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715539	.	T	.	.	LowGQX	END=27715540	GT	./.
chr2	27715541	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715542	.	C	.	.	LowGQX	.	GT	./.
chr2	27715543	.	C	.	.	LowGQX	END=27715544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715545	.	C	.	.	LowGQX	.	GT	./.
chr2	27715546	.	A	.	.	LowGQX	END=27715548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715549	.	G	.	.	LowGQX	.	GT	./.
chr2	27715550	.	G	.	.	LowGQX	END=27715552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715553	.	T	.	.	LowGQX	END=27715555	GT	./.
chr2	27715556	.	C	.	.	LowGQX	END=27715568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715569	.	T	.	.	LowGQX	END=27715570	GT	./.
chr2	27715571	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715572	.	C	.	.	LowGQX	END=27715574	GT	./.
chr2	27715575	.	C	.	.	LowGQX	END=27715576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715577	.	C	.	.	LowGQX	.	GT	./.
chr2	27715578	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715579	.	T	.	.	LowGQX	.	GT	./.
chr2	27715580	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715581	.	T	.	.	LowGQX	.	GT	./.
chr2	27715582	.	C	.	.	LowGQX	END=27715584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715585	.	T	.	.	LowGQX	.	GT	./.
chr2	27715586	.	T	.	.	LowGQX	END=27715593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715594	.	G	.	.	LowGQX	.	GT	./.
chr2	27715595	.	G	.	.	LowGQX	END=27715596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715597	.	T	.	.	LowGQX	.	GT	./.
chr2	27715598	.	T	.	.	LowGQX	END=27715600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715601	.	T	.	.	LowGQX	.	GT	./.
chr2	27715602	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715603	.	T	.	.	LowGQX	END=27715605	GT	./.
chr2	27715606	.	G	.	.	LowGQX	END=27715611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715612	.	T	.	.	LowGQX	.	GT	./.
chr2	27715613	.	T	.	.	LowGQX	END=27715614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715615	.	T	.	.	LowGQX	.	GT	./.
chr2	27715616	.	C	.	.	LowGQX	END=27715617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715618	.	T	.	.	LowGQX	.	GT	./.
chr2	27715619	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715620	.	G	.	.	LowGQX	END=27715622	GT	./.
chr2	27715623	.	G	.	.	LowGQX	END=27715627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715628	.	C	.	.	LowGQX	END=27715629	GT	./.
chr2	27715630	.	T	.	.	LowGQX	END=27715634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715635	.	A	.	.	LowGQX	.	GT	./.
chr2	27715636	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715637	.	G	.	.	LowGQX	END=27715639	GT	./.
chr2	27715640	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715641	.	G	.	.	LowGQX	.	GT	./.
chr2	27715642	.	A	.	.	LowGQX	END=27715644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715645	.	A	.	.	LowGQX	END=27715646	GT	./.
chr2	27715647	.	C	.	.	LowGQX	END=27715648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715649	.	C	.	.	LowGQX	.	GT	./.
chr2	27715650	.	A	.	.	LowGQX	END=27715656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715657	.	G	.	.	LowGQX	.	GT	./.
chr2	27715658	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27715659	.	T	.	.	LowGQX	.	GT	./.
chr2	27716251	.	C	.	.	LowGQX	END=27716350	GT	./.
chr2	27716795	.	A	.	.	LowGQX	END=27716798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27716799	.	G	.	.	LowGQX	END=27716800	GT	./.
chr2	27716801	.	G	.	.	LowGQX	END=27716849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27716850	.	T	.	.	LowGQX	.	GT	./.
chr2	27716851	.	G	.	.	LowGQX	END=27716862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27716863	.	C	.	.	LowGQX	.	GT	./.
chr2	27716864	.	T	.	.	LowGQX	END=27716900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27716901	.	T	.	.	LowGQX	END=27716983	GT	./.
chr2	27716984	.	C	.	.	LowGQX	END=27717003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27717216	.	A	.	.	LowGQX	END=27717252	GT	./.
chr2	27717253	.	C	.	.	LowGQX	END=27717276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27717277	.	T	.	.	LowGQX	.	GT	./.
chr2	27717278	.	G	.	.	LowGQX	END=27717282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27717283	.	A	.	.	LowGQX	.	GT	./.
chr2	27717284	.	G	.	.	LowGQX	END=27717335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27717372	.	A	.	.	LowGQX	END=27717431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27717432	.	G	.	.	LowGQX	.	GT	./.
chr2	27717433	.	G	.	.	LowGQX	END=27717440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27717441	.	T	.	.	LowGQX	END=27717548	GT	./.
chr2	27719721	.	G	.	.	PASS	END=27719729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr2	27719730	.	G	.	.	PASS	END=27719750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	27719751	.	G	.	.	PASS	END=27719762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	27719763	.	C	.	.	PASS	END=27719823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	27719824	.	A	.	.	PASS	END=27719882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	27720060	.	A	.	.	PASS	END=27720087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	27720088	.	T	.	.	PASS	END=27720121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	27720122	.	C	.	.	PASS	END=27720238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	27720239	.	G	.	.	PASS	END=27720264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	27720265	.	A	.	.	PASS	END=27720317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	27720378	.	C	.	.	PASS	END=27720465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	27720466	.	A	.	.	PASS	END=27720497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	27720498	.	G	.	.	PASS	END=27720543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr2	27720544	.	C	.	.	PASS	END=27720548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr2	27721066	.	A	.	.	PASS	END=27721068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:60
chr2	27721069	.	C	.	.	PASS	END=27721072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr2	27721073	.	T	.	.	PASS	END=27721078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr2	27721079	.	C	.	.	PASS	END=27721082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr2	27721083	.	A	.	.	PASS	END=27721084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:48:60
chr2	27721085	.	C	.	.	PASS	END=27721086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	27721087	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:51:60
chr2	27721088	.	G	.	.	PASS	END=27721126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr2	27721127	.	A	.	.	PASS	END=27721130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:57:60
chr2	27721131	.	G	.	.	PASS	END=27721142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr2	27721143	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:84:60
chr2	27721144	.	T	.	.	PASS	END=27721145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr2	27721146	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:87:60
chr2	27721147	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:57:60
chr2	27721148	.	G	.	.	PASS	END=27721150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr2	27721151	.	T	.	90.18	PASS	DP=36;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:28:36:60.19:60:60
chr2	27721152	.	G	.	.	PASS	END=27721153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	27721154	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:60
chr2	27721155	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:84:60
chr2	27721156	.	G	.	.	PASS	END=27721159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:60:60
chr2	27721160	.	C	.	.	PASS	END=27721161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr2	27721162	.	C	.	.	PASS	END=27721173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr2	27721174	.	T	.	.	PASS	END=27721178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr2	27721179	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr2	27721180	.	T	.	.	PASS	END=27721183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr2	27721184	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:48:60
chr2	27721185	.	A	.	.	PASS	END=27721187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	27721188	.	T	.	.	PASS	END=27721189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:60
chr2	27721190	.	G	.	.	PASS	END=27721196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr2	27721197	.	A	.	.	PASS	END=27721203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr2	27721204	.	T	.	.	PASS	END=27721206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr2	27721207	.	C	.	.	PASS	END=27721210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	27721211	.	T	.	.	PASS	END=27721215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr2	27721216	.	T	.	.	PASS	END=27721233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	27721234	.	A	.	.	PASS	END=27721238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	27721239	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:45:60
chr2	27721240	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:9:60
chr2	27721241	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:51:60
chr2	27721540	.	A	.	.	PASS	END=27721591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	27721592	.	T	.	.	PASS	END=27721647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	27721648	.	A	.	.	PASS	END=27721707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	27721708	.	T	.	.	PASS	END=27721715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	27721958	.	T	.	.	PASS	END=27721970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr2	27721971	.	T	C	395.64	PASS	BaseQRankSum=-1.378;DP=61;Dels=0.00;FS=1.153;HRun=2;HaplotypeScore=14.2990;MQ=60;MQ0=0;MQRankSum=0.033;QD=6.49;ReadPosRankSum=-0.738;SB=-133.20	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:43,17:61:99:426,0,1161:60:99:0.283
chr2	27721972	.	C	.	.	PASS	END=27722002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:84:60
chr2	27722003	.	T	.	.	PASS	END=27722022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	27722023	.	C	.	.	PASS	END=27722050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	27722051	.	G	.	.	PASS	END=27722126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	27722213	.	G	.	.	PASS	END=27722239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	27722240	.	A	.	.	PASS	END=27722355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	27722356	.	A	.	.	PASS	END=27722368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	27723951	.	C	.	.	PASS	END=27723954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:59
chr2	27723955	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:33:59
chr2	27723956	.	A	.	.	PASS	END=27723961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:59
chr2	27723962	.	A	.	.	PASS	END=27723989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:89:59
chr2	27723990	.	C	.	.	PASS	END=27724013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	27724014	.	G	.	.	PASS	END=27724061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	27724062	.	G	.	.	PASS	END=27724105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	27724106	.	C	.	.	PASS	END=27724131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	27724132	.	A	.	.	PASS	END=27724147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	27724557	.	G	.	.	LowGQX	END=27724677	GT	./.
chr2	27726330	.	T	.	.	PASS	END=27726338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	27726339	.	C	.	.	PASS	END=27726366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	27726367	.	T	.	.	PASS	END=27726395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	27726396	.	A	.	.	PASS	END=27726488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	27726489	.	A	.	.	PASS	END=27726505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	27726506	.	T	.	.	PASS	END=27726525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:90:60
chr2	27726526	.	C	.	.	PASS	END=27726537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	27728534	.	A	.	.	PASS	END=27728574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	27728575	.	A	.	.	PASS	END=27728673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	27728674	.	T	.	.	PASS	END=27728691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	27728692	.	A	.	.	PASS	END=27728728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	27728729	.	G	.	.	PASS	END=27728745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr2	27728746	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:66:60
chr2	27728747	.	G	.	.	PASS	END=27728753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr2	27728754	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:75:60
chr2	27729297	.	T	.	.	PASS	END=27729316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	27729317	.	C	.	.	PASS	END=27729430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	27729431	.	A	.	.	PASS	END=27729455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	27729456	.	T	.	.	PASS	END=27729477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	27729478	.	T	.	.	PASS	END=27729479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	27729480	.	G	A	598.32	PASS	BaseQRankSum=0.721;DP=64;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=0.050;QD=9.35;ReadPosRankSum=-0.978;SB=-207.08	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:40,23:64:99:628,0,1166:60:99:0.365
chr2	27729481	.	C	.	.	PASS	END=27729497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	27729604	.	G	.	.	PASS	END=27729629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	27729630	.	G	.	.	PASS	END=27729705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	27729706	.	C	.	.	PASS	END=27729749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	27729750	.	C	.	.	PASS	END=27729778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	27729779	.	C	.	.	PASS	END=27729803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	27730051	.	C	.	.	PASS	END=27730073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	27730074	.	C	.	.	PASS	END=27730155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	27730156	.	A	.	.	PASS	END=27730205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	27730206	.	C	.	.	PASS	END=27730223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	27730224	.	T	.	.	PASS	END=27730229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	27730497	.	T	.	.	PASS	END=27730513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	27730514	.	A	.	.	PASS	END=27730530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	27730531	.	A	.	.	PASS	END=27730578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	27730579	.	T	.	.	PASS	END=27730653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	27730654	.	A	.	.	PASS	END=27730681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	27730682	.	G	.	.	PASS	END=27730695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	27730793	.	G	.	.	PASS	END=27730873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	27730874	.	A	.	.	PASS	END=27730915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	27730916	.	A	.	.	PASS	END=27730939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	27730940	.	T	C	951.96	PASS	BaseQRankSum=0.496;DP=75;Dels=0.00;FS=2.072;HRun=1;HaplotypeScore=12.4154;MQ=60;MQ0=0;MQRankSum=0.560;QD=12.69;ReadPosRankSum=0.390;SB=-297.92	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,33:75:99:982,0,1172:60:99:0.440
chr2	27730941	.	G	.	.	PASS	END=27731013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:93:60
chr2	27731014	.	C	.	.	PASS	END=27731144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	27731145	.	G	.	.	PASS	END=27731169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	27732365	.	A	.	.	LowGQX	END=27732464	GT	./.
chr2	27741604	.	T	.	.	PASS	END=27741627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	27741628	.	A	.	.	PASS	END=27741630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	27741631	.	C	.	.	PASS	END=27741632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr2	27741633	.	C	.	.	PASS	END=27741638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr2	27741639	.	T	.	.	PASS	END=27741667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	27741668	.	A	.	.	PASS	END=27741669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr2	27741670	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:33:60
chr2	27741671	.	T	.	.	PASS	END=27741682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr2	27741683	.	G	.	.	PASS	END=27741689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr2	27741690	.	G	.	.	PASS	END=27741719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr2	27741720	.	T	.	.	PASS	END=27741787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:85:60
chr2	27741788	.	C	.	.	PASS	END=27741817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr2	27741818	.	G	.	.	PASS	END=27741833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr2	27741834	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:54:60
chr2	27741835	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:39:60
chr2	27741836	.	A	.	.	PASS	END=27741849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:60:60
chr2	27741850	.	C	.	.	PASS	END=27741855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr2	27745276	.	T	.	.	PASS	END=27745288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	27745289	.	C	.	.	PASS	END=27745309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr2	27745310	.	T	.	.	PASS	END=27745311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:57:60
chr2	27745312	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:27:60
chr2	27745313	.	C	.	.	PASS	END=27745321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:60
chr2	27745322	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:30:60
chr2	27745323	.	T	.	.	PASS	END=27745326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr2	27745327	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:36:60
chr2	27745328	.	G	.	.	PASS	END=27745330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr2	27745331	.	T	.	.	PASS	END=27745396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:82:60
chr2	27745397	.	T	.	.	PASS	END=27745472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	27745473	.	A	.	.	PASS	END=27745481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:96:60
chr2	27745482	.	C	.	.	PASS	END=27745492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr2	27745493	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:51:60
chr2	27745494	.	A	.	.	PASS	END=27745509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	27745510	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:62:60
chr2	27745511	.	A	.	.	PASS	END=27745512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr2	27746085	.	C	.	.	PASS	END=27746104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	27746105	.	G	.	.	PASS	END=27746129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	27746130	.	C	.	.	PASS	END=27746137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	27746138	.	G	.	.	PASS	END=27746160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	27746161	.	T	.	.	PASS	END=27746192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	27746193	.	G	.	.	PASS	END=27746309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	27746310	.	C	.	.	PASS	END=27746324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	27746325	.	G	.	.	PASS	END=27746347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	27746348	.	A	.	.	PASS	END=27746357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	27760293	.	A	.	.	LowGQX	END=27760437	GT	./.
chr2	27788193	.	T	.	.	LowGQX	END=27788292	GT	./.
chr2	27788888	.	A	.	.	LowGQX	END=27788987	GT	./.
chr2	27789154	.	A	.	.	LowGQX	END=27789253	GT	./.
chr2	27789601	.	G	.	.	LowGQX	END=27790011	GT	./.
chr2	27799438	.	C	.	.	LowGQX	END=27801089	GT	./.
chr2	27801090	.	C	.	.	LowGQX	END=27801096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27801097	.	A	.	.	LowGQX	.	GT	./.
chr2	27801098	.	G	.	.	LowGQX	END=27801148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27801149	.	A	.	.	LowGQX	.	GT	./.
chr2	27801150	.	A	.	.	LowGQX	END=27801154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27801155	.	A	.	.	LowGQX	.	GT	./.
chr2	27801156	.	A	.	.	LowGQX	END=27801366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27801367	.	T	.	.	LowGQX	END=27801639	GT	./.
chr2	27801640	.	G	.	.	LowGQX	END=27801835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27801836	.	A	.	.	LowGQX	END=27802690	GT	./.
chr2	27802691	.	G	.	.	LowGQX	END=27802693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802694	.	G	.	.	LowGQX	.	GT	./.
chr2	27802695	.	C	.	.	LowGQX	END=27802696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802697	.	A	.	.	LowGQX	.	GT	./.
chr2	27802698	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802699	.	A	.	.	LowGQX	.	GT	./.
chr2	27802700	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802701	.	G	.	.	LowGQX	END=27802702	GT	./.
chr2	27802703	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802704	.	C	.	.	LowGQX	END=27802710	GT	./.
chr2	27802711	.	T	.	.	LowGQX	END=27802713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802714	.	A	.	.	LowGQX	.	GT	./.
chr2	27802715	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802716	.	A	.	.	LowGQX	.	GT	./.
chr2	27802717	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802718	.	A	.	.	LowGQX	END=27802719	GT	./.
chr2	27802720	.	C	.	.	LowGQX	END=27802723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802724	.	A	.	.	LowGQX	END=27802725	GT	./.
chr2	27802726	.	A	.	.	LowGQX	END=27802727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802728	.	C	.	.	LowGQX	.	GT	./.
chr2	27802729	.	T	.	.	LowGQX	END=27802734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802735	.	G	.	.	LowGQX	END=27802736	GT	./.
chr2	27802737	.	A	.	.	LowGQX	END=27802738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802739	.	T	.	.	LowGQX	.	GT	./.
chr2	27802740	.	C	.	.	LowGQX	END=27802741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802742	.	A	.	.	LowGQX	END=27802743	GT	./.
chr2	27802744	.	T	.	.	LowGQX	END=27802746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802747	.	C	.	.	LowGQX	.	GT	./.
chr2	27802748	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802749	.	C	.	.	LowGQX	.	GT	./.
chr2	27802750	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27802751	.	C	.	.	LowGQX	END=27802760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27802761	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27802762	.	C	.	.	LowGQX	END=27802775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27802776	.	G	.	.	LowGQX	.	GT	./.
chr2	27802777	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27802778	.	T	.	.	LowGQX	.	GT	./.
chr2	27802779	.	C	.	.	LowGQX	END=27802781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27802782	.	G	.	.	LowGQX	.	GT	./.
chr2	27802783	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27802784	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27802785	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27802786	.	T	.	.	LowGQX	END=27802787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27802788	.	A	.	.	LowGQX	.	GT	./.
chr2	27802789	.	A	.	.	LowGQX	END=27802793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27802794	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27802795	.	C	.	.	LowGQX	END=27802807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27802808	.	G	.	.	LowGQX	.	GT	./.
chr2	27802809	.	T	.	.	LowGQX	END=27802810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27802811	.	T	.	.	LowGQX	END=27802812	GT	./.
chr2	27802813	.	G	.	.	LowGQX	END=27802816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27802817	.	A	.	.	LowGQX	.	GT	./.
chr2	27802818	.	T	.	.	LowGQX	END=27802819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27802820	.	T	.	.	LowGQX	.	GT	./.
chr2	27802821	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27802822	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27802823	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27802824	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27802825	.	G	.	.	LowGQX	END=27802832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27802833	.	T	.	.	LowGQX	END=27802834	GT	./.
chr2	27802835	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27802836	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27802837	.	A	.	.	LowGQX	END=27802840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27802841	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27802842	.	A	.	.	LowGQX	END=27802845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802846	.	T	.	.	LowGQX	END=27802847	GT	./.
chr2	27802848	.	C	.	.	LowGQX	END=27802855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802856	.	T	.	.	LowGQX	.	GT	./.
chr2	27802857	.	T	.	.	LowGQX	END=27802864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802865	.	T	.	.	LowGQX	.	GT	./.
chr2	27802866	.	T	.	.	LowGQX	END=27802872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802873	.	T	.	.	LowGQX	.	GT	./.
chr2	27802874	.	T	.	.	LowGQX	END=27802880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802881	.	C	.	.	LowGQX	.	GT	./.
chr2	27802882	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802883	.	A	.	.	LowGQX	END=27802884	GT	./.
chr2	27802885	.	A	.	.	LowGQX	END=27802888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802889	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr2	27802890	.	C	.	.	LowGQX	END=27802893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802894	.	T	.	.	LowGQX	END=27802895	GT	./.
chr2	27802896	.	G	.	.	LowGQX	END=27802899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27802900	.	G	.	.	LowGQX	END=27803725	GT	./.
chr2	27803726	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27803727	.	G	.	.	LowGQX	.	GT	./.
chr2	27803728	.	G	.	.	LowGQX	END=27804038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27804039	.	C	.	.	LowGQX	END=27804212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	27804213	.	A	.	.	LowGQX	END=27804260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27804261	.	A	.	.	LowGQX	END=27804390	GT	./.
chr2	27804391	.	A	.	.	LowGQX	END=27804412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27804413	.	A	.	.	LowGQX	.	GT	./.
chr2	27804414	.	G	.	.	LowGQX	END=27804431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27804432	.	T	.	.	LowGQX	.	GT	./.
chr2	27804433	.	C	.	.	LowGQX	END=27804447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27804448	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27804449	.	T	.	.	LowGQX	END=27804453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27804454	.	G	.	.	LowGQX	.	GT	./.
chr2	27804455	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27804456	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27804457	.	C	.	.	LowGQX	.	GT	./.
chr2	27804458	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27804459	.	T	.	.	LowGQX	.	GT	./.
chr2	27804460	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27804461	.	C	.	.	LowGQX	END=27804462	GT	./.
chr2	27804463	.	A	.	.	LowGQX	END=27804466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27804467	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27804468	.	A	.	.	LowGQX	END=27804474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27804475	.	G	.	.	LowGQX	.	GT	./.
chr2	27804476	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27804477	.	G	.	.	LowGQX	.	GT	./.
chr2	27804478	.	G	.	.	LowGQX	END=27804484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27804485	.	A	.	.	LowGQX	.	GT	./.
chr2	27804486	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27804487	.	A	.	.	LowGQX	.	GT	./.
chr2	27804488	.	G	.	.	LowGQX	END=27804495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27804496	.	A	.	.	LowGQX	.	GT	./.
chr2	27804497	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27804498	.	T	.	.	LowGQX	.	GT	./.
chr2	27804499	.	G	.	.	LowGQX	END=27804501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27804502	.	G	.	.	LowGQX	END=27804504	GT	./.
chr2	27804505	.	C	.	.	LowGQX	END=27804506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27804507	.	T	.	.	LowGQX	.	GT	./.
chr2	27804508	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27804509	.	T	.	.	LowGQX	.	GT	./.
chr2	27804510	.	G	.	.	LowGQX	END=27804550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27804551	.	T	.	.	LowGQX	.	GT	./.
chr2	27804552	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27804553	.	C	.	.	LowGQX	END=27805102	GT	./.
chr2	27805103	.	C	.	.	LowGQX	END=27805260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27805261	.	T	.	.	LowGQX	.	GT	./.
chr2	27805262	.	C	.	.	LowGQX	END=27805270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27805271	.	T	.	.	LowGQX	END=27805396	GT	./.
chr2	27805945	.	C	.	.	LowGQX	END=27806044	GT	./.
chr2	27806453	.	A	.	.	LowGQX	END=27806604	GT	./.
chr2	27820932	.	A	.	.	LowGQX	END=27821123	GT	./.
chr2	27822448	.	A	.	.	LowGQX	END=27822547	GT	./.
chr2	27822829	.	T	.	.	LowGQX	END=27822928	GT	./.
chr2	27823556	.	A	.	.	LowGQX	END=27823684	GT	./.
chr2	27824217	.	T	.	.	LowGQX	END=27824224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27824225	.	A	.	.	LowGQX	.	GT	./.
chr2	27824226	.	A	.	.	LowGQX	END=27824280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27824281	.	A	.	.	LowGQX	.	GT	./.
chr2	27824282	.	T	.	.	LowGQX	END=27824291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27824292	.	G	.	.	LowGQX	.	GT	./.
chr2	27824293	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27824294	.	A	.	.	LowGQX	.	GT	./.
chr2	27824295	.	A	.	.	LowGQX	END=27824307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27824308	.	T	.	.	LowGQX	END=27824309	GT	./.
chr2	27824310	.	G	.	.	LowGQX	END=27824313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27824314	.	G	.	.	LowGQX	.	GT	./.
chr2	27824315	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27824316	.	G	.	.	LowGQX	.	GT	./.
chr2	27825328	.	A	.	.	LowGQX	END=27825365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27825366	.	A	.	.	LowGQX	.	GT	./.
chr2	27825367	.	G	.	.	LowGQX	END=27825383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27825384	.	C	.	.	LowGQX	.	GT	./.
chr2	27825385	.	G	.	.	LowGQX	END=27825430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27826005	.	A	.	.	LowGQX	END=27826176	GT	./.
chr2	27830700	.	T	.	.	LowGQX	END=27830754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27830755	.	A	.	.	LowGQX	END=27830908	GT	./.
chr2	27838033	.	A	.	.	LowGQX	END=27838138	GT	./.
chr2	27839111	.	A	.	.	LowGQX	END=27839210	GT	./.
chr2	27840338	.	A	.	.	LowGQX	END=27840430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27840431	.	A	.	.	LowGQX	END=27840440	GT	./.
chr2	27844018	.	A	.	.	LowGQX	END=27844019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27844020	.	G	.	.	LowGQX	.	GT	./.
chr2	27844021	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27844022	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	27844023	.	T	.	.	LowGQX	END=27844330	GT	./.
chr2	27849828	.	A	.	.	LowGQX	END=27849938	GT	./.
chr2	27849939	.	G	.	.	LowGQX	END=27849963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:59
chr2	27849964	.	A	.	.	LowGQX	.	GT	./.
chr2	27849965	.	C	.	.	LowGQX	END=27849982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:59
chr2	27849983	.	C	.	.	LowGQX	.	GT	./.
chr2	27849984	.	T	.	.	LowGQX	END=27849987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:59
chr2	27849988	.	T	.	.	LowGQX	.	GT	./.
chr2	27849989	.	C	.	.	LowGQX	END=27850004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:59
chr2	27850005	.	C	.	.	LowGQX	.	GT	./.
chr2	27850006	.	T	.	.	LowGQX	END=27850019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:59
chr2	27850020	.	A	.	.	LowGQX	.	GT	./.
chr2	27850021	.	G	.	.	LowGQX	END=27850029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:59
chr2	27850030	.	C	.	.	LowGQX	.	GT	./.
chr2	27850031	.	T	.	.	LowGQX	END=27850042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:59
chr2	27850043	.	C	.	.	LowGQX	.	GT	./.
chr2	27850044	.	T	.	.	LowGQX	END=27850049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:59
chr2	27850050	.	A	.	.	LowGQX	END=27850051	GT	./.
chr2	27850052	.	T	.	.	LowGQX	END=27850053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:59
chr2	27850054	.	C	.	.	LowGQX	.	GT	./.
chr2	27850055	.	C	.	.	LowGQX	END=27850072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:59
chr2	27850073	.	C	.	.	LowGQX	.	GT	./.
chr2	27850074	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr2	27850075	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27850076	.	T	.	.	LowGQX	END=27850086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27850087	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr2	27850088	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	27850089	.	C	.	.	LowGQX	END=27850133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	27850134	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	27850135	.	G	.	.	LowGQX	END=27850173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	27850174	.	G	A	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.727;QD=0.79;ReadPosRankSum=-0.727;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,1:4:30.28:30,0,75:60:3:0.250
chr2	27850175	.	T	.	.	LowGQX	END=27850202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	27850203	.	T	C	6.77	LowGQX;LowQD	BaseQRankSum=0.000;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-1.026;QD=1.69;ReadPosRankSum=0.000;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:35.74:36,0,66:60:7:0.500
chr2	27850204	.	T	.	.	LowGQX	END=27850230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	27850231	.	G	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr2	27850232	.	C	.	.	LowGQX	END=27850259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27850260	.	G	.	.	LowGQX	END=27850478	GT	./.
chr2	27850479	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27850480	.	G	.	.	LowGQX	.	GT	./.
chr2	27850481	.	T	.	.	LowGQX	END=27850490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27850491	.	T	.	.	LowGQX	.	GT	./.
chr2	27850492	.	T	.	.	LowGQX	END=27850496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27850497	.	A	.	.	LowGQX	.	GT	./.
chr2	27850498	.	C	.	.	LowGQX	END=27850499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27850500	.	T	.	.	LowGQX	.	GT	./.
chr2	27850501	.	T	.	.	LowGQX	END=27850507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27850508	.	T	.	.	LowGQX	.	GT	./.
chr2	27850509	.	T	.	.	LowGQX	END=27850511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27850512	.	T	.	.	LowGQX	.	GT	./.
chr2	27850513	.	C	.	.	LowGQX	END=27850560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27850561	.	T	.	.	LowGQX	.	GT	./.
chr2	27850562	.	T	.	.	LowGQX	END=27850563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27850564	.	C	.	.	LowGQX	.	GT	./.
chr2	27850565	.	A	.	.	LowGQX	END=27850629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27850630	.	T	.	.	LowGQX	END=27850784	GT	./.
chr2	27851257	.	T	.	.	LowGQX	END=27851494	GT	./.
chr2	27851495	.	G	.	.	LowGQX	END=27851541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27851542	.	G	.	.	LowGQX	.	GT	./.
chr2	27851543	.	T	.	.	LowGQX	END=27851608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:54
chr2	27851609	.	A	.	.	LowGQX	.	GT	./.
chr2	27851610	.	G	.	.	LowGQX	END=27851628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:54
chr2	27851629	.	A	.	.	LowGQX	END=27851630	GT	./.
chr2	27851883	.	C	.	.	LowGQX	END=27851900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27851901	.	T	.	.	LowGQX	.	GT	./.
chr2	27851902	.	C	.	.	LowGQX	END=27851905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27851906	.	T	.	10.70	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.05:60:0
chr2	27851907	.	G	.	.	LowGQX	END=27851909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	27851910	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27851911	.	G	.	.	LowGQX	END=27851985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27851986	.	T	.	.	LowGQX	END=27852038	GT	./.
chr2	27852226	.	T	.	.	LowGQX	END=27852325	GT	./.
chr2	27852723	.	C	.	.	LowGQX	END=27852725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27852726	.	A	.	.	LowGQX	END=27852760	GT	./.
chr2	27852761	.	A	.	.	LowGQX	END=27852822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27853802	.	G	.	.	LowGQX	END=27853963	GT	./.
chr2	27854685	.	T	.	.	LowGQX	END=27854784	GT	./.
chr2	27855469	.	A	.	.	LowGQX	END=27855568	GT	./.
chr2	27857703	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27857704	.	T	.	.	LowGQX	.	GT	./.
chr2	27857705	.	T	.	.	LowGQX	END=27857740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27857741	.	A	.	.	LowGQX	.	GT	./.
chr2	27857742	.	T	.	.	LowGQX	END=27857802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27858005	.	A	.	.	LowGQX	END=27858104	GT	./.
chr2	27861050	.	A	.	.	LowGQX	END=27861149	GT	./.
chr2	27861750	.	A	.	.	LowGQX	END=27861900	GT	./.
chr2	27862902	.	T	.	.	LowGQX	END=27863001	GT	./.
chr2	27864077	.	A	.	.	LowGQX	END=27864176	GT	./.
chr2	27865292	.	A	.	.	LowGQX	END=27865377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27865378	.	C	.	.	LowGQX	.	GT	./.
chr2	27865379	.	T	.	.	LowGQX	END=27865381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27865382	.	C	.	.	LowGQX	.	GT	./.
chr2	27865383	.	A	.	.	LowGQX	END=27865391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27870701	.	A	.	.	LowGQX	END=27870812	GT	./.
chr2	27872975	.	C	.	.	LowGQX	END=27873074	GT	./.
chr2	27876350	.	T	.	.	LowGQX	END=27876616	GT	./.
chr2	27878230	.	A	.	.	LowGQX	END=27878471	GT	./.
chr2	27880210	.	A	.	.	LowGQX	END=27880538	GT	./.
chr2	27883849	.	A	.	.	LowGQX	END=27884283	GT	./.
chr2	27885003	.	T	.	.	LowGQX	END=27885102	GT	./.
chr2	27886618	.	T	.	.	LowGQX	END=27886906	GT	./.
chr2	27886907	.	C	.	.	LowGQX	END=27886922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27886923	.	A	.	.	LowGQX	.	GT	./.
chr2	27886924	.	A	.	.	LowGQX	END=27887033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27887034	.	C	A	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr2	27887035	.	C	.	.	LowGQX	END=27887268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27887269	.	C	.	.	LowGQX	END=27887446	GT	./.
chr2	27887965	.	A	.	.	LowGQX	END=27888164	GT	./.
chr2	27890133	.	A	.	.	LowGQX	END=27890259	GT	./.
chr2	27891475	.	C	.	.	LowGQX	END=27891574	GT	./.
chr2	27891691	.	G	.	.	LowGQX	END=27891790	GT	./.
chr2	27892113	.	A	.	.	LowGQX	END=27892256	GT	./.
chr2	27898397	.	A	.	.	LowGQX	END=27898561	GT	./.
chr2	27900147	.	A	.	.	LowGQX	END=27900155	GT	./.
chr2	27900156	.	T	.	.	LowGQX	END=27900157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27900158	.	A	.	.	LowGQX	.	GT	./.
chr2	27900159	.	C	.	.	LowGQX	END=27900162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27900163	.	T	.	.	LowGQX	.	GT	./.
chr2	27900164	.	T	.	.	LowGQX	END=27900188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27900189	.	G	.	.	LowGQX	.	GT	./.
chr2	27900190	.	A	.	.	LowGQX	END=27900193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27900194	.	T	.	.	LowGQX	.	GT	./.
chr2	27900195	.	T	.	.	LowGQX	END=27900206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27900207	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	27900208	.	A	.	.	LowGQX	END=27900214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	27900215	.	G	T	4.97	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.49;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:25.53:33,0,26:60:5:0.500
chr2	27900216	.	A	.	.	LowGQX	END=27900246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	27900603	.	A	.	.	LowGQX	END=27900793	GT	./.
chr2	27905113	.	A	.	.	LowGQX	END=27905228	GT	./.
chr2	27907902	.	A	.	.	LowGQX	END=27908146	GT	./.
chr2	27910795	.	T	.	.	LowGQX	END=27910894	GT	./.
chr2	27911495	.	T	.	.	LowGQX	END=27911650	GT	./.
chr2	27916537	.	A	.	.	LowGQX	END=27916636	GT	./.
chr2	27917476	.	T	.	.	LowGQX	END=27917575	GT	./.
chr2	27930447	.	A	.	.	LowGQX	END=27930711	GT	./.
chr2	27930712	.	G	.	.	LowGQX	END=27930825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27930826	.	A	.	.	LowGQX	.	GT	./.
chr2	27930827	.	A	.	.	LowGQX	END=27930858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27930859	.	A	.	.	LowGQX	END=27930869	GT	./.
chr2	27930870	.	C	.	.	LowGQX	END=27930885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27930886	.	T	.	.	LowGQX	.	GT	./.
chr2	27930887	.	A	.	.	LowGQX	END=27930894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27930895	.	T	.	.	LowGQX	.	GT	./.
chr2	27930896	.	A	.	.	LowGQX	END=27930983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27930984	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	27930985	.	C	.	.	LowGQX	END=27931018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27931019	.	C	.	.	LowGQX	END=27931032	GT	./.
chr2	27994546	.	C	.	.	LowGQX	END=27994604	GT	./.
chr2	27994605	.	C	.	.	LowGQX	END=27994641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27994642	.	A	.	.	LowGQX	.	GT	./.
chr2	27994643	.	C	.	.	LowGQX	END=27994682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27994683	.	A	.	.	LowGQX	.	GT	./.
chr2	27994684	.	C	.	.	LowGQX	END=27994705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27995501	.	T	.	.	LowGQX	END=27995533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27995534	.	A	.	.	LowGQX	.	GT	./.
chr2	27995535	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27995536	.	A	.	.	LowGQX	.	GT	./.
chr2	27995537	.	A	.	.	LowGQX	END=27995545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27995546	.	A	.	.	LowGQX	.	GT	./.
chr2	27995547	.	A	.	.	LowGQX	END=27995551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27995552	.	A	.	.	LowGQX	.	GT	./.
chr2	27995553	.	A	.	.	LowGQX	END=27995569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	27995570	.	A	.	.	LowGQX	END=27995600	GT	./.
chr2	27997289	.	A	.	.	LowGQX	END=27997399	GT	./.
chr2	28002298	.	A	.	.	LowGQX	END=28002425	GT	./.
chr2	28004480	.	A	.	.	LowGQX	END=28004657	GT	./.
chr2	28005439	.	G	.	.	LowGQX	END=28005527	GT	./.
chr2	28005528	.	T	.	.	LowGQX	END=28005561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28032830	.	T	.	.	LowGQX	END=28032929	GT	./.
chr2	28050432	.	A	.	.	LowGQX	END=28050445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28050446	.	A	.	.	LowGQX	.	GT	./.
chr2	28050447	.	G	.	.	LowGQX	END=28050470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28050471	.	T	.	.	LowGQX	.	GT	./.
chr2	28050472	.	G	.	.	LowGQX	END=28050489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28050490	.	T	.	.	LowGQX	.	GT	./.
chr2	28050491	.	C	.	.	LowGQX	END=28050596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28050597	.	A	.	.	LowGQX	END=28050624	GT	./.
chr2	28055481	.	C	.	.	LowGQX	END=28055699	GT	./.
chr2	28065932	.	A	.	.	LowGQX	END=28066100	GT	./.
chr2	28069891	.	A	.	.	LowGQX	END=28069990	GT	./.
chr2	28070829	.	T	.	.	LowGQX	END=28070862	GT	./.
chr2	28070863	.	G	.	.	LowGQX	END=28070982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28081304	.	A	.	.	LowGQX	END=28081440	GT	./.
chr2	28084355	.	T	.	.	LowGQX	END=28084362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr2	28084363	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	28084364	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	28084365	.	T	.	.	LowGQX	END=28084369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr2	28084370	.	G	.	36	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.01:60:6
chr2	28084371	.	C	.	.	LowGQX	END=28084410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr2	28084411	.	C	.	36	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.01:60:6
chr2	28084412	.	T	.	.	LowGQX	END=28084416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr2	28084417	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	28084418	.	A	.	.	LowGQX	END=28084422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	28084423	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	28084424	.	A	.	.	LowGQX	END=28084427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	28084428	.	C	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr2	28084429	.	A	.	.	LowGQX	END=28084430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	28084431	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	28084432	.	T	.	.	LowGQX	END=28084454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr2	28093648	.	G	.	.	LowGQX	END=28093757	GT	./.
chr2	28113119	.	C	.	.	LowGQX	END=28113218	GT	./.
chr2	28117400	.	T	.	.	LowGQX	END=28117553	GT	./.
chr2	28152688	.	A	.	.	LowGQX	END=28152787	GT	./.
chr2	28210858	.	A	.	.	LowGQX	END=28210957	GT	./.
chr2	28236191	.	A	.	.	LowGQX	END=28236290	GT	./.
chr2	28248091	.	A	.	.	LowGQX	END=28248147	GT	./.
chr2	28248148	.	A	.	.	LowGQX	END=28248192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28248193	.	A	.	.	LowGQX	.	GT	./.
chr2	28248194	.	G	.	.	LowGQX	END=28248235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28248236	.	G	.	.	LowGQX	.	GT	./.
chr2	28248237	.	C	.	.	LowGQX	END=28248243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28248244	.	A	.	.	LowGQX	.	GT	./.
chr2	28248245	.	T	.	.	LowGQX	END=28248289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28268580	.	T	.	.	LowGQX	END=28268679	GT	./.
chr2	28352136	.	A	.	.	LowGQX	END=28352151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28352152	.	C	.	.	LowGQX	.	GT	./.
chr2	28352153	.	C	.	.	LowGQX	END=28352175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28352176	.	C	.	.	LowGQX	.	GT	./.
chr2	28352177	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28352178	.	C	.	.	LowGQX	.	GT	./.
chr2	28352179	.	T	.	.	LowGQX	END=28352195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28352196	.	C	.	.	LowGQX	END=28352249	GT	./.
chr2	28456010	.	G	.	.	LowGQX	END=28456182	GT	./.
chr2	28460067	.	A	.	.	LowGQX	END=28460170	GT	./.
chr2	28464176	.	G	.	.	LowGQX	END=28464275	GT	./.
chr2	28467639	.	T	.	.	LowGQX	END=28467738	GT	./.
chr2	28521203	.	A	.	.	LowGQX	END=28521360	GT	./.
chr2	28532921	.	A	.	.	LowGQX	END=28533020	GT	./.
chr2	28550139	.	A	.	.	LowGQX	END=28550302	GT	./.
chr2	28561306	.	T	.	.	LowGQX	END=28561405	GT	./.
chr2	28615640	.	G	.	.	LowGQX	END=28615739	GT	./.
chr2	28616529	.	C	.	.	LowGQX	END=28616691	GT	./.
chr2	28626972	.	A	.	.	LowGQX	END=28626978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28626979	.	C	.	.	LowGQX	.	GT	./.
chr2	28626980	.	C	.	.	LowGQX	END=28626981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28626982	.	G	.	.	LowGQX	.	GT	./.
chr2	28626983	.	G	.	.	LowGQX	END=28626990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28626991	.	G	.	.	LowGQX	.	GT	./.
chr2	28626992	.	C	.	.	LowGQX	END=28626996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28626997	.	C	.	.	LowGQX	.	GT	./.
chr2	28626998	.	T	.	.	LowGQX	END=28627012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627013	.	A	.	.	LowGQX	.	GT	./.
chr2	28627014	.	T	.	.	LowGQX	END=28627017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627018	.	C	.	.	LowGQX	END=28627045	GT	./.
chr2	28627046	.	G	.	.	LowGQX	END=28627053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627054	.	G	.	.	LowGQX	.	GT	./.
chr2	28627055	.	T	.	.	LowGQX	END=28627065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627066	.	G	.	.	LowGQX	.	GT	./.
chr2	28627067	.	C	.	.	LowGQX	END=28627069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627070	.	A	.	.	LowGQX	.	GT	./.
chr2	28627071	.	C	.	.	LowGQX	END=28627077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627078	.	C	.	.	LowGQX	.	GT	./.
chr2	28627079	.	A	.	.	LowGQX	END=28627083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627084	.	C	.	.	LowGQX	.	GT	./.
chr2	28627085	.	A	.	.	LowGQX	END=28627086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627087	.	G	.	.	LowGQX	.	GT	./.
chr2	28627088	.	T	.	.	LowGQX	END=28627091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627092	.	A	.	.	LowGQX	.	GT	./.
chr2	28627093	.	C	.	.	LowGQX	END=28627094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627095	.	C	.	.	LowGQX	.	GT	./.
chr2	28627096	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627097	.	T	.	.	LowGQX	.	GT	./.
chr2	28627098	.	A	.	.	LowGQX	END=28627103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627104	.	G	.	.	LowGQX	.	GT	./.
chr2	28627105	.	C	.	.	LowGQX	END=28627110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627111	.	C	.	.	LowGQX	.	GT	./.
chr2	28627112	.	C	.	.	LowGQX	END=28627115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627116	.	A	.	.	LowGQX	.	GT	./.
chr2	28627117	.	C	.	.	LowGQX	END=28627120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627121	.	C	.	.	LowGQX	END=28627122	GT	./.
chr2	28627123	.	C	.	.	LowGQX	END=28627138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627139	.	T	.	.	LowGQX	.	GT	./.
chr2	28627140	.	C	.	.	LowGQX	END=28627145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627146	.	C	.	.	LowGQX	.	GT	./.
chr2	28627147	.	T	.	.	LowGQX	END=28627150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627151	.	C	.	.	LowGQX	.	GT	./.
chr2	28627152	.	A	.	.	LowGQX	END=28627178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627179	.	T	.	.	LowGQX	.	GT	./.
chr2	28627180	.	C	.	.	LowGQX	END=28627194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28627195	.	C	.	.	LowGQX	END=28627227	GT	./.
chr2	28631624	.	A	.	.	LowGQX	END=28631735	GT	./.
chr2	28634745	.	G	.	.	LowGQX	END=28634747	GT	./.
chr2	28634748	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634749	.	G	.	.	LowGQX	.	GT	./.
chr2	28634750	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634751	.	T	.	.	LowGQX	END=28634752	GT	./.
chr2	28634753	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634754	.	C	.	.	LowGQX	END=28634756	GT	./.
chr2	28634757	.	G	.	.	LowGQX	END=28634762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634763	.	T	.	.	LowGQX	.	GT	./.
chr2	28634764	.	G	.	.	LowGQX	END=28634765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634766	.	T	.	.	LowGQX	.	GT	./.
chr2	28634767	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634768	.	T	.	.	LowGQX	.	GT	./.
chr2	28634769	.	C	.	.	LowGQX	END=28634778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634779	.	C	.	.	LowGQX	.	GT	./.
chr2	28634780	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634781	.	T	.	.	LowGQX	.	GT	./.
chr2	28634782	.	C	.	.	LowGQX	END=28634789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634790	.	G	.	.	LowGQX	.	GT	./.
chr2	28634791	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634792	.	G	.	.	LowGQX	.	GT	./.
chr2	28634793	.	G	.	.	LowGQX	END=28634796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634797	.	G	.	.	LowGQX	.	GT	./.
chr2	28634798	.	A	.	.	LowGQX	END=28634799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634800	.	A	.	.	LowGQX	.	GT	./.
chr2	28634801	.	C	.	.	LowGQX	END=28634802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634803	.	G	.	.	LowGQX	.	GT	./.
chr2	28634804	.	A	.	.	LowGQX	END=28634805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634806	.	G	.	.	LowGQX	.	GT	./.
chr2	28634807	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634808	.	G	.	.	LowGQX	END=28634809	GT	./.
chr2	28634810	.	T	.	.	LowGQX	END=28634825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634826	.	A	.	.	LowGQX	.	GT	./.
chr2	28634827	.	G	.	.	LowGQX	END=28634832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634833	.	C	.	.	LowGQX	END=28634834	GT	./.
chr2	28634835	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634836	.	A	.	.	LowGQX	.	GT	./.
chr2	28634837	.	A	.	.	LowGQX	END=28634838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634839	.	G	.	.	LowGQX	.	GT	./.
chr2	28634840	.	A	.	.	LowGQX	END=28634843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634844	.	T	.	.	LowGQX	.	GT	./.
chr2	28634845	.	G	.	.	LowGQX	END=28634855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634856	.	G	.	.	LowGQX	.	GT	./.
chr2	28634857	.	A	.	.	LowGQX	END=28634865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634866	.	G	.	.	LowGQX	.	GT	./.
chr2	28634867	.	A	.	.	LowGQX	END=28634871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634872	.	C	.	.	LowGQX	.	GT	./.
chr2	28634873	.	T	.	.	LowGQX	END=28634874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634875	.	G	.	.	LowGQX	.	GT	./.
chr2	28634876	.	A	.	.	LowGQX	END=28634885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634886	.	G	.	.	LowGQX	.	GT	./.
chr2	28634887	.	G	.	.	LowGQX	END=28634898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28634899	.	C	.	.	LowGQX	END=28635317	GT	./.
chr2	28718900	.	T	.	.	LowGQX	END=28718944	GT	./.
chr2	28718945	.	C	.	.	LowGQX	END=28719059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28739656	.	T	.	.	LowGQX	END=28739733	GT	./.
chr2	28739734	.	G	.	.	LowGQX	END=28739755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28741317	.	T	.	.	LowGQX	END=28741416	GT	./.
chr2	28742552	.	A	.	.	LowGQX	END=28742651	GT	./.
chr2	28748105	.	T	.	.	LowGQX	END=28748204	GT	./.
chr2	28748743	.	G	.	.	LowGQX	END=28748842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28752180	.	T	.	.	LowGQX	END=28752218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	28752219	.	G	T	9.30	LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=-0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr2	28752220	.	T	.	.	LowGQX	END=28752279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	28752571	.	C	.	.	LowGQX	END=28752600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28752601	.	G	.	.	LowGQX	.	GT	./.
chr2	28752602	.	T	.	.	LowGQX	END=28752616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28752617	.	G	.	.	LowGQX	.	GT	./.
chr2	28752618	.	A	.	.	LowGQX	END=28752619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28752620	.	C	.	.	LowGQX	END=28752670	GT	./.
chr2	28754969	.	A	.	.	LowGQX	END=28755068	GT	./.
chr2	28761092	.	T	.	.	LowGQX	END=28761101	GT	./.
chr2	28761102	.	G	.	.	LowGQX	END=28761154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28761155	.	A	.	.	LowGQX	.	GT	./.
chr2	28761156	.	C	.	.	LowGQX	END=28761176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28761177	.	C	.	.	LowGQX	.	GT	./.
chr2	28761178	.	T	.	.	LowGQX	END=28761218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28761219	.	A	.	.	LowGQX	.	GT	./.
chr2	28761220	.	T	.	.	LowGQX	END=28761251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	28761956	.	G	.	.	LowGQX	END=28762055	GT	./.
chr2	28763221	.	T	.	.	LowGQX	END=28763255	GT	./.
chr2	28763256	.	G	.	.	LowGQX	END=28763320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28764572	.	A	.	.	LowGQX	END=28764666	GT	./.
chr2	28764667	.	T	.	.	LowGQX	END=28764680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28766058	.	T	.	.	LowGQX	END=28766157	GT	./.
chr2	28771350	.	C	.	.	LowGQX	END=28771449	GT	./.
chr2	28771713	.	A	.	.	LowGQX	END=28771812	GT	./.
chr2	28772865	.	C	.	.	LowGQX	.	GT	./.
chr2	28772866	.	T	.	.	LowGQX	END=28772868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28772869	.	C	.	.	LowGQX	END=28772870	GT	./.
chr2	28772871	.	C	.	.	LowGQX	END=28772874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28772875	.	A	.	.	LowGQX	.	GT	./.
chr2	28772876	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28772877	.	G	.	.	LowGQX	.	GT	./.
chr2	28772878	.	A	.	.	LowGQX	END=28772881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28772882	.	C	.	.	LowGQX	END=28772883	GT	./.
chr2	28772884	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28772885	.	C	.	.	LowGQX	.	GT	./.
chr2	28772886	.	T	.	.	LowGQX	END=28772888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28772889	.	C	.	.	LowGQX	.	GT	./.
chr2	28772890	.	T	.	.	LowGQX	END=28772893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28772894	.	C	.	.	LowGQX	END=28772895	GT	./.
chr2	28772896	.	G	.	.	LowGQX	END=28772897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28772898	.	T	.	.	LowGQX	END=28772899	GT	./.
chr2	28772900	.	C	.	.	LowGQX	END=28772902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28772903	.	A	.	.	LowGQX	END=28772907	GT	./.
chr2	28772908	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28772909	.	C	.	.	LowGQX	.	GT	./.
chr2	28772910	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28772911	.	A	.	.	LowGQX	.	GT	./.
chr2	28772912	.	C	.	.	LowGQX	END=28772914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28772915	.	C	.	.	LowGQX	END=28772916	GT	./.
chr2	28772917	.	T	.	.	LowGQX	END=28772920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28772921	.	C	.	.	LowGQX	.	GT	./.
chr2	28772922	.	A	.	.	LowGQX	END=28772923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28772924	.	A	.	.	LowGQX	.	GT	./.
chr2	28772925	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28772926	.	T	.	.	LowGQX	END=28772929	GT	./.
chr2	28772930	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28772931	.	A	.	.	LowGQX	END=28772932	GT	./.
chr2	28772933	.	A	.	.	LowGQX	END=28772935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28772936	.	C	.	.	LowGQX	.	GT	./.
chr2	28772937	.	C	.	.	LowGQX	END=28772945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28772946	.	C	.	.	LowGQX	END=28772964	GT	./.
chr2	28775777	.	C	.	.	LowGQX	END=28775876	GT	./.
chr2	28785888	.	A	.	.	LowGQX	END=28785987	GT	./.
chr2	28788134	.	T	.	.	LowGQX	END=28788233	GT	./.
chr2	28789635	.	C	.	.	LowGQX	END=28789734	GT	./.
chr2	28796062	.	A	.	.	LowGQX	END=28796174	GT	./.
chr2	28800890	.	C	.	.	LowGQX	END=28800995	GT	./.
chr2	28800996	.	A	.	.	LowGQX	END=28801101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28802485	.	T	.	.	LowGQX	END=28802584	GT	./.
chr2	28804918	.	A	.	.	LowGQX	END=28805017	GT	./.
chr2	28805270	.	A	.	.	LowGQX	END=28805374	GT	./.
chr2	28808619	.	G	.	.	LowGQX	END=28808635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28808636	.	G	.	.	LowGQX	END=28808718	GT	./.
chr2	28812315	.	A	.	.	LowGQX	END=28812343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28812344	.	G	.	.	LowGQX	.	GT	./.
chr2	28812345	.	G	.	.	LowGQX	END=28812423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28812540	.	A	.	.	LowGQX	END=28812639	GT	./.
chr2	28812858	.	G	.	.	LowGQX	END=28812957	GT	./.
chr2	28813970	.	C	.	.	LowGQX	END=28814069	GT	./.
chr2	28814548	.	A	.	.	LowGQX	END=28814647	GT	./.
chr2	28815465	.	G	.	.	LowGQX	END=28815624	GT	./.
chr2	28816535	.	T	.	.	LowGQX	END=28816634	GT	./.
chr2	28816830	.	A	.	.	LowGQX	.	GT	./.
chr2	28816831	.	T	.	.	LowGQX	END=28816832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28816833	.	G	.	.	LowGQX	END=28816835	GT	./.
chr2	28816836	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28816837	.	A	.	.	LowGQX	END=28816839	GT	./.
chr2	28816840	.	G	.	.	LowGQX	END=28816850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28816851	.	A	.	.	LowGQX	.	GT	./.
chr2	28816852	.	G	.	.	LowGQX	END=28816854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28816855	.	T	.	.	LowGQX	END=28816857	GT	./.
chr2	28816858	.	T	.	.	LowGQX	END=28816859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28816860	.	A	.	.	LowGQX	.	GT	./.
chr2	28816861	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28816862	.	C	.	.	LowGQX	END=28816863	GT	./.
chr2	28816864	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28816865	.	A	.	.	LowGQX	.	GT	./.
chr2	28816866	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28816867	.	T	.	.	LowGQX	.	GT	./.
chr2	28816868	.	C	.	.	LowGQX	END=28816873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28816874	.	T	.	.	LowGQX	END=28816876	GT	./.
chr2	28816877	.	G	.	.	LowGQX	END=28816880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28816881	.	A	.	.	LowGQX	END=28816882	GT	./.
chr2	28816883	.	C	.	.	LowGQX	END=28816884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28816885	.	A	.	.	LowGQX	END=28816888	GT	./.
chr2	28816889	.	G	.	.	LowGQX	END=28816899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28816900	.	A	.	.	LowGQX	END=28816902	GT	./.
chr2	28816903	.	A	.	.	LowGQX	END=28816907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28816908	.	A	.	.	LowGQX	.	GT	./.
chr2	28816909	.	C	.	.	LowGQX	END=28816911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28816912	.	A	.	.	LowGQX	END=28816929	GT	./.
chr2	28820784	.	G	.	.	LowGQX	END=28820887	GT	./.
chr2	28820888	.	T	.	.	LowGQX	END=28820943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28821517	.	A	.	.	LowGQX	END=28821555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28821556	.	C	.	.	LowGQX	.	GT	./.
chr2	28821557	.	G	.	.	LowGQX	END=28821629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28823652	.	G	.	.	LowGQX	END=28823751	GT	./.
chr2	28824110	.	T	.	.	LowGQX	END=28824128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	28824129	.	T	.	.	LowGQX	END=28824209	GT	./.
chr2	28824694	.	A	.	.	LowGQX	END=28824848	GT	./.
chr2	28825686	.	A	.	.	LowGQX	END=28825790	GT	./.
chr2	28826824	.	T	.	.	LowGQX	END=28826923	GT	./.
chr2	28827520	.	A	.	.	LowGQX	END=28827628	GT	./.
chr2	28828718	.	A	.	.	LowGQX	END=28828817	GT	./.
chr2	28829349	.	T	.	.	LowGQX	END=28829355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28829356	.	T	.	.	LowGQX	END=28829448	GT	./.
chr2	28836881	.	G	.	.	LowGQX	END=28836980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	28840575	.	T	.	.	LowGQX	END=28840674	GT	./.
chr2	28841188	.	T	.	.	LowGQX	END=28841287	GT	./.
chr2	28843116	.	T	.	.	LowGQX	END=28843215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28843439	.	T	.	.	LowGQX	END=28843538	GT	./.
chr2	28843693	.	A	.	.	LowGQX	END=28843714	GT	./.
chr2	28843715	.	G	.	.	LowGQX	END=28843847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28847900	.	C	.	.	LowGQX	END=28847915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28847916	.	C	.	.	LowGQX	END=28847999	GT	./.
chr2	28849293	.	A	.	.	LowGQX	END=28849415	GT	./.
chr2	28851413	.	C	.	.	LowGQX	END=28851512	GT	./.
chr2	28851957	.	G	.	.	LowGQX	END=28852030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28852031	.	A	.	.	LowGQX	.	GT	./.
chr2	28852032	.	A	.	.	LowGQX	END=28852045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28852046	.	C	.	.	LowGQX	END=28852047	GT	./.
chr2	28852048	.	G	.	.	LowGQX	END=28852056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28853443	.	T	.	.	LowGQX	END=28853542	GT	./.
chr2	28854901	.	A	.	.	LowGQX	END=28855009	GT	./.
chr2	28855809	.	A	.	.	LowGQX	END=28855900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28855901	.	A	.	.	LowGQX	END=28855908	GT	./.
chr2	28863721	.	G	.	.	LowGQX	END=28863880	GT	./.
chr2	28865722	.	A	.	.	LowGQX	END=28865728	GT	./.
chr2	28865729	.	C	.	.	LowGQX	END=28865929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28974561	.	C	.	.	LowGQX	.	GT	./.
chr2	28974562	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	28974563	.	A	.	.	LowGQX	.	GT	./.
chr2	28974564	.	G	.	.	LowGQX	END=28974566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28974567	.	G	.	.	LowGQX	END=28974568	GT	./.
chr2	28974569	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28974570	.	G	.	.	LowGQX	.	GT	./.
chr2	28974571	.	A	.	.	LowGQX	END=28974572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28974573	.	G	.	.	LowGQX	.	GT	./.
chr2	28974574	.	G	.	.	LowGQX	END=28974578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28974579	.	C	.	.	LowGQX	END=28974580	GT	./.
chr2	28974581	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28974582	.	G	.	.	LowGQX	.	GT	./.
chr2	28974583	.	G	.	.	LowGQX	END=28974584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28974585	.	G	.	.	LowGQX	.	GT	./.
chr2	28974586	.	G	.	.	LowGQX	END=28974591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28974592	.	G	.	.	LowGQX	.	GT	./.
chr2	28974593	.	C	.	.	LowGQX	END=28974594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28974595	.	C	.	.	LowGQX	.	GT	./.
chr2	28974596	.	C	.	.	LowGQX	END=28974619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28974620	.	T	.	.	LowGQX	.	GT	./.
chr2	28974621	.	G	.	.	LowGQX	END=28974623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28974624	.	G	.	.	LowGQX	.	GT	./.
chr2	28974625	.	C	.	.	LowGQX	END=28974626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28974627	.	G	.	.	LowGQX	.	GT	./.
chr2	28974628	.	C	.	.	LowGQX	END=28974631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28974632	.	G	.	.	LowGQX	.	GT	./.
chr2	28974633	.	C	.	.	LowGQX	END=28974644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28974645	.	G	.	.	LowGQX	.	GT	./.
chr2	28974646	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28974647	.	G	.	.	LowGQX	.	GT	./.
chr2	28974648	.	G	.	.	LowGQX	END=28974660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28974661	.	T	.	.	LowGQX	END=28974720	GT	./.
chr2	28974907	.	A	.	.	LowGQX	END=28974917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28974918	.	A	.	.	LowGQX	.	GT	./.
chr2	28974919	.	G	.	.	LowGQX	END=28974922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28974923	.	T	.	.	LowGQX	.	GT	./.
chr2	28974924	.	C	.	.	LowGQX	END=28974976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28974977	.	T	.	.	LowGQX	.	GT	./.
chr2	28974978	.	C	.	.	LowGQX	END=28975018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28975019	.	G	.	.	LowGQX	.	GT	./.
chr2	28975020	.	C	.	.	LowGQX	END=28975028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	28975029	.	C	.	.	LowGQX	END=28975034	GT	./.
chr2	28975035	.	G	.	.	LowGQX	END=28975066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	28999715	.	A	.	.	LowGQX	END=28999850	GT	./.
chr2	29001213	.	T	.	.	LowGQX	END=29001312	GT	./.
chr2	29001673	.	A	.	.	LowGQX	END=29001690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29001691	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	29001692	.	T	.	.	LowGQX	END=29001700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29001701	.	T	.	.	LowGQX	END=29001907	GT	./.
chr2	29004532	.	T	.	.	LowGQX	END=29004571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29004572	.	T	.	.	LowGQX	END=29004832	GT	./.
chr2	29004833	.	G	.	.	LowGQX	END=29004858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29004859	.	A	.	.	LowGQX	.	GT	./.
chr2	29004860	.	A	.	.	LowGQX	END=29004871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29006759	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29006760	.	T	.	.	LowGQX	.	GT	./.
chr2	29006761	.	T	.	.	LowGQX	END=29006764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29006765	.	A	.	.	LowGQX	.	GT	./.
chr2	29006766	.	T	.	.	LowGQX	END=29006778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29006779	.	C	.	.	LowGQX	.	GT	./.
chr2	29006780	.	A	.	.	LowGQX	END=29006786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29006787	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	29006788	.	T	.	.	LowGQX	END=29006812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29006813	.	A	.	.	LowGQX	.	GT	./.
chr2	29006814	.	A	.	.	LowGQX	END=29006820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29006821	.	G	.	.	LowGQX	.	GT	./.
chr2	29006822	.	A	.	.	LowGQX	END=29006828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29006829	.	G	.	.	LowGQX	.	GT	./.
chr2	29006830	.	A	.	.	LowGQX	END=29006857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29006858	.	G	.	.	LowGQX	.	GT	./.
chr2	29011482	.	T	.	.	LowGQX	END=29011615	GT	./.
chr2	29011616	.	G	.	.	LowGQX	END=29011669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29011670	.	C	.	.	LowGQX	.	GT	./.
chr2	29011671	.	A	.	.	LowGQX	END=29011677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29016727	.	A	.	.	LowGQX	END=29016865	GT	./.
chr2	29022063	.	A	.	.	LowGQX	END=29022171	GT	./.
chr2	29038879	.	A	.	.	LowGQX	END=29039117	GT	./.
chr2	29041894	.	A	.	.	LowGQX	END=29041939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29041940	.	T	.	.	LowGQX	END=29041978	GT	./.
chr2	29041979	.	T	.	.	LowGQX	END=29041990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29041991	.	T	.	.	LowGQX	.	GT	./.
chr2	29041992	.	A	.	.	LowGQX	END=29041993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29045185	.	T	.	.	LowGQX	END=29045279	GT	./.
chr2	29045280	.	A	.	.	LowGQX	END=29045322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29045323	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	29045324	.	A	.	.	LowGQX	END=29045338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29052012	.	A	.	.	LowGQX	END=29052027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29052028	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	29052029	.	A	.	.	LowGQX	END=29052032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29052033	.	G	.	.	LowGQX	.	GT	./.
chr2	29052034	.	A	.	.	LowGQX	END=29052046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29052047	.	A	.	.	LowGQX	END=29052211	GT	./.
chr2	29063025	.	C	.	.	LowGQX	END=29063354	GT	./.
chr2	29072712	.	T	.	.	LowGQX	END=29072863	GT	./.
chr2	29073037	.	T	.	.	LowGQX	END=29073136	GT	./.
chr2	29073183	.	A	.	.	LowGQX	END=29073282	GT	./.
chr2	29073936	.	A	.	.	LowGQX	END=29073957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29073958	.	A	.	.	LowGQX	END=29074166	GT	./.
chr2	29075270	.	T	.	.	LowGQX	END=29075369	GT	./.
chr2	29083982	.	A	.	.	LowGQX	END=29084176	GT	./.
chr2	29087881	.	A	.	.	LowGQX	END=29087987	GT	./.
chr2	29092443	.	A	.	.	LowGQX	END=29092519	GT	./.
chr2	29092520	.	C	.	.	LowGQX	END=29092693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29092694	.	G	.	.	LowGQX	END=29093145	GT	./.
chr2	29117564	.	A	.	.	LowGQX	END=29117789	GT	./.
chr2	29124812	.	T	.	.	LowGQX	END=29124990	GT	./.
chr2	29129325	.	G	.	.	LowGQX	END=29129420	GT	./.
chr2	29129421	.	G	.	.	LowGQX	END=29129447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29135455	.	G	.	.	LowGQX	END=29135576	GT	./.
chr2	29136523	.	A	.	.	LowGQX	END=29136622	GT	./.
chr2	29136934	.	G	.	.	LowGQX	END=29137074	GT	./.
chr2	29140708	.	G	.	.	LowGQX	END=29140861	GT	./.
chr2	29145767	.	G	.	.	LowGQX	END=29145866	GT	./.
chr2	29147847	.	G	.	.	LowGQX	END=29147856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29147857	.	A	.	.	LowGQX	.	GT	./.
chr2	29147858	.	A	.	.	LowGQX	END=29147873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29147874	.	A	.	.	LowGQX	.	GT	./.
chr2	29147875	.	C	.	.	LowGQX	END=29147879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29147880	.	C	.	.	LowGQX	.	GT	./.
chr2	29147881	.	A	.	.	LowGQX	END=29147889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29147890	.	A	.	.	LowGQX	END=29147891	GT	./.
chr2	29147892	.	C	.	.	LowGQX	END=29147897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29147898	.	C	.	.	LowGQX	END=29148005	GT	./.
chr2	29148006	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29148007	.	T	.	.	LowGQX	.	GT	./.
chr2	29148008	.	A	.	.	LowGQX	END=29148009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29148010	.	T	.	.	LowGQX	.	GT	./.
chr2	29148011	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29148012	.	A	.	.	LowGQX	.	GT	./.
chr2	29148013	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29148014	.	C	.	.	LowGQX	END=29148015	GT	./.
chr2	29148016	.	A	.	.	LowGQX	END=29148019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29149327	.	T	.	.	LowGQX	END=29149426	GT	./.
chr2	29149922	.	A	.	.	LowGQX	END=29150021	GT	./.
chr2	29150434	.	G	.	.	LowGQX	END=29150566	GT	./.
chr2	29152444	.	G	.	.	LowGQX	END=29152474	GT	./.
chr2	29152475	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29152476	.	A	.	.	LowGQX	.	GT	./.
chr2	29152477	.	T	.	.	LowGQX	END=29152481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29152482	.	A	.	.	LowGQX	.	GT	./.
chr2	29152483	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29152484	.	A	.	.	LowGQX	.	GT	./.
chr2	29152485	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29152486	.	A	.	.	LowGQX	.	GT	./.
chr2	29152487	.	C	.	.	LowGQX	END=29152489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29152490	.	A	.	.	LowGQX	END=29152491	GT	./.
chr2	29152492	.	A	.	.	LowGQX	END=29152497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29152498	.	A	.	.	LowGQX	.	GT	./.
chr2	29152499	.	A	.	.	LowGQX	END=29152576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29152920	.	G	.	.	LowGQX	END=29153019	GT	./.
chr2	29158326	.	T	.	.	LowGQX	END=29158479	GT	./.
chr2	29159697	.	T	.	.	LowGQX	END=29159853	GT	./.
chr2	29160779	.	T	.	.	LowGQX	END=29160836	GT	./.
chr2	29160837	.	G	.	.	LowGQX	END=29160861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29160862	.	T	.	.	LowGQX	.	GT	./.
chr2	29160863	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29160864	.	A	.	.	LowGQX	.	GT	./.
chr2	29160865	.	G	.	.	LowGQX	END=29160867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29160868	.	T	.	.	LowGQX	.	GT	./.
chr2	29160869	.	T	.	.	LowGQX	END=29160875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29160876	.	T	.	.	LowGQX	END=29160877	GT	./.
chr2	29160878	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29164326	.	G	.	.	LowGQX	END=29164365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	29164366	.	T	.	.	LowGQX	END=29164440	GT	./.
chr2	29165163	.	T	.	.	LowGQX	END=29165203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	29165204	.	A	.	.	LowGQX	END=29165262	GT	./.
chr2	29169291	.	G	.	.	LowGQX	END=29169390	GT	./.
chr2	29169465	.	G	.	.	LowGQX	END=29169645	GT	./.
chr2	29217665	.	C	.	.	LowGQX	END=29217764	GT	./.
chr2	29221008	.	G	.	.	LowGQX	END=29221009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29221010	.	C	.	.	LowGQX	END=29221119	GT	./.
chr2	29222046	.	G	.	.	LowGQX	END=29222173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29222174	.	T	.	.	LowGQX	.	GT	./.
chr2	29222175	.	C	.	.	LowGQX	END=29222322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29222323	.	C	.	.	LowGQX	END=29222334	GT	./.
chr2	29225401	.	G	.	.	LowGQX	END=29225613	GT	./.
chr2	29226357	.	G	.	.	LowGQX	END=29226548	GT	./.
chr2	29234240	.	C	.	.	LowGQX	END=29234393	GT	./.
chr2	29237260	.	G	.	.	LowGQX	END=29237427	GT	./.
chr2	29240019	.	G	.	.	LowGQX	END=29240105	GT	./.
chr2	29240106	.	G	.	.	LowGQX	END=29240137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29240138	.	G	.	.	LowGQX	.	GT	./.
chr2	29240139	.	C	.	.	LowGQX	END=29240141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29240142	.	G	.	.	LowGQX	.	GT	./.
chr2	29240143	.	G	.	.	LowGQX	END=29240153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29240154	.	A	.	.	LowGQX	.	GT	./.
chr2	29240155	.	G	.	.	LowGQX	END=29240158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29240159	.	T	.	.	LowGQX	.	GT	./.
chr2	29240160	.	C	.	.	LowGQX	END=29240165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29240166	.	G	.	.	LowGQX	.	GT	./.
chr2	29240167	.	G	.	.	LowGQX	END=29240170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29240657	.	G	.	.	LowGQX	END=29240742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29240743	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	29240744	.	A	.	.	LowGQX	END=29240758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29240759	.	C	.	.	LowGQX	.	GT	./.
chr2	29240760	.	G	.	.	LowGQX	END=29240776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29240777	.	A	.	.	LowGQX	.	GT	./.
chr2	29240778	.	T	.	.	LowGQX	END=29240779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29240780	.	C	.	.	LowGQX	.	GT	./.
chr2	29240781	.	C	.	.	LowGQX	END=29240786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29240787	.	G	.	.	LowGQX	.	GT	./.
chr2	29240788	.	C	.	.	LowGQX	END=29240789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29240790	.	G	.	.	LowGQX	.	GT	./.
chr2	29240791	.	G	.	.	LowGQX	END=29240795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29240796	.	A	.	.	LowGQX	.	GT	./.
chr2	29240797	.	G	.	.	LowGQX	END=29240799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29240800	.	C	.	.	LowGQX	END=29240822	GT	./.
chr2	29245023	.	G	.	.	LowGQX	END=29245046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29245047	.	A	.	.	LowGQX	.	GT	./.
chr2	29245048	.	C	.	.	LowGQX	END=29245137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29245138	.	T	.	.	LowGQX	.	GT	./.
chr2	29245139	.	G	.	.	LowGQX	END=29245174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29245951	.	G	.	.	LowGQX	END=29245952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	29245953	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	29245954	.	A	.	.	LowGQX	END=29245991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	29245992	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	29245993	.	C	.	.	LowGQX	END=29245994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	29245995	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	29245996	.	C	.	.	LowGQX	END=29246008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	29246009	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	29246010	.	G	.	.	LowGQX	END=29246011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	29246012	.	C	.	.	LowGQX	.	GT	./.
chr2	29246013	.	C	.	.	LowGQX	END=29246016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	29246017	.	C	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr2	29246018	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr2	29246019	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	29246020	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	29246021	.	G	.	.	LowGQX	END=29246026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	29246027	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	29246028	.	C	.	.	LowGQX	END=29246033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	29246034	.	G	.	.	LowGQX	.	GT	./.
chr2	29246035	.	T	.	.	LowGQX	END=29246040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	29246041	.	T	.	.	LowGQX	END=29246057	GT	./.
chr2	29247004	.	G	.	.	LowGQX	END=29247014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29247015	.	T	.	.	LowGQX	.	GT	./.
chr2	29247016	.	G	.	.	LowGQX	END=29247139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29247140	.	A	.	.	LowGQX	.	GT	./.
chr2	29247141	.	A	.	.	LowGQX	END=29247156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29247157	.	A	.	.	LowGQX	.	GT	./.
chr2	29247158	.	G	.	.	LowGQX	END=29247176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29247177	.	G	.	.	LowGQX	.	GT	./.
chr2	29247178	.	G	.	.	LowGQX	END=29247240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29249718	.	G	.	.	LowGQX	END=29249877	GT	./.
chr2	29255799	.	G	.	.	LowGQX	END=29255917	GT	./.
chr2	29256311	.	A	.	.	LowGQX	END=29256429	GT	./.
chr2	29258319	.	T	.	.	LowGQX	END=29258522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29259406	.	G	.	.	LowGQX	END=29259623	GT	./.
chr2	29268189	.	G	.	.	LowGQX	END=29268361	GT	./.
chr2	29268362	.	T	.	.	LowGQX	END=29268367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29268368	.	A	.	.	LowGQX	.	GT	./.
chr2	29268369	.	C	.	.	LowGQX	END=29268372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29268373	.	A	.	.	LowGQX	.	GT	./.
chr2	29268374	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29268375	.	A	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	29268376	.	T	.	.	LowGQX	END=29268380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29268381	.	C	.	.	LowGQX	.	GT	./.
chr2	29268382	.	C	.	.	LowGQX	END=29268404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29274621	.	G	.	.	LowGQX	END=29274959	GT	./.
chr2	29287684	.	A	.	.	PASS	END=29287702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	29287703	.	G	.	.	PASS	END=29287711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	29287712	.	A	.	.	PASS	END=29287732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	29287733	.	T	.	.	PASS	END=29287779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	29287780	.	G	.	.	PASS	END=29287900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr2	29287901	.	T	.	.	PASS	END=29287929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr2	29287930	.	G	.	.	PASS	END=29287967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	29287968	.	T	.	.	PASS	END=29287983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	29287984	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:83:99:60
chr2	29293409	.	T	.	.	PASS	END=29293412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr2	29293413	.	C	.	.	PASS	END=29293430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr2	29293431	.	A	.	.	PASS	END=29293441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	29293442	.	C	.	.	PASS	END=29293445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	29293446	.	A	G	310.82	PASS	BaseQRankSum=0.409;DP=58;Dels=0.00;FS=3.437;HRun=2;HaplotypeScore=7.5754;MQ=60;MQ0=0;MQRankSum=-0.478;QD=5.36;ReadPosRankSum=0.809;SB=-108.65	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,16:58:99:341,0,1216:60:99:0.276
chr2	29293447	.	G	.	.	PASS	END=29293451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	29293452	.	C	.	.	PASS	END=29293489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	29293490	.	G	.	.	PASS	END=29293507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	29293508	.	G	.	.	PASS	END=29293565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr2	29293566	.	G	.	.	PASS	END=29293666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr2	29293667	.	C	.	.	PASS	END=29293778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr2	29293779	.	C	.	.	PASS	END=29293804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	29293805	.	C	.	.	PASS	END=29293819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	29293820	.	C	.	.	PASS	END=29293844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	29293845	.	G	.	.	PASS	END=29293858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	29293859	.	G	.	.	PASS	END=29293880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr2	29293881	.	G	.	.	PASS	END=29293899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr2	29293900	.	C	.	.	PASS	END=29293901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr2	29293902	.	G	.	.	PASS	END=29293904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr2	29293905	.	T	.	.	PASS	END=29293906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr2	29293907	.	G	.	.	PASS	END=29293910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:59
chr2	29293911	.	G	.	.	PASS	END=29293913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:59
chr2	29293914	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:0:59
chr2	29293915	.	G	.	.	PASS	END=29293937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:59
chr2	29293938	.	C	.	.	PASS	END=29293940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	29293941	.	T	.	.	PASS	END=29293948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr2	29293949	.	G	.	.	PASS	END=29293951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	29293952	.	G	.	.	PASS	END=29293954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:59
chr2	29293955	.	T	.	.	PASS	END=29293956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:59
chr2	29293957	.	G	.	.	PASS	END=29293958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:59
chr2	29293959	.	G	.	.	PASS	END=29293963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:59
chr2	29293964	.	T	.	.	PASS	END=29293968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:59
chr2	29293969	.	C	.	.	PASS	END=29293970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:45:59
chr2	29293971	.	G	.	.	PASS	END=29293975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	29293976	.	G	.	.	PASS	END=29293977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:81:60
chr2	29293978	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:48:60
chr2	29293979	.	G	.	.	PASS	END=29293985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	29293986	.	T	.	.	PASS	END=29293988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr2	29293989	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:84:60
chr2	29293990	.	C	.	.	PASS	END=29293991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr2	29293992	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:96:60
chr2	29293993	.	C	.	.	PASS	END=29293996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr2	29293997	.	G	.	.	PASS	END=29294000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr2	29294001	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:66:60
chr2	29294002	.	G	.	.	PASS	END=29294006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr2	29294007	.	G	.	.	PASS	END=29294014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr2	29294015	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:63:60
chr2	29294016	.	C	.	.	PASS	END=29294044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	29294045	.	G	.	.	PASS	END=29294059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	29294060	.	G	.	.	PASS	END=29294079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	29294080	.	G	.	.	PASS	END=29294113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	29294114	.	G	.	.	PASS	END=29294135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	29294136	.	T	.	.	PASS	END=29294183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	29294184	.	G	.	.	PASS	END=29294252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr2	29294253	.	C	T	1826.36	PASS	BaseQRankSum=1.159;DP=180;Dels=0.00;FS=2.126;HRun=0;HaplotypeScore=26.7541;MQ=60;MQ0=0;MQRankSum=-0.671;QD=10.15;ReadPosRankSum=0.995;SB=-595.52	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:104,75:180:99:1856,0,2765:60:99:0.419
chr2	29294254	.	G	.	.	PASS	END=29294421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	29294422	.	C	.	.	PASS	END=29294695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	29294696	.	G	.	.	PASS	END=29294870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr2	29294871	.	C	.	.	PASS	END=29294893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	29294894	.	C	.	.	PASS	END=29294955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr2	29294956	.	G	.	.	PASS	END=29295005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:301:99:60
chr2	29295006	.	A	.	.	PASS	END=29295229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:354:99:60
chr2	29295230	.	C	.	.	PASS	END=29295330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:289:99:60
chr2	29295331	.	A	.	.	PASS	END=29295481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr2	29295482	.	C	.	.	PASS	END=29295528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:326:99:60
chr2	29295529	.	C	.	.	PASS	END=29295695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:343:99:60
chr2	29295696	.	C	.	.	PASS	END=29295775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:260:99:60
chr2	29295776	.	C	.	.	PASS	END=29295835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr2	29295836	.	C	.	.	PASS	END=29295903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	29295904	.	T	.	.	PASS	END=29295964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	29295965	.	G	.	.	PASS	END=29296115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	29296116	.	G	.	.	PASS	END=29296174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	29296175	.	T	.	.	PASS	END=29296259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	29296260	.	C	.	.	PASS	END=29296341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	29296342	.	C	.	.	PASS	END=29296552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr2	29296553	.	T	.	.	PASS	END=29296561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr2	29296562	.	G	.	.	PASS	END=29296617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:296:99:60
chr2	29296618	.	A	.	.	PASS	END=29296648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:385:99:60
chr2	29296649	.	C	.	.	PASS	END=29296803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:442:99:60
chr2	29296804	.	G	.	.	PASS	END=29296900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:368:99:60
chr2	29296901	.	T	.	.	PASS	END=29296933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:269:99:60
chr2	29296934	.	C	.	.	PASS	END=29296944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr2	29296945	.	C	.	.	PASS	END=29297006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	29297007	.	T	.	.	PASS	END=29297032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	29297033	.	C	.	.	PASS	END=29297095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	29297096	.	A	.	.	PASS	END=29297105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	29297106	.	T	.	.	PASS	END=29297115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	29297116	.	T	.	.	PASS	END=29297122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr2	29297123	.	C	.	.	PASS	END=29297124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	29297125	.	C	.	.	PASS	END=29297139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	29297140	.	T	.	.	PASS	END=29297142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	29297143	.	T	.	.	PASS	END=29297145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	29297146	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	29297147	.	C	.	.	PASS	END=29297153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	29297154	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:2:60
chr2	29297155	.	C	.	.	LowGQX	END=29297156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	29297157	.	C	.	.	PASS	END=29297163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	29297164	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	29297165	.	A	.	.	PASS	END=29297166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	29297167	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr2	29297168	.	T	.	.	PASS	END=29297169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	29297170	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	29297171	.	C	.	.	PASS	END=29297178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	29344251	.	G	.	.	LowGQX	END=29344430	GT	./.
chr2	29352847	.	C	.	.	LowGQX	END=29352946	GT	./.
chr2	29353664	.	A	.	.	LowGQX	END=29353763	GT	./.
chr2	29354082	.	G	.	.	LowGQX	END=29354265	GT	./.
chr2	29355015	.	C	.	.	LowGQX	END=29355114	GT	./.
chr2	29356519	.	A	.	.	LowGQX	END=29356532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29356533	.	C	.	.	LowGQX	.	GT	./.
chr2	29356534	.	A	.	.	LowGQX	END=29356541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29356542	.	A	.	.	LowGQX	.	GT	./.
chr2	29356543	.	A	.	.	LowGQX	END=29356548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29356549	.	A	.	.	LowGQX	.	GT	./.
chr2	29356550	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29356551	.	C	.	.	LowGQX	.	GT	./.
chr2	29356552	.	T	.	.	LowGQX	END=29356556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29356557	.	T	.	.	LowGQX	.	GT	./.
chr2	29356558	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29356559	.	A	.	.	LowGQX	END=29356614	GT	./.
chr2	29356615	.	G	.	.	LowGQX	END=29356668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29356669	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	29356670	.	T	.	.	LowGQX	END=29356684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29358412	.	A	.	.	LowGQX	END=29358486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29358487	.	T	.	.	LowGQX	.	GT	./.
chr2	29358488	.	G	.	.	LowGQX	END=29358527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29358528	.	T	.	.	LowGQX	END=29358581	GT	./.
chr2	29366573	.	A	.	.	LowGQX	END=29366714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29366715	.	G	.	.	LowGQX	END=29366813	GT	./.
chr2	29368096	.	A	.	.	LowGQX	END=29368235	GT	./.
chr2	29375549	.	A	.	.	LowGQX	END=29375728	GT	./.
chr2	29379215	.	C	.	.	LowGQX	END=29379228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	29379229	.	C	.	.	LowGQX	END=29379367	GT	./.
chr2	29380057	.	T	.	.	LowGQX	END=29380060	GT	./.
chr2	29380061	.	C	.	.	LowGQX	END=29380066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380067	.	C	.	.	LowGQX	.	GT	./.
chr2	29380068	.	A	.	.	LowGQX	END=29380075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380076	.	T	.	.	LowGQX	.	GT	./.
chr2	29380077	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380078	.	C	.	.	LowGQX	.	GT	./.
chr2	29380079	.	T	.	.	LowGQX	END=29380091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380092	.	C	.	.	LowGQX	.	GT	./.
chr2	29380093	.	A	.	.	LowGQX	END=29380095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380096	.	T	.	.	LowGQX	END=29380097	GT	./.
chr2	29380098	.	C	.	.	LowGQX	END=29380107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380108	.	T	.	.	LowGQX	.	GT	./.
chr2	29380109	.	C	.	.	LowGQX	END=29380115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380116	.	G	.	.	LowGQX	.	GT	./.
chr2	29380117	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380118	.	A	.	.	LowGQX	.	GT	./.
chr2	29380119	.	A	.	.	LowGQX	END=29380124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380125	.	A	.	.	LowGQX	.	GT	./.
chr2	29380126	.	C	.	.	LowGQX	END=29380127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380128	.	G	.	.	LowGQX	END=29380130	GT	./.
chr2	29380131	.	C	.	.	LowGQX	END=29380132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380133	.	A	.	.	LowGQX	END=29380134	GT	./.
chr2	29380135	.	C	.	.	LowGQX	END=29380136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380137	.	C	.	.	LowGQX	END=29380141	GT	./.
chr2	29380142	.	A	.	.	LowGQX	END=29380146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380147	.	A	.	.	LowGQX	.	GT	./.
chr2	29380148	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380149	.	T	.	.	LowGQX	.	GT	./.
chr2	29380150	.	G	.	.	LowGQX	END=29380159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380160	.	G	.	.	LowGQX	.	GT	./.
chr2	29380161	.	T	.	.	LowGQX	END=29380163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380164	.	C	.	.	LowGQX	.	GT	./.
chr2	29380165	.	A	.	.	LowGQX	END=29380175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380176	.	G	.	.	LowGQX	.	GT	./.
chr2	29380177	.	A	.	.	LowGQX	END=29380182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380183	.	A	.	.	LowGQX	END=29380184	GT	./.
chr2	29380185	.	C	.	.	LowGQX	END=29380187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380188	.	T	.	.	LowGQX	.	GT	./.
chr2	29380189	.	T	.	.	LowGQX	END=29380199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380200	.	C	.	.	LowGQX	.	GT	./.
chr2	29380201	.	A	.	.	LowGQX	END=29380202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380203	.	A	.	.	LowGQX	END=29380204	GT	./.
chr2	29380205	.	C	.	.	LowGQX	END=29380209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29380210	.	G	.	.	LowGQX	END=29380276	GT	./.
chr2	29383157	.	C	.	.	LowGQX	END=29383267	GT	./.
chr2	29383268	.	G	.	.	LowGQX	END=29383293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29383294	.	G	.	.	LowGQX	.	GT	./.
chr2	29383295	.	G	.	.	LowGQX	END=29383302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29383303	.	A	.	.	LowGQX	.	GT	./.
chr2	29383304	.	G	.	.	LowGQX	END=29383316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29383317	.	A	.	.	LowGQX	.	GT	./.
chr2	29383318	.	A	.	.	LowGQX	END=29383335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29386690	.	G	.	.	LowGQX	END=29386822	GT	./.
chr2	29390325	.	C	.	.	LowGQX	END=29390424	GT	./.
chr2	29397227	.	T	.	.	LowGQX	END=29397326	GT	./.
chr2	29404436	.	A	.	.	LowGQX	END=29404761	GT	./.
chr2	29412356	.	G	.	.	LowGQX	END=29412471	GT	./.
chr2	29416039	.	C	.	.	PASS	END=29416046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr2	29416047	.	G	.	.	PASS	END=29416071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	29416072	.	G	.	.	PASS	END=29416082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	29416083	.	A	.	.	PASS	END=29416094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	29416095	.	G	.	.	PASS	END=29416122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	29416123	.	T	.	.	PASS	END=29416150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	29416151	.	G	.	.	PASS	END=29416185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr2	29416186	.	C	.	.	PASS	END=29416469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:253:99:60
chr2	29416470	.	A	.	.	PASS	END=29416489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr2	29416490	.	T	.	.	PASS	END=29416516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	29416517	.	G	.	.	PASS	END=29416530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	29416531	.	T	.	.	PASS	END=29416556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	29416557	.	G	.	.	PASS	END=29416568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	29416569	.	A	.	.	PASS	END=29416571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	29416572	.	T	C	1906.04	PASS	BaseQRankSum=-0.851;DP=59;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=8.6800;MQ=60;MQ0=0;MQRankSum=-0.206;QD=32.31;ReadPosRankSum=1.028;SB=-67.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,58:59:99:1939,120,0:60:99:0.983
chr2	29416573	.	C	.	.	PASS	END=29416610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	29416611	.	A	.	.	PASS	END=29416626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr2	29416627	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:54:60
chr2	29416628	.	G	.	.	PASS	END=29416629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:96:60
chr2	29416630	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:63:60
chr2	29416631	.	G	.	.	PASS	END=29416638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr2	29416639	.	T	.	.	PASS	END=29416640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr2	29416641	.	G	.	.	PASS	END=29416642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:90:60
chr2	29416643	.	C	.	.	PASS	END=29416648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr2	29416649	.	T	.	.	PASS	END=29416658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr2	29416659	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:69:60
chr2	29416660	.	T	.	.	PASS	END=29416661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr2	29416662	.	T	.	.	PASS	END=29416666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	29416667	.	T	.	.	PASS	END=29416671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr2	29416672	.	A	.	.	PASS	END=29416675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr2	29416676	.	A	.	.	PASS	END=29416677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr2	29416678	.	C	.	.	PASS	END=29416679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr2	29416680	.	G	.	.	PASS	END=29416688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr2	29416689	.	G	.	.	PASS	END=29416696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	29416697	.	T	.	.	PASS	END=29416702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	29416703	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr2	29416704	.	C	.	.	PASS	END=29416706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	29416707	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	29416708	.	G	.	.	PASS	END=29416712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	29416713	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	29416714	.	C	.	.	PASS	END=29416738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	29416739	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	29416740	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	29416741	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	29416742	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	29416743	.	G	.	.	LowGQX	END=29416754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	29416755	.	C	.	.	LowGQX	END=29416758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	29416759	.	C	.	.	LowGQX	END=29416766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	29416767	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:0:60
chr2	29416768	.	G	.	.	LowGQX	END=29416782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	29416783	.	C	.	.	LowGQX	END=29416785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	29416786	.	G	.	.	LowGQX	END=29416803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	29416804	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	29416805	.	T	.	.	LowGQX	END=29416832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	29416833	.	A	.	.	LowGQX	.	GT	./.
chr2	29416834	.	T	.	.	LowGQX	END=29416839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	29419585	.	A	.	.	PASS	END=29419590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	29419591	.	G	T	2539.72	PASS	DP=74;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=1.9886;MQ=60;MQ0=0;QD=34.32;SB=-1015.82	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,74:74:99:2573,196,0:60:99:1.000
chr2	29419592	.	T	.	.	PASS	END=29419693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	29419694	.	T	.	.	PASS	END=29419731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	29419732	.	A	.	.	PASS	END=29419777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr2	29420347	.	A	.	.	PASS	END=29420348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr2	29420349	.	A	.	.	PASS	END=29420377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	29420378	.	C	.	.	PASS	END=29420384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr2	29420385	.	A	.	.	PASS	END=29420391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr2	29420392	.	C	.	.	PASS	END=29420402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr2	29420403	.	C	.	.	PASS	END=29420419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	29420420	.	C	.	.	PASS	END=29420441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	29420442	.	G	.	.	PASS	END=29420539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	29420540	.	G	.	.	PASS	END=29420555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	29420556	.	A	.	.	PASS	END=29420572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	29420573	.	A	.	.	PASS	END=29420580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr2	29420581	.	A	.	.	PASS	END=29420593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	29429986	.	G	.	.	PASS	END=29430010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	29430011	.	T	.	.	PASS	END=29430108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	29430109	.	G	.	.	PASS	END=29430130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	29430131	.	A	.	.	PASS	END=29430134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	29430135	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:61:60
chr2	29430136	.	G	.	.	PASS	END=29430138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	29430139	.	C	.	.	PASS	END=29430140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:74:60
chr2	29430141	.	G	.	.	PASS	END=29430158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	29430159	.	A	.	.	PASS	END=29430163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr2	29430164	.	A	.	.	PASS	END=29430184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr2	29430185	.	T	.	.	PASS	END=29430189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr2	29430861	.	A	.	.	LowGQX	END=29430960	GT	./.
chr2	29432601	.	G	.	.	LowGQX	END=29432650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	29432651	.	C	.	.	LowGQX	END=29432706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	29432707	.	C	.	.	LowGQX	END=29432795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	29436799	.	C	.	.	PASS	END=29436810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	29436811	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:67:60
chr2	29436812	.	G	.	.	PASS	END=29436900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:98:60
chr2	29436901	.	C	.	.	PASS	END=29436929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr2	29436930	.	C	.	.	PASS	END=29436940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr2	29436941	.	G	.	.	PASS	END=29436958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr2	29436959	.	C	.	.	PASS	END=29436982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr2	29436983	.	C	.	.	PASS	END=29436998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr2	29443521	.	T	.	.	PASS	END=29443528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr2	29443529	.	G	.	.	PASS	END=29443538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	29443539	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:24:60
chr2	29443540	.	A	.	.	PASS	END=29443554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr2	29443555	.	G	.	.	PASS	END=29443564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr2	29443565	.	C	.	.	PASS	END=29443571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	29443572	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:42:60
chr2	29443573	.	G	.	.	PASS	END=29443580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr2	29443581	.	G	.	.	PASS	END=29443611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr2	29443612	.	C	.	.	PASS	END=29443649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	29443650	.	G	.	.	PASS	END=29443724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	29443725	.	C	.	.	PASS	END=29443734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	29443735	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:69:60
chr2	29443736	.	T	.	.	PASS	END=29443752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	29443857	.	A	.	.	LowGQX	END=29443864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	29443865	.	A	.	.	LowGQX	END=29443867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	29443868	.	T	.	48.05	LowGQX	DP=8;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:6:8:18.06:60:18
chr2	29443869	.	T	.	.	LowGQX	END=29443871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	29443872	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr2	29443873	.	G	.	.	LowGQX	END=29443882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	29443883	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr2	29443884	.	G	.	.	LowGQX	END=29443889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	29443890	.	A	.	.	LowGQX	END=29443899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	29443900	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr2	29443901	.	G	.	.	LowGQX	END=29443906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	29443907	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr2	29443908	.	A	.	.	LowGQX	END=29443927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr2	29443928	.	A	.	.	LowGQX	END=29443932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	29443933	.	C	.	.	LowGQX	END=29443939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	29443940	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr2	29443941	.	G	.	.	LowGQX	END=29443944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	29443945	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr2	29443946	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr2	29443947	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr2	29443948	.	T	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr2	29443949	.	G	.	.	LowGQX	END=29443950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	29443951	.	T	.	42.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.03:60:12
chr2	29443952	.	G	.	.	LowGQX	END=29443953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	29443954	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr2	29443955	.	C	.	.	LowGQX	END=29443962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	29443963	.	T	.	.	LowGQX	END=29443964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr2	29443965	.	G	.	.	LowGQX	END=29443966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr2	29443967	.	T	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr2	29443968	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr2	29443969	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr2	29443970	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr2	29443971	.	G	.	.	LowGQX	END=29443974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	29443975	.	T	.	.	LowGQX	END=29443976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	29443977	.	T	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr2	29443978	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr2	29443979	.	T	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.02:60:9
chr2	29443980	.	C	.	.	LowGQX	END=29443994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	29443995	.	T	.	.	LowGQX	END=29443996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	29443997	.	T	.	.	LowGQX	.	GT	./.
chr2	29443998	.	C	.	.	LowGQX	END=29444022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	29444023	.	T	.	.	LowGQX	.	GT	./.
chr2	29444024	.	G	.	.	LowGQX	END=29444026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29444027	.	T	.	.	LowGQX	END=29444028	GT	./.
chr2	29444029	.	C	.	.	LowGQX	END=29444035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29444036	.	T	.	.	LowGQX	.	GT	./.
chr2	29444037	.	C	.	.	LowGQX	END=29444040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29444041	.	G	.	.	LowGQX	.	GT	./.
chr2	29444042	.	T	.	.	LowGQX	END=29444046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29444047	.	T	.	.	LowGQX	.	GT	./.
chr2	29444048	.	T	.	.	LowGQX	END=29444054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29444055	.	G	.	.	LowGQX	.	GT	./.
chr2	29444056	.	G	.	.	LowGQX	END=29444087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29444088	.	C	.	.	LowGQX	.	GT	./.
chr2	29444089	.	T	.	.	LowGQX	END=29444094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29444095	.	C	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	29444096	.	A	.	.	LowGQX	END=29444097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	29444098	.	G	.	.	LowGQX	END=29444103	GT	./.
chr2	29445159	.	T	.	.	PASS	END=29445191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	29445192	.	G	.	.	PASS	END=29445325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	29445332	.	C	.	.	PASS	END=29445445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	29445446	.	C	.	.	PASS	END=29445472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	29445473	.	C	.	.	PASS	END=29445484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	29445485	.	A	.	.	PASS	END=29445509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr2	29445510	.	A	.	.	PASS	END=29445511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr2	29445512	.	A	.	.	PASS	END=29445524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr2	29446157	.	C	.	.	PASS	END=29446158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	29446159	.	G	.	.	PASS	END=29446174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	29446175	.	C	.	.	PASS	END=29446191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	29446192	.	G	.	.	PASS	END=29446201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	29446202	.	G	A	2918.18	PASS	DP=111;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=9.5747;MQ=60;MQ0=0;QD=26.29;SB=-1053.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,110:111:99:2951,226,0:60:99:1.000
chr2	29446203	.	C	.	.	PASS	END=29446253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	29446254	.	T	.	.	PASS	END=29446321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	29446322	.	T	.	.	PASS	END=29446338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	29446339	.	A	.	.	PASS	END=29446356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	29446357	.	C	.	.	PASS	END=29446394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	29446395	.	C	.	.	PASS	END=29446404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	29446405	.	G	.	.	PASS	END=29446408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr2	29446409	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:69:60
chr2	29446410	.	C	.	.	PASS	END=29446421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr2	29446422	.	G	.	.	PASS	END=29446445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr2	29448276	.	C	.	.	PASS	END=29448296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	29448297	.	T	.	.	PASS	END=29448313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	29448314	.	T	.	.	PASS	END=29448444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	29448445	.	C	.	.	PASS	END=29448464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	29448465	.	C	.	.	PASS	END=29448482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	29449737	.	C	.	.	PASS	END=29449746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	29449747	.	G	.	.	PASS	END=29449758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr2	29449759	.	C	.	.	PASS	END=29449766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr2	29449767	.	C	.	.	PASS	END=29449775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	29449776	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:72:60
chr2	29449777	.	T	.	.	PASS	END=29449798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:80:60
chr2	29449799	.	A	.	.	PASS	END=29449821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:78:60
chr2	29449822	.	C	.	.	PASS	END=29449854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	29449855	.	T	.	.	PASS	END=29449880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	29449881	.	C	.	.	PASS	END=29449944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	29449945	.	T	.	.	PASS	END=29449972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	29449973	.	C	.	.	PASS	END=29449991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	29450389	.	T	.	.	PASS	END=29450408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	29450409	.	A	.	.	PASS	END=29450455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	29450456	.	G	.	.	PASS	END=29450501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	29450502	.	T	.	.	PASS	END=29450549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	29450550	.	A	.	.	PASS	END=29450575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr2	29450576	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:69:60
chr2	29450577	.	G	.	.	PASS	END=29450579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr2	29450580	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:57:60
chr2	29450581	.	G	.	.	PASS	END=29450589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr2	29451699	.	C	.	.	PASS	END=29451710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	29451711	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:18:60
chr2	29451712	.	A	.	.	PASS	END=29451719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	29451720	.	A	.	.	PASS	END=29451725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	29451726	.	A	.	.	PASS	END=29451729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr2	29451730	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:62:60
chr2	29451731	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:87:60
chr2	29451732	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:60:60
chr2	29451733	.	A	.	.	PASS	END=29451749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr2	29451750	.	C	.	.	PASS	END=29451757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr2	29451758	.	C	.	.	PASS	END=29451771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:59
chr2	29451772	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:72:59
chr2	29451773	.	C	.	.	PASS	END=29451782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:78:59
chr2	29451783	.	A	.	63.10	PASS	DP=31;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:19:31:33.10:59:33
chr2	29451784	.	C	.	.	PASS	END=29451787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:45:59
chr2	29451788	.	C	.	.	PASS	END=29451789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:59
chr2	29451790	.	T	.	.	PASS	END=29451794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr2	29451795	.	C	.	.	PASS	END=29451802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	29451803	.	A	.	.	PASS	END=29451808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	29451809	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:69:60
chr2	29451810	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:27:60
chr2	29451811	.	T	.	.	PASS	END=29451813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	29451814	.	T	.	.	PASS	END=29451815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr2	29451816	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:54:60
chr2	29451817	.	C	.	.	PASS	END=29451821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr2	29451822	.	A	.	.	PASS	END=29451838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr2	29451839	.	G	.	.	PASS	END=29451865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr2	29451866	.	G	.	.	PASS	END=29451878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	29451879	.	A	.	.	PASS	END=29451956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:81:60
chr2	29451957	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:70:60
chr2	29451958	.	G	.	.	PASS	END=29451970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr2	29451971	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:58:60
chr2	29451972	.	A	.	.	PASS	END=29451983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr2	29455119	.	G	.	.	PASS	END=29455142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	29455143	.	G	.	.	PASS	END=29455161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	29455162	.	C	.	.	PASS	END=29455194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	29455195	.	C	.	.	PASS	END=29455236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr2	29455237	.	C	T	2283.91	PASS	BaseQRankSum=2.857;DP=199;Dels=0.00;FS=4.283;HRun=0;HaplotypeScore=18.0419;MQ=60;MQ0=0;MQRankSum=1.230;QD=11.48;ReadPosRankSum=-0.417;SB=-1176.09	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:99,100:199:99:2314,0,2162:60:99:0.503
chr2	29455238	.	G	.	.	PASS	END=29455266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr2	29455267	.	A	G	5170.88	PASS	DP=184;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=20.0389;MQ=60;MQ0=0;QD=28.10;SB=-2999.17	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,183:184:99:5171,391,0:60:99:1.000
chr2	29455268	.	C	.	.	PASS	END=29455325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	29455326	.	A	.	.	PASS	END=29455365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	29456380	.	A	.	.	PASS	END=29456400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr2	29456401	.	C	.	.	PASS	END=29456415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:66:60
chr2	29456416	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:36:60
chr2	29456417	.	A	.	.	PASS	END=29456418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:60
chr2	29456419	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:48:60
chr2	29456420	.	A	.	.	PASS	END=29456457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr2	29456458	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:99:60
chr2	29456459	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:70:60
chr2	29456460	.	C	.	.	PASS	END=29456485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	29456486	.	A	.	.	PASS	END=29456613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	29462495	.	T	.	.	PASS	END=29462525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr2	29462526	.	C	.	.	PASS	END=29462584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr2	29462585	.	G	.	.	PASS	END=29462726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:257:99:60
chr2	29462727	.	C	.	.	PASS	END=29462747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr2	29473920	.	C	.	.	PASS	END=29473935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	29473936	.	G	.	.	PASS	END=29473969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	29473970	.	C	.	.	PASS	END=29474121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr2	29474122	.	A	.	.	PASS	END=29474184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	29497914	.	C	.	.	PASS	END=29497932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr2	29497933	.	A	.	.	PASS	END=29497955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:88:60
chr2	29497956	.	A	.	.	PASS	END=29497971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	29497972	.	G	.	.	PASS	END=29498095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	29498096	.	G	.	.	PASS	END=29498115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	29498116	.	G	.	.	PASS	END=29498139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	29498140	.	T	.	.	PASS	END=29498144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	29498217	.	C	.	.	PASS	END=29498222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr2	29498223	.	C	.	.	PASS	END=29498224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	29498225	.	A	.	.	PASS	END=29498226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:57:60
chr2	29498227	.	G	.	.	PASS	END=29498231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr2	29498232	.	T	.	.	PASS	END=29498233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:66:60
chr2	29498234	.	G	.	.	PASS	END=29498237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr2	29498238	.	G	.	.	PASS	END=29498242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr2	29498243	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:66:60
chr2	29498244	.	G	.	.	PASS	END=29498281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	29498282	.	T	.	.	PASS	END=29498312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	29498313	.	C	.	.	PASS	END=29498373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	29498374	.	A	.	.	PASS	END=29498394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	29498395	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:75:60
chr2	29498396	.	A	.	.	PASS	END=29498406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr2	29498407	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:51:60
chr2	29498408	.	C	.	.	PASS	END=29498413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr2	29519703	.	C	.	.	PASS	END=29519712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	29519713	.	G	.	.	PASS	END=29519716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr2	29519717	.	G	.	.	PASS	END=29519738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr2	29519739	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:69:60
chr2	29519740	.	T	.	.	PASS	END=29519754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr2	29519755	.	T	.	.	PASS	END=29519760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr2	29519761	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:56:60
chr2	29519762	.	C	.	.	PASS	END=29519775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr2	29519776	.	G	.	.	PASS	END=29519806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	29519807	.	T	.	.	PASS	END=29519831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	29519832	.	A	.	.	PASS	END=29519923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	29519924	.	C	.	.	PASS	END=29519955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	29519956	.	A	.	.	PASS	END=29519963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	29519964	.	T	.	.	PASS	END=29519974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	29541119	.	G	.	.	PASS	END=29541201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	29541202	.	A	.	.	PASS	END=29541252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	29541253	.	T	.	.	PASS	END=29541277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	29541278	.	A	.	.	PASS	END=29541319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr2	29541320	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:37:60
chr2	29541321	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:81:60
chr2	29543566	.	T	.	.	PASS	END=29543591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	29543592	.	A	.	.	PASS	END=29543599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr2	29543600	.	C	.	.	PASS	END=29543609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr2	29543610	.	G	.	.	PASS	END=29543624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	29543625	.	T	.	.	PASS	END=29543640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr2	29543641	.	C	.	.	PASS	END=29543655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr2	29543656	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:66:60
chr2	29543657	.	C	.	.	PASS	END=29543662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr2	29543663	.	T	C	1383.90	PASS	DP=51;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.6815;MQ=60;MQ0=0;QD=27.14;SB=-622.67	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,51:51:99:1417,105,0:60:99:1.000
chr2	29543664	.	T	.	.	PASS	END=29543683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	29543684	.	T	.	.	PASS	END=29543766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	29543767	.	G	.	.	PASS	END=29543799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr2	29551165	.	T	.	.	PASS	END=29551177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	29551178	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:27:60
chr2	29551179	.	T	.	.	PASS	END=29551184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	29551185	.	C	.	.	PASS	END=29551190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr2	29551191	.	G	.	.	PASS	END=29551197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	29551198	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:69:60
chr2	29551199	.	C	.	.	PASS	END=29551212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr2	29551213	.	C	.	.	PASS	END=29551219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:82:60
chr2	29551220	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:64:54:60
chr2	29551221	.	A	.	.	PASS	END=29551249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:96:60
chr2	29551250	.	G	.	.	PASS	END=29551284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	29551285	.	G	.	.	PASS	END=29551351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	29551352	.	A	.	.	PASS	END=29551370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	29551371	.	C	.	.	PASS	END=29551397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	29551398	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:99:60
chr2	29606547	.	C	.	.	PASS	END=29606564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr2	29606565	.	A	.	.	PASS	END=29606590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	29606591	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:76:60
chr2	29606592	.	A	.	.	PASS	END=29606680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	29606681	.	A	.	.	PASS	END=29606726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr2	29606727	.	T	.	.	PASS	END=29606732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	29606733	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr2	29606734	.	A	.	.	PASS	END=29606758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr2	29606759	.	A	.	.	PASS	END=29606776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:69:60
chr2	29754730	.	A	.	.	PASS	END=29754755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	29754756	.	A	.	.	PASS	END=29754787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	29754788	.	T	.	.	PASS	END=29754856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	29754857	.	T	.	.	PASS	END=29754938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr2	29754939	.	G	.	.	PASS	END=29754979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	29754980	.	A	.	.	PASS	END=29755026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	29755027	.	A	.	.	PASS	END=29755033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	29917665	.	T	.	.	PASS	END=29917671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr2	29917672	.	T	.	.	PASS	END=29917694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr2	29917695	.	C	.	.	PASS	END=29917727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	29917728	.	C	.	.	PASS	END=29917816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	29917817	.	C	.	.	PASS	END=29917847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	29917848	.	G	.	.	PASS	END=29917878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	29917879	.	A	.	.	PASS	END=29917883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	29917884	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr2	29917885	.	A	.	.	PASS	END=29917906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr2	29917907	.	A	.	.	PASS	END=29917920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr2	29917921	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:36:24:60
chr2	29917922	.	A	.	.	PASS	END=29917931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	29940392	.	T	.	.	PASS	END=29940399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	29940400	.	G	.	.	PASS	END=29940409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	29940410	.	G	.	.	PASS	END=29940430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr2	29940431	.	A	.	.	PASS	END=29940456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	29940457	.	A	.	.	PASS	END=29940528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	29940529	.	A	T	2099.88	PASS	DP=83;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7346;MQ=60;MQ0=0;QD=25.30;SB=-1254.19	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,83:83:99:2133,159,0:60:99:1.000
chr2	29940530	.	G	.	.	PASS	END=29940564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	29940565	.	T	.	.	PASS	END=29940593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	29940594	.	C	.	.	PASS	END=29940606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr2	29940607	.	T	.	.	PASS	END=29940614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr2	30142808	.	A	.	.	PASS	END=30142814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	30142815	.	C	.	.	PASS	END=30142821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr2	30142822	.	C	.	.	PASS	END=30142838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr2	30142839	.	C	.	.	PASS	END=30142844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	30142845	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:51:60
chr2	30142846	.	G	.	.	PASS	END=30142869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	30142870	.	A	.	.	PASS	END=30142886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	30142887	.	G	.	.	PASS	END=30142925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	30142926	.	T	.	.	PASS	END=30142962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	30142963	.	C	.	.	PASS	END=30143018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	30143019	.	A	.	.	PASS	END=30143121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	30143122	.	A	.	.	PASS	END=30143162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	30143163	.	C	.	.	PASS	END=30143376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	30143377	.	T	.	.	PASS	END=30143391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	30143392	.	C	.	.	PASS	END=30143436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	30143437	.	C	.	.	PASS	END=30143471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr2	30143472	.	A	.	.	PASS	END=30143477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr2	30143478	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:60
chr2	30143479	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:99:60
chr2	30143480	.	T	.	.	PASS	END=30143481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr2	30143482	.	G	.	.	PASS	END=30143486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr2	30143487	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:54:60
chr2	30143488	.	A	.	.	PASS	END=30143489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:96:60
chr2	30143490	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:63:60
chr2	30143491	.	A	.	.	PASS	END=30143498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr2	30143499	.	G	C	1229.74	SB	DP=34;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9997;MQ=60;MQ0=0;QD=36.17;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,34:34:99:1263,99,0:60:99:1.000
chr2	30143500	.	A	.	.	PASS	END=30143501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:96:60
chr2	30143502	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:69:60
chr2	30143503	.	C	.	.	PASS	END=30143510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	30143511	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:71:60
chr2	30143512	.	C	.	.	PASS	END=30143540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	30143541	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:60:60
chr2	30143542	.	G	.	.	PASS	END=30143546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr2	30143547	.	C	.	.	PASS	END=30143552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr2	30143553	.	T	.	.	PASS	END=30143573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr2	30143574	.	T	.	.	PASS	END=30143576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr2	30379516	.	A	.	.	LowGQX	END=30379660	GT	./.
chr2	30381483	.	A	.	.	LowGQX	END=30381504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30381505	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	30381506	.	G	.	.	LowGQX	END=30381545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30381546	.	T	.	.	LowGQX	.	GT	./.
chr2	30381547	.	T	.	.	LowGQX	END=30381592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30381593	.	T	.	.	LowGQX	END=30381711	GT	./.
chr2	30454513	.	G	.	.	LowGQX	END=30454667	GT	./.
chr2	30455001	.	G	.	.	LowGQX	END=30455004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30455005	.	C	.	.	LowGQX	.	GT	./.
chr2	30455006	.	C	.	.	LowGQX	END=30455009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30455010	.	T	.	.	LowGQX	.	GT	./.
chr2	30455011	.	C	.	.	LowGQX	END=30455017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30455018	.	T	.	.	LowGQX	.	GT	./.
chr2	30455019	.	T	.	.	LowGQX	END=30455031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30455032	.	C	.	.	LowGQX	.	GT	./.
chr2	30455033	.	A	.	.	LowGQX	END=30455034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30455035	.	G	.	.	LowGQX	END=30455093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	30455094	.	A	.	.	LowGQX	.	GT	./.
chr2	30455095	.	G	.	.	LowGQX	END=30455096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	30455097	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	30455098	.	C	.	.	LowGQX	END=30455100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	30457269	.	A	.	.	LowGQX	.	GT	./.
chr2	30457270	.	G	.	.	LowGQX	END=30457272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30457273	.	C	.	.	LowGQX	.	GT	./.
chr2	30457274	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	30457275	.	G	.	.	LowGQX	END=30457286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	30457287	.	T	.	.	LowGQX	.	GT	./.
chr2	30457288	.	C	.	.	LowGQX	END=30457316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	30457317	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	30457318	.	C	.	.	LowGQX	END=30457332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30457333	.	A	.	.	LowGQX	.	GT	./.
chr2	30457334	.	G	.	.	LowGQX	END=30457335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30457336	.	T	.	.	LowGQX	.	GT	./.
chr2	30457337	.	C	.	.	LowGQX	END=30457342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30457343	.	C	.	.	LowGQX	.	GT	./.
chr2	30457344	.	A	.	.	LowGQX	END=30457368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30457369	.	A	.	.	LowGQX	END=30457370	GT	./.
chr2	30457371	.	C	.	.	LowGQX	END=30457373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30457374	.	G	.	.	LowGQX	.	GT	./.
chr2	30457375	.	T	.	.	LowGQX	END=30457377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30480287	.	C	.	.	LowGQX	END=30480353	GT	./.
chr2	30480354	.	C	.	.	LowGQX	END=30480382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30480383	.	G	.	.	LowGQX	.	GT	./.
chr2	30480384	.	A	.	.	LowGQX	END=30480458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30480459	.	A	.	.	LowGQX	.	GT	./.
chr2	30480460	.	G	.	.	LowGQX	END=30480461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30480462	.	C	.	.	LowGQX	.	GT	./.
chr2	30480463	.	A	.	.	LowGQX	END=30480469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30480470	.	G	.	.	LowGQX	.	GT	./.
chr2	30480471	.	A	.	.	LowGQX	END=30480483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30480484	.	G	.	.	LowGQX	.	GT	./.
chr2	30480485	.	T	.	.	LowGQX	END=30480489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30546344	.	A	.	.	LowGQX	END=30546443	GT	./.
chr2	30682477	.	A	.	.	LowGQX	END=30682560	GT	./.
chr2	30682561	.	T	.	.	LowGQX	END=30682564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30682565	.	A	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	30682566	.	A	.	.	LowGQX	END=30682590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30699262	.	T	.	.	LowGQX	END=30699361	GT	./.
chr2	30748451	.	A	.	.	LowGQX	END=30748623	GT	./.
chr2	30755980	.	A	.	.	LowGQX	END=30756050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30756051	.	A	.	.	LowGQX	END=30756185	GT	./.
chr2	30775338	.	A	.	.	LowGQX	END=30775437	GT	./.
chr2	30785010	.	A	.	.	LowGQX	END=30785160	GT	./.
chr2	30790924	.	A	.	.	LowGQX	END=30791044	GT	./.
chr2	30828870	.	T	.	.	LowGQX	END=30829066	GT	./.
chr2	30862981	.	A	.	.	LowGQX	END=30863299	GT	./.
chr2	30863300	.	A	.	.	LowGQX	END=30863487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30953589	.	G	.	.	PASS	END=30953688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	30954188	.	C	.	.	PASS	END=30954287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	30955262	.	G	.	.	PASS	END=30955299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	30955300	.	T	.	.	PASS	END=30955400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	30955401	.	C	.	.	PASS	END=30955450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	30955451	.	G	.	.	PASS	END=30955472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr2	30957303	.	T	.	.	PASS	END=30957350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	30957351	.	G	.	.	PASS	END=30957402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	30959353	.	G	.	.	PASS	END=30959419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	30959420	.	C	.	.	PASS	END=30959452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	30961066	.	G	.	.	PASS	END=30961115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	30961116	.	C	.	.	PASS	END=30961165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr2	30961245	.	T	.	.	PASS	END=30961330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	30961331	.	A	.	.	PASS	END=30961344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	30964720	.	T	.	.	PASS	END=30964757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	30964758	.	G	.	.	PASS	END=30964765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	30964766	.	T	.	.	PASS	END=30964830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	30965159	.	A	.	.	PASS	END=30965258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	30966248	.	C	.	.	PASS	END=30966331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr2	30966332	.	C	.	.	PASS	END=30966450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr2	30966542	.	T	.	.	PASS	END=30966563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	30966564	.	C	.	.	PASS	END=30966579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	30966580	.	A	.	.	PASS	END=30966591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr2	30966592	.	A	.	.	PASS	END=30966594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:93:60
chr2	30966595	.	T	.	.	PASS	END=30966618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr2	30966619	.	C	.	.	PASS	END=30966621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr2	30966622	.	T	.	.	PASS	END=30966623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	30966624	.	A	.	.	PASS	END=30966636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	30966637	.	C	.	.	PASS	END=30966641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	30968071	.	C	.	.	PASS	END=30968145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	30968146	.	C	.	.	PASS	END=30968170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	30968545	.	A	.	.	LowGQX	END=30968614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30968615	.	G	.	.	LowGQX	.	GT	./.
chr2	30968616	.	A	.	.	LowGQX	END=30968644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	30973967	.	A	.	.	PASS	END=30974082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	30974083	.	A	.	.	PASS	END=30974117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	30975918	.	C	.	.	PASS	END=30975952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	30975953	.	C	.	.	PASS	END=30975980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	30975981	.	G	.	.	PASS	END=30976026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	30976027	.	T	.	.	PASS	END=30976057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	30976058	.	C	T	3133.01	PASS	DP=107;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;QD=29.28;SB=-1517.35	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,107:107:99:3166,235,0:60:99:1.000
chr2	30976059	.	G	.	.	PASS	END=30976064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	30977143	.	G	.	.	PASS	END=30977168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	30977169	.	C	.	.	PASS	END=30977231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	30977232	.	T	.	.	PASS	END=30977242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	30980908	.	A	.	.	PASS	END=30980939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	30980940	.	C	T	1951.98	PASS	DP=76;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;QD=25.68;SB=-921.26	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,75:76:99:1985,147,0:60:99:1.000
chr2	30980941	.	C	.	.	PASS	END=30981003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	30981004	.	C	.	.	PASS	END=30981007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	30985935	.	C	.	.	PASS	END=30985966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	30985967	.	G	.	.	PASS	END=30985996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	30985997	.	T	.	.	PASS	END=30986034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr2	30986997	.	C	.	.	PASS	END=30987000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr2	30987001	.	A	.	.	PASS	END=30987002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	30987003	.	T	.	.	PASS	END=30987015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr2	30987016	.	G	.	.	PASS	END=30987039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr2	30987040	.	C	.	.	PASS	END=30987070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr2	30987071	.	G	.	.	PASS	END=30987091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	30987092	.	T	.	.	PASS	END=30987164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	30987165	.	C	.	.	PASS	END=30987172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	30993178	.	C	.	.	PASS	END=30993291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	30993292	.	C	.	.	PASS	END=30993304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	30993305	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:76:60
chr2	30993306	.	A	.	.	PASS	END=30993315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	30998795	.	C	.	.	PASS	END=30998841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	30998842	.	A	.	.	PASS	END=30998890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	30998891	.	C	.	.	PASS	END=30998911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:90:60
chr2	31000419	.	T	.	.	PASS	END=31000506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	31000507	.	T	.	.	PASS	END=31000518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	31009993	.	C	.	.	PASS	END=31010038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr2	31010039	.	C	.	.	PASS	END=31010156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr2	31010157	.	G	.	.	PASS	END=31010191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr2	31133765	.	C	.	.	LowGQX	END=31133927	GT	./.
chr2	31135087	.	A	.	.	LowGQX	END=31135088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31135089	.	C	.	.	LowGQX	END=31135210	GT	./.
chr2	31146983	.	A	.	.	LowGQX	END=31147131	GT	./.
chr2	31147598	.	A	.	.	LowGQX	END=31147697	GT	./.
chr2	31152258	.	T	.	.	LowGQX	END=31152357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	31154932	.	A	.	.	LowGQX	END=31155062	GT	./.
chr2	31165065	.	A	.	.	LowGQX	END=31165073	GT	./.
chr2	31165074	.	C	.	.	LowGQX	END=31165172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	31167717	.	C	.	.	LowGQX	END=31167765	GT	./.
chr2	31167766	.	G	.	.	LowGQX	END=31167816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	31168643	.	A	.	.	LowGQX	END=31168742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31178482	.	A	.	.	LowGQX	END=31178607	GT	./.
chr2	31178761	.	C	.	.	LowGQX	END=31178860	GT	./.
chr2	31181247	.	G	.	.	LowGQX	END=31181346	GT	./.
chr2	31189068	.	A	.	.	LowGQX	END=31189170	GT	./.
chr2	31215702	.	A	.	.	LowGQX	END=31215875	GT	./.
chr2	31301762	.	C	.	.	LowGQX	END=31301861	GT	./.
chr2	31337601	.	G	.	.	LowGQX	END=31337615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31337616	.	G	.	.	LowGQX	.	GT	./.
chr2	31337617	.	A	.	.	LowGQX	END=31337682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31337683	.	A	.	.	LowGQX	END=31337700	GT	./.
chr2	31348019	.	C	.	.	LowGQX	END=31348119	GT	./.
chr2	31355522	.	T	.	.	LowGQX	END=31355621	GT	./.
chr2	31360822	.	A	.	.	LowGQX	END=31360954	GT	./.
chr2	31369759	.	A	.	.	LowGQX	END=31369858	GT	./.
chr2	31397510	.	C	.	.	LowGQX	END=31397609	GT	./.
chr2	31399431	.	A	.	.	LowGQX	END=31399530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31399891	.	C	.	.	LowGQX	END=31400008	GT	./.
chr2	31400600	.	T	.	.	LowGQX	END=31400699	GT	./.
chr2	31401301	.	A	.	.	LowGQX	END=31401333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31401334	.	C	.	.	LowGQX	END=31401357	GT	./.
chr2	31401358	.	G	.	.	LowGQX	END=31401401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31401402	.	A	.	.	LowGQX	.	GT	./.
chr2	31401403	.	G	.	.	LowGQX	END=31401416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31401417	.	T	.	.	LowGQX	.	GT	./.
chr2	31401418	.	G	.	.	LowGQX	END=31401420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31401421	.	T	.	.	LowGQX	.	GT	./.
chr2	31401422	.	G	.	.	LowGQX	END=31401454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31401455	.	A	.	.	LowGQX	.	GT	./.
chr2	31401456	.	G	.	.	LowGQX	END=31401460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31403784	.	A	.	.	LowGQX	END=31403883	GT	./.
chr2	31409273	.	G	.	.	LowGQX	END=31409372	GT	./.
chr2	31410602	.	C	.	.	LowGQX	END=31410701	GT	./.
chr2	31411152	.	C	.	.	LowGQX	END=31411251	GT	./.
chr2	31412138	.	C	.	.	LowGQX	END=31412140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31412141	.	A	.	.	LowGQX	END=31412145	GT	./.
chr2	31412146	.	T	.	.	LowGQX	END=31412150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31412151	.	T	.	.	LowGQX	.	GT	./.
chr2	31412152	.	T	.	.	LowGQX	END=31412162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31412163	.	A	.	.	LowGQX	.	GT	./.
chr2	31412164	.	C	.	.	LowGQX	END=31412165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31412166	.	C	.	.	LowGQX	END=31412167	GT	./.
chr2	31412168	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31412169	.	A	.	.	LowGQX	.	GT	./.
chr2	31412170	.	G	.	.	LowGQX	END=31412172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31412173	.	C	.	.	LowGQX	.	GT	./.
chr2	31412174	.	G	.	.	LowGQX	END=31412176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31412177	.	C	.	.	LowGQX	.	GT	./.
chr2	31412178	.	T	.	.	LowGQX	END=31412181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31412182	.	A	.	.	LowGQX	END=31412183	GT	./.
chr2	31412184	.	T	.	.	LowGQX	END=31412189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31412190	.	T	.	.	LowGQX	.	GT	./.
chr2	31412191	.	G	.	.	LowGQX	END=31412209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31412210	.	C	.	.	LowGQX	.	GT	./.
chr2	31412211	.	A	.	.	LowGQX	END=31412212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31412213	.	G	.	.	LowGQX	.	GT	./.
chr2	31412214	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31412215	.	T	.	.	LowGQX	.	GT	./.
chr2	31412216	.	G	.	.	LowGQX	END=31412224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31412225	.	C	.	.	LowGQX	.	GT	./.
chr2	31412226	.	C	.	.	LowGQX	END=31412236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31412237	.	A	.	.	LowGQX	.	GT	./.
chr2	31412238	.	C	.	.	LowGQX	END=31412245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31412246	.	C	.	.	LowGQX	.	GT	./.
chr2	31412247	.	T	.	.	LowGQX	END=31412260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31412261	.	C	.	.	LowGQX	.	GT	./.
chr2	31412262	.	T	.	.	LowGQX	END=31412272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31412273	.	C	.	.	LowGQX	.	GT	./.
chr2	31412274	.	C	.	.	LowGQX	END=31412293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31412294	.	A	.	.	LowGQX	END=31412344	GT	./.
chr2	31412485	.	A	.	.	LowGQX	END=31412584	GT	./.
chr2	31414219	.	T	.	.	LowGQX	END=31414318	GT	./.
chr2	31414796	.	C	.	.	LowGQX	END=31414806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31414807	.	C	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	31414808	.	A	.	.	LowGQX	END=31414818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31414819	.	A	.	.	LowGQX	.	GT	./.
chr2	31414820	.	A	.	.	LowGQX	END=31414862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31414863	.	T	.	.	LowGQX	.	GT	./.
chr2	31414864	.	C	.	.	LowGQX	END=31414874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31414875	.	A	.	.	LowGQX	.	GT	./.
chr2	31414876	.	C	.	.	LowGQX	END=31414882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31414883	.	A	.	.	LowGQX	.	GT	./.
chr2	31414884	.	C	.	.	LowGQX	END=31414888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31414889	.	C	.	.	LowGQX	END=31414964	GT	./.
chr2	31415996	.	C	.	.	LowGQX	END=31416160	GT	./.
chr2	31417262	.	C	.	.	LowGQX	END=31417361	GT	./.
chr2	31420108	.	A	.	.	LowGQX	END=31420207	GT	./.
chr2	31422265	.	C	.	.	LowGQX	END=31422416	GT	./.
chr2	31423316	.	C	.	.	LowGQX	END=31423491	GT	./.
chr2	31424727	.	C	.	.	LowGQX	END=31424864	GT	./.
chr2	31424999	.	C	.	.	LowGQX	END=31425118	GT	./.
chr2	31425921	.	G	.	.	LowGQX	END=31426020	GT	./.
chr2	31428088	.	C	.	.	LowGQX	END=31428313	GT	./.
chr2	31457486	.	C	.	.	LowGQX	END=31457716	GT	./.
chr2	31467138	.	A	.	.	LowGQX	END=31467318	GT	./.
chr2	31472235	.	A	.	.	LowGQX	END=31472336	GT	./.
chr2	31483374	.	A	.	.	LowGQX	END=31483444	GT	./.
chr2	31483445	.	C	.	.	LowGQX	END=31483467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31483468	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	31483469	.	A	.	.	LowGQX	END=31483618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31483619	.	T	.	.	LowGQX	END=31483790	GT	./.
chr2	31484413	.	A	.	.	LowGQX	END=31484460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr2	31484461	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:6:60
chr2	31484462	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr2	31484463	.	T	.	.	LowGQX	END=31484464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:6:60
chr2	31484465	.	C	.	.	LowGQX	END=31484472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	31484473	.	A	.	.	LowGQX	END=31484539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	31484540	.	G	.	.	LowGQX	END=31484543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	31484544	.	T	.	.	LowGQX	.	GT	./.
chr2	31484545	.	C	.	.	LowGQX	END=31484552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31484553	.	G	.	.	LowGQX	.	GT	./.
chr2	31484554	.	A	.	.	LowGQX	END=31484556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31484557	.	T	.	.	LowGQX	.	GT	./.
chr2	31484558	.	C	.	.	LowGQX	END=31484568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31484569	.	A	.	.	LowGQX	END=31484571	GT	./.
chr2	31484572	.	G	.	.	LowGQX	END=31484574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31484575	.	T	.	.	LowGQX	.	GT	./.
chr2	31484576	.	G	.	.	LowGQX	END=31484577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31484578	.	A	.	.	LowGQX	.	GT	./.
chr2	31484579	.	G	.	.	LowGQX	END=31484580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31484581	.	T	.	.	LowGQX	.	GT	./.
chr2	31489041	.	A	.	.	LowGQX	END=31489284	GT	./.
chr2	31489285	.	G	.	.	LowGQX	END=31489446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	31489447	.	G	.	.	LowGQX	END=31489572	GT	./.
chr2	31558773	.	T	.	.	PASS	END=31558789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr2	31558790	.	G	.	.	PASS	END=31558795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	31558796	.	C	.	.	PASS	END=31558821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	31558822	.	C	.	.	PASS	END=31558860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	31558861	.	A	.	.	PASS	END=31558916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	31558917	.	T	.	.	PASS	END=31558925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	31560456	.	G	.	.	PASS	END=31560467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	31560468	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:70:60
chr2	31560469	.	C	.	.	PASS	END=31560470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	31560471	.	C	.	.	PASS	END=31560502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	31560503	.	A	.	.	PASS	END=31560544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	31560545	.	T	.	.	PASS	END=31560621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	31560622	.	A	.	.	PASS	END=31560653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	31560654	.	A	.	.	PASS	END=31560674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	31560675	.	T	.	.	PASS	END=31560697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	31560698	.	G	.	.	PASS	END=31560707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr2	31560708	.	A	.	.	PASS	END=31560709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:87:60
chr2	31560710	.	G	.	.	PASS	END=31560714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	31560715	.	C	.	.	PASS	END=31560722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr2	31560723	.	T	.	.	PASS	END=31560734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	31562304	.	C	.	.	PASS	END=31562309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr2	31562310	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:70:60
chr2	31562311	.	C	.	.	PASS	END=31562328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	31562329	.	A	.	.	PASS	END=31562359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	31562360	.	A	.	.	PASS	END=31562411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	31562412	.	C	T	906.29	PASS	BaseQRankSum=2.095;DP=91;Dels=0.00;FS=7.101;HRun=1;HaplotypeScore=10.4161;MQ=60;MQ0=0;MQRankSum=-1.483;QD=9.96;ReadPosRankSum=-0.942;SB=-638.84	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:48,43:91:99:936,0,1144:60:99:0.473
chr2	31562413	.	T	.	.	PASS	END=31562449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	31562450	.	T	.	.	PASS	END=31562460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:82:60
chr2	31562461	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:72:60
chr2	31562462	.	G	.	.	PASS	END=31562477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr2	31562478	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:43:60
chr2	31562479	.	T	.	.	PASS	END=31562493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr2	31562494	.	A	.	.	PASS	END=31562504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr2	31562505	.	G	.	.	PASS	END=31562506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr2	31562507	.	T	.	.	PASS	END=31562521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	31562522	.	C	.	.	PASS	END=31562536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	31562537	.	C	.	.	PASS	END=31562541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	31562542	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:21:60
chr2	31562543	.	C	.	.	PASS	END=31562549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	31562550	.	G	.	.	LowGQX	END=31562556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr2	31562557	.	G	.	.	PASS	END=31562558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	31562559	.	A	.	.	LowGQX	END=31562562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	31562563	.	C	.	.	LowGQX	END=31562566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	31562567	.	G	.	.	LowGQX	END=31562569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	31562570	.	A	.	.	LowGQX	END=31562575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr2	31562576	.	C	.	.	LowGQX	END=31562594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	31564144	.	G	.	.	PASS	END=31564179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:77:60
chr2	31564180	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:70:60
chr2	31564181	.	C	.	.	PASS	END=31564199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:92:60
chr2	31564200	.	C	.	.	PASS	END=31564233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	31564234	.	A	.	.	PASS	END=31564288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	31564289	.	T	.	.	PASS	END=31564311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	31564998	.	T	.	.	PASS	END=31565132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	31565133	.	A	.	.	PASS	END=31565190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	31565191	.	C	.	.	PASS	END=31565202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr2	31565203	.	T	.	.	PASS	END=31565210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:96:60
chr2	31565211	.	C	.	.	PASS	END=31565212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:48:60
chr2	31565213	.	C	.	.	PASS	END=31565214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr2	31567486	.	A	.	.	PASS	END=31567550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	31567551	.	T	.	.	PASS	END=31567613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	31567614	.	A	.	.	PASS	END=31567641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	31567642	.	T	.	.	PASS	END=31567653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr2	31569584	.	T	.	.	PASS	END=31569593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr2	31569594	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:57:60
chr2	31569595	.	C	.	.	PASS	END=31569622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	31569623	.	G	.	.	PASS	END=31569656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	31569657	.	G	.	.	PASS	END=31569739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	31569740	.	C	.	.	PASS	END=31569760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	31570337	.	C	.	.	PASS	END=31570362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	31570363	.	C	.	.	PASS	END=31570375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	31570376	.	T	C	1659.53	PASS	BaseQRankSum=1.111;DP=153;Dels=0.00;FS=1.392;HRun=0;HaplotypeScore=19.9800;MQ=60;MQ0=0;MQRankSum=-0.024;QD=10.85;ReadPosRankSum=-0.791;SB=-731.57	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:74,78:153:99:1690,0,1756:60:99:0.513
chr2	31570377	.	G	.	.	PASS	END=31570481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	31570482	.	T	.	.	PASS	END=31570522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	31570523	.	A	.	.	PASS	END=31570548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	31570549	.	A	.	.	PASS	END=31570564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	31570565	.	C	.	.	PASS	END=31570567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	31571083	.	A	.	.	PASS	END=31571122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	31571123	.	G	.	.	PASS	END=31571165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	31571166	.	T	.	.	PASS	END=31571210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	31571211	.	C	.	.	PASS	END=31571223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	31571224	.	T	.	.	PASS	END=31571240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	31571241	.	G	C	938.17	PASS	BaseQRankSum=1.442;DP=70;Dels=0.00;FS=3.445;HRun=0;HaplotypeScore=7.6281;MQ=60;MQ0=0;MQRankSum=0.378;QD=13.40;ReadPosRankSum=-0.627;SB=-576.59	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:31,39:70:99:968,0,676:60:99:0.557
chr2	31571242	.	A	.	.	PASS	END=31571280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:96:60
chr2	31571714	.	A	.	.	PASS	END=31571741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	31571742	.	A	.	.	PASS	END=31571785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	31571786	.	A	G	1090.37	PASS	BaseQRankSum=-0.055;DP=88;Dels=0.00;FS=0.802;HRun=0;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=1.065;QD=12.39;ReadPosRankSum=1.880;SB=-548.24	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,43:88:99:1120,0,1268:60:99:0.494
chr2	31571787	.	A	.	.	PASS	END=31571861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	31571862	.	T	.	.	PASS	END=31571891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	31571892	.	A	.	.	PASS	END=31571897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	31572501	.	G	.	.	PASS	END=31572521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr2	31572522	.	A	.	.	PASS	END=31572523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:54:60
chr2	31572524	.	C	.	.	PASS	END=31572547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr2	31572548	.	T	.	.	PASS	END=31572564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr2	31572565	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:52:60
chr2	31572566	.	A	.	.	PASS	END=31572568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr2	31572569	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:50:27:60
chr2	31572570	.	T	.	.	PASS	END=31572644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:80:60
chr2	31572645	.	T	.	.	PASS	END=31572665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr2	31572666	.	T	.	.	PASS	END=31572695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr2	31572696	.	A	.	.	PASS	END=31572698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr2	31572699	.	T	.	.	PASS	END=31572712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	31572713	.	G	.	.	PASS	END=31572721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr2	31572722	.	G	.	.	PASS	END=31572731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	31572732	.	C	T	394.59	PASS	BaseQRankSum=-1.059;DP=25;Dels=0.00;FS=4.419;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-2.330;QD=15.78;ReadPosRankSum=-0.817;SB=-193.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:7,18:25:99:425,0,215:60:99:0.720
chr2	31572733	.	G	.	.	PASS	END=31572748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	31572847	.	C	.	.	PASS	END=31572857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	31572858	.	C	.	.	PASS	END=31572865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	31572866	.	C	.	.	PASS	END=31572870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr2	31572871	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:50:60
chr2	31572872	.	C	.	.	PASS	END=31572902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr2	31572903	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:60:60
chr2	31572904	.	T	.	.	PASS	END=31572913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr2	31572914	.	C	.	.	PASS	END=31572954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:84:60
chr2	31572955	.	G	.	.	PASS	END=31572979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	31572980	.	C	.	.	PASS	END=31573027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	31573028	.	G	.	.	PASS	END=31573096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	31573097	.	A	.	.	PASS	END=31573121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	31573122	.	A	.	.	PASS	END=31573128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	31573129	.	T	.	.	PASS	END=31573140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	31586973	.	C	.	.	PASS	END=31586980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:51:60
chr2	31586981	.	G	.	.	PASS	END=31586994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	31586995	.	G	.	.	PASS	END=31586997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr2	31586998	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:42:60
chr2	31586999	.	A	.	.	PASS	END=31587012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr2	31587013	.	G	.	.	PASS	END=31587035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr2	31587036	.	A	.	.	PASS	END=31587038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	31587039	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:70:60
chr2	31587040	.	T	.	.	PASS	END=31587077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:78:60
chr2	31587078	.	A	.	.	PASS	END=31587135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	31587136	.	T	.	.	PASS	END=31587161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	31588272	.	T	.	.	PASS	END=31588295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	31588296	.	C	.	.	PASS	END=31588397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	31588398	.	A	.	.	PASS	END=31588445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	31588446	.	C	.	.	PASS	END=31588461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	31588791	.	C	.	.	PASS	END=31588837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr2	31588838	.	T	.	.	PASS	END=31588840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr2	31588841	.	C	.	.	PASS	END=31588863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	31588864	.	C	.	.	PASS	END=31588877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	31588878	.	G	.	.	PASS	END=31588904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	31588905	.	C	.	.	PASS	END=31588994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	31588995	.	C	.	.	PASS	END=31589015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	31589016	.	C	.	.	PASS	END=31589026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	31589685	.	G	.	.	PASS	END=31589706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr2	31589707	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:36:60
chr2	31589708	.	C	.	.	PASS	END=31589755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	31589756	.	G	.	.	PASS	END=31589832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	31589833	.	T	.	.	PASS	END=31589857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	31589858	.	C	.	.	PASS	END=31589880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr2	31589881	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:57:60
chr2	31589882	.	T	.	.	PASS	END=31589886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr2	31589887	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:57:60
chr2	31589888	.	T	.	.	PASS	END=31589906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr2	31589907	.	G	.	.	PASS	END=31589911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	31590776	.	A	.	.	PASS	END=31590787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr2	31590788	.	G	.	.	PASS	END=31590793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr2	31590794	.	C	.	.	PASS	END=31590800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr2	31590801	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:38:60
chr2	31590802	.	C	.	.	PASS	END=31590809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr2	31590810	.	G	.	.	PASS	END=31590824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr2	31590825	.	A	.	.	PASS	END=31590860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:92:60
chr2	31590861	.	C	.	.	PASS	END=31590960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:87:60
chr2	31590961	.	A	.	.	PASS	END=31590974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	31591356	.	T	.	.	PASS	END=31591376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	31591377	.	C	.	.	PASS	END=31591414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	31591415	.	T	.	.	PASS	END=31591479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	31591480	.	G	.	.	PASS	END=31591524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	31591525	.	A	.	.	PASS	END=31591527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	31591528	.	T	.	.	PASS	END=31591539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	31591540	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:60
chr2	31591541	.	A	.	.	PASS	END=31591553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr2	31591554	.	A	.	.	PASS	END=31591562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	31591563	.	G	.	.	PASS	END=31591577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	31593170	.	A	.	.	PASS	END=31593182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr2	31593183	.	T	.	.	PASS	END=31593212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr2	31593213	.	A	.	.	PASS	END=31593218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	31593219	.	A	.	.	PASS	END=31593293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	31593294	.	A	.	.	PASS	END=31593345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	31593346	.	T	.	.	PASS	END=31593368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	31593369	.	G	.	.	PASS	END=31593390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	31593391	.	G	.	.	PASS	END=31593395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	31595043	.	C	.	.	PASS	END=31595058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	31595059	.	G	.	.	PASS	END=31595096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	31595097	.	A	.	.	PASS	END=31595155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	31595156	.	A	.	.	PASS	END=31595208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	31595209	.	G	.	.	PASS	END=31595246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	31595247	.	T	.	.	PASS	END=31595274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	31595275	.	G	.	.	PASS	END=31595304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:90:60
chr2	31595305	.	C	.	.	PASS	END=31595314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr2	31596688	.	C	.	.	PASS	END=31596716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	31596717	.	G	.	.	PASS	END=31596788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	31596789	.	C	.	.	PASS	END=31596836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	31596837	.	A	.	.	PASS	END=31596860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	31596861	.	T	.	.	PASS	END=31596864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr2	31596865	.	A	.	.	PASS	END=31596867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr2	31596868	.	A	.	.	PASS	END=31596873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr2	31598195	.	A	.	.	PASS	END=31598208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	31598209	.	G	.	.	PASS	END=31598242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	31598243	.	C	.	.	PASS	END=31598283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	31598284	.	T	.	.	PASS	END=31598371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	31598372	.	C	.	.	PASS	END=31598402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	31598403	.	A	.	.	PASS	END=31598429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	31598430	.	A	.	.	PASS	END=31598442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	31598443	.	A	.	.	PASS	END=31598454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr2	31598455	.	C	.	.	PASS	END=31598471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:69:60
chr2	31599868	.	T	.	.	PASS	END=31599876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr2	31599877	.	C	.	.	PASS	END=31599881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	31599882	.	A	.	.	PASS	END=31599896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	31599897	.	T	.	.	PASS	END=31599916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr2	31599917	.	A	.	.	PASS	END=31599926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr2	31599927	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:62:60
chr2	31599928	.	T	.	.	PASS	END=31599939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr2	31599940	.	G	.	.	PASS	END=31599969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:87:60
chr2	31599970	.	A	.	.	PASS	END=31600000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	31600001	.	C	.	.	PASS	END=31600087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	31600088	.	C	.	.	PASS	END=31600110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	31600111	.	A	.	.	PASS	END=31600146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	31600147	.	A	.	.	PASS	END=31600154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr2	31602682	.	T	.	.	PASS	END=31602702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	31602703	.	C	.	.	PASS	END=31602705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr2	31602706	.	A	.	.	PASS	END=31602708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:57:60
chr2	31602709	.	C	.	.	PASS	END=31602738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr2	31602739	.	G	.	.	PASS	END=31602752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr2	31602753	.	C	.	.	PASS	END=31602796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	31602797	.	T	.	.	PASS	END=31602851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	31602852	.	A	.	.	PASS	END=31602893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:77:60
chr2	31604448	.	A	.	.	PASS	END=31604470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	31604471	.	T	.	.	PASS	END=31604620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	31604621	.	A	.	.	PASS	END=31604635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	31604636	.	A	.	.	PASS	END=31604643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	31605816	.	C	.	.	PASS	END=31605830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	31605831	.	T	.	.	PASS	END=31605844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr2	31605845	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:21:60
chr2	31605846	.	T	.	.	PASS	END=31605862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr2	31605863	.	T	.	.	PASS	END=31605873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr2	31605874	.	G	.	.	PASS	END=31605880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr2	31605881	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:45:60
chr2	31605882	.	T	.	.	PASS	END=31605888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr2	31605889	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:44:60
chr2	31605890	.	C	.	.	PASS	END=31605896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr2	31605897	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:42:60
chr2	31605898	.	C	.	.	PASS	END=31605912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr2	31605913	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:62:60
chr2	31605914	.	G	.	.	PASS	END=31605918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	31605919	.	C	.	.	PASS	END=31606011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	31606012	.	G	.	.	PASS	END=31606025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	31606026	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:55:60
chr2	31606027	.	G	.	.	PASS	END=31606056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr2	31606057	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:66:60
chr2	31606058	.	A	.	.	PASS	END=31606067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr2	31606068	.	A	.	.	PASS	END=31606069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr2	31606570	.	T	.	.	PASS	END=31606583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	31606584	.	C	.	.	PASS	END=31606590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr2	31606591	.	T	.	.	PASS	END=31606592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr2	31606593	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:69:60
chr2	31606594	.	A	.	.	PASS	END=31606626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr2	31606627	.	G	.	.	PASS	END=31606635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr2	31606636	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:60:60
chr2	31606637	.	T	.	.	PASS	END=31606654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr2	31606655	.	G	.	.	PASS	END=31606674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	31606675	.	T	.	.	PASS	END=31606745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	31606746	.	C	.	.	PASS	END=31606764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	31609229	.	A	.	.	PASS	END=31609236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr2	31609237	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:72:60
chr2	31609238	.	C	.	.	PASS	END=31609240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr2	31609241	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:36:60
chr2	31609242	.	C	.	.	PASS	END=31609268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr2	31609269	.	C	.	.	PASS	END=31609315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	31609316	.	G	.	.	PASS	END=31609357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:87:60
chr2	31609358	.	C	.	.	PASS	END=31609389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	31609390	.	C	.	.	PASS	END=31609447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	31609448	.	A	C	2313.14	PASS	DP=80;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=28.91;SB=-1299.20	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,80:80:99:2346,175,0:60:99:1.000
chr2	31609449	.	T	.	.	PASS	END=31609472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	31610626	.	A	.	.	PASS	END=31610629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	31610630	.	A	.	.	PASS	END=31610631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:35:60
chr2	31610632	.	T	.	.	PASS	END=31610634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	31610635	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:36:3:60
chr2	31610636	.	A	.	.	PASS	END=31610642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr2	31610643	.	A	.	.	PASS	END=31610645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr2	31610646	.	C	T	436.81	PASS	BaseQRankSum=0.420;DP=50;Dels=0.00;FS=5.254;HRun=0;HaplotypeScore=7.6276;MQ=60;MQ0=0;MQRankSum=-0.967;QD=8.74;ReadPosRankSum=-0.909;SB=-209.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,22:50:99:467,0,619:60:99:0.440
chr2	31610647	.	G	.	.	PASS	END=31610685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:87:60
chr2	31610686	.	T	.	.	PASS	END=31610787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	31610788	.	T	.	.	PASS	END=31610800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	31610801	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:69:60
chr2	31610802	.	C	.	.	PASS	END=31610814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr2	31611042	.	T	.	.	PASS	END=31611104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	31611105	.	C	.	.	PASS	END=31611163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	31611164	.	A	.	.	PASS	END=31611191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	31611192	.	T	.	.	PASS	END=31611212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:85:60
chr2	31620475	.	A	.	.	PASS	END=31620573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	31620574	.	C	.	.	PASS	END=31620593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	31620594	.	T	.	.	PASS	END=31620627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	31620628	.	G	.	.	PASS	END=31620641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	31620642	.	T	.	.	PASS	END=31620646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr2	31621388	.	C	.	.	PASS	END=31621430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	31621431	.	G	.	.	PASS	END=31621459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	31621460	.	C	.	.	PASS	END=31621507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	31621508	.	T	.	.	PASS	END=31621571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:88:60
chr2	31621572	.	G	.	.	PASS	END=31621588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	31621589	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:76:60
chr2	31621590	.	A	.	.	PASS	END=31621597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	31621598	.	T	C	532.33	PASS	BaseQRankSum=-0.144;DP=49;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=15.3491;MQ=60;MQ0=0;MQRankSum=0.268;QD=10.86;ReadPosRankSum=-0.062;SB=-232.59	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:23,25:49:99:562,0,574:60:99:0.521
chr2	31621599	.	G	.	.	PASS	END=31621606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr2	31621607	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:68:60
chr2	31621608	.	C	.	.	PASS	END=31621616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr2	31624035	.	G	.	.	PASS	END=31624092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	31624093	.	G	.	.	PASS	END=31624164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	31624165	.	G	.	.	PASS	END=31624214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:84:60
chr2	31624215	.	C	.	.	PASS	END=31624242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:60
chr2	31624243	.	C	.	.	PASS	END=31624245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	31625863	.	G	.	.	PASS	END=31625982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	31625983	.	C	.	.	PASS	END=31625993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:89:60
chr2	31625994	.	G	.	.	PASS	END=31626008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr2	31626009	.	C	.	.	PASS	END=31626036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr2	31626037	.	G	.	.	PASS	END=31626044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	31626045	.	G	C	300.90	PASS	BaseQRankSum=1.061;DP=31;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=-1.461;QD=9.71;ReadPosRankSum=0.060;SB=-82.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:18,13:31:99:331,0,475:60:99:0.419
chr2	31626046	.	G	.	.	PASS	END=31626053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr2	31626054	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:51:60
chr2	31626055	.	C	.	.	PASS	END=31626061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	31628722	.	C	.	.	PASS	END=31628738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr2	31628739	.	C	.	.	PASS	END=31628778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	31628779	.	T	.	.	PASS	END=31628801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	31628802	.	G	.	.	PASS	END=31628881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	31637440	.	T	.	.	PASS	END=31637482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	31637483	.	C	.	.	PASS	END=31637549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	31637550	.	C	.	.	PASS	END=31637579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	31637580	.	A	.	.	PASS	END=31637583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr2	31751265	.	T	.	.	PASS	END=31751368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	31754336	.	G	.	.	PASS	END=31754376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	31754377	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:63:60
chr2	31754378	.	T	.	.	PASS	END=31754392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	31754393	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:70:60
chr2	31754394	.	T	.	.	PASS	END=31754467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	31754468	.	C	.	.	PASS	END=31754474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr2	31754475	.	T	.	.	PASS	END=31754485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	31754486	.	C	.	.	PASS	END=31754500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr2	31754501	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:33:60
chr2	31754502	.	T	.	.	PASS	END=31754523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr2	31754524	.	C	.	.	PASS	END=31754525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:30:60
chr2	31754526	.	A	.	.	PASS	END=31754527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr2	31756440	.	C	.	.	PASS	END=31756489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	31756490	.	T	.	.	PASS	END=31756516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	31756517	.	C	.	.	PASS	END=31756542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	31758672	.	C	.	.	PASS	END=31758689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:96:60
chr2	31758690	.	T	.	.	PASS	END=31758709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	31758710	.	G	.	.	PASS	END=31758795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	31758796	.	G	.	.	PASS	END=31758830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:91:60
chr2	31758831	.	A	.	.	PASS	END=31758836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	31805689	.	C	.	.	PASS	END=31805705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	31805706	.	G	C	966.67	PASS	BaseQRankSum=-0.604;DP=49;Dels=0.00;FS=2.734;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=0.259;QD=19.73;ReadPosRankSum=-0.668;SB=-75.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:17,31:49:99:997,0,524:60:99:0.646
chr2	31805707	.	G	.	.	PASS	END=31805728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	31805729	.	G	.	.	PASS	END=31805757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	31805758	.	C	.	.	PASS	END=31805834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	31805835	.	G	.	.	PASS	END=31805880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	31805880	.	A	AG	4210.80	PASS	DP=104;FS=0.000;HRun=2;HaplotypeScore=72.1389;MQ=60;MQ0=0;QD=40.49;SB=-1200.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,104:104:99:4211,313,0:60:99:1.000
chr2	31805881	.	G	.	.	PASS	END=31805914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	31805915	.	C	.	.	PASS	END=31805947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	31805948	.	T	.	.	PASS	END=31805964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	31805965	.	T	.	.	PASS	END=31805969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr2	32093428	.	C	.	.	LowGQX	END=32093549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:33
chr2	32093550	.	C	.	.	LowGQX	.	GT	./.
chr2	32093551	.	T	.	.	LowGQX	END=32093562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:33
chr2	32093563	.	T	.	.	LowGQX	.	GT	./.
chr2	32094865	.	G	.	.	LowGQX	END=32095023	GT	./.
chr2	32108393	.	T	.	.	LowGQX	END=32108543	GT	./.
chr2	32117059	.	A	.	.	LowGQX	END=32117205	GT	./.
chr2	32118305	.	C	.	.	LowGQX	END=32118404	GT	./.
chr2	32142993	.	A	.	.	LowGQX	END=32143108	GT	./.
chr2	32145865	.	A	.	.	LowGQX	END=32145981	GT	./.
chr2	32148708	.	A	.	.	LowGQX	END=32148807	GT	./.
chr2	32157121	.	A	.	.	LowGQX	END=32157220	GT	./.
chr2	32168362	.	A	.	.	LowGQX	END=32168461	GT	./.
chr2	32188226	.	A	.	.	LowGQX	END=32188325	GT	./.
chr2	32235237	.	C	.	.	LowGQX	END=32235336	GT	./.
chr2	32248494	.	C	.	.	LowGQX	END=32248593	GT	./.
chr2	32248746	.	C	.	.	LowGQX	END=32248877	GT	./.
chr2	32249181	.	T	.	.	LowGQX	END=32249339	GT	./.
chr2	32254661	.	A	.	.	LowGQX	END=32254807	GT	./.
chr2	32264322	.	T	.	.	LowGQX	END=32264369	GT	./.
chr2	32264370	.	T	.	.	LowGQX	END=32264421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32264458	.	A	.	.	LowGQX	END=32264468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	32264469	.	G	A	9.30	LowGQX	BaseQRankSum=-0.736;DP=3;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr2	32264470	.	A	.	.	LowGQX	END=32264540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	32264541	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	32264542	.	C	.	.	LowGQX	END=32264557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	32288850	.	C	.	.	PASS	END=32288896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	32288897	.	G	.	.	PASS	END=32288980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	32288981	.	T	.	.	PASS	END=32289038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	32289039	.	A	.	.	PASS	END=32289132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	32289133	.	T	.	.	PASS	END=32289209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	32289210	.	G	.	.	PASS	END=32289283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:84:60
chr2	32289284	.	C	.	.	PASS	END=32289296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr2	32289297	.	A	.	.	PASS	END=32289303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	32289304	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:69:60
chr2	32289305	.	G	.	.	PASS	END=32289306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr2	32289307	.	A	.	.	PASS	END=32289315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr2	32289316	.	G	.	.	PASS	END=32289317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr2	32289318	.	A	.	.	PASS	END=32289327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr2	32289328	.	C	.	.	PASS	END=32289330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr2	32289331	.	G	.	.	PASS	END=32289333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr2	32289334	.	G	.	.	PASS	END=32289339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	32289340	.	G	.	.	PASS	END=32289343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	32289344	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	32289345	.	G	.	.	PASS	END=32289348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	32289349	.	C	.	.	LowGQX	END=32289350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:60
chr2	32289351	.	G	.	.	PASS	END=32289354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	32289355	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	32289356	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr2	32289357	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr2	32289358	.	A	.	51.06	LowGQX	DP=12;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:9:12:21.06:60:21
chr2	32289359	.	G	.	.	PASS	END=32289360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	32289361	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr2	32289362	.	G	.	.	PASS	END=32289363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	32289364	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:1:60
chr2	32289365	.	G	.	.	PASS	END=32289366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr2	32312510	.	T	.	.	PASS	END=32312519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:59
chr2	32312520	.	A	.	.	PASS	END=32312591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:59
chr2	32312592	.	T	.	.	PASS	END=32312637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:59
chr2	32312638	.	A	.	.	PASS	END=32312670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr2	32312671	.	C	.	.	PASS	END=32312676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr2	32312677	.	A	.	.	PASS	END=32312684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	32312685	.	A	.	.	PASS	END=32312698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	32314540	.	A	.	.	PASS	END=32314668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	32314669	.	T	.	.	PASS	END=32314700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	32314701	.	G	.	.	PASS	END=32314725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	32323814	.	C	.	.	PASS	END=32323850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	32323851	.	T	.	.	PASS	END=32323863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	32323864	.	G	.	.	PASS	END=32324011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	32339656	.	A	.	.	PASS	END=32339740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr2	32339741	.	A	.	.	PASS	END=32339831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr2	32339832	.	A	.	.	PASS	END=32339899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr2	32339900	.	C	.	.	PASS	END=32339945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	32340720	.	A	.	.	PASS	END=32340726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	32340727	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	32340728	.	A	.	.	PASS	END=32340736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	32340737	.	T	.	.	PASS	END=32340744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	32340745	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr2	32340746	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr2	32340747	.	T	.	.	LowGQX	END=32340754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr2	32340755	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr2	32340756	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	32340757	.	T	.	.	PASS	END=32340758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	32340759	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	32340760	.	T	.	.	PASS	END=32340761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	32340762	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	32340763	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr2	32340764	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:45:60
chr2	32340765	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:9:60
chr2	32340766	.	T	.	.	PASS	END=32340775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	32340776	.	T	.	.	PASS	END=32340777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr2	32340778	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:17:60
chr2	32340779	.	G	.	.	PASS	END=32340793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	32340794	.	A	.	.	PASS	END=32340808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	32340809	.	C	.	.	PASS	END=32340824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr2	32340825	.	C	.	.	PASS	END=32340955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr2	32341137	.	A	.	.	PASS	END=32341149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr2	32341150	.	G	.	.	PASS	END=32341179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	32341180	.	T	.	.	PASS	END=32341210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	32341211	.	A	.	.	PASS	END=32341295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	32341296	.	T	.	.	PASS	END=32341327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	32341328	.	A	.	.	PASS	END=32341332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	32351966	.	C	.	.	PASS	END=32352050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	32352051	.	T	.	.	PASS	END=32352076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	32352077	.	G	.	.	PASS	END=32352100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr2	32352101	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:46:60
chr2	32352102	.	T	.	.	PASS	END=32352134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	32352135	.	G	.	.	PASS	END=32352142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr2	32353426	.	T	.	.	PASS	END=32353446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	32353447	.	A	.	.	PASS	END=32353579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	32353580	.	T	.	.	PASS	END=32353599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	32361581	.	C	.	.	PASS	END=32361604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr2	32361605	.	G	.	.	PASS	END=32361622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	32361623	.	T	.	.	PASS	END=32361754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	32361755	.	C	.	.	PASS	END=32361758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	32361895	.	A	.	.	PASS	END=32361999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	32362000	.	G	.	.	PASS	END=32362009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	32362010	.	A	.	.	PASS	END=32362079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	32362079	.	G	GTATA	1914.09	PASS	BaseQRankSum=1.244;DP=85;FS=8.776;HRun=0;HaplotypeScore=57.5662;MQ=60;MQ0=0;MQRankSum=-0.701;QD=22.52;ReadPosRankSum=0.371;SB=-465.66	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:51,32:85:99:1953,0,2315:60:99:0.386
chr2	32362080	.	T	.	.	PASS	END=32362088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	32362127	.	T	.	.	PASS	END=32362211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	32362212	.	T	.	.	PASS	END=32362229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	32362230	.	C	.	.	PASS	END=32362308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr2	32366922	.	A	.	.	PASS	END=32366932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr2	32366933	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:65:60
chr2	32366934	.	A	.	.	PASS	END=32367024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:96:60
chr2	32367025	.	T	.	.	PASS	END=32367066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr2	32368354	.	A	.	.	PASS	END=32368487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	32368488	.	A	.	.	PASS	END=32368535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:87:60
chr2	32369955	.	A	.	.	PASS	END=32370037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	32370038	.	C	.	.	PASS	END=32370072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	32370073	.	C	.	.	PASS	END=32370089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	32370090	.	A	.	.	PASS	END=32370119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr2	32370120	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:46:60
chr2	32370121	.	C	.	.	PASS	END=32370127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	32372236	.	T	.	.	PASS	END=32372336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	32372337	.	T	.	.	PASS	END=32372347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	32372348	.	A	.	.	PASS	END=32372358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	32372359	.	C	.	.	PASS	END=32372378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	32379392	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:99:60
chr2	32379393	.	C	.	.	PASS	END=32379417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	32379418	.	T	.	.	PASS	END=32379543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	32379544	.	C	.	.	PASS	END=32379564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	32379565	.	A	.	.	PASS	END=32379569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	32379570	.	A	.	.	PASS	END=32379615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	32379616	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:81:60
chr2	32390922	.	C	.	.	LowGQX	END=32391021	GT	./.
chr2	32396350	.	T	.	.	LowGQX	END=32396449	GT	./.
chr2	32399125	.	T	.	.	LowGQX	END=32399224	GT	./.
chr2	32400306	.	T	.	.	LowGQX	END=32400459	GT	./.
chr2	32402504	.	C	.	.	LowGQX	END=32402665	GT	./.
chr2	32409270	.	T	.	.	LowGQX	END=32409424	GT	./.
chr2	32412212	.	G	.	.	LowGQX	END=32412311	GT	./.
chr2	32417396	.	T	.	.	LowGQX	END=32417495	GT	./.
chr2	32417955	.	G	.	.	LowGQX	END=32418054	GT	./.
chr2	32418956	.	A	.	.	LowGQX	END=32419055	GT	./.
chr2	32422388	.	T	.	.	LowGQX	END=32422487	GT	./.
chr2	32422774	.	A	.	.	LowGQX	END=32422875	GT	./.
chr2	32422876	.	T	.	.	LowGQX	END=32422889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32422890	.	A	.	.	LowGQX	.	GT	./.
chr2	32422891	.	A	.	.	LowGQX	END=32422897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32429657	.	A	.	.	LowGQX	END=32429763	GT	./.
chr2	32431929	.	T	.	.	LowGQX	END=32431951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32431952	.	C	.	.	LowGQX	.	GT	./.
chr2	32431953	.	A	.	.	LowGQX	END=32431961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32431962	.	C	.	.	LowGQX	.	GT	./.
chr2	32431963	.	A	.	.	LowGQX	END=32431964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32431965	.	C	.	.	LowGQX	.	GT	./.
chr2	32431966	.	C	.	.	LowGQX	END=32431983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32431984	.	G	.	.	LowGQX	END=32431985	GT	./.
chr2	32431986	.	A	.	.	LowGQX	END=32432026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32432027	.	C	.	.	LowGQX	.	GT	./.
chr2	32432028	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32434547	.	T	.	.	LowGQX	END=32434646	GT	./.
chr2	32445280	.	A	.	.	LowGQX	END=32445784	GT	./.
chr2	32449540	.	A	.	.	LowGQX	END=32449836	GT	./.
chr2	32460468	.	A	.	.	LowGQX	END=32460639	GT	./.
chr2	32461313	.	T	.	.	LowGQX	END=32461412	GT	./.
chr2	32463199	.	A	.	.	LowGQX	END=32463388	GT	./.
chr2	32466039	.	C	.	.	LowGQX	END=32466249	GT	./.
chr2	32474674	.	A	.	.	LowGQX	END=32476672	GT	./.
chr2	32477486	.	A	.	.	LowGQX	END=32477750	GT	./.
chr2	32481795	.	T	.	.	LowGQX	END=32481894	GT	./.
chr2	32503155	.	C	.	.	LowGQX	END=32503314	GT	./.
chr2	32515550	.	A	.	.	LowGQX	END=32515707	GT	./.
chr2	32517244	.	A	.	.	LowGQX	END=32517419	GT	./.
chr2	32523241	.	T	.	.	LowGQX	END=32523391	GT	./.
chr2	32526449	.	A	.	.	LowGQX	END=32526566	GT	./.
chr2	32530556	.	A	.	.	LowGQX	.	GT	./.
chr2	32530557	.	G	.	.	LowGQX	END=32530559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32530560	.	G	.	.	LowGQX	.	GT	./.
chr2	32530561	.	T	.	.	LowGQX	END=32530563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32530564	.	G	.	.	LowGQX	.	GT	./.
chr2	32530565	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32530566	.	T	.	.	LowGQX	.	GT	./.
chr2	32530567	.	G	.	.	LowGQX	END=32530575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32530576	.	G	.	.	LowGQX	.	GT	./.
chr2	32530577	.	C	.	.	LowGQX	END=32530580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32530581	.	C	.	.	LowGQX	.	GT	./.
chr2	32530582	.	T	.	.	LowGQX	END=32530586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32530587	.	T	.	.	LowGQX	.	GT	./.
chr2	32530588	.	G	.	.	LowGQX	END=32530589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32530590	.	T	.	.	LowGQX	END=32530697	GT	./.
chr2	32532146	.	T	.	.	LowGQX	END=32532245	GT	./.
chr2	32582229	.	G	.	.	LowGQX	END=32582327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	32582328	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	32582329	.	G	.	.	LowGQX	END=32582349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	32582350	.	T	.	.	LowGQX	.	GT	./.
chr2	32582351	.	G	.	.	LowGQX	END=32582352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32582353	.	T	.	.	LowGQX	.	GT	./.
chr2	32582354	.	C	.	.	LowGQX	END=32582383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32582384	.	T	.	.	LowGQX	.	GT	./.
chr2	32582385	.	C	.	.	LowGQX	END=32582391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32582392	.	T	.	.	LowGQX	.	GT	./.
chr2	32582393	.	G	.	.	LowGQX	END=32582398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32582399	.	T	.	.	LowGQX	.	GT	./.
chr2	32582400	.	G	.	.	LowGQX	END=32582401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32582402	.	T	.	.	LowGQX	.	GT	./.
chr2	32582403	.	G	.	.	LowGQX	END=32582412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32582413	.	T	.	.	LowGQX	.	GT	./.
chr2	32582414	.	G	.	.	LowGQX	END=32582417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32582418	.	G	.	.	LowGQX	.	GT	./.
chr2	32582419	.	C	.	.	LowGQX	END=32582421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32582422	.	T	.	.	LowGQX	.	GT	./.
chr2	32582423	.	G	.	.	LowGQX	END=32582430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32582431	.	G	.	.	LowGQX	.	GT	./.
chr2	32582432	.	A	.	.	LowGQX	END=32582437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32582438	.	T	.	.	LowGQX	.	GT	./.
chr2	32582439	.	G	.	.	LowGQX	END=32582459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32582460	.	T	.	.	LowGQX	END=32582558	GT	./.
chr2	32602655	.	G	.	.	LowGQX	END=32602837	GT	./.
chr2	32605220	.	G	.	.	LowGQX	END=32605358	GT	./.
chr2	32613817	.	G	.	.	LowGQX	END=32614011	GT	./.
chr2	32617106	.	G	.	.	LowGQX	END=32617114	GT	./.
chr2	32617115	.	T	.	.	LowGQX	END=32617116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32617117	.	T	.	.	LowGQX	.	GT	./.
chr2	32617118	.	A	.	.	LowGQX	END=32617130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32617131	.	C	.	.	LowGQX	.	GT	./.
chr2	32617132	.	A	.	.	LowGQX	END=32617146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32617147	.	A	.	.	LowGQX	.	GT	./.
chr2	32617148	.	C	.	.	LowGQX	END=32617158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32617159	.	C	.	.	LowGQX	.	GT	./.
chr2	32617160	.	A	.	.	LowGQX	END=32617161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32617162	.	G	.	.	LowGQX	.	GT	./.
chr2	32617163	.	T	.	.	LowGQX	END=32617202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32617203	.	T	.	.	LowGQX	.	GT	./.
chr2	32617204	.	G	.	.	LowGQX	END=32617208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32617209	.	T	.	.	LowGQX	.	GT	./.
chr2	32617210	.	T	.	.	LowGQX	END=32617218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32620570	.	A	.	.	LowGQX	END=32620573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32620574	.	T	.	.	LowGQX	.	GT	./.
chr2	32620575	.	G	.	.	LowGQX	END=32620579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32620580	.	C	.	.	LowGQX	.	GT	./.
chr2	32620581	.	T	.	.	LowGQX	END=32620583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32620584	.	C	.	.	LowGQX	.	GT	./.
chr2	32620585	.	T	.	.	LowGQX	END=32620604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32620605	.	C	.	.	LowGQX	.	GT	./.
chr2	32620606	.	A	.	.	LowGQX	END=32620625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32620626	.	A	.	.	LowGQX	.	GT	./.
chr2	32620627	.	T	.	.	LowGQX	END=32620629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32620630	.	C	.	.	LowGQX	.	GT	./.
chr2	32620631	.	T	.	.	LowGQX	END=32620645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32620646	.	C	.	.	LowGQX	.	GT	./.
chr2	32620647	.	T	.	.	LowGQX	END=32620669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32626230	.	G	.	.	LowGQX	END=32626328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32626329	.	A	.	.	LowGQX	END=32626453	GT	./.
chr2	32626530	.	G	.	.	LowGQX	END=32626691	GT	./.
chr2	32631546	.	T	.	.	LowGQX	END=32631645	GT	./.
chr2	32639836	.	G	.	.	LowGQX	END=32641231	GT	./.
chr2	32654173	.	T	.	.	LowGQX	END=32654363	GT	./.
chr2	32655932	.	G	.	.	LowGQX	END=32655933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	32655934	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	32655935	.	G	.	.	LowGQX	END=32655967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	32655968	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	32655969	.	A	.	.	LowGQX	END=32656003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	32656004	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	32656005	.	A	.	.	LowGQX	END=32656025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	32656026	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	32656027	.	A	.	.	LowGQX	END=32656040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	32656041	.	C	A	4.99	LowGQ;LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.03	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:19.67:33,0,20:60:5:0.333
chr2	32656042	.	A	.	.	LowGQX	END=32656057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32656058	.	C	.	.	LowGQX	.	GT	./.
chr2	32656059	.	A	.	.	LowGQX	END=32656064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32656065	.	A	.	.	LowGQX	.	GT	./.
chr2	32656066	.	A	.	.	LowGQX	END=32656074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32656075	.	A	.	.	LowGQX	END=32656158	GT	./.
chr2	32658711	.	G	.	.	LowGQX	END=32658796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	32658797	.	T	.	.	LowGQX	END=32658872	GT	./.
chr2	32660559	.	T	.	.	LowGQX	END=32660658	GT	./.
chr2	32661120	.	G	.	.	LowGQX	END=32661122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32661123	.	C	.	.	LowGQX	.	GT	./.
chr2	32661124	.	T	.	.	LowGQX	END=32661125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32661126	.	A	.	.	LowGQX	.	GT	./.
chr2	32661127	.	G	.	.	LowGQX	END=32661129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32661130	.	T	.	.	LowGQX	END=32661131	GT	./.
chr2	32661132	.	T	.	.	LowGQX	END=32661137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32661138	.	T	.	.	LowGQX	.	GT	./.
chr2	32661139	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32661140	.	T	.	.	LowGQX	.	GT	./.
chr2	32661141	.	T	.	.	LowGQX	END=32661142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32661143	.	G	.	.	LowGQX	END=32661144	GT	./.
chr2	32661145	.	A	.	.	LowGQX	END=32661192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32661193	.	G	.	.	LowGQX	.	GT	./.
chr2	32661194	.	C	.	.	LowGQX	END=32661198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	32661199	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	32661200	.	T	.	.	LowGQX	END=32661213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	32661214	.	C	.	.	LowGQX	END=32661215	GT	./.
chr2	32661216	.	G	.	.	LowGQX	END=32661223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32661224	.	G	.	.	LowGQX	.	GT	./.
chr2	32661225	.	A	.	.	LowGQX	END=32661226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32661227	.	G	.	.	LowGQX	.	GT	./.
chr2	32661228	.	T	.	.	LowGQX	END=32661229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32661230	.	A	.	.	LowGQX	.	GT	./.
chr2	32661231	.	A	.	.	LowGQX	END=32661238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32661239	.	C	.	.	LowGQX	.	GT	./.
chr2	32661240	.	A	.	.	LowGQX	END=32661252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32664575	.	G	.	.	LowGQX	END=32664754	GT	./.
chr2	32666396	.	G	.	.	LowGQX	.	GT	./.
chr2	32666397	.	G	.	.	LowGQX	END=32666398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32666399	.	A	.	.	LowGQX	END=32666401	GT	./.
chr2	32666402	.	A	.	.	LowGQX	END=32666409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32666410	.	A	.	.	LowGQX	.	GT	./.
chr2	32666411	.	T	.	.	LowGQX	END=32666416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32666417	.	G	.	.	LowGQX	.	GT	./.
chr2	32666418	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32666419	.	A	.	.	LowGQX	END=32666420	GT	./.
chr2	32666421	.	G	.	.	LowGQX	END=32666427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32666428	.	C	.	.	LowGQX	END=32666430	GT	./.
chr2	32666431	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32666432	.	T	.	.	LowGQX	.	GT	./.
chr2	32666433	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32666434	.	G	.	.	LowGQX	.	GT	./.
chr2	32666435	.	C	.	.	LowGQX	END=32666438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32666439	.	C	.	.	LowGQX	.	GT	./.
chr2	32666440	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32666441	.	T	.	.	LowGQX	END=32666530	GT	./.
chr2	32667132	.	G	.	.	LowGQX	END=32667294	GT	./.
chr2	32667391	.	G	.	.	LowGQX	END=32667497	GT	./.
chr2	32667498	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32667499	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	32667500	.	C	.	.	LowGQX	END=32667523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32668558	.	G	.	.	LowGQX	END=32668657	GT	./.
chr2	32670588	.	G	.	.	LowGQX	END=32670736	GT	./.
chr2	32673862	.	G	.	.	LowGQX	END=32673996	GT	./.
chr2	32678875	.	G	.	.	LowGQX	END=32679010	GT	./.
chr2	32688261	.	G	.	.	LowGQX	END=32688449	GT	./.
chr2	32689576	.	G	.	.	LowGQX	END=32689891	GT	./.
chr2	32690132	.	G	.	.	LowGQX	END=32690232	GT	./.
chr2	32692592	.	G	.	.	LowGQX	END=32692665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	32692666	.	A	.	.	LowGQX	END=32692807	GT	./.
chr2	32692970	.	G	.	.	LowGQX	END=32693179	GT	./.
chr2	32693504	.	G	.	.	LowGQX	END=32693547	GT	./.
chr2	32693548	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32693549	.	T	.	.	LowGQX	.	GT	./.
chr2	32693550	.	T	.	.	LowGQX	END=32693585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32693586	.	G	.	.	LowGQX	.	GT	./.
chr2	32693587	.	T	.	.	LowGQX	END=32693592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32693593	.	T	.	.	LowGQX	.	GT	./.
chr2	32693594	.	T	.	.	LowGQX	END=32693615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32693616	.	T	.	.	LowGQX	.	GT	./.
chr2	32693617	.	G	.	.	LowGQX	END=32693634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32693635	.	T	.	.	LowGQX	.	GT	./.
chr2	32693636	.	T	.	.	LowGQX	END=32693649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32693650	.	G	.	.	LowGQX	.	GT	./.
chr2	32693651	.	A	.	.	LowGQX	END=32693656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32693657	.	T	.	.	LowGQX	.	GT	./.
chr2	32693658	.	T	.	.	LowGQX	END=32693662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32693663	.	T	.	.	LowGQX	.	GT	./.
chr2	32693664	.	A	.	.	LowGQX	END=32693684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32693685	.	T	.	.	LowGQX	.	GT	./.
chr2	32693686	.	C	.	.	LowGQX	END=32693698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32693699	.	A	.	.	LowGQX	END=32693701	GT	./.
chr2	32693702	.	G	.	.	LowGQX	END=32693756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32693757	.	A	.	.	LowGQX	.	GT	./.
chr2	32693758	.	G	.	.	LowGQX	END=32693848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32693849	.	A	G	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	32693850	.	T	.	.	LowGQX	END=32693851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	32694462	.	G	.	.	LowGQX	END=32694467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32694468	.	T	.	.	LowGQX	.	GT	./.
chr2	32694469	.	C	.	.	LowGQX	END=32694470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32694471	.	G	.	.	LowGQX	.	GT	./.
chr2	32694472	.	T	.	.	LowGQX	END=32694474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32694475	.	C	.	.	LowGQX	.	GT	./.
chr2	32694476	.	T	.	.	LowGQX	END=32694483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32694484	.	T	.	.	LowGQX	END=32694676	GT	./.
chr2	32694677	.	G	.	.	LowGQX	END=32694682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32695235	.	G	.	.	LowGQX	END=32695414	GT	./.
chr2	32696081	.	G	.	.	LowGQX	END=32696192	GT	./.
chr2	32698139	.	A	.	.	LowGQX	END=32698307	GT	./.
chr2	32701280	.	G	.	.	LowGQX	END=32701459	GT	./.
chr2	32702435	.	G	.	.	LowGQX	END=32702651	GT	./.
chr2	32703702	.	G	.	.	LowGQX	END=32703901	GT	./.
chr2	32704529	.	G	.	.	LowGQX	END=32704685	GT	./.
chr2	32706387	.	G	.	.	LowGQX	END=32706521	GT	./.
chr2	32707496	.	G	.	.	LowGQX	END=32707501	GT	./.
chr2	32707502	.	A	.	.	LowGQX	END=32707538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32707539	.	G	.	.	LowGQX	.	GT	./.
chr2	32707540	.	G	.	.	LowGQX	END=32707572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32707573	.	T	.	.	LowGQX	.	GT	./.
chr2	32707574	.	G	.	.	LowGQX	END=32707650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32710709	.	G	.	.	LowGQX	END=32710826	GT	./.
chr2	32712713	.	G	.	.	LowGQX	END=32712868	GT	./.
chr2	32713604	.	T	.	.	LowGQX	END=32713781	GT	./.
chr2	32715107	.	G	.	.	LowGQX	END=32715218	GT	./.
chr2	32716491	.	G	.	.	LowGQX	END=32716625	GT	./.
chr2	32718606	.	G	.	.	LowGQX	END=32718734	GT	./.
chr2	32724613	.	G	.	.	LowGQX	END=32724619	GT	./.
chr2	32724620	.	T	.	.	LowGQX	END=32724719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32724720	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	32724721	.	T	.	.	LowGQX	END=32724808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32724809	.	T	.	.	LowGQX	END=32725094	GT	./.
chr2	32725095	.	G	.	.	LowGQX	END=32725140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32725141	.	G	.	.	LowGQX	.	GT	./.
chr2	32725142	.	C	.	.	LowGQX	END=32725148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32725149	.	A	.	.	LowGQX	END=32725150	GT	./.
chr2	32725151	.	T	.	.	LowGQX	END=32725176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32726779	.	G	.	.	LowGQX	END=32726813	GT	./.
chr2	32726814	.	C	.	.	LowGQX	END=32726944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	32726945	.	T	.	.	LowGQX	END=32726955	GT	./.
chr2	32727860	.	A	.	.	LowGQX	END=32727959	GT	./.
chr2	32728108	.	G	.	.	LowGQX	END=32728303	GT	./.
chr2	32730071	.	G	.	.	LowGQX	END=32730272	GT	./.
chr2	32733046	.	G	.	.	LowGQX	END=32733058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32733059	.	C	.	.	LowGQX	.	GT	./.
chr2	32733060	.	A	.	.	LowGQX	END=32733064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32733065	.	C	.	.	LowGQX	END=32733309	GT	./.
chr2	32733310	.	C	.	.	LowGQX	END=32733326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32734794	.	T	.	.	LowGQX	END=32735049	GT	./.
chr2	32735050	.	G	.	.	LowGQX	END=32735063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	32735592	.	G	.	.	LowGQX	END=32735701	GT	./.
chr2	32737999	.	G	.	.	LowGQX	END=32738002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32738003	.	T	.	.	LowGQX	.	GT	./.
chr2	32738004	.	C	.	.	LowGQX	END=32738009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32738010	.	T	.	.	LowGQX	.	GT	./.
chr2	32738011	.	T	.	.	LowGQX	END=32738022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32738023	.	T	.	.	LowGQX	.	GT	./.
chr2	32738024	.	T	.	.	LowGQX	END=32738057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32738058	.	A	.	.	LowGQX	.	GT	./.
chr2	32738059	.	G	.	.	LowGQX	END=32738115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32738116	.	T	.	.	LowGQX	END=32738139	GT	./.
chr2	32738140	.	G	.	.	LowGQX	END=32738221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	32740056	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32740057	.	G	.	.	LowGQX	.	GT	./.
chr2	32740058	.	T	.	.	LowGQX	END=32740062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32740063	.	T	.	.	LowGQX	.	GT	./.
chr2	32740064	.	T	.	.	LowGQX	END=32740077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32740078	.	G	.	.	LowGQX	.	GT	./.
chr2	32740079	.	T	.	.	LowGQX	END=32740129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32740130	.	T	.	.	LowGQX	.	GT	./.
chr2	32740131	.	C	.	.	LowGQX	END=32740132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32740133	.	A	.	.	LowGQX	.	GT	./.
chr2	32740134	.	T	.	.	LowGQX	END=32740144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32740145	.	C	.	.	LowGQX	.	GT	./.
chr2	32740146	.	A	.	.	LowGQX	END=32740151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32740152	.	A	.	.	LowGQX	.	GT	./.
chr2	32740153	.	C	.	.	LowGQX	END=32740216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32740217	.	C	.	.	LowGQX	END=32740837	GT	./.
chr2	32743289	.	C	.	.	LowGQX	END=32743499	GT	./.
chr2	32743883	.	G	.	.	LowGQX	END=32743959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32743960	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:33,0,30:60:5:0.500
chr2	32743961	.	T	.	.	LowGQX	END=32743963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32743964	.	T	.	.	LowGQX	.	GT	./.
chr2	32743965	.	C	.	.	LowGQX	END=32743970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32743971	.	C	.	.	LowGQX	.	GT	./.
chr2	32743972	.	C	.	.	LowGQX	END=32743974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32743975	.	T	.	.	LowGQX	.	GT	./.
chr2	32743976	.	C	.	.	LowGQX	END=32743991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32743992	.	G	.	.	LowGQX	.	GT	./.
chr2	32743993	.	A	.	.	LowGQX	END=32744002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32744003	.	C	.	.	LowGQX	.	GT	./.
chr2	32744004	.	A	.	.	LowGQX	END=32744005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32744006	.	A	.	.	LowGQX	.	GT	./.
chr2	32744007	.	G	.	.	LowGQX	END=32744008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32744009	.	G	.	.	LowGQX	.	GT	./.
chr2	32744010	.	T	.	.	LowGQX	END=32744013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32749954	.	G	.	.	LowGQX	END=32750086	GT	./.
chr2	32750510	.	T	.	.	LowGQX	END=32750695	GT	./.
chr2	32754717	.	G	.	.	LowGQX	END=32754891	GT	./.
chr2	32756421	.	G	.	.	LowGQX	END=32756618	GT	./.
chr2	32757157	.	G	.	.	LowGQX	END=32757369	GT	./.
chr2	32768307	.	G	.	.	LowGQX	END=32768340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	32768341	.	G	T	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr2	32768342	.	A	.	.	LowGQX	END=32768421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32768422	.	G	.	.	LowGQX	END=32768608	GT	./.
chr2	32770709	.	G	.	.	LowGQX	END=32770927	GT	./.
chr2	32772916	.	G	.	.	LowGQX	END=32773081	GT	./.
chr2	32774379	.	G	.	.	LowGQX	END=32774548	GT	./.
chr2	32800222	.	G	.	.	LowGQX	END=32800433	GT	./.
chr2	32818981	.	G	.	.	LowGQX	END=32819127	GT	./.
chr2	32820046	.	T	.	.	LowGQX	END=32820259	GT	./.
chr2	32822817	.	G	.	.	LowGQX	.	GT	./.
chr2	32822818	.	A	.	.	LowGQX	END=32822834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32822835	.	T	.	.	LowGQX	.	GT	./.
chr2	32822836	.	C	.	.	LowGQX	END=32822876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32822877	.	C	.	.	LowGQX	.	GT	./.
chr2	32822878	.	A	.	.	LowGQX	END=32822884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32822885	.	G	.	.	LowGQX	END=32822886	GT	./.
chr2	32822887	.	C	.	.	LowGQX	END=32822890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32822891	.	G	.	.	LowGQX	.	GT	./.
chr2	32822892	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32822893	.	T	.	.	LowGQX	.	GT	./.
chr2	32822894	.	G	.	.	LowGQX	END=32822929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32822930	.	T	.	.	LowGQX	.	GT	./.
chr2	32822931	.	C	.	.	LowGQX	END=32822958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32822959	.	T	.	.	LowGQX	.	GT	./.
chr2	32822960	.	T	.	.	LowGQX	END=32822992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32822993	.	T	.	.	LowGQX	.	GT	./.
chr2	32822994	.	G	.	.	LowGQX	END=32823007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32823008	.	T	.	.	LowGQX	.	GT	./.
chr2	32823009	.	G	.	.	LowGQX	END=32823035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32824805	.	G	.	.	LowGQX	END=32824864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32824865	.	G	.	.	LowGQX	.	GT	./.
chr2	32824866	.	T	.	.	LowGQX	END=32824880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32824881	.	T	.	.	LowGQX	.	GT	./.
chr2	32824882	.	A	.	.	LowGQX	END=32824932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32824933	.	T	.	.	LowGQX	.	GT	./.
chr2	32824934	.	G	.	.	LowGQX	END=32824946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32824947	.	A	.	.	LowGQX	END=32824948	GT	./.
chr2	32824949	.	C	.	.	LowGQX	END=32824967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32828062	.	T	.	.	LowGQX	END=32828161	GT	./.
chr2	32832521	.	G	.	.	LowGQX	END=32832600	GT	./.
chr2	32832601	.	C	.	.	LowGQX	END=32832710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32836514	.	G	.	.	LowGQX	END=32836649	GT	./.
chr2	32842791	.	G	.	.	LowGQX	END=32842971	GT	./.
chr2	32853294	.	T	.	.	LowGQX	END=32853349	GT	./.
chr2	32853350	.	G	.	.	LowGQX	END=32853450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	32853451	.	A	.	.	LowGQX	END=32853453	GT	./.
chr2	32855588	.	A	.	.	LowGQX	END=32855589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32855590	.	A	.	.	LowGQX	END=32855591	GT	./.
chr2	32855592	.	A	.	.	LowGQX	END=32855593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32855594	.	T	.	.	LowGQX	END=32855688	GT	./.
chr2	32855689	.	A	.	.	LowGQX	END=32855693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32855694	.	A	.	.	LowGQX	END=32855696	GT	./.
chr2	32855697	.	A	.	.	LowGQX	END=32855699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32855700	.	G	.	.	LowGQX	.	GT	./.
chr2	32855701	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32855702	.	T	.	.	LowGQX	.	GT	./.
chr2	32855703	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32855704	.	G	.	.	LowGQX	.	GT	./.
chr2	32855705	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32855706	.	T	.	.	LowGQX	.	GT	./.
chr2	32855707	.	A	.	.	LowGQX	END=32855721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32855722	.	T	.	.	LowGQX	.	GT	./.
chr2	32855723	.	A	.	.	LowGQX	END=32855729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32855730	.	T	.	.	LowGQX	.	GT	./.
chr2	32855731	.	T	.	.	LowGQX	END=32855732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32855733	.	C	.	.	LowGQX	.	GT	./.
chr2	32855734	.	T	.	.	LowGQX	END=32855744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32855745	.	A	.	.	LowGQX	.	GT	./.
chr2	32855746	.	C	.	.	LowGQX	END=32855749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32855750	.	T	.	.	LowGQX	.	GT	./.
chr2	32855751	.	T	.	.	LowGQX	END=32855753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32855754	.	G	.	.	LowGQX	.	GT	./.
chr2	32855755	.	A	.	.	LowGQX	END=32855761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32855762	.	G	.	.	LowGQX	.	GT	./.
chr2	32855763	.	G	.	.	LowGQX	END=32855764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32855765	.	A	.	.	LowGQX	.	GT	./.
chr2	32855766	.	A	.	.	LowGQX	END=32855767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32855768	.	G	.	.	LowGQX	.	GT	./.
chr2	32855769	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32858941	.	A	.	.	LowGQX	END=32859074	GT	./.
chr2	32865335	.	A	.	.	LowGQX	END=32865417	GT	./.
chr2	32865418	.	C	.	.	LowGQX	END=32865457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	32865458	.	A	.	.	LowGQX	END=32865479	GT	./.
chr2	32875196	.	A	.	.	LowGQX	END=32875302	GT	./.
chr2	32889368	.	A	.	.	LowGQX	END=32889557	GT	./.
chr2	32891700	.	A	.	.	LowGQX	END=32891837	GT	./.
chr2	32897337	.	A	.	.	LowGQX	END=32897453	GT	./.
chr2	32903907	.	T	.	.	LowGQX	END=32904006	GT	./.
chr2	32927872	.	A	.	.	LowGQX	END=32927989	GT	./.
chr2	32929905	.	A	.	.	LowGQX	END=32930004	GT	./.
chr2	32958893	.	A	.	.	LowGQX	END=32958894	GT	./.
chr2	32958895	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	32958896	.	C	.	.	LowGQX	END=32958992	GT	./.
chr2	32961759	.	A	.	.	LowGQX	END=32961928	GT	./.
chr2	32983357	.	A	.	.	LowGQX	END=32983588	GT	./.
chr2	32991505	.	T	.	.	LowGQX	END=32991604	GT	./.
chr2	33002947	.	A	.	.	LowGQX	END=33003049	GT	./.
chr2	33005091	.	T	.	.	LowGQX	END=33005190	GT	./.
chr2	33007670	.	A	.	.	LowGQX	END=33007769	GT	./.
chr2	33012049	.	A	.	.	LowGQX	END=33012218	GT	./.
chr2	33036089	.	A	.	.	LowGQX	END=33036290	GT	./.
chr2	33037569	.	A	.	.	LowGQX	END=33037684	GT	./.
chr2	33042522	.	A	.	.	LowGQX	END=33042626	GT	./.
chr2	33045881	.	A	.	.	LowGQX	END=33046007	GT	./.
chr2	33172380	.	C	.	.	LowGQX	END=33172399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	33172400	.	G	.	.	LowGQX	END=33172418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	33172419	.	C	.	.	LowGQX	END=33172423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	33172424	.	G	.	.	LowGQX	END=33172428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	33172429	.	G	.	.	PASS	END=33172464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	33172465	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:60
chr2	33172466	.	G	.	.	PASS	END=33172474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:60
chr2	33172475	.	C	.	.	PASS	END=33172476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:36:60
chr2	33172477	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:48:60
chr2	33172478	.	C	A	4.60	LowGQX;LowQD	BaseQRankSum=0.524;DP=24;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=0.175;QD=0.19;ReadPosRankSum=0.000;SB=-21.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:21,3:24:32.74:33,0,518:60:5:0.125
chr2	33172479	.	T	.	.	PASS	END=33172489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr2	33172490	.	C	.	.	PASS	END=33172554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:45:60
chr2	33172555	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:39:60
chr2	33172556	.	C	.	.	PASS	END=33172559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:42:60
chr2	33172560	.	G	.	.	PASS	END=33172566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:45:60
chr2	33172567	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:30:60
chr2	33172568	.	C	.	.	PASS	END=33172571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:51:60
chr2	33172572	.	A	.	.	PASS	END=33172574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:45:60
chr2	33172575	.	T	.	.	PASS	END=33172577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:42:60
chr2	33172578	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:27:60
chr2	33172579	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:39:60
chr2	33172580	.	C	.	.	PASS	END=33172583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr2	33172584	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:30:60
chr2	33172585	.	G	.	.	PASS	END=33172586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:60
chr2	33172587	.	T	.	.	PASS	END=33172588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:30:60
chr2	33172589	.	G	.	.	PASS	END=33172612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr2	33172613	.	T	.	.	PASS	END=33172617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr2	33172618	.	C	.	.	PASS	END=33172621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	33172622	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	33172623	.	G	.	.	PASS	END=33172626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	33172627	.	T	.	.	LowGQX	END=33172638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	33172639	.	G	.	.	LowGQX	END=33172659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr2	33172660	.	C	.	.	LowGQX	END=33172670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr2	33172671	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:12:60
chr2	33172672	.	C	.	.	PASS	END=33172682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr2	33172683	.	C	.	.	PASS	END=33172687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr2	33172688	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:48:60
chr2	33172689	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:15:60
chr2	33172690	.	C	.	.	PASS	END=33172705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	33172706	.	G	.	.	PASS	END=33172719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	33172720	.	G	.	.	PASS	END=33172741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	33172742	.	G	.	.	PASS	END=33172753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:90:60
chr2	33172754	.	T	.	.	PASS	END=33172810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:80:60
chr2	33172811	.	C	.	.	PASS	END=33172826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	33172827	.	G	A	1030.00	PASS	BaseQRankSum=0.046;DP=99;Dels=0.00;FS=0.794;HRun=1;HaplotypeScore=9.4692;MQ=60;MQ0=0;MQRankSum=-0.347;QD=10.40;ReadPosRankSum=0.753;SB=-616.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:47,52:99:99:1060,0,965:60:99:0.525
chr2	33172828	.	A	.	.	PASS	END=33172887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	33173928	.	T	.	.	PASS	END=33174011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	33174012	.	C	.	.	PASS	END=33174027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	33245974	.	A	.	.	PASS	END=33246025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	33246026	.	C	.	.	PASS	END=33246085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	33246086	.	A	.	.	PASS	END=33246167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	33246168	.	C	.	.	PASS	END=33246210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	33246211	.	C	.	.	PASS	END=33246253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	33246254	.	C	.	.	PASS	END=33246275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	33335647	.	A	.	.	PASS	END=33335673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	33335674	.	G	.	.	PASS	END=33335746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr2	33335747	.	C	.	.	PASS	END=33335801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	33335802	.	T	.	.	PASS	END=33335820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	33359473	.	A	.	.	LowGQX	END=33359486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	33359487	.	A	.	.	LowGQX	END=33359493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr2	33359494	.	C	.	.	LowGQX	END=33359532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	33359533	.	A	.	.	LowGQX	END=33359559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	33359560	.	G	.	.	LowGQX	END=33359564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	33359565	.	G	.	.	LowGQX	END=33359567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr2	33359568	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr2	33359569	.	T	.	.	LowGQX	END=33359572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	33359803	.	T	.	.	PASS	END=33359854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	33359855	.	C	.	.	PASS	END=33359888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	33359889	.	G	.	.	PASS	END=33360003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr2	33360004	.	T	.	.	PASS	END=33360029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	33411921	.	A	.	.	PASS	END=33411945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	33411946	.	A	.	.	PASS	END=33411962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	33411963	.	T	.	.	PASS	END=33412076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	33412077	.	G	A	2402.87	PASS	BaseQRankSum=3.608;DP=208;Dels=0.00;FS=2.506;HRun=0;HaplotypeScore=13.2569;MQ=60;MQ0=0;MQRankSum=1.514;QD=11.55;ReadPosRankSum=1.203;SB=-1172.29	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:105,103:208:99:2433,0,2483:60:99:0.495
chr2	33412078	.	T	.	.	PASS	END=33412105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr2	33412106	.	A	.	.	PASS	END=33412148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	33412149	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:113:99:60
chr2	33413642	.	A	.	.	PASS	END=33413663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	33413664	.	G	.	.	PASS	END=33413733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	33413734	.	C	.	.	PASS	END=33413836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	33413837	.	C	.	.	PASS	END=33413914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	33413915	.	A	.	.	PASS	END=33413920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	33442617	.	A	.	.	PASS	END=33442658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	33442659	.	G	.	.	PASS	END=33442723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	33447133	.	T	.	.	PASS	END=33447134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	33447135	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:76:60
chr2	33447136	.	T	.	.	PASS	END=33447176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	33447177	.	G	.	.	PASS	END=33447232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	33468727	.	A	.	.	PASS	END=33468760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr2	33468761	.	C	.	.	PASS	END=33468774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr2	33468775	.	T	.	.	PASS	END=33468835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr2	33468836	.	T	.	.	PASS	END=33468850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr2	33468851	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:57:60
chr2	33468852	.	G	.	.	PASS	END=33468853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr2	33477742	.	A	.	.	PASS	END=33477769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr2	33477770	.	A	.	.	PASS	END=33477849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr2	33477850	.	C	.	.	PASS	END=33477883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr2	33477884	.	T	.	.	PASS	END=33477913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	33482349	.	A	.	.	PASS	END=33482381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr2	33482382	.	G	.	.	PASS	END=33482533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	33482534	.	T	.	.	PASS	END=33482567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	33482568	.	G	.	.	PASS	END=33482580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	33484617	.	T	.	.	PASS	END=33484660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	33484661	.	C	.	.	PASS	END=33484712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:97:60
chr2	33484713	.	A	.	.	PASS	END=33484716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	33487787	.	A	.	.	PASS	END=33487893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	33488359	.	A	.	.	PASS	END=33488455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	33488456	.	A	.	.	PASS	END=33488461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	33498721	.	A	.	.	PASS	END=33498804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr2	33498805	.	C	.	.	PASS	END=33498820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	33498821	.	T	.	.	PASS	END=33498850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	33500030	.	A	.	.	PASS	END=33500040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	33500041	.	A	.	.	PASS	END=33500068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	33500069	.	C	.	.	PASS	END=33500151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	33500152	.	G	.	.	PASS	END=33500159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:87:60
chr2	33500795	.	A	.	.	PASS	END=33500911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr2	33500912	.	T	.	.	PASS	END=33500945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	33500946	.	A	.	.	PASS	END=33500992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	33505104	.	A	.	.	PASS	END=33505185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	33505186	.	T	.	.	PASS	END=33505216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	33505217	.	A	.	.	PASS	END=33505227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	33518225	.	A	.	.	PASS	END=33518279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr2	33518280	.	C	.	.	PASS	END=33518326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	33518327	.	T	.	.	PASS	END=33518333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	33518334	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:69:60
chr2	33518335	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:99:60
chr2	33518336	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:66:60
chr2	33518337	.	A	.	.	PASS	END=33518351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr2	33525516	.	A	.	.	PASS	END=33525601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	33525602	.	A	.	.	PASS	END=33525619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	33525620	.	C	.	.	PASS	END=33525629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	33525630	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:60
chr2	33525631	.	C	.	.	PASS	END=33525636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	33525637	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:75:60
chr2	33525638	.	A	.	.	PASS	END=33525642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr2	33526587	.	A	.	.	PASS	END=33526631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	33526632	.	G	.	.	PASS	END=33526671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	33526672	.	C	.	.	PASS	END=33526712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:98:60
chr2	33526713	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:99:60
chr2	33534499	.	A	.	.	PASS	END=33534527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	33534528	.	G	.	.	PASS	END=33534548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	33534549	.	G	.	.	PASS	END=33534582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	33534583	.	T	.	.	PASS	END=33534668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	33540209	.	A	.	.	PASS	END=33540246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	33540247	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:84:99:60
chr2	33540248	.	G	A	1018.84	PASS	BaseQRankSum=1.812;DP=84;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.8302;MQ=60;MQ0=0;MQRankSum=-0.117;QD=12.13;ReadPosRankSum=-0.807;SB=-687.91	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:39,45:84:99:1049,0,1032:60:99:0.536
chr2	33540249	.	C	.	.	PASS	END=33540343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	33540344	.	A	.	.	PASS	END=33540379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	33540380	.	G	.	.	PASS	END=33540388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	33567903	.	A	.	.	PASS	END=33567978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr2	33567979	.	T	.	.	PASS	END=33568028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr2	33568029	.	G	.	.	PASS	END=33568032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	33572432	.	A	.	.	PASS	END=33572453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	33572454	.	C	.	.	PASS	END=33572548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	33572549	.	T	.	.	PASS	END=33572554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	33572555	.	G	A	1253.09	PASS	BaseQRankSum=0.706;DP=94;Dels=0.00;FS=2.924;HRun=1;HaplotypeScore=2.8935;MQ=60;MQ0=0;MQRankSum=-1.005;QD=13.33;ReadPosRankSum=-1.266;SB=-714.35	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:39,55:94:99:1283,0,850:60:99:0.585
chr2	33572556	.	T	.	.	PASS	END=33572565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	33572566	.	G	A	791.61	PASS	BaseQRankSum=1.549;DP=81;Dels=0.00;FS=3.206;HRun=0;HaplotypeScore=1.9466;MQ=60;MQ0=0;MQRankSum=-0.291;QD=9.77;ReadPosRankSum=1.406;SB=-305.71	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:46,35:81:99:822,0,1107:60:99:0.432
chr2	33572567	.	G	.	.	PASS	END=33572579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	33585662	.	A	.	.	PASS	END=33585692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr2	33585693	.	G	.	.	PASS	END=33585795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr2	33585796	.	T	C	6919.21	PASS	DP=242;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=17.1477;MQ=60;MQ0=0;QD=28.59;SB=-2891.98	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,240:242:99:6919,524,0:60:99:1.000
chr2	33585797	.	G	.	.	PASS	END=33585842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr2	33585843	.	A	.	.	PASS	END=33585848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr2	33586490	.	A	.	.	PASS	END=33586493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:60:60
chr2	33586494	.	A	.	.	PASS	END=33586496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:51:60
chr2	33586497	.	T	.	.	PASS	END=33586502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:60:60
chr2	33586503	.	C	.	.	PASS	END=33586507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:54:60
chr2	33586508	.	A	.	.	PASS	END=33586525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:63:60
chr2	33586526	.	A	.	.	PASS	END=33586561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr2	33586562	.	C	.	.	PASS	END=33586581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr2	33586582	.	G	.	.	PASS	END=33586589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	33588455	.	A	.	.	PASS	END=33588535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	33588536	.	C	.	.	PASS	END=33588558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	33588559	.	A	.	.	PASS	END=33588565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	33588566	.	T	.	.	PASS	END=33588587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr2	33589281	.	A	.	.	PASS	END=33589325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	33589326	.	G	.	.	PASS	END=33589328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	33589329	.	T	.	.	PASS	END=33589382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	33589383	.	T	.	.	PASS	END=33589425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	33590398	.	A	.	.	PASS	END=33590485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr2	33590486	.	A	.	.	PASS	END=33590535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr2	33590536	.	C	.	.	PASS	END=33590572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	33614249	.	A	.	.	PASS	END=33614269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	33614270	.	T	.	.	PASS	END=33614356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	33614357	.	C	.	.	PASS	END=33614375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	33622198	.	A	.	.	PASS	END=33622204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	33622205	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:76:60
chr2	33622206	.	T	.	.	PASS	END=33622254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	33622255	.	A	.	.	PASS	END=33622271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	33622272	.	G	.	.	PASS	END=33622323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	33622324	.	G	.	.	PASS	END=33622351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	33623429	.	A	.	.	PASS	END=33623470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr2	33623471	.	C	.	.	PASS	END=33623552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr2	33623553	.	A	.	.	PASS	END=33623575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	33623576	.	C	.	.	PASS	END=33623609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	33623610	.	T	.	.	PASS	END=33623614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	33740189	.	A	.	.	LowGQX	END=33740288	GT	./.
chr2	33741608	.	G	.	.	LowGQX	END=33741711	GT	./.
chr2	33745000	.	T	.	.	LowGQX	END=33745099	GT	./.
chr2	33745619	.	G	.	.	LowGQX	END=33745751	GT	./.
chr2	33747021	.	G	.	.	LowGQX	END=33747169	GT	./.
chr2	33748945	.	G	.	.	LowGQX	END=33749119	GT	./.
chr2	33749498	.	G	.	.	LowGQX	END=33749615	GT	./.
chr2	33752203	.	G	.	.	LowGQX	END=33752356	GT	./.
chr2	33752357	.	G	.	.	LowGQX	END=33752429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33752430	.	A	.	.	LowGQX	.	GT	./.
chr2	33752431	.	T	.	.	LowGQX	END=33752447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	33752448	.	A	.	.	LowGQX	.	GT	./.
chr2	33752449	.	A	.	.	LowGQX	END=33752479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	33759379	.	T	.	.	LowGQX	END=33759478	GT	./.
chr2	33764160	.	G	.	.	LowGQX	END=33764175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33764176	.	A	.	.	LowGQX	.	GT	./.
chr2	33764177	.	C	.	.	LowGQX	END=33764181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33764182	.	C	.	.	LowGQX	.	GT	./.
chr2	33764183	.	C	.	.	LowGQX	END=33764200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33764201	.	C	.	.	LowGQX	.	GT	./.
chr2	33764202	.	C	.	.	LowGQX	END=33764227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33764228	.	C	.	.	LowGQX	.	GT	./.
chr2	33764229	.	A	.	.	LowGQX	END=33764238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33764239	.	C	.	.	LowGQX	.	GT	./.
chr2	33764240	.	C	.	.	LowGQX	END=33764285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33764286	.	T	.	.	LowGQX	.	GT	./.
chr2	33768578	.	G	.	.	LowGQX	END=33768694	GT	./.
chr2	33774670	.	G	.	.	LowGQX	END=33774818	GT	./.
chr2	33780566	.	A	.	.	LowGQX	END=33780665	GT	./.
chr2	33783277	.	G	.	.	LowGQX	END=33783403	GT	./.
chr2	33783738	.	G	.	.	LowGQX	END=33784008	GT	./.
chr2	33784009	.	G	.	.	LowGQX	END=33784059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33784060	.	A	.	.	LowGQX	.	GT	./.
chr2	33784061	.	C	.	.	LowGQX	END=33784097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33784649	.	A	.	.	LowGQX	END=33784748	GT	./.
chr2	33787750	.	G	.	.	LowGQX	END=33787849	GT	./.
chr2	33809841	.	C	.	.	LowGQX	END=33810513	GT	./.
chr2	33810545	.	T	.	.	LowGQX	END=33810766	GT	./.
chr2	33811627	.	A	.	.	LowGQX	END=33811747	GT	./.
chr2	33812304	.	C	.	.	LowGQX	END=33812321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	33812322	.	C	.	.	LowGQX	END=33812403	GT	./.
chr2	33813130	.	T	.	.	LowGQX	END=33813134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33813135	.	T	.	.	LowGQX	.	GT	./.
chr2	33813136	.	T	.	.	LowGQX	END=33813152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33813153	.	A	.	.	LowGQX	.	GT	./.
chr2	33813154	.	G	.	.	LowGQX	END=33813155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33813156	.	T	.	.	LowGQX	END=33813229	GT	./.
chr2	33813400	.	A	.	.	LowGQX	END=33813588	GT	./.
chr2	33817145	.	A	.	.	LowGQX	END=33817166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33817167	.	T	.	.	LowGQX	END=33817283	GT	./.
chr2	33820514	.	G	.	.	LowGQX	END=33820753	GT	./.
chr2	33824213	.	G	.	.	LowGQX	END=33824312	GT	./.
chr2	33952095	.	T	.	.	LowGQX	END=33952143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33952144	.	G	.	.	LowGQX	END=33952551	GT	./.
chr2	33952552	.	C	.	.	LowGQX	END=33952566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33952567	.	C	.	.	LowGQX	.	GT	./.
chr2	33952568	.	A	.	.	LowGQX	END=33952677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33952678	.	A	.	.	LowGQX	.	GT	./.
chr2	33952679	.	C	.	.	LowGQX	END=33952689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33952690	.	C	.	.	LowGQX	.	GT	./.
chr2	33952691	.	A	.	.	LowGQX	END=33952702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33952703	.	T	.	.	LowGQX	END=33952764	GT	./.
chr2	33952765	.	G	.	.	LowGQX	END=33952766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33952767	.	T	.	.	LowGQX	.	GT	./.
chr2	33952768	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33952769	.	G	.	.	LowGQX	.	GT	./.
chr2	33952770	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33952771	.	G	.	.	LowGQX	.	GT	./.
chr2	33952772	.	A	.	.	LowGQX	END=33952774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33952775	.	T	.	.	LowGQX	END=33952776	GT	./.
chr2	33952777	.	G	.	.	LowGQX	END=33952793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33952794	.	A	.	.	LowGQX	.	GT	./.
chr2	33952795	.	G	.	.	LowGQX	END=33952838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	33952839	.	T	.	.	LowGQX	.	GT	./.
chr2	33952840	.	C	.	.	LowGQX	END=33952844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36583434	.	G	.	.	LowGQX	END=36583768	GT	./.
chr2	36605456	.	G	.	.	LowGQX	END=36605555	GT	./.
chr2	36623755	.	A	.	.	LowGQX	END=36623932	GT	./.
chr2	36668399	.	A	.	.	LowGQX	END=36668645	GT	./.
chr2	36669756	.	A	.	.	LowGQX	END=36669758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36669759	.	T	.	.	LowGQX	.	GT	./.
chr2	36669760	.	T	.	.	LowGQX	END=36669763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36669764	.	G	.	.	LowGQX	END=36669770	GT	./.
chr2	36669771	.	C	.	.	LowGQX	END=36669807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36669808	.	G	.	.	LowGQX	.	GT	./.
chr2	36669809	.	C	.	.	LowGQX	END=36669829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36669830	.	A	.	.	LowGQX	END=36669832	GT	./.
chr2	36669833	.	C	.	.	LowGQX	END=36669840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36669841	.	A	.	.	LowGQX	.	GT	./.
chr2	36669842	.	G	.	.	LowGQX	END=36669843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36669844	.	C	.	.	LowGQX	END=36669845	GT	./.
chr2	36669846	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36669847	.	A	.	.	LowGQX	.	GT	./.
chr2	36669848	.	C	.	.	LowGQX	END=36669853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36669854	.	A	.	.	LowGQX	.	GT	./.
chr2	36669855	.	T	.	.	LowGQX	END=36669880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36691675	.	A	.	.	LowGQX	END=36691800	GT	./.
chr2	36704030	.	A	.	.	LowGQX	END=36704216	GT	./.
chr2	36706638	.	A	.	.	LowGQX	END=36706839	GT	./.
chr2	36726360	.	A	.	.	LowGQX	END=36726492	GT	./.
chr2	36737124	.	A	.	.	LowGQX	END=36737284	GT	./.
chr2	36739414	.	A	.	.	LowGQX	END=36739522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36739523	.	T	.	.	LowGQX	.	GT	./.
chr2	36739524	.	C	.	.	LowGQX	END=36739539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36740697	.	A	.	.	LowGQX	END=36740701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	36740702	.	C	.	.	LowGQX	END=36740910	GT	./.
chr2	36744468	.	A	.	.	LowGQX	END=36744687	GT	./.
chr2	36749233	.	A	.	.	LowGQX	END=36749458	GT	./.
chr2	36756252	.	C	.	.	LowGQX	END=36756351	GT	./.
chr2	36759000	.	C	.	.	LowGQX	END=36759164	GT	./.
chr2	36764483	.	T	.	.	LowGQX	END=36764691	GT	./.
chr2	36771467	.	C	.	.	LowGQX	END=36771643	GT	./.
chr2	36774125	.	A	.	.	LowGQX	END=36774324	GT	./.
chr2	36775666	.	A	.	.	LowGQX	END=36775846	GT	./.
chr2	36779181	.	A	.	.	LowGQX	END=36779344	GT	./.
chr2	36780264	.	C	.	.	LowGQX	END=36780363	GT	./.
chr2	36781354	.	T	.	.	LowGQX	END=36781392	GT	./.
chr2	36781393	.	C	.	.	LowGQX	END=36781400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	36781401	.	T	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	36781402	.	A	.	.	LowGQX	END=36781453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	36782755	.	T	.	.	LowGQX	END=36782908	GT	./.
chr2	36783112	.	C	.	.	LowGQX	END=36783211	GT	./.
chr2	36785510	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36785511	.	C	.	.	LowGQX	.	GT	./.
chr2	36785512	.	A	.	.	LowGQX	END=36785513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36785514	.	C	.	.	LowGQX	.	GT	./.
chr2	36785515	.	T	.	.	LowGQX	END=36785531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36785532	.	C	.	.	LowGQX	.	GT	./.
chr2	36785533	.	A	.	.	LowGQX	END=36785538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36785539	.	C	.	.	LowGQX	.	GT	./.
chr2	36785540	.	A	.	.	LowGQX	END=36785550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36785551	.	A	.	.	LowGQX	.	GT	./.
chr2	36785552	.	G	.	.	LowGQX	END=36785554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36785555	.	A	.	.	LowGQX	END=36785668	GT	./.
chr2	36787867	.	A	.	.	LowGQX	END=36787954	GT	./.
chr2	36787955	.	G	.	.	LowGQX	END=36787998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	36787999	.	T	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	36788000	.	G	.	.	LowGQX	END=36788017	GT	./.
chr2	36805739	.	C	.	.	LowGQX	END=36805756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36805757	.	T	.	.	LowGQX	END=36805930	GT	./.
chr2	36805931	.	C	.	.	LowGQX	END=36806008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36808432	.	C	.	.	LowGQX	END=36808435	GT	./.
chr2	36808436	.	C	.	.	LowGQX	END=36808574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36810495	.	C	.	.	LowGQX	END=36810612	GT	./.
chr2	36818045	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36818046	.	C	.	.	LowGQX	.	GT	./.
chr2	36818047	.	C	.	.	LowGQX	END=36818053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36818054	.	C	.	.	LowGQX	.	GT	./.
chr2	36818055	.	T	.	.	LowGQX	END=36818057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36818058	.	G	.	.	LowGQX	.	GT	./.
chr2	36818059	.	A	.	.	LowGQX	END=36818061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36818062	.	T	.	.	LowGQX	.	GT	./.
chr2	36818063	.	T	.	.	LowGQX	END=36818065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36818066	.	G	.	.	LowGQX	.	GT	./.
chr2	36818067	.	A	.	.	LowGQX	END=36818070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36818071	.	A	.	.	LowGQX	.	GT	./.
chr2	36818072	.	G	.	.	LowGQX	END=36818085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36818086	.	C	.	.	LowGQX	.	GT	./.
chr2	36818087	.	T	.	.	LowGQX	END=36818089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36818090	.	T	.	.	LowGQX	END=36818091	GT	./.
chr2	36818092	.	T	.	.	LowGQX	END=36818098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36818099	.	A	.	.	LowGQX	END=36818101	GT	./.
chr2	36818102	.	T	.	.	LowGQX	END=36818103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36818104	.	C	.	.	LowGQX	.	GT	./.
chr2	36818105	.	A	.	.	LowGQX	END=36818110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36818111	.	C	.	.	LowGQX	.	GT	./.
chr2	36818112	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36818113	.	G	.	.	LowGQX	END=36818116	GT	./.
chr2	36818117	.	T	.	.	LowGQX	END=36818118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36818119	.	A	.	.	LowGQX	.	GT	./.
chr2	36818120	.	C	.	.	LowGQX	END=36818132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36818133	.	A	.	.	LowGQX	END=36818154	GT	./.
chr2	36825008	.	C	.	.	LowGQX	END=36825287	GT	./.
chr2	36943490	.	C	.	.	LowGQX	END=36943589	GT	./.
chr2	36956552	.	A	.	.	LowGQX	END=36956651	GT	./.
chr2	36970241	.	A	.	.	LowGQX	END=36970401	GT	./.
chr2	36982062	.	A	.	.	LowGQX	END=36982161	GT	./.
chr2	36982162	.	C	.	.	LowGQX	END=36982199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36986110	.	A	.	.	LowGQX	END=36986127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36986128	.	G	.	.	LowGQX	.	GT	./.
chr2	36986129	.	G	.	.	LowGQX	END=36986143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36986144	.	T	.	.	LowGQX	.	GT	./.
chr2	36986145	.	C	.	.	LowGQX	END=36986148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36986149	.	T	.	.	LowGQX	END=36986150	GT	./.
chr2	36986151	.	T	.	.	LowGQX	END=36986218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36986219	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	36986220	.	C	.	.	LowGQX	END=36986304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	36986305	.	A	.	.	LowGQX	END=36986314	GT	./.
chr2	36994235	.	A	.	.	LowGQX	END=36994430	GT	./.
chr2	37000862	.	G	.	.	LowGQX	END=37001012	GT	./.
chr2	37002128	.	C	.	.	LowGQX	END=37002136	GT	./.
chr2	37002137	.	C	.	.	LowGQX	END=37002227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37008843	.	T	.	.	LowGQX	END=37008942	GT	./.
chr2	37010465	.	T	.	.	LowGQX	END=37010564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37014270	.	A	.	.	LowGQX	END=37014421	GT	./.
chr2	37014926	.	C	.	.	LowGQX	END=37015025	GT	./.
chr2	37028438	.	C	.	.	LowGQX	END=37028441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37028442	.	A	.	.	LowGQX	.	GT	./.
chr2	37028443	.	G	.	.	LowGQX	END=37028445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37028446	.	A	.	.	LowGQX	END=37028549	GT	./.
chr2	37032579	.	A	.	.	LowGQX	END=37032783	GT	./.
chr2	37032784	.	G	.	.	LowGQX	END=37032809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37035613	.	A	.	.	LowGQX	END=37036130	GT	./.
chr2	37041324	.	A	.	.	LowGQX	END=37041414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37041415	.	T	.	.	LowGQX	END=37041506	GT	./.
chr2	37076597	.	C	.	.	LowGQX	END=37076770	GT	./.
chr2	37076851	.	A	.	.	LowGQX	END=37076950	GT	./.
chr2	37078141	.	A	.	.	LowGQX	END=37078252	GT	./.
chr2	37082353	.	A	.	.	LowGQX	END=37082354	GT	./.
chr2	37082355	.	T	.	.	LowGQX	END=37082368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37082369	.	G	.	.	LowGQX	.	GT	./.
chr2	37082370	.	A	.	.	LowGQX	END=37082396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37082397	.	T	.	.	LowGQX	.	GT	./.
chr2	37082398	.	T	.	.	LowGQX	END=37082410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37082411	.	A	.	.	LowGQX	.	GT	./.
chr2	37082412	.	T	.	.	LowGQX	END=37082445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37082446	.	A	.	.	LowGQX	.	GT	./.
chr2	37082447	.	T	.	.	LowGQX	END=37082463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37082464	.	C	.	.	LowGQX	.	GT	./.
chr2	37082465	.	A	.	.	LowGQX	END=37082475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37082476	.	A	.	.	LowGQX	.	GT	./.
chr2	37082477	.	G	.	.	LowGQX	END=37082478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37082479	.	G	.	.	LowGQX	END=37082480	GT	./.
chr2	37082481	.	C	.	.	LowGQX	END=37082497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37084997	.	A	.	.	LowGQX	END=37085098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37085099	.	T	.	.	LowGQX	END=37085168	GT	./.
chr2	37088273	.	A	.	.	LowGQX	END=37088398	GT	./.
chr2	37094931	.	A	.	.	LowGQX	END=37095030	GT	./.
chr2	37096695	.	A	.	.	LowGQX	END=37096874	GT	./.
chr2	37105032	.	A	.	.	LowGQX	END=37105172	GT	./.
chr2	37111033	.	A	.	.	LowGQX	END=37111058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37111059	.	T	.	.	LowGQX	.	GT	./.
chr2	37111060	.	A	.	.	LowGQX	END=37111153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37111154	.	T	.	.	LowGQX	END=37111220	GT	./.
chr2	37113857	.	A	.	.	LowGQX	END=37113966	GT	./.
chr2	37113967	.	T	.	.	LowGQX	END=37113971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37121039	.	A	.	.	LowGQX	END=37121178	GT	./.
chr2	37126634	.	A	.	.	LowGQX	END=37126784	GT	./.
chr2	37126785	.	C	.	.	LowGQX	END=37126803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37129725	.	A	.	.	LowGQX	END=37129896	GT	./.
chr2	37132673	.	A	.	.	LowGQX	END=37132772	GT	./.
chr2	37143208	.	A	.	.	LowGQX	END=37143307	GT	./.
chr2	37152246	.	A	.	.	LowGQX	.	GT	./.
chr2	37152247	.	C	.	.	LowGQX	END=37152251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37152252	.	C	.	.	LowGQX	END=37152253	GT	./.
chr2	37152254	.	T	.	.	LowGQX	END=37152295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37152296	.	T	.	.	LowGQX	.	GT	./.
chr2	37152297	.	C	.	.	LowGQX	END=37152352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37152353	.	T	.	.	LowGQX	.	GT	./.
chr2	37193360	.	G	.	.	LowGQX	END=37193495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37193496	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	37193497	.	G	.	.	LowGQX	END=37193500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37193501	.	C	.	.	LowGQX	END=37193629	GT	./.
chr2	37195614	.	C	.	.	LowGQX	END=37195782	GT	./.
chr2	37208631	.	A	.	.	LowGQX	END=37208939	GT	./.
chr2	37215787	.	A	.	.	LowGQX	END=37216004	GT	./.
chr2	37217789	.	A	.	.	LowGQX	END=37217944	GT	./.
chr2	37227727	.	A	.	.	LowGQX	END=37227958	GT	./.
chr2	37229447	.	A	.	.	LowGQX	END=37229717	GT	./.
chr2	37230683	.	A	.	.	LowGQX	END=37230831	GT	./.
chr2	37232742	.	C	.	.	LowGQX	END=37232749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37232750	.	T	.	.	LowGQX	END=37232904	GT	./.
chr2	37234191	.	A	.	.	LowGQX	END=37234317	GT	./.
chr2	37234318	.	T	.	.	LowGQX	END=37234420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37234421	.	T	.	.	LowGQX	END=37234422	GT	./.
chr2	37234423	.	G	.	.	LowGQX	END=37234444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37234445	.	C	.	.	LowGQX	END=37234446	GT	./.
chr2	37234447	.	C	.	.	LowGQX	END=37234449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37235677	.	C	.	.	LowGQX	END=37235700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37235701	.	T	.	.	LowGQX	.	GT	./.
chr2	37235702	.	T	.	.	LowGQX	END=37235807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37235808	.	C	.	.	LowGQX	END=37235993	GT	./.
chr2	37240982	.	A	.	.	LowGQX	END=37241114	GT	./.
chr2	37241115	.	G	.	.	LowGQX	END=37241165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37246937	.	C	.	.	LowGQX	END=37247008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37247009	.	A	.	.	LowGQX	END=37247036	GT	./.
chr2	37247796	.	A	.	.	LowGQX	END=37247810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37247811	.	T	.	.	LowGQX	END=37247860	GT	./.
chr2	37247861	.	C	.	.	LowGQX	END=37247879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37247880	.	A	.	.	LowGQX	.	GT	./.
chr2	37247881	.	G	.	.	LowGQX	END=37247892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37247893	.	C	.	.	LowGQX	.	GT	./.
chr2	37247894	.	A	.	.	LowGQX	END=37247907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37247908	.	G	.	.	LowGQX	.	GT	./.
chr2	37247909	.	G	.	.	LowGQX	END=37247918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37247919	.	T	.	.	LowGQX	.	GT	./.
chr2	37247920	.	C	.	.	LowGQX	END=37247935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37247936	.	T	.	.	LowGQX	.	GT	./.
chr2	37247937	.	G	.	.	LowGQX	END=37247963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37247964	.	A	.	.	LowGQX	.	GT	./.
chr2	37247965	.	G	.	.	LowGQX	END=37247969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37247970	.	A	.	.	LowGQX	.	GT	./.
chr2	37247971	.	A	.	.	LowGQX	END=37247975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37247976	.	T	.	.	LowGQX	.	GT	./.
chr2	37247977	.	C	.	.	LowGQX	END=37247978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37247979	.	T	.	.	LowGQX	END=37247981	GT	./.
chr2	37247982	.	A	.	.	LowGQX	END=37247992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37247993	.	T	.	.	LowGQX	.	GT	./.
chr2	37247994	.	A	.	.	LowGQX	END=37248005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37255064	.	A	.	.	LowGQX	END=37255124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37255125	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	37255126	.	C	.	.	LowGQX	END=37255190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37255191	.	G	.	.	LowGQX	END=37255319	GT	./.
chr2	37255822	.	A	.	.	LowGQX	END=37255871	GT	./.
chr2	37255872	.	G	.	.	LowGQX	END=37256065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37259770	.	A	.	.	LowGQX	END=37259866	GT	./.
chr2	37259867	.	C	.	.	LowGQX	END=37259873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37259874	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	37259875	.	A	.	.	LowGQX	END=37259888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37259889	.	G	.	.	LowGQX	.	GT	./.
chr2	37259890	.	T	.	.	LowGQX	END=37259914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37259915	.	A	.	.	LowGQX	.	GT	./.
chr2	37259916	.	C	.	.	LowGQX	END=37259918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37264996	.	A	.	.	LowGQX	END=37265169	GT	./.
chr2	37267460	.	T	.	.	LowGQX	END=37267515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37267516	.	C	.	.	LowGQX	END=37267663	GT	./.
chr2	37268274	.	A	.	.	LowGQX	END=37268437	GT	./.
chr2	37276784	.	A	.	.	LowGQX	END=37276988	GT	./.
chr2	37280643	.	A	.	.	LowGQX	END=37280677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37280678	.	A	.	.	LowGQX	END=37280752	GT	./.
chr2	37282190	.	T	.	.	LowGQX	END=37282289	GT	./.
chr2	37283581	.	A	.	.	LowGQX	END=37283760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37284458	.	A	.	.	LowGQX	END=37284459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37284460	.	C	.	.	LowGQX	END=37284586	GT	./.
chr2	37284587	.	T	.	.	LowGQX	END=37284634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37284635	.	A	.	.	LowGQX	END=37284636	GT	./.
chr2	37284637	.	C	.	.	LowGQX	END=37284638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37284639	.	T	.	.	LowGQX	.	GT	./.
chr2	37284640	.	C	.	.	LowGQX	END=37284647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37285592	.	A	.	.	LowGQX	END=37285633	GT	./.
chr2	37285634	.	A	.	.	LowGQX	END=37285635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37285636	.	G	.	.	LowGQX	END=37285637	GT	./.
chr2	37285638	.	C	.	.	LowGQX	END=37285641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37285642	.	A	.	.	LowGQX	.	GT	./.
chr2	37285643	.	A	.	.	LowGQX	END=37285644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37285645	.	G	.	.	LowGQX	END=37285646	GT	./.
chr2	37285647	.	A	.	.	LowGQX	END=37285648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37285649	.	C	.	.	LowGQX	.	GT	./.
chr2	37285650	.	A	.	.	LowGQX	END=37285656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37285657	.	C	.	.	LowGQX	.	GT	./.
chr2	37285658	.	A	.	.	LowGQX	END=37285659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37285660	.	T	.	.	LowGQX	.	GT	./.
chr2	37285661	.	A	.	.	LowGQX	END=37285668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37285669	.	G	.	.	LowGQX	.	GT	./.
chr2	37285670	.	A	.	.	LowGQX	END=37285672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37285673	.	A	.	.	LowGQX	.	GT	./.
chr2	37285674	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37285675	.	C	.	.	LowGQX	.	GT	./.
chr2	37285676	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37285677	.	C	.	.	LowGQX	.	GT	./.
chr2	37285678	.	C	.	.	LowGQX	END=37285679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37285680	.	T	.	.	LowGQX	.	GT	./.
chr2	37285681	.	G	.	.	LowGQX	END=37285685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37285686	.	T	.	.	LowGQX	.	GT	./.
chr2	37285687	.	T	.	.	LowGQX	END=37285692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37285693	.	C	.	.	LowGQX	.	GT	./.
chr2	37285694	.	A	.	.	LowGQX	END=37285701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37285702	.	T	.	.	LowGQX	END=37285703	GT	./.
chr2	37285704	.	C	.	.	LowGQX	END=37285705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37286029	.	A	.	.	LowGQX	END=37286132	GT	./.
chr2	37287722	.	A	.	.	LowGQX	END=37287878	GT	./.
chr2	37289080	.	A	.	.	LowGQX	END=37289179	GT	./.
chr2	37289180	.	A	.	.	LowGQX	END=37289183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37289184	.	T	.	.	LowGQX	.	GT	./.
chr2	37289185	.	A	.	.	LowGQX	END=37289195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37291881	.	A	.	.	LowGQX	END=37292009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37292010	.	C	.	.	LowGQX	END=37292135	GT	./.
chr2	37292856	.	A	.	.	LowGQX	END=37292889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37292890	.	T	G	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	37292891	.	G	.	.	LowGQX	END=37292954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37292955	.	T	.	.	LowGQX	END=37293055	GT	./.
chr2	37295822	.	A	.	.	LowGQX	END=37296075	GT	./.
chr2	37297371	.	A	.	.	LowGQX	END=37297532	GT	./.
chr2	37299251	.	A	.	.	LowGQX	END=37299426	GT	./.
chr2	37302626	.	A	.	.	LowGQX	END=37302779	GT	./.
chr2	37304052	.	A	.	.	LowGQX	END=37304211	GT	./.
chr2	37306261	.	A	.	.	LowGQX	END=37306476	GT	./.
chr2	37310389	.	C	.	.	LowGQX	END=37310559	GT	./.
chr2	37315510	.	A	.	.	LowGQX	END=37315539	GT	./.
chr2	37315540	.	G	.	.	LowGQX	END=37315609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37316782	.	G	.	.	LowGQX	END=37317009	GT	./.
chr2	37317743	.	A	.	.	LowGQX	END=37317756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37317757	.	G	.	.	LowGQX	.	GT	./.
chr2	37317758	.	C	.	.	LowGQX	END=37317774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37317775	.	G	.	.	LowGQX	.	GT	./.
chr2	37317776	.	T	.	.	LowGQX	END=37317815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37317816	.	T	.	.	LowGQX	END=37317894	GT	./.
chr2	37319058	.	G	.	.	LowGQX	END=37319179	GT	./.
chr2	37319303	.	A	.	.	LowGQX	END=37319402	GT	./.
chr2	37321224	.	G	.	.	LowGQX	END=37321338	GT	./.
chr2	37322509	.	C	.	.	LowGQX	END=37322520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37322521	.	G	.	.	LowGQX	.	GT	./.
chr2	37322522	.	C	.	.	LowGQX	END=37322548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37322549	.	A	.	.	LowGQX	END=37322670	GT	./.
chr2	37323329	.	A	.	.	LowGQX	END=37323479	GT	./.
chr2	37334414	.	C	.	.	LowGQX	END=37334449	GT	./.
chr2	37334450	.	T	.	.	LowGQX	END=37334502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37334503	.	A	.	.	LowGQX	.	GT	./.
chr2	37334504	.	G	.	.	LowGQX	END=37334508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37334509	.	C	A	14.90	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.45;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	37334510	.	T	.	.	LowGQX	END=37334540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37334594	.	T	.	.	LowGQX	END=37334605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37334606	.	C	.	.	LowGQX	.	GT	./.
chr2	37334607	.	A	.	.	LowGQX	END=37334610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37334611	.	G	.	.	LowGQX	END=37334612	GT	./.
chr2	37334613	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37334614	.	T	.	.	LowGQX	.	GT	./.
chr2	37334615	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37334616	.	C	.	.	LowGQX	.	GT	./.
chr2	37334617	.	T	.	.	LowGQX	END=37334618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37334619	.	C	.	.	LowGQX	.	GT	./.
chr2	37334620	.	T	.	.	LowGQX	END=37334624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37334625	.	T	.	.	LowGQX	.	GT	./.
chr2	37334626	.	A	.	.	LowGQX	END=37334633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37334634	.	T	.	.	LowGQX	.	GT	./.
chr2	37334635	.	A	.	.	LowGQX	END=37334638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37334639	.	G	.	.	LowGQX	.	GT	./.
chr2	37334640	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37334641	.	G	.	.	LowGQX	.	GT	./.
chr2	37334642	.	A	.	.	LowGQX	END=37334643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37334644	.	G	.	.	LowGQX	.	GT	./.
chr2	37334645	.	A	.	.	LowGQX	END=37334652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37334653	.	C	.	.	LowGQX	.	GT	./.
chr2	37334654	.	C	.	.	LowGQX	END=37334658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37334659	.	G	.	.	LowGQX	END=37334693	GT	./.
chr2	37336335	.	A	.	.	LowGQX	END=37336440	GT	./.
chr2	37341872	.	A	.	.	LowGQX	END=37341906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37341907	.	A	.	.	LowGQX	.	GT	./.
chr2	37341908	.	C	.	.	LowGQX	END=37341968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37341969	.	C	.	.	LowGQX	.	GT	./.
chr2	37341970	.	T	.	.	LowGQX	END=37342004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37342324	.	G	.	.	LowGQX	END=37342327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	37342328	.	C	.	.	LowGQX	.	GT	./.
chr2	37342329	.	T	.	.	LowGQX	END=37342336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	37342337	.	C	.	.	LowGQX	.	GT	./.
chr2	37342338	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr2	37342339	.	C	.	.	LowGQX	.	GT	./.
chr2	37342340	.	G	.	.	LowGQX	END=37342346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	37342347	.	T	.	.	LowGQX	.	GT	./.
chr2	37342348	.	G	.	.	LowGQX	END=37342350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	37342351	.	C	.	.	LowGQX	.	GT	./.
chr2	37342352	.	G	.	.	LowGQX	END=37342353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	37342354	.	C	.	.	LowGQX	END=37342355	GT	./.
chr2	37342356	.	A	.	.	LowGQX	END=37342357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	37342358	.	T	.	.	LowGQX	END=37342423	GT	./.
chr2	37347100	.	A	.	.	LowGQX	END=37347284	GT	./.
chr2	37349647	.	A	.	.	LowGQX	END=37349836	GT	./.
chr2	37353430	.	A	.	.	LowGQX	END=37353595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37353596	.	A	.	.	LowGQX	END=37353599	GT	./.
chr2	37362609	.	C	.	.	LowGQX	END=37362708	GT	./.
chr2	37364094	.	T	.	.	LowGQX	END=37364102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37364103	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	37364104	.	T	.	.	LowGQX	END=37364108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37364109	.	T	.	.	LowGQX	.	GT	./.
chr2	37364110	.	G	.	.	LowGQX	END=37364153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37364154	.	G	.	.	LowGQX	.	GT	./.
chr2	37364155	.	A	.	.	LowGQX	END=37364193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37365410	.	T	.	.	LowGQX	END=37365504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37365505	.	C	.	.	LowGQX	END=37365509	GT	./.
chr2	37365641	.	T	.	.	LowGQX	END=37365740	GT	./.
chr2	37366772	.	A	.	.	LowGQX	END=37366902	GT	./.
chr2	37368664	.	G	.	.	LowGQX	END=37368803	GT	./.
chr2	37368804	.	T	.	.	LowGQX	END=37368846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37373994	.	A	.	.	LowGQX	END=37374118	GT	./.
chr2	37374829	.	A	.	.	LowGQX	END=37374951	GT	./.
chr2	37395036	.	T	.	.	LowGQX	END=37395210	GT	./.
chr2	37398575	.	A	.	.	LowGQX	END=37398735	GT	./.
chr2	37402273	.	A	.	.	LowGQX	END=37402372	GT	./.
chr2	37406549	.	T	.	.	LowGQX	END=37406602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37406603	.	T	.	.	LowGQX	END=37406729	GT	./.
chr2	37410563	.	C	.	.	LowGQX	END=37410662	GT	./.
chr2	37414446	.	A	.	.	LowGQX	END=37414612	GT	./.
chr2	37415583	.	A	.	.	LowGQX	END=37415783	GT	./.
chr2	37426847	.	G	.	.	LowGQX	END=37426962	GT	./.
chr2	37428163	.	A	.	.	LowGQX	END=37428262	GT	./.
chr2	37428776	.	T	.	.	LowGQX	END=37428875	GT	./.
chr2	37428905	.	A	.	.	LowGQX	END=37429048	GT	./.
chr2	37429865	.	C	.	.	LowGQX	END=37430017	GT	./.
chr2	37430021	.	A	.	.	LowGQX	END=37430166	GT	./.
chr2	37430167	.	A	.	.	LowGQX	END=37430172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37438134	.	T	.	.	LowGQX	END=37438233	GT	./.
chr2	37438984	.	A	.	.	LowGQX	END=37439148	GT	./.
chr2	37439149	.	A	.	.	LowGQX	END=37439184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37439457	.	G	.	.	LowGQX	END=37439556	GT	./.
chr2	37440954	.	C	.	.	LowGQX	END=37440962	GT	./.
chr2	37440963	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37440964	.	A	.	.	LowGQX	.	GT	./.
chr2	37440965	.	T	.	.	LowGQX	END=37440992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37440993	.	A	.	.	LowGQX	.	GT	./.
chr2	37440994	.	C	.	.	LowGQX	END=37440995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37440996	.	A	.	.	LowGQX	END=37440997	GT	./.
chr2	37440998	.	A	.	.	LowGQX	END=37441007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37441008	.	A	.	.	LowGQX	.	GT	./.
chr2	37441009	.	A	.	.	LowGQX	END=37441011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37441012	.	A	.	.	LowGQX	.	GT	./.
chr2	37441013	.	G	.	.	LowGQX	END=37441028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37441029	.	A	.	.	LowGQX	.	GT	./.
chr2	37441030	.	T	.	.	LowGQX	END=37441032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37441033	.	T	.	.	LowGQX	.	GT	./.
chr2	37441034	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37441035	.	C	.	.	LowGQX	END=37441036	GT	./.
chr2	37441037	.	C	.	.	LowGQX	END=37441047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37441048	.	C	.	.	LowGQX	.	GT	./.
chr2	37441049	.	T	.	.	LowGQX	END=37441106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37442013	.	A	.	.	LowGQX	END=37442112	GT	./.
chr2	37443268	.	A	.	.	LowGQX	END=37443367	GT	./.
chr2	37443457	.	A	.	.	LowGQX	END=37443563	GT	./.
chr2	37444104	.	C	.	.	LowGQX	END=37444203	GT	./.
chr2	37447523	.	T	.	.	LowGQX	END=37447570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37447571	.	A	.	.	LowGQX	END=37447622	GT	./.
chr2	37449521	.	A	.	.	LowGQX	END=37449629	GT	./.
chr2	37449630	.	T	.	.	LowGQX	END=37449633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37449634	.	T	.	.	LowGQX	.	GT	./.
chr2	37449635	.	G	.	.	LowGQX	END=37449637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37449638	.	T	.	.	LowGQX	.	GT	./.
chr2	37449639	.	G	.	.	LowGQX	END=37449651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37449652	.	T	.	.	LowGQX	END=37449653	GT	./.
chr2	37449654	.	T	.	.	LowGQX	END=37449658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37449659	.	G	.	.	LowGQX	.	GT	./.
chr2	37449660	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37449661	.	C	.	.	LowGQX	.	GT	./.
chr2	37449662	.	T	.	.	LowGQX	END=37449669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37449670	.	C	.	.	LowGQX	.	GT	./.
chr2	37449671	.	A	.	.	LowGQX	END=37449673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37449674	.	T	.	.	LowGQX	.	GT	./.
chr2	37449675	.	G	.	.	LowGQX	END=37449689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37449690	.	T	.	.	LowGQX	.	GT	./.
chr2	37449691	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37449692	.	T	.	.	LowGQX	.	GT	./.
chr2	37449693	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37449694	.	C	.	.	LowGQX	.	GT	./.
chr2	37449695	.	A	.	.	LowGQX	END=37449708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37450311	.	A	.	.	LowGQX	END=37450529	GT	./.
chr2	37450530	.	G	.	.	LowGQX	END=37450536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37450537	.	A	.	.	LowGQX	.	GT	./.
chr2	37450538	.	C	.	.	LowGQX	END=37450546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37454685	.	A	.	.	LowGQX	END=37456181	GT	./.
chr2	37458371	.	C	.	.	LowGQX	END=37458470	GT	./.
chr2	37458553	.	A	.	.	LowGQX	END=37458567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	37458568	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr2	37458569	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr2	37458570	.	C	.	.	LowGQX	END=37458574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	37458575	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr2	37458576	.	C	.	.	LowGQX	END=37458577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	37458578	.	C	.	.	LowGQX	END=37458581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	37458582	.	C	.	.	PASS	END=37458591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	37458592	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	37458593	.	A	.	.	PASS	END=37458609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	37458610	.	C	.	.	PASS	END=37458641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	37458642	.	T	.	.	PASS	END=37458660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr2	37458661	.	C	.	.	PASS	END=37458680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr2	37458681	.	G	.	.	PASS	END=37458684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	37458685	.	T	.	.	PASS	END=37458711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr2	37458712	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:99:60
chr2	37458786	.	C	.	.	PASS	END=37458858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	37458859	.	T	.	.	PASS	END=37458871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	37458872	.	T	.	.	PASS	END=37458888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr2	37458889	.	C	.	.	PASS	END=37458890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:71:60
chr2	37458891	.	G	.	.	PASS	END=37458910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr2	37458911	.	T	.	.	PASS	END=37458922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr2	37458923	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:39:60
chr2	37458924	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:54:60
chr2	37458925	.	G	.	.	PASS	END=37458930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	37458931	.	T	.	.	PASS	END=37458936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr2	37458937	.	T	.	.	PASS	END=37458938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr2	37458939	.	G	.	.	PASS	END=37458940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	37458941	.	A	.	.	PASS	END=37458947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr2	37458948	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:48:60
chr2	37458949	.	G	.	.	PASS	END=37458954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr2	37459198	.	C	.	.	PASS	END=37459207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	37459208	.	C	T	280.89	SB	BaseQRankSum=-0.087;DP=24;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.087;QD=11.70;ReadPosRankSum=-0.087;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:12,12:24:99:311,0,286:60:99:0.500
chr2	37459209	.	A	.	.	PASS	END=37459213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr2	37459214	.	T	.	.	PASS	END=37459233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr2	37459234	.	T	.	.	PASS	END=37459277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr2	37459278	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:75:60
chr2	37459279	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:99:60
chr2	37459280	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:75:60
chr2	37459281	.	A	.	.	PASS	END=37459307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:83:60
chr2	37459308	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:70:60
chr2	37459309	.	C	.	.	PASS	END=37459348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	37459349	.	G	.	.	PASS	END=37459417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	37459418	.	C	.	.	PASS	END=37459460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr2	37463188	.	A	.	.	PASS	END=37463247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:94:60
chr2	37463248	.	G	.	.	PASS	END=37463328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	37463329	.	T	.	.	PASS	END=37463370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	37464849	.	T	.	.	PASS	END=37464958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	37464959	.	G	.	.	PASS	END=37464984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	37464985	.	G	.	.	PASS	END=37465044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	37465045	.	A	.	.	PASS	END=37465057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	37465058	.	T	.	.	PASS	END=37465061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	37468670	.	C	.	.	PASS	END=37468679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr2	37468680	.	A	.	.	PASS	END=37468721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	37468722	.	T	.	.	PASS	END=37468828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	37468829	.	A	.	.	PASS	END=37468870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:90:60
chr2	37468871	.	A	.	.	PASS	END=37468876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr2	37468877	.	G	.	.	PASS	END=37468883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr2	37468884	.	A	.	.	PASS	END=37468887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:54:60
chr2	37468888	.	T	.	.	PASS	END=37468892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:60
chr2	37468893	.	T	.	.	PASS	END=37468895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:39:60
chr2	37468896	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:0:60
chr2	37468897	.	A	.	.	PASS	END=37468901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr2	37468902	.	C	G	4.98	LowGQX;LowQD;SB	BaseQRankSum=0.320;DP=24;Dels=0.00;FS=5.798;HRun=0;HaplotypeScore=10.5743;MQ=60;MQ0=0;MQRankSum=-0.959;QD=0.21;ReadPosRankSum=1.780;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:20,3:24:33.31:33,0,419:60:5:0.130
chr2	37468903	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:12:60
chr2	37468904	.	T	.	.	PASS	END=37468905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:60
chr2	37468906	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:39:60
chr2	37468907	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:54:60
chr2	37468908	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:39:60
chr2	37468909	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:57:60
chr2	37468910	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:18:60
chr2	37468911	.	G	.	.	PASS	END=37468917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr2	37468918	.	G	.	23.31	LowGQX	DP=24;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:19:24:0.84:60:1
chr2	37468919	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:45:60
chr2	37468920	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:27:60
chr2	37468921	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:42:60
chr2	37468922	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr2	37468923	.	A	.	.	LowGQX	END=37468925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:24:60
chr2	37468926	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:18:60
chr2	37468927	.	T	.	.	PASS	END=37468929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr2	37468930	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:27:60
chr2	37468931	.	A	.	.	PASS	END=37468932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr2	37468933	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:18:60
chr2	37468934	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr2	37468935	.	G	.	.	LowGQX	END=37468937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:24:60
chr2	37468938	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr2	37468939	.	T	.	.	LowGQX	END=37468940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:21:60
chr2	37468941	.	A	.	.	PASS	END=37468942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr2	37468943	.	C	.	.	PASS	END=37468945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr2	37468946	.	T	.	.	PASS	END=37468947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr2	37468948	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr2	37468949	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:30:60
chr2	37468950	.	T	.	.	LowGQX	END=37468965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr2	37468966	.	T	.	.	PASS	END=37468968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	37468969	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr2	37468970	.	G	.	.	LowGQX	END=37468972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:60
chr2	37468973	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:36:60
chr2	37468974	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr2	37468975	.	C	.	.	PASS	END=37468976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	37468977	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr2	37468978	.	C	.	.	PASS	END=37468980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr2	37468981	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr2	37468982	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:39:60
chr2	37468983	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr2	37468984	.	C	.	.	PASS	END=37468985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	37469727	.	T	.	.	PASS	END=37469754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	37469755	.	A	.	.	PASS	END=37469822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	37469823	.	T	.	.	PASS	END=37469860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr2	37469861	.	G	.	.	PASS	END=37469887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	37470955	.	G	.	.	PASS	END=37471011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	37471012	.	C	.	.	PASS	END=37471102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	37471103	.	A	.	.	PASS	END=37471153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	37471154	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:64:60
chr2	37471155	.	A	.	.	PASS	END=37471167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr2	37473144	.	G	.	.	PASS	END=37473187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr2	37473188	.	T	.	.	PASS	END=37473277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr2	37473278	.	T	.	.	PASS	END=37473340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr2	37473341	.	A	.	.	PASS	END=37473389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr2	37474548	.	T	.	.	PASS	END=37474569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr2	37474570	.	G	.	.	PASS	END=37474612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr2	37474613	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr2	37474614	.	A	.	.	PASS	END=37474653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	37474654	.	T	.	.	PASS	END=37474692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	37474693	.	C	.	.	PASS	END=37474795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	37474796	.	T	.	.	PASS	END=37474804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	37474805	.	A	.	.	PASS	END=37474814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:89:60
chr2	37474815	.	T	.	.	PASS	END=37474823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr2	37475227	.	C	.	.	PASS	END=37475234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr2	37475235	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:21:60
chr2	37475236	.	C	.	.	PASS	END=37475256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr2	37475257	.	T	.	.	PASS	END=37475273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr2	37475274	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:33:60
chr2	37475275	.	C	.	.	PASS	END=37475287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr2	37475288	.	A	.	.	PASS	END=37475301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr2	37475302	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:57:60
chr2	37475303	.	C	.	.	PASS	END=37475322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	37475323	.	C	.	.	PASS	END=37475341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	37475342	.	T	.	.	PASS	END=37475414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	37475415	.	A	.	.	PASS	END=37475465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	37475466	.	T	.	.	PASS	END=37475498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr2	37475499	.	C	.	.	PASS	END=37475514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr2	37475515	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:54:60
chr2	37475516	.	C	.	.	PASS	END=37475544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr2	37480318	.	G	.	.	PASS	END=37480319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	37480319	.	A	AT	1838.77	PASS	BaseQRankSum=0.685;DP=120;FS=0.705;HRun=2;HaplotypeScore=174.1974;MQ=60;MQ0=0;MQRankSum=-1.159;QD=15.32;ReadPosRankSum=0.658;SB=-721.38	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:65,55:120:99:1878,0,2235:60:99:0.458
chr2	37480320	.	T	.	.	PASS	END=37480354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	37480355	.	C	.	.	PASS	END=37480495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	37481340	.	T	.	.	PASS	END=37481381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	37481382	.	T	.	.	PASS	END=37481424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	37481425	.	A	.	.	PASS	END=37481439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	37483803	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:72:60
chr2	37483804	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:41:18:60
chr2	37483805	.	C	.	.	PASS	END=37483806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:60:60
chr2	37483807	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:81:60
chr2	37483808	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:60:60
chr2	37483809	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:87:60
chr2	37483810	.	C	.	.	PASS	END=37483811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:54:60
chr2	37483812	.	A	.	.	PASS	END=37483815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:72:60
chr2	37483816	.	A	.	.	PASS	END=37483823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr2	37483824	.	C	.	.	PASS	END=37483825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:69:60
chr2	37483826	.	A	.	.	PASS	END=37483838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:60
chr2	37483839	.	G	.	.	PASS	END=37483902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	37483903	.	C	.	.	PASS	END=37483955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	37483956	.	G	.	.	PASS	END=37484001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	37484002	.	G	.	.	PASS	END=37484074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	37486724	.	A	.	.	PASS	END=37486749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	37486750	.	A	.	.	PASS	END=37486795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	37486796	.	A	.	.	PASS	END=37486826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	37487364	.	A	.	.	PASS	END=37487382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	37487383	.	T	.	.	PASS	END=37487517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	37487518	.	G	.	.	PASS	END=37487549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	37487550	.	A	.	.	PASS	END=37487563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	37494571	.	A	.	.	PASS	END=37494573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr2	37494574	.	T	.	.	PASS	END=37494586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	37494587	.	C	.	.	PASS	END=37494589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr2	37494590	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:30:60
chr2	37494591	.	A	G	463.82	PASS	BaseQRankSum=1.713;DP=26;Dels=0.00;FS=6.455;HRun=0;HaplotypeScore=3.8404;MQ=60;MQ0=0;MQRankSum=-0.415;QD=17.84;ReadPosRankSum=1.505;SB=-190.41	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:11,15:26:99:494,0,256:60:99:0.577
chr2	37494592	.	T	.	.	PASS	END=37494604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr2	37494605	.	T	.	.	PASS	END=37494657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	37494658	.	C	.	.	PASS	END=37494674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	37494675	.	T	.	.	PASS	END=37494718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr2	37494719	.	G	.	.	PASS	END=37494730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	37495430	.	G	.	.	LowGQX	END=37495529	GT	./.
chr2	37496699	.	T	.	.	PASS	END=37496714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr2	37496715	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:70:60
chr2	37496716	.	T	.	.	PASS	END=37496742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	37496743	.	G	.	.	PASS	END=37496784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	37496785	.	A	.	.	PASS	END=37496826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	37496827	.	T	.	.	PASS	END=37496832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	37499441	.	A	.	.	PASS	END=37499492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:79:60
chr2	37499493	.	G	.	.	PASS	END=37499507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	37499508	.	A	.	.	PASS	END=37499599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	37501562	.	A	.	.	PASS	END=37501600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	37501601	.	T	.	.	PASS	END=37501763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	37501764	.	T	.	.	PASS	END=37501842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	37502899	.	A	.	.	PASS	END=37502967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	37502968	.	C	.	.	PASS	END=37502998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	37505007	.	A	.	.	PASS	END=37505008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	37505009	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:66:60
chr2	37505010	.	A	.	.	PASS	END=37505041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	37505042	.	C	.	.	PASS	END=37505104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	37505105	.	T	G	1003.01	PASS	BaseQRankSum=-0.361;DP=67;Dels=0.00;FS=2.046;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-0.234;QD=14.97;ReadPosRankSum=-0.259;SB=-467.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:29,38:67:99:1033,0,682:60:99:0.567
chr2	37505106	.	A	.	.	PASS	END=37505134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr2	37506887	.	A	.	.	PASS	END=37506901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	37506902	.	C	.	.	PASS	END=37506938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr2	37506939	.	A	G	2903.09	PASS	BaseQRankSum=-3.243;DP=242;Dels=0.00;FS=2.995;HRun=2;HaplotypeScore=14.2560;MQ=60;MQ0=0;MQRankSum=1.476;QD=12.00;ReadPosRankSum=1.100;SB=-1711.67	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:111,131:242:99:2933,0,2525:60:99:0.541
chr2	37506940	.	T	.	.	PASS	END=37507026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr2	37507027	.	T	.	.	PASS	END=37507048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	37507049	.	T	.	.	PASS	END=37507057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	37507058	.	C	.	.	PASS	END=37507073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	37507074	.	T	.	.	PASS	END=37507086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	37509674	.	A	.	.	PASS	END=37509702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	37509703	.	C	.	.	PASS	END=37509773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	37513318	.	A	.	.	PASS	END=37513353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	37513354	.	C	.	.	PASS	END=37513502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	37513503	.	G	.	.	PASS	END=37513514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr2	37516497	.	A	.	.	PASS	END=37516516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr2	37516517	.	T	.	.	PASS	END=37516641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr2	37516642	.	A	.	.	PASS	END=37516658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr2	37518009	.	A	.	.	PASS	END=37518039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	37518040	.	C	.	.	PASS	END=37518106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	37518107	.	G	.	.	PASS	END=37518144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:88:60
chr2	37520274	.	A	.	.	PASS	END=37520290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:86:60
chr2	37520291	.	C	.	.	PASS	END=37520415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	37520416	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:67:99:60
chr2	37543378	.	A	.	.	PASS	END=37543406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	37543407	.	A	.	.	PASS	END=37543521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr2	37543522	.	G	.	.	PASS	END=37543543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	37543544	.	T	C	1630.85	PASS	BaseQRankSum=-1.930;DP=146;Dels=0.00;FS=0.638;HRun=0;HaplotypeScore=9.6699;MQ=60;MQ0=0;MQRankSum=-0.053;QD=11.17;ReadPosRankSum=-0.624;SB=-748.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:76,69:146:99:1661,0,1927:60:99:0.476
chr2	37543545	.	A	.	.	PASS	END=37543604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	37543605	.	A	.	.	PASS	END=37543628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	37543629	.	A	.	.	PASS	END=37543640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	37543641	.	T	.	.	PASS	END=37543669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:93:60
chr2	37571832	.	C	.	.	LowGQX	END=37571846	GT	./.
chr2	37571847	.	G	.	.	LowGQX	END=37571848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37571849	.	A	.	.	LowGQX	END=37571851	GT	./.
chr2	37571852	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37571853	.	G	.	.	LowGQX	.	GT	./.
chr2	37571854	.	C	.	.	LowGQX	END=37571855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37571856	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr2	37571857	.	C	.	.	LowGQX	.	GT	./.
chr2	37571858	.	C	.	.	LowGQX	END=37571859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37571860	.	G	.	.	LowGQX	END=37571862	GT	./.
chr2	37571863	.	A	.	.	LowGQX	END=37571864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37571865	.	A	.	.	LowGQX	.	GT	./.
chr2	37571866	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37571867	.	T	.	.	LowGQX	.	GT	./.
chr2	37571868	.	C	.	.	LowGQX	END=37571869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37571870	.	G	.	.	LowGQX	.	GT	./.
chr2	37571871	.	A	.	.	LowGQX	END=37571875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37571876	.	T	.	.	LowGQX	.	GT	./.
chr2	37571877	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37571878	.	G	.	.	LowGQX	.	GT	./.
chr2	37571879	.	C	.	.	LowGQX	END=37571881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37571882	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	37571883	.	C	.	.	LowGQX	END=37571884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37571885	.	G	.	.	LowGQX	.	GT	./.
chr2	37571886	.	A	.	.	LowGQX	END=37571888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37571889	.	A	.	.	LowGQX	.	GT	./.
chr2	37571890	.	C	.	.	LowGQX	END=37571892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37571893	.	C	.	.	LowGQX	END=37571895	GT	./.
chr2	37571896	.	C	.	.	LowGQX	END=37571897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37571898	.	C	.	.	LowGQX	.	GT	./.
chr2	37571899	.	G	.	.	LowGQX	END=37571903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37571904	.	G	.	.	LowGQX	.	GT	./.
chr2	37571905	.	G	.	.	LowGQX	END=37571911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37571912	.	T	.	.	LowGQX	.	GT	./.
chr2	37571913	.	C	.	.	LowGQX	END=37571918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37571919	.	G	.	.	LowGQX	END=37571920	GT	./.
chr2	37571921	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	37571922	.	G	.	.	LowGQX	END=37571924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37571925	.	G	.	.	LowGQX	.	GT	./.
chr2	37571926	.	C	.	.	LowGQX	END=37571930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37571931	.	G	.	.	LowGQX	.	GT	./.
chr2	37571932	.	G	.	.	LowGQX	END=37571933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37571934	.	C	.	.	LowGQX	.	GT	./.
chr2	37571935	.	G	.	.	LowGQX	END=37571945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37571946	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	37571947	.	G	.	.	LowGQX	END=37571951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37571952	.	C	.	.	LowGQX	.	GT	./.
chr2	37571953	.	A	.	.	LowGQX	END=37571956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37571957	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	37571958	.	G	.	.	LowGQX	END=37571963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37571964	.	T	.	.	LowGQX	END=37571965	GT	./.
chr2	37571966	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37571967	.	G	.	.	LowGQX	.	GT	./.
chr2	37571968	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37571969	.	G	.	.	LowGQX	.	GT	./.
chr2	37571970	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37571971	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	37571972	.	C	.	.	LowGQX	END=37571977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37571978	.	C	.	.	LowGQX	.	GT	./.
chr2	37571979	.	C	.	.	LowGQX	END=37571980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37571981	.	G	.	.	LowGQX	.	GT	./.
chr2	37571982	.	G	.	.	LowGQX	END=37571985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37571986	.	G	.	.	LowGQX	.	GT	./.
chr2	37571987	.	A	.	.	LowGQX	END=37571995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	37571996	.	T	.	.	LowGQX	.	GT	./.
chr2	37579930	.	A	.	.	LowGQX	END=37580080	GT	./.
chr2	37586721	.	A	.	.	LowGQX	END=37587003	GT	./.
chr2	37594373	.	A	.	.	LowGQX	END=37594553	GT	./.
chr2	37595744	.	T	.	.	LowGQX	END=37595843	GT	./.
chr2	37596826	.	A	.	.	LowGQX	END=37596888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37596889	.	C	.	.	LowGQX	.	GT	./.
chr2	37596890	.	A	.	.	LowGQX	END=37596929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	37599497	.	A	.	.	LowGQX	END=37599617	GT	./.
chr2	37599823	.	A	.	.	LowGQX	END=37599972	GT	./.
chr2	37872964	.	T	.	.	LowGQX	END=37873732	GT	./.
chr2	38156420	.	A	.	.	LowGQX	END=38156783	GT	./.
chr2	38156784	.	C	.	.	LowGQX	END=38156820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38156821	.	T	.	.	LowGQX	.	GT	./.
chr2	38156822	.	T	.	.	LowGQX	END=38156829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38156830	.	C	.	.	LowGQX	.	GT	./.
chr2	38156831	.	A	.	.	LowGQX	END=38156845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38156846	.	T	.	.	LowGQX	.	GT	./.
chr2	38156847	.	T	.	.	LowGQX	END=38156850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38156851	.	A	.	.	LowGQX	.	GT	./.
chr2	38156852	.	G	.	.	LowGQX	END=38156872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38177618	.	G	.	.	LowGQX	END=38177780	GT	./.
chr2	38178374	.	A	.	.	LowGQX	END=38179435	GT	./.
chr2	38201161	.	A	.	.	LowGQX	END=38201359	GT	./.
chr2	38202303	.	A	.	.	LowGQX	END=38202459	GT	./.
chr2	38208354	.	T	.	.	LowGQX	END=38208401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38208402	.	A	.	.	LowGQX	END=38208506	GT	./.
chr2	38216672	.	T	.	.	LowGQX	END=38216771	GT	./.
chr2	38218352	.	G	.	.	LowGQX	.	GT	./.
chr2	38218353	.	C	.	.	LowGQX	END=38218356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38218357	.	T	.	.	LowGQX	END=38218363	GT	./.
chr2	38218364	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38218365	.	A	.	.	LowGQX	END=38218368	GT	./.
chr2	38218369	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38218370	.	T	.	.	LowGQX	END=38218372	GT	./.
chr2	38218373	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38218374	.	T	.	.	LowGQX	.	GT	./.
chr2	38218375	.	A	.	.	LowGQX	END=38218377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38218378	.	G	.	.	LowGQX	END=38218381	GT	./.
chr2	38218382	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38218383	.	C	.	.	LowGQX	END=38218386	GT	./.
chr2	38218387	.	C	.	.	LowGQX	END=38218388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38218389	.	T	.	.	LowGQX	.	GT	./.
chr2	38218390	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38218391	.	T	.	.	LowGQX	END=38218392	GT	./.
chr2	38218393	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38218394	.	C	.	.	LowGQX	.	GT	./.
chr2	38218395	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38218396	.	G	.	.	LowGQX	.	GT	./.
chr2	38218397	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38218398	.	G	.	.	LowGQX	END=38218451	GT	./.
chr2	38224507	.	C	.	.	LowGQX	END=38224666	GT	./.
chr2	38224667	.	G	.	.	LowGQX	END=38224684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38231111	.	C	.	.	LowGQX	END=38231210	GT	./.
chr2	38231270	.	C	.	.	LowGQX	END=38231277	GT	./.
chr2	38231278	.	G	.	.	LowGQX	END=38231348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38231349	.	T	.	.	LowGQX	END=38231369	GT	./.
chr2	38239697	.	A	.	.	LowGQX	END=38239796	GT	./.
chr2	38244306	.	A	.	.	LowGQX	END=38244405	GT	./.
chr2	38244679	.	A	.	.	LowGQX	END=38244778	GT	./.
chr2	38294080	.	C	.	.	LowGQX	END=38294179	GT	./.
chr2	38297814	.	T	.	.	PASS	END=38297816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr2	38297817	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:81:60
chr2	38297818	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:33:60
chr2	38297819	.	T	.	.	PASS	END=38297837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr2	38297838	.	C	.	.	PASS	END=38297856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr2	38297857	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:32:60
chr2	38297858	.	T	.	.	PASS	END=38297864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	38297865	.	T	.	.	PASS	END=38297869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	38297870	.	G	.	.	PASS	END=38297878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	38297879	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:21:60
chr2	38297880	.	C	.	.	PASS	END=38297899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	38297900	.	C	.	.	PASS	END=38297901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr2	38297902	.	G	.	.	PASS	END=38297904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr2	38297905	.	C	.	.	PASS	END=38297916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	38297917	.	T	.	.	PASS	END=38297926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	38297927	.	C	.	.	PASS	END=38297959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	38297960	.	G	.	.	PASS	END=38298001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	38298002	.	C	.	.	PASS	END=38298077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr2	38298078	.	T	.	.	PASS	END=38298138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	38298139	.	T	C	1649.50	PASS	BaseQRankSum=1.240;DP=138;Dels=0.00;FS=7.363;HRun=0;HaplotypeScore=9.6241;MQ=60;MQ0=0;MQRankSum=0.004;QD=11.95;ReadPosRankSum=-1.440;SB=-433.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:75,63:138:99:1679,0,1882:60:99:0.457
chr2	38298140	.	T	.	.	PASS	END=38298149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	38298150	.	A	G	3747.70	PASS	DP=120;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=11.4657;MQ=60;MQ0=0;QD=31.23;SB=-1315.10	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,118:120:99:3748,289,0:60:99:1.000
chr2	38298151	.	T	.	.	PASS	END=38298180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	38298181	.	T	.	.	PASS	END=38298202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	38298203	.	C	G	2644.59	PASS	BaseQRankSum=1.552;DP=77;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.5754;MQ=60;MQ0=0;MQRankSum=0.697;QD=34.35;ReadPosRankSum=-1.102;SB=-609.93	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,76:77:99:2678,208,0:60:99:0.987
chr2	38298204	.	T	.	.	PASS	END=38298254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	38298255	.	A	.	.	PASS	END=38298354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	38298355	.	A	.	.	PASS	END=38298425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:95:60
chr2	38298426	.	C	.	.	PASS	END=38298456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr2	38298457	.	T	.	.	PASS	END=38298488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	38298489	.	T	.	.	PASS	END=38298504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr2	38301438	.	C	.	.	PASS	END=38301443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	38301444	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr2	38301445	.	T	.	.	PASS	END=38301459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	38301460	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr2	38301461	.	C	.	.	PASS	END=38301468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	38301469	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	38301470	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr2	38301471	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr2	38301472	.	C	.	.	PASS	END=38301474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr2	38301475	.	C	.	.	PASS	END=38301481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	38301482	.	G	.	.	PASS	END=38301484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr2	38301485	.	T	.	.	PASS	END=38301491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	38301492	.	G	.	.	PASS	END=38301502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	38301503	.	G	.	.	PASS	END=38301510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr2	38301511	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:48:60
chr2	38301512	.	C	.	.	PASS	END=38301515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr2	38301516	.	A	.	.	PASS	END=38301519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr2	38301520	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:48:60
chr2	38301521	.	G	.	.	PASS	END=38301532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr2	38301533	.	G	.	.	PASS	END=38301594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr2	38301595	.	C	.	.	PASS	END=38301639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	38301640	.	G	.	.	PASS	END=38301671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	38301672	.	G	.	.	PASS	END=38301728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	38301729	.	A	.	.	PASS	END=38301805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	38301806	.	G	.	.	PASS	END=38301846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	38301847	.	C	.	.	PASS	END=38301885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	38301886	.	G	.	.	PASS	END=38301934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	38301935	.	C	.	.	PASS	END=38301991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	38301992	.	C	.	.	PASS	END=38302030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	38302031	.	C	.	.	PASS	END=38302106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	38302107	.	T	.	.	PASS	END=38302176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	38302177	.	C	A	1420.77	PASS	BaseQRankSum=-1.112;DP=114;Dels=0.00;FS=1.672;HRun=0;HaplotypeScore=9.5214;MQ=60;MQ0=0;MQRankSum=0.105;QD=12.46;ReadPosRankSum=1.818;SB=-559.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:52,62:114:99:1451,0,1295:60:99:0.544
chr2	38302178	.	C	.	.	PASS	END=38302222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	38302223	.	G	.	.	PASS	END=38302254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	38302255	.	G	.	.	PASS	END=38302257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	38302258	.	A	.	.	PASS	END=38302316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr2	38302317	.	A	.	.	PASS	END=38302389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr2	38302390	.	G	C	730.58	PASS	BaseQRankSum=3.261;DP=56;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=7.5754;MQ=60;MQ0=0;MQRankSum=-0.994;QD=13.05;ReadPosRankSum=0.156;SB=-353.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,26:56:99:761,0,856:60:99:0.464
chr2	38302391	.	G	.	.	PASS	END=38302428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	38302429	.	C	.	.	PASS	END=38302543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:90:60
chr2	38302544	.	G	A	1011.94	PASS	BaseQRankSum=0.335;DP=75;Dels=0.00;FS=2.188;HRun=1;HaplotypeScore=12.5737;MQ=60;MQ0=0;MQRankSum=-0.729;QD=13.49;ReadPosRankSum=0.027;SB=-433.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,41:75:99:1042,0,886:60:99:0.547
chr2	38302545	.	A	.	.	PASS	END=38302571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	38302572	.	A	.	.	PASS	END=38302582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr2	38523135	.	G	.	.	LowGQX	END=38523162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38523163	.	A	.	.	LowGQX	.	GT	./.
chr2	38523164	.	G	.	.	LowGQX	END=38523195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38523196	.	G	.	.	LowGQX	.	GT	./.
chr2	38523197	.	T	.	.	LowGQX	END=38523199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38523200	.	G	.	.	LowGQX	.	GT	./.
chr2	38523201	.	T	.	.	LowGQX	END=38523206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38523207	.	A	.	.	LowGQX	.	GT	./.
chr2	38523208	.	C	.	.	LowGQX	END=38523255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38523623	.	G	.	.	LowGQX	END=38523734	GT	./.
chr2	38523785	.	A	.	.	LowGQX	END=38523884	GT	./.
chr2	38525284	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	38525285	.	C	.	.	LowGQX	END=38525286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	38525287	.	T	.	.	LowGQX	END=38525288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	38525289	.	T	.	.	LowGQX	END=38525308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	38525309	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	38525310	.	C	.	.	LowGQX	END=38525317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	38525318	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	38525319	.	C	.	.	LowGQX	END=38525322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	38525323	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr2	38525324	.	T	.	.	LowGQX	END=38525327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	38525328	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	38525329	.	A	.	.	LowGQX	END=38525331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	38525332	.	T	.	.	LowGQX	END=38525339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	38525340	.	C	.	.	LowGQX	END=38525349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	38525350	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr2	38525351	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:60
chr2	38525352	.	T	.	.	LowGQX	END=38525356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	38525357	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr2	38525358	.	A	.	.	LowGQX	END=38525363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr2	38525364	.	C	.	.	LowGQX	END=38525375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	38525376	.	A	.	.	LowGQX	END=38525382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr2	38525383	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:60
chr2	38525384	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	38525385	.	T	.	.	PASS	END=38525389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	38525390	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr2	38525391	.	C	.	.	PASS	END=38525397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr2	38525398	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr2	38525399	.	C	.	.	PASS	END=38525400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr2	38525401	.	A	.	.	PASS	END=38525415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	38525416	.	G	.	.	PASS	END=38525438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr2	38525439	.	G	.	.	PASS	END=38525446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr2	38525447	.	G	.	.	PASS	END=38525459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr2	38525460	.	A	.	.	PASS	END=38525572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	38525573	.	C	.	.	PASS	END=38525605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr2	38525606	.	C	.	.	PASS	END=38525627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	38525628	.	A	.	.	PASS	END=38525695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr2	38525696	.	A	.	.	PASS	END=38525700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr2	38525701	.	T	.	.	PASS	END=38525706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr2	38525707	.	C	.	.	PASS	END=38525718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	38525719	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:36:60
chr2	38526325	.	T	.	.	LowGQX	END=38526535	GT	./.
chr2	38527393	.	T	.	.	LowGQX	END=38527440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38527441	.	T	.	.	LowGQX	END=38527492	GT	./.
chr2	38536519	.	A	.	.	LowGQX	END=38536670	GT	./.
chr2	38536671	.	A	.	.	LowGQX	END=38536688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38537409	.	T	.	.	LowGQX	END=38537425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38537426	.	T	.	.	LowGQX	.	GT	./.
chr2	38537427	.	T	.	.	LowGQX	END=38537456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38537457	.	A	.	.	LowGQX	.	GT	./.
chr2	38537458	.	T	.	.	LowGQX	END=38537459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38537460	.	T	.	.	LowGQX	.	GT	./.
chr2	38537461	.	C	.	.	LowGQX	END=38537474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38537475	.	G	.	.	LowGQX	.	GT	./.
chr2	38537476	.	A	.	.	LowGQX	END=38537547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38537548	.	C	.	.	LowGQX	END=38537591	GT	./.
chr2	38540290	.	T	.	.	LowGQX	END=38540389	GT	./.
chr2	38541729	.	A	.	.	LowGQX	END=38541828	GT	./.
chr2	38542402	.	A	.	.	LowGQX	END=38542553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38545675	.	A	.	.	LowGQX	END=38545783	GT	./.
chr2	38546025	.	A	.	.	LowGQX	END=38546044	GT	./.
chr2	38546045	.	G	.	.	LowGQX	END=38546140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38546141	.	A	.	.	LowGQX	.	GT	./.
chr2	38546142	.	C	.	.	LowGQX	END=38546163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38570388	.	T	.	.	LowGQX	.	GT	./.
chr2	38570389	.	T	.	.	LowGQX	END=38570438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38570439	.	C	.	.	LowGQX	END=38570717	GT	./.
chr2	38581209	.	C	.	.	LowGQX	END=38581308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38581309	.	A	.	.	LowGQX	END=38581311	GT	./.
chr2	38581312	.	G	.	.	LowGQX	END=38581367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38585649	.	A	.	.	LowGQX	END=38585663	GT	./.
chr2	38585664	.	C	.	.	LowGQX	END=38585668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38585669	.	A	.	.	LowGQX	.	GT	./.
chr2	38585670	.	A	.	.	LowGQX	END=38585676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38585677	.	A	.	.	LowGQX	.	GT	./.
chr2	38585678	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38585679	.	A	.	.	LowGQX	.	GT	./.
chr2	38585680	.	A	.	.	LowGQX	END=38585686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38585687	.	A	.	.	LowGQX	.	GT	./.
chr2	38585688	.	G	.	.	LowGQX	END=38585692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38585693	.	A	.	.	LowGQX	.	GT	./.
chr2	38585694	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38585695	.	A	.	.	LowGQX	.	GT	./.
chr2	38585696	.	C	.	.	LowGQX	END=38585702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38585703	.	A	.	.	LowGQX	.	GT	./.
chr2	38585704	.	G	.	.	LowGQX	END=38585713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38585714	.	G	.	.	LowGQX	END=38585720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	38585721	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	38585722	.	T	.	.	LowGQX	END=38585744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	38585745	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	38585746	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr2	38585747	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	38585748	.	G	.	.	LowGQX	END=38585757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	38585758	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	38585759	.	A	.	.	LowGQX	END=38585785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	38585786	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	38585787	.	C	.	.	LowGQX	END=38585792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	38585793	.	C	.	.	LowGQX	END=38585803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	38585804	.	A	.	13.53	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.09:60:0
chr2	38585805	.	G	.	.	LowGQX	END=38585807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr2	38585808	.	T	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr2	38585809	.	G	.	.	LowGQX	END=38585830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	38603240	.	T	.	.	LowGQX	END=38603339	GT	./.
chr2	38604233	.	C	.	.	LowGQX	END=38604404	GT	./.
chr2	38791242	.	C	.	.	LowGQX	END=38791345	GT	./.
chr2	38791346	.	A	.	.	LowGQX	END=38791401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38793246	.	C	.	.	LowGQX	END=38793396	GT	./.
chr2	38795336	.	C	.	.	LowGQX	END=38795441	GT	./.
chr2	38795507	.	A	.	.	LowGQX	END=38795606	GT	./.
chr2	38796273	.	A	.	.	LowGQX	END=38796274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796275	.	C	.	.	LowGQX	.	GT	./.
chr2	38796276	.	T	.	.	LowGQX	END=38796285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796286	.	T	.	.	LowGQX	END=38796287	GT	./.
chr2	38796288	.	T	.	.	LowGQX	END=38796291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796292	.	C	.	.	LowGQX	.	GT	./.
chr2	38796293	.	T	.	.	LowGQX	END=38796302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796303	.	A	.	.	LowGQX	.	GT	./.
chr2	38796304	.	A	.	.	LowGQX	END=38796312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796313	.	T	.	.	LowGQX	.	GT	./.
chr2	38796314	.	A	.	.	LowGQX	END=38796317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796318	.	T	.	.	LowGQX	END=38796319	GT	./.
chr2	38796320	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796321	.	T	.	.	LowGQX	.	GT	./.
chr2	38796322	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796323	.	C	.	.	LowGQX	.	GT	./.
chr2	38796324	.	A	.	.	LowGQX	END=38796326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796327	.	A	.	.	LowGQX	END=38796328	GT	./.
chr2	38796329	.	A	.	.	LowGQX	END=38796339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796340	.	G	.	.	LowGQX	END=38796341	GT	./.
chr2	38796342	.	T	.	.	LowGQX	END=38796343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796344	.	G	.	.	LowGQX	.	GT	./.
chr2	38796345	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796346	.	T	.	.	LowGQX	.	GT	./.
chr2	38796347	.	T	.	.	LowGQX	END=38796354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796355	.	T	.	.	LowGQX	.	GT	./.
chr2	38796356	.	A	.	.	LowGQX	END=38796357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796358	.	A	.	.	LowGQX	.	GT	./.
chr2	38796359	.	T	.	.	LowGQX	END=38796360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796361	.	C	.	.	LowGQX	END=38796364	GT	./.
chr2	38796365	.	G	.	.	LowGQX	END=38796366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796367	.	C	.	.	LowGQX	.	GT	./.
chr2	38796368	.	A	.	.	LowGQX	END=38796374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796375	.	G	.	.	LowGQX	.	GT	./.
chr2	38796376	.	T	.	.	LowGQX	END=38796381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796382	.	G	.	.	LowGQX	.	GT	./.
chr2	38796383	.	A	.	.	LowGQX	END=38796384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796385	.	T	.	.	LowGQX	.	GT	./.
chr2	38796386	.	A	.	.	LowGQX	END=38796394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796395	.	C	.	.	LowGQX	.	GT	./.
chr2	38796396	.	A	.	.	LowGQX	END=38796397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796398	.	T	.	.	LowGQX	.	GT	./.
chr2	38796399	.	G	.	.	LowGQX	END=38796400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796401	.	A	.	.	LowGQX	.	GT	./.
chr2	38796402	.	A	.	.	LowGQX	END=38796409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796410	.	G	.	.	LowGQX	END=38796447	GT	./.
chr2	38796448	.	T	.	.	LowGQX	END=38796450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796451	.	G	.	.	LowGQX	.	GT	./.
chr2	38796452	.	A	.	.	LowGQX	END=38796456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796457	.	C	.	.	LowGQX	.	GT	./.
chr2	38796458	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796459	.	G	.	.	LowGQX	.	GT	./.
chr2	38796460	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796461	.	A	.	.	LowGQX	.	GT	./.
chr2	38796462	.	T	.	.	LowGQX	END=38796469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796470	.	A	.	.	LowGQX	END=38796471	GT	./.
chr2	38796472	.	A	.	.	LowGQX	END=38796474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796475	.	C	.	.	LowGQX	END=38796476	GT	./.
chr2	38796477	.	C	.	.	LowGQX	END=38796478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38796944	.	A	.	.	LowGQX	END=38797069	GT	./.
chr2	38800280	.	A	.	.	LowGQX	END=38800599	GT	./.
chr2	38804589	.	C	.	.	LowGQX	END=38804688	GT	./.
chr2	38805071	.	A	.	.	LowGQX	END=38805170	GT	./.
chr2	38809013	.	G	.	.	LowGQX	END=38809129	GT	./.
chr2	38809212	.	A	.	.	LowGQX	END=38809301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38809302	.	G	.	.	LowGQX	END=38809317	GT	./.
chr2	38810977	.	G	.	.	LowGQX	END=38811076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38812784	.	A	.	.	LowGQX	END=38813025	GT	./.
chr2	38818670	.	A	.	.	LowGQX	END=38818792	GT	./.
chr2	38826993	.	A	.	.	LowGQX	END=38827092	GT	./.
chr2	38829568	.	G	.	.	LowGQX	END=38829622	GT	./.
chr2	38829623	.	C	.	.	LowGQX	END=38829626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829627	.	G	.	.	LowGQX	.	GT	./.
chr2	38829628	.	G	.	.	LowGQX	END=38829635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829636	.	C	.	.	LowGQX	.	GT	./.
chr2	38829637	.	T	.	.	LowGQX	END=38829639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829640	.	C	.	.	LowGQX	.	GT	./.
chr2	38829641	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829642	.	G	.	.	LowGQX	END=38829643	GT	./.
chr2	38829644	.	C	.	.	LowGQX	END=38829647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829648	.	T	.	.	LowGQX	END=38829649	GT	./.
chr2	38829650	.	T	.	.	LowGQX	END=38829661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829662	.	G	.	.	LowGQX	.	GT	./.
chr2	38829663	.	C	.	.	LowGQX	END=38829664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829665	.	G	.	.	LowGQX	.	GT	./.
chr2	38829666	.	A	.	.	LowGQX	END=38829667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829668	.	T	.	.	LowGQX	END=38829672	GT	./.
chr2	38829673	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829674	.	A	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr2	38829675	.	T	.	.	LowGQX	END=38829678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829679	.	C	.	.	LowGQX	END=38829681	GT	./.
chr2	38829682	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829683	.	T	.	.	LowGQX	.	GT	./.
chr2	38829684	.	C	.	.	LowGQX	END=38829685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829686	.	T	.	.	LowGQX	.	GT	./.
chr2	38829687	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829688	.	G	.	.	LowGQX	END=38829689	GT	./.
chr2	38829690	.	T	.	.	LowGQX	END=38829694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829695	.	A	.	.	LowGQX	.	GT	./.
chr2	38829696	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829697	.	A	.	.	LowGQX	.	GT	./.
chr2	38829698	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829699	.	G	.	.	LowGQX	.	GT	./.
chr2	38829700	.	C	.	.	LowGQX	END=38829702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829703	.	G	.	.	LowGQX	.	GT	./.
chr2	38829704	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829705	.	C	.	.	LowGQX	.	GT	./.
chr2	38829706	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829707	.	T	.	.	LowGQX	.	GT	./.
chr2	38829708	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829709	.	G	.	.	LowGQX	.	GT	./.
chr2	38829710	.	C	.	.	LowGQX	END=38829713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829714	.	C	.	.	LowGQX	.	GT	./.
chr2	38829715	.	G	.	.	LowGQX	END=38829718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829719	.	T	.	.	LowGQX	.	GT	./.
chr2	38829720	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829721	.	C	.	.	LowGQX	END=38829724	GT	./.
chr2	38829725	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829726	.	C	.	.	LowGQX	.	GT	./.
chr2	38829727	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829728	.	T	.	.	LowGQX	.	GT	./.
chr2	38829729	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829730	.	C	.	.	LowGQX	.	GT	./.
chr2	38829731	.	T	.	.	LowGQX	END=38829733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829734	.	T	.	.	LowGQX	.	GT	./.
chr2	38829735	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829736	.	C	.	.	LowGQX	END=38829737	GT	./.
chr2	38829738	.	T	.	.	LowGQX	END=38829739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829740	.	T	.	.	LowGQX	.	GT	./.
chr2	38829741	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829742	.	C	.	.	LowGQX	.	GT	./.
chr2	38829743	.	C	.	.	LowGQX	END=38829746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829747	.	G	.	.	LowGQX	.	GT	./.
chr2	38829748	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829749	.	G	.	.	LowGQX	END=38829751	GT	./.
chr2	38829752	.	G	.	.	LowGQX	END=38829754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829755	.	G	.	.	LowGQX	END=38829757	GT	./.
chr2	38829758	.	G	.	.	LowGQX	END=38829759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829760	.	G	.	.	LowGQX	END=38829762	GT	./.
chr2	38829763	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829764	.	G	.	.	LowGQX	.	GT	./.
chr2	38829765	.	A	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr2	38829766	.	C	.	.	LowGQX	END=38829768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829769	.	G	.	.	LowGQX	END=38829770	GT	./.
chr2	38829954	.	G	.	.	LowGQX	END=38829973	GT	./.
chr2	38829974	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829975	.	G	.	.	LowGQX	END=38829978	GT	./.
chr2	38829979	.	C	.	.	LowGQX	END=38829981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829982	.	C	.	.	LowGQX	.	GT	./.
chr2	38829983	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829984	.	G	.	.	LowGQX	END=38829988	GT	./.
chr2	38829989	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829990	.	C	.	.	LowGQX	.	GT	./.
chr2	38829991	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829992	.	C	.	.	LowGQX	END=38829994	GT	./.
chr2	38829995	.	T	.	.	LowGQX	END=38829996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38829997	.	A	.	.	LowGQX	END=38829998	GT	./.
chr2	38829999	.	C	.	.	LowGQX	END=38830004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38830005	.	A	.	.	LowGQX	END=38830007	GT	./.
chr2	38830008	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38830009	.	T	.	.	LowGQX	.	GT	./.
chr2	38830010	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38830011	.	C	.	.	LowGQX	.	GT	./.
chr2	38830012	.	A	.	.	LowGQX	END=38830014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38830015	.	C	.	.	LowGQX	END=38830016	GT	./.
chr2	38830017	.	C	.	.	LowGQX	END=38830021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38830022	.	T	.	.	LowGQX	.	GT	./.
chr2	38830023	.	C	.	.	LowGQX	END=38830029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38830030	.	C	.	.	LowGQX	.	GT	./.
chr2	38830031	.	T	.	.	LowGQX	END=38830032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38830033	.	C	.	.	LowGQX	.	GT	./.
chr2	38830034	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38830035	.	T	.	.	LowGQX	END=38830036	GT	./.
chr2	38830037	.	T	.	.	LowGQX	END=38830043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38830044	.	C	.	.	LowGQX	.	GT	./.
chr2	38830045	.	C	.	.	LowGQX	END=38830053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38893302	.	C	.	.	LowGQX	END=38893495	GT	./.
chr2	38903052	.	A	.	.	LowGQX	END=38903210	GT	./.
chr2	38907136	.	C	.	.	LowGQX	END=38907183	GT	./.
chr2	38907184	.	T	.	.	LowGQX	END=38907191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38907192	.	T	.	.	LowGQX	END=38907193	GT	./.
chr2	38907194	.	T	.	.	LowGQX	END=38907196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38907197	.	C	.	.	LowGQX	.	GT	./.
chr2	38907198	.	C	.	.	LowGQX	END=38907208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38907209	.	T	.	.	LowGQX	.	GT	./.
chr2	38907210	.	G	.	.	LowGQX	END=38907213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38907214	.	T	.	.	LowGQX	.	GT	./.
chr2	38907215	.	G	.	.	LowGQX	END=38907218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38907219	.	T	.	.	LowGQX	.	GT	./.
chr2	38907220	.	G	.	.	LowGQX	END=38907221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38907222	.	G	.	.	LowGQX	.	GT	./.
chr2	38907223	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38907224	.	G	.	.	LowGQX	.	GT	./.
chr2	38907225	.	A	.	.	LowGQX	END=38907229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38907230	.	G	.	.	LowGQX	.	GT	./.
chr2	38907231	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38907232	.	C	.	.	LowGQX	.	GT	./.
chr2	38907233	.	T	.	.	LowGQX	END=38907241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38907242	.	C	.	.	LowGQX	.	GT	./.
chr2	38907243	.	C	.	.	LowGQX	END=38907250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38907251	.	C	.	.	LowGQX	END=38907252	GT	./.
chr2	38907253	.	T	.	.	LowGQX	END=38907263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38907264	.	G	.	.	LowGQX	.	GT	./.
chr2	38907265	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38907266	.	T	.	.	LowGQX	.	GT	./.
chr2	38907267	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38907268	.	C	.	.	LowGQX	.	GT	./.
chr2	38907269	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38907270	.	C	.	.	LowGQX	END=38907272	GT	./.
chr2	38907273	.	T	.	.	LowGQX	END=38907279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38907280	.	C	.	.	LowGQX	.	GT	./.
chr2	38907281	.	C	.	.	LowGQX	END=38907284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38907285	.	C	.	.	LowGQX	END=38907286	GT	./.
chr2	38907287	.	A	.	.	LowGQX	END=38907290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38907291	.	G	.	.	LowGQX	.	GT	./.
chr2	38907292	.	C	.	.	LowGQX	END=38907295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38908420	.	A	.	.	LowGQX	END=38908630	GT	./.
chr2	38909358	.	T	.	.	LowGQX	END=38909457	GT	./.
chr2	38916946	.	T	.	.	LowGQX	END=38917045	GT	./.
chr2	38925473	.	T	.	.	LowGQX	END=38925572	GT	./.
chr2	38956696	.	A	.	.	LowGQX	END=38956776	GT	./.
chr2	38956777	.	T	.	.	LowGQX	END=38956793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38956794	.	A	.	.	LowGQX	.	GT	./.
chr2	38956795	.	C	.	.	LowGQX	END=38956837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38956838	.	A	.	.	LowGQX	.	GT	./.
chr2	38956839	.	G	.	.	LowGQX	END=38956841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38958875	.	A	.	.	LowGQX	END=38958964	GT	./.
chr2	38958965	.	A	.	.	LowGQX	END=38959007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38959008	.	G	.	.	LowGQX	.	GT	./.
chr2	38959009	.	T	.	.	LowGQX	END=38959021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38959022	.	A	.	.	LowGQX	.	GT	./.
chr2	38959023	.	C	.	.	LowGQX	END=38959053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38960619	.	C	.	.	LowGQX	END=38960718	GT	./.
chr2	38968229	.	A	.	.	LowGQX	END=38968328	GT	./.
chr2	38972253	.	C	.	.	LowGQX	END=38972352	GT	./.
chr2	38973254	.	G	.	.	LowGQX	END=38973276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38973277	.	T	.	.	LowGQX	END=38973353	GT	./.
chr2	38973813	.	G	.	.	LowGQX	END=38973832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38973833	.	T	.	.	LowGQX	.	GT	./.
chr2	38973834	.	A	.	.	LowGQX	END=38973844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38973845	.	G	T	14.85	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.42;SB=-25.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	38973846	.	G	.	.	LowGQX	END=38973858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38973859	.	C	.	.	LowGQX	.	GT	./.
chr2	38973860	.	C	.	.	LowGQX	END=38973875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38973876	.	A	.	.	LowGQX	.	GT	./.
chr2	38973877	.	C	.	.	LowGQX	END=38973887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38973888	.	A	.	.	LowGQX	.	GT	./.
chr2	38973889	.	T	.	.	LowGQX	END=38973898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38973899	.	A	.	.	LowGQX	.	GT	./.
chr2	38973900	.	A	.	.	LowGQX	END=38973908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38973909	.	A	.	.	LowGQX	.	GT	./.
chr2	38973910	.	A	.	.	LowGQX	END=38973912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38974193	.	G	.	.	LowGQX	END=38974292	GT	./.
chr2	38975187	.	A	.	.	LowGQX	END=38975301	GT	./.
chr2	38975649	.	A	.	.	LowGQX	END=38975661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	38975662	.	T	.	.	LowGQX	END=38975808	GT	./.
chr2	38976257	.	G	.	.	LowGQX	END=38976356	GT	./.
chr2	38976427	.	C	.	.	LowGQX	END=38976526	GT	./.
chr2	38976661	.	A	.	.	LowGQX	END=38976844	GT	./.
chr2	38976845	.	A	.	.	LowGQX	END=38976849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	38977154	.	A	.	.	LowGQX	END=38977338	GT	./.
chr2	38978335	.	C	.	.	LowGQX	END=38978434	GT	./.
chr2	39006131	.	T	.	.	LowGQX	END=39006262	GT	./.
chr2	39006388	.	T	.	.	LowGQX	END=39006583	GT	./.
chr2	39008657	.	A	.	.	LowGQX	END=39009036	GT	./.
chr2	39025439	.	T	.	.	LowGQX	END=39025586	GT	./.
chr2	39029855	.	A	.	.	LowGQX	END=39030059	GT	./.
chr2	39033699	.	A	.	.	LowGQX	END=39033837	GT	./.
chr2	39040951	.	A	.	.	LowGQX	END=39041009	GT	./.
chr2	39041010	.	G	.	.	LowGQX	END=39041050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39042661	.	A	.	.	LowGQX	END=39042799	GT	./.
chr2	39043274	.	G	.	.	LowGQX	END=39043287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	39043288	.	C	.	.	LowGQX	.	GT	./.
chr2	39043289	.	T	.	.	LowGQX	END=39043291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	39043292	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	39043293	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	39043294	.	C	.	.	LowGQX	.	GT	./.
chr2	39043295	.	C	.	.	LowGQX	END=39043296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	39043297	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	39043298	.	C	.	.	LowGQX	END=39043303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	39043304	.	G	.	.	LowGQX	.	GT	./.
chr2	39043305	.	G	.	.	LowGQX	END=39043308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	39043309	.	T	.	.	LowGQX	.	GT	./.
chr2	39043310	.	G	.	.	LowGQX	END=39043312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	39043313	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	39043314	.	G	.	.	LowGQX	END=39043316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	39043317	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	39043318	.	A	.	.	LowGQX	END=39043326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	39043327	.	C	.	.	LowGQX	END=39043373	GT	./.
chr2	39046011	.	C	.	.	LowGQX	END=39046110	GT	./.
chr2	39046189	.	A	.	.	LowGQX	END=39046288	GT	./.
chr2	39050133	.	A	.	.	LowGQX	END=39050413	GT	./.
chr2	39052987	.	A	.	.	LowGQX	END=39053107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39053108	.	T	.	.	LowGQX	END=39053191	GT	./.
chr2	39053656	.	A	.	.	LowGQX	END=39053833	GT	./.
chr2	39055480	.	A	.	.	LowGQX	END=39055580	GT	./.
chr2	39064971	.	A	.	.	LowGQX	END=39065091	GT	./.
chr2	39065883	.	T	.	.	LowGQX	END=39065982	GT	./.
chr2	39070145	.	A	.	.	LowGQX	END=39070227	GT	./.
chr2	39070228	.	G	.	.	LowGQX	END=39070284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39070285	.	C	.	.	LowGQX	.	GT	./.
chr2	39070286	.	T	.	.	LowGQX	END=39070317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39070318	.	A	.	.	LowGQX	.	GT	./.
chr2	39070319	.	C	.	.	LowGQX	END=39070354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	39074139	.	T	.	.	LowGQX	END=39074238	GT	./.
chr2	39075409	.	A	.	.	LowGQX	END=39075546	GT	./.
chr2	39081194	.	A	.	.	LowGQX	END=39081377	GT	./.
chr2	39082127	.	C	.	.	LowGQX	END=39082461	GT	./.
chr2	39083480	.	A	.	.	LowGQX	END=39083505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39083506	.	A	.	.	LowGQX	.	GT	./.
chr2	39083507	.	C	.	.	LowGQX	END=39083523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39083524	.	A	.	.	LowGQX	.	GT	./.
chr2	39083525	.	A	.	.	LowGQX	END=39083534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39083535	.	G	.	.	LowGQX	END=39083605	GT	./.
chr2	39085801	.	A	.	.	LowGQX	END=39086000	GT	./.
chr2	39088139	.	A	.	.	LowGQX	END=39088906	GT	./.
chr2	39088907	.	C	.	.	LowGQX	END=39088916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39088917	.	G	.	.	LowGQX	.	GT	./.
chr2	39088918	.	C	.	.	LowGQX	END=39088931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39088932	.	T	.	.	LowGQX	.	GT	./.
chr2	39088933	.	C	.	.	LowGQX	END=39088937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39088938	.	A	.	.	LowGQX	END=39088939	GT	./.
chr2	39088940	.	C	.	.	LowGQX	END=39088948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39088949	.	C	.	.	LowGQX	.	GT	./.
chr2	39088950	.	G	.	.	LowGQX	END=39088951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39088952	.	T	.	.	LowGQX	.	GT	./.
chr2	39088953	.	T	.	.	LowGQX	END=39088964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39088965	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	39088966	.	T	.	.	LowGQX	END=39088972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39088973	.	A	.	.	LowGQX	.	GT	./.
chr2	39088974	.	C	.	.	LowGQX	END=39088976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39088977	.	T	.	.	LowGQX	.	GT	./.
chr2	39088978	.	A	.	.	LowGQX	END=39088981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	39089285	.	A	.	.	LowGQX	END=39089401	GT	./.
chr2	39089402	.	G	.	.	LowGQX	END=39089477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39090501	.	A	.	.	LowGQX	END=39090663	GT	./.
chr2	39095322	.	A	.	.	LowGQX	END=39095549	GT	./.
chr2	39107779	.	A	.	.	LowGQX	END=39107878	GT	./.
chr2	39108542	.	T	.	.	LowGQX	END=39108621	GT	./.
chr2	39108622	.	G	.	.	LowGQX	END=39108660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39108661	.	C	.	.	LowGQX	.	GT	./.
chr2	39108662	.	T	.	.	LowGQX	END=39108670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39108671	.	A	.	.	LowGQX	END=39108672	GT	./.
chr2	39108673	.	A	.	.	LowGQX	END=39108680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39108681	.	A	.	.	LowGQX	.	GT	./.
chr2	39108682	.	A	.	.	LowGQX	END=39108715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39108716	.	A	.	.	LowGQX	.	GT	./.
chr2	39108717	.	T	.	.	LowGQX	END=39108719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39109553	.	G	.	.	LowGQX	END=39109597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39109598	.	G	.	.	LowGQX	END=39109656	GT	./.
chr2	39117007	.	T	.	.	LowGQX	END=39117106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146551	.	G	.	.	LowGQX	.	GT	./.
chr2	39146552	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146553	.	T	.	.	LowGQX	END=39146554	GT	./.
chr2	39146555	.	A	.	.	LowGQX	END=39146556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146557	.	G	.	.	LowGQX	.	GT	./.
chr2	39146558	.	A	.	.	LowGQX	END=39146563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146564	.	C	.	.	LowGQX	.	GT	./.
chr2	39146565	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146566	.	G	.	.	LowGQX	END=39146567	GT	./.
chr2	39146568	.	A	.	.	LowGQX	END=39146570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146571	.	A	.	.	LowGQX	END=39146572	GT	./.
chr2	39146573	.	A	.	.	LowGQX	END=39146576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146577	.	G	.	.	LowGQX	.	GT	./.
chr2	39146578	.	T	.	.	LowGQX	END=39146580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146581	.	C	.	.	LowGQX	.	GT	./.
chr2	39146582	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146583	.	G	.	.	LowGQX	.	GT	./.
chr2	39146584	.	G	.	.	LowGQX	END=39146591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146592	.	G	.	.	LowGQX	.	GT	./.
chr2	39146593	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146594	.	A	.	.	LowGQX	.	GT	./.
chr2	39146595	.	A	.	.	LowGQX	END=39146598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146599	.	C	.	.	LowGQX	.	GT	./.
chr2	39146600	.	C	.	.	LowGQX	END=39146610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146611	.	A	.	.	LowGQX	.	GT	./.
chr2	39146612	.	A	.	.	LowGQX	END=39146613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146614	.	G	.	.	LowGQX	END=39146615	GT	./.
chr2	39146616	.	C	.	.	LowGQX	END=39146619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146620	.	T	.	.	LowGQX	.	GT	./.
chr2	39146621	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146622	.	T	.	.	LowGQX	.	GT	./.
chr2	39146623	.	T	.	.	LowGQX	END=39146625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146626	.	C	.	.	LowGQX	.	GT	./.
chr2	39146627	.	T	.	.	LowGQX	END=39146628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146629	.	T	.	.	LowGQX	.	GT	./.
chr2	39146630	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146631	.	T	.	.	LowGQX	.	GT	./.
chr2	39146632	.	C	.	.	LowGQX	END=39146634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146635	.	G	.	.	LowGQX	.	GT	./.
chr2	39146636	.	C	.	.	LowGQX	END=39146637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146638	.	T	.	.	LowGQX	END=39146639	GT	./.
chr2	39146640	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146641	.	G	.	.	LowGQX	END=39146642	GT	./.
chr2	39146643	.	A	.	.	LowGQX	END=39146644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146645	.	T	.	.	LowGQX	.	GT	./.
chr2	39146646	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146647	.	A	.	.	LowGQX	.	GT	./.
chr2	39146648	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39146649	.	G	.	.	LowGQX	END=39146650	GT	./.
chr2	39148490	.	T	.	.	LowGQX	END=39148510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39148511	.	G	.	.	LowGQX	.	GT	./.
chr2	39148512	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39148513	.	A	.	.	LowGQX	.	GT	./.
chr2	39148514	.	G	.	.	LowGQX	END=39148559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39148560	.	A	.	.	LowGQX	.	GT	./.
chr2	39148561	.	C	.	.	LowGQX	END=39148589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	39156047	.	G	.	.	LowGQX	END=39156079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39156080	.	T	.	.	LowGQX	.	GT	./.
chr2	39156081	.	T	.	.	LowGQX	END=39156163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39156164	.	C	.	.	LowGQX	END=39156212	GT	./.
chr2	39156849	.	G	.	.	LowGQX	END=39156971	GT	./.
chr2	39158249	.	G	.	.	LowGQX	END=39158392	GT	./.
chr2	39162896	.	A	.	.	LowGQX	END=39162917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr2	39162918	.	C	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr2	39162919	.	A	.	.	LowGQX	END=39162926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr2	39162927	.	A	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr2	39162928	.	G	.	.	LowGQX	END=39162941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr2	39162942	.	G	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr2	39162943	.	G	.	.	LowGQX	END=39162950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	39162951	.	A	.	.	LowGQX	END=39162983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	39162984	.	C	.	.	LowGQX	END=39162995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	39164475	.	G	.	.	LowGQX	END=39164565	GT	./.
chr2	39164566	.	T	.	.	LowGQX	END=39164700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39170991	.	A	.	.	LowGQX	END=39171171	GT	./.
chr2	39178129	.	G	.	.	LowGQX	END=39178262	GT	./.
chr2	39180295	.	T	.	.	LowGQX	END=39180394	GT	./.
chr2	39181506	.	T	.	.	LowGQX	END=39181605	GT	./.
chr2	39184039	.	G	.	.	LowGQX	END=39184129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39184130	.	A	.	.	LowGQX	END=39184188	GT	./.
chr2	39185174	.	G	.	.	LowGQX	END=39185339	GT	./.
chr2	39186981	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39186982	.	A	.	.	LowGQX	.	GT	./.
chr2	39186983	.	C	.	.	LowGQX	END=39187117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39187118	.	T	.	.	LowGQX	.	GT	./.
chr2	39187119	.	T	.	.	LowGQX	END=39187138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39187139	.	G	.	.	LowGQX	END=39187795	GT	./.
chr2	39193146	.	G	.	.	LowGQX	END=39193286	GT	./.
chr2	39198987	.	G	.	.	LowGQX	END=39199086	GT	./.
chr2	39200854	.	G	.	.	LowGQX	END=39200984	GT	./.
chr2	39212914	.	G	.	.	PASS	END=39212918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	39212919	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:24:60
chr2	39212920	.	A	.	.	PASS	END=39212931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr2	39212932	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:75:60
chr2	39212933	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:18:60
chr2	39212934	.	T	.	.	PASS	END=39212935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	39212936	.	G	.	.	PASS	END=39212942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr2	39212943	.	A	.	.	PASS	END=39212947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr2	39212948	.	T	.	.	PASS	END=39212982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	39212983	.	C	.	.	PASS	END=39213006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	39213007	.	G	.	.	PASS	END=39213017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	39213018	.	G	.	.	PASS	END=39213053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	39213054	.	G	.	.	PASS	END=39213083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr2	39213084	.	G	.	.	PASS	END=39213183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:245:99:60
chr2	39213184	.	A	.	.	PASS	END=39213324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:279:99:60
chr2	39213325	.	T	.	.	PASS	END=39213338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr2	39213339	.	T	.	.	PASS	END=39213356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr2	39213357	.	T	.	.	PASS	END=39213380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	39213381	.	A	.	.	PASS	END=39213404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	39213405	.	T	.	.	PASS	END=39213419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	39213420	.	G	.	.	PASS	END=39213432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	39213433	.	A	.	.	PASS	END=39213442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr2	39213443	.	T	.	.	PASS	END=39213445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr2	39213446	.	T	.	.	PASS	END=39213457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr2	39213458	.	T	.	.	PASS	END=39213489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	39213490	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr2	39213491	.	A	.	.	PASS	END=39213497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	39214563	.	T	.	.	PASS	END=39214584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	39214585	.	T	.	.	PASS	END=39214710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr2	39214711	.	A	.	.	PASS	END=39214771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr2	39214772	.	T	.	.	PASS	END=39214783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	39216360	.	G	.	.	PASS	END=39216434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:90:60
chr2	39216435	.	G	.	.	PASS	END=39216456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	39216457	.	T	.	.	PASS	END=39216468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	39216469	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:70:60
chr2	39216470	.	A	.	.	PASS	END=39216493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	39216494	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:69:60
chr2	39216495	.	A	.	.	PASS	END=39216505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	39216506	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:60:60
chr2	39222213	.	C	.	.	PASS	END=39222215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr2	39222216	.	G	.	.	PASS	END=39222220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr2	39222221	.	G	.	.	PASS	END=39222227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr2	39222228	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:0:60
chr2	39222229	.	A	.	.	PASS	END=39222259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr2	39222260	.	C	.	.	PASS	END=39222285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr2	39222286	.	A	.	.	PASS	END=39222301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr2	39222302	.	C	.	.	PASS	END=39222314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	39222315	.	T	.	.	PASS	END=39222326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	39222327	.	C	.	.	PASS	END=39222390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	39222391	.	T	.	.	PASS	END=39222454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	39222455	.	T	.	.	PASS	END=39222467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	39222468	.	C	.	.	PASS	END=39222484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:96:60
chr2	39222485	.	G	.	.	PASS	END=39222517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	39222518	.	T	.	.	PASS	END=39222555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr2	39222556	.	A	.	.	PASS	END=39222564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	39222565	.	A	.	.	PASS	END=39222576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	39222577	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:45:60
chr2	39222578	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:30:60
chr2	39222579	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:45:60
chr2	39224012	.	A	.	.	PASS	END=39224023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	39224024	.	G	.	.	PASS	END=39224116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	39224117	.	A	.	.	PASS	END=39224158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	39224159	.	A	.	.	PASS	END=39224187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	39224188	.	A	.	.	PASS	END=39224230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	39224343	.	G	.	.	PASS	END=39224350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	39224351	.	G	T	1997.43	PASS	BaseQRankSum=-0.119;DP=58;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.9462;MQ=60;MQ0=0;MQRankSum=0.597;QD=34.44;ReadPosRankSum=-0.060;SB=-471.78	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,57:58:99:2030,126,0:60:99:0.983
chr2	39224352	.	A	.	.	PASS	END=39224415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:81:60
chr2	39224416	.	A	.	.	PASS	END=39224507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	39224508	.	T	.	.	PASS	END=39224537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	39224538	.	T	.	.	PASS	END=39224582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:60
chr2	39224583	.	A	.	.	PASS	END=39224615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr2	39224615	.	G	GT	1186.33	PASS	DP=40;FS=0.000;HRun=7;HaplotypeScore=38.5038;MQ=60;MQ0=0;QD=29.66;SB=-61.46	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,38:40:99:1228,114,0:60:99:0.950
chr2	39224616	.	T	.	.	PASS	END=39224617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr2	39233502	.	G	.	.	PASS	END=39233678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	39233679	.	A	.	.	PASS	END=39233721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	39234121	.	T	.	.	PASS	END=39234166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:89:60
chr2	39234167	.	C	.	.	PASS	END=39234189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	39234190	.	T	.	.	PASS	END=39234255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	39234256	.	T	.	.	PASS	END=39234333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	39234334	.	T	.	.	PASS	END=39234378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr2	39234379	.	A	.	.	PASS	END=39234385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	39237674	.	T	.	.	PASS	END=39237705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	39237706	.	G	.	.	PASS	END=39237840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	39237841	.	A	.	.	PASS	END=39237867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr2	39237868	.	T	.	.	PASS	END=39237876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	39237877	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:45:60
chr2	39237878	.	T	.	.	PASS	END=39237894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	39237895	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:66:60
chr2	39239216	.	A	.	.	LowGQX	END=39239221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr2	39239222	.	A	.	.	PASS	END=39239223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	39239224	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr2	39239225	.	T	.	.	PASS	END=39239230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	39239231	.	G	.	.	PASS	END=39239246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr2	39239247	.	T	.	.	PASS	END=39239258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr2	39239259	.	T	.	.	PASS	END=39239263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr2	39239264	.	T	.	.	PASS	END=39239279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	39239280	.	A	.	.	PASS	END=39239316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr2	39239317	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:99:60
chr2	39239318	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:75:60
chr2	39239319	.	G	.	.	PASS	END=39239358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr2	39239359	.	G	.	.	PASS	END=39239422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	39239423	.	T	.	.	PASS	END=39239439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	39239440	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:67:60
chr2	39239441	.	C	.	.	PASS	END=39239490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr2	39239491	.	T	.	.	PASS	END=39239505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr2	39239506	.	T	.	.	PASS	END=39239531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr2	39239532	.	T	.	.	PASS	END=39239537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr2	39239538	.	A	.	.	PASS	END=39239540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr2	39240550	.	G	.	.	PASS	END=39240609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	39240610	.	T	.	.	PASS	END=39240686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	39240687	.	C	.	.	PASS	END=39240752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	39240753	.	T	.	.	PASS	END=39240755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	39240957	.	T	.	.	PASS	END=39241086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	39241087	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:83:99:60
chr2	39241088	.	T	.	.	PASS	END=39241134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr2	39241135	.	C	.	.	PASS	END=39241170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:94:60
chr2	39241171	.	A	.	.	PASS	END=39241181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	39241855	.	C	.	.	PASS	END=39241881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr2	39241882	.	T	.	.	PASS	END=39241897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	39241898	.	G	.	.	PASS	END=39241907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr2	39241908	.	T	.	.	PASS	END=39241918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	39241919	.	G	.	.	PASS	END=39241977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	39241978	.	A	.	.	PASS	END=39242038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	39249636	.	C	.	.	PASS	END=39249641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr2	39249642	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:69:60
chr2	39249643	.	C	.	.	PASS	END=39249648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr2	39249649	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:60:60
chr2	39249650	.	A	.	.	PASS	END=39249690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr2	39249691	.	G	.	.	PASS	END=39249702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	39249703	.	A	.	.	PASS	END=39249715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	39249716	.	T	.	.	PASS	END=39249725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	39249726	.	A	.	.	PASS	END=39249768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	39249769	.	A	.	.	PASS	END=39249795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	39249796	.	G	.	.	PASS	END=39249915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr2	39249916	.	T	.	.	PASS	END=39250189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:271:99:60
chr2	39250190	.	T	.	.	PASS	END=39250216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr2	39250217	.	G	.	.	PASS	END=39250224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr2	39250225	.	T	.	.	PASS	END=39250252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	39250253	.	T	.	.	PASS	END=39250262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	39250263	.	C	.	.	PASS	END=39250314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	39250315	.	T	.	.	PASS	END=39250351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	39250352	.	C	.	.	PASS	END=39250396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr2	39250397	.	A	.	.	PASS	END=39250403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr2	39250404	.	A	.	.	PASS	END=39250412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr2	39250413	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:30:60
chr2	39250414	.	T	.	.	PASS	END=39250417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr2	39251100	.	C	.	.	PASS	END=39251137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	39251138	.	T	.	.	PASS	END=39251192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	39251193	.	A	.	.	PASS	END=39251247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	39251248	.	C	.	.	PASS	END=39251287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	39251288	.	C	.	.	PASS	END=39251317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:92:60
chr2	39251318	.	T	.	.	PASS	END=39251329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	39261929	.	G	.	.	LowGQX	END=39262011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39262012	.	A	.	.	LowGQX	END=39262019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	39262020	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	39262021	.	T	.	.	LowGQX	END=39262028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	39262302	.	A	.	.	PASS	END=39262333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr2	39262334	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:75:60
chr2	39262335	.	A	.	.	PASS	END=39262340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	39262341	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:63:60
chr2	39262342	.	A	.	.	PASS	END=39262369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:80:60
chr2	39262370	.	A	.	.	PASS	END=39262381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	39262382	.	G	.	.	PASS	END=39262424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	39262425	.	A	.	.	PASS	END=39262500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	39262501	.	T	.	.	PASS	END=39262529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	39262530	.	C	.	.	PASS	END=39262566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	39262567	.	A	.	.	PASS	END=39262586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	39262587	.	A	.	.	PASS	END=39262653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	39262654	.	A	.	.	PASS	END=39262692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	39278234	.	T	.	.	PASS	END=39278251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr2	39278252	.	C	.	.	PASS	END=39278264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:72:60
chr2	39278265	.	T	.	.	PASS	END=39278267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	39278268	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:66:60
chr2	39278269	.	T	.	.	PASS	END=39278298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr2	39278299	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:30:60
chr2	39278300	.	A	.	.	PASS	END=39278367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:82:60
chr2	39278368	.	C	.	.	PASS	END=39278401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	39278402	.	T	.	.	PASS	END=39278405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	39278406	.	C	.	.	PASS	END=39278432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr2	39278433	.	T	.	.	PASS	END=39278445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr2	39278446	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:15:60
chr2	39278447	.	A	.	.	PASS	END=39278459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr2	39278460	.	G	.	.	PASS	END=39278461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr2	39278462	.	C	.	.	PASS	END=39278469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr2	39278470	.	T	.	.	PASS	END=39278478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr2	39278479	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr2	39281704	.	T	.	.	PASS	END=39281714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr2	39281715	.	C	.	.	PASS	END=39281721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:60
chr2	39281722	.	T	.	.	PASS	END=39281729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr2	39281730	.	G	C	731.89	SB	DP=20;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=36.59;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,20:20:60.18:765,60,0:60:60:1.000
chr2	39281731	.	A	.	.	PASS	END=39281732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:60:60
chr2	39281733	.	G	.	.	PASS	END=39281735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:78:60
chr2	39281736	.	T	.	.	PASS	END=39281747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr2	39281748	.	T	.	.	PASS	END=39281779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	39281780	.	G	.	.	PASS	END=39281822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	39281823	.	C	.	.	PASS	END=39281889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	39281890	.	G	.	.	PASS	END=39281917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	39281918	.	A	.	.	PASS	END=39281955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	39281956	.	C	.	.	PASS	END=39281970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr2	39281971	.	A	.	.	PASS	END=39281973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr2	39281974	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:24:60
chr2	39281975	.	A	.	.	PASS	END=39281997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	39281998	.	A	.	.	PASS	END=39282011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	39282012	.	G	.	.	PASS	END=39282015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	39283792	.	T	.	.	PASS	END=39283816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr2	39283817	.	A	.	.	PASS	END=39283837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr2	39283838	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:70:60
chr2	39283839	.	C	.	.	PASS	END=39283853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	39283854	.	A	.	.	PASS	END=39283947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	39283948	.	T	.	.	PASS	END=39283995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	39283996	.	A	.	.	PASS	END=39284013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	39284014	.	A	.	.	PASS	END=39284027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr2	39284028	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr2	39284029	.	A	.	.	PASS	END=39284047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr2	39284048	.	T	.	.	PASS	END=39284051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr2	39284052	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:42:60
chr2	39284053	.	A	.	.	PASS	END=39284058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr2	39285763	.	G	.	.	PASS	END=39285786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	39285787	.	G	.	.	PASS	END=39285813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr2	39285814	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:72:60
chr2	39285815	.	T	.	.	PASS	END=39285831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr2	39285832	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:66:60
chr2	39285833	.	T	.	.	PASS	END=39285848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr2	39285849	.	A	.	.	PASS	END=39285903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr2	39285904	.	C	.	.	PASS	END=39285973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	39285974	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:73:69:60
chr2	39285975	.	A	.	.	PASS	END=39285996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	39294718	.	A	.	.	PASS	END=39294737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	39294738	.	T	.	.	PASS	END=39294796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	39294797	.	G	.	.	PASS	END=39294825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	39294826	.	A	.	.	PASS	END=39294873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	39294874	.	A	.	.	PASS	END=39294895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:96:60
chr2	39294896	.	T	.	.	PASS	END=39294935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr2	39294936	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:87:60
chr2	39294937	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:65:60
chr2	39294938	.	A	.	.	PASS	END=39294945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	39347426	.	G	.	.	PASS	END=39347432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr2	39347433	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:34:24:60
chr2	39347434	.	T	.	.	PASS	END=39347460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr2	39347461	.	C	.	.	PASS	END=39347490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:75:60
chr2	39347491	.	G	.	.	PASS	END=39347506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	39347507	.	C	.	.	PASS	END=39347557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:80:60
chr2	39347558	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:72:60
chr2	39347559	.	T	.	.	PASS	END=39347560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	39347561	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:75:60
chr2	39347562	.	A	.	.	PASS	END=39347577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr2	39347578	.	G	.	.	PASS	END=39347596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:69:60
chr2	39347597	.	G	.	.	PASS	END=39347614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr2	39403139	.	A	.	.	LowGQX	END=39403233	GT	./.
chr2	39403234	.	G	.	.	LowGQX	END=39403238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39405687	.	T	.	.	LowGQX	END=39405691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39405692	.	G	.	.	LowGQX	.	GT	./.
chr2	39405693	.	A	.	.	LowGQX	END=39405715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39405716	.	A	.	.	LowGQX	.	GT	./.
chr2	39405717	.	G	.	.	LowGQX	END=39405720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39405721	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	39405722	.	T	.	.	LowGQX	END=39405764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39405765	.	T	.	.	LowGQX	.	GT	./.
chr2	39405766	.	A	.	.	LowGQX	END=39405769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39405770	.	G	.	.	LowGQX	END=39405816	GT	./.
chr2	39405817	.	C	.	.	LowGQX	END=39405854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39405855	.	T	.	.	LowGQX	.	GT	./.
chr2	39405856	.	C	.	.	LowGQX	END=39405860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39405861	.	T	.	.	LowGQX	.	GT	./.
chr2	39405862	.	T	.	.	LowGQX	END=39405900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39406305	.	C	.	.	LowGQX	END=39406464	GT	./.
chr2	39411711	.	T	.	.	LowGQX	END=39411810	GT	./.
chr2	39414760	.	C	.	.	LowGQX	END=39414786	GT	./.
chr2	39414787	.	A	.	.	LowGQX	END=39414859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39417444	.	A	.	.	LowGQX	END=39417634	GT	./.
chr2	39417635	.	C	.	.	LowGQX	END=39417637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39417638	.	C	.	.	LowGQX	.	GT	./.
chr2	39417639	.	T	.	.	LowGQX	END=39417645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39431606	.	T	.	.	LowGQX	END=39431758	GT	./.
chr2	39431759	.	C	.	.	LowGQX	END=39431763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440528	.	A	.	.	LowGQX	END=39440546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440547	.	T	.	.	LowGQX	END=39440548	GT	./.
chr2	39440549	.	T	.	.	LowGQX	END=39440554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440555	.	A	.	.	LowGQX	.	GT	./.
chr2	39440556	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440557	.	A	.	.	LowGQX	END=39440558	GT	./.
chr2	39440559	.	A	.	.	LowGQX	END=39440561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440562	.	A	.	.	LowGQX	.	GT	./.
chr2	39440563	.	A	.	.	LowGQX	END=39440564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440565	.	A	.	.	LowGQX	.	GT	./.
chr2	39440566	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440567	.	C	.	.	LowGQX	.	GT	./.
chr2	39440568	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440569	.	T	.	.	LowGQX	.	GT	./.
chr2	39440570	.	G	.	.	LowGQX	END=39440573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440574	.	T	.	.	LowGQX	.	GT	./.
chr2	39440575	.	G	.	.	LowGQX	END=39440581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440582	.	A	.	.	LowGQX	.	GT	./.
chr2	39440583	.	T	.	.	LowGQX	END=39440589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440590	.	C	.	.	LowGQX	.	GT	./.
chr2	39440591	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440592	.	T	.	.	LowGQX	.	GT	./.
chr2	39440593	.	T	.	.	LowGQX	END=39440598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440599	.	A	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	39440600	.	C	.	.	LowGQX	.	GT	./.
chr2	39440601	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440602	.	C	.	.	LowGQX	.	GT	./.
chr2	39440603	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440604	.	A	.	.	LowGQX	END=39440605	GT	./.
chr2	39440606	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440607	.	A	.	.	LowGQX	.	GT	./.
chr2	39440608	.	G	.	.	LowGQX	END=39440609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440610	.	A	.	.	LowGQX	END=39440611	GT	./.
chr2	39440612	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440613	.	T	.	.	LowGQX	END=39440614	GT	./.
chr2	39440615	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440616	.	G	.	.	LowGQX	END=39440617	GT	./.
chr2	39440618	.	G	.	.	LowGQX	END=39440619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440620	.	G	.	.	LowGQX	.	GT	./.
chr2	39440621	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440622	.	A	.	.	LowGQX	.	GT	./.
chr2	39440623	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39440624	.	A	.	.	LowGQX	END=39440626	GT	./.
chr2	39440627	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39452978	.	A	.	.	LowGQX	END=39453103	GT	./.
chr2	39456504	.	A	.	.	LowGQX	END=39456675	GT	./.
chr2	39477753	.	C	.	.	LowGQX	END=39477844	GT	./.
chr2	39477845	.	C	.	.	LowGQX	END=39477852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39478949	.	T	.	.	LowGQX	END=39479048	GT	./.
chr2	39481577	.	C	.	.	LowGQX	END=39481676	GT	./.
chr2	39485486	.	T	.	.	LowGQX	END=39485636	GT	./.
chr2	39485645	.	T	.	.	LowGQX	END=39485744	GT	./.
chr2	39487725	.	T	.	.	LowGQX	END=39487920	GT	./.
chr2	39492342	.	A	.	.	LowGQX	END=39492501	GT	./.
chr2	39494310	.	C	.	.	LowGQX	END=39494409	GT	./.
chr2	39499422	.	A	.	.	LowGQX	END=39499543	GT	./.
chr2	39499604	.	T	.	.	LowGQX	END=39499644	GT	./.
chr2	39499645	.	G	.	.	LowGQX	END=39499703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39505538	.	A	.	.	LowGQX	END=39505637	GT	./.
chr2	39507406	.	A	.	.	LowGQX	END=39507505	GT	./.
chr2	39509572	.	A	.	.	LowGQX	END=39509724	GT	./.
chr2	39513991	.	A	.	.	LowGQX	END=39514107	GT	./.
chr2	39515260	.	A	.	.	LowGQX	END=39515273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39515274	.	G	.	.	LowGQX	END=39515275	GT	./.
chr2	39515276	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39515277	.	T	.	.	LowGQX	.	GT	./.
chr2	39515278	.	G	.	.	LowGQX	END=39515288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39515289	.	A	.	.	LowGQX	.	GT	./.
chr2	39515290	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39515291	.	C	.	.	LowGQX	.	GT	./.
chr2	39515292	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39515293	.	G	.	.	LowGQX	.	GT	./.
chr2	39515294	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39515295	.	G	.	.	LowGQX	.	GT	./.
chr2	39515296	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39515297	.	G	.	.	LowGQX	.	GT	./.
chr2	39515298	.	G	.	.	LowGQX	END=39515299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39515300	.	G	.	.	LowGQX	END=39515301	GT	./.
chr2	39515302	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39515303	.	G	.	.	LowGQX	END=39515306	GT	./.
chr2	39515307	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39515308	.	A	.	.	LowGQX	END=39515310	GT	./.
chr2	39515311	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39515312	.	G	.	.	LowGQX	.	GT	./.
chr2	39515313	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39515314	.	A	.	.	LowGQX	END=39515315	GT	./.
chr2	39515316	.	C	.	.	LowGQX	END=39515318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39515319	.	G	.	.	LowGQX	.	GT	./.
chr2	39515320	.	G	.	.	LowGQX	END=39515324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39515325	.	G	.	.	LowGQX	.	GT	./.
chr2	39515326	.	C	.	.	LowGQX	END=39515333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39515334	.	G	.	.	LowGQX	END=39515335	GT	./.
chr2	39515336	.	C	.	.	LowGQX	END=39515337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39515338	.	C	.	.	LowGQX	END=39515402	GT	./.
chr2	39515403	.	G	.	.	LowGQX	END=39515405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39515406	.	T	.	.	LowGQX	.	GT	./.
chr2	39515407	.	G	.	.	LowGQX	END=39515413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39515414	.	G	.	.	LowGQX	.	GT	./.
chr2	39515415	.	A	.	.	LowGQX	END=39515420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39515421	.	G	.	.	LowGQX	END=39515422	GT	./.
chr2	39515423	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39517405	.	T	.	.	LowGQX	END=39517504	GT	./.
chr2	39519832	.	C	.	.	LowGQX	END=39519990	GT	./.
chr2	39520289	.	T	.	.	LowGQX	END=39520290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39520291	.	G	.	.	LowGQX	.	GT	./.
chr2	39520292	.	G	.	.	LowGQX	END=39520302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39520303	.	G	.	.	LowGQX	.	GT	./.
chr2	39520304	.	A	.	.	LowGQX	END=39520440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39526864	.	T	.	.	LowGQX	END=39526963	GT	./.
chr2	39535066	.	T	.	.	LowGQX	END=39535165	GT	./.
chr2	39536530	.	A	.	.	LowGQX	END=39536681	GT	./.
chr2	39542441	.	A	.	.	LowGQX	END=39542447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39542448	.	T	.	.	LowGQX	END=39542540	GT	./.
chr2	39552657	.	A	.	.	LowGQX	END=39552771	GT	./.
chr2	39552862	.	A	.	.	LowGQX	END=39552961	GT	./.
chr2	39553022	.	T	.	.	LowGQX	END=39553121	GT	./.
chr2	39553285	.	A	.	.	LowGQX	END=39553420	GT	./.
chr2	39559045	.	A	.	.	LowGQX	END=39559144	GT	./.
chr2	39560635	.	A	.	.	LowGQX	END=39560734	GT	./.
chr2	39564035	.	T	.	.	LowGQX	END=39564188	GT	./.
chr2	39564645	.	T	.	.	LowGQX	END=39564744	GT	./.
chr2	39570512	.	T	.	.	LowGQX	END=39570611	GT	./.
chr2	39583386	.	A	.	.	LowGQX	END=39583537	GT	./.
chr2	39605135	.	A	.	.	LowGQX	END=39605255	GT	./.
chr2	39605256	.	A	.	.	LowGQX	END=39605266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39605267	.	A	.	.	LowGQX	.	GT	./.
chr2	39605268	.	A	.	.	LowGQX	END=39605285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39663971	.	G	.	.	LowGQX	END=39664130	GT	./.
chr2	39893113	.	C	.	.	LowGQX	END=39893521	GT	./.
chr2	39931219	.	A	.	.	LowGQX	END=39931336	GT	./.
chr2	39934187	.	A	.	.	LowGQX	END=39934231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39934232	.	C	.	.	LowGQX	END=39934319	GT	./.
chr2	39934320	.	A	.	.	LowGQX	END=39934328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39944148	.	A	.	.	LowGQX	END=39944393	GT	./.
chr2	39963873	.	T	.	.	LowGQX	END=39963888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39963889	.	A	.	.	LowGQX	END=39963908	GT	./.
chr2	39963909	.	C	.	.	LowGQX	END=39963938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39963939	.	A	.	.	LowGQX	.	GT	./.
chr2	39963940	.	C	.	.	LowGQX	END=39963948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39963949	.	A	.	.	LowGQX	.	GT	./.
chr2	39963950	.	T	.	.	LowGQX	END=39963988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39963989	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	39963990	.	A	.	.	LowGQX	END=39964028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	39964029	.	G	.	.	LowGQX	END=39964045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	39964046	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	39964047	.	T	.	.	LowGQX	END=39964062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	39964063	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	39964064	.	G	.	.	LowGQX	END=39964094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	39964095	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	39964096	.	T	.	.	LowGQX	END=39964124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	39964125	.	T	.	.	LowGQX	END=39964142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	39964143	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr2	39964144	.	G	.	.	LowGQX	END=39964184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39964185	.	C	.	.	LowGQX	.	GT	./.
chr2	39964186	.	C	.	.	LowGQX	END=39964200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39964201	.	T	.	.	LowGQX	.	GT	./.
chr2	39971508	.	A	.	.	LowGQX	END=39971647	GT	./.
chr2	39971648	.	A	.	.	LowGQX	END=39971667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39982373	.	A	.	.	LowGQX	END=39982601	GT	./.
chr2	39983015	.	A	.	.	LowGQX	END=39983114	GT	./.
chr2	39984450	.	C	.	.	LowGQX	END=39984549	GT	./.
chr2	39988465	.	T	.	.	LowGQX	END=39988504	GT	./.
chr2	39988505	.	A	.	.	LowGQX	END=39988508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39988509	.	T	.	.	LowGQX	.	GT	./.
chr2	39988510	.	A	.	.	LowGQX	END=39988511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39988512	.	A	.	.	LowGQX	.	GT	./.
chr2	39988513	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39988514	.	C	.	.	LowGQX	.	GT	./.
chr2	39988515	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39988516	.	C	.	.	LowGQX	.	GT	./.
chr2	39988517	.	A	.	.	LowGQX	END=39988525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39988526	.	G	.	.	LowGQX	.	GT	./.
chr2	39988527	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39988528	.	C	.	.	LowGQX	END=39988529	GT	./.
chr2	39988530	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39988531	.	G	.	.	LowGQX	END=39988532	GT	./.
chr2	39988533	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39988534	.	G	.	.	LowGQX	.	GT	./.
chr2	39988535	.	T	.	.	LowGQX	END=39988536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39988537	.	A	.	.	LowGQX	.	GT	./.
chr2	39988538	.	G	.	.	LowGQX	END=39988539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39988540	.	T	.	.	LowGQX	.	GT	./.
chr2	39988541	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39988542	.	T	.	.	LowGQX	END=39988546	GT	./.
chr2	39988547	.	G	.	.	LowGQX	END=39988548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39988549	.	T	.	.	LowGQX	.	GT	./.
chr2	39988550	.	A	.	.	LowGQX	END=39988551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39988552	.	G	.	.	LowGQX	.	GT	./.
chr2	39988553	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39988554	.	A	.	.	LowGQX	.	GT	./.
chr2	39988555	.	A	.	.	LowGQX	END=39988559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39988560	.	T	.	.	LowGQX	.	GT	./.
chr2	39988561	.	A	.	.	LowGQX	END=39988564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39993115	.	C	.	.	LowGQX	END=39993273	GT	./.
chr2	39995502	.	A	.	.	LowGQX	END=39995652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996040	.	C	.	.	LowGQX	.	GT	./.
chr2	39996041	.	C	.	.	LowGQX	END=39996042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996043	.	T	.	.	LowGQX	.	GT	./.
chr2	39996044	.	T	.	.	LowGQX	END=39996045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996046	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	39996047	.	G	.	.	LowGQX	END=39996056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996057	.	G	.	.	LowGQX	.	GT	./.
chr2	39996058	.	A	.	.	LowGQX	END=39996059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996060	.	T	.	.	LowGQX	.	GT	./.
chr2	39996061	.	T	.	.	LowGQX	END=39996066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996067	.	T	.	.	LowGQX	.	GT	./.
chr2	39996068	.	T	.	.	LowGQX	END=39996086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996087	.	A	.	.	LowGQX	.	GT	./.
chr2	39996088	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996089	.	G	.	.	LowGQX	.	GT	./.
chr2	39996090	.	G	.	.	LowGQX	END=39996094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996095	.	T	.	.	LowGQX	.	GT	./.
chr2	39996096	.	A	.	.	LowGQX	END=39996104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996105	.	G	.	.	LowGQX	.	GT	./.
chr2	39996106	.	A	.	.	LowGQX	END=39996109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996110	.	T	.	.	LowGQX	.	GT	./.
chr2	39996111	.	T	.	.	LowGQX	END=39996134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996135	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	39996136	.	G	.	.	LowGQX	END=39996143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996144	.	A	.	.	LowGQX	.	GT	./.
chr2	39996145	.	A	.	.	LowGQX	END=39996146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996147	.	A	.	.	LowGQX	.	GT	./.
chr2	39996148	.	G	.	.	LowGQX	END=39996158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996159	.	T	.	.	LowGQX	.	GT	./.
chr2	39996160	.	C	.	.	LowGQX	END=39996163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996164	.	C	.	.	LowGQX	.	GT	./.
chr2	39996165	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996166	.	T	.	.	LowGQX	.	GT	./.
chr2	39996167	.	C	.	.	LowGQX	END=39996171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996172	.	C	.	.	LowGQX	.	GT	./.
chr2	39996173	.	A	.	.	LowGQX	END=39996182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996183	.	C	.	.	LowGQX	END=39996184	GT	./.
chr2	39996185	.	T	.	.	LowGQX	END=39996206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996207	.	T	.	.	LowGQX	.	GT	./.
chr2	39996208	.	C	.	.	LowGQX	END=39996220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996221	.	C	.	.	LowGQX	.	GT	./.
chr2	39996222	.	C	.	.	LowGQX	END=39996233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39996848	.	A	.	.	LowGQX	END=39997261	GT	./.
chr2	39998643	.	A	.	.	LowGQX	END=39998734	GT	./.
chr2	39998735	.	A	.	.	LowGQX	END=39998756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39998757	.	A	.	.	LowGQX	.	GT	./.
chr2	39998758	.	A	.	.	LowGQX	END=39998763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39998764	.	C	.	.	LowGQX	.	GT	./.
chr2	39998765	.	C	.	.	LowGQX	END=39998779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39998780	.	C	.	.	LowGQX	.	GT	./.
chr2	39998781	.	C	.	.	LowGQX	END=39998826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39998827	.	A	.	.	LowGQX	.	GT	./.
chr2	39998828	.	A	.	.	LowGQX	END=39998830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	39998831	.	C	.	.	LowGQX	.	GT	./.
chr2	39998832	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	40006252	.	A	.	.	LowGQX	END=40006421	GT	./.
chr2	40342391	.	C	.	.	PASS	END=40342471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	40342472	.	G	.	.	PASS	END=40342542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	40342543	.	C	.	.	PASS	END=40342640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr2	40342641	.	A	.	.	PASS	END=40342743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr2	40342744	.	G	.	.	PASS	END=40342771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	40366539	.	A	.	.	PASS	END=40366565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	40366566	.	G	.	.	PASS	END=40366696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	40366697	.	A	.	.	PASS	END=40366750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	40366751	.	G	.	.	PASS	END=40366818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	40387853	.	T	.	.	PASS	END=40387880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	40387881	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:59:60
chr2	40387882	.	A	.	.	PASS	END=40387911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr2	40387912	.	G	.	.	PASS	END=40387934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	40387935	.	G	.	.	PASS	END=40388006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	40391992	.	A	.	.	PASS	END=40392016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	40392017	.	T	.	.	PASS	END=40392048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	40392049	.	A	.	.	PASS	END=40392124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	40392125	.	C	.	.	PASS	END=40392132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	40397406	.	T	.	.	PASS	END=40397434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	40397435	.	A	.	.	PASS	END=40397448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	40397449	.	C	.	.	PASS	END=40397505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	40401804	.	T	.	.	PASS	END=40401903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	40401924	.	A	.	.	PASS	END=40402010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	40402011	.	T	.	.	PASS	END=40402023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	40402362	.	A	.	.	PASS	END=40402430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	40402431	.	A	.	.	PASS	END=40402461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	40403068	.	A	.	.	LowGQX	END=40403167	GT	./.
chr2	40404891	.	C	.	.	PASS	END=40404928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	40404929	.	C	.	.	PASS	END=40404990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	40404991	.	T	.	.	PASS	END=40404995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	40405471	.	G	.	.	PASS	END=40405482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	40405483	.	G	.	.	PASS	END=40405539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	40405540	.	C	.	.	PASS	END=40405627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	40405628	.	G	.	.	PASS	END=40405684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:90:60
chr2	40564417	.	G	.	.	LowGQX	END=40564484	GT	./.
chr2	40564485	.	A	.	.	LowGQX	END=40564516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	40655611	.	A	.	.	PASS	END=40655640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	40655641	.	C	.	.	PASS	END=40655742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr2	40655743	.	C	.	.	PASS	END=40655780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr2	40655781	.	G	.	.	PASS	END=40655872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr2	40655873	.	A	.	.	PASS	END=40656056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:99:60
chr2	40656057	.	G	.	.	PASS	END=40656227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr2	40656228	.	G	.	.	PASS	END=40656585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr2	40656586	.	C	.	.	PASS	END=40656718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:252:99:60
chr2	40656719	.	T	.	.	PASS	END=40656838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:262:99:60
chr2	40656839	.	C	.	.	PASS	END=40656990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr2	40656991	.	A	.	.	PASS	END=40657256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:245:99:60
chr2	40657257	.	C	.	.	PASS	END=40657336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:288:99:60
chr2	40657337	.	G	.	.	PASS	END=40657406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr2	40657407	.	C	.	.	PASS	END=40657418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	40657419	.	A	.	.	PASS	END=40657422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	42165698	.	C	.	.	LowGQX	END=42165705	GT	./.
chr2	42165706	.	C	.	.	LowGQX	END=42165767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42165768	.	A	.	.	LowGQX	END=42165769	GT	./.
chr2	42165770	.	A	.	.	LowGQX	END=42165779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42165780	.	T	.	.	LowGQX	.	GT	./.
chr2	42165781	.	A	.	.	LowGQX	END=42165785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42165786	.	T	.	.	LowGQX	.	GT	./.
chr2	42165787	.	T	.	.	LowGQX	END=42165793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42165794	.	C	.	.	LowGQX	.	GT	./.
chr2	42165795	.	A	.	.	LowGQX	END=42165797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42174623	.	A	.	.	LowGQX	END=42174722	GT	./.
chr2	42180127	.	C	.	.	LowGQX	END=42180300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42180301	.	T	.	.	LowGQX	END=42180435	GT	./.
chr2	42275328	.	G	.	.	LowGQX	END=42275980	GT	./.
chr2	42280377	.	A	.	.	LowGQX	END=42280389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42280390	.	C	.	.	LowGQX	.	GT	./.
chr2	42280391	.	T	.	.	LowGQX	END=42280397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42280398	.	A	.	.	LowGQX	.	GT	./.
chr2	42280399	.	G	.	.	LowGQX	END=42280400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42280401	.	A	.	.	LowGQX	.	GT	./.
chr2	42280402	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42280403	.	A	.	.	LowGQX	END=42280503	GT	./.
chr2	42281174	.	A	.	.	LowGQX	END=42281449	GT	./.
chr2	42282071	.	T	.	.	LowGQX	END=42282167	GT	./.
chr2	42282168	.	C	.	.	LowGQX	END=42282170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:59
chr2	42282424	.	A	.	.	LowGQX	END=42282431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42282432	.	T	.	.	LowGQX	.	GT	./.
chr2	42282433	.	C	.	.	LowGQX	END=42282535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42284359	.	A	.	.	LowGQX	END=42284508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42284509	.	G	.	.	LowGQX	.	GT	./.
chr2	42284510	.	G	.	.	LowGQX	END=42284535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42284536	.	T	.	.	LowGQX	.	GT	./.
chr2	42284736	.	C	.	.	LowGQX	END=42284835	GT	./.
chr2	42396715	.	C	.	.	LowGQX	END=42396814	GT	./.
chr2	42472623	.	C	.	.	LowGQX	END=42472790	GT	./.
chr2	42472791	.	C	.	.	LowGQX	END=42472798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42472799	.	C	.	.	LowGQX	.	GT	./.
chr2	42472800	.	T	.	.	LowGQX	END=42472801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42472802	.	A	.	.	LowGQX	.	GT	./.
chr2	42472803	.	G	.	.	LowGQX	END=42472804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42472805	.	G	.	.	LowGQX	.	GT	./.
chr2	42472806	.	A	.	.	LowGQX	END=42472810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42472811	.	A	.	.	LowGQX	.	GT	./.
chr2	42472812	.	T	.	.	LowGQX	END=42472814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42472815	.	G	.	.	LowGQX	.	GT	./.
chr2	42472816	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42472817	.	C	.	.	LowGQX	.	GT	./.
chr2	42472818	.	T	.	.	LowGQX	END=42472819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42472820	.	A	.	.	LowGQX	.	GT	./.
chr2	42472821	.	A	.	.	LowGQX	END=42472827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42472828	.	G	.	.	LowGQX	.	GT	./.
chr2	42472829	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42483639	.	A	.	.	LowGQX	END=42483772	GT	./.
chr2	42488259	.	A	.	.	LowGQX	END=42488441	GT	./.
chr2	42490316	.	A	.	.	LowGQX	END=42490319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42490320	.	T	.	.	LowGQX	.	GT	./.
chr2	42490321	.	A	.	.	LowGQX	END=42490322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42490323	.	A	.	.	LowGQX	END=42490324	GT	./.
chr2	42490325	.	C	.	.	LowGQX	END=42490328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42490329	.	C	.	.	LowGQX	.	GT	./.
chr2	42490330	.	A	.	.	LowGQX	END=42490332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42490333	.	A	.	.	LowGQX	.	GT	./.
chr2	42490334	.	C	.	.	LowGQX	END=42490337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42490338	.	C	.	.	LowGQX	.	GT	./.
chr2	42490339	.	T	.	.	LowGQX	END=42490344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42490345	.	G	.	.	LowGQX	.	GT	./.
chr2	42490346	.	T	.	.	LowGQX	END=42490352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42490353	.	A	.	.	LowGQX	END=42490354	GT	./.
chr2	42490355	.	T	.	.	LowGQX	END=42490358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42490359	.	G	.	.	LowGQX	.	GT	./.
chr2	42490360	.	G	.	.	LowGQX	END=42490361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42490362	.	A	.	.	LowGQX	END=42490363	GT	./.
chr2	42490364	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42490365	.	A	.	.	LowGQX	END=42490379	GT	./.
chr2	42490380	.	G	.	.	LowGQX	END=42490485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42491754	.	A	.	.	LowGQX	END=42491908	GT	./.
chr2	42492025	.	T	.	.	LowGQX	END=42492124	GT	./.
chr2	42507988	.	A	.	.	LowGQX	END=42507995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42507996	.	A	.	.	LowGQX	END=42508115	GT	./.
chr2	42509931	.	T	.	.	LowGQX	END=42510094	GT	./.
chr2	42510095	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42510096	.	A	.	.	LowGQX	.	GT	./.
chr2	42510097	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42510098	.	A	.	.	LowGQX	.	GT	./.
chr2	42510099	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42510100	.	A	.	.	LowGQX	.	GT	./.
chr2	42510101	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42510102	.	T	.	.	LowGQX	.	GT	./.
chr2	42510103	.	G	.	.	LowGQX	END=42510105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42510106	.	T	.	.	LowGQX	.	GT	./.
chr2	42510107	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42510108	.	A	.	.	LowGQX	.	GT	./.
chr2	42510109	.	A	.	.	LowGQX	END=42510113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42510114	.	T	.	.	LowGQX	.	GT	./.
chr2	42511759	.	A	.	.	LowGQX	END=42511858	GT	./.
chr2	42513331	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42513332	.	T	.	.	LowGQX	.	GT	./.
chr2	42513333	.	G	.	.	LowGQX	END=42513345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42513346	.	T	.	.	LowGQX	.	GT	./.
chr2	42513347	.	G	.	.	LowGQX	END=42513349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42513350	.	C	.	.	LowGQX	.	GT	./.
chr2	42513351	.	T	.	.	LowGQX	END=42513384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42513385	.	C	.	.	LowGQX	END=42513521	GT	./.
chr2	42515365	.	A	.	.	LowGQX	END=42515464	GT	./.
chr2	42522263	.	A	.	.	LowGQX	END=42522329	GT	./.
chr2	42522330	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522331	.	G	.	.	LowGQX	END=42522333	GT	./.
chr2	42522334	.	A	.	.	LowGQX	END=42522336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522337	.	T	.	.	LowGQX	.	GT	./.
chr2	42522338	.	C	.	.	LowGQX	END=42522340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522341	.	A	.	.	LowGQX	.	GT	./.
chr2	42522342	.	T	.	.	LowGQX	END=42522348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522349	.	T	.	.	LowGQX	.	GT	./.
chr2	42522350	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522351	.	C	.	.	LowGQX	.	GT	./.
chr2	42522352	.	T	.	.	LowGQX	END=42522354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522355	.	A	.	.	LowGQX	.	GT	./.
chr2	42522356	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522357	.	C	.	.	LowGQX	END=42522359	GT	./.
chr2	42522360	.	G	.	.	LowGQX	END=42522362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522363	.	C	.	.	LowGQX	END=42522365	GT	./.
chr2	42522366	.	C	.	.	LowGQX	END=42522368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522369	.	T	.	.	LowGQX	.	GT	./.
chr2	42522370	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522371	.	C	.	.	LowGQX	.	GT	./.
chr2	42522372	.	A	.	.	LowGQX	END=42522376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522377	.	C	.	.	LowGQX	.	GT	./.
chr2	42522378	.	A	.	.	LowGQX	END=42522379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522380	.	G	.	.	LowGQX	.	GT	./.
chr2	42522381	.	A	.	.	LowGQX	END=42522397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522398	.	G	.	.	LowGQX	END=42522401	GT	./.
chr2	42522519	.	A	.	.	LowGQX	END=42522521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522522	.	A	.	.	LowGQX	.	GT	./.
chr2	42522523	.	A	.	.	LowGQX	END=42522526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522527	.	G	.	.	LowGQX	.	GT	./.
chr2	42522528	.	A	.	.	LowGQX	END=42522529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522530	.	A	.	.	LowGQX	.	GT	./.
chr2	42522531	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522532	.	G	.	.	LowGQX	END=42522533	GT	./.
chr2	42522534	.	C	.	.	LowGQX	END=42522546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522547	.	G	.	.	LowGQX	.	GT	./.
chr2	42522548	.	T	.	.	LowGQX	END=42522549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522550	.	T	.	.	LowGQX	.	GT	./.
chr2	42522551	.	T	.	.	LowGQX	END=42522555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522556	.	A	.	.	LowGQX	.	GT	./.
chr2	42522557	.	T	.	.	LowGQX	END=42522566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522567	.	A	.	.	LowGQX	.	GT	./.
chr2	42522568	.	T	.	.	LowGQX	END=42522580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522581	.	A	.	.	LowGQX	.	GT	./.
chr2	42522582	.	C	.	.	LowGQX	END=42522607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42522608	.	A	.	.	LowGQX	END=42522658	GT	./.
chr2	42528349	.	T	.	.	LowGQX	END=42528534	GT	./.
chr2	42530242	.	A	.	.	LowGQX	END=42530371	GT	./.
chr2	42530453	.	A	.	.	LowGQX	END=42530517	GT	./.
chr2	42530518	.	G	.	.	LowGQX	END=42530521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42530522	.	A	.	.	LowGQX	.	GT	./.
chr2	42530523	.	G	.	.	LowGQX	END=42530525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42530526	.	C	.	.	LowGQX	END=42530527	GT	./.
chr2	42530528	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42530529	.	G	.	.	LowGQX	.	GT	./.
chr2	42530530	.	C	.	.	LowGQX	END=42530537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42530538	.	C	.	.	LowGQX	.	GT	./.
chr2	42530539	.	C	.	.	LowGQX	END=42530540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42530541	.	G	.	.	LowGQX	.	GT	./.
chr2	42530542	.	T	.	.	LowGQX	END=42530552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42530553	.	G	.	.	LowGQX	END=42530554	GT	./.
chr2	42530555	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42530556	.	A	.	.	LowGQX	.	GT	./.
chr2	42530557	.	C	.	.	LowGQX	END=42530560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42530561	.	G	.	.	LowGQX	.	GT	./.
chr2	42530562	.	G	.	.	LowGQX	END=42530564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42530565	.	G	.	.	LowGQX	.	GT	./.
chr2	42530566	.	G	.	.	LowGQX	END=42530569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42530570	.	G	.	.	LowGQX	END=42530571	GT	./.
chr2	42530572	.	A	.	.	LowGQX	END=42530575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42530576	.	G	.	.	LowGQX	.	GT	./.
chr2	42530577	.	G	.	.	LowGQX	END=42530581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42530582	.	T	.	.	LowGQX	END=42530584	GT	./.
chr2	42530585	.	A	.	.	LowGQX	END=42530586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42530587	.	G	.	.	LowGQX	END=42530588	GT	./.
chr2	42531608	.	T	.	.	LowGQX	END=42531707	GT	./.
chr2	42543097	.	A	.	.	LowGQX	END=42543196	GT	./.
chr2	42544565	.	A	.	.	LowGQX	END=42544666	GT	./.
chr2	42552322	.	C	.	.	LowGQX	END=42552421	GT	./.
chr2	42552601	.	T	.	.	LowGQX	END=42552700	GT	./.
chr2	42553292	.	A	.	.	LowGQX	END=42553299	GT	./.
chr2	42553300	.	T	.	.	LowGQX	END=42553385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42553386	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	42553387	.	T	.	.	LowGQX	END=42553394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	42556024	.	A	.	.	LowGQX	END=42556158	GT	./.
chr2	42556872	.	A	.	.	LowGQX	END=42557425	GT	./.
chr2	42560914	.	T	.	.	LowGQX	END=42560974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	42560975	.	A	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	42560976	.	G	.	.	LowGQX	END=42561013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42578357	.	A	.	.	LowGQX	END=42578501	GT	./.
chr2	42580315	.	T	.	.	LowGQX	END=42580514	GT	./.
chr2	42588135	.	G	.	.	LowGQX	END=42588194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42588195	.	T	C	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	42588196	.	T	.	.	LowGQX	END=42588247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42588248	.	C	.	.	LowGQX	.	GT	./.
chr2	42588249	.	G	.	.	LowGQX	END=42588303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671072	.	C	.	.	LowGQX	END=42671103	GT	./.
chr2	42671104	.	A	.	.	LowGQX	END=42671108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671109	.	A	.	.	LowGQX	.	GT	./.
chr2	42671110	.	C	.	.	LowGQX	END=42671129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671130	.	G	.	.	LowGQX	END=42671132	GT	./.
chr2	42671133	.	C	.	.	LowGQX	END=42671136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671137	.	A	.	.	LowGQX	.	GT	./.
chr2	42671138	.	T	.	.	LowGQX	END=42671140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671141	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	42671142	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671143	.	C	.	.	LowGQX	.	GT	./.
chr2	42671144	.	T	.	.	LowGQX	END=42671152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671153	.	C	.	.	LowGQX	.	GT	./.
chr2	42671154	.	T	.	.	LowGQX	END=42671164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671165	.	A	.	.	LowGQX	.	GT	./.
chr2	42671166	.	A	.	.	LowGQX	END=42671167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671168	.	G	.	.	LowGQX	.	GT	./.
chr2	42671169	.	T	.	.	LowGQX	END=42671171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671172	.	T	.	.	LowGQX	.	GT	./.
chr2	42671173	.	A	.	.	LowGQX	END=42671175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671176	.	T	.	.	LowGQX	.	GT	./.
chr2	42671177	.	A	.	.	LowGQX	END=42671179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671180	.	G	.	.	LowGQX	END=42671181	GT	./.
chr2	42671182	.	C	.	.	LowGQX	END=42671183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671184	.	A	.	.	LowGQX	.	GT	./.
chr2	42671185	.	T	.	.	LowGQX	END=42671187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671188	.	A	.	.	LowGQX	.	GT	./.
chr2	42671189	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671190	.	C	.	.	LowGQX	.	GT	./.
chr2	42671191	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671192	.	A	.	.	LowGQX	END=42671193	GT	./.
chr2	42671194	.	T	.	.	LowGQX	END=42671201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671202	.	C	.	.	LowGQX	END=42671203	GT	./.
chr2	42671204	.	A	.	.	LowGQX	END=42671215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671216	.	C	.	.	LowGQX	.	GT	./.
chr2	42671217	.	C	.	.	LowGQX	END=42671219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671220	.	G	.	.	LowGQX	END=42671221	GT	./.
chr2	42671222	.	A	.	.	LowGQX	END=42671227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671228	.	C	.	.	LowGQX	END=42671230	GT	./.
chr2	42671231	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671232	.	G	.	.	LowGQX	END=42671233	GT	./.
chr2	42671234	.	A	.	.	LowGQX	END=42671236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671237	.	G	.	.	LowGQX	.	GT	./.
chr2	42671238	.	T	.	.	LowGQX	END=42671239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671240	.	A	.	.	LowGQX	.	GT	./.
chr2	42671241	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671242	.	A	.	.	LowGQX	.	GT	./.
chr2	42671243	.	G	.	.	LowGQX	END=42671245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671246	.	T	.	.	LowGQX	.	GT	./.
chr2	42671247	.	A	.	.	LowGQX	END=42671252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671253	.	C	.	.	LowGQX	END=42671350	GT	./.
chr2	42671351	.	T	.	.	LowGQX	END=42671353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671354	.	A	.	.	LowGQX	.	GT	./.
chr2	42671355	.	G	.	.	LowGQX	END=42671357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671358	.	G	.	.	LowGQX	.	GT	./.
chr2	42671359	.	C	.	.	LowGQX	END=42671360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671361	.	G	.	.	LowGQX	.	GT	./.
chr2	42671362	.	A	.	.	LowGQX	END=42671363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671364	.	A	.	.	LowGQX	.	GT	./.
chr2	42671365	.	A	.	.	LowGQX	END=42671376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671377	.	G	.	.	LowGQX	END=42671378	GT	./.
chr2	42671379	.	T	.	.	LowGQX	END=42671382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671383	.	C	.	.	LowGQX	.	GT	./.
chr2	42671384	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671385	.	T	.	.	LowGQX	.	GT	./.
chr2	42671386	.	G	.	.	LowGQX	END=42671387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671388	.	C	.	.	LowGQX	.	GT	./.
chr2	42671389	.	A	.	.	LowGQX	END=42671392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671393	.	C	.	.	LowGQX	.	GT	./.
chr2	42671394	.	A	.	.	LowGQX	END=42671395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671396	.	A	.	.	LowGQX	END=42671398	GT	./.
chr2	42671399	.	A	.	.	LowGQX	END=42671401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671402	.	A	.	.	LowGQX	.	GT	./.
chr2	42671403	.	C	.	.	LowGQX	END=42671404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671405	.	A	.	.	LowGQX	END=42671407	GT	./.
chr2	42671408	.	A	.	.	LowGQX	END=42671411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671412	.	T	.	.	LowGQX	.	GT	./.
chr2	42671413	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671414	.	A	.	.	LowGQX	END=42671415	GT	./.
chr2	42671416	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671417	.	A	.	.	LowGQX	.	GT	./.
chr2	42671418	.	T	.	.	LowGQX	END=42671423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671424	.	G	.	.	LowGQX	.	GT	./.
chr2	42671425	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671426	.	T	.	.	LowGQX	.	GT	./.
chr2	42671427	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671428	.	G	.	.	LowGQX	.	GT	./.
chr2	42671429	.	C	.	.	LowGQX	END=42671430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671431	.	A	.	.	LowGQX	.	GT	./.
chr2	42671432	.	C	.	.	LowGQX	END=42671434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671435	.	T	.	.	LowGQX	.	GT	./.
chr2	42671436	.	T	.	.	LowGQX	END=42671439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671440	.	A	.	.	LowGQX	.	GT	./.
chr2	42671441	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671442	.	T	.	.	LowGQX	.	GT	./.
chr2	42671443	.	C	.	.	LowGQX	END=42671444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671445	.	A	.	.	LowGQX	.	GT	./.
chr2	42671446	.	A	.	.	LowGQX	END=42671447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671448	.	C	.	.	LowGQX	.	GT	./.
chr2	42671449	.	G	.	.	LowGQX	END=42671451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671452	.	T	.	.	LowGQX	.	GT	./.
chr2	42671453	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671454	.	T	.	.	LowGQX	.	GT	./.
chr2	42671455	.	C	.	.	LowGQX	END=42671462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671463	.	C	.	.	LowGQX	.	GT	./.
chr2	42671464	.	A	.	.	LowGQX	END=42671468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671469	.	A	.	.	LowGQX	.	GT	./.
chr2	42671470	.	G	.	.	LowGQX	END=42671476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671477	.	G	.	.	LowGQX	END=42671480	GT	./.
chr2	42671481	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671482	.	C	.	.	LowGQX	END=42671483	GT	./.
chr2	42671484	.	T	.	.	LowGQX	END=42671485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671486	.	A	.	.	LowGQX	.	GT	./.
chr2	42671487	.	T	.	.	LowGQX	END=42671488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671489	.	A	.	.	LowGQX	.	GT	./.
chr2	42671490	.	C	.	.	LowGQX	END=42671494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671495	.	A	.	.	LowGQX	.	GT	./.
chr2	42671496	.	A	.	.	LowGQX	END=42671501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42671502	.	T	.	.	LowGQX	END=42671721	GT	./.
chr2	42719975	.	A	.	.	LowGQX	END=42720421	GT	./.
chr2	42720422	.	G	.	.	LowGQX	END=42720613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42720614	.	A	.	.	LowGQX	.	GT	./.
chr2	42720615	.	G	.	.	LowGQX	END=42720625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42720626	.	T	.	.	LowGQX	.	GT	./.
chr2	42720627	.	G	.	.	LowGQX	END=42720643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42795790	.	C	.	.	LowGQX	.	GT	./.
chr2	42795791	.	G	.	.	LowGQX	END=42795802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42795803	.	A	.	.	LowGQX	.	GT	./.
chr2	42795804	.	G	.	.	LowGQX	END=42795810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42795811	.	T	.	.	LowGQX	.	GT	./.
chr2	42795812	.	C	.	.	LowGQX	END=42795817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42795818	.	T	.	.	LowGQX	.	GT	./.
chr2	42795819	.	G	.	.	LowGQX	END=42795824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42795825	.	G	.	.	LowGQX	.	GT	./.
chr2	42795826	.	A	.	.	LowGQX	END=42795863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42795864	.	C	.	.	LowGQX	END=42795865	GT	./.
chr2	42795866	.	C	.	.	LowGQX	END=42795870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42795871	.	G	.	.	LowGQX	END=42795949	GT	./.
chr2	42797561	.	C	.	.	LowGQX	END=42797643	GT	./.
chr2	42797644	.	G	.	.	LowGQX	END=42797655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42797656	.	G	.	.	LowGQX	END=42797657	GT	./.
chr2	42797658	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42797659	.	T	.	.	LowGQX	.	GT	./.
chr2	42797660	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42806244	.	T	.	.	LowGQX	END=42806343	GT	./.
chr2	42808854	.	T	.	.	LowGQX	END=42809016	GT	./.
chr2	42836597	.	G	.	.	LowGQX	END=42836724	GT	./.
chr2	42867295	.	T	.	.	LowGQX	END=42867394	GT	./.
chr2	42871266	.	G	.	.	LowGQX	END=42871384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42883339	.	G	.	.	LowGQX	END=42883442	GT	./.
chr2	42886902	.	G	.	.	LowGQX	END=42886924	GT	./.
chr2	42886925	.	G	.	.	LowGQX	END=42886971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	42886972	.	T	.	.	LowGQX	END=42887002	GT	./.
chr2	42909540	.	G	.	.	LowGQX	END=42909729	GT	./.
chr2	42922834	.	A	.	.	LowGQX	END=42922851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42922852	.	C	.	.	LowGQX	.	GT	./.
chr2	42922853	.	T	.	.	LowGQX	END=42922866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42922867	.	G	.	.	LowGQX	.	GT	./.
chr2	42922868	.	T	.	.	LowGQX	END=42922873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42922874	.	T	.	.	LowGQX	END=42922991	GT	./.
chr2	42924835	.	T	.	.	LowGQX	END=42924994	GT	./.
chr2	42931333	.	G	.	.	LowGQX	END=42931458	GT	./.
chr2	42935042	.	G	.	.	LowGQX	END=42935194	GT	./.
chr2	42936013	.	G	.	.	LowGQX	END=42936259	GT	./.
chr2	42946121	.	T	.	.	LowGQX	END=42946220	GT	./.
chr2	42950028	.	G	.	.	LowGQX	END=42950061	GT	./.
chr2	42950062	.	G	.	.	LowGQX	END=42950175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42979321	.	T	.	.	LowGQX	END=42979420	GT	./.
chr2	42980477	.	C	.	.	LowGQX	END=42980500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42980501	.	T	.	.	LowGQX	.	GT	./.
chr2	42980502	.	T	.	.	LowGQX	END=42980503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42980504	.	C	.	.	LowGQX	.	GT	./.
chr2	42980505	.	C	.	.	LowGQX	END=42980525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42980526	.	G	.	.	LowGQX	.	GT	./.
chr2	42980527	.	T	.	.	LowGQX	END=42980576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42990046	.	C	.	.	LowGQX	END=42990055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	42990056	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	42990057	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	42990058	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	42990059	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	42990060	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	42990061	.	G	.	.	LowGQX	END=42990069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	42990070	.	T	.	32.74	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:2.88:60:3
chr2	42990071	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	42990072	.	T	.	.	LowGQX	END=42990080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	42990081	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	42990082	.	A	.	.	LowGQX	END=42990100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42990101	.	G	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	42990102	.	C	.	.	LowGQX	END=42990158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42990159	.	T	.	.	LowGQX	END=42991321	GT	./.
chr2	42994567	.	G	.	.	LowGQX	END=42994666	GT	./.
chr2	42994727	.	G	.	.	LowGQX	END=42994826	GT	./.
chr2	42994985	.	C	.	.	LowGQX	END=42995084	GT	./.
chr2	42996851	.	A	.	.	LowGQX	END=42996854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42996855	.	G	.	.	LowGQX	.	GT	./.
chr2	42996856	.	G	.	.	LowGQX	END=42996868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42996869	.	T	.	.	LowGQX	.	GT	./.
chr2	42996870	.	C	.	.	LowGQX	END=42996879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42996880	.	G	.	.	LowGQX	.	GT	./.
chr2	42996881	.	C	.	.	LowGQX	END=42996890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42996891	.	T	.	.	LowGQX	.	GT	./.
chr2	42996892	.	G	.	.	LowGQX	END=42996946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	42996947	.	T	.	.	LowGQX	END=42997000	GT	./.
chr2	42997255	.	G	.	.	LowGQX	END=42997354	GT	./.
chr2	42997627	.	G	.	.	LowGQX	END=42997726	GT	./.
chr2	43009970	.	T	.	.	LowGQX	END=43010069	GT	./.
chr2	43010452	.	A	.	.	LowGQX	END=43010455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43010456	.	G	.	.	LowGQX	.	GT	./.
chr2	43010457	.	A	.	.	LowGQX	END=43010497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43010498	.	C	.	.	LowGQX	.	GT	./.
chr2	43010499	.	A	.	.	LowGQX	END=43010514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	43010515	.	C	.	.	LowGQX	.	GT	./.
chr2	43010516	.	A	.	.	LowGQX	END=43010562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43010916	.	G	.	.	LowGQX	.	GT	./.
chr2	43010917	.	G	.	.	LowGQX	END=43010929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43010930	.	C	.	.	LowGQX	END=43010931	GT	./.
chr2	43010932	.	G	.	.	LowGQX	END=43010934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43010935	.	G	.	.	LowGQX	.	GT	./.
chr2	43010936	.	A	.	.	LowGQX	END=43010937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43010938	.	T	.	.	LowGQX	.	GT	./.
chr2	43010939	.	G	.	.	LowGQX	END=43010948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43010949	.	C	.	.	LowGQX	END=43010950	GT	./.
chr2	43010951	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43010952	.	T	.	.	LowGQX	.	GT	./.
chr2	43010953	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43010954	.	T	.	.	LowGQX	.	GT	./.
chr2	43010955	.	T	.	.	LowGQX	END=43010957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43010958	.	C	.	.	LowGQX	.	GT	./.
chr2	43010959	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43010960	.	T	.	.	LowGQX	.	GT	./.
chr2	43010961	.	T	.	.	LowGQX	END=43010965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43010966	.	C	.	.	LowGQX	.	GT	./.
chr2	43010967	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43010968	.	G	.	.	LowGQX	.	GT	./.
chr2	43010969	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43010970	.	A	.	.	LowGQX	.	GT	./.
chr2	43010971	.	C	.	.	LowGQX	END=43010973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43010974	.	G	.	.	LowGQX	.	GT	./.
chr2	43010975	.	G	.	.	LowGQX	END=43010990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43010991	.	T	.	.	LowGQX	END=43010993	GT	./.
chr2	43010994	.	A	.	.	LowGQX	END=43010998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43010999	.	G	.	.	LowGQX	END=43011000	GT	./.
chr2	43011001	.	A	.	.	LowGQX	END=43011007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43011008	.	C	.	.	LowGQX	.	GT	./.
chr2	43011009	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43011010	.	G	.	.	LowGQX	.	GT	./.
chr2	43011011	.	T	.	.	LowGQX	END=43011012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43011013	.	G	.	.	LowGQX	.	GT	./.
chr2	43011014	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43011015	.	A	.	.	LowGQX	.	GT	./.
chr2	43015659	.	T	.	.	LowGQX	END=43015758	GT	./.
chr2	43019527	.	A	.	.	LowGQX	END=43019686	GT	./.
chr2	43393799	.	G	.	.	LowGQX	END=43393957	GT	./.
chr2	43451445	.	G	.	.	LowGQX	END=43452022	GT	./.
chr2	43452023	.	G	.	.	LowGQX	END=43452110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43452111	.	G	.	.	LowGQX	.	GT	./.
chr2	43452112	.	C	.	.	LowGQX	END=43452128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43452129	.	C	.	.	LowGQX	.	GT	./.
chr2	43452130	.	C	.	.	LowGQX	END=43452131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43452132	.	G	.	.	LowGQX	.	GT	./.
chr2	43452133	.	G	.	.	LowGQX	END=43452138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43452139	.	A	.	.	LowGQX	.	GT	./.
chr2	43452140	.	T	.	.	LowGQX	END=43452149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43452150	.	A	.	.	LowGQX	.	GT	./.
chr2	43452151	.	C	.	.	LowGQX	END=43452155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43452156	.	A	.	.	LowGQX	.	GT	./.
chr2	43452157	.	G	.	.	LowGQX	END=43452159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43452160	.	C	.	.	LowGQX	.	GT	./.
chr2	43452161	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43452162	.	A	.	.	LowGQX	.	GT	./.
chr2	43452163	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43452164	.	A	.	.	LowGQX	END=43452165	GT	./.
chr2	43452166	.	G	.	.	LowGQX	END=43452172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43452173	.	C	.	.	LowGQX	END=43452213	GT	./.
chr2	43452214	.	G	.	.	LowGQX	END=43452240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43452241	.	A	.	.	LowGQX	.	GT	./.
chr2	43452242	.	C	.	.	LowGQX	END=43452328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43452329	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	43452330	.	A	.	.	LowGQX	END=43452396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	43452397	.	C	.	.	LowGQX	END=43452398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	43452399	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr2	43452400	.	G	.	.	LowGQX	END=43452426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	43452427	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	43452428	.	T	.	.	LowGQX	END=43452443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	43452444	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	43452445	.	G	.	.	LowGQX	END=43452472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	43452473	.	T	.	.	LowGQX	END=43452493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43452494	.	T	.	.	LowGQX	.	GT	./.
chr2	43452495	.	T	.	.	LowGQX	END=43452497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43452498	.	T	.	.	LowGQX	.	GT	./.
chr2	43452499	.	C	.	.	LowGQX	END=43452502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43452503	.	G	.	.	LowGQX	END=43452504	GT	./.
chr2	43452505	.	G	.	.	LowGQX	END=43452544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43452545	.	T	.	.	LowGQX	END=43452821	GT	./.
chr2	43452822	.	C	.	.	LowGQX	END=43452842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43452843	.	T	.	.	LowGQX	.	GT	./.
chr2	43452844	.	C	.	.	LowGQX	END=43452893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43453320	.	G	.	.	LowGQX	END=43453531	GT	./.
chr2	43454842	.	A	.	.	LowGQX	END=43454871	GT	./.
chr2	43454872	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43454873	.	A	.	.	LowGQX	.	GT	./.
chr2	43454874	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43454875	.	T	.	.	LowGQX	.	GT	./.
chr2	43454876	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43454877	.	G	.	.	LowGQX	.	GT	./.
chr2	43454878	.	C	.	.	LowGQX	END=43454881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43454882	.	C	.	.	LowGQX	.	GT	./.
chr2	43454883	.	C	.	.	LowGQX	END=43454895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43454896	.	A	.	.	LowGQX	.	GT	./.
chr2	43454897	.	G	.	.	LowGQX	END=43454903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43454904	.	C	.	.	LowGQX	END=43454905	GT	./.
chr2	43454906	.	G	.	.	LowGQX	END=43454910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43454911	.	A	.	.	LowGQX	.	GT	./.
chr2	43454912	.	T	.	.	LowGQX	END=43454913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43454914	.	C	.	.	LowGQX	.	GT	./.
chr2	43454915	.	G	.	.	LowGQX	END=43454937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43454938	.	T	.	.	LowGQX	.	GT	./.
chr2	43454939	.	T	.	.	LowGQX	END=43455022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43455023	.	C	.	.	LowGQX	END=43455120	GT	./.
chr2	43458086	.	T	.	.	PASS	END=43458102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	43458103	.	G	.	.	PASS	END=43458132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	43458133	.	G	.	.	PASS	END=43458174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr2	43458175	.	T	.	.	PASS	END=43458278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr2	43458279	.	T	.	.	PASS	END=43458326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr2	43458327	.	C	.	.	PASS	END=43458402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr2	43458403	.	T	.	.	PASS	END=43458482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	43459851	.	C	.	.	PASS	END=43459872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	43459873	.	G	.	.	PASS	END=43459922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	43459923	.	G	.	.	PASS	END=43459978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	43459979	.	A	.	.	PASS	END=43460013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	43460014	.	G	.	.	PASS	END=43460021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	43506863	.	C	.	.	PASS	END=43506890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	43506891	.	A	.	.	PASS	END=43506998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	43506999	.	A	.	.	PASS	END=43507015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	43507016	.	A	.	.	PASS	END=43507035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	43514046	.	C	.	.	PASS	END=43514086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	43514087	.	A	.	.	PASS	END=43514127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr2	43514128	.	G	.	.	PASS	END=43514200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr2	43518821	.	A	.	.	PASS	END=43518844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr2	43518845	.	G	.	.	PASS	END=43518893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr2	43518894	.	T	.	.	PASS	END=43518920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr2	43519242	.	C	.	.	PASS	END=43519336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	43519337	.	C	.	.	PASS	END=43519359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	43519360	.	A	.	.	PASS	END=43519361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	43519972	.	C	.	.	PASS	END=43520061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr2	43520062	.	C	.	.	PASS	END=43520157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:60
chr2	43520158	.	A	.	.	PASS	END=43520220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr2	43520221	.	T	.	.	PASS	END=43520258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	43520259	.	C	.	.	PASS	END=43520282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	43520283	.	A	.	.	PASS	END=43520352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	43547582	.	T	.	.	PASS	END=43547653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	43547654	.	C	.	.	PASS	END=43547681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	43571218	.	C	.	.	PASS	END=43571286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	43571287	.	G	.	.	PASS	END=43571337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	43571338	.	G	.	.	PASS	END=43571350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr2	43571351	.	G	.	.	PASS	END=43571376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr2	43625109	.	C	.	.	PASS	END=43625183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:307:99:60
chr2	43625184	.	T	A	3826.03	PASS	BaseQRankSum=2.949;DP=311;Dels=0.00;FS=7.558;HRun=0;HaplotypeScore=20.9275;MQ=60;MQ0=0;MQRankSum=0.060;QD=12.30;ReadPosRankSum=0.034;SB=-1734.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:154,154:311:99:3826,0,3654:60:99:0.500
chr2	43625185	.	T	.	.	PASS	END=43625278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:277:99:60
chr2	43655238	.	C	.	.	PASS	END=43655337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	43655338	.	A	.	.	PASS	END=43655370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr2	43657347	.	C	.	.	PASS	END=43657396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	43657397	.	G	.	.	PASS	END=43657429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	43657430	.	C	.	.	PASS	END=43657446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	43657737	.	G	.	.	PASS	END=43657790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	43657791	.	T	.	.	PASS	END=43657814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr2	43657815	.	A	.	.	PASS	END=43657827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:75:60
chr2	43657828	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:72:60
chr2	43657829	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:36:60
chr2	43657830	.	G	.	.	PASS	END=43657836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	43712369	.	T	.	.	PASS	END=43712435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	43712436	.	C	.	.	PASS	END=43712468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	43725971	.	C	.	.	PASS	END=43725975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr2	43725976	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:54:60
chr2	43725977	.	A	.	.	PASS	END=43726012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr2	43726013	.	C	.	.	PASS	END=43726065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:93:60
chr2	43726066	.	A	.	.	PASS	END=43726088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	43726089	.	A	.	.	PASS	END=43726094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	43732760	.	C	.	.	PASS	END=43732767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	43732768	.	A	.	.	PASS	END=43732777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	43732778	.	G	.	.	PASS	END=43732874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	43735786	.	C	.	.	PASS	END=43735809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	43735810	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:82:48:60
chr2	43735811	.	A	.	.	PASS	END=43735844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	43735845	.	T	.	.	PASS	END=43735901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	43735902	.	A	.	.	PASS	END=43735919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	43755017	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:72:60
chr2	43755018	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:30:60
chr2	43755019	.	T	.	.	PASS	END=43755026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr2	43755027	.	A	.	.	PASS	END=43755050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr2	43755051	.	G	.	.	PASS	END=43755071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	43755072	.	C	.	.	PASS	END=43755127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	43768297	.	C	.	.	PASS	END=43768307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	43768308	.	G	.	.	PASS	END=43768354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	43768355	.	C	.	.	PASS	END=43768440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr2	43768441	.	T	.	.	PASS	END=43768486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	43776348	.	C	.	.	PASS	END=43776368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	43776369	.	T	.	.	PASS	END=43776389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr2	43776390	.	T	.	.	PASS	END=43776506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr2	43776507	.	T	.	.	PASS	END=43776523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr2	43776524	.	A	.	.	PASS	END=43776537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	43778927	.	C	.	.	PASS	END=43778982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	43778983	.	A	.	.	PASS	END=43779033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	43779034	.	A	.	.	PASS	END=43779064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	43779288	.	A	.	.	PASS	END=43779325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr2	43779326	.	G	.	.	PASS	END=43779366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr2	43779367	.	C	.	.	PASS	END=43779384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	43779385	.	C	.	.	PASS	END=43779478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	43783472	.	A	.	.	PASS	END=43783492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	43783493	.	T	.	.	PASS	END=43783614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	43783615	.	G	.	.	PASS	END=43783694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	43787372	.	C	.	.	PASS	END=43787490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	43787491	.	T	.	.	PASS	END=43787510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	43787511	.	T	.	.	PASS	END=43787521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	43787522	.	T	.	.	PASS	END=43787524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	43793534	.	A	.	.	LowGQX	END=43793536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	43793537	.	A	.	.	LowGQX	END=43793549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	43793550	.	A	.	.	LowGQX	END=43793551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	43793552	.	C	.	.	LowGQX	END=43793560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	43793561	.	T	.	.	LowGQX	END=43793562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	43793563	.	G	.	.	LowGQX	END=43793582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	43793583	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	43793584	.	T	.	.	LowGQX	END=43793586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr2	43793587	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	43793588	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr2	43793589	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	43793590	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr2	43793591	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr2	43793592	.	A	.	.	LowGQX	END=43793596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	43793597	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr2	43793598	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	43793599	.	T	.	.	LowGQX	END=43793600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr2	43793601	.	A	.	.	PASS	END=43793602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	43793603	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:0:60
chr2	43793604	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	43793605	.	A	.	.	PASS	END=43793620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	43793621	.	G	.	.	PASS	END=43793626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr2	43793627	.	G	.	.	PASS	END=43793633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	43793634	.	A	.	.	PASS	END=43793646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	43793647	.	A	.	.	PASS	END=43793662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr2	43793663	.	T	.	.	PASS	END=43793664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	43793665	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:54:60
chr2	43793666	.	T	.	.	PASS	END=43793675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	43793676	.	T	.	.	PASS	END=43793696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr2	43793697	.	G	.	.	PASS	END=43793729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr2	43793730	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:60
chr2	43793731	.	T	.	.	PASS	END=43793776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	43793777	.	G	.	.	PASS	END=43793889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr2	43793890	.	A	.	.	PASS	END=43793907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:90:60
chr2	43793908	.	G	.	117.27	PASS	DP=63;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:50:63:87.28:60:87
chr2	43793909	.	A	.	.	PASS	END=43793922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:78:60
chr2	43793923	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:69:60
chr2	43793924	.	C	.	.	PASS	END=43793926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:84:60
chr2	43793927	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:54:60
chr2	43793928	.	A	.	.	PASS	END=43793932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	43793933	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:57:60
chr2	43793934	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:90:60
chr2	43793935	.	C	.	.	PASS	END=43793936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:63:60
chr2	43793937	.	G	.	.	PASS	END=43793940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:96:60
chr2	43793941	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:72:60
chr2	43793942	.	A	.	.	PASS	END=43793944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	43793945	.	T	.	.	PASS	END=43793946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:72:60
chr2	43793947	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:99:60
chr2	43793948	.	A	.	.	PASS	END=43793952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:63:60
chr2	43793953	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:99:60
chr2	43793954	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:75:60
chr2	43793955	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:57:0:60
chr2	43793956	.	A	.	.	PASS	END=43793958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	43793959	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:75:60
chr2	43793960	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:99:60
chr2	43797526	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:51:60
chr2	43797527	.	C	.	.	PASS	END=43797597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr2	43797598	.	T	.	.	PASS	END=43797599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	43797600	.	T	.	.	PASS	END=43797632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr2	43797633	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:46:60
chr2	43797634	.	G	.	.	PASS	END=43797654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr2	43798845	.	C	.	.	PASS	END=43798868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	43798869	.	G	.	.	PASS	END=43798989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	43798990	.	A	.	.	PASS	END=43799001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	43799952	.	C	.	.	PASS	END=43799985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr2	43799986	.	T	.	.	PASS	END=43800083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr2	43800084	.	C	.	.	PASS	END=43800110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr2	43800111	.	A	.	.	PASS	END=43800131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	43801474	.	C	.	.	PASS	END=43801509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	43801510	.	A	.	.	PASS	END=43801603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	43801604	.	A	.	.	PASS	END=43801727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	43801728	.	A	.	.	PASS	END=43801868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	43801869	.	T	.	.	PASS	END=43802000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr2	43802001	.	T	.	.	PASS	END=43802016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr2	43802017	.	A	.	.	PASS	END=43802105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr2	43802106	.	T	.	.	PASS	END=43802152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr2	43802153	.	T	.	.	PASS	END=43802161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	43802162	.	T	.	.	PASS	END=43802166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	43804160	.	C	.	.	PASS	END=43804192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	43804193	.	A	.	.	PASS	END=43804342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	43804343	.	A	.	.	PASS	END=43804352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	43804353	.	T	.	.	PASS	END=43804367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	43804368	.	A	.	.	PASS	END=43804381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	43805649	.	T	.	.	PASS	END=43805729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	43805730	.	A	.	.	PASS	END=43805739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	43805740	.	A	.	.	PASS	END=43805748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	43808859	.	T	.	.	PASS	END=43808883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	43808884	.	G	.	.	PASS	END=43808993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr2	43808994	.	T	.	.	PASS	END=43809024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	43809025	.	A	.	.	PASS	END=43809034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	43809035	.	T	.	.	PASS	END=43809047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	43809048	.	T	.	.	PASS	END=43809067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	43813514	.	C	.	.	PASS	END=43813525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	43813526	.	C	.	.	PASS	END=43813583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	43813584	.	A	.	.	PASS	END=43813613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	43813807	.	A	.	.	PASS	END=43813901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	43813902	.	G	.	.	PASS	END=43813906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	43813992	.	C	.	.	PASS	END=43814090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	43814091	.	A	.	.	PASS	END=43814111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	43814112	.	A	.	.	PASS	END=43814141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	43817962	.	C	.	.	PASS	END=43818093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr2	43819088	.	T	.	.	PASS	END=43819120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr2	43819121	.	A	.	.	PASS	END=43819138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	43819139	.	A	.	.	PASS	END=43819187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	43819444	.	G	.	.	PASS	END=43819479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr2	43819480	.	G	.	.	PASS	END=43819501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	43819502	.	T	.	.	PASS	END=43819543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:96:60
chr2	43871811	.	A	.	.	LowGQX	END=43871937	GT	./.
chr2	43902513	.	C	.	.	LowGQX	END=43903461	GT	./.
chr2	43905984	.	T	.	.	LowGQX	END=43906083	GT	./.
chr2	43906585	.	C	.	.	LowGQX	END=43906746	GT	./.
chr2	43919651	.	A	.	.	LowGQX	END=43919850	GT	./.
chr2	43921508	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr2	43921509	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr2	43921510	.	A	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr2	43921511	.	A	.	.	LowGQX	END=43921512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr2	43921513	.	C	.	.	LowGQX	END=43921518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	43921519	.	C	.	.	LowGQX	END=43921520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr2	43921521	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr2	43921522	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	43921523	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr2	43921524	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr2	43921525	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr2	43921526	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	43921527	.	T	.	.	LowGQX	END=43921543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	43921544	.	T	.	.	LowGQX	END=43921633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	43921634	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	43921635	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	43921636	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	43921637	.	C	.	.	LowGQX	END=43921651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43921652	.	A	.	.	LowGQX	END=43921661	GT	./.
chr2	43922273	.	T	.	.	LowGQX	END=43922372	GT	./.
chr2	43924308	.	A	.	.	LowGQX	END=43924495	GT	./.
chr2	43924496	.	G	.	.	LowGQX	END=43924497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43926784	.	A	.	.	LowGQX	END=43926813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	43926814	.	T	.	.	LowGQX	END=43927187	GT	./.
chr2	43927188	.	A	.	.	LowGQX	END=43927402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43927403	.	C	.	.	LowGQX	END=43927573	GT	./.
chr2	43927574	.	G	.	.	LowGQX	END=43927749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43931108	.	C	.	.	LowGQX	END=43931207	GT	./.
chr2	43933399	.	A	.	.	LowGQX	END=43933558	GT	./.
chr2	43934538	.	A	.	.	LowGQX	END=43934686	GT	./.
chr2	43937127	.	A	.	.	LowGQX	END=43937267	GT	./.
chr2	43937357	.	A	.	.	LowGQX	END=43937471	GT	./.
chr2	43937606	.	T	.	.	LowGQX	END=43937804	GT	./.
chr2	43939341	.	A	.	.	LowGQX	END=43939551	GT	./.
chr2	43947746	.	G	.	.	LowGQX	END=43947898	GT	./.
chr2	43953409	.	A	.	.	LowGQX	END=43953608	GT	./.
chr2	43956774	.	A	.	.	LowGQX	END=43956886	GT	./.
chr2	43958577	.	C	.	.	LowGQX	END=43958743	GT	./.
chr2	43965478	.	A	.	.	LowGQX	END=43965661	GT	./.
chr2	43968083	.	A	.	.	LowGQX	END=43968104	GT	./.
chr2	43968105	.	C	.	.	LowGQX	END=43968149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43968150	.	C	.	.	LowGQX	.	GT	./.
chr2	43968151	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43968152	.	G	.	.	LowGQX	.	GT	./.
chr2	43968153	.	G	.	.	LowGQX	END=43968154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43968155	.	T	.	.	LowGQX	.	GT	./.
chr2	43968156	.	T	.	.	LowGQX	END=43968160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43968161	.	T	.	.	LowGQX	.	GT	./.
chr2	43968162	.	A	.	.	LowGQX	END=43968172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43968173	.	C	.	.	LowGQX	.	GT	./.
chr2	43968174	.	A	.	.	LowGQX	END=43968175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43968176	.	A	.	.	LowGQX	.	GT	./.
chr2	43968177	.	T	.	.	LowGQX	END=43968185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43968186	.	T	.	.	LowGQX	.	GT	./.
chr2	43968187	.	G	.	.	LowGQX	END=43968188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43968189	.	A	.	.	LowGQX	.	GT	./.
chr2	43968190	.	G	.	.	LowGQX	END=43968193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43968194	.	A	.	.	LowGQX	.	GT	./.
chr2	43968195	.	C	.	.	LowGQX	END=43968198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43969878	.	A	.	.	LowGQX	END=43970059	GT	./.
chr2	43970971	.	A	.	.	LowGQX	END=43971130	GT	./.
chr2	43973003	.	A	.	.	LowGQX	END=43973104	GT	./.
chr2	43980756	.	A	.	.	LowGQX	END=43980882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43980883	.	C	.	.	LowGQX	.	GT	./.
chr2	43980884	.	A	.	.	LowGQX	END=43980911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43980912	.	T	.	.	LowGQX	END=43980935	GT	./.
chr2	43984256	.	A	.	.	LowGQX	END=43984383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	43984384	.	T	.	.	LowGQX	END=43984405	GT	./.
chr2	43986037	.	A	.	.	LowGQX	END=43986170	GT	./.
chr2	43989437	.	T	.	.	LowGQX	END=43989536	GT	./.
chr2	43991365	.	A	.	.	LowGQX	END=43991543	GT	./.
chr2	43992550	.	A	.	.	LowGQX	END=43992739	GT	./.
chr2	44001232	.	T	.	.	LowGQX	END=44001331	GT	./.
chr2	44002787	.	T	.	.	LowGQX	END=44002937	GT	./.
chr2	44003919	.	A	.	.	LowGQX	END=44004040	GT	./.
chr2	44008736	.	T	.	.	LowGQX	END=44008903	GT	./.
chr2	44010567	.	A	.	.	LowGQX	END=44010623	GT	./.
chr2	44010624	.	C	.	.	LowGQX	END=44010726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44014305	.	G	.	.	LowGQX	END=44014404	GT	./.
chr2	44016767	.	T	.	.	LowGQX	END=44016866	GT	./.
chr2	44019814	.	G	.	.	LowGQX	END=44019929	GT	./.
chr2	44021594	.	A	.	.	LowGQX	END=44021881	GT	./.
chr2	44022955	.	G	.	.	LowGQX	END=44023104	GT	./.
chr2	44023105	.	C	.	.	LowGQX	END=44023112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44023846	.	T	.	.	LowGQX	END=44023894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44023895	.	A	.	.	LowGQX	END=44023945	GT	./.
chr2	44027969	.	T	.	.	LowGQX	END=44028068	GT	./.
chr2	44028764	.	T	.	.	LowGQX	END=44028828	GT	./.
chr2	44028829	.	G	.	.	LowGQX	END=44028830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44028831	.	A	.	.	LowGQX	.	GT	./.
chr2	44028832	.	T	.	.	LowGQX	END=44028863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44031779	.	A	.	.	LowGQX	END=44031828	GT	./.
chr2	44031829	.	C	.	.	LowGQX	END=44031880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44032291	.	A	.	.	LowGQX	END=44032397	GT	./.
chr2	44036772	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	44036773	.	G	.	.	LowGQX	.	GT	./.
chr2	44036774	.	G	.	.	LowGQX	END=44036783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	44036784	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	44036785	.	G	.	.	LowGQX	END=44036806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	44036807	.	T	.	.	LowGQX	.	GT	./.
chr2	44036808	.	T	.	.	LowGQX	END=44036813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	44036814	.	T	.	.	LowGQX	.	GT	./.
chr2	44036815	.	T	.	.	LowGQX	END=44036821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	44036822	.	G	.	.	LowGQX	.	GT	./.
chr2	44036823	.	T	.	.	LowGQX	END=44036843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	44036844	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	44036845	.	A	.	.	LowGQX	END=44036855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	44036856	.	T	.	.	LowGQX	END=44036925	GT	./.
chr2	44040204	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:51:60
chr2	44040205	.	G	.	.	PASS	END=44040226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr2	44040227	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:72:60
chr2	44040228	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:54:60
chr2	44040229	.	T	.	.	PASS	END=44040247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr2	44040248	.	G	.	.	PASS	END=44040261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	44040262	.	C	.	.	PASS	END=44040274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	44040275	.	C	.	.	PASS	END=44040317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	44040318	.	A	.	.	PASS	END=44040413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	44040414	.	C	.	.	PASS	END=44040422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	44040423	.	A	.	.	PASS	END=44040455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr2	44040456	.	G	.	.	PASS	END=44040490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr2	44040491	.	A	.	.	PASS	END=44040499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr2	44041565	.	T	.	.	PASS	END=44041575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	44041576	.	A	.	.	PASS	END=44041602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	44041603	.	A	.	.	PASS	END=44041630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	44041631	.	G	.	.	PASS	END=44041772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	44041773	.	A	.	.	PASS	END=44041779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	44047003	.	C	.	.	PASS	END=44047233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr2	44047234	.	A	.	.	PASS	END=44047277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	44047278	.	C	.	.	PASS	END=44047290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	44049885	.	C	.	.	PASS	END=44049902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	44049903	.	G	.	.	PASS	END=44049908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	44049909	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:80:58:60
chr2	44049910	.	C	.	.	PASS	END=44049939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	44049940	.	A	.	.	PASS	END=44050002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	44050003	.	C	.	.	PASS	END=44050042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	44050043	.	C	.	.	PASS	END=44050050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	44050051	.	C	.	.	PASS	END=44050052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:66:60
chr2	44050053	.	C	.	.	PASS	END=44050069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr2	44050070	.	G	.	.	PASS	END=44050074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr2	44050075	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:45:60
chr2	44050076	.	T	.	.	PASS	END=44050092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr2	44050093	.	T	.	.	PASS	END=44050095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:60:60
chr2	44050096	.	C	.	.	PASS	END=44050104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr2	44050105	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:39:60
chr2	44050106	.	A	.	.	PASS	END=44050125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr2	44051001	.	A	.	.	LowGQX	END=44051018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	44051019	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	44051020	.	A	.	.	LowGQX	END=44051021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr2	44051022	.	G	.	.	PASS	END=44051024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	44051025	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	44051026	.	T	.	.	PASS	END=44051028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	44051029	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	44051030	.	C	.	.	PASS	END=44051035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	44051036	.	G	.	.	PASS	END=44051038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	44051039	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:9:60
chr2	44051040	.	G	.	.	PASS	END=44051044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	44051045	.	C	.	.	PASS	END=44051047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	44051048	.	T	.	.	PASS	END=44051052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr2	44051053	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:21:60
chr2	44051054	.	A	.	.	PASS	END=44051055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:66:60
chr2	44051056	.	A	.	.	PASS	END=44051064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr2	44051065	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:54:60
chr2	44051066	.	T	.	.	PASS	END=44051074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr2	44051075	.	C	.	.	PASS	END=44051111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	44051112	.	G	.	.	PASS	END=44051121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	44051122	.	G	.	.	PASS	END=44051149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	44051150	.	C	.	.	PASS	END=44051271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	44051272	.	C	.	.	PASS	END=44051315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	44051316	.	A	.	.	PASS	END=44051353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	44051354	.	T	.	.	PASS	END=44051374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	44051375	.	T	.	.	PASS	END=44051433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr2	44051434	.	G	.	.	PASS	END=44051524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr2	44051525	.	T	.	.	PASS	END=44051564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr2	44051565	.	A	.	.	PASS	END=44051622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr2	44051977	.	T	.	.	PASS	END=44052034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	44052035	.	G	.	.	PASS	END=44052053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	44052054	.	T	.	.	PASS	END=44052144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	44052145	.	T	.	.	PASS	END=44052185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	44052186	.	G	.	.	PASS	END=44052204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	44052205	.	T	.	.	PASS	END=44052208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	44053470	.	T	.	.	PASS	END=44053480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr2	44053481	.	A	.	.	PASS	END=44053485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	44053486	.	C	.	.	PASS	END=44053528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	44053529	.	G	.	.	PASS	END=44053546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	44053547	.	G	.	.	PASS	END=44053636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	44053637	.	T	.	.	PASS	END=44053670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	44053671	.	A	.	.	PASS	END=44053691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	44053692	.	T	.	.	PASS	END=44053702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	44053703	.	C	.	.	PASS	END=44053710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr2	44053711	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:90:60
chr2	44055071	.	A	.	.	PASS	END=44055079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	44055080	.	A	.	.	PASS	END=44055083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr2	44055084	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:48:60
chr2	44055085	.	C	.	.	PASS	END=44055095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr2	44055096	.	T	.	.	PASS	END=44055114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:90:60
chr2	44055115	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:52:60
chr2	44055116	.	A	.	.	PASS	END=44055147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	44055148	.	A	.	.	PASS	END=44055222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	44055223	.	C	.	.	PASS	END=44055246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	44055247	.	G	.	.	PASS	END=44055254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	44055255	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:54:60
chr2	44055256	.	T	.	.	PASS	END=44055266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:90:60
chr2	44055267	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:60:60
chr2	44055268	.	A	.	.	PASS	END=44055273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr2	44055274	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:51:60
chr2	44055275	.	A	.	.	PASS	END=44055281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr2	44055282	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:57:60
chr2	44055283	.	T	.	.	PASS	END=44055297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr2	44055298	.	C	.	.	PASS	END=44055305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr2	44055510	.	C	.	.	LowGQX	END=44055526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	44055527	.	T	C	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:33,0,30:60:5:0.500
chr2	44055528	.	A	.	.	LowGQX	END=44055559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44055560	.	A	.	.	LowGQX	END=44055666	GT	./.
chr2	44058857	.	G	.	.	PASS	END=44058878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	44058879	.	G	.	.	PASS	END=44058910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	44058911	.	C	.	.	PASS	END=44058956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	44058957	.	G	.	.	PASS	END=44059032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	44059033	.	G	.	.	PASS	END=44059068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr2	44059069	.	G	.	.	PASS	END=44059087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:60
chr2	44059088	.	G	.	.	PASS	END=44059251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:284:99:60
chr2	44059252	.	G	.	.	PASS	END=44059273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr2	44064922	.	G	.	.	PASS	END=44064935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr2	44064936	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:18:60
chr2	44064937	.	C	.	.	PASS	END=44064964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr2	44064965	.	A	.	.	PASS	END=44064967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr2	44064968	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:45:60
chr2	44064969	.	T	.	.	PASS	END=44064971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr2	44064972	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:57:60
chr2	44064973	.	C	.	.	PASS	END=44064981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr2	44064982	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:63:60
chr2	44064983	.	T	.	.	PASS	END=44064999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	44065000	.	G	.	.	PASS	END=44065025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	44065026	.	T	.	.	PASS	END=44065108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	44065109	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:82:76:60
chr2	44065110	.	C	.	.	PASS	END=44065130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:88:60
chr2	44065131	.	G	.	.	PASS	END=44065145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	44065625	.	G	.	.	PASS	END=44065646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	44065647	.	G	.	.	PASS	END=44065689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr2	44065690	.	G	.	.	PASS	END=44065787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr2	44065788	.	C	.	.	PASS	END=44065822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr2	44065823	.	A	.	.	PASS	END=44065853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	44065854	.	T	.	.	PASS	END=44065869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	44066142	.	G	.	.	PASS	END=44066165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr2	44066166	.	G	.	.	PASS	END=44066173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	44066174	.	T	G	895.70	PASS	BaseQRankSum=0.793;DP=60;Dels=0.00;FS=2.411;HRun=3;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=-0.867;QD=14.93;ReadPosRankSum=-0.274;SB=-388.13	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,32:60:99:926,0,714:60:99:0.533
chr2	44066175	.	C	.	.	PASS	END=44066199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	44066200	.	G	.	.	PASS	END=44066225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	44066226	.	C	.	.	PASS	END=44066291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	44066292	.	G	.	.	PASS	END=44066306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	44071595	.	A	.	.	PASS	END=44071624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	44071625	.	C	A	952.15	PASS	BaseQRankSum=2.404;DP=86;Dels=0.00;FS=1.813;HRun=1;HaplotypeScore=4.7868;MQ=60;MQ0=0;MQRankSum=-0.476;QD=11.07;ReadPosRankSum=0.182;SB=-593.76	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:45,41:86:99:982,0,1047:60:99:0.477
chr2	44071626	.	A	.	.	PASS	END=44071638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	44071639	.	C	T	1052.21	PASS	BaseQRankSum=2.600;DP=97;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=8.5745;MQ=60;MQ0=0;MQRankSum=-0.950;QD=10.85;ReadPosRankSum=0.114;SB=-690.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:50,46:97:99:1082,0,1195:60:99:0.479
chr2	44071640	.	C	.	.	PASS	END=44071719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	44071720	.	C	.	.	PASS	END=44071742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	44071743	.	A	G	727.59	PASS	BaseQRankSum=-0.245;DP=74;Dels=0.00;FS=0.935;HRun=0;HaplotypeScore=12.4131;MQ=60;MQ0=0;MQRankSum=0.060;QD=9.83;ReadPosRankSum=-0.093;SB=-359.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,32:74:99:758,0,926:60:99:0.432
chr2	44071744	.	C	.	.	PASS	END=44071780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	44071781	.	C	.	.	PASS	END=44071798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	44073243	.	G	.	.	PASS	END=44073252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr2	44073253	.	C	.	.	PASS	END=44073264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr2	44073265	.	C	.	.	PASS	END=44073285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr2	44073286	.	C	.	.	PASS	END=44073293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	44073294	.	G	.	.	PASS	END=44073337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	44073338	.	G	.	.	PASS	END=44073443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	44073444	.	A	.	.	PASS	END=44073480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	44073481	.	T	.	.	PASS	END=44073501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	44078672	.	C	.	.	PASS	END=44078692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	44078693	.	C	.	.	PASS	END=44078733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	44078734	.	G	.	.	PASS	END=44078753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	44078754	.	C	.	.	PASS	END=44078832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr2	44078833	.	A	.	.	PASS	END=44078909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr2	44078910	.	T	.	.	PASS	END=44078936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	44078937	.	C	.	.	PASS	END=44078958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	44078959	.	A	.	.	PASS	END=44078992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	44078993	.	G	.	.	PASS	END=44079003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	44079004	.	T	C	2518.03	PASS	DP=73;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=9.4692;MQ=60;MQ0=0;QD=34.49;SB=-75.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,73:73:99:2551,199,0:60:99:1.000
chr2	44079005	.	A	.	.	PASS	END=44079012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	44079442	.	A	.	.	PASS	END=44079477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	44079478	.	C	.	.	PASS	END=44079561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	44079562	.	C	.	.	PASS	END=44079586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	44079587	.	G	.	.	PASS	END=44079606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	44079607	.	C	.	.	PASS	END=44079654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:78:60
chr2	44079655	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:74:60
chr2	44079656	.	G	.	.	PASS	END=44079668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr2	44079669	.	T	.	.	PASS	END=44079676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr2	44079687	.	G	.	.	PASS	END=44079748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr2	44079749	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:72:60
chr2	44079750	.	T	.	.	PASS	END=44079778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr2	44079779	.	T	.	.	PASS	END=44079806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	44079807	.	T	.	.	PASS	END=44079940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	44079941	.	A	.	.	PASS	END=44079957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	44079958	.	A	.	.	PASS	END=44079973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr2	44079974	.	T	.	.	PASS	END=44080001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr2	44080002	.	T	.	.	PASS	END=44080008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr2	44080009	.	T	.	.	PASS	END=44080012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr2	44080013	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:45:60
chr2	44080014	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:63:60
chr2	44080015	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:24:60
chr2	44080016	.	C	.	.	PASS	END=44080034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr2	44080035	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:21:60
chr2	44080036	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:9:60
chr2	44080037	.	C	.	.	PASS	END=44080045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	44080046	.	A	.	.	PASS	END=44080058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	44099064	.	A	.	.	PASS	END=44099087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	44099088	.	C	.	.	PASS	END=44099120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	44099121	.	T	.	.	PASS	END=44099146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	44099147	.	G	.	.	PASS	END=44099178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	44099179	.	G	.	.	PASS	END=44099317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	44099318	.	A	.	.	PASS	END=44099454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	44099455	.	T	.	.	PASS	END=44099492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:92:60
chr2	44099493	.	T	.	.	PASS	END=44099496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	44100875	.	C	.	.	PASS	END=44100881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	44100882	.	G	.	.	PASS	END=44100899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr2	44100900	.	A	.	.	PASS	END=44100901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	44100902	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:21:60
chr2	44100903	.	A	.	.	PASS	END=44100910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr2	44100911	.	C	.	.	PASS	END=44100913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr2	44100914	.	T	.	.	PASS	END=44100938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	44100939	.	A	.	.	PASS	END=44100945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr2	44100946	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:69:60
chr2	44100947	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:30:60
chr2	44100948	.	C	.	.	PASS	END=44100951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr2	44100952	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:31:60
chr2	44100953	.	C	.	.	PASS	END=44100961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr2	44100962	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:87:60
chr2	44100963	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:51:60
chr2	44100964	.	T	.	.	PASS	END=44100967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr2	44100968	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:44:15:60
chr2	44100969	.	A	.	.	PASS	END=44100984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr2	44100985	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:67:60
chr2	44100986	.	C	.	.	PASS	END=44101042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:88:60
chr2	44101043	.	C	.	.	PASS	END=44101064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	44101065	.	C	.	.	PASS	END=44101114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	44101115	.	C	.	.	PASS	END=44101145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	44101146	.	T	.	.	PASS	END=44101176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr2	44101495	.	T	.	.	PASS	END=44101537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	44101538	.	C	T	2299.75	PASS	DP=77;Dels=0.00;FS=0.000;HRun=5;HaplotypeScore=1.9970;MQ=60;MQ0=0;QD=29.87;SB=-1287.84	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,77:77:99:2333,172,0:60:99:1.000
chr2	44101539	.	T	.	.	PASS	END=44101600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	44101601	.	T	.	.	PASS	END=44101615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	44101616	.	T	.	.	PASS	END=44101623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr2	44101624	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:72:60
chr2	44101625	.	G	.	.	PASS	END=44101636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr2	44101637	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:66:60
chr2	44101638	.	T	.	.	PASS	END=44101642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:74:60
chr2	44101643	.	G	.	.	PASS	END=44101647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr2	44101648	.	T	.	.	PASS	END=44101649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr2	44101649	.	G	GC	959.11	PASS	DP=35;FS=0.000;HRun=6;HaplotypeScore=122.9747;MQ=60;MQ0=0;QD=27.40;SB=-213.17	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:3,28:35:92.33:1001,92,0:60:92:0.903
chr2	44101650	.	C	.	.	PASS	END=44101666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr2	44101667	.	T	.	.	PASS	END=44101673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	44102234	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:54:60
chr2	44102235	.	T	C	275.51	SB	BaseQRankSum=1.288;DP=18;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=-0.844;QD=15.31;ReadPosRankSum=1.821;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:8,10:18:99:306,0,180:60:99:0.556
chr2	44102236	.	G	.	.	PASS	END=44102247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	44102248	.	G	.	.	PASS	END=44102251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr2	44102252	.	G	.	.	PASS	END=44102259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr2	44102260	.	T	.	.	PASS	END=44102273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr2	44102274	.	G	.	.	PASS	END=44102287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr2	44102288	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr2	44102289	.	T	.	.	PASS	END=44102299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	44102300	.	C	.	.	PASS	END=44102309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	44102310	.	G	.	.	PASS	END=44102330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	44102331	.	G	.	.	PASS	END=44102350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	44102351	.	G	.	.	PASS	END=44102370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	44102371	.	C	.	.	PASS	END=44102442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	44102443	.	C	T	2168.46	PASS	BaseQRankSum=2.282;DP=200;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=22.0377;MQ=60;MQ0=0;MQRankSum=-0.345;QD=10.84;ReadPosRankSum=1.074;SB=-1348.59	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:101,97:200:99:2198,0,2131:60:99:0.490
chr2	44102444	.	G	.	.	PASS	END=44102470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr2	44102471	.	G	.	.	PASS	END=44102497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	44102498	.	A	.	.	PASS	END=44102512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	44102513	.	G	.	.	PASS	END=44102550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	44102551	.	A	.	.	PASS	END=44102560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	44102561	.	T	.	.	PASS	END=44102572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr2	44102573	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr2	44102574	.	T	.	.	PASS	END=44102581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr2	44102582	.	C	.	.	PASS	END=44102592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr2	44102593	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:21:60
chr2	44102594	.	T	.	.	PASS	END=44102603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	44104649	.	A	.	.	PASS	END=44104665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	44104666	.	G	.	.	PASS	END=44104687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	44104688	.	G	.	.	PASS	END=44104737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	44104738	.	T	.	.	PASS	END=44104924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	44104925	.	T	C	4127.11	PASS	DP=129;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=7.5754;MQ=60;MQ0=0;QD=31.99;SB=-1160.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,128:129:99:4127,319,0:60:99:1.000
chr2	44104926	.	C	.	.	PASS	END=44104995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	44104996	.	G	.	.	PASS	END=44105009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	44105010	.	G	.	.	PASS	END=44105087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	44105088	.	G	.	.	PASS	END=44105103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	44115688	.	T	.	.	PASS	END=44115705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	44115706	.	A	.	.	PASS	END=44115779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	44115780	.	A	.	.	PASS	END=44115846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:91:60
chr2	44116822	.	T	.	.	PASS	END=44116835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:94:60
chr2	44116836	.	C	T	838.21	PASS	BaseQRankSum=1.529;DP=66;Dels=0.00;FS=1.249;HRun=0;HaplotypeScore=8.5941;MQ=60;MQ0=0;MQRankSum=1.940;QD=12.70;ReadPosRankSum=0.797;SB=-225.48	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:31,35:66:99:868,0,841:60:99:0.530
chr2	44116837	.	A	.	.	PASS	END=44116904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	44116905	.	C	.	.	PASS	END=44117002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	44117003	.	T	.	.	PASS	END=44117058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	44117059	.	C	.	.	PASS	END=44117066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	44117450	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44117451	.	T	.	.	LowGQX	.	GT	./.
chr2	44117452	.	A	.	.	LowGQX	END=44117456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44117457	.	A	.	.	LowGQX	.	GT	./.
chr2	44117458	.	A	.	.	LowGQX	END=44117462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44117463	.	A	.	.	LowGQX	.	GT	./.
chr2	44117464	.	A	.	.	LowGQX	END=44117465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44117466	.	A	.	.	LowGQX	END=44117467	GT	./.
chr2	44117468	.	C	.	.	LowGQX	END=44117493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44117494	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	44117495	.	C	.	.	LowGQX	END=44117549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	44121633	.	A	.	.	PASS	END=44121687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	44121688	.	G	.	.	PASS	END=44121765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	44121766	.	T	.	.	PASS	END=44121819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	44123722	.	G	.	.	PASS	END=44123727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	44123728	.	G	.	.	PASS	END=44123741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	44123742	.	C	.	.	PASS	END=44123758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	44123759	.	G	A	1007.87	PASS	BaseQRankSum=1.671;DP=70;Dels=0.00;FS=1.028;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-1.718;QD=14.40;ReadPosRankSum=0.871;SB=-367.53	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,37:70:99:1038,0,824:60:99:0.529
chr2	44123760	.	T	.	.	PASS	END=44123791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	44123792	.	T	.	.	PASS	END=44123880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	44123881	.	T	.	.	PASS	END=44123898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	44126307	.	T	.	.	PASS	END=44126315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	44126316	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:15:60
chr2	44126317	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:54:60
chr2	44126318	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:60
chr2	44126319	.	G	.	.	PASS	END=44126323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr2	44126324	.	G	.	.	PASS	END=44126331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr2	44126332	.	C	.	.	PASS	END=44126349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	44126350	.	G	.	.	PASS	END=44126368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	44126369	.	C	.	.	PASS	END=44126381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	44126382	.	C	.	.	PASS	END=44126499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	44126500	.	C	.	.	PASS	END=44126524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	44126554	.	A	.	.	PASS	END=44126594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	44126595	.	A	.	.	PASS	END=44126710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	44126711	.	T	.	.	PASS	END=44126745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	44126746	.	T	.	.	PASS	END=44126779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	44126780	.	T	.	.	PASS	END=44126795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:96:60
chr2	44128408	.	A	.	.	PASS	END=44128415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr2	44128416	.	T	.	.	PASS	END=44128430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	44128431	.	A	.	.	PASS	END=44128449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	44128450	.	A	.	.	PASS	END=44128478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	44128479	.	A	.	.	PASS	END=44128587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	44128588	.	T	.	.	PASS	END=44128607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	44128608	.	T	.	.	PASS	END=44128620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	44128621	.	G	.	.	PASS	END=44128647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr2	44128648	.	A	.	.	PASS	END=44128662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr2	44128663	.	T	.	.	PASS	END=44128674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr2	44128675	.	G	.	.	PASS	END=44128685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr2	44128686	.	G	.	.	PASS	END=44128702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	44128703	.	C	.	.	PASS	END=44128707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	44128708	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:60:60
chr2	44128709	.	T	.	.	PASS	END=44128714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr2	44132780	.	A	.	.	PASS	END=44132889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	44132890	.	A	.	.	PASS	END=44132897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	44132898	.	G	.	.	PASS	END=44132913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	44132914	.	T	.	.	PASS	END=44132915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	44132916	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:73:60
chr2	44132917	.	G	.	.	PASS	END=44132954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr2	44132955	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:63:60
chr2	44132956	.	A	.	.	PASS	END=44132967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	44132968	.	C	.	.	PASS	END=44132970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr2	44139520	.	A	.	.	PASS	END=44139557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr2	44139558	.	G	.	.	PASS	END=44139563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	44139564	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:64:76:60
chr2	44139565	.	A	.	.	PASS	END=44139633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	44139634	.	C	.	.	PASS	END=44139647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	44139648	.	A	.	.	PASS	END=44139671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	44139672	.	T	.	.	PASS	END=44139678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	44139679	.	A	.	.	PASS	END=44139685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	44139686	.	T	.	.	PASS	END=44139700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr2	44139701	.	T	.	.	PASS	END=44139712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	44139713	.	G	.	.	PASS	END=44139717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr2	44139718	.	A	.	.	PASS	END=44139738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	44139739	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:29:60
chr2	44139740	.	T	.	.	PASS	END=44139748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	44145113	.	T	.	.	PASS	END=44145115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:59
chr2	44145116	.	A	.	.	PASS	END=44145118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:59
chr2	44145119	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:42:60
chr2	44145120	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr2	44145121	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:21:60
chr2	44145122	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr2	44145123	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:3:60
chr2	44145124	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr2	44145125	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr2	44145126	.	A	.	.	LowGQX	END=44145128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44145129	.	C	.	.	PASS	END=44145130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	44145131	.	C	.	.	PASS	END=44145133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	44145134	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:3:60
chr2	44145135	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:48:60
chr2	44145136	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:2:60
chr2	44145137	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:48:60
chr2	44145138	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:30:60
chr2	44145139	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:54:60
chr2	44145140	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:33:60
chr2	44145141	.	C	.	.	PASS	END=44145146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	44145147	.	T	.	.	PASS	END=44145151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr2	44145152	.	G	.	.	PASS	END=44145191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:59
chr2	44145192	.	C	.	.	PASS	END=44145221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	44145222	.	G	.	.	PASS	END=44145323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	44145344	.	C	.	.	PASS	END=44145373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	44145374	.	G	T	1186.11	PASS	BaseQRankSum=3.076;DP=94;Dels=0.00;FS=1.753;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-0.909;QD=12.62;ReadPosRankSum=-0.810;SB=-626.43	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:52,42:94:99:1216,0,1407:60:99:0.447
chr2	44145375	.	A	.	.	PASS	END=44145521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	44145522	.	C	.	.	PASS	END=44145573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	44145574	.	T	.	.	PASS	END=44145583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	44145584	.	A	.	.	PASS	END=44145588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr2	44152155	.	A	.	.	PASS	END=44152177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	44152178	.	A	.	.	PASS	END=44152179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	44152180	.	G	A	960.99	PASS	BaseQRankSum=1.330;DP=77;Dels=0.00;FS=2.002;HRun=3;HaplotypeScore=3.9454;MQ=60;MQ0=0;MQRankSum=0.382;QD=12.48;ReadPosRankSum=-0.413;SB=-502.91	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,39:77:99:991,0,915:60:99:0.506
chr2	44152181	.	C	.	.	PASS	END=44152212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	44152213	.	T	.	.	PASS	END=44152246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	44152247	.	C	.	.	PASS	END=44152338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	44152339	.	A	.	.	PASS	END=44152347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	44152981	.	G	.	.	PASS	END=44153113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	44153114	.	T	.	.	PASS	END=44153134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	44153135	.	A	.	.	PASS	END=44153151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	44161278	.	A	.	.	PASS	END=44161290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr2	44161291	.	A	.	.	PASS	END=44161298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:48:60
chr2	44161299	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:63:60
chr2	44161300	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:38:27:60
chr2	44161301	.	A	.	.	PASS	END=44161312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr2	44161313	.	G	.	.	PASS	END=44161444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr2	44161445	.	A	.	.	PASS	END=44161457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr2	44161458	.	T	.	.	PASS	END=44161480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr2	44161481	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:60
chr2	44161482	.	C	.	.	PASS	END=44161486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr2	44161842	.	T	.	.	PASS	END=44161860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	44161861	.	A	.	.	PASS	END=44162001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	44162002	.	A	.	.	PASS	END=44162011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	44162012	.	T	.	.	PASS	END=44162034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:79:60
chr2	44162035	.	T	.	.	PASS	END=44162068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr2	44170775	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:66:60
chr2	44170776	.	A	.	.	LowGQX	END=44170777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:18:60
chr2	44170778	.	T	.	.	PASS	END=44170791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr2	44170792	.	C	.	.	PASS	END=44170820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:60
chr2	44170821	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:36:60
chr2	44170822	.	T	.	.	PASS	END=44170832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr2	44170833	.	A	.	.	PASS	END=44170844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	44170845	.	C	.	.	PASS	END=44170846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:69:60
chr2	44170847	.	A	.	.	PASS	END=44170881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	44170882	.	C	.	.	PASS	END=44170931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	44170932	.	C	.	.	PASS	END=44170984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	44170985	.	T	.	.	PASS	END=44171030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	44171031	.	C	.	.	PASS	END=44171056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr2	44171057	.	C	.	.	PASS	END=44171083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr2	44171084	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:75:60
chr2	44172420	.	C	.	.	PASS	END=44172426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr2	44172427	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:48:60
chr2	44172428	.	A	.	.	PASS	END=44172443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr2	44172444	.	A	C	544.92	PASS	BaseQRankSum=0.477;DP=43;Dels=0.00;FS=2.968;HRun=1;HaplotypeScore=4.8401;MQ=60;MQ0=0;MQRankSum=1.700;QD=12.67;ReadPosRankSum=-0.257;SB=-275.22	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:19,24:43:99:575,0,461:60:99:0.558
chr2	44172445	.	T	.	.	PASS	END=44172450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr2	44172451	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:52:60
chr2	44172452	.	T	.	.	PASS	END=44172499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr2	44172500	.	C	.	.	PASS	END=44172515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	44172516	.	A	.	.	PASS	END=44172599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	44172600	.	A	.	.	PASS	END=44172607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	44173201	.	C	.	.	PASS	END=44173208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr2	44173209	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:48:60
chr2	44173210	.	A	.	.	PASS	END=44173235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr2	44173236	.	G	.	.	PASS	END=44173250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	44173251	.	C	.	.	PASS	END=44173355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	44173356	.	T	.	.	PASS	END=44173392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	44173393	.	G	.	.	PASS	END=44173421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	44173422	.	T	G	348.28	PASS	BaseQRankSum=-1.958;DP=52;Dels=0.00;FS=2.753;HRun=1;HaplotypeScore=7.6178;MQ=60;MQ0=0;MQRankSum=-0.168;QD=6.70;ReadPosRankSum=1.622;SB=-206.53	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:31,21:52:99:378,0,752:60:99:0.404
chr2	44173423	.	G	.	.	PASS	END=44173433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	44174345	.	T	.	.	PASS	END=44174365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	44174366	.	A	.	.	PASS	END=44174441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	44174442	.	A	.	.	PASS	END=44174509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	44174510	.	C	.	.	PASS	END=44174516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	44174517	.	A	.	.	PASS	END=44174548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr2	44174549	.	A	.	.	PASS	END=44174559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr2	44174560	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:66:60
chr2	44174819	.	C	.	.	PASS	END=44174852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	44174853	.	G	.	.	PASS	END=44174895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	44174896	.	C	.	.	PASS	END=44174957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	44174958	.	T	.	.	PASS	END=44174965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr2	44175210	.	G	.	.	PASS	END=44175249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	44175250	.	T	.	.	PASS	END=44175270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	44175271	.	T	.	.	PASS	END=44175304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	44175305	.	T	.	.	PASS	END=44175389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	44175500	.	A	.	.	PASS	END=44175599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	44175600	.	T	.	.	PASS	END=44175612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	44175613	.	C	.	.	PASS	END=44175636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr2	44175637	.	A	.	.	PASS	END=44175647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr2	44175648	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:45:60
chr2	44175649	.	C	.	.	PASS	END=44175662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr2	44175663	.	G	.	.	PASS	END=44175702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	44175703	.	C	.	.	PASS	END=44175708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr2	44176680	.	C	.	.	PASS	END=44176711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	44176712	.	A	.	.	PASS	END=44176755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	44176756	.	G	.	.	PASS	END=44176791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	44176792	.	C	.	.	PASS	END=44176838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	44176839	.	A	.	.	PASS	END=44176849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	44177661	.	G	.	.	PASS	END=44177795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	44184467	.	A	.	.	PASS	END=44184503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	44184504	.	A	.	.	PASS	END=44184574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	44184575	.	A	.	.	PASS	END=44184641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	44186303	.	T	.	.	LowGQX	.	GT	./.
chr2	44186304	.	G	.	.	LowGQX	END=44186308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44186309	.	C	.	.	LowGQX	.	GT	./.
chr2	44186310	.	A	.	.	LowGQX	END=44186311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44186312	.	A	.	.	LowGQX	.	GT	./.
chr2	44186313	.	T	.	.	LowGQX	END=44186320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44186321	.	C	.	.	LowGQX	END=44186402	GT	./.
chr2	44187629	.	A	.	.	PASS	END=44187650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr2	44187651	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:56:60
chr2	44187652	.	A	.	.	PASS	END=44187661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr2	44187662	.	C	.	.	PASS	END=44187672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr2	44187673	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:63:60
chr2	44187674	.	A	.	.	PASS	END=44187705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	44187706	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:51:60
chr2	44187707	.	C	.	.	PASS	END=44187772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	44187773	.	C	.	.	PASS	END=44187806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	44187807	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:70:60
chr2	44187808	.	T	.	.	PASS	END=44187824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr2	44190663	.	A	.	.	PASS	END=44190735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr2	44190736	.	G	.	.	PASS	END=44190790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	44190791	.	T	.	.	PASS	END=44190819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	44190820	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:66:60
chr2	44190821	.	A	.	.	PASS	END=44190823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	44190824	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:66:60
chr2	44190825	.	C	.	.	PASS	END=44190866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr2	44190867	.	C	.	.	PASS	END=44190887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr2	44190888	.	A	.	.	PASS	END=44190896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr2	44200695	.	G	.	.	PASS	END=44200833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	44200834	.	C	.	.	PASS	END=44200895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	44200896	.	A	.	.	PASS	END=44200979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	44200980	.	A	.	.	PASS	END=44200997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	44200998	.	T	.	.	PASS	END=44201025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	44201026	.	A	.	.	PASS	END=44201041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	44201042	.	G	.	.	PASS	END=44201074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	44201075	.	C	.	.	PASS	END=44201078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr2	44201079	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:60:60
chr2	44201080	.	A	.	.	PASS	END=44201088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr2	44201089	.	T	.	.	PASS	END=44201090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr2	44201238	.	C	.	.	PASS	END=44201250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr2	44201251	.	C	.	.	PASS	END=44201262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr2	44201263	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:6:60
chr2	44201264	.	T	.	.	PASS	END=44201282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	44201283	.	G	.	.	PASS	END=44201289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr2	44201290	.	G	.	.	PASS	END=44201302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr2	44201303	.	C	.	.	PASS	END=44201324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	44201325	.	G	.	.	PASS	END=44201358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:90:60
chr2	44201359	.	G	.	.	PASS	END=44201375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	44201376	.	T	C	819.41	PASS	BaseQRankSum=0.671;DP=90;Dels=0.00;FS=3.280;HRun=0;HaplotypeScore=10.5193;MQ=60;MQ0=0;MQRankSum=0.486;QD=9.10;ReadPosRankSum=-1.203;SB=-217.57	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:55,34:90:99:849,0,1528:60:99:0.382
chr2	44201377	.	T	.	.	PASS	END=44201449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	44201450	.	A	.	.	PASS	END=44201455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	44201456	.	C	.	.	PASS	END=44201485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	44201702	.	A	.	.	PASS	END=44201746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr2	44201747	.	A	.	.	PASS	END=44201799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr2	44201800	.	A	.	.	PASS	END=44201877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	44201878	.	T	.	.	PASS	END=44201897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	44201898	.	C	.	.	PASS	END=44201905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr2	44201906	.	A	.	.	PASS	END=44201948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:59
chr2	44202179	.	C	.	.	PASS	END=44202204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr2	44202205	.	A	.	.	PASS	END=44202221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	44202222	.	A	.	.	PASS	END=44202255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr2	44202256	.	T	.	.	PASS	END=44202281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	44202282	.	A	.	.	PASS	END=44202354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	44202355	.	C	.	.	PASS	END=44202388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr2	44202389	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:57:60
chr2	44202390	.	T	.	.	PASS	END=44202407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr2	44203231	.	G	.	.	PASS	END=44203239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr2	44203240	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:27:60
chr2	44203241	.	C	.	.	PASS	END=44203257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	44203258	.	C	.	.	PASS	END=44203271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr2	44203272	.	T	.	.	PASS	END=44203275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr2	44203276	.	C	.	.	PASS	END=44203280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr2	44203281	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:54:60
chr2	44203282	.	C	.	.	PASS	END=44203285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr2	44203286	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:63:60
chr2	44203287	.	T	.	.	PASS	END=44203299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	44203300	.	G	.	.	PASS	END=44203326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	44203327	.	G	.	.	PASS	END=44203419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	44204082	.	T	.	.	PASS	END=44204084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr2	44204085	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:48:60
chr2	44204086	.	A	.	.	PASS	END=44204093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr2	44204094	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:45:60
chr2	44204095	.	A	.	.	PASS	END=44204113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr2	44204114	.	T	.	.	PASS	END=44204124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	44204125	.	A	.	.	PASS	END=44204141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	44204142	.	T	.	.	PASS	END=44204185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	44204186	.	T	.	.	PASS	END=44204253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	44204254	.	T	.	.	PASS	END=44204299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	44204300	.	T	.	.	PASS	END=44204374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	44204375	.	T	.	.	PASS	END=44204393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	44204394	.	T	.	.	PASS	END=44204410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	44204411	.	A	.	.	PASS	END=44204423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr2	44204424	.	G	.	.	PASS	END=44204466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr2	44206914	.	A	.	.	PASS	END=44206921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	44206922	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:75:60
chr2	44206923	.	A	.	.	PASS	END=44206932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	44206933	.	T	.	.	PASS	END=44206982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	44206983	.	C	.	.	PASS	END=44207067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	44207068	.	A	.	.	PASS	END=44207083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	44207084	.	C	.	.	PASS	END=44207122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr2	44207123	.	A	.	.	PASS	END=44207137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr2	44207138	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:90:60
chr2	44209326	.	C	.	.	PASS	END=44209418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	44209419	.	T	.	.	PASS	END=44209476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	44209477	.	C	T	2090.05	PASS	BaseQRankSum=3.305;DP=129;Dels=0.00;FS=5.716;HRun=1;HaplotypeScore=4.7873;MQ=60;MQ0=0;MQRankSum=0.691;QD=16.20;ReadPosRankSum=0.364;SB=-1101.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:56,73:129:99:2120,0,1505:60:99:0.566
chr2	44209478	.	T	.	.	PASS	END=44209543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	44209544	.	G	.	.	PASS	END=44209599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	44209600	.	A	.	.	PASS	END=44209624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	44222876	.	A	.	.	PASS	END=44222882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:60
chr2	44222883	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr2	44222884	.	C	.	.	PASS	END=44222935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:89:60
chr2	44222936	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:69:60
chr2	44222937	.	C	.	.	PASS	END=44222969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr2	44222970	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:71:60
chr2	44222971	.	T	.	.	PASS	END=44222996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr2	44222997	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:63:60
chr2	44222998	.	C	.	.	PASS	END=44223025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr2	44223026	.	G	.	.	PASS	END=44223137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:60
chr2	44428337	.	A	.	.	LowGQX	END=44429186	GT	./.
chr2	44436347	.	A	.	.	LowGQX	END=44436486	GT	./.
chr2	44445104	.	A	.	.	LowGQX	END=44445262	GT	./.
chr2	44445547	.	A	.	.	LowGQX	END=44445697	GT	./.
chr2	44445977	.	A	.	.	LowGQX	END=44446076	GT	./.
chr2	44457086	.	G	.	.	LowGQX	END=44457185	GT	./.
chr2	44457550	.	A	.	.	LowGQX	END=44457859	GT	./.
chr2	44459420	.	T	.	.	LowGQX	END=44459519	GT	./.
chr2	44471367	.	A	.	.	LowGQX	END=44471525	GT	./.
chr2	44502624	.	T	.	.	PASS	END=44502630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr2	44502631	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:27:60
chr2	44502632	.	C	.	.	PASS	END=44502643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr2	44502644	.	A	.	.	PASS	END=44502663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:81:60
chr2	44502664	.	G	.	.	PASS	END=44502690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr2	44502691	.	G	.	.	PASS	END=44502714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	44502715	.	G	.	.	PASS	END=44502734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	44502735	.	A	.	.	PASS	END=44502774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	44502775	.	C	.	.	PASS	END=44502787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	44502788	.	A	C	1523.98	PASS	BaseQRankSum=1.240;DP=135;Dels=0.00;FS=5.406;HRun=0;HaplotypeScore=9.5117;MQ=60;MQ0=0;MQRankSum=1.200;QD=11.29;ReadPosRankSum=0.317;SB=-645.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:76,59:135:99:1554,0,1869:60:99:0.437
chr2	44502789	.	A	.	.	PASS	END=44502896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	44502897	.	C	.	.	PASS	END=44503013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	44503014	.	T	.	.	PASS	END=44503047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	44503048	.	A	.	.	PASS	END=44503062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	44503063	.	C	.	.	PASS	END=44503083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	44503084	.	A	.	.	PASS	END=44503107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr2	44503108	.	C	.	.	PASS	END=44503124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	44503125	.	T	.	.	PASS	END=44503129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr2	44503130	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr2	44503131	.	G	.	.	PASS	END=44503132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	44503133	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:27:60
chr2	44503134	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:42:60
chr2	44503135	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:24:60
chr2	44503136	.	C	.	.	PASS	END=44503147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	44503148	.	T	.	.	PASS	END=44503155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr2	44507804	.	T	.	.	PASS	END=44507871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	44507872	.	G	.	.	PASS	END=44507911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	44507912	.	C	.	.	PASS	END=44508035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	44508036	.	T	.	.	PASS	END=44508078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	44508079	.	G	.	.	PASS	END=44508085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	44508475	.	T	.	.	PASS	END=44508494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:89:60
chr2	44508495	.	C	.	.	PASS	END=44508548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr2	44508549	.	A	.	.	PASS	END=44508595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	44508596	.	G	.	.	PASS	END=44508669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	44508670	.	C	.	.	PASS	END=44508693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	44508694	.	T	.	.	PASS	END=44508719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr2	44508720	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:45:60
chr2	44508721	.	A	.	.	PASS	END=44508728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr2	44508729	.	A	.	.	PASS	END=44508731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	44512779	.	A	.	.	LowGQX	END=44512781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	44512782	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	44512783	.	G	.	.	LowGQX	END=44512786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	44512787	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	44512788	.	A	.	.	LowGQX	END=44512791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	44512792	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	44512793	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr2	44512794	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	44512795	.	T	.	.	LowGQX	END=44512800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	44512801	.	C	.	.	LowGQX	END=44512803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	44512804	.	A	.	.	LowGQX	END=44512808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	44512809	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	44512810	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr2	44512811	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	44512812	.	A	.	.	LowGQX	END=44512813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	44512814	.	C	.	.	LowGQX	END=44512820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	44512821	.	C	.	.	LowGQX	END=44512822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	44512823	.	T	.	.	LowGQX	END=44512846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	44512847	.	T	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr2	44512848	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr2	44512849	.	C	.	39.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.02:60:9
chr2	44512850	.	T	.	.	LowGQX	END=44512852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr2	44512853	.	A	.	.	LowGQX	END=44512861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	44512862	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	44512863	.	C	.	.	LowGQX	END=44512867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	44512868	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	44512869	.	A	.	.	LowGQX	END=44512873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	44512874	.	A	.	.	LowGQX	END=44512875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	44512876	.	T	.	.	LowGQX	END=44512878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	44513120	.	G	.	.	PASS	END=44513129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	44513130	.	C	.	.	PASS	END=44513168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	44513169	.	A	.	.	PASS	END=44513283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	44513284	.	A	.	.	PASS	END=44513318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	44513319	.	A	.	.	PASS	END=44513344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	44513345	.	A	.	.	PASS	END=44513347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	44527059	.	G	.	.	PASS	END=44527068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr2	44527069	.	C	.	.	PASS	END=44527070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:50:60
chr2	44527071	.	T	.	.	PASS	END=44527094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr2	44527095	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:21:60
chr2	44527096	.	T	.	.	PASS	END=44527135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	44527136	.	G	.	.	PASS	END=44527220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr2	44527221	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:39:60
chr2	44527222	.	A	.	.	PASS	END=44527227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr2	44527228	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:33:60
chr2	44527229	.	G	.	.	PASS	END=44527250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr2	44527251	.	T	.	.	PASS	END=44527280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr2	44528091	.	G	.	.	PASS	END=44528097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	44528098	.	C	.	.	PASS	END=44528134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	44528135	.	T	.	.	PASS	END=44528224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	44528225	.	G	.	.	PASS	END=44528245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	44528246	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:70:75:60
chr2	44528247	.	A	.	.	PASS	END=44528283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:87:60
chr2	44528284	.	C	.	.	PASS	END=44528313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr2	44528314	.	T	.	.	PASS	END=44528316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	44528317	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:54:60
chr2	44528318	.	C	.	.	PASS	END=44528326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr2	44528327	.	C	.	.	PASS	END=44528335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr2	44528336	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:51:60
chr2	44531217	.	C	.	.	PASS	END=44531247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	44531248	.	C	.	.	PASS	END=44531268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:91:60
chr2	44531269	.	T	.	.	PASS	END=44531296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	44531297	.	A	.	.	PASS	END=44531329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	44531330	.	G	.	.	PASS	END=44531377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	44531378	.	T	.	.	PASS	END=44531424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	44531425	.	T	.	.	PASS	END=44531462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	44531463	.	T	.	.	PASS	END=44531483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	44531484	.	C	T	653.87	PASS	BaseQRankSum=-1.086;DP=72;Dels=0.00;FS=1.958;HRun=1;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=0.291;QD=9.08;ReadPosRankSum=0.742;SB=-58.84	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:40,30:72:99:684,0,1226:60:99:0.429
chr2	44531485	.	C	.	.	PASS	END=44531504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	44531505	.	A	.	.	PASS	END=44531511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	44531512	.	T	.	.	PASS	END=44531526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr2	44531527	.	T	.	.	PASS	END=44531528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr2	44539674	.	T	.	.	PASS	END=44539683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr2	44539684	.	C	.	.	PASS	END=44539692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr2	44539693	.	C	.	.	PASS	END=44539730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	44539731	.	G	.	.	PASS	END=44539744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr2	44539745	.	A	.	.	PASS	END=44539771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:78:60
chr2	44539772	.	G	.	.	PASS	END=44539838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	44539839	.	G	.	.	PASS	END=44539891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:82:60
chr2	44539892	.	T	.	.	PASS	END=44539904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	44539905	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:63:60
chr2	44539906	.	A	.	.	PASS	END=44539921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr2	44539922	.	A	.	.	PASS	END=44539930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	44539931	.	A	.	.	PASS	END=44539946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	44540923	.	T	.	.	PASS	END=44540969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr2	44540970	.	A	.	.	PASS	END=44541005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	44541006	.	G	.	.	PASS	END=44541086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	44541087	.	T	.	.	PASS	END=44541118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	44541119	.	T	.	.	PASS	END=44541153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	44541154	.	A	.	.	PASS	END=44541162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	44541163	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:60
chr2	44541164	.	C	.	.	PASS	END=44541171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr2	44541172	.	T	.	.	PASS	END=44541179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr2	44545194	.	T	.	.	LowGQX	END=44545261	GT	./.
chr2	44545262	.	C	.	.	LowGQX	END=44545270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	44545271	.	C	.	.	LowGQX	END=44545272	GT	./.
chr2	44545273	.	A	.	.	LowGQX	END=44545276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	44545277	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	44545278	.	C	.	.	LowGQX	.	GT	./.
chr2	44545279	.	G	.	.	LowGQX	END=44545282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	44545283	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	44545284	.	C	.	.	LowGQX	END=44545289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	44545290	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	44545291	.	G	.	.	LowGQX	.	GT	./.
chr2	44545292	.	T	.	.	LowGQX	END=44545295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	44545296	.	C	.	.	LowGQX	.	GT	./.
chr2	44545297	.	T	.	.	LowGQX	END=44545299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	44545300	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	44545301	.	C	.	.	LowGQX	END=44545310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44545311	.	C	.	.	LowGQX	.	GT	./.
chr2	44545312	.	C	.	.	LowGQX	END=44545315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44545316	.	G	.	.	LowGQX	END=44545344	GT	./.
chr2	44547287	.	A	.	.	PASS	END=44547300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	44547301	.	A	.	.	PASS	END=44547337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr2	44547338	.	G	.	.	PASS	END=44547343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	44547344	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:22:60
chr2	44547345	.	A	.	.	PASS	END=44547350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	44547351	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:19:60
chr2	44547352	.	G	.	.	PASS	END=44547356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr2	44547357	.	G	.	.	PASS	END=44547382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	44547383	.	T	.	.	PASS	END=44547385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr2	44547386	.	A	.	.	PASS	END=44547398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:84:60
chr2	44547399	.	C	.	.	PASS	END=44547408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr2	44547409	.	A	.	.	PASS	END=44547411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	44547412	.	C	.	.	PASS	END=44547450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	44547451	.	C	.	.	PASS	END=44547460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	44547461	.	G	.	.	PASS	END=44547478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	44547479	.	G	.	.	PASS	END=44547531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr2	44547532	.	G	.	.	PASS	END=44547573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:273:99:60
chr2	44547574	.	G	A	3337.78	PASS	BaseQRankSum=3.018;DP=276;Dels=0.00;FS=0.464;HRun=1;HaplotypeScore=19.0831;MQ=60;MQ0=0;MQRankSum=-0.145;QD=12.09;ReadPosRankSum=-0.279;SB=-1807.57	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:139,137:276:99:3338,0,3245:60:99:0.496
chr2	44547575	.	A	.	.	PASS	END=44547615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr2	44547616	.	A	.	.	PASS	END=44547668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr2	44547669	.	A	.	.	PASS	END=44547725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	44547726	.	C	.	.	PASS	END=44547747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	44547748	.	T	.	.	PASS	END=44547762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	44547763	.	G	.	.	PASS	END=44547768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	44547769	.	C	.	.	PASS	END=44547771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	44547772	.	G	.	.	PASS	END=44547780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:96:60
chr2	44547781	.	A	.	.	PASS	END=44547795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr2	44547796	.	T	.	.	PASS	END=44547802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr2	44547803	.	A	.	.	PASS	END=44547823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr2	44547824	.	T	.	.	PASS	END=44547830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	44548490	.	G	.	.	PASS	END=44548506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr2	44548507	.	G	.	.	PASS	END=44548522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	44548523	.	T	.	.	PASS	END=44548589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	44548846	.	C	.	.	PASS	END=44548878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	44548879	.	C	.	.	PASS	END=44548911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	44548912	.	A	.	.	PASS	END=44549019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	44549020	.	A	.	.	PASS	END=44549038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	44549039	.	C	.	.	PASS	END=44549041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	44549868	.	A	.	.	PASS	END=44549889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	44549890	.	T	.	.	PASS	END=44549924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	44549925	.	A	.	.	PASS	END=44549995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	44550399	.	A	.	.	PASS	END=44550462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	44550463	.	A	.	.	PASS	END=44550525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	44550526	.	T	.	.	PASS	END=44550533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:96:60
chr2	44550534	.	A	.	.	PASS	END=44550552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	44553849	.	A	.	.	PASS	END=44553885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	44553886	.	A	.	.	PASS	END=44554036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr2	44554037	.	G	.	.	PASS	END=44554059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	44554060	.	C	.	.	PASS	END=44554069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	44556074	.	A	.	.	PASS	END=44556090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	44556091	.	G	.	.	PASS	END=44556121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr2	44556122	.	G	.	.	PASS	END=44556246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr2	44556247	.	C	.	.	PASS	END=44556253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr2	44559596	.	A	.	.	PASS	END=44559759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	44559760	.	T	.	.	PASS	END=44559791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	44559792	.	G	.	.	PASS	END=44559797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	44565468	.	A	.	.	PASS	END=44565508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	44565509	.	T	.	.	PASS	END=44565527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	44565528	.	C	.	.	PASS	END=44565620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr2	44565621	.	T	.	.	PASS	END=44565673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	44565674	.	A	.	.	PASS	END=44565677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr2	44566284	.	A	.	.	PASS	END=44566446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr2	44566447	.	T	.	.	PASS	END=44566504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr2	44569554	.	A	.	.	PASS	END=44569580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	44569581	.	G	.	.	PASS	END=44569657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	44569658	.	A	.	.	PASS	END=44569686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:89:60
chr2	44569687	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:61:69:60
chr2	44569688	.	C	.	.	PASS	END=44569693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:96:60
chr2	44570882	.	A	.	.	PASS	END=44571088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	44571089	.	T	.	.	PASS	END=44571092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	44571643	.	A	.	.	PASS	END=44571659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	44571660	.	T	.	.	PASS	END=44571681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	44571682	.	A	.	.	PASS	END=44571742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	44573405	.	A	.	.	PASS	END=44573445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr2	44573446	.	T	.	.	PASS	END=44573460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	44573461	.	C	.	.	PASS	END=44573572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:87:60
chr2	44573573	.	A	.	.	PASS	END=44573574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	44586634	.	A	.	.	PASS	END=44586660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	44586661	.	A	.	.	PASS	END=44586674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr2	44586675	.	C	.	.	PASS	END=44586816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr2	44586817	.	T	.	.	PASS	END=44586856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr2	44589114	.	G	.	.	LowGQX	END=44589224	GT	./.
chr2	44589225	.	A	.	.	LowGQX	END=44589229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44589230	.	G	.	.	LowGQX	.	GT	./.
chr2	44589231	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44589232	.	G	.	.	LowGQX	.	GT	./.
chr2	44589233	.	G	.	.	LowGQX	END=44589234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44589235	.	C	.	.	LowGQX	END=44589236	GT	./.
chr2	44589237	.	G	.	.	LowGQX	END=44589247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44589248	.	G	.	.	LowGQX	.	GT	./.
chr2	44589249	.	C	.	.	LowGQX	END=44589257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44589258	.	G	.	.	LowGQX	END=44589259	GT	./.
chr2	44589260	.	C	.	.	LowGQX	END=44589266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44589267	.	T	.	.	LowGQX	.	GT	./.
chr2	44589268	.	G	.	.	LowGQX	END=44589279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44589280	.	G	.	.	LowGQX	END=44589281	GT	./.
chr2	44589282	.	C	.	.	LowGQX	END=44589288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44589289	.	G	.	.	LowGQX	.	GT	./.
chr2	44589290	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44589291	.	G	.	.	LowGQX	.	GT	./.
chr2	44589292	.	A	.	.	LowGQX	END=44589295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44589296	.	C	.	.	LowGQX	.	GT	./.
chr2	44589297	.	C	.	.	LowGQX	END=44589299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44589300	.	C	.	.	LowGQX	.	GT	./.
chr2	44589301	.	T	.	.	LowGQX	END=44589307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44589308	.	A	.	.	LowGQX	.	GT	./.
chr2	44589309	.	C	.	.	LowGQX	END=44589311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44589312	.	T	.	.	LowGQX	.	GT	./.
chr2	44589313	.	T	.	.	LowGQX	END=44589314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44589315	.	C	.	.	LowGQX	.	GT	./.
chr2	44589316	.	C	.	.	LowGQX	END=44589319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44589320	.	G	.	.	LowGQX	.	GT	./.
chr2	44589321	.	G	.	.	LowGQX	END=44589324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44599853	.	A	.	.	LowGQX	END=44600052	GT	./.
chr2	44617308	.	T	.	.	LowGQX	END=44617462	GT	./.
chr2	44621976	.	G	.	.	LowGQX	END=44622075	GT	./.
chr2	44622124	.	T	.	.	LowGQX	END=44622223	GT	./.
chr2	44683668	.	A	.	.	LowGQX	END=44683767	GT	./.
chr2	44776606	.	C	.	.	LowGQX	END=44776765	GT	./.
chr2	44858537	.	A	.	.	LowGQX	END=44858696	GT	./.
chr2	44931403	.	A	.	.	LowGQX	END=44931502	GT	./.
chr2	44933404	.	C	.	.	LowGQX	END=44933425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44933426	.	G	.	.	LowGQX	END=44933427	GT	./.
chr2	44933428	.	C	.	.	LowGQX	END=44933442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44933443	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	44933444	.	G	.	.	LowGQX	END=44933452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	44933453	.	T	.	.	LowGQX	.	GT	./.
chr2	44933454	.	G	.	.	LowGQX	END=44933457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44933458	.	T	.	.	LowGQX	.	GT	./.
chr2	44933459	.	G	.	.	LowGQX	END=44933465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44933466	.	T	.	.	LowGQX	.	GT	./.
chr2	44933467	.	T	.	.	LowGQX	END=44933474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44933475	.	C	.	.	LowGQX	.	GT	./.
chr2	44933476	.	T	.	.	LowGQX	END=44933503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44934466	.	C	.	.	LowGQX	END=44934619	GT	./.
chr2	44942410	.	T	.	.	LowGQX	END=44942509	GT	./.
chr2	44970689	.	A	.	.	LowGQX	END=44970848	GT	./.
chr2	44981176	.	C	.	.	LowGQX	END=44981275	GT	./.
chr2	44993527	.	T	.	.	LowGQX	END=44993566	GT	./.
chr2	44993567	.	A	.	.	LowGQX	END=44993598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44993599	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	44993600	.	G	.	.	LowGQX	END=44993702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999164	.	A	.	.	LowGQX	END=44999166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999167	.	G	.	.	LowGQX	.	GT	./.
chr2	44999168	.	T	.	.	LowGQX	END=44999171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999172	.	C	.	.	LowGQX	.	GT	./.
chr2	44999173	.	A	.	.	LowGQX	END=44999174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999175	.	T	.	.	LowGQX	.	GT	./.
chr2	44999176	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999177	.	G	.	.	LowGQX	.	GT	./.
chr2	44999178	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999179	.	A	.	.	LowGQX	.	GT	./.
chr2	44999180	.	A	.	.	LowGQX	END=44999182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999183	.	G	.	.	LowGQX	END=44999184	GT	./.
chr2	44999185	.	A	.	.	LowGQX	END=44999186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999187	.	A	.	.	LowGQX	END=44999188	GT	./.
chr2	44999189	.	C	.	.	LowGQX	END=44999190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999191	.	C	.	.	LowGQX	END=44999193	GT	./.
chr2	44999194	.	A	.	.	LowGQX	END=44999198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999199	.	T	.	.	LowGQX	.	GT	./.
chr2	44999200	.	A	.	.	LowGQX	END=44999201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999202	.	G	.	.	LowGQX	.	GT	./.
chr2	44999203	.	A	.	.	LowGQX	END=44999204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999205	.	G	.	.	LowGQX	.	GT	./.
chr2	44999206	.	A	.	.	LowGQX	END=44999209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999210	.	C	.	.	LowGQX	.	GT	./.
chr2	44999211	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999212	.	T	.	.	LowGQX	.	GT	./.
chr2	44999213	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999214	.	C	.	.	LowGQX	.	GT	./.
chr2	44999215	.	A	.	.	LowGQX	END=44999218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999219	.	C	.	.	LowGQX	.	GT	./.
chr2	44999220	.	C	.	.	LowGQX	END=44999224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999225	.	T	.	.	LowGQX	.	GT	./.
chr2	44999226	.	C	.	.	LowGQX	END=44999228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999229	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	44999230	.	T	.	.	LowGQX	END=44999231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999232	.	A	.	.	LowGQX	.	GT	./.
chr2	44999233	.	T	.	.	LowGQX	END=44999234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999235	.	T	.	.	LowGQX	.	GT	./.
chr2	44999236	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999237	.	G	.	.	LowGQX	END=44999240	GT	./.
chr2	44999241	.	A	.	.	LowGQX	END=44999246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999247	.	G	.	.	LowGQX	END=44999248	GT	./.
chr2	44999249	.	A	.	.	LowGQX	END=44999253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999254	.	A	.	.	LowGQX	END=44999255	GT	./.
chr2	44999256	.	A	.	.	LowGQX	END=44999261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	44999262	.	C	.	.	LowGQX	.	GT	./.
chr2	44999263	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	45169193	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr2	45169194	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:60
chr2	45169195	.	C	.	.	LowGQX	END=45169197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr2	45169198	.	C	.	.	PASS	END=45169199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	45169200	.	C	.	.	LowGQX	END=45169201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr2	45169202	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:60
chr2	45169203	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr2	45169204	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr2	45169205	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr2	45169206	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:60
chr2	45169207	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr2	45169208	.	C	.	.	PASS	END=45169210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	45169211	.	C	.	.	LowGQX	END=45169212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:60
chr2	45169213	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr2	45169214	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr2	45169215	.	A	.	.	PASS	END=45169217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	45169218	.	T	.	.	LowGQX	END=45169219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:27:60
chr2	45169220	.	T	.	.	PASS	END=45169229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr2	45169230	.	T	.	.	PASS	END=45169240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:39:60
chr2	45169241	.	T	.	.	PASS	END=45169247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:60
chr2	45169248	.	T	.	.	PASS	END=45169252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:57:60
chr2	45169253	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:18:60
chr2	45169254	.	G	.	.	PASS	END=45169258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:57:60
chr2	45169259	.	C	.	.	PASS	END=45169281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr2	45169282	.	C	.	.	PASS	END=45169326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:75:60
chr2	45169327	.	T	.	.	PASS	END=45169333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:57:60
chr2	45169334	.	A	.	.	PASS	END=45169366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr2	45169367	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:30:60
chr2	45169368	.	G	.	.	PASS	END=45169373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:39:60
chr2	45169374	.	C	.	.	PASS	END=45169377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:33:60
chr2	45169378	.	A	.	.	PASS	END=45169381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr2	45169382	.	G	.	.	PASS	END=45169383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:33:60
chr2	45169384	.	C	.	.	PASS	END=45169386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr2	45169387	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:6:60
chr2	45169388	.	G	.	.	PASS	END=45169392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr2	45169393	.	C	.	.	PASS	END=45169398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	45169399	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:27:60
chr2	45169400	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:63:60
chr2	45169401	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:84:60
chr2	45169402	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:53:60
chr2	45169403	.	G	.	.	PASS	END=45169409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr2	45169410	.	G	.	.	PASS	END=45169415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr2	45169416	.	G	.	.	PASS	END=45169418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:84:60
chr2	45169419	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:48:60
chr2	45169420	.	T	.	.	PASS	END=45169449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr2	45169450	.	C	.	.	PASS	END=45169465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	45169466	.	G	.	.	PASS	END=45169478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	45169479	.	T	.	.	PASS	END=45169493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	45169494	.	C	.	.	PASS	END=45169537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	45169538	.	C	.	.	PASS	END=45169572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	45169573	.	C	.	.	PASS	END=45169617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr2	45169618	.	C	.	.	PASS	END=45169743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr2	45169744	.	C	.	.	PASS	END=45169770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr2	45169771	.	G	.	.	PASS	END=45169816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	45169817	.	C	.	.	PASS	END=45169856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	45169857	.	A	.	.	PASS	END=45169878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	45169879	.	C	.	.	PASS	END=45169899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	45169900	.	C	.	.	PASS	END=45169922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr2	45169923	.	A	.	.	PASS	END=45169935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr2	45169936	.	C	.	.	PASS	END=45169938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr2	45169939	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:24:60
chr2	45169940	.	C	.	.	PASS	END=45169942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr2	45169943	.	A	.	.	PASS	END=45169944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr2	45169945	.	C	.	.	PASS	END=45169950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr2	45169951	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr2	45169952	.	C	.	.	PASS	END=45169953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr2	45169954	.	C	.	.	PASS	END=45169963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr2	45169964	.	C	.	.	PASS	END=45169976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	45169977	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:60
chr2	45169978	.	C	.	.	PASS	END=45169986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	45169987	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr2	45169988	.	C	.	.	PASS	END=45169989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	45169990	.	A	.	.	PASS	END=45169991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	45169992	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:60
chr2	45169993	.	A	.	.	PASS	END=45169999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	45170000	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	45170001	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:2:60
chr2	45170002	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr2	45170003	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:12:60
chr2	45170004	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr2	45170005	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr2	45170006	.	A	.	.	PASS	END=45170007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	45170008	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	45170009	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr2	45170010	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr2	45170011	.	C	.	.	PASS	END=45170013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	45170014	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr2	45170015	.	C	.	.	PASS	END=45170030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	45170031	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:1:60
chr2	45170032	.	C	.	.	PASS	END=45170045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	45170046	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr2	45170047	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr2	45170048	.	A	.	.	LowGQX	END=45170049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	45170050	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	45170051	.	T	.	.	LowGQX	END=45170064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	45170065	.	C	.	.	LowGQX	END=45170066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	45170067	.	C	.	.	LowGQX	END=45170071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	45170072	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr2	45170073	.	G	.	.	LowGQX	END=45170081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	45170082	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr2	45170083	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr2	45170084	.	C	.	.	LowGQX	END=45170085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	45170086	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr2	45170087	.	A	.	.	LowGQX	END=45170088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr2	45170089	.	G	.	.	LowGQX	END=45170090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr2	45170091	.	C	.	.	LowGQX	END=45170096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	45170097	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr2	45170098	.	G	.	.	LowGQX	END=45170100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	45171656	.	C	.	.	LowGQX	END=45171670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	45171671	.	T	.	.	PASS	END=45171689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	45171690	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr2	45171691	.	T	.	.	PASS	END=45171696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr2	45171697	.	T	.	.	PASS	END=45171704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	45171705	.	A	.	.	PASS	END=45171707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr2	45171708	.	C	.	.	PASS	END=45171713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	45171714	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:69:60
chr2	45171715	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:38:60
chr2	45171716	.	C	.	.	PASS	END=45171720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	45171721	.	C	.	.	PASS	END=45171756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	45171757	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:55:60
chr2	45171758	.	C	.	.	PASS	END=45171774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr2	45171775	.	G	.	.	PASS	END=45171794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	45171795	.	A	.	.	PASS	END=45171838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	45171839	.	C	.	.	PASS	END=45171841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	45171842	.	A	G	2917.29	PASS	DP=119;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=25.6172;MQ=60;MQ0=0;QD=24.52;SB=-1612.41	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,119:119:99:2950,217,0:60:99:1.000
chr2	45171843	.	G	.	.	PASS	END=45171917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	45171918	.	T	.	.	PASS	END=45171926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	45171927	.	T	.	.	PASS	END=45171945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	45171946	.	C	.	.	PASS	END=45171950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:60
chr2	45233258	.	A	.	.	PASS	END=45233290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	45233291	.	C	.	.	PASS	END=45233320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr2	45233321	.	G	.	.	PASS	END=45233461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:262:99:60
chr2	45233462	.	C	.	.	PASS	END=45233612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr2	45233613	.	T	.	.	PASS	END=45233663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	45233664	.	A	.	.	PASS	END=45233675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	45235639	.	C	.	.	PASS	END=45235656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	45235657	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:66:60
chr2	45235658	.	G	.	.	PASS	END=45235667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:95:60
chr2	45235668	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:59:60
chr2	45235669	.	A	.	.	PASS	END=45235670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	45235671	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:42:21:60
chr2	45235672	.	A	.	.	PASS	END=45235728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr2	45235729	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:69:60
chr2	45235730	.	T	.	.	PASS	END=45235734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr2	45235735	.	A	.	.	PASS	END=45235736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:69:60
chr2	45235737	.	C	.	.	PASS	END=45235740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	45235741	.	T	.	.	PASS	END=45235750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:96:60
chr2	45235751	.	G	.	.	PASS	END=45235764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	45235765	.	C	.	.	PASS	END=45235803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	45235804	.	G	.	.	PASS	END=45235859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr2	45235860	.	G	.	.	PASS	END=45236042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr2	45236043	.	G	.	.	PASS	END=45236126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr2	45236127	.	C	.	.	PASS	END=45236162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr2	45236163	.	C	.	.	PASS	END=45236189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	45236190	.	C	.	.	PASS	END=45236200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	45236201	.	C	.	.	PASS	END=45236219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	45236220	.	C	.	.	PASS	END=45236239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	45236240	.	G	.	.	PASS	END=45236248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	45236249	.	T	.	.	PASS	END=45236251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	45236252	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:54:60
chr2	45236253	.	G	.	.	PASS	END=45236258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr2	45236259	.	T	.	.	PASS	END=45236262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	45236263	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:42:60
chr2	45236264	.	C	.	.	PASS	END=45236271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr2	45236272	.	G	.	.	PASS	END=45236275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr2	45236276	.	G	.	.	PASS	END=45236291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	45236292	.	G	.	.	PASS	END=45236295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr2	45236296	.	G	.	.	LowGQX	END=45236297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	45236298	.	G	.	.	PASS	END=45236299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	45236300	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:27:60
chr2	45616447	.	A	.	.	LowGQX	END=45616455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	45616456	.	A	.	.	LowGQX	END=45616740	GT	./.
chr2	45620082	.	A	.	.	LowGQX	END=45620270	GT	./.
chr2	45640251	.	A	.	.	LowGQX	END=45640434	GT	./.
chr2	45645502	.	A	.	.	LowGQX	END=45645682	GT	./.
chr2	45646925	.	A	.	.	LowGQX	END=45647035	GT	./.
chr2	45704124	.	A	.	.	LowGQX	END=45704223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	45715317	.	G	.	.	LowGQX	END=45715474	GT	./.
chr2	45773869	.	A	.	.	LowGQX	END=45773980	GT	./.
chr2	45774657	.	A	.	.	LowGQX	END=45774756	GT	./.
chr2	45778262	.	A	.	.	LowGQX	END=45778451	GT	./.
chr2	45780760	.	A	.	.	LowGQX	END=45780818	GT	./.
chr2	45780819	.	T	.	.	LowGQX	END=45780871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	45789790	.	A	.	.	LowGQX	END=45789897	GT	./.
chr2	45800344	.	A	.	.	LowGQX	END=45800523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	45801764	.	A	.	.	LowGQX	END=45801864	GT	./.
chr2	45807012	.	A	.	.	LowGQX	END=45807154	GT	./.
chr2	45808830	.	A	.	.	LowGQX	END=45808999	GT	./.
chr2	45812725	.	T	.	.	LowGQX	END=45812915	GT	./.
chr2	45826586	.	A	.	.	LowGQX	END=45826749	GT	./.
chr2	45826750	.	T	.	.	LowGQX	END=45826957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	45826958	.	A	.	.	LowGQX	END=45826976	GT	./.
chr2	45829040	.	A	.	.	LowGQX	END=45829224	GT	./.
chr2	45832491	.	G	.	.	LowGQX	END=45832590	GT	./.
chr2	45879238	.	C	.	.	LowGQX	END=45879246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	45879247	.	T	.	.	LowGQX	END=45879254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	45879255	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	45879256	.	G	.	.	LowGQX	END=45879258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	45879259	.	T	.	.	LowGQX	.	GT	./.
chr2	45879260	.	T	.	.	LowGQX	END=45879273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	45879274	.	T	.	.	LowGQX	.	GT	./.
chr2	45879275	.	C	.	.	LowGQX	END=45879277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	45879278	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	45879279	.	G	.	.	LowGQX	.	GT	./.
chr2	45879280	.	A	.	.	LowGQX	END=45879292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	45879293	.	G	.	.	LowGQX	.	GT	./.
chr2	45879294	.	A	.	.	LowGQX	END=45879306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	45879307	.	G	.	.	LowGQX	.	GT	./.
chr2	45879308	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	45879309	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	45879310	.	C	.	.	LowGQX	END=45879315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	45879316	.	G	.	.	LowGQX	.	GT	./.
chr2	45879317	.	C	.	.	LowGQX	END=45879322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	45879323	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	45879324	.	G	.	.	LowGQX	.	GT	./.
chr2	45879325	.	T	.	.	LowGQX	END=45879337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	45879338	.	G	.	.	LowGQX	.	GT	./.
chr2	45879339	.	C	.	.	LowGQX	END=45879354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	45879355	.	A	.	.	LowGQX	.	GT	./.
chr2	45879356	.	C	.	.	LowGQX	END=45879368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	45879369	.	C	.	.	LowGQX	END=45879544	GT	./.
chr2	45879545	.	T	.	.	LowGQX	END=45879554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	45879555	.	C	.	.	LowGQX	.	GT	./.
chr2	45879556	.	T	.	.	LowGQX	END=45879565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	45879566	.	G	.	.	LowGQX	.	GT	./.
chr2	45879567	.	A	.	.	LowGQX	END=45879569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	45879570	.	C	.	.	LowGQX	.	GT	./.
chr2	45879571	.	G	.	.	LowGQX	END=45879578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	45879579	.	G	.	.	LowGQX	.	GT	./.
chr2	45879580	.	A	.	.	LowGQX	END=45879583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	45879584	.	C	.	.	LowGQX	.	GT	./.
chr2	45879585	.	T	.	.	LowGQX	END=45879589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46070121	.	T	.	.	LowGQX	END=46070220	GT	./.
chr2	46203566	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:69:60
chr2	46203567	.	G	.	.	PASS	END=46203577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr2	46203578	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:66:60
chr2	46203579	.	A	.	.	PASS	END=46203605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr2	46203606	.	A	.	.	PASS	END=46203644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	46203645	.	G	.	.	PASS	END=46203729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	46206083	.	T	.	.	LowGQX	END=46206182	GT	./.
chr2	46207428	.	T	.	.	LowGQX	END=46207527	GT	./.
chr2	46211688	.	A	.	.	LowGQX	END=46211821	GT	./.
chr2	46228541	.	A	.	.	LowGQX	END=46228687	GT	./.
chr2	46231679	.	A	.	.	LowGQX	END=46231775	GT	./.
chr2	46231776	.	G	.	.	LowGQX	END=46231779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46234599	.	A	.	.	LowGQX	END=46234648	GT	./.
chr2	46234649	.	A	.	.	LowGQX	END=46234802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46237481	.	A	.	.	LowGQX	END=46237658	GT	./.
chr2	46237800	.	T	.	.	LowGQX	END=46237828	GT	./.
chr2	46237829	.	G	.	.	LowGQX	END=46237844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46237845	.	G	.	.	LowGQX	.	GT	./.
chr2	46237846	.	T	.	.	LowGQX	END=46237863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46237864	.	G	.	.	LowGQX	.	GT	./.
chr2	46237865	.	A	.	.	LowGQX	END=46237878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46237879	.	T	.	.	LowGQX	.	GT	./.
chr2	46237880	.	T	.	.	LowGQX	END=46237881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46237882	.	T	.	.	LowGQX	.	GT	./.
chr2	46237883	.	T	.	.	LowGQX	END=46237890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46237891	.	A	.	.	LowGQX	.	GT	./.
chr2	46237892	.	G	.	.	LowGQX	END=46237899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46313345	.	A	.	.	LowGQX	END=46313503	GT	./.
chr2	46372230	.	A	.	.	LowGQX	END=46372372	GT	./.
chr2	46378178	.	A	.	.	LowGQX	END=46378188	GT	./.
chr2	46378189	.	G	.	.	LowGQX	END=46378190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46378191	.	G	.	.	LowGQX	END=46378193	GT	./.
chr2	46378194	.	G	.	.	LowGQX	END=46378197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46378198	.	T	.	.	LowGQX	END=46378200	GT	./.
chr2	46378201	.	G	.	.	LowGQX	END=46378210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46378211	.	T	.	.	LowGQX	.	GT	./.
chr2	46378212	.	G	.	.	LowGQX	END=46378218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46378219	.	T	.	.	LowGQX	.	GT	./.
chr2	46378220	.	G	.	.	LowGQX	END=46378225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46378226	.	T	.	.	LowGQX	.	GT	./.
chr2	46378227	.	G	.	.	LowGQX	END=46378234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46378235	.	T	.	.	LowGQX	.	GT	./.
chr2	46378236	.	G	.	.	LowGQX	END=46378240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46378241	.	A	.	.	LowGQX	.	GT	./.
chr2	46378242	.	C	.	.	LowGQX	END=46378246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46378247	.	T	.	.	LowGQX	.	GT	./.
chr2	46378248	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46378249	.	A	.	.	LowGQX	END=46378250	GT	./.
chr2	46378251	.	G	.	.	LowGQX	END=46378318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46378319	.	T	.	.	LowGQX	.	GT	./.
chr2	46378320	.	G	.	.	LowGQX	END=46378338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46378339	.	A	.	.	LowGQX	END=46378370	GT	./.
chr2	46386743	.	A	.	.	LowGQX	END=46386851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46386852	.	G	T	9.30	LowGQX	BaseQRankSum=1.026;DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=1.026;QD=2.32;ReadPosRankSum=-1.026;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:38.75:39,0,39:60:9:0.500
chr2	46386853	.	G	.	.	LowGQX	END=46386922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	46411872	.	A	.	.	LowGQX	END=46411882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46411883	.	A	.	.	LowGQX	.	GT	./.
chr2	46411884	.	G	.	.	LowGQX	END=46411899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46411900	.	T	.	.	LowGQX	.	GT	./.
chr2	46411901	.	G	.	.	LowGQX	END=46411998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46411999	.	T	.	.	LowGQX	END=46412022	GT	./.
chr2	46524994	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:50:60
chr2	46524995	.	C	.	.	PASS	END=46525011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:60
chr2	46525012	.	G	.	.	PASS	END=46525029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	46525030	.	T	.	.	PASS	END=46525127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	46573961	.	T	.	.	PASS	END=46573980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	46573981	.	T	.	.	PASS	END=46573993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr2	46573994	.	C	.	.	PASS	END=46574014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr2	46574015	.	T	.	.	PASS	END=46574046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr2	46574047	.	A	.	.	PASS	END=46574061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr2	46574062	.	G	.	.	PASS	END=46574078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr2	46574079	.	G	.	.	PASS	END=46574113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	46574114	.	G	.	.	PASS	END=46574132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	46574133	.	C	.	.	PASS	END=46574211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	46574212	.	G	.	.	PASS	END=46574227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	46574228	.	T	.	.	PASS	END=46574253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:98:60
chr2	46583239	.	C	.	.	PASS	END=46583277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	46583277	.	C	CCG	4350.68	PASS	BaseQRankSum=5.029;DP=128;FS=36.218;HRun=0;HaplotypeScore=1225.8176;MQ=60;MQ0=0;MQRankSum=-0.684;QD=33.99;ReadPosRankSum=0.979;SB=-866.33	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,95:128:99:4351,0,251:60:99:0.760
chr2	46583278	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:125:99:60
chr2	46583279	.	C	T	2492.54	PASS	BaseQRankSum=0.054;DP=119;Dels=0.00;FS=21.954;HRun=0;HaplotypeScore=130.4448;MQ=60;MQ0=0;MQRankSum=0.778;QD=20.95;ReadPosRankSum=1.944;SB=-529.08	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:21,94:119:99:2523,0,460:60:99:0.817
chr2	46583280	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:122:99:60
chr2	46583281	.	C	T	2915.59	PASS	BaseQRankSum=0.953;DP=127;Dels=0.00;FS=24.929;HRun=0;HaplotypeScore=130.4448;MQ=60;MQ0=0;MQRankSum=1.628;QD=22.96;ReadPosRankSum=3.245;SB=-632.98	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:18,107:127:99:2946,0,210:60:99:0.856
chr2	46583282	.	C	.	.	PASS	END=46583297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	46583298	.	G	.	.	PASS	END=46583337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr2	46583338	.	A	.	.	PASS	END=46583492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr2	46583812	.	C	.	.	PASS	END=46583875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	46583876	.	G	.	.	PASS	END=46583909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	46583910	.	C	.	.	PASS	END=46583946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	46583947	.	G	.	.	PASS	END=46583973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	46583974	.	C	.	.	PASS	END=46583998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr2	46587726	.	T	.	.	PASS	END=46587858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	46587859	.	A	.	.	PASS	END=46587946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	46587973	.	C	.	.	PASS	END=46587996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	46587997	.	T	.	.	PASS	END=46588023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	46588024	.	G	.	.	PASS	END=46588040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr2	46588041	.	C	.	.	PASS	END=46588071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr2	46588072	.	C	.	.	PASS	END=46588182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:250:99:60
chr2	46588183	.	C	.	.	PASS	END=46588217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr2	46588218	.	C	.	.	PASS	END=46588244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	46588245	.	T	.	.	PASS	END=46588257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	46588258	.	G	.	.	PASS	END=46588276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	46588277	.	T	.	.	PASS	END=46588280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	46596915	.	C	.	.	PASS	END=46596988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	46596989	.	A	.	.	PASS	END=46597039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	46597040	.	A	.	.	PASS	END=46597061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	46597062	.	T	.	.	PASS	END=46597086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	46597087	.	T	.	.	PASS	END=46597118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	46597119	.	G	.	.	PASS	END=46597123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr2	46602778	.	G	.	.	PASS	END=46602795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	46602796	.	T	.	.	PASS	END=46602828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	46602829	.	T	.	.	PASS	END=46602910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr2	46602911	.	G	.	.	PASS	END=46602977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr2	46602978	.	T	.	.	PASS	END=46603010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr2	46603011	.	G	.	.	PASS	END=46603020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	46603021	.	G	.	.	PASS	END=46603027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	46603627	.	A	.	.	PASS	END=46603670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:257:99:60
chr2	46603671	.	C	G	3311.54	PASS	BaseQRankSum=-1.275;DP=307;Dels=0.00;FS=0.948;HRun=0;HaplotypeScore=42.9269;MQ=60;MQ0=0;MQRankSum=1.643;QD=10.79;ReadPosRankSum=1.301;SB=-1463.71	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:153,151:307:99:3312,0,3768:60:99:0.497
chr2	46603672	.	C	.	.	PASS	END=46603718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:287:99:60
chr2	46603719	.	C	.	.	PASS	END=46603849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:311:99:60
chr2	46603850	.	C	.	.	PASS	END=46603908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:60
chr2	46603909	.	T	.	.	PASS	END=46603943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr2	46604982	.	G	.	.	PASS	END=46605015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	46605016	.	G	.	.	PASS	END=46605124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	46605125	.	C	.	.	PASS	END=46605140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	46605141	.	G	.	.	PASS	END=46605168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	46605169	.	A	.	.	PASS	END=46605186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:89:60
chr2	46605187	.	C	.	.	PASS	END=46605195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr2	46605196	.	T	.	.	PASS	END=46605210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	46605211	.	C	.	.	PASS	END=46605227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr2	46605228	.	T	.	.	PASS	END=46605241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr2	46605242	.	A	.	.	PASS	END=46605247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	46605248	.	A	.	.	PASS	END=46605252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	46605253	.	A	.	.	PASS	END=46605269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr2	46605270	.	T	.	.	PASS	END=46605271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	46605272	.	T	.	.	PASS	END=46605276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	46605277	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:3:60
chr2	46605745	.	G	.	.	PASS	END=46605753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	46605754	.	T	.	.	PASS	END=46605781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:81:60
chr2	46605782	.	T	.	.	PASS	END=46605791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	46605792	.	C	.	.	PASS	END=46605835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	46605836	.	A	.	.	PASS	END=46605902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	46605903	.	C	.	.	PASS	END=46605934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	46605935	.	T	.	.	PASS	END=46605953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	46605954	.	G	C	716.20	PASS	BaseQRankSum=-0.008;DP=57;Dels=0.00;FS=1.250;HRun=0;HaplotypeScore=6.6812;MQ=60;MQ0=0;MQRankSum=-0.583;QD=12.56;ReadPosRankSum=0.982;SB=-176.35	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,29:57:99:746,0,736:60:99:0.509
chr2	46605955	.	G	.	.	PASS	END=46605957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	46607315	.	G	.	.	PASS	END=46607323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr2	46607324	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:63:60
chr2	46607325	.	A	.	.	PASS	END=46607328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	46607329	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:33:60
chr2	46607330	.	C	.	.	PASS	END=46607339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	46607340	.	T	.	.	PASS	END=46607344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	46607345	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:48:60
chr2	46607346	.	C	.	.	PASS	END=46607357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	46607358	.	C	.	.	PASS	END=46607360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	46607361	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:18:60
chr2	46607362	.	T	.	.	PASS	END=46607363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr2	46607364	.	A	.	.	PASS	END=46607365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	46607366	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:30:60
chr2	46607367	.	C	.	.	PASS	END=46607370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr2	46607371	.	T	.	.	PASS	END=46607372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr2	46607373	.	T	.	.	PASS	END=46607390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	46607391	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:48:60
chr2	46607392	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:66:60
chr2	46607393	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:48:60
chr2	46607394	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:72:60
chr2	46607395	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:51:60
chr2	46607396	.	C	.	.	PASS	END=46607400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr2	46607401	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:51:60
chr2	46607402	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:99:60
chr2	46607403	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:72:60
chr2	46607404	.	C	.	.	PASS	END=46607433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	46607434	.	G	.	.	PASS	END=46607468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	46607469	.	C	.	.	PASS	END=46607481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	46607482	.	G	.	.	PASS	END=46607488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	46607489	.	C	.	.	PASS	END=46607520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr2	46607521	.	C	.	.	PASS	END=46607542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr2	46607543	.	G	.	.	PASS	END=46607649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:60
chr2	46607650	.	C	.	.	PASS	END=46607687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr2	46607688	.	C	.	.	PASS	END=46607696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	46607697	.	C	.	.	PASS	END=46607721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	46607722	.	C	.	.	PASS	END=46607771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	46607772	.	T	.	.	PASS	END=46607799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	46607800	.	A	.	.	PASS	END=46607837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr2	46607838	.	T	.	.	PASS	END=46607858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	46607859	.	A	.	.	PASS	END=46607861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr2	46607862	.	T	.	.	PASS	END=46607864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	46607865	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:45:60
chr2	46607866	.	A	.	.	PASS	END=46607870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	46607871	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:45:60
chr2	46607872	.	T	.	.	PASS	END=46607878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	46607879	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:57:60
chr2	46607880	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:78:60
chr2	46607881	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:42:60
chr2	46607882	.	C	.	.	PASS	END=46607897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	46607898	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:26:60
chr2	46607899	.	G	.	.	PASS	END=46607905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	46607906	.	C	.	.	PASS	END=46607907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr2	46608684	.	G	.	.	PASS	END=46608705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	46608706	.	C	.	.	PASS	END=46608758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr2	46608759	.	A	.	.	PASS	END=46608855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr2	46608856	.	A	.	.	PASS	END=46608869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	46608870	.	T	.	.	PASS	END=46608912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	46609063	.	G	.	.	PASS	END=46609077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	46609078	.	C	.	.	PASS	END=46609096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr2	46609097	.	G	.	.	PASS	END=46609113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr2	46609114	.	G	.	.	PASS	END=46609229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr2	46609230	.	T	.	.	PASS	END=46609253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr2	46609254	.	C	.	.	PASS	END=46609279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	46609513	.	T	.	.	PASS	END=46609519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	46609520	.	C	.	.	PASS	END=46609541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	46609542	.	C	.	.	PASS	END=46609653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	46609654	.	A	.	.	PASS	END=46609684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	46609685	.	C	.	.	PASS	END=46609700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:98:60
chr2	46609701	.	C	.	.	PASS	END=46609702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr2	46609703	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr2	46609704	.	G	.	.	PASS	END=46609710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr2	46609711	.	G	.	.	PASS	END=46609734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr2	46609735	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:42:60
chr2	46609736	.	A	.	.	PASS	END=46609740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr2	46609741	.	G	.	.	PASS	END=46609753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	46609754	.	T	.	.	PASS	END=46609763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	46609764	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:9:60
chr2	46609765	.	C	.	.	PASS	END=46609780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:60
chr2	46609781	.	G	.	.	PASS	END=46609788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	46611597	.	T	.	.	PASS	END=46611622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	46611623	.	G	.	.	PASS	END=46611692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	46611693	.	T	.	.	PASS	END=46611742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	46611743	.	A	.	.	PASS	END=46611780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	46611781	.	C	.	.	PASS	END=46611803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr2	46611804	.	G	.	.	PASS	END=46611832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr2	46611833	.	A	.	.	PASS	END=46611838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr2	46611839	.	T	.	.	PASS	END=46611850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr2	46706724	.	G	.	.	LowGQX	END=46706773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46706774	.	G	.	.	LowGQX	.	GT	./.
chr2	46706775	.	T	.	.	LowGQX	END=46706779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46706780	.	C	.	.	LowGQX	.	GT	./.
chr2	46706781	.	G	.	.	LowGQX	END=46706795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46706796	.	G	.	.	LowGQX	.	GT	./.
chr2	46706797	.	G	.	.	LowGQX	END=46706841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46707543	.	G	.	.	LowGQX	END=46707563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	46707564	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	46707565	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	46707566	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	46707567	.	C	.	.	LowGQX	END=46707596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	46707597	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	46707598	.	G	.	.	LowGQX	END=46707625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46707626	.	C	.	.	LowGQX	END=46707660	GT	./.
chr2	46707661	.	A	.	.	LowGQX	END=46707864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46707865	.	G	.	5.79	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr2	46707866	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr2	46707867	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	46707868	.	A	.	.	LowGQX	END=46707871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	46707872	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	46707873	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	46707874	.	C	.	.	LowGQX	END=46707875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46707876	.	G	.	.	LowGQX	.	GT	./.
chr2	46707877	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46707878	.	T	.	.	LowGQX	.	GT	./.
chr2	46707879	.	G	.	.	LowGQX	END=46707881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46707882	.	G	.	.	LowGQX	.	GT	./.
chr2	46707883	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46707884	.	A	.	.	LowGQX	.	GT	./.
chr2	46707885	.	A	.	.	LowGQX	END=46707886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46707887	.	A	.	.	LowGQX	END=46707891	GT	./.
chr2	46707892	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46707893	.	C	.	.	LowGQX	.	GT	./.
chr2	46707894	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46707895	.	C	.	.	LowGQX	.	GT	./.
chr2	46707896	.	C	.	.	LowGQX	END=46707897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46707898	.	C	.	.	LowGQX	.	GT	./.
chr2	46707899	.	G	.	.	LowGQX	END=46707900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46707901	.	C	.	.	LowGQX	END=46707902	GT	./.
chr2	46707903	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46711382	.	G	.	.	LowGQX	END=46711564	GT	./.
chr2	46739168	.	G	.	.	LowGQX	END=46739852	GT	./.
chr2	46770153	.	G	.	.	LowGQX	END=46770363	GT	./.
chr2	46770873	.	C	.	.	LowGQX	END=46770904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46770905	.	T	.	.	LowGQX	.	GT	./.
chr2	46770906	.	G	.	.	LowGQX	END=46770933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46770934	.	T	.	.	LowGQX	END=46770945	GT	./.
chr2	46770946	.	G	.	.	LowGQX	END=46770960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46770961	.	T	C	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr2	46770962	.	T	.	.	LowGQX	END=46770971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	46770972	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	46787663	.	G	.	.	LowGQX	END=46787696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46787697	.	A	.	.	LowGQX	END=46787828	GT	./.
chr2	46799844	.	A	.	.	LowGQX	END=46799943	GT	./.
chr2	46803224	.	A	.	.	LowGQX	END=46803392	GT	./.
chr2	46803698	.	A	.	.	LowGQX	END=46803797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46808065	.	A	.	.	LowGQX	END=46808186	GT	./.
chr2	46808187	.	G	.	.	LowGQX	END=46808224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	46808615	.	A	.	.	LowGQX	END=46808732	GT	./.
chr2	46815232	.	G	.	.	LowGQX	END=46815331	GT	./.
chr2	46819008	.	T	.	.	LowGQX	END=46819107	GT	./.
chr2	46819612	.	A	.	.	LowGQX	END=46819724	GT	./.
chr2	46839365	.	A	.	.	LowGQX	END=46839485	GT	./.
chr2	46840829	.	T	.	.	LowGQX	END=46840980	GT	./.
chr2	46842074	.	A	.	.	LowGQX	END=46842114	GT	./.
chr2	46842115	.	T	.	.	LowGQX	END=46842122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46842123	.	C	.	.	LowGQX	.	GT	./.
chr2	46842124	.	T	.	.	LowGQX	END=46842129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46842130	.	T	.	.	LowGQX	.	GT	./.
chr2	46842131	.	A	.	.	LowGQX	END=46842149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46842150	.	T	.	.	LowGQX	.	GT	./.
chr2	46842151	.	T	.	.	LowGQX	END=46842265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46842266	.	T	.	.	LowGQX	END=46842305	GT	./.
chr2	46844320	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46844321	.	T	.	.	LowGQX	.	GT	./.
chr2	46844322	.	G	.	.	LowGQX	END=46844410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46844411	.	C	.	.	LowGQX	END=46844479	GT	./.
chr2	46845895	.	C	.	.	LowGQX	END=46845994	GT	./.
chr2	46846744	.	A	.	.	LowGQX	END=46846779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46846780	.	A	.	.	LowGQX	.	GT	./.
chr2	46846781	.	A	.	.	LowGQX	END=46846823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46846824	.	G	.	.	LowGQX	.	GT	./.
chr2	46846825	.	G	.	.	LowGQX	END=46846831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46846832	.	G	.	.	LowGQX	END=46846833	GT	./.
chr2	46846834	.	T	.	.	LowGQX	END=46846842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46846843	.	G	.	.	LowGQX	.	GT	./.
chr2	46850901	.	A	.	.	LowGQX	END=46851008	GT	./.
chr2	46851285	.	A	.	.	LowGQX	END=46851384	GT	./.
chr2	46985668	.	C	.	.	LowGQX	END=46986389	GT	./.
chr2	46986390	.	A	.	.	LowGQX	END=46986588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	46986589	.	T	.	.	LowGQX	END=46987282	GT	./.
chr2	47043958	.	A	.	.	LowGQX	END=47044057	GT	./.
chr2	47044386	.	G	.	.	LowGQX	END=47044572	GT	./.
chr2	47045295	.	C	.	.	LowGQX	END=47045394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47049219	.	C	.	.	LowGQX	END=47049278	GT	./.
chr2	47049279	.	T	.	.	LowGQX	END=47049283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47049284	.	G	.	.	LowGQX	.	GT	./.
chr2	47049285	.	C	.	.	LowGQX	END=47049307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47049308	.	A	.	.	LowGQX	.	GT	./.
chr2	47049309	.	A	.	.	LowGQX	END=47049318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47083036	.	A	.	.	LowGQX	END=47083135	GT	./.
chr2	47085224	.	G	.	.	LowGQX	END=47085349	GT	./.
chr2	47132551	.	A	.	.	PASS	END=47132556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	47132557	.	T	.	.	PASS	END=47132568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	47132569	.	T	.	.	PASS	END=47132577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	47132578	.	A	.	.	PASS	END=47132624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:97:60
chr2	47132625	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:73:1:60
chr2	47132626	.	A	.	.	PASS	END=47132644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	47132645	.	T	.	.	PASS	END=47132712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	47132713	.	T	.	.	PASS	END=47132724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	47132725	.	A	.	.	PASS	END=47132728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	47132729	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:60:60
chr2	47132730	.	C	.	.	PASS	END=47132743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:80:60
chr2	47132744	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr2	47132745	.	A	.	.	PASS	END=47132756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr2	47132757	.	G	.	.	PASS	END=47132758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:75:60
chr2	47132759	.	T	.	.	PASS	END=47132764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr2	47132765	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:75:60
chr2	47132766	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:33:60
chr2	47132767	.	G	.	.	PASS	END=47132772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:69:60
chr2	47132773	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:66:60
chr2	47132774	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:99:60
chr2	47132775	.	C	.	.	PASS	END=47132777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:54:60
chr2	47132778	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:48:60
chr2	47132779	.	A	.	.	PASS	END=47132784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:63:60
chr2	47133042	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr2	47133043	.	T	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr2	47133044	.	T	.	.	LowGQX	END=47133046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	47133047	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr2	47133048	.	T	.	.	LowGQX	END=47133055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	47133056	.	G	.	.	LowGQX	END=47133057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	47133058	.	C	.	.	LowGQX	END=47133059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	47133060	.	C	.	16.44	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.18:60:0
chr2	47133061	.	A	.	.	LowGQX	END=47133066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr2	47133067	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr2	47133068	.	T	.	.	LowGQX	END=47133070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	47133071	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr2	47133072	.	A	.	.	LowGQX	END=47133073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr2	47133074	.	T	.	.	LowGQX	END=47133078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	47133079	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr2	47133080	.	A	.	.	LowGQX	END=47133082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr2	47133083	.	G	.	.	LowGQX	END=47133084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr2	47133085	.	C	.	.	LowGQX	END=47133088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	47133089	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr2	47133090	.	C	.	.	LowGQX	END=47133097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	47133098	.	G	.	.	LowGQX	.	GT	./.
chr2	47133099	.	G	.	.	LowGQX	END=47133102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	47133103	.	G	.	.	LowGQX	.	GT	./.
chr2	47133104	.	C	.	.	LowGQX	END=47133123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47133124	.	G	.	.	LowGQX	.	GT	./.
chr2	47133125	.	A	.	.	LowGQX	END=47133141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47134898	.	C	.	.	PASS	END=47134903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr2	47134904	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:63:60
chr2	47134905	.	A	.	.	PASS	END=47134914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr2	47134915	.	G	.	.	PASS	END=47134935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:94:60
chr2	47134936	.	C	.	.	PASS	END=47134948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	47134949	.	C	.	.	PASS	END=47134970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	47134971	.	G	.	.	PASS	END=47135093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	47135094	.	T	.	.	PASS	END=47135104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	47135105	.	A	.	.	PASS	END=47135134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr2	47135135	.	C	.	.	PASS	END=47135153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr2	47135154	.	T	.	.	PASS	END=47135159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr2	47136111	.	G	.	.	PASS	END=47136132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:84:60
chr2	47136133	.	C	.	.	PASS	END=47136151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	47136152	.	G	.	.	PASS	END=47136179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	47136180	.	T	.	.	PASS	END=47136264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	47136265	.	G	.	.	PASS	END=47136285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	47136286	.	T	.	.	PASS	END=47136316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	47136317	.	C	.	.	PASS	END=47136329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	47136330	.	A	.	.	PASS	END=47136347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr2	47136348	.	A	.	.	PASS	END=47136357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr2	47136358	.	A	.	.	PASS	END=47136361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:93:60
chr2	47144266	.	C	.	.	LowGQX	END=47144273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47144274	.	T	.	.	LowGQX	.	GT	./.
chr2	47144275	.	C	.	.	LowGQX	END=47144277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47144278	.	A	.	.	LowGQX	.	GT	./.
chr2	47144279	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47144280	.	A	.	.	LowGQX	END=47144281	GT	./.
chr2	47144282	.	A	.	.	LowGQX	END=47144285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47144286	.	A	.	.	LowGQX	END=47144287	GT	./.
chr2	47144288	.	C	.	.	LowGQX	END=47144291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47144292	.	T	.	.	LowGQX	.	GT	./.
chr2	47144293	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47144294	.	A	.	.	LowGQX	END=47144295	GT	./.
chr2	47144296	.	C	.	.	LowGQX	END=47144298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47144299	.	T	.	.	LowGQX	.	GT	./.
chr2	47144300	.	A	.	.	LowGQX	END=47144338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47144339	.	T	.	.	LowGQX	END=47144340	GT	./.
chr2	47144341	.	C	.	.	LowGQX	END=47144343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47144344	.	A	.	.	LowGQX	.	GT	./.
chr2	47144345	.	G	.	.	LowGQX	END=47144349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47144350	.	T	.	.	LowGQX	.	GT	./.
chr2	47144351	.	C	.	.	LowGQX	END=47144371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47144372	.	A	.	.	LowGQX	END=47144425	GT	./.
chr2	47168645	.	C	.	.	PASS	END=47168652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	47168653	.	C	.	.	PASS	END=47168654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:56:60
chr2	47168655	.	C	.	.	PASS	END=47168656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	47168657	.	T	.	.	PASS	END=47168699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	47168700	.	A	.	.	PASS	END=47168725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	47168726	.	G	.	.	PASS	END=47168807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	47168808	.	G	.	.	PASS	END=47168853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	47168854	.	T	.	.	PASS	END=47168878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	47168879	.	A	.	.	PASS	END=47168884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	47177500	.	A	.	.	LowGQX	END=47177667	GT	./.
chr2	47178682	.	T	.	.	LowGQX	END=47178836	GT	./.
chr2	47183976	.	A	.	.	LowGQX	END=47184148	GT	./.
chr2	47185553	.	T	.	.	LowGQX	END=47185712	GT	./.
chr2	47201752	.	A	.	.	LowGQX	END=47201851	GT	./.
chr2	47202110	.	A	.	.	LowGQX	END=47202125	GT	./.
chr2	47202126	.	C	.	.	LowGQX	END=47202149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47202150	.	C	.	.	LowGQX	.	GT	./.
chr2	47202151	.	G	.	.	LowGQX	END=47202244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47205929	.	A	.	.	LowGQX	END=47206048	GT	./.
chr2	47220579	.	C	.	.	LowGQX	END=47220596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47220597	.	T	.	.	LowGQX	.	GT	./.
chr2	47220598	.	G	.	.	LowGQX	END=47220606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47220607	.	G	.	.	LowGQX	END=47220608	GT	./.
chr2	47220609	.	G	.	.	LowGQX	END=47220612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47220613	.	G	.	.	LowGQX	END=47220614	GT	./.
chr2	47220615	.	T	.	.	LowGQX	END=47220619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47220620	.	G	.	.	LowGQX	.	GT	./.
chr2	47220621	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47220622	.	G	.	.	LowGQX	END=47220678	GT	./.
chr2	47221494	.	A	.	.	LowGQX	END=47221655	GT	./.
chr2	47222257	.	G	.	.	LowGQX	END=47222356	GT	./.
chr2	47233059	.	A	.	.	LowGQX	END=47233109	GT	./.
chr2	47233110	.	G	.	.	LowGQX	END=47233200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47233772	.	C	.	.	LowGQX	END=47233871	GT	./.
chr2	47238468	.	A	.	.	LowGQX	END=47238480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47238481	.	T	.	.	LowGQX	.	GT	./.
chr2	47238482	.	G	.	.	LowGQX	END=47238508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47238509	.	T	.	.	LowGQX	END=47238554	GT	./.
chr2	47238555	.	G	.	.	LowGQX	END=47238576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	47248999	.	A	.	.	LowGQX	END=47249050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47249051	.	A	.	.	LowGQX	END=47249120	GT	./.
chr2	47250526	.	T	.	.	LowGQX	END=47250535	GT	./.
chr2	47250536	.	G	.	.	LowGQX	END=47250538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47250539	.	C	.	.	LowGQX	.	GT	./.
chr2	47250540	.	C	.	.	LowGQX	END=47250625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47251413	.	T	.	.	LowGQX	END=47251512	GT	./.
chr2	47256361	.	A	.	.	LowGQX	END=47256525	GT	./.
chr2	47273452	.	A	.	.	LowGQX	END=47273572	GT	./.
chr2	47274391	.	T	.	.	LowGQX	END=47274490	GT	./.
chr2	47277086	.	A	.	.	LowGQX	END=47277187	GT	./.
chr2	47278883	.	A	.	.	LowGQX	END=47278949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47278950	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	47278951	.	C	.	.	LowGQX	END=47279021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47287906	.	A	.	.	LowGQX	END=47288112	GT	./.
chr2	47300839	.	A	.	.	LowGQX	END=47300899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47300900	.	C	.	.	LowGQX	.	GT	./.
chr2	47300901	.	G	.	.	LowGQX	END=47300922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47300923	.	A	.	.	LowGQX	END=47301064	GT	./.
chr2	47314146	.	T	.	.	LowGQX	END=47314217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47314218	.	A	.	.	LowGQX	END=47314269	GT	./.
chr2	47317408	.	C	.	.	LowGQX	END=47317513	GT	./.
chr2	47357050	.	T	.	.	LowGQX	END=47357149	GT	./.
chr2	47357308	.	C	.	.	LowGQX	END=47357407	GT	./.
chr2	47378395	.	A	.	.	LowGQX	END=47378493	GT	./.
chr2	47378494	.	G	.	.	LowGQX	END=47378541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47378542	.	A	.	.	LowGQX	.	GT	./.
chr2	47378543	.	G	.	.	LowGQX	END=47378656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47380076	.	A	.	.	LowGQX	END=47380175	GT	./.
chr2	47382301	.	C	.	.	LowGQX	END=47382400	GT	./.
chr2	47387880	.	T	.	.	LowGQX	END=47387979	GT	./.
chr2	47388860	.	A	.	.	LowGQX	END=47388984	GT	./.
chr2	47388985	.	A	.	.	LowGQX	END=47388999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	47389423	.	A	.	.	LowGQX	END=47389533	GT	./.
chr2	47389616	.	A	.	.	LowGQX	END=47389803	GT	./.
chr2	47394603	.	T	.	.	LowGQX	END=47394627	GT	./.
chr2	47394628	.	T	.	.	LowGQX	END=47394635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47394636	.	C	.	.	LowGQX	.	GT	./.
chr2	47394637	.	A	.	.	LowGQX	END=47394641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47394642	.	G	.	.	LowGQX	.	GT	./.
chr2	47394643	.	G	.	.	LowGQX	END=47394646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47394647	.	A	.	.	LowGQX	END=47394649	GT	./.
chr2	47394650	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47394651	.	G	.	.	LowGQX	.	GT	./.
chr2	47394652	.	G	.	.	LowGQX	END=47394658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47394659	.	C	.	.	LowGQX	END=47394661	GT	./.
chr2	47394662	.	A	.	.	LowGQX	END=47394666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47394667	.	T	.	.	LowGQX	.	GT	./.
chr2	47394668	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47394669	.	C	.	.	LowGQX	.	GT	./.
chr2	47394670	.	T	.	.	LowGQX	END=47394673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47394674	.	A	.	.	LowGQX	.	GT	./.
chr2	47394675	.	A	.	.	LowGQX	END=47394681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47394682	.	A	.	.	LowGQX	.	GT	./.
chr2	47394683	.	A	.	.	LowGQX	END=47394688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47394689	.	C	.	.	LowGQX	.	GT	./.
chr2	47394690	.	G	.	.	LowGQX	END=47394693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47394694	.	G	.	.	LowGQX	.	GT	./.
chr2	47394695	.	T	.	.	LowGQX	END=47394700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47394701	.	T	.	.	LowGQX	.	GT	./.
chr2	47394702	.	G	.	.	LowGQX	END=47394704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47394705	.	C	.	.	LowGQX	.	GT	./.
chr2	47394706	.	G	.	.	LowGQX	END=47394715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47394716	.	C	.	.	LowGQX	END=47394717	GT	./.
chr2	47394718	.	A	.	.	LowGQX	END=47394725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47394726	.	G	.	.	LowGQX	.	GT	./.
chr2	47394727	.	G	.	.	LowGQX	END=47394741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47394742	.	A	.	.	LowGQX	.	GT	./.
chr2	47394743	.	G	.	.	LowGQX	END=47394760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47394761	.	C	.	.	LowGQX	.	GT	./.
chr2	47394762	.	A	.	.	LowGQX	END=47394775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47394776	.	T	.	.	LowGQX	END=47394789	GT	./.
chr2	47397839	.	T	.	.	LowGQX	END=47397938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47399526	.	T	.	.	LowGQX	END=47399625	GT	./.
chr2	47403565	.	C	.	.	LowGQX	END=47403664	GT	./.
chr2	47537651	.	C	.	.	LowGQX	END=47537998	GT	./.
chr2	47596193	.	A	.	.	LowGQX	END=47596210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	47596211	.	C	.	.	LowGQX	.	GT	./.
chr2	47596212	.	G	.	.	LowGQX	END=47596217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	47596218	.	G	.	.	LowGQX	.	GT	./.
chr2	47596219	.	A	.	.	LowGQX	END=47596222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	47596223	.	G	.	.	LowGQX	.	GT	./.
chr2	47596224	.	A	.	.	LowGQX	END=47596226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	47596227	.	C	.	.	LowGQX	.	GT	./.
chr2	47596228	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47596229	.	C	.	.	LowGQX	.	GT	./.
chr2	47596230	.	C	.	.	LowGQX	END=47596236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47596237	.	G	.	.	LowGQX	.	GT	./.
chr2	47596238	.	G	.	.	LowGQX	END=47596240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47596241	.	C	.	.	LowGQX	.	GT	./.
chr2	47596242	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47596243	.	G	.	.	LowGQX	.	GT	./.
chr2	47596244	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47596245	.	G	.	.	LowGQX	END=47596246	GT	./.
chr2	47596247	.	G	.	.	LowGQX	END=47596248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47596249	.	G	.	.	LowGQX	.	GT	./.
chr2	47596250	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47596251	.	C	.	.	LowGQX	.	GT	./.
chr2	47596252	.	G	.	.	LowGQX	END=47596262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47596263	.	C	.	.	LowGQX	END=47596266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	47596267	.	T	.	.	LowGQX	END=47596280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	47596281	.	C	.	.	LowGQX	END=47596309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	47596310	.	A	.	.	LowGQX	END=47596311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr2	47596312	.	G	.	.	LowGQX	END=47596320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	47596321	.	C	A	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.727;QD=0.79;ReadPosRankSum=0.727;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,1:4:30.29:30,0,72:60:3:0.250
chr2	47596322	.	T	.	.	LowGQX	END=47596327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	47596328	.	C	.	.	LowGQX	END=47596331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	47596332	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr2	47596333	.	A	.	.	LowGQX	END=47596341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	47596342	.	C	.	6.90	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.02:60:0
chr2	47596343	.	G	.	.	LowGQX	END=47596346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	47596347	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr2	47596348	.	C	.	.	LowGQX	END=47596356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	47596357	.	G	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr2	47596358	.	A	.	.	LowGQX	END=47596377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	47596378	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr2	47596379	.	G	.	.	LowGQX	END=47596382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	47596383	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr2	47596384	.	C	.	.	LowGQX	END=47596390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	47596391	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr2	47596392	.	G	.	.	LowGQX	END=47596403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	47596594	.	C	.	.	PASS	END=47596600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr2	47596601	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:2:60
chr2	47596602	.	T	.	.	PASS	END=47596606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr2	47596607	.	G	.	.	PASS	END=47596616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	47596617	.	G	.	.	PASS	END=47596621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr2	47596622	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:60:60
chr2	47596623	.	C	.	.	PASS	END=47596643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr2	47596644	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:72:60
chr2	47596645	.	A	.	.	PASS	END=47596751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:84:60
chr2	47596752	.	C	.	.	PASS	END=47596753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:68:60
chr2	47596754	.	G	.	.	PASS	END=47596757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr2	47596758	.	T	.	.	PASS	END=47596762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr2	47596763	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:57:60
chr2	47596764	.	G	.	.	PASS	END=47596770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr2	47596771	.	A	.	.	PASS	END=47596781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr2	47596782	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:72:60
chr2	47596783	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:30:60
chr2	47596784	.	C	.	.	PASS	END=47596785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	47596786	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:45:60
chr2	47596787	.	C	.	.	PASS	END=47596789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr2	47596790	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:27:60
chr2	47596791	.	C	.	.	PASS	END=47596796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr2	47596797	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:29:60
chr2	47596798	.	A	.	.	PASS	END=47596811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr2	47596812	.	G	.	.	PASS	END=47596815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	47596816	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:9:60
chr2	47596817	.	G	.	.	PASS	END=47596835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr2	47596836	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:3:60
chr2	47596837	.	C	.	.	PASS	END=47596842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr2	47596843	.	G	.	.	PASS	END=47596852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr2	47596853	.	C	.	.	PASS	END=47596855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	47596856	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:21:60
chr2	47596857	.	G	.	.	PASS	END=47596868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	47596869	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	47596870	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	47596871	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	47596872	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	47596873	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr2	47596874	.	C	.	.	PASS	END=47596875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	47596876	.	G	.	.	LowGQX	END=47596877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	47596878	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	47596879	.	C	.	.	LowGQX	END=47596882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr2	47596883	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	47596884	.	G	.	.	LowGQX	END=47596887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr2	47596888	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	47596889	.	G	.	.	LowGQX	END=47596890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr2	47596891	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	47596892	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	47596893	.	G	.	.	PASS	END=47596895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	47596896	.	A	.	.	LowGQX	END=47596897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	47596898	.	G	.	.	LowGQX	END=47596905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	47596906	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:60
chr2	47596907	.	C	.	.	LowGQX	END=47596909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr2	47596910	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	47596911	.	C	.	.	LowGQX	END=47596921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	47596922	.	C	.	.	LowGQX	END=47596924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	47596925	.	C	.	.	LowGQX	END=47596928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	47596929	.	T	.	.	LowGQX	END=47596948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	47600551	.	G	.	.	PASS	END=47600637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:78:60
chr2	47600638	.	G	.	.	PASS	END=47600670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	47600671	.	C	.	.	PASS	END=47600705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	47600706	.	A	.	.	PASS	END=47600760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	47600896	.	T	.	.	PASS	END=47600913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	47600914	.	T	.	.	PASS	END=47600975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr2	47600976	.	G	.	.	PASS	END=47601028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	47601029	.	G	.	.	PASS	END=47601105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:93:60
chr2	47601106	.	T	C	697.33	PASS	BaseQRankSum=-0.703;DP=65;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.8404;MQ=60;MQ0=0;MQRankSum=-1.990;QD=10.73;ReadPosRankSum=-1.044;SB=-420.03	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,31:65:99:727,0,848:60:99:0.477
chr2	47601107	.	G	.	.	PASS	END=47601124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	47601125	.	T	.	.	PASS	END=47601126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	47601127	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:55:60
chr2	47601128	.	T	.	.	PASS	END=47601150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr2	47601151	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:62:60
chr2	47601152	.	C	.	.	PASS	END=47601174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr2	47601175	.	G	.	.	PASS	END=47601181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	47601182	.	A	.	.	PASS	END=47601183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:42:60
chr2	47601184	.	C	.	.	PASS	END=47601185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	47601186	.	T	.	.	PASS	END=47601192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr2	47601193	.	T	.	.	PASS	END=47601195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr2	47601196	.	G	.	.	PASS	END=47601198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	47601199	.	T	.	.	PASS	END=47601209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	47601210	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	47601211	.	T	.	.	PASS	END=47601212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	47601213	.	G	.	.	LowGQX	END=47601223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	47601224	.	G	.	.	LowGQX	END=47601227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	47601228	.	A	.	.	LowGQX	END=47601236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	47601237	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr2	47601238	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:27:60
chr2	47602322	.	A	.	.	PASS	END=47602334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	47602335	.	G	.	.	PASS	END=47602380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:82:60
chr2	47602381	.	T	.	.	PASS	END=47602473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	47602474	.	T	.	.	PASS	END=47602487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	47602488	.	C	.	.	PASS	END=47602489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr2	47604102	.	G	.	.	PASS	END=47604151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	47604152	.	G	.	.	PASS	END=47604174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	47604175	.	A	.	.	PASS	END=47604246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	47604247	.	G	.	.	PASS	END=47604259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	47604260	.	A	.	.	PASS	END=47604267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	47604812	.	G	.	.	LowGQX	END=47604962	GT	./.
chr2	47606041	.	T	.	.	PASS	END=47606087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr2	47606088	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:63:60
chr2	47606089	.	C	.	.	PASS	END=47606096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	47606097	.	G	.	.	PASS	END=47606170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	47606171	.	T	.	.	PASS	END=47606228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	47606229	.	T	.	.	PASS	END=47606244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr2	47606857	.	A	.	.	PASS	END=47606896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	47606897	.	T	.	.	PASS	END=47606906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	47606907	.	G	.	.	PASS	END=47606949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	47606950	.	A	.	.	PASS	END=47606971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	47606972	.	A	.	.	PASS	END=47607057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr2	47607058	.	G	.	.	PASS	END=47607109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	47607110	.	T	.	.	PASS	END=47607121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	47607122	.	A	.	.	PASS	END=47607159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	47612254	.	T	.	.	PASS	END=47612281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	47612282	.	A	.	.	PASS	END=47612334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	47612335	.	T	.	.	PASS	END=47612383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	47612384	.	G	.	.	PASS	END=47612400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	47613660	.	A	.	.	PASS	END=47613730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	47613731	.	G	.	.	PASS	END=47613761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	47613762	.	T	.	.	PASS	END=47613803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	47630280	.	T	.	.	PASS	END=47630282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	47630283	.	G	.	.	PASS	END=47630297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr2	47630298	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:72:60
chr2	47630299	.	T	.	.	PASS	END=47630311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr2	47630312	.	G	.	.	PASS	END=47630341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:86:60
chr2	47630342	.	G	.	.	PASS	END=47630372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	47630373	.	G	.	.	PASS	END=47630461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	47630462	.	G	.	.	PASS	END=47630508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	47630509	.	C	.	.	PASS	END=47630542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr2	47630543	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:75:60
chr2	47630544	.	G	.	.	PASS	END=47630548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr2	47630549	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:63:60
chr2	47630550	.	C	G	424.18	PASS	BaseQRankSum=-1.474;DP=37;Dels=0.00;FS=1.830;HRun=3;HaplotypeScore=9.5214;MQ=60;MQ0=0;MQRankSum=0.866;QD=11.46;ReadPosRankSum=-0.775;SB=-128.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:18,19:37:99:454,0,546:60:99:0.514
chr2	47630551	.	G	.	.	PASS	END=47630561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr2	47630562	.	T	.	.	PASS	END=47630564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr2	47630565	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:54:60
chr2	47630566	.	G	.	.	PASS	END=47630575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr2	47630576	.	C	.	.	PASS	END=47630582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr2	47630583	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:30:60
chr2	47630584	.	T	.	.	PASS	END=47630592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	47635489	.	G	.	.	PASS	END=47635506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr2	47635507	.	T	.	.	PASS	END=47635531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:69:60
chr2	47635532	.	T	.	.	PASS	END=47635535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	47635536	.	T	.	.	PASS	END=47635539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:60
chr2	47635540	.	G	.	.	PASS	END=47635541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:42:60
chr2	47635542	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:39:60
chr2	47635543	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:12:60
chr2	47635544	.	A	.	.	PASS	END=47635545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	47635546	.	A	.	.	PASS	END=47635547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:51:60
chr2	47635548	.	A	.	.	PASS	END=47635549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr2	47635550	.	T	.	.	PASS	END=47635552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:48:60
chr2	47635553	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:63:60
chr2	47635554	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:39:60
chr2	47635555	.	A	.	.	PASS	END=47635557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:48:60
chr2	47635558	.	G	.	.	PASS	END=47635561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr2	47635562	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:93:60
chr2	47635563	.	G	.	.	PASS	END=47635566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:57:60
chr2	47635567	.	T	.	.	PASS	END=47635568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr2	47635569	.	A	.	.	PASS	END=47635570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:63:60
chr2	47635571	.	T	.	.	PASS	END=47635574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr2	47635575	.	A	.	.	PASS	END=47635576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr2	47635577	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:66:60
chr2	47635578	.	A	.	.	PASS	END=47635583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr2	47635584	.	G	.	.	PASS	END=47635587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr2	47635588	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:63:60
chr2	47635589	.	T	.	.	PASS	END=47635592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr2	47635593	.	G	.	.	PASS	END=47635601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr2	47635602	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:60:60
chr2	47635603	.	T	.	.	PASS	END=47635604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr2	47635605	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:60
chr2	47635606	.	T	.	.	PASS	END=47635607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr2	47635608	.	C	.	.	PASS	END=47635609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:66:60
chr2	47635610	.	G	.	.	PASS	END=47635613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr2	47635614	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:69:60
chr2	47635615	.	G	.	.	PASS	END=47635618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr2	47635619	.	G	.	.	PASS	END=47635649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	47635650	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:72:60
chr2	47635651	.	G	.	.	PASS	END=47635707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	47635708	.	T	.	.	PASS	END=47635745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr2	47637182	.	T	.	.	PASS	END=47637194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	47637195	.	A	.	.	PASS	END=47637204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:59
chr2	47637205	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:36:59
chr2	47637206	.	A	.	.	PASS	END=47637212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:59
chr2	47637213	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:59
chr2	47637214	.	A	.	.	PASS	END=47637220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:59
chr2	47637221	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:59
chr2	47637222	.	T	.	.	PASS	END=47637231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:59
chr2	47637232	.	G	.	.	PASS	END=47637234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr2	47637235	.	T	.	.	PASS	END=47637238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	47637239	.	C	.	.	PASS	END=47637249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr2	47637250	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:18:60
chr2	47637251	.	T	.	.	PASS	END=47637273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr2	47637274	.	T	.	.	PASS	END=47637301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr2	47637302	.	G	.	.	PASS	END=47637324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr2	47637325	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:70:60
chr2	47637326	.	G	.	.	PASS	END=47637356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	47637357	.	G	.	.	PASS	END=47637380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	47637381	.	A	.	.	PASS	END=47637472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	47637473	.	G	.	.	PASS	END=47637501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	47637502	.	A	.	.	PASS	END=47637526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr2	47637527	.	C	.	.	PASS	END=47637531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr2	47637532	.	G	.	.	PASS	END=47637542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:69:60
chr2	47637543	.	T	.	.	PASS	END=47637558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr2	47637559	.	G	.	.	PASS	END=47637562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	47639502	.	C	.	.	PASS	END=47639533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr2	47639534	.	A	.	.	PASS	END=47639573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	47639574	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:64:60
chr2	47639575	.	T	.	.	PASS	END=47639622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	47639623	.	A	.	.	PASS	END=47639671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr2	47639672	.	T	.	.	PASS	END=47639700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr2	47639701	.	T	.	.	PASS	END=47639717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	47639718	.	T	.	.	PASS	END=47639731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:59
chr2	47639732	.	T	.	.	PASS	END=47639739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:59
chr2	47639740	.	A	.	.	PASS	END=47639744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:59
chr2	47639745	.	T	.	.	PASS	END=47639750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:59
chr2	47641357	.	A	.	.	PASS	END=47641368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	47641369	.	T	.	.	PASS	END=47641390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	47641391	.	T	.	.	PASS	END=47641501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	47641502	.	T	.	.	PASS	END=47641518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	47641519	.	T	.	.	PASS	END=47641527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	47641528	.	G	.	.	PASS	END=47641539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr2	47641540	.	G	.	.	PASS	END=47641541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:57:60
chr2	47641542	.	C	.	.	PASS	END=47641543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:66:60
chr2	47641544	.	T	.	.	PASS	END=47641547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	47641548	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:69:60
chr2	47641549	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:48:60
chr2	47641550	.	T	.	.	PASS	END=47641551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:51:60
chr2	47641552	.	T	.	.	PASS	END=47641554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr2	47641555	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:36:60
chr2	47641556	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:60:60
chr2	47641557	.	G	.	.	PASS	END=47641558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:33:60
chr2	47641559	.	T	.	.	PASS	END=47641561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:45:60
chr2	47641562	.	A	.	.	PASS	END=47641563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:69:60
chr2	47641564	.	A	.	.	PASS	END=47641585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	47641586	.	A	.	.	PASS	END=47641608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr2	47643384	.	G	.	.	PASS	END=47643408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	47643409	.	T	.	.	PASS	END=47643456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	47643457	.	G	A	1083.63	PASS	BaseQRankSum=1.677;DP=83;Dels=0.00;FS=11.722;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;MQRankSum=1.202;QD=13.06;ReadPosRankSum=0.663;SB=-426.19	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,45:83:99:1114,0,1048:60:99:0.542
chr2	47643458	.	C	.	.	PASS	END=47643487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	47643488	.	G	.	.	PASS	END=47643566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	47643567	.	A	.	.	PASS	END=47643604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	47643605	.	A	.	.	PASS	END=47643614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	47643615	.	T	.	.	PASS	END=47643619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	47656830	.	T	.	.	PASS	END=47656914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr2	47656915	.	G	.	.	PASS	END=47657040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	47657041	.	C	.	.	PASS	END=47657059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr2	47657060	.	A	.	.	PASS	END=47657076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr2	47657077	.	G	.	.	PASS	END=47657131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr2	47672636	.	A	.	.	PASS	END=47672658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	47672659	.	A	.	.	PASS	END=47672736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	47672737	.	C	.	.	PASS	END=47672758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	47672759	.	T	.	.	PASS	END=47672842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	47672843	.	C	.	.	PASS	END=47672847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	47690119	.	T	.	.	PASS	END=47690149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	47690150	.	T	.	.	PASS	END=47690163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	47690164	.	T	.	.	PASS	END=47690194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	47690195	.	A	.	.	PASS	END=47690304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	47690305	.	T	.	.	PASS	END=47690340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	47690341	.	T	.	.	PASS	END=47690344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	47691392	.	C	.	.	LowGQX	END=47691491	GT	./.
chr2	47693746	.	A	.	.	PASS	END=47693767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	47693768	.	T	.	.	PASS	END=47693795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	47693796	.	G	.	.	PASS	END=47693917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	47693918	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:71:75:60
chr2	47693919	.	C	.	.	PASS	END=47693946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	47693947	.	G	.	.	PASS	END=47693958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	47693959	.	G	A	695.95	PASS	BaseQRankSum=2.882;DP=54;Dels=0.00;FS=1.275;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=1.220;QD=12.89;ReadPosRankSum=-1.342;SB=-261.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,26:54:99:726,0,595:60:99:0.481
chr2	47693960	.	T	.	.	PASS	END=47693983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	47693984	.	A	.	.	PASS	END=47693998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr2	47698053	.	T	.	.	PASS	END=47698177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	47698178	.	A	.	.	PASS	END=47698205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	47698206	.	A	.	.	PASS	END=47698252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:83:60
chr2	47702113	.	G	.	.	LowGQX	END=47702115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	47702116	.	T	.	.	LowGQX	END=47702121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	47702122	.	T	.	.	LowGQX	END=47702124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	47702125	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr2	47702126	.	T	.	.	LowGQX	END=47702134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	47702135	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr2	47702136	.	T	.	.	LowGQX	END=47702153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr2	47702154	.	T	.	.	PASS	END=47702162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	47702163	.	G	.	.	PASS	END=47702166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	47702167	.	A	.	.	PASS	END=47702173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr2	47702174	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:48:60
chr2	47702175	.	C	.	.	PASS	END=47702186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr2	47702187	.	C	.	.	PASS	END=47702211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	47702212	.	A	.	.	PASS	END=47702237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	47702238	.	T	.	.	PASS	END=47702256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:91:60
chr2	47702257	.	C	.	.	PASS	END=47702341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	47702342	.	T	.	.	PASS	END=47702372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	47702373	.	T	.	.	PASS	END=47702403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	47702404	.	T	.	.	PASS	END=47702408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	47702409	.	G	.	.	PASS	END=47702410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:60
chr2	47702411	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:48:60
chr2	47702412	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:33:60
chr2	47702413	.	A	.	.	PASS	END=47702417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	47702418	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:39:60
chr2	47702419	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:27:60
chr2	47702420	.	T	.	.	PASS	END=47702423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:60
chr2	47702424	.	T	.	.	PASS	END=47702427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	47702428	.	G	.	.	PASS	END=47702429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:33:60
chr2	47702430	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:48:60
chr2	47702431	.	C	G	4.78	LowGQX;LowQD;SB	BaseQRankSum=-2.324;DP=21;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=20.9890;MQ=60;MQ0=0;MQRankSum=-1.395;QD=0.23;ReadPosRankSum=1.817;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:12,7:21:33.01:33,0,266:60:5:0.368
chr2	47702432	.	T	.	.	PASS	END=47702434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr2	47702435	.	G	.	.	PASS	END=47702436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:30:60
chr2	47702437	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:21:60
chr2	47702438	.	G	.	.	PASS	END=47702442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	47702443	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:9:60
chr2	47702444	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr2	47702445	.	C	.	36.01	LowGQX	DP=15;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:11:14:6.02:60:6
chr2	47702446	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:1:60
chr2	47702447	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:36:60
chr2	47702448	.	T	.	.	PASS	END=47702450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	47702451	.	G	T	224.90	SB	BaseQRankSum=0.890;DP=20;Dels=0.10;FS=0.000;HRun=19;HaplotypeScore=17.2339;MQ=60;MQ0=0;MQRankSum=-0.234;QD=11.24;ReadPosRankSum=-0.234;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:6,12:18:31.74:255,0,32:60:32:0.667
chr2	47702452	.	T	.	.	PASS	END=47702456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr2	47702457	.	T	.	.	PASS	END=47702460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	47703455	.	G	.	.	PASS	END=47703499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	47703500	.	T	C	1014.20	PASS	BaseQRankSum=0.451;DP=76;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=-0.681;QD=13.34;ReadPosRankSum=0.985;SB=-495.55	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,43:76:99:1044,0,891:60:99:0.566
chr2	47703501	.	T	.	.	PASS	END=47703556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	47703557	.	T	.	.	PASS	END=47703618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	47703619	.	T	.	.	PASS	END=47703665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	47703666	.	C	.	.	PASS	END=47703693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	47703694	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:99:60
chr2	47703695	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:70:60
chr2	47703696	.	T	.	.	PASS	END=47703704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr2	47703705	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:60:60
chr2	47703706	.	C	.	.	PASS	END=47703718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	47703719	.	A	.	.	PASS	END=47703730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	47703731	.	C	.	.	PASS	END=47703759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	47703760	.	T	.	.	PASS	END=47703761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr2	47705360	.	A	.	.	PASS	END=47705381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	47705382	.	G	.	.	PASS	END=47705392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	47705393	.	T	.	.	PASS	END=47705432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr2	47705433	.	A	.	.	PASS	END=47705447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr2	47705448	.	T	.	.	PASS	END=47705475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr2	47705476	.	G	.	.	PASS	END=47705485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	47705486	.	A	.	.	PASS	END=47705491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	47705492	.	G	.	.	PASS	END=47705533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	47705534	.	C	.	.	PASS	END=47705625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	47705626	.	A	.	.	PASS	END=47705640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	47705641	.	T	.	.	PASS	END=47705646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	47705647	.	A	.	.	PASS	END=47705672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr2	47705673	.	A	.	.	PASS	END=47705677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr2	47705678	.	T	.	.	PASS	END=47705691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr2	47705692	.	T	.	.	PASS	END=47705702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	47705703	.	A	.	.	PASS	END=47705706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:69:60
chr2	47705707	.	T	.	.	PASS	END=47705709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr2	47707784	.	T	.	.	PASS	END=47707790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr2	47707791	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:57:60
chr2	47707792	.	T	.	.	PASS	END=47707807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	47707808	.	C	.	.	PASS	END=47707912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:87:60
chr2	47707913	.	A	.	.	PASS	END=47707943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	47707944	.	T	.	.	PASS	END=47707970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	47707971	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:36:60
chr2	47707972	.	A	.	.	PASS	END=47707987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr2	47707988	.	A	.	.	PASS	END=47707997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	47707998	.	T	.	.	PASS	END=47708015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	47708016	.	T	.	.	PASS	END=47708020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr2	47708021	.	T	.	.	PASS	END=47708039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	47708040	.	T	.	.	PASS	END=47708043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	47708044	.	T	.	.	PASS	END=47708061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr2	47709867	.	C	.	.	PASS	END=47709902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr2	47709903	.	T	.	.	PASS	END=47709954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	47709955	.	T	.	.	PASS	END=47710056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	47710057	.	A	.	.	PASS	END=47710092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	47710093	.	T	.	.	PASS	END=47710118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr2	47710119	.	T	.	.	PASS	END=47710134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:72:60
chr2	47710135	.	G	.	.	PASS	END=47710139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr2	47739441	.	G	.	.	LowGQX	END=47739573	GT	./.
chr2	47748044	.	G	.	.	LowGQX	END=47748427	GT	./.
chr2	47748428	.	T	.	.	LowGQX	END=47748531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	47748532	.	G	.	.	LowGQX	END=47748649	GT	./.
chr2	47748650	.	C	.	.	LowGQX	END=47748667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47748668	.	G	.	.	LowGQX	END=47748669	GT	./.
chr2	47748670	.	G	.	.	LowGQX	END=47748673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47748674	.	A	.	.	LowGQX	END=47748675	GT	./.
chr2	47748676	.	G	.	.	LowGQX	END=47748713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47748714	.	A	.	.	LowGQX	.	GT	./.
chr2	47748715	.	G	.	.	LowGQX	END=47748725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	47748726	.	T	.	.	LowGQX	.	GT	./.
chr2	47748727	.	G	.	.	LowGQX	END=47748772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	47748773	.	A	.	.	LowGQX	.	GT	./.
chr2	47748774	.	G	.	.	LowGQX	END=47748802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47748803	.	C	.	.	LowGQX	.	GT	./.
chr2	47748804	.	A	.	.	LowGQX	END=47748806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47748807	.	C	.	.	LowGQX	.	GT	./.
chr2	47748808	.	G	.	.	LowGQX	END=47748815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47748816	.	T	.	.	LowGQX	.	GT	./.
chr2	47748817	.	G	.	.	LowGQX	END=47748827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47748828	.	G	.	.	LowGQX	.	GT	./.
chr2	47748829	.	C	.	.	LowGQX	END=47748838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	47748839	.	C	.	.	LowGQX	END=47748949	GT	./.
chr2	47797067	.	A	.	.	LowGQX	END=47797476	GT	./.
chr2	47888081	.	T	.	.	LowGQX	END=47888253	GT	./.
chr2	47905355	.	C	.	.	LowGQX	END=47905424	GT	./.
chr2	47905425	.	G	.	.	LowGQX	END=47905454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48010322	.	G	.	.	PASS	END=48010357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	48010358	.	T	.	.	PASS	END=48010382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	48010383	.	A	.	.	PASS	END=48010388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	48010389	.	C	.	.	PASS	END=48010398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	48010399	.	C	.	.	PASS	END=48010525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	48010526	.	G	.	.	PASS	END=48010541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	48010542	.	C	.	.	PASS	END=48010560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	48010561	.	C	.	.	PASS	END=48010603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	48010604	.	A	.	.	PASS	END=48010636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr2	48010637	.	C	.	.	PASS	END=48010641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr2	48010642	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:48:60
chr2	48010643	.	G	.	.	PASS	END=48010647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr2	48010648	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:60
chr2	48010649	.	G	.	.	PASS	END=48010652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr2	48010653	.	T	.	69.11	PASS	DP=31;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:24:31:39.12:60:39
chr2	48010654	.	C	.	.	PASS	END=48010655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	48010656	.	A	.	.	PASS	END=48010657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:41:60
chr2	48010658	.	G	.	.	PASS	END=48010668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	48010669	.	A	.	.	PASS	END=48010673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	48010674	.	C	.	.	PASS	END=48010680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr2	48010681	.	C	.	.	PASS	END=48010683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr2	48016527	.	G	.	.	LowGQX	END=48016626	GT	./.
chr2	48018015	.	A	.	.	PASS	END=48018019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr2	48018020	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	48018021	.	C	.	.	PASS	END=48018040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	48018041	.	G	.	.	PASS	END=48018048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr2	48018049	.	T	.	.	PASS	END=48018066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr2	48018067	.	T	.	.	PASS	END=48018090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	48018091	.	G	.	.	PASS	END=48018101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr2	48018102	.	G	.	.	PASS	END=48018109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	48018110	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:61:60
chr2	48018111	.	T	.	.	PASS	END=48018133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	48018134	.	T	.	.	PASS	END=48018169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	48018170	.	A	.	.	PASS	END=48018238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	48018239	.	A	.	.	PASS	END=48018260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	48018261	.	A	.	.	PASS	END=48018275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr2	48018276	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:54:60
chr2	48018277	.	T	.	.	PASS	END=48018283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr2	48018284	.	T	.	.	PASS	END=48018293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	48018294	.	T	.	.	PASS	END=48018303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	48022982	.	C	.	.	PASS	END=48023015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:98:60
chr2	48023016	.	A	.	.	PASS	END=48023051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	48023052	.	C	.	.	PASS	END=48023091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	48023092	.	C	.	.	PASS	END=48023185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	48023186	.	A	.	.	PASS	END=48023241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	48023242	.	G	.	.	PASS	END=48023253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:81:60
chr2	48025699	.	T	.	.	PASS	END=48025752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	48025753	.	G	.	.	PASS	END=48025777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	48025778	.	G	.	.	PASS	END=48025809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	48025810	.	G	.	.	PASS	END=48025817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	48025818	.	G	.	.	PASS	END=48025831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	48025832	.	G	.	.	PASS	END=48025895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	48025896	.	T	.	.	PASS	END=48026001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr2	48026002	.	G	.	.	PASS	END=48026062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:273:99:60
chr2	48026063	.	G	.	.	PASS	END=48026210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:313:99:60
chr2	48026211	.	T	.	.	PASS	END=48026271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr2	48026272	.	A	.	.	PASS	END=48026429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr2	48026430	.	C	.	.	PASS	END=48026458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr2	48026459	.	A	.	.	PASS	END=48026547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	48026548	.	A	.	.	PASS	END=48026606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr2	48026607	.	A	.	.	PASS	END=48026642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:319:99:60
chr2	48026643	.	A	.	.	PASS	END=48026685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:439:99:60
chr2	48026686	.	C	.	.	PASS	END=48026850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:493:99:60
chr2	48026851	.	C	.	.	PASS	END=48027041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:406:99:60
chr2	48027042	.	A	.	.	PASS	END=48027163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:329:99:60
chr2	48027164	.	T	.	.	PASS	END=48027262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:438:99:60
chr2	48027263	.	C	.	.	PASS	END=48027418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:491:99:60
chr2	48027419	.	A	.	.	PASS	END=48027454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:373:99:60
chr2	48027455	.	T	.	.	PASS	END=48027525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:288:99:60
chr2	48027526	.	C	.	.	PASS	END=48027593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr2	48027594	.	A	.	.	PASS	END=48027639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr2	48027640	.	A	.	.	PASS	END=48027661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	48027662	.	A	.	.	PASS	END=48027725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	48027726	.	G	.	.	PASS	END=48027934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	48027935	.	A	.	.	PASS	END=48027958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	48027959	.	A	.	.	PASS	END=48027991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	48027992	.	A	.	.	PASS	END=48028010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	48028011	.	C	.	.	PASS	END=48028027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	48028028	.	A	.	.	PASS	END=48028041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	48028042	.	A	.	.	PASS	END=48028079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr2	48028080	.	C	.	.	PASS	END=48028090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr2	48028091	.	T	.	.	PASS	END=48028092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr2	48028093	.	C	.	.	PASS	END=48028114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	48028115	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:54:60
chr2	48028116	.	T	.	.	PASS	END=48028133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr2	48028134	.	A	.	.	PASS	END=48028140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr2	48028141	.	T	.	.	PASS	END=48028164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	48028165	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:42:60
chr2	48028166	.	T	.	.	PASS	END=48028199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	48028200	.	T	.	.	PASS	END=48028202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	48028203	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:72:60
chr2	48028204	.	T	.	.	PASS	END=48028212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr2	48028213	.	G	.	.	PASS	END=48028222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	48028223	.	G	.	.	PASS	END=48028230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	48028231	.	T	.	.	PASS	END=48028233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr2	48028234	.	T	.	.	PASS	END=48028239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	48028240	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	48028241	.	T	.	.	LowGQX	END=48028243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr2	48028244	.	A	.	.	PASS	END=48028256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	48028257	.	G	.	.	LowGQX	END=48028260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr2	48028261	.	T	.	.	PASS	END=48028262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	48028263	.	G	.	.	LowGQX	END=48028264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr2	48028265	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr2	48028266	.	G	.	.	LowGQX	END=48028267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	48028268	.	C	.	.	PASS	END=48028269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	48028270	.	G	.	.	LowGQX	END=48028273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	48028274	.	T	.	.	PASS	END=48028277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	48028278	.	G	.	.	LowGQX	END=48028280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	48028281	.	T	.	.	PASS	END=48028282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	48028283	.	T	.	.	LowGQX	END=48028285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	48028286	.	C	.	.	PASS	END=48028287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	48028288	.	G	.	.	LowGQX	END=48028289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	48028290	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	48028291	.	T	.	.	LowGQX	END=48028292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr2	48028293	.	G	.	.	LowGQX	END=48028295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr2	48028296	.	T	.	.	LowGQX	END=48028298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	48028299	.	G	.	.	LowGQX	END=48028307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr2	48028308	.	C	.	.	LowGQX	END=48028318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr2	48028319	.	T	.	.	LowGQX	END=48028350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	48028351	.	T	.	.	LowGQX	END=48028361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48030508	.	T	.	.	PASS	END=48030514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:61
chr2	48030515	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:39:61
chr2	48030516	.	C	.	.	PASS	END=48030536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr2	48030537	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:30:60
chr2	48030538	.	T	.	.	PASS	END=48030547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	48030548	.	T	.	.	PASS	END=48030564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	48030565	.	T	.	.	PASS	END=48030580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr2	48030581	.	C	.	.	PASS	END=48030600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	48030601	.	G	.	.	PASS	END=48030645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	48030646	.	C	.	.	PASS	END=48030731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	48030732	.	G	.	.	PASS	END=48030772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	48030773	.	T	.	.	PASS	END=48030794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	48030795	.	A	.	.	PASS	END=48030806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr2	48030807	.	T	.	.	PASS	END=48030814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	48030815	.	T	.	.	PASS	END=48030828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	48030829	.	C	.	.	PASS	END=48030836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr2	48030837	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:42:60
chr2	48030838	.	A	.	.	PASS	END=48030857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	48030858	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:42:60
chr2	48030859	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:15:60
chr2	48030860	.	A	.	.	PASS	END=48030875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr2	48031998	.	A	.	.	PASS	END=48032012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr2	48032013	.	C	.	.	PASS	END=48032088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:89:60
chr2	48032089	.	T	.	.	PASS	END=48032101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	48032102	.	G	.	.	PASS	END=48032130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	48032131	.	T	.	.	PASS	END=48032217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	48032706	.	G	.	.	PASS	END=48032740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	48032740	.	ATTT	A	1640.34	PASS	BaseQRankSum=-3.475;DP=81;FS=1.961;HRun=13;HaplotypeScore=159.3414;MQ=60;MQ0=0;MQRankSum=0.633;QD=20.25;ReadPosRankSum=0.335;SB=-630.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,37:81:99:1679,0,1240:60:99:0.521
chr2	48032741	.	T	.	111.23	PASS	DP=83;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:41:41:81.24:60:81
chr2	48032742	.	T	.	129.29	PASS	DP=83;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:42:42:99:60:99
chr2	48032743	.	T	.	135.33	PASS	DP=83;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:44:44:99:60:99
chr2	48032744	.	T	.	.	PASS	END=48032809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	48032810	.	G	.	.	PASS	END=48032875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:79:60
chr2	48032876	.	T	.	.	PASS	END=48032890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	48032891	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:75:60
chr2	48032892	.	A	.	.	PASS	END=48032897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	48033292	.	T	.	.	PASS	END=48033348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	48033349	.	G	.	.	PASS	END=48033435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	48033436	.	C	.	.	PASS	END=48033498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	48033499	.	T	.	.	PASS	END=48033521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	48033522	.	C	.	.	PASS	END=48033677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	48033678	.	A	.	.	PASS	END=48033720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	48033721	.	A	.	.	PASS	END=48033784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	48033785	.	A	.	.	PASS	END=48033841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	48033867	.	T	.	.	PASS	END=48033874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:61
chr2	48033875	.	G	.	147.50	PASS	DP=70;MQ=61;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:53:70:99:61:99
chr2	48033876	.	A	.	.	PASS	END=48033881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:61
chr2	48033882	.	C	.	40.18	LowGQX	DP=78;MQ=61;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:57:78:10.18:61:10
chr2	48033883	.	A	.	.	PASS	END=48033889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:61
chr2	48033890	.	C	.	59.84	PASS	DP=80;MQ=61;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:54:79:29.85:61:30
chr2	48033890	.	CT	C	215.28	PASS	BaseQRankSum=-0.076;DP=80;FS=0.906;HRun=18;HaplotypeScore=503.0627;MQ=61;MQ0=0;MQRankSum=0.379;QD=2.69;ReadPosRankSum=1.310;SB=-74.25	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:45,21:80:99:254,0,593:61:99:0.318
chr2	48033891	.	T	.	144.23	PASS	DP=80;MQ=61;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:53:54:99:61:99
chr2	48033892	.	T	.	.	PASS	END=48034001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	48034002	.	T	.	.	PASS	END=48034050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	48035255	.	A	.	.	LowGQX	END=48035388	GT	./.
chr2	48035466	.	A	.	.	LowGQX	END=48035568	GT	./.
chr2	48036295	.	A	.	.	LowGQX	END=48036407	GT	./.
chr2	48036737	.	A	.	.	LowGQX	END=48036848	GT	./.
chr2	48037453	.	A	.	.	LowGQX	END=48037567	GT	./.
chr2	48040287	.	T	.	.	LowGQX	END=48040518	GT	./.
chr2	48040919	.	A	.	.	LowGQX	END=48041018	GT	./.
chr2	48045910	.	A	.	.	LowGQX	END=48045926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	48045927	.	A	.	.	LowGQX	.	GT	./.
chr2	48045928	.	C	.	.	LowGQX	END=48045958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48045959	.	G	.	.	LowGQX	.	GT	./.
chr2	48045960	.	T	.	.	LowGQX	END=48045965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48045966	.	A	.	.	LowGQX	.	GT	./.
chr2	48045967	.	G	.	.	LowGQX	END=48045972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48045973	.	C	.	.	LowGQX	.	GT	./.
chr2	48045974	.	A	.	.	LowGQX	END=48045976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48045977	.	T	.	.	LowGQX	.	GT	./.
chr2	48045978	.	C	.	.	LowGQX	END=48045985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48045986	.	A	.	.	LowGQX	.	GT	./.
chr2	48045987	.	T	.	.	LowGQX	END=48045995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48045996	.	A	.	.	LowGQX	.	GT	./.
chr2	48045997	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48045998	.	A	.	.	LowGQX	.	GT	./.
chr2	48045999	.	C	.	.	LowGQX	END=48046009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48046093	.	A	.	.	LowGQX	END=48046219	GT	./.
chr2	48047499	.	A	.	.	LowGQX	END=48047598	GT	./.
chr2	48049295	.	T	.	.	LowGQX	END=48049367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48049368	.	T	.	.	LowGQX	.	GT	./.
chr2	48049369	.	T	.	.	LowGQX	END=48049384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48049385	.	T	.	.	LowGQX	.	GT	./.
chr2	48049386	.	C	.	.	LowGQX	END=48049449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48050280	.	A	.	.	LowGQX	END=48050501	GT	./.
chr2	48059486	.	A	.	.	LowGQX	END=48059530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48059531	.	T	.	.	LowGQX	END=48059582	GT	./.
chr2	48059583	.	C	.	.	LowGQX	END=48059584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48059585	.	G	.	.	LowGQX	.	GT	./.
chr2	48059586	.	C	.	.	LowGQX	END=48059594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48059595	.	T	.	.	LowGQX	.	GT	./.
chr2	48059596	.	A	.	.	LowGQX	END=48059612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48059613	.	C	.	.	LowGQX	.	GT	./.
chr2	48059614	.	C	.	.	LowGQX	END=48059619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48059620	.	T	.	.	LowGQX	.	GT	./.
chr2	48059621	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48059622	.	T	.	.	LowGQX	.	GT	./.
chr2	48059623	.	T	.	.	LowGQX	END=48059627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48059709	.	A	.	.	LowGQX	END=48059819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48059906	.	A	.	.	LowGQX	END=48059922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48059923	.	G	.	.	LowGQX	.	GT	./.
chr2	48059924	.	G	.	.	LowGQX	END=48059976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48059977	.	G	.	.	LowGQX	.	GT	./.
chr2	48059978	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48059979	.	T	.	.	LowGQX	.	GT	./.
chr2	48059980	.	G	.	.	LowGQX	END=48059983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48059984	.	A	.	.	LowGQX	END=48060021	GT	./.
chr2	48060101	.	A	.	.	LowGQX	END=48060211	GT	./.
chr2	48061716	.	A	.	.	LowGQX	END=48061728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48061729	.	A	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	48061730	.	T	.	.	LowGQX	END=48061763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48061764	.	A	.	.	LowGQX	END=48061852	GT	./.
chr2	48061919	.	A	.	.	LowGQX	END=48062018	GT	./.
chr2	48062969	.	A	.	.	LowGQX	END=48063115	GT	./.
chr2	48063116	.	A	.	.	LowGQX	END=48063142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48064041	.	T	.	.	LowGQX	END=48064200	GT	./.
chr2	48065996	.	A	.	.	LowGQX	END=48066144	GT	./.
chr2	48066549	.	A	.	.	LowGQX	END=48066648	GT	./.
chr2	48066779	.	A	.	.	LowGQX	END=48066908	GT	./.
chr2	48132556	.	C	.	.	LowGQX	END=48132633	GT	./.
chr2	48132634	.	C	.	.	LowGQX	END=48132727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	48132728	.	C	.	.	LowGQX	.	GT	./.
chr2	48132729	.	T	.	.	LowGQX	END=48132736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	48132737	.	G	.	.	LowGQX	END=48132925	GT	./.
chr2	48573352	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573353	.	A	.	.	LowGQX	.	GT	./.
chr2	48573354	.	A	.	.	LowGQX	END=48573358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573359	.	T	.	.	LowGQX	END=48573361	GT	./.
chr2	48573362	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573363	.	G	.	.	LowGQX	.	GT	./.
chr2	48573364	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573365	.	A	.	.	LowGQX	.	GT	./.
chr2	48573366	.	A	.	.	LowGQX	END=48573368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573369	.	G	.	.	LowGQX	END=48573370	GT	./.
chr2	48573371	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573372	.	A	.	.	LowGQX	.	GT	./.
chr2	48573373	.	T	.	.	LowGQX	END=48573375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573376	.	C	.	.	LowGQX	.	GT	./.
chr2	48573377	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573378	.	C	.	.	LowGQX	.	GT	./.
chr2	48573379	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573380	.	A	.	.	LowGQX	.	GT	./.
chr2	48573381	.	G	.	.	LowGQX	END=48573383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573384	.	A	.	.	LowGQX	END=48573385	GT	./.
chr2	48573386	.	G	.	.	LowGQX	END=48573389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573390	.	G	.	.	LowGQX	.	GT	./.
chr2	48573391	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573392	.	T	.	.	LowGQX	END=48573396	GT	./.
chr2	48573397	.	C	.	.	LowGQX	END=48573398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573399	.	C	.	.	LowGQX	END=48573401	GT	./.
chr2	48573402	.	G	.	.	LowGQX	END=48573404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573405	.	G	.	.	LowGQX	END=48573407	GT	./.
chr2	48573408	.	G	.	.	LowGQX	END=48573409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573410	.	A	.	.	LowGQX	END=48573411	GT	./.
chr2	48573412	.	A	.	.	LowGQX	END=48573416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573417	.	G	.	.	LowGQX	END=48573420	GT	./.
chr2	48573421	.	G	.	.	LowGQX	END=48573424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573425	.	A	.	.	LowGQX	END=48573426	GT	./.
chr2	48573427	.	G	.	.	LowGQX	END=48573428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573429	.	C	.	.	LowGQX	.	GT	./.
chr2	48573430	.	A	.	.	LowGQX	END=48573435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573436	.	A	.	.	LowGQX	END=48573438	GT	./.
chr2	48573439	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573440	.	A	.	.	LowGQX	.	GT	./.
chr2	48573441	.	A	.	.	LowGQX	END=48573442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573443	.	G	.	.	LowGQX	.	GT	./.
chr2	48573444	.	G	.	.	LowGQX	END=48573447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573448	.	G	.	.	LowGQX	.	GT	./.
chr2	48573449	.	C	.	.	LowGQX	END=48573455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573456	.	G	.	.	LowGQX	.	GT	./.
chr2	48573457	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573458	.	A	.	.	LowGQX	.	GT	./.
chr2	48573459	.	G	.	.	LowGQX	END=48573467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573468	.	G	.	.	LowGQX	.	GT	./.
chr2	48573469	.	C	.	.	LowGQX	END=48573472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573473	.	C	.	.	LowGQX	END=48573474	GT	./.
chr2	48573475	.	G	.	.	LowGQX	END=48573483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573484	.	C	.	.	LowGQX	END=48573486	GT	./.
chr2	48573487	.	C	.	.	LowGQX	END=48573493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573494	.	G	.	.	LowGQX	.	GT	./.
chr2	48573495	.	G	.	.	LowGQX	END=48573499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48573500	.	T	.	.	LowGQX	END=48573892	GT	./.
chr2	48586184	.	A	.	.	LowGQX	END=48586288	GT	./.
chr2	48589765	.	T	.	.	LowGQX	END=48589785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48589786	.	T	.	.	LowGQX	.	GT	./.
chr2	48589787	.	C	.	.	LowGQX	END=48589801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	48589802	.	A	.	.	LowGQX	.	GT	./.
chr2	48589803	.	T	.	.	LowGQX	END=48589830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	48589831	.	G	.	.	LowGQX	END=48589833	GT	./.
chr2	48589834	.	C	.	.	LowGQX	END=48589851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	48589852	.	T	.	.	LowGQX	.	GT	./.
chr2	48589853	.	G	.	.	LowGQX	END=48589864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	48600356	.	T	.	.	LowGQX	END=48600568	GT	./.
chr2	48602057	.	A	.	.	LowGQX	END=48602584	GT	./.
chr2	48668012	.	C	.	.	LowGQX	END=48668230	GT	./.
chr2	48678132	.	T	.	.	LowGQX	END=48678231	GT	./.
chr2	48681663	.	A	.	.	LowGQX	END=48681882	GT	./.
chr2	48685103	.	T	.	.	LowGQX	END=48685202	GT	./.
chr2	48685263	.	A	.	.	LowGQX	END=48685368	GT	./.
chr2	48686891	.	A	.	.	LowGQX	END=48687059	GT	./.
chr2	48687214	.	C	.	.	LowGQX	END=48687313	GT	./.
chr2	48688215	.	T	.	.	LowGQX	END=48688374	GT	./.
chr2	48691993	.	A	.	.	LowGQX	END=48692203	GT	./.
chr2	48692630	.	A	.	.	LowGQX	END=48692783	GT	./.
chr2	48698224	.	A	.	.	LowGQX	END=48698329	GT	./.
chr2	48698414	.	C	.	.	LowGQX	END=48698513	GT	./.
chr2	48701820	.	A	.	.	LowGQX	END=48701960	GT	./.
chr2	48706610	.	C	.	.	LowGQX	END=48706622	GT	./.
chr2	48706623	.	T	.	.	LowGQX	END=48706628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48706629	.	A	.	.	LowGQX	.	GT	./.
chr2	48706630	.	G	.	.	LowGQX	END=48706636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48706637	.	A	.	.	LowGQX	.	GT	./.
chr2	48706638	.	G	.	.	LowGQX	END=48706639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48706640	.	A	.	.	LowGQX	.	GT	./.
chr2	48706641	.	G	.	.	LowGQX	END=48706653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48706654	.	C	.	.	LowGQX	.	GT	./.
chr2	48706655	.	C	.	.	LowGQX	END=48706661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48706662	.	T	.	.	LowGQX	.	GT	./.
chr2	48706663	.	G	.	.	LowGQX	END=48706669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48706670	.	C	.	.	LowGQX	.	GT	./.
chr2	48706671	.	A	.	.	LowGQX	END=48706672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48706673	.	A	.	.	LowGQX	END=48706674	GT	./.
chr2	48706675	.	G	.	.	LowGQX	END=48706678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48706679	.	A	.	.	LowGQX	END=48706680	GT	./.
chr2	48706681	.	C	.	.	LowGQX	END=48706694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48706695	.	G	.	.	LowGQX	.	GT	./.
chr2	48706696	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48706697	.	T	.	.	LowGQX	END=48706698	GT	./.
chr2	48706699	.	A	.	.	LowGQX	END=48706700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48706701	.	A	.	.	LowGQX	.	GT	./.
chr2	48706702	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48706703	.	T	.	.	LowGQX	.	GT	./.
chr2	48706704	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48706705	.	T	.	.	LowGQX	END=48706706	GT	./.
chr2	48706707	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48706708	.	T	.	.	LowGQX	.	GT	./.
chr2	48706709	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48707060	.	T	.	.	LowGQX	END=48707073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48707074	.	G	.	.	LowGQX	.	GT	./.
chr2	48707075	.	A	.	.	LowGQX	END=48707088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48707089	.	A	.	.	LowGQX	.	GT	./.
chr2	48707090	.	C	.	.	LowGQX	END=48707092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48707093	.	A	.	.	LowGQX	.	GT	./.
chr2	48707094	.	C	.	.	LowGQX	END=48707099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48707100	.	T	.	.	LowGQX	.	GT	./.
chr2	48707101	.	T	.	.	LowGQX	END=48707118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48707119	.	G	.	.	LowGQX	.	GT	./.
chr2	48707120	.	G	.	.	LowGQX	END=48707124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48707125	.	G	.	.	LowGQX	.	GT	./.
chr2	48707126	.	C	.	.	LowGQX	END=48707132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48707133	.	T	.	.	LowGQX	.	GT	./.
chr2	48707134	.	G	.	.	LowGQX	END=48707136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48707137	.	T	.	.	LowGQX	.	GT	./.
chr2	48707138	.	T	.	.	LowGQX	END=48707145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48707146	.	G	.	.	LowGQX	.	GT	./.
chr2	48707147	.	T	.	.	LowGQX	END=48707148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48707149	.	A	.	.	LowGQX	.	GT	./.
chr2	48707150	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48707151	.	G	.	.	LowGQX	END=48707159	GT	./.
chr2	48713768	.	A	.	.	LowGQX	END=48713899	GT	./.
chr2	48718134	.	T	.	.	LowGQX	END=48718221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48718222	.	A	.	.	LowGQX	END=48718289	GT	./.
chr2	48718290	.	A	.	.	LowGQX	END=48718311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48722816	.	A	.	.	LowGQX	END=48722943	GT	./.
chr2	48725630	.	A	.	.	LowGQX	END=48725876	GT	./.
chr2	48732669	.	T	.	.	LowGQX	END=48732768	GT	./.
chr2	48734406	.	A	.	.	LowGQX	END=48734575	GT	./.
chr2	48737152	.	A	.	.	LowGQX	END=48737254	GT	./.
chr2	48738477	.	A	.	.	LowGQX	END=48738554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48738555	.	A	.	.	LowGQX	END=48738609	GT	./.
chr2	48741762	.	A	.	.	LowGQX	END=48741918	GT	./.
chr2	48756606	.	A	.	.	LowGQX	END=48756765	GT	./.
chr2	48757007	.	C	.	.	LowGQX	END=48757363	GT	./.
chr2	48807771	.	A	.	.	LowGQX	END=48807863	GT	./.
chr2	48807864	.	A	.	.	LowGQX	END=48807975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48807976	.	T	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	48807977	.	T	.	.	LowGQX	END=48808022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48808023	.	C	.	.	LowGQX	END=48809704	GT	./.
chr2	48818790	.	A	.	.	LowGQX	END=48818996	GT	./.
chr2	48822295	.	A	.	.	LowGQX	END=48822454	GT	./.
chr2	48829130	.	G	.	.	LowGQX	END=48829229	GT	./.
chr2	48844974	.	G	.	.	LowGQX	END=48845068	GT	./.
chr2	48845069	.	G	.	.	LowGQX	END=48845073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48847988	.	A	.	.	LowGQX	END=48848093	GT	./.
chr2	48848304	.	A	.	.	LowGQX	END=48848456	GT	./.
chr2	48869519	.	A	.	.	LowGQX	END=48869521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48869522	.	T	.	.	LowGQX	.	GT	./.
chr2	48869523	.	A	.	.	LowGQX	END=48869570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48869571	.	T	.	.	LowGQX	.	GT	./.
chr2	48869572	.	T	.	.	LowGQX	END=48869618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48872165	.	T	.	.	LowGQX	END=48872203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48872204	.	T	.	.	LowGQX	END=48872264	GT	./.
chr2	48873590	.	A	.	.	LowGQX	END=48873984	GT	./.
chr2	48873985	.	A	.	.	LowGQX	END=48874065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48874066	.	A	.	.	LowGQX	.	GT	./.
chr2	48874067	.	C	.	.	LowGQX	END=48874069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48874070	.	G	.	.	LowGQX	.	GT	./.
chr2	48874071	.	C	.	.	LowGQX	END=48874076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48874077	.	A	.	.	LowGQX	.	GT	./.
chr2	48874078	.	C	.	.	LowGQX	END=48874117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48874118	.	A	.	.	LowGQX	.	GT	./.
chr2	48874119	.	T	.	.	LowGQX	END=48874134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	48874135	.	A	.	.	LowGQX	END=48874183	GT	./.
chr2	48896859	.	A	.	.	LowGQX	END=48897123	GT	./.
chr2	48898725	.	T	.	.	LowGQX	END=48898824	GT	./.
chr2	48906472	.	A	.	.	LowGQX	END=48906631	GT	./.
chr2	48914785	.	T	.	.	PASS	END=48914787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	48914788	.	T	.	.	LowGQX	END=48914794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	48914795	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	48914796	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	48914797	.	T	.	.	PASS	END=48914802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	48914803	.	A	.	.	PASS	END=48914808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	48914809	.	T	.	.	PASS	END=48914814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	48914815	.	A	.	.	PASS	END=48914819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr2	48914820	.	G	.	.	PASS	END=48914826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr2	48914827	.	A	.	.	PASS	END=48914834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr2	48914835	.	G	.	.	PASS	END=48914845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr2	48914846	.	G	.	.	PASS	END=48914867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	48914868	.	G	.	.	PASS	END=48914872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	48914873	.	G	.	.	PASS	END=48914898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	48914899	.	C	.	.	PASS	END=48914922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	48914923	.	A	.	.	PASS	END=48915103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	48915104	.	A	.	.	PASS	END=48915141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr2	48915142	.	A	.	.	PASS	END=48915211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:290:99:60
chr2	48915212	.	A	.	.	PASS	END=48915360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:322:99:60
chr2	48915361	.	T	.	.	PASS	END=48915425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:289:99:60
chr2	48915426	.	C	.	.	PASS	END=48915533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:306:99:60
chr2	48915534	.	T	.	.	PASS	END=48915555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr2	48915556	.	G	.	.	PASS	END=48915648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	48915649	.	A	.	.	PASS	END=48915674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	48915675	.	G	.	.	PASS	END=48915739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr2	48915740	.	C	.	.	PASS	END=48915871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr2	48915872	.	T	.	.	PASS	END=48915905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr2	48915906	.	C	.	.	PASS	END=48915925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	48915926	.	A	.	.	PASS	END=48915948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	48915949	.	C	.	.	PASS	END=48915967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	48915968	.	T	.	.	PASS	END=48915981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	48915982	.	A	.	.	PASS	END=48915995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr2	48915996	.	A	.	.	PASS	END=48916014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	48916015	.	T	.	.	PASS	END=48916025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	48916026	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:33:60
chr2	48916027	.	T	.	.	PASS	END=48916039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr2	48921312	.	G	.	.	PASS	END=48921351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	48921352	.	C	.	.	PASS	END=48921368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	48921369	.	T	.	.	PASS	END=48921468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr2	48921469	.	C	.	.	PASS	END=48921494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	48925703	.	C	.	.	PASS	END=48925727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	48925728	.	G	.	.	PASS	END=48925745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	48925746	.	C	T	1618.44	PASS	DP=51;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=3.7877;MQ=60;MQ0=0;QD=31.73;SB=-347.47	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,51:51:99:1651,123,0:60:99:1.000
chr2	48925747	.	T	.	.	PASS	END=48925760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	48925761	.	T	.	.	PASS	END=48925894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:90:60
chr2	48925895	.	A	.	.	PASS	END=48925931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr2	48925932	.	A	.	.	PASS	END=48925940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr2	48925941	.	T	.	.	PASS	END=48925947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr2	48925948	.	T	.	.	PASS	END=48925951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr2	48925952	.	G	.	.	PASS	END=48925959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr2	48925960	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:81:60
chr2	48925961	.	T	.	.	PASS	END=48925962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:54:60
chr2	48925963	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:75:60
chr2	48925964	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:57:60
chr2	48925965	.	T	.	.	PASS	END=48925971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr2	48925972	.	T	.	.	PASS	END=48925977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr2	48925978	.	T	.	.	PASS	END=48925982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr2	48925983	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:57:60
chr2	48925984	.	A	.	.	PASS	END=48925986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr2	48925986	.	AT	A	491.17	PASS	BaseQRankSum=-0.779;DP=30;FS=0.000;HRun=12;HaplotypeScore=82.0167;MQ=60;MQ0=0;MQRankSum=-0.723;QD=16.37;ReadPosRankSum=-1.614;SB=-59.92	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:7,19:30:44.82:530,0,45:60:45:0.731
chr2	48925987	.	T	.	48.01	LowGQX	DP=30;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:7:7:18.01:60:18
chr2	48925988	.	T	.	.	PASS	END=48925989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	48925990	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:78:60
chr2	48936036	.	T	.	.	PASS	END=48936047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	48936048	.	A	.	.	PASS	END=48936080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	48936081	.	A	.	.	PASS	END=48936170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	48936171	.	A	.	.	PASS	END=48936192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	48936193	.	T	.	.	PASS	END=48936199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	48936200	.	T	.	.	PASS	END=48936212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	48941074	.	G	.	.	PASS	END=48941134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	48941135	.	G	.	.	PASS	END=48941189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	48941190	.	T	.	.	PASS	END=48941244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	48948824	.	T	.	.	LowGQX	END=48948923	GT	./.
chr2	48950544	.	G	.	.	PASS	END=48950560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	48950561	.	G	.	.	PASS	END=48950733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	48950734	.	A	.	.	PASS	END=48950801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	48950802	.	T	.	.	PASS	END=48950840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	48950841	.	A	.	.	PASS	END=48950859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	48950860	.	T	.	.	PASS	END=48950872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	48950873	.	T	.	.	PASS	END=48950886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr2	48952764	.	T	.	.	PASS	END=48952862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	48952863	.	C	.	.	PASS	END=48952901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	48952902	.	A	.	.	PASS	END=48952937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr2	48952938	.	T	.	.	PASS	END=48952940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr2	48956241	.	C	.	.	PASS	END=48956246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	48956247	.	G	.	.	PASS	END=48956286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	48956287	.	C	.	.	PASS	END=48956387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	48956388	.	A	.	.	PASS	END=48956412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	48956413	.	T	.	.	PASS	END=48956417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	48958315	.	A	.	.	PASS	END=48958349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	48958350	.	G	.	.	PASS	END=48958374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	48958375	.	A	.	.	PASS	END=48958381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	48958382	.	T	.	.	PASS	END=48958488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	48959999	.	A	.	.	LowGQX	END=48960098	GT	./.
chr2	48982599	.	G	.	.	PASS	END=48982690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	48982691	.	G	.	.	PASS	END=48982713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	48982714	.	G	.	.	PASS	END=48982852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	48982853	.	G	.	.	PASS	END=48982861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	49003387	.	G	.	.	LowGQX	END=49003458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	49003459	.	G	.	.	LowGQX	.	GT	./.
chr2	49003460	.	A	.	.	LowGQX	END=49003464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	49003465	.	C	.	.	LowGQX	.	GT	./.
chr2	49003466	.	A	.	.	LowGQX	END=49003486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	49189821	.	A	.	.	PASS	END=49189840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:69:60
chr2	49189841	.	T	.	.	PASS	END=49189880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr2	49189881	.	G	.	.	PASS	END=49189897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr2	49189898	.	G	.	.	PASS	END=49189903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	49189904	.	G	.	.	PASS	END=49189920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	49189921	.	C	T	2577.33	PASS	BaseQRankSum=1.196;DP=84;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=2.9457;MQ=60;MQ0=0;MQRankSum=-0.124;QD=30.68;ReadPosRankSum=1.485;SB=-350.65	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,83:84:99:2610,172,0:60:99:0.988
chr2	49189922	.	T	.	.	PASS	END=49189941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	49189942	.	G	.	.	PASS	END=49189953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	49189954	.	T	.	.	PASS	END=49189968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	49189969	.	T	.	.	PASS	END=49190025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr2	49190026	.	C	.	.	PASS	END=49190101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr2	49190102	.	A	.	.	PASS	END=49190130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	49190131	.	A	.	.	PASS	END=49190262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	49190263	.	C	.	.	PASS	END=49190367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	49190368	.	A	.	.	PASS	END=49190548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr2	49190549	.	T	.	.	PASS	END=49190670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:283:99:60
chr2	49190671	.	T	.	.	PASS	END=49190764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:347:99:60
chr2	49190765	.	A	.	.	PASS	END=49190879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:361:99:60
chr2	49190880	.	C	.	.	PASS	END=49190928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:271:99:60
chr2	49190929	.	A	.	.	PASS	END=49190976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr2	49190977	.	A	.	.	PASS	END=49191003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	49191004	.	T	.	.	PASS	END=49191040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	49191041	.	C	T	3757.29	PASS	DP=130;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=9.6792;MQ=60;MQ0=0;QD=28.90;SB=-1577.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,128:130:99:3757,292,0:60:99:1.000
chr2	49191042	.	C	.	.	PASS	END=49191048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	49191049	.	A	.	.	PASS	END=49191106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	49191107	.	T	.	.	PASS	END=49191156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	49195786	.	A	.	.	PASS	END=49195805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	49195806	.	T	.	.	PASS	END=49195817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	49195818	.	G	.	.	PASS	END=49195866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr2	49195867	.	C	.	.	PASS	END=49195907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr2	49195908	.	A	.	.	PASS	END=49196040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr2	49196041	.	A	.	.	PASS	END=49196063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr2	49196064	.	C	.	.	PASS	END=49196073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr2	49210000	.	T	.	.	PASS	END=49210019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	49210020	.	C	.	.	PASS	END=49210059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	49210060	.	G	.	.	PASS	END=49210126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	49210127	.	T	.	.	PASS	END=49210176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	49210186	.	T	.	.	PASS	END=49210252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	49210253	.	T	.	.	PASS	END=49210279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	49210280	.	C	.	.	PASS	END=49210356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	49216065	.	C	.	.	PASS	END=49216088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	49216089	.	C	.	.	PASS	END=49216200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	49216201	.	A	.	.	PASS	END=49216226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	49216227	.	A	.	.	PASS	END=49216239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	49216240	.	A	.	.	PASS	END=49216244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr2	49217654	.	C	.	.	PASS	END=49217676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	49217677	.	T	.	.	PASS	END=49217776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	49217777	.	C	.	.	PASS	END=49217824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	49217825	.	A	.	.	PASS	END=49217827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	49241996	.	C	.	.	LowGQX	END=49242005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	49242006	.	A	.	.	LowGQX	END=49242007	GT	./.
chr2	49242008	.	A	.	.	LowGQX	END=49242029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	49242030	.	G	.	.	LowGQX	.	GT	./.
chr2	49242031	.	C	.	.	LowGQX	END=49242032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	49242033	.	C	.	.	LowGQX	END=49242095	GT	./.
chr2	49244577	.	G	.	.	PASS	END=49244586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	49244587	.	A	.	.	PASS	END=49244613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	49244614	.	A	.	.	PASS	END=49244633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr2	49244634	.	T	.	.	PASS	END=49244647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	49244648	.	G	.	.	PASS	END=49244669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	49244670	.	A	.	.	PASS	END=49244753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	49247174	.	A	.	.	PASS	END=49247223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	49247224	.	C	.	.	PASS	END=49247299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	49247300	.	C	.	.	PASS	END=49247339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr2	49247340	.	C	.	.	PASS	END=49247350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr2	49295307	.	C	.	.	PASS	END=49295310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr2	49295311	.	C	.	.	PASS	END=49295332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	49295333	.	A	.	.	PASS	END=49295354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	49295355	.	T	.	.	PASS	END=49295391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	49295392	.	C	.	.	PASS	END=49295472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	49295473	.	T	.	.	PASS	END=49295480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	49381354	.	C	.	.	PASS	END=49381395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	49381396	.	G	.	.	PASS	END=49381482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr2	49381483	.	C	.	.	PASS	END=49381553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr2	49381554	.	C	.	.	PASS	END=49381584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	49381585	.	C	T	2501.86	PASS	BaseQRankSum=1.493;DP=166;Dels=0.00;FS=4.350;HRun=2;HaplotypeScore=7.6281;MQ=60;MQ0=0;MQRankSum=0.029;QD=15.07;ReadPosRankSum=-0.429;SB=-850.72	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:73,93:166:99:2532,0,2046:60:99:0.560
chr2	49381586	.	C	.	.	PASS	END=49381607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr2	49510124	.	C	.	.	LowGQX	END=49510223	GT	./.
chr2	50149031	.	C	.	.	PASS	END=50149039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	50149040	.	T	.	.	PASS	END=50149051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	50149052	.	C	.	.	PASS	END=50149088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	50149089	.	T	.	.	PASS	END=50149138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	50149139	.	G	.	.	PASS	END=50149216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	50149217	.	G	.	.	PASS	END=50149364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr2	50149365	.	C	.	.	PASS	END=50149429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	50149430	.	G	.	.	PASS	END=50149440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	50170791	.	C	.	.	PASS	END=50170880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	50170881	.	C	.	.	PASS	END=50170894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	50170895	.	C	.	.	PASS	END=50170905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	50170906	.	G	.	.	PASS	END=50170914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	50170915	.	G	.	.	PASS	END=50170933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr2	50170934	.	A	.	.	PASS	END=50170959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	50170960	.	T	.	.	PASS	END=50170965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr2	50170966	.	G	.	.	PASS	END=50170971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr2	50170972	.	A	.	.	PASS	END=50170974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	50170975	.	A	.	.	PASS	END=50170978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr2	50170979	.	T	.	.	PASS	END=50170980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr2	50201106	.	C	.	.	LowGQX	END=50201341	GT	./.
chr2	50246344	.	C	.	.	LowGQX	END=50246417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	50246418	.	A	.	.	LowGQX	.	GT	./.
chr2	50246419	.	A	.	.	LowGQX	END=50246442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	50246443	.	T	.	.	LowGQX	.	GT	./.
chr2	50280358	.	T	.	.	PASS	END=50280363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	50280364	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr2	50280365	.	A	.	.	PASS	END=50280383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	50280384	.	G	.	.	PASS	END=50280386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	50280387	.	G	.	.	LowGQX	END=50280389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	50280390	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	50280391	.	T	.	.	LowGQX	END=50280392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr2	50280393	.	A	.	.	PASS	END=50280397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	50280398	.	C	.	.	LowGQX	END=50280399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	50280400	.	C	.	.	PASS	END=50280401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	50280402	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr2	50280403	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr2	50280404	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	50280405	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	50280406	.	C	.	.	LowGQX	END=50280408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr2	50280409	.	C	.	.	PASS	END=50280413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	50280414	.	T	.	.	PASS	END=50280420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	50280421	.	T	.	.	PASS	END=50280437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	50280438	.	T	.	.	PASS	END=50280441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr2	50280442	.	T	.	.	PASS	END=50280455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr2	50280456	.	T	.	.	PASS	END=50280466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr2	50280467	.	G	.	.	PASS	END=50280474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr2	50280475	.	A	.	.	PASS	END=50280480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr2	50280481	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:18:60
chr2	50280482	.	A	.	.	PASS	END=50280488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	50280489	.	A	.	.	PASS	END=50280500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr2	50280501	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:48:60
chr2	50280502	.	T	.	.	PASS	END=50280520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	50280521	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:64:60
chr2	50280522	.	T	.	.	PASS	END=50280550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	50280551	.	T	.	.	PASS	END=50280643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	50280644	.	G	.	.	PASS	END=50280675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:84:60
chr2	50280676	.	T	.	.	PASS	END=50280705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr2	50280706	.	A	.	.	PASS	END=50280760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr2	50280761	.	G	.	.	PASS	END=50280779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:72:60
chr2	50282068	.	T	.	.	PASS	END=50282105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	50282106	.	C	.	.	PASS	END=50282116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	50282117	.	C	.	.	PASS	END=50282219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	50282220	.	T	.	.	PASS	END=50282221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	50318410	.	T	.	.	PASS	END=50318431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	50318432	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:56:60
chr2	50318433	.	T	.	.	PASS	END=50318460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr2	50318461	.	C	.	.	PASS	END=50318511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:84:60
chr2	50318512	.	T	.	.	PASS	END=50318537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	50318538	.	A	.	.	PASS	END=50318604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	50318605	.	T	.	.	PASS	END=50318641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	50318642	.	A	.	.	PASS	END=50318664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr2	50318665	.	T	.	.	PASS	END=50318672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr2	50318673	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:39:60
chr2	50318674	.	T	.	.	PASS	END=50318683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr2	50463876	.	A	.	.	PASS	END=50463934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	50463935	.	G	.	.	PASS	END=50464009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	50464010	.	C	.	.	PASS	END=50464074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	50464075	.	C	.	.	PASS	END=50464092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:91:60
chr2	50464093	.	A	.	.	PASS	END=50464103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr2	50464104	.	C	.	.	PASS	END=50464116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr2	50464117	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:60
chr2	50464118	.	A	.	.	PASS	END=50464122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr2	50464123	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:57:60
chr2	50464124	.	C	.	.	PASS	END=50464151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	50464152	.	T	.	.	PASS	END=50464159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr2	50539841	.	A	.	.	LowGQX	END=50539940	GT	./.
chr2	50573778	.	A	.	.	PASS	END=50573787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr2	50573788	.	G	.	.	PASS	END=50573802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	50573803	.	G	.	.	PASS	END=50573817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr2	50573818	.	C	.	.	PASS	END=50573829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr2	50573830	.	G	.	.	PASS	END=50573885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr2	50573886	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:70:60
chr2	50573887	.	C	.	.	PASS	END=50573936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:87:60
chr2	50573937	.	C	.	.	PASS	END=50573950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	50573951	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr2	50573952	.	C	.	.	PASS	END=50573957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	50573958	.	G	.	.	PASS	END=50573967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr2	50573968	.	G	.	.	PASS	END=50573969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	50573970	.	T	.	.	PASS	END=50573971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:36:60
chr2	50573972	.	A	.	.	PASS	END=50573979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	50573980	.	T	.	.	PASS	END=50573984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	50573985	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr2	50573986	.	A	.	.	LowGQX	END=50573989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	50573990	.	A	.	.	LowGQX	END=50573994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr2	50573995	.	C	.	.	LowGQX	END=50574038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	50574039	.	C	.	10.70	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.05:60:0
chr2	50574040	.	C	.	.	LowGQX	END=50574047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	50574048	.	A	.	.	LowGQX	.	GT	./.
chr2	50574049	.	G	.	.	LowGQX	END=50574112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	50574113	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	50574114	.	G	.	.	LowGQX	END=50574138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	50574245	.	C	.	.	LowGQX	END=50574251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	50574252	.	T	.	.	LowGQX	.	GT	./.
chr2	50574253	.	C	.	.	LowGQX	END=50574254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	50574255	.	T	.	.	LowGQX	END=50574256	GT	./.
chr2	50574257	.	G	.	.	LowGQX	END=50574259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	50574260	.	T	.	.	LowGQX	.	GT	./.
chr2	50574261	.	C	.	.	LowGQX	END=50574266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	50574267	.	T	.	.	LowGQX	.	GT	./.
chr2	50574268	.	G	.	.	LowGQX	END=50574288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	50574289	.	G	.	.	LowGQX	.	GT	./.
chr2	50574290	.	A	.	.	LowGQX	END=50574304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	50574305	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	50574306	.	A	.	.	LowGQX	END=50574339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	50574340	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	50574341	.	C	.	.	LowGQX	END=50574364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	50574365	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	50574366	.	G	.	32.98	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3:60:3
chr2	50574367	.	G	.	.	LowGQX	END=50574368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	50574369	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	50574370	.	G	.	.	LowGQX	END=50574374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	50574375	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	50574376	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	50574377	.	C	.	.	LowGQX	END=50574391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	50574392	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	50574393	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr2	50574394	.	C	.	.	LowGQX	END=50574398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	50692579	.	C	.	.	PASS	END=50692698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	50692699	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:151:99:60
chr2	50693562	.	G	.	.	LowGQX	END=50693574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	50693575	.	T	.	.	LowGQX	.	GT	./.
chr2	50693576	.	T	.	.	LowGQX	END=50693621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	50693622	.	G	.	.	LowGQX	.	GT	./.
chr2	50693623	.	C	.	.	LowGQX	END=50693635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	50693636	.	A	.	.	LowGQX	.	GT	./.
chr2	50693637	.	A	.	.	LowGQX	END=50693650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	50693651	.	G	.	.	LowGQX	END=50693652	GT	./.
chr2	50693653	.	A	.	.	LowGQX	END=50693657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	50693658	.	A	.	.	LowGQX	.	GT	./.
chr2	50693659	.	T	.	.	LowGQX	END=50693661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	50699435	.	C	.	.	PASS	END=50699452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr2	50699453	.	A	.	.	PASS	END=50699476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	50699477	.	T	.	.	PASS	END=50699527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	50699528	.	C	.	.	PASS	END=50699597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	50699598	.	T	.	.	PASS	END=50699605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	50699606	.	T	.	.	PASS	END=50699609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	50723042	.	C	.	.	PASS	END=50723051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr2	50723052	.	C	.	.	PASS	END=50723058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	50723059	.	C	.	.	PASS	END=50723060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:39:60
chr2	50723061	.	T	.	.	PASS	END=50723084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr2	50723085	.	T	.	.	PASS	END=50723100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:60
chr2	50723101	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:54:60
chr2	50723102	.	T	.	.	PASS	END=50723109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr2	50723110	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:64:60
chr2	50723111	.	T	.	.	PASS	END=50723144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr2	50723145	.	T	.	.	PASS	END=50723201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	50723202	.	C	.	.	PASS	END=50723233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr2	50724470	.	C	.	.	PASS	END=50724477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr2	50724478	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:42:60
chr2	50724479	.	T	.	.	PASS	END=50724486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr2	50724487	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:39:60
chr2	50724488	.	C	.	.	PASS	END=50724508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr2	50724509	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:62:60
chr2	50724510	.	C	.	.	PASS	END=50724512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr2	50724513	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:63:60
chr2	50724514	.	T	.	.	PASS	END=50724517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr2	50724518	.	A	.	.	PASS	END=50724540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	50724541	.	A	.	.	PASS	END=50724568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	50724569	.	C	.	.	PASS	END=50724594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	50724595	.	C	.	.	PASS	END=50724638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	50724639	.	G	.	.	PASS	END=50724710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	50724711	.	A	.	.	PASS	END=50724748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	50724749	.	T	.	.	PASS	END=50724787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	50724788	.	T	.	.	PASS	END=50724812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	50724813	.	T	.	.	PASS	END=50724833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	50724834	.	T	.	.	PASS	END=50724848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:83:60
chr2	50724849	.	T	.	.	PASS	END=50724852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr2	50733632	.	C	.	.	PASS	END=50733642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr2	50733643	.	C	.	.	PASS	END=50733688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:78:60
chr2	50733689	.	A	.	.	PASS	END=50733755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	50755686	.	C	.	.	PASS	END=50755708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	50755709	.	A	.	.	PASS	END=50755748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	50755749	.	G	.	.	PASS	END=50755838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	50755839	.	T	.	.	PASS	END=50755845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	50758364	.	C	.	.	PASS	END=50758387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:77:60
chr2	50758388	.	C	.	.	PASS	END=50758400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	50758401	.	G	.	.	PASS	END=50758413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	50758414	.	G	.	.	PASS	END=50758464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	50758465	.	C	.	.	PASS	END=50758546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	50758547	.	T	.	.	PASS	END=50758560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	50758561	.	C	.	.	PASS	END=50758568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	50765390	.	C	.	.	PASS	END=50765393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr2	50765394	.	T	.	.	PASS	END=50765405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr2	50765406	.	T	.	.	PASS	END=50765445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:79:60
chr2	50765446	.	G	.	.	PASS	END=50765455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	50765456	.	T	.	.	PASS	END=50765488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	50765489	.	C	.	.	PASS	END=50765605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	50765606	.	C	.	.	PASS	END=50765634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	50765635	.	A	.	.	PASS	END=50765644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	50765645	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:99:60
chr2	50765646	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr2	50765647	.	G	.	.	PASS	END=50765669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr2	50765670	.	T	.	.	PASS	END=50765698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr2	50765699	.	T	.	.	PASS	END=50765711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	50765712	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:30:60
chr2	50765713	.	C	.	.	PASS	END=50765745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr2	50765746	.	A	.	.	PASS	END=50765747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:57:60
chr2	50765748	.	T	.	.	LowGQX	END=50765749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr2	50765750	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	50765751	.	G	.	.	LowGQX	END=50765758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	50765759	.	T	.	.	LowGQX	END=50765760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	50765761	.	G	.	.	LowGQX	END=50765763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	50765764	.	A	.	.	LowGQX	END=50765766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	50765767	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr2	50765768	.	A	.	.	LowGQX	END=50765770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	50765771	.	G	.	.	LowGQX	END=50765774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	50779724	.	C	.	.	PASS	END=50779738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	50779739	.	C	.	.	PASS	END=50779753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	50779754	.	T	.	.	PASS	END=50779777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	50779778	.	T	.	.	PASS	END=50779807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr2	50779808	.	C	.	.	PASS	END=50779828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr2	50779829	.	A	.	.	PASS	END=50779951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:262:99:60
chr2	50779952	.	G	.	.	PASS	END=50779999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:288:99:60
chr2	50780000	.	T	.	.	PASS	END=50780084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr2	50780085	.	C	.	.	PASS	END=50780102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr2	50780103	.	G	.	.	PASS	END=50780133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	50780134	.	C	.	.	PASS	END=50780163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	50847159	.	C	.	.	PASS	END=50847209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr2	50847210	.	C	.	.	PASS	END=50847245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr2	50847246	.	C	.	.	PASS	END=50847321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr2	50848335	.	A	.	.	PASS	END=50848338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr2	50848339	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:63:60
chr2	50848340	.	T	.	.	PASS	END=50848362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr2	50848363	.	C	.	.	PASS	END=50848434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr2	50850451	.	C	.	.	PASS	END=50850482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	50850483	.	T	.	.	PASS	END=50850519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr2	50850520	.	C	.	.	PASS	END=50850672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr2	50850673	.	T	.	.	PASS	END=50850709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr2	50850710	.	G	.	.	PASS	END=50850732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	50850733	.	T	.	.	PASS	END=50850755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	50858170	.	T	.	.	PASS	END=50858184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	50858185	.	G	.	.	PASS	END=50858293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	50858294	.	A	.	.	PASS	END=50858325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	50883459	.	A	.	.	LowGQX	END=50883558	GT	./.
chr2	50966355	.	A	.	.	LowGQX	END=50966454	GT	./.
chr2	51125688	.	A	.	.	LowGQX	END=51125715	GT	./.
chr2	51125716	.	G	.	.	LowGQX	END=51125787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	51147092	.	T	.	.	LowGQX	END=51147191	GT	./.
chr2	51148963	.	A	.	.	LowGQX	END=51149062	GT	./.
chr2	51149719	.	T	.	.	PASS	END=51149793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	51149794	.	A	.	.	PASS	END=51149832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:82:60
chr2	51149833	.	G	.	.	PASS	END=51149859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	51149860	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:60:60
chr2	51149861	.	A	.	.	PASS	END=51149867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr2	51149868	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:45:60
chr2	51149869	.	A	.	.	PASS	END=51149875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr2	51150498	.	C	.	.	LowGQX	END=51150597	GT	./.
chr2	51150609	.	A	.	.	LowGQX	END=51150708	GT	./.
chr2	51153055	.	A	.	.	PASS	END=51153078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	51153079	.	C	.	.	PASS	END=51153154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	51191067	.	G	.	.	LowGQX	END=51191166	GT	./.
chr2	51206361	.	A	.	.	LowGQX	END=51206460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	51253488	.	T	.	.	PASS	END=51253501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr2	51253502	.	C	.	.	PASS	END=51253511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr2	51253512	.	C	.	.	PASS	END=51253595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr2	51253596	.	C	.	.	PASS	END=51253597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:61:60
chr2	51253598	.	A	.	.	PASS	END=51253607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	51253608	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:69:60
chr2	51253609	.	T	.	.	PASS	END=51253647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr2	51254639	.	C	.	.	PASS	END=51254648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr2	51254649	.	A	.	.	PASS	END=51254662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr2	51254663	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:60
chr2	51254664	.	A	.	.	PASS	END=51254668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr2	51254669	.	G	.	.	PASS	END=51254675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr2	51254676	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:45:60
chr2	51254677	.	G	.	.	PASS	END=51254679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	51254680	.	G	.	.	PASS	END=51254697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr2	51254698	.	G	.	.	PASS	END=51254716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	51254717	.	C	.	.	PASS	END=51254735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	51254736	.	C	.	.	PASS	END=51254786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	51254787	.	G	.	.	PASS	END=51254927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	51254928	.	G	.	.	PASS	END=51255045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	51255046	.	C	.	.	PASS	END=51255075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	51255076	.	G	.	.	PASS	END=51255115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	51255116	.	T	.	.	PASS	END=51255225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:96:60
chr2	51255226	.	G	.	.	PASS	END=51255284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	51255285	.	A	.	.	PASS	END=51255306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr2	51255307	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:51:60
chr2	51255308	.	C	.	.	PASS	END=51255324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr2	51255325	.	G	.	.	PASS	END=51255326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:75:60
chr2	51255327	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:57:60
chr2	51255328	.	G	.	.	PASS	END=51255334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr2	51255335	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:57:60
chr2	51255336	.	C	.	.	PASS	END=51255342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr2	51255343	.	G	.	.	PASS	END=51255356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:54:60
chr2	51255357	.	G	.	.	PASS	END=51255377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	51255378	.	A	.	.	PASS	END=51255384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	51255385	.	C	.	.	PASS	END=51255398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	51255399	.	G	.	.	PASS	END=51255402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	51255403	.	C	.	.	PASS	END=51255404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr2	51255405	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr2	51255406	.	C	.	.	PASS	END=51255407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	51255408	.	C	.	.	LowGQX	END=51255411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	53831962	.	A	.	.	LowGQX	END=53832061	GT	./.
chr2	53897628	.	A	.	.	LowGQX	END=53897754	GT	./.
chr2	53897755	.	G	.	.	LowGQX	END=53897806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	53897807	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	53897808	.	G	.	.	LowGQX	END=53897829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	53921019	.	A	.	.	LowGQX	END=53921130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	53921131	.	T	.	.	LowGQX	.	GT	./.
chr2	53921132	.	C	.	.	LowGQX	END=53921145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	53921146	.	T	.	.	LowGQX	END=53921153	GT	./.
chr2	53927406	.	A	.	.	LowGQX	END=53927671	GT	./.
chr2	53941519	.	A	.	.	LowGQX	END=53941630	GT	./.
chr2	53941631	.	C	.	.	LowGQX	END=53941720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	53943701	.	A	.	.	LowGQX	END=53943749	GT	./.
chr2	53943750	.	G	.	.	LowGQX	END=53943882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	53955847	.	A	.	.	LowGQX	END=53955986	GT	./.
chr2	53956593	.	A	.	.	LowGQX	END=53956709	GT	./.
chr2	53977918	.	A	.	.	LowGQX	END=53978080	GT	./.
chr2	53992512	.	A	.	.	LowGQX	END=53992513	GT	./.
chr2	53992514	.	C	.	.	LowGQX	END=53992520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	53992521	.	A	.	.	LowGQX	END=53992522	GT	./.
chr2	53992523	.	T	.	.	LowGQX	END=53992533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	53992534	.	A	.	.	LowGQX	END=53992535	GT	./.
chr2	53992536	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	53992537	.	C	.	.	LowGQX	.	GT	./.
chr2	53992538	.	A	.	.	LowGQX	END=53992543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	53992544	.	C	.	.	LowGQX	.	GT	./.
chr2	53992545	.	A	.	.	LowGQX	END=53992546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	53992547	.	A	.	.	LowGQX	.	GT	./.
chr2	53992548	.	G	.	.	LowGQX	END=53992551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	53992552	.	T	.	.	LowGQX	.	GT	./.
chr2	53992553	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	53992554	.	A	.	.	LowGQX	.	GT	./.
chr2	53992555	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	53992556	.	A	.	.	LowGQX	END=53992722	GT	./.
chr2	53995022	.	A	.	.	LowGQX	END=53995160	GT	./.
chr2	53998952	.	T	.	.	LowGQX	END=53999111	GT	./.
chr2	54001277	.	A	.	.	LowGQX	END=54001664	GT	./.
chr2	54014346	.	G	.	.	LowGQX	END=54014395	GT	./.
chr2	54014396	.	G	.	.	LowGQX	END=54014417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54014418	.	T	.	.	LowGQX	.	GT	./.
chr2	54014419	.	C	.	.	LowGQX	END=54014511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54021480	.	A	.	.	LowGQX	END=54021639	GT	./.
chr2	54023008	.	A	.	.	LowGQX	END=54023160	GT	./.
chr2	54024641	.	A	.	.	LowGQX	END=54024740	GT	./.
chr2	54024851	.	T	.	.	LowGQX	END=54024950	GT	./.
chr2	54026152	.	T	.	.	LowGQX	END=54026251	GT	./.
chr2	54028532	.	A	.	.	LowGQX	END=54028759	GT	./.
chr2	54028848	.	A	.	.	LowGQX	.	GT	./.
chr2	54028849	.	G	.	.	LowGQX	END=54028922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54028923	.	A	.	.	LowGQX	.	GT	./.
chr2	54028924	.	G	.	.	LowGQX	END=54028949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54028950	.	C	.	.	LowGQX	.	GT	./.
chr2	54028951	.	T	.	.	LowGQX	END=54028960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54028961	.	T	.	.	LowGQX	.	GT	./.
chr2	54028962	.	T	.	.	LowGQX	END=54028964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54028965	.	A	.	.	LowGQX	.	GT	./.
chr2	54028966	.	G	.	.	LowGQX	END=54028976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54028977	.	G	.	.	LowGQX	.	GT	./.
chr2	54028978	.	A	.	.	LowGQX	END=54028981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54035434	.	A	.	.	LowGQX	END=54035623	GT	./.
chr2	54036279	.	A	.	.	LowGQX	END=54036430	GT	./.
chr2	54040084	.	A	.	.	LowGQX	END=54040137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54040138	.	A	.	.	LowGQX	END=54040253	GT	./.
chr2	54041669	.	C	.	.	LowGQX	END=54041691	GT	./.
chr2	54041692	.	T	.	.	LowGQX	END=54041768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54041925	.	A	.	.	LowGQX	END=54041982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	54041983	.	G	T	47.39	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=23.69;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:79,6,0:60:6:1.000
chr2	54041984	.	C	.	.	LowGQX	END=54042012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54042013	.	T	.	.	LowGQX	END=54042084	GT	./.
chr2	54045021	.	T	.	.	LowGQX	END=54045120	GT	./.
chr2	54080269	.	C	.	.	LowGQX	END=54080453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54080454	.	T	.	.	LowGQX	END=54081148	GT	./.
chr2	54081149	.	G	.	.	LowGQX	END=54081287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54081288	.	G	.	.	LowGQX	END=54081289	GT	./.
chr2	54081290	.	C	.	.	LowGQX	END=54081316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54081317	.	A	.	.	LowGQX	.	GT	./.
chr2	54081318	.	C	.	.	LowGQX	END=54081319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54081320	.	T	.	.	LowGQX	END=54081321	GT	./.
chr2	54081322	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54081323	.	G	.	.	LowGQX	.	GT	./.
chr2	54081324	.	A	.	.	LowGQX	END=54081331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54081332	.	G	.	.	LowGQX	.	GT	./.
chr2	54081333	.	G	.	.	LowGQX	END=54081334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54081335	.	G	.	.	LowGQX	.	GT	./.
chr2	54081336	.	G	.	.	LowGQX	END=54081345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54081346	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54081347	.	T	.	.	LowGQX	END=54081365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54081366	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54081367	.	G	.	.	LowGQX	END=54081381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54081382	.	G	.	.	LowGQX	.	GT	./.
chr2	54081383	.	T	.	.	LowGQX	END=54081411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54081412	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	54081413	.	T	.	.	LowGQX	END=54081414	GT	./.
chr2	54081415	.	C	.	.	LowGQX	END=54081431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54081432	.	G	.	.	LowGQX	.	GT	./.
chr2	54081433	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54081434	.	G	.	.	LowGQX	.	GT	./.
chr2	54081435	.	A	.	.	LowGQX	END=54081448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54081449	.	C	.	.	LowGQX	END=54081450	GT	./.
chr2	54081451	.	A	.	.	LowGQX	END=54081455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54081456	.	C	.	.	LowGQX	.	GT	./.
chr2	54081457	.	A	.	.	LowGQX	END=54081463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54081464	.	G	.	.	LowGQX	END=54081465	GT	./.
chr2	54081466	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54081467	.	G	.	.	LowGQX	.	GT	./.
chr2	54081468	.	G	.	.	LowGQX	END=54081473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54081474	.	G	.	.	LowGQX	.	GT	./.
chr2	54081475	.	G	.	.	LowGQX	END=54081482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54081483	.	T	.	.	LowGQX	END=54081850	GT	./.
chr2	54081851	.	A	.	.	LowGQX	END=54081895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54086964	.	C	.	.	LowGQX	END=54086986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54086987	.	C	A	3.07	LowGQX;LowQD;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=1.53;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:30,0,33:60:3:0.500
chr2	54086988	.	C	.	.	LowGQX	END=54087065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54093224	.	T	.	.	LowGQX	END=54093362	GT	./.
chr2	54093882	.	A	.	.	LowGQX	END=54094019	GT	./.
chr2	54096501	.	C	.	.	LowGQX	END=54096677	GT	./.
chr2	54101474	.	A	.	.	LowGQX	END=54101663	GT	./.
chr2	54102762	.	A	.	.	LowGQX	END=54102894	GT	./.
chr2	54112820	.	A	.	.	LowGQX	END=54112919	GT	./.
chr2	54114394	.	A	.	.	LowGQX	END=54114606	GT	./.
chr2	54114993	.	A	.	.	LowGQX	END=54115128	GT	./.
chr2	54115854	.	T	.	.	LowGQX	END=54115953	GT	./.
chr2	54117189	.	T	.	.	LowGQX	END=54117299	GT	./.
chr2	54117300	.	G	.	.	LowGQX	END=54117331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	54117332	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr2	54117333	.	A	.	.	LowGQX	END=54117347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	54119943	.	A	.	.	LowGQX	END=54120099	GT	./.
chr2	54120739	.	T	.	.	LowGQX	END=54120938	GT	./.
chr2	54122129	.	A	.	.	LowGQX	END=54122228	GT	./.
chr2	54122718	.	A	.	.	LowGQX	END=54122729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54122730	.	T	.	.	LowGQX	.	GT	./.
chr2	54122731	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54122732	.	T	.	.	LowGQX	END=54122733	GT	./.
chr2	54122734	.	G	.	.	LowGQX	END=54122738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54122739	.	C	.	.	LowGQX	END=54122740	GT	./.
chr2	54122741	.	C	.	.	LowGQX	END=54122769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54122770	.	C	.	.	LowGQX	.	GT	./.
chr2	54122771	.	T	.	.	LowGQX	END=54122772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54122773	.	C	.	.	LowGQX	END=54122774	GT	./.
chr2	54122775	.	A	.	.	LowGQX	END=54122812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54122813	.	T	.	.	LowGQX	.	GT	./.
chr2	54122814	.	G	.	.	LowGQX	END=54122857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54122858	.	G	T	3.07	LowGQX;LowQD;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=1.53;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:30,0,33:60:3:0.500
chr2	54122859	.	G	.	.	LowGQX	END=54122875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54123932	.	A	.	.	LowGQX	END=54124031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54125005	.	A	.	.	LowGQX	END=54125138	GT	./.
chr2	54125415	.	T	.	.	LowGQX	END=54125456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54125457	.	C	.	.	LowGQX	END=54125514	GT	./.
chr2	54127016	.	A	.	.	LowGQX	END=54127156	GT	./.
chr2	54128485	.	A	.	.	LowGQX	END=54128698	GT	./.
chr2	54131160	.	A	.	.	LowGQX	END=54131295	GT	./.
chr2	54133733	.	A	.	.	LowGQX	END=54133832	GT	./.
chr2	54133925	.	A	.	.	LowGQX	END=54134024	GT	./.
chr2	54135455	.	A	.	.	LowGQX	END=54135557	GT	./.
chr2	54135625	.	A	.	.	LowGQX	END=54135626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54135627	.	C	.	.	LowGQX	.	GT	./.
chr2	54135628	.	T	.	.	LowGQX	END=54135631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54135632	.	A	.	.	LowGQX	.	GT	./.
chr2	54135633	.	A	.	.	LowGQX	END=54135635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54135636	.	G	.	.	LowGQX	.	GT	./.
chr2	54135637	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54135638	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	54135639	.	A	.	.	LowGQX	.	GT	./.
chr2	54135640	.	A	.	.	LowGQX	END=54135646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54135647	.	C	.	.	LowGQX	.	GT	./.
chr2	54135648	.	T	.	.	LowGQX	END=54135665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54135666	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54135667	.	A	.	.	LowGQX	END=54135672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54135673	.	T	.	.	LowGQX	.	GT	./.
chr2	54135674	.	A	.	.	LowGQX	END=54135675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54135676	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54135677	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54135678	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54135679	.	C	.	.	LowGQX	END=54135680	GT	./.
chr2	54135681	.	T	.	.	LowGQX	END=54135687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54135688	.	T	.	.	LowGQX	.	GT	./.
chr2	54135689	.	A	.	.	LowGQX	END=54135691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54135692	.	A	.	.	LowGQX	.	GT	./.
chr2	54135693	.	A	.	.	LowGQX	END=54135722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54135723	.	G	.	.	LowGQX	.	GT	./.
chr2	54135724	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54135900	.	T	.	.	LowGQX	END=54135999	GT	./.
chr2	54137130	.	T	.	.	LowGQX	END=54137289	GT	./.
chr2	54144355	.	T	.	.	LowGQX	END=54144454	GT	./.
chr2	54146226	.	A	.	.	LowGQX	END=54146385	GT	./.
chr2	54147328	.	A	.	.	LowGQX	END=54147489	GT	./.
chr2	54147974	.	T	.	.	LowGQX	END=54148303	GT	./.
chr2	54149582	.	A	.	.	LowGQX	END=54149737	GT	./.
chr2	54150171	.	G	.	.	LowGQX	END=54150178	GT	./.
chr2	54150179	.	G	.	.	LowGQX	END=54150270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54150456	.	A	.	.	LowGQX	END=54150558	GT	./.
chr2	54152674	.	A	.	.	LowGQX	END=54152828	GT	./.
chr2	54153079	.	G	.	.	LowGQX	END=54153178	GT	./.
chr2	54154526	.	C	.	.	LowGQX	END=54154625	GT	./.
chr2	54155252	.	A	.	.	LowGQX	END=54155442	GT	./.
chr2	54158970	.	A	.	.	LowGQX	END=54159239	GT	./.
chr2	54159802	.	C	.	.	LowGQX	END=54159807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54159808	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	54159809	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54159810	.	A	.	.	LowGQX	.	GT	./.
chr2	54159811	.	G	.	.	LowGQX	END=54159901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54161740	.	A	.	.	LowGQX	END=54161866	GT	./.
chr2	54163212	.	A	.	.	LowGQX	END=54163311	GT	./.
chr2	54163883	.	G	.	.	LowGQX	END=54163890	GT	./.
chr2	54163891	.	G	.	.	LowGQX	END=54163982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54164526	.	A	.	.	LowGQX	END=54164715	GT	./.
chr2	54167066	.	G	.	.	LowGQX	END=54167165	GT	./.
chr2	54175556	.	A	.	.	LowGQX	END=54175676	GT	./.
chr2	54176278	.	A	.	.	LowGQX	END=54176420	GT	./.
chr2	54197609	.	G	.	.	LowGQX	END=54197988	GT	./.
chr2	54342711	.	T	.	.	LowGQX	END=54342895	GT	./.
chr2	54362498	.	T	.	.	LowGQX	END=54362587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54362588	.	A	.	.	LowGQX	END=54362648	GT	./.
chr2	54365774	.	A	.	.	LowGQX	END=54365887	GT	./.
chr2	54368982	.	T	.	.	LowGQX	END=54369081	GT	./.
chr2	54482054	.	G	.	.	LowGQX	END=54482078	GT	./.
chr2	54482079	.	G	.	.	LowGQX	END=54482178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54482179	.	T	.	.	LowGQX	.	GT	./.
chr2	54482180	.	T	.	.	LowGQX	END=54482229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54482230	.	C	.	.	LowGQX	END=54482274	GT	./.
chr2	54482275	.	G	.	.	LowGQX	END=54482282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54482283	.	G	.	.	LowGQX	END=54482298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	54482299	.	C	.	.	LowGQX	END=54482428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	54482429	.	T	.	.	LowGQX	END=54482443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	54482444	.	A	.	.	LowGQX	END=54482512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54482513	.	T	.	.	LowGQX	.	GT	./.
chr2	54482514	.	G	.	.	LowGQX	END=54482686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54482687	.	T	.	.	LowGQX	END=54483018	GT	./.
chr2	54483019	.	C	.	.	LowGQX	END=54483054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54483055	.	A	.	.	LowGQX	.	GT	./.
chr2	54483056	.	C	.	.	LowGQX	END=54483060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54483061	.	A	.	.	LowGQX	.	GT	./.
chr2	54483062	.	T	.	.	LowGQX	END=54483067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54483068	.	A	.	.	LowGQX	.	GT	./.
chr2	54483069	.	A	.	.	LowGQX	END=54483077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54483078	.	A	.	.	LowGQX	.	GT	./.
chr2	54483079	.	A	.	.	LowGQX	END=54483142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54483143	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54483144	.	A	.	.	LowGQX	END=54483157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54483158	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54483159	.	A	.	.	LowGQX	END=54483182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54483183	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54483184	.	T	.	.	LowGQX	END=54483265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54483266	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54483267	.	G	.	.	LowGQX	END=54483290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54494397	.	T	.	.	LowGQX	END=54494496	GT	./.
chr2	54531823	.	A	.	.	LowGQX	END=54531941	GT	./.
chr2	54557275	.	A	.	.	LowGQX	END=54557374	GT	./.
chr2	54558076	.	C	.	.	LowGQX	END=54558175	GT	./.
chr2	54561953	.	G	.	.	LowGQX	END=54562115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54562116	.	T	.	.	LowGQX	END=54562161	GT	./.
chr2	54570856	.	G	.	.	LowGQX	END=54570904	GT	./.
chr2	54570905	.	C	.	.	LowGQX	END=54571010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54586095	.	G	.	.	LowGQX	END=54586163	GT	./.
chr2	54586164	.	C	.	.	LowGQX	END=54586195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54586196	.	G	.	.	LowGQX	.	GT	./.
chr2	54586197	.	C	.	.	LowGQX	END=54586206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54586207	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	54586208	.	A	.	.	LowGQX	END=54586209	GT	./.
chr2	54586210	.	A	.	.	LowGQX	END=54586220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54586221	.	T	.	.	LowGQX	.	GT	./.
chr2	54586222	.	A	.	.	LowGQX	END=54586225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54586226	.	A	.	.	LowGQX	.	GT	./.
chr2	54586227	.	G	.	.	LowGQX	END=54586238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54586239	.	A	.	.	LowGQX	.	GT	./.
chr2	54586240	.	C	.	.	LowGQX	END=54586264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54587339	.	G	.	.	LowGQX	END=54587699	GT	./.
chr2	54608982	.	G	.	.	LowGQX	END=54609110	GT	./.
chr2	54753554	.	A	.	.	LowGQX	END=54753624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54753625	.	C	.	.	LowGQX	END=54753705	GT	./.
chr2	54756483	.	A	.	.	LowGQX	END=54756506	GT	./.
chr2	54756507	.	G	.	.	LowGQX	END=54756541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54756542	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	54756543	.	G	.	.	LowGQX	END=54756855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54756856	.	A	.	.	LowGQX	.	GT	./.
chr2	54756857	.	C	.	.	LowGQX	END=54756875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54785914	.	T	.	.	LowGQX	END=54786026	GT	./.
chr2	54826227	.	A	.	.	LowGQX	END=54826319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54826320	.	T	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	54826321	.	G	.	.	LowGQX	END=54826382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54839296	.	A	.	.	LowGQX	END=54839473	GT	./.
chr2	54843340	.	T	.	.	LowGQX	END=54843348	GT	./.
chr2	54843349	.	G	.	.	LowGQX	END=54843439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54844736	.	C	.	.	LowGQX	END=54844835	GT	./.
chr2	54845213	.	A	.	.	LowGQX	END=54845332	GT	./.
chr2	54848535	.	A	.	.	LowGQX	END=54848651	GT	./.
chr2	54849435	.	A	.	.	LowGQX	END=54849436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	54849437	.	G	.	4.69	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.01:60:0
chr2	54849438	.	T	.	.	LowGQX	END=54849626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54850564	.	T	.	.	PASS	END=54850599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	54850600	.	T	.	.	PASS	END=54850705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	54850706	.	G	.	.	PASS	END=54850735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	54851918	.	T	.	.	LowGQX	END=54852101	GT	./.
chr2	54853067	.	A	.	.	LowGQX	END=54853154	GT	./.
chr2	54853155	.	G	.	.	LowGQX	END=54853328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54853329	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	54853330	.	C	.	.	LowGQX	END=54853353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54853354	.	T	.	.	LowGQX	END=54853373	GT	./.
chr2	54855232	.	A	.	.	LowGQX	END=54855335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54855336	.	C	.	.	LowGQX	END=54855389	GT	./.
chr2	54856068	.	A	.	.	LowGQX	END=54856075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54856076	.	A	.	.	LowGQX	.	GT	./.
chr2	54856077	.	G	.	.	LowGQX	END=54856098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54856099	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54856100	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54856101	.	A	.	.	LowGQX	.	GT	./.
chr2	54856102	.	G	.	.	LowGQX	END=54856167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54856168	.	C	.	.	LowGQX	END=54856397	GT	./.
chr2	54856398	.	C	.	.	LowGQX	END=54856433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856434	.	C	.	.	LowGQX	.	GT	./.
chr2	54856435	.	A	.	.	LowGQX	END=54856459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856460	.	A	.	.	LowGQX	.	GT	./.
chr2	54856461	.	G	.	.	LowGQX	END=54856474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856475	.	T	.	.	LowGQX	.	GT	./.
chr2	54856476	.	T	.	.	LowGQX	END=54856482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856483	.	A	.	.	LowGQX	.	GT	./.
chr2	54856484	.	A	.	.	LowGQX	END=54856488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856489	.	C	.	.	LowGQX	.	GT	./.
chr2	54856490	.	T	.	.	LowGQX	END=54856534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856535	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54856536	.	C	.	.	LowGQX	END=54856556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856557	.	C	.	.	LowGQX	.	GT	./.
chr2	54856558	.	A	.	.	LowGQX	END=54856565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856566	.	G	.	.	LowGQX	.	GT	./.
chr2	54856567	.	A	.	.	LowGQX	END=54856570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856571	.	T	.	.	LowGQX	.	GT	./.
chr2	54856572	.	C	.	.	LowGQX	END=54856607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856608	.	A	.	.	LowGQX	.	GT	./.
chr2	54856609	.	C	.	.	LowGQX	END=54856618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856619	.	T	.	.	LowGQX	.	GT	./.
chr2	54856620	.	C	.	.	LowGQX	END=54856659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856660	.	A	.	.	LowGQX	END=54856832	GT	./.
chr2	54856833	.	G	.	.	LowGQX	END=54856835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856836	.	C	.	.	LowGQX	END=54856837	GT	./.
chr2	54856838	.	G	.	.	LowGQX	END=54856855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856856	.	A	.	.	LowGQX	.	GT	./.
chr2	54856857	.	G	.	.	LowGQX	END=54856867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856868	.	A	.	.	LowGQX	.	GT	./.
chr2	54856869	.	C	.	.	LowGQX	END=54856873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856874	.	A	.	.	LowGQX	.	GT	./.
chr2	54856875	.	G	.	.	LowGQX	END=54856893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856894	.	A	.	.	LowGQX	.	GT	./.
chr2	54856895	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856896	.	G	.	.	LowGQX	END=54856898	GT	./.
chr2	54856899	.	G	.	.	LowGQX	END=54856901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856902	.	C	.	.	LowGQX	.	GT	./.
chr2	54856903	.	C	.	.	LowGQX	END=54856904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856905	.	A	.	.	LowGQX	.	GT	./.
chr2	54856906	.	G	.	.	LowGQX	END=54856908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856909	.	A	.	.	LowGQX	END=54856910	GT	./.
chr2	54856911	.	G	.	.	LowGQX	END=54856915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856916	.	A	.	.	LowGQX	.	GT	./.
chr2	54856917	.	G	.	.	LowGQX	END=54856920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856921	.	C	.	.	LowGQX	.	GT	./.
chr2	54856922	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856923	.	G	.	.	LowGQX	.	GT	./.
chr2	54856924	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856925	.	A	.	.	LowGQX	.	GT	./.
chr2	54856926	.	G	.	.	LowGQX	END=54856928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856929	.	C	.	.	LowGQX	END=54856930	GT	./.
chr2	54856931	.	T	.	.	LowGQX	END=54856933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856934	.	A	.	.	LowGQX	.	GT	./.
chr2	54856935	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54856936	.	C	.	.	LowGQX	END=54856940	GT	./.
chr2	54856941	.	G	.	.	LowGQX	END=54856942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54857027	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54857028	.	G	.	.	LowGQX	.	GT	./.
chr2	54857029	.	A	.	.	LowGQX	END=54857042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54857043	.	A	.	.	LowGQX	.	GT	./.
chr2	54857044	.	A	.	.	LowGQX	END=54857057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54857058	.	A	.	.	LowGQX	.	GT	./.
chr2	54857059	.	C	.	.	LowGQX	END=54857060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54857061	.	A	.	.	LowGQX	.	GT	./.
chr2	54857062	.	G	.	.	LowGQX	END=54857072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54857073	.	T	.	.	LowGQX	.	GT	./.
chr2	54857074	.	T	.	.	LowGQX	END=54857077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54857078	.	G	.	.	LowGQX	.	GT	./.
chr2	54857079	.	T	.	.	LowGQX	END=54857093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54857094	.	C	.	.	LowGQX	.	GT	./.
chr2	54857095	.	A	.	.	LowGQX	END=54857102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54857103	.	T	.	.	LowGQX	.	GT	./.
chr2	54857104	.	G	.	.	LowGQX	END=54857131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54857132	.	G	.	.	LowGQX	.	GT	./.
chr2	54857133	.	A	.	.	LowGQX	END=54857136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54857137	.	C	.	.	LowGQX	END=54857168	GT	./.
chr2	54857990	.	A	.	.	LowGQX	END=54858750	GT	./.
chr2	54859701	.	A	.	.	LowGQX	END=54859821	GT	./.
chr2	54859822	.	G	.	.	LowGQX	END=54859855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54859856	.	A	.	.	LowGQX	.	GT	./.
chr2	54859857	.	A	.	.	LowGQX	END=54859907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54864846	.	A	.	.	LowGQX	END=54864906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54864907	.	G	.	.	LowGQX	END=54864945	GT	./.
chr2	54870118	.	A	.	.	LowGQX	END=54870192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54870193	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	54870194	.	T	.	.	LowGQX	END=54870201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54870202	.	T	.	.	LowGQX	.	GT	./.
chr2	54870203	.	G	.	.	LowGQX	END=54870209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54870210	.	C	.	.	LowGQX	END=54870268	GT	./.
chr2	54871458	.	A	.	.	LowGQX	END=54871725	GT	./.
chr2	54872364	.	A	.	.	LowGQX	END=54872374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54872375	.	A	.	.	LowGQX	END=54872592	GT	./.
chr2	54873060	.	C	.	.	LowGQX	END=54873068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54873069	.	G	.	.	LowGQX	END=54873070	GT	./.
chr2	54873071	.	G	.	.	LowGQX	END=54873081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54873082	.	G	.	.	LowGQX	.	GT	./.
chr2	54873083	.	A	.	.	LowGQX	END=54873084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54873085	.	G	.	.	LowGQX	.	GT	./.
chr2	54873086	.	C	.	.	LowGQX	END=54873128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54873129	.	T	.	.	LowGQX	END=54873130	GT	./.
chr2	54873131	.	C	.	.	LowGQX	END=54873141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54873142	.	A	.	.	LowGQX	END=54873159	GT	./.
chr2	54873329	.	A	.	.	LowGQX	END=54873413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54873414	.	C	.	.	LowGQX	END=54873415	GT	./.
chr2	54873416	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54873417	.	C	.	.	LowGQX	.	GT	./.
chr2	54873418	.	C	.	.	LowGQX	END=54873438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54873439	.	C	.	.	LowGQX	END=54873464	GT	./.
chr2	54873465	.	G	.	.	LowGQX	END=54873505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54873506	.	G	.	.	LowGQX	.	GT	./.
chr2	54873507	.	G	.	.	LowGQX	END=54873614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54874266	.	A	.	.	LowGQX	END=54874270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54874271	.	G	.	.	LowGQX	.	GT	./.
chr2	54874272	.	A	.	.	LowGQX	END=54874330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54874331	.	T	.	.	LowGQX	END=54874400	GT	./.
chr2	54876121	.	A	.	.	LowGQX	END=54876192	GT	./.
chr2	54876193	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876194	.	G	.	.	LowGQX	END=54876199	GT	./.
chr2	54876200	.	G	.	.	LowGQX	END=54876205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876206	.	T	.	.	LowGQX	END=54876210	GT	./.
chr2	54876211	.	G	.	.	LowGQX	END=54876215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876216	.	A	.	.	LowGQX	.	GT	./.
chr2	54876217	.	C	.	.	LowGQX	END=54876219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876220	.	A	.	.	LowGQX	.	GT	./.
chr2	54876221	.	G	.	.	LowGQX	END=54876222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876223	.	T	.	.	LowGQX	.	GT	./.
chr2	54876224	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876225	.	A	.	.	LowGQX	END=54876227	GT	./.
chr2	54876228	.	C	.	.	LowGQX	END=54876229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876230	.	A	.	.	LowGQX	.	GT	./.
chr2	54876231	.	G	.	.	LowGQX	END=54876239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876240	.	G	.	.	LowGQX	.	GT	./.
chr2	54876241	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876242	.	A	.	.	LowGQX	.	GT	./.
chr2	54876243	.	G	.	.	LowGQX	END=54876244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876245	.	T	.	.	LowGQX	END=54876247	GT	./.
chr2	54876248	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876249	.	C	.	.	LowGQX	.	GT	./.
chr2	54876250	.	G	.	.	LowGQX	END=54876252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876253	.	C	.	.	LowGQX	.	GT	./.
chr2	54876254	.	T	.	.	LowGQX	END=54876260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876261	.	G	.	.	LowGQX	END=54876264	GT	./.
chr2	54876265	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876266	.	T	.	.	LowGQX	.	GT	./.
chr2	54876267	.	C	.	.	LowGQX	END=54876268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876269	.	C	.	.	LowGQX	END=54876270	GT	./.
chr2	54876271	.	G	.	.	LowGQX	END=54876273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876274	.	A	.	.	LowGQX	.	GT	./.
chr2	54876275	.	G	.	.	LowGQX	END=54876276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876277	.	G	.	.	LowGQX	.	GT	./.
chr2	54876278	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876279	.	G	.	.	LowGQX	.	GT	./.
chr2	54876280	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876281	.	T	.	.	LowGQX	END=54876282	GT	./.
chr2	54876283	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876284	.	T	.	.	LowGQX	.	GT	./.
chr2	54876285	.	C	.	.	LowGQX	END=54876294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876295	.	C	.	.	LowGQX	.	GT	./.
chr2	54876296	.	A	.	.	LowGQX	END=54876297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876298	.	G	.	.	LowGQX	.	GT	./.
chr2	54876299	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876300	.	A	.	.	LowGQX	.	GT	./.
chr2	54876301	.	C	.	.	LowGQX	END=54876304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876305	.	G	.	.	LowGQX	.	GT	./.
chr2	54876306	.	A	.	.	LowGQX	END=54876315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876316	.	G	.	.	LowGQX	.	GT	./.
chr2	54876317	.	A	.	.	LowGQX	END=54876320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876321	.	T	.	.	LowGQX	END=54876322	GT	./.
chr2	54876323	.	T	.	.	LowGQX	END=54876326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876327	.	G	.	.	LowGQX	.	GT	./.
chr2	54876328	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876329	.	C	.	.	LowGQX	.	GT	./.
chr2	54876750	.	A	.	.	LowGQX	END=54876812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876813	.	T	.	.	LowGQX	.	GT	./.
chr2	54876814	.	G	.	.	LowGQX	END=54876837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876838	.	T	.	.	LowGQX	.	GT	./.
chr2	54876839	.	G	.	.	LowGQX	END=54876868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54876869	.	G	.	.	LowGQX	END=54876970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	54876971	.	C	.	.	LowGQX	END=54877071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54877072	.	C	.	.	LowGQX	END=54877123	GT	./.
chr2	54877124	.	C	.	.	LowGQX	END=54877128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54880724	.	C	.	.	LowGQX	END=54880786	GT	./.
chr2	54880787	.	C	.	.	LowGQX	END=54880934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54880935	.	C	.	.	LowGQX	END=54880993	GT	./.
chr2	54882205	.	A	.	.	LowGQX	END=54882347	GT	./.
chr2	54883044	.	C	.	.	LowGQX	END=54883132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54883133	.	T	.	.	LowGQX	END=54883143	GT	./.
chr2	54884971	.	A	.	.	LowGQX	END=54885185	GT	./.
chr2	54886289	.	A	.	.	LowGQX	END=54886405	GT	./.
chr2	54887071	.	A	.	.	LowGQX	END=54887225	GT	./.
chr2	54891588	.	A	.	.	LowGQX	END=54891597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54891598	.	A	.	.	LowGQX	END=54891599	GT	./.
chr2	54891600	.	C	.	.	LowGQX	END=54891607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54891608	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54891609	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr2	54891610	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54891611	.	A	.	.	LowGQX	.	GT	./.
chr2	54891612	.	G	.	.	LowGQX	END=54891614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54891615	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54891616	.	A	.	.	LowGQX	END=54891617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54891618	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54891619	.	G	.	.	LowGQX	END=54891621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54891622	.	C	.	.	LowGQX	.	GT	./.
chr2	54891623	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54891624	.	A	.	.	LowGQX	.	GT	./.
chr2	54891625	.	C	.	.	LowGQX	END=54891630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54891631	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54891632	.	A	.	.	LowGQX	.	GT	./.
chr2	54891633	.	C	.	.	LowGQX	END=54891635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54891636	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54891637	.	A	.	.	LowGQX	END=54891651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54891652	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54891653	.	A	.	.	LowGQX	END=54891654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54891655	.	A	.	.	LowGQX	.	GT	./.
chr2	54891656	.	G	.	.	LowGQX	END=54891657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54891658	.	G	.	.	LowGQX	.	GT	./.
chr2	54891659	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54891660	.	C	.	.	LowGQX	.	GT	./.
chr2	54891661	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54891662	.	A	.	5.68	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.01:60:0
chr2	54891663	.	G	.	.	LowGQX	END=54891664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54891665	.	C	.	.	LowGQX	.	GT	./.
chr2	54891666	.	C	.	.	LowGQX	END=54891667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	54891668	.	A	C	7.08	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=3.54;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,1:2:3.01:36,3,0:60:3:0.500
chr2	54891669	.	T	.	.	LowGQX	.	GT	./.
chr2	54891670	.	C	.	.	LowGQX	END=54891676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54891677	.	C	.	.	LowGQX	END=54891830	GT	./.
chr2	54893050	.	A	.	.	LowGQX	END=54893172	GT	./.
chr2	54893173	.	G	.	.	LowGQX	END=54893174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54893175	.	C	.	.	LowGQX	.	GT	./.
chr2	54893176	.	T	.	.	LowGQX	END=54893178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54893179	.	G	.	.	LowGQX	.	GT	./.
chr2	54893180	.	A	.	.	LowGQX	END=54893183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54893184	.	G	.	.	LowGQX	.	GT	./.
chr2	54893185	.	G	.	.	LowGQX	END=54893188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54893189	.	T	.	.	LowGQX	END=54893190	GT	./.
chr2	54893191	.	G	.	.	LowGQX	END=54893192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54893193	.	T	.	.	LowGQX	.	GT	./.
chr2	54893194	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54893195	.	A	.	.	LowGQX	.	GT	./.
chr2	54893196	.	C	.	.	LowGQX	END=54893211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54893212	.	G	.	.	LowGQX	END=54893213	GT	./.
chr2	54893214	.	A	.	.	LowGQX	END=54893225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54893226	.	G	.	.	LowGQX	.	GT	./.
chr2	54893227	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	54894713	.	T	.	.	LowGQX	END=54894812	GT	./.
chr2	54895486	.	A	.	.	LowGQX	END=54895708	GT	./.
chr2	54952188	.	G	.	.	LowGQX	END=54952276	GT	./.
chr2	54952277	.	A	.	.	LowGQX	END=54952342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	54952343	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	54952344	.	C	.	.	LowGQX	END=54952395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	55040368	.	G	.	.	LowGQX	END=55040445	GT	./.
chr2	55040446	.	C	.	.	LowGQX	END=55040557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	55043923	.	G	.	.	LowGQX	END=55044022	GT	./.
chr2	55047515	.	T	.	.	LowGQX	END=55047614	GT	./.
chr2	55054702	.	G	.	.	LowGQX	END=55054888	GT	./.
chr2	55056478	.	G	.	.	LowGQX	END=55056614	GT	./.
chr2	55071183	.	G	.	.	LowGQX	END=55071210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55071211	.	A	.	.	LowGQX	.	GT	./.
chr2	55071212	.	A	.	.	LowGQX	END=55071279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55071280	.	A	.	.	LowGQX	.	GT	./.
chr2	55071281	.	G	.	.	LowGQX	END=55071374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55071375	.	C	.	.	LowGQX	END=55071385	GT	./.
chr2	55074622	.	G	.	.	LowGQX	END=55074634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55074635	.	G	.	.	LowGQX	.	GT	./.
chr2	55074636	.	G	.	.	LowGQX	END=55074646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55074647	.	C	.	.	LowGQX	.	GT	./.
chr2	55074648	.	T	.	.	LowGQX	END=55074730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55074731	.	G	.	.	LowGQX	END=55074760	GT	./.
chr2	55077098	.	G	.	.	LowGQX	END=55077355	GT	./.
chr2	55080779	.	G	.	.	LowGQX	END=55080992	GT	./.
chr2	55086640	.	T	.	.	LowGQX	END=55086838	GT	./.
chr2	55090869	.	G	.	.	LowGQX	END=55090903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	55090904	.	G	.	.	LowGQX	.	GT	./.
chr2	55090905	.	G	.	.	LowGQX	END=55090992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55090993	.	T	.	.	LowGQX	END=55091026	GT	./.
chr2	55093902	.	G	.	.	LowGQX	END=55094021	GT	./.
chr2	55096317	.	G	.	.	LowGQX	END=55096477	GT	./.
chr2	55096478	.	G	.	.	LowGQX	END=55096504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55098636	.	G	.	.	LowGQX	END=55098742	GT	./.
chr2	55106681	.	C	.	.	LowGQX	END=55106780	GT	./.
chr2	55118190	.	G	.	.	LowGQX	END=55118291	GT	./.
chr2	55119590	.	G	.	.	LowGQX	END=55119793	GT	./.
chr2	55122051	.	G	.	.	LowGQX	END=55122143	GT	./.
chr2	55122144	.	A	.	.	LowGQX	END=55122163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55122409	.	G	.	.	LowGQX	END=55122537	GT	./.
chr2	55126777	.	G	.	.	LowGQX	END=55126919	GT	./.
chr2	55130180	.	G	.	.	LowGQX	END=55130333	GT	./.
chr2	55130507	.	G	.	.	LowGQX	END=55130639	GT	./.
chr2	55138085	.	T	.	.	LowGQX	END=55138184	GT	./.
chr2	55143895	.	G	.	.	LowGQX	END=55144072	GT	./.
chr2	55155413	.	C	.	.	LowGQX	END=55155416	GT	./.
chr2	55155417	.	G	.	.	LowGQX	END=55155575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55155576	.	A	.	.	LowGQX	END=55155651	GT	./.
chr2	55155761	.	G	.	.	LowGQX	END=55155888	GT	./.
chr2	55176008	.	C	.	.	LowGQX	END=55176107	GT	./.
chr2	55177786	.	G	.	.	LowGQX	END=55177916	GT	./.
chr2	55179730	.	G	.	.	LowGQX	END=55179772	GT	./.
chr2	55179773	.	G	.	.	LowGQX	END=55179829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55181119	.	G	.	.	LowGQX	END=55181293	GT	./.
chr2	55184926	.	G	.	.	LowGQX	END=55185135	GT	./.
chr2	55186240	.	G	.	.	LowGQX	END=55186398	GT	./.
chr2	55187355	.	G	.	.	LowGQX	END=55187461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55187462	.	C	.	.	LowGQX	.	GT	./.
chr2	55187463	.	G	.	.	LowGQX	END=55187470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55189658	.	G	.	.	LowGQX	END=55189758	GT	./.
chr2	55189759	.	T	.	.	LowGQX	END=55189782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55189783	.	C	.	.	LowGQX	END=55189786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr2	55189787	.	G	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr2	55189788	.	G	.	.	LowGQX	END=55189811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr2	55189812	.	G	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr2	55189813	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr2	55189814	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr2	55189815	.	G	.	.	LowGQX	END=55189824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr2	55189825	.	G	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr2	55189826	.	G	.	.	LowGQX	END=55189827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr2	55189828	.	T	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr2	55189829	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr2	55189830	.	T	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr2	55189831	.	G	.	.	LowGQX	END=55189847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr2	55191121	.	G	.	.	LowGQX	END=55191294	GT	./.
chr2	55191706	.	G	.	.	LowGQX	END=55191724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55191725	.	A	.	.	LowGQX	.	GT	./.
chr2	55191726	.	T	.	.	LowGQX	END=55191759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55191760	.	A	.	.	LowGQX	.	GT	./.
chr2	55191761	.	C	.	.	LowGQX	END=55191791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55191792	.	A	.	.	LowGQX	.	GT	./.
chr2	55191793	.	A	.	.	LowGQX	END=55191828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55191829	.	T	.	.	LowGQX	.	GT	./.
chr2	55191830	.	C	.	.	LowGQX	END=55191835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55191836	.	G	.	.	LowGQX	END=55191850	GT	./.
chr2	55191851	.	G	.	.	LowGQX	END=55191869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55194135	.	G	.	.	LowGQX	END=55194239	GT	./.
chr2	55195263	.	G	.	.	LowGQX	END=55195303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55195304	.	G	.	.	LowGQX	.	GT	./.
chr2	55195305	.	C	.	.	LowGQX	END=55195328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55195329	.	C	.	.	LowGQX	END=55195344	GT	./.
chr2	55195345	.	T	.	.	LowGQX	END=55195346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55195347	.	G	.	.	LowGQX	END=55195348	GT	./.
chr2	55195349	.	C	.	.	LowGQX	END=55195357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55195358	.	G	.	.	LowGQX	.	GT	./.
chr2	55195359	.	T	.	.	LowGQX	END=55195361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55195362	.	C	.	.	LowGQX	.	GT	./.
chr2	55195363	.	A	.	.	LowGQX	END=55195373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55195374	.	T	.	.	LowGQX	.	GT	./.
chr2	55195375	.	T	.	.	LowGQX	END=55195376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55195377	.	G	.	.	LowGQX	END=55195378	GT	./.
chr2	55195379	.	C	.	.	LowGQX	END=55195388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55195389	.	T	.	.	LowGQX	.	GT	./.
chr2	55195390	.	C	.	.	LowGQX	END=55195400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55195401	.	C	.	.	LowGQX	.	GT	./.
chr2	55195402	.	A	.	.	LowGQX	END=55195417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55195803	.	G	.	.	LowGQX	END=55195904	GT	./.
chr2	55197169	.	C	.	.	LowGQX	END=55197268	GT	./.
chr2	55200264	.	G	.	.	LowGQX	.	GT	./.
chr2	55200265	.	A	.	.	LowGQX	END=55200273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55200274	.	T	.	.	LowGQX	.	GT	./.
chr2	55200275	.	A	.	.	LowGQX	END=55200288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55200289	.	T	.	.	LowGQX	END=55200290	GT	./.
chr2	55200291	.	T	.	.	LowGQX	END=55200363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55200679	.	T	.	.	LowGQX	END=55200778	GT	./.
chr2	55200931	.	A	.	.	LowGQX	END=55201030	GT	./.
chr2	55201816	.	G	.	.	LowGQX	END=55201915	GT	./.
chr2	55209649	.	A	.	.	LowGQX	END=55209791	GT	./.
chr2	55214625	.	A	.	.	LowGQX	END=55214636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214637	.	G	.	.	LowGQX	.	GT	./.
chr2	55214638	.	G	.	.	LowGQX	END=55214644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214645	.	T	.	.	LowGQX	END=55214646	GT	./.
chr2	55214647	.	T	.	.	LowGQX	END=55214648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214649	.	A	.	.	LowGQX	.	GT	./.
chr2	55214650	.	T	.	.	LowGQX	END=55214651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214652	.	T	.	.	LowGQX	.	GT	./.
chr2	55214653	.	C	.	.	LowGQX	END=55214657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214658	.	T	.	.	LowGQX	.	GT	./.
chr2	55214659	.	A	.	.	LowGQX	END=55214660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214661	.	C	.	.	LowGQX	.	GT	./.
chr2	55214662	.	T	.	.	LowGQX	END=55214663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214664	.	G	.	.	LowGQX	.	GT	./.
chr2	55214665	.	G	.	.	LowGQX	END=55214666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214667	.	T	.	.	LowGQX	.	GT	./.
chr2	55214668	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214669	.	A	.	.	LowGQX	.	GT	./.
chr2	55214670	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214671	.	A	.	.	LowGQX	.	GT	./.
chr2	55214672	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214673	.	C	.	.	LowGQX	.	GT	./.
chr2	55214674	.	C	.	.	LowGQX	END=55214675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214676	.	T	.	.	LowGQX	.	GT	./.
chr2	55214677	.	G	.	.	LowGQX	END=55214695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214696	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	55214697	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	55214698	.	C	.	.	LowGQX	END=55214708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	55214709	.	G	.	.	LowGQX	END=55214710	GT	./.
chr2	55214711	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214712	.	C	.	.	LowGQX	.	GT	./.
chr2	55214713	.	C	.	.	LowGQX	END=55214714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214715	.	A	.	.	LowGQX	.	GT	./.
chr2	55214716	.	G	.	.	LowGQX	END=55214736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214737	.	C	.	.	LowGQX	.	GT	./.
chr2	55214738	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214739	.	C	.	.	LowGQX	.	GT	./.
chr2	55214740	.	A	.	.	LowGQX	END=55214743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214744	.	C	.	.	LowGQX	.	GT	./.
chr2	55214745	.	T	.	.	LowGQX	END=55214749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214750	.	A	.	.	LowGQX	END=55214751	GT	./.
chr2	55214752	.	T	.	.	LowGQX	END=55214759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214760	.	A	.	.	LowGQX	.	GT	./.
chr2	55214761	.	A	.	.	LowGQX	END=55214764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214765	.	A	.	.	LowGQX	.	GT	./.
chr2	55214766	.	G	.	.	LowGQX	END=55214770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214771	.	A	.	.	LowGQX	.	GT	./.
chr2	55214772	.	A	.	.	LowGQX	END=55214773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214774	.	A	.	.	LowGQX	.	GT	./.
chr2	55214775	.	G	.	.	LowGQX	END=55214776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214777	.	C	.	.	LowGQX	.	GT	./.
chr2	55214778	.	T	.	.	LowGQX	END=55214782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214783	.	C	.	.	LowGQX	.	GT	./.
chr2	55214784	.	C	.	.	LowGQX	END=55214789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214790	.	C	.	.	LowGQX	.	GT	./.
chr2	55214791	.	C	.	.	LowGQX	END=55214792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214793	.	C	.	.	LowGQX	END=55214794	GT	./.
chr2	55214795	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214796	.	C	.	.	LowGQX	.	GT	./.
chr2	55214797	.	A	.	.	LowGQX	END=55214811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214812	.	T	.	.	LowGQX	.	GT	./.
chr2	55214813	.	C	.	.	LowGQX	END=55214815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214816	.	C	.	.	LowGQX	.	GT	./.
chr2	55214817	.	A	.	.	LowGQX	END=55214820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214821	.	C	.	.	LowGQX	.	GT	./.
chr2	55214822	.	A	.	.	LowGQX	END=55214824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214825	.	A	.	.	LowGQX	.	GT	./.
chr2	55214826	.	G	.	.	LowGQX	END=55214832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55214833	.	A	.	.	LowGQX	END=55214836	GT	./.
chr2	55237190	.	A	.	.	LowGQX	END=55237289	GT	./.
chr2	55252220	.	A	.	.	LowGQX	END=55254623	GT	./.
chr2	55255279	.	A	.	.	LowGQX	END=55255378	GT	./.
chr2	55276686	.	G	.	.	LowGQX	END=55276725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	55276726	.	C	.	.	LowGQX	END=55276785	GT	./.
chr2	55276874	.	C	.	.	LowGQX	END=55277438	GT	./.
chr2	55402924	.	A	.	.	LowGQX	END=55402947	GT	./.
chr2	55402948	.	A	.	.	LowGQX	END=55403004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55403005	.	A	.	.	LowGQX	.	GT	./.
chr2	55403006	.	T	.	.	LowGQX	END=55403124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55404736	.	A	.	.	LowGQX	END=55404919	GT	./.
chr2	55407644	.	A	.	.	LowGQX	END=55407773	GT	./.
chr2	55407774	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55407775	.	A	.	.	LowGQX	.	GT	./.
chr2	55407776	.	C	.	.	LowGQX	END=55407799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55407800	.	C	.	.	LowGQX	.	GT	./.
chr2	55407801	.	T	.	.	LowGQX	END=55407850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55408704	.	A	.	.	LowGQX	END=55408847	GT	./.
chr2	55408848	.	A	.	.	LowGQX	END=55408903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55433404	.	A	.	.	LowGQX	END=55433563	GT	./.
chr2	55435755	.	T	.	.	LowGQX	END=55435854	GT	./.
chr2	55436538	.	A	.	.	LowGQX	END=55436654	GT	./.
chr2	55436764	.	A	.	.	LowGQX	END=55436969	GT	./.
chr2	55439807	.	A	.	.	LowGQX	END=55439962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55439963	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	55439964	.	T	.	.	LowGQX	END=55439965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55439966	.	A	.	.	LowGQX	END=55439986	GT	./.
chr2	55444945	.	A	.	.	LowGQX	END=55444965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55444966	.	T	.	.	LowGQX	END=55445043	GT	./.
chr2	55445044	.	T	.	.	LowGQX	END=55445126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55445127	.	T	.	.	LowGQX	.	GT	./.
chr2	55445128	.	C	.	.	LowGQX	END=55445136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55449349	.	T	.	.	LowGQX	END=55449549	GT	./.
chr2	55459895	.	C	.	.	PASS	END=55460017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	55460018	.	G	.	.	PASS	END=55460031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	55460032	.	A	.	.	PASS	END=55460045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	55460046	.	A	.	.	PASS	END=55460059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	55460436	.	T	.	.	PASS	END=55460470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	55460471	.	C	.	.	PASS	END=55460521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	55460522	.	A	.	.	PASS	END=55460560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	55460561	.	G	.	.	PASS	END=55460604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	55461204	.	C	.	.	PASS	END=55461327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	55461328	.	C	.	.	PASS	END=55461353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	55461354	.	A	.	.	PASS	END=55461373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	55461374	.	A	.	.	PASS	END=55461391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	55461916	.	T	.	.	PASS	END=55462003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	55462004	.	G	.	.	PASS	END=55462047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	55462048	.	A	.	.	PASS	END=55462072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	55462073	.	A	.	.	PASS	END=55462099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	55462100	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:75:60
chr2	55462101	.	G	.	.	PASS	END=55462135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:59
chr2	55462136	.	G	.	.	PASS	END=55462149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:59
chr2	55462513	.	A	.	.	PASS	END=55462535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr2	55462536	.	A	.	.	PASS	END=55462542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr2	55462543	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:72:60
chr2	55462544	.	A	.	.	PASS	END=55462547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr2	55462548	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:63:60
chr2	55462549	.	G	.	.	PASS	END=55462560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr2	55462561	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:66:60
chr2	55462562	.	A	.	.	PASS	END=55462606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	55462607	.	C	.	.	PASS	END=55462757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:82:60
chr2	55462758	.	T	.	.	PASS	END=55462764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	55463782	.	T	.	.	LowGQX	END=55463958	GT	./.
chr2	55464422	.	A	.	.	LowGQX	END=55464566	GT	./.
chr2	55467145	.	A	.	.	LowGQX	END=55467313	GT	./.
chr2	55470074	.	A	.	.	LowGQX	END=55470218	GT	./.
chr2	55470550	.	A	.	.	LowGQX	END=55470575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55470576	.	T	.	.	LowGQX	.	GT	./.
chr2	55470577	.	T	.	.	LowGQX	END=55470584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55470585	.	T	.	.	LowGQX	.	GT	./.
chr2	55470586	.	T	.	.	LowGQX	END=55470671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55470672	.	C	.	.	LowGQX	END=55470806	GT	./.
chr2	55471163	.	A	.	.	LowGQX	END=55471371	GT	./.
chr2	55473471	.	A	.	.	LowGQX	END=55473599	GT	./.
chr2	55476529	.	A	.	.	LowGQX	END=55476672	GT	./.
chr2	55479611	.	A	.	.	LowGQX	END=55479791	GT	./.
chr2	55481175	.	A	.	.	LowGQX	END=55481339	GT	./.
chr2	55481788	.	A	.	.	LowGQX	END=55481963	GT	./.
chr2	55489400	.	G	.	.	LowGQX	END=55489507	GT	./.
chr2	55489508	.	T	.	.	LowGQX	END=55489565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55490774	.	A	.	.	LowGQX	END=55490996	GT	./.
chr2	55518830	.	T	.	.	LowGQX	END=55518929	GT	./.
chr2	55522200	.	T	.	.	LowGQX	END=55522211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522212	.	A	.	.	LowGQX	END=55522782	GT	./.
chr2	55522783	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522784	.	A	.	.	LowGQX	.	GT	./.
chr2	55522785	.	T	.	.	LowGQX	END=55522802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522803	.	C	.	.	LowGQX	.	GT	./.
chr2	55522804	.	T	.	.	LowGQX	END=55522813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522814	.	A	.	.	LowGQX	.	GT	./.
chr2	55522815	.	A	.	.	LowGQX	END=55522818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522819	.	T	.	.	LowGQX	.	GT	./.
chr2	55522820	.	G	.	.	LowGQX	END=55522821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522822	.	A	.	.	LowGQX	.	GT	./.
chr2	55522823	.	T	.	.	LowGQX	END=55522833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522834	.	C	.	.	LowGQX	.	GT	./.
chr2	55522835	.	G	.	.	LowGQX	END=55522857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522858	.	A	.	.	LowGQX	.	GT	./.
chr2	55522859	.	T	.	.	LowGQX	END=55522860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522861	.	A	.	.	LowGQX	END=55522862	GT	./.
chr2	55522863	.	G	.	.	LowGQX	END=55522867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522868	.	T	.	.	LowGQX	.	GT	./.
chr2	55522869	.	T	.	.	LowGQX	END=55522870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522871	.	C	.	.	LowGQX	END=55522872	GT	./.
chr2	55522873	.	C	.	.	LowGQX	END=55522874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522875	.	A	.	.	LowGQX	.	GT	./.
chr2	55522876	.	G	.	.	LowGQX	END=55522877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522878	.	T	.	.	LowGQX	END=55522880	GT	./.
chr2	55522881	.	A	.	.	LowGQX	END=55522883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522884	.	T	.	.	LowGQX	.	GT	./.
chr2	55522885	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522886	.	C	.	.	LowGQX	.	GT	./.
chr2	55522887	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522888	.	T	.	.	LowGQX	END=55522889	GT	./.
chr2	55522890	.	A	.	.	LowGQX	END=55522893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522894	.	T	.	.	LowGQX	.	GT	./.
chr2	55522895	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522896	.	A	.	.	LowGQX	.	GT	./.
chr2	55522897	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522898	.	T	.	.	LowGQX	END=55522899	GT	./.
chr2	55522900	.	T	.	.	LowGQX	END=55522901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522902	.	T	.	.	LowGQX	END=55522903	GT	./.
chr2	55522904	.	T	.	.	LowGQX	END=55522905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522906	.	G	.	.	LowGQX	END=55522907	GT	./.
chr2	55522908	.	T	.	.	LowGQX	END=55522911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522912	.	C	.	.	LowGQX	.	GT	./.
chr2	55522913	.	G	.	.	LowGQX	END=55522915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522916	.	A	.	.	LowGQX	END=55522917	GT	./.
chr2	55522918	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522919	.	G	.	.	LowGQX	.	GT	./.
chr2	55522920	.	A	.	.	LowGQX	END=55522922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522923	.	A	.	.	LowGQX	END=55522924	GT	./.
chr2	55522925	.	A	.	.	LowGQX	END=55522927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522928	.	C	.	.	LowGQX	END=55522929	GT	./.
chr2	55522930	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55522931	.	T	.	.	LowGQX	END=55523194	GT	./.
chr2	55523392	.	A	.	.	LowGQX	.	GT	./.
chr2	55523393	.	C	.	.	LowGQX	END=55523451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55523452	.	C	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr2	55523453	.	T	.	.	LowGQX	END=55523477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	55523478	.	G	.	.	LowGQX	.	GT	./.
chr2	55523479	.	T	.	.	LowGQX	END=55523484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	55523485	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	55523486	.	G	.	.	LowGQX	END=55523492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	55523493	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	55523494	.	A	.	.	LowGQX	END=55523496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	55523497	.	G	.	.	LowGQX	.	GT	./.
chr2	55523498	.	T	.	.	LowGQX	END=55523508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	55523509	.	T	.	.	LowGQX	.	GT	./.
chr2	55523510	.	T	.	.	LowGQX	END=55523513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	55523514	.	C	.	.	LowGQX	.	GT	./.
chr2	55523515	.	T	.	.	LowGQX	END=55523531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	55523532	.	T	.	.	LowGQX	.	GT	./.
chr2	55523533	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	55523534	.	T	.	.	LowGQX	END=55523661	GT	./.
chr2	55526966	.	A	.	.	LowGQX	END=55527065	GT	./.
chr2	55528270	.	T	.	.	LowGQX	END=55528373	GT	./.
chr2	55528374	.	C	.	.	LowGQX	END=55528375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55528376	.	A	.	.	LowGQX	.	GT	./.
chr2	55528377	.	A	.	.	LowGQX	END=55528390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55528391	.	T	.	.	LowGQX	END=55528392	GT	./.
chr2	55528393	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55528394	.	G	.	.	LowGQX	.	GT	./.
chr2	55528395	.	T	.	.	LowGQX	END=55528396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55528397	.	T	.	.	LowGQX	.	GT	./.
chr2	55528398	.	T	.	.	LowGQX	END=55528403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55528404	.	G	.	.	LowGQX	.	GT	./.
chr2	55528405	.	A	.	.	LowGQX	END=55528410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55528411	.	T	.	.	LowGQX	END=55528412	GT	./.
chr2	55528413	.	T	.	.	LowGQX	END=55528424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55528425	.	A	.	.	LowGQX	END=55528426	GT	./.
chr2	55528427	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55529006	.	A	.	.	LowGQX	END=55529173	GT	./.
chr2	55529174	.	T	.	.	LowGQX	END=55529177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55529178	.	A	.	.	LowGQX	END=55529179	GT	./.
chr2	55529180	.	G	.	.	LowGQX	END=55529189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55529190	.	T	.	.	LowGQX	.	GT	./.
chr2	55529191	.	G	.	.	LowGQX	END=55529210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55530197	.	A	.	.	LowGQX	END=55530296	GT	./.
chr2	55535943	.	A	.	.	LowGQX	END=55536102	GT	./.
chr2	55536103	.	A	.	.	LowGQX	END=55536161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	55536295	.	T	.	.	LowGQX	END=55536394	GT	./.
chr2	55539568	.	A	.	.	LowGQX	END=55539717	GT	./.
chr2	55543062	.	A	.	.	LowGQX	END=55543252	GT	./.
chr2	55544340	.	A	.	.	LowGQX	END=55544487	GT	./.
chr2	55544698	.	A	.	.	LowGQX	END=55544979	GT	./.
chr2	55545977	.	A	.	.	LowGQX	END=55546014	GT	./.
chr2	55546015	.	C	.	.	LowGQX	END=55546137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	55546138	.	A	.	.	LowGQX	END=55546142	GT	./.
chr2	55549662	.	A	.	.	LowGQX	END=55549830	GT	./.
chr2	55555388	.	T	.	.	LowGQX	END=55555573	GT	./.
chr2	55559700	.	A	.	.	LowGQX	END=55559831	GT	./.
chr2	55561228	.	A	.	.	LowGQX	END=55562302	GT	./.
chr2	55563815	.	A	.	.	LowGQX	END=55563875	GT	./.
chr2	55563876	.	T	.	.	LowGQX	END=55563877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55563878	.	A	.	.	LowGQX	END=55563879	GT	./.
chr2	55563880	.	T	.	.	LowGQX	END=55563925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55563926	.	T	.	.	LowGQX	.	GT	./.
chr2	55563927	.	G	.	.	LowGQX	END=55563954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55563955	.	C	.	.	LowGQX	.	GT	./.
chr2	55563956	.	T	.	.	LowGQX	END=55563957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55563958	.	G	.	.	LowGQX	.	GT	./.
chr2	55563959	.	A	.	.	LowGQX	END=55563994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55566598	.	A	.	.	LowGQX	END=55566786	GT	./.
chr2	55570782	.	A	.	.	LowGQX	END=55570930	GT	./.
chr2	55571502	.	A	.	.	LowGQX	END=55571652	GT	./.
chr2	55573309	.	A	.	.	LowGQX	END=55573471	GT	./.
chr2	55576592	.	A	.	.	LowGQX	END=55576744	GT	./.
chr2	55582673	.	G	.	.	LowGQX	END=55582889	GT	./.
chr2	55589442	.	A	.	.	LowGQX	END=55589621	GT	./.
chr2	55591078	.	G	.	.	LowGQX	END=55591177	GT	./.
chr2	55599568	.	G	.	.	LowGQX	END=55599593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55599594	.	T	.	.	LowGQX	END=55599667	GT	./.
chr2	55601935	.	A	.	.	LowGQX	END=55602034	GT	./.
chr2	55615862	.	A	.	.	LowGQX	END=55616024	GT	./.
chr2	55645950	.	A	.	.	LowGQX	END=55646054	GT	./.
chr2	55646135	.	A	.	.	LowGQX	END=55646171	GT	./.
chr2	55646172	.	G	.	.	LowGQX	END=55646213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55646214	.	A	.	.	LowGQX	.	GT	./.
chr2	55646215	.	T	.	.	LowGQX	END=55646234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55746936	.	G	.	.	LowGQX	END=55747054	GT	./.
chr2	55747528	.	T	.	.	LowGQX	END=55747627	GT	./.
chr2	55749166	.	A	.	.	LowGQX	END=55749320	GT	./.
chr2	55750855	.	A	.	.	LowGQX	END=55750960	GT	./.
chr2	55756012	.	A	.	.	LowGQX	END=55756034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55756035	.	G	.	.	LowGQX	.	GT	./.
chr2	55756036	.	C	.	.	LowGQX	END=55756053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55756054	.	T	.	.	LowGQX	END=55756055	GT	./.
chr2	55756056	.	T	.	.	LowGQX	END=55756081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55756082	.	C	.	.	LowGQX	.	GT	./.
chr2	55756083	.	A	.	.	LowGQX	END=55756092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	55756093	.	A	.	.	LowGQX	.	GT	./.
chr2	55756094	.	G	.	.	LowGQX	END=55756106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	55756107	.	C	.	.	LowGQX	.	GT	./.
chr2	55756108	.	G	.	.	LowGQX	END=55756111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55756112	.	A	.	.	LowGQX	.	GT	./.
chr2	55756113	.	A	.	.	LowGQX	END=55756115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55756116	.	C	.	.	LowGQX	.	GT	./.
chr2	55756117	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55756118	.	A	.	.	LowGQX	.	GT	./.
chr2	55756119	.	G	.	.	LowGQX	END=55756127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55756128	.	G	.	.	LowGQX	.	GT	./.
chr2	55756129	.	G	.	.	LowGQX	END=55756130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55761003	.	G	.	.	LowGQX	END=55761102	GT	./.
chr2	55762826	.	A	.	.	LowGQX	END=55763034	GT	./.
chr2	55764617	.	A	.	.	LowGQX	END=55764723	GT	./.
chr2	55765869	.	G	.	.	LowGQX	END=55765968	GT	./.
chr2	55771072	.	A	.	.	LowGQX	END=55771130	GT	./.
chr2	55771131	.	G	.	.	LowGQX	END=55771160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55771161	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	55771162	.	C	.	.	LowGQX	END=55771191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55771192	.	C	.	.	LowGQX	.	GT	./.
chr2	55771193	.	A	.	.	LowGQX	END=55771199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55771200	.	G	.	.	LowGQX	.	GT	./.
chr2	55771201	.	A	.	.	LowGQX	END=55771222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55771223	.	C	.	.	LowGQX	.	GT	./.
chr2	55771224	.	A	.	.	LowGQX	END=55771231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55771232	.	A	.	.	LowGQX	.	GT	./.
chr2	55771233	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55771234	.	A	.	.	LowGQX	.	GT	./.
chr2	55771235	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55771236	.	C	.	.	LowGQX	.	GT	./.
chr2	55771237	.	T	.	.	LowGQX	END=55771244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55771245	.	A	.	.	LowGQX	.	GT	./.
chr2	55771246	.	A	.	.	LowGQX	END=55771249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55771250	.	A	.	.	LowGQX	.	GT	./.
chr2	55771251	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55771354	.	A	.	.	LowGQX	END=55771359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55771360	.	T	.	.	LowGQX	.	GT	./.
chr2	55771361	.	A	.	.	LowGQX	END=55771403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55771404	.	C	.	.	LowGQX	.	GT	./.
chr2	55771405	.	T	.	.	LowGQX	END=55771429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55771430	.	G	.	.	LowGQX	.	GT	./.
chr2	55771431	.	T	.	.	LowGQX	END=55771432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55771433	.	C	.	.	LowGQX	.	GT	./.
chr2	55771434	.	A	.	.	LowGQX	END=55771495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55771496	.	G	.	.	LowGQX	END=55771507	GT	./.
chr2	55772041	.	A	.	.	LowGQX	END=55772146	GT	./.
chr2	55776985	.	T	.	.	LowGQX	END=55777204	GT	./.
chr2	55785909	.	A	.	.	LowGQX	END=55786011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55786012	.	C	.	.	LowGQX	END=55786106	GT	./.
chr2	55791447	.	A	.	.	LowGQX	END=55791635	GT	./.
chr2	55791986	.	C	.	.	LowGQX	END=55792179	GT	./.
chr2	55795328	.	A	.	.	LowGQX	END=55795501	GT	./.
chr2	55800724	.	A	.	.	LowGQX	END=55800913	GT	./.
chr2	55804369	.	A	.	.	LowGQX	END=55804521	GT	./.
chr2	55805381	.	A	.	.	LowGQX	END=55805480	GT	./.
chr2	55806813	.	A	.	.	LowGQX	END=55806919	GT	./.
chr2	55808701	.	A	.	.	LowGQX	END=55808836	GT	./.
chr2	55812135	.	A	.	.	LowGQX	END=55812305	GT	./.
chr2	55813752	.	A	.	.	LowGQX	END=55813782	GT	./.
chr2	55813783	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55813784	.	C	.	.	LowGQX	.	GT	./.
chr2	55813785	.	A	.	.	LowGQX	END=55813786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55813787	.	T	.	.	LowGQX	.	GT	./.
chr2	55813788	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55813789	.	T	.	.	LowGQX	.	GT	./.
chr2	55813790	.	T	.	.	LowGQX	END=55813802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55813803	.	A	.	.	LowGQX	.	GT	./.
chr2	55813804	.	A	.	.	LowGQX	END=55813809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55813810	.	C	.	.	LowGQX	.	GT	./.
chr2	55813811	.	A	.	.	LowGQX	END=55813842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55813843	.	A	.	.	LowGQX	.	GT	./.
chr2	55813844	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55813845	.	G	.	.	LowGQX	.	GT	./.
chr2	55813846	.	C	.	.	LowGQX	END=55813854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55813855	.	C	.	.	LowGQX	.	GT	./.
chr2	55813856	.	C	.	.	LowGQX	END=55813861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55813862	.	A	.	.	LowGQX	.	GT	./.
chr2	55813863	.	A	.	.	LowGQX	END=55813866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55813867	.	T	.	.	LowGQX	.	GT	./.
chr2	55813868	.	A	.	.	LowGQX	END=55813869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55813870	.	C	.	.	LowGQX	.	GT	./.
chr2	55813871	.	C	.	.	LowGQX	END=55813872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55816004	.	T	.	.	LowGQX	END=55816103	GT	./.
chr2	55825550	.	A	.	.	LowGQX	END=55826177	GT	./.
chr2	55831112	.	A	.	.	LowGQX	END=55831214	GT	./.
chr2	55842505	.	G	.	.	LowGQX	END=55842664	GT	./.
chr2	55844278	.	A	.	.	LowGQX	END=55844423	GT	./.
chr2	55863370	.	A	.	.	LowGQX	END=55863529	GT	./.
chr2	55864661	.	A	.	.	LowGQX	END=55864756	GT	./.
chr2	55864757	.	A	.	.	LowGQX	END=55864760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55867700	.	A	.	.	LowGQX	END=55867851	GT	./.
chr2	55870271	.	A	.	.	LowGQX	END=55870321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55870322	.	T	.	.	LowGQX	END=55870370	GT	./.
chr2	55870452	.	A	.	.	LowGQX	END=55870562	GT	./.
chr2	55871764	.	A	.	.	LowGQX	END=55871863	GT	./.
chr2	55872476	.	T	.	.	LowGQX	END=55872575	GT	./.
chr2	55873376	.	T	.	.	LowGQX	END=55873475	GT	./.
chr2	55873536	.	G	.	.	LowGQX	END=55873635	GT	./.
chr2	55874478	.	T	.	.	LowGQX	END=55874590	GT	./.
chr2	55882012	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55882013	.	T	.	.	LowGQX	END=55882079	GT	./.
chr2	55882080	.	A	.	.	LowGQX	END=55882107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55882108	.	T	.	.	LowGQX	.	GT	./.
chr2	55882109	.	G	.	.	LowGQX	END=55882111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55883261	.	C	.	.	LowGQX	END=55883265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	55883266	.	C	.	.	LowGQX	END=55883360	GT	./.
chr2	55883424	.	A	.	.	LowGQX	END=55883523	GT	./.
chr2	55887210	.	G	.	.	LowGQX	END=55887360	GT	./.
chr2	55889019	.	T	.	.	LowGQX	END=55889176	GT	./.
chr2	55894124	.	A	.	.	LowGQX	END=55894282	GT	./.
chr2	55894934	.	A	.	.	LowGQX	END=55895154	GT	./.
chr2	55898433	.	A	.	.	LowGQX	END=55898532	GT	./.
chr2	55899106	.	A	.	.	LowGQX	END=55899205	GT	./.
chr2	55900026	.	A	.	.	LowGQX	END=55900216	GT	./.
chr2	55906755	.	G	.	.	LowGQX	END=55906932	GT	./.
chr2	55907821	.	T	.	.	LowGQX	END=55907920	GT	./.
chr2	55907963	.	A	.	.	LowGQX	END=55908062	GT	./.
chr2	55910895	.	C	.	.	LowGQX	END=55910994	GT	./.
chr2	55912076	.	A	.	.	LowGQX	END=55912185	GT	./.
chr2	55913493	.	G	.	.	LowGQX	END=55913592	GT	./.
chr2	55914761	.	A	.	.	LowGQX	END=55914785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	55914786	.	T	.	.	LowGQX	END=55914860	GT	./.
chr2	55920796	.	A	.	.	LowGQX	END=55920960	GT	./.
chr2	56094157	.	A	.	.	PASS	END=56094240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:84:60
chr2	56094241	.	T	.	.	PASS	END=56094252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	56094253	.	G	.	.	PASS	END=56094273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	56094274	.	A	.	.	PASS	END=56094275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	56094276	.	T	.	.	PASS	END=56094291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr2	56094292	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:33:60
chr2	56094293	.	T	.	.	PASS	END=56094312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr2	56094313	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:33:60
chr2	56094314	.	C	.	.	PASS	END=56094340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	56094341	.	A	.	.	PASS	END=56094353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	56094354	.	T	.	.	PASS	END=56094380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	56094381	.	G	.	.	PASS	END=56094393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	56094394	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	56094395	.	G	.	.	PASS	END=56094407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	56094408	.	T	.	.	PASS	END=56094420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	56097804	.	C	.	.	PASS	END=56097819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	56097820	.	T	.	.	PASS	END=56097837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	56097838	.	G	.	.	PASS	END=56097853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	56097854	.	C	.	.	PASS	END=56097909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	56097910	.	G	.	.	PASS	END=56098202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr2	56098203	.	A	.	.	PASS	END=56098259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	56098260	.	T	.	.	PASS	END=56098274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	56098275	.	T	.	.	PASS	END=56098304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	56098305	.	T	.	.	PASS	END=56098309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	56102030	.	C	.	.	PASS	END=56102061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	56102061	.	GA	G	558.20	PASS	BaseQRankSum=4.156;DP=47;FS=6.309;HRun=10;HaplotypeScore=118.8451;MQ=60;MQ0=0;MQRankSum=-0.750;QD=11.88;ReadPosRankSum=-0.394;SB=-245.74	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:23,23:47:99:597,0,385:60:99:0.500
chr2	56102062	.	A	.	90.19	PASS	DP=47;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:24:24:60.20:60:60
chr2	56102063	.	A	.	.	PASS	END=56102088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr2	56102089	.	G	.	.	PASS	END=56102111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	56102112	.	T	.	.	PASS	END=56102125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	56102126	.	T	.	.	PASS	END=56102183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	56102184	.	T	.	.	PASS	END=56102234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:88:60
chr2	56102235	.	G	.	.	PASS	END=56102251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	56103707	.	A	.	.	PASS	END=56103729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr2	56103730	.	A	.	.	PASS	END=56103756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	56103757	.	C	.	.	PASS	END=56103774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	56103775	.	T	.	.	PASS	END=56103789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	56103790	.	T	.	.	PASS	END=56103868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	56103869	.	C	.	.	PASS	END=56103907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	56103908	.	T	.	.	PASS	END=56103920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	56103921	.	A	.	.	PASS	END=56103928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	56104830	.	T	.	.	PASS	END=56104855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr2	56104856	.	A	.	.	PASS	END=56104978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr2	56104979	.	G	.	.	PASS	END=56105020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	56105021	.	A	.	.	PASS	END=56105039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	56105040	.	T	.	.	PASS	END=56105051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	56108696	.	A	.	.	PASS	END=56108704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:60
chr2	56108705	.	G	.	.	PASS	END=56108711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr2	56108712	.	A	.	.	PASS	END=56108728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr2	56108729	.	C	.	.	PASS	END=56108739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	56108740	.	T	.	.	PASS	END=56108755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	56108756	.	G	.	.	PASS	END=56108849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	56108850	.	T	.	.	PASS	END=56108862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	56108863	.	T	.	.	PASS	END=56108873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	56108874	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:69:60
chr2	56108875	.	A	.	.	PASS	END=56108881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr2	56108882	.	T	C	538.76	PASS	BaseQRankSum=-0.972;DP=43;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-0.135;QD=12.53;ReadPosRankSum=-0.554;SB=-232.90	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:18,25:43:99:569,0,406:60:99:0.581
chr2	56108883	.	G	.	.	PASS	END=56108894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr2	56108895	.	G	.	.	PASS	END=56108900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	56108901	.	T	.	.	PASS	END=56108920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	56144749	.	G	.	.	PASS	END=56144792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr2	56144793	.	T	.	.	PASS	END=56144811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	56144812	.	T	.	.	PASS	END=56144832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	56144833	.	C	.	.	PASS	END=56144842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	56144843	.	C	.	.	PASS	END=56144859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	56144860	.	G	.	.	PASS	END=56144879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr2	56144880	.	G	.	.	PASS	END=56144946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:247:99:60
chr2	56144947	.	C	.	.	PASS	END=56145046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:285:99:60
chr2	56145047	.	T	.	.	PASS	END=56145093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr2	56145094	.	C	.	.	PASS	END=56145128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr2	56145129	.	T	.	.	PASS	END=56145159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	56145160	.	C	.	.	PASS	END=56145187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	56145188	.	T	.	.	PASS	END=56145237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	56145303	.	A	.	.	PASS	END=56145410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	56145411	.	A	.	.	PASS	END=56145440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	56145441	.	T	.	.	PASS	END=56145453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	56149444	.	G	.	.	PASS	END=56149460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr2	56149461	.	A	.	.	PASS	END=56149485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	56149486	.	A	.	.	PASS	END=56149500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	56149501	.	C	.	.	PASS	END=56149535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	56149536	.	G	.	.	PASS	END=56149618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	56149619	.	C	.	.	PASS	END=56149626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	56210052	.	G	.	.	LowGQX	END=56210211	GT	./.
chr2	56216085	.	T	.	.	LowGQX	END=56216194	GT	./.
chr2	56227780	.	G	.	.	LowGQX	END=56227939	GT	./.
chr2	56411759	.	C	.	.	LowGQX	END=56412035	GT	./.
chr2	56419611	.	G	.	.	LowGQX	END=56419845	GT	./.
chr2	56419846	.	C	.	.	LowGQX	END=56420005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	56420006	.	A	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	56420007	.	C	.	.	LowGQX	END=56420021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	56420022	.	G	.	.	LowGQX	END=56420032	GT	./.
chr2	56420033	.	G	.	.	LowGQX	END=56420135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	56420136	.	C	A	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr2	56420137	.	C	.	.	LowGQX	END=56420165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	56420166	.	T	.	.	LowGQX	END=56420575	GT	./.
chr2	56569992	.	A	.	.	LowGQX	END=56570091	GT	./.
chr2	56599478	.	G	.	.	LowGQX	END=56599564	GT	./.
chr2	56599565	.	G	.	.	LowGQX	END=56599613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	56602900	.	A	.	.	LowGQX	END=56603070	GT	./.
chr2	56611396	.	T	.	.	LowGQX	END=56611495	GT	./.
chr2	58275668	.	C	.	.	LowGQX	END=58275674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	58275675	.	T	.	.	LowGQX	END=58275767	GT	./.
chr2	58275962	.	A	.	.	LowGQX	END=58276081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	58276082	.	G	.	.	LowGQX	END=58276104	GT	./.
chr2	58285458	.	C	.	.	LowGQX	END=58285557	GT	./.
chr2	58311199	.	C	.	.	LowGQX	END=58311298	GT	./.
chr2	58311944	.	C	.	.	LowGQX	END=58312100	GT	./.
chr2	58313411	.	G	.	.	LowGQX	END=58313426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	58313427	.	C	.	.	LowGQX	END=58313563	GT	./.
chr2	58315474	.	A	.	.	LowGQX	END=58315633	GT	./.
chr2	58316763	.	C	.	.	LowGQX	END=58316913	GT	./.
chr2	58350203	.	G	.	.	LowGQX	END=58350413	GT	./.
chr2	58358941	.	A	.	.	LowGQX	END=58359032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	58359033	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	58359034	.	C	.	.	LowGQX	END=58359040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	58359041	.	G	.	.	LowGQX	END=58359130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	58362256	.	A	.	.	LowGQX	END=58362290	GT	./.
chr2	58362291	.	C	.	.	LowGQX	END=58362355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	58366799	.	A	.	.	LowGQX	END=58366935	GT	./.
chr2	58366936	.	G	.	.	LowGQX	END=58366969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	58373449	.	A	.	.	LowGQX	END=58373611	GT	./.
chr2	58374256	.	C	.	.	LowGQX	END=58374258	GT	./.
chr2	58374259	.	A	.	.	LowGQX	END=58374355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	58381847	.	C	.	.	LowGQX	END=58381946	GT	./.
chr2	58386482	.	A	.	.	LowGQX	END=58386486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	58386487	.	A	.	.	LowGQX	.	GT	./.
chr2	58386488	.	G	.	.	LowGQX	END=58386491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	58386492	.	A	.	.	LowGQX	END=58386493	GT	./.
chr2	58386494	.	G	.	.	LowGQX	END=58386588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	58386589	.	T	.	.	LowGQX	.	GT	./.
chr2	58386590	.	A	.	.	LowGQX	END=58386623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	58386624	.	A	.	.	LowGQX	END=58386654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	58386655	.	A	.	.	LowGQX	END=58386666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr2	58386667	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr2	58386668	.	C	.	.	LowGQX	END=58386673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr2	58386674	.	G	.	.	PASS	END=58386689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	58386690	.	C	.	.	PASS	END=58386726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	58386727	.	C	.	.	PASS	END=58386741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr2	58386742	.	G	.	.	PASS	END=58386776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr2	58386777	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:66:60
chr2	58386778	.	A	.	.	PASS	END=58386788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr2	58386789	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:67:60
chr2	58386790	.	C	.	.	PASS	END=58386830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	58386849	.	T	.	.	PASS	END=58386880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr2	58386881	.	G	.	.	PASS	END=58386932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	58386933	.	T	.	.	PASS	END=58386956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	58386957	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:75:60
chr2	58386958	.	A	.	.	PASS	END=58386986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr2	58387192	.	A	.	.	PASS	END=58387244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	58387245	.	T	.	.	PASS	END=58387312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	58387313	.	C	.	.	PASS	END=58387361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	58387362	.	T	.	.	PASS	END=58387365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	58388606	.	T	.	.	PASS	END=58388694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	58388695	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:99:60
chr2	58388696	.	A	G	653.12	PASS	BaseQRankSum=0.098;DP=53;Dels=0.00;FS=12.903;HRun=1;HaplotypeScore=1.9662;MQ=60;MQ0=0;MQRankSum=0.829;QD=12.32;ReadPosRankSum=-0.615;SB=-238.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,25:53:99:683,0,780:60:99:0.472
chr2	58388697	.	G	.	.	PASS	END=58388772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	58388773	.	C	.	.	PASS	END=58388808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	58388809	.	T	.	.	PASS	END=58388824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr2	58389950	.	A	.	.	PASS	END=58389958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	58389959	.	A	.	.	PASS	END=58390033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	58390034	.	A	.	.	PASS	END=58390137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	58390138	.	A	.	.	PASS	END=58390253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	58390254	.	T	.	.	PASS	END=58390260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	58390518	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:99:59
chr2	58390519	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:58:59
chr2	58390520	.	A	.	.	PASS	END=58390534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:59
chr2	58390535	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:64:59
chr2	58390536	.	T	.	.	PASS	END=58390601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:59
chr2	58390602	.	G	.	.	PASS	END=58390613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	58390614	.	G	.	.	PASS	END=58390703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:97:60
chr2	58392808	.	A	.	.	LowGQX	END=58392823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	58392824	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	58392825	.	C	.	.	LowGQX	END=58392826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr2	58392827	.	A	.	.	PASS	END=58392828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	58392829	.	A	.	.	LowGQX	END=58392831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr2	58392832	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:1:60
chr2	58392833	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	58392834	.	A	.	.	LowGQX	END=58392835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr2	58392836	.	C	.	.	PASS	END=58392838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	58392839	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	58392840	.	T	.	.	PASS	END=58392845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	58392846	.	T	.	.	PASS	END=58392850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	58392851	.	G	.	.	PASS	END=58392856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	58392857	.	A	.	.	PASS	END=58392875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr2	58392876	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:60
chr2	58392877	.	C	.	.	PASS	END=58392898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr2	58392899	.	T	.	.	PASS	END=58392934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:78:60
chr2	58392935	.	A	.	.	PASS	END=58393007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	58393008	.	C	.	.	PASS	END=58393037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	58393038	.	T	.	.	PASS	END=58393047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr2	58393048	.	T	.	.	PASS	END=58393059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr2	58393060	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:54:60
chr2	58421337	.	C	.	.	LowGQX	END=58421436	GT	./.
chr2	58425713	.	C	.	.	PASS	END=58425735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	58425736	.	G	.	.	PASS	END=58425813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	58425814	.	A	.	.	PASS	END=58425848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	58431214	.	C	.	.	PASS	END=58431249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	58431250	.	T	.	.	PASS	END=58431273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	58431274	.	C	.	.	PASS	END=58431350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	58431351	.	C	.	.	PASS	END=58431375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	58431376	.	A	.	.	PASS	END=58431410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:91:60
chr2	58431411	.	A	.	.	PASS	END=58431412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	58449026	.	T	.	.	PASS	END=58449073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	58449074	.	T	.	.	PASS	END=58449091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	58449092	.	G	.	.	PASS	END=58449224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	58449225	.	G	.	.	PASS	END=58449228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	58453812	.	A	.	.	PASS	END=58453817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr2	58453818	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:36:60
chr2	58453819	.	A	.	.	PASS	END=58453820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr2	58453821	.	T	.	.	PASS	END=58453822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	58453823	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:42:60
chr2	58453824	.	C	.	.	PASS	END=58453827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr2	58453828	.	A	.	.	PASS	END=58453842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr2	58453843	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:60:60
chr2	58453843	.	G	GA	124.52	PASS	BaseQRankSum=1.170;DP=30;FS=6.889;HRun=12;HaplotypeScore=146.3137;MQ=60;MQ0=0;MQRankSum=-0.390;QD=4.15;ReadPosRankSum=0.436;SB=-67.80	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:17,9:30:99:164,0,353:60:99:0.346
chr2	58453844	.	A	.	.	PASS	END=58453857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr2	58453858	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:25:60
chr2	58453859	.	T	.	.	PASS	END=58453863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr2	58453864	.	A	.	.	PASS	END=58453867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	58453868	.	G	.	.	PASS	END=58453869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr2	58453870	.	A	.	.	PASS	END=58453874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	58453875	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:21:60
chr2	58453876	.	A	.	.	PASS	END=58453886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	58453887	.	A	.	.	PASS	END=58453910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr2	58453911	.	C	.	.	PASS	END=58453917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr2	58453918	.	C	.	.	PASS	END=58453934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	58453935	.	T	.	.	PASS	END=58453954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr2	58453955	.	C	.	.	PASS	END=58453970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr2	58456898	.	T	.	.	PASS	END=58456950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	58456951	.	G	.	.	PASS	END=58457016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	58457017	.	T	.	.	PASS	END=58457060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	58459138	.	C	.	.	PASS	END=58459145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	58459146	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:42:60
chr2	58459147	.	C	.	.	PASS	END=58459171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	58459172	.	A	.	.	PASS	END=58459219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr2	58459220	.	A	.	.	PASS	END=58459291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr2	58459292	.	C	.	.	PASS	END=58459293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:74:60
chr2	58459294	.	T	.	.	PASS	END=58459298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	58468302	.	G	.	.	PASS	END=58468305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr2	58468306	.	C	.	.	PASS	END=58468319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr2	58468320	.	C	.	.	PASS	END=58468338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	58468339	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr2	58468340	.	A	.	.	PASS	END=58468350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr2	58468351	.	A	.	.	PASS	END=58468391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:91:60
chr2	58468392	.	G	.	.	PASS	END=58468485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	58468486	.	C	.	.	PASS	END=58468499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	60679699	.	T	.	.	PASS	END=60679773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	60679774	.	C	.	.	PASS	END=60679779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	60679780	.	C	.	.	PASS	END=60679797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	60679798	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:66:60
chr2	60679799	.	A	.	.	PASS	END=60679803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr2	60687537	.	C	.	.	PASS	END=60687554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	60687555	.	T	.	.	PASS	END=60687574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	60687575	.	A	.	.	PASS	END=60687615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	60687616	.	C	.	.	PASS	END=60687716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	60687717	.	T	.	.	PASS	END=60687790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	60687791	.	C	.	.	PASS	END=60687808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr2	60687809	.	G	.	.	PASS	END=60687958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr2	60687959	.	A	G	3155.45	PASS	BaseQRankSum=3.326;DP=256;Dels=0.00;FS=2.335;HRun=0;HaplotypeScore=17.3461;MQ=60;MQ0=0;MQRankSum=1.622;QD=12.33;ReadPosRankSum=0.143;SB=-1239.48	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:141,115:256:99:3185,0,3196:60:99:0.449
chr2	60687960	.	C	.	.	PASS	END=60688152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr2	60688153	.	A	.	.	PASS	END=60688252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr2	60688253	.	G	.	.	PASS	END=60688366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr2	60688367	.	C	.	.	PASS	END=60688396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	60688397	.	C	.	.	PASS	END=60688527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	60688528	.	C	.	.	PASS	END=60688660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	60688661	.	C	.	.	PASS	END=60688822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr2	60688823	.	G	.	.	PASS	END=60688856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	60688857	.	C	.	.	PASS	END=60688910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	60688911	.	C	.	.	PASS	END=60688934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	60688935	.	T	.	.	PASS	END=60688953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	60688954	.	A	.	.	PASS	END=60688968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	60688969	.	G	.	.	PASS	END=60688979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	60688980	.	G	.	.	PASS	END=60689016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	60689017	.	G	.	.	PASS	END=60689033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	60689034	.	G	.	.	PASS	END=60689061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr2	60689062	.	G	.	.	PASS	END=60689119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr2	60689120	.	C	.	.	PASS	END=60689194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr2	60689195	.	C	.	.	PASS	END=60689299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr2	60689300	.	T	.	.	PASS	END=60689477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr2	60689478	.	T	.	.	PASS	END=60689510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr2	60689511	.	A	.	.	PASS	END=60689541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	60689542	.	T	.	.	PASS	END=60689560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	60689561	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:106:99:60
chr2	60695804	.	A	.	.	PASS	END=60695872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr2	60695873	.	C	.	.	PASS	END=60695893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr2	60695894	.	T	.	.	PASS	END=60695918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	60695919	.	T	.	.	PASS	END=60696024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	60768989	.	A	.	.	LowGQX	END=60769088	GT	./.
chr2	60773104	.	A	.	.	PASS	END=60773154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	60773155	.	A	.	.	PASS	END=60773208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:87:60
chr2	60773209	.	T	.	.	PASS	END=60773342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	60773343	.	G	.	.	PASS	END=60773406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	60773407	.	A	.	.	PASS	END=60773437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	60780278	.	C	.	.	PASS	END=60780290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:60:60
chr2	60780291	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:37:24:60
chr2	60780292	.	T	.	.	PASS	END=60780321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:57:60
chr2	60780322	.	A	.	.	PASS	END=60780344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr2	60780345	.	A	.	.	PASS	END=60780404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr2	60780405	.	T	.	.	PASS	END=60780412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr2	60780413	.	T	.	.	PASS	END=60780423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:54:60
chr2	60780424	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:18:60
chr2	60780425	.	G	.	.	PASS	END=60780428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:48:60
chr2	60780429	.	G	.	.	PASS	END=60780455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:51:60
chr2	60780456	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:35:15:60
chr2	60780457	.	G	.	.	PASS	END=60780474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:54:60
chr2	60780475	.	G	.	.	PASS	END=60780485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr2	60780486	.	G	.	.	PASS	END=60780495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr2	60780496	.	A	.	.	PASS	END=60780500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr2	60780501	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:10:60
chr2	60780502	.	C	.	.	PASS	END=60780513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	60780514	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr2	60780515	.	A	.	.	PASS	END=60780523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	60780524	.	A	.	.	LowGQX	END=60780535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	60780536	.	C	.	.	LowGQX	END=60780544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	60983513	.	G	.	.	LowGQX	END=60983672	GT	./.
chr2	60987237	.	T	.	.	LowGQX	END=60987327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	60987328	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	60987329	.	T	.	.	LowGQX	END=60987380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	60987381	.	G	.	.	LowGQX	.	GT	./.
chr2	60987382	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	60987383	.	C	.	.	LowGQX	.	GT	./.
chr2	60987384	.	A	.	.	LowGQX	END=60987387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	60987388	.	A	.	.	LowGQX	.	GT	./.
chr2	60987389	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	60987390	.	C	.	.	LowGQX	.	GT	./.
chr2	60987391	.	C	.	.	LowGQX	END=60987410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	60987411	.	G	.	.	LowGQX	.	GT	./.
chr2	60987412	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	60987413	.	G	.	.	LowGQX	END=60987414	GT	./.
chr2	60987415	.	A	.	.	LowGQX	END=60987416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	60987417	.	G	.	.	LowGQX	.	GT	./.
chr2	60987418	.	A	.	.	LowGQX	END=60987424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	60987425	.	C	.	.	LowGQX	.	GT	./.
chr2	60987426	.	C	.	.	LowGQX	END=60987432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	60988804	.	C	.	.	LowGQX	END=60988876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	60988877	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	60988878	.	T	.	.	LowGQX	END=60988883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	60988884	.	T	.	.	LowGQX	.	GT	./.
chr2	60988885	.	T	.	.	LowGQX	END=60988896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	60988897	.	G	.	.	LowGQX	.	GT	./.
chr2	60988898	.	A	.	.	LowGQX	END=60988911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	60988912	.	A	.	.	LowGQX	.	GT	./.
chr2	60988913	.	G	.	.	LowGQX	END=60988916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	60988917	.	G	.	.	LowGQX	.	GT	./.
chr2	60988918	.	G	.	.	LowGQX	END=60988921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	60988922	.	T	.	.	LowGQX	END=60988959	GT	./.
chr2	60995596	.	T	.	.	LowGQX	END=60995674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	60995675	.	T	.	.	LowGQX	END=60995695	GT	./.
chr2	60995914	.	A	.	.	LowGQX	END=60995917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	60995918	.	G	.	.	LowGQX	.	GT	./.
chr2	60995919	.	C	.	.	LowGQX	END=60995922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	60995923	.	C	.	.	LowGQX	END=60995924	GT	./.
chr2	60995925	.	T	.	.	LowGQX	END=60995932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	60995933	.	C	.	.	LowGQX	END=60996027	GT	./.
chr2	60997570	.	A	.	.	LowGQX	END=60997669	GT	./.
chr2	60998652	.	A	.	.	LowGQX	END=60998811	GT	./.
chr2	61002097	.	G	.	.	LowGQX	END=61002263	GT	./.
chr2	61006770	.	A	.	.	LowGQX	END=61006912	GT	./.
chr2	61007829	.	T	.	.	LowGQX	END=61007928	GT	./.
chr2	61009018	.	A	.	.	LowGQX	END=61009142	GT	./.
chr2	61009759	.	G	.	.	LowGQX	END=61009913	GT	./.
chr2	61010268	.	G	.	.	LowGQX	END=61010367	GT	./.
chr2	61014080	.	A	.	.	LowGQX	END=61014203	GT	./.
chr2	61014644	.	A	.	.	LowGQX	END=61014803	GT	./.
chr2	61018894	.	A	.	.	LowGQX	END=61018921	GT	./.
chr2	61018922	.	A	.	.	LowGQX	END=61018976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61018977	.	A	.	.	LowGQX	.	GT	./.
chr2	61018978	.	C	.	.	LowGQX	END=61019008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61019009	.	A	.	.	LowGQX	.	GT	./.
chr2	61019010	.	A	.	.	LowGQX	END=61019019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61019262	.	A	.	.	LowGQX	END=61019295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61019296	.	C	.	.	LowGQX	.	GT	./.
chr2	61019297	.	G	.	.	LowGQX	END=61019341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61019342	.	A	.	.	LowGQX	END=61019451	GT	./.
chr2	61020757	.	A	.	.	LowGQX	END=61020856	GT	./.
chr2	61021104	.	A	.	.	LowGQX	END=61021328	GT	./.
chr2	61021828	.	C	.	.	LowGQX	END=61021927	GT	./.
chr2	61022078	.	T	.	.	LowGQX	END=61022090	GT	./.
chr2	61022091	.	G	.	.	LowGQX	END=61022177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61022399	.	T	.	.	LowGQX	END=61022407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61022408	.	G	.	.	LowGQX	.	GT	./.
chr2	61022409	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61022410	.	T	.	.	LowGQX	.	GT	./.
chr2	61022411	.	T	.	.	LowGQX	END=61022415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61022416	.	T	.	.	LowGQX	END=61022417	GT	./.
chr2	61022418	.	T	.	.	LowGQX	END=61022423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61022424	.	G	.	.	LowGQX	.	GT	./.
chr2	61022425	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61022426	.	A	.	.	LowGQX	.	GT	./.
chr2	61022427	.	G	.	.	LowGQX	END=61022428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61022429	.	A	.	.	LowGQX	.	GT	./.
chr2	61022430	.	G	.	.	LowGQX	END=61022431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61022432	.	T	.	.	LowGQX	END=61022498	GT	./.
chr2	61024195	.	A	.	.	LowGQX	END=61024297	GT	./.
chr2	61108871	.	G	.	.	LowGQX	END=61108913	GT	./.
chr2	61108914	.	C	.	.	LowGQX	END=61109010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61109011	.	G	.	.	LowGQX	END=61109012	GT	./.
chr2	61109013	.	G	.	.	LowGQX	END=61109016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61109017	.	G	.	.	LowGQX	.	GT	./.
chr2	61109018	.	G	.	.	LowGQX	END=61109023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61109024	.	G	.	.	LowGQX	.	GT	./.
chr2	61109025	.	G	.	.	LowGQX	END=61109030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61118816	.	A	.	.	LowGQX	END=61118962	GT	./.
chr2	61121530	.	A	.	.	LowGQX	END=61121627	GT	./.
chr2	61121628	.	T	.	.	LowGQX	END=61121634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61121635	.	A	.	.	LowGQX	.	GT	./.
chr2	61121636	.	C	.	.	LowGQX	END=61121645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61121646	.	G	.	.	LowGQX	.	GT	./.
chr2	61121647	.	A	.	.	LowGQX	END=61121677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61121678	.	G	.	.	LowGQX	.	GT	./.
chr2	61121679	.	T	.	.	LowGQX	END=61121682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	61128065	.	T	.	.	LowGQX	END=61128222	GT	./.
chr2	61144010	.	A	.	.	LowGQX	END=61144154	GT	./.
chr2	61145324	.	A	.	.	LowGQX	END=61145432	GT	./.
chr2	61145527	.	A	.	.	LowGQX	END=61145593	GT	./.
chr2	61145594	.	G	.	.	LowGQX	END=61145737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61145738	.	A	.	.	LowGQX	.	GT	./.
chr2	61145739	.	A	.	.	LowGQX	END=61145743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61147161	.	T	.	.	LowGQX	END=61147260	GT	./.
chr2	61147516	.	A	.	.	LowGQX	END=61147793	GT	./.
chr2	61148896	.	A	.	.	LowGQX	END=61149614	GT	./.
chr2	61149615	.	G	.	.	LowGQX	END=61149642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61149643	.	C	.	.	LowGQX	.	GT	./.
chr2	61149644	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61149645	.	T	.	.	LowGQX	.	GT	./.
chr2	61149646	.	T	.	.	LowGQX	END=61149672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61169500	.	A	.	.	LowGQX	END=61169599	GT	./.
chr2	61172142	.	A	.	.	LowGQX	END=61172245	GT	./.
chr2	61175176	.	A	.	.	LowGQX	END=61175254	GT	./.
chr2	61175255	.	A	.	.	LowGQX	END=61175311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61175312	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	61175313	.	T	.	.	LowGQX	END=61175322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61180130	.	A	.	.	LowGQX	END=61180251	GT	./.
chr2	61181046	.	T	.	.	LowGQX	END=61181145	GT	./.
chr2	61181206	.	A	.	.	LowGQX	END=61181305	GT	./.
chr2	61182132	.	G	.	.	LowGQX	END=61182231	GT	./.
chr2	61187525	.	A	.	.	LowGQX	END=61187526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61187527	.	T	.	.	LowGQX	END=61187535	GT	./.
chr2	61187536	.	T	.	.	LowGQX	END=61187537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61187538	.	A	.	.	LowGQX	.	GT	./.
chr2	61187539	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61187540	.	T	.	.	LowGQX	.	GT	./.
chr2	61187541	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61187542	.	C	.	.	LowGQX	END=61187544	GT	./.
chr2	61187545	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61187546	.	C	.	.	LowGQX	END=61187547	GT	./.
chr2	61187548	.	A	.	.	LowGQX	END=61187549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61187550	.	A	.	.	LowGQX	END=61187559	GT	./.
chr2	61187560	.	A	.	.	LowGQX	END=61187561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61187562	.	A	.	.	LowGQX	.	GT	./.
chr2	61187563	.	T	.	.	LowGQX	END=61187567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61187568	.	T	.	.	LowGQX	END=61187627	GT	./.
chr2	61187628	.	T	.	.	LowGQX	END=61187688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61187689	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr2	61187690	.	A	.	.	LowGQX	END=61187694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	61188591	.	A	.	.	LowGQX	END=61188690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61189884	.	G	.	.	LowGQX	END=61190098	GT	./.
chr2	61192166	.	G	.	.	LowGQX	END=61192265	GT	./.
chr2	61192486	.	A	.	.	LowGQX	END=61192638	GT	./.
chr2	61194585	.	G	.	.	LowGQX	END=61194750	GT	./.
chr2	61198626	.	G	.	.	LowGQX	END=61198725	GT	./.
chr2	61233630	.	A	.	.	LowGQX	END=61233785	GT	./.
chr2	61235894	.	A	.	.	LowGQX	END=61236152	GT	./.
chr2	61237942	.	T	.	.	LowGQX	END=61238041	GT	./.
chr2	61238898	.	A	.	.	LowGQX	END=61239027	GT	./.
chr2	61244844	.	C	.	.	PASS	END=61244848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	61244849	.	C	.	.	PASS	END=61244869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	61244870	.	C	.	.	PASS	END=61244985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	61244986	.	A	.	.	PASS	END=61244999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	61245000	.	T	.	.	PASS	END=61245014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	61245015	.	T	.	.	PASS	END=61245037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	61245296	.	G	.	.	LowGQX	END=61245396	GT	./.
chr2	61258503	.	T	.	.	PASS	END=61258538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr2	61258539	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:71:60
chr2	61258540	.	T	.	.	PASS	END=61258585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr2	61258586	.	G	.	.	PASS	END=61258600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	61258601	.	C	.	.	PASS	END=61258618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	61258619	.	C	.	.	PASS	END=61258637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	61258638	.	A	.	.	PASS	END=61258652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	61258653	.	A	.	.	PASS	END=61258704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr2	61258705	.	T	.	.	PASS	END=61258790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr2	61258791	.	A	.	.	PASS	END=61258870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr2	61258871	.	T	.	.	PASS	END=61258899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:324:99:60
chr2	61258900	.	A	.	.	PASS	END=61259027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:355:99:60
chr2	61259028	.	G	.	.	PASS	END=61259055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:271:99:60
chr2	61259056	.	T	.	.	PASS	END=61259088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr2	61259089	.	C	.	.	PASS	END=61259110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	61259111	.	C	.	.	PASS	END=61259129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	61259130	.	T	.	.	PASS	END=61259163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	61259164	.	C	.	.	PASS	END=61259193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	61259194	.	G	.	.	PASS	END=61259208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	61259209	.	A	.	.	PASS	END=61259237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:96:60
chr2	61259238	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:51:60
chr2	61259239	.	G	.	.	PASS	END=61259254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr2	61259255	.	G	.	.	PASS	END=61259263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr2	61259264	.	G	.	.	PASS	END=61259272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	61259273	.	T	.	.	PASS	END=61259283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	61259284	.	T	.	.	PASS	END=61259289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr2	61259290	.	A	.	.	LowGQX	END=61259292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:27:60
chr2	61259293	.	C	.	.	PASS	END=61259294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	61259295	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr2	61259296	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	61259297	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	61259298	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	61259299	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	61272810	.	T	.	.	PASS	END=61272838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	61272839	.	C	.	.	PASS	END=61272844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr2	61272845	.	T	.	.	PASS	END=61272863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr2	61272864	.	G	.	.	PASS	END=61272883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr2	61272884	.	G	.	.	PASS	END=61272910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr2	61272911	.	G	.	.	PASS	END=61273014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr2	61273015	.	T	.	.	PASS	END=61273037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr2	61275556	.	T	.	.	PASS	END=61275567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	61275568	.	G	.	.	PASS	END=61275589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	61275590	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:71:60
chr2	61275591	.	C	.	.	PASS	END=61275595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr2	61275596	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:71:60
chr2	61275597	.	T	.	.	PASS	END=61275617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr2	61275618	.	A	.	.	PASS	END=61275633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	61275634	.	T	.	.	PASS	END=61275663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:85:60
chr2	61275664	.	G	.	.	PASS	END=61275770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	61275771	.	C	G	1097.54	PASS	BaseQRankSum=-1.305;DP=106;Dels=0.00;FS=3.932;HRun=0;HaplotypeScore=14.2888;MQ=60;MQ0=0;MQRankSum=0.269;QD=10.35;ReadPosRankSum=-0.136;SB=-590.22	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:52,54:106:99:1128,0,1414:60:99:0.509
chr2	61275772	.	T	.	.	PASS	END=61275808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	61275809	.	A	.	.	PASS	END=61275821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	61275822	.	T	.	.	PASS	END=61275889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	61275890	.	A	.	.	PASS	END=61275893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	61275894	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:72:60
chr2	61275895	.	A	.	.	PASS	END=61275943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr2	61275944	.	A	.	.	PASS	END=61275956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr2	61297484	.	A	.	.	LowGQX	END=61297489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	61297490	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	61297491	.	T	.	.	LowGQX	END=61297590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61297591	.	T	.	.	LowGQX	END=61297673	GT	./.
chr2	61298739	.	A	.	.	LowGQX	END=61298938	GT	./.
chr2	61300590	.	A	.	.	LowGQX	END=61300689	GT	./.
chr2	61304053	.	A	.	.	LowGQX	END=61304295	GT	./.
chr2	61308515	.	G	.	.	LowGQX	END=61308558	GT	./.
chr2	61308559	.	G	.	.	LowGQX	END=61308584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308585	.	A	.	.	LowGQX	END=61308587	GT	./.
chr2	61308588	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308589	.	C	.	.	LowGQX	.	GT	./.
chr2	61308590	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308591	.	A	.	.	LowGQX	.	GT	./.
chr2	61308592	.	G	.	.	LowGQX	END=61308593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308594	.	A	.	.	LowGQX	.	GT	./.
chr2	61308595	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308596	.	A	.	.	LowGQX	.	GT	./.
chr2	61308597	.	T	.	.	LowGQX	END=61308599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308600	.	C	.	.	LowGQX	.	GT	./.
chr2	61308601	.	A	.	.	LowGQX	END=61308604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308605	.	C	.	.	LowGQX	.	GT	./.
chr2	61308606	.	A	.	.	LowGQX	END=61308608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308609	.	T	.	.	LowGQX	END=61308610	GT	./.
chr2	61308611	.	T	.	.	LowGQX	END=61308612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308613	.	A	.	.	LowGQX	.	GT	./.
chr2	61308614	.	T	.	.	LowGQX	END=61308616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308617	.	C	.	.	LowGQX	.	GT	./.
chr2	61308618	.	T	.	.	LowGQX	END=61308619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308620	.	C	.	.	LowGQX	.	GT	./.
chr2	61308621	.	G	.	.	LowGQX	END=61308622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308623	.	A	.	.	LowGQX	.	GT	./.
chr2	61308624	.	G	.	.	LowGQX	END=61308637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308638	.	A	.	.	LowGQX	.	GT	./.
chr2	61308639	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308640	.	T	.	.	LowGQX	END=61308641	GT	./.
chr2	61308642	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308643	.	C	.	.	LowGQX	END=61308646	GT	./.
chr2	61308647	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308648	.	A	.	.	LowGQX	END=61308649	GT	./.
chr2	61308650	.	G	.	.	LowGQX	END=61308651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308652	.	A	.	.	LowGQX	.	GT	./.
chr2	61308653	.	T	.	.	LowGQX	END=61308655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308656	.	A	.	.	LowGQX	END=61308657	GT	./.
chr2	61308658	.	T	.	.	LowGQX	END=61308659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308660	.	A	.	.	LowGQX	.	GT	./.
chr2	61308661	.	A	.	.	LowGQX	END=61308662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61308663	.	A	.	.	LowGQX	.	GT	./.
chr2	61308664	.	A	.	.	LowGQX	END=61308666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61310287	.	A	.	.	LowGQX	END=61310451	GT	./.
chr2	61315288	.	T	.	.	LowGQX	END=61315387	GT	./.
chr2	61315491	.	A	.	.	LowGQX	END=61315646	GT	./.
chr2	61315647	.	T	.	.	LowGQX	END=61315655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61319597	.	A	.	.	LowGQX	END=61319724	GT	./.
chr2	61324833	.	A	.	.	LowGQX	END=61324989	GT	./.
chr2	61330986	.	A	.	.	LowGQX	END=61331135	GT	./.
chr2	61333646	.	A	.	.	LowGQX	END=61333720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61333721	.	A	.	.	LowGQX	END=61333799	GT	./.
chr2	61335419	.	C	.	.	LowGQX	END=61335454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	61335455	.	T	.	.	LowGQX	END=61335518	GT	./.
chr2	61336330	.	A	.	.	LowGQX	END=61336433	GT	./.
chr2	61343110	.	T	.	.	LowGQX	END=61343209	GT	./.
chr2	61344457	.	C	.	.	LowGQX	END=61344463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61344464	.	G	.	.	LowGQX	END=61344556	GT	./.
chr2	61344589	.	A	.	.	LowGQX	END=61344613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61344614	.	G	.	.	LowGQX	.	GT	./.
chr2	61344615	.	A	.	.	LowGQX	END=61344620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61344621	.	A	.	.	LowGQX	.	GT	./.
chr2	61344622	.	A	.	.	LowGQX	END=61344626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61344627	.	G	.	.	LowGQX	.	GT	./.
chr2	61344628	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61344629	.	T	.	.	LowGQX	.	GT	./.
chr2	61344630	.	G	.	.	LowGQX	END=61344638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61344639	.	T	.	.	LowGQX	.	GT	./.
chr2	61344640	.	C	.	.	LowGQX	END=61344643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61344644	.	G	.	.	LowGQX	.	GT	./.
chr2	61344645	.	A	.	.	LowGQX	END=61344646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61344647	.	A	.	.	LowGQX	END=61344648	GT	./.
chr2	61344649	.	T	.	.	LowGQX	END=61344651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61344652	.	A	.	.	LowGQX	END=61344653	GT	./.
chr2	61344654	.	C	.	.	LowGQX	END=61344659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61344660	.	G	.	.	LowGQX	.	GT	./.
chr2	61344661	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61344662	.	A	.	.	LowGQX	END=61344663	GT	./.
chr2	61344664	.	A	.	.	LowGQX	END=61344665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61344666	.	A	.	.	LowGQX	.	GT	./.
chr2	61344667	.	G	.	.	LowGQX	END=61344671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61344672	.	G	.	.	LowGQX	.	GT	./.
chr2	61344673	.	A	.	.	LowGQX	END=61344674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61344675	.	G	.	.	LowGQX	.	GT	./.
chr2	61344676	.	G	.	.	LowGQX	END=61344677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61344678	.	A	.	.	LowGQX	.	GT	./.
chr2	61344679	.	A	.	.	LowGQX	END=61344681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61344682	.	T	.	.	LowGQX	END=61344683	GT	./.
chr2	61344684	.	T	.	.	LowGQX	END=61344688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61345158	.	T	.	.	LowGQX	END=61345257	GT	./.
chr2	61348316	.	G	.	.	LowGQX	END=61348415	GT	./.
chr2	61349229	.	T	.	.	LowGQX	END=61349328	GT	./.
chr2	61361270	.	A	.	.	LowGQX	END=61361369	GT	./.
chr2	61385013	.	A	.	.	LowGQX	END=61385037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61385038	.	T	.	.	LowGQX	END=61385147	GT	./.
chr2	61386354	.	A	.	.	LowGQX	END=61386513	GT	./.
chr2	61389628	.	G	.	.	LowGQX	END=61389744	GT	./.
chr2	61389976	.	G	.	.	LowGQX	END=61390090	GT	./.
chr2	61390186	.	G	.	.	LowGQX	END=61390367	GT	./.
chr2	61391488	.	G	.	.	LowGQX	END=61391662	GT	./.
chr2	61404612	.	C	.	.	LowGQX	END=61404764	GT	./.
chr2	61406104	.	G	.	.	LowGQX	END=61406123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61406124	.	G	.	.	LowGQX	END=61406314	GT	./.
chr2	61408450	.	T	.	.	LowGQX	END=61408549	GT	./.
chr2	61410686	.	A	.	.	LowGQX	END=61410719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	61410720	.	T	.	.	LowGQX	END=61410797	GT	./.
chr2	61411842	.	T	.	.	LowGQX	END=61411941	GT	./.
chr2	61412635	.	A	.	.	LowGQX	END=61412672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	61412673	.	A	.	.	LowGQX	END=61412755	GT	./.
chr2	61412937	.	G	.	.	LowGQX	END=61413036	GT	./.
chr2	61413557	.	G	.	.	LowGQX	END=61413656	GT	./.
chr2	61413750	.	A	.	.	LowGQX	END=61413820	GT	./.
chr2	61413821	.	T	.	.	LowGQX	END=61413923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61415235	.	T	.	.	LowGQX	END=61415776	GT	./.
chr2	61415777	.	G	.	.	LowGQX	END=61415821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	61415822	.	A	.	.	LowGQX	END=61415846	GT	./.
chr2	61416043	.	A	.	.	LowGQX	END=61416178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61416179	.	A	.	.	LowGQX	END=61416206	GT	./.
chr2	61417404	.	A	.	.	LowGQX	END=61417551	GT	./.
chr2	61417651	.	A	.	.	LowGQX	END=61417795	GT	./.
chr2	61420026	.	T	.	.	LowGQX	END=61420040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61420041	.	T	.	.	LowGQX	.	GT	./.
chr2	61420042	.	C	.	.	LowGQX	END=61420048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61420049	.	A	.	.	LowGQX	END=61420125	GT	./.
chr2	61430273	.	A	.	.	LowGQX	END=61430400	GT	./.
chr2	61431389	.	A	.	.	LowGQX	END=61431496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61431497	.	A	.	.	LowGQX	END=61431512	GT	./.
chr2	61431513	.	A	.	.	LowGQX	END=61431517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61431630	.	A	.	.	LowGQX	END=61431738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61433150	.	A	.	.	LowGQX	END=61433261	GT	./.
chr2	61433893	.	A	.	.	LowGQX	END=61434023	GT	./.
chr2	61436024	.	G	.	.	LowGQX	END=61436123	GT	./.
chr2	61438905	.	A	.	.	LowGQX	END=61439094	GT	./.
chr2	61441192	.	C	.	.	LowGQX	END=61441227	GT	./.
chr2	61441228	.	C	.	.	LowGQX	END=61441354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	61441355	.	T	.	.	LowGQX	END=61441728	GT	./.
chr2	61441729	.	G	.	.	LowGQX	END=61441730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61441731	.	G	.	.	LowGQX	.	GT	./.
chr2	61441732	.	T	.	.	LowGQX	END=61441745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61441746	.	T	.	.	LowGQX	.	GT	./.
chr2	61441747	.	T	.	.	LowGQX	END=61441760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61441761	.	A	.	.	LowGQX	.	GT	./.
chr2	61441762	.	C	.	.	LowGQX	END=61441764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61441765	.	T	.	.	LowGQX	.	GT	./.
chr2	61441766	.	G	.	.	LowGQX	END=61441772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61441773	.	G	.	.	LowGQX	.	GT	./.
chr2	61441774	.	G	.	.	LowGQX	END=61441782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61441783	.	A	.	.	LowGQX	.	GT	./.
chr2	61441784	.	C	.	.	LowGQX	END=61441785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61441786	.	G	.	.	LowGQX	.	GT	./.
chr2	61441787	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61441788	.	A	.	.	LowGQX	END=61441789	GT	./.
chr2	61441790	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	61441791	.	A	.	.	LowGQX	END=61441831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	61447443	.	A	.	.	LowGQX	END=61447594	GT	./.
chr2	61448635	.	A	.	.	LowGQX	END=61448636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61448637	.	C	.	.	LowGQX	.	GT	./.
chr2	61448638	.	T	.	.	LowGQX	END=61448656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61448657	.	T	.	.	LowGQX	.	GT	./.
chr2	61448658	.	A	.	.	LowGQX	END=61448660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61448661	.	A	.	.	LowGQX	.	GT	./.
chr2	61448662	.	G	.	.	LowGQX	END=61448687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61448688	.	T	.	.	LowGQX	.	GT	./.
chr2	61448689	.	C	.	.	LowGQX	END=61448699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61448700	.	C	.	.	LowGQX	.	GT	./.
chr2	61448701	.	T	.	.	LowGQX	END=61448712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61448713	.	G	.	.	LowGQX	END=61448714	GT	./.
chr2	61448715	.	C	.	.	LowGQX	END=61448734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61448735	.	T	.	.	LowGQX	.	GT	./.
chr2	61448736	.	G	.	.	LowGQX	END=61448743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61449727	.	A	.	.	LowGQX	END=61449826	GT	./.
chr2	61450193	.	A	.	.	LowGQX	END=61450301	GT	./.
chr2	61450358	.	T	.	.	LowGQX	END=61450457	GT	./.
chr2	61454198	.	T	.	.	LowGQX	END=61454397	GT	./.
chr2	61455768	.	A	.	.	LowGQX	END=61455867	GT	./.
chr2	61455960	.	A	.	.	LowGQX	END=61456132	GT	./.
chr2	61456676	.	T	.	.	LowGQX	END=61456775	GT	./.
chr2	61459525	.	A	.	.	LowGQX	END=61459677	GT	./.
chr2	61462963	.	T	.	.	LowGQX	END=61463062	GT	./.
chr2	61463135	.	A	.	.	LowGQX	END=61463234	GT	./.
chr2	61463284	.	T	.	.	LowGQX	END=61463383	GT	./.
chr2	61463443	.	A	.	.	LowGQX	END=61463542	GT	./.
chr2	61468693	.	A	.	.	LowGQX	END=61468771	GT	./.
chr2	61468772	.	G	.	.	LowGQX	END=61468792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61468878	.	T	.	.	LowGQX	END=61468926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61468927	.	T	.	.	LowGQX	.	GT	./.
chr2	61468928	.	A	.	.	LowGQX	END=61469001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61469002	.	T	.	.	LowGQX	END=61469028	GT	./.
chr2	61472335	.	T	.	.	LowGQX	END=61472434	GT	./.
chr2	61473457	.	A	.	.	LowGQX	END=61473614	GT	./.
chr2	61475644	.	A	.	.	LowGQX	END=61475780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61475781	.	T	.	.	LowGQX	END=61475820	GT	./.
chr2	61483457	.	C	.	.	LowGQX	END=61483616	GT	./.
chr2	61483997	.	T	.	.	LowGQX	END=61484096	GT	./.
chr2	61484166	.	A	.	.	LowGQX	END=61484265	GT	./.
chr2	61484337	.	A	.	.	LowGQX	END=61484340	GT	./.
chr2	61484341	.	G	.	.	LowGQX	END=61484438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	61484439	.	T	.	.	LowGQX	END=61484487	GT	./.
chr2	61486829	.	A	.	.	LowGQX	END=61486833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61486834	.	T	.	.	LowGQX	.	GT	./.
chr2	61486835	.	C	.	.	LowGQX	END=61486866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61486867	.	C	.	.	LowGQX	.	GT	./.
chr2	61486868	.	T	.	.	LowGQX	END=61486874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61486875	.	C	.	.	LowGQX	.	GT	./.
chr2	61486876	.	C	.	.	LowGQX	END=61486880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61486881	.	G	.	.	LowGQX	.	GT	./.
chr2	61486882	.	A	.	.	LowGQX	END=61486883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61486884	.	T	.	.	LowGQX	END=61486928	GT	./.
chr2	61492500	.	A	.	.	LowGQX	END=61492694	GT	./.
chr2	61493117	.	A	.	.	LowGQX	END=61493128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61493129	.	T	.	.	LowGQX	END=61493138	GT	./.
chr2	61493139	.	A	.	.	LowGQX	END=61493299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61493300	.	T	.	.	LowGQX	.	GT	./.
chr2	61493301	.	T	.	.	LowGQX	END=61493304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61505298	.	A	.	.	LowGQX	END=61505299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61505300	.	C	.	.	LowGQX	END=61505301	GT	./.
chr2	61505302	.	G	.	.	LowGQX	END=61505320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61505321	.	A	.	.	LowGQX	.	GT	./.
chr2	61505322	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61505323	.	A	.	.	LowGQX	.	GT	./.
chr2	61505324	.	G	.	.	LowGQX	END=61505328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61505329	.	G	.	.	LowGQX	.	GT	./.
chr2	61505330	.	T	.	.	LowGQX	END=61505334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61505335	.	G	.	.	LowGQX	.	GT	./.
chr2	61505336	.	T	.	.	LowGQX	END=61505342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61505343	.	A	.	.	LowGQX	.	GT	./.
chr2	61505344	.	C	.	.	LowGQX	END=61505354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61505355	.	A	.	.	LowGQX	.	GT	./.
chr2	61505356	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61505357	.	C	.	.	LowGQX	.	GT	./.
chr2	61505358	.	C	.	.	LowGQX	END=61505366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61505367	.	C	.	.	LowGQX	END=61505394	GT	./.
chr2	61505395	.	C	.	.	LowGQX	END=61505404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61505405	.	A	.	.	LowGQX	.	GT	./.
chr2	61505406	.	T	.	.	LowGQX	END=61505418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61505419	.	T	.	.	LowGQX	.	GT	./.
chr2	61505420	.	A	.	.	LowGQX	END=61505422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61505441	.	A	.	.	LowGQX	.	GT	./.
chr2	61505442	.	C	.	.	LowGQX	END=61505455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61505456	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	61505457	.	G	.	.	LowGQX	END=61505526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	61505527	.	G	.	.	LowGQX	END=61505600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	61507322	.	T	.	.	LowGQX	END=61507485	GT	./.
chr2	61508223	.	A	.	.	LowGQX	END=61508379	GT	./.
chr2	61510278	.	A	.	.	LowGQX	END=61510406	GT	./.
chr2	61510515	.	A	.	.	LowGQX	END=61510614	GT	./.
chr2	61512002	.	A	.	.	LowGQX	END=61512006	GT	./.
chr2	61512007	.	T	.	.	LowGQX	END=61512023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61512024	.	A	.	.	LowGQX	.	GT	./.
chr2	61512025	.	T	.	.	LowGQX	END=61512057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61512058	.	A	.	.	LowGQX	.	GT	./.
chr2	61512059	.	T	.	.	LowGQX	END=61512060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61512061	.	A	.	.	LowGQX	END=61512062	GT	./.
chr2	61512063	.	A	.	.	LowGQX	END=61512069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61512070	.	C	.	.	LowGQX	.	GT	./.
chr2	61512071	.	C	.	.	LowGQX	END=61512078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61512079	.	A	.	.	LowGQX	.	GT	./.
chr2	61512080	.	G	.	.	LowGQX	END=61512089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61512090	.	T	.	.	LowGQX	.	GT	./.
chr2	61512091	.	A	.	.	LowGQX	END=61512100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61512101	.	C	.	.	LowGQX	.	GT	./.
chr2	61515810	.	A	.	.	LowGQX	END=61516014	GT	./.
chr2	61520593	.	A	.	.	LowGQX	END=61520669	GT	./.
chr2	61520670	.	C	.	.	LowGQX	END=61520688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61520689	.	T	.	.	LowGQX	.	GT	./.
chr2	61520690	.	A	.	.	LowGQX	END=61520692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61522022	.	C	.	.	LowGQX	END=61522175	GT	./.
chr2	61522301	.	A	.	.	LowGQX	END=61522427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61523933	.	A	.	.	LowGQX	END=61524062	GT	./.
chr2	61528084	.	A	.	.	LowGQX	END=61528199	GT	./.
chr2	61528200	.	G	.	.	LowGQX	END=61528248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61528249	.	T	.	.	LowGQX	.	GT	./.
chr2	61528250	.	C	.	.	LowGQX	END=61528263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61528264	.	C	.	.	LowGQX	.	GT	./.
chr2	61528265	.	T	.	.	LowGQX	END=61528266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61528267	.	C	.	.	LowGQX	.	GT	./.
chr2	61528268	.	T	.	.	LowGQX	END=61528276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61528277	.	C	.	.	LowGQX	.	GT	./.
chr2	61528278	.	C	.	.	LowGQX	END=61528297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61528487	.	A	.	.	LowGQX	END=61528489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61528490	.	T	.	.	LowGQX	END=61528591	GT	./.
chr2	61538673	.	A	.	.	LowGQX	END=61538824	GT	./.
chr2	61538917	.	A	.	.	LowGQX	END=61539047	GT	./.
chr2	61541718	.	A	.	.	LowGQX	END=61541881	GT	./.
chr2	61542008	.	A	.	.	LowGQX	END=61542111	GT	./.
chr2	61544787	.	A	.	.	LowGQX	END=61544904	GT	./.
chr2	61546276	.	A	.	.	LowGQX	END=61546464	GT	./.
chr2	61552442	.	G	.	.	LowGQX	END=61552657	GT	./.
chr2	61558349	.	A	.	.	LowGQX	END=61558508	GT	./.
chr2	61561012	.	C	.	.	LowGQX	END=61561111	GT	./.
chr2	61566484	.	A	.	.	LowGQX	END=61566615	GT	./.
chr2	61566699	.	A	.	.	LowGQX	END=61566818	GT	./.
chr2	61570948	.	A	.	.	LowGQX	END=61571166	GT	./.
chr2	61575003	.	A	.	.	LowGQX	END=61575392	GT	./.
chr2	61575393	.	G	.	.	LowGQX	END=61575464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	61575465	.	C	A	14.89	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.45;SB=-25.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	61575466	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	61575467	.	T	.	.	LowGQX	END=61575617	GT	./.
chr2	61575889	.	A	.	.	LowGQX	END=61576023	GT	./.
chr2	61576353	.	A	.	.	LowGQX	END=61576452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61577393	.	A	.	.	LowGQX	END=61577526	GT	./.
chr2	61577701	.	A	.	.	LowGQX	END=61577830	GT	./.
chr2	61597453	.	T	.	.	LowGQX	END=61597552	GT	./.
chr2	61597624	.	T	.	.	LowGQX	END=61597697	GT	./.
chr2	61597698	.	G	.	.	LowGQX	END=61597723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61605426	.	A	.	.	LowGQX	END=61605578	GT	./.
chr2	61607302	.	A	.	.	LowGQX	END=61607498	GT	./.
chr2	61610332	.	A	.	.	LowGQX	END=61610487	GT	./.
chr2	61621986	.	A	.	.	LowGQX	END=61622139	GT	./.
chr2	61622294	.	A	.	.	LowGQX	END=61622445	GT	./.
chr2	61632841	.	A	.	.	LowGQX	END=61633005	GT	./.
chr2	61633006	.	C	.	.	LowGQX	END=61633014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61633015	.	T	.	.	LowGQX	.	GT	./.
chr2	61633016	.	T	.	.	LowGQX	END=61633029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61633030	.	A	.	.	LowGQX	.	GT	./.
chr2	61633031	.	T	.	.	LowGQX	END=61633044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61633045	.	T	.	.	LowGQX	.	GT	./.
chr2	61633046	.	C	.	.	LowGQX	END=61633177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61633178	.	G	.	.	LowGQX	.	GT	./.
chr2	61633179	.	G	.	.	LowGQX	END=61633197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61633198	.	A	.	.	LowGQX	END=61633265	GT	./.
chr2	61647875	.	G	.	.	LowGQX	END=61647974	GT	./.
chr2	61697697	.	C	.	.	LowGQX	END=61697856	GT	./.
chr2	61705953	.	T	.	.	LowGQX	END=61706103	GT	./.
chr2	61708318	.	A	.	.	LowGQX	END=61708418	GT	./.
chr2	61709513	.	A	.	.	LowGQX	.	GT	./.
chr2	61709514	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61709515	.	T	.	.	LowGQX	.	GT	./.
chr2	61709516	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61709517	.	T	.	.	LowGQX	.	GT	./.
chr2	61709518	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61709519	.	G	.	.	LowGQX	.	GT	./.
chr2	61709520	.	T	.	.	LowGQX	END=61709522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61709523	.	G	.	.	LowGQX	.	GT	./.
chr2	61709524	.	T	.	.	LowGQX	END=61709676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61710040	.	G	.	.	LowGQX	END=61710228	GT	./.
chr2	61711050	.	T	.	.	LowGQX	END=61711242	GT	./.
chr2	61712901	.	A	.	.	LowGQX	END=61713099	GT	./.
chr2	61715298	.	A	.	.	LowGQX	END=61715408	GT	./.
chr2	61715721	.	A	.	.	LowGQX	END=61715908	GT	./.
chr2	61717735	.	T	.	.	LowGQX	END=61717913	GT	./.
chr2	61719168	.	A	.	.	LowGQX	END=61719335	GT	./.
chr2	61719458	.	A	.	.	LowGQX	END=61719460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	61719461	.	A	G	6.77	LowGQX;LowQD	BaseQRankSum=0.000;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.000;QD=1.69;ReadPosRankSum=-1.026;SB=-25.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:35.73:36,0,66:60:7:0.500
chr2	61719462	.	T	.	.	LowGQX	END=61719512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	61719513	.	G	.	.	LowGQX	END=61719523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	61719524	.	A	.	.	LowGQX	END=61719526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	61719527	.	T	.	.	LowGQX	END=61719550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	61719551	.	G	.	.	LowGQX	END=61719618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	61719700	.	A	.	.	LowGQX	END=61719776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	61719777	.	C	.	.	LowGQX	END=61719799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	61719800	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr2	61719801	.	C	.	.	LowGQX	END=61719811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	61719812	.	C	.	.	LowGQX	END=61719850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	61719851	.	C	.	.	LowGQX	.	GT	./.
chr2	61719852	.	T	.	.	LowGQX	END=61719882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	61719883	.	A	.	.	LowGQX	.	GT	./.
chr2	61719884	.	C	.	.	LowGQX	END=61719888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61719889	.	A	.	.	LowGQX	.	GT	./.
chr2	61719890	.	A	.	.	LowGQX	END=61719895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61719896	.	A	.	.	LowGQX	.	GT	./.
chr2	61719897	.	C	.	.	LowGQX	END=61719898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61719899	.	T	.	.	LowGQX	.	GT	./.
chr2	61719900	.	G	.	.	LowGQX	END=61719902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61719903	.	T	.	.	LowGQX	.	GT	./.
chr2	61719904	.	T	.	.	LowGQX	END=61719919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61719920	.	A	.	.	LowGQX	.	GT	./.
chr2	61719921	.	G	.	.	LowGQX	END=61719924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61719925	.	A	.	.	LowGQX	.	GT	./.
chr2	61719926	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61719927	.	T	.	.	LowGQX	END=61719950	GT	./.
chr2	61720048	.	A	.	.	LowGQX	END=61720055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61720056	.	T	.	.	LowGQX	.	GT	./.
chr2	61720057	.	T	.	.	LowGQX	END=61720061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61720062	.	T	.	.	LowGQX	.	GT	./.
chr2	61720063	.	C	.	.	LowGQX	END=61720066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61720067	.	T	.	.	LowGQX	.	GT	./.
chr2	61720068	.	T	.	.	LowGQX	END=61720071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61720072	.	A	.	.	LowGQX	.	GT	./.
chr2	61720073	.	T	.	.	LowGQX	END=61720079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61720080	.	T	.	.	LowGQX	.	GT	./.
chr2	61720081	.	T	.	.	LowGQX	END=61720083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61720084	.	G	.	.	LowGQX	END=61720086	GT	./.
chr2	61720087	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61720088	.	T	.	.	LowGQX	.	GT	./.
chr2	61720089	.	C	.	.	LowGQX	END=61720091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61720092	.	T	.	.	LowGQX	.	GT	./.
chr2	61720093	.	A	.	.	LowGQX	END=61720100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61720101	.	T	.	.	LowGQX	.	GT	./.
chr2	61720102	.	G	.	.	LowGQX	END=61720104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61720105	.	T	.	.	LowGQX	.	GT	./.
chr2	61720106	.	T	.	.	LowGQX	END=61720107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61720108	.	T	.	.	LowGQX	.	GT	./.
chr2	61720109	.	C	.	.	LowGQX	END=61720111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61720112	.	A	.	.	LowGQX	.	GT	./.
chr2	61720113	.	C	.	.	LowGQX	END=61720114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61720115	.	A	.	.	LowGQX	.	GT	./.
chr2	61720116	.	C	.	.	LowGQX	END=61720123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61720124	.	T	.	.	LowGQX	.	GT	./.
chr2	61720125	.	G	.	.	LowGQX	END=61720138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61720139	.	A	.	.	LowGQX	.	GT	./.
chr2	61720140	.	C	.	.	LowGQX	END=61720146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61720147	.	T	.	.	LowGQX	.	GT	./.
chr2	61720148	.	T	.	.	LowGQX	END=61720171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61720172	.	A	.	.	LowGQX	.	GT	./.
chr2	61720173	.	C	.	.	LowGQX	END=61720181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61720182	.	A	.	.	LowGQX	END=61720190	GT	./.
chr2	61721027	.	A	.	.	LowGQX	END=61721116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61721117	.	A	.	.	LowGQX	END=61721212	GT	./.
chr2	61721213	.	A	.	.	LowGQX	END=61721228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61722588	.	A	.	.	LowGQX	END=61722750	GT	./.
chr2	61724012	.	A	.	.	LowGQX	END=61724033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61724034	.	T	.	.	LowGQX	.	GT	./.
chr2	61724035	.	C	.	.	LowGQX	END=61724056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61724057	.	T	.	.	LowGQX	.	GT	./.
chr2	61724058	.	G	.	.	LowGQX	END=61724090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61724091	.	T	.	.	LowGQX	END=61724124	GT	./.
chr2	61724125	.	C	.	.	LowGQX	END=61724144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61725806	.	A	.	.	LowGQX	END=61725929	GT	./.
chr2	61725975	.	T	.	.	LowGQX	END=61726074	GT	./.
chr2	61726846	.	G	.	.	LowGQX	END=61726859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	61726860	.	T	.	.	LowGQX	END=61727045	GT	./.
chr2	61729104	.	A	.	.	LowGQX	END=61729203	GT	./.
chr2	61729365	.	C	.	.	LowGQX	END=61729464	GT	./.
chr2	61749733	.	T	.	.	LowGQX	END=61749789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61749790	.	A	.	.	LowGQX	END=61749832	GT	./.
chr2	61753477	.	C	.	.	LowGQX	END=61753479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61753480	.	A	.	.	LowGQX	.	GT	./.
chr2	61753481	.	A	.	.	LowGQX	END=61753482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61753483	.	A	.	.	LowGQX	.	GT	./.
chr2	61753484	.	T	.	.	LowGQX	END=61753495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61753496	.	C	.	.	LowGQX	.	GT	./.
chr2	61753497	.	T	.	.	LowGQX	END=61753500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61753501	.	A	.	.	LowGQX	END=61753556	GT	./.
chr2	61753557	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61753558	.	C	.	.	LowGQX	.	GT	./.
chr2	61753559	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61753560	.	T	.	.	LowGQX	.	GT	./.
chr2	61753561	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61753562	.	T	.	.	LowGQX	.	GT	./.
chr2	61753563	.	T	.	.	LowGQX	END=61753573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61753574	.	G	.	.	LowGQX	.	GT	./.
chr2	61753575	.	A	.	.	LowGQX	END=61753578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61753579	.	T	.	.	LowGQX	.	GT	./.
chr2	61753580	.	T	.	.	LowGQX	END=61753602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61753603	.	C	.	.	LowGQX	.	GT	./.
chr2	61753604	.	C	.	.	LowGQX	END=61753618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61753619	.	T	.	.	LowGQX	.	GT	./.
chr2	61753620	.	C	.	.	LowGQX	END=61753625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61753626	.	A	.	.	LowGQX	.	GT	./.
chr2	61753627	.	A	.	.	LowGQX	END=61753630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61753631	.	G	.	.	LowGQX	.	GT	./.
chr2	61753632	.	T	.	.	LowGQX	END=61753651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61753652	.	C	.	.	LowGQX	.	GT	./.
chr2	61753653	.	T	.	.	LowGQX	END=61753655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61753656	.	G	.	.	LowGQX	.	GT	./.
chr2	61753657	.	C	.	.	LowGQX	END=61753658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61760905	.	A	.	.	LowGQX	END=61760917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61760918	.	C	.	.	LowGQX	.	GT	./.
chr2	61760919	.	T	.	.	LowGQX	END=61760920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61760921	.	C	.	.	LowGQX	.	GT	./.
chr2	61760922	.	A	.	.	LowGQX	END=61760941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61760942	.	C	.	.	LowGQX	.	GT	./.
chr2	61760943	.	A	.	.	LowGQX	END=61761003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	61761004	.	T	.	.	LowGQX	END=61761034	GT	./.
chr2	62051982	.	A	.	.	PASS	END=62051992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	62051993	.	C	.	.	PASS	END=62052020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	62052021	.	A	.	.	PASS	END=62052027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	62052028	.	G	.	.	PASS	END=62052087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	62052088	.	C	.	.	PASS	END=62052105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr2	62052106	.	T	.	.	PASS	END=62052178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr2	62052179	.	A	.	.	PASS	END=62052246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	62052247	.	T	.	.	PASS	END=62052254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	62052255	.	T	.	.	PASS	END=62052341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr2	62052342	.	A	.	.	PASS	END=62052451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr2	62052452	.	G	.	.	PASS	END=62052545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr2	62052546	.	G	.	.	PASS	END=62052600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	62052601	.	T	.	.	PASS	END=62052609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	62052610	.	T	.	.	PASS	END=62052630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	62052631	.	C	.	.	PASS	END=62052695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	62052696	.	T	.	.	PASS	END=62052742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	62052743	.	G	.	228.56	PASS	DP=137;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:106:137:99:60:99
chr2	62052744	.	T	.	.	PASS	END=62052754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	62052755	.	G	.	186.45	PASS	DP=133;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:104:133:99:60:99
chr2	62052756	.	T	.	.	PASS	END=62052768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	62052769	.	C	.	162.38	PASS	DP=144;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:114:143:99:60:99
chr2	62052770	.	T	.	.	PASS	END=62052774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	62052774	.	CT	C	208.67	LowQD	BaseQRankSum=1.065;DP=147;FS=2.739;HRun=15;HaplotypeScore=943.1378;MQ=60;MQ0=0;MQRankSum=0.430;QD=1.42;ReadPosRankSum=1.281;SB=-52.40	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:94,23:147:99:248,0,1748:60:99:0.197
chr2	62052775	.	T	.	288.69	LowQD	DP=156;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:118:121:99:59:99
chr2	62052776	.	T	.	.	PASS	END=62052830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:59
chr2	62052831	.	G	.	.	PASS	END=62052854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:59
chr2	62052855	.	C	.	.	PASS	END=62052888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:59
chr2	62052889	.	C	.	.	PASS	END=62052973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:59
chr2	62052974	.	G	.	.	PASS	END=62053006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	62053007	.	C	.	.	PASS	END=62053049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	62053050	.	G	.	.	PASS	END=62053099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr2	62053100	.	G	.	.	PASS	END=62053247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	62053248	.	T	.	.	PASS	END=62053347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr2	62053348	.	A	.	.	PASS	END=62053418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr2	62053419	.	T	.	.	PASS	END=62053488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr2	62053489	.	A	.	.	PASS	END=62053498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr2	62053499	.	C	.	.	PASS	END=62053546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	62053547	.	G	.	.	PASS	END=62053601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	62053602	.	T	.	.	PASS	END=62053632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	62053633	.	T	.	.	PASS	END=62053649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	62053650	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:72:60
chr2	62053651	.	T	.	.	PASS	END=62053685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	62053686	.	A	.	.	PASS	END=62053716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	62053717	.	T	.	.	PASS	END=62053743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:83:60
chr2	62053744	.	G	.	.	PASS	END=62053785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr2	62054188	.	A	.	.	PASS	END=62054342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr2	62054343	.	T	.	.	PASS	END=62054444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr2	62063094	.	A	.	153.53	PASS	DP=110;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:64:65:99:60:99
chr2	62063095	.	A	.	.	PASS	END=62063110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	62063111	.	C	.	156.54	PASS	DP=95;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:73:83:99:60:99
chr2	62063112	.	T	.	.	PASS	END=62063122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	62063123	.	C	.	156.54	PASS	DP=98;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:77:98:99:60:99
chr2	62063124	.	T	.	.	PASS	END=62063219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	62063220	.	T	.	.	PASS	END=62063295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	62063926	.	C	.	.	LowGQX	END=62063971	GT	./.
chr2	62063972	.	G	.	.	LowGQX	END=62064025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	62065672	.	C	.	.	PASS	END=62065710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr2	62065711	.	A	.	.	PASS	END=62065795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr2	62065796	.	C	.	.	PASS	END=62065840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr2	62066505	.	A	.	.	PASS	END=62066518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr2	62066519	.	A	.	.	PASS	END=62066528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:81:60
chr2	62066529	.	A	.	.	PASS	END=62066540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	62066541	.	G	.	.	PASS	END=62066578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	62066579	.	G	.	.	PASS	END=62066609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr2	62066610	.	T	.	.	PASS	END=62066623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	62066624	.	G	.	.	PASS	END=62066640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:264:99:60
chr2	62066641	.	T	.	.	PASS	END=62066782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:348:99:60
chr2	62066783	.	T	.	.	PASS	END=62066906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:266:99:60
chr2	62066907	.	C	.	.	PASS	END=62066926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:316:99:60
chr2	62066927	.	A	G	9811.48	PASS	DP=314;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=27.6511;MQ=60;MQ0=0;QD=31.25;SB=-5305.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,313:314:99:9811,761,0:60:99:1.000
chr2	62066928	.	C	.	.	PASS	END=62066982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:312:99:60
chr2	62066983	.	G	.	.	PASS	END=62067145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:375:99:60
chr2	62067146	.	C	.	.	PASS	END=62067280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:320:99:60
chr2	62067281	.	T	.	.	PASS	END=62067325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:262:99:60
chr2	62067326	.	T	.	.	PASS	END=62067453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr2	62067454	.	G	.	.	PASS	END=62067568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	62067569	.	T	.	.	PASS	END=62067627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	62067628	.	C	.	.	PASS	END=62067642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	62067643	.	A	.	.	PASS	END=62067655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	62067656	.	A	.	.	PASS	END=62067696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	62067697	.	A	.	.	PASS	END=62067700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	62067701	.	C	.	.	PASS	END=62067753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:59
chr2	62067754	.	T	.	.	PASS	END=62067760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:59
chr2	62067761	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:74:59
chr2	62067762	.	C	.	.	PASS	END=62067767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:59
chr2	62069206	.	A	.	.	PASS	END=62069243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	62069244	.	G	.	.	PASS	END=62069254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	62069255	.	A	.	.	PASS	END=62069270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	62069271	.	A	.	.	PASS	END=62069331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	62069332	.	A	.	.	PASS	END=62069357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	62069358	.	T	C	3662.35	PASS	DP=124;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=10.4161;MQ=60;MQ0=0;QD=29.54;SB=-1925.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,122:124:99:3662,280,0:60:99:1.000
chr2	62069359	.	A	.	.	PASS	END=62069422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	62069423	.	G	.	.	PASS	END=62069462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	62069463	.	A	.	.	PASS	END=62069495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	62074001	.	T	.	.	LowGQX	END=62074160	GT	./.
chr2	62080983	.	C	.	.	PASS	END=62081000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr2	62081001	.	C	.	.	PASS	END=62081011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr2	62081012	.	A	C	5579.62	PASS	BaseQRankSum=1.207;DP=211;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=71.2066;MQ=60;MQ0=0;MQRankSum=1.371;QD=26.44;ReadPosRankSum=1.026;SB=-2207.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,210:211:99:5580,436,0:60:99:0.995
chr2	62081013	.	G	.	.	PASS	END=62081134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr2	62081135	.	A	.	.	PASS	END=62081176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	62081177	.	C	.	.	PASS	END=62081214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	62081215	.	G	.	.	PASS	END=62081216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	62081217	.	A	G	3429.02	PASS	DP=108;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=9.6797;MQ=60;MQ0=0;QD=31.75;SB=-813.47	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,106:108:99:3429,277,0:60:99:1.000
chr2	62081218	.	C	.	.	PASS	END=62081254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	62081255	.	C	.	.	PASS	END=62081282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	62095785	.	C	.	.	LowGQX	END=62095884	GT	./.
chr2	62096573	.	A	.	.	LowGQX	END=62096690	GT	./.
chr2	62099215	.	A	.	.	LowGQX	END=62099453	GT	./.
chr2	62099591	.	A	.	.	LowGQX	END=62099725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	62100135	.	A	.	.	LowGQX	END=62100249	GT	./.
chr2	62100330	.	A	.	.	LowGQX	END=62100430	GT	./.
chr2	62103228	.	A	.	.	LowGQX	END=62103371	GT	./.
chr2	62104053	.	A	.	.	LowGQX	END=62104189	GT	./.
chr2	62104476	.	A	.	.	LowGQX	END=62104581	GT	./.
chr2	62104582	.	G	.	.	LowGQX	END=62104651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	62106002	.	A	.	.	LowGQX	END=62106108	GT	./.
chr2	62106109	.	C	.	.	LowGQX	END=62106148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	62107419	.	A	.	.	LowGQX	END=62107509	GT	./.
chr2	62107510	.	G	.	.	LowGQX	END=62107578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	62110589	.	C	.	.	LowGQX	END=62110741	GT	./.
chr2	62112063	.	A	.	.	LowGQX	END=62112231	GT	./.
chr2	62115514	.	A	.	.	LowGQX	END=62115564	GT	./.
chr2	62115565	.	G	.	.	LowGQX	END=62115644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	62132763	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:21:60
chr2	62132764	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	62132765	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	62132766	.	C	.	.	PASS	END=62132768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	62132769	.	G	.	.	LowGQX	END=62132770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	62132771	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	62132772	.	G	.	.	LowGQX	END=62132774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	62132775	.	G	.	.	PASS	END=62132776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	62132777	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:12:60
chr2	62132778	.	C	.	.	PASS	END=62132784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr2	62132785	.	G	.	.	PASS	END=62132786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	62132787	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr2	62132788	.	G	.	.	PASS	END=62132801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	62132802	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:12:60
chr2	62132803	.	C	.	.	PASS	END=62132809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr2	62132810	.	G	.	.	PASS	END=62132827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	62132828	.	G	.	.	PASS	END=62132840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	62132841	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:54:60
chr2	62132842	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:72:60
chr2	62132843	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:45:60
chr2	62132844	.	C	.	.	PASS	END=62132875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	62132876	.	G	.	.	PASS	END=62132877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	62132878	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:42:16:60
chr2	62132879	.	C	.	.	PASS	END=62132883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:72:60
chr2	62132884	.	T	.	.	PASS	END=62132892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr2	62132893	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:47:60
chr2	62132894	.	C	.	.	PASS	END=62132896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr2	62132897	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:54:60
chr2	62132898	.	G	.	.	PASS	END=62132920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:60
chr2	62132921	.	G	.	.	PASS	END=62133006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:77:60
chr2	62133007	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:73:60
chr2	62133008	.	T	.	.	PASS	END=62133041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:60
chr2	62133042	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:46:60
chr2	62133043	.	C	.	.	PASS	END=62133044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:72:60
chr2	62142791	.	A	.	.	LowGQX	END=62142890	GT	./.
chr2	62196104	.	A	.	.	LowGQX	END=62196217	GT	./.
chr2	62227785	.	T	.	.	PASS	END=62227798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	62227799	.	T	.	.	PASS	END=62227807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	62227808	.	T	.	.	PASS	END=62227826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	62227827	.	T	.	.	PASS	END=62227838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	62227839	.	A	.	.	PASS	END=62227846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr2	62227847	.	T	.	.	PASS	END=62227859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr2	62227860	.	T	.	.	PASS	END=62227876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr2	62227877	.	A	.	.	PASS	END=62227886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr2	62227887	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:36:60
chr2	62227888	.	C	.	.	PASS	END=62227914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr2	62227915	.	C	.	.	PASS	END=62227954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:98:60
chr2	62227955	.	C	.	.	PASS	END=62228005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	62228006	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:72:60
chr2	62228007	.	G	.	.	PASS	END=62228023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr2	62228024	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:55:60
chr2	62228025	.	T	.	.	PASS	END=62228056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr2	62228057	.	C	.	.	PASS	END=62228069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	62228070	.	C	.	.	PASS	END=62228075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr2	62228076	.	C	.	.	PASS	END=62228081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	62228082	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:33:60
chr2	62228083	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:27:60
chr2	62228084	.	C	.	.	PASS	END=62228101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr2	62228102	.	A	.	.	PASS	END=62228111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	62228112	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr2	62228113	.	G	.	.	PASS	END=62228115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	62228116	.	A	.	.	PASS	END=62228142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	62228143	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:2:60
chr2	62228144	.	T	.	.	PASS	END=62228163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	62228164	.	C	.	.	LowGQX	END=62228165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	62228166	.	A	.	.	PASS	END=62228168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	62282534	.	G	.	.	LowGQX	END=62282544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	62282545	.	A	.	.	LowGQX	.	GT	./.
chr2	62282546	.	A	.	.	LowGQX	END=62282610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	62282611	.	A	.	.	LowGQX	.	GT	./.
chr2	62282612	.	C	.	.	LowGQX	END=62282631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	62282632	.	G	.	.	LowGQX	.	GT	./.
chr2	62282633	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	62362915	.	G	.	.	PASS	END=62362933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	62362934	.	T	.	.	PASS	END=62362998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	62362999	.	G	.	.	PASS	END=62363055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	62363056	.	C	.	.	PASS	END=62363076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	62363077	.	A	.	.	PASS	END=62363092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	62363093	.	A	.	.	PASS	END=62363115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	62363116	.	T	.	.	PASS	END=62363127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr2	62448921	.	T	.	.	LowGQX	END=62449020	GT	./.
chr2	62449354	.	A	.	.	LowGQX	END=62450551	GT	./.
chr2	62728342	.	G	.	.	LowGQX	END=62728624	GT	./.
chr2	62729530	.	T	.	.	LowGQX	END=62729687	GT	./.
chr2	62729824	.	A	.	.	LowGQX	END=62729931	GT	./.
chr2	62733113	.	A	.	.	LowGQX	END=62733252	GT	./.
chr2	62733253	.	C	.	.	LowGQX	END=62733266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	62738885	.	G	.	.	LowGQX	END=62738984	GT	./.
chr2	62901175	.	C	.	.	LowGQX	END=62901274	GT	./.
chr2	62934325	.	T	.	.	LowGQX	END=62934432	GT	./.
chr2	62974509	.	A	.	.	LowGQX	END=62974608	GT	./.
chr2	62991399	.	A	.	.	LowGQX	END=62991498	GT	./.
chr2	62998455	.	T	.	.	LowGQX	END=62998554	GT	./.
chr2	63053220	.	A	.	.	LowGQX	END=63053407	GT	./.
chr2	63058121	.	T	.	.	LowGQX	END=63058331	GT	./.
chr2	63085539	.	A	.	.	LowGQX	END=63085594	GT	./.
chr2	63085595	.	G	.	.	LowGQX	END=63085614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63085615	.	C	.	.	LowGQX	.	GT	./.
chr2	63085616	.	G	.	.	LowGQX	END=63085627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63085628	.	C	.	.	LowGQX	.	GT	./.
chr2	63085629	.	A	.	.	LowGQX	END=63085633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63085634	.	G	.	.	LowGQX	.	GT	./.
chr2	63085635	.	T	.	.	LowGQX	END=63085641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63085642	.	G	.	.	LowGQX	.	GT	./.
chr2	63085643	.	A	.	.	LowGQX	END=63085647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63086302	.	A	.	.	LowGQX	END=63086428	GT	./.
chr2	63091864	.	A	.	.	LowGQX	END=63092108	GT	./.
chr2	63101479	.	A	.	.	LowGQX	END=63101669	GT	./.
chr2	63169851	.	A	.	.	LowGQX	END=63170033	GT	./.
chr2	63170912	.	C	.	.	LowGQX	END=63171011	GT	./.
chr2	63175393	.	A	.	.	LowGQX	END=63175513	GT	./.
chr2	63175514	.	T	.	.	LowGQX	END=63175732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63175733	.	C	.	.	LowGQX	.	GT	./.
chr2	63175734	.	G	.	.	LowGQX	END=63175737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63175738	.	T	.	.	LowGQX	.	GT	./.
chr2	63175739	.	T	.	.	LowGQX	END=63175740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63175741	.	G	.	.	LowGQX	.	GT	./.
chr2	63175742	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	63175743	.	G	.	.	LowGQX	END=63175749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63175750	.	A	.	.	LowGQX	.	GT	./.
chr2	63175751	.	A	.	.	LowGQX	END=63175757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63175758	.	C	.	.	LowGQX	.	GT	./.
chr2	63175759	.	A	.	.	LowGQX	END=63175791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63175792	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	63175793	.	A	.	.	LowGQX	END=63175803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63175804	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	63175805	.	C	.	.	LowGQX	END=63175808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63175809	.	C	.	.	LowGQX	.	GT	./.
chr2	63175810	.	G	.	.	LowGQX	END=63175847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63175848	.	C	.	.	LowGQX	.	GT	./.
chr2	63175849	.	A	.	.	LowGQX	END=63175855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63175856	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	63175857	.	G	.	.	LowGQX	END=63175863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63175864	.	C	.	.	LowGQX	.	GT	./.
chr2	63175865	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63175866	.	T	.	.	LowGQX	.	GT	./.
chr2	63175867	.	C	.	.	LowGQX	END=63175871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63175872	.	T	.	.	LowGQX	.	GT	./.
chr2	63175873	.	C	.	.	LowGQX	END=63175878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63175879	.	A	.	.	LowGQX	.	GT	./.
chr2	63175880	.	C	.	.	LowGQX	END=63175890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63175891	.	G	.	.	LowGQX	.	GT	./.
chr2	63175892	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63175893	.	T	.	.	LowGQX	END=63175901	GT	./.
chr2	63175902	.	G	.	.	LowGQX	END=63176051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63176052	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	63176053	.	T	.	.	LowGQX	END=63176060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63176061	.	G	.	.	LowGQX	END=63176181	GT	./.
chr2	63176182	.	G	.	.	LowGQX	END=63176271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63176272	.	C	.	.	LowGQX	.	GT	./.
chr2	63176273	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63176274	.	G	.	.	LowGQX	.	GT	./.
chr2	63176275	.	A	.	.	LowGQX	END=63176294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63176295	.	C	.	.	LowGQX	.	GT	./.
chr2	63176296	.	A	.	.	LowGQX	END=63176298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63176299	.	T	.	.	LowGQX	.	GT	./.
chr2	63182650	.	A	.	.	LowGQX	END=63182797	GT	./.
chr2	63206321	.	A	.	.	LowGQX	END=63206472	GT	./.
chr2	63215064	.	A	.	.	LowGQX	END=63215223	GT	./.
chr2	63217849	.	A	.	.	LowGQX	END=63217977	GT	./.
chr2	63220663	.	A	.	.	LowGQX	END=63220687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63220688	.	T	.	.	LowGQX	END=63220805	GT	./.
chr2	63221004	.	A	.	.	LowGQX	END=63221114	GT	./.
chr2	63223735	.	T	.	.	LowGQX	END=63223955	GT	./.
chr2	63264618	.	T	.	.	LowGQX	END=63264761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63264762	.	T	.	.	LowGQX	END=63264771	GT	./.
chr2	63265865	.	G	.	.	LowGQX	END=63265866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63265867	.	A	.	.	LowGQX	.	GT	./.
chr2	63265868	.	A	.	.	LowGQX	END=63265881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63265882	.	A	.	.	LowGQX	.	GT	./.
chr2	63265883	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63265884	.	A	.	.	LowGQX	.	GT	./.
chr2	63265885	.	G	.	.	LowGQX	END=63265964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63272199	.	A	.	.	LowGQX	END=63272317	GT	./.
chr2	63272541	.	C	.	.	LowGQX	END=63272640	GT	./.
chr2	63280073	.	T	.	.	LowGQX	END=63280078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63280079	.	C	.	.	LowGQX	.	GT	./.
chr2	63280080	.	C	.	.	LowGQX	END=63280082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63280083	.	G	.	.	LowGQX	.	GT	./.
chr2	63280084	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63280085	.	G	.	.	LowGQX	.	GT	./.
chr2	63280086	.	C	.	.	LowGQX	END=63280096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63280097	.	C	.	.	LowGQX	.	GT	./.
chr2	63280098	.	G	.	.	LowGQX	END=63280111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63280112	.	A	.	.	LowGQX	.	GT	./.
chr2	63280113	.	C	.	.	LowGQX	END=63280117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63280118	.	C	.	.	LowGQX	.	GT	./.
chr2	63280119	.	T	.	.	LowGQX	END=63280130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63280131	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	63280132	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63280133	.	C	.	.	LowGQX	.	GT	./.
chr2	63280134	.	T	.	.	LowGQX	END=63280139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63280140	.	C	.	.	LowGQX	END=63280141	GT	./.
chr2	63280142	.	A	.	.	LowGQX	END=63280144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63280145	.	A	.	.	LowGQX	.	GT	./.
chr2	63280146	.	A	.	.	LowGQX	END=63280148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63280149	.	C	.	.	LowGQX	.	GT	./.
chr2	63280150	.	C	.	.	LowGQX	END=63280153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63280154	.	A	.	.	LowGQX	.	GT	./.
chr2	63280155	.	C	.	.	LowGQX	END=63280158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63280159	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	63280160	.	T	.	.	LowGQX	END=63280162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63280163	.	A	.	.	LowGQX	.	GT	./.
chr2	63280164	.	C	.	.	LowGQX	END=63280172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63280173	.	C	.	.	LowGQX	.	GT	./.
chr2	63280174	.	C	.	.	LowGQX	END=63280188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63280189	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	63280190	.	T	.	.	LowGQX	END=63280195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63280196	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	63280197	.	C	.	.	LowGQX	END=63280201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63280202	.	A	.	.	LowGQX	END=63280203	GT	./.
chr2	63280204	.	C	.	.	LowGQX	END=63280207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63280208	.	C	.	.	LowGQX	.	GT	./.
chr2	63280209	.	C	.	.	LowGQX	END=63280211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63280212	.	G	.	.	LowGQX	.	GT	./.
chr2	63280213	.	G	.	.	LowGQX	END=63280214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63280215	.	C	.	.	LowGQX	.	GT	./.
chr2	63280216	.	T	.	.	LowGQX	END=63280224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63281067	.	T	.	.	LowGQX	END=63281117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63281118	.	G	.	.	LowGQX	END=63281132	GT	./.
chr2	63281133	.	G	.	.	LowGQX	END=63281146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63281147	.	C	.	.	LowGQX	.	GT	./.
chr2	63281148	.	C	.	.	LowGQX	END=63281152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63281153	.	A	.	.	LowGQX	.	GT	./.
chr2	63281154	.	C	.	.	LowGQX	END=63281155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63281156	.	C	.	.	LowGQX	.	GT	./.
chr2	63281157	.	G	.	.	LowGQX	END=63281166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63281167	.	C	.	.	LowGQX	.	GT	./.
chr2	63281168	.	G	.	.	LowGQX	END=63281172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63281173	.	T	.	.	LowGQX	.	GT	./.
chr2	63281174	.	C	.	.	LowGQX	END=63281291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63281292	.	G	.	.	LowGQX	.	GT	./.
chr2	63281293	.	A	.	.	LowGQX	END=63281295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63281296	.	T	.	.	LowGQX	.	GT	./.
chr2	63281297	.	G	.	.	LowGQX	END=63281301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63281302	.	T	.	.	LowGQX	.	GT	./.
chr2	63281303	.	C	.	.	LowGQX	END=63281312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63281313	.	C	.	.	LowGQX	.	GT	./.
chr2	63281314	.	T	.	.	LowGQX	END=63281321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63281322	.	T	.	.	LowGQX	.	GT	./.
chr2	63281323	.	C	.	.	LowGQX	END=63281335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63282634	.	A	.	.	LowGQX	END=63283174	GT	./.
chr2	63283175	.	G	.	.	LowGQX	END=63283249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63283250	.	G	.	.	LowGQX	END=63283269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	63283270	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	63283271	.	C	.	.	LowGQX	END=63283278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	63283279	.	A	.	.	LowGQX	END=63283423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	63283424	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	63283425	.	G	.	.	LowGQX	END=63283435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63283436	.	G	.	.	LowGQX	.	GT	./.
chr2	63283437	.	T	.	.	LowGQX	END=63283438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63283439	.	C	.	.	LowGQX	END=63283440	GT	./.
chr2	63283441	.	A	.	.	LowGQX	END=63283450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63283451	.	A	.	.	LowGQX	.	GT	./.
chr2	63283452	.	G	.	.	LowGQX	END=63283453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	63349090	.	G	.	.	PASS	END=63349143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	63349144	.	C	.	.	PASS	END=63349195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	63349196	.	A	.	.	PASS	END=63349233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	63349234	.	A	.	.	PASS	END=63349242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	63379998	.	C	.	.	PASS	END=63380080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	63380081	.	C	.	.	PASS	END=63380131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:90:59
chr2	63380579	.	C	.	.	PASS	END=63380596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	63380597	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:69:60
chr2	63380598	.	T	.	.	PASS	END=63380622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr2	63380623	.	C	.	.	PASS	END=63380643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	63380644	.	G	.	.	PASS	END=63380760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	63401754	.	G	.	.	PASS	END=63401767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	63401768	.	C	.	.	PASS	END=63401850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	63401851	.	G	.	.	PASS	END=63401956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr2	63401957	.	T	.	.	PASS	END=63401972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	63401973	.	G	A	1758.86	PASS	BaseQRankSum=0.288;DP=168;Dels=0.00;FS=3.948;HRun=4;HaplotypeScore=5.6815;MQ=60;MQ0=0;MQRankSum=-1.649;QD=10.47;ReadPosRankSum=-0.230;SB=-639.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:92,75:168:99:1789,0,2452:60:99:0.449
chr2	63401974	.	A	.	.	PASS	END=63402018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	63456875	.	T	.	.	LowGQX	END=63457034	GT	./.
chr2	63486391	.	A	.	.	PASS	END=63486428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr2	63486429	.	C	T	355.11	PASS	BaseQRankSum=0.717;DP=22;Dels=0.00;FS=1.792;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=0.990;QD=16.14;ReadPosRankSum=-0.034;SB=-155.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:8,14:22:99:385,0,210:60:99:0.636
chr2	63486430	.	G	.	.	PASS	END=63486441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr2	63486442	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:9:60
chr2	63486443	.	A	.	.	PASS	END=63486453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	63486454	.	T	.	.	PASS	END=63486478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr2	63486479	.	A	.	.	PASS	END=63486534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr2	63486535	.	A	.	.	PASS	END=63486541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr2	63486542	.	A	.	.	PASS	END=63486570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	63486571	.	T	.	.	PASS	END=63486595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	63540332	.	C	.	.	PASS	END=63540367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr2	63540368	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:66:60
chr2	63540369	.	T	.	.	PASS	END=63540380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr2	63540381	.	A	.	.	PASS	END=63540394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	63540395	.	A	.	.	PASS	END=63540478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	63540479	.	T	.	.	PASS	END=63540497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr2	63596541	.	C	.	.	LowGQX	END=63596640	GT	./.
chr2	63605470	.	C	.	.	PASS	END=63605489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	63605490	.	T	.	.	PASS	END=63605505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	63605506	.	A	.	.	PASS	END=63605618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	63605619	.	G	.	.	PASS	END=63605639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	63605640	.	C	.	.	PASS	END=63605647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	63605648	.	T	.	.	PASS	END=63605658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	63605659	.	C	.	.	PASS	END=63605680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	63605681	.	A	.	.	PASS	END=63605693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr2	63605694	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:60:60
chr2	63605695	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:99:60
chr2	63608990	.	C	.	.	PASS	END=63609019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	63609020	.	G	.	.	PASS	END=63609055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	63609056	.	T	.	.	PASS	END=63609170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	63609171	.	A	.	.	PASS	END=63609212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	63609213	.	T	.	.	PASS	END=63609241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	63609242	.	A	.	.	PASS	END=63609276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	63609277	.	A	.	.	PASS	END=63609280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	63631119	.	T	.	.	PASS	END=63631138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr2	63631139	.	C	.	.	PASS	END=63631169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	63631170	.	T	.	.	PASS	END=63631176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr2	63631177	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:56:60
chr2	63631178	.	C	.	.	PASS	END=63631203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	63631204	.	C	.	.	PASS	END=63631228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	63631229	.	G	.	.	PASS	END=63631247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	63631248	.	T	.	.	PASS	END=63631275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	63631276	.	C	.	.	PASS	END=63631351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	63631352	.	G	.	.	PASS	END=63631395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	63631396	.	G	.	.	PASS	END=63631486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	63631487	.	T	.	.	PASS	END=63631592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	63631593	.	C	.	.	PASS	END=63631635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	63631636	.	A	.	.	PASS	END=63631657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	63631658	.	T	.	.	PASS	END=63631685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	63631686	.	T	.	.	PASS	END=63631704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	63631705	.	A	.	.	PASS	END=63631714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr2	63631715	.	T	.	.	PASS	END=63631716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr2	63631717	.	T	.	.	PASS	END=63631729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr2	63631730	.	A	.	.	PASS	END=63631735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr2	63631736	.	T	.	.	PASS	END=63631744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr2	63631745	.	A	.	.	PASS	END=63631771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	63631772	.	T	.	.	PASS	END=63631773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr2	63631774	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:2:60
chr2	63631775	.	G	.	.	PASS	END=63631779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	63631780	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:36:60
chr2	63631781	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	63631782	.	G	.	.	PASS	END=63631784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	63631785	.	C	.	.	LowGQX	END=63631796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	63631797	.	T	.	.	PASS	END=63631798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	63631799	.	A	.	.	LowGQX	END=63631800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	63631801	.	A	.	.	PASS	END=63631805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	63631806	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	63631807	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr2	63631808	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	63631809	.	C	.	.	PASS	END=63631811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	63631812	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr2	63631813	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:36:60
chr2	63631814	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	63631815	.	C	.	.	PASS	END=63631820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	63631821	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	63631822	.	A	.	.	PASS	END=63631823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr2	63631824	.	A	.	.	LowGQX	END=63631825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr2	63631826	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	63631827	.	C	.	.	LowGQX	END=63631830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	63631831	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr2	63631832	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr2	63631833	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr2	63631834	.	T	.	.	LowGQX	END=63631837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr2	63631838	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:36:60
chr2	63631839	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr2	63631840	.	T	.	.	PASS	END=63631842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr2	63631843	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr2	63660828	.	T	.	.	LowGQX	END=63660850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr2	63660851	.	A	.	.	LowGQX	END=63660853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	63660854	.	A	.	.	LowGQX	END=63660871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	63660872	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr2	63660873	.	A	.	.	LowGQX	END=63660877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	63660878	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:1:60
chr2	63660879	.	C	.	.	LowGQX	END=63660886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	63660887	.	T	.	.	PASS	END=63660888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	63660889	.	C	.	.	LowGQX	END=63660892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	63660893	.	G	.	.	PASS	END=63660899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	63660900	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:39:60
chr2	63660901	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:54:60
chr2	63660902	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:15:60
chr2	63660903	.	C	.	.	PASS	END=63660918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	63660919	.	G	.	.	PASS	END=63660926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr2	63660927	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:42:60
chr2	63660928	.	T	.	.	PASS	END=63660957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr2	63660958	.	G	.	.	PASS	END=63660977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr2	63660978	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:72:60
chr2	63660979	.	C	.	.	PASS	END=63661005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr2	63661006	.	C	.	.	PASS	END=63661119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:96:60
chr2	63661120	.	A	.	.	PASS	END=63661121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	63664504	.	C	.	.	PASS	END=63664534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr2	63664535	.	A	.	.	PASS	END=63664562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	63664563	.	C	.	.	PASS	END=63664618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	63664619	.	G	.	.	PASS	END=63664654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	63664655	.	A	.	.	PASS	END=63664706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	63664707	.	T	.	.	PASS	END=63664739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	63664957	.	A	.	.	PASS	END=63664959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	63664960	.	G	.	.	PASS	END=63664969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	63664970	.	G	.	.	LowGQX	END=63664971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr2	63664972	.	T	.	.	PASS	END=63664985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	63664986	.	T	.	.	LowGQX	END=63665009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	63665010	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr2	63665011	.	A	.	.	LowGQX	END=63665021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	63665022	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr2	63665023	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr2	63665024	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr2	63665025	.	T	.	.	LowGQX	END=63665030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	63665031	.	T	.	.	LowGQX	END=63665034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	63665035	.	A	.	.	LowGQX	END=63665039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	63665040	.	T	.	.	LowGQX	END=63665041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	63665042	.	T	.	.	LowGQX	END=63665045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	63665046	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr2	63665047	.	C	.	.	LowGQX	END=63665056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	63666840	.	T	.	.	PASS	END=63666852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	63666853	.	T	.	.	PASS	END=63666889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	63666890	.	C	.	.	PASS	END=63666989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	63666990	.	C	.	.	PASS	END=63667005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	63667006	.	C	.	.	PASS	END=63667031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	63667032	.	G	.	.	PASS	END=63667048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	63667049	.	T	.	.	PASS	END=63667056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	63711687	.	G	.	.	PASS	END=63711702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	63711703	.	G	.	.	PASS	END=63711822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr2	63711823	.	G	.	.	PASS	END=63711848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	63712000	.	T	.	.	PASS	END=63712047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	63712048	.	T	.	.	PASS	END=63712172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	63713588	.	A	.	.	PASS	END=63713661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	63713662	.	T	.	.	PASS	END=63713669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	63713670	.	G	.	.	PASS	END=63713771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	63714530	.	G	.	.	PASS	END=63714645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	63714646	.	T	.	.	PASS	END=63714679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	63719939	.	A	.	.	PASS	END=63719982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	63719983	.	C	.	.	PASS	END=63719999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	63720000	.	T	.	.	PASS	END=63720125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	63798461	.	G	.	.	LowGQX	END=63798560	GT	./.
chr2	63798680	.	T	.	.	LowGQX	END=63798779	GT	./.
chr2	63815280	.	T	.	.	PASS	END=63815393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	63815394	.	C	.	.	PASS	END=63815425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	63815426	.	A	.	.	PASS	END=63815446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	63815447	.	C	.	.	PASS	END=63815456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	63816130	.	C	.	.	PASS	END=63816223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	63816224	.	C	.	.	PASS	END=63816229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	63816440	.	T	.	.	PASS	END=63816525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	63816526	.	A	.	.	PASS	END=63816539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	63820710	.	G	.	.	LowGQX	END=63820809	GT	./.
chr2	63821385	.	T	.	.	PASS	END=63821390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr2	63821391	.	A	.	.	PASS	END=63821409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr2	63821410	.	A	.	.	PASS	END=63821433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	63821434	.	A	.	.	PASS	END=63821447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr2	63821448	.	A	.	.	PASS	END=63821457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	63821458	.	G	.	.	PASS	END=63821484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr2	63821620	.	A	.	.	PASS	END=63821639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	63821640	.	C	.	.	PASS	END=63821722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	63822504	.	G	.	.	PASS	END=63822526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	63822527	.	C	.	.	PASS	END=63822598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	63822599	.	G	.	.	PASS	END=63822620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	63822621	.	A	.	.	PASS	END=63822655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	63824531	.	A	.	.	PASS	END=63824550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr2	63824551	.	A	.	.	PASS	END=63824684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr2	63824685	.	A	.	.	PASS	END=63824709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	63824710	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:120:99:60
chr2	63826302	.	A	.	.	PASS	END=63826410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	63826411	.	C	.	.	PASS	END=63826428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	63831828	.	A	.	.	PASS	END=63831851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	63831852	.	C	.	.	PASS	END=63831885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	63831886	.	A	.	.	PASS	END=63832002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr2	63832003	.	C	.	.	PASS	END=63832008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr2	63832412	.	A	.	.	PASS	END=63832417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	63832418	.	T	.	.	PASS	END=63832453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	63832454	.	A	.	.	PASS	END=63832529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	63833068	.	T	.	.	PASS	END=63833110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	63833111	.	C	.	.	PASS	END=63833148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	63833149	.	C	.	.	PASS	END=63833167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	63833994	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:72:60
chr2	63833995	.	G	.	.	PASS	END=63834026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	63834027	.	C	.	.	PASS	END=63834123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	64069280	.	A	.	.	LowGQX	END=64069292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64069293	.	G	.	.	LowGQX	.	GT	./.
chr2	64069294	.	C	.	.	LowGQX	END=64069296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64069297	.	G	.	.	LowGQX	.	GT	./.
chr2	64069298	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64069299	.	G	.	.	LowGQX	END=64069301	GT	./.
chr2	64069302	.	T	.	.	LowGQX	END=64069306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64069307	.	C	.	.	LowGQX	.	GT	./.
chr2	64069308	.	T	.	.	LowGQX	END=64069312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64069313	.	C	.	.	LowGQX	.	GT	./.
chr2	64069314	.	C	.	.	LowGQX	END=64069324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64069325	.	G	.	.	LowGQX	.	GT	./.
chr2	64069326	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64069327	.	G	.	.	LowGQX	END=64069328	GT	./.
chr2	64069329	.	T	.	.	LowGQX	END=64069333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64069334	.	A	.	.	LowGQX	END=64069359	GT	./.
chr2	64069360	.	A	.	.	LowGQX	END=64069379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64069499	.	G	.	.	LowGQX	END=64069510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64069511	.	A	.	.	LowGQX	END=64069598	GT	./.
chr2	64069654	.	T	.	.	LowGQX	END=64069753	GT	./.
chr2	64082507	.	G	.	.	LowGQX	END=64082606	GT	./.
chr2	64082748	.	T	.	.	LowGQX	END=64082796	GT	./.
chr2	64082797	.	T	.	.	LowGQX	END=64082881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64082882	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	64082883	.	C	.	.	LowGQX	END=64082889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64082890	.	G	.	.	LowGQX	END=64082907	GT	./.
chr2	64083438	.	A	.	.	LowGQX	END=64083569	GT	./.
chr2	64083887	.	A	.	.	LowGQX	END=64083888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64083889	.	G	.	.	LowGQX	.	GT	./.
chr2	64083890	.	T	.	.	LowGQX	END=64083892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64083893	.	G	.	.	LowGQX	.	GT	./.
chr2	64083894	.	C	.	.	LowGQX	END=64083930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64083931	.	T	.	.	LowGQX	.	GT	./.
chr2	64083932	.	C	.	.	LowGQX	END=64083935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	64083936	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	64083937	.	A	.	.	LowGQX	END=64083938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64083939	.	A	.	.	LowGQX	.	GT	./.
chr2	64083940	.	A	.	.	LowGQX	END=64083977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64083978	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	64083979	.	A	.	.	LowGQX	END=64083986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64084655	.	T	.	.	LowGQX	END=64084754	GT	./.
chr2	64084961	.	A	.	.	LowGQX	END=64085072	GT	./.
chr2	64089928	.	T	.	.	LowGQX	END=64090027	GT	./.
chr2	64109598	.	A	.	.	LowGQX	END=64109787	GT	./.
chr2	64111092	.	A	.	.	LowGQX	END=64111281	GT	./.
chr2	64112721	.	A	.	.	LowGQX	END=64113022	GT	./.
chr2	64113473	.	A	.	.	LowGQX	END=64113674	GT	./.
chr2	64114534	.	A	.	.	LowGQX	END=64114780	GT	./.
chr2	64117163	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64117164	.	T	.	.	LowGQX	.	GT	./.
chr2	64117165	.	T	.	.	LowGQX	END=64117204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64117205	.	T	.	.	LowGQX	.	GT	./.
chr2	64117206	.	T	.	.	LowGQX	END=64117215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64117216	.	T	.	.	LowGQX	.	GT	./.
chr2	64117217	.	T	.	.	LowGQX	END=64117286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64117287	.	G	.	.	LowGQX	END=64117321	GT	./.
chr2	64118252	.	A	.	.	LowGQX	END=64118363	GT	./.
chr2	64120452	.	C	.	.	LowGQX	END=64120551	GT	./.
chr2	64120562	.	C	.	.	LowGQX	END=64120671	GT	./.
chr2	64124568	.	C	.	.	LowGQX	END=64124727	GT	./.
chr2	64126606	.	A	.	.	LowGQX	END=64126674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64126675	.	T	.	.	LowGQX	.	GT	./.
chr2	64126676	.	T	.	.	LowGQX	END=64126717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64139417	.	C	.	.	LowGQX	END=64139569	GT	./.
chr2	64139622	.	A	.	.	LowGQX	END=64139841	GT	./.
chr2	64140351	.	C	.	.	LowGQX	END=64140450	GT	./.
chr2	64141264	.	A	.	.	LowGQX	END=64141423	GT	./.
chr2	64144016	.	G	.	.	LowGQX	END=64144115	GT	./.
chr2	64147015	.	A	.	.	LowGQX	END=64147131	GT	./.
chr2	64147578	.	A	.	.	LowGQX	END=64147763	GT	./.
chr2	64148338	.	A	.	.	LowGQX	END=64148471	GT	./.
chr2	64160805	.	A	.	.	LowGQX	END=64161149	GT	./.
chr2	64169597	.	A	.	.	LowGQX	END=64169756	GT	./.
chr2	64171652	.	G	.	.	LowGQX	END=64171811	GT	./.
chr2	64174465	.	A	.	.	LowGQX	END=64174626	GT	./.
chr2	64176119	.	C	.	.	LowGQX	END=64176299	GT	./.
chr2	64189190	.	A	.	.	LowGQX	END=64189579	GT	./.
chr2	64192927	.	C	.	.	LowGQX	END=64193102	GT	./.
chr2	64195999	.	A	.	.	LowGQX	END=64196158	GT	./.
chr2	64199290	.	A	.	.	LowGQX	END=64199389	GT	./.
chr2	64202083	.	C	.	.	LowGQX	END=64202182	GT	./.
chr2	64208778	.	A	.	.	LowGQX	END=64209023	GT	./.
chr2	64210996	.	A	.	.	LowGQX	END=64211042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64211043	.	G	.	.	LowGQX	END=64211135	GT	./.
chr2	64321834	.	T	.	.	LowGQX	END=64322404	GT	./.
chr2	64323257	.	A	.	.	LowGQX	END=64323357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64323358	.	G	.	.	LowGQX	.	GT	./.
chr2	64323359	.	A	.	.	LowGQX	END=64323367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64323368	.	C	.	.	LowGQX	.	GT	./.
chr2	64323369	.	G	.	.	LowGQX	END=64323380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64323381	.	C	.	.	LowGQX	END=64323449	GT	./.
chr2	64323545	.	A	.	.	LowGQX	END=64323658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64323659	.	A	.	.	LowGQX	END=64323746	GT	./.
chr2	64327530	.	A	.	.	LowGQX	END=64327543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64327544	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	64327545	.	G	.	.	LowGQX	END=64327552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64327553	.	G	.	.	LowGQX	.	GT	./.
chr2	64327554	.	T	.	.	LowGQX	END=64327564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64327565	.	T	.	.	LowGQX	END=64327566	GT	./.
chr2	64327567	.	C	.	.	LowGQX	END=64327584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64327585	.	C	.	.	LowGQX	END=64327586	GT	./.
chr2	64327587	.	C	.	.	LowGQX	END=64327589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64327590	.	G	.	.	LowGQX	END=64327591	GT	./.
chr2	64327592	.	T	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr2	64327593	.	A	.	.	LowGQX	END=64327689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64331833	.	A	.	.	LowGQX	END=64331868	GT	./.
chr2	64331869	.	G	.	.	LowGQX	END=64331965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64331966	.	T	.	.	LowGQX	.	GT	./.
chr2	64335360	.	T	.	.	LowGQX	END=64335459	GT	./.
chr2	64681588	.	A	.	.	LowGQX	END=64681747	GT	./.
chr2	64682464	.	A	.	.	LowGQX	END=64682481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64682482	.	T	.	.	LowGQX	.	GT	./.
chr2	64682483	.	A	.	.	LowGQX	END=64682512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64682513	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	64682514	.	T	.	.	LowGQX	END=64682523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64682524	.	A	.	.	LowGQX	END=64682563	GT	./.
chr2	64682718	.	T	.	.	LowGQX	END=64682817	GT	./.
chr2	64683392	.	C	.	.	LowGQX	END=64683498	GT	./.
chr2	64683499	.	C	.	.	LowGQX	END=64683561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64683562	.	T	.	.	LowGQX	.	GT	./.
chr2	64683563	.	C	.	.	LowGQX	END=64683581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64683582	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	64683583	.	C	.	.	LowGQX	END=64683601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64685417	.	A	.	.	LowGQX	END=64685564	GT	./.
chr2	64778607	.	C	.	.	LowGQX	END=64779169	GT	./.
chr2	64779170	.	G	.	.	LowGQX	END=64779258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64779259	.	T	.	.	LowGQX	END=64780545	GT	./.
chr2	64794694	.	A	.	.	LowGQX	END=64794849	GT	./.
chr2	64796174	.	G	.	.	LowGQX	END=64796198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64796199	.	T	.	.	LowGQX	.	GT	./.
chr2	64796200	.	T	.	.	LowGQX	END=64796201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64796202	.	A	.	.	LowGQX	.	GT	./.
chr2	64796203	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64796204	.	G	.	.	LowGQX	.	GT	./.
chr2	64796205	.	G	.	.	LowGQX	END=64796211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64796212	.	C	.	.	LowGQX	.	GT	./.
chr2	64796213	.	A	.	.	LowGQX	END=64796221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64796222	.	G	.	.	LowGQX	.	GT	./.
chr2	64796223	.	C	.	.	LowGQX	END=64796224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64796225	.	G	.	.	LowGQX	.	GT	./.
chr2	64796226	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64796227	.	G	.	.	LowGQX	.	GT	./.
chr2	64796228	.	A	.	.	LowGQX	END=64796258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64796259	.	T	.	.	LowGQX	.	GT	./.
chr2	64796260	.	A	.	.	LowGQX	END=64796265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64796266	.	G	.	.	LowGQX	.	GT	./.
chr2	64796267	.	A	.	.	LowGQX	END=64796276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64796277	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	64796278	.	T	.	.	LowGQX	END=64796286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	64796287	.	C	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr2	64796288	.	A	.	.	LowGQX	END=64796340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64796341	.	A	.	.	LowGQX	.	GT	./.
chr2	64796342	.	C	.	.	LowGQX	END=64796345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64796346	.	A	.	.	LowGQX	.	GT	./.
chr2	64796347	.	A	.	.	LowGQX	END=64796354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64796736	.	T	.	.	LowGQX	END=64796740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	64796741	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	64796742	.	C	.	.	LowGQX	END=64796755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64796756	.	G	.	.	LowGQX	.	GT	./.
chr2	64796757	.	C	.	.	LowGQX	END=64796759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64796760	.	T	.	.	LowGQX	END=64796835	GT	./.
chr2	64800078	.	A	.	.	LowGQX	END=64800204	GT	./.
chr2	64806601	.	T	.	.	LowGQX	END=64806700	GT	./.
chr2	64808316	.	A	.	.	LowGQX	END=64808415	GT	./.
chr2	64812504	.	C	.	.	LowGQX	END=64812681	GT	./.
chr2	64819017	.	A	.	.	LowGQX	END=64819134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	64819135	.	C	.	.	LowGQX	END=64819171	GT	./.
chr2	64863059	.	T	.	.	LowGQX	END=64864007	GT	./.
chr2	65131500	.	C	.	.	LowGQX	END=65131754	GT	./.
chr2	65132125	.	C	.	.	LowGQX	END=65132269	GT	./.
chr2	65159444	.	C	.	.	LowGQX	END=65159543	GT	./.
chr2	65200569	.	C	.	.	LowGQX	END=65200617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65200618	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	65200619	.	A	.	.	LowGQX	END=65200636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65200637	.	A	.	.	LowGQX	END=65200668	GT	./.
chr2	65216776	.	C	.	.	LowGQX	END=65217306	GT	./.
chr2	65228554	.	A	.	.	LowGQX	END=65228557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65228558	.	A	.	.	LowGQX	END=65228653	GT	./.
chr2	65231069	.	T	.	.	LowGQX	END=65231168	GT	./.
chr2	65237729	.	A	.	.	LowGQX	END=65237899	GT	./.
chr2	65243572	.	A	.	.	LowGQX	END=65243775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	65243776	.	C	.	.	LowGQX	END=65243809	GT	./.
chr2	65245203	.	A	.	.	LowGQX	END=65245401	GT	./.
chr2	65245677	.	A	.	.	LowGQX	END=65245815	GT	./.
chr2	65248044	.	A	.	.	LowGQX	END=65248282	GT	./.
chr2	65296577	.	C	.	.	PASS	END=65296600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	65296601	.	C	.	.	PASS	END=65296651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	65296652	.	G	.	.	PASS	END=65296687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr2	65296688	.	T	.	.	PASS	END=65296754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr2	65296755	.	A	.	.	PASS	END=65296909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:274:99:60
chr2	65296910	.	A	.	.	PASS	END=65296937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr2	65298586	.	A	.	.	PASS	END=65298614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr2	65298615	.	G	.	.	PASS	END=65298646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:263:99:60
chr2	65298646	.	GAAC	G	6652.25	PASS	BaseQRankSum=0.843;DP=276;FS=0.000;HRun=0;HaplotypeScore=361.2477;MQ=60;MQ0=0;MQRankSum=1.596;QD=24.10;ReadPosRankSum=1.867;SB=-3066.54	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:143,133:276:99:6652,0,7021:60:99:0.482
chr2	65298647	.	A	.	361.05	PASS	DP=278;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:145:145:99:60:99
chr2	65298648	.	A	.	367.06	PASS	DP=278;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:144:145:99:60:99
chr2	65298649	.	C	.	376.11	PASS	DP=278;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:144:145:99:60:99
chr2	65298650	.	A	.	.	PASS	END=65298716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:281:99:60
chr2	65298717	.	G	.	.	PASS	END=65298886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:295:99:60
chr2	65298887	.	T	.	.	PASS	END=65299297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:282:99:60
chr2	65299298	.	C	A	3161.85	PASS	BaseQRankSum=1.066;DP=300;Dels=0.00;FS=3.374;HRun=2;HaplotypeScore=41.7573;MQ=60;MQ0=0;MQRankSum=-0.147;QD=10.54;ReadPosRankSum=3.179;SB=-1557.21	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:166,134:300:99:3192,0,4477:60:99:0.447
chr2	65299299	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:294:99:60
chr2	65299300	.	G	C	3526.25	PASS	BaseQRankSum=2.645;DP=295;Dels=0.00;FS=20.855;HRun=3;HaplotypeScore=37.0228;MQ=60;MQ0=0;MQRankSum=-0.905;QD=11.95;ReadPosRankSum=2.837;SB=-1360.88	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:157,137:295:99:3526,0,3883:60:99:0.466
chr2	65299301	.	C	.	.	PASS	END=65299400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:258:99:60
chr2	65299401	.	T	.	.	PASS	END=65299674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr2	65299675	.	A	.	.	PASS	END=65299801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr2	65299802	.	T	.	.	PASS	END=65299894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	65299895	.	T	.	.	PASS	END=65299955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	65299956	.	A	.	.	PASS	END=65300115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	65300116	.	T	.	.	PASS	END=65300129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	65300130	.	G	.	.	PASS	END=65300161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	65300162	.	C	.	.	PASS	END=65300180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	65300181	.	A	.	.	PASS	END=65300221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr2	65300222	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:69:60
chr2	65300223	.	T	.	.	PASS	END=65300229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr2	65300230	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:72:60
chr2	65300231	.	A	.	.	PASS	END=65300237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr2	65300238	.	T	.	.	PASS	END=65300250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr2	65300251	.	A	.	.	PASS	END=65300254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr2	65300255	.	A	.	.	PASS	END=65300262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr2	65300263	.	C	.	.	PASS	END=65300266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	65300267	.	T	.	.	PASS	END=65300274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	65300275	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr2	65300276	.	G	.	.	PASS	END=65300279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	65301414	.	A	.	.	PASS	END=65301532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	65301533	.	T	.	.	PASS	END=65301549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	65301550	.	T	.	.	PASS	END=65301564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr2	65301565	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:72:60
chr2	65301566	.	T	.	.	PASS	END=65301569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr2	65301570	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:49:60
chr2	65301571	.	T	.	.	PASS	END=65301612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr2	65301613	.	T	.	.	PASS	END=65301633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr2	65301634	.	T	.	.	PASS	END=65301643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr2	65301644	.	C	.	.	PASS	END=65301656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	65301657	.	T	.	.	PASS	END=65301670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	65305000	.	A	.	.	PASS	END=65305067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	65305068	.	C	.	.	PASS	END=65305100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	65309668	.	A	.	.	PASS	END=65309681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr2	65309682	.	T	.	.	PASS	END=65309821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr2	65309822	.	C	.	.	PASS	END=65309832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr2	65309833	.	G	.	.	PASS	END=65309841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	65315626	.	T	.	.	LowGQX	END=65315824	GT	./.
chr2	65316072	.	C	.	.	LowGQX	END=65316201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65316202	.	C	.	.	LowGQX	.	GT	./.
chr2	65316203	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65316204	.	C	.	.	LowGQX	.	GT	./.
chr2	65318115	.	A	.	.	LowGQX	END=65318166	GT	./.
chr2	65318167	.	A	.	.	LowGQX	END=65318170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65318171	.	G	.	.	LowGQX	END=65318172	GT	./.
chr2	65318173	.	A	.	.	LowGQX	END=65318208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65318209	.	C	.	.	LowGQX	.	GT	./.
chr2	65318210	.	C	.	.	LowGQX	END=65318214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65325103	.	A	.	.	LowGQX	END=65325149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65325150	.	T	.	.	LowGQX	END=65325202	GT	./.
chr2	65331854	.	C	.	.	LowGQX	END=65331953	GT	./.
chr2	65331988	.	G	.	.	LowGQX	END=65332087	GT	./.
chr2	65332424	.	A	.	.	LowGQX	END=65332583	GT	./.
chr2	65333467	.	C	.	.	LowGQX	.	GT	./.
chr2	65333468	.	T	.	.	LowGQX	END=65333473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65333474	.	G	.	.	LowGQX	END=65333546	GT	./.
chr2	65333547	.	A	.	.	LowGQX	END=65333566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65341226	.	C	.	.	LowGQX	END=65341325	GT	./.
chr2	65356988	.	G	.	.	LowGQX	END=65357087	GT	./.
chr2	65454958	.	G	.	.	LowGQX	END=65455171	GT	./.
chr2	65466934	.	T	.	.	LowGQX	END=65466952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65466953	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	65466954	.	T	.	.	LowGQX	END=65467098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65469140	.	T	.	.	LowGQX	END=65469239	GT	./.
chr2	65469726	.	A	.	.	LowGQX	END=65469825	GT	./.
chr2	65473656	.	A	.	.	LowGQX	END=65473712	GT	./.
chr2	65473713	.	A	.	.	LowGQX	END=65473875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65478148	.	T	.	.	LowGQX	END=65478247	GT	./.
chr2	65480860	.	A	.	.	LowGQX	END=65480882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65480883	.	T	.	.	LowGQX	.	GT	./.
chr2	65480884	.	A	.	.	LowGQX	END=65480904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65480905	.	T	.	.	LowGQX	END=65481000	GT	./.
chr2	65482677	.	A	.	.	LowGQX	END=65482830	GT	./.
chr2	65488379	.	A	.	.	LowGQX	END=65488528	GT	./.
chr2	65492175	.	A	.	.	LowGQX	END=65492378	GT	./.
chr2	65495696	.	A	.	.	LowGQX	END=65495870	GT	./.
chr2	65540633	.	A	.	.	LowGQX	END=65540703	GT	./.
chr2	65540704	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65540705	.	G	.	.	LowGQX	.	GT	./.
chr2	65540706	.	G	.	.	LowGQX	END=65540709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65540710	.	G	.	.	LowGQX	END=65540711	GT	./.
chr2	65540712	.	A	.	.	LowGQX	END=65540713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65540714	.	C	.	.	LowGQX	.	GT	./.
chr2	65540715	.	A	.	.	LowGQX	END=65540722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65540723	.	C	.	.	LowGQX	END=65540724	GT	./.
chr2	65540725	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65540726	.	G	.	.	LowGQX	END=65540729	GT	./.
chr2	65540730	.	C	.	.	LowGQX	END=65540732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65540733	.	G	.	.	LowGQX	.	GT	./.
chr2	65540734	.	G	.	.	LowGQX	END=65540753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	65540754	.	C	.	.	LowGQX	END=65540755	GT	./.
chr2	65540756	.	A	.	.	LowGQX	END=65540759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	65540760	.	A	.	.	LowGQX	.	GT	./.
chr2	65540761	.	C	.	.	LowGQX	END=65540762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	65540763	.	G	.	.	LowGQX	END=65540765	GT	./.
chr2	65540766	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	65540767	.	G	.	.	LowGQX	.	GT	./.
chr2	65540768	.	C	.	.	LowGQX	END=65540769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	65540770	.	A	.	.	LowGQX	.	GT	./.
chr2	65540771	.	A	.	.	LowGQX	END=65540776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	65540777	.	T	.	.	LowGQX	.	GT	./.
chr2	65540778	.	C	.	.	LowGQX	END=65540781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	65540782	.	G	.	.	LowGQX	END=65540783	GT	./.
chr2	65540784	.	T	.	.	LowGQX	END=65540787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	65540788	.	A	.	.	LowGQX	.	GT	./.
chr2	65540789	.	T	.	.	LowGQX	END=65540790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	65540791	.	G	.	.	LowGQX	.	GT	./.
chr2	65540792	.	C	.	.	LowGQX	END=65540797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	65540798	.	C	.	.	LowGQX	.	GT	./.
chr2	65540799	.	A	.	.	LowGQX	END=65540802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	65540803	.	G	.	.	LowGQX	.	GT	./.
chr2	65540804	.	T	.	.	LowGQX	END=65540820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	65540821	.	G	.	.	LowGQX	.	GT	./.
chr2	65540822	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	65540823	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	65540824	.	G	.	.	LowGQX	.	GT	./.
chr2	65540825	.	T	.	.	LowGQX	END=65540844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	65540845	.	C	.	.	LowGQX	.	GT	./.
chr2	65540846	.	A	.	.	LowGQX	END=65540853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	65540854	.	C	.	.	LowGQX	END=65540855	GT	./.
chr2	65540856	.	C	.	.	LowGQX	END=65540858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65540859	.	A	.	.	LowGQX	.	GT	./.
chr2	65540860	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65540861	.	C	.	.	LowGQX	.	GT	./.
chr2	65540862	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65540863	.	C	.	.	LowGQX	END=65540864	GT	./.
chr2	65540865	.	T	.	.	LowGQX	END=65540866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65540867	.	C	.	.	LowGQX	END=65540868	GT	./.
chr2	65540869	.	G	.	.	LowGQX	END=65540881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65540882	.	A	.	.	LowGQX	END=65541202	GT	./.
chr2	65541203	.	T	.	.	LowGQX	END=65541213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65541214	.	C	.	.	LowGQX	.	GT	./.
chr2	65541215	.	G	.	.	LowGQX	END=65541218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65541219	.	T	.	.	LowGQX	.	GT	./.
chr2	65541220	.	C	.	.	LowGQX	END=65541241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65541242	.	A	.	.	LowGQX	END=65541243	GT	./.
chr2	65541244	.	G	.	.	LowGQX	END=65541305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65543866	.	A	.	.	LowGQX	END=65544019	GT	./.
chr2	65559104	.	G	.	.	LowGQX	END=65559203	GT	./.
chr2	65561321	.	A	.	.	LowGQX	END=65561417	GT	./.
chr2	65561418	.	G	.	.	LowGQX	END=65561420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	65561737	.	A	.	.	LowGQX	END=65561799	GT	./.
chr2	65561800	.	G	.	.	LowGQX	END=65561825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65561826	.	T	.	.	LowGQX	.	GT	./.
chr2	65561827	.	A	.	.	LowGQX	END=65561851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65561852	.	G	.	.	LowGQX	.	GT	./.
chr2	65561853	.	T	.	.	LowGQX	END=65561858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65561859	.	T	.	.	LowGQX	.	GT	./.
chr2	65561860	.	G	.	.	LowGQX	END=65561863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65561864	.	T	.	.	LowGQX	.	GT	./.
chr2	65561865	.	T	.	.	LowGQX	END=65561867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65561868	.	T	.	.	LowGQX	.	GT	./.
chr2	65561869	.	G	.	.	LowGQX	END=65561870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65561871	.	A	.	.	LowGQX	.	GT	./.
chr2	65561872	.	G	.	.	LowGQX	END=65561875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65561876	.	A	.	.	LowGQX	END=65561877	GT	./.
chr2	65561878	.	G	.	.	LowGQX	END=65561885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65561886	.	T	.	.	LowGQX	.	GT	./.
chr2	65561887	.	T	.	.	LowGQX	END=65561890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65561891	.	T	.	.	LowGQX	.	GT	./.
chr2	65561892	.	A	.	.	LowGQX	END=65561899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65561900	.	A	.	.	LowGQX	.	GT	./.
chr2	65561901	.	A	.	.	LowGQX	END=65561909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65571643	.	A	.	.	LowGQX	END=65571655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65571656	.	A	.	.	LowGQX	END=65571657	GT	./.
chr2	65571658	.	A	.	.	LowGQX	END=65571660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65571661	.	A	.	.	LowGQX	.	GT	./.
chr2	65571662	.	G	.	.	LowGQX	END=65571666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65571667	.	T	.	.	LowGQX	END=65571742	GT	./.
chr2	65571851	.	A	.	.	LowGQX	END=65571855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65571856	.	T	.	.	LowGQX	.	GT	./.
chr2	65571857	.	T	.	.	LowGQX	END=65571861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65571862	.	T	.	.	LowGQX	.	GT	./.
chr2	65571863	.	T	.	.	LowGQX	END=65571866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65571867	.	G	.	.	LowGQX	.	GT	./.
chr2	65571868	.	T	.	.	LowGQX	END=65571880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65571881	.	A	.	.	LowGQX	END=65571882	GT	./.
chr2	65571883	.	G	.	.	LowGQX	END=65571894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65571895	.	T	.	.	LowGQX	.	GT	./.
chr2	65571896	.	C	.	.	LowGQX	END=65571956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	65571957	.	C	.	.	LowGQX	END=65572032	GT	./.
chr2	65593682	.	A	.	.	LowGQX	END=65593781	GT	./.
chr2	65604733	.	G	.	.	LowGQX	END=65604832	GT	./.
chr2	65659059	.	G	.	.	LowGQX	END=65659101	GT	./.
chr2	65659102	.	G	.	.	LowGQX	END=65659158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	66662905	.	G	.	.	PASS	END=66662912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:59
chr2	66662913	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:91:66:59
chr2	66662914	.	A	.	.	PASS	END=66662935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:59
chr2	66662936	.	G	.	.	PASS	END=66662973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:59
chr2	66662974	.	G	.	.	PASS	END=66663024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	66663025	.	A	.	.	PASS	END=66663064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr2	66664816	.	C	.	.	PASS	END=66664850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	66664851	.	C	.	.	PASS	END=66664868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	66664869	.	T	.	.	PASS	END=66664899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	66664900	.	A	.	.	PASS	END=66665014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr2	66665015	.	A	.	.	PASS	END=66665042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	66665043	.	A	.	.	PASS	END=66665058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	66665059	.	A	.	.	PASS	END=66665075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	66665076	.	G	.	.	PASS	END=66665095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	66666732	.	A	.	.	LowGQX	END=66666757	GT	./.
chr2	66666758	.	C	.	.	LowGQX	END=66666791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	66666792	.	G	.	.	LowGQX	.	GT	./.
chr2	66666793	.	A	.	.	LowGQX	END=66666795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	66666796	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	66666797	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr2	66666798	.	G	.	.	LowGQX	END=66666814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr2	66666815	.	C	.	.	LowGQX	END=66666819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	66666820	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr2	66666821	.	T	.	.	LowGQX	END=66666823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	66666824	.	G	.	.	LowGQX	END=66666828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	66666829	.	A	.	.	LowGQX	END=66666830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	66666831	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr2	66666964	.	T	.	.	PASS	END=66666983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:77:60
chr2	66666984	.	C	.	.	PASS	END=66667034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	66667035	.	C	.	.	PASS	END=66667072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	66667073	.	C	.	.	PASS	END=66667126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	66667619	.	A	.	.	PASS	END=66667750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	66667751	.	G	.	.	PASS	END=66667764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	66667765	.	C	.	.	PASS	END=66667778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr2	66668431	.	A	.	.	PASS	END=66668432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:99:60
chr2	66668433	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:71:60
chr2	66668434	.	C	.	.	PASS	END=66668466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr2	66668467	.	G	.	.	PASS	END=66668475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:95:60
chr2	66668476	.	T	.	.	PASS	END=66668497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	66668498	.	T	.	.	PASS	END=66668513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	66668514	.	A	.	.	PASS	END=66668628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	66668629	.	C	.	.	PASS	END=66668648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	66668649	.	A	.	.	PASS	END=66668650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	66670033	.	G	.	.	PASS	END=66670143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr2	66670144	.	T	.	.	PASS	END=66670188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr2	66670189	.	T	.	.	PASS	END=66670212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	66688957	.	A	.	.	LowGQX	END=66689056	GT	./.
chr2	66691207	.	C	.	.	PASS	END=66691255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:95:60
chr2	66691256	.	G	.	.	PASS	END=66691359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	66691360	.	A	.	.	PASS	END=66691365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	66736078	.	A	.	.	LowGQX	END=66736255	GT	./.
chr2	66739280	.	G	.	.	PASS	END=66739286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr2	66739287	.	G	.	.	PASS	END=66739298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr2	66739299	.	G	.	.	PASS	END=66739311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	66739312	.	C	.	.	PASS	END=66739331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	66739332	.	A	.	.	PASS	END=66739454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	66739455	.	A	.	.	PASS	END=66739467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	66739468	.	A	.	.	PASS	END=66739469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	66775023	.	A	.	.	PASS	END=66775061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	66775062	.	T	.	.	PASS	END=66775143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	66775144	.	A	.	.	PASS	END=66775182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	66794544	.	T	.	.	PASS	END=66794610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	66794611	.	T	.	.	PASS	END=66794623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	66794624	.	A	.	.	PASS	END=66794638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr2	66794639	.	A	.	.	PASS	END=66794650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	66794651	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:51:60
chr2	66794652	.	C	.	.	PASS	END=66794658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr2	66794659	.	T	.	.	PASS	END=66794661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	66794662	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:27:60
chr2	66794663	.	T	.	.	PASS	END=66794670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	66794671	.	A	.	.	PASS	END=66794675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	66794676	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:1:60
chr2	66794677	.	G	.	.	PASS	END=66794697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	66794698	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	66794699	.	C	.	.	PASS	END=66794702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	66794703	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr2	66794704	.	C	.	.	PASS	END=66794706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr2	66794707	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:5:60
chr2	66794708	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr2	66794709	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	66794710	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr2	66794711	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	66794712	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:36:60
chr2	66794713	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:1:60
chr2	66794714	.	T	.	.	PASS	END=66794720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	66794721	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	66794722	.	C	.	.	PASS	END=66794728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	66794729	.	A	.	.	LowGQX	END=66794731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr2	66794732	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	66794733	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr2	66794734	.	C	.	.	PASS	END=66794735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	66794736	.	G	.	.	LowGQX	END=66794737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	66795764	.	C	.	.	PASS	END=66795803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	66795804	.	C	.	.	PASS	END=66795853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	66795854	.	G	.	.	PASS	END=66795921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	66795922	.	T	.	.	PASS	END=66795949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:90:60
chr2	66796121	.	G	.	.	PASS	END=66796207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	66796208	.	A	.	.	PASS	END=66796233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	66796234	.	C	.	.	PASS	END=66796240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	66798367	.	A	.	.	LowGQX	END=66798666	GT	./.
chr2	67624508	.	T	.	.	LowGQX	END=67624867	GT	./.
chr2	67626299	.	A	.	.	LowGQX	END=67626431	GT	./.
chr2	67626620	.	G	.	.	LowGQX	END=67626770	GT	./.
chr2	67629992	.	A	.	.	LowGQX	END=67630063	GT	./.
chr2	67630064	.	G	.	.	LowGQX	END=67630108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67630355	.	A	.	.	LowGQX	END=67630357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67630358	.	T	.	.	LowGQX	.	GT	./.
chr2	67630359	.	T	.	.	LowGQX	END=67630394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67630395	.	T	.	.	LowGQX	END=67631309	GT	./.
chr2	67631310	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67631311	.	T	.	.	LowGQX	.	GT	./.
chr2	67631312	.	A	.	.	LowGQX	END=67631343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67631344	.	T	.	.	LowGQX	.	GT	./.
chr2	67631345	.	C	.	.	LowGQX	END=67631359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67631360	.	G	.	.	LowGQX	.	GT	./.
chr2	67631361	.	A	.	.	LowGQX	END=67631374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67631375	.	A	.	.	LowGQX	.	GT	./.
chr2	67631376	.	A	.	.	LowGQX	END=67631393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	67631394	.	G	.	.	LowGQX	.	GT	./.
chr2	67631395	.	G	.	.	LowGQX	END=67631403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	67631404	.	T	.	.	LowGQX	.	GT	./.
chr2	67631405	.	G	.	.	LowGQX	END=67631431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	67631432	.	C	.	.	LowGQX	.	GT	./.
chr2	67631433	.	A	.	.	LowGQX	END=67631445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	67631446	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	67631447	.	C	.	.	LowGQX	END=67631458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67631459	.	G	.	.	LowGQX	.	GT	./.
chr2	67631460	.	A	.	.	LowGQX	END=67631467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67631468	.	G	.	.	LowGQX	END=67631470	GT	./.
chr2	67631471	.	T	.	.	LowGQX	END=67631484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67631485	.	C	.	.	LowGQX	.	GT	./.
chr2	67631486	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67631487	.	G	.	.	LowGQX	.	GT	./.
chr2	67631488	.	T	.	.	LowGQX	END=67631492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67631493	.	C	.	.	LowGQX	.	GT	./.
chr2	67631494	.	C	.	.	LowGQX	END=67631495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67631496	.	G	.	.	LowGQX	.	GT	./.
chr2	67631497	.	T	.	.	LowGQX	END=67631498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67631499	.	T	.	.	LowGQX	END=67631500	GT	./.
chr2	67631501	.	A	.	.	LowGQX	END=67631505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67631506	.	C	.	.	LowGQX	.	GT	./.
chr2	67631507	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67631508	.	C	.	.	LowGQX	.	GT	./.
chr2	67631509	.	A	.	.	LowGQX	END=67631515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67631516	.	A	.	.	LowGQX	.	GT	./.
chr2	67631517	.	C	.	.	LowGQX	END=67631520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67631521	.	T	.	.	LowGQX	END=67631804	GT	./.
chr2	67631805	.	G	.	.	LowGQX	END=67631830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67631831	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	67631832	.	A	.	.	LowGQX	END=67632124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67632125	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	67632126	.	C	.	.	LowGQX	END=67632219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67632220	.	G	.	.	LowGQX	.	GT	./.
chr2	67632221	.	A	.	.	LowGQX	END=67632228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	67632229	.	A	.	.	LowGQX	END=67632469	GT	./.
chr2	67637041	.	A	.	.	LowGQX	END=67637220	GT	./.
chr2	68269989	.	T	.	.	LowGQX	END=68270187	GT	./.
chr2	68273038	.	T	.	.	LowGQX	END=68273060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68273061	.	T	.	.	LowGQX	END=68273197	GT	./.
chr2	68273404	.	A	.	.	LowGQX	END=68273486	GT	./.
chr2	68273487	.	G	.	.	LowGQX	END=68273506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68273507	.	A	.	.	LowGQX	.	GT	./.
chr2	68273508	.	A	.	.	LowGQX	END=68273522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68273523	.	G	.	.	LowGQX	.	GT	./.
chr2	68273524	.	C	.	.	LowGQX	END=68273540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68273541	.	A	.	.	LowGQX	.	GT	./.
chr2	68273542	.	A	.	.	LowGQX	END=68273547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68273548	.	A	.	.	LowGQX	.	GT	./.
chr2	68273549	.	A	.	.	LowGQX	END=68273555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68273556	.	A	.	.	LowGQX	.	GT	./.
chr2	68273557	.	A	.	.	LowGQX	END=68273559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68274303	.	A	.	.	LowGQX	END=68274451	GT	./.
chr2	68280192	.	C	.	.	LowGQX	END=68280252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68280253	.	T	.	.	LowGQX	END=68280300	GT	./.
chr2	68352438	.	A	.	.	PASS	END=68352478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	68352479	.	A	.	.	PASS	END=68352512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	68352513	.	G	.	.	PASS	END=68352514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	68352515	.	A	C	2216.38	PASS	BaseQRankSum=-0.491;DP=180;Dels=0.00;FS=2.911;HRun=1;HaplotypeScore=15.1507;MQ=60;MQ0=0;MQRankSum=1.939;QD=12.31;ReadPosRankSum=0.033;SB=-912.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:88,92:180:99:2246,0,2306:60:99:0.511
chr2	68352516	.	C	.	.	PASS	END=68352537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr2	68358368	.	A	.	.	LowGQX	END=68358579	GT	./.
chr2	68361762	.	A	.	.	LowGQX	END=68361990	GT	./.
chr2	68364429	.	A	.	.	LowGQX	END=68364567	GT	./.
chr2	68365872	.	A	.	.	LowGQX	END=68365991	GT	./.
chr2	68368824	.	A	.	.	LowGQX	END=68368929	GT	./.
chr2	68371675	.	A	.	.	LowGQX	END=68371818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68371819	.	A	.	.	LowGQX	END=68371849	GT	./.
chr2	68374540	.	T	.	.	LowGQX	END=68374701	GT	./.
chr2	68384391	.	A	.	.	LowGQX	END=68384430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68384431	.	A	.	.	LowGQX	END=68384432	GT	./.
chr2	68384433	.	A	.	.	LowGQX	END=68384473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68384474	.	C	.	.	LowGQX	.	GT	./.
chr2	68384475	.	A	.	.	LowGQX	END=68384510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68384511	.	A	.	.	LowGQX	END=68384512	GT	./.
chr2	68384513	.	C	.	.	LowGQX	END=68384517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68384518	.	T	.	.	LowGQX	.	GT	./.
chr2	68384519	.	G	.	.	LowGQX	END=68384526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68384527	.	A	.	.	LowGQX	.	GT	./.
chr2	68384528	.	G	.	.	LowGQX	END=68384532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68384533	.	T	.	.	LowGQX	.	GT	./.
chr2	68384534	.	C	.	.	LowGQX	END=68384541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68384542	.	G	.	.	LowGQX	.	GT	./.
chr2	68384543	.	G	.	.	LowGQX	END=68384558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68384559	.	T	.	.	LowGQX	.	GT	./.
chr2	68384560	.	T	.	.	LowGQX	END=68384620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68384621	.	C	.	.	LowGQX	END=68384826	GT	./.
chr2	68384928	.	C	.	.	LowGQX	END=68384995	GT	./.
chr2	68384996	.	G	.	.	LowGQX	END=68385096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	68385097	.	A	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	68385098	.	G	.	.	LowGQX	END=68385106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	68385107	.	A	.	.	LowGQX	END=68385275	GT	./.
chr2	68385510	.	A	.	.	LowGQX	END=68385663	GT	./.
chr2	68388323	.	T	.	.	LowGQX	END=68388422	GT	./.
chr2	68388807	.	T	.	.	LowGQX	END=68388906	GT	./.
chr2	68389378	.	G	.	.	LowGQX	END=68389477	GT	./.
chr2	68389676	.	A	.	.	LowGQX	END=68389797	GT	./.
chr2	68400465	.	T	.	.	LowGQX	END=68400564	GT	./.
chr2	68401851	.	T	.	.	LowGQX	END=68401950	GT	./.
chr2	68408069	.	T	.	.	LowGQX	END=68408076	GT	./.
chr2	68408077	.	G	.	.	LowGQX	END=68408168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68413599	.	C	.	.	LowGQX	END=68413798	GT	./.
chr2	68414367	.	C	.	.	LowGQX	END=68414466	GT	./.
chr2	68415645	.	C	.	.	LowGQX	END=68415822	GT	./.
chr2	68444194	.	G	.	.	LowGQX	END=68444293	GT	./.
chr2	68479148	.	A	.	.	LowGQX	END=68479307	GT	./.
chr2	68480120	.	C	.	.	LowGQX	END=68480226	GT	./.
chr2	68480227	.	C	.	.	LowGQX	END=68480229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68480230	.	C	.	.	LowGQX	.	GT	./.
chr2	68480231	.	A	.	.	LowGQX	END=68480232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68480233	.	G	.	.	LowGQX	END=68480234	GT	./.
chr2	68480235	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68480236	.	T	.	.	LowGQX	END=68480237	GT	./.
chr2	68480238	.	C	.	.	LowGQX	END=68480248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68480249	.	G	.	.	LowGQX	END=68480250	GT	./.
chr2	68480251	.	G	.	.	LowGQX	END=68480255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68480256	.	A	.	.	LowGQX	.	GT	./.
chr2	68480257	.	C	.	.	LowGQX	END=68480260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68480261	.	C	.	.	LowGQX	.	GT	./.
chr2	68480262	.	A	.	.	LowGQX	END=68480267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68480268	.	A	.	.	LowGQX	.	GT	./.
chr2	68480269	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68483168	.	G	.	.	LowGQX	END=68483267	GT	./.
chr2	68488292	.	A	.	.	LowGQX	END=68488364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68488365	.	T	.	.	LowGQX	.	GT	./.
chr2	68488366	.	G	.	.	LowGQX	END=68488391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68511538	.	T	.	.	LowGQX	END=68511637	GT	./.
chr2	68520992	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68520993	.	T	.	.	LowGQX	.	GT	./.
chr2	68520994	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68520995	.	C	.	.	LowGQX	.	GT	./.
chr2	68520996	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68520997	.	G	.	.	LowGQX	.	GT	./.
chr2	68520998	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68520999	.	G	.	.	LowGQX	.	GT	./.
chr2	68521000	.	G	.	.	LowGQX	END=68521002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68521003	.	G	.	.	LowGQX	END=68521004	GT	./.
chr2	68521005	.	A	.	.	LowGQX	END=68521007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68521008	.	C	.	.	LowGQX	END=68521009	GT	./.
chr2	68521010	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68521011	.	T	.	.	LowGQX	END=68521013	GT	./.
chr2	68521014	.	T	.	.	LowGQX	END=68521020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68521021	.	C	.	.	LowGQX	.	GT	./.
chr2	68521022	.	A	.	.	LowGQX	END=68521025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68521026	.	G	.	.	LowGQX	.	GT	./.
chr2	68521027	.	A	.	.	LowGQX	END=68521043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68521044	.	G	.	.	LowGQX	.	GT	./.
chr2	68521045	.	C	.	.	LowGQX	END=68521046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68521047	.	T	.	.	LowGQX	.	GT	./.
chr2	68521048	.	G	.	.	LowGQX	END=68521050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68521051	.	T	.	.	LowGQX	.	GT	./.
chr2	68521052	.	T	.	.	LowGQX	END=68521061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68521062	.	T	.	.	LowGQX	.	GT	./.
chr2	68521063	.	G	.	.	LowGQX	END=68521083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68521084	.	C	.	.	LowGQX	.	GT	./.
chr2	68521085	.	T	.	.	LowGQX	END=68521091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68521092	.	G	.	.	LowGQX	.	GT	./.
chr2	68521093	.	A	.	.	LowGQX	END=68521098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68521099	.	C	.	.	LowGQX	.	GT	./.
chr2	68521100	.	T	.	.	LowGQX	END=68521108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68521109	.	T	.	.	LowGQX	.	GT	./.
chr2	68521110	.	T	.	.	LowGQX	END=68521111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68521112	.	T	.	.	LowGQX	.	GT	./.
chr2	68521113	.	A	.	.	LowGQX	END=68521123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68521124	.	T	.	.	LowGQX	.	GT	./.
chr2	68521125	.	G	.	.	LowGQX	END=68521141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68521142	.	G	.	.	LowGQX	END=68521160	GT	./.
chr2	68544204	.	C	.	.	LowGQX	END=68544441	GT	./.
chr2	68546352	.	A	.	.	LowGQX	END=68546534	GT	./.
chr2	68592455	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68592456	.	G	.	.	LowGQX	.	GT	./.
chr2	68592457	.	A	.	.	LowGQX	END=68592460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68592461	.	T	.	.	LowGQX	.	GT	./.
chr2	68592462	.	T	.	.	LowGQX	END=68592477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68592478	.	G	.	.	LowGQX	.	GT	./.
chr2	68592479	.	C	.	.	LowGQX	END=68592481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68592482	.	G	.	.	LowGQX	END=68592516	GT	./.
chr2	68592517	.	G	.	.	LowGQX	END=68592521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68592522	.	G	.	.	LowGQX	.	GT	./.
chr2	68592523	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68592524	.	A	.	.	LowGQX	END=68592525	GT	./.
chr2	68592526	.	G	.	.	LowGQX	END=68592529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68592530	.	G	.	.	LowGQX	.	GT	./.
chr2	68592531	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68592532	.	G	.	.	LowGQX	END=68592533	GT	./.
chr2	68592534	.	A	.	.	LowGQX	END=68592536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68592537	.	T	.	.	LowGQX	.	GT	./.
chr2	68592538	.	G	.	.	LowGQX	END=68592553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68592554	.	T	.	.	LowGQX	.	GT	./.
chr2	68607458	.	A	.	.	LowGQX	END=68607617	GT	./.
chr2	68607853	.	A	.	.	LowGQX	END=68608038	GT	./.
chr2	68609670	.	G	.	.	LowGQX	END=68609765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68609766	.	G	.	.	LowGQX	END=68609769	GT	./.
chr2	68613632	.	A	.	.	LowGQX	END=68613808	GT	./.
chr2	68613809	.	C	.	.	LowGQX	END=68613820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68615517	.	A	.	.	LowGQX	END=68615519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68615520	.	C	.	.	LowGQX	.	GT	./.
chr2	68615521	.	A	.	.	LowGQX	END=68615527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68615528	.	G	.	.	LowGQX	.	GT	./.
chr2	68615529	.	G	.	.	LowGQX	END=68615537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68615538	.	G	.	.	LowGQX	.	GT	./.
chr2	68615539	.	T	.	.	LowGQX	END=68615554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68615555	.	G	.	.	LowGQX	.	GT	./.
chr2	68615556	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68615557	.	T	.	.	LowGQX	.	GT	./.
chr2	68615558	.	G	.	.	LowGQX	END=68615585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68615586	.	G	.	.	LowGQX	.	GT	./.
chr2	68615587	.	A	.	.	LowGQX	END=68615599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68615600	.	A	.	.	LowGQX	.	GT	./.
chr2	68615601	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68615602	.	G	.	.	LowGQX	END=68615603	GT	./.
chr2	68615604	.	A	.	.	LowGQX	END=68615616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68615617	.	G	.	.	LowGQX	.	GT	./.
chr2	68615618	.	A	.	.	LowGQX	END=68615623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	68615624	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	68615625	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	68620286	.	G	.	.	LowGQX	END=68620385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	68621224	.	T	.	.	LowGQX	END=68621323	GT	./.
chr2	68622810	.	A	.	.	LowGQX	END=68622866	GT	./.
chr2	68622867	.	C	.	.	LowGQX	END=68622902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68622903	.	A	.	.	LowGQX	.	GT	./.
chr2	68622904	.	G	.	.	LowGQX	END=68622913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68622914	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	68622915	.	A	.	.	LowGQX	END=68622916	GT	./.
chr2	68622917	.	C	.	.	LowGQX	END=68622950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68691339	.	C	.	.	LowGQX	END=68691504	GT	./.
chr2	68691970	.	A	.	.	LowGQX	END=68692279	GT	./.
chr2	68694811	.	G	.	.	LowGQX	END=68694961	GT	./.
chr2	68717308	.	T	.	.	LowGQX	END=68717407	GT	./.
chr2	68729861	.	A	.	.	LowGQX	END=68730060	GT	./.
chr2	68740210	.	A	.	.	LowGQX	END=68740361	GT	./.
chr2	68740678	.	A	.	.	LowGQX	END=68740756	GT	./.
chr2	68740757	.	G	.	.	LowGQX	END=68740760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68740761	.	T	.	.	LowGQX	.	GT	./.
chr2	68740762	.	T	.	.	LowGQX	END=68740816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68753191	.	A	.	.	LowGQX	END=68753194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	68753195	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	68753196	.	A	.	.	LowGQX	END=68753204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	68753205	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr2	68753206	.	G	.	.	LowGQX	END=68753219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	68753220	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr2	68753221	.	A	.	.	LowGQX	END=68753229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	68753230	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	68753231	.	A	.	.	LowGQX	END=68753244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	68753245	.	G	.	.	LowGQX	END=68753248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	68753249	.	A	.	.	LowGQX	END=68753250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr2	68753251	.	C	.	.	LowGQX	END=68753254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	68753255	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr2	68753256	.	C	.	.	LowGQX	END=68753262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr2	68753263	.	A	.	.	LowGQX	END=68753265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	68753266	.	A	.	.	LowGQX	END=68753274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	68753275	.	A	.	.	LowGQX	END=68753276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	68753277	.	T	.	.	LowGQX	END=68753279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	68753280	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr2	68753281	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr2	68753282	.	T	.	.	LowGQX	END=68753283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	68753284	.	A	.	.	LowGQX	END=68753285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr2	68753286	.	C	.	.	LowGQX	END=68753289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	68753290	.	A	.	.	LowGQX	END=68753295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	68753296	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr2	68753297	.	G	.	.	LowGQX	END=68753300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	68753301	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr2	68753302	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	68753303	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr2	68753304	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	68753305	.	A	.	.	LowGQX	END=68753308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	68753309	.	G	.	.	PASS	END=68753311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	68753312	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:39:60
chr2	68753313	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:24:60
chr2	68753314	.	A	.	.	PASS	END=68753317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr2	68753318	.	G	.	.	PASS	END=68753321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	68753322	.	C	.	.	PASS	END=68753353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr2	68753354	.	G	.	.	PASS	END=68753362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr2	68753363	.	A	.	.	PASS	END=68753376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:89:60
chr2	68762383	.	T	.	.	LowGQX	END=68762482	GT	./.
chr2	68765002	.	A	.	.	LowGQX	END=68765079	GT	./.
chr2	68765080	.	A	.	.	LowGQX	END=68765158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	68765159	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	68765160	.	G	.	.	LowGQX	END=68765224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	68765225	.	G	.	.	LowGQX	END=68765361	GT	./.
chr2	68772317	.	A	.	.	LowGQX	END=68772432	GT	./.
chr2	68772433	.	A	.	.	LowGQX	END=68772446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68794391	.	G	.	.	LowGQX	END=68794546	GT	./.
chr2	68804950	.	A	.	.	LowGQX	END=68805156	GT	./.
chr2	68805216	.	T	.	.	LowGQX	END=68805315	GT	./.
chr2	68872903	.	C	.	.	PASS	END=68872917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	68872918	.	T	.	.	PASS	END=68872926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	68872927	.	G	.	.	PASS	END=68872938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr2	68872939	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:66:60
chr2	68872940	.	C	.	.	PASS	END=68872961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr2	68872962	.	C	.	.	PASS	END=68872997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:86:60
chr2	68872998	.	T	.	.	PASS	END=68873022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	68873023	.	A	.	.	PASS	END=68873122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	68873123	.	C	.	.	PASS	END=68873191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	68873192	.	A	.	.	PASS	END=68873229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr2	68873230	.	C	.	.	PASS	END=68873262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr2	68873263	.	C	.	.	PASS	END=68873312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr2	68873313	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:72:60
chr2	68873314	.	G	.	.	PASS	END=68873323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr2	68873324	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:72:60
chr2	68873325	.	G	.	.	PASS	END=68873326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr2	68873327	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:42:60
chr2	68873328	.	G	.	.	PASS	END=68873334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	68873335	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:18:60
chr2	68873336	.	T	.	.	PASS	END=68873339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	68873340	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:18:60
chr2	68873341	.	T	.	.	PASS	END=68873352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr2	68873353	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:9:60
chr2	68873354	.	A	.	.	PASS	END=68873359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	68873360	.	T	.	.	PASS	END=68873361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr2	68873362	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	68873363	.	G	.	.	PASS	END=68873364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	68873365	.	A	.	.	LowGQX	END=68873367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr2	68873368	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr2	68873369	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr2	68873370	.	T	.	.	LowGQX	END=68873376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	68873377	.	T	.	.	LowGQX	END=68873383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	68873384	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr2	68873385	.	C	.	.	LowGQX	END=68873389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr2	68873390	.	T	.	.	LowGQX	END=68873397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	68873398	.	T	C	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.727;QD=1.24;ReadPosRankSum=0.727;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,1:4:30.11:33,0,30:60:5:0.250
chr2	68873399	.	A	.	.	LowGQX	END=68873401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	68873402	.	T	.	.	LowGQX	END=68873409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	68873410	.	A	.	.	LowGQX	END=68873489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68881961	.	T	.	.	LowGQX	END=68882038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	68882039	.	A	.	.	LowGQX	.	GT	./.
chr2	68882040	.	C	.	.	LowGQX	END=68882050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	68882051	.	G	.	.	LowGQX	END=68882057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	68882058	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr2	68882059	.	C	.	.	LowGQX	END=68882062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	68882063	.	C	.	.	LowGQX	END=68882073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	68882074	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr2	68882075	.	T	.	.	LowGQX	END=68882080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	68882081	.	G	.	.	LowGQX	END=68882090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	68882091	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	68882092	.	T	.	.	LowGQX	END=68882094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	68882095	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	68882096	.	C	.	.	LowGQX	END=68882097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr2	68882098	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr2	68882099	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:1:60
chr2	68882100	.	C	.	.	PASS	END=68882102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	68882103	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr2	68882104	.	T	.	.	PASS	END=68882107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	68882108	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	68882109	.	A	.	.	PASS	END=68882125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	68882126	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:1:60
chr2	68882127	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	68882128	.	C	.	.	PASS	END=68882139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr2	68882140	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr2	68882141	.	C	.	.	PASS	END=68882193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr2	68882194	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:60
chr2	68882195	.	G	.	.	PASS	END=68882196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	68882197	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:60
chr2	68882198	.	C	.	.	PASS	END=68882207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr2	68882208	.	T	.	.	PASS	END=68882220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr2	68882221	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:60
chr2	68882222	.	C	.	.	PASS	END=68882223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:60
chr2	68882224	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:60
chr2	68882225	.	C	.	.	PASS	END=68882237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	68882238	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr2	68882239	.	G	.	.	PASS	END=68882253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	68882254	.	G	.	.	PASS	END=68882259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr2	68882260	.	T	.	.	PASS	END=68882261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:60
chr2	68882262	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:42:60
chr2	68882263	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr2	68882264	.	C	.	.	PASS	END=68882279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr2	68882280	.	T	.	.	PASS	END=68882294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	68882295	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	68882296	.	G	.	.	PASS	END=68882301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	68882302	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	68882303	.	C	.	.	PASS	END=68882306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	68882307	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:21:60
chr2	68882308	.	T	.	.	PASS	END=68882319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	68882320	.	C	.	.	PASS	END=68882326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	68882327	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:0:60
chr2	68882328	.	C	.	.	PASS	END=68882351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	68882352	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:9:60
chr2	68882353	.	T	.	.	PASS	END=68882362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	68882363	.	C	.	.	PASS	END=68882399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	68882400	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:15:60
chr2	68882401	.	C	.	.	PASS	END=68882404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	68882405	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:6:60
chr2	68882406	.	G	.	.	PASS	END=68882420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr2	68882421	.	C	.	.	PASS	END=68882433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr2	68882434	.	T	.	.	PASS	END=68882441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr2	68882442	.	G	.	.	PASS	END=68882469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr2	68882470	.	T	.	.	PASS	END=68882520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr2	68882521	.	T	.	.	PASS	END=68882523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	68882524	.	G	.	.	PASS	END=68882525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:33:60
chr2	68882526	.	A	.	.	PASS	END=68882573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr2	68882574	.	G	.	.	PASS	END=68882609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	68882610	.	A	.	.	PASS	END=68882614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	68882615	.	T	.	.	PASS	END=68882624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr2	68882625	.	G	.	.	PASS	END=68882634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr2	68882635	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:0:60
chr2	68882636	.	C	.	.	PASS	END=68882644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr2	68882645	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:3:60
chr2	68882646	.	C	.	.	PASS	END=68882667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:33:60
chr2	68882668	.	T	.	.	PASS	END=68882685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	68882686	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	68882687	.	G	.	.	PASS	END=68882713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	68882714	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	68882715	.	G	.	.	PASS	END=68882724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	68882725	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	68882726	.	A	.	.	PASS	END=68882728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	68882729	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	68882730	.	T	.	.	PASS	END=68882731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	68882732	.	A	.	.	LowGQX	END=68882744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	68882745	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	68882746	.	T	.	.	LowGQX	END=68882748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	68882749	.	T	.	.	LowGQX	END=68882750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr2	68882751	.	T	.	.	LowGQX	END=68882752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	68882753	.	G	.	.	LowGQX	END=68882755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr2	68882756	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr2	68882757	.	C	.	39.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.02:60:9
chr2	68882758	.	T	.	.	LowGQX	END=68882759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	68962313	.	C	.	.	LowGQX	END=68962412	GT	./.
chr2	69002312	.	C	.	.	LowGQX	END=69002554	GT	./.
chr2	69002727	.	G	.	.	LowGQX	END=69002826	GT	./.
chr2	69009359	.	T	.	.	LowGQX	END=69009458	GT	./.
chr2	69014970	.	A	.	.	LowGQX	END=69015090	GT	./.
chr2	69034363	.	A	.	.	LowGQX	END=69034614	GT	./.
chr2	69040417	.	A	.	.	LowGQX	END=69040433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69040434	.	C	.	.	LowGQX	.	GT	./.
chr2	69040435	.	A	.	.	LowGQX	END=69040467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69040468	.	G	.	.	LowGQX	END=69040470	GT	./.
chr2	69040471	.	C	.	.	LowGQX	END=69040485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69040486	.	G	.	.	LowGQX	.	GT	./.
chr2	69040487	.	T	.	.	LowGQX	END=69040506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69040507	.	G	.	.	LowGQX	.	GT	./.
chr2	69040508	.	G	.	.	LowGQX	END=69040512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69040513	.	C	.	.	LowGQX	.	GT	./.
chr2	69040514	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69040515	.	G	.	.	LowGQX	.	GT	./.
chr2	69040516	.	C	.	.	LowGQX	END=69040527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69040528	.	C	.	.	LowGQX	.	GT	./.
chr2	69040529	.	T	.	.	LowGQX	END=69040553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69043285	.	G	.	.	LowGQX	END=69043507	GT	./.
chr2	69045003	.	A	.	.	LowGQX	END=69045128	GT	./.
chr2	69046253	.	A	.	.	LowGQX	END=69046325	GT	./.
chr2	69046326	.	G	.	.	LowGQX	END=69046468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69046469	.	T	.	.	LowGQX	END=69046649	GT	./.
chr2	69049470	.	A	.	.	LowGQX	END=69050006	GT	./.
chr2	69053117	.	A	.	.	LowGQX	END=69053327	GT	./.
chr2	69053328	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69053336	.	G	.	.	LowGQX	END=69053401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69053402	.	G	.	.	LowGQX	.	GT	./.
chr2	69053403	.	G	.	.	LowGQX	END=69053405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69053406	.	A	.	.	LowGQX	.	GT	./.
chr2	69053407	.	A	.	.	LowGQX	END=69053426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69053427	.	G	.	.	LowGQX	.	GT	./.
chr2	69053428	.	G	.	.	LowGQX	END=69053435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69092761	.	T	.	.	PASS	END=69092795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	69092796	.	T	.	.	PASS	END=69092850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	69092851	.	G	.	.	PASS	END=69092966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	69092967	.	G	.	.	PASS	END=69093093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	69093094	.	C	.	.	PASS	END=69093197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	69093198	.	T	.	.	PASS	END=69093320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	69093321	.	T	.	.	PASS	END=69093442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	69093443	.	C	.	.	PASS	END=69093569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	69093570	.	C	.	.	PASS	END=69093607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr2	69093608	.	C	.	.	PASS	END=69093617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	69093618	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:42:60
chr2	69093619	.	A	.	.	PASS	END=69093628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr2	69093629	.	G	.	.	PASS	END=69093633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr2	69093634	.	G	.	.	PASS	END=69093643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	69093644	.	C	.	.	PASS	END=69093656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr2	69093657	.	G	.	.	PASS	END=69093662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	69093663	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr2	69093664	.	T	.	.	LowGQX	END=69093665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:27:60
chr2	69093666	.	T	.	.	PASS	END=69093668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	69093669	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	69093670	.	A	.	.	PASS	END=69093671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	69093672	.	C	.	.	LowGQX	END=69093674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	69093675	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	69093676	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	69093677	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	69093678	.	A	.	.	LowGQX	END=69093681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	69093682	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	69093683	.	T	.	.	LowGQX	END=69093694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	69093695	.	A	.	.	LowGQX	END=69093696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr2	69093697	.	A	.	.	LowGQX	END=69093702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	69093703	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr2	69093704	.	C	.	.	LowGQX	END=69093705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	69098155	.	A	.	.	PASS	END=69098225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr2	69098226	.	A	.	.	PASS	END=69098268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr2	69098269	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:57:60
chr2	69098270	.	T	.	.	PASS	END=69098325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr2	69098326	.	G	.	.	PASS	END=69098331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	69098332	.	T	.	.	PASS	END=69098439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	69098440	.	G	.	.	PASS	END=69098477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	69098478	.	C	.	.	PASS	END=69098480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr2	69098481	.	G	.	.	PASS	END=69098486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	69098487	.	C	.	.	PASS	END=69098492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	69172492	.	T	.	.	LowGQX	END=69172591	GT	./.
chr2	69173421	.	C	.	.	LowGQX	END=69173594	GT	./.
chr2	69174277	.	A	.	.	LowGQX	END=69174391	GT	./.
chr2	69177256	.	A	.	.	LowGQX	END=69177397	GT	./.
chr2	69177811	.	A	.	.	LowGQX	END=69177910	GT	./.
chr2	69179938	.	A	.	.	LowGQX	END=69179979	GT	./.
chr2	69179980	.	A	.	.	LowGQX	END=69179988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69179989	.	T	.	.	LowGQX	END=69179990	GT	./.
chr2	69179991	.	C	.	.	LowGQX	END=69180006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69180007	.	G	.	.	LowGQX	.	GT	./.
chr2	69180008	.	G	.	.	LowGQX	END=69180012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69180013	.	T	.	.	LowGQX	.	GT	./.
chr2	69180014	.	G	.	.	LowGQX	END=69180020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69180021	.	T	.	.	LowGQX	.	GT	./.
chr2	69180022	.	A	.	.	LowGQX	END=69180035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69180036	.	T	.	.	LowGQX	.	GT	./.
chr2	69180037	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69201745	.	G	.	.	LowGQX	END=69201844	GT	./.
chr2	69204604	.	A	.	.	LowGQX	END=69204703	GT	./.
chr2	69204767	.	A	.	.	LowGQX	END=69204908	GT	./.
chr2	69206001	.	A	.	.	LowGQX	END=69206115	GT	./.
chr2	69207043	.	A	.	.	LowGQX	END=69207194	GT	./.
chr2	69207859	.	A	.	.	LowGQX	END=69207958	GT	./.
chr2	69240581	.	G	.	.	PASS	END=69240604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	69240605	.	G	.	.	PASS	END=69240662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr2	69240663	.	T	.	.	PASS	END=69240817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr2	69240818	.	T	.	.	PASS	END=69240834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr2	69267125	.	T	.	.	PASS	END=69267133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chr2	69267134	.	G	.	.	PASS	END=69267146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr2	69267147	.	T	.	.	PASS	END=69267175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr2	69267176	.	A	.	.	PASS	END=69267206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr2	69267207	.	A	.	.	PASS	END=69267268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	69267269	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:58:60
chr2	69267270	.	T	.	.	PASS	END=69267271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	69267272	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:52:60
chr2	69267273	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:68:60
chr2	69267274	.	C	.	.	PASS	END=69267280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr2	69267281	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:57:60
chr2	69267282	.	T	.	.	PASS	END=69267295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr2	69267296	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:21:60
chr2	69267297	.	A	.	.	PASS	END=69267298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr2	69271823	.	G	.	.	PASS	END=69271841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	69271842	.	T	.	.	PASS	END=69271877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	69271878	.	C	.	.	PASS	END=69271968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	69271969	.	T	.	.	PASS	END=69271995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	69271996	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:78:99:60
chr2	69297728	.	G	.	.	PASS	END=69297760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr2	69297761	.	A	.	.	PASS	END=69297790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	69297791	.	T	.	.	PASS	END=69297903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	69297904	.	T	.	.	PASS	END=69297911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	69298813	.	C	.	.	PASS	END=69298816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	69298817	.	T	C	801.99	PASS	BaseQRankSum=-0.280;DP=80;Dels=0.00;FS=0.879;HRun=0;HaplotypeScore=6.6812;MQ=60;MQ0=0;MQRankSum=-0.926;QD=10.02;ReadPosRankSum=-0.589;SB=-470.08	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:43,37:80:99:832,0,1093:60:99:0.463
chr2	69298818	.	A	.	.	PASS	END=69298931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	69298932	.	T	.	.	PASS	END=69298949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr2	69298950	.	A	.	.	PASS	END=69298970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr2	69300103	.	T	.	.	PASS	END=69300108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr2	69300109	.	G	.	.	PASS	END=69300115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr2	69300116	.	G	.	.	PASS	END=69300117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	69300118	.	A	.	.	PASS	END=69300122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr2	69300123	.	G	.	.	PASS	END=69300133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr2	69300134	.	G	.	.	PASS	END=69300147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	69300148	.	A	.	.	PASS	END=69300165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	69300166	.	C	.	.	PASS	END=69300268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	69300269	.	T	.	.	PASS	END=69300281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	69300282	.	C	.	.	PASS	END=69300284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	69302671	.	G	.	.	PASS	END=69302707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	69302708	.	T	.	.	PASS	END=69302782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr2	69302783	.	A	.	.	PASS	END=69302841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr2	69304489	.	A	.	.	PASS	END=69304519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	69304520	.	T	.	.	PASS	END=69304640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	69304641	.	G	.	.	PASS	END=69304670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	69304671	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:132:99:60
chr2	69317940	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:42:60
chr2	69317941	.	T	.	.	PASS	END=69317955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr2	69317956	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:60
chr2	69317957	.	T	.	.	PASS	END=69317983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr2	69317984	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:75:60
chr2	69317985	.	T	.	.	PASS	END=69318036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	69318037	.	C	.	.	PASS	END=69318052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr2	69318053	.	T	.	.	PASS	END=69318102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr2	69329923	.	G	.	.	PASS	END=69330058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	69330059	.	C	.	.	PASS	END=69330079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	69330080	.	C	.	.	PASS	END=69330096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	69330097	.	T	.	.	PASS	END=69330168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	69350098	.	A	.	.	PASS	END=69350119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr2	69350120	.	T	.	.	PASS	END=69350145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:92:60
chr2	69350146	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:67:63:60
chr2	69350147	.	A	.	.	PASS	END=69350187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	69350188	.	G	.	.	PASS	END=69350267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	69350268	.	A	.	.	PASS	END=69350269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	69351646	.	T	.	.	PASS	END=69351694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:96:60
chr2	69351695	.	A	.	.	PASS	END=69351780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	69351781	.	T	.	.	PASS	END=69351788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	69351789	.	T	.	.	PASS	END=69351817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	69351818	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:57:60
chr2	69351819	.	G	.	.	PASS	END=69351826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	69362122	.	A	.	.	LowGQX	END=69362221	GT	./.
chr2	69372413	.	C	.	.	PASS	END=69372512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	69379250	.	A	.	.	PASS	END=69379259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr2	69379260	.	G	.	.	PASS	END=69379264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr2	69379265	.	A	.	.	PASS	END=69379267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:63:60
chr2	69379268	.	C	.	.	PASS	END=69379283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr2	69379284	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:63:60
chr2	69379285	.	T	.	.	PASS	END=69379326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:60
chr2	69379327	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:70:60
chr2	69379328	.	C	.	.	PASS	END=69379401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	69379402	.	T	.	.	PASS	END=69379429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr2	69379430	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:65:60
chr2	69379431	.	A	.	.	PASS	END=69379447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr2	69397311	.	G	.	.	PASS	END=69397330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	69397331	.	G	.	.	PASS	END=69397409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	69397410	.	G	.	.	PASS	END=69397441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	69397442	.	G	.	.	PASS	END=69397465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	69397466	.	A	.	.	PASS	END=69397472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	69399428	.	T	.	.	PASS	END=69399442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:84:60
chr2	69399443	.	G	.	.	PASS	END=69399527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	69408867	.	C	.	.	PASS	END=69408886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	69408887	.	G	.	.	PASS	END=69409004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	69409005	.	A	.	.	PASS	END=69409021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	69409022	.	A	.	.	PASS	END=69409028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	69409029	.	C	A	965.10	PASS	BaseQRankSum=1.404;DP=65;Dels=0.00;FS=3.379;HRun=1;HaplotypeScore=2.8935;MQ=60;MQ0=0;MQRankSum=0.138;QD=14.85;ReadPosRankSum=-0.413;SB=-248.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:25,39:65:99:995,0,660:60:99:0.609
chr2	69409030	.	A	.	.	PASS	END=69409049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	69409050	.	T	.	.	PASS	END=69409064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr2	69409574	.	G	.	.	PASS	END=69409633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	69409634	.	G	.	.	PASS	END=69409651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:84:60
chr2	69409652	.	G	.	.	PASS	END=69409696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	69409697	.	A	.	.	PASS	END=69409828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	69409829	.	T	.	.	PASS	END=69409843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	69420416	.	A	.	.	PASS	END=69420507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	69420508	.	T	.	.	PASS	END=69420524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:61
chr2	69420525	.	T	.	.	PASS	END=69420541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:61
chr2	69420542	.	G	.	.	PASS	END=69420554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:61
chr2	69420555	.	T	.	.	PASS	END=69420572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:62
chr2	69420573	.	T	.	.	PASS	END=69420590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:63
chr2	69420591	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:39:64
chr2	69420592	.	C	.	.	PASS	END=69420594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:64
chr2	69420594	.	CAT	C	258.11	PASS	BaseQRankSum=0.301;DP=26;FS=3.565;HRun=0;HaplotypeScore=138.1962;MQ=64;MQ0=0;MQRankSum=2.819;QD=9.93;ReadPosRankSum=-0.684;SB=-26.98	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:15,10:26:99:297,0,425:64:99:0.400
chr2	69420595	.	A	.	75.14	PASS	DP=25;MQ=64;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:15:15:45.14:64:45
chr2	69420596	.	T	.	60.08	PASS	DP=25;MQ=64;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:15:15:30.09:64:30
chr2	69420597	.	A	.	.	PASS	END=69420598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:64
chr2	69472306	.	C	.	.	PASS	END=69472323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr2	69472324	.	G	.	.	PASS	END=69472416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	69472417	.	A	.	.	PASS	END=69472431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr2	69472432	.	T	.	.	PASS	END=69472437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr2	69472438	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:39:60
chr2	69472439	.	C	.	.	PASS	END=69472443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr2	69472444	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:39:60
chr2	69472445	.	C	.	.	PASS	END=69472450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	69472451	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:30:60
chr2	69472452	.	C	.	.	PASS	END=69472458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr2	69472459	.	A	.	.	PASS	END=69472460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	69472461	.	T	.	.	PASS	END=69472469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	69472470	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	69472471	.	C	.	.	LowGQX	END=69472472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	69472473	.	T	.	.	LowGQX	END=69472474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr2	69472475	.	C	.	.	LowGQX	END=69472477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	69472478	.	C	.	.	LowGQX	END=69472482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	69472483	.	T	.	.	LowGQX	END=69472492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	69472493	.	C	.	.	LowGQX	END=69472501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	69472502	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	69472503	.	C	.	.	LowGQX	END=69472513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	69472514	.	C	.	.	LowGQX	END=69472548	GT	./.
chr2	69472549	.	C	.	.	LowGQX	END=69472551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	69472552	.	C	.	.	LowGQX	END=69472553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	69472554	.	C	.	.	LowGQX	END=69472558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	69472559	.	C	.	.	LowGQX	END=69472562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	69472563	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr2	69472564	.	C	.	.	LowGQX	END=69472572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	69472573	.	A	.	.	LowGQX	END=69472574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:18:60
chr2	69472575	.	G	.	.	LowGQX	END=69472586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr2	69472587	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr2	69472588	.	T	.	.	LowGQX	END=69472589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:60
chr2	69472590	.	C	.	.	PASS	END=69472591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	69472592	.	G	.	.	LowGQX	END=69472593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr2	69472594	.	C	.	.	PASS	END=69472595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	69472596	.	T	.	.	LowGQX	END=69472597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:18:60
chr2	69472598	.	C	.	.	LowGQX	END=69472604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr2	69472605	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr2	69472606	.	C	.	.	LowGQX	END=69472608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:60
chr2	69472609	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr2	69472610	.	C	.	.	LowGQX	END=69472612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr2	69472613	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:60
chr2	69472614	.	C	.	.	LowGQX	END=69472615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:60
chr2	69472616	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr2	69472617	.	G	.	.	LowGQX	END=69472618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr2	69472619	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:18:60
chr2	69472620	.	C	.	.	LowGQX	END=69472621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:60
chr2	69472622	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr2	69472623	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr2	69472624	.	A	.	.	PASS	END=69472625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr2	69472626	.	G	.	.	LowGQX	END=69472627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:21:60
chr2	69472628	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr2	69472629	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:18:60
chr2	69472630	.	C	.	.	LowGQX	END=69472637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:21:60
chr2	69472638	.	G	.	.	PASS	END=69472640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	69472641	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr2	69472642	.	C	.	.	PASS	END=69472643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr2	69472644	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr2	69472645	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr2	69472646	.	C	.	.	LowGQX	END=69472649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:60
chr2	69472650	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr2	69472651	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr2	69472652	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr2	69472653	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:60
chr2	69472654	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr2	69472655	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:0:60
chr2	69472656	.	A	.	.	PASS	END=69472657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	69472658	.	G	.	.	LowGQX	END=69472659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:60
chr2	69472660	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr2	69472661	.	A	.	.	LowGQX	END=69472662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:24:60
chr2	69472663	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr2	69472664	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:24:60
chr2	69472665	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chr2	69472666	.	A	.	.	LowGQX	END=69472668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:27:60
chr2	69553270	.	T	.	.	PASS	END=69553272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr2	69553273	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:36:60
chr2	69553274	.	T	.	.	PASS	END=69553283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:59:60
chr2	69553284	.	T	.	.	PASS	END=69553304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	69553305	.	T	.	.	PASS	END=69553323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr2	69553324	.	C	.	.	PASS	END=69553350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr2	69553351	.	C	.	.	PASS	END=69553358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:75:61
chr2	69553359	.	A	.	.	PASS	END=69553367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:87:61
chr2	69553368	.	G	.	.	PASS	END=69553369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:72:61
chr2	69553370	.	A	.	.	PASS	END=69553374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:61
chr2	69553375	.	G	.	105.22	PASS	DP=49;MQ=61;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:39:48:75.23:61:75
chr2	69553375	.	GA	G	365.79	PASS	BaseQRankSum=-0.330;DP=49;FS=0.000;HRun=13;HaplotypeScore=250.6120;MQ=61;MQ0=0;MQRankSum=1.564;QD=7.47;ReadPosRankSum=-0.755;SB=-185.66	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,18:49:99:405,0,422:61:99:0.409
chr2	69553376	.	A	.	78.15	PASS	DP=49;MQ=61;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0:26:26:48.16:61:48
chr2	69553377	.	A	.	.	PASS	END=69553389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:61
chr2	69553390	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:76:61
chr2	69553391	.	A	.	.	PASS	END=69553392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:90:61
chr2	69553393	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:72:61
chr2	69553394	.	A	.	.	PASS	END=69553398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:75:61
chr2	69553399	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:99:61
chr2	69553400	.	G	.	.	PASS	END=69553411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:72:61
chr2	69553412	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:59:61
chr2	69553413	.	C	.	.	PASS	END=69553416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:61
chr2	69553995	.	G	.	.	PASS	END=69553999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	69554000	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:31:60
chr2	69554001	.	A	.	.	PASS	END=69554024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr2	69554025	.	C	.	.	PASS	END=69554031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	69554032	.	G	.	.	PASS	END=69554052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	69554053	.	C	.	.	PASS	END=69554077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	69554078	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:75:60
chr2	69554079	.	C	.	.	PASS	END=69554086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	69554087	.	G	.	.	PASS	END=69554118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	69554119	.	C	.	.	PASS	END=69554129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	69554130	.	G	.	.	PASS	END=69554202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	69554203	.	C	.	.	PASS	END=69554241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	69554242	.	C	.	.	PASS	END=69554258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	69555352	.	C	.	.	PASS	END=69555388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	69555389	.	G	.	.	PASS	END=69555447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr2	69555448	.	A	.	.	PASS	END=69555500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	69555501	.	C	.	.	PASS	END=69555597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	69555598	.	C	.	.	PASS	END=69555621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	69556378	.	T	.	.	PASS	END=69556389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr2	69556390	.	G	.	.	PASS	END=69556401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr2	69556402	.	A	.	.	PASS	END=69556445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	69556446	.	A	.	.	PASS	END=69556480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	69556481	.	A	.	.	PASS	END=69556552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	69556553	.	A	.	.	PASS	END=69556607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	69556765	.	A	.	.	PASS	END=69556781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr2	69556782	.	A	.	.	PASS	END=69556805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	69556806	.	G	.	.	PASS	END=69556893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	69556894	.	C	.	.	PASS	END=69556931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	69556932	.	T	.	.	PASS	END=69556956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	69556957	.	A	.	.	PASS	END=69556981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:82:60
chr2	69564979	.	T	.	.	PASS	END=69565003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	69565004	.	A	.	.	PASS	END=69565037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	69565038	.	T	.	.	PASS	END=69565072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	69565073	.	A	.	.	PASS	END=69565137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	69565138	.	T	.	.	PASS	END=69565173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	69565174	.	A	.	.	PASS	END=69565188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	69565189	.	T	.	.	PASS	END=69565203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr2	69565204	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:57:60
chr2	69565205	.	C	.	.	PASS	END=69565208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr2	69565209	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:60:60
chr2	69565210	.	A	.	.	PASS	END=69565217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr2	69565218	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:37:12:60
chr2	69565219	.	A	.	.	PASS	END=69565233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	69565234	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:60:60
chr2	69565235	.	A	.	.	PASS	END=69565238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr2	69565526	.	T	.	.	PASS	END=69565549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	69565550	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:75:60
chr2	69565551	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:30:60
chr2	69565552	.	T	.	.	PASS	END=69565575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr2	69565576	.	C	.	.	PASS	END=69565600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	69565601	.	C	.	.	PASS	END=69565652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	69565653	.	C	.	.	PASS	END=69565670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	69565671	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:24:60
chr2	69565672	.	G	.	.	PASS	END=69565678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	69565679	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:15:60
chr2	69565680	.	C	.	.	PASS	END=69565706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	69565707	.	A	.	.	PASS	END=69565715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr2	69565716	.	T	.	.	PASS	END=69565723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr2	69565724	.	A	.	.	PASS	END=69565731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	69565732	.	C	.	.	PASS	END=69565744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	69565745	.	T	.	.	PASS	END=69565748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	69569233	.	T	.	.	PASS	END=69569240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr2	69569241	.	T	.	.	PASS	END=69569243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:60:60
chr2	69569244	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:99:60
chr2	69569245	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:60:60
chr2	69569246	.	T	.	.	PASS	END=69569282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:86:60
chr2	69569283	.	C	.	.	PASS	END=69569343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	69569344	.	G	.	.	PASS	END=69569370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	69569371	.	A	.	.	PASS	END=69569422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:60
chr2	69569423	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:64:60
chr2	69569424	.	A	.	.	PASS	END=69569432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr2	69572985	.	C	.	.	PASS	END=69572992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	69572993	.	T	.	.	PASS	END=69573028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	69573029	.	T	C	733.34	PASS	BaseQRankSum=1.123;DP=65;Dels=0.00;FS=3.667;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-0.296;QD=11.28;ReadPosRankSum=-0.138;SB=-281.43	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,31:65:99:763,0,855:60:99:0.477
chr2	69573030	.	A	.	.	PASS	END=69573072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	69573073	.	G	.	.	PASS	END=69573138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	69573139	.	A	.	.	PASS	END=69573182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	69575252	.	T	.	.	PASS	END=69575276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr2	69575277	.	A	.	.	PASS	END=69575304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr2	69575305	.	T	.	.	PASS	END=69575311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr2	69575312	.	T	.	.	PASS	END=69575343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr2	69575344	.	G	.	.	PASS	END=69575346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	69575347	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:69:69:60
chr2	69575348	.	G	.	.	PASS	END=69575423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	69575424	.	A	.	.	PASS	END=69575462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	69575463	.	A	.	.	PASS	END=69575502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	69575503	.	C	.	.	PASS	END=69575517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	69577159	.	A	.	.	PASS	END=69577193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	69577194	.	A	.	.	PASS	END=69577277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	69577278	.	C	.	.	PASS	END=69577297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	69577298	.	T	.	.	PASS	END=69577334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	69577335	.	T	.	.	PASS	END=69577342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr2	69577343	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:54:60
chr2	69577344	.	A	.	.	PASS	END=69577366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	69581388	.	C	.	.	PASS	END=69581487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	69581570	.	G	.	.	PASS	END=69581632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	69581633	.	G	.	.	PASS	END=69581671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	69581672	.	G	.	.	PASS	END=69581751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	69583577	.	T	.	.	PASS	END=69583607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	69583608	.	A	.	.	PASS	END=69583697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	69583698	.	G	.	.	PASS	END=69583740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	69585410	.	T	.	.	PASS	END=69585416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr2	69585417	.	G	.	.	PASS	END=69585432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	69585433	.	A	.	.	PASS	END=69585451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	69585452	.	G	.	.	PASS	END=69585482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr2	69585483	.	A	.	.	PASS	END=69585502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr2	69585503	.	A	.	.	PASS	END=69585524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	69585525	.	T	.	.	PASS	END=69585646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	69586349	.	T	.	.	PASS	END=69586364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	69586365	.	C	.	.	PASS	END=69586369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	69586370	.	A	G	895.98	PASS	BaseQRankSum=0.476;DP=70;Dels=0.00;FS=3.828;HRun=1;HaplotypeScore=6.8184;MQ=60;MQ0=0;MQRankSum=0.809;QD=12.80;ReadPosRankSum=2.365;SB=-387.73	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,38:70:99:926,0,868:60:99:0.559
chr2	69586371	.	C	.	.	PASS	END=69586421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	69586422	.	T	.	.	PASS	END=69586465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	69586466	.	A	.	.	PASS	END=69586508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	69586509	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:99:60
chr2	69590626	.	C	.	.	PASS	END=69590706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr2	69590707	.	T	.	.	PASS	END=69590721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	69590722	.	G	.	.	PASS	END=69590745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	69590746	.	T	.	.	PASS	END=69590803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	69590804	.	T	.	.	PASS	END=69590853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	69597082	.	G	.	.	PASS	END=69597096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	69597097	.	G	.	.	PASS	END=69597217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	69597218	.	A	.	.	PASS	END=69597238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	69597239	.	A	.	.	PASS	END=69597247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	69597248	.	A	.	.	PASS	END=69597281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	69597282	.	C	.	.	PASS	END=69597291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	69601087	.	A	.	.	PASS	END=69601144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	69601145	.	A	.	.	PASS	END=69601179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	69601180	.	T	.	.	PASS	END=69601295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	69601296	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:82:99:60
chr2	69614086	.	A	.	.	PASS	END=69614091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr2	69614092	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:90:60
chr2	69614093	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:63:60
chr2	69614094	.	C	.	.	PASS	END=69614100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr2	69614101	.	C	.	.	PASS	END=69614102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:60:60
chr2	69614103	.	C	.	.	PASS	END=69614113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr2	69614114	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:49:60
chr2	69614115	.	C	.	.	PASS	END=69614140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr2	69614141	.	C	.	.	PASS	END=69614160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr2	69614161	.	A	G	570.84	PASS	BaseQRankSum=2.348;DP=53;Dels=0.00;FS=2.649;HRun=0;HaplotypeScore=11.3630;MQ=60;MQ0=0;MQRankSum=0.330;QD=10.77;ReadPosRankSum=-0.388;SB=-359.88	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:25,25:53:99:601,0,533:60:99:0.500
chr2	69614162	.	C	.	.	PASS	END=69614197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:60
chr2	69614198	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:72:60
chr2	69614199	.	C	.	.	PASS	END=69614204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr2	69614205	.	A	.	.	PASS	END=69614215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:66:60
chr2	69614216	.	A	.	.	PASS	END=69614227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:60:60
chr2	69614228	.	G	.	.	PASS	END=69614239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:60
chr2	69614240	.	T	.	.	PASS	END=69614262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:60
chr2	69614263	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:12:60
chr2	69614264	.	A	.	.	PASS	END=69614268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chr2	69614269	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:33:60
chr2	69623244	.	A	.	.	PASS	END=69623246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr2	69623247	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:60
chr2	69623248	.	A	.	.	PASS	END=69623322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr2	69623323	.	T	.	.	PASS	END=69623349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	69623350	.	G	.	.	PASS	END=69623473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	69626452	.	T	.	.	LowGQX	END=69626551	GT	./.
chr2	69627433	.	T	.	.	PASS	END=69627475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	69627476	.	G	.	.	PASS	END=69627522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	69627523	.	A	.	.	PASS	END=69627582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	69627583	.	G	.	.	PASS	END=69627617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	69627618	.	C	.	.	PASS	END=69627643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	69627644	.	T	.	.	PASS	END=69627671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	69627672	.	T	.	.	PASS	END=69627714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	69627715	.	G	.	.	PASS	END=69627721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	69633103	.	T	.	.	PASS	END=69633134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	69633135	.	T	.	.	PASS	END=69633151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	69633152	.	A	.	.	PASS	END=69633265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	69642266	.	A	.	.	PASS	END=69642297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr2	69642298	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:57:60
chr2	69642299	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:27:60
chr2	69642300	.	T	.	.	PASS	END=69642302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr2	69642303	.	A	.	.	PASS	END=69642313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr2	69642314	.	T	.	.	PASS	END=69642335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr2	69642336	.	T	.	.	PASS	END=69642344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	69642345	.	A	.	.	PASS	END=69642418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	69642419	.	A	.	.	PASS	END=69642463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	69642464	.	C	.	.	PASS	END=69642482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	69646619	.	G	.	.	PASS	END=69646656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr2	69646657	.	A	.	.	PASS	END=69646703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	69646704	.	A	.	.	PASS	END=69646787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	69650663	.	C	.	.	PASS	END=69650691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr2	69650692	.	G	.	.	PASS	END=69650696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	69650697	.	T	.	.	PASS	END=69650702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr2	69650703	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:37:60
chr2	69650704	.	A	.	.	PASS	END=69650715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr2	69650716	.	A	.	.	PASS	END=69650757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	69650758	.	C	.	.	PASS	END=69650838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	69650839	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:73:60
chr2	69650840	.	A	.	.	PASS	END=69650856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr2	69650857	.	A	.	.	PASS	END=69650900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	69657028	.	G	.	.	LowGQX	END=69657187	GT	./.
chr2	69658983	.	A	.	.	PASS	END=69659010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	69659011	.	C	.	.	PASS	END=69659125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	69659126	.	A	T	1751.43	PASS	BaseQRankSum=0.922;DP=144;Dels=0.00;FS=6.322;HRun=1;HaplotypeScore=10.5641;MQ=60;MQ0=0;MQRankSum=-0.450;QD=12.16;ReadPosRankSum=0.126;SB=-759.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:76,68:144:99:1781,0,2228:60:99:0.472
chr2	69659127	.	T	.	.	PASS	END=69659188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	69664442	.	C	.	.	PASS	END=69664465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	69664466	.	A	.	.	PASS	END=69664520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	69664521	.	C	.	.	PASS	END=69664579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr2	69664580	.	C	.	.	PASS	END=69664696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr2	69664697	.	C	.	.	PASS	END=69664724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr2	69664725	.	G	.	.	PASS	END=69664739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	69664740	.	A	.	.	PASS	END=69664760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	69688708	.	C	.	.	LowGQX	END=69688867	GT	./.
chr2	69692556	.	C	.	.	LowGQX	END=69692802	GT	./.
chr2	69692803	.	G	.	.	LowGQX	END=69692880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	69692881	.	C	.	.	LowGQX	.	GT	./.
chr2	69692882	.	C	.	.	LowGQX	END=69692903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	69692904	.	G	.	.	LowGQX	.	GT	./.
chr2	69692905	.	G	.	.	LowGQX	END=69692920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	69692921	.	G	.	.	LowGQX	END=69692948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	69692949	.	C	.	35.88	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:5.89:60:6
chr2	69692950	.	A	.	.	LowGQX	END=69693005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	69693006	.	C	T	58.30	LowGQ;LowGQX	DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=14.57;SB=-78.64	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,4:4:6.02:90,6,0:60:6:1.000
chr2	69693007	.	C	.	.	LowGQX	END=69693008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	69693009	.	C	.	36	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.01:60:6
chr2	69693010	.	G	.	.	LowGQX	END=69693011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	69693012	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	69693013	.	C	.	.	LowGQX	END=69693018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	69693019	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	69693020	.	A	.	.	LowGQX	END=69693073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	69693074	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr2	69693075	.	A	.	.	LowGQX	END=69693099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69693100	.	G	.	.	LowGQX	END=69693624	GT	./.
chr2	69702998	.	C	.	.	LowGQX	END=69703097	GT	./.
chr2	69704011	.	C	.	.	LowGQX	END=69704044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69704045	.	G	.	.	LowGQX	.	GT	./.
chr2	69704046	.	G	.	.	LowGQX	END=69704052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69704053	.	T	.	.	LowGQX	END=69704122	GT	./.
chr2	69706012	.	A	.	.	LowGQX	END=69706193	GT	./.
chr2	69707991	.	C	.	.	LowGQX	END=69708093	GT	./.
chr2	69709717	.	A	.	.	LowGQX	END=69709944	GT	./.
chr2	69723115	.	A	.	.	LowGQX	END=69723214	GT	./.
chr2	69732700	.	C	.	.	LowGQX	END=69732722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69732723	.	C	.	.	LowGQX	END=69732737	GT	./.
chr2	69732738	.	A	.	.	LowGQX	END=69732805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	69734552	.	C	.	.	LowGQX	END=69734710	GT	./.
chr2	69736362	.	C	.	.	LowGQX	END=69736595	GT	./.
chr2	69741602	.	C	.	.	LowGQX	END=69741658	GT	./.
chr2	69741659	.	G	.	.	LowGQX	END=69741753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69741754	.	T	.	.	LowGQX	END=69741756	GT	./.
chr2	69741757	.	T	.	.	LowGQX	END=69741853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69741854	.	T	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	69741855	.	C	.	.	LowGQX	END=69741865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69741866	.	G	.	.	LowGQX	END=69741881	GT	./.
chr2	69746085	.	C	.	.	LowGQX	END=69746185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69746186	.	T	.	.	LowGQX	END=69746372	GT	./.
chr2	69747965	.	C	.	.	LowGQX	END=69747978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69747979	.	T	.	.	LowGQX	.	GT	./.
chr2	69747980	.	G	.	.	LowGQX	END=69748010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69748011	.	T	.	.	LowGQX	.	GT	./.
chr2	69748012	.	C	.	.	LowGQX	END=69748091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69748092	.	T	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	69748093	.	C	.	.	LowGQX	END=69748107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	69748108	.	G	.	.	LowGQX	END=69748173	GT	./.
chr2	69752155	.	C	.	.	LowGQX	END=69752254	GT	./.
chr2	69754347	.	C	.	.	LowGQX	END=69754451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	69757139	.	C	.	.	LowGQX	END=69757272	GT	./.
chr2	69757748	.	G	.	.	LowGQX	END=69757847	GT	./.
chr2	69759172	.	C	.	.	LowGQX	END=69759294	GT	./.
chr2	69769654	.	C	.	.	LowGQX	END=69769684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	69769685	.	G	.	.	LowGQX	END=69769705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	69769706	.	A	.	.	LowGQX	END=69769797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	69771527	.	C	.	.	LowGQX	END=69771676	GT	./.
chr2	69783991	.	C	.	.	LowGQX	END=69784110	GT	./.
chr2	69869979	.	T	.	.	LowGQX	END=69870172	GT	./.
chr2	70008653	.	A	.	.	LowGQX	END=70008752	GT	./.
chr2	70015180	.	G	.	.	LowGQX	END=70015279	GT	./.
chr2	70031663	.	A	.	.	LowGQX	END=70031762	GT	./.
chr2	70033515	.	A	.	.	LowGQX	END=70033632	GT	./.
chr2	70035034	.	T	.	.	LowGQX	END=70035133	GT	./.
chr2	70037716	.	C	.	.	LowGQX	END=70037815	GT	./.
chr2	70039764	.	A	.	.	LowGQX	END=70039788	GT	./.
chr2	70039789	.	G	.	.	LowGQX	END=70039790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70039791	.	A	.	.	LowGQX	.	GT	./.
chr2	70039792	.	G	.	.	LowGQX	END=70039863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70043230	.	C	.	.	LowGQX	END=70043329	GT	./.
chr2	70045729	.	A	.	.	LowGQX	END=70045828	GT	./.
chr2	70046392	.	T	.	.	LowGQX	END=70046491	GT	./.
chr2	70047829	.	A	.	.	LowGQX	END=70047955	GT	./.
chr2	70052516	.	G	.	.	LowGQX	END=70052667	GT	./.
chr2	70057023	.	C	.	.	LowGQX	END=70057126	GT	./.
chr2	70057127	.	G	.	.	LowGQX	END=70057193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70057194	.	G	.	.	LowGQX	.	GT	./.
chr2	70057195	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70057196	.	T	.	.	LowGQX	.	GT	./.
chr2	70057197	.	C	.	.	LowGQX	END=70057200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70057201	.	C	.	.	LowGQX	.	GT	./.
chr2	70057202	.	T	.	.	LowGQX	END=70057209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70057210	.	T	.	.	LowGQX	.	GT	./.
chr2	70057211	.	C	.	.	LowGQX	END=70057236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70057237	.	T	.	.	LowGQX	.	GT	./.
chr2	70057238	.	G	.	.	LowGQX	END=70057241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70057242	.	A	.	.	LowGQX	.	GT	./.
chr2	70057243	.	G	.	.	LowGQX	END=70057286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70064677	.	A	.	.	LowGQX	END=70064846	GT	./.
chr2	70066587	.	A	.	.	LowGQX	END=70066687	GT	./.
chr2	70068072	.	A	.	.	LowGQX	END=70068173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70070279	.	A	.	.	LowGQX	END=70070395	GT	./.
chr2	70071246	.	A	.	.	LowGQX	END=70071345	GT	./.
chr2	70074613	.	C	.	.	LowGQX	END=70074614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70074615	.	A	.	.	LowGQX	.	GT	./.
chr2	70074616	.	C	.	.	LowGQX	END=70074622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70074623	.	C	.	.	LowGQX	.	GT	./.
chr2	70074624	.	C	.	.	LowGQX	END=70074630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70074631	.	C	.	.	LowGQX	.	GT	./.
chr2	70074632	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70074633	.	G	.	.	LowGQX	.	GT	./.
chr2	70074634	.	T	.	.	LowGQX	END=70074636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70074637	.	C	.	.	LowGQX	.	GT	./.
chr2	70074638	.	T	.	.	LowGQX	END=70074646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70074647	.	G	.	.	LowGQX	.	GT	./.
chr2	70074648	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70074649	.	T	.	.	LowGQX	.	GT	./.
chr2	70074650	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70074651	.	A	.	.	LowGQX	.	GT	./.
chr2	70074652	.	C	.	.	LowGQX	END=70074665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70074666	.	C	.	.	LowGQX	.	GT	./.
chr2	70074667	.	C	.	.	LowGQX	END=70074675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70074676	.	A	.	.	LowGQX	.	GT	./.
chr2	70074677	.	T	.	.	LowGQX	END=70074679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70074680	.	A	.	.	LowGQX	.	GT	./.
chr2	70074681	.	T	.	.	LowGQX	END=70074689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70074690	.	A	.	.	LowGQX	.	GT	./.
chr2	70074691	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70074692	.	A	.	.	LowGQX	.	GT	./.
chr2	70074693	.	G	.	.	LowGQX	END=70074694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70074695	.	T	.	.	LowGQX	.	GT	./.
chr2	70074696	.	C	.	.	LowGQX	END=70074731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70074732	.	G	.	.	LowGQX	.	GT	./.
chr2	70074733	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70074734	.	T	.	.	LowGQX	END=70074735	GT	./.
chr2	70074736	.	G	.	.	LowGQX	END=70074744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70074745	.	A	.	.	LowGQX	END=70074767	GT	./.
chr2	70076780	.	T	.	.	LowGQX	END=70076847	GT	./.
chr2	70076848	.	A	.	.	LowGQX	END=70076855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70076856	.	T	.	.	LowGQX	.	GT	./.
chr2	70076857	.	T	.	.	LowGQX	END=70076879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70081953	.	A	.	.	LowGQX	END=70082132	GT	./.
chr2	70088395	.	A	.	.	LowGQX	END=70088494	GT	./.
chr2	70092020	.	G	.	.	LowGQX	END=70092119	GT	./.
chr2	70096849	.	A	.	.	LowGQX	END=70096998	GT	./.
chr2	70098871	.	T	.	.	LowGQX	END=70099024	GT	./.
chr2	70105979	.	C	.	.	LowGQX	END=70106138	GT	./.
chr2	70121024	.	C	.	.	LowGQX	END=70121183	GT	./.
chr2	70122224	.	A	.	.	LowGQX	END=70122348	GT	./.
chr2	70123565	.	T	.	.	LowGQX	END=70123682	GT	./.
chr2	70124499	.	T	.	.	LowGQX	END=70124598	GT	./.
chr2	70130296	.	T	.	.	LowGQX	END=70130395	GT	./.
chr2	70131384	.	A	.	.	LowGQX	END=70131553	GT	./.
chr2	70142390	.	A	.	.	LowGQX	END=70142451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70142452	.	C	.	.	LowGQX	END=70142549	GT	./.
chr2	70143201	.	G	.	.	LowGQX	END=70143354	GT	./.
chr2	70148833	.	A	.	.	LowGQX	END=70148920	GT	./.
chr2	70148921	.	G	.	.	LowGQX	END=70148924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70148925	.	G	.	.	LowGQX	.	GT	./.
chr2	70148926	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70148927	.	G	.	.	LowGQX	.	GT	./.
chr2	70148928	.	G	.	.	LowGQX	END=70148932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70162481	.	A	.	.	LowGQX	END=70162599	GT	./.
chr2	70164115	.	G	.	.	LowGQX	END=70164214	GT	./.
chr2	70164365	.	A	.	.	LowGQX	END=70164528	GT	./.
chr2	70165227	.	A	.	.	LowGQX	END=70165418	GT	./.
chr2	70187787	.	T	.	.	PASS	END=70187806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr2	70187807	.	C	.	.	PASS	END=70187832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr2	70187833	.	C	.	.	PASS	END=70187972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr2	70187973	.	A	.	.	PASS	END=70188041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr2	70188042	.	G	.	.	PASS	END=70188191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr2	70188192	.	A	.	.	PASS	END=70188437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr2	70188438	.	T	.	.	PASS	END=70188563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr2	70188564	.	G	.	.	PASS	END=70188675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr2	70188676	.	T	C	2896.02	PASS	BaseQRankSum=1.105;DP=227;Dels=0.00;FS=8.714;HRun=0;HaplotypeScore=18.0442;MQ=60;MQ0=0;MQRankSum=0.997;QD=12.76;ReadPosRankSum=1.216;SB=-908.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:115,110:227:99:2926,0,2521:60:99:0.489
chr2	70188677	.	G	.	.	PASS	END=70188732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr2	70188733	.	T	.	.	PASS	END=70188781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	70188782	.	A	.	.	PASS	END=70188822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	70190352	.	C	.	.	LowGQX	END=70190632	GT	./.
chr2	70191363	.	C	.	.	LowGQX	END=70191496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70191497	.	T	.	.	LowGQX	END=70191559	GT	./.
chr2	70215873	.	C	.	.	LowGQX	END=70215896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70215897	.	A	.	.	LowGQX	END=70215972	GT	./.
chr2	70223797	.	T	.	.	LowGQX	END=70223835	GT	./.
chr2	70223836	.	T	.	.	LowGQX	END=70223846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70223847	.	C	.	.	LowGQX	.	GT	./.
chr2	70223848	.	A	.	.	LowGQX	END=70223861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70223862	.	T	.	.	LowGQX	.	GT	./.
chr2	70223863	.	C	.	.	LowGQX	END=70223866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70223867	.	G	.	.	LowGQX	.	GT	./.
chr2	70223868	.	G	.	.	LowGQX	END=70223870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70223871	.	A	.	.	LowGQX	.	GT	./.
chr2	70223872	.	C	.	.	LowGQX	END=70223874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70223875	.	T	.	.	LowGQX	.	GT	./.
chr2	70223876	.	C	.	.	LowGQX	END=70223887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70223888	.	G	.	.	LowGQX	.	GT	./.
chr2	70223889	.	A	.	.	LowGQX	END=70223891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70223892	.	C	.	.	LowGQX	.	GT	./.
chr2	70223893	.	T	.	.	LowGQX	END=70223896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70314874	.	C	.	.	LowGQX	END=70315948	GT	./.
chr2	70377486	.	C	.	.	LowGQX	END=70377633	GT	./.
chr2	70377634	.	G	.	.	LowGQX	END=70377635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70377636	.	A	.	.	LowGQX	.	GT	./.
chr2	70377637	.	T	.	.	LowGQX	END=70377648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70377649	.	A	.	.	LowGQX	.	GT	./.
chr2	70377650	.	C	.	.	LowGQX	END=70377662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70377663	.	G	.	.	LowGQX	.	GT	./.
chr2	70377664	.	G	.	.	LowGQX	END=70377669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70377670	.	G	.	.	LowGQX	.	GT	./.
chr2	70377671	.	C	.	.	LowGQX	END=70377673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70377674	.	C	.	.	LowGQX	.	GT	./.
chr2	70377675	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70377676	.	T	.	.	LowGQX	.	GT	./.
chr2	70377677	.	T	.	.	LowGQX	END=70377680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70377681	.	T	.	.	LowGQX	.	GT	./.
chr2	70377682	.	C	.	.	LowGQX	END=70377684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70377685	.	G	.	.	LowGQX	.	GT	./.
chr2	70377686	.	G	.	.	LowGQX	END=70377693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70377694	.	T	.	.	LowGQX	END=70377695	GT	./.
chr2	70377696	.	C	.	.	LowGQX	END=70377698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70387755	.	A	.	.	LowGQX	END=70387921	GT	./.
chr2	70392222	.	A	.	.	LowGQX	END=70392271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70392272	.	C	.	.	LowGQX	.	GT	./.
chr2	70392273	.	C	.	.	LowGQX	END=70392278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70392279	.	T	.	.	LowGQX	.	GT	./.
chr2	70392280	.	A	.	.	LowGQX	END=70392290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70392291	.	G	.	.	LowGQX	.	GT	./.
chr2	70392292	.	T	.	.	LowGQX	END=70392298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70392299	.	T	.	.	LowGQX	.	GT	./.
chr2	70392300	.	G	.	.	LowGQX	END=70392306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70392307	.	C	.	.	LowGQX	.	GT	./.
chr2	70392308	.	A	.	.	LowGQX	END=70392313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70392314	.	C	.	.	LowGQX	END=70392326	GT	./.
chr2	70392658	.	A	.	.	LowGQX	END=70392769	GT	./.
chr2	70396687	.	A	.	.	LowGQX	END=70396795	GT	./.
chr2	70402803	.	A	.	.	LowGQX	END=70402887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70402888	.	A	.	.	LowGQX	.	GT	./.
chr2	70402889	.	G	.	.	LowGQX	END=70402911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70406662	.	A	.	.	LowGQX	END=70406776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70408293	.	A	.	.	LowGQX	END=70408584	GT	./.
chr2	70408585	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70408586	.	C	.	.	LowGQX	.	GT	./.
chr2	70408587	.	T	.	.	LowGQX	END=70408589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70408590	.	G	.	.	LowGQX	.	GT	./.
chr2	70408591	.	G	.	.	LowGQX	END=70408616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70408617	.	C	.	.	LowGQX	.	GT	./.
chr2	70408618	.	T	.	.	LowGQX	END=70408623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70408624	.	G	.	.	LowGQX	.	GT	./.
chr2	70408625	.	T	.	.	LowGQX	END=70408631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70408632	.	G	.	.	LowGQX	.	GT	./.
chr2	70408633	.	G	.	.	LowGQX	END=70408646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70408647	.	A	.	.	LowGQX	.	GT	./.
chr2	70408648	.	T	.	.	LowGQX	END=70408653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70408654	.	A	.	.	LowGQX	.	GT	./.
chr2	70408655	.	C	.	.	LowGQX	END=70408673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70408674	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	70408675	.	G	.	.	LowGQX	END=70408722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	70408723	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	70408724	.	G	.	.	LowGQX	END=70408733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	70408734	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	70408735	.	A	.	.	LowGQX	END=70408796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70408797	.	G	.	.	LowGQX	END=70408809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	70408810	.	T	.	.	LowGQX	END=70408862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70408863	.	A	T	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr2	70408864	.	T	.	.	LowGQX	END=70408869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	70408870	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:33,0,30:60:5:0.500
chr2	70408871	.	C	.	.	LowGQX	END=70408885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70408886	.	G	.	.	LowGQX	END=70408959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	70408960	.	T	.	.	LowGQX	END=70409059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70409060	.	C	.	.	LowGQX	END=70409119	GT	./.
chr2	70439849	.	A	.	.	LowGQX	END=70439979	GT	./.
chr2	70441479	.	A	.	.	LowGQX	END=70441628	GT	./.
chr2	70442451	.	A	.	.	LowGQX	END=70442628	GT	./.
chr2	70443278	.	T	.	.	LowGQX	END=70443432	GT	./.
chr2	70443534	.	A	.	.	LowGQX	END=70443633	GT	./.
chr2	70443865	.	C	.	.	LowGQX	END=70444099	GT	./.
chr2	70444100	.	C	.	.	LowGQX	END=70444128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70451647	.	C	.	.	LowGQX	END=70451716	GT	./.
chr2	70451717	.	C	.	.	LowGQX	END=70451763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70452459	.	C	.	.	LowGQX	END=70452534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70452535	.	A	.	.	LowGQX	END=70452558	GT	./.
chr2	70454861	.	A	.	.	LowGQX	END=70454960	GT	./.
chr2	70455476	.	C	.	.	LowGQX	END=70455594	GT	./.
chr2	70456158	.	G	.	.	LowGQX	END=70456257	GT	./.
chr2	70456346	.	C	.	.	LowGQX	END=70456452	GT	./.
chr2	70457886	.	A	.	.	LowGQX	END=70457988	GT	./.
chr2	70463209	.	A	.	.	LowGQX	END=70463212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70463213	.	C	.	.	LowGQX	.	GT	./.
chr2	70463214	.	C	.	.	LowGQX	END=70463226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70463227	.	C	.	.	LowGQX	END=70463228	GT	./.
chr2	70463229	.	G	.	.	LowGQX	END=70463235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70463236	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr2	70463237	.	A	.	.	LowGQX	END=70463272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70463273	.	C	.	.	LowGQX	.	GT	./.
chr2	70463274	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70463275	.	T	.	.	LowGQX	.	GT	./.
chr2	70463276	.	C	.	.	LowGQX	END=70463288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70463289	.	G	.	.	LowGQX	.	GT	./.
chr2	70463290	.	G	.	.	LowGQX	END=70463304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70463305	.	T	.	.	LowGQX	.	GT	./.
chr2	70463306	.	A	.	.	LowGQX	END=70463309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70475535	.	A	.	.	LowGQX	END=70475636	GT	./.
chr2	70475637	.	T	.	.	LowGQX	END=70475644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70475645	.	C	.	.	LowGQX	.	GT	./.
chr2	70475646	.	A	.	.	LowGQX	END=70475655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70475656	.	G	.	.	LowGQX	.	GT	./.
chr2	70475657	.	G	.	.	LowGQX	END=70475670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70475671	.	C	.	.	LowGQX	.	GT	./.
chr2	70475672	.	A	.	.	LowGQX	END=70475676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70485243	.	A	.	.	LowGQX	.	GT	./.
chr2	70485244	.	G	.	.	LowGQX	END=70485339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70485340	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	70485341	.	G	.	.	LowGQX	END=70485347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70485348	.	T	.	.	LowGQX	.	GT	./.
chr2	70485349	.	T	.	.	LowGQX	END=70485351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70485352	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	70485353	.	G	.	.	LowGQX	END=70485358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70485359	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	70485360	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	70485361	.	G	.	.	LowGQX	END=70485365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70485366	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	70485367	.	G	.	.	LowGQX	END=70485383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70485384	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	70485385	.	T	.	.	LowGQX	END=70485388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70485389	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	70485390	.	G	.	.	LowGQX	END=70485393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70485394	.	C	.	.	LowGQX	.	GT	./.
chr2	70485395	.	G	.	.	LowGQX	END=70485396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70485397	.	C	.	.	LowGQX	.	GT	./.
chr2	70485398	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70485399	.	G	.	.	LowGQX	.	GT	./.
chr2	70485400	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70485401	.	T	.	.	LowGQX	.	GT	./.
chr2	70485402	.	A	.	.	LowGQX	END=70485404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70485405	.	A	.	.	LowGQX	END=70485408	GT	./.
chr2	70485409	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70485410	.	T	.	.	LowGQX	.	GT	./.
chr2	70486490	.	A	.	.	LowGQX	END=70486641	GT	./.
chr2	70486642	.	G	.	.	LowGQX	END=70486700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70488342	.	A	.	.	LowGQX	END=70488520	GT	./.
chr2	70502089	.	A	.	.	LowGQX	END=70502110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr2	70502111	.	A	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr2	70502112	.	T	.	.	LowGQX	END=70502114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	70502115	.	C	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr2	70502116	.	T	.	.	LowGQX	END=70502118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	70502119	.	G	.	10.71	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:0.05:60:0
chr2	70502120	.	C	.	.	LowGQX	END=70502125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	70502126	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	70502127	.	T	.	.	LowGQX	END=70502128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	70502129	.	G	T	3.07	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.02;ReadPosRankSum=0.736;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.11:30,0,39:60:3:0.333
chr2	70502130	.	T	.	.	LowGQX	END=70502133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	70502134	.	G	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr2	70502135	.	A	.	.	LowGQX	END=70502142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	70502143	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	70502144	.	T	.	.	LowGQX	END=70502168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70502169	.	C	A	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:2:3.01:39,3,0:60:3:1.000
chr2	70502170	.	C	.	.	LowGQX	END=70502178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70502179	.	C	.	10.70	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.05:60:0
chr2	70502180	.	T	.	.	LowGQX	END=70502182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	70502183	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	70502184	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr2	70502185	.	C	.	.	LowGQX	END=70502304	GT	./.
chr2	70502644	.	A	.	.	LowGQX	.	GT	./.
chr2	70502645	.	G	.	.	LowGQX	END=70502649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70502650	.	G	.	.	LowGQX	.	GT	./.
chr2	70502651	.	G	.	.	LowGQX	END=70502653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70502654	.	T	.	.	LowGQX	.	GT	./.
chr2	70502655	.	C	.	.	LowGQX	END=70502660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70502661	.	C	.	.	LowGQX	END=70502662	GT	./.
chr2	70502663	.	T	.	.	LowGQX	END=70502666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70502667	.	C	.	.	LowGQX	.	GT	./.
chr2	70502668	.	T	.	.	LowGQX	END=70502676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70502677	.	C	.	.	LowGQX	.	GT	./.
chr2	70502678	.	C	.	.	LowGQX	END=70502683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70502684	.	G	.	.	LowGQX	.	GT	./.
chr2	70502685	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70502686	.	A	.	.	LowGQX	.	GT	./.
chr2	70502687	.	G	.	.	LowGQX	END=70502714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70502715	.	C	.	.	LowGQX	.	GT	./.
chr2	70502716	.	A	.	.	LowGQX	END=70502722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70502723	.	C	.	.	LowGQX	.	GT	./.
chr2	70502724	.	T	.	.	LowGQX	END=70502725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70502726	.	C	.	.	LowGQX	END=70502800	GT	./.
chr2	70503864	.	A	.	.	LowGQX	END=70504526	GT	./.
chr2	70508742	.	G	.	.	LowGQX	END=70508767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70508768	.	A	.	.	LowGQX	END=70508841	GT	./.
chr2	70514396	.	C	.	.	LowGQX	END=70514503	GT	./.
chr2	70515198	.	A	.	.	LowGQX	END=70515326	GT	./.
chr2	70516444	.	A	.	.	LowGQX	END=70516543	GT	./.
chr2	70520239	.	G	.	.	LowGQX	END=70520308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70520309	.	G	.	.	LowGQX	END=70520338	GT	./.
chr2	70520716	.	T	.	.	LowGQX	END=70520815	GT	./.
chr2	70524419	.	T	.	.	LowGQX	END=70524441	GT	./.
chr2	70524442	.	A	.	.	LowGQX	END=70524468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70524469	.	T	.	.	LowGQX	.	GT	./.
chr2	70524470	.	G	.	.	LowGQX	END=70524473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70524474	.	T	.	.	LowGQX	.	GT	./.
chr2	70524475	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70524476	.	A	.	.	LowGQX	.	GT	./.
chr2	70524477	.	G	.	.	LowGQX	END=70524478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70524479	.	T	.	.	LowGQX	.	GT	./.
chr2	70524480	.	G	.	.	LowGQX	END=70524499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70524500	.	T	.	.	LowGQX	.	GT	./.
chr2	70524501	.	T	.	.	LowGQX	END=70524503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70524504	.	T	.	.	LowGQX	.	GT	./.
chr2	70524505	.	C	.	.	LowGQX	END=70524523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70524524	.	T	.	.	LowGQX	.	GT	./.
chr2	70524525	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70524526	.	C	.	.	LowGQX	.	GT	./.
chr2	70524527	.	T	.	.	LowGQX	END=70524591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70524592	.	G	.	.	LowGQX	END=70524611	GT	./.
chr2	70527970	.	A	.	.	LowGQX	END=70527974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70527975	.	G	.	.	LowGQX	.	GT	./.
chr2	70527976	.	A	.	.	LowGQX	END=70527978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70527979	.	T	.	.	LowGQX	END=70527980	GT	./.
chr2	70527981	.	C	.	.	LowGQX	END=70527989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70527990	.	A	.	.	LowGQX	.	GT	./.
chr2	70527991	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70527992	.	T	.	.	LowGQX	.	GT	./.
chr2	70527993	.	G	.	.	LowGQX	END=70527994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70527995	.	T	.	.	LowGQX	.	GT	./.
chr2	70527996	.	G	.	.	LowGQX	END=70528000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528001	.	A	.	.	LowGQX	END=70528002	GT	./.
chr2	70528003	.	G	.	.	LowGQX	END=70528005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528006	.	T	.	.	LowGQX	END=70528008	GT	./.
chr2	70528009	.	G	.	.	LowGQX	END=70528011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528012	.	T	.	.	LowGQX	.	GT	./.
chr2	70528013	.	G	.	.	LowGQX	END=70528031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528032	.	G	.	.	LowGQX	.	GT	./.
chr2	70528033	.	C	.	.	LowGQX	END=70528035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528036	.	T	.	.	LowGQX	.	GT	./.
chr2	70528037	.	C	.	.	LowGQX	END=70528039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528040	.	T	.	.	LowGQX	.	GT	./.
chr2	70528041	.	G	.	.	LowGQX	END=70528053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528054	.	T	.	.	LowGQX	END=70528114	GT	./.
chr2	70528539	.	C	.	.	LowGQX	END=70528690	GT	./.
chr2	70528691	.	G	.	.	LowGQX	END=70528699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528700	.	G	.	.	LowGQX	END=70528701	GT	./.
chr2	70528702	.	T	.	.	LowGQX	END=70528708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528709	.	G	.	.	LowGQX	.	GT	./.
chr2	70528710	.	C	.	.	LowGQX	END=70528711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528712	.	T	.	.	LowGQX	.	GT	./.
chr2	70528713	.	C	.	.	LowGQX	END=70528714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528715	.	G	.	.	LowGQX	.	GT	./.
chr2	70528716	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528717	.	T	.	.	LowGQX	.	GT	./.
chr2	70528718	.	G	.	.	LowGQX	END=70528724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528725	.	G	T	9.30	LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=-0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:30.11:39,0,30:60:9:0.667
chr2	70528726	.	G	.	.	LowGQX	END=70528836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	70528837	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	70528838	.	G	.	.	LowGQX	END=70528867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70528868	.	C	.	.	LowGQX	END=70528919	GT	./.
chr2	70528920	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528921	.	C	.	.	LowGQX	.	GT	./.
chr2	70528922	.	C	.	.	LowGQX	END=70528929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528930	.	C	.	.	LowGQX	.	GT	./.
chr2	70528931	.	C	.	.	LowGQX	END=70528932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528933	.	A	.	.	LowGQX	END=70528935	GT	./.
chr2	70528936	.	G	.	.	LowGQX	END=70528943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528944	.	C	.	.	LowGQX	END=70528945	GT	./.
chr2	70528946	.	C	.	.	LowGQX	END=70528947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528948	.	C	.	.	LowGQX	.	GT	./.
chr2	70528949	.	G	.	.	LowGQX	END=70528952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528953	.	T	.	.	LowGQX	.	GT	./.
chr2	70528954	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528955	.	C	.	.	LowGQX	.	GT	./.
chr2	70528956	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528957	.	G	.	.	LowGQX	.	GT	./.
chr2	70528958	.	G	.	.	LowGQX	END=70528966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528967	.	T	.	.	LowGQX	.	GT	./.
chr2	70528968	.	G	.	.	LowGQX	END=70528969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528970	.	A	.	.	LowGQX	END=70528972	GT	./.
chr2	70528973	.	G	.	.	LowGQX	END=70528980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528981	.	T	.	.	LowGQX	.	GT	./.
chr2	70528982	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528983	.	G	.	.	LowGQX	END=70528984	GT	./.
chr2	70528985	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528986	.	T	.	.	LowGQX	END=70528989	GT	./.
chr2	70528990	.	G	.	.	LowGQX	END=70528998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70528999	.	A	.	.	LowGQX	.	GT	./.
chr2	70529000	.	A	.	.	LowGQX	END=70529003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70529004	.	C	.	.	LowGQX	.	GT	./.
chr2	70529005	.	C	.	.	LowGQX	END=70529011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70529012	.	C	.	.	LowGQX	.	GT	./.
chr2	70529013	.	C	.	.	LowGQX	END=70529017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70529018	.	G	.	.	LowGQX	.	GT	./.
chr2	70529019	.	C	.	.	LowGQX	END=70529023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70529024	.	A	.	.	LowGQX	END=70529025	GT	./.
chr2	70529026	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70529027	.	G	.	.	LowGQX	.	GT	./.
chr2	70529028	.	G	.	.	LowGQX	END=70529030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70529031	.	T	.	.	LowGQX	END=70529032	GT	./.
chr2	70529033	.	C	.	.	LowGQX	END=70529036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70529037	.	T	.	.	LowGQX	END=70529038	GT	./.
chr2	70529039	.	C	.	.	LowGQX	END=70529045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70529046	.	A	.	.	LowGQX	.	GT	./.
chr2	70529047	.	G	.	.	LowGQX	END=70529050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70529051	.	C	.	.	LowGQX	.	GT	./.
chr2	70529052	.	G	.	.	LowGQX	END=70529057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70529058	.	T	.	.	LowGQX	END=70529059	GT	./.
chr2	70529060	.	C	.	.	LowGQX	END=70529070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70529071	.	T	.	.	LowGQX	END=70529145	GT	./.
chr2	70676696	.	A	.	.	LowGQX	END=70676795	GT	./.
chr2	70677945	.	A	.	.	LowGQX	END=70678044	GT	./.
chr2	70678836	.	T	.	.	LowGQX	END=70678935	GT	./.
chr2	70680348	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680349	.	C	.	.	LowGQX	.	GT	./.
chr2	70680350	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680351	.	T	.	.	LowGQX	.	GT	./.
chr2	70680352	.	G	.	.	LowGQX	END=70680354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680355	.	T	.	.	LowGQX	END=70680356	GT	./.
chr2	70680357	.	T	.	.	LowGQX	END=70680360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680361	.	T	.	.	LowGQX	.	GT	./.
chr2	70680362	.	G	.	.	LowGQX	END=70680363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680364	.	C	.	.	LowGQX	.	GT	./.
chr2	70680365	.	A	.	.	LowGQX	END=70680367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680368	.	A	.	.	LowGQX	.	GT	./.
chr2	70680369	.	A	.	.	LowGQX	END=70680373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680374	.	T	.	.	LowGQX	.	GT	./.
chr2	70680375	.	T	.	.	LowGQX	END=70680377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680378	.	T	.	.	LowGQX	.	GT	./.
chr2	70680379	.	C	.	.	LowGQX	END=70680384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680385	.	A	.	.	LowGQX	.	GT	./.
chr2	70680386	.	G	.	.	LowGQX	END=70680392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680393	.	G	.	.	LowGQX	END=70680394	GT	./.
chr2	70680395	.	T	.	.	LowGQX	END=70680399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680400	.	T	.	.	LowGQX	.	GT	./.
chr2	70680401	.	T	.	.	LowGQX	END=70680402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680403	.	T	.	.	LowGQX	.	GT	./.
chr2	70680404	.	C	.	.	LowGQX	END=70680405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680406	.	T	.	.	LowGQX	.	GT	./.
chr2	70680407	.	G	.	.	LowGQX	END=70680417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680418	.	A	.	.	LowGQX	.	GT	./.
chr2	70680419	.	G	.	.	LowGQX	END=70680435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680436	.	C	.	.	LowGQX	.	GT	./.
chr2	70680437	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680438	.	G	.	.	LowGQX	.	GT	./.
chr2	70680439	.	T	.	.	LowGQX	END=70680440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680441	.	T	.	.	LowGQX	.	GT	./.
chr2	70680442	.	T	.	.	LowGQX	END=70680447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680448	.	A	.	.	LowGQX	.	GT	./.
chr2	70680449	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680450	.	C	.	.	LowGQX	.	GT	./.
chr2	70680451	.	T	.	.	LowGQX	END=70680456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70680457	.	C	.	.	LowGQX	.	GT	./.
chr2	70680458	.	A	.	.	LowGQX	END=70680461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70683469	.	A	.	.	LowGQX	END=70683622	GT	./.
chr2	70692746	.	A	.	.	LowGQX	END=70692870	GT	./.
chr2	70741908	.	G	.	.	LowGQX	END=70742067	GT	./.
chr2	70780295	.	G	.	.	LowGQX	END=70780394	GT	./.
chr2	70780770	.	C	.	.	LowGQX	END=70780929	GT	./.
chr2	70890555	.	A	.	.	LowGQX	END=70890869	GT	./.
chr2	70900008	.	A	.	.	LowGQX	END=70900140	GT	./.
chr2	70900371	.	A	.	.	LowGQX	END=70900471	GT	./.
chr2	70900472	.	G	.	.	LowGQX	END=70900479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70901808	.	A	.	.	LowGQX	END=70901843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70901844	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	70901845	.	T	.	.	LowGQX	END=70901847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70901848	.	T	.	.	LowGQX	.	GT	./.
chr2	70901849	.	A	.	.	LowGQX	END=70901873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70901874	.	T	.	.	LowGQX	.	GT	./.
chr2	70901875	.	T	.	.	LowGQX	END=70901930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70901931	.	C	.	.	LowGQX	END=70901959	GT	./.
chr2	70903840	.	C	.	.	LowGQX	END=70904019	GT	./.
chr2	70904888	.	A	.	.	LowGQX	END=70905011	GT	./.
chr2	70905834	.	A	.	.	LowGQX	END=70905872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70905873	.	A	.	.	LowGQX	.	GT	./.
chr2	70905874	.	C	.	.	LowGQX	END=70905910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70905911	.	C	.	.	LowGQX	.	GT	./.
chr2	70905912	.	G	.	.	LowGQX	END=70905921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70905922	.	A	.	.	LowGQX	.	GT	./.
chr2	70905923	.	G	.	.	LowGQX	END=70905927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70905928	.	T	.	.	LowGQX	.	GT	./.
chr2	70905929	.	C	.	.	LowGQX	END=70905933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70905934	.	C	.	.	LowGQX	.	GT	./.
chr2	70905935	.	C	.	.	LowGQX	END=70906086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70906087	.	T	.	.	LowGQX	END=70906095	GT	./.
chr2	70910721	.	A	.	.	LowGQX	END=70910807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70910808	.	C	.	.	LowGQX	END=70910901	GT	./.
chr2	70915154	.	A	.	.	LowGQX	END=70915256	GT	./.
chr2	70917916	.	A	.	.	LowGQX	END=70918063	GT	./.
chr2	70919533	.	A	.	.	LowGQX	END=70919556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70919557	.	A	.	.	LowGQX	END=70919686	GT	./.
chr2	70922841	.	G	.	.	LowGQX	END=70922940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70923375	.	A	.	.	LowGQX	END=70923415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70923416	.	G	.	.	LowGQX	.	GT	./.
chr2	70923417	.	T	.	.	LowGQX	END=70923434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70923435	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	70923436	.	T	.	.	LowGQX	END=70923443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70923444	.	T	.	.	LowGQX	END=70923530	GT	./.
chr2	70931451	.	A	.	.	LowGQX	END=70931518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	70931519	.	C	.	.	LowGQX	END=70931593	GT	./.
chr2	70933356	.	A	.	.	LowGQX	END=70933516	GT	./.
chr2	70933517	.	C	.	.	LowGQX	END=70933574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	70994975	.	G	.	.	LowGQX	END=70995074	GT	./.
chr2	71004437	.	T	.	114.25	PASS	DP=84;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:64:84:84.26:60:84
chr2	71004438	.	C	.	.	PASS	END=71004447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:96:60
chr2	71004448	.	C	.	89.99	PASS	DP=81;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:57:81:60:60:60
chr2	71004449	.	A	.	.	PASS	END=71004468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:96:60
chr2	71004469	.	C	.	150.51	PASS	DP=99;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:75:99:99:60:99
chr2	71004470	.	T	.	.	PASS	END=71004536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	71004696	.	G	.	.	PASS	END=71004761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	71004762	.	G	.	.	PASS	END=71004803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	71012546	.	C	.	.	PASS	END=71012575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr2	71012576	.	T	.	.	PASS	END=71012598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr2	71012599	.	C	.	.	PASS	END=71012612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	71012613	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:60:60
chr2	71012614	.	T	.	.	PASS	END=71012649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	71012650	.	T	.	.	PASS	END=71012732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	71012733	.	A	.	.	PASS	END=71012751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	71012752	.	T	.	.	PASS	END=71012771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr2	71014770	.	T	.	.	PASS	END=71014818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	71014819	.	C	.	.	PASS	END=71014847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	71014848	.	A	.	.	PASS	END=71014933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	71017539	.	C	.	.	PASS	END=71017572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr2	71017573	.	C	.	.	PASS	END=71017672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	71017673	.	T	.	.	PASS	END=71017696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	71017697	.	A	.	.	PASS	END=71017720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	71017721	.	A	.	.	PASS	END=71017722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	71017723	.	C	.	.	PASS	END=71017744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr2	71017745	.	T	.	.	PASS	END=71017752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr2	71017753	.	G	.	.	PASS	END=71017765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr2	71017766	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:63:60
chr2	71017767	.	C	.	.	PASS	END=71017770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr2	71036202	.	T	.	.	LowGQX	END=71036225	GT	./.
chr2	71036226	.	G	.	.	LowGQX	END=71036267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71036268	.	G	.	.	LowGQX	.	GT	./.
chr2	71036269	.	T	.	.	LowGQX	END=71036279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71036280	.	G	.	.	LowGQX	.	GT	./.
chr2	71036281	.	A	.	.	LowGQX	END=71036311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71036312	.	T	.	.	LowGQX	.	GT	./.
chr2	71036313	.	T	.	.	LowGQX	END=71036375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71036376	.	C	.	.	LowGQX	END=71036377	GT	./.
chr2	71036378	.	G	.	.	LowGQX	END=71036381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71036382	.	G	.	.	LowGQX	.	GT	./.
chr2	71036383	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71036401	.	T	.	.	LowGQX	END=71036421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71036422	.	G	.	.	LowGQX	.	GT	./.
chr2	71036423	.	G	.	.	LowGQX	END=71036425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71036426	.	A	.	.	LowGQX	.	GT	./.
chr2	71036427	.	G	.	.	LowGQX	END=71036432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71036433	.	G	.	.	LowGQX	.	GT	./.
chr2	71036434	.	G	.	.	LowGQX	END=71036451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71036452	.	G	.	.	LowGQX	.	GT	./.
chr2	71036453	.	C	.	.	LowGQX	END=71036468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71036469	.	C	.	.	LowGQX	.	GT	./.
chr2	71036470	.	A	.	.	LowGQX	END=71036489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71036490	.	T	.	.	LowGQX	.	GT	./.
chr2	71036491	.	G	.	.	LowGQX	END=71036515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71036516	.	T	.	.	LowGQX	.	GT	./.
chr2	71036869	.	A	.	.	LowGQX	END=71036991	GT	./.
chr2	71039577	.	A	.	.	LowGQX	END=71039579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71039580	.	T	.	.	LowGQX	END=71039732	GT	./.
chr2	71043124	.	A	.	.	LowGQX	END=71043183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71043184	.	A	.	.	LowGQX	END=71043223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	71043224	.	T	.	.	LowGQX	END=71043258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043259	.	A	.	.	LowGQX	.	GT	./.
chr2	71043260	.	C	.	.	LowGQX	END=71043261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043262	.	G	.	.	LowGQX	.	GT	./.
chr2	71043263	.	G	.	.	LowGQX	END=71043274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043275	.	T	.	.	LowGQX	END=71043276	GT	./.
chr2	71043277	.	G	.	.	LowGQX	END=71043278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043279	.	T	.	.	LowGQX	END=71043280	GT	./.
chr2	71043281	.	T	.	.	LowGQX	END=71043282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043283	.	T	.	.	LowGQX	END=71043284	GT	./.
chr2	71043285	.	A	.	.	LowGQX	END=71043290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043291	.	G	.	.	LowGQX	END=71043293	GT	./.
chr2	71043294	.	T	.	.	LowGQX	END=71043295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043296	.	T	.	.	LowGQX	.	GT	./.
chr2	71043297	.	G	.	.	LowGQX	END=71043298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043299	.	G	.	.	LowGQX	.	GT	./.
chr2	71043300	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043301	.	A	.	.	LowGQX	.	GT	./.
chr2	71043302	.	G	.	.	LowGQX	END=71043304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043305	.	A	.	.	LowGQX	.	GT	./.
chr2	71043306	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043307	.	G	.	.	LowGQX	END=71043308	GT	./.
chr2	71043309	.	C	.	.	LowGQX	END=71043310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043311	.	G	.	.	LowGQX	.	GT	./.
chr2	71043312	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043313	.	A	.	.	LowGQX	.	GT	./.
chr2	71043314	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043315	.	C	.	.	LowGQX	END=71043316	GT	./.
chr2	71043317	.	T	.	.	LowGQX	END=71043319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043320	.	T	.	.	LowGQX	.	GT	./.
chr2	71043321	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043322	.	C	.	.	LowGQX	.	GT	./.
chr2	71043323	.	A	.	.	LowGQX	END=71043337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043338	.	G	.	.	LowGQX	.	GT	./.
chr2	71043339	.	T	.	.	LowGQX	END=71043344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043345	.	T	.	.	LowGQX	.	GT	./.
chr2	71043346	.	C	.	.	LowGQX	END=71043347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043348	.	C	.	.	LowGQX	END=71043349	GT	./.
chr2	71043350	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043351	.	T	.	.	LowGQX	END=71043353	GT	./.
chr2	71043354	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043355	.	G	.	.	LowGQX	END=71043358	GT	./.
chr2	71043359	.	T	.	.	LowGQX	END=71043360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043361	.	T	.	.	LowGQX	.	GT	./.
chr2	71043362	.	T	.	.	LowGQX	END=71043363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043364	.	C	.	.	LowGQX	.	GT	./.
chr2	71043365	.	A	.	.	LowGQX	END=71043371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043372	.	C	.	.	LowGQX	END=71043373	GT	./.
chr2	71043374	.	T	.	.	LowGQX	END=71043375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043376	.	T	.	.	LowGQX	.	GT	./.
chr2	71043377	.	A	.	.	LowGQX	END=71043380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043381	.	C	.	.	LowGQX	END=71043383	GT	./.
chr2	71043384	.	G	.	.	LowGQX	END=71043385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043386	.	A	.	.	LowGQX	END=71043388	GT	./.
chr2	71043389	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043390	.	G	.	.	LowGQX	.	GT	./.
chr2	71043391	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043392	.	G	.	.	LowGQX	END=71043393	GT	./.
chr2	71043394	.	A	.	.	LowGQX	END=71043398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043399	.	A	.	.	LowGQX	.	GT	./.
chr2	71043400	.	G	.	.	LowGQX	END=71043405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043406	.	C	.	.	LowGQX	.	GT	./.
chr2	71043407	.	A	.	.	LowGQX	END=71043412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043413	.	T	.	.	LowGQX	END=71043414	GT	./.
chr2	71043415	.	C	.	.	LowGQX	END=71043428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043429	.	A	.	.	LowGQX	END=71043431	GT	./.
chr2	71043432	.	C	.	.	LowGQX	END=71043438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043439	.	C	.	.	LowGQX	.	GT	./.
chr2	71043440	.	T	.	.	LowGQX	END=71043441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043442	.	A	.	.	LowGQX	.	GT	./.
chr2	71043443	.	G	.	.	LowGQX	END=71043452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043453	.	G	.	.	LowGQX	END=71043454	GT	./.
chr2	71043455	.	T	.	.	LowGQX	END=71043460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043461	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	71043462	.	G	.	.	LowGQX	END=71043469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043470	.	G	.	.	LowGQX	.	GT	./.
chr2	71043471	.	C	.	.	LowGQX	END=71043474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043475	.	T	.	.	LowGQX	.	GT	./.
chr2	71043476	.	T	.	.	LowGQX	END=71043481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043482	.	T	.	.	LowGQX	END=71043967	GT	./.
chr2	71043968	.	C	.	.	LowGQX	END=71043998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71043999	.	A	.	.	LowGQX	.	GT	./.
chr2	71044000	.	A	.	.	LowGQX	END=71044032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71044033	.	A	.	.	LowGQX	.	GT	./.
chr2	71044034	.	G	.	.	LowGQX	END=71044107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71044108	.	G	.	.	LowGQX	.	GT	./.
chr2	71044109	.	A	.	.	LowGQX	END=71044117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71044118	.	T	.	.	LowGQX	END=71044237	GT	./.
chr2	71044238	.	T	.	.	LowGQX	END=71044240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71044241	.	T	.	.	LowGQX	END=71044242	GT	./.
chr2	71044243	.	A	.	.	LowGQX	END=71044246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71046482	.	C	.	.	LowGQX	END=71046581	GT	./.
chr2	71046905	.	A	.	.	LowGQX	END=71047025	GT	./.
chr2	71047576	.	G	.	.	LowGQX	END=71047675	GT	./.
chr2	71058180	.	G	.	.	PASS	END=71058183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr2	71058184	.	C	T	658.82	PASS	BaseQRankSum=-0.053;DP=49;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=2.076;QD=13.45;ReadPosRankSum=0.500;SB=-405.22	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:18,30:49:99:689,0,417:60:99:0.625
chr2	71058185	.	G	.	.	PASS	END=71058241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr2	71058242	.	G	.	.	PASS	END=71058298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	71058299	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:99:60
chr2	71058300	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:64:60
chr2	71058301	.	A	.	.	PASS	END=71058331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr2	71058831	.	C	.	.	PASS	END=71058834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	71058835	.	A	G	874.03	PASS	BaseQRankSum=1.536;DP=86;Dels=0.00;FS=7.655;HRun=0;HaplotypeScore=6.6284;MQ=60;MQ0=0;MQRankSum=2.963;QD=10.16;ReadPosRankSum=1.781;SB=-426.49	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:50,36:86:99:904,0,1139:60:99:0.419
chr2	71058836	.	C	.	.	PASS	END=71058867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	71058868	.	A	.	.	PASS	END=71058947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	71058948	.	C	.	.	PASS	END=71058950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	71060030	.	C	.	.	PASS	END=71060041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	71060042	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:62:60
chr2	71060043	.	T	.	.	PASS	END=71060069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:93:60
chr2	71060070	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:66:72:60
chr2	71060071	.	C	.	.	PASS	END=71060091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	71060092	.	G	.	.	PASS	END=71060110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	71060111	.	G	A	1395.68	PASS	BaseQRankSum=1.743;DP=97;Dels=0.00;FS=0.840;HRun=2;HaplotypeScore=2.8935;MQ=60;MQ0=0;MQRankSum=-0.989;QD=14.39;ReadPosRankSum=0.707;SB=-532.40	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,53:97:99:1426,0,1129:60:99:0.546
chr2	71060112	.	A	.	.	PASS	END=71060182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	71060776	.	C	.	.	PASS	END=71060781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	71060782	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:63:60
chr2	71060783	.	G	.	.	PASS	END=71060805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	71060806	.	T	.	.	PASS	END=71060813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	71060814	.	G	.	.	PASS	END=71060935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	71060936	.	G	C	868.91	PASS	BaseQRankSum=2.045;DP=84;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=1.216;QD=10.34;ReadPosRankSum=0.793;SB=-441.65	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:47,37:84:99:899,0,1183:60:99:0.440
chr2	71060937	.	T	.	.	PASS	END=71060956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	71060957	.	T	.	.	PASS	END=71060979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr2	71060980	.	G	.	.	PASS	END=71060992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	71060993	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr2	71060994	.	C	.	.	PASS	END=71061000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr2	71061001	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:75:60
chr2	71061002	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:39:60
chr2	71061003	.	A	.	.	PASS	END=71061021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr2	71061022	.	A	.	.	PASS	END=71061038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	71061039	.	G	.	.	PASS	END=71061040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:75:60
chr2	71061041	.	C	.	.	PASS	END=71061042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr2	71061043	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:24:60
chr2	71061044	.	C	.	.	PASS	END=71061053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr2	71061054	.	T	.	.	PASS	END=71061055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr2	71061056	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:36:60
chr2	71061057	.	A	.	.	PASS	END=71061069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	71061070	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:18:60
chr2	71061071	.	G	.	.	PASS	END=71061073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr2	71061074	.	T	.	.	PASS	END=71061080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	71061081	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:63:60
chr2	71061082	.	T	.	.	PASS	END=71061115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	71061116	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:42:60
chr2	71061117	.	C	.	.	PASS	END=71061122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr2	71061123	.	A	.	.	PASS	END=71061132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	71061133	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:60
chr2	71061134	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr2	71061135	.	G	.	.	PASS	END=71061144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	71061145	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	71061146	.	G	.	.	PASS	END=71061150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	71061151	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr2	71062590	.	C	.	.	PASS	END=71062732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	71062733	.	G	.	.	PASS	END=71062777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	71062778	.	A	.	.	PASS	END=71062789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	71062833	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:125:99:60
chr2	71062833	.	G	GC	5174.33	PASS	DP=125;FS=0.000;HRun=1;HaplotypeScore=161.1083;MQ=60;MQ0=0;QD=41.39;SB=-2036.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:4,121:125:99:5174,367,0:60:99:0.968
chr2	71062834	.	C	.	.	PASS	END=71062921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	71062922	.	T	.	.	PASS	END=71062935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	71062936	.	C	.	.	PASS	END=71062939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	71127750	.	G	.	.	LowGQX	END=71128000	GT	./.
chr2	71148226	.	A	.	.	PASS	END=71148233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	71148234	.	A	.	.	PASS	END=71148238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr2	71148239	.	A	.	.	PASS	END=71148258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	71148259	.	G	.	.	PASS	END=71148282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	71148283	.	G	.	.	PASS	END=71148291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr2	71148292	.	G	.	.	PASS	END=71148329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr2	71148330	.	T	.	.	PASS	END=71148385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	71148386	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:75:60
chr2	71148387	.	C	.	.	PASS	END=71148417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr2	71159895	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:59
chr2	71159896	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:6:59
chr2	71159897	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:59
chr2	71159898	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:12:59
chr2	71159899	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:59
chr2	71159900	.	A	.	48.05	LowGQX	DP=10;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:18.05:59:18
chr2	71159901	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:59
chr2	71159902	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:59
chr2	71159903	.	G	.	.	LowGQX	END=71159904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:59
chr2	71159905	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:59
chr2	71159906	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:59
chr2	71159907	.	G	.	.	LowGQX	END=71159908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:59
chr2	71159909	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:59
chr2	71159910	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:21:59
chr2	71159911	.	C	.	48.05	LowGQX	DP=10;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:18.06:59:18
chr2	71159912	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:59
chr2	71159913	.	A	.	51.06	LowGQX	DP=10;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:21.07:59:21
chr2	71159914	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:59
chr2	71159915	.	A	.	15.07	LowGQX	DP=10;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:0.13:59:0
chr2	71159916	.	A	.	.	LowGQX	END=71159919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:59
chr2	71159920	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:59
chr2	71159921	.	C	.	.	LowGQX	END=71159923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:59
chr2	71159924	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:1:59
chr2	71159925	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:59
chr2	71159926	.	C	.	.	LowGQX	END=71159929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:59
chr2	71159930	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:59
chr2	71159931	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:4:59
chr2	71159932	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:59
chr2	71159933	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:18:59
chr2	71159934	.	A	.	.	LowGQX	END=71159940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:59
chr2	71159941	.	C	.	.	PASS	END=71159942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:59
chr2	71159943	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:17:59
chr2	71159944	.	G	.	.	LowGQX	END=71159945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:59
chr2	71159946	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:59
chr2	71159947	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:59
chr2	71159948	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:0:59
chr2	71159949	.	G	.	.	LowGQX	END=71159951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:59
chr2	71159952	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:20:59
chr2	71159953	.	C	.	.	PASS	END=71159954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:59
chr2	71159955	.	T	.	.	LowGQX	END=71159956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:59
chr2	71159957	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:59
chr2	71159958	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:59
chr2	71159959	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:30:59
chr2	71159960	.	A	.	.	LowGQX	END=71159962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:59
chr2	71159963	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:59
chr2	71159964	.	G	.	.	LowGQX	END=71159968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:59
chr2	71159969	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:59
chr2	71159970	.	C	.	.	LowGQX	END=71159980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:59
chr2	71159981	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:59
chr2	71159982	.	C	.	.	LowGQX	END=71159984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:59
chr2	71159985	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:59
chr2	71159986	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:59
chr2	71159987	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:59
chr2	71159988	.	C	.	.	LowGQX	END=71159989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:59
chr2	71159990	.	T	.	48.05	LowGQX	DP=10;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:18.06:59:18
chr2	71159991	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:59
chr2	71159992	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:59
chr2	71159993	.	G	.	.	LowGQX	END=71159996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:59
chr2	71159997	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr2	71159998	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr2	71159999	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr2	71160000	.	C	.	.	LowGQX	END=71160002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	71160003	.	A	.	.	LowGQX	END=71160009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr2	71160010	.	G	.	.	LowGQX	END=71160011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr2	71160012	.	G	.	.	LowGQX	END=71160014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr2	71160015	.	T	.	.	LowGQX	END=71160016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr2	71160017	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:60
chr2	71160018	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:60
chr2	71160019	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr2	71160020	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr2	71160021	.	A	.	.	LowGQX	END=71160023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	71160024	.	A	.	.	LowGQX	END=71160041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	71160042	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr2	71160043	.	G	.	.	LowGQX	END=71160047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	71160048	.	G	.	.	LowGQX	END=71160052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	71160053	.	C	.	.	LowGQX	END=71160056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr2	71160057	.	G	.	6.89	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.02:60:0
chr2	71160058	.	C	.	.	LowGQX	END=71160062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr2	71160063	.	T	.	.	LowGQX	END=71160066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	71160067	.	G	.	.	LowGQX	END=71160068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	71160069	.	T	.	.	LowGQX	END=71160112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71160113	.	T	.	.	LowGQX	.	GT	./.
chr2	71160114	.	C	.	.	LowGQX	END=71160132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71160133	.	C	.	.	LowGQX	.	GT	./.
chr2	71160134	.	T	.	.	LowGQX	END=71160137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71160138	.	C	.	.	LowGQX	.	GT	./.
chr2	71160139	.	C	.	.	LowGQX	END=71160144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71160145	.	C	.	.	LowGQX	.	GT	./.
chr2	71160146	.	C	.	.	LowGQX	END=71160213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71160214	.	C	.	.	LowGQX	END=71160242	GT	./.
chr2	71160243	.	G	.	.	LowGQX	END=71160285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71160286	.	A	G	44.20	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=22.10;SB=-34.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:75,6,0:60:6:1.000
chr2	71160287	.	G	.	.	LowGQX	END=71160296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	71160297	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	71160298	.	G	.	.	LowGQX	END=71160336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	71163034	.	C	.	.	PASS	END=71163042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr2	71163043	.	G	.	.	PASS	END=71163048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	71163049	.	G	.	.	PASS	END=71163050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr2	71163051	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:33:60
chr2	71163052	.	T	.	.	PASS	END=71163055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	71163056	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:30:60
chr2	71163057	.	C	.	.	PASS	END=71163069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr2	71163070	.	G	.	.	PASS	END=71163076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr2	71163077	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:68:60
chr2	71163078	.	C	.	.	PASS	END=71163085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	71163086	.	T	C	1369.69	PASS	BaseQRankSum=0.389;DP=54;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.8275;MQ=60;MQ0=0;MQRankSum=0.023;QD=25.36;ReadPosRankSum=-1.580;SB=-600.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,52:54:38.93:1403,39,0:60:39:0.963
chr2	71163087	.	G	.	.	PASS	END=71163104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	71163105	.	C	.	.	PASS	END=71163219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	71163220	.	C	.	.	PASS	END=71163224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	71163225	.	C	T	1587.78	PASS	BaseQRankSum=0.871;DP=64;Dels=0.00;FS=10.263;HRun=0;HaplotypeScore=21.9322;MQ=60;MQ0=0;MQRankSum=0.709;QD=24.81;ReadPosRankSum=0.263;SB=-475.90	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:2,59:64:73.74:1621,74,0:60:74:0.967
chr2	71163226	.	G	.	.	PASS	END=71163244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:93:60
chr2	71163245	.	A	.	.	PASS	END=71163246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr2	71163247	.	C	.	.	PASS	END=71163248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:72:60
chr2	71163249	.	G	.	.	PASS	END=71163252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr2	71163253	.	T	.	96.19	PASS	DP=43;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:32:43:66.20:60:66
chr2	71170619	.	A	.	.	PASS	END=71170621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr2	71170622	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:33:60
chr2	71170623	.	C	.	.	PASS	END=71170645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr2	71170646	.	C	.	.	PASS	END=71170650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr2	71170651	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:72:60
chr2	71170652	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:48:60
chr2	71170653	.	C	.	.	PASS	END=71170663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr2	71170664	.	C	.	.	PASS	END=71170667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr2	71170668	.	A	.	.	PASS	END=71170669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:30:60
chr2	71170670	.	G	.	.	PASS	END=71170684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr2	71170685	.	G	.	.	PASS	END=71170692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:75:60
chr2	71170693	.	G	.	.	PASS	END=71170700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	71170701	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:76:60
chr2	71170702	.	A	.	.	PASS	END=71170743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	71170744	.	G	.	.	PASS	END=71170872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:82:60
chr2	71170873	.	T	.	.	PASS	END=71170894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	71171286	.	G	.	.	LowGQX	END=71171385	GT	./.
chr2	71185125	.	G	.	.	PASS	END=71185146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	71185147	.	G	.	.	PASS	END=71185178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	71185179	.	G	.	.	PASS	END=71185198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	71185199	.	C	.	.	PASS	END=71185318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	71185319	.	A	.	.	PASS	END=71185325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	71185412	.	C	.	.	PASS	END=71185477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	71185478	.	T	.	.	PASS	END=71185525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	71185526	.	C	.	.	PASS	END=71185548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	71185549	.	C	.	.	PASS	END=71185565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	71185566	.	A	.	.	PASS	END=71185570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr2	71185571	.	G	.	.	PASS	END=71185575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:87:59
chr2	71185576	.	A	.	111.25	PASS	DP=56;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:31:56:81.26:59:81
chr2	71185577	.	G	.	.	PASS	END=71185580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:59
chr2	71185581	.	T	G	339.52	SB	BaseQRankSum=-1.513;DP=55;Dels=0.00;FS=85.416;HRun=5;HaplotypeScore=23.7257;MQ=59;MQ0=0;MQRankSum=-0.414;QD=6.17;ReadPosRankSum=-0.651;SB=-2.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,25:55:99:370,0,638:59:99:0.455
chr2	71185582	.	G	.	.	PASS	END=71185607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:78:59
chr2	71186097	.	G	.	.	PASS	END=71186111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	71186112	.	C	.	.	PASS	END=71186129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	71186130	.	C	.	.	PASS	END=71186240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	71186241	.	T	.	.	PASS	END=71186271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	71186272	.	C	.	.	PASS	END=71186276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	71187018	.	C	.	.	PASS	END=71187050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	71187051	.	G	.	.	PASS	END=71187073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	71187074	.	C	.	.	PASS	END=71187128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr2	71187129	.	C	.	.	PASS	END=71187188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr2	71187189	.	C	.	.	PASS	END=71187214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr2	71187215	.	C	.	.	PASS	END=71187244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	71187245	.	G	.	.	PASS	END=71187259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	71188000	.	A	.	.	PASS	END=71188008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr2	71188009	.	C	.	.	PASS	END=71188033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	71188034	.	A	.	.	PASS	END=71188043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	71188044	.	G	.	.	PASS	END=71188085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	71188086	.	G	.	.	PASS	END=71188185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	71188186	.	G	.	.	PASS	END=71188213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	71188214	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:87:99:60
chr2	71188675	.	T	.	.	PASS	END=71188710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	71188711	.	C	.	.	PASS	END=71188722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	71188723	.	C	.	.	PASS	END=71188819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	71188820	.	C	.	.	PASS	END=71188858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	71188859	.	G	.	.	PASS	END=71188868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	71188869	.	C	.	.	PASS	END=71188875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	71189856	.	G	.	.	PASS	END=71189865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr2	71189866	.	C	.	.	PASS	END=71189882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	71189883	.	C	.	.	PASS	END=71189919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	71189920	.	A	.	.	PASS	END=71189951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	71189952	.	A	.	.	PASS	END=71190046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	71190047	.	G	.	.	PASS	END=71190081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	71190241	.	A	.	.	PASS	END=71190301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	71190302	.	C	.	.	PASS	END=71190350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	71190351	.	A	.	.	PASS	END=71190363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	71190364	.	A	.	.	PASS	END=71190383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	71190384	.	C	T	1155.05	PASS	DP=49;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7346;MQ=60;MQ0=0;QD=23.57;SB=-583.36	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,47:49:90.28:1188,90,0:60:90:1.000
chr2	71190385	.	G	.	.	PASS	END=71190392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr2	71190393	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:60:60
chr2	71190394	.	C	.	.	PASS	END=71190401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr2	71190402	.	A	.	.	PASS	END=71190404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr2	71190405	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:93:60
chr2	71190406	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:59:60
chr2	71190407	.	T	.	.	PASS	END=71190414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr2	71190415	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:60:60
chr2	71190416	.	T	.	.	PASS	END=71190417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:69:60
chr2	71190418	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:53:60
chr2	71190419	.	C	.	.	PASS	END=71190426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr2	71190427	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:51:60
chr2	71190428	.	C	.	.	PASS	END=71190433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr2	71190434	.	C	.	.	PASS	END=71190449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr2	71190450	.	C	.	.	PASS	END=71190455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	71190456	.	A	.	.	PASS	END=71190464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	71190465	.	C	.	.	PASS	END=71190472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	71190473	.	A	.	.	PASS	END=71190480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr2	71190481	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:60
chr2	71190482	.	G	.	.	PASS	END=71190490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr2	71190491	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:36:60
chr2	71190492	.	T	.	.	PASS	END=71190493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:54:60
chr2	71190651	.	G	.	.	PASS	END=71190654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	71190655	.	G	A	1247.13	PASS	BaseQRankSum=1.949;DP=98;Dels=0.00;FS=8.829;HRun=1;HaplotypeScore=20.8850;MQ=60;MQ0=0;MQRankSum=1.195;QD=12.73;ReadPosRankSum=0.714;SB=-710.57	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:42,56:98:99:1277,0,927:60:99:0.571
chr2	71190656	.	A	.	.	PASS	END=71190711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	71190712	.	C	.	.	PASS	END=71190761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	71190762	.	A	.	.	PASS	END=71190801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	71190802	.	C	.	.	PASS	END=71190820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	71190821	.	C	.	.	PASS	END=71190835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	71191517	.	G	.	.	PASS	END=71191519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr2	71191520	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:51:60
chr2	71191521	.	A	.	.	PASS	END=71191535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr2	71191536	.	C	.	.	PASS	END=71191542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr2	71191543	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:60:60
chr2	71191544	.	C	.	.	PASS	END=71191566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:96:60
chr2	71191567	.	G	.	.	PASS	END=71191658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	71191659	.	T	.	.	PASS	END=71191695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	71191696	.	C	.	.	PASS	END=71191723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:81:60
chr2	71191815	.	G	.	.	PASS	END=71191857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr2	71191858	.	T	.	.	PASS	END=71191880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	71191881	.	A	.	.	PASS	END=71191921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	71191922	.	G	.	.	PASS	END=71192018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	71192019	.	G	.	.	PASS	END=71192127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	71192128	.	G	.	.	PASS	END=71192227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	71192228	.	C	.	.	PASS	END=71192241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	71192242	.	T	.	.	PASS	END=71192269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	71192270	.	C	.	.	PASS	END=71192287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr2	71192288	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:54:60
chr2	71192289	.	C	.	.	PASS	END=71192299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr2	71192300	.	T	.	.	PASS	END=71192302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr2	71205774	.	C	.	.	LowGQX	END=71205947	GT	./.
chr2	71206225	.	A	.	.	LowGQX	END=71206475	GT	./.
chr2	71206789	.	A	.	.	LowGQX	END=71206992	GT	./.
chr2	71209064	.	A	.	.	LowGQX	END=71209232	GT	./.
chr2	71209705	.	A	.	.	LowGQX	END=71209820	GT	./.
chr2	71209821	.	G	.	.	LowGQX	END=71209829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71211251	.	A	.	.	LowGQX	END=71211317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71211318	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	71211319	.	C	.	.	LowGQX	END=71211416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71211417	.	C	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	71211418	.	T	.	.	LowGQX	.	GT	./.
chr2	71211419	.	C	.	.	LowGQX	END=71211420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71211739	.	A	.	.	LowGQX	END=71211814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71211815	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	71211816	.	G	.	.	LowGQX	END=71211859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71211860	.	C	.	.	LowGQX	END=71211922	GT	./.
chr2	71211923	.	A	.	.	LowGQX	END=71211960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71211961	.	A	.	.	LowGQX	.	GT	./.
chr2	71211962	.	C	.	.	LowGQX	END=71211988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71211989	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	71211990	.	A	.	.	LowGQX	END=71211992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71211993	.	T	.	.	LowGQX	END=71211994	GT	./.
chr2	71211995	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71211996	.	A	.	.	LowGQX	END=71211997	GT	./.
chr2	71211998	.	T	.	.	LowGQX	END=71212001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71212002	.	A	.	.	LowGQX	.	GT	./.
chr2	71212003	.	G	.	.	LowGQX	END=71212005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71212006	.	A	.	.	LowGQX	.	GT	./.
chr2	71212007	.	C	.	.	LowGQX	END=71212008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71212009	.	A	.	.	LowGQX	.	GT	./.
chr2	71212010	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71212011	.	C	.	.	LowGQX	.	GT	./.
chr2	71212012	.	C	.	.	LowGQX	END=71212013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71212014	.	G	.	.	LowGQX	.	GT	./.
chr2	71212015	.	C	.	.	LowGQX	END=71212016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71212017	.	A	.	.	LowGQX	.	GT	./.
chr2	71212018	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71212019	.	A	.	.	LowGQX	.	GT	./.
chr2	71212020	.	C	.	.	LowGQX	END=71212036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71212037	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	71212038	.	A	.	.	LowGQX	.	GT	./.
chr2	71212039	.	G	.	.	LowGQX	END=71212045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71212046	.	G	.	.	LowGQX	.	GT	./.
chr2	71212047	.	C	.	.	LowGQX	END=71212056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71212057	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	71212058	.	C	.	.	LowGQX	END=71212064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71212065	.	G	.	.	LowGQX	.	GT	./.
chr2	71212066	.	T	.	.	LowGQX	END=71212091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71212092	.	G	.	.	LowGQX	.	GT	./.
chr2	71212093	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71212094	.	C	.	.	LowGQX	.	GT	./.
chr2	71212095	.	T	.	.	LowGQX	END=71212125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71212126	.	G	.	.	LowGQX	.	GT	./.
chr2	71212127	.	G	.	.	LowGQX	END=71212128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71212129	.	A	.	.	LowGQX	.	GT	./.
chr2	71212130	.	C	.	.	LowGQX	END=71212136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71212137	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	71212138	.	C	.	.	LowGQX	END=71212167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71212168	.	T	.	.	LowGQX	END=71212436	GT	./.
chr2	71215728	.	G	.	.	LowGQX	END=71215847	GT	./.
chr2	71216043	.	A	.	.	LowGQX	END=71216149	GT	./.
chr2	71216863	.	G	.	.	LowGQX	END=71216962	GT	./.
chr2	71218937	.	T	.	.	LowGQX	END=71219115	GT	./.
chr2	71220816	.	T	.	.	LowGQX	END=71220895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71220896	.	A	.	.	LowGQX	END=71220915	GT	./.
chr2	71221743	.	C	.	.	LowGQX	END=71221902	GT	./.
chr2	71295654	.	C	.	.	LowGQX	END=71295656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71295657	.	C	.	.	LowGQX	.	GT	./.
chr2	71295658	.	C	.	.	LowGQX	END=71295660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71295661	.	C	.	.	LowGQX	.	GT	./.
chr2	71295662	.	G	.	.	LowGQX	END=71295666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71295667	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	71295668	.	C	.	.	LowGQX	END=71295669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71295670	.	C	.	.	LowGQX	.	GT	./.
chr2	71295671	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71295672	.	G	.	.	LowGQX	.	GT	./.
chr2	71295673	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71295674	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	71295675	.	C	.	.	LowGQX	END=71295677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71295678	.	G	.	.	LowGQX	.	GT	./.
chr2	71295679	.	C	.	.	LowGQX	END=71295680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71295681	.	C	.	.	LowGQX	.	GT	./.
chr2	71295682	.	A	.	.	LowGQX	END=71295683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71295684	.	G	.	.	LowGQX	END=71295685	GT	./.
chr2	71295686	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71295687	.	C	.	.	LowGQX	.	GT	./.
chr2	71295688	.	A	.	.	LowGQX	END=71295696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71295697	.	C	.	.	LowGQX	.	GT	./.
chr2	71295698	.	A	.	.	LowGQX	END=71295699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71295700	.	C	.	.	LowGQX	.	GT	./.
chr2	71295701	.	T	.	.	LowGQX	END=71295704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71295705	.	T	.	.	LowGQX	.	GT	./.
chr2	71295706	.	G	.	.	LowGQX	END=71295709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71295710	.	G	.	.	LowGQX	.	GT	./.
chr2	71295711	.	G	.	.	LowGQX	END=71295714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71295715	.	G	.	.	LowGQX	END=71295716	GT	./.
chr2	71295717	.	C	.	.	LowGQX	END=71295718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71295719	.	C	.	.	LowGQX	.	GT	./.
chr2	71295720	.	G	.	.	LowGQX	END=71295721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71295722	.	G	.	.	LowGQX	.	GT	./.
chr2	71295723	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71295724	.	A	.	.	LowGQX	.	GT	./.
chr2	71295725	.	G	.	.	LowGQX	END=71295727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71295728	.	G	.	.	LowGQX	.	GT	./.
chr2	71295729	.	G	.	.	LowGQX	END=71295731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71295732	.	G	.	.	LowGQX	.	GT	./.
chr2	71295733	.	G	.	.	LowGQX	END=71295734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71295735	.	G	.	.	LowGQX	END=71295738	GT	./.
chr2	71295739	.	A	.	.	LowGQX	END=71295742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71295743	.	A	.	.	LowGQX	.	GT	./.
chr2	71295744	.	G	.	.	LowGQX	END=71295750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71295751	.	G	.	.	LowGQX	.	GT	./.
chr2	71295752	.	G	.	.	LowGQX	END=71295753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71295754	.	A	.	.	LowGQX	.	GT	./.
chr2	71295755	.	G	.	.	LowGQX	END=71295761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71295762	.	T	.	.	LowGQX	END=71295763	GT	./.
chr2	71295764	.	A	.	.	LowGQX	END=71295767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71295768	.	G	.	.	LowGQX	END=71295864	GT	./.
chr2	71297625	.	T	.	.	LowGQX	END=71297724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71297869	.	A	.	.	LowGQX	END=71297971	GT	./.
chr2	71298814	.	A	.	.	LowGQX	END=71298959	GT	./.
chr2	71299769	.	A	.	.	LowGQX	END=71299883	GT	./.
chr2	71299912	.	C	.	.	LowGQX	END=71300011	GT	./.
chr2	71300610	.	A	.	.	LowGQX	END=71300649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71300650	.	G	T	4.97	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.49;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:25.53:33,0,26:60:5:0.500
chr2	71300651	.	A	.	.	LowGQX	END=71300705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71300706	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	71300707	.	A	.	.	LowGQX	END=71300725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71300726	.	T	.	.	LowGQX	.	GT	./.
chr2	71302679	.	T	.	.	LowGQX	END=71302778	GT	./.
chr2	71303732	.	A	.	.	LowGQX	END=71303833	GT	./.
chr2	71304678	.	C	.	.	LowGQX	END=71304735	GT	./.
chr2	71304736	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71304737	.	T	.	.	LowGQX	.	GT	./.
chr2	71304738	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71304739	.	T	.	.	LowGQX	.	GT	./.
chr2	71304740	.	G	.	.	LowGQX	END=71304742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71304743	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	71304744	.	G	.	.	LowGQX	END=71304745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71304746	.	G	.	.	LowGQX	.	GT	./.
chr2	71304747	.	C	.	.	LowGQX	END=71304750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71304751	.	G	.	.	LowGQX	.	GT	./.
chr2	71304752	.	A	.	.	LowGQX	END=71304756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71304757	.	C	.	.	LowGQX	.	GT	./.
chr2	71304758	.	T	.	.	LowGQX	END=71304762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71304763	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	71304764	.	A	.	.	LowGQX	END=71304767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71304768	.	T	.	.	LowGQX	.	GT	./.
chr2	71304769	.	G	.	.	LowGQX	END=71304772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71304773	.	C	.	.	LowGQX	.	GT	./.
chr2	71304774	.	T	.	.	LowGQX	END=71304777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71305436	.	T	.	.	LowGQX	END=71305640	GT	./.
chr2	71337049	.	T	.	.	PASS	END=71337105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr2	71337106	.	T	.	.	PASS	END=71337111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr2	71337112	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:72:60
chr2	71337113	.	A	.	.	PASS	END=71337129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	71337130	.	A	.	.	PASS	END=71337191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	71337192	.	C	.	.	PASS	END=71337236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	71337237	.	C	.	.	PASS	END=71337270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	71337271	.	A	.	.	PASS	END=71337288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	71337289	.	C	.	.	PASS	END=71337303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	71351285	.	A	.	.	PASS	END=71351347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr2	71351348	.	G	.	.	PASS	END=71351398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	71351399	.	G	.	.	PASS	END=71351402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	71351403	.	C	A	1149.51	PASS	BaseQRankSum=2.592;DP=76;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9997;MQ=60;MQ0=0;MQRankSum=-0.639;QD=15.13;ReadPosRankSum=0.140;SB=-99.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,38:76:99:1180,0,1140:60:99:0.500
chr2	71351404	.	G	.	.	PASS	END=71351410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	71351411	.	T	.	.	PASS	END=71351422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	71351423	.	T	.	.	PASS	END=71351457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	71351458	.	C	.	.	PASS	END=71351486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	71351487	.	G	A	2130.55	PASS	BaseQRankSum=3.089;DP=204;Dels=0.00;FS=5.193;HRun=0;HaplotypeScore=12.3099;MQ=60;MQ0=0;MQRankSum=-0.854;QD=10.44;ReadPosRankSum=0.578;SB=-1022.20	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:112,90:204:99:2161,0,2570:60:99:0.446
chr2	71351488	.	C	.	.	PASS	END=71351561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr2	71351562	.	A	.	.	PASS	END=71351579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	71351580	.	A	.	.	PASS	END=71351590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	71351591	.	A	.	.	PASS	END=71351607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	71351608	.	C	.	.	PASS	END=71351620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	71351621	.	T	.	.	PASS	END=71351640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr2	71351641	.	T	.	.	PASS	END=71351648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	71351649	.	G	.	.	PASS	END=71351663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	71351664	.	G	.	.	PASS	END=71351671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	71351672	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:15:60
chr2	71351673	.	C	.	.	PASS	END=71351674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	71351675	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:21:60
chr2	71351676	.	G	.	.	PASS	END=71351697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	71351698	.	A	.	.	PASS	END=71351700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	71351701	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:25:60
chr2	71351702	.	T	.	.	PASS	END=71351706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr2	71351707	.	T	.	.	PASS	END=71351720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr2	71351721	.	A	.	.	PASS	END=71351724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	71357259	.	G	.	.	PASS	END=71357269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr2	71357270	.	C	.	.	PASS	END=71357382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:77:60
chr2	71357383	.	A	.	.	PASS	END=71357389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:59
chr2	71357390	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:75:60
chr2	71357391	.	T	.	.	PASS	END=71357400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	71357791	.	C	.	.	LowGQX	END=71357822	GT	./.
chr2	71357823	.	A	.	.	LowGQX	END=71357845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71357846	.	A	.	.	LowGQX	.	GT	./.
chr2	71357847	.	G	.	.	LowGQX	END=71357849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71357850	.	G	.	.	LowGQX	.	GT	./.
chr2	71357851	.	G	.	.	LowGQX	END=71357867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71357868	.	C	.	.	LowGQX	.	GT	./.
chr2	71357869	.	C	.	.	LowGQX	END=71357885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71357886	.	T	.	.	LowGQX	.	GT	./.
chr2	71357887	.	A	.	.	LowGQX	END=71357890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71360026	.	A	.	.	LowGQX	END=71360028	GT	./.
chr2	71360029	.	A	.	.	LowGQX	END=71360265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71360266	.	A	.	.	LowGQX	END=71360708	GT	./.
chr2	71361076	.	A	.	.	LowGQX	END=71361129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71361130	.	A	.	.	LowGQX	END=71361237	GT	./.
chr2	71361734	.	T	.	.	LowGQX	END=71361821	GT	./.
chr2	71361822	.	G	.	.	LowGQX	END=71361929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71365618	.	A	.	.	LowGQX	END=71365719	GT	./.
chr2	71365720	.	T	.	.	LowGQX	END=71365774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71365775	.	T	.	.	LowGQX	.	GT	./.
chr2	71365776	.	T	.	.	LowGQX	END=71365846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71365847	.	C	.	.	LowGQX	.	GT	./.
chr2	71365848	.	C	.	.	LowGQX	END=71365859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71365860	.	A	.	.	LowGQX	.	GT	./.
chr2	71365861	.	T	.	.	LowGQX	END=71365864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71365865	.	A	.	.	LowGQX	.	GT	./.
chr2	71365866	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71365867	.	A	.	.	LowGQX	.	GT	./.
chr2	71365868	.	A	.	.	LowGQX	END=71365869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71365870	.	C	.	.	LowGQX	END=71365910	GT	./.
chr2	71366909	.	G	.	.	LowGQX	END=71366942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71366943	.	A	.	.	LowGQX	.	GT	./.
chr2	71366944	.	A	.	.	LowGQX	END=71367008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71368360	.	A	.	.	LowGQX	END=71368501	GT	./.
chr2	71371556	.	A	.	.	LowGQX	END=71371603	GT	./.
chr2	71371604	.	A	.	.	LowGQX	END=71371670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71375127	.	A	.	.	LowGQX	END=71375238	GT	./.
chr2	71376351	.	A	.	.	LowGQX	END=71376585	GT	./.
chr2	71376994	.	A	.	.	LowGQX	END=71377147	GT	./.
chr2	71415587	.	T	.	.	LowGQX	END=71415686	GT	./.
chr2	71416974	.	C	.	.	LowGQX	END=71417151	GT	./.
chr2	71429581	.	C	.	.	LowGQX	END=71429624	GT	./.
chr2	71429625	.	G	.	.	LowGQX	END=71429668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71429669	.	C	.	.	LowGQX	.	GT	./.
chr2	71429670	.	T	.	.	LowGQX	END=71429688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71429689	.	G	.	.	LowGQX	.	GT	./.
chr2	71429690	.	T	.	.	LowGQX	END=71429691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71429692	.	A	.	.	LowGQX	.	GT	./.
chr2	71429693	.	T	.	.	LowGQX	END=71429700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71429701	.	C	.	.	LowGQX	.	GT	./.
chr2	71429702	.	C	.	.	LowGQX	END=71429708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71429709	.	G	.	.	LowGQX	.	GT	./.
chr2	71429710	.	A	.	.	LowGQX	END=71429719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71503717	.	G	.	.	LowGQX	END=71503884	GT	./.
chr2	71575882	.	G	.	.	LowGQX	END=71576163	GT	./.
chr2	71576164	.	C	.	.	LowGQX	END=71576166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71576167	.	C	.	.	LowGQX	.	GT	./.
chr2	71576168	.	A	.	.	LowGQX	END=71576205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71576206	.	G	.	.	LowGQX	.	GT	./.
chr2	71576207	.	A	.	.	LowGQX	END=71576209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71576210	.	T	.	.	LowGQX	.	GT	./.
chr2	71576211	.	T	.	.	LowGQX	END=71576229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71576230	.	G	.	.	LowGQX	.	GT	./.
chr2	71576231	.	T	.	.	LowGQX	END=71576254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71576255	.	C	.	.	LowGQX	END=71576256	GT	./.
chr2	71576257	.	A	.	.	LowGQX	END=71576277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71576278	.	G	.	.	LowGQX	.	GT	./.
chr2	71576279	.	G	.	.	LowGQX	END=71576317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71576318	.	T	.	.	LowGQX	END=71577403	GT	./.
chr2	71582777	.	T	.	.	LowGQX	END=71582929	GT	./.
chr2	71590201	.	T	.	.	LowGQX	END=71590309	GT	./.
chr2	71590310	.	C	.	.	LowGQX	END=71590344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71590345	.	T	.	.	LowGQX	.	GT	./.
chr2	71590346	.	A	.	.	LowGQX	END=71590349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71590350	.	A	.	.	LowGQX	.	GT	./.
chr2	71590351	.	A	.	.	LowGQX	END=71590352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71591082	.	A	.	.	LowGQX	END=71591384	GT	./.
chr2	71592557	.	A	.	.	LowGQX	END=71592838	GT	./.
chr2	71595510	.	A	.	.	LowGQX	END=71595689	GT	./.
chr2	71597011	.	A	.	.	LowGQX	END=71597180	GT	./.
chr2	71607332	.	A	.	.	LowGQX	END=71607431	GT	./.
chr2	71607620	.	A	.	.	LowGQX	END=71607719	GT	./.
chr2	71615527	.	G	.	.	LowGQX	END=71615626	GT	./.
chr2	71615752	.	G	.	.	LowGQX	END=71615853	GT	./.
chr2	71620523	.	G	.	.	LowGQX	END=71620562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71620563	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	71620564	.	T	.	.	LowGQX	END=71620576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71620577	.	A	.	.	LowGQX	.	GT	./.
chr2	71620578	.	C	.	.	LowGQX	END=71620631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71620632	.	A	.	.	LowGQX	.	GT	./.
chr2	71620633	.	C	.	.	LowGQX	END=71620634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71620635	.	A	.	.	LowGQX	.	GT	./.
chr2	71620636	.	C	.	.	LowGQX	END=71620775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71622340	.	A	.	.	LowGQX	END=71622425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71622426	.	T	.	.	LowGQX	.	GT	./.
chr2	71622427	.	G	.	.	LowGQX	END=71622435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71622436	.	A	.	.	LowGQX	END=71622439	GT	./.
chr2	71623189	.	A	.	.	LowGQX	END=71623346	GT	./.
chr2	71625759	.	T	.	.	LowGQX	END=71625916	GT	./.
chr2	71626683	.	T	.	.	LowGQX	END=71626716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71626717	.	A	.	.	LowGQX	.	GT	./.
chr2	71626718	.	G	.	.	LowGQX	END=71626720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71626721	.	A	.	.	LowGQX	.	GT	./.
chr2	71626722	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71626723	.	A	.	.	LowGQX	.	GT	./.
chr2	71626724	.	A	.	.	LowGQX	END=71626729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71626730	.	G	.	.	LowGQX	.	GT	./.
chr2	71626731	.	G	.	.	LowGQX	END=71626752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71626753	.	T	.	.	LowGQX	.	GT	./.
chr2	71626754	.	A	.	.	LowGQX	END=71626782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71627227	.	G	.	.	LowGQX	END=71627326	GT	./.
chr2	71627579	.	C	.	.	LowGQX	END=71627678	GT	./.
chr2	71629084	.	A	.	.	LowGQX	END=71629273	GT	./.
chr2	71630998	.	A	.	.	LowGQX	END=71631130	GT	./.
chr2	71632649	.	T	.	.	LowGQX	END=71632704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71632705	.	A	.	.	LowGQX	.	GT	./.
chr2	71632706	.	A	.	.	LowGQX	END=71632710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71632711	.	T	.	.	LowGQX	.	GT	./.
chr2	71632712	.	A	.	.	LowGQX	END=71632742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71632743	.	A	.	.	LowGQX	END=71632801	GT	./.
chr2	71633256	.	A	.	.	LowGQX	END=71633332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71633333	.	T	.	.	LowGQX	END=71633394	GT	./.
chr2	71635250	.	A	.	.	LowGQX	END=71635379	GT	./.
chr2	71635819	.	T	.	.	LowGQX	END=71635918	GT	./.
chr2	71645701	.	A	.	.	LowGQX	END=71645800	GT	./.
chr2	71649942	.	A	.	.	LowGQX	END=71651149	GT	./.
chr2	71651150	.	G	.	.	LowGQX	END=71651170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	71651763	.	C	.	.	LowGQX	END=71651862	GT	./.
chr2	71653588	.	A	.	.	LowGQX	END=71654546	GT	./.
chr2	71655675	.	A	.	.	LowGQX	END=71655783	GT	./.
chr2	71658455	.	A	.	.	LowGQX	END=71658612	GT	./.
chr2	71658613	.	G	.	.	LowGQX	END=71658614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	71660293	.	A	.	.	LowGQX	END=71660415	GT	./.
chr2	71661795	.	A	.	.	LowGQX	END=71661954	GT	./.
chr2	71681078	.	T	.	.	PASS	END=71681106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:78:60
chr2	71681107	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:56:60
chr2	71681108	.	G	.	.	PASS	END=71681110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	71681111	.	G	.	.	PASS	END=71681137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	71681138	.	G	.	.	PASS	END=71681239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	71681240	.	C	.	.	PASS	END=71681261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	71681262	.	G	.	.	PASS	END=71681267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	71693972	.	C	.	.	PASS	END=71694006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	71694007	.	T	.	.	PASS	END=71694077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	71707962	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:81:60
chr2	71707963	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:48:60
chr2	71707964	.	G	.	.	PASS	END=71707985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:60
chr2	71707986	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:45:60
chr2	71707987	.	C	.	.	PASS	END=71708025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr2	71708026	.	A	.	.	PASS	END=71708050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	71708051	.	A	.	.	PASS	END=71708119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	71708958	.	T	.	.	PASS	END=71709056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	71709057	.	C	.	.	PASS	END=71709074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	71709075	.	G	.	.	PASS	END=71709092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr2	71709093	.	A	.	.	PASS	END=71709097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr2	71709098	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:45:60
chr2	71709099	.	A	.	.	PASS	END=71709106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr2	71709107	.	T	.	.	PASS	END=71709120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr2	71709121	.	T	.	.	PASS	END=71709135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	71709136	.	A	.	.	PASS	END=71709146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	71709147	.	G	.	.	PASS	END=71709151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr2	71730293	.	G	.	.	PASS	END=71730380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	71730381	.	C	.	.	PASS	END=71730396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	71730397	.	T	.	.	PASS	END=71730450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr2	71730451	.	T	.	.	PASS	END=71730458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr2	71730459	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:41:12:60
chr2	71730460	.	A	.	.	PASS	END=71730478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	71730479	.	A	.	.	PASS	END=71730481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr2	71730482	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:63:60
chr2	71730483	.	C	.	.	PASS	END=71730490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr2	71730491	.	T	.	.	PASS	END=71730498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	71730499	.	T	.	.	PASS	END=71730500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr2	71738886	.	G	.	.	PASS	END=71738890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	71738891	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:54:60
chr2	71738892	.	C	.	.	PASS	END=71738906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:91:60
chr2	71738907	.	A	.	.	PASS	END=71738930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	71738931	.	T	.	.	PASS	END=71738956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	71738957	.	G	.	.	PASS	END=71739006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	71739007	.	C	.	.	PASS	END=71739102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr2	71740296	.	G	.	.	PASS	END=71740335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr2	71740336	.	C	.	.	PASS	END=71740409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr2	71740410	.	T	.	.	PASS	END=71740442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	71740443	.	G	.	.	PASS	END=71740462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	71740795	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:75:60
chr2	71740796	.	A	.	.	PASS	END=71740803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	71740804	.	G	.	.	PASS	END=71740823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	71740824	.	C	.	.	PASS	END=71740858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	71740859	.	G	.	.	PASS	END=71740876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	71740877	.	G	.	.	PASS	END=71741019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	71741020	.	A	.	.	PASS	END=71741070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	71741071	.	T	.	.	PASS	END=71741094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	71741095	.	T	.	.	PASS	END=71741102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	71742702	.	G	.	.	PASS	END=71742708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr2	71742709	.	A	.	.	PASS	END=71742710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:74:60
chr2	71742711	.	T	.	.	PASS	END=71742716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr2	71742717	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:60:60
chr2	71742718	.	C	.	.	PASS	END=71742728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr2	71742729	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:60:60
chr2	71742730	.	T	.	.	PASS	END=71742731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr2	71742732	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:58:60
chr2	71742733	.	T	.	.	PASS	END=71742790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	71742791	.	G	.	.	PASS	END=71742863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:96:60
chr2	71742864	.	A	.	.	PASS	END=71742906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:78:60
chr2	71742907	.	A	.	.	PASS	END=71742911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr2	71742912	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr2	71742913	.	T	.	.	PASS	END=71742932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr2	71743259	.	C	.	.	PASS	END=71743279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	71743280	.	G	.	.	PASS	END=71743371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	71743372	.	G	.	.	PASS	END=71743405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	71743406	.	C	.	.	PASS	END=71743418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	71743419	.	C	.	.	PASS	END=71743423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	71744068	.	G	.	.	PASS	END=71744080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr2	71744081	.	T	.	.	PASS	END=71744125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	71744126	.	A	.	.	PASS	END=71744220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	71747243	.	C	.	.	PASS	END=71747275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	71747276	.	G	.	.	PASS	END=71747320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	71747321	.	C	.	.	PASS	END=71747389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	71747868	.	A	.	.	PASS	END=71747870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr2	71747871	.	C	.	.	PASS	END=71747900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	71747901	.	G	.	.	PASS	END=71747920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	71747921	.	C	.	.	PASS	END=71747949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	71747950	.	C	.	.	PASS	END=71748017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	71748018	.	C	.	.	PASS	END=71748062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	71748063	.	C	.	.	PASS	END=71748072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	71748073	.	C	.	.	PASS	END=71748079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr2	71748080	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:39:60
chr2	71748081	.	T	.	.	PASS	END=71748085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	71753299	.	A	.	.	PASS	END=71753326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	71753327	.	A	.	.	PASS	END=71753422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	71753423	.	T	.	.	PASS	END=71753439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	71753440	.	T	.	.	PASS	END=71753459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:85:60
chr2	71753460	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:75:60
chr2	71753461	.	G	.	.	PASS	END=71753477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	71753478	.	T	.	.	PASS	END=71753481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	71753482	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:60:60
chr2	71753483	.	G	.	.	PASS	END=71753490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	71753491	.	C	.	.	PASS	END=71753492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	71753493	.	C	.	.	PASS	END=71753494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr2	71753495	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:24:60
chr2	71753496	.	G	.	.	PASS	END=71753502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr2	71753503	.	A	.	.	PASS	END=71753505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	71753506	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:15:60
chr2	71753507	.	C	.	.	LowGQX	END=71753516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	71753517	.	C	.	.	LowGQX	END=71753518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr2	71753519	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:60
chr2	71753520	.	G	.	.	LowGQX	END=71753521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	71753522	.	G	.	.	LowGQX	END=71753523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	71753524	.	C	.	.	LowGQX	END=71753527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	71755377	.	T	.	.	PASS	END=71755379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	71755380	.	A	G	1111.56	PASS	BaseQRankSum=1.534;DP=93;Dels=0.00;FS=6.423;HRun=1;HaplotypeScore=9.5196;MQ=60;MQ0=0;MQRankSum=0.196;QD=11.95;ReadPosRankSum=-1.695;SB=-271.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:48,45:93:99:1142,0,1190:60:99:0.484
chr2	71755381	.	G	.	.	PASS	END=71755411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	71755412	.	G	.	.	PASS	END=71755441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	71755442	.	A	.	.	PASS	END=71755545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	71755546	.	A	.	.	PASS	END=71755572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	71755573	.	T	.	.	PASS	END=71755582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	71762100	.	C	.	.	PASS	END=71762135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	71762136	.	C	.	.	PASS	END=71762207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	71762208	.	C	.	.	PASS	END=71762251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	71762252	.	G	.	.	PASS	END=71762270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	71762347	.	T	.	.	PASS	END=71762415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	71762416	.	A	.	.	PASS	END=71762475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	71762476	.	T	.	.	PASS	END=71762485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	71762486	.	G	.	.	PASS	END=71762492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	71766236	.	G	.	.	PASS	END=71766249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr2	71766250	.	T	.	.	PASS	END=71766257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	71766258	.	T	.	.	PASS	END=71766260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr2	71766261	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:66:60
chr2	71766262	.	G	.	.	PASS	END=71766269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	71766270	.	C	.	.	PASS	END=71766289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	71766290	.	C	.	.	PASS	END=71766393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	71766394	.	T	.	.	PASS	END=71766397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	71766398	.	A	.	.	PASS	END=71766408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	71766409	.	T	.	.	PASS	END=71766420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:87:60
chr2	71776429	.	T	.	.	PASS	END=71776465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:93:60
chr2	71776466	.	T	.	.	PASS	END=71776552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	71776553	.	G	.	.	PASS	END=71776572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:96:60
chr2	71778120	.	T	.	.	PASS	END=71778142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr2	71778143	.	C	.	.	PASS	END=71778260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr2	71778261	.	C	.	.	PASS	END=71778267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr2	71778268	.	A	.	.	PASS	END=71778280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	71778281	.	G	.	.	PASS	END=71778337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	71778686	.	C	.	.	PASS	END=71778700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr2	71778701	.	T	.	.	PASS	END=71778702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:60:60
chr2	71778703	.	T	.	.	PASS	END=71778717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	71778718	.	G	.	.	PASS	END=71778837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:82:60
chr2	71778838	.	C	.	.	PASS	END=71778845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:93:60
chr2	71778846	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:69:60
chr2	71778847	.	G	.	.	PASS	END=71778858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:81:60
chr2	71778859	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:57:60
chr2	71778860	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:99:60
chr2	71778861	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:36:60
chr2	71778862	.	G	.	.	PASS	END=71778863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr2	71778864	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:69:60
chr2	71778865	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:51:60
chr2	71778866	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:69:60
chr2	71778867	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:39:60
chr2	71778868	.	G	.	.	PASS	END=71778870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr2	71778871	.	T	.	66.10	PASS	DP=36;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:24:36:36.10:60:36
chr2	71778872	.	G	.	.	PASS	END=71778873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr2	71778874	.	G	.	.	PASS	END=71778877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:51:60
chr2	71778878	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:2:60
chr2	71778879	.	G	.	.	PASS	END=71778883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr2	71778884	.	T	.	28.54	LowGQX	DP=28;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:18:28:2.34:60:2
chr2	71778885	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:12:60
chr2	71778886	.	G	.	.	PASS	END=71778888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr2	71778889	.	G	.	.	PASS	END=71778890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr2	71778891	.	A	.	.	PASS	END=71778894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:39:60
chr2	71778895	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:54:60
chr2	71778896	.	A	.	.	PASS	END=71778901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:36:60
chr2	71780090	.	G	.	.	PASS	END=71780093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr2	71780094	.	C	.	.	PASS	END=71780099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr2	71780100	.	T	.	.	PASS	END=71780106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	71780107	.	T	.	.	PASS	END=71780115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	71780116	.	C	.	.	PASS	END=71780120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr2	71780121	.	G	.	.	PASS	END=71780132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	71780133	.	G	.	.	PASS	END=71780144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:93:60
chr2	71780145	.	A	.	.	PASS	END=71780168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	71780169	.	T	.	.	PASS	END=71780208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	71780209	.	G	.	.	PASS	END=71780214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	71780215	.	T	C	1487.39	PASS	BaseQRankSum=-2.703;DP=141;Dels=0.00;FS=0.644;HRun=0;HaplotypeScore=5.7865;MQ=60;MQ0=0;MQRankSum=0.579;QD=10.55;ReadPosRankSum=1.291;SB=-899.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:71,68:141:99:1517,0,1568:60:99:0.489
chr2	71780216	.	G	.	.	PASS	END=71780283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	71780284	.	C	.	.	PASS	END=71780299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	71780300	.	A	.	.	PASS	END=71780309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	71780310	.	T	.	.	PASS	END=71780324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	71780325	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:75:60
chr2	71780326	.	A	.	.	PASS	END=71780343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr2	71780344	.	C	.	.	PASS	END=71780355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr2	71780356	.	A	.	.	PASS	END=71780365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr2	71780366	.	A	.	.	PASS	END=71780369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	71780886	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:0:60
chr2	71780887	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	71780888	.	C	.	.	PASS	END=71780894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	71780895	.	T	.	.	PASS	END=71780898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	71780899	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:21:60
chr2	71780900	.	T	.	.	PASS	END=71780910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	71780911	.	C	.	.	PASS	END=71780912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:81:60
chr2	71780913	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:54:60
chr2	71780914	.	T	.	.	PASS	END=71780933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr2	71780934	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:40:60
chr2	71780935	.	A	.	.	PASS	END=71780943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr2	71780944	.	C	.	.	PASS	END=71780954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	71780955	.	T	.	.	PASS	END=71780984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	71780985	.	T	.	.	PASS	END=71781012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	71781013	.	C	.	.	PASS	END=71781080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	71781081	.	A	.	.	PASS	END=71781099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	71781100	.	A	.	.	PASS	END=71781112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	71783044	.	C	.	.	PASS	END=71783056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	71783057	.	G	.	.	PASS	END=71783207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	71783208	.	G	.	.	PASS	END=71783243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	71783244	.	C	.	.	PASS	END=71783252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	71788831	.	T	.	.	PASS	END=71788840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr2	71788841	.	C	.	.	PASS	END=71788852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr2	71788853	.	G	.	.	PASS	END=71788865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr2	71788866	.	T	.	.	PASS	END=71788895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr2	71788896	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:71:60
chr2	71788897	.	C	.	.	PASS	END=71788927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:87:60
chr2	71788928	.	G	.	.	PASS	END=71789015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	71789016	.	C	.	.	PASS	END=71789023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:90:60
chr2	71789024	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:73:60
chr2	71789025	.	T	.	.	PASS	END=71789041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr2	71789042	.	T	.	.	PASS	END=71789070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr2	71789071	.	G	.	.	PASS	END=71789082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr2	71789083	.	G	.	.	PASS	END=71789091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	71789092	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:36:60
chr2	71789093	.	G	.	.	PASS	END=71789107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr2	71789108	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:15:60
chr2	71789109	.	T	.	.	PASS	END=71789114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr2	71789115	.	G	.	.	PASS	END=71789116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr2	71789117	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:39:60
chr2	71789118	.	G	.	.	PASS	END=71789120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr2	71789121	.	T	.	.	PASS	END=71789125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr2	71791137	.	C	.	.	PASS	END=71791151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr2	71791152	.	T	.	.	PASS	END=71791153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr2	71791154	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:27:60
chr2	71791155	.	C	.	.	PASS	END=71791156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr2	71791157	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:24:60
chr2	71791158	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:63:60
chr2	71791159	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:48:60
chr2	71791160	.	C	.	.	PASS	END=71791162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr2	71791163	.	A	.	22.37	LowGQX	DP=30;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:20:30:0.69:60:1
chr2	71791164	.	C	.	.	PASS	END=71791167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr2	71791168	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:45:60
chr2	71791169	.	A	.	31.38	LowGQX	DP=31;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:19:31:1.38:60:1
chr2	71791170	.	C	.	.	PASS	END=71791171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:69:60
chr2	71791172	.	A	.	19.37	LowGQX	DP=34;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:27:34:0.36:60:0
chr2	71791173	.	C	.	.	PASS	END=71791174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr2	71791175	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:30:60
chr2	71791176	.	C	.	.	PASS	END=71791177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:60
chr2	71791178	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:84:60
chr2	71791179	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:33:60
chr2	71791180	.	C	.	.	PASS	END=71791183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:57:60
chr2	71791184	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:75:60
chr2	71791185	.	C	.	.	PASS	END=71791187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:57:60
chr2	71791188	.	C	.	.	PASS	END=71791191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr2	71791192	.	A	.	.	PASS	END=71791193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:66:60
chr2	71791194	.	A	.	.	PASS	END=71791195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:54:60
chr2	71791196	.	C	.	.	PASS	END=71791199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:69:60
chr2	71791200	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:90:60
chr2	71791201	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:66:60
chr2	71791202	.	G	.	.	PASS	END=71791206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:72:60
chr2	71791207	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:57:60
chr2	71791208	.	C	.	.	PASS	END=71791219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:66:60
chr2	71791220	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:90:60
chr2	71791221	.	A	.	.	PASS	END=71791222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:66:60
chr2	71791223	.	G	.	.	PASS	END=71791226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:60
chr2	71791227	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:45:60
chr2	71791228	.	A	.	.	PASS	END=71791256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr2	71791257	.	G	.	.	PASS	END=71791369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr2	71791370	.	G	.	.	PASS	END=71791393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr2	71791394	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:66:60
chr2	71795030	.	C	.	.	PASS	END=71795036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr2	71795037	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:39:60
chr2	71795038	.	T	.	.	PASS	END=71795048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr2	71795049	.	A	.	.	PASS	END=71795051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr2	71795052	.	G	.	.	PASS	END=71795108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr2	71795109	.	G	.	.	PASS	END=71795138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:77:60
chr2	71795139	.	G	.	.	PASS	END=71795151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	71795152	.	A	T	960.89	PASS	BaseQRankSum=2.245;DP=69;Dels=0.00;FS=2.234;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-0.151;QD=13.93;ReadPosRankSum=0.272;SB=-444.71	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,39:69:99:991,0,844:60:99:0.565
chr2	71795153	.	G	.	.	PASS	END=71795265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	71795266	.	C	.	.	PASS	END=71795328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	71795329	.	G	.	.	PASS	END=71795408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	71795409	.	C	.	.	PASS	END=71795448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	71795449	.	T	.	.	PASS	END=71795456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	71795457	.	T	.	111.23	PASS	DP=63;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:50:63:81.24:60:81
chr2	71795458	.	C	.	.	PASS	END=71795481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:81:60
chr2	71795482	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:59:60
chr2	71795483	.	G	.	.	PASS	END=71795490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:84:60
chr2	71795491	.	T	.	16.39	LowGQX	DP=53;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:42:53:0.18:60:0
chr2	71795492	.	G	.	.	PASS	END=71795519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	71796899	.	G	.	.	PASS	END=71796906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	71796907	.	C	.	.	PASS	END=71796925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	71796926	.	A	.	.	PASS	END=71796940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:97:60
chr2	71796941	.	C	.	.	PASS	END=71796982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	71796983	.	C	.	.	PASS	END=71797057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	71797058	.	C	.	.	PASS	END=71797089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	71797090	.	G	.	.	PASS	END=71797101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	71797102	.	T	.	.	PASS	END=71797115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	71797308	.	T	.	.	PASS	END=71797427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	71797428	.	T	.	.	PASS	END=71797456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	71797457	.	T	.	.	PASS	END=71797480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	71797481	.	A	.	.	PASS	END=71797498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr2	71797499	.	C	.	.	PASS	END=71797500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:72:60
chr2	71797501	.	G	.	.	PASS	END=71797515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr2	71797678	.	A	.	.	PASS	END=71797703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	71797704	.	G	.	.	PASS	END=71797751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	71797752	.	C	.	.	PASS	END=71797804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	71797805	.	A	.	.	PASS	END=71797844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	71797845	.	C	.	.	PASS	END=71797872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	71797873	.	T	.	.	PASS	END=71797894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr2	71797895	.	G	.	.	PASS	END=71797906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	71797907	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:69:60
chr2	71797908	.	G	.	.	PASS	END=71797909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr2	71797910	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:60:60
chr2	71797911	.	C	.	.	PASS	END=71797922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr2	71801277	.	C	.	.	PASS	END=71801284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr2	71801285	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:71:60
chr2	71801286	.	G	.	.	PASS	END=71801313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:81:60
chr2	71801314	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:66:60
chr2	71801315	.	T	.	.	PASS	END=71801333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	71801334	.	C	.	.	PASS	END=71801371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	71801372	.	T	.	.	PASS	END=71801461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	71801462	.	G	.	.	PASS	END=71801469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:85:60
chr2	71801470	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:75:60
chr2	71801471	.	T	.	.	PASS	END=71801485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	71801486	.	C	.	.	PASS	END=71801497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr2	71801498	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:46:60
chr2	71801499	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:60:60
chr2	71801500	.	T	.	.	PASS	END=71801512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:84:60
chr2	71801513	.	T	.	.	PASS	END=71801521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr2	71801522	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:30:60
chr2	71801523	.	C	.	.	PASS	END=71801535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr2	71801536	.	G	.	.	PASS	END=71801544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr2	71801545	.	T	.	.	PASS	END=71801552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	71816672	.	C	.	.	PASS	END=71816686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	71816687	.	G	.	.	PASS	END=71816716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	71816717	.	C	.	.	PASS	END=71816762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	71816763	.	T	.	.	PASS	END=71816845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	71816846	.	T	.	.	PASS	END=71816862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	71816863	.	C	.	.	PASS	END=71816867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	71817290	.	T	.	.	PASS	END=71817363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	71817364	.	T	.	.	PASS	END=71817385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	71817386	.	A	.	.	PASS	END=71817430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	71817431	.	G	.	.	PASS	END=71817436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr2	71817437	.	G	.	.	PASS	END=71817450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	71817451	.	T	.	.	PASS	END=71817457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr2	71817458	.	T	.	.	PASS	END=71817462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	71817463	.	T	.	.	PASS	END=71817469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	71825643	.	T	.	.	PASS	END=71825676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr2	71825677	.	C	T	725.13	PASS	BaseQRankSum=1.315;DP=59;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=17.1398;MQ=60;MQ0=0;MQRankSum=-1.284;QD=12.29;ReadPosRankSum=0.241;SB=-199.61	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,30:59:99:755,0,805:60:99:0.517
chr2	71825678	.	T	.	.	PASS	END=71825704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	71825705	.	A	.	.	PASS	END=71825747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	71825748	.	A	.	.	PASS	END=71825844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	71825845	.	T	.	.	PASS	END=71825863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	71825864	.	C	.	.	PASS	END=71825886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	71825887	.	C	.	.	PASS	END=71825897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	71825898	.	T	.	.	PASS	END=71825903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	71825904	.	C	.	.	PASS	END=71825919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr2	71825920	.	C	.	.	PASS	END=71825926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr2	71827781	.	T	.	.	PASS	END=71827804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	71827805	.	A	.	.	PASS	END=71827824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	71827825	.	G	.	.	PASS	END=71827849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	71827850	.	G	.	.	PASS	END=71827928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	71827929	.	C	.	.	PASS	END=71827961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	71827962	.	A	.	.	PASS	END=71827975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	71827976	.	A	.	.	PASS	END=71827990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr2	71827991	.	C	.	.	PASS	END=71827994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr2	71827995	.	T	.	.	PASS	END=71828004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	71828005	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:45:60
chr2	71828006	.	C	.	.	PASS	END=71828015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr2	71828016	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:57:60
chr2	71828017	.	G	.	.	PASS	END=71828020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr2	71828021	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:36:60
chr2	71828022	.	G	.	.	PASS	END=71828023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:78:60
chr2	71828548	.	A	.	.	PASS	END=71828561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	71828562	.	T	.	.	PASS	END=71828583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	71828584	.	T	.	.	PASS	END=71828624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	71828625	.	C	.	.	PASS	END=71828701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	71828702	.	T	.	.	PASS	END=71828709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	71829851	.	T	.	.	PASS	END=71829868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	71829869	.	T	.	.	PASS	END=71829886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	71829887	.	T	.	.	PASS	END=71829969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	71829970	.	G	.	.	PASS	END=71829986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	71838324	.	C	.	.	PASS	END=71838341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	71838342	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:67:69:60
chr2	71838343	.	T	.	.	PASS	END=71838363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	71838364	.	G	.	.	PASS	END=71838388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	71838389	.	C	.	.	PASS	END=71838410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	71838411	.	A	.	.	PASS	END=71838518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	71838519	.	C	.	.	PASS	END=71838527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr2	71838544	.	T	.	.	PASS	END=71838585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr2	71838586	.	T	.	.	PASS	END=71838596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:269:99:60
chr2	71838597	.	C	A	8371.14	PASS	BaseQRankSum=2.495;DP=293;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=18.9384;MQ=60;MQ0=0;MQRankSum=-0.497;QD=28.57;ReadPosRankSum=1.480;SB=-3755.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:5,287:293:99:8371,535,0:60:99:0.983
chr2	71838598	.	C	.	.	PASS	END=71838746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:282:99:60
chr2	71838747	.	C	.	.	PASS	END=71838774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr2	71838775	.	C	.	.	PASS	END=71838798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr2	71838799	.	C	.	.	PASS	END=71838807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	71839720	.	A	.	.	PASS	END=71839743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr2	71839744	.	C	.	.	PASS	END=71839745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:75:60
chr2	71839746	.	A	.	.	PASS	END=71839757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	71839758	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:73:60
chr2	71839759	.	T	.	.	PASS	END=71839787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	71839788	.	G	.	.	PASS	END=71839837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	71839838	.	G	.	.	PASS	END=71839869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	71839870	.	C	.	.	PASS	END=71839906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:84:60
chr2	71839907	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:63:73:60
chr2	71839908	.	G	.	.	PASS	END=71839928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:84:60
chr2	71839929	.	T	.	.	PASS	END=71839943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	71839944	.	A	.	.	PASS	END=71839955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr2	71839956	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:48:60
chr2	71839957	.	G	.	.	PASS	END=71839964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr2	71839965	.	C	.	.	PASS	END=71839970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr2	71839971	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:39:60
chr2	71839972	.	G	.	.	PASS	END=71839973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	71839974	.	G	.	.	PASS	END=71839983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr2	71839984	.	G	.	.	PASS	END=71839987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	71840413	.	G	.	.	PASS	END=71840415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:75:60
chr2	71840416	.	C	.	.	PASS	END=71840437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr2	71840438	.	G	.	.	PASS	END=71840471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	71840472	.	A	.	.	PASS	END=71840565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	71840566	.	C	.	.	PASS	END=71840591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	71847618	.	C	.	.	PASS	END=71847700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	71847701	.	G	.	.	PASS	END=71847730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	71847731	.	A	.	.	PASS	END=71847739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	71871044	.	T	.	.	PASS	END=71871081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	71871082	.	T	.	.	PASS	END=71871154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	71871155	.	T	.	.	PASS	END=71871194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	71871195	.	T	.	.	PASS	END=71871229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	71871230	.	G	.	.	PASS	END=71871234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	71871235	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:99:60
chr2	71871236	.	A	G	1630.55	PASS	DP=52;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=2.8799;MQ=60;MQ0=0;QD=31.36;SB=-251.52	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,52:52:99:1664,129,0:60:99:1.000
chr2	71871237	.	C	.	.	PASS	END=71871244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	71883241	.	T	.	.	PASS	END=71883263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	71883264	.	C	.	.	PASS	END=71883265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:72:60
chr2	71883266	.	C	.	.	PASS	END=71883267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	71883268	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:64:60
chr2	71883269	.	C	.	.	PASS	END=71883295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:94:60
chr2	71883296	.	A	.	.	PASS	END=71883312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	71883313	.	A	.	.	PASS	END=71883431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	71883432	.	A	.	.	PASS	END=71883451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:78:60
chr2	71883452	.	G	.	.	PASS	END=71883462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	71883463	.	T	.	.	PASS	END=71883471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr2	71885957	.	C	.	.	PASS	END=71886091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr2	71886092	.	C	.	.	PASS	END=71886130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr2	71886131	.	T	.	.	PASS	END=71886214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr2	71887639	.	A	.	.	PASS	END=71887689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	71887690	.	T	.	.	PASS	END=71887748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	71887749	.	C	.	.	PASS	END=71887768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	71887769	.	C	.	.	PASS	END=71887822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	71887823	.	C	.	.	PASS	END=71887832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:85:60
chr2	71891347	.	T	.	.	PASS	END=71891359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr2	71891360	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:68:60
chr2	71891361	.	C	T	1276.99	PASS	DP=46;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.6815;MQ=60;MQ0=0;QD=27.76;SB=-331.94	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,46:46:99:1310,99,0:60:99:1.000
chr2	71891362	.	G	.	.	PASS	END=71891403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr2	71891404	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:55:60
chr2	71891405	.	G	.	.	PASS	END=71891412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	71891413	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:72:60
chr2	71891414	.	T	.	.	PASS	END=71891427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	71891428	.	G	.	.	PASS	END=71891455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	71891456	.	G	.	.	PASS	END=71891559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:97:60
chr2	71891560	.	C	.	.	PASS	END=71891573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	71891574	.	T	.	.	PASS	END=71891590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr2	71891591	.	C	.	.	PASS	END=71891606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	71891607	.	C	.	.	PASS	END=71891611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr2	71891612	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:23:48:60
chr2	71891613	.	A	.	.	PASS	END=71891619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	71892241	.	C	.	.	PASS	END=71892267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	71892268	.	C	.	.	PASS	END=71892308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr2	71892309	.	G	.	.	PASS	END=71892388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr2	71892389	.	G	.	.	PASS	END=71892434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	71892435	.	G	.	.	PASS	END=71892481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	71892482	.	C	.	.	PASS	END=71892485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	71894455	.	A	.	.	PASS	END=71894505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	71894506	.	A	.	.	PASS	END=71894541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	71894542	.	T	.	.	PASS	END=71894690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr2	71894691	.	G	.	.	PASS	END=71894696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	71895833	.	A	.	.	PASS	END=71895857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	71895858	.	G	.	.	PASS	END=71895920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	71895921	.	C	.	.	PASS	END=71896007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	71896008	.	A	.	.	PASS	END=71896023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	71896191	.	C	.	.	PASS	END=71896246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	71896247	.	T	.	.	PASS	END=71896294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	71896295	.	T	.	.	PASS	END=71896330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	71896331	.	T	.	.	PASS	END=71896371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	71896372	.	C	.	.	PASS	END=71896388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	71896684	.	C	.	.	PASS	END=71896723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	71896724	.	T	.	.	PASS	END=71896771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	71896772	.	G	.	.	PASS	END=71896826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	71896827	.	T	.	.	PASS	END=71896864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	71896865	.	A	.	.	PASS	END=71896895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	71896896	.	C	.	.	PASS	END=71896915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	71896916	.	G	.	.	PASS	END=71896927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	71901276	.	T	.	.	PASS	END=71901285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	71901286	.	C	T	1934.51	PASS	DP=58;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=6.6284;MQ=60;MQ0=0;QD=33.35;SB=-308.15	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,58:58:99:1968,150,0:60:99:1.000
chr2	71901287	.	T	.	.	PASS	END=71901308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	71901309	.	G	.	.	PASS	END=71901332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	71901333	.	T	.	.	PASS	END=71901444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	71901445	.	A	.	.	PASS	END=71901477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	71906136	.	G	.	.	PASS	END=71906141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr2	71906142	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:39:60
chr2	71906143	.	A	.	.	PASS	END=71906164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr2	71906165	.	A	.	.	PASS	END=71906170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	71906171	.	T	C	1092.87	PASS	DP=35;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=31.22;SB=-261.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,35:35:87.28:1126,87,0:60:87:1.000
chr2	71906172	.	A	.	.	PASS	END=71906188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr2	71906189	.	T	.	.	PASS	END=71906199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr2	71906200	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:70:60
chr2	71906201	.	G	.	.	PASS	END=71906245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:78:60
chr2	71906246	.	T	.	.	PASS	END=71906325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	71906326	.	G	.	.	PASS	END=71906339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	71906340	.	A	.	.	PASS	END=71906370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr2	71906371	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:66:60
chr2	71906372	.	C	.	.	PASS	END=71906381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr2	71906382	.	C	.	.	PASS	END=71906396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	71906397	.	G	.	.	PASS	END=71906403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	71906404	.	G	.	.	PASS	END=71906407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr2	71906408	.	G	.	.	PASS	END=71906410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	71906411	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr2	71906412	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	71906413	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	71906414	.	T	.	.	PASS	END=71906416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	71908080	.	C	.	.	PASS	END=71908092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	71908093	.	C	.	.	PASS	END=71908129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	71908130	.	G	.	.	PASS	END=71908155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr2	71908156	.	T	.	.	PASS	END=71908242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr2	71908243	.	C	.	.	PASS	END=71908278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	71908279	.	T	.	.	PASS	END=71908291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	71909609	.	A	.	.	PASS	END=71909652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr2	71909653	.	C	.	.	PASS	END=71909800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr2	71909801	.	C	.	.	PASS	END=71909829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr2	71909830	.	T	.	.	PASS	END=71909858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	71913501	.	G	.	.	PASS	END=71913602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	71913603	.	T	.	.	PASS	END=71913644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	71913645	.	G	.	.	PASS	END=71913665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:96:60
chr2	71913666	.	C	.	.	PASS	END=71913673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	72359305	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:75:60
chr2	72359306	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:45:60
chr2	72359307	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:81:60
chr2	72359308	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:54:60
chr2	72359309	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:21:60
chr2	72359310	.	C	.	.	PASS	END=72359311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr2	72359312	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:41:60
chr2	72359313	.	C	.	.	PASS	END=72359314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:96:60
chr2	72359315	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:35:1:60
chr2	72359316	.	C	.	.	PASS	END=72359318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr2	72359319	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:69:60
chr2	72359320	.	G	.	.	PASS	END=72359325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr2	72359326	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:75:60
chr2	72359327	.	G	.	.	PASS	END=72359329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	72359330	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:66:60
chr2	72359331	.	T	.	.	PASS	END=72359352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr2	72359353	.	G	.	.	PASS	END=72359370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	72359371	.	C	.	.	PASS	END=72359426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	72359427	.	A	.	.	PASS	END=72359451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	72359452	.	G	.	.	PASS	END=72359499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr2	72359500	.	C	.	.	PASS	END=72359558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr2	72359559	.	G	.	.	PASS	END=72359575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:292:99:60
chr2	72359576	.	G	.	.	PASS	END=72359721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:334:99:60
chr2	72359722	.	A	.	.	PASS	END=72359774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr2	72359775	.	G	.	.	PASS	END=72359799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr2	72360101	.	C	.	.	PASS	END=72360138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	72360139	.	G	.	.	PASS	END=72360166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	72360167	.	C	.	.	PASS	END=72360245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	72360246	.	A	.	.	PASS	END=72360289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	72360290	.	G	.	.	PASS	END=72360316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	72360317	.	C	.	.	PASS	END=72360346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	72360347	.	A	.	.	PASS	END=72360409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr2	72360410	.	C	.	.	PASS	END=72360434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	72360435	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:72:60
chr2	72360436	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:45:60
chr2	72360437	.	C	.	.	PASS	END=72360443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr2	72360444	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:39:60
chr2	72360445	.	C	.	.	PASS	END=72360457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr2	72360458	.	T	.	.	PASS	END=72360462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr2	72360463	.	T	.	.	PASS	END=72360469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	72360470	.	T	.	.	PASS	END=72360474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr2	72360475	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:45:60
chr2	72360476	.	T	.	.	LowGQX	END=72360477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:21:60
chr2	72360478	.	C	.	.	PASS	END=72360487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr2	72361839	.	A	.	.	PASS	END=72361841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr2	72361842	.	G	.	.	PASS	END=72361844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	72361845	.	G	.	.	PASS	END=72361852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	72361853	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:45:60
chr2	72361854	.	C	.	.	PASS	END=72361866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	72361867	.	T	.	.	PASS	END=72361872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	72361873	.	G	.	.	PASS	END=72361874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr2	72361875	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:54:60
chr2	72361876	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:78:60
chr2	72361877	.	A	.	.	PASS	END=72361878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:45:60
chr2	72361879	.	G	.	.	PASS	END=72361882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr2	72361883	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:60:60
chr2	72361884	.	C	.	.	PASS	END=72361888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	72361889	.	C	.	.	PASS	END=72361890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:51:60
chr2	72361891	.	T	.	.	PASS	END=72361905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	72361906	.	G	.	.	PASS	END=72361916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	72361917	.	C	.	.	PASS	END=72361943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	72361944	.	G	.	.	PASS	END=72361959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	72361960	.	A	.	.	PASS	END=72361976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	72361977	.	T	.	.	PASS	END=72362076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	72362077	.	A	.	.	PASS	END=72362096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	72362222	.	G	.	.	PASS	END=72362252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	72362253	.	C	.	.	PASS	END=72362304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	72362305	.	G	.	.	PASS	END=72362418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	72362419	.	T	.	.	PASS	END=72362478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	72362479	.	C	.	.	PASS	END=72362548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	72362549	.	C	.	.	PASS	END=72362597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	72362598	.	T	.	.	PASS	END=72362599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	72371067	.	G	.	.	PASS	END=72371177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	72371178	.	C	.	.	PASS	END=72371310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	72371311	.	T	.	.	PASS	END=72371352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	72371353	.	C	.	.	PASS	END=72371374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	72371375	.	T	.	.	PASS	END=72371389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	72371390	.	G	.	.	PASS	END=72371408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr2	72371409	.	G	.	.	PASS	END=72371410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr2	72371411	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:36:60
chr2	72371412	.	G	.	.	PASS	END=72371431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	72371432	.	T	.	.	PASS	END=72371443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr2	72371444	.	T	.	.	PASS	END=72371455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	72371456	.	A	.	.	PASS	END=72371469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	72371470	.	A	.	.	PASS	END=72371477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr2	72371478	.	G	.	.	PASS	END=72371485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:36:60
chr2	72371486	.	T	.	.	PASS	END=72371495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	72374709	.	G	.	.	PASS	END=72374716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr2	72374717	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:45:60
chr2	72374718	.	G	.	.	PASS	END=72374725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr2	72374726	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:72:60
chr2	72374727	.	C	.	.	PASS	END=72374746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	72374747	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:71:60
chr2	72374748	.	G	.	.	PASS	END=72374809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	72374810	.	C	.	.	PASS	END=72374910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:83:60
chr2	72374911	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:99:60
chr2	72374912	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:74:60
chr2	72374913	.	C	.	.	PASS	END=72374943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr2	72374944	.	T	.	.	PASS	END=72374952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr2	72374953	.	T	.	.	PASS	END=72374958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr2	72374959	.	A	.	.	PASS	END=72374970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr2	72374971	.	G	.	.	PASS	END=72374975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr2	72374976	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:36:60
chr2	72374977	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:22:60
chr2	72374978	.	G	.	.	PASS	END=72374982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	72374983	.	A	.	.	PASS	END=72374985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr2	72374986	.	G	.	.	PASS	END=72374990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	72374991	.	T	.	66.11	PASS	DP=18;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:14:18:36.11:60:36
chr2	72374992	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:39:60
chr2	72374993	.	C	.	.	PASS	END=72374997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	72374998	.	C	.	.	PASS	END=72374999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	72375000	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr2	72375001	.	G	.	.	PASS	END=72375002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr2	72375003	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:60
chr2	72375004	.	G	.	.	PASS	END=72375007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	72375008	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chr2	72375009	.	A	.	57.08	LowGQX	DP=15;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:12:15:27.09:60:27
chr2	72375010	.	G	.	.	PASS	END=72375012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	72375013	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chr2	72375014	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr2	72406463	.	T	.	.	LowGQX	END=72406631	GT	./.
chr2	72411203	.	C	.	.	LowGQX	END=72411308	GT	./.
chr2	72411309	.	T	.	.	LowGQX	END=72411316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	72562063	.	C	.	.	LowGQX	END=72562064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	72562065	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	72562066	.	A	.	.	LowGQX	END=72562074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	72562075	.	C	.	.	LowGQX	.	GT	./.
chr2	72562076	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	72562077	.	T	.	.	LowGQX	END=72562079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	72562080	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	72562081	.	T	.	.	LowGQX	END=72562086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	72562087	.	C	.	.	LowGQX	.	GT	./.
chr2	72562088	.	G	.	.	LowGQX	END=72562100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	72562101	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	72562102	.	G	.	.	LowGQX	END=72562107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	72562108	.	T	.	.	LowGQX	.	GT	./.
chr2	72562109	.	G	.	.	LowGQX	END=72562113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	72562114	.	C	.	.	LowGQX	END=72562116	GT	./.
chr2	72562117	.	G	.	.	LowGQX	END=72562122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	72562123	.	C	.	.	LowGQX	.	GT	./.
chr2	72562124	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	72562125	.	G	.	.	LowGQX	.	GT	./.
chr2	72562126	.	G	.	.	LowGQX	END=72562128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	72562129	.	C	.	.	LowGQX	.	GT	./.
chr2	72562130	.	C	.	.	LowGQX	END=72562139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	72562140	.	C	.	.	LowGQX	.	GT	./.
chr2	72562141	.	T	.	.	LowGQX	END=72562147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	72562148	.	C	.	.	LowGQX	.	GT	./.
chr2	72562149	.	T	.	.	LowGQX	END=72562153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	72562154	.	G	.	.	LowGQX	END=72562156	GT	./.
chr2	72562157	.	A	.	.	LowGQX	END=72562162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	72606857	.	C	.	.	LowGQX	END=72606882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	72606883	.	G	.	.	LowGQX	END=72606999	GT	./.
chr2	72692222	.	T	.	.	LowGQX	END=72692458	GT	./.
chr2	72692459	.	G	.	.	LowGQX	END=72692468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	72707744	.	C	.	.	LowGQX	END=72707879	GT	./.
chr2	72719446	.	C	.	.	LowGQX	END=72719525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	72719526	.	G	.	.	LowGQX	.	GT	./.
chr2	72719527	.	A	.	.	LowGQX	END=72719530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	72719531	.	C	.	.	LowGQX	.	GT	./.
chr2	72719532	.	C	.	.	LowGQX	END=72719533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	72719534	.	A	.	.	LowGQX	.	GT	./.
chr2	72719535	.	A	.	.	LowGQX	END=72719554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	72719555	.	T	.	.	LowGQX	END=72719558	GT	./.
chr2	72722558	.	C	.	.	LowGQX	END=72722717	GT	./.
chr2	72723582	.	C	.	.	LowGQX	END=72723741	GT	./.
chr2	72725582	.	C	.	.	LowGQX	END=72725681	GT	./.
chr2	72727016	.	C	.	.	LowGQX	END=72727115	GT	./.
chr2	72740260	.	C	.	.	LowGQX	END=72740343	GT	./.
chr2	72740344	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	72740345	.	G	.	.	LowGQX	END=72740381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	72741736	.	T	.	.	LowGQX	END=72741835	GT	./.
chr2	72742164	.	A	.	.	LowGQX	END=72742172	GT	./.
chr2	72742173	.	A	.	.	LowGQX	END=72742263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	72786566	.	C	.	.	LowGQX	END=72786665	GT	./.
chr2	72802600	.	C	.	.	LowGQX	END=72802611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	72802612	.	G	.	.	LowGQX	.	GT	./.
chr2	72802613	.	T	.	.	LowGQX	END=72802617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	72802618	.	T	.	.	LowGQX	.	GT	./.
chr2	72802619	.	A	.	.	LowGQX	END=72802696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	72802697	.	T	.	.	LowGQX	END=72802797	GT	./.
chr2	72945231	.	C	.	.	LowGQX	END=72945288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	72945289	.	G	.	.	LowGQX	END=72945436	GT	./.
chr2	72958109	.	A	.	.	LowGQX	END=72958208	GT	./.
chr2	72958279	.	C	.	.	LowGQX	END=72958378	GT	./.
chr2	72960119	.	A	.	.	LowGQX	END=72960273	GT	./.
chr2	72968432	.	C	.	.	LowGQX	END=72968516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	72968517	.	C	.	.	LowGQX	.	GT	./.
chr2	72968518	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr2	72968519	.	C	.	.	LowGQX	.	GT	./.
chr2	72968520	.	A	.	.	LowGQX	END=72968598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73052926	.	C	.	.	LowGQX	END=73053039	GT	./.
chr2	73114511	.	C	.	.	PASS	END=73114516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr2	73114517	.	C	.	.	PASS	END=73114528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	73114529	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:52:60
chr2	73114530	.	G	.	.	PASS	END=73114568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr2	73114569	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:76:60
chr2	73114570	.	C	.	.	PASS	END=73114592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:82:60
chr2	73114593	.	T	.	.	PASS	END=73114733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	73114734	.	G	.	.	PASS	END=73114755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	73114756	.	G	.	.	PASS	END=73114900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	73114901	.	A	.	.	PASS	END=73114916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	73115392	.	A	.	.	PASS	END=73115497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr2	73115498	.	G	.	.	PASS	END=73115510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr2	73115511	.	G	.	.	PASS	END=73115658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:245:99:60
chr2	73115659	.	A	.	.	PASS	END=73115784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr2	73118425	.	T	.	.	PASS	END=73118430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr2	73118431	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:72:60
chr2	73118432	.	C	.	.	PASS	END=73118449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	73118450	.	C	.	.	PASS	END=73118469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	73118470	.	C	.	.	PASS	END=73118484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	73118485	.	A	.	.	PASS	END=73118504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	73118505	.	G	.	.	PASS	END=73118640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	73118641	.	C	.	.	PASS	END=73118667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	73118668	.	C	.	.	PASS	END=73118717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	73143812	.	G	.	.	LowGQX	END=73143861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73143862	.	A	.	.	LowGQX	.	GT	./.
chr2	73143863	.	G	.	.	LowGQX	END=73143898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73143899	.	C	.	.	LowGQX	.	GT	./.
chr2	73143900	.	C	.	.	LowGQX	END=73143913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73143914	.	A	.	.	LowGQX	.	GT	./.
chr2	73143915	.	A	.	.	LowGQX	END=73143919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73143920	.	A	.	.	LowGQX	.	GT	./.
chr2	73143921	.	G	.	.	LowGQX	END=73143934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73143935	.	C	.	.	LowGQX	.	GT	./.
chr2	73143936	.	A	.	.	LowGQX	END=73143939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73143940	.	C	.	.	LowGQX	.	GT	./.
chr2	73143941	.	C	.	.	LowGQX	END=73143942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73143943	.	A	.	.	LowGQX	.	GT	./.
chr2	73143944	.	G	.	.	LowGQX	END=73143947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73143948	.	C	.	.	LowGQX	.	GT	./.
chr2	73143949	.	G	.	.	LowGQX	END=73143951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73143952	.	G	.	.	LowGQX	END=73144005	GT	./.
chr2	73144006	.	C	.	.	LowGQX	END=73144156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73144157	.	C	.	.	LowGQX	END=73144189	GT	./.
chr2	73144969	.	C	.	.	LowGQX	END=73145503	GT	./.
chr2	73151317	.	A	.	.	LowGQX	END=73151336	GT	./.
chr2	73151337	.	T	.	.	LowGQX	END=73151371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73151372	.	C	.	.	LowGQX	.	GT	./.
chr2	73151373	.	C	.	.	LowGQX	END=73151378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73151379	.	A	.	.	LowGQX	.	GT	./.
chr2	73151380	.	C	.	.	LowGQX	END=73151382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73151383	.	C	.	.	LowGQX	.	GT	./.
chr2	73151384	.	G	.	.	LowGQX	END=73151389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73151390	.	T	.	.	LowGQX	.	GT	./.
chr2	73151391	.	C	.	.	LowGQX	END=73151396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73151397	.	G	.	.	LowGQX	.	GT	./.
chr2	73151398	.	T	.	.	LowGQX	END=73151405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73151406	.	T	.	.	LowGQX	.	GT	./.
chr2	73151407	.	G	.	.	LowGQX	END=73151431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73151432	.	C	.	.	LowGQX	.	GT	./.
chr2	73151433	.	C	.	.	LowGQX	END=73151434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73151435	.	C	.	.	LowGQX	END=73151436	GT	./.
chr2	73151437	.	G	.	.	LowGQX	END=73151439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73151440	.	A	.	.	LowGQX	.	GT	./.
chr2	73151441	.	G	.	.	LowGQX	END=73151442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73151443	.	G	.	.	LowGQX	END=73151444	GT	./.
chr2	73151445	.	C	.	.	LowGQX	END=73151455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73151456	.	A	.	.	LowGQX	.	GT	./.
chr2	73151457	.	C	.	.	LowGQX	END=73151463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73151464	.	C	.	.	LowGQX	.	GT	./.
chr2	73151465	.	T	.	.	LowGQX	END=73151467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73151468	.	T	.	.	LowGQX	.	GT	./.
chr2	73151469	.	G	.	.	LowGQX	END=73151470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73151471	.	A	.	.	LowGQX	.	GT	./.
chr2	73151472	.	C	.	.	LowGQX	END=73151474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73151475	.	C	.	.	LowGQX	.	GT	./.
chr2	73151476	.	C	.	.	LowGQX	END=73151478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73151479	.	T	.	.	LowGQX	.	GT	./.
chr2	73151480	.	T	.	.	LowGQX	END=73151482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73151483	.	C	.	.	LowGQX	.	GT	./.
chr2	73151484	.	A	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	73151485	.	C	.	.	LowGQX	END=73151486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73151487	.	C	.	.	LowGQX	END=73151523	GT	./.
chr2	73151524	.	C	.	.	LowGQX	END=73151578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73151579	.	A	.	.	LowGQX	.	GT	./.
chr2	73151580	.	G	.	.	LowGQX	END=73151624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73152568	.	G	.	.	LowGQX	END=73152670	GT	./.
chr2	73160914	.	A	.	.	LowGQX	END=73161085	GT	./.
chr2	73172140	.	G	.	.	LowGQX	END=73172141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73172142	.	T	.	.	LowGQX	.	GT	./.
chr2	73172143	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73172144	.	A	.	.	LowGQX	.	GT	./.
chr2	73172145	.	C	.	.	LowGQX	END=73172146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73172147	.	A	.	.	LowGQX	END=73172148	GT	./.
chr2	73172149	.	A	.	.	LowGQX	END=73172152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73172153	.	A	.	.	LowGQX	.	GT	./.
chr2	73172154	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73172155	.	A	.	.	LowGQX	END=73172156	GT	./.
chr2	73172157	.	C	.	.	LowGQX	END=73172160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73172161	.	T	.	.	LowGQX	END=73172164	GT	./.
chr2	73172165	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73172166	.	G	.	.	LowGQX	.	GT	./.
chr2	73172167	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73172168	.	A	.	.	LowGQX	.	GT	./.
chr2	73172169	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73172170	.	A	.	.	LowGQX	END=73172239	GT	./.
chr2	73184109	.	C	.	.	LowGQX	END=73184232	GT	./.
chr2	73188217	.	G	.	.	LowGQX	END=73188427	GT	./.
chr2	73195570	.	A	.	.	LowGQX	END=73195669	GT	./.
chr2	73198697	.	A	.	.	LowGQX	END=73198816	GT	./.
chr2	73215383	.	T	.	.	LowGQX	END=73215482	GT	./.
chr2	73226061	.	G	.	.	LowGQX	END=73226160	GT	./.
chr2	73227539	.	G	.	.	LowGQX	END=73227638	GT	./.
chr2	73228631	.	C	.	.	LowGQX	END=73228691	GT	./.
chr2	73228692	.	A	.	.	LowGQX	END=73228730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73247331	.	T	.	.	LowGQX	END=73247430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73249629	.	C	.	.	LowGQX	END=73249728	GT	./.
chr2	73250281	.	A	.	.	LowGQX	END=73250380	GT	./.
chr2	73267972	.	C	.	.	LowGQX	END=73268071	GT	./.
chr2	73268714	.	G	.	.	LowGQX	END=73268813	GT	./.
chr2	73285642	.	A	.	.	LowGQX	END=73285741	GT	./.
chr2	73298731	.	A	.	.	LowGQX	END=73298803	GT	./.
chr2	73298804	.	C	.	.	LowGQX	END=73298810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73298811	.	T	.	.	LowGQX	.	GT	./.
chr2	73298812	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73298813	.	C	.	.	LowGQX	END=73298814	GT	./.
chr2	73298815	.	G	.	.	LowGQX	END=73298818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73298819	.	T	.	.	LowGQX	.	GT	./.
chr2	73298820	.	C	.	.	LowGQX	END=73298822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73298823	.	T	.	.	LowGQX	END=73298827	GT	./.
chr2	73298828	.	C	.	.	LowGQX	END=73298830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73298831	.	C	.	.	LowGQX	.	GT	./.
chr2	73298832	.	C	.	.	LowGQX	END=73298836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73302333	.	C	.	.	LowGQX	END=73302334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73302335	.	A	.	.	LowGQX	END=73302336	GT	./.
chr2	73302337	.	A	.	.	LowGQX	END=73302338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73302339	.	T	.	.	LowGQX	.	GT	./.
chr2	73302340	.	T	.	.	LowGQX	END=73302341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73302342	.	A	.	.	LowGQX	.	GT	./.
chr2	73302343	.	C	.	.	LowGQX	END=73302346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73302347	.	T	.	.	LowGQX	END=73302348	GT	./.
chr2	73302349	.	C	.	.	LowGQX	END=73302351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73302352	.	T	.	.	LowGQX	.	GT	./.
chr2	73302353	.	G	.	.	LowGQX	END=73302359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73302360	.	G	.	.	LowGQX	.	GT	./.
chr2	73302361	.	G	.	.	LowGQX	END=73302363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73302364	.	A	.	.	LowGQX	.	GT	./.
chr2	73302365	.	G	.	.	LowGQX	END=73302371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73302372	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	73302373	.	A	.	.	LowGQX	END=73302410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73302411	.	G	.	.	LowGQX	END=73302426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	73302427	.	C	.	.	LowGQX	END=73302432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	73302433	.	C	.	.	LowGQX	END=73302435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	73302436	.	C	.	.	LowGQX	END=73302459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	73302460	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	73302461	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr2	73302462	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr2	73302463	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	73302464	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	73302465	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	73302466	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	73302467	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	73302468	.	T	.	.	LowGQX	END=73302471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr2	73302472	.	T	.	.	PASS	END=73302485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	73302486	.	A	.	.	PASS	END=73302487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	73302488	.	A	.	.	PASS	END=73302490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	73302491	.	G	.	.	PASS	END=73302492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr2	73302493	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:9:60
chr2	73302494	.	C	.	.	PASS	END=73302500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	73302501	.	A	.	.	PASS	END=73302502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr2	73302503	.	C	.	.	PASS	END=73302505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	73302506	.	C	.	.	PASS	END=73302514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr2	73302515	.	A	.	.	PASS	END=73302520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	73302521	.	G	.	.	PASS	END=73302534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr2	73302535	.	A	.	.	PASS	END=73302541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	73302542	.	A	.	.	PASS	END=73302544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	73302545	.	A	.	.	PASS	END=73302555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr2	73302556	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:33:60
chr2	73302557	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:54:60
chr2	73302558	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:99:60
chr2	73302559	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:72:60
chr2	73302560	.	T	.	.	PASS	END=73302580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr2	73302581	.	G	.	.	PASS	END=73302605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	73302606	.	C	.	.	PASS	END=73302626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	73302627	.	C	.	.	PASS	END=73302660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	73302661	.	G	.	.	PASS	END=73302674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	73302675	.	G	.	.	PASS	END=73302693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	73302694	.	C	.	.	PASS	END=73302735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr2	73302736	.	C	.	.	PASS	END=73302830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr2	73302831	.	A	.	.	PASS	END=73302848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr2	73302849	.	A	.	.	PASS	END=73302854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr2	73303119	.	A	.	.	PASS	END=73303211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	73303212	.	A	.	.	PASS	END=73303228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	73303229	.	T	.	.	PASS	END=73303240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	73303241	.	G	.	.	PASS	END=73303255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	73303256	.	C	.	.	PASS	END=73303276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:92:60
chr2	73303277	.	A	.	.	PASS	END=73303287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr2	73303288	.	T	.	.	PASS	END=73303296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr2	73303297	.	T	.	.	PASS	END=73303300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	73303301	.	G	.	.	PASS	END=73303304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr2	73303305	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:48:60
chr2	73303306	.	G	.	.	PASS	END=73303312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:78:60
chr2	73315176	.	A	.	.	PASS	END=73315350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr2	73315351	.	G	.	.	PASS	END=73315688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr2	73315689	.	G	.	.	PASS	END=73315725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr2	73315726	.	C	.	.	PASS	END=73315857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:288:99:60
chr2	73315858	.	G	.	.	PASS	END=73315873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr2	73315874	.	C	.	.	PASS	END=73315879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr2	73316005	.	A	.	.	PASS	END=73316101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	73316102	.	A	.	.	PASS	END=73316145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	73316146	.	C	.	.	PASS	END=73316210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	73316211	.	G	.	.	PASS	END=73316326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	73316327	.	T	.	.	PASS	END=73316453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	73316454	.	A	.	.	PASS	END=73316477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	73316478	.	C	.	.	PASS	END=73316496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr2	73316497	.	T	.	.	PASS	END=73316514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr2	73316515	.	A	.	.	PASS	END=73316526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr2	73316527	.	C	.	.	PASS	END=73316539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr2	73316540	.	A	.	.	PASS	END=73316557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr2	73316558	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	73316559	.	C	.	.	PASS	END=73316562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr2	73316563	.	A	.	.	LowGQX	END=73316567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	73316568	.	C	.	.	LowGQX	END=73316583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr2	73316584	.	T	.	.	LowGQX	END=73316598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr2	73316599	.	A	.	.	LowGQX	END=73316603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	73316604	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr2	73316605	.	C	.	.	LowGQX	END=73316608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	73316609	.	T	.	.	LowGQX	END=73316634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	73316635	.	T	.	.	LowGQX	END=73316640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73339473	.	A	.	.	PASS	END=73339563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	73339564	.	G	.	.	PASS	END=73339647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	73339648	.	C	.	.	PASS	END=73339707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	73339708	.	G	A	4044.59	PASS	DP=172;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=32.3330;MQ=60;MQ0=0;QD=23.52;SB=-1462.42	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,162:172:99:4045,310,0:60:99:1.000
chr2	73339709	.	C	.	.	PASS	END=73339736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	73339737	.	T	.	.	PASS	END=73339769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	73339770	.	T	.	.	PASS	END=73339797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	73339798	.	C	.	.	PASS	END=73339855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	73339856	.	A	.	.	PASS	END=73339907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:87:60
chr2	73429794	.	C	.	.	LowGQX	END=73429886	GT	./.
chr2	73429887	.	G	.	.	LowGQX	END=73429909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73429910	.	C	.	.	LowGQX	.	GT	./.
chr2	73429911	.	C	.	.	LowGQX	END=73429918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73429919	.	C	.	.	LowGQX	.	GT	./.
chr2	73429920	.	C	.	.	LowGQX	END=73429959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73429960	.	G	.	.	LowGQX	.	GT	./.
chr2	73429961	.	C	.	.	LowGQX	END=73430030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73430031	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	73430032	.	A	.	.	LowGQX	END=73430041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73430042	.	C	.	.	LowGQX	.	GT	./.
chr2	73430043	.	C	.	.	LowGQX	END=73430057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73430058	.	G	.	.	LowGQX	END=73430059	GT	./.
chr2	73430060	.	G	.	.	LowGQX	END=73430065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73430066	.	C	.	.	LowGQX	.	GT	./.
chr2	73430067	.	C	.	.	LowGQX	END=73430076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73430077	.	C	.	.	LowGQX	.	GT	./.
chr2	73430078	.	C	.	.	LowGQX	END=73430085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73430086	.	T	.	.	LowGQX	.	GT	./.
chr2	73430087	.	G	.	.	LowGQX	END=73430088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73430089	.	C	.	.	LowGQX	.	GT	./.
chr2	73430090	.	T	.	.	LowGQX	END=73430113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73430114	.	T	.	.	LowGQX	END=73430176	GT	./.
chr2	73435527	.	G	.	.	LowGQX	END=73435530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73435531	.	T	.	.	LowGQX	.	GT	./.
chr2	73435532	.	G	.	.	LowGQX	END=73435595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73435596	.	G	.	.	LowGQX	END=73435742	GT	./.
chr2	73437898	.	G	.	.	LowGQX	END=73438057	GT	./.
chr2	73441393	.	A	.	.	LowGQX	END=73441492	GT	./.
chr2	73441821	.	A	.	.	LowGQX	END=73441920	GT	./.
chr2	73445987	.	A	.	.	LowGQX	END=73446099	GT	./.
chr2	73447049	.	A	.	.	LowGQX	END=73447148	GT	./.
chr2	73447177	.	A	.	.	LowGQX	END=73447320	GT	./.
chr2	73447787	.	A	.	.	LowGQX	END=73447803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73447804	.	G	T	7.08	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=3.54;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:36,3,0:60:3:1.000
chr2	73447805	.	C	.	.	LowGQX	END=73447856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73447857	.	C	.	.	LowGQX	END=73447912	GT	./.
chr2	73448278	.	T	.	.	LowGQX	END=73448377	GT	./.
chr2	73448952	.	A	.	.	LowGQX	END=73449060	GT	./.
chr2	73449865	.	C	.	.	LowGQX	END=73449919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73449920	.	C	.	.	LowGQX	END=73449964	GT	./.
chr2	73450150	.	T	.	.	LowGQX	END=73450249	GT	./.
chr2	73450552	.	A	.	.	LowGQX	END=73450662	GT	./.
chr2	73451054	.	G	.	.	LowGQX	END=73451153	GT	./.
chr2	73451992	.	A	.	.	LowGQX	END=73452091	GT	./.
chr2	73452745	.	T	.	.	LowGQX	END=73452844	GT	./.
chr2	73452922	.	A	.	.	LowGQX	END=73452931	GT	./.
chr2	73452932	.	A	.	.	LowGQX	END=73452936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73452937	.	T	.	.	LowGQX	.	GT	./.
chr2	73452938	.	T	.	.	LowGQX	END=73452947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73452948	.	C	.	.	LowGQX	.	GT	./.
chr2	73452949	.	T	.	.	LowGQX	END=73452952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73452953	.	C	.	.	LowGQX	END=73452954	GT	./.
chr2	73452955	.	A	.	.	LowGQX	END=73452959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73452960	.	C	.	.	LowGQX	.	GT	./.
chr2	73452961	.	C	.	.	LowGQX	END=73452965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73452966	.	A	.	.	LowGQX	.	GT	./.
chr2	73452967	.	G	.	.	LowGQX	END=73452986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73452987	.	G	.	.	LowGQX	.	GT	./.
chr2	73452988	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73452989	.	C	.	.	LowGQX	END=73452990	GT	./.
chr2	73452991	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73452992	.	C	.	.	LowGQX	.	GT	./.
chr2	73452993	.	A	.	.	LowGQX	END=73453002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73453003	.	G	.	.	LowGQX	.	GT	./.
chr2	73453004	.	A	.	.	LowGQX	END=73453013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73453014	.	G	.	.	LowGQX	.	GT	./.
chr2	73453015	.	G	.	.	LowGQX	END=73453024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73453025	.	A	.	.	LowGQX	.	GT	./.
chr2	73453026	.	A	.	.	LowGQX	END=73453076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73455580	.	T	.	.	LowGQX	END=73455618	GT	./.
chr2	73455619	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73455620	.	T	.	.	LowGQX	END=73455621	GT	./.
chr2	73455622	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73455623	.	G	.	.	LowGQX	.	GT	./.
chr2	73455624	.	G	.	.	LowGQX	END=73455632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73455633	.	G	.	.	LowGQX	.	GT	./.
chr2	73455634	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73455635	.	C	.	.	LowGQX	.	GT	./.
chr2	73455636	.	A	.	.	LowGQX	END=73455637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73455638	.	T	.	.	LowGQX	.	GT	./.
chr2	73455639	.	G	.	.	LowGQX	END=73455640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73455641	.	C	.	.	LowGQX	.	GT	./.
chr2	73455642	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73455643	.	G	.	.	LowGQX	END=73455645	GT	./.
chr2	73455646	.	A	.	.	LowGQX	END=73455648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73455649	.	G	.	.	LowGQX	.	GT	./.
chr2	73455650	.	A	.	.	LowGQX	END=73455651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73455652	.	A	.	.	LowGQX	.	GT	./.
chr2	73455653	.	T	.	.	LowGQX	END=73455657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73455658	.	G	.	.	LowGQX	.	GT	./.
chr2	73455659	.	C	.	.	LowGQX	END=73455662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73455663	.	T	.	.	LowGQX	END=73455664	GT	./.
chr2	73455665	.	G	.	.	LowGQX	END=73455673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73455674	.	G	.	.	LowGQX	END=73455675	GT	./.
chr2	73455676	.	T	.	.	LowGQX	END=73455678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73455679	.	T	.	.	LowGQX	.	GT	./.
chr2	73455680	.	C	.	.	LowGQX	END=73455686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73455687	.	G	.	.	LowGQX	END=73455688	GT	./.
chr2	73455689	.	G	.	.	LowGQX	END=73455695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73455696	.	C	.	.	LowGQX	.	GT	./.
chr2	73455697	.	A	.	.	LowGQX	END=73455698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73455699	.	G	.	.	LowGQX	.	GT	./.
chr2	73455700	.	T	.	.	LowGQX	END=73455704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73455921	.	A	.	.	LowGQX	END=73456110	GT	./.
chr2	73456587	.	A	.	.	LowGQX	.	GT	./.
chr2	73456588	.	C	.	.	LowGQX	END=73456604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73456605	.	C	.	.	LowGQX	END=73456606	GT	./.
chr2	73456607	.	A	.	.	LowGQX	END=73456669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73456670	.	A	.	.	LowGQX	.	GT	./.
chr2	73456671	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73456672	.	A	.	.	LowGQX	END=73456700	GT	./.
chr2	73457239	.	A	.	.	LowGQX	END=73457343	GT	./.
chr2	73460146	.	G	.	.	LowGQX	END=73460239	GT	./.
chr2	73460240	.	C	.	.	LowGQX	END=73460273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73460274	.	G	.	.	LowGQX	.	GT	./.
chr2	73460275	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73460276	.	C	.	.	LowGQX	.	GT	./.
chr2	73460277	.	G	.	.	LowGQX	END=73460283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73460284	.	A	.	.	LowGQX	END=73460285	GT	./.
chr2	73460286	.	C	.	.	LowGQX	END=73460288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73460289	.	C	.	.	LowGQX	END=73460291	GT	./.
chr2	73460292	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73460293	.	A	.	.	LowGQX	END=73460294	GT	./.
chr2	73460295	.	G	.	.	LowGQX	END=73460296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73460297	.	C	.	.	LowGQX	.	GT	./.
chr2	73460298	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73460299	.	G	.	.	LowGQX	.	GT	./.
chr2	73460300	.	G	.	.	LowGQX	END=73460304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73460305	.	G	.	.	LowGQX	.	GT	./.
chr2	73461460	.	T	.	.	LowGQX	END=73461559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73466770	.	G	.	.	LowGQX	END=73466818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73466819	.	A	.	.	LowGQX	END=73466923	GT	./.
chr2	73466924	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73467564	.	G	.	.	LowGQX	END=73467671	GT	./.
chr2	73470071	.	A	.	.	LowGQX	END=73470257	GT	./.
chr2	73471101	.	T	.	.	LowGQX	END=73471200	GT	./.
chr2	73471671	.	G	.	.	LowGQX	END=73471843	GT	./.
chr2	73474888	.	A	.	.	LowGQX	END=73475056	GT	./.
chr2	73476117	.	A	.	.	LowGQX	END=73476309	GT	./.
chr2	73476945	.	A	.	.	LowGQX	END=73477046	GT	./.
chr2	73477432	.	A	.	.	LowGQX	END=73477568	GT	./.
chr2	73478352	.	A	.	.	LowGQX	END=73478562	GT	./.
chr2	73479766	.	A	.	.	LowGQX	END=73479991	GT	./.
chr2	73486091	.	C	.	.	LowGQX	END=73486190	GT	./.
chr2	73486308	.	C	.	.	LowGQX	END=73486424	GT	./.
chr2	73487516	.	C	.	.	LowGQX	END=73487532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73487533	.	G	.	.	LowGQX	.	GT	./.
chr2	73487534	.	G	.	.	LowGQX	END=73487543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73487544	.	T	.	.	LowGQX	.	GT	./.
chr2	73487545	.	G	.	.	LowGQX	END=73487548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73487549	.	G	.	.	LowGQX	.	GT	./.
chr2	73487550	.	G	.	.	LowGQX	END=73487558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73487559	.	T	.	.	LowGQX	.	GT	./.
chr2	73487560	.	G	.	.	LowGQX	END=73487577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73487578	.	T	.	.	LowGQX	.	GT	./.
chr2	73487579	.	C	.	.	LowGQX	END=73487600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73487601	.	C	.	.	LowGQX	.	GT	./.
chr2	73487602	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73487603	.	T	.	.	LowGQX	END=73487675	GT	./.
chr2	73487867	.	C	.	.	LowGQX	END=73487986	GT	./.
chr2	73490279	.	T	.	.	LowGQX	END=73490292	GT	./.
chr2	73490293	.	G	.	.	LowGQX	END=73490372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73490373	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	73490374	.	A	.	.	LowGQX	END=73490385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73490386	.	C	A	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9992;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:30.11:33,0,30:60:5:0.667
chr2	73490387	.	C	.	.	LowGQX	END=73490390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	73490391	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	73490392	.	C	.	.	LowGQX	END=73490438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73490805	.	C	.	.	LowGQX	END=73490958	GT	./.
chr2	73491014	.	T	.	.	LowGQX	END=73491181	GT	./.
chr2	73491405	.	C	.	.	LowGQX	END=73491647	GT	./.
chr2	73492409	.	C	.	.	LowGQX	END=73492474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73492475	.	C	.	.	LowGQX	END=73492490	GT	./.
chr2	73492491	.	C	.	.	LowGQX	END=73492579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73492580	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	73492581	.	G	.	.	LowGQX	END=73492639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73492640	.	T	.	.	LowGQX	.	GT	./.
chr2	73492641	.	G	.	.	LowGQX	END=73492697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73492698	.	T	.	.	LowGQX	END=73492768	GT	./.
chr2	73493008	.	G	.	.	LowGQX	END=73493107	GT	./.
chr2	73493584	.	C	.	.	LowGQX	END=73493810	GT	./.
chr2	73495853	.	C	.	.	LowGQX	END=73495994	GT	./.
chr2	73495995	.	C	.	.	LowGQX	END=73496123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73496124	.	T	.	.	LowGQX	END=73496850	GT	./.
chr2	73497947	.	T	.	.	LowGQX	END=73498046	GT	./.
chr2	73513180	.	A	.	.	LowGQX	END=73513305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73513306	.	G	.	.	LowGQX	.	GT	./.
chr2	73513307	.	G	.	.	LowGQX	END=73513326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73513327	.	G	.	.	LowGQX	END=73513512	GT	./.
chr2	73518583	.	G	.	.	LowGQX	END=73518587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	73518588	.	G	.	.	LowGQX	END=73518594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	73518595	.	G	.	.	LowGQX	END=73518603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	73518604	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr2	73518605	.	G	.	.	LowGQX	END=73518609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr2	73518610	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr2	73518611	.	G	.	.	LowGQX	END=73518627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	73518628	.	C	.	.	PASS	END=73518633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	73518634	.	A	.	.	LowGQX	END=73518635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	73518636	.	C	.	.	PASS	END=73518643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	73518644	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	73518645	.	G	.	.	PASS	END=73518652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	73518653	.	C	.	.	LowGQX	END=73518654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	73518655	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:15:60
chr2	73518656	.	T	.	.	PASS	END=73518661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	73518662	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	73518663	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr2	73518664	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	73518665	.	G	.	.	PASS	END=73518669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	73518670	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr2	73518671	.	C	.	.	PASS	END=73518672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	73518673	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr2	73518674	.	T	.	.	PASS	END=73518681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	73518682	.	C	.	.	PASS	END=73518687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:33:60
chr2	73518688	.	T	.	.	PASS	END=73518692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr2	73518693	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:60
chr2	73518694	.	T	.	.	PASS	END=73518704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr2	73518705	.	G	.	.	PASS	END=73518707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:33:60
chr2	73518708	.	G	.	.	PASS	END=73518720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	73518721	.	A	.	.	PASS	END=73518725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr2	73518726	.	G	.	.	PASS	END=73518754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr2	73518755	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:39:60
chr2	73518756	.	G	.	.	PASS	END=73518769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr2	73518770	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:42:60
chr2	73518771	.	G	.	.	PASS	END=73518777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr2	73518778	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:45:60
chr2	73518779	.	C	.	.	PASS	END=73518784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr2	73518785	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:24:60
chr2	73518786	.	G	.	.	PASS	END=73518792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr2	73518793	.	T	.	.	PASS	END=73518795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr2	73518796	.	C	.	.	PASS	END=73518818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	73518819	.	G	.	.	PASS	END=73518832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	73518833	.	T	.	.	PASS	END=73518837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr2	73518838	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:48:60
chr2	73518839	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:33:60
chr2	73518840	.	G	.	.	PASS	END=73518846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	73518847	.	T	.	.	PASS	END=73518849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:30:60
chr2	73518850	.	C	.	.	PASS	END=73518861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr2	73518862	.	T	.	.	PASS	END=73518866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	73518867	.	G	A	204.99	PASS	BaseQRankSum=-0.993;DP=15;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.652;QD=13.67;ReadPosRankSum=-0.772;SB=-30.12	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:7,8:15:99:235,0,166:60:99:0.533
chr2	73518868	.	C	.	.	PASS	END=73518871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	73518872	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	73518873	.	A	.	.	PASS	END=73518875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	73518876	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	73518877	.	C	.	.	PASS	END=73518878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	73518879	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:0:60
chr2	73518880	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	73518881	.	G	.	.	PASS	END=73518886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	73518887	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	73518888	.	A	.	.	PASS	END=73518889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	73518890	.	T	.	.	LowGQX	END=73518891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr2	73518892	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr2	73518893	.	C	.	.	LowGQX	END=73518896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	73518897	.	C	.	.	LowGQX	END=73518900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	73518901	.	C	.	.	LowGQX	END=73518912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr2	73518913	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr2	73518914	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	73518915	.	G	.	.	LowGQX	END=73518918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	73518919	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	73518920	.	G	.	.	LowGQX	END=73518946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	73518947	.	T	.	.	LowGQX	END=73519000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73519001	.	T	.	.	LowGQX	.	GT	./.
chr2	73519002	.	G	.	.	LowGQX	END=73519022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73519023	.	T	.	.	LowGQX	.	GT	./.
chr2	73519024	.	G	.	.	LowGQX	END=73519025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73519026	.	T	.	.	LowGQX	.	GT	./.
chr2	73519027	.	G	.	.	LowGQX	END=73519051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73519052	.	T	.	.	LowGQX	END=73519715	GT	./.
chr2	73519716	.	G	.	.	LowGQX	END=73519773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73519774	.	A	.	.	LowGQX	.	GT	./.
chr2	73519775	.	C	.	.	LowGQX	END=73519784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73519785	.	G	.	.	LowGQX	.	GT	./.
chr2	73519786	.	A	.	.	LowGQX	END=73519820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73519821	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	73519822	.	G	.	.	LowGQX	END=73519868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73519869	.	T	.	.	LowGQX	.	GT	./.
chr2	73519870	.	G	.	.	LowGQX	END=73519890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73519891	.	C	.	.	LowGQX	END=73519911	GT	./.
chr2	73520308	.	A	.	.	LowGQX	END=73520334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520335	.	A	.	.	LowGQX	.	GT	./.
chr2	73520336	.	G	.	.	LowGQX	END=73520359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520360	.	A	.	.	LowGQX	.	GT	./.
chr2	73520361	.	A	.	.	LowGQX	END=73520376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520377	.	G	.	.	LowGQX	.	GT	./.
chr2	73520378	.	G	.	.	LowGQX	END=73520381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520382	.	A	.	.	LowGQX	.	GT	./.
chr2	73520383	.	A	.	.	LowGQX	END=73520388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520389	.	T	.	.	LowGQX	END=73520390	GT	./.
chr2	73520391	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520392	.	A	.	.	LowGQX	END=73520397	GT	./.
chr2	73520398	.	C	.	.	LowGQX	END=73520406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520407	.	G	.	.	LowGQX	END=73520410	GT	./.
chr2	73520411	.	G	.	.	LowGQX	END=73520413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520414	.	T	.	.	LowGQX	END=73520415	GT	./.
chr2	73520416	.	G	.	.	LowGQX	END=73520419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520420	.	T	.	.	LowGQX	END=73520421	GT	./.
chr2	73520422	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520423	.	G	.	.	LowGQX	.	GT	./.
chr2	73520424	.	A	.	.	LowGQX	END=73520425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520426	.	A	.	.	LowGQX	END=73520427	GT	./.
chr2	73520428	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520429	.	T	.	.	LowGQX	END=73520430	GT	./.
chr2	73520431	.	G	.	.	LowGQX	END=73520432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520433	.	T	.	.	LowGQX	.	GT	./.
chr2	73520434	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520435	.	A	.	.	LowGQX	.	GT	./.
chr2	73520436	.	G	.	.	LowGQX	END=73520440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520441	.	A	.	.	LowGQX	.	GT	./.
chr2	73520442	.	G	.	.	LowGQX	END=73520444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520445	.	T	.	.	LowGQX	.	GT	./.
chr2	73520446	.	G	.	.	LowGQX	END=73520455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520456	.	C	.	.	LowGQX	.	GT	./.
chr2	73520457	.	G	.	.	LowGQX	END=73520461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520462	.	T	.	.	LowGQX	.	GT	./.
chr2	73520463	.	G	.	.	LowGQX	END=73520476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520477	.	C	.	.	LowGQX	END=73520478	GT	./.
chr2	73520479	.	C	.	.	LowGQX	END=73520568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520569	.	C	.	.	LowGQX	END=73520570	GT	./.
chr2	73520571	.	T	.	.	LowGQX	END=73520576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520577	.	A	.	.	LowGQX	.	GT	./.
chr2	73520578	.	C	.	.	LowGQX	END=73520583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520584	.	T	.	.	LowGQX	.	GT	./.
chr2	73520585	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520586	.	T	.	.	LowGQX	.	GT	./.
chr2	73520587	.	G	.	.	LowGQX	END=73520589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520590	.	A	.	.	LowGQX	.	GT	./.
chr2	73520591	.	A	.	.	LowGQX	END=73520594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520595	.	A	.	.	LowGQX	.	GT	./.
chr2	73520596	.	G	.	.	LowGQX	END=73520602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520603	.	A	.	.	LowGQX	END=73520673	GT	./.
chr2	73520674	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520675	.	T	.	.	LowGQX	.	GT	./.
chr2	73520676	.	C	.	.	LowGQX	END=73520714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73520715	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	73520716	.	C	.	.	LowGQX	END=73520762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73612946	.	C	.	.	PASS	END=73612958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:59
chr2	73612959	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:57:60
chr2	73612960	.	C	.	.	PASS	END=73612961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	73612962	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:54:60
chr2	73612963	.	C	.	.	PASS	END=73612964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	73612965	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:60:60
chr2	73612966	.	C	.	.	PASS	END=73612967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr2	73612968	.	T	.	.	PASS	END=73612969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:54:60
chr2	73612970	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:96:60
chr2	73612971	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:54:60
chr2	73612972	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:78:60
chr2	73612973	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:48:60
chr2	73612974	.	G	.	.	PASS	END=73612980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr2	73612981	.	A	.	.	PASS	END=73612982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:54:60
chr2	73612983	.	A	.	66.10	PASS	DP=39;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:31:39:36.10:60:36
chr2	73612984	.	G	.	.	PASS	END=73612986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr2	73612987	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:36:1:60
chr2	73612988	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:81:60
chr2	73612989	.	A	.	78.10	PASS	DP=37;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:29:37:48.11:60:48
chr2	73612990	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:93:60
chr2	73612991	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:37:22:60
chr2	73612992	.	C	.	.	PASS	END=73612993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr2	73612994	.	A	.	.	PASS	END=73612995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:54:60
chr2	73612996	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:96:60
chr2	73612997	.	A	.	.	PASS	END=73612999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:57:60
chr2	73613000	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:84:60
chr2	73613001	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:34:28:60
chr2	73613002	.	G	.	.	PASS	END=73613006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr2	73613007	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:60
chr2	73613008	.	G	.	.	PASS	END=73613009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr2	73613010	.	A	.	.	PASS	END=73613011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:51:60
chr2	73613012	.	C	.	.	PASS	END=73613016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr2	73613017	.	A	.	.	PASS	END=73613018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:54:60
chr2	73613019	.	G	.	.	PASS	END=73613027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:59
chr2	73613028	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:37:15:59
chr2	73613029	.	G	.	.	PASS	END=73613031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:63:59
chr2	73613031	.	TGGAGGA	TGGAGGAGGA,T	1059.44	PASS	BaseQRankSum=-1.149;DP=37;FS=5.310;HaplotypeScore=308.9818;MQ=59;MQ0=0;MQRankSum=-0.704;QD=28.63;ReadPosRankSum=-0.037;SB=-405.58	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/2:18,0,12:37:99:1138,871,1401,144,0,867:59:99:0.400
chr2	73613032	.	G	.	.	LowGQX	DP=37;MQ=59;MQ0=0	GT:AD:DP:MQ	.:23:23:59
chr2	73613033	.	G	.	.	LowGQX	DP=37;MQ=59;MQ0=0	GT:AD:DP:MQ	.:23:23:59
chr2	73613034	.	A	.	.	LowGQX	DP=37;MQ=59;MQ0=0	GT:AD:DP:MQ	.:23:23:59
chr2	73613035	.	G	.	.	LowGQX	DP=37;MQ=59;MQ0=0	GT:AD:DP:MQ	.:23:23:59
chr2	73613036	.	G	.	.	LowGQX	DP=36;MQ=59;MQ0=0	GT:AD:DP:MQ	.:22:22:59
chr2	73613037	.	A	.	.	LowGQX	DP=37;MQ=59;MQ0=0	GT:AD:DP:MQ	.:20:23:59
chr2	73613038	.	G	.	.	PASS	END=73613039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:59
chr2	73613040	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:69:59
chr2	73613041	.	G	.	.	PASS	END=73613048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:59
chr2	73613049	.	A	.	.	PASS	END=73613050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:59
chr2	73613051	.	G	.	.	PASS	END=73613054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:59
chr2	73613055	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:71:60
chr2	73613056	.	G	.	.	PASS	END=73613070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	73613071	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:72:60
chr2	73613072	.	G	.	.	PASS	END=73613078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	73613079	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:39:60
chr2	73613080	.	G	.	.	PASS	END=73613134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr2	73613135	.	G	.	.	PASS	END=73613141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	73613142	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:80:12:60
chr2	73613143	.	G	.	.	PASS	END=73613167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	73613168	.	T	.	.	PASS	END=73613282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	73613283	.	A	.	.	PASS	END=73613317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	73613318	.	A	.	.	PASS	END=73613327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:87:60
chr2	73613328	.	G	.	.	PASS	END=73613340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	73613341	.	G	A	707.74	PASS	BaseQRankSum=0.791;DP=49;Dels=0.00;FS=3.830;HRun=0;HaplotypeScore=15.1507;MQ=60;MQ0=0;MQRankSum=0.851;QD=14.44;ReadPosRankSum=1.272;SB=-57.57	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:23,26:49:99:738,0,625:60:99:0.531
chr2	73613342	.	T	.	.	PASS	END=73613343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:60
chr2	73613344	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:63:60
chr2	73613345	.	G	.	.	PASS	END=73613349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr2	73613350	.	C	.	.	PASS	END=73613358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr2	73613359	.	T	.	.	PASS	END=73613360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:48:60
chr2	73613361	.	G	.	.	PASS	END=73613365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	73613366	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:39:60
chr2	73613367	.	G	.	.	PASS	END=73613371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr2	73635699	.	A	.	.	PASS	END=73635732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	73635733	.	C	.	.	PASS	END=73635782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	73635783	.	A	.	.	PASS	END=73635807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	73635808	.	C	.	.	PASS	END=73635847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	73635848	.	A	.	.	PASS	END=73635865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr2	73635866	.	G	.	.	PASS	END=73635868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	73635869	.	T	.	.	PASS	END=73635873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr2	73635874	.	A	.	.	PASS	END=73635878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	73635879	.	T	.	.	PASS	END=73635883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr2	73635884	.	T	.	.	PASS	END=73635891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	73635892	.	T	.	.	PASS	END=73635895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	73635896	.	T	.	.	LowGQX	END=73635897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr2	73635898	.	A	.	.	PASS	END=73635908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	73635909	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	73635910	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr2	73635911	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:2:60
chr2	73635912	.	A	.	.	LowGQX	END=73635917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	73635918	.	A	.	.	LowGQX	END=73635926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	73646200	.	T	.	.	PASS	END=73646224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	73646225	.	C	.	.	PASS	END=73646297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr2	73646298	.	A	.	.	PASS	END=73646448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr2	73646449	.	A	.	.	PASS	END=73646472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	73646473	.	G	.	.	PASS	END=73646487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	73646488	.	T	.	.	PASS	END=73646497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	73649934	.	A	.	.	PASS	END=73649983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	73649984	.	G	.	.	PASS	END=73650050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	73650051	.	T	.	.	PASS	END=73650114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	73650115	.	A	.	.	PASS	END=73650121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	73650122	.	T	A	1153.79	PASS	BaseQRankSum=0.637;DP=79;Dels=0.00;FS=14.687;HRun=1;HaplotypeScore=4.7873;MQ=60;MQ0=0;MQRankSum=1.505;QD=14.60;ReadPosRankSum=-1.574;SB=-382.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,44:79:99:1184,0,996:60:99:0.557
chr2	73650123	.	G	.	.	PASS	END=73650153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	73651507	.	T	.	.	LowGQX	END=73651511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	73651512	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	73651513	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	73651514	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	73651515	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	73651516	.	T	.	.	PASS	END=73651517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	73651518	.	A	.	.	LowGQX	END=73651525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	73651526	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	73651527	.	T	.	.	LowGQX	END=73651532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	73651533	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	73651534	.	T	.	.	LowGQX	END=73651536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	73651537	.	T	.	.	PASS	END=73651542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	73651543	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr2	73651544	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:0:60
chr2	73651545	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:13:33:60
chr2	73651546	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:24:60
chr2	73651547	.	T	.	.	PASS	END=73651552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	73651553	.	T	.	.	PASS	END=73651554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr2	73651555	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:1:60
chr2	73651556	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr2	73651557	.	G	.	.	PASS	END=73651558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	73651559	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	73651560	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	73651561	.	A	.	.	LowGQX	END=73651562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr2	73651563	.	T	.	.	PASS	END=73651565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	73651566	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr2	73651567	.	T	.	.	PASS	END=73651571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	73651572	.	A	.	.	PASS	END=73651576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:42:60
chr2	73651577	.	G	.	.	PASS	END=73651580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	73651581	.	A	.	.	PASS	END=73651607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:69:60
chr2	73651608	.	A	.	.	PASS	END=73651634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:90:60
chr2	73651635	.	C	.	.	PASS	END=73651665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	73651666	.	T	.	.	PASS	END=73651673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	73651674	.	G	.	.	PASS	END=73651684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	73651685	.	C	.	.	PASS	END=73651690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	73651691	.	C	.	.	PASS	END=73651707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	73651708	.	T	.	.	PASS	END=73651839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr2	73651840	.	G	.	.	PASS	END=73651856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	73651857	.	A	.	.	PASS	END=73651919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	73651920	.	C	.	.	PASS	END=73651945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	73651946	.	A	.	.	PASS	END=73651966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	73651967	.	C	T	1375.53	PASS	BaseQRankSum=0.566;DP=78;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=5.7343;MQ=60;MQ0=0;MQRankSum=-0.394;QD=17.64;ReadPosRankSum=-1.345;SB=-33.31	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,45:78:99:1406,0,962:60:99:0.577
chr2	73651968	.	G	.	.	PASS	END=73651989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	73651990	.	A	.	.	PASS	END=73652009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr2	73652010	.	A	.	.	PASS	END=73652012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr2	73652013	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:33:60
chr2	73652014	.	A	.	.	PASS	END=73652030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr2	73652031	.	G	.	.	PASS	END=73652040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr2	73652041	.	T	.	.	PASS	END=73652043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	73652044	.	T	.	.	PASS	END=73652064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	73652065	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:12:60
chr2	73652066	.	A	.	.	PASS	END=73652069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	73652070	.	T	.	.	PASS	END=73652081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	73653530	.	A	.	.	PASS	END=73653545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	73653546	.	A	.	.	PASS	END=73653698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	73653699	.	G	.	.	PASS	END=73653732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	73659275	.	G	.	.	LowGQX	END=73659281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	73659282	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr2	73659283	.	T	.	.	LowGQX	END=73659285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	73659286	.	G	.	.	LowGQX	END=73659287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	73659288	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	73659289	.	T	.	.	LowGQX	END=73659313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	73659314	.	G	.	.	LowGQX	END=73659348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73659349	.	C	.	.	LowGQX	END=73659392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	73659393	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	73659394	.	A	.	.	LowGQX	END=73659447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	73659448	.	C	A	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.736;QD=1.05;ReadPosRankSum=0.736;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.29:30,0,62:60:3:0.333
chr2	73659449	.	C	.	.	LowGQX	END=73659468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	73659469	.	A	.	.	LowGQX	END=73659470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr2	73675039	.	A	.	.	PASS	END=73675044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	73675045	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	73675046	.	A	.	.	PASS	END=73675063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	73675064	.	C	.	.	PASS	END=73675095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	73675096	.	C	.	.	PASS	END=73675116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr2	73675117	.	A	.	.	PASS	END=73675144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	73675145	.	C	.	.	PASS	END=73675149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	73675150	.	C	.	.	PASS	END=73675181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	73675182	.	C	.	.	PASS	END=73675206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	73675207	.	T	.	.	PASS	END=73675227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr2	73675227	.	T	TCTC	5078.15	PASS	BaseQRankSum=-0.536;DP=219;FS=4.467;HRun=0;HaplotypeScore=395.0651;MQ=60;MQ0=0;MQRankSum=1.524;QD=23.19;ReadPosRankSum=1.189;SB=-1165.52	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:122,92:218:99:5078,0,6086:60:99:0.430
chr2	73675228	.	C	.	.	PASS	END=73675245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr2	73675246	.	G	.	.	PASS	END=73675375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:303:99:60
chr2	73675376	.	C	.	.	PASS	END=73675405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:60
chr2	73675406	.	C	.	.	PASS	END=73675527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:59
chr2	73675528	.	G	.	.	PASS	END=73675637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:258:99:59
chr2	73675638	.	C	.	.	PASS	END=73675653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:344:99:60
chr2	73675654	.	C	.	.	PASS	END=73675668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:438:99:60
chr2	73675669	.	T	G	15578.99	PASS	BaseQRankSum=1.719;DP=519;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=85.3275;MQ=60;MQ0=0;MQRankSum=-1.398;QD=30.02;ReadPosRankSum=1.538;SB=-6560.79	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,518:519:99:15579,1189,0:60:99:0.998
chr2	73675670	.	A	.	.	PASS	END=73675748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:501:99:59
chr2	73675749	.	T	.	.	PASS	END=73675798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:541:99:59
chr2	73675799	.	C	.	.	PASS	END=73675843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:472:99:59
chr2	73675844	.	C	T	5377.37	PASS	BaseQRankSum=0.707;DP=515;Dels=0.00;FS=9.708;HRun=2;HaplotypeScore=269.8012;MQ=60;MQ0=0;MQRankSum=-0.083;QD=10.44;ReadPosRankSum=-0.875;SB=-2827.06	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:242,246:514:99:5377,0,5702:60:99:0.504
chr2	73675845	.	G	.	.	PASS	END=73676073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:466:99:59
chr2	73676074	.	C	.	.	PASS	END=73676099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:353:99:59
chr2	73676100	.	A	.	.	PASS	END=73676226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:305:99:60
chr2	73676227	.	C	.	.	PASS	END=73676286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:275:99:60
chr2	73676287	.	G	.	.	PASS	END=73676463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:294:99:59
chr2	73676464	.	T	.	.	PASS	END=73676643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:360:99:60
chr2	73676644	.	C	.	.	PASS	END=73676861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:291:99:58
chr2	73676862	.	C	.	.	PASS	END=73676995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:340:99:59
chr2	73676996	.	T	.	.	PASS	END=73677100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:292:99:59
chr2	73677101	.	A	.	.	PASS	END=73677138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:271:99:60
chr2	73677139	.	C	.	.	PASS	END=73677271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:356:99:60
chr2	73677272	.	G	.	.	PASS	END=73677453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:367:99:57
chr2	73677454	.	T	.	.	PASS	END=73677508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:301:99:56
chr2	73677509	.	C	.	.	PASS	END=73677519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:295:99:58
chr2	73677520	.	A	.	.	PASS	END=73677580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:334:99:58
chr2	73677581	.	G	.	.	PASS	END=73677636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:387:99:57
chr2	73677637	.	T	.	545.82	PASS	DP=395;MQ=57;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:298:395:99:57:99
chr2	73677638	.	T	.	.	PASS	END=73677677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:390:99:55
chr2	73677678	.	G	.	151.76	PASS	DP=418;MQ=55;MQ0=7	GT:AD:DP:GQ:MQ:GQX	0/0:289:417:99:55:99
chr2	73677679	.	T	.	.	PASS	END=73677793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:346:99:55
chr2	73677794	.	T	.	.	PASS	END=73677813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:294:99:57
chr2	73677814	.	A	.	.	PASS	END=73677832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:58
chr2	73677833	.	A	G	1771.95	PASS	BaseQRankSum=-3.033;DP=251;Dels=0.00;FS=13.094;HRun=0;HaplotypeScore=43.7058;MQ=58;MQ0=1;MQRankSum=0.160;QD=7.06;ReadPosRankSum=1.271;SB=-760.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:141,101:251:99:1802,0,3466:58:99:0.417
chr2	73677834	.	C	.	.	PASS	END=73677874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:56
chr2	73677875	.	C	.	228.32	PASS	DP=251;MQ=56;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:192:251:99:56:99
chr2	73677876	.	G	.	.	PASS	END=73677897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:56
chr2	73677898	.	G	C	2486.65	PASS	BaseQRankSum=1.092;DP=239;Dels=0.00;FS=4.062;HRun=0;HaplotypeScore=137.0929;MQ=56;MQ0=1;MQRankSum=-0.730;QD=10.40;ReadPosRankSum=1.077;SB=-1231.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:96,131:239:99:2517,0,1630:56:99:0.577
chr2	73677899	.	T	.	.	PASS	END=73677903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:55
chr2	73677904	.	G	.	201.28	PASS	DP=242;MQ=55;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:179:242:99:55:99
chr2	73677905	.	G	.	.	PASS	END=73677948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:55
chr2	73677949	.	C	.	.	PASS	END=73677963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:282:99:56
chr2	73677964	.	G	T	367.35	LowQD	BaseQRankSum=-3.143;DP=285;Dels=0.00;FS=10.623;HRun=3;HaplotypeScore=124.7648;MQ=56;MQ0=2;MQRankSum=2.754;QD=1.29;ReadPosRankSum=-3.004;SB=-93.64	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:217,67:285:99:397,0,5099:56:99:0.236
chr2	73677965	.	T	.	.	PASS	END=73678013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:288:99:56
chr2	73678014	.	G	.	243.23	PASS	DP=298;MQ=58;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:226:298:99:58:99
chr2	73678015	.	A	.	.	PASS	END=73678050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:58
chr2	73678051	.	T	.	236.16	PASS	DP=236;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:166:236:99:59:99
chr2	73678052	.	T	.	.	PASS	END=73678072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:58
chr2	73678073	.	C	.	291.61	PASS	DP=220;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:174:220:99:58:99
chr2	73678074	.	C	.	.	PASS	END=73678129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:59
chr2	73678130	.	G	T	299.25	LowQD;SB	BaseQRankSum=-7.117;DP=253;Dels=0.00;FS=34.720;HRun=0;HaplotypeScore=207.0292;MQ=59;MQ0=0;MQRankSum=0.210;QD=1.18;ReadPosRankSum=1.585;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:166,82:253:99:329,0,3621:59:99:0.331
chr2	73678131	.	G	.	327.75	PASS	DP=253;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:166:253:99:59:99
chr2	73678132	.	G	.	.	PASS	END=73678148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:265:99:59
chr2	73678149	.	T	.	16.35	LowGQX	DP=255;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:194:255:0.18:59:0
chr2	73678150	.	C	.	.	PASS	END=73678179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:59
chr2	73678180	.	T	.	.	PASS	END=73678237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr2	73678238	.	A	.	.	PASS	END=73678283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:59
chr2	73678284	.	C	.	.	PASS	END=73678405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:59
chr2	73678406	.	C	.	.	PASS	END=73678462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:59
chr2	73678463	.	T	.	.	PASS	END=73678547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr2	73678548	.	C	.	.	PASS	END=73678593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr2	73678594	.	C	.	.	PASS	END=73678684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:272:99:59
chr2	73678685	.	G	.	.	PASS	END=73678727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:342:99:60
chr2	73678728	.	C	.	336.41	PASS	DP=340;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:271:340:99:60:99
chr2	73678729	.	C	.	.	PASS	END=73678797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:299:99:60
chr2	73678798	.	G	.	.	PASS	END=73678875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:356:99:60
chr2	73678876	.	T	.	.	PASS	END=73678996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:407:99:59
chr2	73678997	.	G	.	495.93	PASS	DP=444;MQ=59;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:333:444:99:59:99
chr2	73678998	.	G	.	.	PASS	END=73679045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:367:99:59
chr2	73679046	.	G	.	.	PASS	END=73679078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:60
chr2	73679079	.	A	.	.	PASS	END=73679094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr2	73679095	.	T	.	.	PASS	END=73679135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr2	73679136	.	T	.	.	PASS	END=73679141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:252:99:60
chr2	73679142	.	A	.	382.08	PASS	DP=256;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:202:256:99:60:99
chr2	73679143	.	T	.	.	PASS	END=73679158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:59
chr2	73679159	.	A	.	.	PASS	END=73679279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:279:99:59
chr2	73679280	.	A	G	3507.07	PASS	BaseQRankSum=1.590;DP=333;Dels=0.00;FS=4.024;HRun=0;HaplotypeScore=280.8984;MQ=60;MQ0=0;MQRankSum=-1.332;QD=10.53;ReadPosRankSum=-0.515;SB=-1570.21	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:141,159:333:99:3507,0,2775:60:99:0.530
chr2	73679281	.	T	.	.	PASS	END=73679430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:336:99:60
chr2	73679431	.	A	.	.	PASS	END=73679493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:253:99:60
chr2	73679494	.	C	.	.	PASS	END=73679560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr2	73679561	.	T	.	.	PASS	END=73679595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:317:99:60
chr2	73679596	.	C	.	.	PASS	END=73679756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:396:99:60
chr2	73679757	.	G	.	.	PASS	END=73679807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:298:99:60
chr2	73679808	.	G	.	.	PASS	END=73679865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:261:99:60
chr2	73679866	.	T	C	3799.92	PASS	BaseQRankSum=-2.411;DP=281;Dels=0.00;FS=3.436;HRun=0;HaplotypeScore=15.4238;MQ=60;MQ0=0;MQRankSum=0.686;QD=13.52;ReadPosRankSum=-1.476;SB=-1857.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:139,140:281:99:3800,0,4115:60:99:0.502
chr2	73679867	.	T	.	.	PASS	END=73679925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:274:99:60
chr2	73679926	.	T	.	.	PASS	END=73679989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:332:99:60
chr2	73679990	.	T	A	4609.17	PASS	BaseQRankSum=2.661;DP=338;Dels=0.00;FS=2.488;HRun=0;HaplotypeScore=29.4395;MQ=60;MQ0=0;MQRankSum=-1.790;QD=13.64;ReadPosRankSum=-1.001;SB=-2186.57	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:152,183:338:99:4609,0,4045:60:99:0.546
chr2	73679991	.	C	.	.	PASS	END=73680033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:261:99:60
chr2	73680034	.	C	.	.	PASS	END=73680061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr2	73680062	.	A	.	.	PASS	END=73680205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr2	73680206	.	T	.	.	PASS	END=73680434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:60
chr2	73680435	.	G	.	.	PASS	END=73680507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:249:99:60
chr2	73680508	.	G	C	3546.01	PASS	BaseQRankSum=3.156;DP=248;Dels=0.00;FS=6.653;HRun=3;HaplotypeScore=29.5626;MQ=60;MQ0=0;MQRankSum=0.156;QD=14.30;ReadPosRankSum=-0.638;SB=-717.06	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:121,127:248:99:3546,0,3216:60:99:0.512
chr2	73680509	.	T	.	.	PASS	END=73680642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr2	73680643	.	G	.	.	PASS	END=73680729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:268:99:60
chr2	73680730	.	T	.	.	PASS	END=73680904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:326:99:60
chr2	73680905	.	T	.	.	PASS	END=73681010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:385:99:60
chr2	73681011	.	A	.	.	PASS	END=73681039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:291:99:60
chr2	73681040	.	A	.	.	PASS	END=73681055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr2	73681056	.	A	.	.	PASS	END=73681069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr2	73681070	.	T	.	.	PASS	END=73681078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	73681079	.	T	.	.	PASS	END=73681086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	73681087	.	C	.	.	PASS	END=73681101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	73681102	.	T	.	.	PASS	END=73681136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	73681137	.	C	.	.	PASS	END=73681157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr2	73681158	.	A	.	.	PASS	END=73681175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	73681176	.	A	.	.	PASS	END=73681182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr2	73681183	.	T	.	.	PASS	END=73681193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr2	73681194	.	G	.	.	PASS	END=73681203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr2	73681204	.	A	.	.	PASS	END=73681207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr2	73681208	.	T	.	.	PASS	END=73681212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr2	73681213	.	G	.	.	PASS	END=73681219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	73681220	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr2	73681221	.	A	.	.	PASS	END=73681225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	73681226	.	A	.	.	PASS	END=73681227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	73681228	.	A	.	.	PASS	END=73681229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	73681230	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:60
chr2	73681231	.	T	.	.	PASS	END=73681234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	73681235	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:6:60
chr2	73681236	.	A	.	.	PASS	END=73681237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	73681238	.	T	.	.	PASS	END=73681239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	73681240	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:21:60
chr2	73681241	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	73681242	.	T	.	.	LowGQX	END=73681243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr2	73681244	.	T	.	.	PASS	END=73681245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	73682238	.	C	.	.	PASS	END=73682257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	73682258	.	G	.	.	PASS	END=73682266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr2	73682267	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:48:60
chr2	73682268	.	A	.	.	PASS	END=73682318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	73682319	.	A	.	.	PASS	END=73682408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr2	73682409	.	C	.	.	PASS	END=73682417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	73682418	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:39:60
chr2	73682419	.	C	.	.	PASS	END=73682431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr2	73682432	.	A	.	.	PASS	END=73682471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	73682472	.	A	.	.	PASS	END=73682473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr2	73689820	.	T	.	.	LowGQX	END=73689835	GT	./.
chr2	73689836	.	C	.	.	LowGQX	END=73689853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr2	73689854	.	A	.	.	LowGQX	.	GT	./.
chr2	73689855	.	C	.	.	LowGQX	END=73689972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr2	73689973	.	A	G	14.89	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=43;MQ0=0;QD=7.45;SB=-25.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:43:3:1.000
chr2	73689974	.	A	.	.	LowGQX	END=73689979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:43
chr2	73716710	.	A	.	.	PASS	END=73716729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr2	73716730	.	A	.	.	PASS	END=73716753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	73716754	.	C	.	.	PASS	END=73716770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	73716771	.	G	.	.	PASS	END=73716791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	73716792	.	A	.	.	PASS	END=73716806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	73716807	.	G	.	.	PASS	END=73716819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr2	73716820	.	T	.	.	PASS	END=73716862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr2	73716863	.	G	.	.	PASS	END=73716938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:288:99:60
chr2	73716939	.	A	.	.	PASS	END=73717105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:344:99:60
chr2	73717106	.	G	.	.	PASS	END=73717143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:266:99:60
chr2	73717144	.	T	.	.	PASS	END=73717170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:263:99:60
chr2	73717171	.	T	.	.	PASS	END=73717298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:303:99:60
chr2	73717299	.	A	.	.	PASS	END=73717331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:229:99:60
chr2	73717332	.	T	.	.	PASS	END=73717459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr2	73717460	.	A	.	.	PASS	END=73717516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	73717517	.	C	.	.	PASS	END=73717555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr2	73717556	.	C	.	.	PASS	END=73717566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr2	73717567	.	G	T	3397.57	PASS	BaseQRankSum=2.218;DP=257;Dels=0.00;FS=2.944;HRun=0;HaplotypeScore=14.2967;MQ=60;MQ0=0;MQRankSum=-0.815;QD=13.22;ReadPosRankSum=-0.804;SB=-1447.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:133,124:257:99:3398,0,3331:60:99:0.482
chr2	73717568	.	G	.	.	PASS	END=73717643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr2	73717644	.	C	.	.	PASS	END=73717655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:321:99:60
chr2	73717656	.	A	G	4202.38	PASS	BaseQRankSum=1.037;DP=330;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=19.9908;MQ=60;MQ0=0;MQRankSum=-1.211;QD=12.73;ReadPosRankSum=0.891;SB=-1429.03	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:176,153:330:99:4202,0,4767:60:99:0.465
chr2	73717657	.	C	.	.	PASS	END=73717743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:320:99:58
chr2	73717744	.	G	A	79.18	LowQD;SB	BaseQRankSum=-1.144;DP=328;Dels=0.00;FS=19.049;HRun=1;HaplotypeScore=57.0532;MQ=58;MQ0=3;MQRankSum=-0.970;QD=0.24;ReadPosRankSum=-5.258;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:271,45:328:99:109,0,4616:58:79:0.142
chr2	73717745	.	C	.	.	PASS	END=73717755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:287:99:58
chr2	73717756	.	A	.	330.87	PASS	DP=279;MQ=59;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:217:279:99:59:99
chr2	73717757	.	A	.	.	PASS	END=73717768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:59
chr2	73717769	.	C	.	.	PASS	END=73717829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	73717830	.	C	.	.	PASS	END=73717836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:58
chr2	73717837	.	C	.	306.82	PASS	DP=233;MQ=58;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:158:233:99:58:99
chr2	73717838	.	C	.	.	PASS	END=73717964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:58
chr2	73717965	.	T	.	.	PASS	END=73717993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr2	73717994	.	C	.	.	PASS	END=73718031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:60
chr2	73718032	.	A	.	.	PASS	END=73718154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:274:99:60
chr2	73718155	.	A	.	.	PASS	END=73718315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr2	73718316	.	C	.	.	PASS	END=73718437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr2	73718438	.	G	.	.	PASS	END=73718496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	73718497	.	T	.	.	PASS	END=73718507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	73718508	.	A	.	.	PASS	END=73718548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	73718549	.	T	.	.	PASS	END=73718583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	73718584	.	A	.	.	PASS	END=73718603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	73718604	.	G	.	.	PASS	END=73718628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr2	73718629	.	A	.	.	PASS	END=73718630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:90:60
chr2	73718631	.	T	.	.	PASS	END=73718632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:54:60
chr2	73718633	.	T	.	.	PASS	END=73718638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr2	73718639	.	T	.	.	PASS	END=73718649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr2	73718650	.	A	.	.	PASS	END=73718661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr2	73718662	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:18:60
chr2	73718663	.	T	.	.	PASS	END=73718674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	73718675	.	G	.	.	PASS	END=73718676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	73746851	.	C	.	.	PASS	END=73746864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	73746865	.	G	.	.	PASS	END=73746914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	73746915	.	A	.	.	PASS	END=73746922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	73746923	.	C	T	1359.35	PASS	BaseQRankSum=3.077;DP=81;Dels=0.00;FS=2.864;HRun=0;HaplotypeScore=5.6815;MQ=60;MQ0=0;MQRankSum=0.407;QD=16.78;ReadPosRankSum=0.426;SB=-303.59	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,47:81:99:1389,0,688:60:99:0.580
chr2	73746924	.	C	.	.	PASS	END=73746970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	73746971	.	G	.	.	PASS	END=73746999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	73747000	.	T	.	.	PASS	END=73747090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	73747091	.	G	.	.	PASS	END=73747117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	73747118	.	G	.	.	PASS	END=73747150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	73747151	.	A	.	.	PASS	END=73747179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	73747180	.	A	.	.	PASS	END=73747194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:92:60
chr2	73761900	.	T	.	.	PASS	END=73761939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr2	73761940	.	T	.	.	PASS	END=73761989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	73761990	.	C	.	.	PASS	END=73762047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	73762048	.	A	.	.	PASS	END=73762095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	73762096	.	C	.	.	PASS	END=73762097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	73762098	.	A	.	.	PASS	END=73762127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	73777343	.	C	.	.	PASS	END=73777369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	73777370	.	T	.	.	PASS	END=73777517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	73777518	.	G	.	.	PASS	END=73777582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	73777583	.	T	.	.	PASS	END=73777597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	73777598	.	T	.	.	PASS	END=73777615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	73784296	.	T	.	.	PASS	END=73784354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	73784355	.	G	.	.	PASS	END=73784442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	73784443	.	A	.	.	PASS	END=73784510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	73784511	.	T	.	.	PASS	END=73784532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	73786048	.	T	.	.	PASS	END=73786057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr2	73786058	.	C	.	.	PASS	END=73786065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	73786066	.	T	.	.	PASS	END=73786072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr2	73786073	.	A	.	.	PASS	END=73786089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:92:60
chr2	73786090	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:67:60
chr2	73786091	.	T	.	.	PASS	END=73786119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:79:60
chr2	73786120	.	C	.	.	PASS	END=73786143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	73786144	.	A	.	.	PASS	END=73786223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	73786224	.	G	.	.	PASS	END=73786254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:90:60
chr2	73786255	.	A	.	.	PASS	END=73786281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr2	73786282	.	G	.	.	PASS	END=73786294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr2	73786295	.	T	.	.	PASS	END=73786306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr2	73786307	.	T	.	.	PASS	END=73786310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	73786311	.	T	.	.	PASS	END=73786320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	73799338	.	C	.	.	PASS	END=73799344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	73799345	.	C	.	.	PASS	END=73799364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	73799365	.	A	.	.	PASS	END=73799367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	73799368	.	A	.	.	PASS	END=73799370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	73799371	.	T	.	.	PASS	END=73799378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	73799379	.	T	.	.	PASS	END=73799380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	73799381	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	73799382	.	T	.	.	PASS	END=73799415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	73799416	.	A	.	.	PASS	END=73799418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	73799419	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:12:60
chr2	73799420	.	T	.	.	PASS	END=73799424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	73799425	.	G	.	.	PASS	END=73799429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	73799430	.	G	.	.	PASS	END=73799446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	73799447	.	G	.	.	PASS	END=73799460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:96:60
chr2	73799461	.	A	.	.	PASS	END=73799462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	73799463	.	C	.	.	PASS	END=73799472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	73799473	.	T	.	.	PASS	END=73799528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	73799529	.	C	.	.	PASS	END=73799573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	73799574	.	G	.	.	PASS	END=73799635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	73799636	.	A	.	.	PASS	END=73799772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr2	73799773	.	A	.	.	PASS	END=73799846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr2	73799847	.	C	.	.	PASS	END=73799961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr2	73799962	.	A	.	.	PASS	END=73800079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:60
chr2	73800080	.	T	.	.	PASS	END=73800137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:276:99:60
chr2	73800138	.	G	.	.	PASS	END=73800228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr2	73800229	.	A	.	.	PASS	END=73800252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	73800253	.	C	.	.	PASS	END=73800300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	73800301	.	T	.	.	PASS	END=73800346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	73800347	.	T	.	.	PASS	END=73800403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	73800404	.	C	.	.	PASS	END=73800496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	73800497	.	G	.	.	PASS	END=73800528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	73800529	.	A	.	.	PASS	END=73800591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	73800592	.	C	.	.	PASS	END=73800617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	73826477	.	C	.	.	PASS	END=73826497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	73826498	.	A	.	.	PASS	END=73826575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	73826576	.	A	.	.	PASS	END=73826623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	73826624	.	A	.	.	PASS	END=73826631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	73826632	.	C	.	.	PASS	END=73826649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr2	73826650	.	T	.	.	PASS	END=73826655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr2	73826656	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:57:60
chr2	73826657	.	T	.	.	PASS	END=73826699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	73827754	.	C	.	.	PASS	END=73827762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr2	73827763	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:15:60
chr2	73827764	.	T	.	.	PASS	END=73827773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr2	73827774	.	T	.	.	PASS	END=73827782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr2	73827783	.	C	.	.	PASS	END=73827784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	73827785	.	C	.	.	PASS	END=73827801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:60
chr2	73827802	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:41:27:60
chr2	73827803	.	A	.	.	PASS	END=73827815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr2	73827816	.	A	.	.	PASS	END=73827874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:90:60
chr2	73827875	.	T	.	.	PASS	END=73827903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	73827904	.	G	.	.	PASS	END=73828000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	73828001	.	C	.	.	PASS	END=73828049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	73828050	.	A	.	.	PASS	END=73828059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	73828271	.	G	.	.	PASS	END=73828273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	73828274	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:75:60
chr2	73828275	.	T	.	.	PASS	END=73828297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr2	73828298	.	C	.	.	PASS	END=73828309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	73828310	.	T	C	487.52	PASS	BaseQRankSum=-0.213;DP=58;Dels=0.00;FS=2.400;HRun=1;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=0.576;QD=8.41;ReadPosRankSum=0.655;SB=-193.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,24:58:99:518,0,832:60:99:0.414
chr2	73828311	.	G	.	.	PASS	END=73828355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	73828356	.	G	.	.	PASS	END=73828448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	73828449	.	A	.	.	PASS	END=73828485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:87:60
chr2	73828486	.	G	.	.	PASS	END=73828495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr2	73828496	.	A	.	.	PASS	END=73828497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr2	73828498	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:39:60
chr2	73828499	.	T	.	.	PASS	END=73828505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr2	73828506	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:30:60
chr2	73828507	.	C	.	.	PASS	END=73828532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	73828533	.	A	.	.	PASS	END=73828537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	73828538	.	G	A	272.80	PASS	BaseQRankSum=0.927;DP=24;Dels=0.00;FS=1.935;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-0.348;QD=11.37;ReadPosRankSum=0.232;SB=-49.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:13,11:24:99:303,0,306:60:99:0.458
chr2	73828539	.	G	.	.	PASS	END=73828546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	73828547	.	T	.	.	PASS	END=73828565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	73828566	.	G	.	.	PASS	END=73828588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	73828589	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	73828590	.	T	.	.	PASS	END=73828592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	73828593	.	T	.	.	LowGQX	END=73828599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	73828600	.	A	.	.	LowGQX	END=73828609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	73828610	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr2	73828611	.	G	.	.	LowGQX	END=73828614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	73829261	.	A	.	.	PASS	END=73829291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	73829292	.	C	.	.	PASS	END=73829342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	73829343	.	T	.	.	PASS	END=73829371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	73829372	.	C	T	753.76	PASS	BaseQRankSum=-1.193;DP=102;Dels=0.00;FS=1.831;HRun=1;HaplotypeScore=8.6268;MQ=60;MQ0=0;MQRankSum=-0.289;QD=7.39;ReadPosRankSum=-1.737;SB=-468.53	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:60,42:102:99:784,0,1301:60:99:0.412
chr2	73829373	.	T	.	.	PASS	END=73829468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	73829469	.	A	.	.	PASS	END=73829502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	73829503	.	C	.	.	PASS	END=73829517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr2	73829518	.	C	.	.	PASS	END=73829544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	73829545	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:66:60
chr2	73829546	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:99:60
chr2	73830317	.	C	.	.	PASS	END=73830368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	73830369	.	C	.	.	PASS	END=73830438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	73830439	.	C	.	.	PASS	END=73830463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	73830464	.	G	.	.	PASS	END=73830469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	73830470	.	A	.	.	PASS	END=73830483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr2	73835551	.	C	.	.	PASS	END=73835574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr2	73835575	.	T	.	.	PASS	END=73835676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	73835677	.	G	.	.	PASS	END=73835702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr2	73835703	.	T	.	.	PASS	END=73835724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr2	73835725	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:87:60
chr2	73835726	.	G	.	.	PASS	END=73835730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	73835731	.	G	.	.	PASS	END=73835738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr2	73835739	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr2	73835740	.	T	.	.	PASS	END=73835745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	73835746	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	73835747	.	C	.	.	PASS	END=73835748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	73835749	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	73835750	.	A	.	.	PASS	END=73835752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	73836637	.	A	.	.	PASS	END=73836675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	73836676	.	C	.	.	PASS	END=73836769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	73836770	.	T	.	.	PASS	END=73836790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	73868070	.	G	.	.	LowGQX	END=73868138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73868139	.	C	.	.	LowGQX	END=73868757	GT	./.
chr2	73899962	.	A	.	.	LowGQX	END=73899969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73899970	.	T	.	.	LowGQX	.	GT	./.
chr2	73899971	.	C	.	.	LowGQX	END=73899983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73899984	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	73899985	.	G	.	.	LowGQX	END=73899993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73899994	.	G	.	.	LowGQX	.	GT	./.
chr2	73899995	.	C	.	.	LowGQX	END=73900016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73900017	.	T	.	.	LowGQX	.	GT	./.
chr2	73900018	.	C	.	.	LowGQX	END=73900024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73900025	.	T	.	.	LowGQX	END=73900089	GT	./.
chr2	73900090	.	G	.	.	LowGQX	END=73900177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73900940	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:21:59
chr2	73900941	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:42:59
chr2	73900942	.	A	.	.	LowGQX	END=73900943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:21:60
chr2	73900944	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:1:60
chr2	73900945	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:30:60
chr2	73900946	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:27:60
chr2	73900947	.	T	.	.	PASS	END=73900949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:30:60
chr2	73900950	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:42:60
chr2	73900951	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:30:60
chr2	73900952	.	T	.	.	PASS	END=73900955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:45:60
chr2	73900956	.	A	.	.	PASS	END=73900959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:39:60
chr2	73900960	.	A	.	.	PASS	END=73900966;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:42:60
chr2	73900967	.	T	.	.	PASS	END=73900968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:57:60
chr2	73900969	.	C	.	75.10	PASS	DP=34;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:26:34:45.11:60:45
chr2	73900970	.	A	.	.	PASS	END=73900980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:54:60
chr2	73900981	.	T	.	.	PASS	END=73900985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:63:60
chr2	73900986	.	A	.	.	PASS	END=73900990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:48:60
chr2	73900991	.	A	.	.	PASS	END=73901000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:60:60
chr2	73901001	.	T	.	.	PASS	END=73901005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:72:60
chr2	73901006	.	T	.	.	PASS	END=73901038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr2	73901039	.	T	.	.	PASS	END=73901064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	73901065	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:48:60
chr2	73901066	.	G	.	.	PASS	END=73901092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr2	73901093	.	C	.	.	PASS	END=73901111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr2	73901112	.	T	.	.	PASS	END=73901121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr2	73901122	.	A	.	.	PASS	END=73901123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	73901951	.	C	.	.	PASS	END=73901988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	73901989	.	A	.	.	PASS	END=73902050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	73912088	.	G	.	.	LowGQX	END=73912217	GT	./.
chr2	73927748	.	A	.	.	LowGQX	END=73928432	GT	./.
chr2	73957064	.	G	.	.	LowGQX	END=73957217	GT	./.
chr2	73957665	.	C	.	.	LowGQX	END=73957865	GT	./.
chr2	73959288	.	A	.	.	LowGQX	END=73959414	GT	./.
chr2	73959659	.	G	.	.	LowGQX	END=73959661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73959662	.	A	.	.	LowGQX	.	GT	./.
chr2	73959663	.	C	.	.	LowGQX	END=73959678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73959679	.	T	.	.	LowGQX	.	GT	./.
chr2	73959680	.	A	.	.	LowGQX	END=73959683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73959684	.	A	.	.	LowGQX	.	GT	./.
chr2	73959685	.	A	.	.	LowGQX	END=73959699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73959700	.	G	.	.	LowGQX	.	GT	./.
chr2	73959701	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73959702	.	G	.	.	LowGQX	.	GT	./.
chr2	73959703	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73959704	.	C	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	73959705	.	A	.	.	LowGQX	END=73959709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73959710	.	C	.	.	LowGQX	.	GT	./.
chr2	73959711	.	C	.	.	LowGQX	END=73959712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73959713	.	G	.	.	LowGQX	.	GT	./.
chr2	73959714	.	T	.	.	LowGQX	END=73959720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73959721	.	A	.	.	LowGQX	END=73959827	GT	./.
chr2	73961554	.	A	.	.	LowGQX	END=73961698	GT	./.
chr2	73989786	.	T	.	.	LowGQX	END=73989821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73989822	.	A	.	.	LowGQX	END=73989988	GT	./.
chr2	73993543	.	A	.	.	LowGQX	END=73993723	GT	./.
chr2	73993943	.	C	.	.	LowGQX	END=73994042	GT	./.
chr2	73994206	.	T	.	.	LowGQX	END=73994361	GT	./.
chr2	73995881	.	A	.	.	LowGQX	END=73996007	GT	./.
chr2	73996008	.	G	.	.	LowGQX	END=73996038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	73996039	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	73996040	.	G	.	.	LowGQX	END=73996079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	73996373	.	T	.	.	LowGQX	END=73996472	GT	./.
chr2	74000564	.	T	.	.	LowGQX	END=74000663	GT	./.
chr2	74000925	.	A	.	.	LowGQX	END=74001052	GT	./.
chr2	74002038	.	A	.	.	LowGQX	END=74002173	GT	./.
chr2	74005356	.	A	.	.	LowGQX	END=74005515	GT	./.
chr2	74006999	.	A	.	.	LowGQX	END=74007242	GT	./.
chr2	74011375	.	T	.	.	LowGQX	END=74011534	GT	./.
chr2	74035870	.	T	.	.	LowGQX	END=74036029	GT	./.
chr2	74040603	.	G	.	.	LowGQX	END=74040742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74040743	.	G	.	.	LowGQX	.	GT	./.
chr2	74040744	.	C	.	.	LowGQX	END=74040746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74040747	.	C	.	.	LowGQX	END=74041143	GT	./.
chr2	74041144	.	A	.	.	LowGQX	END=74041188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74041189	.	C	.	.	LowGQX	.	GT	./.
chr2	74041190	.	T	.	.	LowGQX	END=74041209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74041210	.	C	.	.	LowGQX	.	GT	./.
chr2	74041211	.	A	.	.	LowGQX	END=74041353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74042197	.	G	.	.	LowGQX	END=74044119	GT	./.
chr2	74057982	.	T	.	.	LowGQX	END=74058188	GT	./.
chr2	74071928	.	C	.	.	LowGQX	END=74072027	GT	./.
chr2	74072292	.	A	.	.	LowGQX	END=74072391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74074512	.	A	.	.	LowGQX	END=74074626	GT	./.
chr2	74074627	.	T	.	.	LowGQX	END=74074877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74074878	.	G	.	.	LowGQX	END=74074882	GT	./.
chr2	74076438	.	T	.	.	LowGQX	END=74076616	GT	./.
chr2	74077501	.	A	.	.	LowGQX	END=74077642	GT	./.
chr2	74082720	.	A	.	.	LowGQX	END=74082781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	74082782	.	G	.	.	LowGQX	END=74082819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr2	74086379	.	A	.	.	LowGQX	END=74086383	GT	./.
chr2	74086384	.	C	.	.	LowGQX	END=74086495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74087177	.	A	.	.	LowGQX	END=74087266	GT	./.
chr2	74087267	.	C	.	.	LowGQX	END=74087268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74087269	.	T	.	.	LowGQX	.	GT	./.
chr2	74087270	.	C	.	.	LowGQX	END=74087273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74087274	.	T	.	.	LowGQX	.	GT	./.
chr2	74087275	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74087276	.	T	.	.	LowGQX	.	GT	./.
chr2	74087277	.	G	.	.	LowGQX	END=74087280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74089309	.	C	.	.	LowGQX	END=74089408	GT	./.
chr2	74128437	.	C	.	.	LowGQX	END=74128557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74128558	.	C	.	.	LowGQX	.	GT	./.
chr2	74128559	.	C	.	.	LowGQX	END=74128572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74128573	.	T	.	.	LowGQX	.	GT	./.
chr2	74128574	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74128575	.	A	.	.	LowGQX	.	GT	./.
chr2	74128576	.	T	.	.	LowGQX	END=74128580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74128581	.	A	.	.	LowGQX	END=74128582	GT	./.
chr2	74128583	.	A	.	.	LowGQX	END=74128592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74128593	.	T	.	.	LowGQX	.	GT	./.
chr2	74128594	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74129485	.	A	.	.	LowGQX	END=74129586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	74129587	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr2	74129588	.	C	.	.	LowGQX	END=74129617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	74129750	.	G	.	.	LowGQX	END=74129855	GT	./.
chr2	74135397	.	T	.	.	LowGQX	END=74135496	GT	./.
chr2	74135798	.	A	.	.	LowGQX	END=74135831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	74135832	.	T	.	.	LowGQX	END=74135875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74135876	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	74135877	.	A	.	.	LowGQX	END=74135899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	74135900	.	A	.	.	LowGQX	END=74135909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	74135910	.	G	.	36	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.01:60:6
chr2	74135911	.	G	.	.	LowGQX	END=74135913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	74135914	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	74135915	.	G	.	.	LowGQX	END=74135918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	74135919	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	74135920	.	C	.	.	LowGQX	END=74135922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	74135923	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	74135924	.	A	.	.	LowGQX	END=74135928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	74135929	.	T	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	74135930	.	T	.	.	LowGQX	END=74135935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	74135936	.	C	.	.	LowGQX	END=74135940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	74135941	.	A	.	.	LowGQX	END=74135947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	74135948	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	74135949	.	G	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr2	74135950	.	C	.	.	LowGQX	END=74135955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	74135956	.	G	.	.	LowGQX	END=74135964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74135965	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74135966	.	C	.	.	LowGQX	END=74135977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74135978	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74136175	.	C	.	.	LowGQX	END=74136274	GT	./.
chr2	74140610	.	A	.	.	LowGQX	END=74140775	GT	./.
chr2	74141805	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	74141806	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr2	74141807	.	C	.	.	LowGQX	END=74141810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr2	74141811	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr2	74141812	.	A	.	.	LowGQX	END=74141815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr2	74141816	.	A	.	.	PASS	END=74141817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	74141818	.	A	.	.	LowGQX	END=74141819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:27:60
chr2	74141820	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr2	74141821	.	G	.	.	LowGQX	END=74141823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr2	74141824	.	C	.	.	PASS	END=74141835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	74141836	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:0:60
chr2	74141837	.	A	.	.	PASS	END=74141843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	74141844	.	G	.	.	PASS	END=74141923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:36:60
chr2	74141924	.	C	.	.	PASS	END=74141943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	74141944	.	A	.	.	PASS	END=74141950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	74141951	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	74141952	.	T	.	.	PASS	END=74141955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	74141956	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	74141957	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	74141958	.	C	.	.	LowGQX	END=74141975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	74141976	.	C	.	.	LowGQX	END=74141982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	74141983	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr2	74141984	.	A	.	.	LowGQX	END=74141989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	74141990	.	C	.	.	LowGQX	END=74141997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr2	74141998	.	G	.	.	LowGQX	END=74142000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	74143709	.	A	.	.	PASS	END=74143710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	74143711	.	G	.	.	PASS	END=74143717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	74143718	.	G	.	.	PASS	END=74143729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	74143730	.	T	.	.	PASS	END=74143740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr2	74143741	.	C	.	.	PASS	END=74143774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr2	74143775	.	C	.	.	PASS	END=74143817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:96:60
chr2	74143818	.	A	.	.	PASS	END=74143879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	74143880	.	C	.	.	PASS	END=74143894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	74146557	.	A	.	.	LowGQX	END=74146588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	74146589	.	G	.	.	LowGQX	END=74146601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr2	74146602	.	G	.	.	LowGQX	END=74146622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr2	74146623	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr2	74146624	.	C	.	.	LowGQX	END=74146663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr2	74146664	.	G	.	.	LowGQX	END=74146672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	74146673	.	C	.	.	LowGQX	END=74146680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr2	74146681	.	T	.	.	LowGQX	END=74146704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr2	74153987	.	A	.	.	PASS	END=74154019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr2	74154020	.	G	.	.	PASS	END=74154158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr2	74154159	.	T	.	.	PASS	END=74154230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	74159698	.	A	.	.	LowGQX	END=74159797	GT	./.
chr2	74165986	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:70:60
chr2	74165987	.	C	.	.	PASS	END=74166026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:93:60
chr2	74166027	.	T	.	.	PASS	END=74166118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	74166119	.	G	.	.	PASS	END=74166182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr2	74166183	.	C	.	.	PASS	END=74166196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:93:60
chr2	74166197	.	C	.	.	PASS	END=74166200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr2	74173795	.	G	.	.	PASS	END=74173837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr2	74173838	.	C	.	.	PASS	END=74173839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr2	74173840	.	C	.	.	PASS	END=74173844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	74173845	.	G	.	.	PASS	END=74173871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	74173872	.	C	.	.	PASS	END=74173879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	74173880	.	A	.	.	PASS	END=74173907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	74173908	.	G	.	.	PASS	END=74174002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	74174003	.	A	.	.	PASS	END=74174025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	74174026	.	A	.	.	PASS	END=74174030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	74174031	.	C	.	.	PASS	END=74174058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	74174059	.	C	.	.	PASS	END=74174074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr2	74174075	.	A	.	.	PASS	END=74174084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr2	74177661	.	T	.	.	PASS	END=74177684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	74177685	.	C	.	.	PASS	END=74177727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	74177728	.	A	.	.	PASS	END=74177800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	74177801	.	G	.	.	PASS	END=74177830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	74177831	.	G	.	.	PASS	END=74177846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	74177847	.	G	.	.	PASS	END=74177878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	74177879	.	C	.	.	PASS	END=74177893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr2	74177894	.	C	.	.	PASS	END=74177910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	74184201	.	T	.	.	PASS	END=74184264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	74184265	.	G	.	.	PASS	END=74184305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	74184306	.	C	.	.	PASS	END=74184321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	74184322	.	A	.	.	PASS	END=74184333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:69:60
chr2	74184334	.	A	.	.	PASS	END=74184360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr2	74184361	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:24:60
chr2	74184362	.	A	.	.	PASS	END=74184383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr2	74184384	.	G	.	.	PASS	END=74184394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	74184395	.	A	.	.	PASS	END=74184404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr2	74184405	.	C	.	.	PASS	END=74184417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr2	74184418	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:42:60
chr2	74185222	.	T	.	.	PASS	END=74185265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	74185266	.	C	.	.	PASS	END=74185383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	74185384	.	T	.	.	PASS	END=74185423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	74185786	.	A	.	.	PASS	END=74185790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	74185791	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:69:60
chr2	74185792	.	T	.	.	PASS	END=74185875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr2	74185876	.	A	T	613.65	PASS	BaseQRankSum=2.065;DP=52;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=0.303;QD=11.80;ReadPosRankSum=-0.303;SB=-335.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,24:52:99:644,0,579:60:99:0.462
chr2	74185877	.	G	.	.	PASS	END=74185896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr2	74185897	.	T	.	.	PASS	END=74185913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	74185914	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:63:60
chr2	74229807	.	G	.	.	LowGQX	END=74229966	GT	./.
chr2	74230216	.	T	.	.	LowGQX	END=74230315	GT	./.
chr2	74273405	.	A	.	.	LowGQX	END=74273416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273417	.	C	.	.	LowGQX	END=74273768	GT	./.
chr2	74273769	.	G	.	.	LowGQX	END=74273770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273771	.	C	.	.	LowGQX	END=74273772	GT	./.
chr2	74273773	.	T	.	.	LowGQX	END=74273790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273791	.	C	.	.	LowGQX	.	GT	./.
chr2	74273792	.	A	.	.	LowGQX	END=74273795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273796	.	A	.	.	LowGQX	.	GT	./.
chr2	74273797	.	A	.	.	LowGQX	END=74273798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273799	.	A	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	74273800	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273801	.	C	.	.	LowGQX	END=74273803	GT	./.
chr2	74273804	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273805	.	A	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	74273806	.	C	.	.	LowGQX	END=74273809	GT	./.
chr2	74273810	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273811	.	T	.	.	LowGQX	.	GT	./.
chr2	74273812	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273813	.	C	.	.	LowGQX	END=74273814	GT	./.
chr2	74273815	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273816	.	A	.	.	LowGQX	END=74273817	GT	./.
chr2	74273818	.	G	.	.	LowGQX	END=74273820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273821	.	C	.	.	LowGQX	END=74273822	GT	./.
chr2	74273823	.	T	.	.	LowGQX	END=74273824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273825	.	G	.	.	LowGQX	.	GT	./.
chr2	74273826	.	C	.	.	LowGQX	END=74273827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273828	.	C	.	.	LowGQX	.	GT	./.
chr2	74273829	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273830	.	C	.	.	LowGQX	END=74273831	GT	./.
chr2	74273832	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273833	.	G	.	.	LowGQX	.	GT	./.
chr2	74273834	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273835	.	G	.	.	LowGQX	.	GT	./.
chr2	74273836	.	G	.	.	LowGQX	END=74273844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273845	.	G	.	.	LowGQX	END=74273848	GT	./.
chr2	74273849	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273850	.	C	.	.	LowGQX	END=74273851	GT	./.
chr2	74273852	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273853	.	C	.	.	LowGQX	.	GT	./.
chr2	74273854	.	C	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	74273855	.	A	.	.	LowGQX	.	GT	./.
chr2	74273856	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273857	.	C	.	.	LowGQX	END=74273858	GT	./.
chr2	74273859	.	G	.	.	LowGQX	END=74273860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273861	.	A	.	.	LowGQX	END=74273862	GT	./.
chr2	74273863	.	C	.	.	LowGQX	END=74273867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273868	.	A	.	.	LowGQX	.	GT	./.
chr2	74273869	.	T	.	.	LowGQX	END=74273872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273873	.	C	.	.	LowGQX	END=74273874	GT	./.
chr2	74273875	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273876	.	G	.	.	LowGQX	END=74273883	GT	./.
chr2	74273884	.	T	.	.	LowGQX	END=74273885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273886	.	A	.	.	LowGQX	END=74273891	GT	./.
chr2	74273892	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273893	.	C	.	.	LowGQX	END=74273894	GT	./.
chr2	74273895	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273896	.	G	.	.	LowGQX	END=74273898	GT	./.
chr2	74273899	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273900	.	C	.	.	LowGQX	END=74273902	GT	./.
chr2	74273903	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273904	.	A	.	.	LowGQX	.	GT	./.
chr2	74273905	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74273906	.	G	.	.	LowGQX	END=74274128	GT	./.
chr2	74274129	.	C	.	.	LowGQX	END=74274174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74274175	.	C	.	.	LowGQX	END=74274176	GT	./.
chr2	74274177	.	C	.	.	LowGQX	END=74274182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74274183	.	C	.	.	LowGQX	END=74274184	GT	./.
chr2	74274185	.	T	.	.	LowGQX	END=74274189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74274190	.	C	.	.	LowGQX	.	GT	./.
chr2	74274191	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74274192	.	C	.	.	LowGQX	.	GT	./.
chr2	74274193	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74274194	.	C	.	.	LowGQX	.	GT	./.
chr2	74274195	.	T	.	.	LowGQX	END=74274196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74274197	.	C	.	.	LowGQX	.	GT	./.
chr2	74274198	.	C	.	.	LowGQX	END=74274201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74274202	.	G	.	.	LowGQX	END=74274203	GT	./.
chr2	74274204	.	C	.	.	LowGQX	END=74274208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74274209	.	T	.	.	LowGQX	.	GT	./.
chr2	74274210	.	C	.	.	LowGQX	END=74274214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74274215	.	C	.	.	LowGQX	END=74274216	GT	./.
chr2	74274217	.	T	.	.	LowGQX	END=74274229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74274230	.	T	.	.	LowGQX	.	GT	./.
chr2	74274231	.	C	.	.	LowGQX	END=74274232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74274233	.	C	.	.	LowGQX	.	GT	./.
chr2	74274234	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74274235	.	C	.	.	LowGQX	END=74274236	GT	./.
chr2	74274237	.	A	.	.	LowGQX	END=74274293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74274294	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74274295	.	T	.	.	LowGQX	END=74274322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74274323	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	74274324	.	C	.	.	LowGQX	END=74274350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	74274351	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	74274352	.	C	.	.	LowGQX	END=74274448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74274449	.	A	.	.	LowGQX	END=74274903	GT	./.
chr2	74274904	.	C	.	.	LowGQX	END=74274927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74274928	.	C	.	.	LowGQX	.	GT	./.
chr2	74274929	.	C	.	.	LowGQX	END=74275008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74275009	.	T	.	.	LowGQX	END=74275538	GT	./.
chr2	74300673	.	C	.	.	LowGQX	END=74300700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74300701	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74300702	.	C	.	.	LowGQX	END=74300722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74300723	.	T	.	.	LowGQX	END=74300772	GT	./.
chr2	74307622	.	C	.	.	LowGQX	END=74307721	GT	./.
chr2	74314956	.	G	.	.	LowGQX	END=74315157	GT	./.
chr2	74315158	.	A	.	.	LowGQX	END=74315165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74317023	.	G	.	.	LowGQX	END=74317069	GT	./.
chr2	74317070	.	T	.	.	LowGQX	END=74317078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74317079	.	T	.	.	LowGQX	.	GT	./.
chr2	74317080	.	T	.	.	LowGQX	END=74317084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74317085	.	T	.	.	LowGQX	END=74317086	GT	./.
chr2	74317087	.	T	.	.	LowGQX	END=74317092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74317093	.	G	.	.	LowGQX	.	GT	./.
chr2	74317094	.	A	.	.	LowGQX	END=74317124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74317125	.	G	.	.	LowGQX	.	GT	./.
chr2	74317126	.	G	.	.	LowGQX	END=74317131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74317132	.	G	.	.	LowGQX	.	GT	./.
chr2	74317133	.	A	.	.	LowGQX	END=74317134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74317135	.	A	.	.	LowGQX	.	GT	./.
chr2	74317136	.	C	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr2	74317137	.	C	.	.	LowGQX	END=74317138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74317139	.	C	.	.	LowGQX	.	GT	./.
chr2	74317140	.	G	.	.	LowGQX	END=74317152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74317153	.	C	.	.	LowGQX	.	GT	./.
chr2	74317154	.	G	.	.	LowGQX	END=74317157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74317158	.	G	.	.	LowGQX	.	GT	./.
chr2	74317159	.	G	.	.	LowGQX	END=74317163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74317164	.	A	.	.	LowGQX	.	GT	./.
chr2	74317165	.	T	.	.	LowGQX	END=74317174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74320024	.	T	.	.	LowGQX	END=74320123	GT	./.
chr2	74320655	.	G	.	.	LowGQX	END=74320793	GT	./.
chr2	74326402	.	G	.	.	LowGQX	END=74326569	GT	./.
chr2	74326570	.	C	.	.	LowGQX	END=74326644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74326645	.	A	.	.	LowGQX	.	GT	./.
chr2	74326646	.	G	.	.	LowGQX	END=74326654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74326655	.	A	.	.	LowGQX	.	GT	./.
chr2	74326656	.	A	.	.	LowGQX	END=74326678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74326679	.	A	.	.	LowGQX	.	GT	./.
chr2	74326680	.	G	.	.	LowGQX	END=74326720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74326721	.	G	.	.	LowGQX	END=74326739	GT	./.
chr2	74327519	.	G	.	.	LowGQX	END=74327710	GT	./.
chr2	74327711	.	C	.	.	LowGQX	END=74327883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74327884	.	T	.	.	LowGQX	END=74328265	GT	./.
chr2	74328266	.	G	.	.	LowGQX	END=74328323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328324	.	A	.	.	LowGQX	.	GT	./.
chr2	74328325	.	C	.	.	LowGQX	END=74328327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328328	.	G	.	.	LowGQX	.	GT	./.
chr2	74328329	.	C	.	.	LowGQX	END=74328346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328347	.	A	.	.	LowGQX	.	GT	./.
chr2	74328348	.	G	.	.	LowGQX	END=74328360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328361	.	T	.	.	LowGQX	.	GT	./.
chr2	74328362	.	T	.	.	LowGQX	END=74328363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328364	.	C	.	.	LowGQX	END=74328365	GT	./.
chr2	74328366	.	A	.	.	LowGQX	END=74328371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328372	.	C	.	.	LowGQX	END=74328373	GT	./.
chr2	74328374	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328375	.	A	.	.	LowGQX	.	GT	./.
chr2	74328376	.	T	.	.	LowGQX	END=74328383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328384	.	G	.	.	LowGQX	.	GT	./.
chr2	74328385	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328386	.	G	.	.	LowGQX	.	GT	./.
chr2	74328387	.	G	.	.	LowGQX	END=74328402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328403	.	G	.	.	LowGQX	.	GT	./.
chr2	74328404	.	G	.	.	LowGQX	END=74328405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328406	.	G	.	.	LowGQX	.	GT	./.
chr2	74328407	.	C	.	.	LowGQX	END=74328416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328417	.	C	.	.	LowGQX	END=74328439	GT	./.
chr2	74328440	.	C	.	.	LowGQX	END=74328451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328452	.	T	.	.	LowGQX	.	GT	./.
chr2	74328453	.	G	.	.	LowGQX	END=74328458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328459	.	C	.	.	LowGQX	.	GT	./.
chr2	74328460	.	C	.	.	LowGQX	END=74328462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328463	.	C	.	.	LowGQX	.	GT	./.
chr2	74328464	.	A	.	.	LowGQX	END=74328473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328474	.	A	.	.	LowGQX	.	GT	./.
chr2	74328475	.	C	.	.	LowGQX	END=74328477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328478	.	C	.	.	LowGQX	END=74328479	GT	./.
chr2	74328480	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328481	.	C	.	.	LowGQX	END=74328482	GT	./.
chr2	74328483	.	C	.	.	LowGQX	END=74328491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328492	.	C	.	.	LowGQX	.	GT	./.
chr2	74328493	.	T	.	.	LowGQX	END=74328495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328496	.	G	.	.	LowGQX	.	GT	./.
chr2	74328497	.	C	.	.	LowGQX	END=74328498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328499	.	C	.	.	LowGQX	END=74328500	GT	./.
chr2	74328501	.	G	.	.	LowGQX	END=74328503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328504	.	T	.	.	LowGQX	.	GT	./.
chr2	74328505	.	G	.	.	LowGQX	END=74328546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328547	.	G	.	.	LowGQX	.	GT	./.
chr2	74328548	.	G	.	.	LowGQX	END=74328550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328551	.	C	.	.	LowGQX	.	GT	./.
chr2	74328552	.	T	.	.	LowGQX	END=74328588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74328589	.	C	.	.	LowGQX	END=74329303	GT	./.
chr2	74361809	.	A	.	.	LowGQX	END=74361908	GT	./.
chr2	74362598	.	T	.	.	PASS	END=74362718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	74362719	.	G	.	.	PASS	END=74362762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	74362763	.	T	.	.	PASS	END=74362797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	74362798	.	A	.	.	PASS	END=74362836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	74369348	.	C	.	.	PASS	END=74369368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr2	74369369	.	G	.	.	PASS	END=74369382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr2	74369383	.	T	.	.	PASS	END=74369398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:95:60
chr2	74369399	.	C	.	.	PASS	END=74369411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	74369412	.	T	.	.	PASS	END=74369426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	74369427	.	G	.	.	PASS	END=74369538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	74372265	.	A	.	.	PASS	END=74372288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	74372289	.	C	.	.	PASS	END=74372319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	74372320	.	A	.	.	PASS	END=74372353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr2	74372354	.	A	.	.	PASS	END=74372460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr2	74372461	.	A	.	.	PASS	END=74372481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr2	74374837	.	G	.	.	PASS	END=74374848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	74374849	.	C	.	.	PASS	END=74374852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr2	74374853	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:43:60
chr2	74374854	.	G	.	.	PASS	END=74374861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr2	74374862	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:69:60
chr2	74374863	.	C	.	.	PASS	END=74374878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr2	74374879	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:60:60
chr2	74374880	.	C	.	.	PASS	END=74374883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr2	74374884	.	G	A	1018.40	PASS	DP=43;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.8404;MQ=60;MQ0=0;QD=23.68;SB=-559.67	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,42:43:81.26:1051,81,0:60:81:1.000
chr2	74374885	.	G	.	.	PASS	END=74374914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:86:60
chr2	74374915	.	G	.	.	PASS	END=74374935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	74374936	.	G	.	.	PASS	END=74374998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	74374999	.	C	.	.	PASS	END=74375015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr2	74375016	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:72:60
chr2	74375017	.	C	.	.	PASS	END=74375030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr2	74375031	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr2	74375032	.	C	.	.	PASS	END=74375048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr2	74375049	.	A	.	.	PASS	END=74375051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:72:60
chr2	74375052	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:55:60
chr2	74383624	.	A	.	.	LowGQX	END=74383783	GT	./.
chr2	74386217	.	C	.	.	LowGQX	END=74386303	GT	./.
chr2	74386304	.	A	.	.	LowGQX	END=74386406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74392306	.	T	.	.	LowGQX	END=74392478	GT	./.
chr2	74394138	.	T	.	.	LowGQX	END=74394228	GT	./.
chr2	74394229	.	C	.	.	LowGQX	END=74394237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74399712	.	C	.	.	LowGQX	END=74399879	GT	./.
chr2	74399888	.	T	.	.	LowGQX	END=74399987	GT	./.
chr2	74400275	.	A	.	.	LowGQX	END=74400374	GT	./.
chr2	74405685	.	C	.	.	LowGQX	END=74405749	GT	./.
chr2	74405750	.	G	.	.	LowGQX	END=74405844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74414698	.	T	.	.	LowGQX	END=74414797	GT	./.
chr2	74425767	.	C	.	.	LowGQX	END=74425769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74425770	.	T	.	.	LowGQX	.	GT	./.
chr2	74425771	.	G	.	.	LowGQX	END=74425774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74425775	.	G	.	.	LowGQX	.	GT	./.
chr2	74425776	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74425777	.	G	.	.	LowGQX	.	GT	./.
chr2	74425778	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74425779	.	C	.	.	LowGQX	.	GT	./.
chr2	74425780	.	T	.	.	LowGQX	END=74425781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74425782	.	C	.	.	LowGQX	.	GT	./.
chr2	74425783	.	T	.	.	LowGQX	END=74425784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74425785	.	T	.	.	LowGQX	.	GT	./.
chr2	74425786	.	A	.	.	LowGQX	END=74425791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74425792	.	T	.	.	LowGQX	END=74425794	GT	./.
chr2	74425795	.	T	.	.	LowGQX	END=74425797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74425798	.	G	.	.	LowGQX	.	GT	./.
chr2	74425799	.	G	.	.	LowGQX	END=74425800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74425801	.	T	.	.	LowGQX	END=74425802	GT	./.
chr2	74425803	.	C	.	.	LowGQX	END=74425805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74425806	.	G	.	.	LowGQX	.	GT	./.
chr2	74425807	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74425808	.	C	.	.	LowGQX	END=74425871	GT	./.
chr2	74432830	.	A	.	.	LowGQX	END=74433018	GT	./.
chr2	74434829	.	A	.	.	LowGQX	END=74434955	GT	./.
chr2	74435694	.	A	.	.	LowGQX	END=74435850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74437067	.	A	.	.	LowGQX	END=74437178	GT	./.
chr2	74438313	.	T	.	.	LowGQX	END=74438420	GT	./.
chr2	74438866	.	A	.	.	LowGQX	END=74438995	GT	./.
chr2	74441204	.	A	.	.	LowGQX	END=74441371	GT	./.
chr2	74448562	.	T	.	.	LowGQX	END=74448661	GT	./.
chr2	74449928	.	A	.	.	LowGQX	END=74450087	GT	./.
chr2	74451965	.	A	.	.	LowGQX	END=74452138	GT	./.
chr2	74454082	.	A	.	.	LowGQX	END=74454259	GT	./.
chr2	74454618	.	A	.	.	LowGQX	END=74454717	GT	./.
chr2	74454922	.	G	.	.	LowGQX	END=74455021	GT	./.
chr2	74458350	.	T	.	.	LowGQX	END=74458449	GT	./.
chr2	74459583	.	T	.	.	LowGQX	END=74459724	GT	./.
chr2	74459725	.	G	.	.	LowGQX	END=74459773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74459774	.	T	.	.	LowGQX	.	GT	./.
chr2	74459775	.	C	.	.	LowGQX	END=74459789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74459790	.	T	.	.	LowGQX	.	GT	./.
chr2	74459791	.	G	.	.	LowGQX	END=74459793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74460457	.	T	.	.	LowGQX	END=74460655	GT	./.
chr2	74460656	.	G	.	.	LowGQX	END=74460664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74460665	.	A	.	.	LowGQX	.	GT	./.
chr2	74460666	.	A	.	.	LowGQX	END=74460692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74462226	.	A	.	.	LowGQX	END=74462248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74462249	.	C	.	.	LowGQX	END=74462258	GT	./.
chr2	74462259	.	G	.	.	LowGQX	END=74462261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74462262	.	T	.	.	LowGQX	.	GT	./.
chr2	74462263	.	C	.	.	LowGQX	END=74462274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74462275	.	A	.	.	LowGQX	.	GT	./.
chr2	74462276	.	G	.	.	LowGQX	END=74462281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74462282	.	G	.	.	LowGQX	END=74462283	GT	./.
chr2	74462284	.	T	.	.	LowGQX	END=74462285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74462286	.	C	.	.	LowGQX	.	GT	./.
chr2	74462287	.	C	.	.	LowGQX	END=74462309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74462310	.	A	.	.	LowGQX	.	GT	./.
chr2	74462311	.	C	.	.	LowGQX	END=74462321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74462322	.	T	.	.	LowGQX	.	GT	./.
chr2	74462323	.	C	.	.	LowGQX	END=74462343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74466460	.	A	.	.	LowGQX	END=74466549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74466550	.	G	.	.	LowGQX	END=74466664	GT	./.
chr2	74469101	.	C	.	.	LowGQX	END=74469200	GT	./.
chr2	74474161	.	A	.	.	LowGQX	END=74474436	GT	./.
chr2	74475478	.	A	.	.	LowGQX	END=74475479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74475480	.	T	.	.	LowGQX	.	GT	./.
chr2	74475481	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74475482	.	G	.	.	LowGQX	END=74475483	GT	./.
chr2	74475484	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74475485	.	G	.	.	LowGQX	END=74475486	GT	./.
chr2	74475487	.	A	.	.	LowGQX	END=74475490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74475491	.	G	.	.	LowGQX	.	GT	./.
chr2	74475492	.	A	.	.	LowGQX	END=74475494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74475495	.	A	.	.	LowGQX	END=74475496	GT	./.
chr2	74475497	.	G	.	.	LowGQX	END=74475498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74475499	.	G	.	.	LowGQX	.	GT	./.
chr2	74475500	.	C	.	.	LowGQX	END=74475504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74475505	.	C	.	.	LowGQX	END=74475615	GT	./.
chr2	74477468	.	A	.	.	LowGQX	END=74477471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74477472	.	G	.	.	LowGQX	.	GT	./.
chr2	74477473	.	A	.	.	LowGQX	END=74477500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74477501	.	C	.	.	LowGQX	.	GT	./.
chr2	74477502	.	C	.	.	LowGQX	END=74477547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74477548	.	G	.	.	LowGQX	.	GT	./.
chr2	74477549	.	A	.	.	LowGQX	END=74477646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74479304	.	A	.	.	LowGQX	END=74479478	GT	./.
chr2	74479479	.	C	.	.	LowGQX	END=74479490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74479491	.	C	.	.	LowGQX	.	GT	./.
chr2	74479492	.	T	.	.	LowGQX	END=74479495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74479496	.	C	.	.	LowGQX	.	GT	./.
chr2	74479497	.	T	.	.	LowGQX	END=74479517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74480069	.	T	.	.	LowGQX	END=74480091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74480092	.	C	.	.	LowGQX	END=74480298	GT	./.
chr2	74481740	.	A	.	.	LowGQX	END=74481741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74481742	.	T	.	.	LowGQX	.	GT	./.
chr2	74481743	.	T	.	.	LowGQX	END=74481827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74481828	.	A	.	.	LowGQX	END=74481839	GT	./.
chr2	74482900	.	A	.	.	LowGQX	END=74483061	GT	./.
chr2	74486693	.	C	.	.	LowGQX	END=74486792	GT	./.
chr2	74489262	.	A	.	.	LowGQX	.	GT	./.
chr2	74489263	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489264	.	A	.	.	LowGQX	.	GT	./.
chr2	74489265	.	C	.	.	LowGQX	END=74489268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489269	.	C	.	.	LowGQX	.	GT	./.
chr2	74489270	.	G	.	.	LowGQX	END=74489272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489273	.	C	.	.	LowGQX	.	GT	./.
chr2	74489274	.	G	.	.	LowGQX	END=74489277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489278	.	T	.	.	LowGQX	.	GT	./.
chr2	74489279	.	T	.	.	LowGQX	END=74489280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489281	.	G	.	.	LowGQX	.	GT	./.
chr2	74489282	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489283	.	A	.	.	LowGQX	END=74489284	GT	./.
chr2	74489285	.	T	.	.	LowGQX	END=74489287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489288	.	G	.	.	LowGQX	.	GT	./.
chr2	74489289	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489290	.	C	.	.	LowGQX	.	GT	./.
chr2	74489291	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489292	.	C	.	.	LowGQX	END=74489294	GT	./.
chr2	74489295	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489296	.	C	.	.	LowGQX	.	GT	./.
chr2	74489297	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489298	.	C	.	.	LowGQX	END=74489299	GT	./.
chr2	74489300	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489301	.	G	.	.	LowGQX	END=74489302	GT	./.
chr2	74489303	.	C	.	.	LowGQX	END=74489305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489306	.	C	.	.	LowGQX	END=74489307	GT	./.
chr2	74489308	.	G	.	.	LowGQX	END=74489309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489310	.	G	.	.	LowGQX	.	GT	./.
chr2	74489311	.	G	.	.	LowGQX	END=74489312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489313	.	G	.	.	LowGQX	END=74489314	GT	./.
chr2	74489315	.	G	.	.	LowGQX	END=74489316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489317	.	T	.	.	LowGQX	.	GT	./.
chr2	74489318	.	G	.	.	LowGQX	END=74489320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489321	.	G	.	.	LowGQX	.	GT	./.
chr2	74489322	.	A	.	.	LowGQX	END=74489325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489326	.	G	.	.	LowGQX	END=74489328	GT	./.
chr2	74489329	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489330	.	C	.	.	LowGQX	.	GT	./.
chr2	74489331	.	A	.	.	LowGQX	END=74489334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489335	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	74489336	.	C	.	.	LowGQX	.	GT	./.
chr2	74489337	.	A	.	.	LowGQX	END=74489344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489345	.	G	.	.	LowGQX	.	GT	./.
chr2	74489346	.	G	.	.	LowGQX	END=74489350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489351	.	G	.	.	LowGQX	.	GT	./.
chr2	74489352	.	A	.	.	LowGQX	END=74489355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489356	.	C	.	.	LowGQX	.	GT	./.
chr2	74489357	.	G	.	.	LowGQX	END=74489358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74489359	.	T	.	.	LowGQX	.	GT	./.
chr2	74489360	.	C	.	.	LowGQX	END=74489361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74491272	.	A	.	.	LowGQX	END=74491428	GT	./.
chr2	74492229	.	A	.	.	LowGQX	.	GT	./.
chr2	74492230	.	C	.	.	LowGQX	END=74492252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74492253	.	A	.	.	LowGQX	.	GT	./.
chr2	74492254	.	C	.	.	LowGQX	END=74492261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74492262	.	A	.	.	LowGQX	.	GT	./.
chr2	74492263	.	T	.	.	LowGQX	END=74492311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74492312	.	T	.	.	LowGQX	.	GT	./.
chr2	74492313	.	G	.	.	LowGQX	END=74492352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74492353	.	T	.	.	LowGQX	.	GT	./.
chr2	74492354	.	C	.	.	LowGQX	END=74492393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74512858	.	T	.	.	LowGQX	END=74512859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74512860	.	A	.	.	LowGQX	END=74512986	GT	./.
chr2	74512987	.	T	.	.	LowGQX	END=74512995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74512996	.	A	.	.	LowGQX	.	GT	./.
chr2	74512997	.	G	.	.	LowGQX	END=74513002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74513003	.	C	.	.	LowGQX	.	GT	./.
chr2	74513004	.	C	.	.	LowGQX	END=74513031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74531614	.	A	.	.	LowGQX	END=74531788	GT	./.
chr2	74531789	.	A	.	.	LowGQX	END=74531792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74531793	.	G	.	.	LowGQX	END=74531794	GT	./.
chr2	74531795	.	A	.	.	LowGQX	END=74531805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74531806	.	T	.	.	LowGQX	.	GT	./.
chr2	74531807	.	T	.	.	LowGQX	END=74531809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74542062	.	G	.	.	LowGQX	END=74542109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74542110	.	T	.	.	LowGQX	.	GT	./.
chr2	74542111	.	C	.	.	LowGQX	END=74542115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74542116	.	T	.	.	LowGQX	.	GT	./.
chr2	74542117	.	T	.	.	LowGQX	END=74542161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74588280	.	A	.	.	PASS	END=74588316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr2	74588317	.	G	.	.	PASS	END=74588336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:78:60
chr2	74588337	.	C	.	.	PASS	END=74588357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	74588358	.	G	.	.	PASS	END=74588371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	74588372	.	C	.	.	PASS	END=74588431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	74588432	.	G	.	.	PASS	END=74588614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr2	74588615	.	G	.	.	PASS	END=74588735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	74588736	.	C	.	.	PASS	END=74588764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	74588765	.	T	.	.	PASS	END=74588814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	74589128	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:18:60
chr2	74589129	.	C	.	.	PASS	END=74589130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	74589131	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:18:60
chr2	74589132	.	C	.	.	PASS	END=74589138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	74589139	.	C	.	.	PASS	END=74589147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	74589148	.	G	.	.	PASS	END=74589169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr2	74589170	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:69:60
chr2	74589171	.	C	.	.	PASS	END=74589187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr2	74589188	.	G	.	.	PASS	END=74589217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:88:60
chr2	74589218	.	G	.	.	PASS	END=74589297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	74589298	.	C	.	.	PASS	END=74589319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	74589726	.	C	.	.	PASS	END=74589744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	74589745	.	G	.	.	PASS	END=74589842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	74589843	.	C	.	.	PASS	END=74589878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	74589879	.	A	.	.	PASS	END=74589907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr2	74590070	.	G	.	.	PASS	END=74590107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	74590108	.	G	.	.	PASS	END=74590112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	74590113	.	G	.	.	PASS	END=74590122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	74590123	.	G	.	.	PASS	END=74590139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	74590140	.	G	.	.	PASS	END=74590169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr2	74590170	.	A	.	.	PASS	END=74590198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr2	74590199	.	T	.	.	PASS	END=74590288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:308:99:60
chr2	74590289	.	C	.	.	PASS	END=74590345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr2	74590346	.	A	.	.	PASS	END=74590355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr2	74590370	.	G	.	.	PASS	END=74590497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	74590498	.	A	.	.	PASS	END=74590525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	74590526	.	A	.	.	PASS	END=74590546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	74590547	.	G	.	.	PASS	END=74590560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	74590561	.	G	.	.	PASS	END=74590607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	74590608	.	G	.	.	PASS	END=74590610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	74590690	.	T	.	.	PASS	END=74590731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	74590732	.	G	.	.	PASS	END=74590810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	74590811	.	A	.	.	PASS	END=74590817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	74592151	.	G	.	.	PASS	END=74592158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	74592159	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:35:60
chr2	74592160	.	C	.	.	PASS	END=74592163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr2	74592164	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:48:60
chr2	74592165	.	T	.	.	PASS	END=74592173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr2	74592174	.	C	.	.	PASS	END=74592183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr2	74592184	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr2	74592185	.	T	.	.	PASS	END=74592193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	74592194	.	G	.	.	PASS	END=74592222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	74592223	.	G	.	.	PASS	END=74592261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	74592262	.	C	.	.	PASS	END=74592354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	74592355	.	T	.	.	PASS	END=74592396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	74592397	.	T	.	.	PASS	END=74592413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	74592414	.	A	.	.	PASS	END=74592419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	74592591	.	T	.	.	PASS	END=74592633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:77:60
chr2	74592634	.	T	.	.	PASS	END=74592643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:86:60
chr2	74592644	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:76:60
chr2	74592645	.	T	.	.	PASS	END=74592682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	74592683	.	A	.	.	PASS	END=74592801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	74592802	.	T	.	.	PASS	END=74592835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:96:60
chr2	74592969	.	G	.	.	PASS	END=74593000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	74593001	.	G	.	.	PASS	END=74593012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	74593013	.	C	.	.	PASS	END=74593066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	74593067	.	C	.	.	PASS	END=74593131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	74593132	.	T	.	.	PASS	END=74593156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	74593157	.	T	.	.	PASS	END=74593169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	74593170	.	A	.	.	PASS	END=74593196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	74593320	.	A	.	.	PASS	END=74593384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	74593385	.	G	.	.	PASS	END=74593389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:79:60
chr2	74593390	.	G	.	.	PASS	END=74593410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	74593411	.	A	.	.	PASS	END=74593431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	74593432	.	A	.	.	PASS	END=74593467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	74593468	.	C	.	.	PASS	END=74593513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	74593514	.	A	.	.	PASS	END=74593582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr2	74593583	.	C	.	.	PASS	END=74593621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr2	74593622	.	A	.	.	PASS	END=74593659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	74593660	.	T	.	.	PASS	END=74593687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	74593688	.	C	.	.	PASS	END=74593706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	74593707	.	C	.	.	PASS	END=74593735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	74593736	.	C	.	.	PASS	END=74593798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	74593859	.	C	.	.	PASS	END=74593914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	74593915	.	G	.	.	PASS	END=74593944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	74593945	.	G	.	.	PASS	END=74593977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	74593978	.	T	.	.	PASS	END=74594071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	74594072	.	A	.	.	PASS	END=74594110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr2	74594121	.	G	.	.	PASS	END=74594200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	74594201	.	C	.	.	PASS	END=74594217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	74594218	.	A	.	.	PASS	END=74594231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	74594232	.	G	.	.	PASS	END=74594249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	74594250	.	C	.	.	PASS	END=74594284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr2	74594285	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:67:60
chr2	74594428	.	C	.	.	PASS	END=74594498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	74594499	.	G	.	.	PASS	END=74594553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	74594554	.	A	.	.	PASS	END=74594598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	74594772	.	A	.	.	PASS	END=74594779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr2	74594780	.	G	.	.	PASS	END=74594785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	74594786	.	C	.	.	PASS	END=74594787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	74594788	.	G	.	.	PASS	END=74594793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr2	74594794	.	T	.	.	PASS	END=74594795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr2	74594796	.	C	.	.	PASS	END=74594800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	74594801	.	A	.	.	PASS	END=74594802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr2	74594803	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:36:60
chr2	74594804	.	C	.	.	PASS	END=74594816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr2	74594817	.	C	.	.	PASS	END=74594823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr2	74594824	.	T	.	.	PASS	END=74594856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	74594857	.	A	.	.	PASS	END=74594901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	74594902	.	A	.	.	PASS	END=74594974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	74594975	.	T	.	.	PASS	END=74595030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	74595031	.	C	.	.	PASS	END=74595042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	74595047	.	T	.	.	PASS	END=74595112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	74595113	.	A	.	.	PASS	END=74595181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	74595182	.	C	.	.	PASS	END=74595234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	74595235	.	G	.	.	PASS	END=74595260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	74595261	.	G	.	.	PASS	END=74595300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	74595301	.	A	.	.	PASS	END=74595309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	74595804	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:99:60
chr2	74595805	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:60:60
chr2	74595806	.	A	.	.	PASS	END=74595834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr2	74595835	.	A	.	.	PASS	END=74595846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	74595847	.	G	.	.	PASS	END=74595884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	74595885	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:75:57:60
chr2	74595886	.	A	.	.	PASS	END=74595894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	74595895	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:76:72:60
chr2	74595896	.	A	.	.	PASS	END=74595938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	74595939	.	G	.	.	PASS	END=74595997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	74595998	.	T	.	.	PASS	END=74596040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	74596041	.	A	.	.	PASS	END=74596058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	74596174	.	A	.	.	PASS	END=74596206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:90:60
chr2	74596207	.	C	.	.	PASS	END=74596241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	74596242	.	T	.	.	PASS	END=74596307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	74596308	.	C	.	.	PASS	END=74596370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	74596371	.	G	.	.	PASS	END=74596516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	74596517	.	C	.	.	PASS	END=74596549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr2	74596550	.	C	.	.	PASS	END=74596571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr2	74596572	.	T	.	.	PASS	END=74596574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr2	74596575	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:36:60
chr2	74596576	.	G	.	.	PASS	END=74596584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:69:60
chr2	74596585	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:33:60
chr2	74596586	.	C	.	.	PASS	END=74596594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	74596595	.	A	.	.	PASS	END=74596600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr2	74596601	.	C	.	.	PASS	END=74596614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	74596615	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:30:60
chr2	74596616	.	T	.	.	PASS	END=74596625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	74596626	.	A	.	.	PASS	END=74596635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	74596636	.	A	.	.	PASS	END=74596637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	74596638	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	74596639	.	T	.	.	PASS	END=74596659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	74596660	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr2	74596661	.	C	.	.	PASS	END=74596669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	74597041	.	C	.	.	PASS	END=74597059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:80:60
chr2	74597060	.	A	.	.	PASS	END=74597075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	74597076	.	T	.	.	PASS	END=74597106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	74597107	.	C	.	.	PASS	END=74597196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	74597197	.	C	.	.	PASS	END=74597241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	74597242	.	A	.	.	PASS	END=74597247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	74597262	.	G	.	.	PASS	END=74597299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	74597300	.	G	.	.	PASS	END=74597317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	74597318	.	C	.	.	PASS	END=74597340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	74597341	.	T	.	.	PASS	END=74597395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr2	74597396	.	G	.	.	PASS	END=74597481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	74597482	.	T	.	.	PASS	END=74597519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	74597520	.	C	.	.	PASS	END=74597523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	74597542	.	A	.	.	PASS	END=74597635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	74597636	.	G	.	.	PASS	END=74597843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	74597844	.	C	.	.	PASS	END=74597916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	74597917	.	A	.	.	PASS	END=74597928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	74597929	.	T	.	.	PASS	END=74597967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	74597968	.	A	.	.	PASS	END=74597999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	74598000	.	C	.	.	PASS	END=74598003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	74598055	.	C	.	.	PASS	END=74598107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	74598108	.	T	.	.	PASS	END=74598129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	74598130	.	C	.	.	PASS	END=74598186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	74598187	.	C	.	.	PASS	END=74598261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	74598262	.	C	.	.	PASS	END=74598292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	74598293	.	C	.	.	PASS	END=74598327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	74598328	.	T	.	.	PASS	END=74598337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	74598338	.	C	.	.	PASS	END=74598354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr2	74598613	.	C	.	.	PASS	END=74598802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	74598803	.	G	.	.	PASS	END=74598905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	74598906	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:125:99:60
chr2	74600004	.	A	.	.	PASS	END=74600010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	74600011	.	T	.	.	PASS	END=74600027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	74600028	.	G	.	.	PASS	END=74600067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	74600068	.	G	.	.	PASS	END=74600134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	74601282	.	T	.	.	PASS	END=74601288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	74601289	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr2	74601290	.	A	.	.	PASS	END=74601298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:60
chr2	74601299	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:21:60
chr2	74601300	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:39:60
chr2	74601301	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr2	74601302	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:36:60
chr2	74601303	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr2	74601304	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:42:60
chr2	74601305	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:60
chr2	74601306	.	C	.	.	PASS	END=74601315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	74601316	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr2	74601317	.	C	.	.	PASS	END=74601325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	74601326	.	G	.	.	PASS	END=74601330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:39:60
chr2	74601331	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:3:60
chr2	74601332	.	A	.	.	PASS	END=74601333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:60
chr2	74601334	.	C	.	.	PASS	END=74601335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr2	74601336	.	G	.	.	PASS	END=74601338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:36:60
chr2	74601339	.	T	.	.	PASS	END=74601340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:30:60
chr2	74601341	.	C	.	.	PASS	END=74601343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr2	74601344	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:33:60
chr2	74601345	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:27:60
chr2	74601346	.	C	.	.	PASS	END=74601347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	74601348	.	A	.	.	PASS	END=74601349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:59
chr2	74601350	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:51:59
chr2	74601351	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:39:59
chr2	74601352	.	A	.	.	PASS	END=74601360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:58
chr2	74601361	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:45:58
chr2	74601362	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:63:58
chr2	74601363	.	G	.	.	PASS	END=74601364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:42:58
chr2	74601365	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:57:58
chr2	74601366	.	A	.	.	PASS	END=74601369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:57
chr2	74601370	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:5:57
chr2	74601371	.	G	.	.	PASS	END=74601373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:57
chr2	74601374	.	C	.	.	PASS	END=74601376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:57
chr2	74601377	.	A	C	78.47	SB	BaseQRankSum=-2.606;DP=24;Dels=0.00;FS=31.096;HRun=5;HaplotypeScore=3.8381;MQ=57;MQ0=0;MQRankSum=-0.908;QD=3.27;ReadPosRankSum=-2.489;SB=-2.75	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:10,14:24:99:108,0,241:57:78:0.583
chr2	74601378	.	C	.	.	PASS	END=74601380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:57
chr2	74601381	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:63:58
chr2	74601399	.	G	.	.	PASS	END=74601403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr2	74601404	.	C	.	.	PASS	END=74601409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	74601410	.	C	.	.	PASS	END=74601414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr2	74601415	.	C	.	.	PASS	END=74601419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	74601420	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:36:60
chr2	74601421	.	A	.	.	PASS	END=74601440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:72:60
chr2	74601441	.	C	.	.	PASS	END=74601463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:92:60
chr2	74601464	.	G	.	.	PASS	END=74601524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	74603818	.	G	.	.	PASS	END=74603845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	74603846	.	G	.	.	PASS	END=74603926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	74603927	.	G	.	.	PASS	END=74603940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	74604508	.	T	.	.	PASS	END=74604568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	74604569	.	G	.	.	PASS	END=74604636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	74604637	.	G	.	.	PASS	END=74604645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	74604724	.	T	.	.	PASS	END=74604770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	74604771	.	T	.	.	PASS	END=74604828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	74604829	.	C	.	.	PASS	END=74604876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	74604877	.	A	.	.	PASS	END=74604904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	74605076	.	T	.	.	PASS	END=74605084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	74605085	.	C	.	.	PASS	END=74605106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	74605107	.	C	.	.	PASS	END=74605123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	74605124	.	T	.	.	PASS	END=74605167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	74605168	.	T	.	.	PASS	END=74605253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr2	74605254	.	A	.	.	PASS	END=74605279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	74605280	.	G	.	.	PASS	END=74605311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	74605312	.	G	.	.	PASS	END=74605335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	74605336	.	C	.	.	PASS	END=74605356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	74605357	.	T	.	.	PASS	END=74605362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:82:60
chr2	74605363	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:72:60
chr2	74605364	.	G	.	.	PASS	END=74605383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr2	74605384	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:90:60
chr2	74605385	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:54:60
chr2	74605386	.	G	.	.	PASS	END=74605395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:72:60
chr2	74605396	.	A	.	.	PASS	END=74605407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr2	74605408	.	C	.	.	PASS	END=74605420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	74605421	.	T	.	.	PASS	END=74605423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	74607081	.	C	.	.	PASS	END=74607095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:92:60
chr2	74607096	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:64:75:60
chr2	74607097	.	G	.	.	PASS	END=74607114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	74607115	.	A	.	.	PASS	END=74607203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	74607204	.	A	.	.	PASS	END=74607215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	74607603	.	C	.	.	LowGQX	END=74607612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	74607613	.	T	.	.	LowGQX	END=74607702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74617683	.	T	.	.	LowGQX	END=74617782	GT	./.
chr2	74618910	.	C	.	.	PASS	END=74618917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	74618918	.	T	.	.	PASS	END=74618929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	74618930	.	G	.	.	PASS	END=74618972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	74618973	.	C	.	.	PASS	END=74618992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	74618993	.	C	.	.	PASS	END=74618996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	74618997	.	G	.	.	PASS	END=74619035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	74619036	.	A	.	.	PASS	END=74619045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	74619046	.	G	.	.	PASS	END=74619060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	74619061	.	T	.	.	PASS	END=74619084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	74619085	.	T	.	.	PASS	END=74619173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	74619174	.	A	.	.	PASS	END=74619192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	74619193	.	A	.	.	PASS	END=74619202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	74619203	.	C	.	.	PASS	END=74619214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	74641455	.	G	.	.	LowGQX	.	GT	./.
chr2	74641456	.	T	.	.	LowGQX	END=74641458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74641459	.	C	.	.	LowGQX	.	GT	./.
chr2	74641460	.	C	.	.	LowGQX	END=74641512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74641513	.	G	.	.	LowGQX	.	GT	./.
chr2	74641514	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74641515	.	T	.	.	LowGQX	.	GT	./.
chr2	74641516	.	A	.	.	LowGQX	END=74641530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74641531	.	T	.	.	LowGQX	.	GT	./.
chr2	74641532	.	T	.	.	LowGQX	END=74641538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74641539	.	G	.	.	LowGQX	END=74641540	GT	./.
chr2	74641541	.	A	.	.	LowGQX	END=74641542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74641543	.	A	.	.	LowGQX	.	GT	./.
chr2	74641544	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74641545	.	C	.	.	LowGQX	.	GT	./.
chr2	74641546	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74641547	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	74641548	.	A	.	.	LowGQX	END=74641572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74641573	.	G	.	.	LowGQX	.	GT	./.
chr2	74641574	.	T	.	.	LowGQX	END=74641589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74641590	.	C	.	.	LowGQX	END=74641838	GT	./.
chr2	74641839	.	C	.	.	LowGQX	END=74641868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74641869	.	A	.	.	LowGQX	.	GT	./.
chr2	74641870	.	G	.	.	LowGQX	END=74641886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74641887	.	G	.	.	LowGQX	.	GT	./.
chr2	74641888	.	G	.	.	LowGQX	END=74641897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74641898	.	T	.	.	LowGQX	.	GT	./.
chr2	74641899	.	T	.	.	LowGQX	END=74641916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74641917	.	A	.	.	LowGQX	.	GT	./.
chr2	74641918	.	C	.	.	LowGQX	END=74641919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74641920	.	A	.	.	LowGQX	.	GT	./.
chr2	74641921	.	T	.	.	LowGQX	END=74641924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74641925	.	C	.	.	LowGQX	.	GT	./.
chr2	74641926	.	C	.	.	LowGQX	END=74641939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74641940	.	G	.	.	LowGQX	END=74641941	GT	./.
chr2	74641942	.	G	.	.	LowGQX	END=74641952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74641953	.	C	.	.	LowGQX	.	GT	./.
chr2	74641954	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74641955	.	G	.	.	LowGQX	END=74641956	GT	./.
chr2	74641957	.	G	.	.	LowGQX	END=74641964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74641965	.	C	.	.	LowGQX	END=74641966	GT	./.
chr2	74641967	.	A	.	.	LowGQX	END=74641971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74641972	.	A	.	.	LowGQX	.	GT	./.
chr2	74641973	.	C	.	.	LowGQX	END=74641976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74641977	.	A	.	.	LowGQX	.	GT	./.
chr2	74641978	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74641979	.	G	.	.	LowGQX	.	GT	./.
chr2	74641980	.	G	.	.	LowGQX	END=74641997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74641998	.	G	.	.	LowGQX	END=74641999	GT	./.
chr2	74642000	.	A	.	.	LowGQX	END=74642001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74642002	.	G	.	.	LowGQX	.	GT	./.
chr2	74642003	.	A	.	.	LowGQX	END=74642004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74642005	.	C	.	.	LowGQX	.	GT	./.
chr2	74642006	.	G	.	.	LowGQX	END=74642007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74642008	.	T	.	.	LowGQX	.	GT	./.
chr2	74642009	.	G	.	.	LowGQX	END=74642010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74642011	.	C	.	.	LowGQX	.	GT	./.
chr2	74642012	.	G	.	.	LowGQX	END=74642014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74642015	.	G	.	.	LowGQX	.	GT	./.
chr2	74642016	.	A	.	.	LowGQX	END=74642018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74642019	.	C	.	.	LowGQX	.	GT	./.
chr2	74642020	.	A	.	.	LowGQX	END=74642040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74642041	.	T	.	.	LowGQX	.	GT	./.
chr2	74642042	.	T	.	.	LowGQX	END=74642046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74642047	.	T	.	.	LowGQX	END=74642048	GT	./.
chr2	74642049	.	C	.	.	LowGQX	END=74642052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74642053	.	C	.	.	LowGQX	.	GT	./.
chr2	74642054	.	C	.	.	LowGQX	END=74642058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74642059	.	C	.	.	LowGQX	END=74642060	GT	./.
chr2	74642061	.	T	.	.	LowGQX	END=74642081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74642082	.	G	.	.	LowGQX	END=74642083	GT	./.
chr2	74642084	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74642085	.	C	.	.	LowGQX	.	GT	./.
chr2	74642086	.	G	.	.	LowGQX	END=74642091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74642092	.	G	.	.	LowGQX	.	GT	./.
chr2	74642093	.	G	.	.	LowGQX	END=74642094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74642095	.	T	.	.	LowGQX	.	GT	./.
chr2	74642096	.	T	.	.	LowGQX	END=74642097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74642098	.	C	.	.	LowGQX	.	GT	./.
chr2	74642099	.	A	.	.	LowGQX	END=74642114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74642115	.	A	.	.	LowGQX	.	GT	./.
chr2	74642116	.	G	.	.	LowGQX	END=74642130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74642131	.	C	.	.	LowGQX	END=74643054	GT	./.
chr2	74643137	.	C	.	.	LowGQX	END=74643368	GT	./.
chr2	74644472	.	C	.	.	LowGQX	END=74644571	GT	./.
chr2	74645468	.	C	.	.	PASS	END=74645511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	74645512	.	C	.	.	PASS	END=74645569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	74648801	.	C	.	.	LowGQX	END=74648855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74648856	.	C	.	.	LowGQX	END=74649016	GT	./.
chr2	74649279	.	G	.	.	LowGQX	END=74649504	GT	./.
chr2	74649979	.	T	.	.	LowGQX	END=74650078	GT	./.
chr2	74650430	.	T	.	.	LowGQX	END=74650450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74650451	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	74650452	.	G	.	.	LowGQX	END=74650497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74650498	.	G	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr2	74650499	.	A	.	.	LowGQX	END=74650505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74650506	.	T	.	.	LowGQX	END=74650507	GT	./.
chr2	74650508	.	C	.	.	LowGQX	END=74650514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74650515	.	A	.	.	LowGQX	.	GT	./.
chr2	74650516	.	C	.	.	LowGQX	END=74650529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74650582	.	T	.	.	LowGQX	END=74650681	GT	./.
chr2	74650980	.	A	.	.	LowGQX	END=74651041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74651042	.	T	.	.	LowGQX	END=74651117	GT	./.
chr2	74652000	.	A	.	.	LowGQX	END=74652104	GT	./.
chr2	74652200	.	A	.	.	LowGQX	END=74652366	GT	./.
chr2	74652532	.	C	.	.	LowGQX	END=74652631	GT	./.
chr2	74652695	.	A	.	.	LowGQX	END=74652830	GT	./.
chr2	74653362	.	T	.	.	LowGQX	END=74653703	GT	./.
chr2	74654294	.	A	.	.	LowGQX	END=74654303	GT	./.
chr2	74654304	.	T	.	.	LowGQX	END=74654402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74654549	.	A	.	.	LowGQX	END=74654721	GT	./.
chr2	74655393	.	A	.	.	LowGQX	END=74655525	GT	./.
chr2	74655756	.	A	.	.	LowGQX	END=74655866	GT	./.
chr2	74655973	.	A	.	.	LowGQX	END=74656072	GT	./.
chr2	74656953	.	A	.	.	LowGQX	END=74657073	GT	./.
chr2	74657074	.	C	.	.	LowGQX	END=74657092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657093	.	A	.	.	LowGQX	.	GT	./.
chr2	74657094	.	G	.	.	LowGQX	END=74657097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657098	.	C	.	.	LowGQX	.	GT	./.
chr2	74657099	.	C	.	.	LowGQX	END=74657106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657107	.	T	.	.	LowGQX	.	GT	./.
chr2	74657108	.	T	.	.	LowGQX	END=74657110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657111	.	A	.	.	LowGQX	.	GT	./.
chr2	74657112	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657113	.	A	.	.	LowGQX	.	GT	./.
chr2	74657114	.	C	.	.	LowGQX	END=74657120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657121	.	C	.	.	LowGQX	END=74657122	GT	./.
chr2	74657123	.	T	.	.	LowGQX	END=74657127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657128	.	C	.	.	LowGQX	END=74657129	GT	./.
chr2	74657130	.	C	.	.	LowGQX	END=74657131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657132	.	A	.	.	LowGQX	END=74657133	GT	./.
chr2	74657134	.	C	.	.	LowGQX	END=74657136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657137	.	C	.	.	LowGQX	END=74657140	GT	./.
chr2	74657141	.	T	.	.	LowGQX	END=74657143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657144	.	A	.	.	LowGQX	.	GT	./.
chr2	74657145	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657146	.	G	.	.	LowGQX	.	GT	./.
chr2	74657147	.	T	.	.	LowGQX	END=74657150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657151	.	G	.	.	LowGQX	.	GT	./.
chr2	74657152	.	C	.	.	LowGQX	END=74657160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657161	.	A	.	.	LowGQX	END=74657163	GT	./.
chr2	74657164	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657165	.	C	.	.	LowGQX	.	GT	./.
chr2	74657166	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657377	.	A	.	.	LowGQX	END=74657498	GT	./.
chr2	74657569	.	G	.	.	LowGQX	END=74657576	GT	./.
chr2	74657577	.	G	.	.	LowGQX	END=74657592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657593	.	A	.	.	LowGQX	.	GT	./.
chr2	74657594	.	C	.	.	LowGQX	END=74657641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657642	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74657643	.	G	.	.	LowGQX	END=74657644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74657645	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74657646	.	C	.	.	LowGQX	END=74657654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74657655	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74657656	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74657657	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74657658	.	G	.	.	LowGQX	END=74657668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74657724	.	G	.	.	LowGQX	END=74657727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74657728	.	A	.	.	LowGQX	.	GT	./.
chr2	74657729	.	G	.	.	LowGQX	END=74657730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657731	.	T	.	.	LowGQX	.	GT	./.
chr2	74657732	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657733	.	T	.	.	LowGQX	.	GT	./.
chr2	74657734	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657735	.	C	.	.	LowGQX	.	GT	./.
chr2	74657736	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657737	.	T	.	.	LowGQX	END=74657738	GT	./.
chr2	74657739	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657740	.	T	.	.	LowGQX	.	GT	./.
chr2	74657741	.	A	.	.	LowGQX	END=74657743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657744	.	A	.	.	LowGQX	END=74657746	GT	./.
chr2	74657747	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657748	.	A	.	.	LowGQX	END=74657749	GT	./.
chr2	74657750	.	G	.	.	LowGQX	END=74657751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657752	.	A	.	.	LowGQX	.	GT	./.
chr2	74657753	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657754	.	A	.	.	LowGQX	.	GT	./.
chr2	74657755	.	C	.	.	LowGQX	END=74657789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74657790	.	C	.	.	LowGQX	END=74657822	GT	./.
chr2	74657823	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74659405	.	C	.	.	LowGQX	END=74659554	GT	./.
chr2	74659590	.	T	.	.	LowGQX	END=74659795	GT	./.
chr2	74666664	.	G	.	.	LowGQX	END=74666679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74666680	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74666681	.	C	.	.	LowGQX	END=74666682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74666683	.	G	.	.	LowGQX	.	GT	./.
chr2	74666684	.	G	.	.	LowGQX	END=74666686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74666687	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	74666688	.	A	.	.	LowGQX	END=74666689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74666690	.	T	.	.	LowGQX	.	GT	./.
chr2	74666691	.	G	.	.	LowGQX	END=74666700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74666701	.	G	.	.	LowGQX	.	GT	./.
chr2	74666702	.	A	.	.	LowGQX	END=74666708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74666709	.	A	.	.	LowGQX	.	GT	./.
chr2	74666710	.	G	.	.	LowGQX	END=74666712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74666713	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74666714	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74666715	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74666716	.	T	.	.	LowGQX	END=74666721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74666722	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74666723	.	C	.	.	LowGQX	END=74666735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74666736	.	A	.	.	LowGQX	.	GT	./.
chr2	74666737	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74666738	.	T	.	.	LowGQX	.	GT	./.
chr2	74666739	.	C	.	.	LowGQX	END=74666742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74666743	.	C	.	.	LowGQX	.	GT	./.
chr2	74666744	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74666745	.	T	.	.	LowGQX	.	GT	./.
chr2	74666746	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74666747	.	C	.	.	LowGQX	END=74666748	GT	./.
chr2	74666749	.	T	.	.	LowGQX	END=74666751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74666752	.	C	.	.	LowGQX	.	GT	./.
chr2	74666753	.	T	.	.	LowGQX	END=74666756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74666757	.	C	.	.	LowGQX	.	GT	./.
chr2	74666758	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74666759	.	C	.	.	LowGQX	.	GT	./.
chr2	74666760	.	C	.	.	LowGQX	END=74666761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74666762	.	C	.	.	LowGQX	.	GT	./.
chr2	74666763	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74668831	.	A	.	.	LowGQX	END=74668945	GT	./.
chr2	74682223	.	C	.	.	LowGQX	END=74682265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74682266	.	G	.	.	LowGQX	.	GT	./.
chr2	74682267	.	G	.	.	LowGQX	END=74682277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74682278	.	G	.	.	LowGQX	.	GT	./.
chr2	74682279	.	G	.	.	LowGQX	END=74682322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74682421	.	A	.	.	LowGQX	END=74682727	GT	./.
chr2	74682943	.	A	.	.	LowGQX	END=74683046	GT	./.
chr2	74683047	.	G	.	.	LowGQX	END=74683077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74683228	.	A	.	.	LowGQX	END=74683278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74683279	.	G	.	.	LowGQX	END=74683426	GT	./.
chr2	74684453	.	C	.	.	LowGQX	END=74684465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684466	.	T	.	.	LowGQX	.	GT	./.
chr2	74684467	.	C	.	.	LowGQX	END=74684470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684471	.	T	.	.	LowGQX	.	GT	./.
chr2	74684472	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684473	.	C	.	.	LowGQX	.	GT	./.
chr2	74684474	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684475	.	G	.	.	LowGQX	.	GT	./.
chr2	74684476	.	A	.	.	LowGQX	END=74684477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684478	.	G	.	.	LowGQX	.	GT	./.
chr2	74684479	.	G	.	.	LowGQX	END=74684485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684486	.	G	.	.	LowGQX	.	GT	./.
chr2	74684487	.	T	.	.	LowGQX	END=74684488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684489	.	A	.	.	LowGQX	END=74684490	GT	./.
chr2	74684491	.	C	.	.	LowGQX	END=74684492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684493	.	T	.	.	LowGQX	END=74684494	GT	./.
chr2	74684495	.	C	.	.	LowGQX	END=74684497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684498	.	C	.	.	LowGQX	END=74684499	GT	./.
chr2	74684500	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684501	.	T	.	.	LowGQX	END=74684830	GT	./.
chr2	74684831	.	G	.	.	LowGQX	END=74684833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684834	.	C	.	.	LowGQX	.	GT	./.
chr2	74684835	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684836	.	C	.	.	LowGQX	.	GT	./.
chr2	74684837	.	C	.	.	LowGQX	END=74684838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684839	.	C	.	.	LowGQX	.	GT	./.
chr2	74684840	.	C	.	.	LowGQX	END=74684841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684842	.	C	.	.	LowGQX	.	GT	./.
chr2	74684843	.	G	.	.	LowGQX	END=74684845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684846	.	G	.	.	LowGQX	.	GT	./.
chr2	74684847	.	C	.	.	LowGQX	END=74684848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684849	.	C	.	.	LowGQX	END=74684852	GT	./.
chr2	74684853	.	C	.	.	LowGQX	END=74684859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684860	.	T	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr2	74684861	.	G	.	.	LowGQX	END=74684863	GT	./.
chr2	74684864	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684865	.	C	.	.	LowGQX	END=74684866	GT	./.
chr2	74684867	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684868	.	T	.	.	LowGQX	.	GT	./.
chr2	74684869	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684870	.	C	.	.	LowGQX	.	GT	./.
chr2	74684871	.	G	.	.	LowGQX	END=74684874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684875	.	C	.	.	LowGQX	.	GT	./.
chr2	74684876	.	G	.	.	LowGQX	END=74684881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684882	.	C	.	.	LowGQX	END=74684884	GT	./.
chr2	74684885	.	G	.	.	LowGQX	END=74684887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684888	.	C	.	.	LowGQX	.	GT	./.
chr2	74684889	.	C	.	.	LowGQX	END=74684890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684891	.	G	.	.	LowGQX	.	GT	./.
chr2	74684892	.	C	.	.	LowGQX	END=74684896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684897	.	G	.	.	LowGQX	.	GT	./.
chr2	74684898	.	C	.	.	LowGQX	END=74684899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684900	.	A	.	.	LowGQX	END=74684901	GT	./.
chr2	74684902	.	G	.	.	LowGQX	END=74684904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684905	.	C	.	.	LowGQX	.	GT	./.
chr2	74684906	.	T	.	.	LowGQX	END=74684910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684911	.	A	.	.	LowGQX	END=74684912	GT	./.
chr2	74684913	.	T	.	.	LowGQX	END=74684915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684916	.	T	.	.	LowGQX	.	GT	./.
chr2	74684917	.	C	.	.	LowGQX	END=74684919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684920	.	T	.	.	LowGQX	END=74684922	GT	./.
chr2	74684923	.	T	.	.	LowGQX	END=74684925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684926	.	C	.	.	LowGQX	.	GT	./.
chr2	74684927	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684928	.	C	.	.	LowGQX	END=74684929	GT	./.
chr2	74684930	.	T	.	.	LowGQX	END=74684933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684934	.	C	.	.	LowGQX	END=74684935	GT	./.
chr2	74684936	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684937	.	G	.	.	LowGQX	.	GT	./.
chr2	74684938	.	C	.	.	LowGQX	END=74684941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684942	.	T	.	.	LowGQX	.	GT	./.
chr2	74684943	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684944	.	C	.	.	LowGQX	.	GT	./.
chr2	74684945	.	G	.	.	LowGQX	END=74684947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684948	.	T	.	.	LowGQX	.	GT	./.
chr2	74684949	.	G	.	.	LowGQX	END=74684977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684978	.	T	.	.	LowGQX	END=74684979	GT	./.
chr2	74684980	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74684981	.	T	.	.	LowGQX	END=74684993	GT	./.
chr2	74685715	.	G	.	.	LowGQX	END=74685814	GT	./.
chr2	74685999	.	A	.	.	LowGQX	END=74686006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74686007	.	A	.	.	LowGQX	.	GT	./.
chr2	74686008	.	G	.	.	LowGQX	END=74686028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74686029	.	C	.	.	LowGQX	.	GT	./.
chr2	74686030	.	C	.	.	LowGQX	END=74686034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74686035	.	A	.	.	LowGQX	.	GT	./.
chr2	74686036	.	C	.	.	LowGQX	END=74686047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74686048	.	T	.	.	LowGQX	.	GT	./.
chr2	74686049	.	G	.	.	LowGQX	END=74686057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74686058	.	G	.	.	LowGQX	.	GT	./.
chr2	74686059	.	G	.	.	LowGQX	END=74686062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74686063	.	G	.	.	LowGQX	END=74686064	GT	./.
chr2	74686065	.	T	.	.	LowGQX	END=74686244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74686768	.	A	.	.	LowGQX	END=74686782	GT	./.
chr2	74686783	.	G	.	.	LowGQX	END=74686800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74686801	.	A	.	.	LowGQX	.	GT	./.
chr2	74686802	.	G	.	.	LowGQX	END=74686812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74686813	.	G	.	.	LowGQX	.	GT	./.
chr2	74686814	.	T	.	.	LowGQX	END=74686822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74686823	.	T	.	.	LowGQX	.	GT	./.
chr2	74686824	.	C	.	.	LowGQX	END=74686839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74686840	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	74686841	.	T	.	.	LowGQX	END=74686849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74686850	.	C	.	.	LowGQX	.	GT	./.
chr2	74686851	.	A	.	.	LowGQX	END=74686859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74686860	.	T	.	.	LowGQX	.	GT	./.
chr2	74686861	.	A	.	.	LowGQX	END=74686868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74686869	.	T	.	.	LowGQX	.	GT	./.
chr2	74686870	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74686871	.	G	.	.	LowGQX	.	GT	./.
chr2	74686872	.	T	.	.	LowGQX	END=74686874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74686998	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74686999	.	G	.	.	LowGQX	END=74687178	GT	./.
chr2	74687346	.	A	.	.	LowGQX	END=74687569	GT	./.
chr2	74687570	.	G	.	.	LowGQX	END=74687636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74687637	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74687638	.	A	.	.	LowGQX	END=74687735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74687736	.	T	.	.	LowGQX	END=74687810	GT	./.
chr2	74688351	.	C	.	.	PASS	END=74688353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	74688354	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:6:60
chr2	74688355	.	A	.	.	PASS	END=74688376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	74688377	.	C	.	.	PASS	END=74688386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	74688387	.	C	.	.	PASS	END=74688389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	74688390	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:30:60
chr2	74688391	.	T	.	.	PASS	END=74688394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr2	74688395	.	C	.	.	PASS	END=74688399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr2	74688400	.	C	.	.	PASS	END=74688402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr2	74688403	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:33:60
chr2	74688404	.	A	.	.	PASS	END=74688411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	74688412	.	T	.	.	PASS	END=74688413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr2	74688414	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:50:60
chr2	74688415	.	G	.	.	PASS	END=74688432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:83:60
chr2	74688433	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:74:60
chr2	74688434	.	G	.	.	PASS	END=74688446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr2	74688447	.	G	.	.	PASS	END=74688469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	74688470	.	C	.	.	PASS	END=74688486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	74688487	.	C	.	.	PASS	END=74688517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	74688518	.	G	.	.	PASS	END=74688611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	74688612	.	G	.	.	PASS	END=74688698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr2	74688699	.	G	.	.	PASS	END=74688750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:60
chr2	74688751	.	A	.	.	PASS	END=74688845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:286:99:60
chr2	74688846	.	G	.	.	PASS	END=74688912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:370:99:60
chr2	74688913	.	G	.	.	PASS	END=74689007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:386:99:60
chr2	74689008	.	T	.	.	PASS	END=74689134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:296:99:60
chr2	74689135	.	G	.	.	PASS	END=74689194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr2	74689195	.	T	.	.	PASS	END=74689301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr2	74689302	.	C	.	.	PASS	END=74689420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr2	74689421	.	G	.	.	PASS	END=74689495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr2	74689496	.	A	.	.	PASS	END=74689535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	74689536	.	C	.	.	PASS	END=74689614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	74689615	.	A	.	.	PASS	END=74689682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	74689683	.	T	.	.	PASS	END=74689727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	74689728	.	G	.	.	PASS	END=74689763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	74689764	.	G	.	.	PASS	END=74689811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr2	74689812	.	A	.	.	PASS	END=74689888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:245:99:60
chr2	74689889	.	C	.	.	PASS	END=74689980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:265:99:60
chr2	74689981	.	C	.	.	PASS	END=74690009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr2	74690010	.	T	.	.	PASS	END=74690038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr2	74690039	.	G	.	.	PASS	END=74690067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	74690068	.	C	.	.	PASS	END=74690103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	74690104	.	G	.	.	PASS	END=74690116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	74690117	.	T	.	.	PASS	END=74690162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr2	74690163	.	G	.	.	PASS	END=74690182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr2	74690183	.	G	A	789.34	PASS	BaseQRankSum=-0.484;DP=46;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=4.7771;MQ=60;MQ0=0;MQRankSum=0.596;QD=17.16;ReadPosRankSum=-1.924;SB=-384.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:18,28:46:99:819,0,556:60:99:0.609
chr2	74690184	.	C	.	.	PASS	END=74690190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	74690266	.	A	.	.	PASS	END=74690274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr2	74690275	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:51:60
chr2	74690276	.	A	.	.	PASS	END=74690278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr2	74690279	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:66:60
chr2	74690280	.	C	.	.	PASS	END=74690288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:60
chr2	74690289	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:66:60
chr2	74690290	.	C	.	.	PASS	END=74690307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:80:60
chr2	74690308	.	C	.	.	PASS	END=74690338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	74690339	.	C	.	.	PASS	END=74690433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	74690434	.	T	.	.	PASS	END=74690475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	74690476	.	A	.	.	PASS	END=74690489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	74690490	.	A	.	.	PASS	END=74690512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr2	74690513	.	C	.	.	PASS	END=74690518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr2	74690519	.	T	.	.	PASS	END=74690538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr2	74690539	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:54:60
chr2	74690540	.	A	.	.	PASS	END=74690552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	74690553	.	T	.	.	PASS	END=74690563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	74690564	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:75:60
chr2	74691572	.	G	.	.	PASS	END=74691605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr2	74691606	.	T	.	.	PASS	END=74691641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:97:60
chr2	74691642	.	C	.	.	PASS	END=74691668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	74691669	.	C	.	.	PASS	END=74691765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	74691766	.	A	.	.	PASS	END=74691793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	74691794	.	C	.	.	PASS	END=74691823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	74691824	.	G	.	.	PASS	END=74691871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	74691872	.	A	.	.	PASS	END=74691900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr2	74691972	.	G	.	.	PASS	END=74692002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	74692003	.	C	.	.	PASS	END=74692016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	74692017	.	G	.	.	PASS	END=74692035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	74692036	.	C	.	.	PASS	END=74692103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	74692104	.	C	.	.	PASS	END=74692191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	74692192	.	C	.	.	PASS	END=74692255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	74692256	.	G	.	.	PASS	END=74692320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	74692321	.	T	.	.	PASS	END=74692344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	74692345	.	T	.	.	PASS	END=74692382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr2	74692383	.	T	.	.	PASS	END=74692400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	74692401	.	A	.	.	PASS	END=74692418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr2	74692419	.	T	.	.	PASS	END=74692420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr2	74692421	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:27:60
chr2	74692422	.	A	.	.	PASS	END=74692425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr2	74699244	.	T	.	.	LowGQX	END=74699381	GT	./.
chr2	74699483	.	A	.	.	LowGQX	END=74699599	GT	./.
chr2	74699692	.	G	.	.	LowGQX	END=74699741	GT	./.
chr2	74699742	.	C	.	.	LowGQX	END=74699791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74701671	.	C	.	.	LowGQX	END=74701931	GT	./.
chr2	74701984	.	T	.	.	LowGQX	END=74702244	GT	./.
chr2	74702330	.	C	.	.	LowGQX	END=74702531	GT	./.
chr2	74702737	.	A	.	.	LowGQX	END=74702855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74707894	.	A	.	.	LowGQX	END=74708011	GT	./.
chr2	74708081	.	A	.	.	LowGQX	END=74708213	GT	./.
chr2	74708348	.	A	.	.	LowGQX	END=74708501	GT	./.
chr2	74708573	.	T	.	.	LowGQX	END=74708672	GT	./.
chr2	74708942	.	A	.	.	LowGQX	END=74709966	GT	./.
chr2	74710193	.	A	.	.	LowGQX	END=74710292	GT	./.
chr2	74710444	.	T	.	.	LowGQX	END=74710543	GT	./.
chr2	74710631	.	G	.	.	LowGQX	END=74710730	GT	./.
chr2	74717150	.	A	.	.	LowGQX	END=74717256	GT	./.
chr2	74717369	.	A	.	.	LowGQX	END=74717602	GT	./.
chr2	74717775	.	T	.	.	LowGQX	END=74717874	GT	./.
chr2	74718234	.	T	.	.	LowGQX	END=74718240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718241	.	C	.	.	LowGQX	.	GT	./.
chr2	74718242	.	A	.	.	LowGQX	END=74718243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718244	.	T	.	.	LowGQX	.	GT	./.
chr2	74718245	.	A	.	.	LowGQX	END=74718265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718266	.	A	.	.	LowGQX	END=74718267	GT	./.
chr2	74718268	.	G	.	.	LowGQX	END=74718269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718270	.	A	.	.	LowGQX	.	GT	./.
chr2	74718271	.	A	.	.	LowGQX	END=74718279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718280	.	A	.	.	LowGQX	.	GT	./.
chr2	74718281	.	G	.	.	LowGQX	END=74718283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718284	.	T	.	.	LowGQX	END=74718285	GT	./.
chr2	74718286	.	T	.	.	LowGQX	END=74718287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718288	.	G	.	.	LowGQX	.	GT	./.
chr2	74718289	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718290	.	G	.	.	LowGQX	END=74718292	GT	./.
chr2	74718293	.	G	.	.	LowGQX	END=74718294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718295	.	A	.	.	LowGQX	.	GT	./.
chr2	74718296	.	C	.	.	LowGQX	END=74718300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718301	.	G	.	.	LowGQX	.	GT	./.
chr2	74718302	.	G	.	.	LowGQX	END=74718303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718304	.	A	.	.	LowGQX	END=74718305	GT	./.
chr2	74718306	.	C	.	.	LowGQX	END=74718307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718308	.	C	.	.	LowGQX	.	GT	./.
chr2	74718309	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718310	.	A	.	.	LowGQX	.	GT	./.
chr2	74718311	.	G	.	.	LowGQX	END=74718312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718313	.	T	.	.	LowGQX	.	GT	./.
chr2	74718314	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718315	.	A	.	.	LowGQX	.	GT	./.
chr2	74718316	.	G	.	.	LowGQX	END=74718317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718318	.	A	.	.	LowGQX	END=74718319	GT	./.
chr2	74718320	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718321	.	T	.	.	LowGQX	.	GT	./.
chr2	74718322	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718323	.	G	.	.	LowGQX	.	GT	./.
chr2	74718324	.	G	.	.	LowGQX	END=74718326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718327	.	A	.	.	LowGQX	.	GT	./.
chr2	74718328	.	G	.	.	LowGQX	END=74718333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718413	.	T	.	.	LowGQX	.	GT	./.
chr2	74718414	.	T	.	.	LowGQX	END=74718425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718426	.	G	.	.	LowGQX	.	GT	./.
chr2	74718427	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718428	.	A	.	.	LowGQX	.	GT	./.
chr2	74718429	.	C	.	.	LowGQX	END=74718430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718431	.	A	.	.	LowGQX	.	GT	./.
chr2	74718432	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718433	.	C	.	.	LowGQX	.	GT	./.
chr2	74718434	.	T	.	.	LowGQX	END=74718439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718440	.	G	.	.	LowGQX	.	GT	./.
chr2	74718441	.	G	.	.	LowGQX	END=74718443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718444	.	A	.	.	LowGQX	.	GT	./.
chr2	74718445	.	T	.	.	LowGQX	END=74718446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718447	.	A	.	.	LowGQX	.	GT	./.
chr2	74718448	.	G	.	.	LowGQX	END=74718454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718455	.	C	.	.	LowGQX	.	GT	./.
chr2	74718456	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718457	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr2	74718458	.	T	.	.	LowGQX	END=74718464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718465	.	C	.	.	LowGQX	END=74718466	GT	./.
chr2	74718467	.	G	.	.	LowGQX	END=74718468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718469	.	A	.	.	LowGQX	END=74718471	GT	./.
chr2	74718472	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718473	.	C	.	.	LowGQX	END=74718476	GT	./.
chr2	74718477	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718478	.	T	.	.	LowGQX	END=74718481	GT	./.
chr2	74718482	.	G	.	.	LowGQX	END=74718488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718489	.	G	.	.	LowGQX	END=74718490	GT	./.
chr2	74718491	.	G	.	.	LowGQX	END=74718492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718493	.	T	.	.	LowGQX	.	GT	./.
chr2	74718494	.	G	.	.	LowGQX	END=74718496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718497	.	G	.	.	LowGQX	END=74718498	GT	./.
chr2	74718499	.	A	.	.	LowGQX	END=74718503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718504	.	T	.	.	LowGQX	.	GT	./.
chr2	74718505	.	G	.	.	LowGQX	END=74718506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718507	.	G	.	.	LowGQX	.	GT	./.
chr2	74718508	.	A	.	.	LowGQX	END=74718512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718606	.	A	.	.	LowGQX	END=74718630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718631	.	T	.	.	LowGQX	END=74718729	GT	./.
chr2	74718730	.	C	.	.	LowGQX	END=74718731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718732	.	A	.	.	LowGQX	END=74718733	GT	./.
chr2	74718734	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718735	.	A	.	.	LowGQX	.	GT	./.
chr2	74718736	.	G	.	.	LowGQX	END=74718739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718740	.	G	.	.	LowGQX	.	GT	./.
chr2	74718741	.	G	.	.	LowGQX	END=74718743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718744	.	A	.	.	LowGQX	END=74718748	GT	./.
chr2	74718749	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718750	.	A	.	.	LowGQX	.	GT	./.
chr2	74718751	.	A	.	.	LowGQX	END=74718753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718754	.	G	.	.	LowGQX	END=74718756	GT	./.
chr2	74718757	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718758	.	C	.	.	LowGQX	END=74718759	GT	./.
chr2	74718760	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718761	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	74718762	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718763	.	A	.	.	LowGQX	END=74718764	GT	./.
chr2	74718765	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718766	.	A	.	.	LowGQX	.	GT	./.
chr2	74718767	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718768	.	A	.	.	LowGQX	.	GT	./.
chr2	74718769	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718770	.	G	.	.	LowGQX	.	GT	./.
chr2	74718771	.	A	.	.	LowGQX	END=74718772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718773	.	A	.	.	LowGQX	END=74718776	GT	./.
chr2	74718777	.	C	.	.	LowGQX	END=74718778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718779	.	C	.	.	LowGQX	END=74718780	GT	./.
chr2	74718781	.	G	.	.	LowGQX	END=74718782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718783	.	A	.	.	LowGQX	.	GT	./.
chr2	74718784	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718785	.	A	.	.	LowGQX	END=74718787	GT	./.
chr2	74718788	.	C	.	.	LowGQX	END=74718791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718792	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr2	74718793	.	G	.	.	LowGQX	END=74718794	GT	./.
chr2	74718795	.	T	.	.	LowGQX	END=74718799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718800	.	G	.	.	LowGQX	END=74718802	GT	./.
chr2	74718803	.	A	.	.	LowGQX	END=74718807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718808	.	G	.	.	LowGQX	.	GT	./.
chr2	74718809	.	C	.	.	LowGQX	END=74718813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718814	.	G	.	.	LowGQX	END=74718815	GT	./.
chr2	74718816	.	A	.	.	LowGQX	END=74718817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718818	.	C	.	.	LowGQX	END=74718819	GT	./.
chr2	74718820	.	T	.	.	LowGQX	END=74718824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718825	.	A	.	.	LowGQX	.	GT	./.
chr2	74718826	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718827	.	C	.	.	LowGQX	.	GT	./.
chr2	74718828	.	T	.	.	LowGQX	END=74718831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718832	.	A	.	.	LowGQX	.	GT	./.
chr2	74718833	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718834	.	C	.	.	LowGQX	.	GT	./.
chr2	74718835	.	G	.	.	LowGQX	END=74718837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718838	.	G	.	.	LowGQX	.	GT	./.
chr2	74718839	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718840	.	A	.	.	LowGQX	.	GT	./.
chr2	74718841	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718842	.	G	.	.	LowGQX	END=74718843	GT	./.
chr2	74718844	.	G	.	.	LowGQX	END=74718846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718847	.	C	.	.	LowGQX	.	GT	./.
chr2	74718848	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718849	.	A	.	.	LowGQX	.	GT	./.
chr2	74718850	.	G	.	.	LowGQX	END=74718851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718852	.	A	.	.	LowGQX	END=74718853	GT	./.
chr2	74718854	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718855	.	T	.	.	LowGQX	.	GT	./.
chr2	74718856	.	G	.	.	LowGQX	END=74718858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718859	.	G	.	.	LowGQX	END=74718862	GT	./.
chr2	74718863	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718864	.	G	.	.	LowGQX	.	GT	./.
chr2	74718865	.	G	.	.	LowGQX	END=74718867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718868	.	C	.	.	LowGQX	.	GT	./.
chr2	74718869	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74718870	.	G	.	.	LowGQX	END=74718871	GT	./.
chr2	74718872	.	G	.	.	LowGQX	END=74718877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74719107	.	C	.	.	LowGQX	END=74719206	GT	./.
chr2	74719263	.	C	.	.	LowGQX	END=74719362	GT	./.
chr2	74719429	.	A	.	.	LowGQX	END=74719574	GT	./.
chr2	74719771	.	A	.	.	LowGQX	END=74719876	GT	./.
chr2	74720047	.	A	.	.	LowGQX	END=74720412	GT	./.
chr2	74725052	.	C	.	.	LowGQX	END=74725151	GT	./.
chr2	74725152	.	G	.	.	LowGQX	END=74725170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74725171	.	T	.	.	LowGQX	.	GT	./.
chr2	74725172	.	T	.	.	LowGQX	END=74725201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74725202	.	T	.	.	LowGQX	.	GT	./.
chr2	74725203	.	C	.	.	LowGQX	END=74725205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74725206	.	C	.	.	LowGQX	.	GT	./.
chr2	74725207	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74725208	.	C	.	.	LowGQX	.	GT	./.
chr2	74725209	.	G	.	.	LowGQX	END=74725216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74725217	.	T	.	.	LowGQX	.	GT	./.
chr2	74725218	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74725219	.	C	.	.	LowGQX	.	GT	./.
chr2	74725220	.	A	.	.	LowGQX	END=74725261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74725262	.	A	.	.	LowGQX	.	GT	./.
chr2	74725263	.	C	.	.	LowGQX	END=74725268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74725269	.	G	.	.	LowGQX	.	GT	./.
chr2	74725270	.	C	.	.	LowGQX	END=74725273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74725274	.	T	.	.	LowGQX	.	GT	./.
chr2	74725275	.	T	.	.	LowGQX	END=74725279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74725280	.	A	G	14.90	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.45;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	74725281	.	G	.	.	LowGQX	END=74725353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74725354	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr2	74725355	.	T	.	.	LowGQX	END=74725436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74725437	.	C	.	.	LowGQX	END=74725447	GT	./.
chr2	74726459	.	C	.	.	LowGQX	END=74726512	GT	./.
chr2	74726513	.	A	.	.	LowGQX	END=74726517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74726518	.	C	.	.	LowGQX	.	GT	./.
chr2	74726519	.	T	.	.	LowGQX	END=74726529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74726530	.	C	.	.	LowGQX	.	GT	./.
chr2	74726531	.	A	.	.	LowGQX	END=74726546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74726547	.	C	.	.	LowGQX	.	GT	./.
chr2	74726548	.	C	.	.	LowGQX	END=74726550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74726551	.	A	.	.	LowGQX	.	GT	./.
chr2	74726552	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74726553	.	C	.	.	LowGQX	.	GT	./.
chr2	74726554	.	C	.	.	LowGQX	END=74726556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74726557	.	C	.	.	LowGQX	.	GT	./.
chr2	74726558	.	T	.	.	LowGQX	END=74726580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74726581	.	T	.	.	LowGQX	END=74726664	GT	./.
chr2	74729782	.	T	.	.	LowGQX	END=74729988	GT	./.
chr2	74732244	.	A	.	.	LowGQX	END=74732343	GT	./.
chr2	74732457	.	C	.	.	LowGQX	END=74732556	GT	./.
chr2	74732673	.	A	.	.	LowGQX	END=74732772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74732831	.	C	.	.	LowGQX	END=74732840	GT	./.
chr2	74732841	.	G	.	.	LowGQX	END=74732842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74732843	.	C	.	.	LowGQX	END=74732844	GT	./.
chr2	74732845	.	T	.	.	LowGQX	END=74732850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74732851	.	C	.	.	LowGQX	.	GT	./.
chr2	74732852	.	A	.	.	LowGQX	END=74732868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74732869	.	G	.	.	LowGQX	.	GT	./.
chr2	74732870	.	G	.	.	LowGQX	END=74732873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74732874	.	C	.	.	LowGQX	END=74732875	GT	./.
chr2	74732876	.	T	.	.	LowGQX	END=74732878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74732879	.	A	.	.	LowGQX	.	GT	./.
chr2	74732880	.	T	.	.	LowGQX	END=74732896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74732897	.	A	.	.	LowGQX	.	GT	./.
chr2	74732898	.	C	.	.	LowGQX	END=74732930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74733077	.	A	.	.	LowGQX	END=74733186	GT	./.
chr2	74733294	.	G	.	.	LowGQX	END=74733371	GT	./.
chr2	74733372	.	C	.	.	LowGQX	END=74733393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74733857	.	A	.	.	LowGQX	END=74734013	GT	./.
chr2	74734167	.	A	.	.	LowGQX	END=74734276	GT	./.
chr2	74734700	.	C	.	5.79	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:4:0.01:60:0
chr2	74734701	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr2	74734702	.	C	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr2	74734703	.	C	.	.	LowGQX	END=74734737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74734738	.	G	.	24.37	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.76:60:1
chr2	74734739	.	G	.	.	LowGQX	END=74734740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74734741	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74734742	.	C	.	.	LowGQX	END=74734744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74734745	.	G	.	.	LowGQX	.	GT	./.
chr2	74734746	.	T	.	.	LowGQX	END=74734747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74734748	.	C	.	.	LowGQX	.	GT	./.
chr2	74734749	.	C	.	.	LowGQX	END=74734752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74734753	.	G	.	.	LowGQX	.	GT	./.
chr2	74734754	.	C	.	.	LowGQX	END=74734756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74734757	.	C	.	.	LowGQX	.	GT	./.
chr2	74734758	.	A	.	.	LowGQX	END=74734759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74734760	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74734761	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74734762	.	C	.	.	LowGQX	END=74734763	GT	./.
chr2	74734764	.	A	.	.	LowGQX	END=74734773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74734774	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74734775	.	G	.	.	LowGQX	.	GT	./.
chr2	74734776	.	C	.	.	LowGQX	END=74734780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74734781	.	C	.	.	LowGQX	.	GT	./.
chr2	74734782	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74734783	.	G	.	.	LowGQX	.	GT	./.
chr2	74734784	.	A	.	.	LowGQX	END=74734787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74734788	.	G	.	.	LowGQX	END=74734791	GT	./.
chr2	74734792	.	C	.	.	LowGQX	END=74734795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74734796	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr2	74734797	.	T	.	.	LowGQX	END=74734799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74741307	.	G	.	.	LowGQX	END=74741324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74741325	.	C	.	.	LowGQX	.	GT	./.
chr2	74741326	.	C	.	.	LowGQX	END=74741327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74741328	.	C	.	.	LowGQX	.	GT	./.
chr2	74741329	.	C	.	.	LowGQX	END=74741335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74741336	.	C	.	.	LowGQX	.	GT	./.
chr2	74741337	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74741338	.	G	.	.	LowGQX	.	GT	./.
chr2	74741339	.	A	.	.	LowGQX	END=74741346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74741347	.	A	.	.	LowGQX	.	GT	./.
chr2	74741348	.	A	.	.	LowGQX	END=74741351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74741352	.	T	.	.	LowGQX	.	GT	./.
chr2	74741353	.	G	.	.	LowGQX	END=74741354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74741355	.	A	.	.	LowGQX	.	GT	./.
chr2	74741356	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74741357	.	G	.	.	LowGQX	.	GT	./.
chr2	74741358	.	C	.	.	LowGQX	END=74741371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74741372	.	C	.	.	LowGQX	END=74741373	GT	./.
chr2	74741374	.	G	.	.	LowGQX	END=74741394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74741395	.	C	.	.	LowGQX	END=74741406	GT	./.
chr2	74741862	.	T	.	.	LowGQX	END=74742401	GT	./.
chr2	74742758	.	A	.	.	LowGQX	END=74742999	GT	./.
chr2	74743098	.	A	.	.	LowGQX	END=74743558	GT	./.
chr2	74745571	.	G	.	.	LowGQX	END=74745682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74745683	.	T	.	.	LowGQX	END=74745731	GT	./.
chr2	74746165	.	A	.	.	LowGQX	END=74746359	GT	./.
chr2	74746681	.	A	.	.	LowGQX	END=74746683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	74746684	.	T	.	.	LowGQX	.	GT	./.
chr2	74746685	.	T	.	.	LowGQX	END=74746733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74746734	.	C	.	.	LowGQX	.	GT	./.
chr2	74746735	.	T	.	.	LowGQX	END=74746793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74746794	.	T	.	.	LowGQX	.	GT	./.
chr2	74746795	.	T	.	.	LowGQX	END=74746826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74746827	.	T	.	.	LowGQX	END=74746875	GT	./.
chr2	74747040	.	A	.	.	LowGQX	END=74747163	GT	./.
chr2	74749705	.	A	.	.	LowGQX	END=74749712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74749713	.	G	.	.	LowGQX	.	GT	./.
chr2	74749714	.	C	.	.	LowGQX	END=74749717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74749718	.	G	.	.	LowGQX	.	GT	./.
chr2	74749719	.	C	.	.	LowGQX	END=74749726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74749727	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74749728	.	T	.	.	LowGQX	END=74749766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74749767	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	74749768	.	C	.	.	LowGQX	END=74749856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74749857	.	G	.	.	LowGQX	END=74749900	GT	./.
chr2	74749981	.	A	.	.	LowGQX	END=74750173	GT	./.
chr2	74750244	.	A	.	.	LowGQX	END=74750347	GT	./.
chr2	74750435	.	A	.	.	LowGQX	END=74750492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74750493	.	A	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	74750494	.	G	.	.	LowGQX	END=74750554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74750555	.	T	.	.	LowGQX	END=74750666	GT	./.
chr2	74751048	.	A	.	.	LowGQX	END=74751345	GT	./.
chr2	74751346	.	C	.	.	LowGQX	END=74751436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74752120	.	C	.	.	LowGQX	END=74752329	GT	./.
chr2	74752619	.	C	.	.	LowGQX	END=74752624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74752625	.	T	.	.	LowGQX	.	GT	./.
chr2	74752626	.	G	.	.	LowGQX	END=74752627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74752628	.	T	.	.	LowGQX	.	GT	./.
chr2	74752629	.	C	.	.	LowGQX	END=74752656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74752657	.	A	.	.	LowGQX	END=74752804	GT	./.
chr2	74752805	.	C	.	.	LowGQX	END=74752841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74752842	.	A	.	.	LowGQX	.	GT	./.
chr2	74752843	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74752844	.	G	.	.	LowGQX	.	GT	./.
chr2	74752845	.	C	.	.	LowGQX	END=74752856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74753896	.	C	.	.	LowGQX	END=74753995	GT	./.
chr2	74754066	.	A	.	.	LowGQX	END=74754078	GT	./.
chr2	74754079	.	T	.	.	LowGQX	END=74754275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74754373	.	A	.	.	LowGQX	END=74754492	GT	./.
chr2	74754596	.	A	.	.	LowGQX	END=74754719	GT	./.
chr2	74754861	.	A	.	.	LowGQX	END=74754967	GT	./.
chr2	74755051	.	C	.	.	LowGQX	END=74755150	GT	./.
chr2	74755362	.	G	.	.	LowGQX	END=74755461	GT	./.
chr2	74755531	.	A	.	.	LowGQX	END=74755584	GT	./.
chr2	74755585	.	G	.	.	LowGQX	END=74755586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74755587	.	A	.	.	LowGQX	.	GT	./.
chr2	74755588	.	C	.	.	LowGQX	END=74755611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74755612	.	A	.	.	LowGQX	.	GT	./.
chr2	74755613	.	G	.	.	LowGQX	END=74755616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74755617	.	C	.	.	LowGQX	.	GT	./.
chr2	74755618	.	T	.	.	LowGQX	END=74755622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74755623	.	G	.	.	LowGQX	.	GT	./.
chr2	74755624	.	A	.	.	LowGQX	END=74755630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74755876	.	A	.	.	LowGQX	END=74756259	GT	./.
chr2	74756260	.	G	.	.	LowGQX	END=74756263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756264	.	T	.	.	LowGQX	.	GT	./.
chr2	74756265	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756266	.	C	.	.	LowGQX	.	GT	./.
chr2	74756267	.	A	.	.	LowGQX	END=74756277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756278	.	A	.	.	LowGQX	.	GT	./.
chr2	74756279	.	A	.	.	LowGQX	END=74756281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756282	.	T	.	.	LowGQX	END=74756283	GT	./.
chr2	74756284	.	A	.	.	LowGQX	END=74756285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756286	.	T	.	.	LowGQX	.	GT	./.
chr2	74756287	.	A	.	.	LowGQX	END=74756297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756298	.	G	.	.	LowGQX	.	GT	./.
chr2	74756299	.	A	.	.	LowGQX	END=74756301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756302	.	G	.	.	LowGQX	.	GT	./.
chr2	74756303	.	G	.	.	LowGQX	END=74756306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756307	.	C	.	.	LowGQX	.	GT	./.
chr2	74756308	.	A	.	.	LowGQX	END=74756310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756311	.	T	.	.	LowGQX	.	GT	./.
chr2	74756312	.	G	.	.	LowGQX	END=74756321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756322	.	G	.	.	LowGQX	.	GT	./.
chr2	74756323	.	A	.	.	LowGQX	END=74756325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756326	.	A	.	.	LowGQX	.	GT	./.
chr2	74756327	.	C	.	.	LowGQX	END=74756336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756337	.	G	.	.	LowGQX	.	GT	./.
chr2	74756338	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756339	.	G	.	.	LowGQX	.	GT	./.
chr2	74756340	.	A	.	.	LowGQX	END=74756342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756343	.	C	.	.	LowGQX	.	GT	./.
chr2	74756344	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756345	.	G	.	.	LowGQX	.	GT	./.
chr2	74756346	.	G	.	.	LowGQX	END=74756347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756348	.	G	.	.	LowGQX	.	GT	./.
chr2	74756349	.	T	.	.	LowGQX	END=74756350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756351	.	C	.	.	LowGQX	.	GT	./.
chr2	74756352	.	G	.	.	LowGQX	END=74756359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756360	.	C	.	.	LowGQX	.	GT	./.
chr2	74756361	.	C	.	.	LowGQX	END=74756363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756364	.	C	.	.	LowGQX	END=74756365	GT	./.
chr2	74756366	.	G	.	.	LowGQX	END=74756372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756373	.	G	.	.	LowGQX	END=74756375	GT	./.
chr2	74756376	.	C	.	.	LowGQX	END=74756394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74756395	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74756396	.	T	.	.	LowGQX	END=74756472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74756473	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74756474	.	C	.	.	LowGQX	END=74756547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74756548	.	G	C	9.80	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=4.90;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,1:2:3.01:39,3,0:60:3:0.500
chr2	74756549	.	A	.	.	LowGQX	END=74756571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74756572	.	C	.	.	LowGQX	END=74756614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	74756615	.	T	.	.	LowGQX	END=74756622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	74756623	.	A	.	.	LowGQX	END=74756628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	74756705	.	A	.	.	LowGQX	END=74756726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	74756727	.	C	.	.	LowGQX	END=74756738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	74756739	.	C	.	.	LowGQX	END=74756750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	74756751	.	C	.	.	LowGQX	END=74756771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	74756772	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr2	74756773	.	G	.	.	LowGQX	END=74756786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	74756787	.	C	.	.	LowGQX	END=74756815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	74756816	.	A	.	.	LowGQX	END=74756828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74756829	.	A	.	.	LowGQX	.	GT	./.
chr2	74756830	.	A	.	.	LowGQX	END=74756846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	74756847	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	74756848	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:9:60
chr2	74757083	.	T	.	.	PASS	END=74757093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:60
chr2	74757094	.	T	.	.	PASS	END=74757118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	74757119	.	G	.	.	PASS	END=74757158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	74757159	.	G	.	.	PASS	END=74757193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:59
chr2	74757194	.	G	.	.	PASS	END=74757234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	74757235	.	C	.	.	PASS	END=74757283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	74757284	.	A	.	.	PASS	END=74757332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr2	74757333	.	A	.	.	PASS	END=74757413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr2	74757414	.	A	.	.	PASS	END=74757436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr2	74757437	.	C	.	.	PASS	END=74757463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	74757464	.	C	.	.	PASS	END=74757494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	74757495	.	T	.	.	PASS	END=74757497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	74757498	.	G	.	.	PASS	END=74757507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	74757508	.	T	.	204.55	PASS	DP=146;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:69:146:99:60:99
chr2	74757509	.	C	.	.	PASS	END=74757619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr2	74757620	.	T	.	.	PASS	END=74757663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	74757664	.	G	.	.	PASS	END=74757690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	74757693	.	G	.	.	PASS	END=74757718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	74757719	.	T	.	.	PASS	END=74757758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr2	74757759	.	C	.	.	PASS	END=74757890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr2	74757891	.	C	.	.	PASS	END=74757909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr2	74757910	.	C	.	.	PASS	END=74757936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	74757937	.	A	.	.	PASS	END=74757967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	74757968	.	A	.	.	PASS	END=74758005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	74758006	.	A	.	.	PASS	END=74758034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	74758035	.	T	.	.	PASS	END=74758058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	74758059	.	C	.	.	PASS	END=74758147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	74758148	.	T	.	.	PASS	END=74758216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	74758217	.	T	.	.	PASS	END=74758263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	74758264	.	A	.	.	PASS	END=74758283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	74758415	.	C	.	.	PASS	END=74758473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	74758474	.	C	.	.	PASS	END=74758511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	74758512	.	C	.	.	PASS	END=74758551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	74758552	.	G	.	.	PASS	END=74758562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	74758563	.	C	.	.	PASS	END=74758584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:86:60
chr2	74758585	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:69:60
chr2	74758586	.	A	.	.	PASS	END=74758629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr2	74758630	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:71:60
chr2	74758631	.	A	.	.	PASS	END=74758668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr2	74758669	.	C	.	.	PASS	END=74758687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	74758688	.	G	.	.	PASS	END=74758717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	74758718	.	C	.	.	PASS	END=74758748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	74758749	.	C	.	.	PASS	END=74758850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	74758851	.	A	.	.	PASS	END=74758880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	74758932	.	C	.	.	PASS	END=74759014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	74759015	.	C	.	.	PASS	END=74759077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	74759078	.	G	.	.	PASS	END=74759099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	74759100	.	A	.	.	PASS	END=74759103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	74759695	.	G	.	.	PASS	END=74759733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	74759734	.	G	.	.	PASS	END=74759816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr2	74759817	.	T	.	.	PASS	END=74759887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	74759888	.	T	.	.	PASS	END=74759892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	74759896	.	T	.	.	PASS	END=74759940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	74759941	.	C	.	.	PASS	END=74760050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	74760051	.	T	.	.	PASS	END=74760089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	74760090	.	T	.	.	PASS	END=74760102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	74760103	.	C	.	.	PASS	END=74760132;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr2	74760133	.	G	.	.	PASS	END=74760152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr2	74760153	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:52:60
chr2	74760154	.	C	.	.	PASS	END=74760157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr2	74760158	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:57:60
chr2	74760159	.	C	.	.	PASS	END=74760163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	74760720	.	A	.	.	LowGQX	END=74760766	GT	./.
chr2	74760767	.	C	.	.	LowGQX	END=74760777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74760778	.	C	.	.	LowGQX	.	GT	./.
chr2	74760779	.	C	.	.	LowGQX	END=74760811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74760812	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74760813	.	A	.	.	LowGQX	END=74760819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74761000	.	A	.	.	LowGQX	END=74761122	GT	./.
chr2	74761225	.	A	.	.	LowGQX	END=74761345	GT	./.
chr2	74761346	.	C	.	.	LowGQX	END=74761354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74761355	.	T	.	.	LowGQX	.	GT	./.
chr2	74761356	.	G	.	.	LowGQX	END=74761365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74761441	.	A	.	.	LowGQX	END=74761489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74761490	.	T	.	.	LowGQX	.	GT	./.
chr2	74761491	.	C	.	.	LowGQX	END=74761528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74761529	.	T	.	.	LowGQX	END=74761560	GT	./.
chr2	74761656	.	A	.	.	LowGQX	END=74761821	GT	./.
chr2	74761822	.	G	.	.	LowGQX	END=74761903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74762417	.	A	.	.	LowGQX	.	GT	./.
chr2	74762418	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762419	.	T	.	.	LowGQX	.	GT	./.
chr2	74762420	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762421	.	T	.	.	LowGQX	.	GT	./.
chr2	74762422	.	C	.	.	LowGQX	END=74762429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762430	.	A	.	.	LowGQX	END=74762431	GT	./.
chr2	74762432	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762433	.	A	.	.	LowGQX	.	GT	./.
chr2	74762434	.	C	.	.	LowGQX	END=74762435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762436	.	C	.	.	LowGQX	.	GT	./.
chr2	74762437	.	C	.	.	LowGQX	END=74762442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762443	.	T	.	.	LowGQX	.	GT	./.
chr2	74762444	.	G	.	.	LowGQX	END=74762453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762454	.	C	.	.	LowGQX	.	GT	./.
chr2	74762455	.	C	.	.	LowGQX	END=74762457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762458	.	T	.	.	LowGQX	.	GT	./.
chr2	74762459	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762460	.	C	.	.	LowGQX	END=74762461	GT	./.
chr2	74762462	.	C	.	.	LowGQX	END=74762468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762469	.	G	.	.	LowGQX	END=74762470	GT	./.
chr2	74762471	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762472	.	A	.	.	LowGQX	END=74762565	GT	./.
chr2	74762566	.	C	.	.	LowGQX	END=74762568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762569	.	A	.	.	LowGQX	END=74762571	GT	./.
chr2	74762572	.	A	.	.	LowGQX	END=74762574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762575	.	A	.	.	LowGQX	.	GT	./.
chr2	74762576	.	G	.	.	LowGQX	END=74762577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762578	.	T	.	.	LowGQX	.	GT	./.
chr2	74762579	.	C	.	.	LowGQX	END=74762582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762583	.	T	.	.	LowGQX	END=74762584	GT	./.
chr2	74762585	.	G	.	.	LowGQX	END=74762587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762588	.	A	.	.	LowGQX	.	GT	./.
chr2	74762589	.	C	.	.	LowGQX	END=74762596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762597	.	G	.	.	LowGQX	END=74762598	GT	./.
chr2	74762599	.	T	.	.	LowGQX	END=74762600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762601	.	T	.	.	LowGQX	END=74762604	GT	./.
chr2	74762605	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762606	.	G	.	.	LowGQX	END=74762608	GT	./.
chr2	74762609	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762610	.	G	.	.	LowGQX	END=74762611	GT	./.
chr2	74762612	.	C	.	.	LowGQX	END=74762616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762693	.	C	.	.	LowGQX	END=74762700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762701	.	T	.	.	LowGQX	.	GT	./.
chr2	74762702	.	C	.	.	LowGQX	END=74762715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762716	.	T	.	.	LowGQX	END=74762767	GT	./.
chr2	74762768	.	C	.	.	LowGQX	END=74762777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762778	.	C	.	.	LowGQX	.	GT	./.
chr2	74762779	.	C	.	.	LowGQX	END=74762783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762784	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr2	74762785	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762786	.	C	.	.	LowGQX	.	GT	./.
chr2	74762787	.	A	.	.	LowGQX	END=74762795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762796	.	G	.	.	LowGQX	END=74762797	GT	./.
chr2	74762798	.	T	.	.	LowGQX	END=74762800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762801	.	G	.	.	LowGQX	END=74762802	GT	./.
chr2	74762803	.	C	.	.	LowGQX	END=74762805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762806	.	C	.	.	LowGQX	.	GT	./.
chr2	74762807	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762808	.	G	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	74762809	.	C	.	.	LowGQX	END=74762812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762813	.	G	.	.	LowGQX	.	GT	./.
chr2	74762814	.	G	.	.	LowGQX	END=74762815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74762816	.	G	.	.	LowGQX	.	GT	./.
chr2	74762817	.	C	.	.	LowGQX	END=74762820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74762821	.	G	.	.	LowGQX	.	GT	./.
chr2	74762822	.	G	.	.	LowGQX	END=74762834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74762835	.	C	.	.	LowGQX	.	GT	./.
chr2	74762836	.	A	.	.	LowGQX	END=74762842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74762843	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74762844	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74762845	.	C	.	.	LowGQX	.	GT	./.
chr2	74762846	.	G	.	.	LowGQX	END=74762849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74762850	.	C	.	.	LowGQX	.	GT	./.
chr2	74762851	.	T	.	.	LowGQX	END=74762852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74762853	.	A	.	.	LowGQX	.	GT	./.
chr2	74762854	.	T	.	.	LowGQX	END=74762862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74762863	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74762864	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74762865	.	G	.	.	LowGQX	.	GT	./.
chr2	74762866	.	C	.	.	LowGQX	END=74762868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74762869	.	C	.	.	LowGQX	.	GT	./.
chr2	74762870	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74762871	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74762872	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74762873	.	T	.	.	LowGQX	.	GT	./.
chr2	74762874	.	G	.	.	LowGQX	END=74762884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74763121	.	A	.	.	LowGQX	END=74763147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74763148	.	A	.	.	LowGQX	END=74763329	GT	./.
chr2	74763416	.	A	.	.	LowGQX	END=74763600	GT	./.
chr2	74763834	.	A	.	.	LowGQX	END=74763845	GT	./.
chr2	74763846	.	G	.	.	LowGQX	END=74763911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74763912	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74763913	.	C	.	.	LowGQX	END=74763919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74763920	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74763921	.	G	.	.	LowGQX	END=74763922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74763923	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74763924	.	C	.	.	LowGQX	END=74764057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74776494	.	A	.	.	LowGQX	END=74776712	GT	./.
chr2	74777310	.	A	.	.	LowGQX	END=74777477	GT	./.
chr2	74779447	.	A	.	.	LowGQX	END=74779450	GT	./.
chr2	74779451	.	G	.	.	LowGQX	END=74779561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74779562	.	C	.	.	LowGQX	END=74779564	GT	./.
chr2	74779565	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74779566	.	A	.	.	LowGQX	.	GT	./.
chr2	74779567	.	T	.	.	LowGQX	END=74779593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74779594	.	G	.	.	LowGQX	.	GT	./.
chr2	74779595	.	C	.	.	LowGQX	END=74779601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74779602	.	A	.	.	LowGQX	END=74779763	GT	./.
chr2	74781862	.	G	.	.	LowGQX	END=74781901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74781902	.	A	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr2	74781903	.	G	.	.	LowGQX	END=74781930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr2	74781931	.	T	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr2	74781932	.	T	.	.	LowGQX	END=74781942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr2	74781943	.	T	.	36.01	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:6.02:60:6
chr2	74781944	.	A	.	.	LowGQX	END=74782016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	74782017	.	G	T	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr2	74782018	.	C	.	.	LowGQX	END=74782022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	74782279	.	A	.	.	LowGQX	END=74782291	GT	./.
chr2	74782292	.	G	.	.	LowGQX	END=74782314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74782315	.	C	.	.	LowGQX	.	GT	./.
chr2	74782316	.	C	.	.	LowGQX	END=74782342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74782343	.	G	.	.	LowGQX	.	GT	./.
chr2	74782344	.	T	.	.	LowGQX	END=74782350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74782351	.	A	.	.	LowGQX	.	GT	./.
chr2	74782352	.	C	.	.	LowGQX	END=74782364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74782365	.	A	.	.	LowGQX	.	GT	./.
chr2	74782366	.	G	.	.	LowGQX	END=74782384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74782385	.	G	.	.	LowGQX	END=74782386	GT	./.
chr2	74782387	.	G	.	.	LowGQX	END=74782403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74782404	.	T	.	.	LowGQX	.	GT	./.
chr2	74782405	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74782406	.	C	.	.	LowGQX	.	GT	./.
chr2	74782407	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74782408	.	A	.	.	LowGQX	END=74782409	GT	./.
chr2	74782410	.	G	.	.	LowGQX	END=74782411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74782412	.	G	.	.	LowGQX	.	GT	./.
chr2	74782413	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74782414	.	T	.	.	LowGQX	.	GT	./.
chr2	74782415	.	C	.	.	LowGQX	END=74782417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74782418	.	T	.	.	LowGQX	END=74782419	GT	./.
chr2	74782420	.	T	.	.	LowGQX	END=74782424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74782425	.	G	.	.	LowGQX	.	GT	./.
chr2	74782426	.	A	.	.	LowGQX	END=74782427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74782428	.	T	.	.	LowGQX	END=74782429	GT	./.
chr2	74782430	.	T	.	.	LowGQX	END=74782434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74782435	.	G	.	.	LowGQX	.	GT	./.
chr2	74782436	.	T	.	.	LowGQX	END=74782438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74782439	.	G	.	.	LowGQX	.	GT	./.
chr2	74782440	.	G	.	.	LowGQX	END=74782441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74782442	.	C	.	.	LowGQX	END=74782582	GT	./.
chr2	74782699	.	C	.	.	LowGQX	END=74782704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74782705	.	G	.	.	LowGQX	END=74782706	GT	./.
chr2	74782707	.	C	.	.	LowGQX	END=74782741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74782742	.	A	.	.	LowGQX	.	GT	./.
chr2	74782743	.	G	.	.	LowGQX	END=74782745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74782746	.	T	.	.	LowGQX	END=74782798	GT	./.
chr2	74783019	.	A	.	.	LowGQX	END=74783207	GT	./.
chr2	74783433	.	A	.	.	LowGQX	END=74783447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74783448	.	T	.	.	LowGQX	END=74783560	GT	./.
chr2	74783561	.	G	.	.	LowGQX	END=74783678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74783679	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	74783680	.	G	.	.	LowGQX	END=74783702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	74783703	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	74783704	.	G	.	.	LowGQX	END=74783712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74783713	.	T	.	.	LowGQX	.	GT	./.
chr2	74783714	.	C	.	.	LowGQX	END=74783742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74783743	.	A	.	.	LowGQX	END=74784034	GT	./.
chr2	74784035	.	C	.	.	LowGQX	END=74784182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74784183	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	74784184	.	T	.	.	LowGQX	END=74784243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74785811	.	A	.	.	LowGQX	END=74786003	GT	./.
chr2	74786781	.	T	.	.	LowGQX	END=74786811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74786812	.	A	.	.	LowGQX	END=74786880	GT	./.
chr2	74787236	.	G	.	.	LowGQX	END=74787420	GT	./.
chr2	74789342	.	G	.	.	LowGQX	END=74789552	GT	./.
chr2	74802541	.	T	.	.	LowGQX	END=74802708	GT	./.
chr2	74803581	.	A	.	.	LowGQX	END=74803705	GT	./.
chr2	74803706	.	G	.	.	LowGQX	END=74803747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74808799	.	A	.	.	LowGQX	END=74808930	GT	./.
chr2	74808931	.	G	.	.	LowGQX	END=74808976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74834180	.	A	.	.	LowGQX	END=74834352	GT	./.
chr2	74842089	.	A	.	.	LowGQX	END=74842100	GT	./.
chr2	74842101	.	G	.	.	LowGQX	END=74842109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842110	.	A	.	.	LowGQX	.	GT	./.
chr2	74842111	.	G	.	.	LowGQX	END=74842121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842122	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	74842123	.	T	.	.	LowGQX	END=74842131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842132	.	G	.	.	LowGQX	.	GT	./.
chr2	74842133	.	T	.	.	LowGQX	END=74842142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842143	.	T	.	.	LowGQX	.	GT	./.
chr2	74842144	.	G	.	.	LowGQX	END=74842148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842149	.	A	.	.	LowGQX	.	GT	./.
chr2	74842150	.	A	.	.	LowGQX	END=74842156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842157	.	G	.	.	LowGQX	.	GT	./.
chr2	74842158	.	A	.	.	LowGQX	END=74842161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842162	.	C	.	.	LowGQX	.	GT	./.
chr2	74842163	.	A	.	.	LowGQX	END=74842165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842166	.	C	.	.	LowGQX	.	GT	./.
chr2	74842167	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842168	.	C	.	.	LowGQX	.	GT	./.
chr2	74842169	.	T	.	.	LowGQX	END=74842176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842177	.	G	.	.	LowGQX	END=74842178	GT	./.
chr2	74842179	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842180	.	G	.	.	LowGQX	.	GT	./.
chr2	74842181	.	C	.	.	LowGQX	END=74842184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842185	.	G	.	.	LowGQX	.	GT	./.
chr2	74842186	.	A	.	.	LowGQX	END=74842192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842193	.	T	.	.	LowGQX	END=74842194	GT	./.
chr2	74842195	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842196	.	T	.	.	LowGQX	.	GT	./.
chr2	74842197	.	G	.	.	LowGQX	END=74842198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842199	.	T	.	.	LowGQX	END=74842200	GT	./.
chr2	74842201	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842202	.	G	.	.	LowGQX	.	GT	./.
chr2	74842203	.	A	.	.	LowGQX	END=74842204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842205	.	A	.	.	LowGQX	.	GT	./.
chr2	74842206	.	C	.	.	LowGQX	END=74842208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842209	.	C	.	.	LowGQX	.	GT	./.
chr2	74842210	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842211	.	T	.	.	LowGQX	.	GT	./.
chr2	74842212	.	T	.	.	LowGQX	END=74842213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842214	.	T	.	.	LowGQX	.	GT	./.
chr2	74842215	.	C	.	.	LowGQX	END=74842217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842218	.	T	.	.	LowGQX	.	GT	./.
chr2	74842219	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842220	.	T	.	.	LowGQX	.	GT	./.
chr2	74842221	.	A	.	.	LowGQX	END=74842230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842231	.	G	.	.	LowGQX	.	GT	./.
chr2	74842232	.	T	.	.	LowGQX	END=74842251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74842252	.	A	.	.	LowGQX	END=74842278	GT	./.
chr2	74867161	.	A	.	.	LowGQX	END=74867181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74867182	.	T	.	.	LowGQX	.	GT	./.
chr2	74867183	.	C	.	.	LowGQX	END=74867190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74867191	.	T	.	.	LowGQX	.	GT	./.
chr2	74867192	.	C	.	.	LowGQX	END=74867200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74867201	.	T	.	.	LowGQX	.	GT	./.
chr2	74867202	.	G	.	.	LowGQX	END=74867236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74867237	.	T	.	.	LowGQX	.	GT	./.
chr2	74867238	.	C	.	.	LowGQX	END=74867241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74867242	.	C	.	.	LowGQX	END=74867404	GT	./.
chr2	74881471	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74881472	.	T	.	.	LowGQX	END=74881650	GT	./.
chr2	74882374	.	T	.	.	LowGQX	END=74882473	GT	./.
chr2	74883659	.	A	.	.	LowGQX	END=74883708	GT	./.
chr2	74883709	.	A	.	.	LowGQX	END=74883715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74883716	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74883717	.	C	.	.	LowGQX	END=74883814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74884672	.	G	.	.	LowGQX	END=74884771	GT	./.
chr2	74884978	.	A	.	.	LowGQX	END=74885080	GT	./.
chr2	74889856	.	T	.	.	LowGQX	END=74889929	GT	./.
chr2	74889930	.	G	.	.	LowGQX	END=74889951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74889952	.	G	.	.	LowGQX	.	GT	./.
chr2	74889953	.	G	.	.	LowGQX	END=74889955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900582	.	A	.	.	LowGQX	END=74900705	GT	./.
chr2	74900802	.	A	.	.	LowGQX	END=74900805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900806	.	C	.	.	LowGQX	.	GT	./.
chr2	74900807	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900808	.	A	.	.	LowGQX	.	GT	./.
chr2	74900809	.	G	.	.	LowGQX	END=74900812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900813	.	T	.	.	LowGQX	.	GT	./.
chr2	74900814	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900815	.	G	.	.	LowGQX	END=74900816	GT	./.
chr2	74900817	.	C	.	.	LowGQX	END=74900819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900820	.	A	.	.	LowGQX	.	GT	./.
chr2	74900821	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900822	.	C	.	.	LowGQX	.	GT	./.
chr2	74900823	.	C	.	.	LowGQX	END=74900829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900830	.	T	.	.	LowGQX	.	GT	./.
chr2	74900831	.	T	.	.	LowGQX	END=74900834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900835	.	C	.	.	LowGQX	.	GT	./.
chr2	74900836	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900837	.	C	.	.	LowGQX	.	GT	./.
chr2	74900838	.	A	.	.	LowGQX	END=74900841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900842	.	G	.	.	LowGQX	.	GT	./.
chr2	74900843	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900844	.	A	.	.	LowGQX	.	GT	./.
chr2	74900845	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900846	.	G	.	.	LowGQX	.	GT	./.
chr2	74900847	.	G	.	.	LowGQX	END=74900852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900853	.	T	.	.	LowGQX	.	GT	./.
chr2	74900854	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900855	.	A	.	.	LowGQX	.	GT	./.
chr2	74900856	.	A	.	.	LowGQX	END=74900858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900859	.	T	.	.	LowGQX	.	GT	./.
chr2	74900860	.	G	.	.	LowGQX	END=74900863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900864	.	A	.	.	LowGQX	.	GT	./.
chr2	74900865	.	C	.	.	LowGQX	END=74900866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900867	.	A	.	.	LowGQX	.	GT	./.
chr2	74900868	.	C	.	.	LowGQX	END=74900869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900870	.	A	.	.	LowGQX	END=74900872	GT	./.
chr2	74900873	.	T	.	.	LowGQX	END=74900874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900875	.	T	.	.	LowGQX	END=74900876	GT	./.
chr2	74900877	.	C	.	.	LowGQX	END=74900881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900882	.	T	.	.	LowGQX	END=74900883	GT	./.
chr2	74900884	.	T	.	.	LowGQX	END=74900890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900891	.	A	.	.	LowGQX	.	GT	./.
chr2	74900892	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900893	.	A	.	.	LowGQX	END=74900894	GT	./.
chr2	74900895	.	T	.	.	LowGQX	END=74900897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900898	.	C	.	.	LowGQX	.	GT	./.
chr2	74900899	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900900	.	G	.	.	LowGQX	END=74900902	GT	./.
chr2	74900903	.	C	.	.	LowGQX	END=74900908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74900909	.	A	.	.	LowGQX	END=74900934	GT	./.
chr2	74900935	.	C	.	.	LowGQX	END=74900957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74901623	.	A	.	.	LowGQX	END=74901805	GT	./.
chr2	74902013	.	A	.	.	LowGQX	END=74902164	GT	./.
chr2	74902287	.	A	.	.	LowGQX	END=74902513	GT	./.
chr2	74902650	.	A	.	.	LowGQX	END=74902688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74902689	.	T	.	.	LowGQX	END=74902763	GT	./.
chr2	74902874	.	A	.	.	LowGQX	END=74903038	GT	./.
chr2	74906383	.	A	.	.	LowGQX	END=74906482	GT	./.
chr2	74906724	.	A	.	.	LowGQX	END=74906762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74906763	.	T	.	.	LowGQX	END=74906784	GT	./.
chr2	74906785	.	T	.	.	LowGQX	END=74906787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74906788	.	C	.	.	LowGQX	.	GT	./.
chr2	74906789	.	C	.	.	LowGQX	END=74906790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74906791	.	A	.	.	LowGQX	.	GT	./.
chr2	74906792	.	G	.	.	LowGQX	END=74906802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74906803	.	G	.	.	LowGQX	.	GT	./.
chr2	74906804	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74906805	.	A	.	.	LowGQX	.	GT	./.
chr2	74906806	.	T	.	.	LowGQX	END=74906807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74906808	.	C	.	.	LowGQX	.	GT	./.
chr2	74906809	.	T	.	.	LowGQX	END=74906818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74906819	.	A	.	.	LowGQX	.	GT	./.
chr2	74906820	.	C	.	.	LowGQX	END=74906834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74906835	.	G	.	.	LowGQX	.	GT	./.
chr2	74906836	.	A	.	.	LowGQX	END=74906874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74906875	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	74906876	.	T	.	.	LowGQX	END=74906926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	74906927	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	74906928	.	A	.	.	LowGQX	END=74907019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74907020	.	T	.	.	LowGQX	.	GT	./.
chr2	74907021	.	C	.	.	LowGQX	END=74907030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74907031	.	A	.	.	LowGQX	.	GT	./.
chr2	74907032	.	T	.	.	LowGQX	END=74907035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74907036	.	C	.	.	LowGQX	END=74907042	GT	./.
chr2	74907043	.	T	.	.	LowGQX	END=74907065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74907066	.	T	.	.	LowGQX	.	GT	./.
chr2	74907067	.	C	.	.	LowGQX	END=74907070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74907071	.	G	.	.	LowGQX	END=74907072	GT	./.
chr2	74907073	.	C	.	.	LowGQX	END=74907095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74907096	.	A	.	.	LowGQX	.	GT	./.
chr2	74907097	.	C	.	.	LowGQX	END=74907100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74907101	.	T	.	.	LowGQX	.	GT	./.
chr2	74907102	.	G	.	.	LowGQX	END=74907134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74907135	.	T	.	.	LowGQX	.	GT	./.
chr2	74907136	.	C	.	.	LowGQX	END=74907192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	74907193	.	G	.	.	LowGQX	END=74907338	GT	./.
chr2	75061657	.	C	.	.	PASS	END=75061675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:60
chr2	75061676	.	T	.	.	PASS	END=75061677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:60:60
chr2	75061678	.	C	.	.	PASS	END=75061692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:75:60
chr2	75061693	.	T	.	.	PASS	END=75061697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:69:60
chr2	75061698	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:48:60
chr2	75061699	.	C	.	.	PASS	END=75061702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr2	75061703	.	G	.	.	PASS	END=75061720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr2	75061721	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:54:60
chr2	75061722	.	T	.	.	PASS	END=75061777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:60
chr2	75061778	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:72:60
chr2	75061779	.	G	.	.	PASS	END=75061790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr2	75061791	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:49:60
chr2	75061792	.	G	.	.	PASS	END=75061794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr2	75061795	.	A	.	.	PASS	END=75061797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr2	75061798	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:43:60
chr2	75061799	.	T	.	.	PASS	END=75061802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr2	75061803	.	C	.	.	PASS	END=75061804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:63:60
chr2	75061805	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:34:24:60
chr2	75061806	.	T	.	.	PASS	END=75061807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr2	75061808	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:30:60
chr2	75061809	.	C	.	.	PASS	END=75061814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:54:60
chr2	75061815	.	G	.	.	PASS	END=75061816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr2	75061817	.	T	.	.	PASS	END=75061821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:54:60
chr2	75081369	.	C	.	.	PASS	END=75081396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	75081397	.	C	.	.	PASS	END=75081427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	75081428	.	G	.	.	PASS	END=75081435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	75081436	.	A	.	.	PASS	END=75081447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	75081448	.	T	.	.	PASS	END=75081576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr2	75081577	.	G	.	.	PASS	END=75081590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	75081591	.	T	.	.	PASS	END=75081599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	75081600	.	T	.	.	PASS	END=75081614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	75081615	.	C	.	.	PASS	END=75081633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	75094712	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:99:60
chr2	75094713	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:66:60
chr2	75094714	.	C	.	.	PASS	END=75094736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	75094737	.	A	.	.	PASS	END=75094779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	75094780	.	G	.	.	PASS	END=75094831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	75094832	.	A	.	.	PASS	END=75094918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	75094919	.	C	.	.	PASS	END=75094936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	75094937	.	C	.	.	PASS	END=75094951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	75094952	.	C	.	.	PASS	END=75094962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	75099376	.	C	.	.	PASS	END=75099387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr2	75099388	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:38:23:60
chr2	75099389	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:93:60
chr2	75099390	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:69:60
chr2	75099391	.	C	.	.	PASS	END=75099401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr2	75099402	.	A	.	.	PASS	END=75099403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	75099404	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:64:60
chr2	75099405	.	A	.	.	PASS	END=75099421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	75099422	.	C	.	.	PASS	END=75099550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:95:60
chr2	75099551	.	G	.	.	PASS	END=75099559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	75099560	.	C	.	.	PASS	END=75099571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	75099572	.	T	.	.	PASS	END=75099581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr2	75099582	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:51:60
chr2	75099583	.	T	.	.	PASS	END=75099590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	75099591	.	G	.	.	PASS	END=75099597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	75100352	.	G	.	.	PASS	END=75100405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	75100406	.	T	.	.	PASS	END=75100458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	75100459	.	C	.	.	PASS	END=75100492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	75100493	.	A	.	.	PASS	END=75100524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr2	75100525	.	T	.	.	PASS	END=75100539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr2	75100540	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:57:60
chr2	75100541	.	G	.	.	PASS	END=75100548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr2	75100549	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:75:60
chr2	75100920	.	A	.	.	PASS	END=75100931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr2	75100932	.	T	.	.	PASS	END=75100947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	75100948	.	A	.	.	PASS	END=75101004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:82:60
chr2	75101005	.	A	.	.	PASS	END=75101079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	75101080	.	C	.	.	PASS	END=75101092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	75101093	.	G	.	.	PASS	END=75101121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:87:60
chr2	75101342	.	G	.	.	PASS	END=75101360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr2	75101361	.	G	.	.	PASS	END=75101399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	75101400	.	C	.	.	PASS	END=75101482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	75101483	.	G	.	.	PASS	END=75101510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	75101511	.	C	.	.	PASS	END=75101531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr2	75101532	.	T	.	.	PASS	END=75101553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:60
chr2	75101554	.	T	.	.	PASS	END=75101555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr2	75101556	.	A	.	.	PASS	END=75101560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr2	75101561	.	A	.	.	PASS	END=75101582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	75101583	.	A	.	.	PASS	END=75101594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:59
chr2	75101595	.	T	.	.	PASS	END=75101599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:59
chr2	75101600	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:51:59
chr2	75101601	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:59
chr2	75101602	.	G	.	.	PASS	END=75101604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:59
chr2	75101605	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:59
chr2	75101606	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:33:59
chr2	75101607	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:3:59
chr2	75101608	.	G	.	.	PASS	END=75101609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:59
chr2	75101610	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:59
chr2	75101611	.	G	.	.	PASS	END=75101614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:59
chr2	75101615	.	G	.	.	PASS	END=75101616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:59
chr2	75101617	.	C	.	.	LowGQX	END=75101618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:59
chr2	75101619	.	G	.	.	PASS	END=75101625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:59
chr2	75101626	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:59
chr2	75101627	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:33:59
chr2	75104242	.	G	.	.	PASS	END=75104299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	75104300	.	A	.	.	PASS	END=75104362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	75104363	.	G	.	.	PASS	END=75104386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	75104387	.	C	.	.	PASS	END=75104409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	75104410	.	C	.	.	PASS	END=75104449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:89:60
chr2	75104450	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:75:60
chr2	75104451	.	G	.	.	PASS	END=75104466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr2	75104467	.	C	.	.	PASS	END=75104474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr2	75104475	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:63:60
chr2	75104476	.	T	.	.	PASS	END=75104479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:96:60
chr2	75104480	.	G	.	.	PASS	END=75104482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr2	75104483	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:30:60
chr2	75104484	.	C	.	.	PASS	END=75104499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr2	75105764	.	T	.	.	PASS	END=75105774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	75105775	.	G	.	.	PASS	END=75105787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	75105788	.	C	.	.	PASS	END=75105797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	75105798	.	A	G	4186.07	PASS	DP=134;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=12.4556;MQ=60;MQ0=0;QD=31.24;SB=-844.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,132:134:99:4186,325,0:60:99:1.000
chr2	75105799	.	T	.	.	PASS	END=75105845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	75105846	.	G	.	.	PASS	END=75105872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr2	75105873	.	A	.	.	PASS	END=75106045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr2	75106046	.	C	.	.	PASS	END=75106066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr2	75106067	.	C	.	.	PASS	END=75106084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	75106085	.	C	.	.	PASS	END=75106099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	75107341	.	A	.	.	PASS	END=75107344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr2	75107345	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:75:60
chr2	75107346	.	C	.	.	PASS	END=75107363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	75107364	.	G	.	.	PASS	END=75107395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	75107396	.	G	.	.	PASS	END=75107406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	75107407	.	A	.	.	PASS	END=75107445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	75107446	.	C	.	.	PASS	END=75107479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	75107480	.	G	.	.	PASS	END=75107518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr2	75107519	.	G	.	.	PASS	END=75107610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:60
chr2	75107611	.	G	.	.	PASS	END=75107642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr2	75107643	.	G	.	.	PASS	END=75107670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	75107671	.	C	.	.	PASS	END=75107684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	75107685	.	C	.	.	PASS	END=75107700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	75107701	.	A	.	.	PASS	END=75107714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	75107715	.	A	.	.	PASS	END=75107747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	75108787	.	C	.	.	PASS	END=75108801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:60
chr2	75108802	.	G	.	.	PASS	END=75108854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	75108855	.	G	.	.	PASS	END=75108932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	75108933	.	C	.	.	PASS	END=75108971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:93:60
chr2	75108972	.	G	.	.	PASS	END=75109002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	75109003	.	C	.	.	PASS	END=75109024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr2	75109025	.	G	.	.	PASS	END=75109028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr2	75109029	.	T	.	.	PASS	END=75109037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr2	75109196	.	A	.	.	PASS	END=75109220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	75109221	.	C	.	.	PASS	END=75109256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	75109257	.	A	.	.	PASS	END=75109300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:59
chr2	75109301	.	A	.	.	PASS	END=75109364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:59
chr2	75109365	.	A	.	.	PASS	END=75109386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	75109387	.	G	.	.	PASS	END=75109407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	75109408	.	G	.	.	PASS	END=75109416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	75109417	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:69:60
chr2	75112570	.	A	.	.	PASS	END=75112622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	75112623	.	C	.	.	PASS	END=75112683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	75112684	.	A	.	.	PASS	END=75112714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	75112715	.	A	.	.	PASS	END=75112733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr2	75112734	.	C	.	.	PASS	END=75112747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr2	75112748	.	T	.	.	PASS	END=75112749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:60
chr2	75112750	.	A	.	.	PASS	END=75112751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr2	75112752	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:45:60
chr2	75112753	.	T	.	.	PASS	END=75112767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr2	75113370	.	G	.	.	PASS	END=75113407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:97:60
chr2	75113408	.	T	.	.	PASS	END=75113459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	75113460	.	G	.	.	PASS	END=75113571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	75113572	.	G	A	1130.84	PASS	BaseQRankSum=3.689;DP=85;Dels=0.00;FS=0.814;HRun=1;HaplotypeScore=2.8832;MQ=60;MQ0=0;MQRankSum=0.805;QD=13.30;ReadPosRankSum=2.309;SB=-609.47	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,41:85:99:1161,0,1178:60:99:0.482
chr2	75113573	.	A	.	.	PASS	END=75113656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	75113657	.	C	T	1152.66	PASS	BaseQRankSum=1.378;DP=82;Dels=0.00;FS=0.917;HRun=0;HaplotypeScore=9.4692;MQ=60;MQ0=0;MQRankSum=0.596;QD=14.06;ReadPosRankSum=1.444;SB=-603.28	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:35,46:82:99:1183,0,861:60:99:0.568
chr2	75113658	.	G	.	.	PASS	END=75113691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	75113692	.	G	.	.	PASS	END=75113782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	75113783	.	C	.	.	PASS	END=75113788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	75113789	.	C	G	875.93	PASS	BaseQRankSum=0.663;DP=87;Dels=0.00;FS=4.759;HRun=2;HaplotypeScore=11.4153;MQ=60;MQ0=0;MQRankSum=-0.840;QD=10.07;ReadPosRankSum=-0.227;SB=-229.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:49,36:87:99:906,0,1249:60:99:0.424
chr2	75113790	.	G	.	.	PASS	END=75113811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	75113812	.	A	.	.	PASS	END=75113829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	75113830	.	G	.	.	PASS	END=75113832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr2	75113833	.	T	.	.	PASS	END=75113838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr2	75113839	.	G	.	.	PASS	END=75113841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr2	75113842	.	T	.	.	PASS	END=75113847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr2	75113848	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:63:60
chr2	75113849	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:39:60
chr2	75113850	.	A	.	.	PASS	END=75113851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	75114979	.	A	.	.	PASS	END=75115001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	75115002	.	A	.	.	PASS	END=75115051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	75115052	.	A	.	.	PASS	END=75115107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr2	75115108	.	A	G	1773.44	PASS	BaseQRankSum=1.424;DP=144;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=16.3081;MQ=60;MQ0=0;MQRankSum=-1.194;QD=12.32;ReadPosRankSum=0.289;SB=-1090.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:69,74:144:99:1803,0,1698:60:99:0.517
chr2	75115109	.	C	.	.	PASS	END=75115133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	75115134	.	G	.	.	PASS	END=75115186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	75115187	.	T	.	.	PASS	END=75115201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	75115202	.	C	.	.	PASS	END=75115209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	75115210	.	C	.	.	PASS	END=75115212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	75115213	.	G	.	.	PASS	END=75115220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr2	75115221	.	T	.	.	PASS	END=75115236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	75116321	.	C	.	.	PASS	END=75116337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:90:60
chr2	75116338	.	T	.	.	PASS	END=75116365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	75116366	.	C	.	.	PASS	END=75116402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	75116403	.	A	.	.	PASS	END=75116448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:59
chr2	75116449	.	T	.	.	PASS	END=75116511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:59
chr2	75116512	.	C	.	.	PASS	END=75116535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	75116536	.	A	.	.	PASS	END=75116568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	75116569	.	T	.	.	PASS	END=75116593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr2	75116594	.	G	.	.	PASS	END=75116602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:99:60
chr2	75116603	.	T	.	.	PASS	END=75116608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr2	75116609	.	A	.	.	PASS	END=75116613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	75116614	.	C	.	.	PASS	END=75116626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr2	75116627	.	C	T	203.07	SB	BaseQRankSum=-0.637;DP=15;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=-1.794;QD=13.54;ReadPosRankSum=0.405;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:8,7:15:99:233,0,233:60:99:0.467
chr2	75116628	.	C	.	.	PASS	END=75116656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	75117873	.	C	.	.	PASS	END=75117887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:82:60
chr2	75117888	.	A	.	.	PASS	END=75117923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	75117924	.	C	.	.	PASS	END=75118028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	75118029	.	T	.	.	PASS	END=75118060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	75118061	.	A	.	.	PASS	END=75118062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr2	75118063	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:66:60
chr2	75118064	.	G	.	.	PASS	END=75118069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr2	75118070	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:59:60
chr2	75118071	.	C	.	.	PASS	END=75118078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr2	75118079	.	A	.	.	PASS	END=75118084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:66:60
chr2	75118085	.	A	.	.	PASS	END=75118100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr2	75118101	.	T	.	.	PASS	END=75118119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	75185770	.	A	.	.	LowGQX	END=75186021	GT	./.
chr2	75186461	.	T	.	.	LowGQX	END=75186560	GT	./.
chr2	75187203	.	G	.	.	LowGQX	END=75187302	GT	./.
chr2	75187674	.	A	.	.	LowGQX	END=75187728	GT	./.
chr2	75187729	.	A	.	.	LowGQX	END=75187773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	75196493	.	T	.	.	LowGQX	END=75196592	GT	./.
chr2	75276557	.	G	.	.	LowGQX	END=75276576	GT	./.
chr2	75276577	.	G	.	.	LowGQX	END=75276581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75276582	.	A	.	.	LowGQX	.	GT	./.
chr2	75276583	.	G	.	.	LowGQX	END=75276738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75276739	.	C	.	.	LowGQX	.	GT	./.
chr2	75276740	.	A	.	.	LowGQX	END=75276764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75276765	.	G	.	.	LowGQX	END=75276852	GT	./.
chr2	75278373	.	C	.	.	LowGQX	END=75278576	GT	./.
chr2	75280730	.	A	.	.	LowGQX	END=75280938	GT	./.
chr2	75347698	.	A	.	.	LowGQX	END=75347896	GT	./.
chr2	75425670	.	A	.	.	LowGQX	END=75426062	GT	./.
chr2	75720360	.	C	.	.	LowGQX	END=75720737	GT	./.
chr2	75744913	.	A	.	.	LowGQX	END=75744917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	75744918	.	T	C	14.91	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	75744919	.	G	.	.	LowGQX	END=75745002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	75745003	.	A	.	.	LowGQX	.	GT	./.
chr2	75745004	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75745005	.	G	.	.	LowGQX	.	GT	./.
chr2	75745006	.	A	.	.	LowGQX	END=75745012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75745175	.	C	.	.	LowGQX	END=75745268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75745269	.	G	.	.	LowGQX	END=75745274	GT	./.
chr2	75873932	.	G	.	.	LowGQX	END=75874038	GT	./.
chr2	75874226	.	A	.	.	LowGQX	END=75874347	GT	./.
chr2	75879266	.	A	.	.	LowGQX	END=75879435	GT	./.
chr2	75879647	.	A	.	.	LowGQX	END=75879654	GT	./.
chr2	75879655	.	T	.	.	LowGQX	END=75879727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75879728	.	A	.	.	LowGQX	.	GT	./.
chr2	75879729	.	T	.	.	LowGQX	END=75879785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75881860	.	A	.	.	LowGQX	END=75882045	GT	./.
chr2	75882188	.	A	.	.	LowGQX	END=75882413	GT	./.
chr2	75891790	.	A	.	.	LowGQX	END=75891911	GT	./.
chr2	75893053	.	A	.	.	LowGQX	END=75893130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	75893131	.	T	.	.	LowGQX	END=75893181	GT	./.
chr2	75897262	.	A	.	.	LowGQX	END=75897412	GT	./.
chr2	75899060	.	T	.	.	LowGQX	END=75899159	GT	./.
chr2	75900508	.	T	.	.	LowGQX	END=75900528	GT	./.
chr2	75900529	.	G	.	.	LowGQX	END=75900546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75900547	.	A	.	.	LowGQX	.	GT	./.
chr2	75900548	.	T	.	.	LowGQX	END=75900550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75900551	.	A	.	.	LowGQX	.	GT	./.
chr2	75900552	.	G	.	.	LowGQX	END=75900559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75900560	.	C	.	.	LowGQX	END=75900561	GT	./.
chr2	75900562	.	G	.	.	LowGQX	END=75900569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75900570	.	C	.	.	LowGQX	.	GT	./.
chr2	75900571	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75900572	.	C	.	.	LowGQX	END=75900573	GT	./.
chr2	75900574	.	T	.	.	LowGQX	END=75900616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75900617	.	C	.	.	LowGQX	.	GT	./.
chr2	75900618	.	A	.	.	LowGQX	END=75900631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75900632	.	G	.	.	LowGQX	.	GT	./.
chr2	75900633	.	G	.	.	LowGQX	END=75900639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75900640	.	G	.	.	LowGQX	.	GT	./.
chr2	75900641	.	T	.	.	LowGQX	END=75900658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75907317	.	A	.	.	LowGQX	END=75907442	GT	./.
chr2	75914921	.	A	.	.	LowGQX	END=75914947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	75914948	.	A	.	.	LowGQX	END=75915105	GT	./.
chr2	75916080	.	C	.	.	LowGQX	END=75916086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75916087	.	A	.	.	LowGQX	END=75916419	GT	./.
chr2	75917043	.	T	.	.	LowGQX	END=75917209	GT	./.
chr2	75917702	.	T	.	.	LowGQX	END=75917854	GT	./.
chr2	75919101	.	A	.	.	LowGQX	END=75919228	GT	./.
chr2	75921365	.	A	.	.	LowGQX	END=75921555	GT	./.
chr2	75923324	.	A	.	.	LowGQX	END=75923493	GT	./.
chr2	75928314	.	A	.	.	LowGQX	END=75928415	GT	./.
chr2	75929295	.	C	.	.	LowGQX	END=75929551	GT	./.
chr2	75933647	.	A	.	.	LowGQX	END=75933718	GT	./.
chr2	75933719	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75933720	.	T	.	.	LowGQX	.	GT	./.
chr2	75933721	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75933722	.	T	.	.	LowGQX	.	GT	./.
chr2	75933723	.	G	.	.	LowGQX	END=75933726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75933727	.	A	.	.	LowGQX	.	GT	./.
chr2	75933728	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75933729	.	T	.	.	LowGQX	.	GT	./.
chr2	75933730	.	G	.	.	LowGQX	END=75933739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75933740	.	A	.	.	LowGQX	.	GT	./.
chr2	75933741	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75933742	.	C	.	.	LowGQX	.	GT	./.
chr2	75933743	.	C	.	.	LowGQX	END=75933744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75933745	.	C	.	.	LowGQX	.	GT	./.
chr2	75933746	.	T	.	.	LowGQX	END=75933752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75933753	.	G	.	.	LowGQX	.	GT	./.
chr2	75933754	.	T	.	.	LowGQX	END=75933755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75933756	.	G	.	.	LowGQX	.	GT	./.
chr2	75933757	.	A	.	.	LowGQX	END=75933759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75933760	.	C	.	.	LowGQX	.	GT	./.
chr2	75933761	.	A	.	.	LowGQX	END=75933764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75933765	.	A	.	.	LowGQX	.	GT	./.
chr2	75933766	.	G	.	.	LowGQX	END=75933768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75933769	.	T	.	.	LowGQX	END=75933771	GT	./.
chr2	75933772	.	T	.	.	LowGQX	END=75933779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	75937704	.	T	.	.	LowGQX	END=75937983	GT	./.
chr2	76975820	.	G	.	.	LowGQX	END=76976042	GT	./.
chr2	77745437	.	T	.	.	LowGQX	END=77745547	GT	./.
chr2	77745548	.	C	.	.	LowGQX	END=77745571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	77745572	.	T	.	.	LowGQX	.	GT	./.
chr2	77745573	.	T	.	.	LowGQX	END=77745579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	77745580	.	T	.	.	LowGQX	.	GT	./.
chr2	77745581	.	C	.	.	LowGQX	END=77745601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	77745602	.	T	.	.	LowGQX	END=77745603	GT	./.
chr2	77745604	.	T	.	.	LowGQX	END=77745617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	77745618	.	T	.	.	LowGQX	.	GT	./.
chr2	77745619	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	77745620	.	G	.	.	LowGQX	.	GT	./.
chr2	77745621	.	C	.	.	LowGQX	END=77745637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	77745638	.	T	.	.	LowGQX	.	GT	./.
chr2	77745639	.	G	.	.	LowGQX	END=77745665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	77745666	.	G	.	.	LowGQX	.	GT	./.
chr2	77745667	.	A	.	.	LowGQX	END=77745711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	77745712	.	C	.	.	LowGQX	.	GT	./.
chr2	77745713	.	C	.	.	LowGQX	END=77745714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	77745715	.	G	.	.	LowGQX	.	GT	./.
chr2	77745716	.	C	.	.	LowGQX	END=77745757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	77745758	.	C	.	.	LowGQX	.	GT	./.
chr2	77745759	.	G	.	.	LowGQX	END=77745772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	77745773	.	A	.	.	LowGQX	END=77745774	GT	./.
chr2	77745775	.	C	.	.	LowGQX	END=77745784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	77745785	.	G	.	.	LowGQX	.	GT	./.
chr2	77745786	.	G	.	.	LowGQX	END=77745793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	77745794	.	T	.	.	LowGQX	END=77746990	GT	./.
chr2	77748746	.	C	.	.	LowGQX	END=77748845	GT	./.
chr2	77749188	.	C	.	.	LowGQX	END=77749287	GT	./.
chr2	79253208	.	G	.	.	LowGQX	END=79253289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79253290	.	T	.	.	LowGQX	.	GT	./.
chr2	79253291	.	T	.	.	LowGQX	END=79253300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79253301	.	A	.	.	LowGQX	.	GT	./.
chr2	79253302	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79253303	.	T	.	.	LowGQX	.	GT	./.
chr2	79253304	.	T	.	.	LowGQX	END=79253307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79253837	.	A	.	.	LowGQX	END=79253890	GT	./.
chr2	79253891	.	C	.	.	LowGQX	END=79253959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79254158	.	A	.	.	LowGQX	END=79254299	GT	./.
chr2	79254931	.	A	.	.	LowGQX	END=79255061	GT	./.
chr2	79255319	.	T	.	.	LowGQX	END=79255418	GT	./.
chr2	79312324	.	T	.	.	LowGQX	END=79312423	GT	./.
chr2	79312532	.	C	.	.	LowGQX	END=79312574	GT	./.
chr2	79312575	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312576	.	G	.	.	LowGQX	END=79312578	GT	./.
chr2	79312579	.	A	.	.	LowGQX	END=79312580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312581	.	G	.	.	LowGQX	END=79312582	GT	./.
chr2	79312583	.	A	.	.	LowGQX	END=79312586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312587	.	G	.	.	LowGQX	END=79312588	GT	./.
chr2	79312589	.	A	.	.	LowGQX	END=79312590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312591	.	C	.	.	LowGQX	.	GT	./.
chr2	79312592	.	A	.	.	LowGQX	END=79312593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312594	.	G	.	.	LowGQX	END=79312596	GT	./.
chr2	79312597	.	G	.	.	LowGQX	END=79312599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312600	.	A	.	.	LowGQX	END=79312601	GT	./.
chr2	79312602	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312603	.	T	.	.	LowGQX	.	GT	./.
chr2	79312604	.	T	.	.	LowGQX	END=79312605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312606	.	T	.	.	LowGQX	.	GT	./.
chr2	79312607	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312608	.	T	.	.	LowGQX	END=79312610	GT	./.
chr2	79312611	.	C	.	.	LowGQX	END=79312617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312618	.	C	.	.	LowGQX	.	GT	./.
chr2	79312619	.	T	.	.	LowGQX	END=79312622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312623	.	C	.	.	LowGQX	.	GT	./.
chr2	79312624	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312625	.	T	.	.	LowGQX	.	GT	./.
chr2	79312626	.	G	.	.	LowGQX	END=79312632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312633	.	G	.	.	LowGQX	.	GT	./.
chr2	79312634	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312635	.	C	.	.	LowGQX	END=79312636	GT	./.
chr2	79312637	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312638	.	G	.	.	LowGQX	.	GT	./.
chr2	79312639	.	C	.	.	LowGQX	END=79312646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312647	.	C	.	.	LowGQX	.	GT	./.
chr2	79312648	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312649	.	A	.	.	LowGQX	END=79312650	GT	./.
chr2	79312651	.	C	.	.	LowGQX	END=79312655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312656	.	G	.	.	LowGQX	.	GT	./.
chr2	79312657	.	C	.	.	LowGQX	END=79312662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312663	.	T	.	.	LowGQX	.	GT	./.
chr2	79312664	.	C	.	.	LowGQX	END=79312671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	79312672	.	C	.	.	LowGQX	.	GT	./.
chr2	79312673	.	A	.	.	LowGQX	END=79312674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	79312675	.	T	.	.	LowGQX	.	GT	./.
chr2	79312676	.	G	.	.	LowGQX	END=79312683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	79312684	.	A	.	.	LowGQX	.	GT	./.
chr2	79312685	.	C	.	.	LowGQX	END=79312695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	79312696	.	C	.	.	LowGQX	.	GT	./.
chr2	79312697	.	C	.	.	LowGQX	END=79312699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	79312700	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	79312701	.	G	.	.	LowGQX	.	GT	./.
chr2	79312702	.	A	.	.	LowGQX	END=79312717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	79312718	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	79312719	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	79312720	.	A	.	.	LowGQX	.	GT	./.
chr2	79312721	.	G	.	.	LowGQX	END=79312724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	79312725	.	C	.	.	LowGQX	END=79312726	GT	./.
chr2	79312727	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312728	.	T	.	.	LowGQX	.	GT	./.
chr2	79312729	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79312730	.	C	.	.	LowGQX	.	GT	./.
chr2	79312731	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79313451	.	T	.	.	LowGQX	END=79313460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79313461	.	T	.	.	LowGQX	END=79313632	GT	./.
chr2	79313881	.	T	.	.	LowGQX	END=79314058	GT	./.
chr2	79314657	.	T	.	.	LowGQX	END=79314756	GT	./.
chr2	79347970	.	G	.	.	LowGQX	END=79348069	GT	./.
chr2	79348686	.	A	.	.	LowGQX	END=79348704	GT	./.
chr2	79348705	.	G	.	.	LowGQX	END=79348716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348717	.	G	.	.	LowGQX	END=79348718	GT	./.
chr2	79348719	.	C	.	.	LowGQX	END=79348740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348741	.	A	.	.	LowGQX	.	GT	./.
chr2	79348742	.	C	.	.	LowGQX	END=79348744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348745	.	A	.	.	LowGQX	.	GT	./.
chr2	79348746	.	T	.	.	LowGQX	END=79348747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348748	.	C	.	.	LowGQX	.	GT	./.
chr2	79348749	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348750	.	T	.	.	LowGQX	END=79348751	GT	./.
chr2	79348752	.	T	.	.	LowGQX	END=79348755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348756	.	T	.	.	LowGQX	END=79348757	GT	./.
chr2	79348758	.	C	.	.	LowGQX	END=79348759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348760	.	A	.	.	LowGQX	.	GT	./.
chr2	79348761	.	C	.	.	LowGQX	END=79348762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348763	.	G	.	.	LowGQX	.	GT	./.
chr2	79348764	.	C	.	.	LowGQX	END=79348778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348779	.	A	.	.	LowGQX	END=79348781	GT	./.
chr2	79348782	.	C	.	.	LowGQX	END=79348788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348789	.	A	.	.	LowGQX	.	GT	./.
chr2	79348790	.	C	.	.	LowGQX	END=79348791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348792	.	T	.	.	LowGQX	.	GT	./.
chr2	79348793	.	G	.	.	LowGQX	END=79348798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348799	.	A	.	.	LowGQX	.	GT	./.
chr2	79348800	.	T	.	.	LowGQX	END=79348807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348808	.	T	.	.	LowGQX	.	GT	./.
chr2	79348809	.	G	.	.	LowGQX	END=79348811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348812	.	T	.	.	LowGQX	.	GT	./.
chr2	79348813	.	G	.	.	LowGQX	END=79348823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348824	.	T	.	.	LowGQX	.	GT	./.
chr2	79348825	.	G	.	.	LowGQX	END=79348830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348831	.	A	.	.	LowGQX	.	GT	./.
chr2	79348832	.	G	.	.	LowGQX	END=79348833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348834	.	G	.	.	LowGQX	.	GT	./.
chr2	79348835	.	A	.	.	LowGQX	END=79348836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348837	.	A	.	.	LowGQX	END=79348838	GT	./.
chr2	79348839	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348840	.	C	.	.	LowGQX	.	GT	./.
chr2	79348841	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348842	.	T	.	.	LowGQX	.	GT	./.
chr2	79348843	.	G	.	.	LowGQX	END=79348844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348845	.	A	.	.	LowGQX	.	GT	./.
chr2	79348846	.	G	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr2	79348847	.	G	.	.	LowGQX	END=79348854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79348855	.	A	.	.	LowGQX	END=79348896	GT	./.
chr2	79349112	.	A	.	.	LowGQX	END=79349208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79349209	.	T	.	.	LowGQX	END=79349253	GT	./.
chr2	79349965	.	A	.	.	LowGQX	END=79350080	GT	./.
chr2	79350258	.	T	.	.	LowGQX	END=79350357	GT	./.
chr2	79384336	.	T	.	.	LowGQX	END=79384435	GT	./.
chr2	79384696	.	A	.	.	LowGQX	END=79384826	GT	./.
chr2	79385450	.	A	.	.	LowGQX	END=79385534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79385535	.	C	.	.	LowGQX	.	GT	./.
chr2	79385536	.	A	.	.	LowGQX	END=79385591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79385775	.	A	.	.	LowGQX	END=79385897	GT	./.
chr2	79386444	.	A	.	.	LowGQX	END=79386543	GT	./.
chr2	79422916	.	T	.	.	LowGQX	END=79423015	GT	./.
chr2	79750337	.	A	.	.	LowGQX	END=79750436	GT	./.
chr2	79878677	.	G	.	.	LowGQX	END=79878781	GT	./.
chr2	79878782	.	C	.	.	LowGQX	END=79878786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79914656	.	G	.	.	LowGQX	END=79914711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79914712	.	A	.	.	LowGQX	.	GT	./.
chr2	79914713	.	T	.	.	LowGQX	END=79914732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	79914733	.	A	.	.	LowGQX	END=79914749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	79914750	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	79914751	.	T	.	.	LowGQX	END=79914755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	79971511	.	A	.	.	LowGQX	END=79971686	GT	./.
chr2	79971687	.	G	.	.	LowGQX	END=79971710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80085137	.	A	.	.	LowGQX	END=80085229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80085230	.	G	.	.	LowGQX	.	GT	./.
chr2	80085231	.	C	.	.	LowGQX	END=80085248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80085249	.	T	.	.	LowGQX	.	GT	./.
chr2	80085250	.	T	.	.	LowGQX	END=80085260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80085261	.	G	.	.	LowGQX	END=80085262	GT	./.
chr2	80085263	.	G	.	.	LowGQX	END=80085269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80085270	.	G	.	.	LowGQX	END=80085307	GT	./.
chr2	80096940	.	A	.	.	LowGQX	END=80097063	GT	./.
chr2	80101200	.	A	.	.	LowGQX	END=80101470	GT	./.
chr2	80136718	.	A	.	.	LowGQX	END=80136750	GT	./.
chr2	80136751	.	G	.	.	LowGQX	END=80136795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80136796	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	80136797	.	C	.	.	LowGQX	END=80136798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	80136799	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	80136800	.	C	.	.	LowGQX	END=80136808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	80136809	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	80136810	.	G	.	.	LowGQX	END=80136910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80136911	.	G	.	.	LowGQX	END=80136925	GT	./.
chr2	80529374	.	A	.	.	LowGQX	END=80529393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80529394	.	C	.	.	LowGQX	END=80529995	GT	./.
chr2	80529996	.	C	.	.	LowGQX	END=80530108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80530109	.	A	.	.	LowGQX	.	GT	./.
chr2	80530110	.	C	.	.	LowGQX	END=80530118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80530119	.	A	.	.	LowGQX	.	GT	./.
chr2	80530120	.	C	.	.	LowGQX	END=80530122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80530123	.	A	.	.	LowGQX	.	GT	./.
chr2	80530124	.	T	.	.	LowGQX	END=80530135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80530136	.	T	.	.	LowGQX	END=80530137	GT	./.
chr2	80530138	.	C	.	.	LowGQX	END=80530139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80530140	.	C	.	.	LowGQX	END=80530142	GT	./.
chr2	80530143	.	T	.	.	LowGQX	END=80530145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80530146	.	C	.	.	LowGQX	END=80530264	GT	./.
chr2	80530265	.	G	.	.	LowGQX	END=80530266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80530267	.	G	.	.	LowGQX	.	GT	./.
chr2	80530268	.	A	.	.	LowGQX	END=80530269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80530270	.	G	.	.	LowGQX	.	GT	./.
chr2	80530271	.	T	.	.	LowGQX	END=80530300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80530301	.	T	.	.	LowGQX	.	GT	./.
chr2	80530302	.	G	.	.	LowGQX	END=80530303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80530304	.	A	.	.	LowGQX	.	GT	./.
chr2	80530305	.	G	.	.	LowGQX	END=80530306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80530307	.	T	.	.	LowGQX	.	GT	./.
chr2	80530308	.	C	.	.	LowGQX	END=80530310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80530311	.	T	.	.	LowGQX	.	GT	./.
chr2	80530312	.	G	.	.	LowGQX	END=80530417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80530418	.	A	.	.	LowGQX	.	GT	./.
chr2	80530419	.	C	.	.	LowGQX	END=80530425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80530426	.	G	.	.	LowGQX	.	GT	./.
chr2	80530427	.	A	.	.	LowGQX	END=80530439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80530440	.	G	.	.	LowGQX	.	GT	./.
chr2	80530441	.	C	.	.	LowGQX	END=80530462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80530463	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr2	80530464	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr2	80530465	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	80530466	.	A	.	.	LowGQX	END=80530729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80530730	.	A	.	.	LowGQX	END=80530946	GT	./.
chr2	80540683	.	C	.	.	LowGQX	END=80540782	GT	./.
chr2	80555400	.	A	.	.	LowGQX	END=80555499	GT	./.
chr2	80620327	.	T	.	.	LowGQX	END=80620426	GT	./.
chr2	80646572	.	A	.	.	LowGQX	END=80646725	GT	./.
chr2	80646726	.	G	.	.	LowGQX	END=80646728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	80772104	.	C	.	.	LowGQX	END=80772203	GT	./.
chr2	80773030	.	A	.	.	LowGQX	END=80773190	GT	./.
chr2	80782816	.	A	.	.	LowGQX	END=80783017	GT	./.
chr2	80783018	.	G	.	.	LowGQX	END=80783020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80801286	.	A	.	.	LowGQX	END=80801441	GT	./.
chr2	80808829	.	A	.	.	LowGQX	END=80808946	GT	./.
chr2	80816427	.	A	.	.	LowGQX	END=80816612	GT	./.
chr2	80831197	.	A	.	.	LowGQX	END=80831306	GT	./.
chr2	80835307	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835308	.	G	.	.	LowGQX	.	GT	./.
chr2	80835309	.	T	.	.	LowGQX	END=80835311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835312	.	C	.	.	LowGQX	END=80835314	GT	./.
chr2	80835315	.	G	.	.	LowGQX	END=80835319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835320	.	A	.	.	LowGQX	END=80835321	GT	./.
chr2	80835322	.	C	.	.	LowGQX	END=80835324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835325	.	G	.	.	LowGQX	.	GT	./.
chr2	80835326	.	T	.	.	LowGQX	END=80835329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835330	.	C	.	.	LowGQX	END=80835331	GT	./.
chr2	80835332	.	G	.	.	LowGQX	END=80835345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835346	.	A	.	.	LowGQX	END=80835348	GT	./.
chr2	80835349	.	T	.	.	LowGQX	END=80835354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835355	.	G	.	.	LowGQX	.	GT	./.
chr2	80835356	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835357	.	A	.	.	LowGQX	.	GT	./.
chr2	80835358	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835359	.	T	.	.	LowGQX	.	GT	./.
chr2	80835360	.	G	.	.	LowGQX	END=80835363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835364	.	T	.	.	LowGQX	END=80835365	GT	./.
chr2	80835366	.	T	.	.	LowGQX	END=80835371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835372	.	C	.	.	LowGQX	.	GT	./.
chr2	80835373	.	A	.	.	LowGQX	END=80835375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835376	.	A	.	.	LowGQX	.	GT	./.
chr2	80835377	.	G	.	.	LowGQX	END=80835385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835386	.	C	.	.	LowGQX	.	GT	./.
chr2	80835387	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835388	.	G	.	.	LowGQX	END=80835389	GT	./.
chr2	80835390	.	A	.	.	LowGQX	END=80835391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835392	.	C	.	.	LowGQX	END=80835393	GT	./.
chr2	80835394	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835395	.	G	.	.	LowGQX	.	GT	./.
chr2	80835396	.	G	.	.	LowGQX	END=80835400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835401	.	G	.	.	LowGQX	END=80835402	GT	./.
chr2	80835403	.	C	.	.	LowGQX	END=80835404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835405	.	G	.	.	LowGQX	END=80835408	GT	./.
chr2	80835409	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835410	.	G	.	.	LowGQX	.	GT	./.
chr2	80835411	.	C	.	.	LowGQX	END=80835412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835413	.	G	.	.	LowGQX	END=80835414	GT	./.
chr2	80835415	.	A	.	.	LowGQX	END=80835416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835417	.	C	.	.	LowGQX	.	GT	./.
chr2	80835418	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835419	.	G	.	.	LowGQX	END=80835420	GT	./.
chr2	80835421	.	G	.	.	LowGQX	END=80835422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835423	.	G	.	.	LowGQX	.	GT	./.
chr2	80835424	.	G	.	.	LowGQX	END=80835425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835426	.	G	.	.	LowGQX	END=80835427	GT	./.
chr2	80835428	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835429	.	C	.	.	LowGQX	.	GT	./.
chr2	80835430	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835431	.	C	.	.	LowGQX	END=80835435	GT	./.
chr2	80835436	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835437	.	G	.	.	LowGQX	END=80835442	GT	./.
chr2	80835443	.	G	.	.	LowGQX	END=80835444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	80835445	.	T	.	.	LowGQX	.	GT	./.
chr2	80846209	.	G	.	.	LowGQX	END=80846353	GT	./.
chr2	80874708	.	A	.	.	LowGQX	END=80874991	GT	./.
chr2	80874992	.	T	.	.	LowGQX	END=80874999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84517943	.	A	.	.	LowGQX	END=84518398	GT	./.
chr2	84650793	.	G	.	.	PASS	END=84650795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	84650796	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:61:60
chr2	84650797	.	A	.	.	PASS	END=84650822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	84650823	.	C	.	.	PASS	END=84650905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	84650906	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:59:60
chr2	84650907	.	A	.	.	PASS	END=84650925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr2	84650926	.	G	.	.	PASS	END=84650947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:87:60
chr2	84652488	.	C	.	.	PASS	END=84652504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr2	84652505	.	A	.	.	PASS	END=84652524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr2	84652525	.	C	.	.	PASS	END=84652537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr2	84652538	.	C	.	.	PASS	END=84652559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	84652560	.	C	.	.	PASS	END=84652566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	84652567	.	G	.	.	PASS	END=84652613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	84652614	.	C	.	.	PASS	END=84652675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	84652676	.	G	.	.	PASS	END=84652704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	84652705	.	A	.	.	PASS	END=84652714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	84652715	.	T	.	.	PASS	END=84652735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	84652736	.	A	.	.	PASS	END=84652764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr2	84652765	.	A	.	.	PASS	END=84652772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:87:60
chr2	84652773	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:51:60
chr2	84652774	.	A	.	.	PASS	END=84652778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr2	84658581	.	A	.	.	PASS	END=84658618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	84658619	.	A	.	.	PASS	END=84658643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr2	84658644	.	C	.	.	PASS	END=84658738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	84658739	.	G	.	.	PASS	END=84658834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	84660389	.	G	.	.	PASS	END=84660411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	84660412	.	T	.	.	PASS	END=84660427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	84660428	.	A	.	.	PASS	END=84660441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	84660442	.	C	.	.	PASS	END=84660480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	84660481	.	C	.	.	PASS	END=84660582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	84660583	.	T	.	.	PASS	END=84660610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	84668120	.	G	.	.	PASS	END=84668137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	84668138	.	T	.	.	PASS	END=84668159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	84668160	.	A	.	.	PASS	END=84668279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	84668320	.	T	.	.	PASS	END=84668425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	84668426	.	A	.	.	PASS	END=84668508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	84668509	.	T	.	.	PASS	END=84668575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	84668576	.	T	.	.	PASS	END=84668614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	84668615	.	T	.	.	PASS	END=84668629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	84668630	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:75:60
chr2	84668631	.	A	.	.	PASS	END=84668634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr2	84670357	.	C	.	.	PASS	END=84670387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	84670388	.	A	.	.	PASS	END=84670423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	84670424	.	A	.	.	PASS	END=84670521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	84670522	.	G	.	.	PASS	END=84670570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	84670571	.	G	.	.	PASS	END=84670575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	84676013	.	T	.	.	LowGQX	END=84676112	GT	./.
chr2	84676722	.	T	.	.	PASS	END=84676800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	84676801	.	A	.	.	PASS	END=84676846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	84676847	.	A	.	.	PASS	END=84676852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	84676853	.	A	.	.	PASS	END=84676874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr2	84676875	.	C	.	.	PASS	END=84676880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr2	84676881	.	G	.	111.25	PASS	DP=41;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:32:41:81.26:60:81
chr2	84676882	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:78:60
chr2	84676883	.	G	.	.	PASS	END=84676884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:33:60
chr2	84676885	.	T	.	.	PASS	END=84676886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:60
chr2	84676887	.	A	.	51.05	LowGQX	DP=24;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:16:16:21.06:60:21
chr2	84676888	.	A	.	26.95	LowGQX	DP=25;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:16:17:1.75:60:2
chr2	84676889	.	A	.	72.10	PASS	DP=27;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:19:19:42.11:59:42
chr2	84676890	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:54:60
chr2	84676891	.	A	.	.	PASS	END=84676893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:81:60
chr2	84676894	.	A	.	.	PASS	END=84676927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	84686246	.	G	.	.	PASS	END=84686256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr2	84686257	.	A	.	.	PASS	END=84686258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:60
chr2	84686259	.	C	.	.	PASS	END=84686272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr2	84686273	.	G	.	.	PASS	END=84686279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	84686280	.	G	.	.	PASS	END=84686281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	84686282	.	A	.	.	PASS	END=84686287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr2	84686288	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:51:60
chr2	84686289	.	G	.	.	PASS	END=84686294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr2	84686295	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:54:60
chr2	84686296	.	C	.	.	PASS	END=84686312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr2	84686313	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:39:60
chr2	84686314	.	A	.	.	PASS	END=84686334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr2	84686335	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:36:60
chr2	84686336	.	C	.	.	PASS	END=84686349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr2	84686350	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:56:60
chr2	84686351	.	C	.	.	PASS	END=84686383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr2	84686384	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:60:60
chr2	84686385	.	T	.	.	PASS	END=84686389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr2	84686390	.	T	.	.	PASS	END=84686391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:63:60
chr2	84686392	.	A	.	.	PASS	END=84686409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr2	84686410	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:39:60
chr2	84686411	.	A	.	.	PASS	END=84686417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	84686418	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:21:60
chr2	84686419	.	G	.	.	PASS	END=84686426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	84686427	.	C	.	.	PASS	END=84686444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr2	84744950	.	G	.	.	LowGQX	END=84745175	GT	./.
chr2	84752668	.	A	.	.	LowGQX	END=84752726	GT	./.
chr2	84752727	.	A	.	.	LowGQX	END=84752809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84752810	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	84752811	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84752812	.	A	.	.	LowGQX	END=84752862	GT	./.
chr2	84756027	.	G	.	.	LowGQX	END=84756267	GT	./.
chr2	84756268	.	G	.	.	LowGQX	END=84756290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84771356	.	G	.	.	LowGQX	END=84771624	GT	./.
chr2	84774391	.	G	.	.	LowGQX	END=84774474	GT	./.
chr2	84774475	.	C	.	.	LowGQX	END=84774570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84774615	.	G	.	.	LowGQX	END=84774736	GT	./.
chr2	84775411	.	G	.	.	LowGQX	END=84775590	GT	./.
chr2	84777011	.	A	.	.	LowGQX	END=84777183	GT	./.
chr2	84780040	.	A	.	.	LowGQX	END=84780160	GT	./.
chr2	84784857	.	A	.	.	LowGQX	END=84785061	GT	./.
chr2	84800539	.	T	.	.	LowGQX	END=84800713	GT	./.
chr2	84804379	.	A	.	.	LowGQX	END=84804438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84804439	.	A	.	.	LowGQX	END=84804534	GT	./.
chr2	84806619	.	T	.	.	LowGQX	END=84806745	GT	./.
chr2	84806746	.	A	.	.	LowGQX	END=84806756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84806757	.	C	.	.	LowGQX	.	GT	./.
chr2	84806758	.	A	.	.	LowGQX	END=84806805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84811121	.	A	.	.	LowGQX	END=84811385	GT	./.
chr2	84815949	.	G	.	.	LowGQX	END=84816000	GT	./.
chr2	84816001	.	T	.	.	LowGQX	END=84816078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84821095	.	G	.	.	LowGQX	END=84821209	GT	./.
chr2	84822769	.	G	.	.	LowGQX	END=84822913	GT	./.
chr2	84831462	.	G	.	.	LowGQX	END=84831550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84831551	.	A	.	.	LowGQX	END=84831675	GT	./.
chr2	84832620	.	T	.	.	LowGQX	END=84832719	GT	./.
chr2	84834099	.	G	.	.	LowGQX	END=84834112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84834113	.	A	.	.	LowGQX	END=84834219	GT	./.
chr2	84838797	.	G	.	.	LowGQX	END=84838908	GT	./.
chr2	84838909	.	A	.	.	LowGQX	END=84838978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84844008	.	A	.	.	LowGQX	END=84844158	GT	./.
chr2	84846808	.	G	.	.	LowGQX	END=84847028	GT	./.
chr2	84848314	.	G	.	.	LowGQX	END=84848479	GT	./.
chr2	84848561	.	G	.	.	LowGQX	END=84848675	GT	./.
chr2	84851388	.	G	.	.	LowGQX	END=84851514	GT	./.
chr2	84851588	.	G	.	.	LowGQX	END=84851744	GT	./.
chr2	84852025	.	G	.	.	LowGQX	END=84852187	GT	./.
chr2	84861627	.	G	.	.	LowGQX	END=84861765	GT	./.
chr2	84864333	.	G	.	.	LowGQX	END=84864501	GT	./.
chr2	84867553	.	G	.	.	LowGQX	END=84867702	GT	./.
chr2	84869070	.	G	.	.	LowGQX	END=84869229	GT	./.
chr2	84880442	.	G	.	.	LowGQX	END=84880444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84880445	.	G	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	84880446	.	A	.	.	LowGQX	END=84880463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84880464	.	T	.	.	LowGQX	.	GT	./.
chr2	84880465	.	C	.	.	LowGQX	END=84880515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84880516	.	G	.	.	LowGQX	.	GT	./.
chr2	84880517	.	T	.	.	LowGQX	END=84880522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84880523	.	T	.	.	LowGQX	.	GT	./.
chr2	84880524	.	C	.	.	LowGQX	END=84880526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84880527	.	G	.	.	LowGQX	.	GT	./.
chr2	84880528	.	A	.	.	LowGQX	END=84880531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84880532	.	G	.	.	LowGQX	.	GT	./.
chr2	84880533	.	A	.	.	LowGQX	END=84880550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84880551	.	G	.	.	LowGQX	END=84880597	GT	./.
chr2	84880598	.	T	.	.	LowGQX	END=84880621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84880622	.	G	.	.	LowGQX	.	GT	./.
chr2	84880623	.	G	.	.	LowGQX	END=84880626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84880627	.	A	.	.	LowGQX	.	GT	./.
chr2	84880628	.	C	.	.	LowGQX	END=84880633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84880634	.	G	.	.	LowGQX	.	GT	./.
chr2	84880635	.	C	.	.	LowGQX	END=84880648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84880649	.	T	.	.	LowGQX	.	GT	./.
chr2	84880650	.	T	.	.	LowGQX	END=84880654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84880655	.	G	.	.	LowGQX	.	GT	./.
chr2	84880656	.	A	.	.	LowGQX	END=84880715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84880716	.	A	.	.	LowGQX	.	GT	./.
chr2	84880717	.	G	.	.	LowGQX	END=84880732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84880733	.	T	.	.	LowGQX	.	GT	./.
chr2	84880734	.	T	.	.	LowGQX	END=84880747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84880748	.	C	.	.	LowGQX	END=84880998	GT	./.
chr2	84881783	.	G	.	.	LowGQX	END=84881906	GT	./.
chr2	84885415	.	G	.	.	LowGQX	END=84885598	GT	./.
chr2	84886109	.	C	.	.	LowGQX	END=84886293	GT	./.
chr2	84896412	.	G	.	.	LowGQX	END=84896432	GT	./.
chr2	84896433	.	G	.	.	LowGQX	END=84896583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84896584	.	C	.	.	LowGQX	END=84896634	GT	./.
chr2	84897451	.	G	.	.	LowGQX	END=84897630	GT	./.
chr2	84899450	.	G	.	.	LowGQX	END=84899608	GT	./.
chr2	84904128	.	G	.	.	LowGQX	END=84904228	GT	./.
chr2	84904229	.	C	.	.	LowGQX	END=84904234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84904235	.	A	.	.	LowGQX	END=84904236	GT	./.
chr2	84904237	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84904238	.	A	.	.	LowGQX	.	GT	./.
chr2	84904239	.	C	.	.	LowGQX	END=84904240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84904241	.	G	.	.	LowGQX	.	GT	./.
chr2	84904242	.	T	.	.	LowGQX	END=84904244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84904245	.	G	.	.	LowGQX	.	GT	./.
chr2	84904246	.	A	.	.	LowGQX	END=84904252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84904253	.	T	.	.	LowGQX	END=84904254	GT	./.
chr2	84904255	.	T	.	.	LowGQX	END=84904260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84908480	.	G	.	.	LowGQX	END=84908652	GT	./.
chr2	84912449	.	G	.	.	LowGQX	END=84912529	GT	./.
chr2	84912530	.	T	.	.	LowGQX	END=84912596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84913537	.	A	.	.	LowGQX	END=84913694	GT	./.
chr2	84915562	.	G	.	.	LowGQX	END=84915751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84921372	.	G	.	.	LowGQX	.	GT	./.
chr2	84921373	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84921374	.	A	.	.	LowGQX	.	GT	./.
chr2	84921375	.	T	.	.	LowGQX	END=84921379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84921380	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	84921381	.	G	.	.	LowGQX	END=84921382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84921383	.	A	.	.	LowGQX	.	GT	./.
chr2	84921384	.	T	.	.	LowGQX	END=84921389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84921390	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	84921391	.	T	.	.	LowGQX	END=84921396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84921397	.	A	.	.	LowGQX	END=84921398	GT	./.
chr2	84921399	.	G	.	.	LowGQX	END=84921401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84921402	.	G	.	.	LowGQX	.	GT	./.
chr2	84921403	.	C	.	.	LowGQX	END=84921406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84921407	.	G	.	.	LowGQX	.	GT	./.
chr2	84921408	.	C	.	.	LowGQX	END=84921411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84921412	.	G	.	.	LowGQX	.	GT	./.
chr2	84921413	.	C	.	.	LowGQX	END=84921419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84921420	.	G	.	.	LowGQX	.	GT	./.
chr2	84921421	.	A	.	.	LowGQX	END=84921423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84921424	.	A	.	.	LowGQX	.	GT	./.
chr2	84921425	.	G	.	.	LowGQX	END=84921426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84921427	.	A	.	.	LowGQX	.	GT	./.
chr2	84921428	.	G	.	.	LowGQX	END=84921432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84921433	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	84921434	.	G	.	.	LowGQX	END=84921436	GT	./.
chr2	84921437	.	A	.	.	LowGQX	END=84921446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84921447	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	84921448	.	C	.	.	LowGQX	END=84921454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84921455	.	C	.	.	LowGQX	.	GT	./.
chr2	84921456	.	T	.	.	LowGQX	END=84921458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84921459	.	C	.	.	LowGQX	.	GT	./.
chr2	84921460	.	A	.	.	LowGQX	END=84921465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84921466	.	T	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	84921467	.	A	.	.	LowGQX	END=84921470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	84921471	.	G	.	.	LowGQX	END=84921472	GT	./.
chr2	84921473	.	G	.	.	LowGQX	END=84921478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84921479	.	A	.	.	LowGQX	.	GT	./.
chr2	84921480	.	A	.	.	LowGQX	END=84921485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84921486	.	T	.	.	LowGQX	.	GT	./.
chr2	84921487	.	G	.	.	LowGQX	END=84921489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84921490	.	G	.	.	LowGQX	.	GT	./.
chr2	84921491	.	A	.	.	LowGQX	END=84921512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84921513	.	A	.	.	LowGQX	.	GT	./.
chr2	84921514	.	T	.	.	LowGQX	END=84921515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84921516	.	A	.	.	LowGQX	.	GT	./.
chr2	84921517	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84921518	.	G	.	.	LowGQX	.	GT	./.
chr2	84921519	.	A	.	.	LowGQX	END=84921524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84921525	.	T	.	.	LowGQX	END=84921604	GT	./.
chr2	84924698	.	G	.	.	LowGQX	END=84924866	GT	./.
chr2	84924867	.	G	.	.	LowGQX	END=84924914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84926717	.	G	.	.	LowGQX	END=84926858	GT	./.
chr2	84928220	.	G	.	.	LowGQX	END=84928425	GT	./.
chr2	84928426	.	T	.	.	LowGQX	END=84928463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84930518	.	G	.	.	LowGQX	END=84930686	GT	./.
chr2	84931190	.	G	.	.	LowGQX	END=84931426	GT	./.
chr2	84932609	.	G	.	.	LowGQX	END=84932871	GT	./.
chr2	84933969	.	A	.	.	LowGQX	END=84934038	GT	./.
chr2	84934039	.	T	.	.	LowGQX	END=84934143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84934643	.	G	.	.	LowGQX	END=84934840	GT	./.
chr2	84936466	.	G	.	.	LowGQX	END=84936670	GT	./.
chr2	84937410	.	G	.	.	LowGQX	END=84937579	GT	./.
chr2	84940218	.	G	.	.	LowGQX	END=84940383	GT	./.
chr2	84942668	.	T	.	.	LowGQX	END=84942767	GT	./.
chr2	84945327	.	G	.	.	LowGQX	END=84945328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84945329	.	G	.	.	LowGQX	.	GT	./.
chr2	84945330	.	A	.	.	LowGQX	END=84945331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84945332	.	G	.	.	LowGQX	END=84945334	GT	./.
chr2	84945335	.	G	.	.	LowGQX	END=84945336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84945337	.	G	.	.	LowGQX	.	GT	./.
chr2	84945338	.	C	.	.	LowGQX	END=84945354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84945355	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	84945356	.	T	.	.	LowGQX	END=84945371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84945372	.	T	.	.	LowGQX	.	GT	./.
chr2	84945373	.	T	.	.	LowGQX	END=84945383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84945384	.	T	.	.	LowGQX	.	GT	./.
chr2	84945385	.	G	.	.	LowGQX	END=84945409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84945410	.	T	.	.	LowGQX	.	GT	./.
chr2	84945411	.	T	.	.	LowGQX	END=84945454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84945455	.	G	.	.	LowGQX	.	GT	./.
chr2	84945456	.	A	.	.	LowGQX	END=84945508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84949718	.	C	.	.	LowGQX	END=84949772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84949773	.	A	.	.	LowGQX	END=84949895	GT	./.
chr2	84949896	.	A	.	.	LowGQX	END=84949928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84954792	.	G	.	.	LowGQX	END=84954849	GT	./.
chr2	84954850	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84954851	.	A	.	.	LowGQX	.	GT	./.
chr2	84954852	.	C	.	.	LowGQX	END=84954947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84954948	.	T	.	.	LowGQX	.	GT	./.
chr2	84954949	.	G	.	.	LowGQX	END=84954958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84954959	.	G	.	.	LowGQX	.	GT	./.
chr2	84954960	.	T	.	.	LowGQX	END=84954988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84954989	.	G	.	.	LowGQX	.	GT	./.
chr2	84954990	.	G	.	.	LowGQX	END=84954999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	84955000	.	C	.	.	LowGQX	END=84955026	GT	./.
chr2	84960567	.	G	.	.	LowGQX	END=84960703	GT	./.
chr2	84972203	.	G	.	.	LowGQX	END=84972373	GT	./.
chr2	84989878	.	G	.	.	LowGQX	END=84990077	GT	./.
chr2	85008616	.	G	.	.	LowGQX	END=85008645	GT	./.
chr2	85008646	.	A	.	.	LowGQX	END=85008703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85008704	.	T	.	.	LowGQX	.	GT	./.
chr2	85008705	.	T	.	.	LowGQX	END=85008777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85011840	.	A	.	.	LowGQX	END=85011939	GT	./.
chr2	85012733	.	G	.	.	LowGQX	END=85012746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85012747	.	C	.	.	LowGQX	END=85012880	GT	./.
chr2	85014287	.	G	.	.	LowGQX	END=85014466	GT	./.
chr2	85023429	.	G	.	.	LowGQX	END=85023549	GT	./.
chr2	85024660	.	G	.	.	LowGQX	END=85024803	GT	./.
chr2	85032788	.	G	.	.	LowGQX	END=85032918	GT	./.
chr2	85035538	.	G	.	.	LowGQX	END=85035706	GT	./.
chr2	85039464	.	G	.	.	LowGQX	END=85039650	GT	./.
chr2	85040168	.	T	.	.	LowGQX	END=85040267	GT	./.
chr2	85041094	.	G	.	.	LowGQX	END=85041246	GT	./.
chr2	85042984	.	G	.	.	LowGQX	END=85043000	GT	./.
chr2	85043001	.	A	.	.	LowGQX	END=85043097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85043098	.	G	.	.	LowGQX	.	GT	./.
chr2	85043099	.	C	.	.	LowGQX	END=85043176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85043177	.	G	.	.	LowGQX	.	GT	./.
chr2	85043178	.	G	.	.	LowGQX	END=85043197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85043198	.	T	.	.	LowGQX	END=85043207	GT	./.
chr2	85046428	.	G	.	.	LowGQX	END=85046532	GT	./.
chr2	85049040	.	G	.	.	LowGQX	END=85049224	GT	./.
chr2	85051066	.	A	.	.	LowGQX	END=85051293	GT	./.
chr2	85051294	.	G	.	.	LowGQX	END=85051333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85051334	.	C	.	.	LowGQX	.	GT	./.
chr2	85051335	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85059174	.	G	.	.	LowGQX	END=85059273	GT	./.
chr2	85065310	.	A	.	.	LowGQX	END=85065409	GT	./.
chr2	85066272	.	C	.	.	LowGQX	END=85066447	GT	./.
chr2	85068984	.	C	.	.	LowGQX	END=85069117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85069118	.	A	.	.	LowGQX	END=85069131	GT	./.
chr2	85097348	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097349	.	C	.	.	LowGQX	END=85097350	GT	./.
chr2	85097351	.	G	.	.	LowGQX	END=85097355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097356	.	A	.	.	LowGQX	END=85097357	GT	./.
chr2	85097358	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097359	.	T	.	.	LowGQX	END=85097360	GT	./.
chr2	85097361	.	C	.	.	LowGQX	END=85097362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097363	.	A	.	.	LowGQX	.	GT	./.
chr2	85097364	.	C	.	.	LowGQX	END=85097365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097366	.	C	.	.	LowGQX	.	GT	./.
chr2	85097367	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097368	.	T	.	.	LowGQX	.	GT	./.
chr2	85097369	.	T	.	.	LowGQX	END=85097372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097373	.	T	.	.	LowGQX	.	GT	./.
chr2	85097374	.	G	.	.	LowGQX	END=85097376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097377	.	T	.	.	LowGQX	.	GT	./.
chr2	85097378	.	G	.	.	LowGQX	END=85097380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097381	.	A	.	.	LowGQX	.	GT	./.
chr2	85097382	.	C	.	.	LowGQX	END=85097384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097385	.	C	.	.	LowGQX	.	GT	./.
chr2	85097386	.	T	.	.	LowGQX	END=85097388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097389	.	T	.	.	LowGQX	.	GT	./.
chr2	85097390	.	C	.	.	LowGQX	END=85097397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097398	.	T	.	.	LowGQX	END=85097399	GT	./.
chr2	85097400	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097401	.	A	.	.	LowGQX	.	GT	./.
chr2	85097402	.	C	.	.	LowGQX	END=85097407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097408	.	C	.	.	LowGQX	END=85097410	GT	./.
chr2	85097411	.	T	.	.	LowGQX	END=85097418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097419	.	C	.	.	LowGQX	.	GT	./.
chr2	85097420	.	T	.	.	LowGQX	END=85097424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097425	.	C	.	.	LowGQX	END=85097426	GT	./.
chr2	85097427	.	C	.	.	LowGQX	END=85097430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097431	.	G	.	.	LowGQX	.	GT	./.
chr2	85097432	.	C	.	.	LowGQX	END=85097436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097437	.	T	.	.	LowGQX	.	GT	./.
chr2	85097438	.	G	.	.	LowGQX	END=85097439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097440	.	G	.	.	LowGQX	.	GT	./.
chr2	85097441	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85097442	.	A	.	.	LowGQX	END=85097909	GT	./.
chr2	85108000	.	A	.	.	LowGQX	END=85108163	GT	./.
chr2	85133140	.	A	.	.	LowGQX	END=85133215	GT	./.
chr2	85133216	.	G	.	.	LowGQX	END=85133243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85133481	.	C	.	.	LowGQX	END=85133580	GT	./.
chr2	85198473	.	T	.	.	LowGQX	END=85198632	GT	./.
chr2	85255011	.	G	.	.	LowGQX	END=85255179	GT	./.
chr2	85262138	.	G	.	.	LowGQX	END=85262278	GT	./.
chr2	85270686	.	G	.	.	LowGQX	END=85270788	GT	./.
chr2	85273226	.	T	.	.	LowGQX	END=85273244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85273245	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	85273246	.	G	.	.	LowGQX	END=85273261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85273262	.	G	.	.	LowGQX	END=85273401	GT	./.
chr2	85276488	.	G	.	.	LowGQX	END=85276771	GT	./.
chr2	85280270	.	G	.	.	LowGQX	END=85280360	GT	./.
chr2	85280361	.	G	.	.	LowGQX	END=85280375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85280376	.	T	.	.	LowGQX	.	GT	./.
chr2	85280377	.	G	.	.	LowGQX	END=85280396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85280397	.	T	.	.	LowGQX	.	GT	./.
chr2	85280398	.	G	.	.	LowGQX	END=85280399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85280400	.	G	.	.	LowGQX	.	GT	./.
chr2	85280401	.	G	.	.	LowGQX	END=85280406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85280407	.	C	.	.	LowGQX	.	GT	./.
chr2	85280408	.	G	.	.	LowGQX	END=85280487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85280488	.	A	.	.	LowGQX	.	GT	./.
chr2	85280489	.	A	.	.	LowGQX	END=85280507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85280508	.	T	.	.	LowGQX	.	GT	./.
chr2	85280509	.	G	.	.	LowGQX	END=85280523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85280524	.	C	.	.	LowGQX	.	GT	./.
chr2	85280525	.	C	.	.	LowGQX	END=85280532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85360795	.	C	.	.	LowGQX	END=85360844	GT	./.
chr2	85360845	.	G	.	.	LowGQX	END=85360850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85360851	.	G	.	.	LowGQX	END=85360853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	85360854	.	G	.	.	LowGQX	END=85360859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr2	85360860	.	G	.	.	LowGQX	END=85360866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	85360867	.	C	.	.	PASS	END=85360871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	85360872	.	G	.	.	PASS	END=85360882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr2	85360883	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:6:60
chr2	85360884	.	C	.	.	PASS	END=85360886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	85360887	.	G	.	.	PASS	END=85360895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	85360896	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:39:60
chr2	85360897	.	C	.	.	PASS	END=85360898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr2	85360899	.	A	.	.	PASS	END=85360917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr2	85360918	.	G	.	.	PASS	END=85360944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	85360945	.	C	.	.	PASS	END=85360956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	85360957	.	G	.	.	PASS	END=85360988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	85360989	.	A	.	.	PASS	END=85361058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	85361121	.	T	.	.	PASS	END=85361180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	85361181	.	C	.	.	PASS	END=85361220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	85361444	.	A	.	.	PASS	END=85361480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:84:60
chr2	85361481	.	C	.	.	PASS	END=85361542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:81:60
chr2	85361543	.	C	.	.	PASS	END=85361547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr2	85361548	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:51:60
chr2	85361549	.	C	.	.	PASS	END=85361553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:75:60
chr2	85361554	.	C	.	.	PASS	END=85361563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr2	85361564	.	A	.	.	PASS	END=85361575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr2	85510610	.	C	.	.	PASS	END=85510651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	85510652	.	C	.	.	PASS	END=85510708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	85510709	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:85:99:60
chr2	85529565	.	A	.	.	PASS	END=85529568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr2	85529569	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:52:60
chr2	85529570	.	C	.	.	PASS	END=85529583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr2	85529584	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:63:60
chr2	85529585	.	T	.	.	PASS	END=85529597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr2	85529598	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:51:60
chr2	85529599	.	T	.	.	PASS	END=85529603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr2	85529604	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:58:60
chr2	85529605	.	A	.	.	PASS	END=85529633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr2	85529634	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:64:60
chr2	85529635	.	C	.	.	PASS	END=85529696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:96:60
chr2	85529697	.	T	.	.	PASS	END=85529701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr2	85529702	.	T	.	.	PASS	END=85529713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr2	85529714	.	C	.	.	PASS	END=85529728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr2	85529729	.	T	.	.	PASS	END=85529739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	85529740	.	G	.	.	PASS	END=85529741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr2	85531016	.	A	.	.	PASS	END=85531028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	85531029	.	C	.	.	PASS	END=85531111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	85531112	.	C	.	.	PASS	END=85531122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	85531370	.	C	.	.	PASS	END=85531376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:69:60
chr2	85531377	.	G	.	.	PASS	END=85531405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:60
chr2	85531406	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:75:60
chr2	85531407	.	C	.	.	PASS	END=85531469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	85532341	.	C	.	.	PASS	END=85532433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr2	85532434	.	C	.	.	PASS	END=85532450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr2	85532451	.	T	.	.	PASS	END=85532528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	85533327	.	A	.	.	PASS	END=85533335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr2	85533336	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:75:60
chr2	85533337	.	C	.	.	PASS	END=85533388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	85533389	.	G	.	.	PASS	END=85533434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	85533435	.	G	.	.	PASS	END=85533476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	85533477	.	C	.	.	PASS	END=85533490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	85533573	.	A	.	.	PASS	END=85533618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr2	85533619	.	G	.	.	PASS	END=85533656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	85533657	.	C	.	.	PASS	END=85533677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	85533678	.	A	.	.	PASS	END=85533684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	85534753	.	T	.	.	PASS	END=85534808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:274:99:60
chr2	85534809	.	A	.	.	PASS	END=85534852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr2	85536150	.	A	.	.	PASS	END=85536183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	85536184	.	G	.	.	PASS	END=85536224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	85536225	.	C	.	.	PASS	END=85536256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	85536257	.	C	.	.	PASS	END=85536379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr2	85536380	.	C	.	.	PASS	END=85536418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	85536419	.	A	.	.	PASS	END=85536587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	85549747	.	A	.	.	LowGQX	END=85549922	GT	./.
chr2	85552001	.	C	.	.	LowGQX	END=85552121	GT	./.
chr2	85553630	.	C	.	.	LowGQX	END=85553808	GT	./.
chr2	85553809	.	G	.	.	LowGQX	END=85553811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553812	.	C	.	.	LowGQX	.	GT	./.
chr2	85553813	.	C	.	.	LowGQX	END=85553819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553820	.	C	.	.	LowGQX	.	GT	./.
chr2	85553821	.	T	.	.	LowGQX	END=85553825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553826	.	T	.	.	LowGQX	END=85553827	GT	./.
chr2	85553828	.	T	.	.	LowGQX	END=85553837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553838	.	G	.	.	LowGQX	.	GT	./.
chr2	85553839	.	G	.	.	LowGQX	END=85553845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553846	.	A	.	.	LowGQX	.	GT	./.
chr2	85553847	.	G	.	.	LowGQX	END=85553851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553852	.	C	.	.	LowGQX	.	GT	./.
chr2	85553853	.	C	.	.	LowGQX	END=85553856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553857	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	85553858	.	G	.	.	LowGQX	END=85553873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553874	.	T	.	.	LowGQX	.	GT	./.
chr2	85553875	.	T	.	.	LowGQX	END=85553877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553878	.	G	.	.	LowGQX	.	GT	./.
chr2	85553879	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553880	.	C	.	.	LowGQX	.	GT	./.
chr2	85553881	.	T	.	.	LowGQX	END=85553888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553889	.	C	.	.	LowGQX	END=85553890	GT	./.
chr2	85553891	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553892	.	C	.	.	LowGQX	.	GT	./.
chr2	85553893	.	A	.	.	LowGQX	END=85553897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553898	.	C	.	.	LowGQX	.	GT	./.
chr2	85553899	.	T	.	.	LowGQX	END=85553901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553902	.	G	.	.	LowGQX	.	GT	./.
chr2	85553903	.	T	.	.	LowGQX	END=85553905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553906	.	G	.	.	LowGQX	END=85553908	GT	./.
chr2	85553909	.	C	.	.	LowGQX	END=85553914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553915	.	A	.	.	LowGQX	.	GT	./.
chr2	85553916	.	C	.	.	LowGQX	END=85553921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553922	.	T	.	.	LowGQX	.	GT	./.
chr2	85553923	.	T	.	.	LowGQX	END=85553931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553932	.	G	.	.	LowGQX	.	GT	./.
chr2	85553933	.	G	.	.	LowGQX	END=85553938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553939	.	A	.	.	LowGQX	.	GT	./.
chr2	85553940	.	A	.	.	LowGQX	END=85553941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553942	.	T	.	.	LowGQX	.	GT	./.
chr2	85553943	.	G	.	.	LowGQX	END=85553944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553945	.	G	.	.	LowGQX	.	GT	./.
chr2	85553946	.	G	.	.	LowGQX	END=85553947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553948	.	C	.	.	LowGQX	END=85553949	GT	./.
chr2	85553950	.	G	.	.	LowGQX	END=85553951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553952	.	T	.	.	LowGQX	.	GT	./.
chr2	85553953	.	T	.	.	LowGQX	END=85553956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85553957	.	C	.	.	LowGQX	END=85554022	GT	./.
chr2	85554023	.	C	.	.	LowGQX	END=85554025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554026	.	T	.	.	LowGQX	.	GT	./.
chr2	85554027	.	G	.	.	LowGQX	END=85554028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554029	.	G	.	.	LowGQX	.	GT	./.
chr2	85554030	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554031	.	A	.	.	LowGQX	.	GT	./.
chr2	85554032	.	G	.	.	LowGQX	END=85554042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554043	.	T	.	.	LowGQX	.	GT	./.
chr2	85554044	.	C	.	.	LowGQX	END=85554049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554050	.	G	.	.	LowGQX	.	GT	./.
chr2	85554051	.	G	.	.	LowGQX	END=85554052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554053	.	T	.	.	LowGQX	END=85554054	GT	./.
chr2	85554055	.	G	.	.	LowGQX	END=85554061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554062	.	G	.	.	LowGQX	.	GT	./.
chr2	85554063	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554064	.	T	.	.	LowGQX	.	GT	./.
chr2	85554065	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554066	.	G	.	.	LowGQX	.	GT	./.
chr2	85554067	.	G	.	.	LowGQX	END=85554069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554070	.	T	.	.	LowGQX	.	GT	./.
chr2	85554071	.	G	.	.	LowGQX	END=85554075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554076	.	T	.	.	LowGQX	.	GT	./.
chr2	85554077	.	T	.	.	LowGQX	END=85554078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554079	.	C	.	.	LowGQX	.	GT	./.
chr2	85554080	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554081	.	G	.	.	LowGQX	.	GT	./.
chr2	85554082	.	G	.	.	LowGQX	END=85554088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554089	.	G	.	.	LowGQX	END=85554091	GT	./.
chr2	85554092	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554093	.	T	.	.	LowGQX	.	GT	./.
chr2	85554094	.	G	.	.	LowGQX	END=85554100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554101	.	C	.	.	LowGQX	.	GT	./.
chr2	85554102	.	C	.	.	LowGQX	END=85554107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554108	.	A	.	.	LowGQX	.	GT	./.
chr2	85554109	.	G	.	.	LowGQX	END=85554112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554113	.	T	.	.	LowGQX	.	GT	./.
chr2	85554114	.	G	.	.	LowGQX	END=85554116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554117	.	T	.	.	LowGQX	.	GT	./.
chr2	85554118	.	T	.	.	LowGQX	END=85554122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554123	.	G	.	.	LowGQX	.	GT	./.
chr2	85554124	.	G	.	.	LowGQX	END=85554129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554130	.	T	.	.	LowGQX	.	GT	./.
chr2	85554131	.	C	.	.	LowGQX	END=85554140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554141	.	C	.	.	LowGQX	END=85554143	GT	./.
chr2	85554144	.	C	.	.	LowGQX	END=85554148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554149	.	T	.	.	LowGQX	.	GT	./.
chr2	85554150	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554151	.	G	.	.	LowGQX	.	GT	./.
chr2	85554152	.	G	.	.	LowGQX	END=85554163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554164	.	G	.	.	LowGQX	END=85554165	GT	./.
chr2	85554166	.	C	.	.	LowGQX	END=85554173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554174	.	C	.	.	LowGQX	END=85554414	GT	./.
chr2	85554415	.	G	.	.	LowGQX	END=85554429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554430	.	G	.	.	LowGQX	.	GT	./.
chr2	85554431	.	C	.	.	LowGQX	END=85554433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554434	.	C	.	.	LowGQX	.	GT	./.
chr2	85554435	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554436	.	G	.	.	LowGQX	.	GT	./.
chr2	85554437	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554438	.	T	.	.	LowGQX	.	GT	./.
chr2	85554439	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554440	.	T	.	.	LowGQX	END=85554443	GT	./.
chr2	85554444	.	A	.	.	LowGQX	END=85554445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554446	.	T	.	.	LowGQX	END=85554447	GT	./.
chr2	85554448	.	C	.	.	LowGQX	END=85554454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554455	.	T	.	.	LowGQX	.	GT	./.
chr2	85554456	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554457	.	G	.	.	LowGQX	.	GT	./.
chr2	85554458	.	G	.	.	LowGQX	END=85554463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554464	.	G	.	.	LowGQX	END=85554468	GT	./.
chr2	85554469	.	T	.	.	LowGQX	END=85554470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554471	.	C	.	.	LowGQX	.	GT	./.
chr2	85554472	.	G	.	.	LowGQX	END=85554474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554475	.	T	.	.	LowGQX	END=85554479	GT	./.
chr2	85554480	.	C	.	.	LowGQX	END=85554482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554483	.	A	.	.	LowGQX	END=85554484	GT	./.
chr2	85554485	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554486	.	A	.	.	LowGQX	.	GT	./.
chr2	85554487	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554488	.	T	.	.	LowGQX	.	GT	./.
chr2	85554489	.	G	.	.	LowGQX	END=85554493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554494	.	C	.	.	LowGQX	END=85554495	GT	./.
chr2	85554496	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554497	.	T	.	.	LowGQX	.	GT	./.
chr2	85554498	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554499	.	G	.	.	LowGQX	END=85554501	GT	./.
chr2	85554502	.	G	.	.	LowGQX	END=85554503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554504	.	C	.	.	LowGQX	.	GT	./.
chr2	85554505	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554506	.	G	.	.	LowGQX	END=85554507	GT	./.
chr2	85554508	.	G	.	.	LowGQX	END=85554509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554510	.	C	.	.	LowGQX	.	GT	./.
chr2	85554511	.	T	.	.	LowGQX	END=85554512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554513	.	C	.	.	LowGQX	.	GT	./.
chr2	85554514	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554515	.	A	.	.	LowGQX	END=85554518	GT	./.
chr2	85554519	.	C	.	.	LowGQX	END=85554520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554521	.	A	.	.	LowGQX	.	GT	./.
chr2	85554522	.	C	.	.	LowGQX	END=85554523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554524	.	T	.	.	LowGQX	.	GT	./.
chr2	85554525	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554526	.	C	.	.	LowGQX	END=85554528	GT	./.
chr2	85554529	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554530	.	T	.	.	LowGQX	END=85554550	GT	./.
chr2	85554551	.	C	.	.	LowGQX	END=85554553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554554	.	C	.	.	LowGQX	END=85554555	GT	./.
chr2	85554556	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554557	.	C	.	.	LowGQX	.	GT	./.
chr2	85554558	.	A	.	.	LowGQX	END=85554563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554564	.	C	.	.	LowGQX	END=85554570	GT	./.
chr2	85554571	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554572	.	A	.	.	LowGQX	.	GT	./.
chr2	85554573	.	G	.	.	LowGQX	END=85554574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554575	.	T	.	.	LowGQX	END=85554577	GT	./.
chr2	85554578	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554579	.	T	.	.	LowGQX	END=85554581	GT	./.
chr2	85554582	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554583	.	T	.	.	LowGQX	.	GT	./.
chr2	85554584	.	G	.	.	LowGQX	END=85554585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554586	.	G	.	.	LowGQX	END=85554587	GT	./.
chr2	85554588	.	C	.	.	LowGQX	END=85554589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554590	.	T	.	.	LowGQX	END=85554592	GT	./.
chr2	85554593	.	C	.	.	LowGQX	END=85554596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554597	.	C	.	.	LowGQX	.	GT	./.
chr2	85554598	.	G	.	.	LowGQX	END=85554607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554608	.	T	.	.	LowGQX	.	GT	./.
chr2	85554609	.	G	.	.	LowGQX	END=85554613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554614	.	G	.	.	LowGQX	.	GT	./.
chr2	85554615	.	G	.	.	LowGQX	END=85554638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85554639	.	C	.	.	LowGQX	END=85554808	GT	./.
chr2	85555013	.	A	.	.	LowGQX	END=85555112	GT	./.
chr2	85570363	.	A	.	.	LowGQX	END=85570479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85570480	.	A	.	.	LowGQX	END=85570506	GT	./.
chr2	85570760	.	A	.	.	LowGQX	END=85570772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85570773	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	85570774	.	G	.	.	LowGQX	END=85570837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85570838	.	A	.	.	LowGQX	END=85570923	GT	./.
chr2	85571120	.	A	.	.	LowGQX	END=85571290	GT	./.
chr2	85571360	.	A	.	.	LowGQX	END=85571473	GT	./.
chr2	85571715	.	A	.	.	LowGQX	END=85571737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85571738	.	T	.	.	LowGQX	.	GT	./.
chr2	85571739	.	A	.	.	LowGQX	END=85571741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85571742	.	A	.	.	LowGQX	.	GT	./.
chr2	85571743	.	A	.	.	LowGQX	END=85571748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85571749	.	G	.	.	LowGQX	.	GT	./.
chr2	85571750	.	T	.	.	LowGQX	END=85571759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85571760	.	A	.	.	LowGQX	END=85571761	GT	./.
chr2	85571762	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85571763	.	G	.	.	LowGQX	.	GT	./.
chr2	85571764	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85571765	.	A	.	.	LowGQX	.	GT	./.
chr2	85571766	.	G	.	.	LowGQX	END=85571769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85571770	.	C	.	.	LowGQX	.	GT	./.
chr2	85571771	.	A	.	.	LowGQX	END=85571802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85571803	.	A	.	.	LowGQX	END=85571804	GT	./.
chr2	85571805	.	C	.	.	LowGQX	END=85571807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85571808	.	A	.	.	LowGQX	.	GT	./.
chr2	85571809	.	G	.	.	LowGQX	END=85571812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85571813	.	A	.	.	LowGQX	.	GT	./.
chr2	85571814	.	T	.	.	LowGQX	END=85571824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85571825	.	G	.	.	LowGQX	.	GT	./.
chr2	85571826	.	G	.	.	LowGQX	END=85571830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85571831	.	A	.	.	LowGQX	.	GT	./.
chr2	85571832	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85571833	.	C	.	.	LowGQX	.	GT	./.
chr2	85571834	.	G	.	.	LowGQX	END=85571839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85571840	.	A	.	.	LowGQX	.	GT	./.
chr2	85571841	.	G	.	.	LowGQX	END=85571843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85571844	.	G	.	.	LowGQX	END=85571857	GT	./.
chr2	85572898	.	A	.	.	LowGQX	END=85573219	GT	./.
chr2	85576505	.	A	.	.	LowGQX	END=85576515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85576516	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	85576517	.	C	.	.	LowGQX	END=85576537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85576538	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	85576539	.	C	.	.	LowGQX	END=85576545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85576546	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	85576547	.	A	.	.	LowGQX	END=85576550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85576551	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	85576552	.	C	.	.	LowGQX	END=85576564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85576565	.	A	.	.	LowGQX	END=85576706	GT	./.
chr2	85577161	.	A	.	.	LowGQX	END=85577366	GT	./.
chr2	85577901	.	A	.	.	LowGQX	END=85578146	GT	./.
chr2	85578801	.	A	.	.	LowGQX	END=85578909	GT	./.
chr2	85578910	.	G	.	.	LowGQX	END=85578987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581446	.	T	.	.	LowGQX	END=85581447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85581448	.	C	.	.	LowGQX	.	GT	./.
chr2	85581449	.	C	.	.	LowGQX	END=85581450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85581451	.	C	.	.	LowGQX	.	GT	./.
chr2	85581452	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85581453	.	T	.	.	LowGQX	END=85581456	GT	./.
chr2	85581457	.	A	.	.	LowGQX	END=85581460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85581461	.	T	.	.	LowGQX	.	GT	./.
chr2	85581462	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581463	.	T	.	.	LowGQX	.	GT	./.
chr2	85581464	.	T	.	.	LowGQX	END=85581466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581467	.	A	.	.	LowGQX	END=85581539	GT	./.
chr2	85581540	.	T	.	.	LowGQX	END=85581541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581542	.	G	.	.	LowGQX	.	GT	./.
chr2	85581543	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581544	.	G	.	.	LowGQX	END=85581545	GT	./.
chr2	85581546	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581547	.	G	.	.	LowGQX	.	GT	./.
chr2	85581548	.	C	.	.	LowGQX	END=85581551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581552	.	C	.	.	LowGQX	.	GT	./.
chr2	85581553	.	A	.	.	LowGQX	END=85581555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581556	.	G	.	2.30	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:60:0
chr2	85581557	.	A	.	.	LowGQX	.	GT	./.
chr2	85581558	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581559	.	T	.	.	LowGQX	.	GT	./.
chr2	85581560	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581561	.	G	.	.	LowGQX	END=85581564	GT	./.
chr2	85581565	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581566	.	A	.	.	LowGQX	.	GT	./.
chr2	85581567	.	A	.	.	LowGQX	END=85581570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581571	.	A	.	.	LowGQX	.	GT	./.
chr2	85581572	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581573	.	C	.	.	LowGQX	.	GT	./.
chr2	85581574	.	T	.	.	LowGQX	END=85581584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581585	.	C	.	.	LowGQX	.	GT	./.
chr2	85581586	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581587	.	G	.	.	LowGQX	.	GT	./.
chr2	85581588	.	C	.	.	LowGQX	END=85581589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581590	.	A	.	.	LowGQX	END=85581592	GT	./.
chr2	85581593	.	A	.	.	LowGQX	END=85581596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581597	.	G	.	.	LowGQX	.	GT	./.
chr2	85581598	.	C	.	.	LowGQX	END=85581600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581601	.	A	.	.	LowGQX	.	GT	./.
chr2	85581602	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581603	.	C	.	.	LowGQX	END=85581607	GT	./.
chr2	85581608	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581609	.	G	.	.	LowGQX	.	GT	./.
chr2	85581610	.	C	.	.	LowGQX	END=85581612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581613	.	C	.	.	LowGQX	.	GT	./.
chr2	85581614	.	A	.	.	LowGQX	END=85581617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581618	.	G	.	.	LowGQX	END=85581621	GT	./.
chr2	85581622	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581623	.	A	.	.	LowGQX	.	GT	./.
chr2	85581624	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581625	.	C	.	.	LowGQX	END=85581626	GT	./.
chr2	85581627	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581628	.	C	.	.	LowGQX	.	GT	./.
chr2	85581629	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85581630	.	T	.	.	LowGQX	.	GT	./.
chr2	85581631	.	C	.	.	LowGQX	END=85581632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85584299	.	A	.	.	LowGQX	END=85584398	GT	./.
chr2	85589297	.	T	.	.	LowGQX	END=85589396	GT	./.
chr2	85590205	.	C	.	.	LowGQX	END=85590304	GT	./.
chr2	85595794	.	C	.	.	LowGQX	END=85595893	GT	./.
chr2	85596858	.	A	.	.	LowGQX	.	GT	./.
chr2	85596859	.	C	.	.	LowGQX	END=85596861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85596862	.	G	.	.	LowGQX	.	GT	./.
chr2	85596863	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85596864	.	A	.	.	LowGQX	.	GT	./.
chr2	85596865	.	G	.	.	LowGQX	END=85596906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85596907	.	G	.	.	LowGQX	.	GT	./.
chr2	85596908	.	T	.	.	LowGQX	END=85596931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85596932	.	T	.	.	LowGQX	END=85596957	GT	./.
chr2	85598207	.	A	.	.	LowGQX	END=85598403	GT	./.
chr2	85598561	.	A	.	.	LowGQX	END=85598611	GT	./.
chr2	85598612	.	C	.	.	LowGQX	END=85598687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85604465	.	A	.	.	LowGQX	END=85604599	GT	./.
chr2	85614184	.	G	.	.	LowGQX	END=85614283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85616863	.	C	.	.	LowGQX	END=85616962	GT	./.
chr2	85617139	.	A	.	.	LowGQX	END=85617215	GT	./.
chr2	85617216	.	G	.	.	LowGQX	END=85617260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85617261	.	A	.	.	LowGQX	.	GT	./.
chr2	85617262	.	G	.	.	LowGQX	END=85617389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85617390	.	T	.	.	LowGQX	END=85617396	GT	./.
chr2	85617397	.	T	.	.	LowGQX	END=85617403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85617404	.	T	.	.	LowGQX	.	GT	./.
chr2	85617405	.	G	.	.	LowGQX	END=85617418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85617419	.	T	.	.	LowGQX	.	GT	./.
chr2	85617420	.	G	.	.	LowGQX	END=85617424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85617425	.	C	.	.	LowGQX	END=85617427	GT	./.
chr2	85617428	.	A	.	.	LowGQX	END=85617431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85617432	.	T	.	.	LowGQX	END=85617433	GT	./.
chr2	85617434	.	C	.	.	LowGQX	END=85617438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85617439	.	T	.	.	LowGQX	END=85617440	GT	./.
chr2	85617441	.	C	.	.	LowGQX	END=85617447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85617448	.	C	.	.	LowGQX	.	GT	./.
chr2	85617449	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85617450	.	C	.	.	LowGQX	.	GT	./.
chr2	85617451	.	A	.	.	LowGQX	END=85617470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85617471	.	T	.	.	LowGQX	.	GT	./.
chr2	85617472	.	T	.	.	LowGQX	END=85617476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85617477	.	T	.	.	LowGQX	.	GT	./.
chr2	85617478	.	G	.	.	LowGQX	END=85617490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85617491	.	A	.	.	LowGQX	.	GT	./.
chr2	85617492	.	T	.	.	LowGQX	END=85617495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85617496	.	C	.	.	LowGQX	.	GT	./.
chr2	85617497	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85617498	.	C	.	.	LowGQX	.	GT	./.
chr2	85617499	.	T	.	.	LowGQX	END=85617508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85617509	.	T	.	.	LowGQX	END=85617510	GT	./.
chr2	85617511	.	C	.	.	LowGQX	END=85617521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85617522	.	A	.	.	LowGQX	.	GT	./.
chr2	85617523	.	A	.	.	LowGQX	END=85617534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85617535	.	C	.	.	LowGQX	END=85617536	GT	./.
chr2	85617537	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85617538	.	C	.	.	LowGQX	END=85617539	GT	./.
chr2	85617540	.	C	.	.	LowGQX	END=85617546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85617547	.	T	.	.	LowGQX	END=85617623	GT	./.
chr2	85617882	.	G	.	.	LowGQX	END=85618085	GT	./.
chr2	85621939	.	C	.	.	LowGQX	END=85622153	GT	./.
chr2	85622625	.	C	.	.	LowGQX	END=85622751	GT	./.
chr2	85625141	.	A	.	.	LowGQX	END=85625217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85625218	.	C	.	.	LowGQX	END=85625277	GT	./.
chr2	85625750	.	C	.	.	LowGQX	END=85625817	GT	./.
chr2	85625818	.	A	.	.	LowGQX	END=85625960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85626257	.	A	.	.	LowGQX	END=85626410	GT	./.
chr2	85628286	.	A	.	.	LowGQX	END=85628313	GT	./.
chr2	85628314	.	C	.	.	LowGQX	END=85628375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85628376	.	T	.	.	LowGQX	.	GT	./.
chr2	85628377	.	T	.	.	LowGQX	END=85628430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85628431	.	A	.	.	LowGQX	.	GT	./.
chr2	85628432	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85628433	.	G	.	.	LowGQX	END=85628434	GT	./.
chr2	85628435	.	T	.	.	LowGQX	END=85628438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85628439	.	T	.	.	LowGQX	.	GT	./.
chr2	85628440	.	C	.	.	LowGQX	END=85628454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85628650	.	A	.	.	LowGQX	END=85628808	GT	./.
chr2	85628906	.	A	.	.	LowGQX	END=85629071	GT	./.
chr2	85629072	.	G	.	.	LowGQX	END=85629082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85629208	.	A	.	.	LowGQX	END=85629246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85629247	.	T	.	.	LowGQX	END=85629307	GT	./.
chr2	85661164	.	T	.	.	LowGQX	END=85661263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85661428	.	A	.	.	LowGQX	END=85661527	GT	./.
chr2	85661558	.	G	.	.	LowGQX	END=85661657	GT	./.
chr2	85662047	.	A	.	.	LowGQX	END=85662055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85662056	.	T	.	.	LowGQX	.	GT	./.
chr2	85662057	.	G	.	.	LowGQX	END=85662112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85662113	.	T	.	.	LowGQX	END=85662276	GT	./.
chr2	85662528	.	A	.	.	LowGQX	END=85662627	GT	./.
chr2	85662787	.	A	.	.	LowGQX	END=85662793	GT	./.
chr2	85662794	.	G	.	.	LowGQX	END=85662949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85663587	.	A	.	.	LowGQX	END=85663707	GT	./.
chr2	85766407	.	C	.	.	LowGQX	END=85766506	GT	./.
chr2	85768195	.	C	.	.	LowGQX	END=85768196	GT	./.
chr2	85768197	.	C	.	.	LowGQX	END=85768198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768199	.	T	.	.	LowGQX	.	GT	./.
chr2	85768200	.	T	.	.	LowGQX	END=85768205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768206	.	A	.	.	LowGQX	.	GT	./.
chr2	85768207	.	T	.	.	LowGQX	END=85768225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768226	.	A	.	.	LowGQX	.	GT	./.
chr2	85768227	.	G	.	.	LowGQX	END=85768232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768233	.	C	.	.	LowGQX	END=85768234	GT	./.
chr2	85768235	.	G	.	.	LowGQX	END=85768238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768239	.	T	.	.	LowGQX	.	GT	./.
chr2	85768240	.	T	.	.	LowGQX	END=85768241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768242	.	A	.	.	LowGQX	.	GT	./.
chr2	85768243	.	T	.	.	LowGQX	END=85768245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768246	.	C	.	.	LowGQX	.	GT	./.
chr2	85768247	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768248	.	A	.	.	LowGQX	.	GT	./.
chr2	85768249	.	C	.	.	LowGQX	END=85768252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768253	.	C	.	.	LowGQX	.	GT	./.
chr2	85768254	.	A	.	.	LowGQX	END=85768256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768257	.	A	.	.	LowGQX	END=85768258	GT	./.
chr2	85768259	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768260	.	A	.	.	LowGQX	.	GT	./.
chr2	85768261	.	T	.	.	LowGQX	END=85768264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768265	.	G	.	.	LowGQX	.	GT	./.
chr2	85768266	.	A	.	.	LowGQX	END=85768267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768268	.	G	.	.	LowGQX	.	GT	./.
chr2	85768269	.	C	.	.	LowGQX	END=85768271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768272	.	A	.	.	LowGQX	END=85768294	GT	./.
chr2	85768376	.	A	.	.	LowGQX	END=85768473	GT	./.
chr2	85768474	.	A	.	.	LowGQX	END=85768475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768476	.	A	.	.	LowGQX	.	GT	./.
chr2	85768477	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768478	.	T	.	.	LowGQX	.	GT	./.
chr2	85768479	.	G	.	.	LowGQX	END=85768484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768485	.	G	.	.	LowGQX	END=85768487	GT	./.
chr2	85768488	.	G	.	.	LowGQX	END=85768489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768490	.	T	.	.	LowGQX	.	GT	./.
chr2	85768491	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768492	.	C	.	.	LowGQX	.	GT	./.
chr2	85768493	.	T	.	.	LowGQX	END=85768495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768496	.	C	.	.	LowGQX	.	GT	./.
chr2	85768497	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768498	.	A	.	.	LowGQX	END=85768499	GT	./.
chr2	85768500	.	G	.	.	LowGQX	END=85768502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85768754	.	A	.	.	LowGQX	END=85768904	GT	./.
chr2	85768950	.	A	.	.	LowGQX	END=85768975	GT	./.
chr2	85768976	.	G	.	.	LowGQX	END=85769003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85769004	.	C	.	.	LowGQX	.	GT	./.
chr2	85769005	.	C	.	.	LowGQX	END=85769073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85769074	.	A	.	.	LowGQX	.	GT	./.
chr2	85769075	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85769076	.	G	.	.	LowGQX	.	GT	./.
chr2	85769077	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85769078	.	C	.	.	LowGQX	END=85769079	GT	./.
chr2	85769080	.	T	.	.	LowGQX	END=85769097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85769276	.	A	.	.	LowGQX	END=85769297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85769298	.	G	.	.	LowGQX	END=85769489	GT	./.
chr2	85769490	.	G	.	.	LowGQX	END=85769498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85769686	.	A	.	.	LowGQX	END=85769727	GT	./.
chr2	85769728	.	C	.	.	LowGQX	END=85769729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85769730	.	T	.	.	LowGQX	.	GT	./.
chr2	85769731	.	A	.	.	LowGQX	END=85769737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85769738	.	T	.	.	LowGQX	.	GT	./.
chr2	85769739	.	T	.	.	LowGQX	END=85769746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85769747	.	T	.	.	LowGQX	.	GT	./.
chr2	85769748	.	C	.	.	LowGQX	END=85769773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85769774	.	G	.	.	LowGQX	.	GT	./.
chr2	85769775	.	G	.	.	LowGQX	END=85769872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85770022	.	A	.	.	LowGQX	END=85770161	GT	./.
chr2	85770791	.	A	.	.	LowGQX	END=85770897	GT	./.
chr2	85777006	.	A	.	.	PASS	END=85777019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	85777020	.	G	.	.	PASS	END=85777050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	85777051	.	C	.	.	PASS	END=85777098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr2	85777099	.	A	.	.	PASS	END=85777160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr2	85777161	.	A	.	.	PASS	END=85777300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	85777627	.	A	.	.	PASS	END=85777654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	85777655	.	G	.	.	PASS	END=85777690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	85777691	.	C	.	.	PASS	END=85777790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	85777791	.	C	.	.	PASS	END=85777826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:82:60
chr2	85777827	.	T	.	.	PASS	END=85777887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	85777888	.	G	.	.	PASS	END=85777924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr2	85777997	.	C	.	.	PASS	END=85778030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	85778031	.	A	.	.	PASS	END=85778138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	85778139	.	G	.	.	PASS	END=85778169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	85778170	.	A	.	.	PASS	END=85778179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	85778180	.	A	.	.	PASS	END=85778192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr2	85778193	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:46:18:60
chr2	85778194	.	A	.	.	PASS	END=85778243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:60
chr2	85778244	.	A	.	.	PASS	END=85778245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	85778246	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:56:60
chr2	85778552	.	G	.	.	PASS	END=85778597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	85778598	.	A	.	.	PASS	END=85778632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	85778633	.	G	.	.	PASS	END=85778709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	85778710	.	T	.	.	PASS	END=85778782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	85778783	.	A	.	.	PASS	END=85778784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	85778884	.	A	.	.	PASS	END=85778961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	85778962	.	C	.	.	PASS	END=85779005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	85779006	.	C	.	.	PASS	END=85779040;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	85779041	.	C	.	.	PASS	END=85779073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:85:60
chr2	85779074	.	C	.	.	PASS	END=85779091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr2	85779092	.	A	.	.	PASS	END=85779097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:60
chr2	85779098	.	A	.	.	PASS	END=85779108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	85779109	.	G	.	.	PASS	END=85779110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	85779111	.	A	.	.	PASS	END=85779118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	85779119	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:42:60
chr2	85779120	.	C	.	.	PASS	END=85779131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr2	85779132	.	A	.	.	PASS	END=85779134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr2	85779135	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:29:60
chr2	85779136	.	C	.	.	PASS	END=85779143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	85779144	.	C	.	.	PASS	END=85779155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr2	85779488	.	G	.	.	PASS	END=85779497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr2	85779498	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:57:60
chr2	85779499	.	T	.	.	PASS	END=85779513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:93:60
chr2	85779514	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:70:60
chr2	85779515	.	C	.	.	PASS	END=85779537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	85779538	.	C	.	.	PASS	END=85779556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	85779557	.	T	.	.	PASS	END=85779670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	85779671	.	C	.	.	PASS	END=85779690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	85779691	.	C	.	.	PASS	END=85779714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:59
chr2	85779715	.	C	.	.	PASS	END=85779732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr2	85779733	.	C	.	.	PASS	END=85779741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr2	85780011	.	A	.	.	PASS	END=85780012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr2	85780013	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:42:60
chr2	85780014	.	A	.	.	PASS	END=85780023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr2	85780024	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:45:60
chr2	85780025	.	C	.	.	PASS	END=85780063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr2	85780064	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:72:60
chr2	85780065	.	A	.	.	PASS	END=85780079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	85780080	.	C	.	.	PASS	END=85780101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	85780102	.	C	.	.	PASS	END=85780106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	85780107	.	G	A	2774.70	PASS	DP=99;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=8.5648;MQ=60;MQ0=0;QD=28.03;SB=-1621.16	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,99:99:99:2808,205,0:60:99:1.000
chr2	85780108	.	G	.	.	PASS	END=85780229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	85780230	.	T	.	.	PASS	END=85780244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	85780304	.	C	.	.	PASS	END=85780335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	85780336	.	C	.	.	PASS	END=85780438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	85780439	.	C	.	.	PASS	END=85780496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	85780497	.	T	.	.	PASS	END=85780552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	85780553	.	C	.	.	PASS	END=85780588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	85780589	.	G	.	.	PASS	END=85780613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	85780614	.	A	.	.	PASS	END=85780621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr2	85780622	.	T	.	.	PASS	END=85780661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	85780662	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:51:60
chr2	85780663	.	G	.	.	PASS	END=85780667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr2	85780668	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:51:60
chr2	85780669	.	C	.	.	PASS	END=85780671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr2	85781215	.	C	.	.	PASS	END=85781249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:82:60
chr2	85781250	.	G	.	.	PASS	END=85781270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	85781271	.	C	.	.	PASS	END=85781317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	85781318	.	T	G	2925.95	PASS	DP=111;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=3.7877;MQ=60;MQ0=0;QD=26.36;SB=-1767.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,111:111:99:2959,223,0:60:99:1.000
chr2	85781319	.	C	.	.	PASS	END=85781380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	85781381	.	A	.	.	PASS	END=85781402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	85781403	.	C	.	.	PASS	END=85781421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr2	85781422	.	A	.	.	PASS	END=85781432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	85781433	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:57:60
chr2	85781434	.	A	.	.	PASS	END=85781461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr2	85781462	.	C	.	.	PASS	END=85781478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr2	85781479	.	C	.	.	PASS	END=85781480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:60
chr2	85782556	.	C	.	.	PASS	END=85782558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr2	85782559	.	G	.	.	PASS	END=85782561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:96:60
chr2	85782562	.	C	.	.	PASS	END=85782584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	85782585	.	C	.	.	PASS	END=85782644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:97:60
chr2	85782645	.	C	.	.	PASS	END=85782710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	85782711	.	G	.	.	PASS	END=85782745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	85782746	.	A	.	.	PASS	END=85782764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:88:60
chr2	85783254	.	C	.	.	PASS	END=85783276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:90:60
chr2	85783277	.	C	.	.	PASS	END=85783382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:84:60
chr2	85783383	.	C	.	.	PASS	END=85783389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	85783390	.	C	.	.	PASS	END=85783405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr2	85783406	.	T	.	.	PASS	END=85783422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr2	85783423	.	A	.	.	PASS	END=85783426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr2	85783427	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:90:60
chr2	85783428	.	A	.	.	PASS	END=85783431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	85783432	.	A	.	.	PASS	END=85783434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr2	85785512	.	T	.	.	PASS	END=85785518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr2	85785519	.	C	.	.	PASS	END=85785522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr2	85785523	.	A	.	.	PASS	END=85785532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr2	85785533	.	C	.	.	PASS	END=85785537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr2	85785538	.	C	.	.	PASS	END=85785539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:42:60
chr2	85785540	.	C	.	.	PASS	END=85785541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	85785542	.	T	.	.	PASS	END=85785543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:45:60
chr2	85785544	.	T	.	.	PASS	END=85785550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:51:60
chr2	85785551	.	C	.	.	PASS	END=85785552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr2	85785553	.	T	.	.	PASS	END=85785555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:54:60
chr2	85785556	.	C	.	.	PASS	END=85785559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:69:60
chr2	85785560	.	T	.	.	PASS	END=85785575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:84:60
chr2	85785576	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:69:60
chr2	85785577	.	A	.	.	PASS	END=85785622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	85785623	.	T	.	.	PASS	END=85785672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	85785673	.	C	.	.	PASS	END=85785709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	85785710	.	A	.	.	PASS	END=85785743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr2	85785744	.	A	.	.	PASS	END=85785765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:78:60
chr2	85785766	.	T	.	.	PASS	END=85785775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	85785776	.	C	.	.	PASS	END=85785777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr2	85785778	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:37:60
chr2	85785779	.	A	.	.	PASS	END=85785782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr2	85785783	.	T	.	.	PASS	END=85785784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr2	85785785	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:38:60
chr2	85785786	.	C	.	.	PASS	END=85785798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	85785799	.	T	.	.	PASS	END=85785822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr2	85785823	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:42:60
chr2	85785989	.	T	.	.	PASS	END=85786024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	85786025	.	C	.	.	PASS	END=85786036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	85786037	.	C	.	.	PASS	END=85786064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	85786065	.	A	.	.	PASS	END=85786187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	85786188	.	C	.	.	PASS	END=85786213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	85786214	.	G	.	.	PASS	END=85786249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	85787887	.	T	.	.	PASS	END=85787898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	85787899	.	C	.	.	PASS	END=85787916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr2	85787917	.	C	.	.	PASS	END=85787924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:66:60
chr2	85787925	.	A	.	.	PASS	END=85787973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:75:60
chr2	85787974	.	C	.	.	PASS	END=85788001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr2	85788002	.	C	.	.	PASS	END=85788058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:82:60
chr2	85788059	.	G	.	.	PASS	END=85788134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:93:60
chr2	85788135	.	G	.	.	PASS	END=85788158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr2	85788159	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:99:60
chr2	85788458	.	A	.	.	PASS	END=85788502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:78:60
chr2	85788503	.	G	.	.	PASS	END=85788587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:93:60
chr2	85788588	.	C	.	.	PASS	END=85788602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:87:60
chr2	85804722	.	G	.	.	LowGQX	END=85804821	GT	./.
chr2	85806100	.	C	.	.	LowGQX	END=85806194	GT	./.
chr2	85806195	.	G	.	.	LowGQX	END=85806277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85806278	.	T	.	.	LowGQX	.	GT	./.
chr2	85806279	.	C	.	.	LowGQX	END=85806283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85806284	.	A	.	.	LowGQX	.	GT	./.
chr2	85806285	.	G	.	.	LowGQX	END=85806287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85806288	.	A	.	.	LowGQX	.	GT	./.
chr2	85806289	.	C	.	.	LowGQX	END=85806292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85806864	.	G	.	.	LowGQX	END=85806997	GT	./.
chr2	85808697	.	A	.	.	LowGQX	END=85808841	GT	./.
chr2	85811506	.	C	.	.	LowGQX	END=85811665	GT	./.
chr2	85818846	.	A	.	.	LowGQX	END=85818987	GT	./.
chr2	85820069	.	A	.	.	LowGQX	END=85820179	GT	./.
chr2	85820180	.	T	.	.	LowGQX	END=85820279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85820280	.	A	.	.	LowGQX	.	GT	./.
chr2	85820281	.	C	.	.	LowGQX	END=85820282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85822880	.	G	.	.	LowGQX	END=85822911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85822912	.	A	.	.	LowGQX	.	GT	./.
chr2	85822913	.	C	.	.	LowGQX	END=85822979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85823640	.	A	.	.	LowGQX	END=85823774	GT	./.
chr2	85823850	.	T	.	.	LowGQX	END=85824056	GT	./.
chr2	85824076	.	C	.	.	LowGQX	END=85824294	GT	./.
chr2	85824295	.	A	.	.	LowGQX	END=85824311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85824312	.	A	.	.	LowGQX	END=85824313	GT	./.
chr2	85824314	.	G	.	.	LowGQX	END=85824315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85824316	.	T	.	.	LowGQX	END=85824317	GT	./.
chr2	85824318	.	A	.	.	LowGQX	END=85824319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85824566	.	A	.	.	LowGQX	END=85824569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85824570	.	T	.	.	LowGQX	.	GT	./.
chr2	85824571	.	C	.	.	LowGQX	END=85824579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85824580	.	C	.	.	LowGQX	END=85824581	GT	./.
chr2	85824582	.	G	.	.	LowGQX	END=85824590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85824591	.	C	.	.	LowGQX	.	GT	./.
chr2	85824592	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85824593	.	G	.	.	LowGQX	.	GT	./.
chr2	85824594	.	A	.	.	LowGQX	END=85824602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85824603	.	C	.	.	LowGQX	.	GT	./.
chr2	85824604	.	C	.	.	LowGQX	END=85824606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85824607	.	C	.	.	LowGQX	.	GT	./.
chr2	85824608	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85824609	.	T	.	.	LowGQX	.	GT	./.
chr2	85824610	.	G	.	.	LowGQX	END=85824624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85824625	.	T	.	.	LowGQX	.	GT	./.
chr2	85824626	.	G	.	.	LowGQX	END=85824629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85824630	.	A	.	.	LowGQX	END=85824685	GT	./.
chr2	85826197	.	C	.	.	LowGQX	END=85826400	GT	./.
chr2	85826401	.	T	.	.	LowGQX	END=85826442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826646	.	A	.	.	LowGQX	END=85826652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826653	.	A	.	.	LowGQX	END=85826708	GT	./.
chr2	85826709	.	G	.	.	LowGQX	END=85826711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826712	.	C	.	.	LowGQX	.	GT	./.
chr2	85826713	.	A	.	.	LowGQX	END=85826722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826723	.	T	.	.	LowGQX	.	GT	./.
chr2	85826724	.	G	.	.	LowGQX	END=85826725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826726	.	C	.	.	LowGQX	.	GT	./.
chr2	85826727	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826728	.	C	.	.	LowGQX	.	GT	./.
chr2	85826729	.	C	.	.	LowGQX	END=85826737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826738	.	A	.	.	LowGQX	.	GT	./.
chr2	85826739	.	G	.	.	LowGQX	END=85826741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826742	.	A	.	.	LowGQX	.	GT	./.
chr2	85826743	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826744	.	C	.	.	LowGQX	.	GT	./.
chr2	85826745	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826746	.	C	.	.	LowGQX	END=85826747	GT	./.
chr2	85826748	.	G	.	.	LowGQX	END=85826750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826751	.	C	.	.	LowGQX	END=85826752	GT	./.
chr2	85826753	.	G	.	.	LowGQX	END=85826755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826756	.	A	.	.	LowGQX	END=85826758	GT	./.
chr2	85826759	.	C	.	.	LowGQX	END=85826760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826761	.	A	.	.	LowGQX	.	GT	./.
chr2	85826762	.	A	.	.	LowGQX	END=85826763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826764	.	A	.	.	LowGQX	.	GT	./.
chr2	85826765	.	G	.	.	LowGQX	END=85826766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826767	.	A	.	.	LowGQX	.	GT	./.
chr2	85826768	.	G	.	.	LowGQX	END=85826774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826775	.	A	.	.	LowGQX	.	GT	./.
chr2	85826776	.	G	.	.	LowGQX	END=85826778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826779	.	A	.	.	LowGQX	END=85826781	GT	./.
chr2	85826782	.	G	.	.	LowGQX	END=85826784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826785	.	A	.	.	LowGQX	.	GT	./.
chr2	85826786	.	C	.	.	LowGQX	END=85826787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826788	.	C	.	.	LowGQX	.	GT	./.
chr2	85826789	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826790	.	A	.	.	LowGQX	.	GT	./.
chr2	85826791	.	G	.	.	LowGQX	END=85826792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826793	.	T	.	.	LowGQX	.	GT	./.
chr2	85826794	.	C	.	.	LowGQX	END=85826795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826796	.	A	.	.	LowGQX	END=85826797	GT	./.
chr2	85826798	.	C	.	.	LowGQX	END=85826799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826800	.	T	.	.	LowGQX	.	GT	./.
chr2	85826801	.	A	.	.	LowGQX	END=85826809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826810	.	A	.	.	LowGQX	END=85826811	GT	./.
chr2	85826812	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826813	.	T	.	.	LowGQX	END=85826814	GT	./.
chr2	85826815	.	G	.	.	LowGQX	END=85826816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826817	.	A	.	.	LowGQX	.	GT	./.
chr2	85826818	.	T	.	.	LowGQX	END=85826819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826820	.	A	.	.	LowGQX	.	GT	./.
chr2	85826821	.	T	.	.	LowGQX	END=85826823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85826824	.	A	.	.	LowGQX	END=85826825	GT	./.
chr2	85826826	.	C	.	.	LowGQX	END=85826827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85827012	.	A	.	.	LowGQX	END=85827143	GT	./.
chr2	85827452	.	T	.	.	LowGQX	END=85827551	GT	./.
chr2	85828078	.	C	.	.	LowGQX	END=85828291	GT	./.
chr2	85828445	.	G	.	.	LowGQX	END=85828554	GT	./.
chr2	85828555	.	T	.	.	LowGQX	END=85828574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85828575	.	T	.	.	LowGQX	.	GT	./.
chr2	85828576	.	A	.	.	LowGQX	END=85828607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85828990	.	C	.	.	LowGQX	END=85829089	GT	./.
chr2	85836066	.	G	.	.	LowGQX	END=85836069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85836070	.	A	.	.	LowGQX	.	GT	./.
chr2	85836071	.	G	.	.	LowGQX	END=85836074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85836075	.	T	.	.	LowGQX	.	GT	./.
chr2	85836076	.	G	.	.	LowGQX	END=85836079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85836080	.	C	.	.	LowGQX	END=85836131	GT	./.
chr2	85836132	.	G	.	.	LowGQX	END=85836189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85836190	.	C	.	.	LowGQX	.	GT	./.
chr2	85836191	.	C	.	.	LowGQX	END=85836192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85836556	.	A	.	.	LowGQX	END=85836711	GT	./.
chr2	85838621	.	T	.	.	LowGQX	END=85839133	GT	./.
chr2	85839416	.	C	.	.	LowGQX	END=85839515	GT	./.
chr2	85843317	.	A	.	.	LowGQX	END=85843588	GT	./.
chr2	85846328	.	T	.	.	LowGQX	END=85846357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85846358	.	T	.	.	LowGQX	.	GT	./.
chr2	85846359	.	G	.	.	LowGQX	END=85846401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85846402	.	A	.	.	LowGQX	END=85846419	GT	./.
chr2	85846420	.	G	.	.	LowGQX	END=85846427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85848606	.	A	.	.	LowGQX	END=85848705	GT	./.
chr2	85850748	.	G	.	.	LowGQX	END=85850836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85850837	.	C	.	.	LowGQX	.	GT	./.
chr2	85850838	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85850839	.	C	.	.	LowGQX	.	GT	./.
chr2	85850840	.	A	.	.	LowGQX	END=85850857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85850858	.	C	.	.	LowGQX	.	GT	./.
chr2	85850859	.	T	.	.	LowGQX	END=85850874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85850875	.	G	.	.	LowGQX	.	GT	./.
chr2	85850876	.	A	.	.	LowGQX	END=85850893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85850894	.	G	.	.	LowGQX	END=85850895	GT	./.
chr2	85850896	.	G	.	.	LowGQX	END=85850907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85852630	.	T	.	.	LowGQX	END=85852816	GT	./.
chr2	85857842	.	A	.	.	LowGQX	END=85857843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85857844	.	G	.	.	LowGQX	.	GT	./.
chr2	85857845	.	C	.	.	LowGQX	END=85857856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85857857	.	T	.	.	LowGQX	.	GT	./.
chr2	85857858	.	T	.	.	LowGQX	END=85857883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85857884	.	A	.	.	LowGQX	.	GT	./.
chr2	85857885	.	A	.	.	LowGQX	END=85857897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85857898	.	A	.	.	LowGQX	.	GT	./.
chr2	85857899	.	A	.	.	LowGQX	END=85857901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85857902	.	A	.	.	LowGQX	.	GT	./.
chr2	85857903	.	C	.	.	LowGQX	END=85857910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85857911	.	G	.	.	LowGQX	.	GT	./.
chr2	85857912	.	T	.	.	LowGQX	END=85857916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85857917	.	C	.	.	LowGQX	.	GT	./.
chr2	85857918	.	A	.	.	LowGQX	END=85857919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85857920	.	G	.	.	LowGQX	.	GT	./.
chr2	85857921	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85857922	.	G	.	.	LowGQX	.	GT	./.
chr2	85857923	.	A	.	.	LowGQX	END=85857940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85857941	.	T	.	.	LowGQX	.	GT	./.
chr2	85857942	.	C	.	.	LowGQX	END=85857955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85857956	.	A	.	.	LowGQX	END=85858071	GT	./.
chr2	85863165	.	T	.	.	LowGQX	END=85863264	GT	./.
chr2	85864476	.	C	.	.	LowGQX	END=85864514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85864515	.	G	.	.	LowGQX	.	GT	./.
chr2	85864516	.	G	.	.	LowGQX	END=85864575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	85866324	.	A	.	.	LowGQX	END=85866326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85866327	.	C	.	.	LowGQX	.	GT	./.
chr2	85866328	.	A	.	.	LowGQX	END=85866331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85866332	.	G	.	.	LowGQX	END=85866351	GT	./.
chr2	85866352	.	C	.	.	LowGQX	END=85866358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85866359	.	G	.	.	LowGQX	.	GT	./.
chr2	85866360	.	A	.	.	LowGQX	END=85866370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85866371	.	G	.	.	LowGQX	.	GT	./.
chr2	85866372	.	A	.	.	LowGQX	END=85866379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85866380	.	G	.	.	LowGQX	END=85866446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	85866447	.	A	.	8.19	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.02:60:0
chr2	85866448	.	G	.	.	LowGQX	END=85866449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	85866450	.	A	.	13.53	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.09:60:0
chr2	85866451	.	G	.	.	LowGQX	END=85866501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr2	85866502	.	C	.	.	LowGQX	END=85866516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85868097	.	A	.	.	LowGQX	END=85868286	GT	./.
chr2	85872069	.	A	.	.	LowGQX	END=85872221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85875047	.	C	.	.	LowGQX	END=85875146	GT	./.
chr2	85875792	.	G	.	.	LowGQX	END=85875951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85875952	.	C	.	.	LowGQX	END=85875953	GT	./.
chr2	85875954	.	C	.	.	LowGQX	END=85875957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85888545	.	T	.	.	PASS	END=85888669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:81:60
chr2	85888670	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:99:60
chr2	85888671	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:58:60
chr2	85888672	.	A	.	.	PASS	END=85888687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr2	85888688	.	C	.	.	PASS	END=85888704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:60
chr2	85888705	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:47:60
chr2	85888706	.	C	.	.	PASS	END=85888707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr2	85888708	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:30:60
chr2	85888709	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:75:60
chr2	85889101	.	G	.	.	PASS	END=85889126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr2	85889127	.	G	.	.	PASS	END=85889148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr2	85889149	.	T	.	.	PASS	END=85889242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr2	85889243	.	A	.	.	PASS	END=85889260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr2	85889261	.	G	.	.	PASS	END=85889281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	85889282	.	T	.	.	PASS	END=85889283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	85890418	.	T	.	.	PASS	END=85890449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	85890450	.	C	.	.	PASS	END=85890498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	85890499	.	G	.	.	PASS	END=85890555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr2	85890556	.	C	.	.	PASS	END=85890642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr2	85890643	.	A	.	.	PASS	END=85890664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr2	85890665	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:158:99:60
chr2	85890736	.	A	.	.	PASS	END=85890757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	85890758	.	T	C	1385.49	PASS	BaseQRankSum=1.215;DP=142;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=33.3526;MQ=60;MQ0=0;MQRankSum=1.173;QD=9.76;ReadPosRankSum=-0.093;SB=-683.52	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:81,59:142:99:1415,0,1866:60:99:0.421
chr2	85890759	.	T	.	.	PASS	END=85890770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	85890771	.	T	G	1225.67	PASS	BaseQRankSum=-0.809;DP=145;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=33.2140;MQ=60;MQ0=0;MQRankSum=1.133;QD=8.45;ReadPosRankSum=-0.841;SB=-536.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:78,65:145:99:1256,0,1698:60:99:0.455
chr2	85890772	.	G	.	.	PASS	END=85890802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	85890803	.	A	.	.	PASS	END=85890875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr2	85890876	.	A	.	.	PASS	END=85890908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	85890909	.	A	.	.	PASS	END=85890940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	85890941	.	C	.	.	PASS	END=85890951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	85890952	.	C	.	.	PASS	END=85890964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	85890965	.	C	.	.	PASS	END=85890968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:60
chr2	85890969	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:70:60
chr2	85890970	.	C	.	.	PASS	END=85890989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr2	85890990	.	A	.	.	PASS	END=85891003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	85891004	.	C	.	.	PASS	END=85891007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr2	85891008	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:54:60
chr2	85891009	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:87:60
chr2	85891010	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:45:60
chr2	85891011	.	T	.	.	PASS	END=85891020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr2	85891021	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:69:60
chr2	85892361	.	G	.	.	PASS	END=85892374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	85892375	.	T	.	.	PASS	END=85892391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	85892392	.	T	.	.	PASS	END=85892516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr2	85892517	.	G	.	.	PASS	END=85892530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr2	85892531	.	T	.	.	PASS	END=85892552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	85892678	.	G	.	.	PASS	END=85892720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	85892721	.	T	.	.	PASS	END=85892751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	85892752	.	C	.	.	PASS	END=85892790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	85892791	.	C	.	.	PASS	END=85892885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	85892886	.	A	.	.	PASS	END=85892903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	85892904	.	A	.	.	PASS	END=85892931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	85892932	.	A	.	.	PASS	END=85892941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	85892942	.	T	.	.	PASS	END=85892949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr2	85892950	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:42:60
chr2	85892951	.	C	.	.	PASS	END=85892952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr2	85892953	.	G	.	.	PASS	END=85892968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	85893689	.	C	.	.	PASS	END=85893717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	85893718	.	G	.	.	PASS	END=85893740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	85893741	.	G	A	1127.47	PASS	BaseQRankSum=1.920;DP=102;Dels=0.00;FS=7.387;HRun=1;HaplotypeScore=20.9597;MQ=60;MQ0=0;MQRankSum=-1.547;QD=11.05;ReadPosRankSum=1.312;SB=-682.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:47,53:102:99:1157,0,1052:60:99:0.530
chr2	85893742	.	T	.	.	PASS	END=85893822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	85893823	.	G	.	.	PASS	END=85893841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	85893842	.	C	T	888.65	PASS	BaseQRankSum=2.455;DP=73;Dels=0.00;FS=2.155;HRun=1;HaplotypeScore=8.6782;MQ=60;MQ0=0;MQRankSum=-0.549;QD=12.17;ReadPosRankSum=0.659;SB=-304.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:40,33:73:99:919,0,797:60:99:0.452
chr2	85893843	.	T	.	.	PASS	END=85893870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	85893871	.	A	.	.	PASS	END=85893907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr2	85893908	.	C	.	.	PASS	END=85893916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr2	85894178	.	G	.	.	PASS	END=85894313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	85894314	.	G	.	.	PASS	END=85894324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	85894325	.	G	.	.	PASS	END=85894345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	85894346	.	G	.	.	PASS	END=85894351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	85894751	.	G	.	.	PASS	END=85894755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr2	85894756	.	C	.	.	PASS	END=85894788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr2	85894789	.	T	.	.	PASS	END=85894836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:87:60
chr2	85894837	.	G	.	.	PASS	END=85894959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	85894960	.	A	.	.	PASS	END=85894980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	85895189	.	C	.	.	PASS	END=85895207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	85895208	.	G	.	.	PASS	END=85895250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr2	85895251	.	C	.	.	PASS	END=85895330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	85895331	.	T	.	.	PASS	END=85895350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	85895351	.	A	.	.	PASS	END=85895358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	85895359	.	G	.	.	PASS	END=85895360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	85921518	.	A	.	.	LowGQX	END=85921617	GT	./.
chr2	85922029	.	T	.	.	LowGQX	END=85922038	GT	./.
chr2	85922039	.	G	.	.	LowGQX	END=85922128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85922441	.	A	.	.	LowGQX	END=85922537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85922538	.	G	.	.	LowGQX	END=85922548	GT	./.
chr2	85923079	.	A	.	.	LowGQX	END=85923181	GT	./.
chr2	85924627	.	A	.	.	LowGQX	END=85924717	GT	./.
chr2	85924718	.	G	.	.	LowGQX	END=85924736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85924737	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	85924738	.	T	.	.	LowGQX	END=85924802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85925496	.	G	.	.	LowGQX	END=85925595	GT	./.
chr2	85925685	.	A	.	.	LowGQX	END=85925870	GT	./.
chr2	85981311	.	C	.	.	LowGQX	END=85981367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	85981368	.	A	.	.	LowGQX	END=85982082	GT	./.
chr2	85991112	.	A	.	.	LowGQX	END=85991176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	85991177	.	T	.	.	LowGQX	END=85991307	GT	./.
chr2	85999741	.	A	.	.	LowGQX	END=86000031	GT	./.
chr2	86013961	.	A	.	.	LowGQX	END=86014006	GT	./.
chr2	86014007	.	G	.	.	LowGQX	END=86014017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86014018	.	C	.	.	LowGQX	.	GT	./.
chr2	86014019	.	T	.	.	LowGQX	END=86014023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86014024	.	G	.	.	LowGQX	.	GT	./.
chr2	86014025	.	C	.	.	LowGQX	END=86014038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86014039	.	C	.	.	LowGQX	.	GT	./.
chr2	86014040	.	C	.	.	LowGQX	END=86014041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86014042	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	86014043	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86014044	.	G	.	.	LowGQX	.	GT	./.
chr2	86014045	.	T	.	.	LowGQX	END=86014047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86014048	.	G	.	.	LowGQX	END=86014051	GT	./.
chr2	86014052	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86014053	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	86014054	.	C	.	.	LowGQX	END=86014057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86014058	.	C	.	.	LowGQX	.	GT	./.
chr2	86014059	.	A	.	.	LowGQX	END=86014060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86067216	.	A	.	.	PASS	END=86067220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr2	86067221	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:54:60
chr2	86067222	.	A	.	.	PASS	END=86067229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:93:60
chr2	86067230	.	G	.	.	PASS	END=86067251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	86067252	.	T	.	.	PASS	END=86067272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:96:60
chr2	86067273	.	T	.	.	PASS	END=86067323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	86067324	.	C	.	.	PASS	END=86067395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	86067396	.	G	.	.	PASS	END=86067423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	86067424	.	T	.	.	PASS	END=86067473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:93:60
chr2	86067474	.	T	.	.	PASS	END=86067485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:60
chr2	86067486	.	A	.	.	PASS	END=86067495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr2	86067496	.	A	.	.	PASS	END=86067514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr2	86067515	.	T	.	.	PASS	END=86067527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	86067528	.	A	.	.	PASS	END=86067535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	86067536	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:27:60
chr2	86067537	.	C	.	.	PASS	END=86067576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr2	86067577	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:42:60
chr2	86067578	.	T	.	.	PASS	END=86067588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr2	86067589	.	A	.	.	PASS	END=86067591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr2	86067592	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:18:60
chr2	86067593	.	T	.	.	PASS	END=86067599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr2	86067600	.	A	.	.	PASS	END=86067603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	86067604	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	86067605	.	T	.	.	PASS	END=86067607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	86067608	.	A	.	.	LowGQX	END=86067622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	86067623	.	C	.	.	LowGQX	END=86067638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	86071468	.	A	.	.	PASS	END=86071507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	86071508	.	A	.	.	PASS	END=86071549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	86071550	.	T	.	.	PASS	END=86071555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	86071556	.	T	.	.	PASS	END=86071599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	86071600	.	C	.	.	PASS	END=86071703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	86071704	.	A	.	.	PASS	END=86071717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	86071718	.	G	.	.	PASS	END=86071728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	86073449	.	G	.	.	PASS	END=86073474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	86073475	.	A	.	.	PASS	END=86073521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	86073522	.	G	.	.	PASS	END=86073670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	86073671	.	T	.	.	PASS	END=86073688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	86073689	.	A	.	.	PASS	END=86073728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr2	86073729	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:75:60
chr2	86073730	.	A	.	.	PASS	END=86073737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	86074933	.	A	.	.	LowGQX	END=86074941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	86074942	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr2	86074943	.	A	.	.	LowGQX	END=86074952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	86074953	.	G	.	.	LowGQX	END=86074954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	86074955	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr2	86074956	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr2	86074957	.	A	.	.	LowGQX	END=86074969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	86074970	.	A	.	.	LowGQX	END=86074972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	86074973	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr2	86074974	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:1:60
chr2	86074975	.	C	.	.	LowGQX	END=86074978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	86074979	.	T	.	.	LowGQX	END=86074981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	86074982	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:1:60
chr2	86074983	.	C	.	.	LowGQX	END=86074984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr2	86074985	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr2	86074986	.	T	.	.	LowGQX	END=86074989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	86074990	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr2	86074991	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr2	86074992	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:1:60
chr2	86074993	.	A	.	.	LowGQX	END=86074999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	86075000	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr2	86075001	.	C	.	.	LowGQX	END=86075002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	86075003	.	G	.	.	PASS	END=86075008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	86075009	.	G	.	.	PASS	END=86075020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr2	86075021	.	G	.	.	PASS	END=86075031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr2	86075032	.	T	.	.	PASS	END=86075050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	86075051	.	C	.	.	PASS	END=86075063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	86075064	.	G	.	.	PASS	END=86075088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	86075089	.	T	.	.	PASS	END=86075116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	86075117	.	G	.	.	PASS	END=86075203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr2	86075204	.	C	.	.	PASS	END=86075234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	86075235	.	A	.	.	PASS	END=86075239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	86075240	.	T	.	.	PASS	END=86075250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	86075251	.	A	.	.	PASS	END=86075295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:60
chr2	86075296	.	T	.	.	PASS	END=86075302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	86075303	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:67:60
chr2	86075304	.	T	.	.	PASS	END=86075324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:90:60
chr2	86075325	.	T	.	.	PASS	END=86075329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr2	86075330	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:33:60
chr2	86075331	.	G	.	.	PASS	END=86075339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr2	86075340	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:30:60
chr2	86075341	.	A	.	.	PASS	END=86075350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr2	86075351	.	G	.	.	PASS	END=86075378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	86075446	.	T	.	.	LowGQX	END=86075449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr2	86075450	.	C	.	.	LowGQX	END=86075452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr2	86075453	.	A	.	.	LowGQX	END=86075454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr2	86075455	.	A	.	.	PASS	END=86075456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	86075457	.	T	.	.	LowGQX	END=86075458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr2	86075459	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	86075460	.	T	.	.	LowGQX	END=86075462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	86075463	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	86075464	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr2	86075465	.	T	.	.	LowGQX	END=86075466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr2	86075467	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:21:60
chr2	86075468	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	86075469	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:12:60
chr2	86075470	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	86075471	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr2	86075472	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	86075473	.	T	.	.	LowGQX	END=86075474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:15:60
chr2	86075475	.	A	.	.	LowGQX	END=86075476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr2	86075477	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:9:60
chr2	86075478	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr2	86075479	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:0:60
chr2	86075480	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr2	86075481	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr2	86075482	.	G	.	51.06	LowGQX	DP=10;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:21.07:60:21
chr2	86075483	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	86075484	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr2	86075485	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	86075486	.	A	.	.	LowGQX	END=86075487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr2	86075488	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	86075489	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	86075490	.	A	.	.	LowGQX	END=86075492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	86075493	.	T	.	.	LowGQX	END=86075494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr2	86075495	.	A	.	.	LowGQX	END=86075497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	86075498	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	86075499	.	A	.	.	LowGQX	END=86075501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	86075502	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr2	86075503	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr2	86075504	.	C	.	.	PASS	END=86075505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	86075506	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	86075507	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr2	86075508	.	G	.	.	LowGQX	END=86075511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr2	86075512	.	A	.	.	PASS	END=86075513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	86075514	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	86075515	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	86075516	.	A	.	.	LowGQX	END=86075519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	86075520	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	86075521	.	A	.	.	LowGQX	END=86075522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr2	86075523	.	A	.	.	PASS	END=86075524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	86075525	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	86075526	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:12:60
chr2	86075527	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	86075528	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	86075529	.	A	.	.	LowGQX	END=86075530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	86075531	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	86075532	.	A	.	.	LowGQX	END=86075535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr2	86075536	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	86075537	.	A	.	.	LowGQX	END=86075538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr2	86075539	.	C	.	.	PASS	END=86075541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	86075542	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr2	86075543	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr2	86075544	.	T	.	.	LowGQX	END=86075545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	86078713	.	T	.	.	LowGQX	END=86078776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86078777	.	C	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	86078778	.	T	.	.	LowGQX	END=86078826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86079982	.	C	.	.	LowGQX	END=86080220	GT	./.
chr2	86088253	.	G	.	.	PASS	END=86088304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	86088305	.	T	.	.	PASS	END=86088364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	86088365	.	T	.	.	PASS	END=86088388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	86088389	.	C	.	.	PASS	END=86088401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr2	86088402	.	C	.	.	PASS	END=86088412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	86088413	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:45:60
chr2	86088414	.	A	.	.	PASS	END=86088439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr2	86088440	.	A	.	.	PASS	END=86088445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	86088446	.	T	.	.	PASS	END=86088453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	86088454	.	T	.	.	PASS	END=86088456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	86088457	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:2:60
chr2	86088458	.	A	.	.	PASS	END=86088466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	86090434	.	A	.	.	PASS	END=86090454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	86090455	.	G	.	.	PASS	END=86090476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	86090477	.	G	.	.	PASS	END=86090587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	86090588	.	A	.	.	PASS	END=86090605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	86090606	.	T	.	.	PASS	END=86090618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	86090619	.	A	.	.	PASS	END=86090656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	86090657	.	T	.	.	PASS	END=86090659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	86094677	.	A	.	.	PASS	END=86094756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	86094757	.	A	.	.	PASS	END=86094786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	86094787	.	T	.	.	PASS	END=86094791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	86097303	.	T	.	.	LowGQX	END=86097402	GT	./.
chr2	86107971	.	A	.	.	LowGQX	END=86108070	GT	./.
chr2	86115896	.	C	.	.	LowGQX	END=86115930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86115931	.	G	.	.	LowGQX	END=86115982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	86115983	.	G	.	.	LowGQX	END=86116047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr2	86116048	.	C	.	.	LowGQX	END=86116077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr2	86116078	.	A	.	10.84	LowGQX	DP=7;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:5:7:0.05:60:0
chr2	86116079	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr2	86254544	.	T	.	.	LowGQX	END=86254648	GT	./.
chr2	86255006	.	A	.	.	LowGQX	END=86255016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86255017	.	T	.	.	LowGQX	.	GT	./.
chr2	86255018	.	G	.	.	LowGQX	END=86255022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86255023	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	86255024	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86255025	.	T	.	.	LowGQX	.	GT	./.
chr2	86255026	.	T	.	.	LowGQX	END=86255036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86255037	.	A	.	.	LowGQX	.	GT	./.
chr2	86255038	.	A	.	.	LowGQX	END=86255043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86255044	.	T	.	.	LowGQX	.	GT	./.
chr2	86255045	.	T	.	.	LowGQX	END=86255051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86255052	.	G	.	.	LowGQX	.	GT	./.
chr2	86255053	.	T	.	.	LowGQX	END=86255077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86255078	.	T	.	.	LowGQX	END=86255174	GT	./.
chr2	86255715	.	A	.	.	LowGQX	END=86255836	GT	./.
chr2	86257317	.	A	.	.	LowGQX	END=86257521	GT	./.
chr2	86258451	.	A	.	.	LowGQX	END=86258629	GT	./.
chr2	86258630	.	G	.	.	LowGQX	END=86258632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86258633	.	C	.	.	LowGQX	.	GT	./.
chr2	86258634	.	A	.	.	LowGQX	END=86258635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86258636	.	C	.	.	LowGQX	.	GT	./.
chr2	86258637	.	T	.	.	LowGQX	END=86258645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86258646	.	T	.	.	LowGQX	.	GT	./.
chr2	86258647	.	G	.	.	LowGQX	END=86258655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86258656	.	T	.	.	LowGQX	.	GT	./.
chr2	86258657	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86258658	.	T	.	.	LowGQX	.	GT	./.
chr2	86258659	.	T	.	.	LowGQX	END=86258665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86258666	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	86258667	.	C	.	.	LowGQX	END=86258671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86258672	.	C	.	.	LowGQX	.	GT	./.
chr2	86258673	.	C	.	.	LowGQX	END=86258674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86258675	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	86258676	.	T	.	.	LowGQX	END=86258680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86258681	.	A	.	.	LowGQX	END=86258682	GT	./.
chr2	86258683	.	T	.	.	LowGQX	END=86258684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86258685	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	86258686	.	G	.	.	LowGQX	END=86258688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86258689	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	86258690	.	C	.	.	LowGQX	END=86258699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86258700	.	T	.	.	LowGQX	.	GT	./.
chr2	86258701	.	C	.	.	LowGQX	END=86258702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86258703	.	T	.	.	LowGQX	.	GT	./.
chr2	86258704	.	C	.	.	LowGQX	END=86258712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86258713	.	T	.	.	LowGQX	.	GT	./.
chr2	86258714	.	C	.	.	LowGQX	END=86258729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86258730	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	86258731	.	C	.	.	LowGQX	END=86258743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86258744	.	A	.	.	LowGQX	END=86258760	GT	./.
chr2	86259393	.	A	.	.	LowGQX	END=86259394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259395	.	C	.	.	LowGQX	END=86259396	GT	./.
chr2	86259397	.	C	.	.	LowGQX	END=86259402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259403	.	C	.	.	LowGQX	.	GT	./.
chr2	86259404	.	C	.	.	LowGQX	END=86259405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259406	.	G	.	.	LowGQX	.	GT	./.
chr2	86259407	.	C	.	.	LowGQX	END=86259420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259421	.	T	.	.	LowGQX	END=86259422	GT	./.
chr2	86259423	.	G	.	.	LowGQX	END=86259433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259434	.	A	.	.	LowGQX	END=86259435	GT	./.
chr2	86259436	.	C	.	.	LowGQX	END=86259437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259438	.	G	.	.	LowGQX	.	GT	./.
chr2	86259439	.	C	.	.	LowGQX	END=86259440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259441	.	T	.	.	LowGQX	.	GT	./.
chr2	86259442	.	C	.	.	LowGQX	END=86259445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259446	.	C	.	.	LowGQX	END=86259447	GT	./.
chr2	86259448	.	C	.	.	LowGQX	END=86259449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259450	.	T	.	.	LowGQX	.	GT	./.
chr2	86259451	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259452	.	A	.	.	LowGQX	END=86259453	GT	./.
chr2	86259454	.	C	.	.	LowGQX	END=86259456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259457	.	C	.	.	LowGQX	END=86259460	GT	./.
chr2	86259461	.	A	.	.	LowGQX	END=86259462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259463	.	C	.	.	LowGQX	.	GT	./.
chr2	86259464	.	C	.	.	LowGQX	END=86259468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259469	.	T	.	.	LowGQX	.	GT	./.
chr2	86259470	.	G	.	.	LowGQX	END=86259472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259473	.	C	.	.	LowGQX	END=86259474	GT	./.
chr2	86259475	.	C	.	.	LowGQX	END=86259476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259477	.	T	.	.	LowGQX	END=86259478	GT	./.
chr2	86259479	.	C	.	.	LowGQX	END=86259481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259482	.	T	.	.	LowGQX	.	GT	./.
chr2	86259483	.	T	.	.	LowGQX	END=86259488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259489	.	T	.	.	LowGQX	.	GT	./.
chr2	86259490	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259491	.	A	.	.	LowGQX	END=86259492	GT	./.
chr2	86259493	.	C	.	.	LowGQX	END=86259494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259495	.	T	.	.	LowGQX	.	GT	./.
chr2	86259496	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259497	.	C	.	.	LowGQX	.	GT	./.
chr2	86259498	.	T	.	.	LowGQX	END=86259503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259504	.	C	.	.	LowGQX	.	GT	./.
chr2	86259505	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86259506	.	C	.	.	LowGQX	END=86259507	GT	./.
chr2	86260782	.	A	.	.	LowGQX	.	GT	./.
chr2	86260783	.	C	.	.	LowGQX	END=86260786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86260787	.	A	.	.	LowGQX	.	GT	./.
chr2	86260788	.	C	.	.	LowGQX	END=86260882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86260883	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	86260884	.	A	.	.	LowGQX	END=86260912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86265821	.	A	.	.	LowGQX	END=86265982	GT	./.
chr2	86266448	.	A	.	.	LowGQX	END=86266506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86266507	.	T	.	.	LowGQX	END=86266583	GT	./.
chr2	86266584	.	A	.	.	LowGQX	END=86266587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86267513	.	A	.	.	LowGQX	END=86267613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86267614	.	A	.	.	LowGQX	.	GT	./.
chr2	86267615	.	G	.	.	LowGQX	END=86267620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86267621	.	C	.	.	LowGQX	.	GT	./.
chr2	86267622	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86267623	.	A	.	.	LowGQX	.	GT	./.
chr2	86267624	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86267625	.	A	.	.	LowGQX	.	GT	./.
chr2	86267626	.	G	.	.	LowGQX	END=86267632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86267633	.	C	.	.	LowGQX	END=86267684	GT	./.
chr2	86269010	.	A	.	.	LowGQX	END=86269228	GT	./.
chr2	86270095	.	A	.	.	LowGQX	END=86270320	GT	./.
chr2	86271260	.	A	.	.	LowGQX	END=86271465	GT	./.
chr2	86272393	.	C	.	.	LowGQX	END=86272450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86272451	.	C	.	.	LowGQX	END=86272492	GT	./.
chr2	86272687	.	A	.	.	LowGQX	END=86272725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86272726	.	A	.	.	LowGQX	.	GT	./.
chr2	86272727	.	C	.	.	LowGQX	END=86272803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86272804	.	T	.	.	LowGQX	END=86272824	GT	./.
chr2	86272825	.	G	.	.	LowGQX	END=86272884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86272885	.	C	.	.	LowGQX	END=86272927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	86274286	.	A	.	.	LowGQX	END=86274362	GT	./.
chr2	86274363	.	G	.	.	LowGQX	END=86274380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86274381	.	G	.	.	LowGQX	.	GT	./.
chr2	86274382	.	C	.	.	LowGQX	END=86274386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86274387	.	C	.	.	LowGQX	.	GT	./.
chr2	86274388	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86276005	.	A	.	.	LowGQX	END=86276167	GT	./.
chr2	86276275	.	C	.	.	LowGQX	END=86276374	GT	./.
chr2	86279938	.	A	.	.	LowGQX	END=86279953	GT	./.
chr2	86279954	.	C	.	.	LowGQX	END=86279977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86279978	.	A	.	.	LowGQX	.	GT	./.
chr2	86279979	.	A	.	.	LowGQX	END=86279999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86280000	.	G	.	.	LowGQX	END=86280002	GT	./.
chr2	86280003	.	C	.	.	LowGQX	END=86280009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86280010	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	86280011	.	C	.	.	LowGQX	END=86280019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86280020	.	C	.	.	LowGQX	.	GT	./.
chr2	86280021	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86280022	.	T	.	.	LowGQX	.	GT	./.
chr2	86280023	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86280024	.	C	.	.	LowGQX	.	GT	./.
chr2	86280025	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86280026	.	T	.	.	LowGQX	.	GT	./.
chr2	86280027	.	A	.	.	LowGQX	END=86280028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86280029	.	A	.	.	LowGQX	END=86280030	GT	./.
chr2	86280031	.	C	.	.	LowGQX	END=86280035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86280036	.	A	.	.	LowGQX	.	GT	./.
chr2	86280037	.	G	.	.	LowGQX	END=86280047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86280048	.	C	.	.	LowGQX	.	GT	./.
chr2	86280049	.	C	.	.	LowGQX	END=86280066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86280067	.	C	.	.	LowGQX	.	GT	./.
chr2	86280068	.	C	.	.	LowGQX	END=86280072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86280073	.	G	.	.	LowGQX	.	GT	./.
chr2	86280074	.	T	.	.	LowGQX	END=86280082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86280083	.	T	.	.	LowGQX	.	GT	./.
chr2	86280084	.	C	.	.	LowGQX	END=86280099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86280100	.	C	.	.	LowGQX	.	GT	./.
chr2	86280101	.	A	.	.	LowGQX	END=86280102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86280103	.	C	.	.	LowGQX	END=86280125	GT	./.
chr2	86281261	.	A	.	.	LowGQX	END=86281399	GT	./.
chr2	86281400	.	G	.	.	LowGQX	END=86281414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86292395	.	A	.	.	LowGQX	END=86292590	GT	./.
chr2	86297139	.	A	.	.	LowGQX	END=86297397	GT	./.
chr2	86302151	.	A	.	.	LowGQX	END=86302385	GT	./.
chr2	86304980	.	A	.	.	LowGQX	END=86305005	GT	./.
chr2	86305006	.	G	.	.	LowGQX	END=86305096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86305097	.	T	.	.	LowGQX	.	GT	./.
chr2	86305098	.	C	.	.	LowGQX	END=86305106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86305215	.	G	.	.	LowGQX	END=86305252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86305253	.	T	.	.	LowGQX	.	GT	./.
chr2	86305254	.	A	.	.	LowGQX	END=86305305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86305306	.	G	.	.	LowGQX	END=86305398	GT	./.
chr2	86305399	.	G	.	.	LowGQX	END=86305409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86307937	.	A	.	.	LowGQX	END=86308036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86308037	.	C	.	.	LowGQX	END=86308050	GT	./.
chr2	86308051	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86308052	.	T	.	.	LowGQX	.	GT	./.
chr2	86308053	.	C	.	.	LowGQX	END=86308060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86308061	.	T	.	.	LowGQX	.	GT	./.
chr2	86308062	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86308063	.	G	.	.	LowGQX	.	GT	./.
chr2	86308064	.	T	.	.	LowGQX	END=86308067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86308068	.	C	.	.	LowGQX	.	GT	./.
chr2	86308069	.	A	.	.	LowGQX	END=86308103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86308722	.	A	.	.	LowGQX	END=86308831	GT	./.
chr2	86310199	.	C	.	.	LowGQX	END=86310298	GT	./.
chr2	86315687	.	A	.	.	LowGQX	END=86315794	GT	./.
chr2	86315901	.	T	.	.	LowGQX	END=86316000	GT	./.
chr2	86316943	.	A	.	.	LowGQX	END=86317054	GT	./.
chr2	86325682	.	C	.	.	LowGQX	END=86325702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr2	86325703	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	86325704	.	T	.	.	LowGQX	END=86325734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86325735	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr2	86325736	.	T	.	.	LowGQX	END=86325745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86325746	.	T	.	.	LowGQX	END=86325747	GT	./.
chr2	86325748	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86325749	.	C	.	.	LowGQX	.	GT	./.
chr2	86325750	.	T	.	.	LowGQX	END=86325752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86325753	.	A	.	.	LowGQX	.	GT	./.
chr2	86325754	.	G	.	.	LowGQX	END=86325762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86325763	.	C	.	.	LowGQX	.	GT	./.
chr2	86325764	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86325765	.	G	.	.	LowGQX	.	GT	./.
chr2	86325766	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86325767	.	T	.	.	LowGQX	.	GT	./.
chr2	86325768	.	T	.	.	LowGQX	END=86325770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86325771	.	A	.	.	LowGQX	.	GT	./.
chr2	86325772	.	G	.	.	LowGQX	END=86325773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86325774	.	G	.	.	LowGQX	.	GT	./.
chr2	86325775	.	C	.	.	LowGQX	END=86325781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86325782	.	T	.	.	LowGQX	.	GT	./.
chr2	86325783	.	T	.	.	LowGQX	END=86325786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86325787	.	G	.	.	LowGQX	.	GT	./.
chr2	86325788	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86325789	.	A	.	.	LowGQX	.	GT	./.
chr2	86325790	.	C	.	.	LowGQX	END=86325791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86325792	.	C	.	.	LowGQX	.	GT	./.
chr2	86325793	.	T	.	.	LowGQX	END=86325794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86325795	.	A	.	.	LowGQX	.	GT	./.
chr2	86325796	.	G	.	.	LowGQX	END=86325812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86325813	.	T	.	.	LowGQX	.	GT	./.
chr2	86325814	.	G	.	.	LowGQX	END=86325817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86325818	.	C	.	.	LowGQX	END=86325930	GT	./.
chr2	86327089	.	A	.	.	LowGQX	END=86327297	GT	./.
chr2	86332812	.	C	.	.	LowGQX	END=86332823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86332824	.	T	.	.	LowGQX	END=86332911	GT	./.
chr2	86333313	.	C	.	.	LowGQX	END=86333315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86333316	.	A	.	.	LowGQX	.	GT	./.
chr2	86333317	.	C	.	.	LowGQX	END=86333318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86333319	.	T	.	.	LowGQX	END=86333476	GT	./.
chr2	86334233	.	T	.	.	LowGQX	END=86334332	GT	./.
chr2	86335450	.	T	.	.	LowGQX	END=86335549	GT	./.
chr2	86335592	.	A	.	.	LowGQX	END=86335663	GT	./.
chr2	86335664	.	G	.	.	LowGQX	END=86335691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86338058	.	G	.	.	LowGQX	END=86338157	GT	./.
chr2	86338209	.	G	.	.	LowGQX	END=86338308	GT	./.
chr2	86343638	.	A	.	.	LowGQX	END=86343737	GT	./.
chr2	86344176	.	A	.	.	LowGQX	END=86344284	GT	./.
chr2	86346042	.	A	.	.	LowGQX	END=86346211	GT	./.
chr2	86348600	.	A	.	.	LowGQX	END=86348675	GT	./.
chr2	86348676	.	A	.	.	LowGQX	END=86348684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86348685	.	C	.	.	LowGQX	.	GT	./.
chr2	86348686	.	A	.	.	LowGQX	END=86348706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86348707	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	86348708	.	A	.	.	LowGQX	END=86348717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86348718	.	G	.	.	LowGQX	.	GT	./.
chr2	86348719	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86350805	.	T	.	.	LowGQX	END=86350904	GT	./.
chr2	86352112	.	G	.	.	LowGQX	END=86352211	GT	./.
chr2	86352559	.	T	.	.	LowGQX	END=86352658	GT	./.
chr2	86352911	.	T	.	.	LowGQX	END=86353010	GT	./.
chr2	86354282	.	A	.	.	LowGQX	END=86354430	GT	./.
chr2	86355040	.	T	.	.	LowGQX	END=86355139	GT	./.
chr2	86357767	.	G	.	.	LowGQX	END=86357850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86357851	.	C	.	.	LowGQX	END=86357866	GT	./.
chr2	86358109	.	C	.	.	LowGQX	END=86358265	GT	./.
chr2	86359439	.	A	.	.	LowGQX	END=86359549	GT	./.
chr2	86360291	.	T	.	.	LowGQX	END=86360390	GT	./.
chr2	86360465	.	T	.	.	LowGQX	END=86360510	GT	./.
chr2	86360511	.	G	.	.	LowGQX	END=86360556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86360557	.	A	.	.	LowGQX	.	GT	./.
chr2	86360558	.	A	.	.	LowGQX	END=86360564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86361408	.	T	.	.	LowGQX	END=86361410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86361411	.	C	.	.	LowGQX	.	GT	./.
chr2	86361412	.	A	.	.	LowGQX	END=86361421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86361422	.	A	.	.	LowGQX	END=86361507	GT	./.
chr2	86361960	.	A	.	.	LowGQX	END=86362112	GT	./.
chr2	86362993	.	C	.	.	LowGQX	END=86363182	GT	./.
chr2	86363615	.	A	.	.	LowGQX	END=86363634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86363635	.	C	.	.	LowGQX	.	GT	./.
chr2	86363636	.	T	.	.	LowGQX	END=86363638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86363639	.	A	.	.	LowGQX	END=86363640	GT	./.
chr2	86363641	.	C	.	.	LowGQX	END=86363645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86363646	.	A	.	.	LowGQX	.	GT	./.
chr2	86363647	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86363648	.	A	.	.	LowGQX	.	GT	./.
chr2	86363649	.	T	.	.	LowGQX	END=86363652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86363653	.	G	.	.	LowGQX	END=86363714	GT	./.
chr2	86364073	.	G	.	.	LowGQX	END=86364265	GT	./.
chr2	86364588	.	A	.	.	LowGQX	END=86364687;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86371390	.	C	.	.	PASS	END=86371427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	86371428	.	G	.	.	PASS	END=86371493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	86371494	.	A	.	.	PASS	END=86371648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr2	86371649	.	T	.	.	PASS	END=86371747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr2	86371748	.	T	.	.	PASS	END=86371882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:315:99:60
chr2	86371883	.	T	C	4612.26	PASS	BaseQRankSum=-4.145;DP=396;Dels=0.00;FS=0.779;HRun=1;HaplotypeScore=27.6184;MQ=60;MQ0=0;MQRankSum=-0.272;QD=11.65;ReadPosRankSum=0.327;SB=-2421.70	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:212,183:396:99:4612,0,5657:60:99:0.463
chr2	86371884	.	G	.	.	PASS	END=86372003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:318:99:60
chr2	86372004	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:313:99:60
chr2	86373190	.	C	.	.	PASS	END=86373220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	86373221	.	T	.	.	PASS	END=86373231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	86373232	.	G	.	.	PASS	END=86373276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	86373277	.	C	.	.	PASS	END=86373320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	86374824	.	C	.	.	PASS	END=86374870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	86374871	.	T	.	.	PASS	END=86374886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	86374887	.	T	.	.	PASS	END=86374956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	86378419	.	C	.	.	PASS	END=86378439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	86378440	.	G	.	.	PASS	END=86378460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr2	86378461	.	C	.	.	PASS	END=86378590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr2	86378591	.	A	.	.	PASS	END=86378605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	86378606	.	A	.	.	PASS	END=86378625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	86378626	.	C	.	.	PASS	END=86378636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	86378637	.	T	.	.	PASS	END=86378648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	86380640	.	C	.	.	PASS	END=86380667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	86380668	.	A	.	.	PASS	END=86380674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	86380675	.	A	.	.	PASS	END=86380739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:92:60
chr2	86385704	.	G	.	.	PASS	END=86385783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:322:99:60
chr2	86385784	.	C	.	.	PASS	END=86385844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:246:99:60
chr2	86386440	.	T	.	.	LowGQX	END=86386443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	86386444	.	G	.	.	LowGQX	END=86386451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr2	86386452	.	C	.	.	LowGQX	END=86386454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	86386455	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr2	86386456	.	C	.	.	LowGQX	END=86386461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	86386462	.	C	.	.	LowGQX	END=86386463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	86386464	.	T	.	.	LowGQX	END=86386472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	86386473	.	G	.	.	LowGQX	END=86386474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	86386475	.	T	.	.	LowGQX	END=86386477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	86386478	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	86386479	.	A	.	.	PASS	END=86386481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	86386482	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	86386483	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr2	86386484	.	A	.	.	LowGQX	END=86386491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	86386492	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr2	86386493	.	C	.	.	LowGQX	END=86386498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	86386499	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:36:60
chr2	86386500	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:21:60
chr2	86386501	.	C	.	.	PASS	END=86386531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	86386532	.	C	.	.	PASS	END=86386534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	86386535	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:18:60
chr2	86386536	.	G	.	.	PASS	END=86386583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	86386584	.	T	.	.	PASS	END=86386636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr2	86386637	.	C	.	.	PASS	END=86386642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	86386643	.	G	.	.	PASS	END=86386673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr2	86386674	.	A	.	.	PASS	END=86386708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	86386709	.	C	.	.	PASS	END=86386719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	86386720	.	A	.	.	PASS	END=86386775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	86386776	.	C	.	.	PASS	END=86386794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	86389041	.	G	.	.	PASS	END=86389042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:90:60
chr2	86389043	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:55:46:60
chr2	86389044	.	C	.	.	PASS	END=86389166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr2	86389167	.	T	.	.	PASS	END=86389176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr2	86389177	.	T	.	.	PASS	END=86389196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr2	86389197	.	T	.	.	PASS	END=86389257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	86393630	.	C	.	.	PASS	END=86393668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	86393669	.	G	.	.	PASS	END=86393757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	86393758	.	T	.	.	PASS	END=86393767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:96:60
chr2	86397870	.	A	.	.	PASS	END=86397901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	86397902	.	G	.	.	PASS	END=86397950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	86397951	.	A	.	.	PASS	END=86397969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr2	86398330	.	C	.	.	PASS	END=86398424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	86398425	.	G	.	.	PASS	END=86398438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	86398439	.	C	.	.	PASS	END=86398468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr2	86398469	.	C	.	.	PASS	END=86398484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr2	86398485	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:40:60
chr2	86398486	.	T	.	.	PASS	END=86398509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr2	86398510	.	T	.	.	PASS	END=86398544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr2	86400712	.	A	.	.	PASS	END=86400716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:59
chr2	86400717	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:36:59
chr2	86400718	.	A	.	.	PASS	END=86400720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:59
chr2	86400721	.	T	.	.	PASS	END=86400722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:59
chr2	86400723	.	G	.	.	PASS	END=86400727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:59
chr2	86400728	.	G	.	.	PASS	END=86400731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:36:60
chr2	86400732	.	T	.	.	PASS	END=86400734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	86400735	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:45:60
chr2	86400736	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:60:60
chr2	86400737	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:30:60
chr2	86400738	.	T	.	.	PASS	END=86400740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr2	86400741	.	A	.	.	PASS	END=86400742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr2	86400743	.	T	.	.	PASS	END=86400746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	86400747	.	A	.	.	PASS	END=86400748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr2	86400749	.	A	.	.	PASS	END=86400751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	86400752	.	G	.	.	PASS	END=86400754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr2	86400755	.	G	.	.	PASS	END=86400757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr2	86400758	.	T	.	.	PASS	END=86400759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:33:60
chr2	86400760	.	A	.	.	PASS	END=86400766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr2	86400767	.	A	.	.	PASS	END=86400772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	86400773	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:20:60
chr2	86400774	.	T	.	.	PASS	END=86400795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr2	86400796	.	C	.	.	PASS	END=86400803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr2	86400804	.	T	.	.	PASS	END=86400823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:60
chr2	86400824	.	G	A	446.70	PASS	BaseQRankSum=1.238;DP=35;Dels=0.00;FS=1.412;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.413;QD=12.76;ReadPosRankSum=-0.050;SB=-257.17	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:17,18:35:99:477,0,409:60:99:0.514
chr2	86400825	.	C	.	.	PASS	END=86400839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:75:60
chr2	86400840	.	C	.	.	PASS	END=86400861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr2	86400862	.	A	.	.	PASS	END=86400885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr2	86406555	.	C	.	.	PASS	END=86406674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	86406675	.	A	.	.	PASS	END=86406745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	86408409	.	A	.	.	PASS	END=86408433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	86408434	.	G	.	.	PASS	END=86408508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	86422433	.	A	.	.	PASS	END=86422503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	86422504	.	A	.	.	PASS	END=86422532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	86426586	.	A	.	.	LowGQX	END=86426685	GT	./.
chr2	86433227	.	A	.	.	LowGQX	END=86433420	GT	./.
chr2	86434264	.	T	.	.	LowGQX	END=86434452	GT	./.
chr2	86437601	.	A	.	.	LowGQX	END=86437793	GT	./.
chr2	86439500	.	T	.	.	LowGQX	END=86439599	GT	./.
chr2	86440712	.	T	.	.	LowGQX	END=86440720	GT	./.
chr2	86440721	.	C	.	.	LowGQX	END=86440811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86444161	.	C	.	.	PASS	END=86444268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	86444269	.	G	.	.	PASS	END=86444284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	86459697	.	T	.	.	PASS	END=86459740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	86459741	.	C	.	.	PASS	END=86459773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr2	86459774	.	C	.	.	PASS	END=86459901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr2	86459902	.	T	.	.	PASS	END=86459919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr2	86459920	.	C	.	.	PASS	END=86459933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	86459934	.	A	.	.	PASS	END=86459951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	86459952	.	G	.	.	PASS	END=86459962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	86459963	.	T	.	.	PASS	END=86459975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	86459976	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:99:60
chr2	86479029	.	C	.	.	PASS	END=86479034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr2	86479035	.	A	G	622.97	PASS	BaseQRankSum=-0.895;DP=51;Dels=0.00;FS=10.030;HRun=1;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-0.669;QD=12.22;ReadPosRankSum=-0.141;SB=-153.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:26,25:51:99:653,0,834:60:99:0.490
chr2	86479036	.	G	.	.	PASS	END=86479071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	86479072	.	C	.	.	PASS	END=86479078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	86479079	.	C	.	.	PASS	END=86479115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	86479116	.	G	.	.	PASS	END=86479229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	86479230	.	G	.	.	PASS	END=86479244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	86481766	.	C	.	.	PASS	END=86481768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr2	86481769	.	A	.	.	PASS	END=86481783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr2	86481784	.	A	.	.	PASS	END=86481785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:39:60
chr2	86481786	.	A	.	.	PASS	END=86481787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr2	86481788	.	A	.	.	PASS	END=86481789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr2	86481790	.	A	.	.	PASS	END=86481798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr2	86481799	.	C	.	.	PASS	END=86481807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr2	86481808	.	A	.	.	PASS	END=86481823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	86481824	.	T	.	.	PASS	END=86481834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr2	86481835	.	C	T	392.14	PASS	BaseQRankSum=-0.206;DP=47;Dels=0.00;FS=1.309;HRun=0;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-0.705;QD=8.34;ReadPosRankSum=-2.027;SB=-140.50	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,19:47:99:422,0,602:60:99:0.404
chr2	86481836	.	G	.	.	PASS	END=86481862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:96:60
chr2	86481863	.	A	.	.	PASS	END=86481984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:93:60
chr2	86481985	.	C	.	.	PASS	END=86481988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:81:60
chr2	86491037	.	G	.	.	PASS	END=86491038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:96:60
chr2	86491039	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:55:60
chr2	86491040	.	A	.	.	PASS	END=86491074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:93:60
chr2	86491075	.	C	.	.	PASS	END=86491120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	86491121	.	G	.	.	PASS	END=86491164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	86491165	.	C	.	.	PASS	END=86491215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	86507055	.	A	.	.	LowGQX	END=86507060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507061	.	T	.	.	LowGQX	.	GT	./.
chr2	86507062	.	A	.	.	LowGQX	END=86507063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507064	.	T	.	.	LowGQX	.	GT	./.
chr2	86507065	.	A	.	.	LowGQX	END=86507074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507075	.	A	.	.	LowGQX	.	GT	./.
chr2	86507076	.	C	.	.	LowGQX	END=86507079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507080	.	A	.	.	LowGQX	END=86507084	GT	./.
chr2	86507085	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507086	.	C	.	.	LowGQX	END=86507087	GT	./.
chr2	86507088	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507089	.	G	.	.	LowGQX	.	GT	./.
chr2	86507090	.	G	.	.	LowGQX	END=86507094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507095	.	A	.	.	LowGQX	.	GT	./.
chr2	86507096	.	T	.	.	LowGQX	END=86507097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507098	.	G	.	.	LowGQX	.	GT	./.
chr2	86507099	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507100	.	G	.	.	LowGQX	.	GT	./.
chr2	86507101	.	A	.	.	LowGQX	END=86507103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507104	.	A	.	.	LowGQX	.	GT	./.
chr2	86507105	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507106	.	C	.	.	LowGQX	END=86507107	GT	./.
chr2	86507108	.	C	.	.	LowGQX	END=86507109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507110	.	T	.	.	LowGQX	END=86507111	GT	./.
chr2	86507112	.	T	.	.	LowGQX	END=86507113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507114	.	T	.	.	LowGQX	.	GT	./.
chr2	86507115	.	G	.	.	LowGQX	END=86507117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507118	.	A	.	.	LowGQX	.	GT	./.
chr2	86507119	.	G	.	.	LowGQX	END=86507121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507122	.	G	.	.	LowGQX	.	GT	./.
chr2	86507123	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507124	.	A	.	.	LowGQX	.	GT	./.
chr2	86507125	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507126	.	C	.	.	LowGQX	.	GT	./.
chr2	86507127	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507128	.	G	.	.	LowGQX	.	GT	./.
chr2	86507129	.	A	.	.	LowGQX	END=86507134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507135	.	A	.	.	LowGQX	.	GT	./.
chr2	86507136	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507137	.	G	.	.	LowGQX	.	GT	./.
chr2	86507138	.	A	.	.	LowGQX	END=86507142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507143	.	C	.	.	LowGQX	END=86507144	GT	./.
chr2	86507145	.	T	.	.	LowGQX	END=86507151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507152	.	G	.	.	LowGQX	END=86507153	GT	./.
chr2	86507154	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507155	.	G	.	.	LowGQX	END=86507157	GT	./.
chr2	86507158	.	T	.	.	LowGQX	END=86507159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507160	.	T	.	.	LowGQX	.	GT	./.
chr2	86507161	.	T	.	.	LowGQX	END=86507165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507166	.	C	.	.	LowGQX	.	GT	./.
chr2	86507167	.	G	.	.	LowGQX	END=86507168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507169	.	C	.	.	LowGQX	END=86507170	GT	./.
chr2	86507171	.	G	.	.	LowGQX	END=86507172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507173	.	G	.	.	LowGQX	END=86507175	GT	./.
chr2	86507176	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507177	.	A	.	.	LowGQX	.	GT	./.
chr2	86507178	.	A	.	.	LowGQX	END=86507180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86507181	.	G	.	.	LowGQX	END=86507214	GT	./.
chr2	86509242	.	C	.	.	PASS	END=86509266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	86509267	.	G	A	643.82	PASS	BaseQRankSum=2.373;DP=77;Dels=0.00;FS=0.928;HRun=0;HaplotypeScore=4.7346;MQ=60;MQ0=0;MQRankSum=0.358;QD=8.36;ReadPosRankSum=0.784;SB=-405.78	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:46,31:77:99:674,0,1046:60:99:0.403
chr2	86509268	.	C	.	.	PASS	END=86509326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	86509327	.	T	.	.	PASS	END=86509351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	86509352	.	T	.	.	PASS	END=86509378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:96:60
chr2	86509379	.	A	.	.	PASS	END=86509381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr2	86509382	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:43:60
chr2	86509383	.	A	.	.	PASS	END=86509387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:81:60
chr2	86509388	.	T	G	405.52	PASS	BaseQRankSum=0.429;DP=48;Dels=0.00;FS=4.581;HRun=0;HaplotypeScore=1.9993;MQ=60;MQ0=0;MQRankSum=-0.387;QD=8.45;ReadPosRankSum=1.872;SB=-272.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,20:48:99:436,0,627:60:99:0.417
chr2	86509389	.	A	.	.	PASS	END=86509416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr2	86564488	.	G	.	.	PASS	END=86564540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:58
chr2	86564541	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:27:58
chr2	86564542	.	G	.	.	PASS	END=86564544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:58
chr2	86564545	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:2:58
chr2	86564546	.	G	.	.	PASS	END=86564550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:58
chr2	86564551	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:58
chr2	86564552	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:58
chr2	86564553	.	G	.	.	LowGQX	END=86564555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:58
chr2	86564556	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:58
chr2	86564557	.	C	.	.	LowGQX	END=86564559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:58
chr2	86564560	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:58
chr2	86564561	.	G	.	.	LowGQX	END=86564570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:58
chr2	86564571	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:58
chr2	86564572	.	C	.	.	LowGQX	END=86564579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:58
chr2	86564580	.	C	.	.	LowGQX	END=86564586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:60
chr2	86564587	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:1:60
chr2	86564588	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:18:60
chr2	86564589	.	G	.	.	LowGQX	END=86564590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:21:60
chr2	86564591	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:15:60
chr2	86564592	.	G	.	.	LowGQX	END=86564595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:21:60
chr2	86564596	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:18:60
chr2	86564597	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:24:60
chr2	86564598	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:18:60
chr2	86564599	.	T	.	.	LowGQX	END=86564601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:21:60
chr2	86564602	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr2	86564603	.	C	.	.	LowGQX	END=86564604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:24:60
chr2	86564605	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr2	86564606	.	C	.	.	LowGQX	END=86564617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr2	86564618	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr2	86564619	.	G	.	45.04	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:15.05:60:15
chr2	86564620	.	A	.	.	LowGQX	END=86564621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:60
chr2	86564622	.	C	.	.	LowGQX	END=86564630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr2	86564631	.	C	.	.	LowGQX	END=86564640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	86564641	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr2	86564642	.	G	.	.	LowGQX	END=86564668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	86564669	.	G	.	.	LowGQX	END=86564681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	86564682	.	T	.	.	LowGQX	END=86564705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86565123	.	G	.	.	PASS	END=86565156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	86565157	.	A	.	.	PASS	END=86565222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	86669149	.	T	.	.	LowGQX	END=86669358	GT	./.
chr2	86676928	.	A	.	.	LowGQX	END=86676932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86676933	.	T	.	.	LowGQX	END=86677087	GT	./.
chr2	86678224	.	A	.	.	LowGQX	END=86678338	GT	./.
chr2	86682206	.	A	.	.	LowGQX	END=86682365	GT	./.
chr2	86683563	.	A	.	.	LowGQX	END=86683742	GT	./.
chr2	86683915	.	A	.	.	LowGQX	END=86683972	GT	./.
chr2	86683973	.	G	.	.	LowGQX	END=86684014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86684101	.	T	.	.	LowGQX	END=86684123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86684124	.	G	.	.	LowGQX	END=86684200	GT	./.
chr2	86691174	.	A	.	.	LowGQX	END=86691341	GT	./.
chr2	86693493	.	A	.	.	LowGQX	END=86693522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86693523	.	A	.	.	LowGQX	.	GT	./.
chr2	86693524	.	T	.	.	LowGQX	END=86693535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86693536	.	T	.	.	LowGQX	.	GT	./.
chr2	86693537	.	A	.	.	LowGQX	END=86693540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86693541	.	A	.	.	LowGQX	.	GT	./.
chr2	86693542	.	C	.	.	LowGQX	END=86693561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86693562	.	A	.	.	LowGQX	.	GT	./.
chr2	86693563	.	C	.	.	LowGQX	END=86693565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86693566	.	A	.	.	LowGQX	END=86693567	GT	./.
chr2	86693568	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86693569	.	C	.	.	LowGQX	.	GT	./.
chr2	86693570	.	A	.	.	LowGQX	END=86693575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86693576	.	C	.	.	LowGQX	.	GT	./.
chr2	86693577	.	T	.	.	LowGQX	END=86693584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86693585	.	A	.	.	LowGQX	END=86693586	GT	./.
chr2	86693587	.	G	.	.	LowGQX	END=86693712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86693713	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr2	86693714	.	A	.	.	LowGQX	END=86693734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	86693735	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	86693736	.	T	.	.	LowGQX	END=86693762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86693763	.	G	.	.	LowGQX	.	GT	./.
chr2	86693764	.	C	.	.	LowGQX	END=86693822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86693823	.	C	.	.	LowGQX	.	GT	./.
chr2	86693824	.	C	.	.	LowGQX	END=86693856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86693857	.	C	.	.	LowGQX	.	GT	./.
chr2	86693858	.	A	.	.	LowGQX	END=86693863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86693864	.	C	.	.	LowGQX	.	GT	./.
chr2	86693865	.	A	.	.	LowGQX	END=86693871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86693872	.	A	.	.	LowGQX	.	GT	./.
chr2	86693873	.	T	.	.	LowGQX	END=86693874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86693875	.	G	.	.	LowGQX	.	GT	./.
chr2	86693876	.	C	.	.	LowGQX	END=86693885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86693886	.	T	.	.	LowGQX	END=86694008	GT	./.
chr2	86697325	.	A	.	.	LowGQX	END=86697533	GT	./.
chr2	86701897	.	A	.	.	LowGQX	END=86702115	GT	./.
chr2	86704998	.	A	.	.	LowGQX	END=86705193	GT	./.
chr2	86705291	.	A	.	.	LowGQX	END=86705390	GT	./.
chr2	86705729	.	A	.	.	LowGQX	END=86705860	GT	./.
chr2	86707278	.	T	.	.	LowGQX	END=86707487	GT	./.
chr2	86709051	.	A	.	.	LowGQX	END=86709250	GT	./.
chr2	86709579	.	A	.	.	LowGQX	END=86709716	GT	./.
chr2	86709717	.	C	.	.	LowGQX	END=86709718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86709719	.	C	.	.	LowGQX	END=86709721	GT	./.
chr2	86709722	.	C	.	.	LowGQX	END=86709725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86709726	.	A	.	.	LowGQX	.	GT	./.
chr2	86709727	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86709728	.	T	.	.	LowGQX	.	GT	./.
chr2	86709729	.	G	.	.	LowGQX	END=86709737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86709738	.	A	.	.	LowGQX	.	GT	./.
chr2	86709739	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86709740	.	A	.	.	LowGQX	END=86709741	GT	./.
chr2	86709742	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86709743	.	C	.	.	LowGQX	.	GT	./.
chr2	86709744	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86709745	.	C	.	.	LowGQX	END=86709748	GT	./.
chr2	86709749	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86709750	.	T	.	.	LowGQX	END=86709751	GT	./.
chr2	86709752	.	T	.	.	LowGQX	END=86709754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86709755	.	T	.	.	LowGQX	.	GT	./.
chr2	86709756	.	T	.	.	LowGQX	END=86709757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86709758	.	C	.	.	LowGQX	END=86709759	GT	./.
chr2	86709760	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86709761	.	G	.	.	LowGQX	.	GT	./.
chr2	86709762	.	A	.	.	LowGQX	END=86709763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86709764	.	C	.	.	LowGQX	END=86709765	GT	./.
chr2	86709766	.	C	.	.	LowGQX	END=86709767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86709768	.	A	.	.	LowGQX	END=86709769	GT	./.
chr2	86709770	.	A	.	.	LowGQX	END=86709775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86709776	.	A	.	.	LowGQX	.	GT	./.
chr2	86709777	.	G	.	.	LowGQX	END=86709780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86709781	.	C	.	.	LowGQX	.	GT	./.
chr2	86709782	.	T	.	.	LowGQX	END=86709784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86709785	.	A	.	.	LowGQX	.	GT	./.
chr2	86709786	.	A	.	.	LowGQX	END=86709803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86709804	.	G	.	.	LowGQX	.	GT	./.
chr2	86709805	.	G	.	.	LowGQX	END=86709808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86709809	.	C	.	.	LowGQX	.	GT	./.
chr2	86709810	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86709811	.	A	.	.	LowGQX	.	GT	./.
chr2	86709812	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86709813	.	G	.	.	LowGQX	END=86709814	GT	./.
chr2	86709815	.	C	.	.	LowGQX	END=86709819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	86711108	.	A	.	.	LowGQX	END=86711283	GT	./.
chr2	86712059	.	T	.	.	LowGQX	END=86712158	GT	./.
chr2	86712850	.	A	.	.	LowGQX	END=86712898	GT	./.
chr2	86712899	.	G	.	.	LowGQX	END=86712901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86712902	.	A	.	.	LowGQX	.	GT	./.
chr2	86712903	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86712904	.	G	.	.	LowGQX	END=86712905	GT	./.
chr2	86712906	.	C	.	.	LowGQX	END=86712908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86712909	.	A	.	.	LowGQX	.	GT	./.
chr2	86712910	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86712911	.	T	.	.	LowGQX	.	GT	./.
chr2	86712912	.	G	.	.	LowGQX	END=86712914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86712915	.	T	.	.	LowGQX	.	GT	./.
chr2	86712916	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86712917	.	T	.	.	LowGQX	END=86712918	GT	./.
chr2	86712919	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	86712920	.	C	.	.	LowGQX	END=86712925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86712926	.	G	.	.	LowGQX	END=86712927	GT	./.
chr2	86712928	.	C	.	.	LowGQX	END=86712930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86712931	.	C	.	.	LowGQX	.	GT	./.
chr2	86712932	.	C	.	.	LowGQX	END=86712935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86712936	.	C	.	.	LowGQX	.	GT	./.
chr2	86712937	.	T	.	.	LowGQX	END=86712939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86712940	.	T	.	.	LowGQX	.	GT	./.
chr2	86712941	.	T	.	.	LowGQX	END=86712943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86712944	.	T	.	.	LowGQX	.	GT	./.
chr2	86712945	.	T	.	.	LowGQX	END=86712946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86712947	.	G	.	.	LowGQX	.	GT	./.
chr2	86712948	.	G	.	.	LowGQX	END=86712949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86712950	.	C	.	.	LowGQX	.	GT	./.
chr2	86712951	.	A	.	.	LowGQX	END=86712956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86712957	.	G	.	.	LowGQX	.	GT	./.
chr2	86712958	.	G	.	.	LowGQX	END=86712961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86712962	.	C	.	.	LowGQX	.	GT	./.
chr2	86712963	.	C	.	.	LowGQX	END=86712975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86712976	.	G	.	.	LowGQX	.	GT	./.
chr2	86712977	.	C	.	.	LowGQX	END=86712984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86716439	.	A	.	.	LowGQX	END=86716562	GT	./.
chr2	86716641	.	A	.	.	LowGQX	END=86716784	GT	./.
chr2	86718002	.	A	.	.	LowGQX	END=86718124	GT	./.
chr2	86718125	.	C	.	.	LowGQX	END=86718133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718134	.	A	.	.	LowGQX	.	GT	./.
chr2	86718135	.	G	.	.	LowGQX	END=86718143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718144	.	G	.	.	LowGQX	.	GT	./.
chr2	86718145	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718146	.	A	.	.	LowGQX	.	GT	./.
chr2	86718147	.	T	.	.	LowGQX	END=86718180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718181	.	G	.	.	LowGQX	.	GT	./.
chr2	86718182	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718262	.	A	.	.	LowGQX	END=86718271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718272	.	C	.	.	LowGQX	.	GT	./.
chr2	86718273	.	T	.	.	LowGQX	END=86718274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718275	.	A	.	.	LowGQX	END=86718300	GT	./.
chr2	86718301	.	A	.	.	LowGQX	END=86718309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718310	.	C	.	.	LowGQX	.	GT	./.
chr2	86718311	.	T	.	.	LowGQX	END=86718312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718313	.	C	.	.	LowGQX	.	GT	./.
chr2	86718314	.	A	.	.	LowGQX	END=86718327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718328	.	A	.	.	LowGQX	.	GT	./.
chr2	86718329	.	C	.	.	LowGQX	END=86718341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718342	.	A	.	.	LowGQX	END=86718343	GT	./.
chr2	86718344	.	T	.	.	LowGQX	END=86718349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718350	.	A	.	.	LowGQX	.	GT	./.
chr2	86718351	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718352	.	T	.	.	LowGQX	END=86718353	GT	./.
chr2	86718354	.	C	.	.	LowGQX	END=86718359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718360	.	C	.	.	LowGQX	.	GT	./.
chr2	86718361	.	T	.	.	LowGQX	END=86718362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718363	.	T	.	.	LowGQX	.	GT	./.
chr2	86718364	.	C	.	.	LowGQX	END=86718374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718375	.	A	.	.	LowGQX	.	GT	./.
chr2	86718376	.	C	.	.	LowGQX	END=86718379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718380	.	T	.	.	LowGQX	.	GT	./.
chr2	86718381	.	C	.	.	LowGQX	END=86718386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718387	.	G	.	.	LowGQX	.	GT	./.
chr2	86718388	.	A	.	.	LowGQX	END=86718391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718392	.	A	.	.	LowGQX	END=86718393	GT	./.
chr2	86718394	.	T	.	.	LowGQX	END=86718397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718398	.	G	.	.	LowGQX	.	GT	./.
chr2	86718399	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86718400	.	T	.	.	LowGQX	.	GT	./.
chr2	86719160	.	A	.	.	LowGQX	END=86719264	GT	./.
chr2	86732925	.	C	.	.	LowGQX	END=86733074	GT	./.
chr2	86734600	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86734601	.	C	.	.	LowGQX	.	GT	./.
chr2	86734602	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86734603	.	T	.	.	LowGQX	.	GT	./.
chr2	86734604	.	G	.	.	LowGQX	END=86734605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86734606	.	T	.	.	LowGQX	END=86734608	GT	./.
chr2	86734609	.	A	.	.	LowGQX	END=86734613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86734614	.	C	.	.	LowGQX	.	GT	./.
chr2	86734615	.	A	.	.	LowGQX	END=86734617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86734618	.	G	.	.	LowGQX	.	GT	./.
chr2	86734619	.	A	.	.	LowGQX	END=86734626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86734627	.	G	.	.	LowGQX	.	GT	./.
chr2	86734628	.	T	.	.	LowGQX	END=86734632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86734633	.	T	.	.	LowGQX	.	GT	./.
chr2	86734634	.	T	.	.	LowGQX	END=86734635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86734636	.	C	.	.	LowGQX	.	GT	./.
chr2	86734637	.	A	.	.	LowGQX	END=86734642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86734643	.	G	.	.	LowGQX	END=86734644	GT	./.
chr2	86734645	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86734646	.	T	.	.	LowGQX	END=86734651	GT	./.
chr2	86734652	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86734653	.	C	.	.	LowGQX	END=86734654	GT	./.
chr2	86734655	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86734656	.	T	.	.	LowGQX	.	GT	./.
chr2	86734657	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86734658	.	T	.	.	LowGQX	END=86734660	GT	./.
chr2	86734661	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86734662	.	C	.	.	LowGQX	END=86734666	GT	./.
chr2	86734667	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86734668	.	C	.	.	LowGQX	END=86734669	GT	./.
chr2	86734670	.	T	.	.	LowGQX	END=86734671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86734672	.	C	.	.	LowGQX	.	GT	./.
chr2	86734673	.	A	.	.	LowGQX	END=86734677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86734678	.	T	.	.	LowGQX	.	GT	./.
chr2	86734679	.	T	.	.	LowGQX	END=86734681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86734682	.	A	.	.	LowGQX	END=86734718	GT	./.
chr2	86737479	.	A	.	.	LowGQX	END=86737604	GT	./.
chr2	86756339	.	A	.	.	LowGQX	END=86756522	GT	./.
chr2	86769303	.	A	.	.	LowGQX	END=86769455	GT	./.
chr2	86790400	.	C	.	.	LowGQX	END=86790499	GT	./.
chr2	86830964	.	G	.	.	LowGQX	END=86831653	GT	./.
chr2	86831654	.	C	.	.	LowGQX	END=86831804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86831805	.	T	.	.	LowGQX	END=86832543	GT	./.
chr2	86839280	.	A	.	.	LowGQX	END=86839396	GT	./.
chr2	86839397	.	C	.	.	LowGQX	END=86839399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86845085	.	C	.	.	LowGQX	END=86845184	GT	./.
chr2	86847451	.	A	.	.	LowGQX	END=86847531	GT	./.
chr2	86847532	.	A	.	.	LowGQX	END=86847534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86847535	.	G	.	.	LowGQX	.	GT	./.
chr2	86847536	.	A	.	.	LowGQX	END=86847537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86847538	.	T	.	.	LowGQX	.	GT	./.
chr2	86847539	.	C	.	.	LowGQX	END=86847540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86847541	.	G	.	.	LowGQX	.	GT	./.
chr2	86847542	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86847543	.	T	.	.	LowGQX	.	GT	./.
chr2	86847544	.	G	.	.	LowGQX	END=86847545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86847546	.	T	.	.	LowGQX	END=86847547	GT	./.
chr2	86847548	.	C	.	.	LowGQX	END=86847552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86847553	.	T	.	.	LowGQX	.	GT	./.
chr2	86847554	.	C	.	.	LowGQX	END=86847558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86847559	.	A	.	.	LowGQX	.	GT	./.
chr2	86847560	.	G	.	.	LowGQX	END=86847561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86847562	.	G	.	.	LowGQX	.	GT	./.
chr2	86847563	.	C	.	.	LowGQX	END=86847571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86847572	.	G	.	.	LowGQX	.	GT	./.
chr2	86847573	.	C	.	.	LowGQX	END=86847594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86849782	.	G	.	.	LowGQX	END=86850011	GT	./.
chr2	86850852	.	C	.	.	LowGQX	END=86851011	GT	./.
chr2	86947789	.	G	.	.	LowGQX	END=86947934	GT	./.
chr2	86968048	.	A	.	.	LowGQX	END=86968050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968051	.	C	.	.	LowGQX	.	GT	./.
chr2	86968052	.	C	.	.	LowGQX	END=86968070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968071	.	G	.	.	LowGQX	END=86968072	GT	./.
chr2	86968073	.	A	.	.	LowGQX	END=86968074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968075	.	A	.	.	LowGQX	END=86968077	GT	./.
chr2	86968078	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968079	.	T	.	.	LowGQX	.	GT	./.
chr2	86968080	.	C	.	.	LowGQX	END=86968089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968090	.	G	.	.	LowGQX	END=86968091	GT	./.
chr2	86968092	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968093	.	A	.	5.68	LowGQX	DP=1;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:27:0
chr2	86968094	.	C	.	.	LowGQX	END=86968095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968096	.	G	.	.	LowGQX	.	GT	./.
chr2	86968097	.	T	.	.	LowGQX	END=86968098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968099	.	C	.	.	LowGQX	.	GT	./.
chr2	86968100	.	T	.	.	LowGQX	END=86968103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968104	.	A	.	.	LowGQX	END=86968105	GT	./.
chr2	86968106	.	A	.	.	LowGQX	END=86968114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968115	.	G	.	.	LowGQX	.	GT	./.
chr2	86968116	.	A	.	.	LowGQX	END=86968131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:27
chr2	86968132	.	G	.	.	LowGQX	.	GT	./.
chr2	86968133	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:27
chr2	86968134	.	C	.	.	LowGQX	.	GT	./.
chr2	86968135	.	C	.	.	LowGQX	END=86968144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968145	.	A	.	.	LowGQX	.	GT	./.
chr2	86968146	.	A	.	.	LowGQX	END=86968149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968150	.	C	.	.	LowGQX	.	GT	./.
chr2	86968151	.	A	.	.	LowGQX	END=86968159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968160	.	A	.	.	LowGQX	.	GT	./.
chr2	86968161	.	G	.	.	LowGQX	END=86968168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968169	.	C	.	.	LowGQX	.	GT	./.
chr2	86968170	.	G	.	.	LowGQX	END=86968177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968178	.	A	.	.	LowGQX	.	GT	./.
chr2	86968179	.	A	.	.	LowGQX	END=86968181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968182	.	C	.	.	LowGQX	.	GT	./.
chr2	86968183	.	C	.	.	LowGQX	END=86968189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968190	.	A	.	.	LowGQX	.	GT	./.
chr2	86968191	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968192	.	G	.	.	LowGQX	.	GT	./.
chr2	86968193	.	G	.	.	LowGQX	END=86968196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968197	.	G	.	.	LowGQX	.	GT	./.
chr2	86968198	.	G	.	.	LowGQX	END=86968203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968204	.	A	.	.	LowGQX	.	GT	./.
chr2	86968205	.	A	.	.	LowGQX	END=86968211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86968212	.	G	.	.	LowGQX	END=86968213	GT	./.
chr2	86968214	.	T	.	.	LowGQX	END=86968226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	86979017	.	A	.	.	LowGQX	END=86979155	GT	./.
chr2	86980579	.	A	.	.	LowGQX	END=86980644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	86980645	.	A	.	.	LowGQX	END=86980683	GT	./.
chr2	86992148	.	A	.	.	LowGQX	END=86992318	GT	./.
chr2	86992980	.	A	.	.	LowGQX	END=86993149	GT	./.
chr2	86997144	.	A	.	.	LowGQX	END=86997303	GT	./.
chr2	86998679	.	A	.	.	LowGQX	END=86998837	GT	./.
chr2	87000453	.	T	.	.	LowGQX	END=87000552	GT	./.
chr2	87011727	.	A	.	.	PASS	END=87011728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr2	87011729	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:21:60
chr2	87011730	.	G	.	.	PASS	END=87011734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr2	87011735	.	C	.	.	PASS	END=87011742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:72:60
chr2	87011743	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:42:60
chr2	87011744	.	C	.	.	PASS	END=87011757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:93:60
chr2	87011758	.	C	.	.	PASS	END=87011782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	87011783	.	A	.	.	PASS	END=87011787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	87011788	.	T	.	.	PASS	END=87011795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	87011796	.	T	.	.	PASS	END=87011825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	87011826	.	T	.	.	PASS	END=87011860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	87011861	.	A	.	.	PASS	END=87011883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr2	87011884	.	A	.	.	PASS	END=87011928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr2	87011929	.	C	.	.	PASS	END=87012187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:319:99:60
chr2	87012188	.	A	.	.	PASS	END=87012580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:324:99:60
chr2	87012581	.	T	.	.	PASS	END=87012681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:297:99:60
chr2	87012682	.	G	.	.	PASS	END=87012832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:347:99:60
chr2	87012833	.	G	.	.	PASS	END=87012903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:337:99:60
chr2	87012904	.	T	.	.	PASS	END=87012959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:344:99:60
chr2	87012960	.	A	.	.	PASS	END=87012990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:267:99:60
chr2	87012991	.	C	.	.	PASS	END=87013038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr2	87013039	.	A	.	.	PASS	END=87013048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	87013049	.	G	.	.	PASS	END=87013065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	87013066	.	T	.	.	PASS	END=87013101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	87013102	.	A	.	.	PASS	END=87013127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	87013128	.	A	.	.	PASS	END=87013143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	87013144	.	A	.	.	PASS	END=87013145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	87015602	.	C	.	.	PASS	END=87015605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr2	87015606	.	C	.	.	PASS	END=87015607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	87015608	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:75:60
chr2	87015609	.	C	.	.	PASS	END=87015613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	87015614	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:53:72:60
chr2	87015615	.	T	.	.	PASS	END=87015624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	87015625	.	G	.	.	PASS	END=87015633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	87015633	.	T	TGA	994.11	PASS	BaseQRankSum=0.538;DP=68;FS=7.110;HRun=0;HaplotypeScore=108.9523;MQ=60;MQ0=0;MQRankSum=1.757;QD=14.62;ReadPosRankSum=-0.110;SB=-227.26	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:43,25:68:99:1033,0,1874:60:99:0.368
chr2	87015634	.	G	.	.	PASS	END=87015682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	87015683	.	C	.	.	PASS	END=87015731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	87015732	.	A	.	.	PASS	END=87015734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	87016395	.	A	.	.	PASS	END=87016441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	87016442	.	T	.	.	PASS	END=87016478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	87016479	.	G	.	.	PASS	END=87016524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	87016525	.	A	.	.	PASS	END=87016573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	87016574	.	G	.	.	PASS	END=87016600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	87016601	.	C	.	.	PASS	END=87016607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	87016712	.	G	.	.	PASS	END=87016713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr2	87016714	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:27:42:60
chr2	87016715	.	C	.	.	PASS	END=87016716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr2	87016717	.	C	.	.	PASS	END=87016724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr2	87016725	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:51:60
chr2	87016726	.	G	.	.	PASS	END=87016728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr2	87016729	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:51:60
chr2	87016730	.	G	.	.	PASS	END=87016748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	87016749	.	C	.	.	PASS	END=87016755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr2	87016756	.	G	.	.	PASS	END=87016789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:60
chr2	87016790	.	C	.	.	PASS	END=87016826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr2	87016827	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:66:60
chr2	87016828	.	G	.	.	PASS	END=87016850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:87:60
chr2	87016851	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:60:60
chr2	87016852	.	G	.	.	PASS	END=87016853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr2	87016854	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:75:60
chr2	87016855	.	G	.	.	PASS	END=87016888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:60
chr2	87016889	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:63:60
chr2	87016890	.	G	.	.	PASS	END=87016895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:78:60
chr2	87016896	.	T	.	.	PASS	END=87016898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:69:60
chr2	87016899	.	G	.	.	PASS	END=87016904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:87:60
chr2	87016905	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:66:60
chr2	87016906	.	G	.	.	PASS	END=87016908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr2	87016909	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:69:60
chr2	87016910	.	G	.	.	PASS	END=87016913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr2	87016914	.	T	.	.	PASS	END=87016915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:63:60
chr2	87016916	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:87:60
chr2	87016917	.	T	.	.	PASS	END=87016918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:66:60
chr2	87016919	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:90:60
chr2	87016920	.	A	.	.	PASS	END=87016924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:66:60
chr2	87017400	.	A	.	.	LowGQX	END=87017404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	87017405	.	A	.	.	LowGQX	END=87017406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:9:60
chr2	87017407	.	C	.	.	LowGQX	END=87017417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	87017418	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr2	87017419	.	C	.	.	LowGQX	END=87017434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	87017435	.	A	.	.	LowGQX	END=87017436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:15:60
chr2	87017437	.	C	.	.	LowGQX	END=87017447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	87017448	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr2	87017449	.	A	.	.	LowGQX	END=87017450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	87017451	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr2	87017452	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	87017453	.	G	.	.	PASS	END=87017461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	87017462	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr2	87017463	.	C	.	.	PASS	END=87017478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	87017479	.	G	.	.	PASS	END=87017486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	87017487	.	T	.	.	PASS	END=87017491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	87017492	.	G	.	.	PASS	END=87017496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr2	87017497	.	G	.	.	PASS	END=87017504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:96:60
chr2	87017505	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:63:60
chr2	87017506	.	C	.	.	PASS	END=87017533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr2	87017534	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:66:60
chr2	87017535	.	G	.	.	PASS	END=87017555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:90:60
chr2	87017556	.	G	.	.	PASS	END=87017646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	87017647	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:99:60
chr2	87017648	.	A	.	.	PASS	END=87017666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr2	87017667	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:75:60
chr2	87017668	.	G	.	.	PASS	END=87017676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	87017677	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:69:60
chr2	87017678	.	T	.	.	PASS	END=87017685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr2	87017686	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:61:60
chr2	87017687	.	C	.	.	PASS	END=87017690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr2	87017691	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:75:60
chr2	87017692	.	G	.	.	PASS	END=87017702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr2	87017703	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:75:60
chr2	87017704	.	C	.	.	PASS	END=87017707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr2	87017708	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:57:60
chr2	87017709	.	T	.	.	PASS	END=87017715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:60
chr2	87017716	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:64:60
chr2	87017717	.	A	.	.	PASS	END=87017736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:60
chr2	87017737	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:51:60
chr2	87017738	.	A	.	.	PASS	END=87017752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr2	87017753	.	T	.	.	PASS	END=87017774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr2	87017775	.	A	.	.	PASS	END=87017778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr2	87017779	.	C	.	.	PASS	END=87017787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	87017788	.	G	.	.	PASS	END=87017789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr2	87017790	.	T	.	.	PASS	END=87017793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	87017794	.	C	.	.	PASS	END=87017823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	87017824	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:74:60
chr2	87017825	.	G	.	.	PASS	END=87017838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:59
chr2	87017839	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:75:59
chr2	87017840	.	C	.	.	PASS	END=87017851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:58
chr2	87017852	.	G	C	60.79	LowQD;SB	BaseQRankSum=-1.858;DP=37;Dels=0.00;FS=43.757;HRun=6;HaplotypeScore=6.6284;MQ=58;MQ0=0;MQRankSum=-1.009;QD=1.64;ReadPosRankSum=-4.266;SB=0.35	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,9:37:90.78:91,0,846:58:61:0.243
chr2	87017853	.	C	.	.	PASS	END=87017859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:81:58
chr2	87017860	.	C	.	.	PASS	END=87017863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:87:60
chr2	87017864	.	C	.	.	PASS	END=87017887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	87017888	.	T	.	.	PASS	END=87017935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	87017936	.	C	.	.	PASS	END=87018111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	87018112	.	G	.	.	PASS	END=87018173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	87018174	.	G	.	.	PASS	END=87018185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr2	87018186	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:75:60
chr2	87018187	.	A	.	.	PASS	END=87018218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr2	87018632	.	C	.	.	PASS	END=87018650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	87018651	.	C	.	.	PASS	END=87018690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:93:60
chr2	87018691	.	T	.	.	PASS	END=87018719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	87018720	.	T	.	.	PASS	END=87018782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	87018783	.	T	.	.	PASS	END=87018829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	87018830	.	T	.	.	PASS	END=87018837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	87042728	.	G	.	.	LowGQX	END=87042786	GT	./.
chr2	87042787	.	G	.	.	LowGQX	END=87042845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87048810	.	T	.	.	LowGQX	END=87048909	GT	./.
chr2	87049425	.	G	.	.	LowGQX	END=87049513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	87049514	.	A	.	.	LowGQX	END=87049524	GT	./.
chr2	87060024	.	C	.	.	LowGQX	END=87060183	GT	./.
chr2	87069387	.	C	.	.	LowGQX	END=87069486	GT	./.
chr2	87071711	.	T	.	.	LowGQX	END=87071810	GT	./.
chr2	87072012	.	G	.	.	LowGQX	END=87072111	GT	./.
chr2	87073802	.	C	.	.	LowGQX	END=87073953	GT	./.
chr2	87080048	.	A	.	.	LowGQX;LowMQ	END=87080146	GT	./.
chr2	87080147	.	G	.	.	LowGQX	END=87080163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:30
chr2	87080164	.	A	.	.	LowGQX	END=87080266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:52
chr2	87085178	.	A	.	.	LowGQX	END=87085285	GT	./.
chr2	87085286	.	G	.	.	LowGQX	END=87085297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085298	.	A	.	.	LowGQX	END=87085299	GT	./.
chr2	87085300	.	C	.	.	LowGQX	END=87085303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085304	.	A	.	.	LowGQX	.	GT	./.
chr2	87085305	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085306	.	A	.	.	LowGQX	.	GT	./.
chr2	87085307	.	C	.	.	LowGQX	END=87085312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085313	.	T	.	.	LowGQX	.	GT	./.
chr2	87085314	.	A	.	.	LowGQX	END=87085319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085320	.	T	.	.	LowGQX	.	GT	./.
chr2	87085321	.	C	.	.	LowGQX	END=87085322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085323	.	T	.	.	LowGQX	END=87085324	GT	./.
chr2	87085325	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085326	.	T	.	.	LowGQX	.	GT	./.
chr2	87085327	.	C	.	.	LowGQX	END=87085328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085329	.	A	.	.	LowGQX	END=87085330	GT	./.
chr2	87085331	.	C	.	.	LowGQX	END=87085333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085334	.	T	.	.	LowGQX	.	GT	./.
chr2	87085335	.	T	.	.	LowGQX	END=87085340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085341	.	T	.	.	LowGQX	.	GT	./.
chr2	87085342	.	G	.	.	LowGQX	END=87085344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085345	.	T	.	.	LowGQX	.	GT	./.
chr2	87085346	.	A	.	.	LowGQX	END=87085347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085348	.	T	.	.	LowGQX	END=87085349	GT	./.
chr2	87085350	.	C	.	.	LowGQX	END=87085351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085352	.	T	.	.	LowGQX	.	GT	./.
chr2	87085353	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085354	.	T	.	.	LowGQX	.	GT	./.
chr2	87085355	.	T	.	.	LowGQX	END=87085357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085358	.	G	.	.	LowGQX	.	GT	./.
chr2	87085359	.	G	.	.	LowGQX	END=87085367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085368	.	A	.	.	LowGQX	.	GT	./.
chr2	87085369	.	G	.	.	LowGQX	END=87085370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085371	.	G	.	.	LowGQX	END=87085372	GT	./.
chr2	87085373	.	C	.	.	LowGQX	END=87085384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085385	.	G	.	.	LowGQX	.	GT	./.
chr2	87085386	.	T	.	.	LowGQX	END=87085391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085392	.	T	.	.	LowGQX	.	GT	./.
chr2	87085393	.	C	.	.	LowGQX	END=87085395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085396	.	T	.	.	LowGQX	.	GT	./.
chr2	87085397	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085398	.	C	.	.	LowGQX	.	GT	./.
chr2	87085399	.	T	.	.	LowGQX	END=87085402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085403	.	T	.	.	LowGQX	.	GT	./.
chr2	87085404	.	G	.	.	LowGQX	END=87085409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085410	.	C	.	.	LowGQX	.	GT	./.
chr2	87085411	.	G	.	.	LowGQX	END=87085414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085415	.	T	.	.	LowGQX	.	GT	./.
chr2	87085416	.	C	.	.	LowGQX	END=87085419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085420	.	G	.	.	LowGQX	.	GT	./.
chr2	87085421	.	C	.	.	LowGQX	END=87085423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085424	.	G	.	.	LowGQX	.	GT	./.
chr2	87085425	.	T	.	.	LowGQX	END=87085427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085428	.	A	.	.	LowGQX	END=87085430	GT	./.
chr2	87085431	.	C	.	.	LowGQX	END=87085433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085434	.	A	.	.	LowGQX	END=87085435	GT	./.
chr2	87085436	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87085437	.	T	.	.	LowGQX	END=87085445	GT	./.
chr2	87085446	.	G	.	.	LowGQX	END=87085449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085450	.	T	.	.	LowGQX	.	GT	./.
chr2	87085451	.	T	.	.	LowGQX	END=87085453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085454	.	A	.	.	LowGQX	END=87085455	GT	./.
chr2	87085456	.	C	.	.	LowGQX	END=87085457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085458	.	T	.	.	LowGQX	.	GT	./.
chr2	87085459	.	C	.	.	LowGQX	END=87085464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085465	.	A	.	.	LowGQX	.	GT	./.
chr2	87085466	.	C	.	.	LowGQX	END=87085468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085469	.	C	.	.	LowGQX	END=87085470	GT	./.
chr2	87085471	.	T	.	.	LowGQX	END=87085473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085474	.	C	.	.	LowGQX	.	GT	./.
chr2	87085475	.	C	.	.	LowGQX	END=87085476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085477	.	T	.	.	LowGQX	.	GT	./.
chr2	87085478	.	C	.	.	LowGQX	END=87085479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085480	.	T	.	.	LowGQX	.	GT	./.
chr2	87085481	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085482	.	T	.	.	LowGQX	END=87085483	GT	./.
chr2	87085484	.	G	.	.	LowGQX	END=87085485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085486	.	T	.	.	LowGQX	END=87085488	GT	./.
chr2	87085489	.	G	.	.	LowGQX	END=87085499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085500	.	T	.	.	LowGQX	.	GT	./.
chr2	87085501	.	A	.	.	LowGQX	END=87085504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085505	.	A	.	.	LowGQX	.	GT	./.
chr2	87085506	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085507	.	G	.	.	LowGQX	.	GT	./.
chr2	87085508	.	G	.	.	LowGQX	END=87085509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085510	.	T	.	.	LowGQX	.	GT	./.
chr2	87085511	.	C	.	.	LowGQX	END=87085517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085518	.	A	.	.	LowGQX	.	GT	./.
chr2	87085519	.	G	.	.	LowGQX	END=87085520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085521	.	A	.	.	LowGQX	.	GT	./.
chr2	87085522	.	C	.	.	LowGQX	END=87085524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085525	.	A	.	.	LowGQX	.	GT	./.
chr2	87085526	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085527	.	T	.	.	LowGQX	END=87085528	GT	./.
chr2	87085529	.	G	.	.	LowGQX	END=87085532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085533	.	T	.	.	LowGQX	END=87085536	GT	./.
chr2	87085537	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87085538	.	A	.	.	LowGQX	END=87085539	GT	./.
chr2	87085540	.	C	.	.	LowGQX	END=87085541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	87088918	.	T	.	.	LowGQX	END=87088929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87088930	.	C	.	.	LowGQX	.	GT	./.
chr2	87088931	.	G	.	.	LowGQX	END=87089021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87089022	.	T	.	.	LowGQX	.	GT	./.
chr2	87089023	.	C	.	.	LowGQX	END=87089042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87089043	.	G	.	.	LowGQX	.	GT	./.
chr2	87089044	.	G	.	.	LowGQX	END=87089081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	87089082	.	G	.	.	LowGQX	END=87089083	GT	./.
chr2	87092408	.	T	.	.	LowGQX	.	GT	./.
chr2	87092409	.	C	.	5.68	LowGQX	DP=1;MQ=47;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:47:0
chr2	87092410	.	T	.	.	LowGQX	END=87092413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	87092414	.	A	.	.	LowGQX	.	GT	./.
chr2	87092415	.	A	.	.	LowGQX	END=87092418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	87092419	.	C	.	.	LowGQX	.	GT	./.
chr2	87092420	.	T	.	.	LowGQX	END=87092426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	87092427	.	G	.	.	LowGQX	END=87092428	GT	./.
chr2	87092429	.	A	.	.	LowGQX	END=87092431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	87092432	.	G	.	.	LowGQX	.	GT	./.
chr2	87092433	.	A	.	.	LowGQX	END=87092436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	87092437	.	G	.	.	LowGQX	.	GT	./.
chr2	87092438	.	G	.	.	LowGQX	END=87092443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	87092444	.	G	.	.	LowGQX	.	GT	./.
chr2	87092445	.	G	.	.	LowGQX	END=87092471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	87092472	.	G	.	.	LowGQX	.	GT	./.
chr2	87092473	.	C	.	.	LowGQX	END=87092477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	87092478	.	C	.	.	LowGQX	.	GT	./.
chr2	87092479	.	A	.	.	LowGQX	END=87092480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	87092481	.	G	.	.	LowGQX	END=87092567	GT	./.
chr2	87092761	.	A	.	.	LowGQX	END=87092860	GT	./.
chr2	87135006	.	A	.	.	LowGQX;LowMQ	END=87135087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:3:3
chr2	87135088	.	T	.	.	LowGQX;LowMQ	END=87135126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:3:4
chr2	87135127	.	A	.	.	LowGQX;LowMQ	END=87135162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:3:3
chr2	87135163	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87135164	.	T	.	.	LowGQX;LowMQ	END=87135165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:3:3
chr2	87140902	.	T	.	.	PASS	END=87140938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:87:30
chr2	87140939	.	T	.	.	PASS	END=87140995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:97:34
chr2	87140996	.	G	.	.	PASS	END=87141018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:42
chr2	87141019	.	A	.	.	PASS	END=87141022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:45
chr2	87141023	.	C	.	.	PASS	END=87141028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:45
chr2	87141029	.	C	.	.	PASS	END=87141032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:47
chr2	87141033	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:33:49
chr2	87141034	.	C	.	.	PASS	END=87141045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:49
chr2	87141046	.	T	.	.	PASS	END=87141053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:51:49
chr2	87141054	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:45:49
chr2	87141055	.	C	.	.	PASS	END=87141058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:49
chr2	87144668	.	A	.	.	LowGQX;LowMQ	END=87144669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:6:4
chr2	87144670	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:184:0:4
chr2	87144671	.	T	.	.	LowGQX;LowMQ	END=87144710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:3:3
chr2	87144711	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87144712	.	C	.	.	LowGQX;LowMQ	END=87144722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:3:3
chr2	87144723	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87144724	.	T	.	.	LowGQX;LowMQ	END=87144790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:3:3
chr2	87144791	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:141:3:4
chr2	87144792	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87144793	.	A	.	.	LowGQX;LowMQ	END=87144796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:3:4
chr2	87144797	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87144798	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:151:3:4
chr2	87144799	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87144800	.	A	.	.	LowGQX;LowMQ	END=87144805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:3:4
chr2	87144806	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87144807	.	T	.	.	LowGQX;LowMQ	END=87144815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:3:2
chr2	87144816	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87144817	.	T	.	.	LowGQX;LowMQ	END=87144819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:3:2
chr2	87144820	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87144821	.	T	.	.	LowGQX;LowMQ	END=87144822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:3:2
chr2	87144823	.	C	.	.	LowGQX;LowMQ	END=87144825	GT	./.
chr2	87144826	.	T	.	.	LowGQX;LowMQ	END=87144827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:3:2
chr2	87178341	.	G	.	.	PASS	END=87178352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:39:27
chr2	87178353	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:17:29
chr2	87178354	.	A	.	.	PASS	END=87178375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:29
chr2	87178376	.	A	.	.	PASS	END=87178428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:24
chr2	87178429	.	G	.	.	PASS	END=87178442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:42:22
chr2	87178443	.	A	.	.	PASS	END=87178456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:45:21
chr2	87178457	.	A	.	.	PASS	END=87178472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:30:20
chr2	87178473	.	C	.	.	LowMQ	END=87178497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:30:14
chr2	87178498	.	T	.	.	LowMQ	END=87178500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:30:13
chr2	87180013	.	T	.	.	LowGQX;LowMQ	END=87180176	GT	./.
chr2	87180589	.	T	.	.	LowGQX;LowMQ	END=87180773	GT	./.
chr2	87184757	.	T	.	.	LowGQX;LowMQ	END=87184774	GT	./.
chr2	87184775	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:40:3:4
chr2	87184776	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87184777	.	T	.	.	LowGQX;LowMQ	END=87184784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:3:6
chr2	87184785	.	C	.	.	LowGQX;LowMQ	END=87184799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:6:6
chr2	87184800	.	A	.	.	LowGQX;LowMQ	END=87184808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:6:6
chr2	87184809	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:56:3:6
chr2	87184810	.	C	.	.	LowGQX;LowMQ	END=87184813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:6:6
chr2	87184814	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:57:3:6
chr2	87184815	.	T	.	.	LowGQX;LowMQ	END=87184830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:6:6
chr2	87184831	.	A	.	.	LowGQX;LowMQ	END=87184837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:12:7
chr2	87184838	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:64:9:8
chr2	87184839	.	T	.	.	LowGQX;LowMQ	END=87184847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:12:7
chr2	87184848	.	A	.	.	LowGQX;LowMQ	END=87184849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:15:9
chr2	87184850	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:52:12:9
chr2	87184851	.	G	.	.	LowGQX;LowMQ	END=87184869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:21:10
chr2	87184870	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:65:18:10
chr2	87184871	.	C	.	.	LowGQX;LowMQ	END=87184888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:24:10
chr2	87184889	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:64:18:10
chr2	87184890	.	C	.	.	LowGQX;LowMQ	END=87184893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:27:10
chr2	87184894	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:65:30:11
chr2	87184895	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:65:27:11
chr2	87184896	.	T	.	.	LowMQ	END=87184901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:30:11
chr2	87184902	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:71:27:11
chr2	87184903	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:77:33:11
chr2	87184904	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:77:27:11
chr2	87184905	.	G	.	.	LowMQ	END=87184913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:33:11
chr2	87184914	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:82:27:11
chr2	87184915	.	C	.	.	LowMQ	END=87184932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:30:10
chr2	87184933	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:79:24:10
chr2	87184934	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:79:30:10
chr2	87184935	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:78:24:10
chr2	87184936	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:78:30:10
chr2	87184937	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:78:24:10
chr2	87184938	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:79:30:10
chr2	87184939	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:79:27:10
chr2	87184940	.	G	.	.	LowMQ	END=87184942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:30:10
chr2	87184943	.	T	.	.	LowGQX;LowMQ	END=87184947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:21:10
chr2	87184948	.	T	.	.	LowMQ	END=87184950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:30:10
chr2	87184951	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:69:27:10
chr2	87184952	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:69:30:10
chr2	87184953	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:69:27:10
chr2	87184954	.	A	.	.	LowMQ	END=87184957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:30:10
chr2	87184958	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:69:27:10
chr2	87184959	.	A	.	.	LowMQ	END=87184960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:30:10
chr2	87184961	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:71:27:10
chr2	87184962	.	G	.	.	LowMQ	END=87184963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:30:10
chr2	87184964	.	T	.	.	LowGQX;LowMQ	END=87184968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:27:10
chr2	87184969	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:70:30:10
chr2	87184970	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:70:27:10
chr2	87184971	.	A	.	.	LowMQ	END=87184974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:30:10
chr2	87184975	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:69:24:10
chr2	87184976	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:69:30:10
chr2	87184977	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:69:21:10
chr2	87184978	.	G	.	.	LowMQ	END=87184982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:30:10
chr2	87184983	.	G	.	.	LowGQX;LowMQ	END=87184998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:21:10
chr2	87184999	.	G	.	.	LowGQX;LowMQ	END=87185006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:15:8
chr2	87185007	.	T	.	.	LowGQX;LowMQ	END=87185017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:12:8
chr2	87185018	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:46:9:9
chr2	87185019	.	C	.	.	LowGQX;LowMQ	END=87185038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:12:9
chr2	87185039	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:45:9:9
chr2	87185040	.	G	.	.	LowGQX;LowMQ	END=87185048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:12:8
chr2	87185049	.	A	.	.	LowGQX;LowMQ	END=87185053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:9:7
chr2	87185054	.	C	.	.	LowGQX;LowMQ	END=87185061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:3:5
chr2	87185062	.	A	.	.	LowGQX;LowMQ	END=87185068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:3:5
chr2	87185069	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87185070	.	G	.	.	LowGQX;LowMQ	END=87185073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:3:5
chr2	87185074	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87185075	.	T	.	.	LowGQX;LowMQ	END=87185110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:3:5
chr2	87185111	.	A	.	.	LowGQX;LowMQ	END=87185126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:3:9
chr2	87185363	.	C	.	.	LowGQX;LowMQ	END=87185550	GT	./.
chr2	87190140	.	T	.	.	LowGQX;LowMQ	END=87190142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:3:6
chr2	87190143	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190144	.	T	.	.	LowGQX;LowMQ	END=87190147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:3:6
chr2	87190148	.	A	.	.	LowGQX;LowMQ	END=87190149	GT	./.
chr2	87190150	.	A	.	.	LowGQX;LowMQ	END=87190153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:3:6
chr2	87190154	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190155	.	T	.	.	LowGQX;LowMQ	END=87190156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:3:6
chr2	87190157	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190158	.	T	.	.	LowGQX;LowMQ	END=87190160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:3:6
chr2	87190161	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190162	.	G	.	.	LowGQX;LowMQ	END=87190164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:3:5
chr2	87190165	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190166	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:25:3:5
chr2	87190167	.	T	.	.	LowGQX;LowMQ	END=87190168	GT	./.
chr2	87190169	.	A	.	.	LowGQX;LowMQ	END=87190170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:3:5
chr2	87190171	.	T	.	.	LowGQX;LowMQ	END=87190172	GT	./.
chr2	87190173	.	T	.	.	LowGQX;LowMQ	END=87190174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:3:5
chr2	87190175	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190176	.	A	.	.	LowGQX;LowMQ	END=87190178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:3:5
chr2	87190179	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190180	.	T	.	.	LowGQX;LowMQ	END=87190181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:3:5
chr2	87190182	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190183	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:27:3:5
chr2	87190184	.	C	.	.	LowGQX;LowMQ	END=87190186	GT	./.
chr2	87190187	.	T	.	.	LowGQX;LowMQ	END=87190190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:3:5
chr2	87190191	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190192	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:32:3:5
chr2	87190193	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190194	.	A	.	.	LowGQX;LowMQ	END=87190195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:3:5
chr2	87190196	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190197	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:33:3:5
chr2	87190198	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190199	.	A	.	.	LowGQX;LowMQ	END=87190201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:3:5
chr2	87190202	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190203	.	A	.	.	LowGQX;LowMQ	END=87190205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:3:5
chr2	87190206	.	G	.	.	LowGQX;LowMQ	END=87190207	GT	./.
chr2	87190208	.	C	.	.	LowGQX;LowMQ	END=87190222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:3:5
chr2	87190223	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190224	.	A	.	.	LowGQX;LowMQ	END=87190225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:3:5
chr2	87190226	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190227	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:34:3:5
chr2	87190228	.	A	.	.	LowGQX;LowMQ	END=87190231	GT	./.
chr2	87190232	.	G	.	.	LowGQX;LowMQ	END=87190239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:3:5
chr2	87190240	.	T	.	.	LowGQX;LowMQ	END=87190241	GT	./.
chr2	87190242	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:32:3:5
chr2	87190243	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190244	.	T	.	.	LowGQX;LowMQ	END=87190250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:3:5
chr2	87190251	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190252	.	G	.	.	LowGQX;LowMQ	END=87190254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:3:5
chr2	87190255	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190256	.	C	.	.	LowGQX;LowMQ	END=87190267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:3:5
chr2	87190268	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190269	.	G	.	.	LowGQX;LowMQ	END=87190278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:0:5
chr2	87190279	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190280	.	A	.	.	LowGQX;LowMQ	END=87190286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:3:5
chr2	87190287	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87190288	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:29:3:5
chr2	87190289	.	A	.	.	LowGQX;LowMQ	END=87190347	GT	./.
chr2	87196345	.	T	.	.	LowGQX;LowMQ	END=87196444	GT	./.
chr2	87198798	.	C	.	.	LowGQX;LowMQ	END=87199147	GT	./.
chr2	87201164	.	A	.	.	PASS	END=87201210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:24
chr2	87201211	.	A	.	.	PASS	END=87201221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:21
chr2	87201222	.	C	.	.	PASS	END=87201239;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:20
chr2	87201240	.	C	.	.	LowMQ	END=87201266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:15
chr2	87201267	.	G	.	.	LowMQ	END=87201302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:78:11
chr2	87201303	.	T	.	.	LowMQ	END=87201332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:72:10
chr2	87201333	.	C	.	.	LowMQ	END=87201336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:96:11
chr2	87201337	.	A	.	.	LowMQ	END=87201370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:11
chr2	87201371	.	T	.	.	LowMQ	END=87201377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:12
chr2	87201449	.	T	.	.	LowMQ	END=87201486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:14
chr2	87201487	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:95:87:14
chr2	87201488	.	A	.	.	LowMQ	END=87201516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:42:14
chr2	87201517	.	T	.	.	LowMQ	END=87201531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:36:14
chr2	87201532	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:44:27:14
chr2	87201533	.	T	.	.	LowMQ	END=87201548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:30:14
chr2	87201549	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:40:5:14
chr2	87201550	.	G	.	.	LowMQ	END=87201556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:30:14
chr2	87201557	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:40:24:14
chr2	87201558	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:40:33:14
chr2	87201559	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:39:27:14
chr2	87201560	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:40:33:14
chr2	87201561	.	T	.	.	LowGQX;LowMQ	END=87201569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:21:13
chr2	87201570	.	G	.	.	LowGQX;LowMQ	END=87201580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:15:10
chr2	87201581	.	G	.	.	LowGQX;LowMQ	END=87201582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:9:10
chr2	87201583	.	G	.	.	LowGQX;LowMQ	END=87201584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:12:10
chr2	87201585	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:28:9:8
chr2	87201586	.	A	.	.	LowGQX;LowMQ	END=87201589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:3:7
chr2	87201590	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87201591	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:27:6:7
chr2	87201592	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87201593	.	T	.	.	LowGQX;LowMQ	END=87201598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:6:8
chr2	87201599	.	T	.	.	LowGQX;LowMQ	END=87201600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:3:8
chr2	87201601	.	G	.	.	LowGQX;LowMQ	END=87201603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:12:9
chr2	87201604	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:33:6:9
chr2	87201605	.	G	.	.	LowGQX;LowMQ	END=87201608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:9:9
chr2	87201609	.	T	.	.	LowGQX;LowMQ	END=87201612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:6:9
chr2	87201613	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:34:3:9
chr2	87201614	.	A	.	.	LowGQX;LowMQ	END=87201618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:6:9
chr2	87201619	.	G	.	.	LowGQX;LowMQ	END=87201629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:9:9
chr2	87201630	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:28:6:9
chr2	87201631	.	A	.	.	LowGQX;LowMQ	END=87201636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:9:9
chr2	87201762	.	T	.	.	LowGQX;LowMQ	END=87201927	GT	./.
chr2	87202819	.	T	.	.	LowGQX;LowMQ	END=87203009	GT	./.
chr2	87203244	.	C	.	.	LowGQX;LowMQ	END=87203413	GT	./.
chr2	87203644	.	C	.	.	LowGQX;LowMQ	END=87203822	GT	./.
chr2	87204631	.	T	.	.	LowGQX;LowMQ	END=87204667	GT	./.
chr2	87204668	.	A	.	.	LowGQX;LowMQ	END=87204673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:16
chr2	87204674	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87204675	.	G	.	.	LowGQX;LowMQ	END=87204703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:3:13
chr2	87204704	.	T	.	.	LowGQX;LowMQ	END=87204711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:3:11
chr2	87204712	.	C	.	.	LowGQX;LowMQ	END=87204721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:9:15
chr2	87204722	.	C	.	.	LowGQX;LowMQ	END=87204734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:9:13
chr2	87204735	.	G	.	.	LowGQX;LowMQ	END=87204757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:21:14
chr2	87204758	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:50:30:15
chr2	87204759	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:50:27:15
chr2	87204760	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:50:30:15
chr2	87204761	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:51:27:15
chr2	87204762	.	A	.	.	LowMQ	END=87204763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:30:15
chr2	87204764	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:58:27:15
chr2	87204765	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:66:39:16
chr2	87204766	.	T	.	.	LowMQ	END=87204780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:48:16
chr2	87204781	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:77:22:16
chr2	87204782	.	C	.	.	LowMQ	END=87204784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:45:16
chr2	87204785	.	T	.	.	LowMQ	END=87204814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:57:15
chr2	87204815	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:94:45:16
chr2	87204816	.	T	.	.	LowMQ	END=87204821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:51:15
chr2	87204822	.	A	.	.	LowMQ	END=87204824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:48:15
chr2	87204825	.	A	.	.	LowMQ	END=87204826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:51:15
chr2	87204827	.	A	.	.	LowMQ	END=87204830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:48:15
chr2	87204831	.	T	.	.	LowMQ	END=87204836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:57:15
chr2	87204837	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:95:39:15
chr2	87204838	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:95:66:15
chr2	87204839	.	C	.	.	LowMQ	END=87204840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:42:15
chr2	87204841	.	T	.	.	LowMQ	END=87204846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:63:16
chr2	87204847	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:95:48:16
chr2	87204848	.	C	.	.	LowMQ	END=87204857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:54:16
chr2	87204858	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:96:48:16
chr2	87204859	.	C	.	.	LowMQ	END=87204863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:60:15
chr2	87204864	.	A	.	.	LowMQ	END=87204865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:42:15
chr2	87204866	.	C	.	.	LowMQ	END=87204871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:57:16
chr2	87204872	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:86:48:16
chr2	87204873	.	A	.	.	LowMQ	END=87204882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:57:16
chr2	87204909	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:72:60:16
chr2	87204910	.	A	.	.	LowMQ	END=87204915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:42:16
chr2	87204916	.	A	.	.	LowMQ	END=87204917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:30:15
chr2	87204918	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:57:27:15
chr2	87204919	.	T	.	.	LowMQ	END=87204922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:30:15
chr2	87204923	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:52:27:15
chr2	87204924	.	T	.	.	LowMQ	END=87204926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:30:15
chr2	87204927	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:51:27:15
chr2	87204928	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:51:30:15
chr2	87204929	.	G	.	.	LowGQX;LowMQ	END=87204939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:21:14
chr2	87204940	.	G	.	.	LowGQX;LowMQ	END=87204942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:21:15
chr2	87204943	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:38:15:15
chr2	87204944	.	T	.	.	LowGQX;LowMQ	END=87204946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:21:15
chr2	87204947	.	T	.	.	LowGQX;LowMQ	END=87204951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:18:15
chr2	87204952	.	T	.	.	LowGQX;LowMQ	END=87204953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:15:15
chr2	87204954	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:34:21:15
chr2	87204955	.	T	.	.	LowGQX;LowMQ	END=87204960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:15:14
chr2	87204961	.	T	.	.	LowGQX;LowMQ	END=87204967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:18:14
chr2	87204968	.	T	.	.	LowGQX;LowMQ	END=87204970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:9:14
chr2	87204971	.	T	.	.	LowGQX;LowMQ	END=87204974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:18:14
chr2	87204975	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:42:3:15
chr2	87204976	.	T	.	.	LowGQX;LowMQ	END=87204978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:15:15
chr2	87204979	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:42:12:15
chr2	87204980	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:42:21:15
chr2	87204981	.	A	.	.	LowGQX;LowMQ	END=87204982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:15:14
chr2	87204983	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:41:9:15
chr2	87204984	.	C	.	.	LowGQX;LowMQ	END=87204985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:12:15
chr2	87204986	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:40:21:15
chr2	87204987	.	C	.	.	LowGQX;LowMQ	END=87204988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:15:15
chr2	87204989	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:41:24:15
chr2	87204990	.	C	.	.	LowGQX;LowMQ	END=87204992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:15:15
chr2	87204993	.	G	.	.	LowGQX;LowMQ	END=87204995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:18:14
chr2	87204996	.	G	.	.	LowGQX;LowMQ	END=87205007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:21:15
chr2	87205008	.	A	.	.	LowGQX;LowMQ	END=87205009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:18:15
chr2	87205010	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:47:30:15
chr2	87205011	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:47:27:15
chr2	87205012	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:47:30:15
chr2	87205013	.	T	.	.	LowGQX;LowMQ	END=87205015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:27:15
chr2	87205016	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:49:30:15
chr2	87205017	.	T	.	.	LowGQX;LowMQ	END=87205026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:21:13
chr2	87205027	.	G	.	.	LowGQX;LowMQ	END=87205029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:18:13
chr2	87205030	.	T	.	.	LowGQX;LowMQ	END=87205032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:21:13
chr2	87205033	.	C	.	.	LowGQX;LowMQ	END=87205037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:18:13
chr2	87205038	.	A	.	.	LowGQX;LowMQ	END=87205039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:15:13
chr2	87205040	.	G	.	.	LowGQX;LowMQ	END=87205041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:18:12
chr2	87205042	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:45:12:12
chr2	87205043	.	A	.	.	LowGQX;LowMQ	END=87205049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:15:12
chr2	87205050	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:43:12:12
chr2	87205051	.	T	.	.	LowGQX;LowMQ	END=87205062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:15:12
chr2	87208154	.	G	.	.	LowGQX;LowMQ	END=87208323	GT	./.
chr2	87211815	.	T	.	.	LowGQX	END=87211816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:18:22
chr2	87211817	.	G	.	.	LowGQX	END=87211826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:21:24
chr2	87211827	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:30:24
chr2	87211828	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:24:24
chr2	87211829	.	G	.	.	PASS	END=87211873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:30:28
chr2	87211874	.	T	C	10.25	LowGQX;LowQD;SB	BaseQRankSum=-0.900;DP=37;Dels=0.00;FS=7.404;HRun=0;HaplotypeScore=26.1753;MQ=31;MQ0=6;MQRankSum=-1.767;QD=0.28;ReadPosRankSum=1.367;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:24,6:37:39.81:40,0,247:31:10:0.200
chr2	87211875	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:21:35
chr2	87211876	.	G	.	48.04	LowGQX	DP=31;MQ=34;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:23:30:18.04:34:18
chr2	87211877	.	T	.	.	PASS	END=87211878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:30:32
chr2	87211879	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:36:27:32
chr2	87211880	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:37:15:31
chr2	87211881	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:30:32
chr2	87211882	.	A	.	.	LowGQX	END=87211883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:21:30
chr2	87211884	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:30:30
chr2	87211885	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:40:24:30
chr2	87211886	.	C	.	.	LowGQX	END=87211887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:18:30
chr2	87211888	.	G	.	.	PASS	END=87211889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:30:28
chr2	87211890	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:46:24:28
chr2	87211891	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:30:28
chr2	87211892	.	C	.	.	LowGQX	END=87211894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:21:26
chr2	87211895	.	C	.	.	LowGQX	END=87211896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:19:25
chr2	87211897	.	G	.	.	PASS	END=87211898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:30:23
chr2	87211899	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:82:24:21
chr2	87211900	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:84:30:21
chr2	87211901	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:99:24:19
chr2	87211902	.	T	.	.	LowMQ	END=87211903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:33:19
chr2	87211904	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:102:24:19
chr2	87211905	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:102:30:19
chr2	87211906	.	A	.	.	LowGQX;LowMQ	END=87211920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:21:18
chr2	87211921	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:114:30:18
chr2	87211922	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:115:27:18
chr2	87211923	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:115:30:18
chr2	87211924	.	A	.	.	LowGQX;LowMQ	END=87211925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:27:18
chr2	87211926	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:120:30:17
chr2	87211927	.	T	.	.	LowGQX;LowMQ	END=87211932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:24:17
chr2	87211933	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:120:30:16
chr2	87211934	.	A	.	.	LowGQX;LowMQ	END=87211936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:24:16
chr2	87211937	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:123:30:16
chr2	87211938	.	T	.	.	LowGQX;LowMQ	END=87211942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:21:15
chr2	87211943	.	G	.	.	LowGQX;LowMQ	END=87211945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:18:15
chr2	87211946	.	C	.	.	LowGQX;LowMQ	END=87211948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:21:14
chr2	87211949	.	C	.	.	LowGQX;LowMQ	END=87211960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:18:12
chr2	87211961	.	C	.	.	LowGQX;LowMQ	END=87211973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:12:8
chr2	87212687	.	T	.	.	LowGQX;LowMQ	END=87213380	GT	./.
chr2	87213381	.	G	.	.	LowGQX;LowMQ	END=87213394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:263:3:2
chr2	87213395	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87213396	.	T	.	.	LowGQX;LowMQ	END=87213490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:3:2
chr2	87213491	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87213492	.	A	.	.	LowGQX;LowMQ	END=87213508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:272:3:2
chr2	87213509	.	C	.	.	LowGQX;LowMQ	END=87213512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:323:12:3
chr2	87213513	.	T	.	.	LowGQX;LowMQ	END=87213514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:332:9:3
chr2	87213515	.	G	.	.	LowGQX;LowMQ	END=87213518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:294:12:3
chr2	87213519	.	T	.	.	LowGQX;LowMQ	END=87213520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:295:9:3
chr2	87213521	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:289:15:3
chr2	87213522	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:289:9:3
chr2	87213523	.	A	.	.	LowGQX;LowMQ	END=87213526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:299:15:4
chr2	87213527	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:294:21:4
chr2	87213528	.	A	.	.	LowGQX;LowMQ	END=87213531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:301:12:4
chr2	87213532	.	T	.	.	LowGQX;LowMQ	END=87213533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:296:18:4
chr2	87213534	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:298:0:4
chr2	87213535	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:308:21:4
chr2	87213536	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:306:12:4
chr2	87213537	.	A	.	.	LowGQX;LowMQ	END=87213539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:301:15:4
chr2	87213540	.	A	.	.	LowGQX;LowMQ	END=87213541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:301:12:4
chr2	87213542	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:304:24:4
chr2	87213543	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:303:18:4
chr2	87213544	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:301:24:4
chr2	87213545	.	G	.	.	LowGQX;LowMQ	END=87213546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:303:18:4
chr2	87213547	.	A	.	.	LowGQX;LowMQ	END=87213553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:295:21:4
chr2	87213554	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:301:1:5
chr2	87213555	.	G	.	.	LowGQX;LowMQ	END=87213557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:300:18:5
chr2	87213558	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:300:27:5
chr2	87213559	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:303:18:5
chr2	87213560	.	G	.	.	LowGQX;LowMQ	END=87213562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:300:21:4
chr2	87213563	.	G	.	.	LowGQX;LowMQ	END=87213564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:302:18:4
chr2	87213565	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:302:15:4
chr2	87213566	.	A	.	.	LowGQX;LowMQ	END=87213568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:304:21:4
chr2	87213569	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:342:30:5
chr2	87213570	.	T	.	.	LowGQX;LowMQ	END=87213573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:342:24:5
chr2	87213574	.	A	.	.	LowMQ	END=87213588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:312:30:5
chr2	87213589	.	A	.	.	LowMQ	END=87213597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:317:39:6
chr2	87213598	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:333:14:6
chr2	87213599	.	G	.	.	LowMQ	END=87213620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:320:39:6
chr2	87213621	.	T	.	.	LowMQ	END=87213622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:327:36:6
chr2	87213623	.	T	.	.	LowMQ	END=87213624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:328:48:6
chr2	87213625	.	G	.	.	LowMQ	END=87213628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:328:33:6
chr2	87213629	.	A	.	.	LowMQ	END=87213636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:330:42:6
chr2	87213637	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:341:36:6
chr2	87213638	.	A	.	.	LowMQ	END=87213658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:342:39:6
chr2	87213659	.	A	.	.	LowMQ	END=87213663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:357:36:6
chr2	87213664	.	G	.	.	LowMQ	END=87213666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:351:33:6
chr2	87213667	.	T	.	.	LowMQ	END=87213670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:357:42:6
chr2	87213671	.	G	.	.	LowMQ	END=87213676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:375:66:7
chr2	87213677	.	G	.	.	LowMQ	END=87213703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:366:75:8
chr2	87213704	.	A	.	.	LowMQ	END=87213762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:333:87:8
chr2	87213763	.	G	.	.	LowMQ	END=87213799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:435:99:11
chr2	87213800	.	G	.	.	LowMQ	END=87213945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:559:99:12
chr2	87213946	.	T	.	.	LowMQ	END=87213969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:600:99:16
chr2	87213970	.	T	.	.	PASS	END=87214044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:610:99:20
chr2	87214045	.	T	.	.	PASS	END=87214103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:510:99:27
chr2	87214104	.	A	.	.	PASS	END=87214176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:434:99:21
chr2	87214177	.	T	.	.	PASS	END=87214184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:440:99:20
chr2	87214185	.	T	.	.	LowMQ	END=87214203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:360:99:14
chr2	87214204	.	A	.	.	LowMQ	END=87214276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:292:99:12
chr2	87214277	.	T	.	.	LowMQ	END=87214287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:263:99:11
chr2	87214288	.	T	.	.	LowMQ	END=87214386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:81:9
chr2	87214387	.	A	.	.	LowMQ	END=87214432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:78:7
chr2	87214433	.	T	.	.	LowMQ	END=87214438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:249:72:7
chr2	87214439	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:251:57:7
chr2	87214440	.	C	.	.	LowMQ	END=87214451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:245:66:7
chr2	87214452	.	G	.	.	LowMQ	END=87214456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:51:6
chr2	87214457	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:216:36:6
chr2	87214458	.	C	.	.	LowMQ	END=87214459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:48:6
chr2	87214460	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:217:18:6
chr2	87214461	.	C	.	.	LowMQ	END=87214463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:36:6
chr2	87214464	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:209:33:6
chr2	87214465	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:206:27:6
chr2	87214466	.	G	.	.	LowMQ	END=87214468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:30:6
chr2	87214469	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:202:27:6
chr2	87214470	.	A	.	.	LowMQ	END=87214473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:33:6
chr2	87214474	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:203:27:6
chr2	87214475	.	G	.	.	LowMQ	END=87214492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:30:5
chr2	87214493	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:198:24:5
chr2	87214494	.	A	.	.	LowGQX;LowMQ	END=87214505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:15:4
chr2	87214506	.	A	.	.	LowGQX;LowMQ	END=87214508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:6:3
chr2	87214509	.	G	.	.	LowGQX;LowMQ	END=87214541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:3:2
chr2	87214542	.	A	.	.	LowGQX;LowMQ	END=87214548	GT	./.
chr2	87214549	.	T	.	.	LowGQX;LowMQ	END=87214683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:3:2
chr2	87214684	.	C	.	.	LowGQX;LowMQ	END=87214699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:3:2
chr2	87214700	.	T	.	.	LowGQX;LowMQ	END=87214800	GT	./.
chr2	87214801	.	A	.	.	LowGQX;LowMQ	END=87214809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:3:2
chr2	87214810	.	G	.	.	LowGQX;LowMQ	END=87214831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:9:3
chr2	87214832	.	C	.	.	LowGQX;LowMQ	END=87214880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:15:5
chr2	87214881	.	A	.	.	LowGQX;LowMQ	END=87214882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:9:5
chr2	87214883	.	G	.	.	LowGQX;LowMQ	END=87214896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:15:5
chr2	87214897	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:118:12:5
chr2	87214898	.	T	.	.	LowGQX;LowMQ	END=87214911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:15:5
chr2	87214912	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:104:12:5
chr2	87214913	.	C	.	.	LowGQX;LowMQ	END=87214917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:18:5
chr2	87214918	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:101:9:5
chr2	87214919	.	A	.	.	LowGQX;LowMQ	END=87214922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:15:5
chr2	87221963	.	G	.	.	LowGQX	END=87222161	GT	./.
chr2	87224674	.	C	.	.	LowGQX	END=87224881	GT	./.
chr2	87239543	.	A	.	.	LowGQX	END=87239702	GT	./.
chr2	87243373	.	G	.	.	LowMQ	END=87243389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:66:17
chr2	87243390	.	G	.	.	LowMQ	END=87243394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:66:16
chr2	87243395	.	G	.	.	LowMQ	END=87243411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:66:14
chr2	87243412	.	A	.	.	LowMQ	END=87243440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:51:12
chr2	87243441	.	A	.	.	LowMQ	END=87243451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:45:11
chr2	87243452	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:141:7:11
chr2	87243453	.	C	.	.	LowMQ	END=87243461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:45:10
chr2	87243462	.	G	.	.	LowMQ	END=87243474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:39:9
chr2	87243475	.	T	.	.	LowMQ	END=87243493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:48:9
chr2	87243494	.	T	.	.	LowMQ	END=87243500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:60:9
chr2	87243501	.	T	C	310.99	LowMQ;LowQD	BaseQRankSum=-0.116;DP=201;Dels=0.00;FS=2.192;HRun=0;HaplotypeScore=2.8408;MQ=9;MQ0=177;MQRankSum=1.448;QD=1.55;ReadPosRankSum=-0.116;SB=-82.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:153,48:201:99:341,0,246:9:99:0.239
chr2	87243502	.	T	.	.	LowMQ	END=87243522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:57:9
chr2	87243523	.	T	.	.	LowMQ	END=87243546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:51:9
chr2	87243547	.	G	.	.	LowMQ	END=87243556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:45:9
chr2	87243557	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:167:39:9
chr2	87243558	.	A	.	.	LowMQ	END=87243583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:45:9
chr2	87244618	.	A	.	.	LowGQX;LowMQ	END=87244621	GT	./.
chr2	87244622	.	T	.	.	LowGQX;LowMQ	END=87244653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:3:5
chr2	87244654	.	G	.	.	LowGQX;LowMQ	END=87244655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:6:6
chr2	87244656	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87244657	.	G	.	.	LowGQX;LowMQ	END=87244758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:3:6
chr2	87244759	.	G	.	.	LowGQX;LowMQ	END=87244786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:3:4
chr2	87244787	.	T	.	.	LowGQX;LowMQ	END=87244813	GT	./.
chr2	87248773	.	T	.	.	LowGQX;LowMQ	END=87248777	GT	./.
chr2	87248778	.	C	.	.	LowGQX;LowMQ	END=87248791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:3:3
chr2	87248792	.	A	.	.	LowGQX;LowMQ	END=87248803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:6:4
chr2	87248804	.	A	.	.	LowGQX;LowMQ	END=87248841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:9:5
chr2	87248842	.	A	.	.	LowGQX;LowMQ	END=87248866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:12:6
chr2	87248867	.	G	.	.	LowGQX;LowMQ	END=87248870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:9:6
chr2	87248871	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:146:15:6
chr2	87248872	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:143:9:6
chr2	87248873	.	A	.	.	LowGQX;LowMQ	END=87248877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:12:6
chr2	87248878	.	A	.	.	LowGQX;LowMQ	END=87248885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:15:7
chr2	87248886	.	A	.	.	LowGQX;LowMQ	END=87248893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:12:7
chr2	87248894	.	C	.	.	LowGQX;LowMQ	END=87248898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:18:7
chr2	87248899	.	T	.	.	LowGQX;LowMQ	END=87248901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:15:7
chr2	87248902	.	T	.	.	LowGQX;LowMQ	END=87248913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:18:7
chr2	87248914	.	C	.	.	LowGQX;LowMQ	END=87248922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:15:7
chr2	87248923	.	A	.	.	LowGQX;LowMQ	END=87248927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:18:7
chr2	87248928	.	C	.	.	LowGQX;LowMQ	END=87248929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:9:8
chr2	87248930	.	A	.	.	LowGQX;LowMQ	END=87248937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:15:8
chr2	87248938	.	T	.	.	LowGQX;LowMQ	END=87248948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:12:8
chr2	87248949	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:81:6:8
chr2	87248950	.	A	.	.	LowGQX;LowMQ	END=87248954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:9:8
chr2	87248955	.	G	.	.	LowGQX;LowMQ	END=87248963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:6:7
chr2	87248964	.	T	.	.	LowGQX;LowMQ	END=87248978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:9:9
chr2	87248979	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:51:0:10
chr2	87248980	.	G	.	.	LowGQX;LowMQ	END=87248981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:9:10
chr2	87248982	.	A	.	.	LowGQX;LowMQ	END=87248985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:12:11
chr2	87257916	.	A	.	.	LowGQX	END=87258075	GT	./.
chr2	87258855	.	C	.	.	LowGQX;LowMQ	END=87258860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:15:17
chr2	87258861	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:38:9:15
chr2	87258862	.	T	.	.	LowGQX;LowMQ	END=87258866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:15:15
chr2	87258867	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:38:9:15
chr2	87258868	.	A	.	.	LowGQX;LowMQ	END=87258872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:12:15
chr2	87258873	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:38:9:15
chr2	87258874	.	A	.	.	LowGQX;LowMQ	END=87258878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:12:13
chr2	87258879	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:43:9:13
chr2	87258880	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:43:15:13
chr2	87258881	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:44:9:13
chr2	87258882	.	G	.	.	LowGQX;LowMQ	END=87258884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:12:12
chr2	87258885	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:50:9:12
chr2	87258886	.	A	.	.	LowGQX;LowMQ	END=87258892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:12:11
chr2	87258893	.	A	.	.	LowGQX;LowMQ	END=87258899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:12:10
chr2	87258900	.	A	.	.	LowGQX;LowMQ	END=87258903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:21:10
chr2	87258904	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:90:30:12
chr2	87258905	.	C	.	.	LowGQX;LowMQ	END=87258907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:24:12
chr2	87258908	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:90:30:12
chr2	87258909	.	G	.	.	LowGQX;LowMQ	END=87258911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:27:12
chr2	87258912	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:97:30:12
chr2	87258913	.	G	.	.	LowGQX;LowMQ	END=87258916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:27:12
chr2	87258917	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:100:30:12
chr2	87258918	.	A	.	.	LowGQX;LowMQ	END=87258919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:27:11
chr2	87258920	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:102:30:11
chr2	87258921	.	G	.	.	LowGQX;LowMQ	END=87258922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:27:11
chr2	87258923	.	G	.	.	LowMQ	END=87258925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:30:11
chr2	87258926	.	T	.	.	LowGQX;LowMQ	END=87258929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:21:11
chr2	87258930	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:107:30:11
chr2	87258931	.	A	.	.	LowGQX;LowMQ	END=87258932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:24:11
chr2	87258933	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:107:30:11
chr2	87258934	.	A	.	.	LowGQX;LowMQ	END=87258938;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:21:11
chr2	87258939	.	C	.	.	LowMQ	END=87258940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:30:11
chr2	87258941	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:110:1:11
chr2	87258942	.	T	.	.	LowMQ	END=87258945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:30:11
chr2	87258946	.	T	.	.	LowGQX;LowMQ	END=87258950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:24:11
chr2	87258951	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:112:30:11
chr2	87258952	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:113:27:11
chr2	87258953	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:113:30:11
chr2	87258954	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:117:27:11
chr2	87258955	.	A	.	.	LowMQ	END=87258956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:30:11
chr2	87258957	.	T	.	.	LowGQX;LowMQ	END=87258958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:24:11
chr2	87258959	.	G	.	.	LowMQ	END=87258968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:33:11
chr2	87258969	.	A	.	.	LowMQ	END=87258975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:30:11
chr2	87258976	.	G	.	.	LowMQ	END=87258983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:36:11
chr2	87258984	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:149:51:12
chr2	87258985	.	C	.	.	LowMQ	END=87258990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:36:11
chr2	87258991	.	A	.	.	LowMQ	END=87258997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:33:11
chr2	87258998	.	A	.	.	LowMQ	END=87259003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:36:11
chr2	87259004	.	A	.	.	LowMQ	END=87259019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:33:11
chr2	87259020	.	T	.	.	LowMQ	END=87259021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:45:12
chr2	87259192	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:112:27:9
chr2	87259193	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:112:18:9
chr2	87259194	.	T	.	.	LowGQX;LowMQ	END=87259196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:21:9
chr2	87259197	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:112:18:9
chr2	87259198	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:113:27:10
chr2	87259199	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:112:30:10
chr2	87259200	.	G	.	.	LowGQX;LowMQ	END=87259202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:24:10
chr2	87259203	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:114:30:10
chr2	87259204	.	A	.	.	LowGQX;LowMQ	END=87259206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:27:10
chr2	87259207	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:115:30:10
chr2	87259208	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:115:24:10
chr2	87259209	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:115:30:10
chr2	87259210	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:115:21:10
chr2	87259211	.	G	.	.	LowMQ	END=87259213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:30:10
chr2	87259214	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:114:27:10
chr2	87259215	.	T	.	.	LowMQ	END=87259218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:30:10
chr2	87259219	.	T	.	.	LowGQX;LowMQ	END=87259220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:27:10
chr2	87259221	.	T	.	.	LowMQ	END=87259224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:30:10
chr2	87259225	.	C	.	.	LowMQ	END=87259241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:36:12
chr2	87259242	.	G	.	.	LowMQ	END=87259249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:42:14
chr2	87259250	.	C	.	.	LowMQ	END=87259265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:51:17
chr2	87259266	.	T	.	.	PASS	END=87259275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:57:20
chr2	87259276	.	G	.	.	PASS	END=87259289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:57:23
chr2	87259290	.	C	.	.	PASS	END=87259308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:60:26
chr2	87259309	.	T	.	.	PASS	END=87259318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:31
chr2	87259319	.	C	.	.	PASS	END=87259339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:34
chr2	87259340	.	T	.	.	PASS	END=87259342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:45:35
chr2	87259343	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:20:35
chr2	87259344	.	A	.	.	PASS	END=87259362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:35
chr2	87259363	.	T	.	.	PASS	END=87259370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:42:36
chr2	87261271	.	T	.	.	PASS	END=87261273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:48:28
chr2	87261274	.	C	.	.	PASS	END=87261284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:63:29
chr2	87261285	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:54:29
chr2	87261286	.	C	.	.	PASS	END=87261324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:66:29
chr2	87261325	.	T	C	6.17	LowGQX;LowQD;SB	BaseQRankSum=0.304;DP=43;Dels=0.00;FS=7.102;HRun=0;HaplotypeScore=3.8381;MQ=33;MQ0=9;MQRankSum=-0.425;QD=0.14;ReadPosRankSum=-0.364;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:38,5:43:34.97:35,0,735:33:6:0.116
chr2	87261326	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:47:33
chr2	87261327	.	C	.	.	PASS	END=87261392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:69:32
chr2	87261393	.	A	.	.	PASS	END=87261407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:57:32
chr2	87261408	.	A	.	.	PASS	END=87261423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:51:32
chr2	87264346	.	T	.	.	LowGQX;LowMQ	END=87264715	GT	./.
chr2	87270825	.	A	.	.	LowGQX;LowMQ	END=87270829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:6:5
chr2	87270830	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:92:3:5
chr2	87270831	.	C	.	.	LowGQX;LowMQ	END=87270848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:6:4
chr2	87270849	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:109:3:4
chr2	87270850	.	C	.	.	LowGQX;LowMQ	END=87270851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:9:4
chr2	87270852	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:111:6:5
chr2	87270853	.	G	.	.	LowGQX;LowMQ	END=87270855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:9:5
chr2	87270856	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:119:6:5
chr2	87270857	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:119:12:5
chr2	87270858	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:119:6:5
chr2	87270859	.	T	.	.	LowGQX;LowMQ	END=87270863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:9:5
chr2	87270864	.	G	.	.	LowGQX;LowMQ	END=87270865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:3:5
chr2	87270866	.	C	.	.	LowGQX;LowMQ	END=87270876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:9:4
chr2	87270877	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:128:3:4
chr2	87270878	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:128:12:4
chr2	87270879	.	A	.	.	LowGQX;LowMQ	END=87270880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:6:4
chr2	87270881	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:126:12:4
chr2	87270882	.	T	.	.	LowGQX;LowMQ	END=87270883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:6:4
chr2	87270884	.	C	.	.	LowGQX;LowMQ	END=87270898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:9:4
chr2	87270899	.	A	.	.	LowGQX;LowMQ	END=87270903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:6:4
chr2	87270904	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:121:12:5
chr2	87270905	.	G	.	.	LowGQX;LowMQ	END=87270906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:6:5
chr2	87270907	.	G	.	.	LowGQX;LowMQ	END=87270922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:9:5
chr2	87270923	.	A	.	.	LowGQX;LowMQ	END=87270926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:3:4
chr2	87270927	.	G	.	.	LowGQX;LowMQ	END=87270933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:9:4
chr2	87270934	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:132:6:4
chr2	87270935	.	A	.	.	LowGQX;LowMQ	END=87270940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:9:4
chr2	87270941	.	C	.	.	LowGQX;LowMQ	END=87270951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:12:4
chr2	87270952	.	T	.	.	LowGQX;LowMQ	END=87270955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:9:4
chr2	87270956	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:126:6:4
chr2	87270957	.	A	.	.	LowGQX;LowMQ	END=87270962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:9:4
chr2	87270963	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:124:0:4
chr2	87270964	.	A	.	.	LowGQX;LowMQ	END=87270988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:9:4
chr2	87270989	.	A	.	42	LowGQX;LowMQ	DP=106;MQ=5;MQ0=102	GT:AD:DP:GQ:MQ:GQX	0/0:83:106:12.01:5:12
chr2	87270990	.	G	.	.	LowGQX;LowMQ	END=87271012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:9:4
chr2	87271013	.	A	.	.	LowGQX;LowMQ	END=87271018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:6:4
chr2	87271019	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:87:3:4
chr2	87271020	.	T	.	.	LowGQX;LowMQ	END=87271042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:6:4
chr2	87271043	.	G	A	14.48	LowGQ;LowGQX;LowMQ;LowQD;SB	BaseQRankSum=0.736;DP=81;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=4;MQ0=78;MQRankSum=-0.736;QD=0.18;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:65,16:81:20.62:44,0,21:4:14:0.198
chr2	87271044	.	T	.	.	LowGQX;LowMQ	END=87271067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:6:4
chr2	87271068	.	C	.	.	LowGQX;LowMQ	END=87271086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:3:3
chr2	87271087	.	T	.	.	LowGQX;LowMQ	END=87271089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:3:3
chr2	87271090	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	87271091	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:56:3:3
chr2	87271092	.	C	.	.	LowGQX;LowMQ	END=87271107	GT	./.
chr2	87274260	.	T	.	.	LowGQX;LowMQ	END=87274429	GT	./.
chr2	87276701	.	T	.	.	PASS	END=87276789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:35
chr2	87276790	.	C	.	.	PASS	END=87276810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:31
chr2	87276811	.	T	C	1117.34	PASS	BaseQRankSum=-0.493;DP=115;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=9.6192;MQ=30;MQ0=25;MQRankSum=-0.137;QD=9.72;ReadPosRankSum=-0.646;SB=-447.44	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:58,57:115:99:1147,0,871:30:99:0.496
chr2	87276812	.	C	.	.	PASS	END=87276856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:25
chr2	87276857	.	G	.	.	PASS	END=87276921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:24
chr2	87276922	.	A	.	.	PASS	END=87276961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:26
chr2	87276962	.	A	.	.	PASS	END=87276990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:29
chr2	87408196	.	A	.	.	LowMQ	END=87408201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:39:15
chr2	87408202	.	A	.	.	LowMQ	END=87408207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:42:15
chr2	87408208	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:64:39:16
chr2	87408209	.	A	.	.	LowMQ	END=87408231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:45:16
chr2	87408232	.	C	.	.	LowMQ	END=87408237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:42:18
chr2	87408238	.	T	.	.	PASS	END=87408246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:30:20
chr2	87408247	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:41:21:20
chr2	87408248	.	A	.	.	PASS	END=87408249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:30:20
chr2	87408250	.	T	.	.	LowGQX	END=87408251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:21:21
chr2	87408252	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:30:21
chr2	87408253	.	A	.	.	LowGQX	END=87408254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:18:21
chr2	87408255	.	C	.	.	LowGQX	END=87408260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:21:21
chr2	87408261	.	A	.	.	LowGQX	END=87408266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:18:22
chr2	87408267	.	G	.	.	LowGQX	END=87408272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:15:22
chr2	87408273	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:12:22
chr2	87408274	.	G	.	.	LowGQX	END=87408280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:15:22
chr2	87408281	.	T	G	104.14	PASS	BaseQRankSum=-0.573;DP=22;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.9469;MQ=26;MQ0=13;MQRankSum=-2.054;QD=4.73;ReadPosRankSum=-0.573;SB=-19.68	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,19:22:59.86:134,0,60:26:60:0.864
chr2	87408282	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:15:26
chr2	87408283	.	C	.	.	LowGQX	END=87408284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:18:26
chr2	87408285	.	G	.	.	LowGQX	END=87408289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:21:26
chr2	87408290	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:18:27
chr2	87408291	.	G	.	.	LowGQX	END=87408294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:21:27
chr2	87408295	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:33:27
chr2	87408555	.	T	.	.	PASS	END=87408603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:51:27
chr2	87408604	.	T	.	.	PASS	END=87408646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:63:21
chr2	87408647	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:78:72:20
chr2	87408648	.	C	.	.	LowMQ	END=87408665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:66:17
chr2	87408666	.	T	.	.	LowMQ	END=87408695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:51:16
chr2	87408696	.	A	.	.	LowMQ	END=87408708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:42:16
chr2	87410047	.	A	.	.	PASS	END=87410069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:45
chr2	87410070	.	T	C	12.49	LowGQX;LowQD;SB	BaseQRankSum=0.554;DP=32;Dels=0.00;FS=8.089;HRun=1;HaplotypeScore=0.0000;MQ=45;MQ0=5;MQRankSum=-3.587;QD=0.39;ReadPosRankSum=-0.437;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:21,11:32:42.23:42,0,598:45:12:0.344
chr2	87410071	.	T	.	.	PASS	END=87410082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:57:42
chr2	87410083	.	T	.	.	PASS	END=87410090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:57:39
chr2	87410091	.	T	.	.	PASS	END=87410102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:60:38
chr2	87410103	.	G	.	.	PASS	END=87410115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:57:38
chr2	87410116	.	A	.	.	PASS	END=87410135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:72:37
chr2	87410136	.	C	.	.	PASS	END=87410205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:78:36
chr2	87410206	.	G	.	.	PASS	END=87410220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:38
chr2	87412594	.	T	.	.	LowGQX;LowMQ	END=87412598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:6:8
chr2	87412599	.	C	.	.	LowGQX;LowMQ	END=87412601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:12:8
chr2	87412602	.	A	.	.	LowGQX;LowMQ	END=87412606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:9:8
chr2	87412607	.	A	.	.	LowGQX;LowMQ	END=87412612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:18:9
chr2	87412613	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:52:12:9
chr2	87412614	.	C	.	.	LowGQX;LowMQ	END=87412615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:18:9
chr2	87412616	.	T	.	.	LowGQX;LowMQ	END=87412617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:12:9
chr2	87412618	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:53:18:9
chr2	87412619	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:53:12:9
chr2	87412620	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:53:18:9
chr2	87412621	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:53:12:9
chr2	87412622	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:61:18:8
chr2	87412623	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:61:12:8
chr2	87412624	.	C	.	.	LowGQX;LowMQ	END=87412629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:15:8
chr2	87412630	.	C	.	.	LowGQX;LowMQ	END=87412631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:12:8
chr2	87412632	.	G	.	.	LowGQX;LowMQ	END=87412633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:15:8
chr2	87412634	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:67:12:8
chr2	87412635	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:67:18:8
chr2	87412636	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:69:12:8
chr2	87412637	.	G	.	.	LowGQX;LowMQ	END=87412641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:15:8
chr2	87412642	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:67:12:8
chr2	87412643	.	T	.	.	LowGQX;LowMQ	END=87412645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:15:8
chr2	87412646	.	T	.	.	LowGQX;LowMQ	END=87412652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:12:8
chr2	87412653	.	A	.	.	LowGQX;LowMQ	END=87412659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:15:8
chr2	87412660	.	A	.	.	LowGQX;LowMQ	END=87412667;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:18:9
chr2	87412668	.	C	.	.	LowGQX;LowMQ	END=87412671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:15:9
chr2	87412672	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:72:21:8
chr2	87412673	.	T	.	.	LowGQX;LowMQ	END=87412675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:15:8
chr2	87412676	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:73:24:9
chr2	87412677	.	C	.	.	LowGQX;LowMQ	END=87412682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:18:9
chr2	87412683	.	A	.	.	LowGQX;LowMQ	END=87412685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:21:9
chr2	87412686	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:80:18:9
chr2	87412687	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:80:24:9
chr2	87412688	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:80:18:9
chr2	87412689	.	C	.	.	LowGQX;LowMQ	END=87412699;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:21:9
chr2	87412700	.	T	.	.	LowGQX;LowMQ	END=87412705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:18:9
chr2	87412706	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:76:24:9
chr2	87412707	.	A	.	.	LowGQX;LowMQ	END=87412710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:18:9
chr2	87412711	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:75:24:9
chr2	87412712	.	T	.	.	LowGQX;LowMQ	END=87412713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:18:9
chr2	87412714	.	C	.	.	LowGQX;LowMQ	END=87412715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:21:9
chr2	87412716	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:74:18:9
chr2	87412717	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:74:2:9
chr2	87412718	.	A	.	.	LowGQX;LowMQ	END=87412719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:18:8
chr2	87412720	.	G	.	.	LowGQX;LowMQ	END=87412726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:15:8
chr2	87412727	.	G	.	.	LowGQX;LowMQ	END=87412728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:12:8
chr2	87412729	.	G	.	.	LowGQX;LowMQ	END=87412733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:18:8
chr2	87412734	.	T	.	.	LowGQX;LowMQ	END=87412735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:12:9
chr2	87412736	.	G	.	.	LowGQX;LowMQ	END=87412737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:18:9
chr2	87412738	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:52:12:9
chr2	87412739	.	C	.	.	LowGQX;LowMQ	END=87412741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:18:9
chr2	87412742	.	G	.	.	LowGQX;LowMQ	END=87412743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:12:9
chr2	87412744	.	A	.	.	LowGQX;LowMQ	END=87412748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:15:9
chr2	87414268	.	A	.	.	PASS	END=87414299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:48
chr2	87414300	.	G	.	.	PASS	END=87414317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:44
chr2	87414318	.	A	.	.	PASS	END=87414329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:45
chr2	87414330	.	T	C	130.09	LowQD;SB	BaseQRankSum=1.124;DP=98;Dels=0.00;FS=5.498;HRun=2;HaplotypeScore=5.2556;MQ=45;MQ0=32;MQRankSum=-5.385;QD=1.33;ReadPosRankSum=2.342;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:53,44:98:99:160,0,1151:45:99:0.454
chr2	87414331	.	C	.	.	PASS	END=87414349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:93:41
chr2	87414350	.	C	.	.	PASS	END=87414366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:72:36
chr2	87414367	.	T	.	.	PASS	END=87414378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:54:33
chr2	87414379	.	A	.	.	PASS	END=87414394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:42:32
chr2	87414395	.	G	.	.	PASS	END=87414418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:39:31
chr2	87415972	.	T	.	.	LowMQ	END=87415976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:33:8
chr2	87415977	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:203:27:8
chr2	87415978	.	T	.	.	LowMQ	END=87415995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:36:8
chr2	87415996	.	T	.	.	LowMQ	END=87416009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:249:48:8
chr2	87416010	.	A	.	.	LowMQ	END=87416012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:274:60:9
chr2	87416013	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:301:45:10
chr2	87416014	.	C	.	.	LowMQ	END=87416023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:306:66:10
chr2	87416024	.	T	.	.	LowMQ	END=87416028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:318:69:11
chr2	87416029	.	T	.	.	LowMQ	END=87416042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:321:78:11
chr2	87416043	.	T	.	.	LowMQ	END=87416051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:335:75:11
chr2	87416052	.	G	.	.	LowMQ	END=87416054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:355:96:11
chr2	87416055	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:369:69:12
chr2	87416056	.	T	.	.	LowMQ	END=87416126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:288:81:12
chr2	87416127	.	T	.	.	LowMQ	END=87416128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:278:75:13
chr2	87416129	.	C	.	.	LowMQ	END=87416159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:78:13
chr2	87416160	.	A	.	.	LowMQ	END=87416161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:87:13
chr2	87416162	.	C	.	.	LowMQ	END=87416170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:66:13
chr2	87416171	.	G	.	.	LowMQ	END=87416181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:54:13
chr2	87420566	.	T	.	.	LowMQ	END=87420587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:246:99:19
chr2	87420588	.	C	.	.	PASS	END=87420616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:267:99:20
chr2	87420617	.	A	.	.	PASS	END=87420657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:27
chr2	87420658	.	T	.	.	PASS	END=87420708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:36
chr2	87420709	.	A	.	.	PASS	END=87420735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:47
chr2	87420736	.	T	.	.	PASS	END=87420753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:52
chr2	87420754	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:117:99:57
chr2	87423586	.	A	.	.	LowMQ	END=87423592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:33:15
chr2	87423593	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:57:45:15
chr2	87423594	.	A	.	.	LowMQ	END=87423596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:33:14
chr2	87423597	.	T	.	.	LowMQ	END=87423604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:39:14
chr2	87423605	.	G	.	.	LowMQ	END=87423610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:48:15
chr2	87423611	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:69:39:15
chr2	87423612	.	C	.	.	LowMQ	END=87423620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:48:15
chr2	87423621	.	C	.	.	LowMQ	END=87423630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:45:15
chr2	87423631	.	T	.	.	LowMQ	END=87423648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:54:17
chr2	87423649	.	T	.	.	LowMQ	END=87423682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:63:18
chr2	87423683	.	A	.	.	LowMQ	END=87423706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:72:18
chr2	87423707	.	A	.	.	PASS	END=87423745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:72:20
chr2	87423746	.	G	.	.	PASS	END=87423752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:72:24
chr2	88019380	.	A	.	.	PASS	END=88019451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:37
chr2	88019452	.	C	.	.	PASS	END=88019503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:28
chr2	88019504	.	T	.	.	PASS	END=88019540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:78:27
chr2	88021779	.	C	.	.	LowGQX;LowMQ	END=88021938	GT	./.
chr2	88025445	.	T	.	.	LowGQX;LowMQ	END=88025447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:21:19
chr2	88025448	.	C	.	.	LowGQX;LowMQ	END=88025449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:15:19
chr2	88025450	.	G	.	.	LowGQX;LowMQ	END=88025457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:21:16
chr2	88025458	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:34:13:16
chr2	88025459	.	G	.	.	LowGQX;LowMQ	END=88025467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:21:14
chr2	88025468	.	C	.	.	LowGQX;LowMQ	END=88025479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:18:13
chr2	88025480	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:51:15:13
chr2	88025481	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:51:21:13
chr2	88025482	.	G	.	.	LowGQX;LowMQ	END=88025487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:12:10
chr2	88025488	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:55:9:11
chr2	88025489	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:55:15:11
chr2	88025490	.	T	.	.	LowGQX;LowMQ	END=88025495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:18:10
chr2	88025496	.	T	.	.	LowGQX;LowMQ	END=88025503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:12:8
chr2	88025504	.	T	.	.	LowGQX;LowMQ	END=88025510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:15:9
chr2	88025511	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:57:12:9
chr2	88025512	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:58:18:9
chr2	88025513	.	C	.	.	LowGQX;LowMQ	END=88025514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:12:9
chr2	88025515	.	C	.	.	LowGQX;LowMQ	END=88025516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:15:8
chr2	88025517	.	C	.	.	LowGQX;LowMQ	END=88025519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:12:8
chr2	88025520	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:64:18:8
chr2	88025521	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:62:12:8
chr2	88025522	.	T	.	.	LowGQX;LowMQ	END=88025524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:15:8
chr2	88025525	.	C	.	.	LowGQX;LowMQ	END=88025526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:18:9
chr2	88025527	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:63:15:9
chr2	88025528	.	G	.	.	LowGQX;LowMQ	END=88025549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:18:9
chr2	88025550	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:65:15:9
chr2	88025551	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:65:21:9
chr2	88025552	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:66:15:9
chr2	88025553	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:66:1:9
chr2	88025554	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:66:24:9
chr2	88025555	.	C	.	.	LowGQX;LowMQ	END=88025558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:15:9
chr2	88025559	.	T	.	.	LowGQX;LowMQ	END=88025563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:18:8
chr2	88025564	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:77:12:8
chr2	88025565	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:77:18:8
chr2	88025566	.	A	.	.	LowGQX;LowMQ	END=88025568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:12:8
chr2	88025569	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:82:6:8
chr2	88025570	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:82:15:8
chr2	88025571	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:82:9:8
chr2	88025572	.	G	.	.	LowGQX;LowMQ	END=88025573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:15:8
chr2	88025574	.	T	.	.	LowGQX;LowMQ	END=88025577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:12:8
chr2	88025578	.	G	.	.	LowGQX;LowMQ	END=88025580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:15:7
chr2	88025581	.	T	.	.	LowGQX;LowMQ	END=88025582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:12:7
chr2	88025583	.	C	.	.	LowGQX;LowMQ	END=88025584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:18:7
chr2	88025585	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:88:12:7
chr2	88025586	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:87:0:7
chr2	88025587	.	A	.	.	LowGQX;LowMQ	END=88025596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:15:7
chr2	88025597	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:98:21:8
chr2	88025598	.	T	.	.	LowGQX;LowMQ	END=88025605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:15:7
chr2	88025606	.	T	.	.	LowGQX;LowMQ	END=88025607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:12:7
chr2	88025608	.	T	.	.	LowGQX;LowMQ	END=88025638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:15:6
chr2	88025639	.	A	.	.	LowGQX;LowMQ	END=88025652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:12:5
chr2	88025653	.	T	.	.	LowGQX;LowMQ	END=88025654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:6:5
chr2	88025655	.	T	.	.	LowGQX;LowMQ	END=88025675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:9:5
chr2	88025676	.	T	.	.	LowGQX;LowMQ	END=88025715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:6:4
chr2	88025716	.	T	.	.	LowGQX;LowMQ	END=88025734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:6:5
chr2	88031835	.	T	.	.	LowGQX;LowMQ	END=88031879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:3:4
chr2	88031880	.	A	.	.	LowGQX;LowMQ	END=88031914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:9:5
chr2	88031915	.	A	.	.	LowGQX;LowMQ	END=88031928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:15:6
chr2	88031929	.	A	.	.	LowGQX;LowMQ	END=88031931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:12:6
chr2	88031932	.	G	.	.	LowGQX;LowMQ	END=88031935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:18:6
chr2	88031936	.	C	.	.	LowGQX;LowMQ	END=88031963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:21:7
chr2	88031964	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:173:30:7
chr2	88031965	.	C	.	.	LowGQX;LowMQ	END=88031967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:27:7
chr2	88031968	.	G	.	.	LowMQ	END=88031971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:30:7
chr2	88031972	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:174:27:7
chr2	88031973	.	T	.	.	LowMQ	END=88031974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:30:7
chr2	88031975	.	T	.	.	LowGQX;LowMQ	END=88031987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:21:7
chr2	88031988	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:165:30:8
chr2	88031989	.	T	.	.	LowGQX;LowMQ	END=88031991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:24:8
chr2	88031992	.	T	.	.	LowMQ	END=88031993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:30:8
chr2	88031994	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:169:0:8
chr2	88031995	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:165:30:8
chr2	88031996	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:165:24:8
chr2	88031997	.	T	.	.	LowMQ	END=88032001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:30:8
chr2	88032002	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:172:27:8
chr2	88032003	.	T	.	.	LowMQ	END=88032023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:30:8
chr2	88032024	.	C	.	.	LowMQ	END=88032028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:42:9
chr2	88032029	.	A	.	.	LowMQ	END=88032033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:36:9
chr2	88032034	.	G	.	.	LowMQ	END=88032055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:42:8
chr2	88032056	.	C	.	.	LowMQ	END=88032066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:39:8
chr2	88032067	.	A	.	.	LowMQ	END=88032074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:36:8
chr2	88032075	.	G	.	.	LowMQ	END=88032089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:42:9
chr2	88032090	.	A	.	.	LowMQ	END=88032100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:57:9
chr2	88032101	.	G	.	.	LowMQ	END=88032123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:66:11
chr2	88032124	.	C	.	.	LowMQ	END=88032155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:75:13
chr2	88032156	.	T	.	.	LowMQ	END=88032177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:72:18
chr2	88032178	.	A	.	.	PASS	END=88032184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:78:20
chr2	88032185	.	A	.	.	PASS	END=88032198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:78:22
chr2	88032199	.	C	.	.	PASS	END=88032204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:72:26
chr2	88035132	.	G	.	.	PASS	END=88035148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:51
chr2	88035149	.	A	.	.	PASS	END=88035181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:91:50
chr2	88035182	.	T	.	.	PASS	END=88035250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:39
chr2	88035251	.	T	.	.	PASS	END=88035288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:37
chr2	88037206	.	C	.	.	PASS	END=88037255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:31
chr2	88037256	.	G	.	.	PASS	END=88037292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:27
chr2	88037293	.	G	.	.	PASS	END=88037322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:96:21
chr2	88037323	.	A	.	.	LowMQ	END=88037330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:75:17
chr2	88037331	.	T	.	.	LowMQ	END=88037348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:51:13
chr2	88037349	.	A	.	.	LowMQ	END=88037371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:42:12
chr2	88037481	.	A	.	.	LowMQ	END=88037486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:54:12
chr2	88037487	.	G	.	.	LowMQ	END=88037507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:45:12
chr2	88037508	.	A	.	.	LowMQ	END=88037516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:42:11
chr2	88037517	.	C	.	.	LowMQ	END=88037543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:48:11
chr2	88037544	.	A	.	.	LowMQ	END=88037546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:45:12
chr2	88037547	.	A	.	.	LowMQ	END=88037553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:51:12
chr2	88037554	.	A	.	.	LowMQ	END=88037572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:48:12
chr2	88037573	.	G	.	.	LowMQ	END=88037577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:51:13
chr2	88037578	.	G	.	.	LowMQ	END=88037583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:54:13
chr2	88037584	.	A	.	.	LowMQ	END=88037592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:51:13
chr2	88037593	.	T	.	.	LowMQ	END=88037596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:39:13
chr2	88037597	.	C	.	.	LowMQ	END=88037613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:33:13
chr2	88037614	.	A	.	.	LowMQ	END=88037632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:30:13
chr2	88037633	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:83:27:14
chr2	88038431	.	A	.	.	LowGQX	END=88038590	GT	./.
chr2	88045931	.	T	.	.	LowGQX	END=88046030	GT	./.
chr2	88047591	.	T	.	.	LowMQ	END=88047604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:51:15
chr2	88047605	.	C	.	.	LowMQ	END=88047608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:51:14
chr2	88047609	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:78:22:13
chr2	88047610	.	A	.	.	LowMQ	END=88047627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:42:12
chr2	88047628	.	C	.	.	LowMQ	END=88047632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:33:12
chr2	88047633	.	A	.	.	LowMQ	END=88047634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:36:13
chr2	88047635	.	T	.	.	LowMQ	END=88047639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:42:13
chr2	88047640	.	C	.	.	LowMQ	END=88047664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:54:11
chr2	88047665	.	G	.	.	LowMQ	END=88047692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:51:11
chr2	88047693	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:144:48:11
chr2	88047694	.	C	.	.	LowMQ	END=88047709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:63:11
chr2	88047710	.	T	.	.	LowMQ	END=88047712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:54:11
chr2	88047713	.	T	.	.	LowMQ	END=88047745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:57:11
chr2	88047746	.	T	.	.	LowMQ	END=88047747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:51:12
chr2	88051764	.	A	.	.	LowGQX;LowMQ	END=88051952	GT	./.
chr2	88053045	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:150:57:10
chr2	88053046	.	G	.	.	LowMQ	END=88053048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:42:10
chr2	88053049	.	C	.	.	LowMQ	END=88053058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:48:10
chr2	88053059	.	T	.	.	LowMQ	END=88053071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:63:10
chr2	88053072	.	C	.	.	LowMQ	END=88053082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:57:10
chr2	88053083	.	G	.	.	LowMQ	END=88053088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:60:10
chr2	88053089	.	G	.	.	LowMQ	END=88053106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:51:10
chr2	88053107	.	C	.	.	LowMQ	END=88053114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:48:10
chr2	88053115	.	T	.	.	LowMQ	END=88053137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:51:11
chr2	88053138	.	T	.	.	LowMQ	END=88053142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:60:13
chr2	88053143	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:106:37:14
chr2	88053144	.	G	.	.	LowMQ	END=88053175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:60:14
chr2	88053176	.	C	.	.	LowMQ	END=88053193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:69:15
chr2	88053194	.	A	.	.	LowMQ	END=88053200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:72:17
chr2	88053201	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:74:55:18
chr2	88053202	.	A	.	.	LowMQ	END=88053203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:84:18
chr2	88056819	.	C	.	.	LowGQX	END=88056833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:27
chr2	88056834	.	G	A	31.86	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=27;MQ0=0;QD=15.93;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.01:63,6,0:27:6:1.000
chr2	88056835	.	A	.	.	LowGQX	END=88056870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:27
chr2	88056871	.	T	.	.	LowGQX	.	GT	./.
chr2	88056872	.	T	.	.	LowGQX	END=88056884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:27
chr2	88056885	.	G	T	31.86	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=27;MQ0=0;QD=15.93;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.01:63,6,0:27:6:1.000
chr2	88056886	.	C	.	.	LowGQX	END=88056961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	88056962	.	T	.	.	LowGQX	END=88056978	GT	./.
chr2	88071686	.	A	.	.	LowGQX	END=88071894	GT	./.
chr2	88074390	.	T	.	.	LowGQX	END=88074447	GT	./.
chr2	88074448	.	G	.	.	LowGQX;LowMQ	END=88074598	GT	./.
chr2	88074599	.	G	.	.	LowGQX	END=88074604	GT	./.
chr2	88081630	.	A	.	.	LowGQX;LowMQ	END=88081706	GT	./.
chr2	88081707	.	A	.	.	LowGQX;LowMQ	END=88081710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:3:2
chr2	88081711	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	88081712	.	T	.	.	LowGQX;LowMQ	END=88081722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:3:2
chr2	88081723	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	88081724	.	C	.	.	LowGQX;LowMQ	END=88081728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:3:2
chr2	88081729	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr2	88081730	.	A	.	.	LowGQX;LowMQ	END=88081735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:3:3
chr2	88081736	.	C	.	.	LowGQX;LowMQ	END=88081744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:6:4
chr2	88081745	.	A	.	.	LowGQX;LowMQ	END=88081748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:3:4
chr2	88081749	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:120:9:4
chr2	88081750	.	T	.	.	LowGQX;LowMQ	END=88081751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:3:4
chr2	88081752	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:119:9:4
chr2	88081753	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:119:0:4
chr2	88081754	.	A	.	.	LowGQX;LowMQ	END=88081757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:6:4
chr2	88081758	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:115:3:4
chr2	88081759	.	T	.	.	LowGQX;LowMQ	END=88081772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:6:4
chr2	88081773	.	T	.	.	LowGQX;LowMQ	END=88081774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:3:4
chr2	88081775	.	C	.	.	LowGQX;LowMQ	END=88081808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:6:3
chr2	88081809	.	A	.	.	LowGQX;LowMQ	END=88081813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:9:4
chr2	88081814	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:131:6:4
chr2	88081815	.	T	.	.	LowGQX;LowMQ	END=88081830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:9:4
chr2	88081831	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:146:6:4
chr2	88081832	.	T	.	.	LowGQX;LowMQ	END=88081838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:9:4
chr2	88081839	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:144:3:4
chr2	88081840	.	G	.	.	LowGQX;LowMQ	END=88081842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:12:4
chr2	88081843	.	T	.	.	LowGQX;LowMQ	END=88081844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:6:4
chr2	88081845	.	A	.	.	LowGQX;LowMQ	END=88081853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:12:4
chr2	88081854	.	T	.	.	LowGQX;LowMQ	END=88081862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:9:3
chr2	88081863	.	A	.	.	LowGQX;LowMQ	END=88081864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:6:3
chr2	88081865	.	A	.	.	LowGQX;LowMQ	END=88081869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:12:3
chr2	88081870	.	G	.	.	LowGQX;LowMQ	END=88081873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:9:4
chr2	88081874	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:177:15:4
chr2	88081875	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:175:9:4
chr2	88081876	.	G	.	.	LowGQX;LowMQ	END=88081880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:12:4
chr2	88081881	.	G	.	.	LowGQX;LowMQ	END=88081883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:9:4
chr2	88081884	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:182:1:4
chr2	88081885	.	C	.	.	LowGQX;LowMQ	END=88081889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:12:3
chr2	88081890	.	T	.	.	LowGQX;LowMQ	END=88081891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:6:3
chr2	88081892	.	C	.	.	LowGQX;LowMQ	END=88081895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:9:3
chr2	88081896	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:195:6:3
chr2	88081897	.	G	.	.	LowGQX;LowMQ	END=88081899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:12:3
chr2	88081900	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	88081901	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:210:6:3
chr2	88081902	.	T	.	.	LowGQX;LowMQ	END=88081905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:9:3
chr2	88081906	.	T	.	.	LowGQX;LowMQ	END=88081907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:225:6:3
chr2	88081908	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:225:3:3
chr2	88081909	.	T	.	.	LowGQX;LowMQ	END=88081910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:9:3
chr2	88081911	.	A	.	.	LowGQX;LowMQ	END=88081917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:6:3
chr2	88081918	.	A	.	.	LowGQX;LowMQ	END=88081940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:9:3
chr2	88081941	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:252:3:3
chr2	88081942	.	C	.	.	LowGQX;LowMQ	END=88081961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:9:2
chr2	88081962	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:225:6:2
chr2	88081963	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:221:0:2
chr2	88081964	.	A	.	.	LowGQX;LowMQ	END=88082001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:6:2
chr2	88082002	.	A	.	.	LowGQX;LowMQ	END=88082035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:3:1
chr2	88082036	.	C	.	.	LowGQX;LowMQ	END=88082037	GT	./.
chr2	88082038	.	C	.	.	LowGQX;LowMQ	END=88082076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:6:2
chr2	88082077	.	A	.	.	LowGQX;LowMQ	END=88082103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:9:3
chr2	88082104	.	G	.	.	LowGQX;LowMQ	END=88082108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:12:4
chr2	88082109	.	C	.	.	LowGQX;LowMQ	END=88082110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:15:4
chr2	88082111	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:238:27:5
chr2	88082112	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:233:18:5
chr2	88082113	.	C	.	.	LowGQX;LowMQ	END=88082118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:21:5
chr2	88082119	.	G	.	.	LowMQ	END=88082121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:30:5
chr2	88082122	.	C	.	.	LowGQX;LowMQ	END=88082125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:24:6
chr2	88082126	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:221:18:6
chr2	88082127	.	C	.	.	LowGQX;LowMQ	END=88082128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:21:6
chr2	88082129	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:222:30:6
chr2	88082130	.	A	.	.	LowGQX;LowMQ	END=88082133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:24:6
chr2	88082134	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:222:15:6
chr2	88082135	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:224:27:6
chr2	88082136	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:243:33:6
chr2	88082137	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:243:27:6
chr2	88082138	.	G	.	.	LowMQ	END=88082141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:30:6
chr2	88082142	.	T	.	.	LowGQX;LowMQ	END=88082143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:245:27:6
chr2	88082144	.	T	.	.	LowMQ	END=88082145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:30:6
chr2	88082146	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:232:24:6
chr2	88082147	.	T	.	.	LowMQ	END=88082148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:33:6
chr2	88082149	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:233:24:6
chr2	88082150	.	A	.	.	LowMQ	END=88082152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:33:6
chr2	88082153	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:236:27:6
chr2	88082154	.	A	.	.	LowMQ	END=88082162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:30:6
chr2	88082163	.	C	.	.	LowGQX;LowMQ	END=88082164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:24:6
chr2	88082165	.	G	.	.	LowMQ	END=88082167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:30:6
chr2	88082168	.	C	.	.	LowGQX;LowMQ	END=88082171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:24:6
chr2	88082172	.	T	.	.	LowMQ	END=88082173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:30:6
chr2	88082174	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:230:27:6
chr2	88082175	.	T	.	.	LowMQ	END=88082177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:30:6
chr2	88082178	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:221:27:6
chr2	88082179	.	T	.	.	LowMQ	END=88082180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:30:6
chr2	88082181	.	A	.	.	LowGQX;LowMQ	END=88082183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:24:6
chr2	88082184	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:217:30:6
chr2	88082185	.	A	.	.	LowGQX;LowMQ	END=88082186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:21:6
chr2	88082187	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:217:30:6
chr2	88082188	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:220:27:6
chr2	88082189	.	T	.	.	LowMQ	END=88082191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:30:6
chr2	88082192	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:219:27:6
chr2	88082193	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:214:18:6
chr2	88082194	.	T	.	.	LowGQX;LowMQ	END=88082203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:21:6
chr2	88082204	.	C	.	.	LowMQ	END=88082205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:30:6
chr2	88082206	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:218:24:6
chr2	88082207	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:215:18:6
chr2	88082208	.	A	.	.	LowGQX;LowMQ	END=88082210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:21:6
chr2	88082211	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:204:18:6
chr2	88082212	.	T	.	.	LowMQ	END=88082215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:30:6
chr2	88082216	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:203:27:6
chr2	88082217	.	T	.	.	LowMQ	END=88082219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:30:6
chr2	88082220	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:196:27:7
chr2	88082221	.	T	.	.	LowMQ	END=88082223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:30:6
chr2	88082224	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:192:24:7
chr2	88082225	.	A	.	.	LowMQ	END=88082226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:30:7
chr2	88082227	.	C	.	.	LowGQX;LowMQ	END=88082230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:24:6
chr2	88082231	.	C	.	.	LowMQ	END=88082235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:33:6
chr2	88082236	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:216:27:6
chr2	88082237	.	A	.	.	LowMQ	END=88082240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:36:6
chr2	88082241	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:228:30:6
chr2	88082242	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:222:27:6
chr2	88082243	.	C	.	.	LowMQ	END=88082249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:30:6
chr2	88082250	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:223:42:6
chr2	88082251	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:223:27:6
chr2	88082252	.	T	.	.	LowMQ	END=88082260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:30:6
chr2	88082261	.	C	.	.	LowGQX;LowMQ	END=88082262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:21:5
chr2	88082263	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:187:30:6
chr2	88082264	.	C	.	.	LowGQX;LowMQ	END=88082265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:21:6
chr2	88082266	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:184:30:6
chr2	88082267	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:184:24:6
chr2	88082268	.	A	.	.	LowMQ	END=88082277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:36:6
chr2	88082278	.	G	.	.	LowMQ	END=88082284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:63:8
chr2	88082285	.	C	.	.	LowMQ	END=88082370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:78:9
chr2	88082371	.	C	.	.	LowMQ	END=88082383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:14
chr2	88082384	.	T	.	.	LowMQ	END=88082390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:19
chr2	88082391	.	T	.	.	PASS	END=88082443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:99:20
chr2	88082444	.	T	.	.	PASS	END=88082510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:27
chr2	88082511	.	T	.	.	PASS	END=88082541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:286:99:24
chr2	88082542	.	G	.	.	PASS	END=88082573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:344:99:20
chr2	88082574	.	A	.	.	LowMQ	END=88082612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:398:99:15
chr2	88082613	.	A	.	.	LowMQ	END=88082628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:448:99:11
chr2	88082629	.	C	.	.	LowMQ	END=88082765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:453:99:9
chr2	88082766	.	T	.	.	LowMQ	END=88082810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:338:78:8
chr2	88082811	.	A	.	.	LowMQ	END=88082830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:324:75:8
chr2	88082831	.	T	.	.	LowMQ	END=88082842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:301:45:7
chr2	88082843	.	T	.	.	LowMQ	END=88082845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:307:42:7
chr2	88082846	.	C	.	.	LowMQ	END=88082855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:311:48:6
chr2	88082856	.	T	.	.	LowMQ	END=88082857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:354:42:6
chr2	88082858	.	T	.	.	LowMQ	END=88082863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:359:45:6
chr2	88082864	.	T	.	.	LowMQ	END=88082869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:362:33:5
chr2	88082870	.	C	.	.	LowMQ	END=88082880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:371:36:5
chr2	88082881	.	G	.	.	LowMQ	END=88082893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:397:30:4
chr2	88082894	.	C	.	.	LowGQX;LowMQ	END=88082895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:407:21:4
chr2	88082896	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:400:18:4
chr2	88082897	.	A	.	.	LowGQX;LowMQ	END=88082899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:400:24:4
chr2	88082900	.	C	.	.	LowGQX;LowMQ	END=88082907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:397:18:3
chr2	88082908	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:415:15:4
chr2	88082909	.	C	.	.	LowGQX;LowMQ	END=88082916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:397:18:4
chr2	88082917	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:397:15:4
chr2	88082918	.	T	.	.	LowGQX;LowMQ	END=88082925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:381:18:4
chr2	88082926	.	G	.	.	LowGQX;LowMQ	END=88082927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:380:15:4
chr2	88082928	.	T	.	.	LowGQX;LowMQ	END=88082973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:337:18:4
chr2	88082974	.	A	.	.	LowGQX;LowMQ	END=88082975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:336:15:4
chr2	88082976	.	T	.	.	LowGQX;LowMQ	END=88082995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:329:12:3
chr2	88082996	.	G	.	.	LowGQX;LowMQ	END=88082998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:344:9:3
chr2	88082999	.	T	.	.	LowGQX;LowMQ	END=88083014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:306:3:2
chr2	88083015	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	88083016	.	T	.	.	LowGQX;LowMQ	END=88083041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:267:0:2
chr2	88083042	.	T	.	.	LowGQX;LowMQ	END=88083043	GT	./.
chr2	88083044	.	G	.	.	LowGQX;LowMQ	END=88083056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:266:3:2
chr2	88083057	.	A	.	.	LowGQX;LowMQ	END=88083342	GT	./.
chr2	88083343	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:159:3:2
chr2	88083344	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	88083345	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:159:3:2
chr2	88083346	.	A	.	.	LowGQX;LowMQ	END=88083347	GT	./.
chr2	88083348	.	C	.	.	LowGQX;LowMQ	END=88083354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:3:2
chr2	88083355	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	88083356	.	C	.	.	LowGQX;LowMQ	END=88083358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:3:2
chr2	88083359	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	88083360	.	T	.	.	LowGQX;LowMQ	END=88083364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:3:2
chr2	88083365	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	88083366	.	T	.	.	LowGQX;LowMQ	END=88083369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:3:2
chr2	88083370	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	88083371	.	T	.	.	LowGQX;LowMQ	END=88083372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:3:2
chr2	88083373	.	A	.	.	LowGQX;LowMQ	END=88083374	GT	./.
chr2	88083375	.	C	.	.	LowGQX;LowMQ	END=88083389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:3:2
chr2	88083390	.	A	.	.	LowGQX;LowMQ	END=88083392	GT	./.
chr2	88083393	.	T	.	.	LowGQX;LowMQ	END=88083398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:3:3
chr2	88083399	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	88083400	.	C	.	.	LowGQX;LowMQ	END=88083406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:3:3
chr2	88083407	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	88083408	.	T	.	.	LowGQX;LowMQ	END=88083417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:6:3
chr2	88083418	.	A	.	.	LowGQX;LowMQ	END=88083419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:3:4
chr2	88083420	.	T	.	.	LowGQX;LowMQ	END=88083421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:6:4
chr2	88083422	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:128:3:4
chr2	88083423	.	T	.	.	LowGQX;LowMQ	END=88083433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:6:4
chr2	88083434	.	G	.	.	LowGQX;LowMQ	END=88083444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:9:4
chr2	88083445	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:127:6:4
chr2	88083446	.	C	.	.	LowGQX;LowMQ	END=88083456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:9:4
chr2	88083457	.	T	.	.	LowGQX;LowMQ	END=88083463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:12:5
chr2	88083464	.	C	.	.	LowGQX;LowMQ	END=88083468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:6:5
chr2	88083469	.	C	.	.	LowGQX;LowMQ	END=88083470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:12:5
chr2	88083471	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:132:18:5
chr2	88083472	.	T	.	.	LowGQX;LowMQ	END=88083475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:9:5
chr2	88083476	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:127:18:6
chr2	88083477	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:125:12:6
chr2	88083478	.	G	.	.	LowGQX;LowMQ	END=88083479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:21:6
chr2	88083480	.	C	.	.	LowGQX;LowMQ	END=88083482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:18:6
chr2	88083483	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:150:15:6
chr2	88083484	.	C	.	.	LowGQX;LowMQ	END=88083488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:21:6
chr2	88083489	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:137:0:6
chr2	88083490	.	T	.	.	LowGQX;LowMQ	END=88083491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:21:6
chr2	88083492	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:138:15:6
chr2	88083493	.	T	.	.	LowGQX;LowMQ	END=88083495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:18:6
chr2	88083496	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:139:24:6
chr2	88083497	.	C	.	.	LowGQX;LowMQ	END=88083499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:15:6
chr2	88083500	.	T	.	.	LowGQX;LowMQ	END=88083503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:24:6
chr2	88083504	.	A	.	.	LowGQX;LowMQ	END=88083509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:18:6
chr2	88083510	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:143:6:6
chr2	88083511	.	C	.	.	LowGQX;LowMQ	END=88083513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:21:6
chr2	88083514	.	G	.	.	LowGQX;LowMQ	END=88083515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:15:6
chr2	88083516	.	A	.	.	LowGQX;LowMQ	END=88083517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:24:6
chr2	88083518	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:146:15:6
chr2	88083519	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:146:24:6
chr2	88083520	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:148:9:6
chr2	88083521	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:149:18:6
chr2	88083522	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:149:1:6
chr2	88083523	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:149:24:6
chr2	88083524	.	C	.	.	LowGQX;LowMQ	END=88083525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:12:6
chr2	88083526	.	T	.	.	LowGQX;LowMQ	END=88083527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:18:6
chr2	88083528	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:144:12:6
chr2	88083529	.	T	.	.	LowGQX;LowMQ	END=88083530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:18:6
chr2	88083531	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:141:15:6
chr2	88083532	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:141:21:6
chr2	88083533	.	C	.	.	LowGQX;LowMQ	END=88083537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:12:5
chr2	88083538	.	T	.	.	LowGQX;LowMQ	END=88083539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:21:5
chr2	88083540	.	A	.	.	LowGQX;LowMQ	END=88083542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:6:5
chr2	88083543	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:155:21:5
chr2	88083544	.	C	.	.	LowGQX;LowMQ	END=88083546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:9:5
chr2	88083547	.	T	.	.	LowGQX;LowMQ	END=88083550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:15:5
chr2	88083551	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:156:12:5
chr2	88083552	.	T	.	.	LowGQX;LowMQ	END=88083553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:18:5
chr2	88083554	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:152:9:5
chr2	88083555	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:153:18:5
chr2	88083556	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:153:6:5
chr2	88083557	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:151:12:5
chr2	88083558	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:151:21:5
chr2	88083559	.	A	.	.	LowGQX;LowMQ	END=88083560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:12:5
chr2	88083561	.	T	.	.	LowGQX;LowMQ	END=88083562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:9:5
chr2	88083563	.	T	.	.	LowGQX;LowMQ	END=88083566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:12:5
chr2	88083567	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:166:18:5
chr2	88083568	.	C	.	.	LowGQX;LowMQ	END=88083569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:12:5
chr2	88083570	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:168:0:5
chr2	88083571	.	G	.	.	LowGQX;LowMQ	END=88083572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:9:5
chr2	88083573	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:176:6:5
chr2	88083574	.	C	.	.	LowGQX;LowMQ	END=88083577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:18:5
chr2	88083578	.	A	.	.	LowGQX;LowMQ	END=88083579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:6:5
chr2	88083580	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:184:18:5
chr2	88083581	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:187:12:5
chr2	88083582	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:188:21:5
chr2	88083583	.	C	.	.	LowGQX;LowMQ	END=88083584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:12:5
chr2	88083585	.	C	.	.	LowGQX;LowMQ	END=88083587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:9:5
chr2	88083588	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:177:18:5
chr2	88083589	.	A	.	.	LowGQX;LowMQ	END=88083591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:6:5
chr2	88083592	.	T	.	.	LowGQX;LowMQ	END=88083597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:15:5
chr2	88083598	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:183:12:5
chr2	88083599	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:182:3:5
chr2	88083600	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:177:9:5
chr2	88083601	.	T	.	.	LowGQX;LowMQ	END=88083602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:15:5
chr2	88083603	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:179:12:5
chr2	88083604	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:179:18:5
chr2	88083605	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:179:9:4
chr2	88083606	.	G	.	.	LowGQX;LowMQ	END=88083607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:0:4
chr2	88083608	.	C	.	.	LowGQX;LowMQ	END=88083611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:6:4
chr2	88083612	.	C	.	.	LowGQX;LowMQ	END=88083613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:12:5
chr2	88083614	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:182:18:5
chr2	88083615	.	A	.	.	LowGQX;LowMQ	END=88083617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:9:5
chr2	88083618	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:182:18:5
chr2	88083619	.	C	.	.	LowGQX;LowMQ	END=88083622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:9:4
chr2	88083623	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:164:6:4
chr2	88083624	.	T	.	.	LowGQX;LowMQ	END=88083635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:9:4
chr2	88083636	.	T	.	.	LowGQX;LowMQ	END=88083642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:15:5
chr2	88083643	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:135:12:5
chr2	88083644	.	C	.	.	LowGQX;LowMQ	END=88083651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:15:5
chr2	88083652	.	A	.	.	LowGQX;LowMQ	END=88083653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:12:5
chr2	88083654	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:129:0:6
chr2	88083655	.	G	.	.	LowGQX;LowMQ	END=88083658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:18:6
chr2	88083659	.	A	.	.	LowGQX;LowMQ	END=88083664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:21:6
chr2	88083665	.	T	.	.	LowMQ	END=88083666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:33:7
chr2	88083667	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:138:24:7
chr2	88083668	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:138:33:7
chr2	88083669	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:138:27:7
chr2	88083670	.	G	.	.	LowMQ	END=88083675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:30:7
chr2	88083676	.	C	.	.	LowGQX;LowMQ	END=88083678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:27:7
chr2	88083679	.	A	.	.	LowMQ	END=88083680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:33:7
chr2	88083681	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:139:24:8
chr2	88083682	.	A	.	.	LowMQ	END=88083684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:30:8
chr2	88083685	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:138:15:8
chr2	88083686	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:135:36:8
chr2	88083687	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:135:27:8
chr2	88083688	.	C	.	.	LowMQ	END=88083698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:33:8
chr2	88083699	.	C	.	.	LowMQ	END=88083708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:48:9
chr2	88083709	.	C	.	.	LowMQ	END=88083733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:63:11
chr2	88083734	.	T	.	.	LowMQ	END=88083783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:78:12
chr2	88083784	.	G	A	125.82	LowMQ;LowQD;SB	BaseQRankSum=-1.078;DP=129;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.9469;MQ=12;MQ0=99;MQRankSum=-1.078;QD=0.98;ReadPosRankSum=-1.782;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:87,41:129:99:156,0,481:12:99:0.320
chr2	88083785	.	A	.	.	LowMQ	END=88083815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:72:11
chr2	88083816	.	A	.	.	LowMQ	END=88083842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:63:12
chr2	88083843	.	C	.	.	LowMQ	END=88083848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:54:12
chr2	88083849	.	T	C	92.54	LowMQ;LowQD;SB	BaseQRankSum=1.113;DP=99;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=11;MQ0=79;MQRankSum=0.124;QD=0.93;ReadPosRankSum=-0.289;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:44,55:99:99:123,0,332:11:93:0.556
chr2	88083850	.	T	.	.	LowMQ	END=88083858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:42:10
chr2	88083859	.	G	.	.	LowMQ	END=88083860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:30:9
chr2	88083861	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:85:27:9
chr2	88083862	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:76:30:9
chr2	88083863	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:75:27:9
chr2	88083864	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:75:18:9
chr2	88083865	.	C	.	.	LowMQ	END=88083868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:30:9
chr2	88084531	.	G	.	.	LowMQ	END=88084536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:42:7
chr2	88084537	.	A	.	.	LowMQ	END=88084539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:54:8
chr2	88084540	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:196:34:8
chr2	88084541	.	T	.	.	LowMQ	END=88084544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:60:8
chr2	88084545	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:192:34:8
chr2	88084546	.	A	.	.	LowMQ	END=88084550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:51:8
chr2	88084551	.	A	.	.	LowMQ	END=88084553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:42:8
chr2	88084554	.	A	.	.	LowMQ	END=88084561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:51:8
chr2	88084562	.	A	.	.	LowMQ	END=88084563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:42:8
chr2	88084564	.	T	.	.	LowMQ	END=88084565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:48:8
chr2	88084566	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:184:42:8
chr2	88084567	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:184:57:8
chr2	88084568	.	A	.	.	LowMQ	END=88084570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:42:8
chr2	88084571	.	T	.	.	LowMQ	END=88084587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:51:8
chr2	88084588	.	T	.	.	LowMQ	END=88084595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:57:10
chr2	88084596	.	T	.	.	LowMQ	END=88084597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:75:10
chr2	88084598	.	G	.	.	LowMQ	END=88084605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:54:11
chr2	88084606	.	A	.	.	LowMQ	END=88084608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:75:12
chr2	88084609	.	A	.	.	LowMQ	END=88084612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:81:13
chr2	88084613	.	G	.	.	LowMQ	END=88084615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:69:13
chr2	88084616	.	G	.	.	LowMQ	END=88084617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:72:13
chr2	88084618	.	T	.	.	LowMQ	END=88084619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:63:13
chr2	88084620	.	G	.	.	LowMQ	END=88084624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:72:13
chr2	88084625	.	A	.	.	LowMQ	END=88084626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:63:13
chr2	88084627	.	A	.	.	LowMQ	END=88084628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:87:13
chr2	88084629	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:199:57:14
chr2	88084630	.	A	.	.	LowMQ	END=88084634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:75:14
chr2	88084635	.	G	.	.	LowMQ	END=88084637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:69:14
chr2	88084638	.	A	.	.	LowMQ	END=88084647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:81:14
chr2	88084648	.	T	.	.	LowMQ	END=88084655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:72:15
chr2	88084656	.	G	.	.	LowMQ	END=88084659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:66:15
chr2	88084660	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:168:96:15
chr2	88084661	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:166:37:15
chr2	88084662	.	A	.	.	LowMQ	END=88084663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:15
chr2	88084664	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:165:60:15
chr2	88084665	.	A	.	.	LowMQ	END=88084666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:69:16
chr2	88084667	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:123:90:18
chr2	88084668	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:123:43:18
chr2	88084669	.	T	.	.	LowMQ	END=88084670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:54:19
chr2	88084671	.	A	.	.	LowMQ	END=88084672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:72:19
chr2	88084673	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:109:57:19
chr2	88084674	.	G	.	.	PASS	END=88084677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:20
chr2	88084678	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:99:69:20
chr2	88084679	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:99:51:20
chr2	88084680	.	T	.	.	PASS	END=88084681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:78:20
chr2	88084682	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:101:48:20
chr2	88084683	.	T	.	.	PASS	END=88084684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:20
chr2	88084685	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:97:60:20
chr2	88084686	.	C	.	.	PASS	END=88084688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:84:20
chr2	88084689	.	C	.	.	PASS	END=88084690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:42:21
chr2	88084691	.	A	.	135.17	PASS	DP=83;MQ=21;MQ0=25	GT:AD:DP:GQ:MQ:GQX	0/0:66:73:99:21:99
chr2	88088198	.	A	.	.	LowGQX;LowMQ	END=88088360	GT	./.
chr2	88091446	.	A	.	.	LowGQX;LowMQ	END=88091600	GT	./.
chr2	88091668	.	C	.	.	LowGQX;LowMQ	END=88091860	GT	./.
chr2	88092709	.	T	.	.	LowGQX;LowMQ	END=88092887	GT	./.
chr2	88093149	.	C	.	.	LowGQX;LowMQ	END=88093327	GT	./.
chr2	88093553	.	C	.	.	LowGQX;LowMQ	END=88093751	GT	./.
chr2	88094635	.	C	.	.	LowGQX;LowMQ	END=88094803	GT	./.
chr2	88094915	.	T	.	.	LowGQX;LowMQ	END=88095102	GT	./.
chr2	88095174	.	A	.	.	LowGQX;LowMQ	END=88095384	GT	./.
chr2	88097412	.	C	.	.	LowGQX;LowMQ	END=88097761	GT	./.
chr2	88100062	.	G	.	.	LowGQX;LowMQ	END=88100217	GT	./.
chr2	88106203	.	T	.	.	LowGQX;LowMQ	END=88106410	GT	./.
chr2	88111003	.	C	.	.	LowGQX;LowMQ	END=88111181	GT	./.
chr2	88111423	.	G	.	.	LowGQX;LowMQ	END=88111792	GT	./.
chr2	88115787	.	C	.	.	LowGQX;LowMQ	END=88115975	GT	./.
chr2	88116384	.	C	.	.	LowGQX;LowMQ	END=88116542	GT	./.
chr2	88118060	.	G	.	.	PASS	END=88118104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:21
chr2	88118105	.	T	.	.	PASS	END=88118159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:29
chr2	88125106	.	C	.	.	LowGQX	END=88125120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:47
chr2	88125121	.	G	.	.	PASS	END=88125127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:51
chr2	88125128	.	C	.	.	PASS	END=88125141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:51
chr2	88125142	.	G	.	.	PASS	END=88125159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:49
chr2	88125160	.	C	.	.	PASS	END=88125179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:48
chr2	88125180	.	T	.	.	PASS	END=88125197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:48
chr2	88125198	.	G	.	.	PASS	END=88125223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:46
chr2	88125224	.	C	.	.	PASS	END=88125262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:42
chr2	88285220	.	T	.	.	PASS	END=88285259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:43
chr2	88285260	.	C	.	.	PASS	END=88285319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:43
chr2	88327301	.	C	.	.	LowGQX	END=88327501	GT	./.
chr2	88327502	.	C	.	.	LowGQX	END=88327532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88327533	.	A	.	.	LowGQX	.	GT	./.
chr2	88327534	.	G	.	.	LowGQX	END=88327535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88327536	.	T	.	.	LowGQX	.	GT	./.
chr2	88327537	.	T	.	.	LowGQX	END=88327543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88327544	.	C	.	.	LowGQX	.	GT	./.
chr2	88327545	.	T	.	.	LowGQX	END=88327556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88327557	.	A	.	.	LowGQX	.	GT	./.
chr2	88327558	.	C	.	.	LowGQX	END=88327566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88327567	.	C	.	.	LowGQX	END=88327568	GT	./.
chr2	88327569	.	C	.	.	LowGQX	END=88327589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88327590	.	C	.	.	LowGQX	END=88327591	GT	./.
chr2	88327592	.	G	.	.	LowGQX	END=88327596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88327597	.	C	.	.	LowGQX	END=88327598	GT	./.
chr2	88327599	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88327600	.	T	.	.	LowGQX	.	GT	./.
chr2	88327601	.	T	.	.	LowGQX	END=88327608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88327609	.	C	.	.	LowGQX	.	GT	./.
chr2	88327610	.	T	.	.	LowGQX	END=88327626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88327627	.	A	.	.	LowGQX	.	GT	./.
chr2	88327628	.	C	.	.	LowGQX	END=88327638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88327639	.	A	.	.	LowGQX	.	GT	./.
chr2	88327640	.	G	.	.	LowGQX	END=88327642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88327643	.	C	.	.	LowGQX	.	GT	./.
chr2	88327644	.	T	.	.	LowGQX	END=88327647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88327648	.	A	.	.	LowGQX	END=88327682	GT	./.
chr2	88327683	.	G	.	.	LowGQX	END=88327883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88327884	.	T	.	.	LowGQX	.	GT	./.
chr2	88327885	.	T	.	.	LowGQX	END=88327918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88327919	.	G	.	.	LowGQX	END=88328084	GT	./.
chr2	88367382	.	A	.	.	LowGQX	END=88367408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88367409	.	T	.	.	LowGQX	.	GT	./.
chr2	88367410	.	G	.	.	LowGQX	END=88367412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88367413	.	G	.	.	LowGQX	.	GT	./.
chr2	88367414	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88367415	.	T	.	.	LowGQX	.	GT	./.
chr2	88367416	.	C	.	.	LowGQX	END=88367421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88367422	.	C	.	.	LowGQX	END=88367465	GT	./.
chr2	88367466	.	G	.	.	LowGQX	END=88367497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88367498	.	T	.	.	LowGQX	.	GT	./.
chr2	88367499	.	A	.	.	LowGQX	END=88367522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88383833	.	A	.	.	LowGQX	.	GT	./.
chr2	88383834	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88383835	.	C	.	.	LowGQX	.	GT	./.
chr2	88383836	.	C	.	.	LowGQX	END=88383843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88383844	.	T	.	.	LowGQX	END=88383845	GT	./.
chr2	88383846	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88383847	.	T	.	.	LowGQX	.	GT	./.
chr2	88383848	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88383849	.	T	.	.	LowGQX	.	GT	./.
chr2	88383850	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88383851	.	T	.	.	LowGQX	.	GT	./.
chr2	88383852	.	G	.	.	LowGQX	END=88383854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88383855	.	A	.	.	LowGQX	.	GT	./.
chr2	88383856	.	C	.	.	LowGQX	END=88383858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88383859	.	C	.	.	LowGQX	.	GT	./.
chr2	88383860	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88383861	.	G	.	.	LowGQX	END=88383863	GT	./.
chr2	88383864	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88383865	.	C	.	.	LowGQX	.	GT	./.
chr2	88383866	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88383867	.	A	.	.	LowGQX	.	GT	./.
chr2	88383868	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88383869	.	A	.	.	LowGQX	.	GT	./.
chr2	88383870	.	G	.	.	LowGQX	END=88383878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88383879	.	A	.	.	LowGQX	.	GT	./.
chr2	88383880	.	G	.	.	LowGQX	END=88383881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88383882	.	T	.	.	LowGQX	.	GT	./.
chr2	88383883	.	C	.	.	LowGQX	END=88383896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88383897	.	A	.	.	LowGQX	END=88384013	GT	./.
chr2	88387379	.	A	.	.	LowGQX	END=88387596	GT	./.
chr2	88390529	.	A	.	.	LowGQX	END=88390603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88390604	.	T	.	.	LowGQX	END=88390663	GT	./.
chr2	88393006	.	T	.	.	LowGQX	END=88393105	GT	./.
chr2	88396112	.	A	.	.	LowGQX	END=88396305	GT	./.
chr2	88402574	.	C	.	.	LowGQX	END=88402631	GT	./.
chr2	88402632	.	A	.	.	LowGQX	END=88402656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88402657	.	T	.	.	LowGQX	.	GT	./.
chr2	88402658	.	T	.	.	LowGQX	END=88402671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88402672	.	A	.	.	LowGQX	.	GT	./.
chr2	88402673	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88405842	.	A	.	.	LowGQX	END=88406009	GT	./.
chr2	88407888	.	A	.	.	LowGQX	END=88408060	GT	./.
chr2	88409871	.	A	.	.	LowGQX	END=88410033	GT	./.
chr2	88411580	.	C	.	.	LowGQX	END=88411679	GT	./.
chr2	88422549	.	A	.	.	PASS	END=88422593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr2	88422594	.	C	.	.	PASS	END=88422616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr2	88422617	.	T	.	.	PASS	END=88422624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr2	88422625	.	T	.	.	PASS	END=88422644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	88422645	.	A	.	.	PASS	END=88422648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr2	88423970	.	C	.	.	PASS	END=88423995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	88423996	.	G	.	.	PASS	END=88424065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	88424066	.	T	C	1761.13	PASS	BaseQRankSum=-0.578;DP=159;Dels=0.00;FS=2.979;HRun=0;HaplotypeScore=9.5219;MQ=60;MQ0=0;MQRankSum=0.991;QD=11.08;ReadPosRankSum=0.236;SB=-955.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:76,83:159:99:1791,0,1752:60:99:0.522
chr2	88424067	.	T	.	.	PASS	END=88424095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	88424096	.	G	.	.	PASS	END=88424117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	88424118	.	G	.	.	PASS	END=88424138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	88424139	.	G	.	.	PASS	END=88424149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	88425693	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:66:60
chr2	88425694	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:24:60
chr2	88425695	.	C	.	.	PASS	END=88425710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:57:60
chr2	88425711	.	G	.	.	PASS	END=88425770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr2	88425771	.	C	.	.	PASS	END=88425783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr2	88425784	.	T	.	.	PASS	END=88425807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:45:60
chr2	88425808	.	G	.	.	PASS	END=88425820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr2	88425821	.	C	.	.	PASS	END=88425822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:36:60
chr2	88425823	.	C	.	.	PASS	END=88425835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr2	88425836	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:36:60
chr2	88425837	.	T	.	.	PASS	END=88425869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:39:60
chr2	88427454	.	T	.	.	LowGQX	END=88427553	GT	./.
chr2	88470775	.	C	.	.	LowGQX	END=88470874	GT	./.
chr2	88472668	.	T	.	.	LowGQX	END=88472669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88472670	.	A	.	.	LowGQX	.	GT	./.
chr2	88472671	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88472672	.	G	.	.	LowGQX	.	GT	./.
chr2	88472673	.	T	.	.	LowGQX	END=88472680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88472681	.	C	.	.	LowGQX	END=88472688	GT	./.
chr2	88472689	.	G	.	.	LowGQX	END=88472693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88472694	.	G	.	.	LowGQX	.	GT	./.
chr2	88472695	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88472696	.	A	.	.	LowGQX	.	GT	./.
chr2	88472697	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88472698	.	C	.	.	LowGQX	END=88472701	GT	./.
chr2	88472702	.	A	.	.	LowGQX	END=88472703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88472704	.	G	.	.	LowGQX	.	GT	./.
chr2	88472705	.	G	.	.	LowGQX	END=88472710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88472711	.	C	.	.	LowGQX	.	GT	./.
chr2	88472712	.	T	.	.	LowGQX	END=88472713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88472714	.	T	.	.	LowGQX	.	GT	./.
chr2	88472715	.	G	.	.	LowGQX	END=88472718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88472719	.	G	.	.	LowGQX	.	GT	./.
chr2	88472720	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	88472721	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88472722	.	C	.	.	LowGQX	END=88472724	GT	./.
chr2	88472725	.	T	.	.	LowGQX	END=88472728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88472729	.	C	.	.	LowGQX	.	GT	./.
chr2	88472730	.	T	.	.	LowGQX	END=88472738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88472739	.	G	.	.	LowGQX	END=88472740	GT	./.
chr2	88472741	.	A	.	.	LowGQX	END=88472750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88472751	.	G	.	.	LowGQX	END=88472894	GT	./.
chr2	88474156	.	A	.	.	LowGQX	END=88474354	GT	./.
chr2	88474766	.	A	.	.	LowGQX	END=88474931	GT	./.
chr2	88478300	.	A	.	.	LowGQX	END=88478306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	88478307	.	G	.	.	LowGQX	.	GT	./.
chr2	88478308	.	G	.	.	LowGQX	END=88478351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	88478352	.	G	.	.	LowGQX	.	GT	./.
chr2	88478353	.	A	.	.	LowGQX	END=88478374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	88478375	.	C	.	.	LowGQX	.	GT	./.
chr2	88478376	.	A	.	.	LowGQX	END=88478387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	88478388	.	C	.	.	LowGQX	.	GT	./.
chr2	88478389	.	T	.	.	LowGQX	END=88478392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	88478393	.	T	.	.	LowGQX	.	GT	./.
chr2	88478394	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	88478395	.	C	.	.	LowGQX	END=88478534	GT	./.
chr2	88482216	.	A	.	.	LowGQX	END=88482368	GT	./.
chr2	88482465	.	A	.	.	LowGQX	END=88482594	GT	./.
chr2	88484845	.	A	.	.	LowGQX	END=88485000	GT	./.
chr2	88485069	.	G	.	.	LowGQX	END=88485203	GT	./.
chr2	88485204	.	T	.	.	LowGQX	END=88485210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88485415	.	A	.	.	LowGQX	END=88485419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	88485420	.	T	.	.	LowGQX	END=88485644	GT	./.
chr2	88747725	.	T	.	.	LowGQX	END=88748348	GT	./.
chr2	88751404	.	G	.	.	LowGQX	END=88752062	GT	./.
chr2	88825127	.	G	.	.	LowGQX	END=88825147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	88825148	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	88825149	.	C	.	.	LowGQX	END=88825154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	88825155	.	C	.	32.98	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3:60:3
chr2	88825156	.	G	.	.	LowGQX	END=88825190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	88825191	.	T	.	.	LowGQX	.	GT	./.
chr2	88825192	.	G	.	.	LowGQX	END=88825199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	88825200	.	T	.	.	LowGQX	.	GT	./.
chr2	88825201	.	G	.	.	LowGQX	END=88825209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	88825210	.	T	.	.	LowGQX	.	GT	./.
chr2	88825211	.	C	.	.	LowGQX	END=88825225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	88825226	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	88825920	.	T	.	.	LowGQX	END=88826019	GT	./.
chr2	88828568	.	A	.	.	LowGQX	END=88828994	GT	./.
chr2	88857203	.	A	.	.	PASS	END=88857213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:60
chr2	88857214	.	T	.	.	PASS	END=88857219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:48:60
chr2	88857220	.	C	.	.	PASS	END=88857224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	88857225	.	C	.	.	PASS	END=88857245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr2	88857246	.	A	.	.	PASS	END=88857266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr2	88857267	.	A	.	.	PASS	END=88857281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	88857282	.	T	.	.	PASS	END=88857298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	88857299	.	A	.	.	PASS	END=88857359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	88857360	.	A	.	.	PASS	END=88857403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	88857404	.	T	.	.	PASS	END=88857431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	88857432	.	A	.	.	PASS	END=88857445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	88857446	.	C	.	.	PASS	END=88857500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	88857501	.	A	.	.	PASS	END=88857505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	88858384	.	T	.	.	PASS	END=88858426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr2	88858427	.	A	.	.	PASS	END=88858443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	88858444	.	A	.	.	PASS	END=88858548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	88861756	.	T	.	.	PASS	END=88861794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:69:60
chr2	88861795	.	G	.	.	PASS	END=88861796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:63:60
chr2	88861797	.	G	.	.	PASS	END=88861803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr2	88861804	.	T	.	.	PASS	END=88861807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	88861808	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:69:60
chr2	88861809	.	T	.	.	PASS	END=88861830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	88861831	.	G	.	.	PASS	END=88861954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	88861955	.	A	.	.	PASS	END=88861959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	88870341	.	C	.	.	LowGQX	END=88870349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	88870350	.	C	.	.	PASS	END=88870361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr2	88870362	.	T	.	.	PASS	END=88870389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	88870390	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr2	88870391	.	C	.	.	PASS	END=88870393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	88870394	.	G	.	.	PASS	END=88870400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	88870401	.	G	.	.	PASS	END=88870411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr2	88870412	.	G	.	.	PASS	END=88870420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	88870421	.	C	.	.	PASS	END=88870429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr2	88870430	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:57:60
chr2	88870431	.	T	.	.	PASS	END=88870457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:90:60
chr2	88870458	.	G	.	.	PASS	END=88870548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:90:60
chr2	88870549	.	A	.	.	PASS	END=88870556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	88870557	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:75:60
chr2	88870558	.	G	.	.	PASS	END=88870575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr2	88870576	.	A	.	.	PASS	END=88870602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr2	88870603	.	A	.	.	PASS	END=88870608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr2	88870609	.	A	.	.	PASS	END=88870610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:60
chr2	88874133	.	T	.	.	LowGQX	END=88874135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr2	88874136	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:0:60
chr2	88874137	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr2	88874138	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr2	88874139	.	A	.	.	LowGQX	END=88874140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	88874141	.	C	.	.	LowGQX	END=88874160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	88874161	.	G	.	.	PASS	END=88874162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	88874163	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	88874164	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	88874165	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr2	88874166	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	88874167	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	88874168	.	C	.	.	LowGQX	END=88874170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr2	88874171	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr2	88874172	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr2	88874173	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	88874174	.	A	.	.	LowGQX	END=88874176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:24:60
chr2	88874177	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr2	88874178	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr2	88874179	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:36:60
chr2	88874180	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr2	88874181	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:36:60
chr2	88874182	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:18:60
chr2	88874183	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	88874184	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:7:60
chr2	88874185	.	T	.	.	PASS	END=88874190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr2	88874191	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:22:60
chr2	88874192	.	C	.	.	PASS	END=88874195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	88874196	.	G	.	.	PASS	END=88874203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr2	88874204	.	G	.	.	PASS	END=88874224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	88874225	.	C	.	.	PASS	END=88874226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr2	88874227	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:39:60
chr2	88874228	.	C	.	.	PASS	END=88874242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr2	88874243	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:69:60
chr2	88874244	.	C	.	.	PASS	END=88874271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr2	88874272	.	T	.	.	PASS	END=88874283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:93:60
chr2	88874284	.	A	.	.	PASS	END=88874338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	88874339	.	T	.	.	PASS	END=88874443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	88874444	.	A	.	.	PASS	END=88874469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	88874470	.	C	.	.	PASS	END=88874530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	88874531	.	T	.	.	PASS	END=88874621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr2	88874622	.	A	.	.	PASS	END=88874680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	88874681	.	C	.	.	PASS	END=88874739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	88874740	.	G	.	.	PASS	END=88874786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr2	88874787	.	G	.	.	PASS	END=88874815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:60
chr2	88874816	.	C	.	.	PASS	END=88874890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:279:99:60
chr2	88874891	.	C	A	3794.82	PASS	BaseQRankSum=5.584;DP=273;Dels=0.00;FS=7.408;HRun=0;HaplotypeScore=22.9263;MQ=60;MQ0=0;MQRankSum=-0.104;QD=13.90;ReadPosRankSum=0.268;SB=-1884.74	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:120,153:273:99:3795,0,2747:60:99:0.560
chr2	88874892	.	G	.	.	PASS	END=88874943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:60
chr2	88874944	.	G	.	.	PASS	END=88874954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr2	88874955	.	C	.	.	PASS	END=88874971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	88874972	.	T	.	.	PASS	END=88875007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	88875008	.	T	.	.	PASS	END=88875015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	88876021	.	A	.	.	PASS	END=88876022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	88876023	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:52:70:60
chr2	88876024	.	A	.	.	PASS	END=88876041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:60
chr2	88876042	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:60:69:60
chr2	88876043	.	T	.	.	PASS	END=88876050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	88876051	.	A	.	.	PASS	END=88876070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	88876071	.	C	.	.	PASS	END=88876137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	88876138	.	G	.	.	PASS	END=88876204;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	88876205	.	T	.	.	PASS	END=88876262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	88878985	.	A	.	.	PASS	END=88878987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	88878988	.	A	.	.	PASS	END=88879001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	88879002	.	T	.	.	PASS	END=88879022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr2	88879023	.	T	.	.	PASS	END=88879024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr2	88879025	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:57:60
chr2	88879026	.	C	.	.	PASS	END=88879053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:77:60
chr2	88879054	.	C	.	.	PASS	END=88879130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	88879131	.	T	C	514.62	PASS	BaseQRankSum=-1.197;DP=48;Dels=0.00;FS=1.079;HRun=0;HaplotypeScore=5.6815;MQ=60;MQ0=0;MQRankSum=1.940;QD=10.72;ReadPosRankSum=-1.259;SB=-364.97	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:23,25:48:99:545,0,685:60:99:0.521
chr2	88879132	.	T	.	.	PASS	END=88879160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:78:60
chr2	88879161	.	T	.	.	PASS	END=88879193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	88879194	.	C	.	.	PASS	END=88879209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr2	88882897	.	T	.	.	PASS	END=88882946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	88882947	.	C	.	.	PASS	END=88883012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	88883013	.	A	.	.	PASS	END=88883075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	88883076	.	A	.	.	PASS	END=88883094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	88883095	.	A	.	.	PASS	END=88883109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	88883110	.	T	.	.	PASS	END=88883111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	88885308	.	A	.	.	PASS	END=88885324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	88885325	.	T	.	.	PASS	END=88885328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr2	88885329	.	A	.	.	PASS	END=88885331;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr2	88885332	.	C	.	.	PASS	END=88885342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr2	88885343	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:48:60
chr2	88885344	.	A	.	.	PASS	END=88885351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr2	88885352	.	T	.	.	PASS	END=88885373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	88885374	.	A	.	.	PASS	END=88885406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	88885407	.	T	.	.	PASS	END=88885522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	88885523	.	T	.	.	PASS	END=88885547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	88885548	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:75:60
chr2	88885549	.	C	.	.	PASS	END=88885560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	88885561	.	G	.	.	PASS	END=88885574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	88885575	.	A	.	.	PASS	END=88885591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	88885592	.	A	.	.	PASS	END=88885602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	88885603	.	T	.	.	PASS	END=88885604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr2	88885605	.	T	.	.	PASS	END=88885624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	88885625	.	A	.	.	PASS	END=88885630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:42:60
chr2	88887449	.	T	.	.	PASS	END=88887531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr2	88887532	.	T	.	.	PASS	END=88887652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr2	88887653	.	A	.	.	PASS	END=88887673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	88888228	.	A	.	.	PASS	END=88888241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr2	88888242	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:72:60
chr2	88888243	.	A	.	.	PASS	END=88888252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr2	88888253	.	T	.	.	PASS	END=88888266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	88888267	.	C	.	.	PASS	END=88888298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	88888299	.	A	.	.	PASS	END=88888400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	88888401	.	A	.	.	PASS	END=88888415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	88888416	.	A	.	.	PASS	END=88888425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr2	88888426	.	C	.	.	PASS	END=88888468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr2	88888469	.	T	.	.	PASS	END=88888470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	88889910	.	A	.	.	PASS	END=88889928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr2	88889929	.	G	.	.	PASS	END=88889959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr2	88889960	.	C	.	.	PASS	END=88890077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	88890078	.	C	.	.	PASS	END=88890126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:60
chr2	88890127	.	A	.	.	PASS	END=88890166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	88890167	.	G	.	.	PASS	END=88890174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	88890285	.	C	.	.	PASS	END=88890325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	88890326	.	T	.	.	PASS	END=88890332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	88890333	.	T	.	.	PASS	END=88890357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	88890358	.	C	.	.	PASS	END=88890402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	88890403	.	A	.	.	PASS	END=88890511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	88890512	.	C	.	.	PASS	END=88890538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	88890539	.	G	.	.	PASS	END=88890617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	88890618	.	G	.	.	PASS	END=88890621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	88892739	.	A	.	.	PASS	END=88892759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr2	88892760	.	T	.	.	PASS	END=88892798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	88892799	.	C	.	.	PASS	END=88892834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	88892835	.	G	.	.	PASS	END=88892920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	88892921	.	C	.	.	PASS	END=88892974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	88894936	.	T	.	.	PASS	END=88894993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	88894994	.	C	.	.	PASS	END=88895086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr2	88895087	.	A	.	.	PASS	END=88895122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr2	88895123	.	T	C	2568.91	PASS	BaseQRankSum=-3.720;DP=230;Dels=0.00;FS=4.715;HRun=0;HaplotypeScore=12.3524;MQ=60;MQ0=0;MQRankSum=-0.961;QD=11.17;ReadPosRankSum=0.007;SB=-1441.90	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:126,104:230:99:2599,0,3785:60:99:0.452
chr2	88895124	.	G	.	.	PASS	END=88895157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:99:60
chr2	88895158	.	A	.	.	PASS	END=88895232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	88895257	.	G	.	.	PASS	END=88895301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	88895302	.	T	.	.	PASS	END=88895318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	88895319	.	T	.	.	PASS	END=88895343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	88895344	.	G	.	.	PASS	END=88895350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	88895351	.	T	C	911.56	SB	BaseQRankSum=2.348;DP=79;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=5.7865;MQ=60;MQ0=0;MQRankSum=0.878;QD=11.54;ReadPosRankSum=0.735;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:47,31:79:99:942,0,1229:60:99:0.397
chr2	88895352	.	G	.	.	PASS	END=88895356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	88913191	.	T	.	.	PASS	END=88913201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr2	88913202	.	A	.	.	PASS	END=88913241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr2	88913242	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:61:60
chr2	88913243	.	T	.	.	PASS	END=88913267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	88913268	.	C	.	.	PASS	END=88913272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:94:60
chr2	88913273	.	G	C	1006.92	PASS	BaseQRankSum=-0.463;DP=72;Dels=0.00;FS=3.457;HRun=0;HaplotypeScore=5.7870;MQ=60;MQ0=0;MQRankSum=-0.428;QD=13.98;ReadPosRankSum=-0.805;SB=-561.85	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:30,42:72:99:1037,0,727:60:99:0.583
chr2	88913274	.	A	.	.	PASS	END=88913400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	88913401	.	A	.	.	PASS	END=88913418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	88913419	.	T	.	.	PASS	END=88913422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr2	88926434	.	G	.	.	PASS	END=88926488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	88926489	.	C	.	.	PASS	END=88926564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	88926565	.	C	.	.	PASS	END=88926582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	88926583	.	C	.	.	PASS	END=88926632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	88926633	.	T	.	.	PASS	END=88926639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	88926640	.	A	.	.	PASS	END=88926652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:60
chr2	88926653	.	A	.	.	PASS	END=88926663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:60
chr2	88926664	.	C	.	.	PASS	END=88926688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	88926689	.	C	.	.	PASS	END=88926700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr2	88926701	.	C	.	.	PASS	END=88926705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr2	88926706	.	G	.	.	PASS	END=88926714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:42:60
chr2	88926715	.	C	.	.	PASS	END=88926729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:54:60
chr2	88926729	.	CCAG	C	1408.68	PASS	DP=29;FS=0.000;HRun=0;HaplotypeScore=54.2747;MQ=60;MQ0=0;QD=48.58;SB=-414.71	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,28:29:84.29:1451,84,0:60:84:0.966
chr2	88926730	.	C	.	.	LowGQX	DP=29;MQ=60;MQ0=0	GT:AD:DP:MQ	.:1:1:60
chr2	88926731	.	A	.	.	LowGQX	DP=29;MQ=60;MQ0=0	GT:AD:DP:MQ	.:1:1:60
chr2	88926732	.	G	.	.	LowGQX	DP=29;MQ=60;MQ0=0	GT:AD:DP:MQ	.:1:1:60
chr2	88926733	.	C	.	.	PASS	END=88926766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:51:60
chr2	88926767	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:48:60
chr2	88926768	.	G	.	.	PASS	END=88926774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr2	88926775	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:34:24:60
chr2	88926776	.	C	.	.	PASS	END=88926786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:57:60
chr2	88926787	.	C	.	.	PASS	END=88926843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr2	88991106	.	A	.	.	LowGQX	END=88991107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	88991108	.	T	.	.	PASS	END=88991109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	88991110	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	88991111	.	C	.	.	PASS	END=88991114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	88991115	.	C	.	.	LowGQX	END=88991116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr2	88991117	.	A	.	.	PASS	END=88991118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	88991119	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	88991120	.	C	.	.	PASS	END=88991123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	88991124	.	C	.	.	LowGQX	END=88991125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr2	88991126	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	88991127	.	A	.	.	LowGQX	END=88991128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr2	88991129	.	C	.	.	PASS	END=88991131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	88991132	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:21:60
chr2	88991133	.	G	.	.	PASS	END=88991143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:39:60
chr2	88991144	.	G	.	.	PASS	END=88991156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:60:60
chr2	88991157	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:42:60
chr2	88991158	.	C	.	.	PASS	END=88991181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:60
chr2	88991182	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:33:60
chr2	88991183	.	G	.	.	PASS	END=88991185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:69:60
chr2	88991186	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:51:60
chr2	88991187	.	C	.	.	PASS	END=88991209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr2	88991210	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:42:60
chr2	88991211	.	G	.	.	PASS	END=88991223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:81:60
chr2	88991224	.	G	.	.	PASS	END=88991235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr2	88991236	.	T	.	.	PASS	END=88991243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	88991244	.	C	.	.	PASS	END=88991269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	88991270	.	G	.	.	PASS	END=88991316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	88991317	.	G	.	.	PASS	END=88991349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	88991350	.	G	.	.	PASS	END=88991500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr2	88991501	.	G	.	.	PASS	END=88991543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	88991544	.	C	.	.	PASS	END=88991552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	88997951	.	G	.	.	PASS	END=88998038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	88998039	.	T	.	.	PASS	END=88998063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	88998064	.	T	.	.	PASS	END=88998086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	88998087	.	A	.	.	PASS	END=88998113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	88999465	.	T	.	.	PASS	END=88999475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	88999476	.	G	A	3233.06	PASS	DP=111;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=6.6284;MQ=60;MQ0=0;QD=29.13;SB=-1621.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,111:111:99:3267,244,0:60:99:1.000
chr2	88999477	.	A	.	.	PASS	END=88999549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	88999550	.	C	.	.	PASS	END=88999581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	88999582	.	G	.	.	PASS	END=88999598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	88999599	.	A	.	.	PASS	END=88999631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr2	88999632	.	G	.	.	PASS	END=88999633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	89028745	.	T	.	.	PASS	END=89028747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:60
chr2	89028748	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:41:12:60
chr2	89028749	.	A	.	.	PASS	END=89028767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr2	89028768	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:49:60
chr2	89028769	.	G	.	.	PASS	END=89028779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr2	89028780	.	T	.	.	PASS	END=89028810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:97:60
chr2	89028811	.	C	.	.	PASS	END=89028839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	89028840	.	G	.	.	PASS	END=89028906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	89034018	.	C	.	.	PASS	END=89034057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	89034058	.	C	.	.	PASS	END=89034145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	89034146	.	G	.	.	PASS	END=89034173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr2	89034174	.	A	.	.	PASS	END=89034184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:59
chr2	89035135	.	C	.	.	PASS	END=89035152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr2	89035153	.	T	.	.	PASS	END=89035193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	89035194	.	T	.	.	PASS	END=89035201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:66:60
chr2	89035202	.	G	.	.	PASS	END=89035212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr2	89035213	.	G	.	.	PASS	END=89035220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	89035221	.	A	.	.	PASS	END=89035247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	89035248	.	A	.	.	PASS	END=89035305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	89036001	.	T	.	.	PASS	END=89036081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	89036082	.	G	.	.	PASS	END=89036128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	89036129	.	T	.	.	PASS	END=89036146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	89036147	.	A	.	.	PASS	END=89036182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	89036183	.	T	.	.	PASS	END=89036209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	89036210	.	G	.	.	PASS	END=89036225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	89036226	.	G	.	.	PASS	END=89036234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	89036235	.	A	.	.	PASS	END=89036241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr2	89036242	.	C	.	.	PASS	END=89036244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr2	89037443	.	T	.	.	PASS	END=89037453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	89037454	.	G	.	.	PASS	END=89037473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	89037474	.	T	.	.	PASS	END=89037601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	89037602	.	A	.	.	PASS	END=89037623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	89037624	.	C	.	.	PASS	END=89037628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	89037629	.	C	.	.	PASS	END=89037644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	89049447	.	T	.	.	PASS	END=89049472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	89049473	.	T	.	.	PASS	END=89049583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr2	89049584	.	C	.	.	PASS	END=89049613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	89049614	.	G	.	.	PASS	END=89049622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	89049623	.	T	.	.	PASS	END=89049643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	89049644	.	A	.	.	PASS	END=89049646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	89156862	.	G	.	.	LowGQX	END=89156864	GT	./.
chr2	89156865	.	C	.	.	LowGQX	END=89156976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	89156977	.	A	.	.	LowGQX	END=89157196	GT	./.
chr2	89160049	.	T	.	.	LowGQX	END=89160148	GT	./.
chr2	89160367	.	A	.	.	LowGQX	END=89160380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	89160381	.	T	C	9.30	LowGQX	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=3.10;ReadPosRankSum=0.736;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,2:3:33.29:39,0,33:60:9:0.667
chr2	89160382	.	A	.	.	LowGQX	END=89160466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	89160702	.	T	.	.	LowGQX	END=89160801	GT	./.
chr2	89161006	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr2	89161007	.	A	.	.	LowGQX	END=89161008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	89161009	.	T	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr2	89161010	.	G	.	.	LowGQX	END=89161020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	89161021	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	89161022	.	G	.	.	LowGQX	END=89161027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	89161028	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr2	89161029	.	G	.	.	LowGQX	END=89161031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	89161032	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	89161033	.	T	.	.	LowGQX	END=89161036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	89161037	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	89161038	.	T	.	.	LowGQX	END=89161049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	89161050	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	89161051	.	T	.	.	LowGQX	END=89161056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	89161057	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	89161058	.	C	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	89161059	.	C	.	.	LowGQX	END=89161065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	89161066	.	A	.	.	LowGQX	.	GT	./.
chr2	89161067	.	A	.	.	LowGQX	END=89161068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	89161069	.	G	.	.	LowGQX	END=89161070	GT	./.
chr2	89161071	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	89161072	.	T	.	.	LowGQX	END=89161073	GT	./.
chr2	89161074	.	C	.	.	LowGQX	END=89161075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	89161076	.	C	.	.	LowGQX	END=89161105	GT	./.
chr2	89161367	.	A	.	.	LowGQX	END=89161421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	89161422	.	G	.	.	LowGQX	.	GT	./.
chr2	89161423	.	G	.	.	LowGQX	END=89161435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	89161436	.	C	.	.	LowGQX	END=89161466	GT	./.
chr2	89185002	.	T	.	.	LowGQX	END=89185161	GT	./.
chr2	89185355	.	G	.	.	LowGQX	END=89185356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	89185357	.	T	.	.	LowGQX	END=89185360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	89185361	.	T	.	.	LowGQX	END=89185363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	89185364	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr2	89185365	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr2	89185366	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr2	89185367	.	G	.	.	LowGQX	END=89185378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	89185379	.	A	.	32.98	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3:60:3
chr2	89185380	.	C	.	.	LowGQX	END=89185394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	89185395	.	C	.	.	LowGQX	END=89185398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	89185399	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr2	89185400	.	G	.	.	LowGQX	END=89185401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:60
chr2	89185402	.	T	.	.	LowGQX	END=89185404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr2	89185405	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr2	89185406	.	T	.	.	LowGQX	END=89185407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	89185408	.	T	.	.	LowGQX	END=89185410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr2	89185411	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	89185412	.	G	.	.	LowGQX	END=89185414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	89185415	.	G	.	.	PASS	END=89185416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	89185417	.	G	.	.	LowGQX	END=89185422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	89185423	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	89185424	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr2	89185425	.	C	.	.	LowGQX	END=89185427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	89185428	.	T	.	.	PASS	END=89185429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	89185430	.	A	.	.	LowGQX	END=89185431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	89185432	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	89185433	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr2	89185434	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	89185435	.	C	.	.	LowGQX	END=89185436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	89185437	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	89185438	.	G	.	.	LowGQX	END=89185441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:27:60
chr2	89185442	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr2	89185443	.	G	.	.	LowGQX	END=89185444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	89185445	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	89185446	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr2	89185447	.	G	.	.	PASS	END=89185448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	89185449	.	G	.	.	LowGQX	END=89185450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	89185451	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr2	89185452	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	89185453	.	T	.	.	PASS	END=89185458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	89185459	.	C	.	.	LowGQX	END=89185460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr2	89185461	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:2:60
chr2	89185462	.	C	.	.	PASS	END=89185464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	89185465	.	C	.	.	LowGQX	END=89185466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:60
chr2	89185467	.	A	.	.	PASS	END=89185483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	89185484	.	G	.	.	PASS	END=89185492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr2	89185493	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:5:60
chr2	89185494	.	A	.	.	PASS	END=89185511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr2	89185512	.	C	.	.	PASS	END=89185530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	89185531	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:18:60
chr2	89185532	.	T	.	.	PASS	END=89185539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:45:60
chr2	89185540	.	T	.	.	PASS	END=89185545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr2	89185546	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:45:60
chr2	89185547	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:12:60
chr2	89185548	.	A	.	.	PASS	END=89185570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:47:60
chr2	89185571	.	A	.	.	PASS	END=89185577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr2	89185578	.	G	.	.	PASS	END=89185580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:57:60
chr2	89185581	.	G	.	.	PASS	END=89185603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:63:60
chr2	89185604	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:35:60
chr2	89185605	.	C	.	.	PASS	END=89185619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:69:60
chr2	89185620	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:48:60
chr2	89185621	.	G	.	.	PASS	END=89185647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:60
chr2	89185648	.	T	.	.	PASS	END=89185662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:57:60
chr2	89185663	.	T	.	.	PASS	END=89185669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr2	89196785	.	A	.	.	LowGQX	END=89196884	GT	./.
chr2	89197004	.	G	.	.	LowGQX	END=89197300	GT	./.
chr2	89246818	.	G	.	.	PASS	END=89246922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	89246923	.	T	.	.	PASS	END=89246976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	89246977	.	C	.	.	PASS	END=89247044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	89247045	.	G	.	.	PASS	END=89247114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	89247217	.	T	.	.	PASS	END=89247287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:59
chr2	89247288	.	T	.	.	PASS	END=89247316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:59
chr2	89265780	.	G	.	.	PASS	END=89265830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	89265831	.	G	.	.	PASS	END=89265944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:58
chr2	89265945	.	C	.	.	PASS	END=89266003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:58
chr2	89266004	.	A	.	.	PASS	END=89266076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:58
chr2	89266180	.	C	.	.	PASS	END=89266279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	89277986	.	G	.	.	PASS	END=89277999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:35
chr2	89278000	.	T	.	.	PASS	END=89278077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:78:37
chr2	89278078	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:47:2:48
chr2	89278079	.	T	.	.	PASS	END=89278102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:75:48
chr2	89278103	.	T	C	131.99	PASS	BaseQRankSum=-0.596;DP=45;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=1.8938;MQ=51;MQ0=1;MQRankSum=0.759;QD=2.93;ReadPosRankSum=1.518;SB=-61.69	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:33,12:45:99:162,0,848:51:99:0.267
chr2	89278104	.	A	.	.	PASS	END=89278107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:75:51
chr2	89278108	.	G	.	.	PASS	END=89278134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:53
chr2	89278135	.	A	.	.	PASS	END=89278136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:84:57
chr2	89278137	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:53:57
chr2	89278138	.	C	.	.	PASS	END=89278149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:57
chr2	89278150	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:45:59
chr2	89278151	.	C	.	.	PASS	END=89278164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:59
chr2	89278165	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:36:59
chr2	89278166	.	A	.	.	PASS	END=89278171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:59
chr2	89278172	.	T	.	.	PASS	END=89278194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:60:59
chr2	89278195	.	T	.	.	PASS	END=89278214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:59
chr2	89278215	.	G	.	.	PASS	END=89278229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr2	89278230	.	T	.	.	PASS	END=89278238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	89278239	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	89278240	.	G	.	.	PASS	END=89278246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	89278247	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	89278248	.	G	.	.	PASS	END=89278250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	89278251	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr2	89278252	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr2	89278253	.	G	.	.	PASS	END=89278257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	89278258	.	T	.	.	LowGQX	END=89278259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	89278260	.	T	.	.	LowGQX	.	GT	./.
chr2	89278261	.	G	.	.	LowGQX	END=89278270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	89278271	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	89278272	.	T	.	.	LowGQX	END=89278294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	89278429	.	G	.	.	LowGQX	END=89278528	GT	./.
chr2	89291927	.	G	.	.	PASS	END=89291946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	89291947	.	T	.	.	PASS	END=89292063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:59
chr2	89292064	.	G	.	.	PASS	END=89292077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	89292078	.	C	.	.	PASS	END=89292086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	89292087	.	T	.	.	PASS	END=89292095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:84:60
chr2	89292096	.	T	.	.	PASS	END=89292134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:75:60
chr2	89292135	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:69:60
chr2	89292136	.	C	.	.	PASS	END=89292152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr2	89292153	.	G	.	.	PASS	END=89292223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	89292323	.	A	.	.	PASS	END=89292422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:55
chr2	89309478	.	G	.	.	PASS	END=89309636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:59
chr2	89309637	.	C	.	.	PASS	END=89309698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	89309699	.	G	.	.	PASS	END=89309767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	89309768	.	C	.	.	PASS	END=89309774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	89309877	.	T	.	.	PASS	END=89309968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:51
chr2	89309969	.	G	.	.	PASS	END=89309976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:51
chr2	89326667	.	G	.	.	LowGQX	END=89326730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:57
chr2	89326731	.	G	.	33.01	LowGQX	DP=3;MQ=57;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:57:3
chr2	89326732	.	G	.	.	LowGQX	END=89326797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	89326798	.	G	.	.	LowGQX	END=89326963	GT	./.
chr2	89327107	.	G	.	.	LowGQX	END=89327206	GT	./.
chr2	89339679	.	T	.	.	PASS	END=89339705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:33
chr2	89339706	.	T	.	.	PASS	END=89339721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:93:36
chr2	89339722	.	G	.	.	PASS	END=89339865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:37
chr2	89339866	.	A	.	.	PASS	END=89339879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:37
chr2	89339880	.	T	.	.	PASS	END=89339915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:35
chr2	89339916	.	G	.	.	PASS	END=89339944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:36
chr2	89339945	.	T	.	.	PASS	END=89340061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:30
chr2	89340062	.	C	.	.	PASS	END=89340086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:25
chr2	89340087	.	A	.	.	PASS	END=89340104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:20
chr2	89340105	.	C	.	.	LowMQ	END=89340167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:94:15
chr2	89340168	.	G	.	.	LowMQ	END=89340212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:81:11
chr2	89340213	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:165:57:11
chr2	89340214	.	C	.	.	LowMQ	END=89340217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:75:11
chr2	89345426	.	C	.	.	PASS	END=89345439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:78:36
chr2	89345440	.	A	.	.	PASS	END=89345450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:35
chr2	89345451	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:67:67:35
chr2	89345452	.	C	.	.	PASS	END=89345471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:34
chr2	89345472	.	T	.	.	PASS	END=89345589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:26
chr2	89345590	.	C	.	.	PASS	END=89345645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:77:29
chr2	89345646	.	T	.	.	PASS	END=89345686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:36
chr2	89345687	.	T	.	.	PASS	END=89345845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:31
chr2	89345887	.	T	.	.	PASS	END=89345956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:37
chr2	89345957	.	T	.	.	PASS	END=89345986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:36
chr2	89384661	.	A	.	.	PASS	END=89384666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:69:22
chr2	89384667	.	T	.	.	PASS	END=89384760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:81:24
chr2	89384761	.	C	.	.	PASS	END=89384797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:83:33
chr2	89384798	.	T	.	.	PASS	END=89384815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:37
chr2	89384816	.	T	.	.	PASS	END=89384817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:37
chr2	89384818	.	A	.	.	PASS	END=89384823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:36
chr2	89384824	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:38:36
chr2	89384825	.	T	.	.	PASS	END=89384835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:35
chr2	89384836	.	C	.	.	PASS	END=89384864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:36
chr2	89384865	.	G	.	.	PASS	END=89384882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:36
chr2	89384883	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:37
chr2	89384884	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:38
chr2	89384885	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:38
chr2	89384886	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:38
chr2	89384887	.	C	.	.	LowGQX	END=89384903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:37
chr2	89384904	.	T	.	.	LowGQX	END=89384909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:36
chr2	89384910	.	C	.	.	LowGQX	END=89384915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:36
chr2	89384916	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:30
chr2	89384917	.	G	.	39.02	LowGQX	DP=5;MQ=30;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.02:30:9
chr2	89384918	.	A	.	.	LowGQX	END=89384928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:30
chr2	89384929	.	G	.	.	LowGQX	END=89384930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:30
chr2	89384931	.	G	.	.	LowGQX	END=89384942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:23
chr2	89384943	.	C	.	.	LowGQX	END=89384952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:22
chr2	89384953	.	A	.	.	LowGQX	END=89384962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:22
chr2	89384963	.	T	.	33	LowGQX	DP=3;MQ=22;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:22:3
chr2	89384964	.	G	.	.	LowGQX	END=89384967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:22
chr2	89384968	.	T	.	39.02	LowGQX	DP=4;MQ=23;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.02:23:9
chr2	89384969	.	C	.	.	LowGQX	END=89384970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:23
chr2	89385112	.	G	.	33	LowGQX	DP=3;MQ=22;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:22:3
chr2	89385113	.	C	.	.	LowGQX	END=89385115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:22
chr2	89385116	.	A	.	.	LowGQX;LowMQ	END=89385127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:19
chr2	89385128	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89385129	.	T	.	.	LowGQX;LowMQ	END=89385148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:19
chr2	89385149	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89385150	.	G	.	.	LowGQX;LowMQ	END=89385165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:19
chr2	89385166	.	A	.	.	LowGQX;LowMQ	END=89385211	GT	./.
chr2	89399351	.	G	.	.	PASS	END=89399360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:42
chr2	89399361	.	A	.	.	PASS	END=89399491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:42
chr2	89399492	.	A	.	.	PASS	END=89399509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:55
chr2	89399510	.	C	.	.	PASS	END=89399591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:50
chr2	89399592	.	T	.	.	PASS	END=89399637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:42
chr2	89399638	.	C	.	.	PASS	END=89399647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:84:34
chr2	89399682	.	A	.	.	PASS	END=89399760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:30
chr2	89399761	.	C	.	.	PASS	END=89399831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:35
chr2	89399832	.	T	.	.	PASS	END=89399849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:81:29
chr2	89416821	.	T	.	.	PASS	END=89416827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:42
chr2	89416828	.	G	.	.	PASS	END=89416849;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:40
chr2	89416850	.	G	.	.	PASS	END=89416977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:40
chr2	89416978	.	A	.	.	PASS	END=89416994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:54
chr2	89416995	.	C	.	.	PASS	END=89417055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:56
chr2	89417056	.	A	.	.	PASS	END=89417091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:57
chr2	89417092	.	G	.	.	PASS	END=89417128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:58
chr2	89417231	.	C	.	.	PASS	END=89417330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:57
chr2	89442056	.	G	.	.	LowGQX;LowMQ	END=89442124	GT	./.
chr2	89442125	.	G	.	.	LowGQX	END=89442142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:38
chr2	89442143	.	A	.	33.01	LowGQX	DP=5;MQ=38;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:38:3
chr2	89442144	.	C	.	.	LowGQX	END=89442178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:3:38
chr2	89442179	.	C	.	33.01	LowGQX	DP=5;MQ=38;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:3.01:38:3
chr2	89442180	.	C	.	.	LowGQX	END=89442214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:38
chr2	89442215	.	C	.	.	LowGQX	END=89442231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	89442232	.	T	.	.	LowGQX	END=89442355	GT	./.
chr2	89442517	.	G	.	.	LowGQX	END=89442518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:50
chr2	89442519	.	A	.	.	LowGQX	.	GT	./.
chr2	89442520	.	A	.	.	LowGQX	END=89442521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:50
chr2	89442522	.	A	.	.	LowGQX	END=89442523	GT	./.
chr2	89442524	.	C	.	.	LowGQX	END=89442529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:50
chr2	89442530	.	A	.	.	LowGQX	.	GT	./.
chr2	89442531	.	T	.	.	LowGQX	END=89442546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:50
chr2	89442547	.	G	.	.	LowGQX	END=89442548	GT	./.
chr2	89442549	.	G	.	.	LowGQX	END=89442554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:50
chr2	89442555	.	G	.	.	LowGQX	.	GT	./.
chr2	89442556	.	T	.	.	LowGQX	END=89442558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:50
chr2	89442559	.	C	.	.	LowGQX	.	GT	./.
chr2	89442560	.	A	.	.	LowGQX	END=89442562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:50
chr2	89442563	.	A	.	.	LowGQX	.	GT	./.
chr2	89442564	.	G	.	.	LowGQX	END=89442577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:50
chr2	89442578	.	G	.	.	LowGQX	.	GT	./.
chr2	89442579	.	C	.	.	LowGQX	END=89442585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:50
chr2	89442586	.	T	.	.	LowGQX	END=89442587	GT	./.
chr2	89442588	.	C	.	.	LowGQX	END=89442589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:50
chr2	89442590	.	A	.	.	LowGQX	END=89442591	GT	./.
chr2	89442592	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:50
chr2	89442593	.	G	.	.	LowGQX	.	GT	./.
chr2	89442594	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:50
chr2	89442595	.	T	.	.	LowGQX	.	GT	./.
chr2	89442596	.	C	.	.	LowGQX	END=89442608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:50
chr2	89442609	.	A	.	.	LowGQX	END=89442610	GT	./.
chr2	89442611	.	C	.	.	LowGQX	END=89442613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:50
chr2	89442614	.	A	.	.	LowGQX	END=89442616	GT	./.
chr2	89459234	.	G	.	.	LowGQX	END=89459241	GT	./.
chr2	89459242	.	C	.	.	LowGQX	END=89459252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	89459253	.	A	.	.	LowGQX	END=89459254	GT	./.
chr2	89459255	.	G	.	.	LowGQX	END=89459270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	89459271	.	A	.	.	LowGQX	.	GT	./.
chr2	89459272	.	G	.	.	LowGQX	END=89459309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	89459310	.	A	.	.	LowGQX	.	GT	./.
chr2	89459311	.	T	.	.	LowGQX	END=89459314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	89459315	.	T	.	.	LowGQX	.	GT	./.
chr2	89459316	.	C	.	.	LowGQX	END=89459320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	89459321	.	A	.	.	LowGQX	.	GT	./.
chr2	89459322	.	T	.	.	LowGQX	END=89459332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	89459333	.	T	.	.	LowGQX	.	GT	./.
chr2	89459334	.	G	.	.	LowGQX	END=89459338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	89459339	.	T	.	.	LowGQX	.	GT	./.
chr2	89459340	.	C	.	.	LowGQX	END=89459353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	89459354	.	A	.	.	LowGQX	END=89459355	GT	./.
chr2	89459356	.	A	.	.	LowGQX	END=89459360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	89459361	.	C	.	.	LowGQX	END=89459362	GT	./.
chr2	89459363	.	G	.	.	LowGQX	END=89459372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	89459373	.	C	.	.	LowGQX	.	GT	./.
chr2	89459374	.	T	.	.	LowGQX	END=89459381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	89459382	.	G	.	33	LowGQX	DP=2;MQ=49;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:49:3
chr2	89459383	.	A	.	.	LowGQX	END=89459396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	89459397	.	A	.	.	LowGQX	END=89459398	GT	./.
chr2	89459399	.	C	.	.	LowGQX	END=89459400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	89459401	.	G	.	.	LowGQX	.	GT	./.
chr2	89459402	.	G	.	.	LowGQX	END=89459403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	89459404	.	T	.	.	LowGQX	END=89459405	GT	./.
chr2	89459406	.	C	.	.	LowGQX	END=89459411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	89459412	.	G	.	.	LowGQX	END=89459415	GT	./.
chr2	89459416	.	C	.	.	LowGQX	END=89459417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	89459418	.	G	.	.	LowGQX	.	GT	./.
chr2	89459419	.	T	.	.	LowGQX	END=89459424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459425	.	C	.	.	LowGQX	.	GT	./.
chr2	89459426	.	T	.	.	LowGQX	END=89459429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459430	.	A	.	.	LowGQX	.	GT	./.
chr2	89459431	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459432	.	C	.	.	LowGQX	.	GT	./.
chr2	89459433	.	A	.	.	LowGQX	END=89459436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459437	.	C	.	33	LowGQX	DP=2;MQ=28;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:28:3
chr2	89459438	.	T	.	33	LowGQX	DP=2;MQ=28;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:28:3
chr2	89459439	.	C	.	.	LowGQX	END=89459441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459442	.	A	.	33	LowGQX	DP=2;MQ=28;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:28:3
chr2	89459443	.	C	.	.	LowGQX	END=89459444	GT	./.
chr2	89459445	.	G	.	.	LowGQX	END=89459447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459448	.	C	.	.	LowGQX	END=89459449	GT	./.
chr2	89459450	.	G	.	.	LowGQX	END=89459451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459452	.	C	.	.	LowGQX	.	GT	./.
chr2	89459453	.	A	.	.	LowGQX	END=89459456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459457	.	G	.	.	LowGQX	.	GT	./.
chr2	89459458	.	A	.	.	LowGQX	END=89459466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459467	.	T	.	33	LowGQX	DP=2;MQ=28;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:28:3
chr2	89459468	.	T	.	.	LowGQX	END=89459470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459471	.	C	.	.	LowGQX	END=89459472	GT	./.
chr2	89459473	.	T	.	.	LowGQX	END=89459476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459477	.	G	.	.	LowGQX	.	GT	./.
chr2	89459478	.	A	.	.	LowGQX	END=89459480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459481	.	C	.	.	LowGQX	.	GT	./.
chr2	89459482	.	A	.	.	LowGQX	END=89459483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459484	.	A	.	.	LowGQX	END=89459486	GT	./.
chr2	89459487	.	C	.	.	LowGQX	END=89459499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459500	.	G	.	.	LowGQX	.	GT	./.
chr2	89459501	.	A	.	.	LowGQX	END=89459502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459503	.	T	.	33	LowGQX	DP=2;MQ=28;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:28:3
chr2	89459504	.	G	.	.	LowGQX	.	GT	./.
chr2	89459505	.	A	.	.	LowGQX	END=89459509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459510	.	G	.	33	LowGQX	DP=2;MQ=28;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:28:3
chr2	89459511	.	C	.	.	LowGQX	END=89459513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459514	.	A	.	.	LowGQX	.	GT	./.
chr2	89459515	.	A	.	.	LowGQX	END=89459524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459525	.	T	.	33	LowGQX	DP=2;MQ=28;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:28:3
chr2	89459526	.	G	.	.	LowGQX	END=89459527;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459528	.	A	.	33	LowGQX	DP=2;MQ=28;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:28:3
chr2	89459529	.	G	.	.	LowGQX	END=89459530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:28
chr2	89459714	.	C	.	.	LowGQX	END=89459813	GT	./.
chr2	89475811	.	G	.	.	LowGQX	END=89476122	GT	./.
chr2	89476540	.	C	.	.	LowGQX	END=89476635	GT	./.
chr2	89476636	.	G	.	.	LowGQX	END=89476639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:39
chr2	89512907	.	G	.	.	PASS	END=89513105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:46
chr2	89513106	.	A	.	.	PASS	END=89513144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:40
chr2	89513145	.	T	.	.	PASS	END=89513203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:38
chr2	89513305	.	A	.	.	PASS	END=89513396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:55
chr2	89513397	.	G	.	.	PASS	END=89513404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:59
chr2	89521167	.	T	.	.	LowGQX	END=89521496	GT	./.
chr2	89521838	.	C	.	.	LowGQX	END=89521937	GT	./.
chr2	89533686	.	T	.	.	LowGQX	END=89533965	GT	./.
chr2	89544252	.	T	.	.	LowGQX	END=89544475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	89544476	.	C	.	33	LowGQX	DP=2;MQ=48;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:48:3
chr2	89544477	.	G	.	.	LowGQX	END=89544515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	89544516	.	T	.	.	LowGQX	END=89544581	GT	./.
chr2	89544975	.	C	.	.	LowGQX	END=89545074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr2	89567746	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:14:3:11
chr2	89567747	.	T	.	.	LowGQX;LowMQ	END=89567748	GT	./.
chr2	89567749	.	C	.	.	LowGQX;LowMQ	END=89567750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:3:15
chr2	89567751	.	C	.	.	LowGQX;LowMQ	END=89567764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:6:16
chr2	89567765	.	T	.	.	LowGQX	END=89567797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:18:20
chr2	89567798	.	T	.	.	LowGQX;LowMQ	END=89567800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:21:19
chr2	89567801	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:33:0:19
chr2	89567802	.	C	.	.	LowGQX;LowMQ	END=89567804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:18:19
chr2	89567805	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:32:24:19
chr2	89567806	.	C	.	.	LowGQX;LowMQ	END=89567812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:18:19
chr2	89567813	.	C	.	.	LowGQX;LowMQ	END=89567816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:21:19
chr2	89567817	.	T	.	.	LowGQX;LowMQ	END=89567824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:18:19
chr2	89567825	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:34:15:19
chr2	89567826	.	A	.	.	LowGQX;LowMQ	END=89567828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:18:19
chr2	89567829	.	T	.	.	LowGQX;LowMQ	END=89567830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:21:19
chr2	89567831	.	A	.	.	LowGQX;LowMQ	END=89567833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:18:19
chr2	89567834	.	T	.	.	LowGQX;LowMQ	END=89567837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:21:19
chr2	89567838	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:33:18:20
chr2	89567839	.	C	.	.	LowGQX	END=89567843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:21:20
chr2	89567844	.	A	.	.	LowGQX	END=89567846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:18:20
chr2	89567847	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:27:20
chr2	89567848	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:31:21:19
chr2	89567849	.	C	.	.	LowGQX	END=89567857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:21:20
chr2	89567858	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:12:20
chr2	89567859	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:0:20
chr2	89567860	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:24:20
chr2	89567861	.	C	.	.	LowGQX	END=89567862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:18:20
chr2	89567863	.	T	.	.	LowGQX	END=89567869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:21:20
chr2	89567870	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:31:15:21
chr2	89567871	.	C	.	.	LowGQX	END=89567894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:21:20
chr2	89567895	.	C	.	.	PASS	END=89567896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:30:21
chr2	89567897	.	T	.	.	LowGQX	END=89567898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:21:21
chr2	89567899	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:30:21
chr2	89567900	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:37:27:21
chr2	89567901	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:30:21
chr2	89567902	.	C	.	.	LowGQX	END=89567914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:21:20
chr2	89567915	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:43:24:19
chr2	89567916	.	C	.	.	LowGQX;LowMQ	END=89567917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:12:17
chr2	89567918	.	T	.	.	LowGQX;LowMQ	END=89567925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:18:17
chr2	89567926	.	T	.	.	LowGQX;LowMQ	END=89567927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:15:18
chr2	89567928	.	T	.	.	LowGQX;LowMQ	END=89567931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:18:18
chr2	89567932	.	C	.	.	LowGQX;LowMQ	END=89567943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:21:18
chr2	89567944	.	T	.	.	LowGQX;LowMQ	END=89567945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:18:17
chr2	89567946	.	A	.	.	LowGQX;LowMQ	END=89567948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:24:17
chr2	89567949	.	A	.	.	LowGQX;LowMQ	END=89567950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:18:18
chr2	89567951	.	T	.	.	LowGQX;LowMQ	END=89567955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:24:17
chr2	89567956	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:44:30:19
chr2	89567957	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:44:24:19
chr2	89567958	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:44:30:19
chr2	89567959	.	G	.	.	PASS	END=89567971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:33:20
chr2	89567972	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:56:39:19
chr2	89567973	.	G	.	.	PASS	END=89567981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:42:20
chr2	89567982	.	T	.	.	LowMQ	END=89567986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:45:18
chr2	89567987	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:72:33:18
chr2	89567988	.	C	.	.	LowMQ	END=89568001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:42:17
chr2	89568002	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:79:63:21
chr2	89568003	.	A	.	.	PASS	END=89568006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:48:21
chr2	89568007	.	A	.	.	PASS	END=89568017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:57:21
chr2	89568018	.	A	.	.	PASS	END=89568029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:66:24
chr2	89568030	.	T	.	.	PASS	END=89568053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:72:27
chr2	89568155	.	T	.	.	PASS	END=89568240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:37
chr2	89568241	.	C	.	.	PASS	END=89568254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:93:33
chr2	89597009	.	T	.	.	LowGQX;LowMQ	END=89597011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:21:11
chr2	89597012	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:73:18:11
chr2	89597013	.	A	.	.	LowGQX;LowMQ	END=89597027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:21:9
chr2	89597028	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:100:27:9
chr2	89597029	.	T	.	.	LowMQ	END=89597030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:30:9
chr2	89597031	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:101:27:9
chr2	89597032	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:101:30:9
chr2	89597033	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:101:27:9
chr2	89597034	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:103:30:9
chr2	89597035	.	T	.	.	LowGQX;LowMQ	END=89597038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:27:9
chr2	89597039	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:103:30:9
chr2	89597040	.	T	.	.	LowGQX;LowMQ	END=89597041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:24:9
chr2	89597042	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:102:18:9
chr2	89597043	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:105:24:9
chr2	89597044	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:105:18:9
chr2	89597045	.	G	.	.	LowGQX;LowMQ	END=89597061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:21:7
chr2	89597062	.	C	.	.	LowGQX;LowMQ	END=89597093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:15:6
chr2	89597094	.	A	.	.	LowGQX;LowMQ	END=89597113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:18:7
chr2	89597114	.	G	.	.	LowGQX;LowMQ	END=89597119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:24:8
chr2	89597120	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:94:18:8
chr2	89597121	.	A	.	.	LowGQX;LowMQ	END=89597125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:21:7
chr2	89597126	.	A	.	.	LowGQX;LowMQ	END=89597130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:18:7
chr2	89597131	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:99:15:7
chr2	89597132	.	G	.	.	LowGQX;LowMQ	END=89597136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:21:7
chr2	89597137	.	C	.	.	LowGQX;LowMQ	END=89597138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:18:8
chr2	89597139	.	G	.	.	LowGQX;LowMQ	END=89597143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:21:8
chr2	89597144	.	C	.	.	LowGQX;LowMQ	END=89597145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:18:8
chr2	89597146	.	A	.	.	LowGQX;LowMQ	END=89597148;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:21:8
chr2	89597149	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:91:18:8
chr2	89597150	.	G	.	.	LowGQX;LowMQ	END=89597154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:21:8
chr2	89597155	.	C	.	.	LowGQX;LowMQ	END=89597156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:15:8
chr2	89597157	.	C	.	.	LowGQX;LowMQ	END=89597160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:21:8
chr2	89597161	.	A	.	.	LowGQX;LowMQ	END=89597166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:12:7
chr2	89597167	.	G	.	.	LowGQX;LowMQ	END=89597177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:12:7
chr2	89597178	.	A	.	.	LowGQX;LowMQ	END=89597185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:6:7
chr2	89597186	.	T	.	.	LowGQX;LowMQ	END=89597194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:9:7
chr2	89597195	.	C	.	.	LowGQX;LowMQ	END=89597197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:6:7
chr2	89597198	.	A	.	.	LowGQX;LowMQ	END=89597211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:9:7
chr2	89597212	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:63:6:7
chr2	89597213	.	A	.	.	LowGQX;LowMQ	END=89597224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:9:6
chr2	89597225	.	C	.	.	LowGQX;LowMQ	END=89597228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:6:6
chr2	89597229	.	C	.	.	LowGQX;LowMQ	END=89597231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:9:6
chr2	89597232	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:71:6:6
chr2	89597233	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:73:12:6
chr2	89597234	.	C	.	.	LowGQX;LowMQ	END=89597236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:6:6
chr2	89597237	.	G	.	.	LowGQX;LowMQ	END=89597244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:9:6
chr2	89597245	.	T	.	.	LowGQX;LowMQ	END=89597247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:6:5
chr2	89597248	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:107:6:5
chr2	89597249	.	G	.	.	LowGQX;LowMQ	END=89597263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:9:5
chr2	89597264	.	A	.	.	LowGQX;LowMQ	END=89597265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:3:4
chr2	89597266	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89597267	.	T	.	.	LowGQX;LowMQ	END=89597284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:3:4
chr2	89597285	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89597286	.	G	.	.	LowGQX;LowMQ	END=89597288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:3:3
chr2	89597289	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89597290	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:101:3:3
chr2	89597291	.	G	.	.	LowGQX;LowMQ	END=89597293	GT	./.
chr2	89597294	.	C	.	.	LowGQX;LowMQ	END=89597297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:3:3
chr2	89597298	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89597299	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:104:3:3
chr2	89597300	.	G	.	.	LowGQX;LowMQ	END=89597303	GT	./.
chr2	89597304	.	T	.	.	LowGQX;LowMQ	END=89597310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:3:3
chr2	89597311	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89597312	.	G	.	.	LowGQX;LowMQ	END=89597315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:3:3
chr2	89597316	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89597358	.	C	.	.	LowGQX;LowMQ	END=89597362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:3:3
chr2	89597363	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89597364	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:109:3:3
chr2	89597365	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89597366	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:108:3:3
chr2	89597367	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89597368	.	G	.	.	LowGQX;LowMQ	END=89597371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:3:3
chr2	89597372	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89597373	.	C	.	.	LowGQX;LowMQ	END=89597387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:3:3
chr2	89597388	.	A	.	.	LowGQX;LowMQ	END=89597396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:3:2
chr2	89597397	.	T	.	.	LowGQX;LowMQ	END=89597500	GT	./.
chr2	89597501	.	G	.	.	LowGQX;LowMQ	END=89597517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:3:3
chr2	89619371	.	T	.	.	LowGQX;LowMQ	END=89619391	GT	./.
chr2	89619392	.	G	.	.	LowGQX;LowMQ	END=89619420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:0:5
chr2	89619421	.	A	.	.	LowGQX;LowMQ	END=89619422	GT	./.
chr2	89619423	.	T	.	.	LowGQX;LowMQ	END=89619427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:3:5
chr2	89619428	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89619429	.	G	.	.	LowGQX;LowMQ	END=89619434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:3:5
chr2	89619435	.	A	.	.	LowGQX;LowMQ	END=89619437	GT	./.
chr2	89619438	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:34:3:5
chr2	89619439	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89619440	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:34:3:5
chr2	89619441	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89619442	.	T	.	.	LowGQX;LowMQ	END=89619447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:3:5
chr2	89619448	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89619449	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:35:3:5
chr2	89619450	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89619451	.	G	.	.	LowGQX;LowMQ	END=89619459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:3:4
chr2	89619460	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89619461	.	T	.	.	LowGQX;LowMQ	END=89619462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:3:5
chr2	89619463	.	T	.	.	LowGQX;LowMQ	END=89619467	GT	./.
chr2	89619468	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:38:3:4
chr2	89619469	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89619470	.	T	.	.	LowGQX;LowMQ	END=89619472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:3:4
chr2	89619473	.	A	.	.	LowGQX;LowMQ	END=89619474	GT	./.
chr2	89619475	.	T	.	.	LowGQX;LowMQ	END=89619478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:3:4
chr2	89619479	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89619480	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:39:3:4
chr2	89619481	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89619482	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:39:3:4
chr2	89619483	.	A	.	.	LowGQX;LowMQ	END=89619484	GT	./.
chr2	89619485	.	C	.	.	LowGQX;LowMQ	END=89619514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:3:5
chr2	89619515	.	T	.	.	LowGQX;LowMQ	END=89619518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:6:7
chr2	89619519	.	G	.	.	LowGQX;LowMQ	END=89619523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:9:8
chr2	89619524	.	G	.	.	LowGQX;LowMQ	END=89619528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:12:8
chr2	89619529	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:51:9:8
chr2	89619530	.	G	.	.	LowGQX;LowMQ	END=89619533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:12:8
chr2	89619534	.	T	.	.	LowGQX;LowMQ	END=89619535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:9:8
chr2	89619536	.	A	.	.	LowGQX;LowMQ	END=89619538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:15:8
chr2	89619539	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:52:9:8
chr2	89619540	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:52:15:8
chr2	89619541	.	C	.	.	LowGQX;LowMQ	END=89619549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:9:8
chr2	89619550	.	G	.	.	LowGQX;LowMQ	END=89619555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:12:8
chr2	89619556	.	G	.	.	LowGQX;LowMQ	END=89619564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:15:9
chr2	89619565	.	A	.	.	LowGQX;LowMQ	END=89619573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:21:10
chr2	89619574	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:61:18:10
chr2	89619575	.	G	.	.	LowGQX;LowMQ	END=89619594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:21:9
chr2	89619595	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:73:18:9
chr2	89619596	.	C	.	.	LowGQX;LowMQ	END=89619608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:21:9
chr2	89619609	.	G	.	.	LowMQ	END=89619611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:30:9
chr2	89619612	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:83:27:9
chr2	89619613	.	C	.	.	LowMQ	END=89619628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:30:10
chr2	89619629	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:99:42:10
chr2	89619630	.	G	.	.	LowMQ	END=89619632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:30:10
chr2	89619633	.	G	.	.	LowMQ	END=89619637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:36:10
chr2	89619638	.	G	.	.	LowMQ	END=89619641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:33:10
chr2	89619642	.	G	.	.	LowMQ	END=89619648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:36:11
chr2	89619649	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:94:33:11
chr2	89619650	.	C	.	.	LowMQ	END=89619670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:36:10
chr2	89619671	.	T	.	.	LowMQ	END=89619678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:30:10
chr2	89619679	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:84:5:10
chr2	89619680	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:84:33:10
chr2	89619780	.	T	.	.	LowMQ	END=89619781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:48:12
chr2	89619782	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:99:28:12
chr2	89619783	.	C	.	.	LowMQ	END=89619789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:48:12
chr2	89619790	.	T	.	.	LowMQ	END=89619793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:56:16
chr2	89619794	.	C	.	.	LowMQ	END=89619811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:75:16
chr2	89619812	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:112:99:19
chr2	89619813	.	G	.	.	PASS	END=89619857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:20
chr2	89619858	.	G	.	.	PASS	END=89619879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:27
chr2	89629861	.	T	.	.	LowGQX	END=89630190	GT	./.
chr2	89890559	.	C	.	.	LowGQX	END=89890565	GT	./.
chr2	89890566	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	89890567	.	C	.	.	LowGQX	.	GT	./.
chr2	89890568	.	A	.	.	LowGQX	END=89890572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	89890573	.	G	.	.	LowGQX	.	GT	./.
chr2	89890574	.	C	.	.	LowGQX	END=89890596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	89890597	.	G	.	.	LowGQX	.	GT	./.
chr2	89890598	.	C	.	.	LowGQX	END=89890633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	89890634	.	T	.	.	LowGQX	.	GT	./.
chr2	89890635	.	G	.	.	LowGQX	END=89890658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	89890976	.	T	.	.	LowGQX	END=89890995	GT	./.
chr2	89890996	.	G	.	.	LowGQX;LowMQ	END=89891233	GT	./.
chr2	89891234	.	T	.	.	LowGQX	END=89891315	GT	./.
chr2	89901232	.	C	.	.	PASS	END=89901273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:34
chr2	89901274	.	G	.	.	PASS	END=89901312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:26
chr2	89901313	.	G	.	.	PASS	END=89901350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:20
chr2	89901351	.	C	.	.	LowMQ	END=89901365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:81:15
chr2	89901366	.	C	.	.	LowMQ	END=89901382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:63:12
chr2	89901383	.	A	.	.	LowMQ	END=89901391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:45:9
chr2	89901482	.	T	.	.	LowMQ	END=89901489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:36:12
chr2	89901490	.	T	.	.	LowMQ	END=89901494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:42:12
chr2	89901495	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:84:33:12
chr2	89901496	.	G	.	.	LowMQ	END=89901501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:45:12
chr2	89901502	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:89:36:12
chr2	89901503	.	G	.	.	LowMQ	END=89901507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:42:12
chr2	89901508	.	A	.	.	LowMQ	END=89901532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:48:12
chr2	89901533	.	C	.	.	LowMQ	END=89901543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:45:12
chr2	89901544	.	T	.	.	LowMQ	END=89901546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:39:12
chr2	89901547	.	G	.	.	LowMQ	END=89901555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:42:11
chr2	89901556	.	A	.	.	LowMQ	END=89901565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:33:11
chr2	89901566	.	T	.	.	LowMQ	END=89901600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:30:11
chr2	89901601	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:59:27:11
chr2	89901602	.	T	.	.	LowMQ	END=89901603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:30:11
chr2	89901604	.	A	.	.	LowGQX;LowMQ	END=89901608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:21:10
chr2	89901609	.	G	.	.	LowGQX;LowMQ	END=89901611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:18:10
chr2	89901612	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:49:12:10
chr2	89901613	.	C	.	.	LowGQX;LowMQ	END=89901621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:18:10
chr2	89901622	.	C	.	.	LowGQX;LowMQ	END=89901623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:12:10
chr2	89901624	.	A	.	.	LowGQX;LowMQ	END=89901627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:18:10
chr2	89901628	.	A	.	.	LowGQX;LowMQ	END=89901630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:21:10
chr2	89901631	.	G	.	.	LowGQX;LowMQ	END=89901632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:18:10
chr2	89901633	.	C	.	.	LowGQX;LowMQ	END=89901640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:21:10
chr2	89901641	.	T	.	.	LowGQX;LowMQ	END=89901648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:15:9
chr2	89901649	.	T	.	.	LowGQX;LowMQ	END=89901654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:12:7
chr2	89901655	.	G	.	.	LowGQX;LowMQ	END=89901658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:9:7
chr2	89901659	.	C	.	.	LowGQX;LowMQ	END=89901676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:3:5
chr2	89901677	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89901678	.	C	.	.	LowGQX;LowMQ	END=89901750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:3:4
chr2	89901751	.	T	.	.	LowGQX;LowMQ	END=89901774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:3:5
chr2	89901775	.	A	.	.	LowGQX;LowMQ	END=89901811	GT	./.
chr2	89901835	.	G	.	.	LowGQX;LowMQ	END=89901994	GT	./.
chr2	89911335	.	A	.	.	LowGQX	END=89911494	GT	./.
chr2	89923467	.	C	.	.	LowGQX;LowMQ	END=89923575	GT	./.
chr2	89923576	.	C	.	.	LowGQX;LowMQ	END=89923589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:3:2
chr2	89923590	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89923591	.	G	.	.	LowGQX;LowMQ	END=89923605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:3:2
chr2	89923606	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89923607	.	A	.	.	LowGQX;LowMQ	END=89923621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:3:2
chr2	89923622	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89923623	.	A	.	.	LowGQX;LowMQ	END=89923626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:3:2
chr2	89923717	.	T	.	.	LowGQX;LowMQ	END=89923721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:9:6
chr2	89923722	.	A	.	.	LowGQX;LowMQ	END=89923723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:6:6
chr2	89923724	.	C	.	.	LowGQX;LowMQ	END=89923725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:9:6
chr2	89923726	.	C	.	.	LowGQX;LowMQ	END=89923730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:3:6
chr2	89923731	.	G	.	.	LowGQX;LowMQ	END=89923740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:6:5
chr2	89923741	.	A	.	.	LowGQX;LowMQ	END=89923744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:3:5
chr2	89923745	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:84:9:5
chr2	89923746	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:86:3:5
chr2	89923747	.	A	.	.	LowGQX;LowMQ	END=89923750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:6:5
chr2	89923751	.	G	.	.	LowGQX;LowMQ	END=89923754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:3:5
chr2	89923755	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:86:9:5
chr2	89923756	.	A	.	.	LowGQX;LowMQ	END=89923761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:3:5
chr2	89923762	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:93:12:6
chr2	89923763	.	A	.	.	LowGQX;LowMQ	END=89923764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:3:6
chr2	89923765	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:94:12:6
chr2	89923766	.	C	.	.	LowGQX;LowMQ	END=89923768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:6:6
chr2	89923769	.	C	.	.	LowGQX;LowMQ	END=89923772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:9:5
chr2	89923773	.	T	.	.	LowGQX;LowMQ	END=89923775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:6:5
chr2	89923776	.	G	.	.	LowGQX;LowMQ	END=89923778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:9:5
chr2	89923779	.	T	.	.	LowGQX;LowMQ	END=89923781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:3:5
chr2	89923782	.	G	.	.	LowGQX;LowMQ	END=89923783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:0:5
chr2	89923784	.	A	.	.	LowGQX;LowMQ	END=89923798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:6:5
chr2	89923799	.	C	.	.	LowGQX;LowMQ	END=89923829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:3:3
chr2	89923830	.	A	.	.	LowGQX;LowMQ	END=89923851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:3:3
chr2	89923852	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89923853	.	G	.	.	LowGQX;LowMQ	END=89923879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:3:3
chr2	89923880	.	G	.	.	LowGQX;LowMQ	END=89923947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:3:3
chr2	89923948	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89923949	.	T	.	.	LowGQX;LowMQ	END=89923958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:3:3
chr2	89923959	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89923960	.	C	.	.	LowGQX;LowMQ	END=89923964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:3:3
chr2	89923965	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89923966	.	G	.	.	LowGQX;LowMQ	END=89923967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:3:3
chr2	89923968	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89923969	.	G	.	.	LowGQX;LowMQ	END=89923974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:3:3
chr2	89923975	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89923976	.	G	.	.	LowGQX;LowMQ	END=89923989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:3:3
chr2	89923990	.	C	.	.	LowGQX;LowMQ	END=89923995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:6:5
chr2	89923996	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:73:3:5
chr2	89923997	.	T	.	.	LowGQX;LowMQ	END=89923998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:6:5
chr2	89923999	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:73:3:5
chr2	89924000	.	C	.	.	LowGQX;LowMQ	END=89924001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:9:6
chr2	89924002	.	G	.	.	LowGQX;LowMQ	END=89924003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:3:6
chr2	89924004	.	C	.	.	LowGQX;LowMQ	END=89924005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:6:6
chr2	89924006	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:69:3:6
chr2	89924007	.	C	.	.	LowGQX;LowMQ	END=89924008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:9:6
chr2	89924009	.	G	.	.	LowGQX;LowMQ	END=89924012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:3:6
chr2	89924013	.	T	.	.	LowGQX;LowMQ	END=89924014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:6:6
chr2	89924015	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	89924016	.	A	.	.	LowGQX;LowMQ	END=89924019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:3:6
chr2	89924020	.	C	.	.	LowGQX;LowMQ	END=89924023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:6:6
chr2	89924024	.	T	.	.	LowGQX;LowMQ	END=89924025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:3:6
chr2	89924026	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:59:9:6
chr2	89952858	.	G	.	.	PASS	END=89952946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:38
chr2	89952947	.	T	.	.	PASS	END=89952957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:50
chr2	89953048	.	T	.	.	PASS	END=89953096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:27
chr2	89953097	.	C	.	.	PASS	END=89953125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:93:22
chr2	89953126	.	T	.	.	PASS	END=89953136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:72:22
chr2	89953137	.	T	.	.	PASS	END=89953147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:60:20
chr2	89953148	.	T	.	.	PASS	END=89953155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:51:20
chr2	89953156	.	T	.	.	PASS	END=89953158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:42:20
chr2	89953159	.	G	.	.	LowMQ	END=89953162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:48:19
chr2	89953163	.	C	.	.	PASS	END=89953174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:39:20
chr2	89953175	.	G	.	.	LowMQ	END=89953180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:33:19
chr2	89953181	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:33:20
chr2	89953182	.	C	.	.	PASS	END=89953184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:36:20
chr2	89953185	.	A	.	.	PASS	END=89953186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:45:21
chr2	89953187	.	A	.	.	PASS	END=89953189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:39:21
chr2	89953190	.	A	.	.	LowMQ	END=89953194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:33:19
chr2	89953195	.	A	.	.	LowMQ	END=89953196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:30:19
chr2	89953197	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:53:24:19
chr2	89953198	.	C	.	.	LowMQ	END=89953199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:33:19
chr2	89953200	.	C	.	.	PASS	END=89953205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:36:20
chr2	89953206	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:56:8:20
chr2	89953207	.	T	.	.	PASS	END=89953217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:33:20
chr2	89953218	.	G	.	.	LowMQ	END=89953219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:36:19
chr2	89953220	.	T	.	.	LowGQX;LowMQ	END=89953221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:24:18
chr2	89953222	.	C	.	.	LowMQ	END=89953223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:30:19
chr2	89953224	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:50:24:19
chr2	89953225	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:49:30:19
chr2	89953226	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:50:10:20
chr2	89953227	.	A	.	.	PASS	END=89953238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:30:20
chr2	89953239	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:44:27:21
chr2	89953240	.	G	.	.	PASS	END=89953252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:30:21
chr2	89953253	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:42:27:22
chr2	89953254	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:30:22
chr2	89953255	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:36:24:22
chr2	89953256	.	C	.	.	PASS	END=89953258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:30:22
chr2	89953259	.	T	.	.	LowGQX	END=89953262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:24:22
chr2	89953263	.	A	.	.	PASS	END=89953264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:30:22
chr2	89953265	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:35:21:22
chr2	89953266	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:30:22
chr2	89953267	.	G	.	.	LowGQX	END=89953269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:27:22
chr2	89953270	.	C	.	.	PASS	END=89953271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:33:22
chr2	89953272	.	G	.	.	LowGQX	END=89953273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:21:22
chr2	89953274	.	G	.	.	PASS	END=89953279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:30:22
chr2	89953280	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:40:27:22
chr2	89953281	.	T	.	.	PASS	END=89953282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:33:22
chr2	89953283	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:40:27:22
chr2	89953284	.	A	.	.	PASS	END=89953285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:39:22
chr2	89953286	.	T	.	.	LowGQX	END=89953287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:27:22
chr2	89953288	.	T	.	.	PASS	END=89953319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:30:21
chr2	89953320	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:39:27:23
chr2	89953321	.	C	.	.	PASS	END=89953323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:36:23
chr2	89953324	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:39:27:23
chr2	89953325	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:40:10:23
chr2	89953326	.	T	.	.	PASS	END=89953332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:33:23
chr2	89953333	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:30:23
chr2	89953334	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:35:21:21
chr2	89953335	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:30:21
chr2	89953336	.	A	.	.	LowGQX	END=89953337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:21:21
chr2	89953338	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:30:21
chr2	89953339	.	A	.	.	LowGQX	END=89953340;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:18:21
chr2	89953341	.	T	.	.	LowGQX	END=89953347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:21:21
chr2	89953348	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:32:18:22
chr2	89953349	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:12:22
chr2	89953350	.	C	.	.	LowGQX	END=89953351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:15:21
chr2	89953352	.	C	.	.	LowGQX	END=89953357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:21:21
chr2	89975678	.	A	.	.	LowGQX	END=89975692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	89975693	.	A	.	.	LowGQX	END=89975777	GT	./.
chr2	89976167	.	T	.	.	LowGQX	END=89976223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	89976224	.	C	.	.	LowGQX	.	GT	./.
chr2	89976225	.	C	.	.	LowGQX	END=89976226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	89976227	.	T	.	.	LowGQX	END=89976503	GT	./.
chr2	89976504	.	G	.	.	LowGQX	END=89976516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	89986326	.	A	.	.	LowGQX	END=89986425	GT	./.
chr2	89986768	.	G	.	.	LowGQX	END=89987081	GT	./.
chr2	89998799	.	A	.	.	LowGQX	END=89998814	GT	./.
chr2	89998815	.	C	.	.	LowGQX	END=89998875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr2	89998876	.	A	.	.	LowGQX	.	GT	./.
chr2	89998877	.	A	.	.	LowGQX	END=89998898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr2	89999236	.	T	.	.	LowGQX	END=89999564	GT	./.
chr2	90007671	.	G	.	.	PASS	END=90007770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:54
chr2	90007857	.	G	.	.	PASS	END=90007900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:36
chr2	90007901	.	G	.	.	PASS	END=90007960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:40
chr2	90007961	.	T	.	.	PASS	END=90008013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:49
chr2	90008014	.	A	.	.	PASS	END=90008145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:53
chr2	90008146	.	A	.	.	PASS	END=90008154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:52
chr2	90024681	.	C	.	.	LowGQX	END=90024710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	90024711	.	G	.	.	LowGQX	END=90024777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:23
chr2	90024778	.	A	.	.	LowGQX	.	GT	./.
chr2	90024779	.	G	.	.	LowGQX	END=90024812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:29
chr2	90024813	.	A	.	33	LowGQX	DP=4;MQ=29;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:29:3
chr2	90024814	.	A	.	.	LowGQX	END=90024817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:24
chr2	90024818	.	C	.	.	LowGQX	.	GT	./.
chr2	90024819	.	A	.	.	LowGQX	END=90024833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:41
chr2	90024834	.	A	.	.	LowGQX	.	GT	./.
chr2	90024835	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:41
chr2	90025201	.	G	.	.	LowGQX	END=90025223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	90025224	.	G	.	.	LowGQX	.	GT	./.
chr2	90025225	.	A	.	.	LowGQX	END=90025371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	90025372	.	T	.	.	LowGQX	END=90025512	GT	./.
chr2	90043556	.	C	.	.	LowGQX	END=90043663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:39
chr2	90043664	.	C	.	.	LowGQX	END=90043670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:34
chr2	90043671	.	T	.	.	LowGQX	.	GT	./.
chr2	90043672	.	G	.	.	LowGQX	END=90043679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:34
chr2	90043680	.	T	.	.	LowGQX	.	GT	./.
chr2	90043681	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:34
chr2	90043682	.	C	.	.	LowGQX	.	GT	./.
chr2	90043683	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:34
chr2	90043684	.	T	.	.	LowGQX	.	GT	./.
chr2	90043685	.	G	.	.	LowGQX	END=90043698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:34
chr2	90043699	.	A	.	.	LowGQX;LowMQ	END=90043710	GT	./.
chr2	90044128	.	G	.	.	LowGQX	END=90044318	GT	./.
chr2	90044319	.	C	.	.	LowGQX	END=90044439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:52
chr2	90060415	.	G	.	.	LowGQX	END=90060592	GT	./.
chr2	90060699	.	G	.	.	LowGQX	.	GT	./.
chr2	90060700	.	C	.	.	LowGQX	END=90060713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	90060714	.	A	.	.	LowGQX	.	GT	./.
chr2	90060715	.	T	.	.	LowGQX	END=90060736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	90060737	.	C	.	.	LowGQX	.	GT	./.
chr2	90060738	.	T	.	.	LowGQX	END=90060753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	90060754	.	C	.	.	LowGQX	.	GT	./.
chr2	90060755	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr2	90060756	.	A	.	.	LowGQX	END=90060758	GT	./.
chr2	90060759	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr2	90060760	.	A	.	.	LowGQX	.	GT	./.
chr2	90060761	.	G	.	.	LowGQX	END=90060768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	90060769	.	C	.	.	LowGQX	.	GT	./.
chr2	90060770	.	C	.	.	LowGQX	END=90060773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	90060774	.	A	.	.	LowGQX	.	GT	./.
chr2	90060775	.	C	.	.	LowGQX	END=90060779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	90060780	.	C	.	.	LowGQX	.	GT	./.
chr2	90060781	.	G	.	.	LowGQX	END=90060783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	90060784	.	C	.	.	LowGQX	.	GT	./.
chr2	90060785	.	C	.	.	LowGQX	END=90060787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	90060788	.	T	.	.	LowGQX	END=90060831	GT	./.
chr2	90060832	.	A	.	.	LowGQX	END=90060842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	90060843	.	A	.	.	LowGQX	.	GT	./.
chr2	90060844	.	A	.	.	LowGQX	END=90060853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	90060854	.	C	.	.	LowGQX	END=90060855	GT	./.
chr2	90060856	.	A	.	.	LowGQX	END=90060858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	90060859	.	A	.	.	LowGQX	.	GT	./.
chr2	90060860	.	T	.	.	LowGQX	END=90060870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	90060871	.	C	.	.	LowGQX	.	GT	./.
chr2	90060872	.	C	.	.	LowGQX	END=90060900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	90060901	.	G	.	.	LowGQX	.	GT	./.
chr2	90060902	.	C	.	.	LowGQX	END=90060909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	90060910	.	C	.	.	LowGQX	.	GT	./.
chr2	90060911	.	T	.	.	LowGQX	END=90060913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	90060914	.	G	.	.	LowGQX	.	GT	./.
chr2	90060915	.	A	.	.	LowGQX	END=90060929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	90060930	.	A	.	.	LowGQX	.	GT	./.
chr2	90060931	.	C	.	.	LowGQX	END=90060949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	90060950	.	T	.	.	LowGQX	.	GT	./.
chr2	90060951	.	G	.	.	LowGQX	END=90060952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	90060953	.	A	.	.	LowGQX	.	GT	./.
chr2	90060954	.	G	.	.	LowGQX	END=90060955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	90060956	.	T	.	.	LowGQX	.	GT	./.
chr2	90060957	.	G	.	.	LowGQX	END=90060958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	90060959	.	T	.	.	LowGQX	.	GT	./.
chr2	90060960	.	G	.	.	LowGQX	END=90060981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	90060982	.	G	.	.	LowGQX	END=90061001	GT	./.
chr2	90077751	.	T	.	.	LowGQX	END=90077850	GT	./.
chr2	90078012	.	G	.	.	LowGQX	END=90078203	GT	./.
chr2	90078204	.	G	.	.	LowGQX	END=90078230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	90078231	.	A	.	.	LowGQX	.	GT	./.
chr2	90078232	.	C	.	.	LowGQX	END=90078236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	90078237	.	T	.	.	LowGQX	.	GT	./.
chr2	90078238	.	T	.	.	LowGQX	END=90078288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	90078289	.	G	.	.	LowGQX	.	GT	./.
chr2	90078290	.	T	.	.	LowGQX	END=90078311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	90108504	.	A	.	.	LowGQX	END=90108603	GT	./.
chr2	90108784	.	G	.	.	LowGQX	END=90109082	GT	./.
chr2	90121635	.	A	.	.	PASS	END=90121674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:42
chr2	90121675	.	T	C	4461.01	PASS	DP=159;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=10.5674;MQ=42;MQ0=9;QD=28.06;SB=-2277.07	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,159:159:99:4461,349,0:42:99:1.000
chr2	90121676	.	G	.	.	PASS	END=90121734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:41
chr2	90121837	.	G	.	.	PASS	END=90121855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:59
chr2	90121856	.	A	.	.	PASS	END=90121932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	90121933	.	A	.	.	PASS	END=90121975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:59
chr2	90121976	.	T	.	.	PASS	END=90122023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:45
chr2	90122024	.	C	.	.	PASS	END=90122126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:38
chr2	90122127	.	T	.	.	PASS	END=90122133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:38
chr2	90139082	.	A	.	.	PASS	END=90139115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:285:99:51
chr2	90139116	.	G	A	1177.46	PASS	BaseQRankSum=0.416;DP=280;Dels=0.00;FS=6.012;HRun=0;HaplotypeScore=22.7158;MQ=51;MQ0=3;MQRankSum=-10.419;QD=4.21;ReadPosRankSum=2.126;SB=-628.04	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:198,79:280:99:1207,0,5082:51:99:0.285
chr2	90139117	.	G	.	.	PASS	END=90139149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:48
chr2	90139150	.	T	.	.	PASS	END=90139181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:46
chr2	90139284	.	G	.	.	PASS	END=90139341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:38
chr2	90139342	.	G	.	.	PASS	END=90139356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:50
chr2	90139357	.	T	.	.	PASS	END=90139430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:54
chr2	90139431	.	T	.	.	PASS	END=90139512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:44
chr2	90139513	.	T	.	.	PASS	END=90139580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:39
chr2	90153719	.	T	.	.	LowGQX	END=90153734	GT	./.
chr2	90153735	.	A	.	.	LowGQX	END=90153792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:22
chr2	90153793	.	G	.	.	LowGQX	END=90153818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:21
chr2	90153951	.	T	.	.	LowGQX;LowMQ	END=90153977	GT	./.
chr2	90153978	.	T	.	.	LowGQX;LowMQ	END=90153994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:19
chr2	90153995	.	C	.	.	LowGQX	END=90153997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:24
chr2	90153998	.	G	.	36.01	LowGQX	DP=4;MQ=24;MQ0=2	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:24:6
chr2	90153999	.	C	.	.	LowGQX	END=90154011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:24
chr2	90154012	.	G	.	.	LowGQX	END=90154018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:12:33
chr2	90154019	.	G	.	.	LowGQX	END=90154025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:32
chr2	90154026	.	G	.	.	LowGQX	END=90154031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:34
chr2	90154032	.	C	.	.	PASS	END=90154037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:34
chr2	90154038	.	C	.	.	PASS	END=90154072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:34
chr2	90154073	.	G	.	.	PASS	END=90154075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:36
chr2	90154076	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:19:31:37
chr2	90154077	.	G	.	.	PASS	END=90154100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:37
chr2	90154101	.	C	.	.	PASS	END=90154102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:63:38
chr2	90154103	.	C	.	.	PASS	END=90154116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:38
chr2	90154117	.	C	.	.	PASS	END=90154128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:37
chr2	90154129	.	C	.	.	PASS	END=90154167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:35
chr2	90154168	.	T	.	.	PASS	END=90154229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:29
chr2	90154230	.	A	.	.	PASS	END=90154254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:26
chr2	90154255	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:76:64:26
chr2	90154256	.	C	.	.	PASS	END=90154260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:26
chr2	90192925	.	G	.	.	PASS	END=90193024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:37
chr2	90193117	.	T	.	.	PASS	END=90193236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:29
chr2	90193237	.	T	.	.	PASS	END=90193288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:34
chr2	90193289	.	T	.	.	PASS	END=90193426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:26
chr2	90198633	.	C	.	.	LowMQ	END=90198636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:33:8
chr2	90198637	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:142:21:8
chr2	90198638	.	G	.	.	LowMQ	END=90198646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:30:8
chr2	90198647	.	C	.	.	LowMQ	END=90198650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:33:8
chr2	90198651	.	A	.	.	LowMQ	END=90198659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:30:8
chr2	90198660	.	C	.	.	LowMQ	END=90198664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:33:8
chr2	90198665	.	T	.	.	LowMQ	END=90198673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:39:8
chr2	90198674	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:159:22:9
chr2	90198675	.	A	.	.	LowMQ	END=90198676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:36:9
chr2	90198677	.	C	.	.	LowMQ	END=90198679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:48:9
chr2	90198680	.	A	.	.	LowMQ	END=90198682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:42:9
chr2	90198683	.	C	.	.	LowMQ	END=90198691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:57:10
chr2	90198692	.	A	.	.	LowMQ	END=90198701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:69:11
chr2	90198702	.	A	.	.	LowMQ	END=90198708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:84:12
chr2	90198709	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:158:69:12
chr2	90198710	.	C	.	.	LowMQ	END=90198792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:78:12
chr2	90198887	.	A	.	.	PASS	END=90199011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:33
chr2	90199012	.	A	.	.	PASS	END=90199054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:34
chr2	90199055	.	T	.	.	PASS	END=90199190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:38
chr2	90211714	.	T	.	.	LowGQX	END=90211813	GT	./.
chr2	90211957	.	G	.	.	LowGQX	END=90212083	GT	./.
chr2	90212084	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:48
chr2	90212085	.	A	.	.	LowGQX	.	GT	./.
chr2	90212086	.	C	.	.	LowGQX	END=90212150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	90212151	.	G	.	.	LowGQX	.	GT	./.
chr2	90212152	.	T	.	.	LowGQX	END=90212253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	90229042	.	G	.	.	PASS	END=90229066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:54
chr2	90229067	.	G	.	.	PASS	END=90229141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:56
chr2	90229235	.	G	.	.	PASS	END=90229264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr2	90229265	.	T	.	.	PASS	END=90229292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr2	90229293	.	G	.	.	PASS	END=90229301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr2	90229302	.	T	.	.	PASS	END=90229317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	90229318	.	G	.	.	PASS	END=90229329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	90229330	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:22:60
chr2	90229331	.	A	.	.	PASS	END=90229341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	90229342	.	T	.	.	PASS	END=90229351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	90229352	.	T	.	.	PASS	END=90229353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	90229354	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:21:60
chr2	90229355	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr2	90229356	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	90229357	.	G	.	.	PASS	END=90229358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	90229359	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	90229360	.	G	.	.	PASS	END=90229362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	90229363	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	90229364	.	C	.	.	PASS	END=90229372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	90229373	.	T	.	.	LowGQX	END=90229382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	90229383	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr2	90229384	.	C	.	.	LowGQX	END=90229390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	90229391	.	T	.	.	LowGQX	END=90229393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	90229394	.	G	.	.	LowGQX	END=90229401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	90229402	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr2	90229403	.	G	.	.	LowGQX	END=90229405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr2	90229406	.	T	.	.	LowGQX	END=90229408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr2	90229409	.	C	.	.	LowGQX	END=90229410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr2	90229411	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	90229412	.	C	.	.	LowGQX	END=90229418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	90229419	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr2	90229420	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr2	90229421	.	T	.	.	LowGQX	END=90229423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr2	90229424	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:9:60
chr2	90229425	.	C	.	.	LowGQX	END=90229426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	90229427	.	A	.	.	LowGQX	END=90229428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr2	90229429	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr2	90229430	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr2	90229431	.	T	.	.	LowGQX	END=90229433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	90229434	.	G	.	.	LowGQX	END=90229435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:12:60
chr2	90229436	.	G	.	.	LowGQX	END=90229439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	90229440	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr2	90229441	.	G	.	.	LowGQX	END=90229444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	90229445	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:1:60
chr2	90229446	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr2	90229447	.	T	.	.	LowGQX	END=90229450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr2	90229451	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr2	90229452	.	C	.	.	LowGQX	END=90229454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	90229455	.	A	.	.	LowGQX	END=90229462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	90229463	.	C	.	.	LowGQX	END=90229468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr2	90229469	.	A	.	.	LowGQX	END=90229471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	90229472	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:12:60
chr2	90229473	.	T	.	.	LowGQX	END=90229476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	90229477	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr2	90229478	.	C	.	.	LowGQX	END=90229480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	90229481	.	A	.	.	LowGQX	END=90229486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr2	90229487	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:21:60
chr2	90229488	.	A	.	.	LowGQX	END=90229491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr2	90229492	.	T	.	.	LowGQX	END=90229500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	90229501	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr2	90229502	.	T	.	.	LowGQX	END=90229504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	90229505	.	T	.	.	LowGQX	END=90229507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:15:60
chr2	90229508	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr2	90229509	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr2	90229510	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:9:60
chr2	90229511	.	A	.	.	LowGQX	END=90229518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	90229519	.	C	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr2	90229520	.	T	.	.	LowGQX	END=90229522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	90229523	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr2	90229524	.	G	.	.	LowGQX	END=90229525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	90229526	.	T	.	.	LowGQX	END=90229531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	90248897	.	G	.	.	PASS	END=90248964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	90248965	.	T	.	.	PASS	END=90248996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	90249099	.	G	.	.	PASS	END=90249133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	90249134	.	A	.	.	PASS	END=90249237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	90249238	.	C	.	.	PASS	END=90249391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	90249392	.	C	.	.	PASS	END=90249401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	90259751	.	G	.	.	PASS	END=90259759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:58
chr2	90259760	.	A	T	243.13	LowQD;SB	BaseQRankSum=1.447;DP=164;Dels=0.00;FS=10.146;HRun=0;HaplotypeScore=17.1393;MQ=58;MQ0=0;MQRankSum=-3.056;QD=1.48;ReadPosRankSum=-1.181;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:143,21:164:99:273,0,3609:58:99:0.128
chr2	90259761	.	G	.	.	PASS	END=90259775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:58
chr2	90259776	.	G	A	24.60	LowGQX;LowQD;SB	BaseQRankSum=2.032;DP=154;Dels=0.00;FS=11.846;HRun=0;HaplotypeScore=13.3613;MQ=59;MQ0=0;MQRankSum=-3.159;QD=0.16;ReadPosRankSum=-1.252;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:141,12:154:54.58:55,0,3653:59:25:0.078
chr2	90259777	.	G	.	.	PASS	END=90259806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:59
chr2	90259807	.	C	.	.	PASS	END=90259850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	90259952	.	G	.	.	PASS	END=90259981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:84:60
chr2	90259982	.	T	.	.	PASS	END=90259987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	90259988	.	T	.	.	PASS	END=90259998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:81:60
chr2	90259999	.	T	.	.	PASS	END=90260013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr2	90260014	.	C	.	.	PASS	END=90260048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:60:60
chr2	90260049	.	T	.	.	PASS	END=90260062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr2	90260063	.	G	.	.	PASS	END=90260069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr2	90260070	.	A	.	.	PASS	END=90260081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	90260082	.	C	.	.	PASS	END=90260089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr2	90260090	.	G	.	.	PASS	END=90260101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	90260102	.	C	.	.	PASS	END=90260103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:54:60
chr2	90260104	.	G	.	.	PASS	END=90260115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	90260116	.	A	.	.	PASS	END=90260147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr2	90260148	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:71:60
chr2	90260149	.	C	.	.	PASS	END=90260197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:59
chr2	90260198	.	C	.	.	PASS	END=90260236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:96:60
chr2	90260237	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:76:60
chr2	90260238	.	A	.	.	PASS	END=90260248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	90273623	.	C	.	.	LowGQX	END=90273782	GT	./.
chr2	90273925	.	T	.	.	LowGQX;LowMQ	END=90274244	GT	./.
chr2	90537787	.	A	.	.	LowGQX;LowMQ	END=90538146	GT	./.
chr2	90538229	.	G	.	.	LowGQX	END=90538388	GT	./.
chr2	92129210	.	A	.	.	LowGQX	END=92129233	GT	./.
chr2	92129234	.	G	.	.	LowGQX	END=92129257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr2	92129258	.	G	.	.	LowGQX	.	GT	./.
chr2	92129259	.	T	.	.	LowGQX	END=92129266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr2	92129267	.	T	.	.	LowGQX	.	GT	./.
chr2	92129268	.	T	.	.	LowGQX	END=92129274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr2	92129275	.	A	.	.	LowGQX	.	GT	./.
chr2	92129276	.	T	.	.	LowGQX	END=92129277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr2	92129278	.	T	.	.	LowGQX	.	GT	./.
chr2	92129279	.	T	.	.	LowGQX	END=92129291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr2	92129292	.	A	.	.	LowGQX	END=92129293	GT	./.
chr2	92129294	.	G	.	.	LowGQX	END=92129344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr2	92129345	.	A	.	32.99	LowGQX	DP=2;MQ=24;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:24:3
chr2	92129346	.	C	.	.	LowGQX	END=92129386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr2	92129387	.	T	.	.	LowGQX	.	GT	./.
chr2	92129388	.	G	.	.	LowGQX	END=92129405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr2	92129406	.	T	.	.	LowGQX	.	GT	./.
chr2	92129407	.	T	.	.	LowGQX	END=92129412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr2	92129413	.	T	.	.	LowGQX	.	GT	./.
chr2	92129414	.	G	.	.	LowGQX	END=92129443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr2	92129444	.	A	.	.	LowGQX	.	GT	./.
chr2	92129445	.	G	.	.	LowGQX	END=92129447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr2	92129448	.	A	.	.	LowGQX	END=92129791	GT	./.
chr2	92222512	.	T	.	.	LowGQX;LowMQ	END=92222851	GT	./.
chr2	92222909	.	G	.	.	LowGQX;LowMQ	END=92223059	GT	./.
chr2	92231099	.	C	.	.	LowGQX	END=92231452	GT	./.
chr2	92231726	.	G	.	.	LowGQX	END=92231898	GT	./.
chr2	95480776	.	T	.	.	LowGQX	END=95481750	GT	./.
chr2	95482918	.	C	.	.	LowGQX	END=95483154	GT	./.
chr2	95537323	.	C	.	.	LowGQX	END=95537584	GT	./.
chr2	95537585	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95537586	.	A	.	.	LowGQX	.	GT	./.
chr2	95537587	.	C	.	.	LowGQX	END=95537703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95537704	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	95537705	.	G	.	.	LowGQX	END=95537741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95537742	.	A	.	.	LowGQX	.	GT	./.
chr2	95537743	.	C	.	.	LowGQX	END=95537751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95537752	.	A	.	.	LowGQX	.	GT	./.
chr2	95537753	.	C	.	.	LowGQX	END=95537790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95537791	.	T	.	10.70	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:0.05:60:0
chr2	95537792	.	G	.	.	LowGQX	END=95537802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	95537803	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	95537804	.	G	.	.	LowGQX	END=95537811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	95537812	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	95537813	.	G	.	.	LowGQX	.	GT	./.
chr2	95537814	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr2	95537815	.	T	.	.	LowGQX	.	GT	./.
chr2	95537816	.	G	.	.	LowGQX	END=95537817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95537818	.	T	.	.	LowGQX	.	GT	./.
chr2	95537819	.	G	.	.	LowGQX	END=95537823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95537824	.	T	.	.	LowGQX	.	GT	./.
chr2	95538561	.	G	.	.	LowGQX	END=95538653	GT	./.
chr2	95538654	.	G	.	.	LowGQX	END=95538708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95538709	.	G	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.66;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:60:5:0.333
chr2	95538710	.	C	.	.	LowGQX	END=95538741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	95539251	.	G	.	.	LowGQX	END=95539350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95539708	.	A	.	.	LowGQX	END=95539746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95539747	.	T	.	.	LowGQX	END=95539795	GT	./.
chr2	95539796	.	A	.	.	LowGQX	END=95539809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95539810	.	A	.	.	LowGQX	.	GT	./.
chr2	95539811	.	C	.	.	LowGQX	END=95539839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95539840	.	A	.	.	LowGQX	.	GT	./.
chr2	95539841	.	C	.	.	LowGQX	END=95539851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95539852	.	A	.	.	LowGQX	.	GT	./.
chr2	95539853	.	G	.	.	LowGQX	END=95539855;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95540519	.	A	.	.	LowGQX	END=95540745	GT	./.
chr2	95541331	.	A	.	.	LowGQX	END=95541332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95541333	.	A	.	.	LowGQX	.	GT	./.
chr2	95541334	.	C	.	.	LowGQX	END=95541489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95542296	.	A	.	.	LowGQX	END=95542298	GT	./.
chr2	95542299	.	C	.	.	LowGQX	END=95542314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95542315	.	A	.	.	LowGQX	END=95542316	GT	./.
chr2	95542317	.	G	.	.	LowGQX	END=95542320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95542321	.	T	.	.	LowGQX	.	GT	./.
chr2	95542322	.	G	.	.	LowGQX	END=95542334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95542335	.	A	.	.	LowGQX	.	GT	./.
chr2	95542336	.	C	.	.	LowGQX	END=95542342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95542343	.	G	.	.	LowGQX	.	GT	./.
chr2	95542344	.	C	.	.	LowGQX	END=95542346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95542347	.	G	.	.	LowGQX	.	GT	./.
chr2	95542348	.	A	.	.	LowGQX	END=95542349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95542350	.	A	.	.	LowGQX	.	GT	./.
chr2	95542351	.	A	.	.	LowGQX	END=95542358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95542359	.	G	.	.	LowGQX	.	GT	./.
chr2	95542360	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95542361	.	A	.	.	LowGQX	END=95542362	GT	./.
chr2	95542363	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95542364	.	G	.	.	LowGQX	END=95542365	GT	./.
chr2	95542366	.	A	.	.	LowGQX	END=95542372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95542373	.	C	.	.	LowGQX	.	GT	./.
chr2	95542374	.	C	.	.	LowGQX	END=95542376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95542377	.	C	.	.	LowGQX	.	GT	./.
chr2	95542378	.	G	.	.	LowGQX	END=95542388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95542389	.	G	.	.	LowGQX	.	GT	./.
chr2	95542390	.	A	.	.	LowGQX	END=95542394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95542395	.	C	.	.	LowGQX	.	GT	./.
chr2	95542396	.	A	.	.	LowGQX	END=95542399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95542400	.	G	.	.	LowGQX	END=95542401	GT	./.
chr2	95542402	.	G	.	.	LowGQX	END=95542403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95542404	.	C	.	.	LowGQX	.	GT	./.
chr2	95542405	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95542406	.	G	.	.	LowGQX	.	GT	./.
chr2	95542407	.	G	.	.	LowGQX	END=95542411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95542412	.	G	.	.	LowGQX	.	GT	./.
chr2	95542413	.	G	.	.	LowGQX	END=95542425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95542426	.	T	.	.	LowGQX	.	GT	./.
chr2	95542427	.	G	.	.	LowGQX	END=95542458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	95542459	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	95542460	.	C	.	.	LowGQX	END=95542516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	95691535	.	G	.	.	LowGQX	END=95691634	GT	./.
chr2	95713702	.	A	.	.	LowGQX	END=95713873	GT	./.
chr2	95715324	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr2	95715325	.	G	T	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.9466;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.05;ReadPosRankSum=0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.29:30,0,70:60:3:0.333
chr2	95715326	.	G	.	.	LowGQX	END=95715327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	95715328	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	95715329	.	G	.	.	LowGQX	END=95715330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	95715331	.	A	.	.	LowGQX	END=95715332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	95715333	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	95715334	.	C	.	.	LowGQX	END=95715336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	95715337	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	95715338	.	C	.	.	LowGQX	END=95715345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	95715346	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	95715347	.	G	.	.	LowGQX	END=95715354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	95715355	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	95715356	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	95715357	.	T	.	.	LowGQX	END=95715367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	95715368	.	G	.	.	LowGQX	END=95715370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	95715371	.	T	.	.	LowGQX	END=95715382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	95715383	.	G	.	.	LowGQX	END=95715410;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	95715411	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	95715412	.	C	.	.	LowGQX	END=95715414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	95715415	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	95715416	.	A	.	.	LowGQX	END=95715423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	95715424	.	G	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	95715425	.	C	.	.	LowGQX	END=95715453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr2	95719114	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95719115	.	C	.	.	LowGQX	.	GT	./.
chr2	95719116	.	T	.	.	LowGQX	END=95719117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95719118	.	G	.	.	LowGQX	END=95719119	GT	./.
chr2	95719120	.	T	.	.	LowGQX	END=95719121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95719122	.	C	.	.	LowGQX	.	GT	./.
chr2	95719123	.	C	.	.	LowGQX	END=95719126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95719127	.	T	.	.	LowGQX	.	GT	./.
chr2	95719128	.	G	.	.	LowGQX	END=95719130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95719131	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr2	95719132	.	T	.	.	LowGQX	END=95719133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95719134	.	C	.	.	LowGQX	.	GT	./.
chr2	95719135	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95719136	.	A	.	.	LowGQX	.	GT	./.
chr2	95719137	.	C	.	.	LowGQX	END=95719139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95719140	.	A	.	.	LowGQX	END=95719213	GT	./.
chr2	95753100	.	G	.	.	LowGQX	END=95753120	GT	./.
chr2	95753121	.	A	.	.	LowGQX	END=95753127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95753128	.	A	.	.	LowGQX	.	GT	./.
chr2	95753129	.	C	.	.	LowGQX	END=95753192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95753193	.	A	.	.	LowGQX	.	GT	./.
chr2	95753194	.	C	.	.	LowGQX	END=95753238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95753239	.	A	.	.	LowGQX	.	GT	./.
chr2	95753240	.	C	.	.	LowGQX	END=95753269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95753270	.	C	.	.	LowGQX	END=95753271	GT	./.
chr2	95753272	.	C	.	.	LowGQX	END=95753290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95753291	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	95753292	.	A	.	.	LowGQX	END=95753328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95756129	.	A	.	.	LowGQX	END=95756269	GT	./.
chr2	95766201	.	T	.	.	LowGQX	END=95766300	GT	./.
chr2	95766561	.	A	.	.	LowGQX	END=95766562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95766563	.	A	.	.	LowGQX	.	GT	./.
chr2	95766564	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95766565	.	A	.	.	LowGQX	END=95766566	GT	./.
chr2	95766567	.	T	.	.	LowGQX	END=95766572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95766573	.	A	.	.	LowGQX	.	GT	./.
chr2	95766574	.	T	.	.	LowGQX	END=95766589;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95766590	.	T	.	.	LowGQX	END=95766615	GT	./.
chr2	95766616	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95766617	.	T	.	.	LowGQX	.	GT	./.
chr2	95766618	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95766619	.	G	.	.	LowGQX	END=95766621	GT	./.
chr2	95766622	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95766623	.	A	.	.	LowGQX	.	GT	./.
chr2	95766624	.	C	.	.	LowGQX	END=95766627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95766628	.	T	.	.	LowGQX	.	GT	./.
chr2	95766629	.	C	.	.	LowGQX	END=95766631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95766632	.	T	.	.	LowGQX	.	GT	./.
chr2	95766633	.	T	.	.	LowGQX	END=95766634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95766635	.	T	.	.	LowGQX	.	GT	./.
chr2	95766636	.	T	.	.	LowGQX	END=95766641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95766642	.	G	.	.	LowGQX	.	GT	./.
chr2	95766643	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95766644	.	A	.	.	LowGQX	.	GT	./.
chr2	95766645	.	A	.	.	LowGQX	END=95766650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95766651	.	A	.	.	LowGQX	.	GT	./.
chr2	95766652	.	T	.	.	LowGQX	END=95766654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95766655	.	T	.	.	LowGQX	END=95766656	GT	./.
chr2	95766657	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95766658	.	T	.	.	LowGQX	.	GT	./.
chr2	95766659	.	C	.	.	LowGQX	END=95766660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95767396	.	T	.	.	LowGQX	END=95767495	GT	./.
chr2	95770269	.	T	.	.	LowGQX	END=95770477	GT	./.
chr2	95772136	.	G	.	.	LowGQX	END=95772235	GT	./.
chr2	95773918	.	A	.	.	LowGQX	END=95773924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95773925	.	C	.	.	LowGQX	.	GT	./.
chr2	95773926	.	A	.	.	LowGQX	END=95773929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95773930	.	A	.	.	LowGQX	.	GT	./.
chr2	95773931	.	C	.	.	LowGQX	END=95773943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95773944	.	G	.	.	LowGQX	.	GT	./.
chr2	95773945	.	G	.	.	LowGQX	END=95773954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95773955	.	A	.	.	LowGQX	.	GT	./.
chr2	95773956	.	T	.	.	LowGQX	END=95773984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95773985	.	C	.	.	LowGQX	.	GT	./.
chr2	95773986	.	G	.	.	LowGQX	END=95774017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95774018	.	T	.	.	LowGQX	.	GT	./.
chr2	95774019	.	C	.	.	LowGQX	END=95774097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95774098	.	T	.	.	LowGQX	END=95774155	GT	./.
chr2	95775659	.	A	.	.	LowGQX	END=95775788	GT	./.
chr2	95780809	.	A	.	.	LowGQX	END=95780950	GT	./.
chr2	95783548	.	C	.	.	LowGQX	END=95783700	GT	./.
chr2	95787398	.	G	.	.	LowGQX	END=95787414	GT	./.
chr2	95787415	.	C	.	.	LowGQX	END=95787418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95787419	.	A	.	.	LowGQX	.	GT	./.
chr2	95787420	.	G	.	.	LowGQX	END=95787431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95787432	.	A	.	.	LowGQX	.	GT	./.
chr2	95787433	.	C	.	.	LowGQX	END=95787476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95787477	.	A	.	.	LowGQX	.	GT	./.
chr2	95787478	.	C	.	.	LowGQX	END=95787483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95787484	.	G	.	.	LowGQX	.	GT	./.
chr2	95787485	.	T	.	.	LowGQX	END=95787529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95787530	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	95787531	.	C	.	.	LowGQX	END=95787557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95815025	.	A	.	.	LowGQX	END=95815073	GT	./.
chr2	95815074	.	A	.	.	LowGQX	END=95815108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95815109	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	95815110	.	A	.	.	LowGQX	END=95815175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95815176	.	C	.	.	LowGQX	.	GT	./.
chr2	95815177	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	95815178	.	C	.	.	LowGQX	END=95815200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95815201	.	A	.	.	LowGQX	.	GT	./.
chr2	95815202	.	G	.	.	LowGQX	END=95815206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95815207	.	C	G	9.80	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=4.90;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:39,3,0:60:3:1.000
chr2	95815208	.	T	.	.	LowGQX	END=95815234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95815235	.	A	.	.	LowGQX	.	GT	./.
chr2	95815236	.	T	.	.	LowGQX	END=95815247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95815248	.	T	.	.	LowGQX	.	GT	./.
chr2	95815249	.	C	.	.	LowGQX	END=95815253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95815254	.	T	.	.	LowGQX	.	GT	./.
chr2	95815255	.	G	.	.	LowGQX	END=95815314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95815315	.	C	.	.	LowGQX	END=95816014	GT	./.
chr2	95818417	.	A	.	.	LowGQX	END=95818516	GT	./.
chr2	95818876	.	A	.	.	LowGQX	END=95818915	GT	./.
chr2	95818916	.	T	.	.	LowGQX	END=95819004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95823091	.	C	.	.	LowGQX	END=95823190	GT	./.
chr2	95824605	.	C	.	.	LowGQX	END=95824728	GT	./.
chr2	95830747	.	A	.	.	LowGQX	END=95830846	GT	./.
chr2	95841879	.	C	.	.	LowGQX	END=95841982	GT	./.
chr2	95841983	.	G	.	.	LowGQX	END=95841984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95841985	.	C	.	.	LowGQX	.	GT	./.
chr2	95841986	.	T	.	.	LowGQX	END=95841988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95841989	.	G	.	.	LowGQX	.	GT	./.
chr2	95841990	.	A	.	.	LowGQX	END=95841991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95841992	.	C	.	.	LowGQX	.	GT	./.
chr2	95841993	.	A	.	.	LowGQX	END=95841994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95841995	.	C	.	.	LowGQX	.	GT	./.
chr2	95841996	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95841997	.	G	.	.	LowGQX	END=95841998	GT	./.
chr2	95841999	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95842000	.	G	.	.	LowGQX	.	GT	./.
chr2	95842001	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95842002	.	C	.	.	LowGQX	.	GT	./.
chr2	95842003	.	A	.	.	LowGQX	END=95842004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95842005	.	G	.	.	LowGQX	.	GT	./.
chr2	95842006	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95842007	.	G	.	.	LowGQX	.	GT	./.
chr2	95842008	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95842009	.	G	.	.	LowGQX	END=95842011	GT	./.
chr2	95842012	.	G	.	.	LowGQX	END=95842017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95842018	.	T	.	.	LowGQX	END=95842021	GT	./.
chr2	95842022	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95842023	.	T	.	.	LowGQX	.	GT	./.
chr2	95842024	.	T	.	.	LowGQX	END=95842025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95842026	.	C	.	.	LowGQX	END=95842028	GT	./.
chr2	95842029	.	A	.	.	LowGQX	END=95842033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95842034	.	C	.	.	LowGQX	.	GT	./.
chr2	95842035	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95842036	.	C	.	.	LowGQX	END=95842037	GT	./.
chr2	95842038	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843226	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843227	.	G	.	.	LowGQX	END=95843229	GT	./.
chr2	95843230	.	A	.	.	LowGQX	END=95843234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843235	.	T	.	.	LowGQX	.	GT	./.
chr2	95843236	.	G	.	.	LowGQX	END=95843238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843239	.	A	.	.	LowGQX	END=95843240	GT	./.
chr2	95843241	.	T	.	.	LowGQX	END=95843246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843247	.	A	.	.	LowGQX	END=95843250	GT	./.
chr2	95843251	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843252	.	G	.	.	LowGQX	.	GT	./.
chr2	95843253	.	C	.	.	LowGQX	END=95843254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843255	.	G	.	.	LowGQX	END=95843257	GT	./.
chr2	95843258	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843259	.	T	.	.	LowGQX	.	GT	./.
chr2	95843260	.	T	.	.	LowGQX	END=95843264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843265	.	C	.	.	LowGQX	.	GT	./.
chr2	95843266	.	A	.	.	LowGQX	END=95843268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843269	.	T	.	.	LowGQX	END=95843270	GT	./.
chr2	95843271	.	A	.	.	LowGQX	END=95843274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843275	.	G	.	.	LowGQX	.	GT	./.
chr2	95843276	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843277	.	G	.	.	LowGQX	.	GT	./.
chr2	95843278	.	G	.	.	LowGQX	END=95843285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843286	.	T	.	.	LowGQX	END=95843300	GT	./.
chr2	95843301	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843302	.	G	.	.	LowGQX	.	GT	./.
chr2	95843303	.	G	.	.	LowGQX	END=95843307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843308	.	C	.	.	LowGQX	.	GT	./.
chr2	95843309	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843310	.	A	.	.	LowGQX	END=95843313	GT	./.
chr2	95843314	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843315	.	G	.	.	LowGQX	.	GT	./.
chr2	95843316	.	A	.	.	LowGQX	END=95843317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843318	.	G	.	.	LowGQX	END=95843320	GT	./.
chr2	95843321	.	A	.	.	LowGQX	END=95843323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843324	.	C	.	.	LowGQX	.	GT	./.
chr2	95843325	.	T	.	.	LowGQX	END=95843326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843327	.	G	.	.	LowGQX	.	GT	./.
chr2	95843328	.	A	.	.	LowGQX	END=95843329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843330	.	A	.	.	LowGQX	.	GT	./.
chr2	95843331	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843332	.	C	.	.	LowGQX	.	GT	./.
chr2	95843333	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843334	.	A	.	.	LowGQX	.	GT	./.
chr2	95843335	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843336	.	A	.	.	LowGQX	END=95843337	GT	./.
chr2	95843338	.	C	.	.	LowGQX	END=95843339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843340	.	G	.	.	LowGQX	END=95843342	GT	./.
chr2	95843343	.	T	.	.	LowGQX	END=95843349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843350	.	A	.	.	LowGQX	END=95843351	GT	./.
chr2	95843352	.	T	.	.	LowGQX	END=95843354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95843355	.	G	.	.	LowGQX	.	GT	./.
chr2	95843356	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95845902	.	A	.	.	LowGQX	END=95845980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	95845981	.	T	.	.	LowGQX	END=95846019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95846808	.	G	.	.	LowGQX	END=95847856	GT	./.
chr2	95940332	.	C	.	.	LowGQX	END=95940579	GT	./.
chr2	95941184	.	T	.	.	LowGQX	END=95941283	GT	./.
chr2	95941617	.	G	.	.	LowGQX	END=95941668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95941669	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	95941670	.	C	.	.	LowGQX	END=95941673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	95941674	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	95941675	.	C	.	.	LowGQX	END=95941693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95941694	.	C	A	9.80	LowGQ;LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=4.90;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,1:2:3.01:39,3,0:60:3:0.500
chr2	95941695	.	G	.	.	LowGQX	END=95941732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941733	.	T	.	.	LowGQX	END=95941739	GT	./.
chr2	95941740	.	G	.	.	LowGQX	END=95941741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941742	.	T	.	.	LowGQX	END=95941744	GT	./.
chr2	95941745	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941746	.	C	.	.	LowGQX	END=95941748	GT	./.
chr2	95941749	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941750	.	G	.	.	LowGQX	END=95941755	GT	./.
chr2	95941756	.	C	.	.	LowGQX	END=95941759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95941760	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	95941761	.	C	.	.	LowGQX	.	GT	./.
chr2	95941762	.	T	.	.	LowGQX	END=95941764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95941765	.	T	.	.	LowGQX	.	GT	./.
chr2	95941766	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95941767	.	C	.	.	LowGQX	.	GT	./.
chr2	95941768	.	T	.	.	LowGQX	END=95941769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95941770	.	C	.	.	LowGQX	END=95941775	GT	./.
chr2	95941776	.	C	.	.	LowGQX	END=95941781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95941782	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	95941783	.	C	.	.	LowGQX	.	GT	./.
chr2	95941784	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95941785	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	95941786	.	C	.	.	LowGQX	END=95941787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95941788	.	C	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	95941789	.	T	.	.	LowGQX	END=95941792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95941793	.	G	.	.	LowGQX	.	GT	./.
chr2	95941794	.	G	.	.	LowGQX	END=95941795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941796	.	G	.	.	LowGQX	.	GT	./.
chr2	95941797	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941798	.	C	.	.	LowGQX	END=95941800	GT	./.
chr2	95941801	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	95941802	.	T	.	.	LowGQX	END=95941803	GT	./.
chr2	95941804	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941805	.	A	.	.	LowGQX	END=95941806	GT	./.
chr2	95941807	.	A	.	.	LowGQX	END=95941808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941809	.	A	.	.	LowGQX	END=95941810	GT	./.
chr2	95941811	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941812	.	G	.	.	LowGQX	.	GT	./.
chr2	95941813	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941814	.	A	.	.	LowGQX	END=95941818	GT	./.
chr2	95941819	.	G	.	.	LowGQX	END=95941820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941821	.	G	.	.	LowGQX	END=95941827	GT	./.
chr2	95941828	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941829	.	G	.	.	LowGQX	END=95941831	GT	./.
chr2	95941832	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941833	.	G	.	.	LowGQX	END=95941834	GT	./.
chr2	95941835	.	G	.	.	LowGQX	END=95941836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941837	.	G	.	.	LowGQX	END=95941839	GT	./.
chr2	95941840	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941841	.	C	.	.	LowGQX	END=95941842	GT	./.
chr2	95941843	.	C	.	.	LowGQX	END=95941846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941847	.	T	.	.	LowGQX	.	GT	./.
chr2	95941848	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941849	.	G	.	.	LowGQX	END=95941851	GT	./.
chr2	95941852	.	T	.	.	LowGQX	END=95941854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941855	.	C	.	.	LowGQX	END=95941859	GT	./.
chr2	95941860	.	G	.	.	LowGQX	END=95941861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941862	.	T	.	.	LowGQX	END=95941863	GT	./.
chr2	95941864	.	A	.	.	LowGQX	END=95941865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941866	.	C	.	.	LowGQX	END=95941868	GT	./.
chr2	95941869	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941870	.	C	.	.	LowGQX	END=95941874	GT	./.
chr2	95941875	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941876	.	C	.	.	LowGQX	END=95941877	GT	./.
chr2	95941878	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95941879	.	C	.	.	LowGQX	END=95941882	GT	./.
chr2	95941973	.	A	.	.	LowGQX	END=95942097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95942324	.	G	.	.	LowGQX	END=95942381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95942382	.	A	.	.	LowGQX	.	GT	./.
chr2	95942383	.	G	.	.	LowGQX	END=95942423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95942655	.	A	.	.	LowGQX	END=95942669	GT	./.
chr2	95942670	.	G	.	.	LowGQX	END=95942760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95942761	.	A	.	.	LowGQX	END=95942787	GT	./.
chr2	95942788	.	G	.	.	LowGQX	END=95942814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95943110	.	A	.	.	LowGQX	END=95943316	GT	./.
chr2	95943606	.	C	.	.	LowGQX	END=95943684	GT	./.
chr2	95943685	.	C	.	.	LowGQX	END=95943690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95943691	.	A	.	.	LowGQX	.	GT	./.
chr2	95943692	.	C	.	.	LowGQX	END=95943765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95944451	.	A	.	.	LowGQX	END=95944452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95944453	.	T	.	.	LowGQX	END=95944550	GT	./.
chr2	95944731	.	A	.	.	LowGQX	END=95944734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95944735	.	C	.	.	LowGQX	.	GT	./.
chr2	95944736	.	T	.	.	LowGQX	END=95944738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95944739	.	A	.	.	LowGQX	.	GT	./.
chr2	95944740	.	G	.	.	LowGQX	END=95944743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95944744	.	G	.	.	LowGQX	.	GT	./.
chr2	95944745	.	C	.	.	LowGQX	END=95944753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95944754	.	A	.	.	LowGQX	END=95944769	GT	./.
chr2	95944770	.	G	.	.	LowGQX	END=95944776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95944777	.	C	.	.	LowGQX	.	GT	./.
chr2	95944778	.	T	.	.	LowGQX	END=95944788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95944789	.	T	.	.	LowGQX	END=95944790	GT	./.
chr2	95944791	.	C	.	.	LowGQX	END=95944798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95944799	.	T	.	.	LowGQX	.	GT	./.
chr2	95944800	.	G	.	.	LowGQX	END=95944808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95944809	.	T	.	.	LowGQX	.	GT	./.
chr2	95944810	.	T	.	.	LowGQX	END=95944815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95944816	.	T	.	.	LowGQX	.	GT	./.
chr2	95944817	.	G	.	.	LowGQX	END=95944831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95944832	.	A	.	.	LowGQX	.	GT	./.
chr2	95944833	.	G	.	.	LowGQX	END=95944837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95944838	.	T	.	.	LowGQX	.	GT	./.
chr2	95944839	.	G	.	.	LowGQX	END=95944870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95944871	.	T	.	.	LowGQX	.	GT	./.
chr2	95944872	.	G	.	.	LowGQX	END=95944879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95944880	.	A	.	.	LowGQX	.	GT	./.
chr2	95944881	.	C	.	.	LowGQX	END=95944894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95945591	.	A	.	.	LowGQX	END=95945747	GT	./.
chr2	95946988	.	A	.	.	LowGQX	END=95947003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95947004	.	G	.	.	LowGQX	.	GT	./.
chr2	95947005	.	C	.	.	LowGQX	END=95947025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95947026	.	C	.	.	LowGQX	.	GT	./.
chr2	95947027	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	95947028	.	T	.	.	LowGQX	.	GT	./.
chr2	95947029	.	C	.	.	LowGQX	END=95947046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947047	.	C	.	.	LowGQX	.	GT	./.
chr2	95947048	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947049	.	T	.	.	LowGQX	.	GT	./.
chr2	95947050	.	C	.	.	LowGQX	END=95947074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947075	.	C	.	.	LowGQX	.	GT	./.
chr2	95947076	.	T	.	.	LowGQX	END=95947078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947079	.	T	.	.	LowGQX	.	GT	./.
chr2	95947080	.	G	.	.	LowGQX	END=95947084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947085	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	95947086	.	G	.	.	LowGQX	END=95947106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947107	.	C	.	.	LowGQX	END=95947115	GT	./.
chr2	95947669	.	C	.	.	LowGQX	END=95947768	GT	./.
chr2	95947883	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947884	.	C	.	.	LowGQX	END=95947885	GT	./.
chr2	95947886	.	T	.	.	LowGQX	END=95947887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947888	.	A	.	.	LowGQX	END=95947889	GT	./.
chr2	95947890	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947891	.	C	.	.	LowGQX	END=95947892	GT	./.
chr2	95947893	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947894	.	T	.	.	LowGQX	.	GT	./.
chr2	95947895	.	G	.	.	LowGQX	END=95947903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947904	.	G	.	.	LowGQX	.	GT	./.
chr2	95947905	.	G	.	.	LowGQX	END=95947907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947908	.	A	.	.	LowGQX	.	GT	./.
chr2	95947909	.	G	.	.	LowGQX	END=95947915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947916	.	G	.	.	LowGQX	.	GT	./.
chr2	95947917	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947918	.	A	.	.	LowGQX	.	GT	./.
chr2	95947919	.	C	.	.	LowGQX	END=95947923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947924	.	C	.	.	LowGQX	.	GT	./.
chr2	95947925	.	T	.	.	LowGQX	END=95947927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947928	.	A	.	.	LowGQX	.	GT	./.
chr2	95947929	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947930	.	C	.	.	LowGQX	.	GT	./.
chr2	95947931	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947932	.	C	.	.	LowGQX	.	GT	./.
chr2	95947933	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947934	.	A	.	.	LowGQX	.	GT	./.
chr2	95947935	.	C	.	.	LowGQX	END=95947942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947943	.	A	.	.	LowGQX	.	GT	./.
chr2	95947944	.	C	.	.	LowGQX	END=95947946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947947	.	C	.	.	LowGQX	.	GT	./.
chr2	95947948	.	C	.	.	LowGQX	END=95947949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95947950	.	G	.	.	LowGQX	END=95947951	GT	./.
chr2	95947952	.	A	.	.	LowGQX	END=95947982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95950715	.	A	.	.	LowGQX	END=95950865	GT	./.
chr2	95951373	.	C	.	.	LowGQX	END=95951472	GT	./.
chr2	95952224	.	C	.	.	LowGQX	END=95952323	GT	./.
chr2	95952529	.	C	.	.	LowGQX	END=95952628	GT	./.
chr2	95952872	.	C	.	.	LowGQX	END=95952971	GT	./.
chr2	95953129	.	C	.	.	LowGQX	END=95953228	GT	./.
chr2	95953954	.	C	.	.	LowGQX	END=95954053	GT	./.
chr2	95954229	.	A	.	.	LowGQX	END=95954339	GT	./.
chr2	95954663	.	C	.	.	LowGQX	END=95954762	GT	./.
chr2	95963085	.	G	.	.	LowGQX	END=95963244	GT	./.
chr2	95975927	.	T	.	.	LowGQX	END=95975934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95975935	.	T	.	.	LowGQX	.	GT	./.
chr2	95975936	.	C	.	.	LowGQX	END=95975937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95975938	.	G	.	.	LowGQX	.	GT	./.
chr2	95975939	.	G	.	.	LowGQX	END=95975944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95975945	.	A	.	.	LowGQX	END=95975946	GT	./.
chr2	95975947	.	G	.	.	LowGQX	END=95975985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95975986	.	T	.	.	LowGQX	.	GT	./.
chr2	95975987	.	G	.	.	LowGQX	END=95976001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95976002	.	T	.	.	LowGQX	END=95976003	GT	./.
chr2	95976004	.	C	.	.	LowGQX	END=95976013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95976014	.	T	.	.	LowGQX	.	GT	./.
chr2	95976015	.	C	.	.	LowGQX	END=95976023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	95976024	.	T	.	.	LowGQX	END=95976026	GT	./.
chr2	95976101	.	A	.	.	LowGQX	END=95976389	GT	./.
chr2	95976390	.	C	.	.	LowGQX	END=95976462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96012766	.	C	.	.	LowGQX	END=96012872	GT	./.
chr2	96040042	.	A	.	.	LowGQX	END=96040170	GT	./.
chr2	96040581	.	G	.	.	LowGQX	END=96040669	GT	./.
chr2	96040670	.	G	.	.	LowGQX	END=96040676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96040677	.	G	.	.	LowGQX	END=96040678	GT	./.
chr2	96040679	.	A	.	.	LowGQX	END=96040680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96040872	.	C	.	.	LowGQX	END=96040932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96040933	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	96040934	.	G	.	.	LowGQX	END=96040971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96047342	.	A	.	.	LowGQX	END=96047382	GT	./.
chr2	96047383	.	G	.	.	LowGQX	END=96047434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96047435	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	96047436	.	C	.	.	LowGQX	END=96047453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96048123	.	A	.	.	LowGQX	END=96048231	GT	./.
chr2	96048962	.	G	.	.	LowGQX	END=96049012	GT	./.
chr2	96049013	.	A	.	.	LowGQX	END=96049061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96049724	.	A	.	.	LowGQX	END=96049823	GT	./.
chr2	96071305	.	T	.	.	LowGQX	END=96071553	GT	./.
chr2	96072687	.	A	.	.	LowGQX	END=96072907	GT	./.
chr2	96076255	.	G	.	.	LowGQX	END=96076354	GT	./.
chr2	96076610	.	A	.	.	LowGQX	END=96076744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96076745	.	C	.	.	LowGQX	END=96076776	GT	./.
chr2	96078180	.	A	.	.	LowGQX	END=96078282	GT	./.
chr2	96078283	.	G	.	.	LowGQX	END=96078292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96078419	.	A	.	.	LowGQX	.	GT	./.
chr2	96078420	.	T	.	.	LowGQX	END=96078426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96078427	.	T	.	.	LowGQX	.	GT	./.
chr2	96078428	.	T	.	.	LowGQX	END=96078431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96078432	.	A	.	.	LowGQX	END=96078518	GT	./.
chr2	96078625	.	T	.	.	LowGQX	END=96078724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:54
chr2	96142911	.	A	.	.	LowGQX	END=96143399	GT	./.
chr2	96144456	.	A	.	.	LowGQX	END=96144546	GT	./.
chr2	96144547	.	G	.	.	LowGQX;LowMQ	END=96144606	GT	./.
chr2	96145035	.	A	.	.	LowGQX	END=96145194	GT	./.
chr2	96146052	.	C	.	.	LowGQX	END=96146236	GT	./.
chr2	96146237	.	T	.	.	LowGQX	END=96146283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96147341	.	A	.	.	LowGQX	END=96147440	GT	./.
chr2	96148040	.	G	.	.	LowGQX	END=96148469	GT	./.
chr2	96194892	.	C	.	.	LowGQX	END=96195015	GT	./.
chr2	96195016	.	C	.	.	LowGQX	END=96195021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96195022	.	C	.	.	LowGQX	.	GT	./.
chr2	96195023	.	A	.	.	LowGQX	END=96195031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96195032	.	A	.	.	LowGQX	.	GT	./.
chr2	96195033	.	G	.	.	LowGQX	END=96195044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96195045	.	A	.	.	LowGQX	.	GT	./.
chr2	96195046	.	C	.	.	LowGQX	END=96195080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96195081	.	C	.	.	LowGQX	.	GT	./.
chr2	96195082	.	C	.	.	LowGQX	END=96195086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96195087	.	T	.	.	LowGQX	.	GT	./.
chr2	96195088	.	C	.	.	LowGQX	END=96195100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96195101	.	G	.	.	LowGQX	.	GT	./.
chr2	96195102	.	G	.	.	LowGQX	END=96195110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96195111	.	T	.	.	LowGQX	.	GT	./.
chr2	96195112	.	G	.	.	LowGQX	END=96195117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96195118	.	T	.	.	LowGQX	.	GT	./.
chr2	96195119	.	C	.	.	LowGQX	END=96195130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96195131	.	T	.	.	LowGQX	.	GT	./.
chr2	96195132	.	G	.	.	LowGQX	END=96195136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96195137	.	C	.	.	LowGQX	.	GT	./.
chr2	96195138	.	C	.	.	LowGQX	END=96195147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96195148	.	C	.	.	LowGQX	.	GT	./.
chr2	96195149	.	A	.	.	LowGQX	END=96195175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96195176	.	A	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	96195177	.	C	.	.	LowGQX	END=96195267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96195268	.	C	.	.	LowGQX	END=96195320	GT	./.
chr2	96195321	.	G	.	.	LowGQX	END=96195432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96259770	.	A	.	.	LowGQX	END=96259806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	96259807	.	A	.	.	LowGQX	.	GT	./.
chr2	96259808	.	C	.	.	LowGQX	END=96259826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	96259827	.	T	.	.	LowGQX	.	GT	./.
chr2	96259828	.	G	.	.	LowGQX	END=96259850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	96259851	.	C	.	.	LowGQX	.	GT	./.
chr2	96259852	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:48
chr2	96259853	.	A	.	.	LowGQX	END=96259959	GT	./.
chr2	96259960	.	C	.	.	LowGQX;LowMQ	END=96260149	GT	./.
chr2	96260150	.	C	.	.	LowGQX	END=96260184	GT	./.
chr2	96260796	.	A	.	.	LowGQX	END=96260858	GT	./.
chr2	96260859	.	T	.	.	LowGQX	END=96260895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96261917	.	G	.	.	LowGQX	END=96261938	GT	./.
chr2	96261939	.	T	.	.	LowGQX	END=96262031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:39
chr2	96262032	.	A	.	.	LowGQX	END=96262182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:35
chr2	96262979	.	C	.	.	LowGQX;LowMQ	END=96263011	GT	./.
chr2	96263012	.	A	.	.	LowGQX	END=96263138	GT	./.
chr2	96263575	.	T	.	.	LowGQX;LowMQ	END=96263703	GT	./.
chr2	96263704	.	T	.	.	LowGQX	END=96263727	GT	./.
chr2	96264827	.	C	.	.	LowGQX	END=96265323	GT	./.
chr2	96514545	.	A	.	.	LowGQX	END=96514644	GT	./.
chr2	96516882	.	T	.	.	LowGQX	END=96516981	GT	./.
chr2	96517376	.	T	.	.	LowGQX	END=96517534	GT	./.
chr2	96517535	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96517859	.	T	.	.	LowGQX	END=96517958	GT	./.
chr2	96519456	.	C	.	.	LowGQX	END=96519609	GT	./.
chr2	96521013	.	C	.	.	LowGQX	END=96521101	GT	./.
chr2	96521102	.	A	.	.	LowGQX	END=96521106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96521107	.	G	.	3.20	LowGQX	DP=1;MQ=25;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:25:0
chr2	96521108	.	A	.	.	LowGQX	END=96521137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96521138	.	T	.	3.20	LowGQX	DP=1;MQ=25;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:25:0
chr2	96521139	.	T	.	.	LowGQX	END=96521155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96521156	.	C	.	.	LowGQX	END=96521244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:34
chr2	96521245	.	T	.	36.01	LowGQX	DP=4;MQ=37;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:3:6.02:37:6
chr2	96521246	.	T	.	36.01	LowGQX	DP=4;MQ=37;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:3:6.02:37:6
chr2	96521247	.	T	.	36.01	LowGQX	DP=4;MQ=37;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:3:6.02:37:6
chr2	96521248	.	T	.	33.01	LowGQX	DP=3;MQ=40;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:2:3.01:40:3
chr2	96521249	.	T	.	.	LowGQX	END=96521296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:40
chr2	96521297	.	T	C	43.14	LowGQ;LowGQX	DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=40;MQ0=0;QD=14.38;SB=-31.56	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:6.02:74,6,0:40:6:1.000
chr2	96521298	.	T	.	.	LowGQX	END=96521323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96521324	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=45;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:45:3:1.000
chr2	96521325	.	T	.	.	LowGQX	END=96521335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96521336	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=45;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:45:3:1.000
chr2	96521337	.	G	.	.	LowGQX	END=96521368;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96521369	.	T	.	.	LowGQX	END=96521407	GT	./.
chr2	96521408	.	G	.	.	LowGQX	END=96521511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96521512	.	A	C	9.30	LowGQX	BaseQRankSum=-1.026;DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=1.026;QD=2.32;ReadPosRankSum=-1.026;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:38.75:39,0,39:60:9:0.500
chr2	96521513	.	C	.	.	LowGQX	END=96521547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	96521548	.	G	A	9.30	LowGQX	BaseQRankSum=1.026;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=1.026;QD=2.32;ReadPosRankSum=1.026;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:38.73:39,0,39:60:9:0.500
chr2	96521549	.	T	.	.	LowGQX	END=96521555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96521556	.	T	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	96521557	.	T	.	.	LowGQX	END=96521562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96521563	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	96521564	.	T	.	.	LowGQX	END=96521595;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96521596	.	C	G	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	96521597	.	A	.	.	LowGQX	END=96521606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96521607	.	G	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	96521608	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	96521609	.	T	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	96521610	.	A	.	.	LowGQX	END=96521639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96521640	.	C	.	.	LowGQX	END=96521928	GT	./.
chr2	96523056	.	C	.	.	LowGQX	END=96523175	GT	./.
chr2	96523176	.	C	.	.	LowGQX	END=96523185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	96523186	.	T	.	.	LowGQX	.	GT	./.
chr2	96523187	.	T	.	.	LowGQX	END=96523205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	96523206	.	T	.	.	LowGQX	.	GT	./.
chr2	96523207	.	T	.	.	LowGQX	END=96523253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	96525608	.	C	.	.	LowGQX	.	GT	./.
chr2	96525609	.	C	.	.	LowGQX	END=96525615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525616	.	T	.	.	LowGQX	END=96525617	GT	./.
chr2	96525618	.	C	.	.	LowGQX	END=96525620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525621	.	A	.	.	LowGQX	.	GT	./.
chr2	96525622	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525623	.	T	.	.	LowGQX	.	GT	./.
chr2	96525624	.	T	.	.	LowGQX	END=96525625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525626	.	T	.	.	LowGQX	.	GT	./.
chr2	96525627	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525628	.	T	.	.	LowGQX	END=96525629	GT	./.
chr2	96525630	.	T	.	.	LowGQX	END=96525639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525640	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=55;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:55:3:1.000
chr2	96525641	.	T	.	.	LowGQX	.	GT	./.
chr2	96525642	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525643	.	T	.	.	LowGQX	END=96525644	GT	./.
chr2	96525645	.	T	.	.	LowGQX	END=96525647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525648	.	T	.	.	LowGQX	.	GT	./.
chr2	96525649	.	G	.	.	LowGQX	END=96525651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525652	.	T	.	.	LowGQX	.	GT	./.
chr2	96525653	.	T	.	.	LowGQX	END=96525654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525655	.	A	.	.	LowGQX	.	GT	./.
chr2	96525656	.	C	.	.	LowGQX	END=96525658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525659	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=55;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:55:3:1.000
chr2	96525660	.	G	.	.	LowGQX	END=96525665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525666	.	A	.	.	LowGQX	.	GT	./.
chr2	96525667	.	T	.	.	LowGQX	END=96525675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525676	.	T	.	.	LowGQX	.	GT	./.
chr2	96525677	.	T	.	.	LowGQX	END=96525685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525686	.	T	.	.	LowGQX	.	GT	./.
chr2	96525687	.	C	.	.	LowGQX	END=96525698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525699	.	A	.	.	LowGQX	.	GT	./.
chr2	96525700	.	C	.	.	LowGQX	END=96525701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525702	.	C	.	.	LowGQX	.	GT	./.
chr2	96525703	.	T	.	.	LowGQX	END=96525707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525708	.	T	.	.	LowGQX	.	GT	./.
chr2	96525709	.	T	.	.	LowGQX	END=96525716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525717	.	A	.	.	LowGQX	.	GT	./.
chr2	96525718	.	G	.	5.68	LowGQX	DP=1;MQ=55;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:55:0
chr2	96525719	.	T	.	.	LowGQX	END=96525720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525721	.	T	.	.	LowGQX	.	GT	./.
chr2	96525722	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525723	.	C	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=4;HaplotypeScore=0.0000;MQ=55;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:55:3:1.000
chr2	96525724	.	G	.	.	LowGQX	END=96525735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525736	.	T	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=55;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:55:3:1.000
chr2	96525737	.	A	.	.	LowGQX	END=96525740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:55
chr2	96525741	.	T	.	.	LowGQX	END=96525822	GT	./.
chr2	96533156	.	T	.	.	LowGQX	END=96533166	GT	./.
chr2	96533167	.	A	.	.	LowGQX;LowMQ	END=96533329	GT	./.
chr2	96541670	.	T	.	.	LowGQX	END=96541769	GT	./.
chr2	96542111	.	C	.	.	LowGQX	END=96542269	GT	./.
chr2	96546161	.	A	.	.	LowGQX	END=96546225	GT	./.
chr2	96546226	.	A	.	.	LowGQX	END=96546260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96546307	.	G	.	.	LowGQX	END=96546335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96546336	.	T	.	.	LowGQX	.	GT	./.
chr2	96546337	.	A	.	.	LowGQX	END=96546373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96546374	.	A	.	.	LowGQX	END=96546406	GT	./.
chr2	96548036	.	T	.	.	LowGQX	END=96548135	GT	./.
chr2	96548181	.	A	.	.	LowGQX	END=96548280	GT	./.
chr2	96549907	.	T	.	.	LowGQX	END=96550006	GT	./.
chr2	96550052	.	A	.	.	LowGQX	END=96550151	GT	./.
chr2	96551782	.	G	.	.	LowGQX	END=96551881	GT	./.
chr2	96551928	.	G	.	.	LowGQX	END=96551939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96551940	.	A	.	.	LowGQX	.	GT	./.
chr2	96551941	.	A	.	.	LowGQX	END=96551954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96551955	.	T	.	.	LowGQX	.	GT	./.
chr2	96551956	.	T	.	.	LowGQX	END=96551963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96551964	.	C	.	.	LowGQX	.	GT	./.
chr2	96551965	.	T	.	.	LowGQX	END=96552027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:43
chr2	96553659	.	T	.	.	LowGQX	END=96553758	GT	./.
chr2	96553804	.	G	.	.	LowGQX	END=96553903	GT	./.
chr2	96555533	.	G	.	.	LowGQX	END=96555539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96555540	.	A	.	.	LowGQX	.	GT	./.
chr2	96555541	.	A	.	.	LowGQX	END=96555549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96555550	.	T	.	.	LowGQX	.	GT	./.
chr2	96555551	.	C	.	.	LowGQX	END=96555559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96555560	.	T	.	.	LowGQX	.	GT	./.
chr2	96555561	.	T	.	.	LowGQX	END=96555575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96555576	.	T	.	.	LowGQX	.	GT	./.
chr2	96555577	.	C	.	.	LowGQX	END=96555620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96555621	.	T	.	.	LowGQX	END=96555777	GT	./.
chr2	96557342	.	G	.	.	LowGQX	END=96557471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96557472	.	T	.	.	LowGQX	END=96557498	GT	./.
chr2	96557544	.	T	.	.	LowGQX	END=96557573	GT	./.
chr2	96557574	.	C	.	.	LowGQX	END=96557643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:54
chr2	96559267	.	G	.	.	LowGQX	END=96559345	GT	./.
chr2	96559346	.	C	.	.	LowGQX	END=96559366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:50
chr2	96559408	.	T	.	.	LowGQX	END=96559441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:48
chr2	96559442	.	A	.	.	LowGQX	END=96559507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:56
chr2	96561133	.	T	.	.	LowGQX	END=96561232	GT	./.
chr2	96561274	.	T	.	.	LowGQX	END=96561373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:25
chr2	96562947	.	G	.	.	LowGQX	END=96563103	GT	./.
chr2	96563149	.	T	.	.	LowGQX	END=96563248	GT	./.
chr2	96564819	.	G	.	.	LowGQX;LowMQ	END=96564950	GT	./.
chr2	96564951	.	C	.	.	LowGQX	END=96565000	GT	./.
chr2	96565001	.	A	.	.	LowGQX;LowMQ	END=96565119	GT	./.
chr2	96566689	.	C	.	.	LowGQX	END=96566989	GT	./.
chr2	96570435	.	G	.	.	LowGQX	END=96570735	GT	./.
chr2	96572305	.	C	.	.	LowGQX	END=96572609	GT	./.
chr2	96572614	.	A	.	.	LowGQX	END=96572713	GT	./.
chr2	96574251	.	T	.	.	LowGQX	END=96574387	GT	./.
chr2	96574388	.	G	.	.	LowGQX	END=96574425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:51
chr2	96574426	.	T	.	.	LowGQX	END=96574480	GT	./.
chr2	96576050	.	G	.	.	LowGQX	END=96576059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96576060	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	96576061	.	A	.	.	LowGQX	END=96576096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96576097	.	C	A	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr2	96576098	.	A	.	.	LowGQX	END=96576144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96576145	.	T	.	.	LowGQX	END=96576194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	96576195	.	T	.	.	LowGQX	END=96576206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96576252	.	T	.	.	LowGQX	END=96576351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96577978	.	T	.	.	LowGQX	END=96578077	GT	./.
chr2	96578119	.	T	.	.	LowGQX	END=96578218	GT	./.
chr2	96579785	.	G	.	.	LowGQX	END=96579971	GT	./.
chr2	96579972	.	T	.	.	LowGQX	END=96580086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96581714	.	T	.	.	LowGQX	END=96581723	GT	./.
chr2	96581724	.	T	.	.	LowGQX	END=96581739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	96581740	.	T	.	.	LowGQX	END=96581741	GT	./.
chr2	96581742	.	T	.	.	LowGQX	END=96581813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	96581855	.	T	.	.	LowGQX	END=96581876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:56
chr2	96581877	.	G	.	.	LowGQX	.	GT	./.
chr2	96581878	.	A	.	.	LowGQX	END=96581910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96581911	.	G	.	.	LowGQX	.	GT	./.
chr2	96581912	.	A	.	.	LowGQX	END=96581954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96583589	.	T	.	.	LowGQX	END=96583688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96583726	.	T	.	.	LowGQX	END=96583757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96583758	.	T	.	.	LowGQX	.	GT	./.
chr2	96583759	.	T	.	.	LowGQX	END=96583791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96583792	.	T	.	.	LowGQX	.	GT	./.
chr2	96583793	.	G	.	.	LowGQX	END=96583825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96587284	.	A	.	.	LowGQX	END=96587593	GT	./.
chr2	96589229	.	T	.	.	LowGQX	END=96589238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96589239	.	T	.	.	LowGQX	.	GT	./.
chr2	96589240	.	T	.	.	LowGQX	END=96589243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96589244	.	T	.	.	LowGQX	.	GT	./.
chr2	96589245	.	G	.	.	LowGQX	END=96589259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96589260	.	C	.	.	LowGQX	.	GT	./.
chr2	96589261	.	C	.	.	LowGQX	END=96589265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96589266	.	T	.	.	LowGQX	.	GT	./.
chr2	96589267	.	T	.	.	LowGQX	END=96589277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96589278	.	G	.	.	LowGQX	END=96589279	GT	./.
chr2	96589280	.	T	.	.	LowGQX	END=96589282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96589283	.	A	.	.	LowGQX	.	GT	./.
chr2	96589284	.	T	.	.	LowGQX	END=96589285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96589286	.	C	.	.	LowGQX	.	GT	./.
chr2	96589287	.	A	.	.	LowGQX	END=96589289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96589290	.	G	.	.	LowGQX	.	GT	./.
chr2	96589291	.	C	.	.	LowGQX	END=96589295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96589296	.	T	.	.	LowGQX	.	GT	./.
chr2	96589297	.	C	.	.	LowGQX	END=96589301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96589302	.	T	.	.	LowGQX	.	GT	./.
chr2	96589303	.	T	.	.	LowGQX	END=96589313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96589314	.	G	.	.	LowGQX	.	GT	./.
chr2	96589315	.	C	.	.	LowGQX	END=96589337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	96589338	.	T	.	.	LowGQX	.	GT	./.
chr2	96589339	.	A	.	.	LowGQX	END=96589343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	96589344	.	T	.	.	LowGQX	.	GT	./.
chr2	96589345	.	A	.	.	LowGQX	END=96589377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	96589378	.	T	.	.	LowGQX	.	GT	./.
chr2	96589379	.	A	.	.	LowGQX	END=96589465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	96589466	.	T	.	.	LowGQX	END=96589472	GT	./.
chr2	96591086	.	T	.	.	LowGQX	END=96591185	GT	./.
chr2	96591231	.	A	.	.	LowGQX	END=96591235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96591236	.	T	.	.	LowGQX	.	GT	./.
chr2	96591237	.	A	.	.	LowGQX	END=96591330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96592891	.	T	.	.	LowGQX	END=96592897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96592898	.	C	.	.	LowGQX	.	GT	./.
chr2	96592899	.	A	.	.	LowGQX	END=96592904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96592905	.	G	.	.	LowGQX	.	GT	./.
chr2	96592906	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96592907	.	G	.	.	LowGQX	END=96592908	GT	./.
chr2	96592909	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96592910	.	G	.	.	LowGQX	.	GT	./.
chr2	96592911	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96592912	.	A	.	.	LowGQX	END=96593047	GT	./.
chr2	96593093	.	G	.	.	LowGQX	END=96593115	GT	./.
chr2	96593116	.	A	.	.	LowGQX	END=96593118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96593119	.	C	.	.	LowGQX	.	GT	./.
chr2	96593120	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96593121	.	T	.	.	LowGQX	END=96593122	GT	./.
chr2	96593123	.	A	.	.	LowGQX	END=96593124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96593125	.	T	.	.	LowGQX	.	GT	./.
chr2	96593126	.	T	.	.	LowGQX	END=96593128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96593129	.	C	.	.	LowGQX	.	GT	./.
chr2	96593130	.	T	.	.	LowGQX	END=96593144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96593145	.	T	.	.	LowGQX	.	GT	./.
chr2	96593146	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96593147	.	C	.	.	LowGQX	.	GT	./.
chr2	96593148	.	T	.	.	LowGQX	END=96593150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96593151	.	G	.	.	LowGQX	.	GT	./.
chr2	96593152	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96593153	.	A	.	.	LowGQX	.	GT	./.
chr2	96593154	.	G	.	.	LowGQX	END=96593178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96593179	.	T	.	.	LowGQX	END=96593180	GT	./.
chr2	96593181	.	A	.	.	LowGQX	END=96593192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96594749	.	A	.	.	LowGQX	END=96594758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:41
chr2	96594759	.	G	A	43.15	LowGQ;LowGQX	DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=41;MQ0=0;QD=14.38;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:6.02:74,6,0:41:6:1.000
chr2	96594760	.	G	.	.	LowGQX	END=96594766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:41
chr2	96594767	.	A	C	43.15	LowGQ;LowGQX	DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=41;MQ0=0;QD=14.38;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:6.02:74,6,0:41:6:1.000
chr2	96594768	.	G	.	.	LowGQX	END=96594776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:41
chr2	96594777	.	C	T	43.15	LowGQ;LowGQX	DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=41;MQ0=0;QD=14.38;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:6.02:74,6,0:41:6:1.000
chr2	96594778	.	A	.	.	LowGQX	END=96594781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:41
chr2	96594782	.	T	.	.	LowGQX	END=96594784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594785	.	T	.	.	LowGQX	.	GT	./.
chr2	96594786	.	T	.	.	LowGQX	END=96594790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594791	.	A	.	5.68	LowGQX	DP=1;MQ=25;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:25:0
chr2	96594792	.	T	.	.	LowGQX	END=96594793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594794	.	A	.	.	LowGQX	END=96594796	GT	./.
chr2	96594797	.	T	.	.	LowGQX	END=96594801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594802	.	A	.	3.20	LowGQX	DP=1;MQ=25;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:25:0
chr2	96594803	.	G	.	.	LowGQX	END=96594811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594812	.	A	.	.	LowGQX	.	GT	./.
chr2	96594813	.	A	.	.	LowGQX	END=96594824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594825	.	C	.	.	LowGQX	.	GT	./.
chr2	96594826	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594827	.	A	.	.	LowGQX	.	GT	./.
chr2	96594828	.	G	.	.	LowGQX	END=96594839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594840	.	T	.	3.20	LowGQX	DP=1;MQ=25;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:25:0
chr2	96594841	.	C	.	.	LowGQX	END=96594848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594849	.	T	.	.	LowGQX	.	GT	./.
chr2	96594850	.	C	.	.	LowGQX	END=96594857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594858	.	A	.	3.20	LowGQX	DP=1;MQ=25;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:25:0
chr2	96594859	.	T	.	.	LowGQX	END=96594860	GT	./.
chr2	96594861	.	T	.	.	LowGQX	END=96594865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594866	.	A	.	.	LowGQX	.	GT	./.
chr2	96594867	.	A	.	.	LowGQX	END=96594870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594871	.	A	.	.	LowGQX	END=96594872	GT	./.
chr2	96594873	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594874	.	C	.	3.20	LowGQX	DP=1;MQ=25;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:25:0
chr2	96594875	.	T	.	.	LowGQX	END=96594877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594878	.	G	.	.	LowGQX	END=96594879	GT	./.
chr2	96594880	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594881	.	G	.	.	LowGQX	.	GT	./.
chr2	96594882	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594883	.	C	.	3.20	LowGQX	DP=1;MQ=25;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:25:0
chr2	96594884	.	A	.	.	LowGQX	END=96594889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594890	.	A	.	.	LowGQX	END=96594905	GT	./.
chr2	96594951	.	G	.	.	LowGQX	END=96594966	GT	./.
chr2	96594967	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594968	.	T	.	.	LowGQX	.	GT	./.
chr2	96594969	.	A	.	.	LowGQX	END=96594974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594975	.	G	.	.	LowGQX	.	GT	./.
chr2	96594976	.	A	.	.	LowGQX	END=96594977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594978	.	T	.	.	LowGQX	.	GT	./.
chr2	96594979	.	T	.	.	LowGQX	END=96594989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594990	.	C	.	.	LowGQX	.	GT	./.
chr2	96594991	.	T	.	.	LowGQX	END=96594993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96594994	.	G	.	.	LowGQX	.	GT	./.
chr2	96594995	.	C	.	.	LowGQX	END=96595001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96595002	.	T	.	.	LowGQX	.	GT	./.
chr2	96595003	.	T	.	.	LowGQX	END=96595008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96595009	.	G	.	.	LowGQX	.	GT	./.
chr2	96595010	.	A	.	.	LowGQX	END=96595011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96595012	.	G	.	.	LowGQX	.	GT	./.
chr2	96595013	.	A	.	.	LowGQX	END=96595025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96595026	.	A	.	.	LowGQX	.	GT	./.
chr2	96595027	.	A	.	.	LowGQX	END=96595031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96595032	.	A	.	.	LowGQX	END=96595033	GT	./.
chr2	96595034	.	A	.	.	LowGQX	END=96595043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96595044	.	T	.	.	LowGQX	.	GT	./.
chr2	96595045	.	C	.	.	LowGQX	END=96595050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	96601188	.	A	.	.	LowGQX	END=96601287	GT	./.
chr2	96601328	.	A	.	.	LowGQX	END=96601427	GT	./.
chr2	96604563	.	A	.	.	LowGQX	END=96604578	GT	./.
chr2	96604579	.	T	.	.	LowGQX	END=96604590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96604591	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=40;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:40:3:1.000
chr2	96604592	.	G	.	.	LowGQX	END=96604605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96604606	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=40;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:40:3:1.000
chr2	96604607	.	C	.	.	LowGQX	END=96604631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96604632	.	A	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=40;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:40:3:1.000
chr2	96604633	.	C	.	.	LowGQX	END=96604642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96604643	.	C	.	.	LowGQX	.	GT	./.
chr2	96604644	.	C	.	.	LowGQX	END=96604662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96604699	.	G	.	.	LowGQX	END=96604717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96604718	.	A	.	.	LowGQX	.	GT	./.
chr2	96604719	.	A	.	.	LowGQX	END=96604729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96604730	.	T	.	.	LowGQX	END=96604779	GT	./.
chr2	96604780	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96604781	.	C	.	.	LowGQX	.	GT	./.
chr2	96604782	.	A	.	.	LowGQX	END=96604783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96604784	.	A	.	.	LowGQX	END=96604785	GT	./.
chr2	96604786	.	A	.	.	LowGQX	END=96604789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96604790	.	G	.	.	LowGQX	END=96604792	GT	./.
chr2	96604793	.	T	.	.	LowGQX	END=96604794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96604795	.	C	.	.	LowGQX	.	GT	./.
chr2	96604796	.	A	.	.	LowGQX	END=96604798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96606878	.	C	.	.	LowGQX	END=96606977	GT	./.
chr2	96610359	.	C	.	.	LowGQX	END=96610458	GT	./.
chr2	96610842	.	T	.	.	LowGQX	END=96610909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96610910	.	G	.	.	LowGQX	END=96610920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	96610921	.	T	G	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=4.771;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.736;QD=1.05;ReadPosRankSum=-0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:30.29:30,0,70:60:3:0.333
chr2	96610922	.	T	.	.	LowGQX	END=96610941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	96614261	.	A	.	.	LowGQX	END=96614324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96614325	.	G	.	.	LowGQX	END=96614360	GT	./.
chr2	96616462	.	T	.	.	LowGQX	END=96616484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96616485	.	C	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	96616486	.	T	.	.	LowGQX	END=96616503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96616504	.	C	.	.	LowGQX	END=96616561	GT	./.
chr2	96617025	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=45;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:45:3:1.000
chr2	96617026	.	A	.	.	LowGQX	END=96617029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96617030	.	A	.	.	LowGQX	.	GT	./.
chr2	96617031	.	A	.	.	LowGQX	END=96617038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96617039	.	A	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=45;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:45:3:1.000
chr2	96617040	.	A	.	.	LowGQX	END=96617056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96617057	.	T	.	.	LowGQX	.	GT	./.
chr2	96617058	.	C	.	.	LowGQX	END=96617068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96617069	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=45;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:45:3:1.000
chr2	96617070	.	C	.	.	LowGQX	END=96617089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96617090	.	A	G	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=45;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:45:3:1.000
chr2	96617091	.	C	.	.	LowGQX	END=96617105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96617106	.	A	.	5.68	LowGQX	DP=1;MQ=45;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:45:0
chr2	96617107	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96617108	.	A	.	.	LowGQX	.	GT	./.
chr2	96617109	.	T	.	.	LowGQX	END=96617110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96617111	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=45;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:45:3:1.000
chr2	96617112	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96617113	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=45;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:45:3:1.000
chr2	96617114	.	G	.	.	LowGQX	END=96617124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96617125	.	T	.	.	LowGQX	.	GT	./.
chr2	96617126	.	T	.	.	LowGQX	END=96617131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96617132	.	T	.	2.30	LowGQX	DP=1;MQ=45;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:45:0
chr2	96617133	.	T	.	.	LowGQX	END=96617154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96617155	.	A	G	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=45;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:45:3:1.000
chr2	96617156	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:45
chr2	96617157	.	C	.	.	LowGQX	END=96617165	GT	./.
chr2	96617166	.	A	.	.	LowGQX	END=96617175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96619616	.	G	.	.	LowGQX	END=96619729	GT	./.
chr2	96619730	.	A	.	.	LowGQX	END=96619733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96619734	.	C	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	96619735	.	A	.	.	LowGQX	END=96619769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96622499	.	T	.	.	LowGQX	END=96622525	GT	./.
chr2	96622526	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96622527	.	A	.	.	LowGQX	END=96622528	GT	./.
chr2	96622529	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96622530	.	A	.	.	LowGQX	.	GT	./.
chr2	96622531	.	T	.	.	LowGQX	END=96622534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96622535	.	T	.	.	LowGQX	END=96622539	GT	./.
chr2	96622540	.	A	.	.	LowGQX	END=96622541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96622542	.	A	.	.	LowGQX	END=96622544	GT	./.
chr2	96622545	.	C	.	.	LowGQX	END=96622546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96622547	.	G	.	.	LowGQX	END=96622548	GT	./.
chr2	96622549	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96622550	.	C	.	.	LowGQX	END=96622552	GT	./.
chr2	96622553	.	C	.	.	LowGQX	END=96622554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96622555	.	G	.	.	LowGQX	.	GT	./.
chr2	96622556	.	C	.	2.30	LowGQX	DP=1;MQ=46;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:46:0
chr2	96622557	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96622558	.	G	.	.	LowGQX	END=96622559	GT	./.
chr2	96622560	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96622561	.	A	.	.	LowGQX	END=96622563	GT	./.
chr2	96622564	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96622565	.	C	.	.	LowGQX	.	GT	./.
chr2	96622566	.	T	.	.	LowGQX	END=96622567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96622568	.	T	.	.	LowGQX	.	GT	./.
chr2	96622569	.	C	.	.	LowGQX	END=96622570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96622571	.	A	.	.	LowGQX	END=96622572	GT	./.
chr2	96622573	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96622574	.	A	.	.	LowGQX	END=96622575	GT	./.
chr2	96622576	.	A	.	.	LowGQX	END=96622577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96622578	.	A	.	.	LowGQX	END=96622580	GT	./.
chr2	96622581	.	A	.	.	LowGQX	END=96622582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96622583	.	A	.	.	LowGQX	END=96622586	GT	./.
chr2	96622587	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96622588	.	A	.	.	LowGQX	END=96622592	GT	./.
chr2	96622593	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96622594	.	A	.	.	LowGQX	END=96622596	GT	./.
chr2	96622597	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:46
chr2	96622598	.	A	.	.	LowGQX	.	GT	./.
chr2	96624325	.	T	.	.	LowGQX	END=96624424	GT	./.
chr2	96624469	.	A	.	.	LowGQX	END=96624568	GT	./.
chr2	96626150	.	A	.	.	LowGQX	END=96626450	GT	./.
chr2	96628029	.	G	.	.	LowGQX	END=96628164	GT	./.
chr2	96628165	.	C	.	.	LowGQX	END=96628185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96628231	.	G	.	.	LowGQX	END=96628330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96643799	.	A	.	.	LowGQX	END=96643823	GT	./.
chr2	96643824	.	A	.	.	LowGQX	END=96643903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96643904	.	C	.	.	LowGQX	.	GT	./.
chr2	96643905	.	T	.	.	LowGQX	END=96643917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96643918	.	C	.	.	LowGQX	.	GT	./.
chr2	96643919	.	A	.	.	LowGQX	END=96643929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96643930	.	C	.	.	LowGQX	.	GT	./.
chr2	96643931	.	A	.	.	LowGQX	END=96643953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96646395	.	C	.	.	LowGQX	END=96646533	GT	./.
chr2	96648003	.	C	.	.	LowGQX	END=96648009	GT	./.
chr2	96648010	.	A	.	.	LowGQX	END=96648160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr2	96648161	.	C	.	.	LowGQX	END=96648162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96652498	.	C	.	.	LowGQX	END=96652561	GT	./.
chr2	96652562	.	A	.	.	LowGQX	END=96652598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	96652599	.	A	.	.	LowGQX	.	GT	./.
chr2	96652600	.	C	.	.	LowGQX	END=96652672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	96652839	.	C	.	.	LowGQX	END=96652852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96652853	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	96652854	.	T	.	.	LowGQX	END=96652945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96652946	.	A	.	.	LowGQX	END=96652954	GT	./.
chr2	96657259	.	C	.	.	LowGQX	END=96657339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96657340	.	A	.	.	LowGQX	END=96657416	GT	./.
chr2	96657417	.	C	.	.	LowGQX	END=96657456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96687855	.	A	.	.	LowGQX	END=96688025	GT	./.
chr2	96688394	.	T	.	.	LowGQX	END=96688493	GT	./.
chr2	96688689	.	G	.	.	LowGQX	END=96688788	GT	./.
chr2	96688852	.	A	.	.	LowGQX	END=96688976	GT	./.
chr2	96689055	.	A	.	.	LowGQX	END=96689190	GT	./.
chr2	96689660	.	G	.	.	LowGQX	END=96689759	GT	./.
chr2	96689935	.	A	.	.	LowGQX	END=96689976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:23
chr2	96689977	.	A	.	.	LowGQX	.	GT	./.
chr2	96689978	.	G	.	.	LowGQX	END=96690011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:23
chr2	96690012	.	C	.	.	LowGQX	END=96690042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:35
chr2	96690043	.	T	.	.	LowGQX	.	GT	./.
chr2	96690044	.	G	.	.	LowGQX	END=96690062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:35
chr2	96690063	.	C	.	33	LowGQX	DP=2;MQ=42;MQ0=1	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:42:3
chr2	96690064	.	A	.	.	LowGQX	END=96690077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:42
chr2	96690078	.	T	.	.	LowGQX	END=96690087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96690173	.	A	.	.	LowGQX	END=96690219	GT	./.
chr2	96690220	.	G	.	.	LowGQX	END=96690414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96690415	.	G	.	.	LowGQX	END=96690433	GT	./.
chr2	96690507	.	A	.	.	LowGQX	END=96690540	GT	./.
chr2	96690541	.	G	.	.	LowGQX	END=96690576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96690577	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	96690578	.	G	.	.	LowGQX	END=96690597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96690598	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	96690599	.	G	.	.	LowGQX	END=96690603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96690604	.	G	.	.	LowGQX	.	GT	./.
chr2	96690605	.	G	.	.	LowGQX	END=96690606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96691231	.	A	.	.	LowGQX	END=96691303	GT	./.
chr2	96691304	.	G	.	.	LowGQX	END=96691330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96691331	.	T	.	.	LowGQX	.	GT	./.
chr2	96691332	.	C	.	.	LowGQX	END=96691342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96691343	.	A	.	.	LowGQX	.	GT	./.
chr2	96691344	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96691345	.	A	.	.	LowGQX	.	GT	./.
chr2	96691346	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96691347	.	C	.	.	LowGQX	END=96691348	GT	./.
chr2	96691349	.	G	.	.	LowGQX	END=96691352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96691353	.	T	.	.	LowGQX	.	GT	./.
chr2	96691354	.	G	.	.	LowGQX	END=96691360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96691361	.	A	.	.	LowGQX	.	GT	./.
chr2	96691362	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96691363	.	A	.	.	LowGQX	.	GT	./.
chr2	96691364	.	C	.	.	LowGQX	END=96691372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96691373	.	C	.	.	LowGQX	.	GT	./.
chr2	96691374	.	A	.	.	LowGQX	END=96691388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96691389	.	A	.	.	LowGQX	.	GT	./.
chr2	96691390	.	A	.	.	LowGQX	END=96691393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96691394	.	A	.	.	LowGQX	.	GT	./.
chr2	96691395	.	A	.	.	LowGQX	END=96691399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96691400	.	A	.	.	LowGQX	.	GT	./.
chr2	96691401	.	G	.	.	LowGQX	END=96691408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96691409	.	A	.	.	LowGQX	.	GT	./.
chr2	96691410	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr2	96691670	.	G	.	.	LowGQX	END=96691769	GT	./.
chr2	96691929	.	A	.	.	LowGQX	END=96692055	GT	./.
chr2	96692372	.	C	.	.	LowGQX	END=96692721	GT	./.
chr2	96692753	.	A	.	.	LowGQX	END=96692783	GT	./.
chr2	96692784	.	C	.	.	LowGQX;LowMQ	END=96692911	GT	./.
chr2	96693154	.	A	.	.	LowGQX	END=96693175	GT	./.
chr2	96693176	.	G	.	.	LowGQX;LowMQ	END=96693323	GT	./.
chr2	96693324	.	A	.	.	LowGQX	END=96693513	GT	./.
chr2	96693686	.	G	.	.	LowGQX	END=96693840	GT	./.
chr2	96696121	.	A	.	.	LowGQX	END=96696284	GT	./.
chr2	96696439	.	T	.	.	LowGQX	END=96696598	GT	./.
chr2	96696936	.	A	.	.	LowGQX	END=96697095	GT	./.
chr2	96697779	.	A	.	.	LowGQX	END=96697839	GT	./.
chr2	96697840	.	G	.	.	LowGQX;LowMQ	END=96697947	GT	./.
chr2	96698027	.	T	.	.	LowGQX	END=96698126	GT	./.
chr2	96780544	.	C	.	.	PASS	END=96780571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	96780572	.	G	.	.	PASS	END=96780612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	96780613	.	A	.	.	PASS	END=96780639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	96780640	.	A	.	.	PASS	END=96780689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr2	96780690	.	A	.	.	PASS	END=96780715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:315:99:60
chr2	96780716	.	T	G	10569.10	PASS	BaseQRankSum=1.596;DP=382;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=27.7141;MQ=60;MQ0=0;MQRankSum=-1.705;QD=27.67;ReadPosRankSum=1.079;SB=-6266.46	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,381:382:99:10569,789,0:60:99:0.997
chr2	96780717	.	C	.	.	PASS	END=96780809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:324:99:60
chr2	96780810	.	A	.	.	PASS	END=96780848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:259:99:60
chr2	96780849	.	C	.	.	PASS	END=96780866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:60
chr2	96780867	.	A	.	.	PASS	END=96780885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	96780886	.	T	.	.	PASS	END=96780922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	96780923	.	G	.	.	PASS	END=96780955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	96780956	.	T	.	.	PASS	END=96780976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	96780977	.	C	.	.	PASS	END=96780986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:85:60
chr2	96780986	.	C	CTCCTCCTCT	4311.63	PASS	DP=58;FS=0.000;HRun=0;HaplotypeScore=301.4160;MQ=62;MQ0=0;QD=74.34;SB=-1579.80	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:18,32:58:99:4312,135,0:62:99:0.640
chr2	96780987	.	T	.	.	PASS	END=96781014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:62
chr2	96781015	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:62:62
chr2	96781016	.	T	.	.	PASS	END=96781049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:62
chr2	96781050	.	G	.	.	PASS	END=96781089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:61
chr2	96781090	.	T	.	.	PASS	END=96781145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	96781146	.	C	.	.	PASS	END=96781180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	96781181	.	G	.	.	PASS	END=96781220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	96781221	.	G	.	.	PASS	END=96781235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr2	96781236	.	G	.	.	PASS	END=96781262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr2	96781263	.	G	.	.	PASS	END=96781342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:338:99:60
chr2	96781343	.	A	.	.	PASS	END=96781396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:355:99:60
chr2	96781397	.	G	.	.	PASS	END=96781450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:272:99:60
chr2	96781451	.	C	.	.	PASS	END=96781511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr2	96781512	.	G	.	.	PASS	END=96781624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	96781625	.	G	.	.	PASS	END=96781744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr2	96781745	.	G	.	.	PASS	END=96781859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr2	96781860	.	T	.	.	PASS	END=96781874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:194:99:60
chr2	96781875	.	T	.	.	PASS	END=96781889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	96789587	.	G	.	.	LowGQX	END=96789656	GT	./.
chr2	96789657	.	G	.	.	LowGQX	END=96789738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96789739	.	A	.	.	LowGQX	.	GT	./.
chr2	96789740	.	G	.	.	LowGQX	END=96789758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96789759	.	C	.	.	LowGQX	.	GT	./.
chr2	96789760	.	T	.	.	LowGQX	END=96789781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96789782	.	G	.	.	LowGQX	.	GT	./.
chr2	96789783	.	A	.	.	LowGQX	END=96789796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96789797	.	G	.	.	LowGQX	.	GT	./.
chr2	96789798	.	G	.	.	LowGQX	END=96789804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96789805	.	T	.	.	LowGQX	.	GT	./.
chr2	96789806	.	G	T	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	96789807	.	C	.	.	LowGQX	END=96789904	GT	./.
chr2	96789905	.	C	.	.	LowGQX	END=96789913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96789914	.	T	.	.	LowGQX	.	GT	./.
chr2	96789915	.	C	.	.	LowGQX	END=96789939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96789940	.	T	.	.	LowGQX	.	GT	./.
chr2	96789941	.	G	.	.	LowGQX	END=96789962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96789963	.	A	.	.	LowGQX	.	GT	./.
chr2	96789964	.	T	.	.	LowGQX	END=96789981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96789982	.	G	.	.	LowGQX	.	GT	./.
chr2	96789983	.	C	.	.	LowGQX	END=96790012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96795561	.	A	.	.	LowGQX	END=96795719	GT	./.
chr2	96795794	.	G	.	.	LowGQX	END=96795842	GT	./.
chr2	96795843	.	G	.	.	LowGQX	END=96795856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96795857	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	96795858	.	G	.	.	LowGQX	END=96795893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96798277	.	A	.	.	LowGQX	END=96798301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96798302	.	A	.	.	LowGQX	.	GT	./.
chr2	96798303	.	C	.	.	LowGQX	END=96798376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96798377	.	A	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	96798378	.	C	.	.	LowGQX	END=96798440;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96798441	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	96798442	.	C	.	.	LowGQX	END=96798453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	96798454	.	G	C	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:33.30:33,0,33:60:5:0.500
chr2	96798455	.	A	.	.	LowGQX	END=96798462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	96799162	.	A	.	.	LowGQX	END=96799181	GT	./.
chr2	96799182	.	G	.	.	LowGQX	END=96799283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96799701	.	C	.	.	LowGQX	END=96799750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96799751	.	C	.	.	LowGQX	END=96799788	GT	./.
chr2	96799789	.	G	.	.	LowGQX	END=96799800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96801071	.	C	.	.	LowGQX	END=96801170	GT	./.
chr2	96803312	.	A	.	.	LowGQX	END=96803422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96803423	.	C	.	.	LowGQX	END=96803424	GT	./.
chr2	96803425	.	C	.	.	LowGQX	END=96803441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96804099	.	G	.	.	LowGQX	END=96804198	GT	./.
chr2	96809560	.	C	.	.	LowGQX	END=96809778	GT	./.
chr2	96809891	.	A	.	.	LowGQX	END=96810114	GT	./.
chr2	96810448	.	C	.	.	LowGQX	END=96810623	GT	./.
chr2	96810693	.	C	.	.	LowGQX	END=96811102	GT	./.
chr2	96852467	.	G	.	.	LowGQX	END=96852652	GT	./.
chr2	96852947	.	T	.	.	LowGQX	END=96853046	GT	./.
chr2	96858106	.	C	.	.	LowGQX	END=96858206	GT	./.
chr2	96858807	.	C	.	.	LowGQX	END=96858906	GT	./.
chr2	96858979	.	C	.	.	LowGQX	END=96859090	GT	./.
chr2	96860671	.	A	.	.	LowGQX	END=96860770	GT	./.
chr2	96861078	.	C	.	.	LowGQX	END=96861228	GT	./.
chr2	96861229	.	C	.	.	LowGQX	END=96861258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96861259	.	C	.	.	LowGQX	.	GT	./.
chr2	96861260	.	T	.	.	LowGQX	END=96861261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96861262	.	C	.	.	LowGQX	END=96861263	GT	./.
chr2	96861264	.	A	.	.	LowGQX	END=96861267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96861268	.	G	.	.	LowGQX	.	GT	./.
chr2	96861269	.	C	.	.	LowGQX	END=96861274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96861275	.	C	.	.	LowGQX	.	GT	./.
chr2	96861276	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96861277	.	C	.	.	LowGQX	.	GT	./.
chr2	96861278	.	A	.	.	LowGQX	END=96861286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96861287	.	T	.	.	LowGQX	.	GT	./.
chr2	96873882	.	C	.	.	LowGQX	END=96874035	GT	./.
chr2	96874036	.	C	.	.	LowGQX	END=96874092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96874093	.	C	.	.	LowGQX	END=96874094	GT	./.
chr2	96874095	.	C	.	.	LowGQX	END=96874144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96874145	.	A	.	.	LowGQX	.	GT	./.
chr2	96874146	.	G	.	.	LowGQX	END=96874172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96906062	.	A	.	.	LowGQX	END=96906426	GT	./.
chr2	96907566	.	A	.	.	LowGQX	END=96907665	GT	./.
chr2	96919495	.	A	.	.	PASS	END=96919503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	96919504	.	G	.	.	PASS	END=96919522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr2	96919523	.	A	.	.	PASS	END=96919532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:81:60
chr2	96919533	.	C	.	.	PASS	END=96919534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:68:60
chr2	96919535	.	C	.	.	PASS	END=96919542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr2	96919543	.	G	.	.	PASS	END=96919563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	96919564	.	G	.	.	PASS	END=96919600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	96919601	.	G	.	.	PASS	END=96919624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	96919625	.	T	.	.	PASS	END=96919653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	96919654	.	T	.	.	PASS	END=96919773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr2	96919774	.	C	.	.	PASS	END=96919800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	96919801	.	G	.	.	PASS	END=96919844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	96919845	.	A	.	.	PASS	END=96919854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	96919855	.	T	.	.	PASS	END=96919875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	96919876	.	A	.	.	PASS	END=96919904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	96920520	.	C	.	.	PASS	END=96920521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:33:60
chr2	96920522	.	C	.	.	PASS	END=96920524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:51:60
chr2	96920525	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:27:60
chr2	96920526	.	C	.	.	PASS	END=96920528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr2	96920529	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:51:60
chr2	96920530	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:81:60
chr2	96920531	.	T	.	.	PASS	END=96920535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:60:60
chr2	96920536	.	G	.	.	PASS	END=96920539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr2	96920540	.	C	.	.	PASS	END=96920551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr2	96920552	.	G	.	.	PASS	END=96920571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	96920572	.	C	.	.	PASS	END=96920607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	96920608	.	C	.	.	PASS	END=96920681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	96920682	.	A	.	.	PASS	END=96920711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:88:60
chr2	96920712	.	C	.	.	PASS	END=96920722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:91:60
chr2	96920723	.	T	.	.	PASS	END=96920749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr2	96920750	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:57:60
chr2	96920751	.	C	.	.	PASS	END=96920783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr2	96920784	.	A	.	.	PASS	END=96920786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:84:60
chr2	96930825	.	C	.	.	PASS	END=96930835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr2	96930836	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:72:60
chr2	96930837	.	C	.	.	PASS	END=96930850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	96930851	.	A	.	.	PASS	END=96930882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	96930883	.	C	.	.	PASS	END=96930910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	96930911	.	T	.	.	PASS	END=96930997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	96930998	.	A	.	.	PASS	END=96931016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	96931017	.	G	.	.	PASS	END=96931037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	96931038	.	C	.	.	PASS	END=96931053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr2	96931054	.	A	.	.	PASS	END=96931059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	96931060	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:63:60
chr2	96931061	.	C	.	.	PASS	END=96931070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr2	96931071	.	T	.	.	PASS	END=96931081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr2	96931082	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:15:60
chr2	96931083	.	G	.	.	PASS	END=96931095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	96931096	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:15:60
chr2	96931097	.	C	.	.	PASS	END=96931104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	96931105	.	T	.	.	PASS	END=96931117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr2	96931118	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	96931119	.	T	.	.	LowGQX	END=96931122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr2	96931123	.	C	.	.	LowGQX	END=96931146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr2	96931147	.	A	.	.	LowGQX	END=96931159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	96931160	.	C	.	.	LowGQX	END=96931170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	96932087	.	A	.	.	LowGQX	END=96932229	GT	./.
chr2	96933057	.	A	.	.	LowGQX	END=96933209	GT	./.
chr2	96933361	.	A	.	.	LowGQX	END=96933476	GT	./.
chr2	96933569	.	C	.	.	LowGQX	END=96933668	GT	./.
chr2	96934193	.	A	.	.	LowGQX	END=96934346	GT	./.
chr2	96934347	.	T	.	.	LowGQX	END=96934398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96935000	.	T	.	.	LowGQX	END=96935099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96936847	.	A	.	.	LowGQX	END=96937091	GT	./.
chr2	96940699	.	T	.	.	PASS	END=96940740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	96940741	.	C	.	.	PASS	END=96940815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	96940816	.	T	.	.	PASS	END=96940867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	96940868	.	G	.	.	PASS	END=96940910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	96940911	.	A	.	.	PASS	END=96941093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	96941094	.	T	.	.	PASS	END=96941116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	96941117	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:73:60
chr2	96941118	.	A	.	.	PASS	END=96941138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	96942398	.	T	.	.	PASS	END=96942411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	96942412	.	C	.	.	PASS	END=96942422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	96942423	.	G	.	.	PASS	END=96942427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr2	96942428	.	G	.	.	PASS	END=96942437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:36:60
chr2	96942438	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:33:60
chr2	96942439	.	T	.	.	PASS	END=96942444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr2	96942445	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:24:60
chr2	96942446	.	C	.	.	PASS	END=96942454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	96942455	.	G	.	.	PASS	END=96942474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	96942475	.	A	.	.	PASS	END=96942477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:42:60
chr2	96942478	.	C	.	.	PASS	END=96942487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	96942488	.	A	.	.	PASS	END=96942491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	96942492	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:33:60
chr2	96942493	.	C	.	.	PASS	END=96942497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	96942591	.	C	.	.	PASS	END=96942626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	96942627	.	G	.	.	PASS	END=96942720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	96942721	.	C	.	.	PASS	END=96942781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	96942782	.	A	.	.	PASS	END=96942806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	96942807	.	C	.	.	PASS	END=96942830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	96942831	.	T	.	.	PASS	END=96942848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	96942849	.	T	.	.	PASS	END=96942930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	96942931	.	T	.	.	PASS	END=96942978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	96942979	.	C	.	.	PASS	END=96942994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	96942995	.	A	.	.	PASS	END=96943006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	96943007	.	A	.	.	PASS	END=96943030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	96943226	.	C	.	.	PASS	END=96943254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	96943255	.	C	.	.	PASS	END=96943291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	96943292	.	T	.	.	PASS	END=96943366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	96943367	.	C	.	.	PASS	END=96943403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	96943404	.	C	.	.	PASS	END=96943424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:97:60
chr2	96943425	.	T	.	.	PASS	END=96943472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr2	96943473	.	T	C	727.28	PASS	BaseQRankSum=1.265;DP=50;Dels=0.00;FS=8.614;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=1.401;QD=14.55;ReadPosRankSum=-0.331;SB=-207.41	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:23,27:50:99:757,0,680:60:99:0.540
chr2	96943474	.	A	.	.	PASS	END=96943513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	96943514	.	C	.	.	PASS	END=96943534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	96943535	.	C	.	.	PASS	END=96943600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	96943601	.	A	.	.	PASS	END=96943676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	96943677	.	C	.	.	PASS	END=96943727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	96943728	.	A	.	.	PASS	END=96943739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	96943924	.	A	.	.	PASS	END=96943951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	96943952	.	C	.	.	PASS	END=96943998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	96943999	.	G	.	.	PASS	END=96944092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	96944093	.	A	.	.	PASS	END=96944147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	96944234	.	C	.	.	PASS	END=96944255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	96944256	.	G	.	.	PASS	END=96944301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	96944302	.	A	.	.	PASS	END=96944379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr2	96944380	.	T	.	.	PASS	END=96944400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	96944401	.	T	.	.	PASS	END=96944455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	96944456	.	A	.	.	PASS	END=96944479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	96944480	.	C	.	.	PASS	END=96944510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	96944511	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:72:60
chr2	96944512	.	A	.	.	PASS	END=96944523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr2	96944524	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:66:60
chr2	96944525	.	G	.	.	PASS	END=96944606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr2	96944607	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:72:60
chr2	96944608	.	G	.	.	PASS	END=96944636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	96944637	.	T	.	.	PASS	END=96944659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	96944660	.	T	.	.	PASS	END=96944671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	96944672	.	T	.	.	PASS	END=96944787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	96945138	.	A	.	.	PASS	END=96945154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	96945155	.	C	.	.	PASS	END=96945175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	96945176	.	G	.	.	PASS	END=96945214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	96945215	.	C	.	.	PASS	END=96945323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	96945324	.	A	.	.	PASS	END=96945346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	96945347	.	C	.	.	PASS	END=96945348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	96947501	.	T	.	.	PASS	END=96947521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:87:60
chr2	96947522	.	G	.	.	PASS	END=96947540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	96947541	.	G	.	.	PASS	END=96947661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	96947662	.	T	.	.	PASS	END=96947672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	96947673	.	G	.	.	PASS	END=96947691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	96947692	.	G	.	.	PASS	END=96947703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr2	96947704	.	G	.	.	PASS	END=96947711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:99:60
chr2	96948875	.	C	.	.	PASS	END=96948879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr2	96948880	.	G	.	.	PASS	END=96948893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:78:60
chr2	96948894	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:63:60
chr2	96948895	.	T	.	.	PASS	END=96948914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr2	96948915	.	C	.	.	PASS	END=96948929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	96948930	.	C	.	.	PASS	END=96948941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	96948942	.	A	.	.	PASS	END=96948971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	96948972	.	C	.	.	PASS	END=96948987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	96948988	.	C	.	.	PASS	END=96949091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	96949092	.	T	.	.	PASS	END=96949123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	96949124	.	A	.	.	PASS	END=96949141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	96949222	.	G	.	.	PASS	END=96949254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	96949255	.	A	.	.	PASS	END=96949288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	96949289	.	C	.	.	PASS	END=96949328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	96949329	.	G	.	.	PASS	END=96949412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	96949413	.	G	.	.	PASS	END=96949452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	96949453	.	T	.	.	PASS	END=96949519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	96949520	.	C	.	.	PASS	END=96949562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	96949563	.	C	.	.	PASS	END=96949635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	96949636	.	A	.	.	PASS	END=96949683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	96949684	.	G	.	.	PASS	END=96949712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	96949713	.	C	.	.	PASS	END=96949722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr2	96949723	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:61:60
chr2	96949724	.	A	.	.	PASS	END=96949727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr2	96949728	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:33:60
chr2	96949729	.	A	.	.	PASS	END=96949739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	96949740	.	A	.	.	PASS	END=96949752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	96949753	.	G	.	.	PASS	END=96949763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr2	96949764	.	G	.	.	PASS	END=96949766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:57:59
chr2	96949767	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:48:59
chr2	96949768	.	C	.	.	PASS	END=96949772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:59
chr2	96949773	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:46:59
chr2	96949774	.	A	.	.	PASS	END=96949783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:59
chr2	96949784	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:72:60
chr2	96949785	.	C	.	.	PASS	END=96949791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr2	96949792	.	T	.	.	PASS	END=96949793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:75:60
chr2	96950045	.	G	.	.	LowGQX	END=96950057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr2	96950058	.	T	.	.	PASS	END=96950060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	96950061	.	C	.	.	LowGQX	END=96950062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:27:60
chr2	96950063	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:33:60
chr2	96950064	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:27:60
chr2	96950065	.	C	.	.	PASS	END=96950075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:30:60
chr2	96950076	.	G	.	.	PASS	END=96950082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:39:60
chr2	96950083	.	G	.	.	PASS	END=96950087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr2	96950088	.	C	.	.	PASS	END=96950094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	96950095	.	C	.	.	PASS	END=96950115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	96950116	.	G	.	.	PASS	END=96950128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:60
chr2	96950129	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:54:60
chr2	96950130	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:87:60
chr2	96950131	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:57:60
chr2	96950132	.	C	.	.	PASS	END=96950156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr2	96950157	.	T	.	.	PASS	END=96950189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	96950190	.	T	.	.	PASS	END=96950250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	96950251	.	T	.	.	PASS	END=96950289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	96950290	.	T	.	.	PASS	END=96950317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:84:60
chr2	96950318	.	G	.	.	PASS	END=96950324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr2	96950325	.	T	.	.	PASS	END=96950339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	96950340	.	G	.	.	PASS	END=96950347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr2	96950348	.	A	.	.	PASS	END=96950357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	96950358	.	G	.	.	PASS	END=96950374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:33:60
chr2	96950729	.	C	.	.	PASS	END=96950735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:60
chr2	96950736	.	C	.	.	LowGQX	END=96950737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr2	96950738	.	T	.	.	PASS	END=96950739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:60
chr2	96950740	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	96950741	.	G	.	.	PASS	END=96950743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:36:60
chr2	96950744	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	96950745	.	C	.	.	PASS	END=96950747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	96950748	.	A	.	.	LowGQX	END=96950749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:21:60
chr2	96950750	.	A	.	.	PASS	END=96950752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	96950753	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	96950754	.	C	.	.	PASS	END=96950755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	96950756	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	96950757	.	G	.	.	PASS	END=96950758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr2	96950759	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:3:60
chr2	96950760	.	T	.	.	PASS	END=96950764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr2	96950765	.	G	.	.	PASS	END=96950770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	96950771	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:27:60
chr2	96950772	.	G	.	.	PASS	END=96950773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	96950774	.	C	.	.	PASS	END=96950776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:60
chr2	96950777	.	C	.	.	PASS	END=96950778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr2	96950779	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:15:2:60
chr2	96950780	.	G	.	.	PASS	END=96950791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	96950792	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	96950793	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:18:60
chr2	96950794	.	G	.	.	PASS	END=96950795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	96950796	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:60
chr2	96950797	.	T	.	.	PASS	END=96950798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	96950799	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:10:60
chr2	96950800	.	C	.	.	PASS	END=96950802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:33:60
chr2	96950803	.	T	.	.	LowGQX	END=96950804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr2	96950805	.	A	.	.	PASS	END=96950806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	96950807	.	A	.	.	LowGQX	END=96950808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr2	96950809	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	96950810	.	C	.	.	LowGQX	END=96950811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr2	96950812	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:33:60
chr2	96950813	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	96950814	.	C	.	.	PASS	END=96950824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	96950825	.	A	.	.	LowGQX	END=96950828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	96950867	.	A	.	.	PASS	END=96950892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:60
chr2	96950893	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:3:60
chr2	96950894	.	A	.	.	PASS	END=96950898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr2	96950899	.	A	.	.	PASS	END=96950909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr2	96950910	.	C	.	.	PASS	END=96950916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr2	96950917	.	C	.	.	PASS	END=96950934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	96950935	.	C	.	.	PASS	END=96950945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	96950946	.	A	.	.	PASS	END=96950963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	96950964	.	T	.	.	PASS	END=96951065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	96951066	.	A	.	.	PASS	END=96951069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	96951070	.	T	.	.	PASS	END=96951095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	96951096	.	G	.	.	PASS	END=96951100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	96951101	.	A	.	.	PASS	END=96951127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:90:60
chr2	96951128	.	A	.	.	PASS	END=96951129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:90:60
chr2	96951998	.	C	.	.	PASS	END=96952031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:94:60
chr2	96952032	.	G	.	.	PASS	END=96952057;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	96952058	.	G	.	.	PASS	END=96952139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	96952140	.	C	.	.	PASS	END=96952198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	96952199	.	A	.	.	PASS	END=96952213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	96952214	.	T	.	.	PASS	END=96952255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr2	96952256	.	T	.	.	PASS	END=96952273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr2	96952375	.	T	.	.	PASS	END=96952391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr2	96952392	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr2	96952393	.	T	.	.	PASS	END=96952408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr2	96952409	.	G	.	.	PASS	END=96952427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	96952428	.	A	.	.	PASS	END=96952461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	96952462	.	G	.	.	PASS	END=96952494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	96952495	.	A	.	.	PASS	END=96952578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	96952579	.	C	.	.	PASS	END=96952615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	96952616	.	C	.	.	PASS	END=96952647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	96952648	.	A	.	.	PASS	END=96952666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	96952693	.	A	.	.	PASS	END=96952729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	96952730	.	C	.	.	PASS	END=96952779;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	96952780	.	C	.	.	PASS	END=96952799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	96952800	.	G	.	.	PASS	END=96952832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	96952833	.	A	G	1507.61	PASS	BaseQRankSum=2.051;DP=154;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=12.4144;MQ=60;MQ0=0;MQRankSum=0.559;QD=9.79;ReadPosRankSum=-1.886;SB=-993.43	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:84,69:154:99:1538,0,2101:60:99:0.451
chr2	96952834	.	C	.	.	PASS	END=96952881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	96952882	.	C	.	.	PASS	END=96952946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	96952947	.	A	.	.	PASS	END=96952949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	96953126	.	C	.	.	PASS	END=96953142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	96953143	.	G	.	.	PASS	END=96953156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	96953157	.	G	.	.	PASS	END=96953198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr2	96953199	.	G	.	.	PASS	END=96953256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:99:60
chr2	96953257	.	A	.	.	PASS	END=96953298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	96953299	.	T	.	.	PASS	END=96953307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	96953308	.	G	.	.	PASS	END=96953338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	96953339	.	T	.	.	PASS	END=96953346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	96953550	.	G	.	.	PASS	END=96953592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:80:60
chr2	96953593	.	G	.	.	PASS	END=96953615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	96953616	.	A	.	.	PASS	END=96953638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	96953639	.	G	.	.	PASS	END=96953740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	96953741	.	C	.	.	PASS	END=96953758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	96954350	.	A	.	.	PASS	END=96954364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	96954365	.	C	.	.	PASS	END=96954385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	96954386	.	C	.	.	PASS	END=96954402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	96954403	.	G	.	.	PASS	END=96954429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	96954430	.	G	.	.	PASS	END=96954508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	96954509	.	C	.	.	PASS	END=96954535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	96954724	.	G	.	.	PASS	END=96954773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	96954774	.	C	.	.	PASS	END=96954797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	96954798	.	T	.	.	PASS	END=96954886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:90:60
chr2	96954887	.	C	.	.	PASS	END=96954906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	96954914	.	A	.	.	PASS	END=96954996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	96954997	.	A	.	.	PASS	END=96955078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	96955079	.	G	.	.	PASS	END=96955116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:88:60
chr2	96955117	.	C	.	.	PASS	END=96955139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	96955140	.	C	.	.	PASS	END=96955145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr2	96955146	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:54:60
chr2	96955147	.	T	.	.	PASS	END=96955158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:75:60
chr2	96955159	.	A	.	.	PASS	END=96955168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr2	96955486	.	G	.	.	PASS	END=96955534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	96955535	.	A	.	.	PASS	END=96955603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	96955604	.	T	.	.	PASS	END=96955619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	96955620	.	G	.	.	PASS	END=96955651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	96955652	.	T	.	.	PASS	END=96955674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr2	96955675	.	G	.	.	PASS	END=96955676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	96955677	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:42:60
chr2	96955678	.	T	.	.	PASS	END=96955683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr2	96955684	.	T	.	.	PASS	END=96955693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	96955694	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:15:60
chr2	96955695	.	G	.	.	PASS	END=96955706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	96955707	.	A	.	.	PASS	END=96955709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:60
chr2	96955710	.	C	.	.	PASS	END=96955726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	96955727	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:45:60
chr2	96955728	.	C	.	.	PASS	END=96955733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr2	96955734	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:25:60
chr2	96955735	.	C	.	.	PASS	END=96955741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:60
chr2	96955742	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:48:60
chr2	96955743	.	C	.	.	PASS	END=96955745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr2	96955746	.	A	.	.	PASS	END=96955761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	96955762	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:12:60
chr2	96955763	.	A	.	.	PASS	END=96955770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	96955771	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:17:36:60
chr2	96955772	.	C	.	.	PASS	END=96955782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	96955783	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:6:60
chr2	96955784	.	A	.	.	PASS	END=96955785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	96956013	.	C	.	.	PASS	END=96956032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	96956033	.	G	.	.	PASS	END=96956056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	96956057	.	C	.	.	PASS	END=96956100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	96956101	.	T	.	.	PASS	END=96956162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	96956163	.	G	.	.	PASS	END=96956180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	96956181	.	C	.	.	PASS	END=96956202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	96956203	.	A	.	.	PASS	END=96956220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	96956221	.	T	.	.	PASS	END=96956251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	96956252	.	T	.	.	PASS	END=96956259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr2	96956260	.	A	.	.	PASS	END=96956277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	96956278	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:69:60
chr2	96956279	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:50:60
chr2	96956280	.	G	.	.	PASS	END=96956303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr2	96956371	.	T	.	.	PASS	END=96956398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr2	96956399	.	A	.	.	PASS	END=96956400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr2	96956401	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:57:60
chr2	96956402	.	A	.	.	PASS	END=96956439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr2	96956440	.	T	.	.	PASS	END=96956462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	96956463	.	T	.	.	PASS	END=96956491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	96956492	.	A	.	.	PASS	END=96956604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	96957079	.	T	.	.	PASS	END=96957105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	96957106	.	T	.	.	PASS	END=96957134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	96957135	.	T	.	.	PASS	END=96957230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	96957231	.	G	.	.	PASS	END=96957279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	96957280	.	T	.	.	PASS	END=96957291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	96957438	.	T	.	.	PASS	END=96957481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	96957482	.	T	.	.	PASS	END=96957493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	96957494	.	A	.	.	PASS	END=96957540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	96957541	.	C	.	.	PASS	END=96957584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	96957585	.	G	.	.	PASS	END=96957621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	96957622	.	T	.	.	PASS	END=96957637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	96957638	.	C	.	.	PASS	END=96957648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	96957649	.	G	.	.	PASS	END=96957673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr2	96957674	.	T	.	.	PASS	END=96957689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr2	96958659	.	C	.	.	PASS	END=96958684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	96958685	.	G	.	.	PASS	END=96958822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	96958823	.	C	.	.	PASS	END=96958840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	96958841	.	T	.	.	PASS	END=96958884;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	96959003	.	A	.	.	PASS	END=96959016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	96959017	.	T	.	.	PASS	END=96959064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	96959065	.	G	.	.	PASS	END=96959127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	96959128	.	G	.	.	PASS	END=96959166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	96959167	.	C	.	.	PASS	END=96959176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	96959177	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:57:76:60
chr2	96959178	.	T	.	.	PASS	END=96959194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	96959195	.	A	.	.	PASS	END=96959201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr2	96959202	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:48:60
chr2	96959203	.	T	.	.	PASS	END=96959217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:66:60
chr2	96959218	.	T	.	.	PASS	END=96959231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr2	96959232	.	G	.	.	PASS	END=96959241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	96959242	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:12:60
chr2	96959243	.	T	.	.	PASS	END=96959253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	96959254	.	A	.	.	PASS	END=96959265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:39:60
chr2	96959266	.	G	.	.	PASS	END=96959268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	96959269	.	A	.	.	PASS	END=96959271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:45:60
chr2	96959272	.	A	.	.	PASS	END=96959273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	96959274	.	C	.	.	PASS	END=96959293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	96959294	.	A	.	.	PASS	END=96959298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	96961175	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:0:60
chr2	96961176	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:36:60
chr2	96961177	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr2	96961178	.	C	.	.	PASS	END=96961180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	96961181	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr2	96961182	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:33:60
chr2	96961183	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:27:60
chr2	96961184	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:11:30:60
chr2	96961185	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:21:60
chr2	96961186	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr2	96961187	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:24:60
chr2	96961188	.	C	.	.	PASS	END=96961189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr2	96961190	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	96961191	.	C	.	.	PASS	END=96961200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	96961201	.	T	.	.	PASS	END=96961202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:60
chr2	96961203	.	T	.	.	PASS	END=96961212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr2	96961213	.	G	.	.	PASS	END=96961240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:72:60
chr2	96961241	.	C	.	.	PASS	END=96961257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr2	96961258	.	T	.	.	PASS	END=96961307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	96961308	.	A	.	.	PASS	END=96961332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	96961333	.	C	.	.	PASS	END=96961401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	96961402	.	G	.	.	PASS	END=96961445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	96961446	.	A	.	.	PASS	END=96961447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	96962223	.	A	.	.	PASS	END=96962242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	96962243	.	T	.	.	PASS	END=96962267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr2	96962268	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:30:60
chr2	96962269	.	C	.	.	PASS	END=96962274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:60:60
chr2	96962275	.	T	.	.	PASS	END=96962287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr2	96962288	.	C	.	.	PASS	END=96962307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr2	96962308	.	G	.	.	PASS	END=96962349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:97:60
chr2	96962350	.	T	.	.	PASS	END=96962450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	96962451	.	A	.	.	PASS	END=96962480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	96962620	.	G	.	.	PASS	END=96962657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	96962658	.	G	.	.	PASS	END=96962716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr2	96962717	.	C	.	.	PASS	END=96962840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr2	96962841	.	T	.	.	PASS	END=96962858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr2	96962859	.	A	G	2184.82	PASS	BaseQRankSum=1.664;DP=156;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=7.6178;MQ=60;MQ0=0;MQRankSum=-2.363;QD=14.01;ReadPosRankSum=-0.865;SB=-939.87	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:74,81:156:99:2215,0,1891:60:99:0.523
chr2	96963050	.	C	.	.	PASS	END=96963134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	96963135	.	G	.	.	PASS	END=96963185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	96963186	.	G	.	.	PASS	END=96963298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	96963299	.	C	.	.	PASS	END=96963419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	96963420	.	T	.	.	PASS	END=96963509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	96963971	.	C	.	.	PASS	END=96963975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	96963976	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:42:60
chr2	96963977	.	A	.	.	PASS	END=96963984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:51:60
chr2	96963985	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:35:60
chr2	96963986	.	T	.	.	PASS	END=96964003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:63:60
chr2	96964004	.	A	.	.	PASS	END=96964074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr2	96964075	.	G	.	.	PASS	END=96964163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	96964164	.	C	.	.	PASS	END=96964209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	96964290	.	A	.	.	PASS	END=96964298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:96:60
chr2	96964299	.	C	.	.	PASS	END=96964327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	96964328	.	A	.	.	PASS	END=96964350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	96964351	.	G	.	.	PASS	END=96964449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	96964450	.	G	.	.	PASS	END=96964488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	96964489	.	T	.	.	PASS	END=96964491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	96964502	.	C	.	.	PASS	END=96964551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	96964552	.	C	.	.	PASS	END=96964596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	96964597	.	T	.	.	PASS	END=96964666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	96964667	.	C	.	.	PASS	END=96964701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	96964702	.	C	.	.	PASS	END=96964730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	96964731	.	T	.	.	PASS	END=96964755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	96964756	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:99:60
chr2	96965016	.	T	.	.	PASS	END=96965018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:90:60
chr2	96965019	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:54:60
chr2	96965020	.	A	.	.	PASS	END=96965052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:89:60
chr2	96965053	.	C	.	.	PASS	END=96965094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:97:60
chr2	96965095	.	G	.	.	PASS	END=96965202;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	96965203	.	T	.	.	PASS	END=96965216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	96966685	.	A	.	.	PASS	END=96966716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:87:60
chr2	96966717	.	G	.	.	PASS	END=96966734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	96966735	.	C	.	.	PASS	END=96966762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	96966763	.	C	.	.	PASS	END=96966788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	96966789	.	C	.	.	PASS	END=96966842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	96967211	.	G	.	.	PASS	END=96967215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:90:60
chr2	96967216	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:63:60
chr2	96967217	.	A	.	.	PASS	END=96967241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr2	96967242	.	A	.	.	PASS	END=96967281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	96967282	.	T	.	.	PASS	END=96967343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	96967344	.	T	.	.	PASS	END=96967391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:82:60
chr2	96967392	.	C	.	.	PASS	END=96967411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	96967412	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:66:60
chr2	96967413	.	A	.	.	PASS	END=96967437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr2	96967438	.	C	.	.	PASS	END=96967449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr2	96967450	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:42:60
chr2	96967451	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:84:60
chr2	96967452	.	T	.	.	PASS	END=96967458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:63:60
chr2	96967459	.	T	.	.	PASS	END=96967463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr2	96967464	.	A	.	.	PASS	END=96967477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:63:60
chr2	96967478	.	A	.	.	PASS	END=96967496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	96967497	.	G	.	.	PASS	END=96967500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr2	96967501	.	A	.	.	PASS	END=96967505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr2	96968846	.	G	.	.	PASS	END=96968883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	96968884	.	A	.	.	PASS	END=96968967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	96968968	.	G	.	.	PASS	END=96969000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr2	96969001	.	C	.	.	PASS	END=96969076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:60
chr2	96969077	.	C	.	.	PASS	END=96969119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr2	96970392	.	G	.	.	PASS	END=96970436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr2	96970437	.	A	.	.	PASS	END=96970494;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	96970495	.	C	.	.	PASS	END=96970573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	96970574	.	A	.	.	PASS	END=96970644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	96970645	.	C	.	.	PASS	END=96970656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	96970657	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:99:60
chr2	96971080	.	C	.	.	PASS	END=96971112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:94:60
chr2	96971113	.	C	.	.	PASS	END=96971165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:95:60
chr2	96971166	.	C	.	.	PASS	END=96971210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:96:60
chr2	96971211	.	C	.	.	PASS	END=96971226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr2	96991533	.	A	.	.	LowGQX	END=96991597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96991598	.	T	.	.	LowGQX	.	GT	./.
chr2	96991599	.	A	.	.	LowGQX	END=96991601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96991602	.	T	.	.	LowGQX	.	GT	./.
chr2	96991603	.	T	.	.	LowGQX	END=96991618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96991619	.	T	.	.	LowGQX	.	GT	./.
chr2	96991620	.	G	.	.	LowGQX	END=96991624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96991625	.	A	.	.	LowGQX	END=96991632	GT	./.
chr2	96991942	.	A	.	.	LowGQX	END=96992046	GT	./.
chr2	96992344	.	A	.	.	LowGQX	END=96993132	GT	./.
chr2	96993133	.	A	.	.	LowGQX	END=96993274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	96993275	.	C	.	.	LowGQX	END=96993433	GT	./.
chr2	96993434	.	C	.	.	LowGQX	END=96993455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993456	.	T	.	.	LowGQX	.	GT	./.
chr2	96993457	.	C	.	.	LowGQX	END=96993461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993462	.	C	.	.	LowGQX	END=96993463	GT	./.
chr2	96993464	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993465	.	T	.	.	LowGQX	END=96993466	GT	./.
chr2	96993467	.	G	.	.	LowGQX	END=96993469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993470	.	C	.	.	LowGQX	.	GT	./.
chr2	96993471	.	C	.	.	LowGQX	END=96993473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993474	.	G	.	.	LowGQX	.	GT	./.
chr2	96993475	.	G	.	.	LowGQX	END=96993484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993485	.	A	.	.	LowGQX	END=96993487	GT	./.
chr2	96993488	.	A	.	.	LowGQX	END=96993492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993493	.	C	.	.	LowGQX	.	GT	./.
chr2	96993494	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993495	.	T	.	.	LowGQX	.	GT	./.
chr2	96993496	.	T	.	.	LowGQX	END=96993497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993498	.	G	.	.	LowGQX	.	GT	./.
chr2	96993499	.	T	.	.	LowGQX	END=96993505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993506	.	G	.	.	LowGQX	END=96993507	GT	./.
chr2	96993508	.	T	.	.	LowGQX	END=96993513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993514	.	A	.	.	LowGQX	.	GT	./.
chr2	96993515	.	G	.	.	LowGQX	END=96993522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993523	.	A	.	.	LowGQX	.	GT	./.
chr2	96993524	.	C	.	.	LowGQX	END=96993526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993527	.	G	.	.	LowGQX	.	GT	./.
chr2	96993528	.	G	.	.	LowGQX	END=96993536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993537	.	A	.	.	LowGQX	END=96993539	GT	./.
chr2	96993540	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993541	.	G	.	.	LowGQX	.	GT	./.
chr2	96993542	.	T	.	.	LowGQX	END=96993546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993547	.	A	.	.	LowGQX	END=96993549	GT	./.
chr2	96993550	.	G	.	.	LowGQX	END=96993556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993557	.	G	.	.	LowGQX	END=96993558	GT	./.
chr2	96993559	.	C	.	.	LowGQX	END=96993560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993561	.	T	.	.	LowGQX	END=96993566	GT	./.
chr2	96993567	.	G	.	.	LowGQX	END=96993576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993577	.	A	.	.	LowGQX	END=96993578	GT	./.
chr2	96993579	.	C	.	.	LowGQX	END=96993580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993581	.	G	.	.	LowGQX	.	GT	./.
chr2	96993582	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993583	.	T	.	.	LowGQX	END=96993694	GT	./.
chr2	96993695	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993696	.	A	.	.	LowGQX	END=96993697	GT	./.
chr2	96993698	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993699	.	C	.	.	LowGQX	END=96993700	GT	./.
chr2	96993701	.	C	.	.	LowGQX	END=96993704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993705	.	T	.	.	LowGQX	END=96993707	GT	./.
chr2	96993708	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993709	.	A	.	.	LowGQX	END=96993710	GT	./.
chr2	96993711	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993712	.	A	.	.	LowGQX	.	GT	./.
chr2	96993713	.	T	.	.	LowGQX	END=96993721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993722	.	A	.	.	LowGQX	END=96993724	GT	./.
chr2	96993725	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993726	.	C	.	.	LowGQX	.	GT	./.
chr2	96993727	.	T	.	.	LowGQX	END=96993728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993729	.	A	.	.	LowGQX	END=96993730	GT	./.
chr2	96993731	.	G	.	.	LowGQX	END=96993732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993733	.	A	.	.	LowGQX	.	GT	./.
chr2	96993734	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993735	.	C	.	.	LowGQX	END=96993736	GT	./.
chr2	96993737	.	C	.	.	LowGQX	END=96993742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993743	.	A	.	.	LowGQX	.	GT	./.
chr2	96993744	.	C	.	.	LowGQX	END=96993747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993748	.	T	.	.	LowGQX	.	GT	./.
chr2	96993749	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993750	.	C	.	.	LowGQX	.	GT	./.
chr2	96993751	.	C	.	.	LowGQX	END=96993755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993756	.	A	.	.	LowGQX	.	GT	./.
chr2	96993757	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	96993758	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993759	.	G	.	.	LowGQX	END=96993760	GT	./.
chr2	96993761	.	C	.	.	LowGQX	END=96993771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993772	.	A	.	.	LowGQX	.	GT	./.
chr2	96993773	.	C	.	.	LowGQX	END=96993774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993775	.	T	.	.	LowGQX	.	GT	./.
chr2	96993776	.	G	.	.	LowGQX	END=96993777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993778	.	T	.	.	LowGQX	.	GT	./.
chr2	96993779	.	C	.	.	LowGQX	END=96993782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993783	.	C	.	.	LowGQX	END=96993784	GT	./.
chr2	96993785	.	G	.	.	LowGQX	END=96993787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993788	.	G	.	.	LowGQX	.	GT	./.
chr2	96993789	.	C	.	.	LowGQX	END=96993790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993791	.	C	.	.	LowGQX	.	GT	./.
chr2	96993792	.	C	.	.	LowGQX	END=96993805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993806	.	G	.	.	LowGQX	.	GT	./.
chr2	96993807	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993808	.	T	.	.	LowGQX	.	GT	./.
chr2	96993809	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993810	.	T	.	.	LowGQX	.	GT	./.
chr2	96993811	.	T	.	.	LowGQX	END=96993813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993814	.	G	.	.	LowGQX	.	GT	./.
chr2	96993815	.	C	.	.	LowGQX	END=96993821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993822	.	C	.	.	LowGQX	END=96993823	GT	./.
chr2	96993824	.	C	.	.	LowGQX	END=96993829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993830	.	A	.	.	LowGQX	.	GT	./.
chr2	96993831	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993832	.	G	.	.	LowGQX	.	GT	./.
chr2	96993833	.	G	.	.	LowGQX	END=96993845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	96993846	.	T	.	.	LowGQX	END=96994039	GT	./.
chr2	97001468	.	G	.	.	LowGQX	END=97001545	GT	./.
chr2	97001546	.	G	.	.	LowGQX	END=97001627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97007378	.	A	.	.	LowGQX	END=97007634	GT	./.
chr2	97007784	.	T	.	.	LowGQX	END=97007883	GT	./.
chr2	97008491	.	C	.	.	LowGQX	END=97008590	GT	./.
chr2	97008902	.	A	.	.	LowGQX	END=97009044	GT	./.
chr2	97009841	.	A	.	.	LowGQX	END=97009969	GT	./.
chr2	97017567	.	A	.	.	LowGQX	END=97017760	GT	./.
chr2	97019042	.	A	.	.	LowGQX	END=97019141	GT	./.
chr2	97019919	.	A	.	.	LowGQX	END=97020128	GT	./.
chr2	97024781	.	A	.	.	LowGQX	END=97024939	GT	./.
chr2	97025819	.	T	.	.	LowGQX	END=97025989	GT	./.
chr2	97026324	.	A	.	.	LowGQX	END=97026450	GT	./.
chr2	97030217	.	A	.	.	LowGQX	END=97030331	GT	./.
chr2	97031612	.	A	.	.	LowGQX	END=97031692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97031693	.	G	.	.	LowGQX	.	GT	./.
chr2	97031694	.	C	.	.	LowGQX	END=97031708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97031709	.	A	.	.	LowGQX	END=97031798	GT	./.
chr2	97032993	.	A	.	.	LowGQX	END=97033113	GT	./.
chr2	97034706	.	T	.	.	LowGQX	END=97034805	GT	./.
chr2	97035151	.	C	.	.	LowGQX	END=97035250	GT	./.
chr2	97039010	.	A	.	.	LowGQX	END=97039109	GT	./.
chr2	97163981	.	T	.	.	LowGQX	END=97164106	GT	./.
chr2	97164107	.	G	.	.	LowGQX	END=97164164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97164165	.	C	A	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	97164166	.	A	.	.	LowGQX	END=97164183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97165101	.	G	.	.	LowGQX	END=97165200	GT	./.
chr2	97166015	.	C	.	.	LowGQX	END=97166661	GT	./.
chr2	97170960	.	G	.	.	LowGQX	END=97171059	GT	./.
chr2	97202456	.	G	.	.	LowGQX	END=97202615	GT	./.
chr2	97213137	.	A	.	.	LowGQX	END=97213256	GT	./.
chr2	97215056	.	A	.	.	LowGQX	END=97215223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97215224	.	G	.	.	LowGQX	END=97215235	GT	./.
chr2	97215407	.	C	.	.	LowGQX	END=97215566	GT	./.
chr2	97215752	.	G	.	.	LowGQX	END=97216024	GT	./.
chr2	97216309	.	A	.	.	LowGQX	END=97216360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97216361	.	T	.	.	LowGQX	END=97216472	GT	./.
chr2	97216834	.	A	.	.	LowGQX	END=97217631	GT	./.
chr2	97217632	.	G	.	.	LowGQX	END=97217715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97217716	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97217717	.	C	.	.	LowGQX	END=97217743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97217744	.	G	.	.	LowGQX	END=97217763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:43
chr2	97217764	.	A	.	.	LowGQX	END=97217792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97217793	.	A	.	.	LowGQX	END=97218366	GT	./.
chr2	97258964	.	C	.	.	LowGQX	END=97258995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97258996	.	T	.	.	LowGQX	END=97259017	GT	./.
chr2	97259018	.	G	.	.	LowGQX	END=97259030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97259031	.	C	.	.	LowGQX	.	GT	./.
chr2	97259032	.	C	.	.	LowGQX	END=97259037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97259038	.	C	.	.	LowGQX	.	GT	./.
chr2	97259039	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97259040	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97259041	.	T	.	.	LowGQX	END=97259043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97259044	.	C	.	.	LowGQX	.	GT	./.
chr2	97259045	.	C	.	.	LowGQX	END=97259053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97259054	.	C	.	.	LowGQX	.	GT	./.
chr2	97259055	.	A	.	.	LowGQX	END=97259056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97259057	.	G	.	.	LowGQX	.	GT	./.
chr2	97259058	.	G	.	.	LowGQX	END=97259063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97261308	.	C	.	.	LowGQX	END=97261407	GT	./.
chr2	97267317	.	T	.	.	LowGQX	END=97267513	GT	./.
chr2	97267782	.	C	.	.	LowGQX	END=97268141	GT	./.
chr2	97268489	.	C	.	.	LowGQX	END=97268647	GT	./.
chr2	97269986	.	C	.	.	LowGQX	END=97270050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	97270051	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	97270052	.	G	.	.	LowGQX	END=97270095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97270096	.	T	.	.	LowGQX	END=97270117	GT	./.
chr2	97270508	.	A	.	.	LowGQX	END=97270522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97270523	.	T	.	.	LowGQX	.	GT	./.
chr2	97270524	.	G	.	.	LowGQX	END=97270537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97270538	.	T	.	.	LowGQX	.	GT	./.
chr2	97270539	.	G	.	.	LowGQX	END=97270546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97270547	.	T	.	.	LowGQX	.	GT	./.
chr2	97270548	.	G	.	.	LowGQX	END=97270571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97270572	.	T	.	.	LowGQX	.	GT	./.
chr2	97270573	.	G	.	.	LowGQX	END=97270607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97271056	.	C	.	.	LowGQX	.	GT	./.
chr2	97271057	.	C	.	.	LowGQX	END=97271062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97271063	.	G	.	.	LowGQX	.	GT	./.
chr2	97271064	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97271065	.	G	.	.	LowGQX	.	GT	./.
chr2	97271066	.	C	.	.	LowGQX	END=97271068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97271069	.	T	.	.	LowGQX	.	GT	./.
chr2	97271070	.	T	.	.	LowGQX	END=97271071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97271072	.	C	.	.	LowGQX	.	GT	./.
chr2	97271073	.	T	.	.	LowGQX	END=97271082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97271083	.	G	.	.	LowGQX	.	GT	./.
chr2	97271084	.	C	.	.	LowGQX	END=97271085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97271086	.	C	.	.	LowGQX	.	GT	./.
chr2	97271087	.	A	.	.	LowGQX	END=97271089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97271090	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	97271091	.	C	.	.	LowGQX	END=97271092	GT	./.
chr2	97271093	.	C	.	.	LowGQX	END=97271094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97271095	.	C	.	.	LowGQX	.	GT	./.
chr2	97271096	.	C	.	.	LowGQX	END=97271098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97271099	.	C	.	.	LowGQX	END=97271248	GT	./.
chr2	97272696	.	G	.	.	LowGQX	END=97272785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97272786	.	T	.	.	LowGQX	.	GT	./.
chr2	97272787	.	G	.	.	LowGQX	END=97272790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97272791	.	T	.	.	LowGQX	END=97272795	GT	./.
chr2	97274244	.	C	.	.	LowGQX	END=97274342	GT	./.
chr2	97274343	.	A	.	.	LowGQX	END=97274345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97274346	.	G	.	.	LowGQX	.	GT	./.
chr2	97274347	.	T	.	.	LowGQX	END=97274352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97274353	.	C	.	.	LowGQX	.	GT	./.
chr2	97274354	.	T	.	.	LowGQX	END=97274358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97274359	.	T	.	.	LowGQX	END=97274360	GT	./.
chr2	97274361	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97274362	.	T	.	.	LowGQX	END=97274363	GT	./.
chr2	97274364	.	G	.	.	LowGQX	END=97274369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97274370	.	G	.	.	LowGQX	.	GT	./.
chr2	97274371	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97274372	.	G	.	.	LowGQX	END=97274373	GT	./.
chr2	97274374	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97274375	.	G	.	.	LowGQX	.	GT	./.
chr2	97274376	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97274377	.	G	.	.	LowGQX	.	GT	./.
chr2	97274378	.	G	.	.	LowGQX	END=97274381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97274382	.	C	.	.	LowGQX	.	GT	./.
chr2	97274383	.	T	.	.	LowGQX	END=97274392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97274393	.	G	.	.	LowGQX	.	GT	./.
chr2	97274394	.	G	.	.	LowGQX	END=97274399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97274400	.	T	.	.	LowGQX	END=97274401	GT	./.
chr2	97274600	.	C	.	.	LowGQX	END=97274603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97274604	.	T	.	.	LowGQX	END=97274801	GT	./.
chr2	97275218	.	C	.	.	LowGQX	END=97275317	GT	./.
chr2	97276462	.	C	.	.	LowGQX	END=97276620	GT	./.
chr2	97276788	.	A	.	.	LowGQX	END=97276887	GT	./.
chr2	97277969	.	A	.	.	LowGQX	END=97278029	GT	./.
chr2	97278030	.	C	.	.	LowGQX	END=97278037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97278038	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97278039	.	C	.	.	LowGQX	END=97278046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97278047	.	C	.	.	LowGQX	.	GT	./.
chr2	97278048	.	A	.	.	LowGQX	END=97278052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97278053	.	A	.	.	LowGQX	.	GT	./.
chr2	97278054	.	T	.	.	LowGQX	END=97278055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97278056	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97278057	.	A	.	.	LowGQX	END=97278061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97278062	.	A	.	.	LowGQX	.	GT	./.
chr2	97278063	.	T	.	.	LowGQX	END=97278066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97278067	.	T	.	.	LowGQX	.	GT	./.
chr2	97278068	.	T	.	.	LowGQX	END=97278077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97278078	.	A	.	.	LowGQX	.	GT	./.
chr2	97278079	.	A	.	.	LowGQX	END=97278081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97278082	.	G	.	.	LowGQX	.	GT	./.
chr2	97278083	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97278084	.	T	.	.	LowGQX	.	GT	./.
chr2	97278085	.	G	.	.	LowGQX	END=97278090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97278198	.	C	.	.	LowGQX	END=97278300	GT	./.
chr2	97278554	.	C	.	.	LowGQX	END=97278671	GT	./.
chr2	97279224	.	C	.	.	LowGQX	END=97279356	GT	./.
chr2	97281220	.	G	.	.	LowGQX	END=97281268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97281269	.	A	.	.	LowGQX	END=97281319	GT	./.
chr2	97285095	.	C	.	.	LowGQX	END=97285106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97285107	.	G	.	.	LowGQX	.	GT	./.
chr2	97285108	.	C	.	.	LowGQX	END=97285117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97285118	.	G	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr2	97285119	.	C	.	.	LowGQX	END=97285211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97285212	.	C	.	.	LowGQX	.	GT	./.
chr2	97285213	.	C	.	.	LowGQX	END=97285235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97285236	.	C	.	.	LowGQX	.	GT	./.
chr2	97285237	.	A	.	.	LowGQX	END=97285243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97285244	.	T	.	.	LowGQX	.	GT	./.
chr2	97285245	.	C	.	.	LowGQX	END=97285258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97285259	.	C	.	.	LowGQX	.	GT	./.
chr2	97285260	.	G	.	.	LowGQX	END=97285269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97285270	.	C	.	.	LowGQX	.	GT	./.
chr2	97285271	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97285272	.	C	.	.	LowGQX	END=97285281	GT	./.
chr2	97285404	.	C	.	.	LowGQX	END=97285408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97285409	.	C	.	.	LowGQX	.	GT	./.
chr2	97285410	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97285411	.	C	.	.	LowGQX	END=97285425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97285426	.	G	.	.	LowGQX	.	GT	./.
chr2	97285427	.	G	.	.	LowGQX	END=97285437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97285438	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97285439	.	A	.	.	LowGQX	END=97285445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97285446	.	A	.	.	LowGQX	.	GT	./.
chr2	97285447	.	G	.	.	LowGQX	END=97285493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97285494	.	C	.	.	LowGQX	.	GT	./.
chr2	97285495	.	C	.	.	LowGQX	END=97285503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97293619	.	T	.	.	LowGQX	END=97293718	GT	./.
chr2	97293729	.	A	.	.	LowGQX	END=97293828	GT	./.
chr2	97297048	.	C	.	.	LowGQX	END=97297219	GT	./.
chr2	97297231	.	T	.	.	LowGQX	END=97297330	GT	./.
chr2	97302657	.	C	.	.	LowGQX	END=97302872	GT	./.
chr2	97308566	.	T	.	.	LowGQX	END=97308588	GT	./.
chr2	97308589	.	G	.	.	LowGQX	END=97308665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97312114	.	G	.	.	LowGQX	END=97312200	GT	./.
chr2	97312201	.	G	.	.	LowGQX	END=97312213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97312797	.	A	.	.	LowGQX	END=97312896	GT	./.
chr2	97313514	.	G	.	.	LowGQX	END=97313623	GT	./.
chr2	97315337	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	97315338	.	C	.	.	LowGQX	END=97315345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97315346	.	C	.	.	LowGQX	.	GT	./.
chr2	97315347	.	C	.	.	LowGQX	END=97315366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97315367	.	T	.	.	LowGQX	.	GT	./.
chr2	97315368	.	C	.	.	LowGQX	END=97315373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97315374	.	A	.	.	LowGQX	.	GT	./.
chr2	97315375	.	C	.	.	LowGQX	END=97315380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97315381	.	G	.	.	LowGQX	.	GT	./.
chr2	97315382	.	C	.	.	LowGQX	END=97315385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97315386	.	C	.	.	LowGQX	.	GT	./.
chr2	97315387	.	A	.	.	LowGQX	END=97315411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97315412	.	C	.	.	LowGQX	.	GT	./.
chr2	97315413	.	A	.	.	LowGQX	END=97315436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97315916	.	G	.	.	LowGQX	END=97316026	GT	./.
chr2	97317628	.	G	.	.	LowGQX	END=97317766	GT	./.
chr2	97319306	.	C	.	.	LowGQX	END=97319457	GT	./.
chr2	97325987	.	C	.	.	LowGQX	END=97326142	GT	./.
chr2	97327061	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327062	.	G	.	.	LowGQX	.	GT	./.
chr2	97327063	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327064	.	C	.	.	LowGQX	.	GT	./.
chr2	97327065	.	A	.	.	LowGQX	END=97327067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327068	.	C	.	.	LowGQX	.	GT	./.
chr2	97327069	.	A	.	.	LowGQX	END=97327077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327078	.	G	.	.	LowGQX	.	GT	./.
chr2	97327079	.	A	.	.	LowGQX	END=97327080;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327081	.	A	.	.	LowGQX	.	GT	./.
chr2	97327082	.	T	.	.	LowGQX	END=97327083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327084	.	G	.	.	LowGQX	.	GT	./.
chr2	97327085	.	C	.	.	LowGQX	END=97327086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327087	.	A	.	.	LowGQX	.	GT	./.
chr2	97327088	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327089	.	G	.	.	LowGQX	.	GT	./.
chr2	97327090	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327091	.	C	.	.	LowGQX	.	GT	./.
chr2	97327092	.	T	.	.	LowGQX	END=97327096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327097	.	C	.	.	LowGQX	.	GT	./.
chr2	97327098	.	A	.	.	LowGQX	END=97327102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327103	.	A	.	.	LowGQX	.	GT	./.
chr2	97327104	.	A	.	.	LowGQX	END=97327108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327109	.	C	.	.	LowGQX	.	GT	./.
chr2	97327110	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327111	.	T	.	.	LowGQX	.	GT	./.
chr2	97327112	.	G	.	.	LowGQX	END=97327113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327114	.	C	.	.	LowGQX	END=97327115	GT	./.
chr2	97327116	.	G	.	.	LowGQX	END=97327117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327118	.	G	.	.	LowGQX	.	GT	./.
chr2	97327119	.	G	.	.	LowGQX	END=97327123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327124	.	A	.	.	LowGQX	.	GT	./.
chr2	97327125	.	C	.	.	LowGQX	END=97327130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327131	.	A	.	.	LowGQX	.	GT	./.
chr2	97327132	.	C	.	.	LowGQX	END=97327136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327137	.	A	.	.	LowGQX	END=97327138	GT	./.
chr2	97327139	.	G	.	.	LowGQX	END=97327151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327152	.	C	.	.	LowGQX	END=97327153	GT	./.
chr2	97327154	.	C	.	.	LowGQX	END=97327156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327157	.	G	.	.	LowGQX	.	GT	./.
chr2	97327158	.	G	.	.	LowGQX	END=97327162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327163	.	G	.	.	LowGQX	.	GT	./.
chr2	97327164	.	G	.	.	LowGQX	END=97327166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97327167	.	A	.	.	LowGQX	END=97327220	GT	./.
chr2	97327404	.	G	.	.	LowGQX	END=97327528	GT	./.
chr2	97327928	.	T	.	.	LowGQX	END=97328027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97329160	.	C	.	.	LowGQX	END=97329259	GT	./.
chr2	97334460	.	C	.	.	LowGQX	END=97334559	GT	./.
chr2	97334622	.	G	.	.	LowGQX	END=97334741	GT	./.
chr2	97334777	.	C	.	.	LowGQX	END=97334876	GT	./.
chr2	97335855	.	G	.	.	LowGQX	END=97335984	GT	./.
chr2	97338813	.	G	.	.	LowGQX	END=97338932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97338933	.	G	.	.	LowGQX	END=97338991	GT	./.
chr2	97350063	.	G	.	.	LowGQX	END=97350188	GT	./.
chr2	97351015	.	T	.	.	LowGQX	END=97351081	GT	./.
chr2	97351082	.	C	.	.	LowGQX	END=97351166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97351676	.	G	.	.	LowGQX	END=97351854	GT	./.
chr2	97351931	.	G	.	.	LowGQX	END=97352087	GT	./.
chr2	97353552	.	G	.	.	LowGQX	END=97353684	GT	./.
chr2	97354928	.	C	.	.	LowGQX	END=97355003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97355004	.	T	.	.	LowGQX	END=97355019	GT	./.
chr2	97355020	.	A	.	.	LowGQX	END=97355050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97355051	.	G	.	.	LowGQX	.	GT	./.
chr2	97355052	.	G	.	.	LowGQX	END=97355062;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97355063	.	A	.	.	LowGQX	.	GT	./.
chr2	97355064	.	C	.	.	LowGQX	END=97355138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97355328	.	C	.	.	LowGQX	END=97355495	GT	./.
chr2	97356222	.	A	.	.	LowGQX	END=97356321	GT	./.
chr2	97356926	.	G	.	.	LowGQX	END=97357090	GT	./.
chr2	97357181	.	G	.	.	LowGQX	END=97357235	GT	./.
chr2	97357236	.	T	.	.	LowGQX	END=97357245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357246	.	A	.	.	LowGQX	.	GT	./.
chr2	97357247	.	C	.	.	LowGQX	END=97357349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357459	.	G	.	.	LowGQX	END=97357482	GT	./.
chr2	97357483	.	G	.	.	LowGQX	END=97357517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357518	.	G	.	.	LowGQX	.	GT	./.
chr2	97357519	.	G	.	.	LowGQX	END=97357523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357524	.	G	.	.	LowGQX	.	GT	./.
chr2	97357525	.	C	.	.	LowGQX	END=97357539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357540	.	G	.	.	LowGQX	.	GT	./.
chr2	97357541	.	G	.	.	LowGQX	END=97357545;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357546	.	A	.	.	LowGQX	.	GT	./.
chr2	97357547	.	C	.	.	LowGQX	END=97357559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357560	.	A	.	.	LowGQX	.	GT	./.
chr2	97357561	.	G	.	.	LowGQX	END=97357565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357566	.	T	.	.	LowGQX	END=97357567	GT	./.
chr2	97357568	.	G	.	.	LowGQX	END=97357571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357572	.	T	.	.	LowGQX	.	GT	./.
chr2	97357573	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357574	.	A	.	.	LowGQX	END=97357575	GT	./.
chr2	97357576	.	A	.	.	LowGQX	END=97357580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357581	.	A	.	.	LowGQX	.	GT	./.
chr2	97357582	.	C	.	.	LowGQX	END=97357587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357588	.	G	.	.	LowGQX	.	GT	./.
chr2	97357589	.	A	.	.	LowGQX	END=97357598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357599	.	A	.	.	LowGQX	END=97357600	GT	./.
chr2	97357601	.	A	.	.	LowGQX	END=97357603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357604	.	A	.	.	LowGQX	.	GT	./.
chr2	97357605	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357606	.	G	.	.	LowGQX	.	GT	./.
chr2	97357607	.	A	.	.	LowGQX	END=97357622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97357623	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97357624	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97357625	.	G	.	.	LowGQX	END=97357626	GT	./.
chr2	97357627	.	C	.	.	LowGQX	END=97357628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97357629	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97357630	.	A	.	.	LowGQX	END=97357634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357635	.	T	.	.	LowGQX	.	GT	./.
chr2	97357636	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357637	.	A	.	.	LowGQX	.	GT	./.
chr2	97357638	.	G	.	.	LowGQX	END=97357641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357642	.	C	.	.	LowGQX	.	GT	./.
chr2	97357643	.	C	.	.	LowGQX	END=97357649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357650	.	G	.	.	LowGQX	.	GT	./.
chr2	97357651	.	G	.	.	LowGQX	END=97357654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357655	.	G	.	.	LowGQX	.	GT	./.
chr2	97357656	.	A	.	.	LowGQX	END=97357672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357673	.	T	.	.	LowGQX	END=97357674	GT	./.
chr2	97357675	.	G	.	.	LowGQX	END=97357676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357677	.	C	.	.	LowGQX	.	GT	./.
chr2	97357678	.	C	.	.	LowGQX	END=97357679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357680	.	T	.	.	LowGQX	.	GT	./.
chr2	97357681	.	C	.	.	LowGQX	END=97357688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357689	.	G	.	.	LowGQX	.	GT	./.
chr2	97357690	.	C	.	.	LowGQX	END=97357692;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357693	.	C	.	.	LowGQX	.	GT	./.
chr2	97357694	.	T	.	.	LowGQX	END=97357698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357699	.	T	.	.	LowGQX	.	GT	./.
chr2	97357700	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97357830	.	T	.	.	LowGQX	END=97357929	GT	./.
chr2	97359242	.	G	.	.	LowGQX	END=97359424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97359647	.	G	.	.	LowGQX	END=97359809	GT	./.
chr2	97360096	.	G	.	.	LowGQX	END=97360097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97360098	.	A	.	.	LowGQX	END=97360108	GT	./.
chr2	97360109	.	A	.	.	LowGQX	END=97360124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97360125	.	T	.	.	LowGQX	END=97360127	GT	./.
chr2	97360128	.	G	.	.	LowGQX	END=97360131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97360132	.	T	.	.	LowGQX	.	GT	./.
chr2	97360133	.	C	.	.	LowGQX	END=97360201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	97361215	.	C	.	.	LowGQX	END=97361398	GT	./.
chr2	97361478	.	G	.	.	LowGQX	END=97361641	GT	./.
chr2	97361752	.	C	.	.	LowGQX	END=97361851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97363238	.	C	.	.	LowGQX	END=97363309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97363310	.	A	.	.	LowGQX	END=97363337	GT	./.
chr2	97363396	.	G	.	.	LowGQX	END=97363498	GT	./.
chr2	97363773	.	G	.	.	LowGQX	END=97363893	GT	./.
chr2	97364407	.	G	.	.	LowGQX	END=97364569	GT	./.
chr2	97364778	.	C	.	.	LowGQX	END=97364877	GT	./.
chr2	97365286	.	G	.	.	LowGQX	END=97365457	GT	./.
chr2	97365668	.	G	.	.	LowGQX	END=97365817	GT	./.
chr2	97366068	.	G	.	.	LowGQX	END=97366208	GT	./.
chr2	97367686	.	C	.	.	LowGQX	END=97367785	GT	./.
chr2	97368015	.	G	.	.	LowGQX	END=97368138	GT	./.
chr2	97368336	.	G	.	.	LowGQX	END=97368440	GT	./.
chr2	97368441	.	A	.	.	LowGQX	END=97368478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97368714	.	G	.	.	LowGQX	END=97368814	GT	./.
chr2	97368889	.	G	.	.	LowGQX	END=97369083	GT	./.
chr2	97369259	.	G	.	.	LowGQX	END=97369369	GT	./.
chr2	97369951	.	G	.	.	LowGQX	END=97370099	GT	./.
chr2	97370204	.	G	.	.	LowGQX	END=97370429	GT	./.
chr2	97372991	.	G	.	.	LowGQX	END=97373137	GT	./.
chr2	97373449	.	A	.	.	LowGQX	END=97373572	GT	./.
chr2	97377391	.	A	.	.	LowGQX	END=97377509	GT	./.
chr2	97377599	.	A	.	.	LowGQX	END=97377764	GT	./.
chr2	97378810	.	G	.	.	LowGQX	END=97378909	GT	./.
chr2	97399248	.	G	.	.	LowGQX	END=97399269	GT	./.
chr2	97399270	.	C	.	.	LowGQX	END=97399347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97400144	.	A	.	.	LowGQX	END=97400265	GT	./.
chr2	97402838	.	A	.	.	LowGQX	END=97402997	GT	./.
chr2	97403684	.	A	.	.	LowGQX	END=97403806	GT	./.
chr2	97405569	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97405570	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97405571	.	C	.	.	LowGQX	END=97405592;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97405593	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97405594	.	G	.	.	LowGQX	END=97405601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97405602	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97405603	.	T	.	.	LowGQX	END=97405607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97405608	.	A	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	97405609	.	G	.	.	LowGQX	END=97405779	GT	./.
chr2	97426686	.	G	.	.	LowGQX	END=97426754	GT	./.
chr2	97426755	.	G	.	.	LowGQX	END=97426787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97426788	.	C	.	.	LowGQX	END=97426789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	97426790	.	C	.	.	LowGQX	END=97426792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr2	97426793	.	C	.	.	PASS	END=97426807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	97426808	.	G	.	.	PASS	END=97426816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	97426817	.	G	.	.	PASS	END=97426823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr2	97426824	.	C	.	.	PASS	END=97426825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	97426826	.	G	.	.	PASS	END=97426844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr2	97426845	.	G	.	.	PASS	END=97426850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr2	97426851	.	G	.	.	PASS	END=97426853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:90:60
chr2	97426854	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:69:60
chr2	97426855	.	G	.	.	PASS	END=97426864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:78:60
chr2	97426865	.	G	.	.	PASS	END=97426896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	97426897	.	G	.	.	PASS	END=97426940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	97426941	.	T	.	.	PASS	END=97426964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	97426965	.	A	.	.	PASS	END=97427034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	97427035	.	A	.	.	PASS	END=97427086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr2	97427087	.	C	.	.	PASS	END=97427194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr2	97427195	.	G	.	.	PASS	END=97427234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr2	97427235	.	G	.	.	PASS	END=97427447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr2	97427448	.	A	.	.	PASS	END=97427573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:298:99:60
chr2	97427574	.	G	.	.	PASS	END=97427640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:293:99:60
chr2	97427641	.	C	.	.	PASS	END=97427747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:349:99:60
chr2	97427748	.	C	.	.	PASS	END=97427959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:278:99:60
chr2	97427960	.	C	.	.	PASS	END=97427992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr2	97427993	.	A	.	.	PASS	END=97428024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	97428025	.	T	.	.	PASS	END=97428055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	97428056	.	T	.	.	PASS	END=97428074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	97428075	.	C	.	.	PASS	END=97428106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	97428107	.	G	.	.	PASS	END=97428126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	97428127	.	A	.	.	PASS	END=97428130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:84:60
chr2	97428131	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:75:60
chr2	97428132	.	A	.	.	PASS	END=97428144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr2	97428145	.	C	.	.	PASS	END=97428146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:60:60
chr2	97428147	.	A	.	.	PASS	END=97428151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	97428152	.	T	.	.	PASS	END=97428154;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	97428155	.	T	.	.	PASS	END=97428156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:60
chr2	97428157	.	C	.	.	PASS	END=97428158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:57:60
chr2	97428159	.	C	.	.	PASS	END=97428163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	97428164	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:21:48:60
chr2	97428165	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:0:60
chr2	97428166	.	C	.	.	PASS	END=97428173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	97428174	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:35:60
chr2	97428175	.	C	.	.	PASS	END=97428189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	97462698	.	T	.	.	PASS	END=97462721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr2	97462722	.	T	.	.	PASS	END=97462742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr2	97462743	.	C	.	.	PASS	END=97462774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:267:99:60
chr2	97462775	.	A	.	.	PASS	END=97462895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:323:99:60
chr2	97462896	.	A	.	.	PASS	END=97462932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:60
chr2	97462933	.	C	.	.	PASS	END=97462943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr2	97463199	.	C	.	.	PASS	END=97463236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:60
chr2	97463237	.	C	.	.	PASS	END=97463275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	97463276	.	T	.	.	PASS	END=97463386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	97463387	.	A	.	.	PASS	END=97463432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:90:60
chr2	97463433	.	G	.	.	PASS	END=97463435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	97464743	.	T	.	.	PASS	END=97464749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr2	97464750	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:69:60
chr2	97464751	.	C	.	.	PASS	END=97464762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	97464763	.	C	.	.	PASS	END=97464783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	97464784	.	C	.	.	PASS	END=97464831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	97464832	.	A	.	.	PASS	END=97464924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	97464925	.	C	.	.	PASS	END=97464958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	97464959	.	T	.	.	PASS	END=97464985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	97464986	.	C	.	.	PASS	END=97465014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:81:60
chr2	97465238	.	C	.	.	PASS	END=97465266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	97465267	.	C	.	.	PASS	END=97465388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	97465389	.	A	.	.	PASS	END=97465417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	97465418	.	T	.	.	PASS	END=97465436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	97474247	.	G	.	.	PASS	END=97474252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr2	97474253	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:16:48:60
chr2	97474254	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:16:9:60
chr2	97474255	.	A	.	.	PASS	END=97474275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	97474276	.	A	.	.	PASS	END=97474278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr2	97474279	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:42:60
chr2	97474280	.	C	.	.	PASS	END=97474291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr2	97474292	.	C	.	.	PASS	END=97474310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:63:60
chr2	97474311	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:60:60
chr2	97474312	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:90:60
chr2	97474313	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:38:60
chr2	97474314	.	C	.	.	PASS	END=97474317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:84:60
chr2	97474318	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:75:60
chr2	97474319	.	C	.	.	PASS	END=97474321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:93:60
chr2	97474322	.	C	.	.	PASS	END=97474323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:75:60
chr2	97474324	.	C	.	.	PASS	END=97474343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:93:60
chr2	97474344	.	C	.	.	PASS	END=97474430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	97474431	.	C	.	.	PASS	END=97474463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:96:60
chr2	97474464	.	C	.	.	PASS	END=97474477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr2	97474478	.	A	.	.	PASS	END=97474487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr2	97474488	.	C	.	.	PASS	END=97474489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:51:60
chr2	97474490	.	C	.	.	PASS	END=97474496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr2	97474497	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:30:24:60
chr2	97474498	.	T	.	.	PASS	END=97474506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:51:60
chr2	97474507	.	A	.	.	PASS	END=97474514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	97474515	.	C	.	.	PASS	END=97474518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	97474519	.	T	.	.	LowGQX	END=97474530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:24:60
chr2	97474963	.	T	.	.	PASS	END=97474964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr2	97474965	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:39:60
chr2	97474966	.	C	.	.	PASS	END=97474990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:60
chr2	97474991	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:9:60
chr2	97474992	.	C	.	.	PASS	END=97474999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	97475000	.	G	.	.	PASS	END=97475012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:69:60
chr2	97475013	.	C	.	.	PASS	END=97475018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	97475019	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:42:60
chr2	97475020	.	G	.	.	PASS	END=97475025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr2	97475026	.	C	.	.	PASS	END=97475035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr2	97475036	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:69:60
chr2	97475037	.	C	.	.	PASS	END=97475039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr2	97475040	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:69:60
chr2	97475041	.	T	.	.	PASS	END=97475042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:93:60
chr2	97475043	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:57:60
chr2	97475044	.	C	.	.	PASS	END=97475047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr2	97475048	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:57:60
chr2	97475049	.	T	.	.	PASS	END=97475071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:60
chr2	97475072	.	T	.	.	PASS	END=97475119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	97475120	.	C	.	.	PASS	END=97475140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	97475141	.	C	.	.	PASS	END=97475254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	97475255	.	C	.	.	PASS	END=97475283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	97475284	.	T	.	.	PASS	END=97475293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	97475294	.	T	.	.	PASS	END=97475305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	97482002	.	G	.	.	LowGQX	END=97482974	GT	./.
chr2	97482975	.	C	.	.	LowGQX	END=97482979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97482980	.	A	.	.	LowGQX	END=97482981	GT	./.
chr2	97482982	.	A	.	.	LowGQX	END=97482984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97482985	.	G	.	.	LowGQX	.	GT	./.
chr2	97482986	.	C	.	.	LowGQX	END=97482992;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97482993	.	C	.	.	LowGQX	.	GT	./.
chr2	97482994	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97482995	.	G	.	.	LowGQX	.	GT	./.
chr2	97482996	.	G	.	.	LowGQX	END=97482998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97482999	.	G	.	.	LowGQX	END=97483000	GT	./.
chr2	97483001	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483002	.	A	.	.	LowGQX	.	GT	./.
chr2	97483003	.	G	.	.	LowGQX	END=97483005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483006	.	C	.	.	LowGQX	.	GT	./.
chr2	97483007	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483008	.	G	.	.	LowGQX	.	GT	./.
chr2	97483009	.	T	.	.	LowGQX	END=97483010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483011	.	C	.	.	LowGQX	.	GT	./.
chr2	97483012	.	T	.	.	LowGQX	END=97483016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483017	.	T	.	.	LowGQX	.	GT	./.
chr2	97483018	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483019	.	C	.	.	LowGQX	.	GT	./.
chr2	97483020	.	G	.	.	LowGQX	END=97483022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483023	.	G	.	.	LowGQX	END=97483024	GT	./.
chr2	97483025	.	C	.	.	LowGQX	END=97483027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483028	.	G	.	.	LowGQX	END=97483029	GT	./.
chr2	97483030	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483031	.	C	.	.	LowGQX	.	GT	./.
chr2	97483032	.	A	.	.	LowGQX	END=97483033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483034	.	C	.	.	LowGQX	END=97483036	GT	./.
chr2	97483037	.	C	.	.	LowGQX	END=97483039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483040	.	G	.	.	LowGQX	.	GT	./.
chr2	97483041	.	C	.	.	LowGQX	END=97483050;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483051	.	A	.	.	LowGQX	END=97483053	GT	./.
chr2	97483054	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483055	.	G	.	.	LowGQX	.	GT	./.
chr2	97483056	.	C	.	.	LowGQX	END=97483058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483059	.	A	.	.	LowGQX	.	GT	./.
chr2	97483060	.	T	.	.	LowGQX	END=97483063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483064	.	G	.	.	LowGQX	.	GT	./.
chr2	97483065	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483066	.	T	.	.	LowGQX	END=97483067	GT	./.
chr2	97483068	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483069	.	A	.	.	LowGQX	.	GT	./.
chr2	97483070	.	C	.	.	LowGQX	END=97483072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483073	.	G	.	.	LowGQX	.	GT	./.
chr2	97483074	.	G	.	.	LowGQX	END=97483076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483077	.	G	.	.	LowGQX	.	GT	./.
chr2	97483078	.	A	.	.	LowGQX	END=97483081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483082	.	C	.	.	LowGQX	.	GT	./.
chr2	97483083	.	T	.	.	LowGQX	END=97483085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483086	.	A	.	.	LowGQX	END=97483087	GT	./.
chr2	97483088	.	C	.	.	LowGQX	END=97483090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483091	.	C	.	.	LowGQX	END=97483092	GT	./.
chr2	97483093	.	T	.	.	LowGQX	END=97483095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483096	.	A	.	.	LowGQX	.	GT	./.
chr2	97483097	.	C	.	.	LowGQX	END=97483099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483100	.	G	.	.	LowGQX	.	GT	./.
chr2	97483101	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483102	.	T	.	.	LowGQX	END=97483103	GT	./.
chr2	97483104	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483105	.	A	.	.	LowGQX	END=97483107	GT	./.
chr2	97483108	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483109	.	C	.	.	LowGQX	.	GT	./.
chr2	97483110	.	A	.	.	LowGQX	END=97483111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483112	.	G	.	.	LowGQX	END=97483114	GT	./.
chr2	97483115	.	C	.	.	LowGQX	END=97483117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483118	.	G	.	.	LowGQX	.	GT	./.
chr2	97483119	.	G	.	.	LowGQX	END=97483120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483121	.	C	.	.	LowGQX	.	GT	./.
chr2	97483122	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97483123	.	T	.	.	LowGQX	END=97483127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483128	.	G	.	.	LowGQX	.	GT	./.
chr2	97483129	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483130	.	T	.	.	LowGQX	END=97483131	GT	./.
chr2	97483132	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483133	.	C	.	.	LowGQX	.	GT	./.
chr2	97483134	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483135	.	A	.	.	LowGQX	END=97483139	GT	./.
chr2	97483140	.	T	.	.	LowGQX	END=97483141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483142	.	C	.	.	LowGQX	END=97483143	GT	./.
chr2	97483144	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97483145	.	G	.	.	LowGQX	.	GT	./.
chr2	97483146	.	C	.	.	LowGQX	END=97483172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97483173	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97483174	.	A	.	.	LowGQX	END=97483209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97483210	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97483211	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr2	97483212	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97483213	.	A	.	.	LowGQX	END=97483222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97483223	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97483224	.	G	.	.	LowGQX	END=97483241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97490793	.	A	.	.	PASS	END=97490896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr2	97490897	.	A	.	.	PASS	END=97490927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	97490928	.	T	.	.	PASS	END=97490940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	97492568	.	A	.	.	LowGQX	END=97492687	GT	./.
chr2	97492688	.	G	.	.	LowGQX	END=97492721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97493466	.	A	.	.	LowGQX	END=97493503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97493504	.	A	.	.	LowGQX	END=97493639	GT	./.
chr2	97493834	.	A	.	.	LowGQX	END=97493865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97493866	.	G	.	.	LowGQX	END=97493934	GT	./.
chr2	97494302	.	A	.	.	LowGQX	END=97494365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97494366	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	97494367	.	A	.	.	LowGQX	END=97494371;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97494372	.	A	.	2.30	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:2:0:60:0
chr2	97494373	.	C	.	.	LowGQX	END=97494439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97494731	.	A	.	.	LowGQX	END=97494873	GT	./.
chr2	97498272	.	T	.	.	LowGQX	END=97498371	GT	./.
chr2	97498633	.	G	.	.	LowGQX	END=97498746	GT	./.
chr2	97505233	.	C	.	.	LowGQX	END=97505383	GT	./.
chr2	97505462	.	A	.	.	LowGQX	END=97505564	GT	./.
chr2	97505674	.	T	.	.	LowGQX	END=97505834	GT	./.
chr2	97505967	.	A	.	.	LowGQX	END=97505969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97505970	.	T	.	.	LowGQX	.	GT	./.
chr2	97505971	.	T	.	.	LowGQX	END=97505981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97505982	.	T	.	.	LowGQX	.	GT	./.
chr2	97505983	.	T	.	.	LowGQX	END=97505989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97505990	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97505991	.	G	.	.	LowGQX	END=97506051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97506052	.	C	.	.	LowGQX	END=97506069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	97506151	.	A	.	.	LowGQX	END=97506165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	97506166	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	97506167	.	C	.	.	LowGQX	END=97506208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97506209	.	T	.	.	LowGQX	.	GT	./.
chr2	97506210	.	G	.	.	LowGQX	END=97506231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97506232	.	T	.	.	LowGQX	.	GT	./.
chr2	97506233	.	G	.	.	LowGQX	END=97506241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97506242	.	T	.	.	LowGQX	.	GT	./.
chr2	97506243	.	G	.	.	LowGQX	END=97506246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97506247	.	T	.	.	LowGQX	.	GT	./.
chr2	97506248	.	G	.	.	LowGQX	END=97506252;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97506253	.	T	.	.	LowGQX	.	GT	./.
chr2	97506522	.	A	.	.	LowGQX	END=97506651	GT	./.
chr2	97507795	.	A	.	.	LowGQX	END=97507796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97507797	.	C	.	.	LowGQX	.	GT	./.
chr2	97507798	.	T	.	.	LowGQX	END=97507827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97507828	.	A	.	.	LowGQX	END=97507829	GT	./.
chr2	97507830	.	T	.	.	LowGQX	END=97507845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97507846	.	T	.	.	LowGQX	.	GT	./.
chr2	97507847	.	T	.	.	LowGQX	END=97507860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97507861	.	A	.	.	LowGQX	.	GT	./.
chr2	97507862	.	C	.	.	LowGQX	END=97507874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97507875	.	G	.	.	LowGQX	.	GT	./.
chr2	97507876	.	T	.	.	LowGQX	END=97507894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97507895	.	T	.	.	LowGQX	.	GT	./.
chr2	97507896	.	A	.	.	LowGQX	END=97507912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97507913	.	A	.	.	LowGQX	.	GT	./.
chr2	97507914	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97507915	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97507916	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97507917	.	T	.	.	LowGQX	END=97507920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97507921	.	A	.	.	LowGQX	.	GT	./.
chr2	97507922	.	G	.	.	LowGQX	END=97507924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97508100	.	A	.	.	LowGQX	END=97508250	GT	./.
chr2	97509667	.	C	.	.	LowGQX	END=97509766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97514036	.	G	.	.	LowGQX	END=97514123	GT	./.
chr2	97514124	.	G	.	.	LowGQX	END=97514183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97519136	.	A	.	.	LowGQX	END=97519151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97519152	.	T	.	.	LowGQX	.	GT	./.
chr2	97519153	.	C	.	.	LowGQX	END=97519176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97519177	.	G	.	.	LowGQX	.	GT	./.
chr2	97519178	.	G	.	.	LowGQX	END=97519213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97519214	.	T	.	.	LowGQX	.	GT	./.
chr2	97519215	.	C	.	.	LowGQX	END=97519219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97519220	.	T	.	.	LowGQX	END=97519343	GT	./.
chr2	97520073	.	A	.	.	LowGQX	END=97520180	GT	./.
chr2	97523573	.	C	.	.	LowGQX	END=97523726	GT	./.
chr2	97526361	.	C	.	.	PASS	END=97526430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:60
chr2	97526431	.	C	.	.	PASS	END=97526536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:280:99:60
chr2	97526537	.	A	.	.	PASS	END=97526630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:268:99:60
chr2	97526631	.	A	.	.	PASS	END=97526756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:280:99:60
chr2	97526757	.	C	.	.	PASS	END=97526804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr2	97526805	.	C	.	.	PASS	END=97527137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr2	97527138	.	G	C	2872.49	PASS	BaseQRankSum=2.250;DP=209;Dels=0.00;FS=1.139;HRun=0;HaplotypeScore=19.0331;MQ=60;MQ0=0;MQRankSum=-1.124;QD=13.74;ReadPosRankSum=0.906;SB=-1407.53	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:95,114:209:99:2902,0,2464:60:99:0.545
chr2	97527139	.	G	.	.	PASS	END=97527183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	97527184	.	T	.	.	PASS	END=97527292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	97527293	.	G	.	.	PASS	END=97527388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	97527472	.	A	.	.	PASS	END=97527522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr2	97527523	.	C	.	.	PASS	END=97527613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:246:99:60
chr2	97527614	.	G	.	.	PASS	END=97527633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr2	97529417	.	A	.	.	PASS	END=97529529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	97529530	.	T	.	.	PASS	END=97529533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	97529661	.	A	.	.	PASS	END=97529682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:87:60
chr2	97529683	.	G	.	.	PASS	END=97529740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	97529741	.	T	.	.	PASS	END=97529833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	97529834	.	G	.	.	PASS	END=97529872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:90:60
chr2	97529873	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:74:60
chr2	97529874	.	G	.	.	PASS	END=97529887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr2	97529973	.	A	.	.	PASS	END=97530001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	97530002	.	G	.	.	PASS	END=97530037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	97530038	.	G	.	.	PASS	END=97530096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	97530097	.	T	.	.	PASS	END=97530121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	97530440	.	A	.	.	PASS	END=97530468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	97530469	.	G	.	.	PASS	END=97530537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	97530538	.	T	.	.	PASS	END=97530603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	97530604	.	C	.	.	PASS	END=97530619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	97530699	.	A	.	.	PASS	END=97530812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	97530813	.	A	.	.	PASS	END=97530825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	97530826	.	C	.	.	PASS	END=97530854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	97530939	.	A	.	.	PASS	END=97531047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr2	97531048	.	A	.	.	PASS	END=97531059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	97531176	.	A	.	.	PASS	END=97531258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	97531259	.	T	.	.	PASS	END=97531276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	97531401	.	A	.	.	PASS	END=97531447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	97531448	.	C	.	.	PASS	END=97531503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	97531586	.	C	.	.	PASS	END=97531675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	97531676	.	G	.	.	PASS	END=97531685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	97532018	.	A	.	.	PASS	END=97532078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:245:99:60
chr2	97532079	.	C	.	.	PASS	END=97532159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:268:99:60
chr2	97532160	.	T	.	.	PASS	END=97532176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr2	97532177	.	G	.	.	PASS	END=97532227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	97532228	.	C	.	.	PASS	END=97532238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	97532239	.	A	.	.	PASS	END=97532255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	97532256	.	C	.	.	PASS	END=97532281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	97532282	.	C	.	.	PASS	END=97532321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	97532322	.	C	.	.	PASS	END=97532351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr2	97532352	.	T	.	.	PASS	END=97532354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:81:60
chr2	97532355	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:56:60
chr2	97532356	.	C	.	.	PASS	END=97532367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:72:60
chr2	97532368	.	G	.	.	PASS	END=97532377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr2	97532378	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:15:60
chr2	97532379	.	A	.	.	PASS	END=97532398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:42:60
chr2	97532399	.	G	.	.	PASS	END=97532407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	97532408	.	A	.	.	PASS	END=97532409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:33:60
chr2	97532410	.	C	.	.	PASS	END=97532426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:42:60
chr2	97532427	.	A	.	.	PASS	END=97532428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:36:60
chr2	97532429	.	G	.	.	PASS	END=97532436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:60
chr2	97533453	.	C	.	.	PASS	END=97533480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	97533481	.	C	.	.	PASS	END=97533537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	97533538	.	G	.	.	PASS	END=97533577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	97533578	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:73:60
chr2	97533579	.	C	.	.	PASS	END=97533603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr2	97533604	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:99:60
chr2	97533605	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:51:60
chr2	97533606	.	A	.	.	PASS	END=97533615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:60
chr2	97533616	.	G	.	.	PASS	END=97533620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:66:60
chr2	97533621	.	C	.	.	PASS	END=97533630;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	97533631	.	G	.	.	PASS	END=97533638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	97533639	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:27:60
chr2	97533640	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:12:30:60
chr2	97533641	.	T	.	.	LowGQX	END=97533645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	97533646	.	T	.	.	LowGQX	END=97533649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr2	97533650	.	G	.	.	LowGQX	END=97533656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	97533657	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr2	97533658	.	G	.	.	LowGQX	END=97533664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	97533665	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr2	97533666	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	97533667	.	A	.	.	LowGQX	END=97533671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	97541980	.	C	.	.	LowGQX	END=97542079	GT	./.
chr2	97543625	.	A	.	.	LowGQX	.	GT	./.
chr2	97543626	.	C	.	.	LowGQX	END=97543627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97543628	.	T	.	.	LowGQX	.	GT	./.
chr2	97543629	.	G	.	.	LowGQX	END=97543633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97543634	.	T	.	.	LowGQX	END=97543781	GT	./.
chr2	97544142	.	G	.	.	LowGQX	END=97544241	GT	./.
chr2	97559661	.	A	.	.	LowGQX	END=97559756	GT	./.
chr2	97559757	.	A	.	.	LowGQX	END=97559770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97559771	.	C	.	.	LowGQX	.	GT	./.
chr2	97559772	.	C	.	.	LowGQX	END=97559775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97559776	.	T	.	.	LowGQX	END=97559777	GT	./.
chr2	97559778	.	A	.	.	LowGQX	END=97559784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97559785	.	A	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	97559786	.	C	.	.	LowGQX	END=97559789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97559790	.	T	.	.	LowGQX	.	GT	./.
chr2	97559791	.	G	.	.	LowGQX	END=97559810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97559811	.	T	.	.	LowGQX	.	GT	./.
chr2	97559812	.	C	.	.	LowGQX	END=97559824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97559825	.	T	.	.	LowGQX	.	GT	./.
chr2	97559826	.	G	.	.	LowGQX	END=97559830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97560761	.	A	.	.	LowGQX	END=97560860	GT	./.
chr2	97568351	.	A	.	.	LowGQX	END=97568450	GT	./.
chr2	97586901	.	C	.	.	LowGQX	END=97587000	GT	./.
chr2	97587214	.	C	.	.	LowGQX	END=97587391	GT	./.
chr2	97589224	.	C	.	.	LowGQX	END=97589316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97589317	.	C	.	.	LowGQX	END=97589323	GT	./.
chr2	97594890	.	T	.	.	LowGQX	END=97594956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97594957	.	A	.	.	LowGQX	.	GT	./.
chr2	97594958	.	A	.	.	LowGQX	END=97594967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97594968	.	G	.	.	LowGQX	.	GT	./.
chr2	97594969	.	A	.	.	LowGQX	END=97594972;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97594973	.	T	.	.	LowGQX	.	GT	./.
chr2	97594974	.	A	.	.	LowGQX	END=97594982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97594983	.	G	.	.	LowGQX	.	GT	./.
chr2	97594984	.	A	.	.	LowGQX	END=97594999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97595000	.	C	.	.	LowGQX	.	GT	./.
chr2	97595001	.	T	.	.	LowGQX	END=97595008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97595009	.	G	.	.	LowGQX	.	GT	./.
chr2	97595010	.	C	.	.	LowGQX	END=97595012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97595013	.	C	.	.	LowGQX	.	GT	./.
chr2	97595014	.	C	.	.	LowGQX	END=97595017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97595018	.	A	.	.	LowGQX	.	GT	./.
chr2	97595019	.	C	.	.	LowGQX	END=97595021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97595022	.	C	.	.	LowGQX	.	GT	./.
chr2	97595023	.	T	.	.	LowGQX	END=97595024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97595025	.	G	.	.	LowGQX	.	GT	./.
chr2	97595026	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97595027	.	A	.	.	LowGQX	.	GT	./.
chr2	97595028	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97595029	.	T	.	.	LowGQX	END=97595101	GT	./.
chr2	97613547	.	G	.	.	LowGQX	END=97613646	GT	./.
chr2	97617115	.	C	.	.	LowGQX	END=97617134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97617135	.	A	.	.	LowGQX	END=97617169	GT	./.
chr2	97617170	.	G	.	.	LowGQX	END=97617221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97625994	.	C	.	.	LowGQX	END=97626150	GT	./.
chr2	97626151	.	G	.	.	LowGQX	END=97626177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97633256	.	C	.	.	LowGQX	END=97633318	GT	./.
chr2	97633319	.	C	.	.	LowGQX	END=97633335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97633336	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	97633337	.	C	.	.	LowGQX	END=97633355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97633356	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	97633357	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	97633358	.	C	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	97633359	.	T	.	.	LowGQX	END=97633364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	97636434	.	G	.	.	LowGQX	END=97636533	GT	./.
chr2	97637637	.	C	.	.	LowGQX	END=97637649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97637650	.	A	.	.	LowGQX	.	GT	./.
chr2	97637651	.	G	.	.	LowGQX	END=97637671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97637672	.	G	.	.	LowGQX	.	GT	./.
chr2	97637673	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97637674	.	G	.	.	LowGQX	.	GT	./.
chr2	97637675	.	T	.	.	LowGQX	END=97637680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97637681	.	A	.	.	LowGQX	END=97637682	GT	./.
chr2	97637683	.	C	.	.	LowGQX	END=97637710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97637711	.	T	.	.	LowGQX	.	GT	./.
chr2	97637712	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97637713	.	C	.	.	LowGQX	END=97637869	GT	./.
chr2	97637870	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97637871	.	T	.	.	LowGQX	.	GT	./.
chr2	97637872	.	C	.	.	LowGQX	END=97637879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97637880	.	T	.	.	LowGQX	.	GT	./.
chr2	97637881	.	G	.	.	LowGQX	END=97637882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97637883	.	G	.	.	LowGQX	.	GT	./.
chr2	97637884	.	A	.	.	LowGQX	END=97637904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97637905	.	T	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	97637906	.	A	.	.	LowGQX	END=97637923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97637924	.	G	.	.	LowGQX	.	GT	./.
chr2	97637925	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97637926	.	T	.	.	LowGQX	.	GT	./.
chr2	97637927	.	G	.	.	LowGQX	END=97637986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97637987	.	T	.	.	LowGQX	.	GT	./.
chr2	97637988	.	C	.	.	LowGQX	END=97638013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97638014	.	T	.	.	LowGQX	.	GT	./.
chr2	97638015	.	C	.	.	LowGQX	END=97638019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97638020	.	T	.	.	LowGQX	END=97638059	GT	./.
chr2	97638259	.	G	.	.	LowGQX	END=97638358	GT	./.
chr2	97643553	.	C	.	.	LowGQX	END=97643669	GT	./.
chr2	97651946	.	C	.	.	LowGQX	END=97652123	GT	./.
chr2	97653993	.	G	.	.	LowGQX	END=97654092	GT	./.
chr2	97674733	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674734	.	C	.	.	LowGQX	.	GT	./.
chr2	97674735	.	T	.	.	LowGQX	END=97674738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674739	.	A	.	.	LowGQX	.	GT	./.
chr2	97674740	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674741	.	G	.	.	LowGQX	END=97674742	GT	./.
chr2	97674743	.	A	.	.	LowGQX	END=97674744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674745	.	C	.	.	LowGQX	END=97674746	GT	./.
chr2	97674747	.	G	.	.	LowGQX	END=97674751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674752	.	C	.	.	LowGQX	.	GT	./.
chr2	97674753	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674754	.	A	.	.	LowGQX	.	GT	./.
chr2	97674755	.	T	.	.	LowGQX	END=97674756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674757	.	A	.	.	LowGQX	END=97674759	GT	./.
chr2	97674760	.	T	.	.	LowGQX	END=97674766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674767	.	T	.	.	LowGQX	.	GT	./.
chr2	97674768	.	G	.	.	LowGQX	END=97674769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674770	.	G	.	.	LowGQX	.	GT	./.
chr2	97674771	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674772	.	A	.	.	LowGQX	.	GT	./.
chr2	97674773	.	T	.	.	LowGQX	END=97674778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674779	.	C	.	.	LowGQX	END=97674780	GT	./.
chr2	97674781	.	C	.	.	LowGQX	END=97674784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674785	.	A	.	.	LowGQX	.	GT	./.
chr2	97674786	.	T	.	.	LowGQX	END=97674791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674792	.	T	.	.	LowGQX	.	GT	./.
chr2	97674793	.	G	.	.	LowGQX	END=97674795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674796	.	G	.	.	LowGQX	.	GT	./.
chr2	97674797	.	A	.	.	LowGQX	END=97674798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674799	.	G	.	.	LowGQX	.	GT	./.
chr2	97674800	.	T	.	.	LowGQX	END=97674802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674803	.	G	.	.	LowGQX	.	GT	./.
chr2	97674804	.	T	.	.	LowGQX	END=97674805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674806	.	G	.	.	LowGQX	END=97674807	GT	./.
chr2	97674808	.	A	.	.	LowGQX	END=97674809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674810	.	A	.	.	LowGQX	END=97674811	GT	./.
chr2	97674812	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674813	.	A	.	.	LowGQX	.	GT	./.
chr2	97674814	.	A	.	.	LowGQX	END=97674830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674831	.	G	.	.	LowGQX	END=97674832	GT	./.
chr2	97674833	.	T	.	.	LowGQX	END=97674848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97674849	.	C	.	.	LowGQX	END=97674921	GT	./.
chr2	97684030	.	A	.	.	LowGQX	END=97684183	GT	./.
chr2	97749474	.	G	.	.	LowGQX	END=97749573	GT	./.
chr2	97749679	.	A	.	.	LowGQX	END=97749778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	97749904	.	A	.	.	LowGQX	END=97750016	GT	./.
chr2	97751434	.	A	.	.	LowGQX	END=97751600	GT	./.
chr2	97751856	.	G	.	.	LowGQX	END=97751955	GT	./.
chr2	97755799	.	C	.	.	LowGQX	END=97755813	GT	./.
chr2	97755814	.	G	.	.	LowGQX	END=97755821;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97755822	.	G	.	.	LowGQX	.	GT	./.
chr2	97755823	.	G	.	.	LowGQX	END=97755833;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97755834	.	G	.	.	LowGQX	.	GT	./.
chr2	97755835	.	G	.	.	LowGQX	END=97755837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97755838	.	G	.	.	LowGQX	END=97755840	GT	./.
chr2	97755841	.	C	.	.	LowGQX	END=97755843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97755844	.	A	.	.	LowGQX	END=97755846	GT	./.
chr2	97755847	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97755848	.	G	.	.	LowGQX	.	GT	./.
chr2	97755849	.	G	.	.	LowGQX	END=97755852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97755853	.	T	.	.	LowGQX	.	GT	./.
chr2	97755854	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr2	97755855	.	T	.	.	LowGQX;LowMQ	END=97755856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:16
chr2	97755857	.	G	.	.	LowGQX;LowMQ	END=97755858	GT	./.
chr2	97755859	.	G	.	.	LowGQX;LowMQ	END=97755861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:16
chr2	97755862	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	97755863	.	G	.	.	LowGQX;LowMQ	END=97755864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:16
chr2	97755865	.	A	.	.	LowGQX;LowMQ	END=97755867	GT	./.
chr2	97755868	.	A	.	.	LowGQX;LowMQ	END=97755871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:16
chr2	97755872	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	97755873	.	A	.	.	LowGQX;LowMQ	END=97755879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:16
chr2	97755880	.	G	.	.	LowGQX;LowMQ	END=97755881	GT	./.
chr2	97755882	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:3:3:16
chr2	97755883	.	C	.	.	LowGQX;LowMQ	END=97755886	GT	./.
chr2	97755887	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:3:3:16
chr2	97755888	.	G	.	.	LowGQX;LowMQ	END=97755889	GT	./.
chr2	97755890	.	T	.	.	LowGQX;LowMQ	END=97755893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:16
chr2	97755894	.	G	.	.	LowGQX;LowMQ	END=97755899	GT	./.
chr2	97755900	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:3:3:16
chr2	97755901	.	A	.	.	LowGQX;LowMQ	END=97755903	GT	./.
chr2	97755904	.	T	.	.	LowGQX;LowMQ	END=97755905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:16
chr2	97755906	.	G	.	.	LowGQX;LowMQ	END=97755907	GT	./.
chr2	97755908	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:3:3:16
chr2	97755909	.	G	.	.	LowGQX;LowMQ	END=97755910	GT	./.
chr2	97755911	.	A	.	.	LowGQX;LowMQ	END=97755912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:16
chr2	97755913	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	97755914	.	T	.	.	LowGQX;LowMQ	END=97755916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:16
chr2	97755917	.	T	.	.	LowGQX;LowMQ	END=97755918	GT	./.
chr2	97755919	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:3:3:16
chr2	97755920	.	G	.	.	LowGQX;LowMQ	END=97755921	GT	./.
chr2	97755922	.	T	.	.	LowGQX;LowMQ	END=97755923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:16
chr2	97755924	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	97755925	.	T	.	.	LowGQX;LowMQ	END=97755926;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:19
chr2	97755927	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr2	97755928	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:4:3:19
chr2	97755929	.	G	.	.	LowGQX;LowMQ	END=97755931	GT	./.
chr2	97755932	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:27
chr2	97755933	.	G	.	33	LowGQX	DP=2;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:27:3
chr2	97755934	.	G	.	.	LowGQX	END=97755937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:27
chr2	97755938	.	C	.	.	LowGQX	.	GT	./.
chr2	97755939	.	G	.	.	LowGQX	END=97755950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:27
chr2	97755951	.	G	.	.	LowGQX	.	GT	./.
chr2	97755952	.	C	.	.	LowGQX	END=97755954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:27
chr2	97755955	.	T	.	.	LowGQX	.	GT	./.
chr2	97755956	.	G	.	.	LowGQX	END=97755959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:27
chr2	97755960	.	C	.	.	LowGQX	.	GT	./.
chr2	97755961	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:27
chr2	97755962	.	C	.	33	LowGQX	DP=2;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:27:3
chr2	97755963	.	A	.	.	LowGQX	END=97755965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97755966	.	A	.	.	LowGQX	.	GT	./.
chr2	97755967	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97755968	.	T	.	.	LowGQX	.	GT	./.
chr2	97755969	.	C	.	.	LowGQX	END=97755971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97755972	.	G	.	.	LowGQX	END=97755973	GT	./.
chr2	97755974	.	C	.	.	LowGQX	END=97755978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97755979	.	C	.	.	LowGQX	END=97755980	GT	./.
chr2	97755981	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97755982	.	A	.	.	LowGQX	.	GT	./.
chr2	97755983	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97755984	.	C	.	.	LowGQX	END=97755988	GT	./.
chr2	97755989	.	T	.	.	LowGQX	END=97755993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97755994	.	G	.	.	LowGQX	.	GT	./.
chr2	97755995	.	G	.	.	LowGQX	END=97755996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97755997	.	C	.	.	LowGQX	.	GT	./.
chr2	97755998	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97755999	.	T	.	.	LowGQX	.	GT	./.
chr2	97756000	.	G	.	.	LowGQX	END=97756001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97756002	.	G	.	.	LowGQX	.	GT	./.
chr2	97756003	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97756004	.	C	.	.	LowGQX	.	GT	./.
chr2	97756005	.	T	.	.	LowGQX	END=97756006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97756007	.	G	.	.	LowGQX	.	GT	./.
chr2	97756008	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97756009	.	G	.	.	LowGQX	.	GT	./.
chr2	97756010	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97756011	.	C	.	.	LowGQX	.	GT	./.
chr2	97756012	.	A	.	.	LowGQX	END=97756016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97756017	.	G	.	.	LowGQX	.	GT	./.
chr2	97756018	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97756019	.	T	.	.	LowGQX	.	GT	./.
chr2	97756020	.	T	.	.	LowGQX	END=97756021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97756022	.	C	.	.	LowGQX	END=97756023	GT	./.
chr2	97756024	.	T	.	.	LowGQX	END=97756025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97756026	.	C	.	.	LowGQX	.	GT	./.
chr2	97756027	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97756028	.	A	.	.	LowGQX	END=97756031	GT	./.
chr2	97756032	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97756033	.	G	.	.	LowGQX	END=97756035	GT	./.
chr2	97756036	.	A	.	.	LowGQX	END=97756039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97756040	.	C	.	.	LowGQX	.	GT	./.
chr2	97756041	.	T	.	.	LowGQX	END=97756043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97756044	.	C	.	.	LowGQX	END=97756045	GT	./.
chr2	97756046	.	A	.	.	LowGQX	END=97756049;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97756050	.	G	.	.	LowGQX	END=97756051	GT	./.
chr2	97756052	.	C	.	.	LowGQX	END=97756056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97756057	.	A	.	.	LowGQX	.	GT	./.
chr2	97756058	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97756059	.	G	.	.	LowGQX	.	GT	./.
chr2	97756060	.	G	.	.	LowGQX	END=97756064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97757197	.	A	.	.	LowGQX	END=97757231	GT	./.
chr2	97757232	.	T	.	.	LowGQX	END=97757288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97757289	.	A	.	.	LowGQX	.	GT	./.
chr2	97757290	.	C	.	.	LowGQX	END=97757323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97757324	.	A	.	33	LowGQX	DP=2;MQ=54;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:54:3
chr2	97757325	.	G	.	.	LowGQX	END=97757361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:54
chr2	97757362	.	T	.	.	LowGQX	.	GT	./.
chr2	97757363	.	C	.	.	LowGQX	END=97757443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:54
chr2	97757444	.	C	.	.	LowGQX	END=97757445	GT	./.
chr2	97779465	.	C	.	.	LowGQX	END=97779509	GT	./.
chr2	97779510	.	C	.	.	LowGQX	END=97779671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97779672	.	A	.	.	LowGQX	.	GT	./.
chr2	97779673	.	G	.	.	LowGQX	END=97779675;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97783799	.	A	.	.	LowGQX	END=97783877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:52
chr2	97783878	.	A	.	.	LowGQX	END=97783917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:51
chr2	97784079	.	A	.	.	LowGQX	END=97784262	GT	./.
chr2	97788573	.	G	.	.	LowGQX	END=97788730	GT	./.
chr2	97790196	.	G	.	.	LowGQX	END=97790375	GT	./.
chr2	97792733	.	A	.	.	LowGQX	END=97792887	GT	./.
chr2	97808341	.	A	.	.	LowGQX	END=97808356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	97808357	.	G	.	.	LowGQX	.	GT	./.
chr2	97808358	.	T	.	.	LowGQX	END=97808375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	97808376	.	G	.	.	LowGQX	.	GT	./.
chr2	97808377	.	T	.	.	LowGQX	END=97808378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	97808379	.	T	.	.	LowGQX	.	GT	./.
chr2	97808380	.	C	.	.	LowGQX	END=97808394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	97808395	.	C	.	.	LowGQX	.	GT	./.
chr2	97808396	.	A	.	.	LowGQX	END=97808399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	97808400	.	T	.	.	LowGQX	.	GT	./.
chr2	97808401	.	T	.	.	LowGQX	END=97808418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	97808419	.	C	.	.	LowGQX	.	GT	./.
chr2	97808420	.	A	.	.	LowGQX	END=97808436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	97808437	.	T	.	.	LowGQX	END=97808499	GT	./.
chr2	97808500	.	G	.	.	LowGQX	END=97808502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97808503	.	A	.	.	LowGQX	.	GT	./.
chr2	97808504	.	C	.	.	LowGQX	END=97808517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97808518	.	G	.	.	LowGQX	.	GT	./.
chr2	97808519	.	A	.	.	LowGQX	END=97808536;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97808537	.	C	.	.	LowGQX	END=97808538	GT	./.
chr2	97808539	.	A	.	.	LowGQX	END=97808547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97808548	.	A	.	.	LowGQX	.	GT	./.
chr2	97808549	.	A	.	.	LowGQX	END=97808560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97808561	.	A	.	.	LowGQX	.	GT	./.
chr2	97808562	.	A	.	.	LowGQX	END=97808567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97808568	.	G	.	.	LowGQX	END=97808569	GT	./.
chr2	97808570	.	C	.	.	LowGQX	END=97808581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97808582	.	A	.	.	LowGQX	.	GT	./.
chr2	97808583	.	A	.	.	LowGQX	END=97808585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97810219	.	A	.	.	LowGQX	END=97810318	GT	./.
chr2	97810363	.	G	.	.	LowGQX	END=97810462	GT	./.
chr2	97812188	.	T	.	.	LowGQX	END=97812287	GT	./.
chr2	97814955	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:60
chr2	97814956	.	G	A	52.84	LowGQ;LowGQX	DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=17.61;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,3:3:6.02:84,6,0:60:6:1.000
chr2	97814957	.	T	.	.	LowGQX	END=97815045;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	97815046	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	97815047	.	T	.	.	LowGQX	END=97815051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97815052	.	C	.	.	LowGQX	END=97815114	GT	./.
chr2	97817545	.	A	.	.	LowGQX	END=97817695	GT	./.
chr2	97818206	.	T	.	.	LowGQX	END=97818235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:49
chr2	97818236	.	A	.	33.01	LowGQX	DP=3;MQ=50;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:50:3
chr2	97818237	.	A	.	.	LowGQX	END=97818241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:50
chr2	97818242	.	G	.	.	LowGQX	.	GT	./.
chr2	97818243	.	C	.	.	LowGQX	END=97818260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:50
chr2	97818261	.	G	T	4.99	LowGQ;LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=50;MQ0=0;MQRankSum=-0.736;QD=1.66;ReadPosRankSum=-0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:19.67:33,0,20:50:5:0.333
chr2	97818262	.	C	G	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=50;MQ0=0;MQRankSum=-0.736;QD=1.66;ReadPosRankSum=-0.736;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.30:33,0,33:50:5:0.333
chr2	97818263	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:50
chr2	97818264	.	G	T	4.97	LowGQX;LowQD;SB	BaseQRankSum=0.736;DP=3;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=50;MQ0=0;MQRankSum=-0.736;QD=1.66;ReadPosRankSum=-0.736;SB=-0.00	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,1:3:33.29:33,0,39:50:5:0.333
chr2	97818265	.	T	.	.	LowGQX	END=97818280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:50
chr2	97818281	.	C	.	33	LowGQX	DP=3;MQ=50;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:50:3
chr2	97818282	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:6:50
chr2	97818283	.	G	.	33	LowGQX	DP=3;MQ=50;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:50:3
chr2	97818284	.	A	.	.	LowGQX	END=97818305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:50
chr2	97820395	.	A	.	.	LowGQX	END=97820494	GT	./.
chr2	97823773	.	T	.	.	LowGQX	END=97823923	GT	./.
chr2	97824309	.	T	.	.	LowGQX	END=97824408	GT	./.
chr2	97827806	.	T	.	.	LowGQX	END=97827905	GT	./.
chr2	97828980	.	G	.	.	LowGQX	END=97828981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr2	97828982	.	C	.	3.73	LowGQX	DP=1;MQ=24;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:24:0
chr2	97828983	.	A	.	.	LowGQX	END=97829003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr2	97829004	.	A	.	.	LowGQX	END=97829011	GT	./.
chr2	97829012	.	A	.	.	LowGQX	END=97829022;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr2	97829023	.	T	.	3.73	LowGQX	DP=1;MQ=24;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:24:0
chr2	97829024	.	T	.	.	LowGQX	END=97829028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr2	97829029	.	G	.	3.73	LowGQX	DP=1;MQ=24;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:24:0
chr2	97829030	.	T	.	3.73	LowGQX	DP=1;MQ=24;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:24:0
chr2	97829031	.	T	.	.	LowGQX	END=97829042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr2	97829043	.	G	.	.	LowGQX	.	GT	./.
chr2	97829044	.	T	.	.	LowGQX	END=97829085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:24
chr2	97829984	.	A	.	.	LowGQX;LowMQ	END=97830083	GT	./.
chr2	97830120	.	T	.	.	LowGQX	END=97830219	GT	./.
chr2	97833278	.	A	.	.	LowGQX	END=97833316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:42
chr2	97833317	.	C	.	36	LowGQX	DP=3;MQ=42;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:42:6
chr2	97833318	.	T	.	.	LowGQX	END=97833335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:42
chr2	97833336	.	A	.	.	LowGQX	END=97833339;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	97833340	.	A	.	.	LowGQX	END=97833377	GT	./.
chr2	97833418	.	T	.	.	LowGQX	END=97833429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	97833430	.	A	.	.	LowGQX	.	GT	./.
chr2	97833431	.	G	.	.	LowGQX	END=97833437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	97833438	.	C	.	.	LowGQX	.	GT	./.
chr2	97833439	.	T	.	.	LowGQX	END=97833446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	97833447	.	G	.	.	LowGQX	.	GT	./.
chr2	97833448	.	C	.	.	LowGQX	END=97833449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	97833450	.	G	.	.	LowGQX	.	GT	./.
chr2	97833451	.	A	.	.	LowGQX	END=97833452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	97833453	.	C	.	.	LowGQX	.	GT	./.
chr2	97833454	.	C	.	.	LowGQX	END=97833464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	97833465	.	G	.	.	LowGQX	.	GT	./.
chr2	97833466	.	C	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=40;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:40:3:1.000
chr2	97833467	.	A	.	.	LowGQX	END=97833472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	97833473	.	G	.	.	LowGQX	.	GT	./.
chr2	97833474	.	A	.	.	LowGQX	END=97833475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	97833476	.	A	.	.	LowGQX	END=97833477	GT	./.
chr2	97833478	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr2	97833479	.	G	.	.	LowGQX	.	GT	./.
chr2	97833480	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr2	97833481	.	A	.	.	LowGQX	.	GT	./.
chr2	97833482	.	G	.	.	LowGQX	END=97833484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	97833485	.	T	.	.	LowGQX	.	GT	./.
chr2	97833486	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr2	97833487	.	C	.	.	LowGQX	.	GT	./.
chr2	97833488	.	A	.	.	LowGQX	END=97833493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	97833494	.	T	.	.	LowGQX	.	GT	./.
chr2	97833495	.	C	.	.	LowGQX	END=97833496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	97833497	.	A	.	.	LowGQX	.	GT	./.
chr2	97833498	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr2	97833499	.	G	.	.	LowGQX	.	GT	./.
chr2	97833500	.	A	.	.	LowGQX	END=97833503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	97833504	.	G	.	.	LowGQX	END=97833506	GT	./.
chr2	97833507	.	A	.	.	LowGQX	END=97833511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	97833512	.	T	.	.	LowGQX	.	GT	./.
chr2	97833513	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr2	97833514	.	C	.	.	LowGQX	.	GT	./.
chr2	97833515	.	C	.	.	LowGQX	END=97833517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	97845439	.	A	.	.	LowGQX	END=97845474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	97845475	.	T	.	.	LowGQX	.	GT	./.
chr2	97845476	.	G	.	.	LowGQX	END=97845496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	97845497	.	T	.	.	LowGQX	END=97845538	GT	./.
chr2	97845584	.	C	.	.	LowGQX	END=97845683	GT	./.
chr2	97847299	.	A	.	.	LowGQX	END=97847400	GT	./.
chr2	97847401	.	G	.	.	LowGQX	END=97847434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	97847435	.	A	.	.	LowGQX	.	GT	./.
chr2	97847436	.	T	.	.	LowGQX	END=97847493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	97847494	.	G	.	.	LowGQX	.	GT	./.
chr2	97847495	.	C	.	.	LowGQX	END=97847501;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	97847502	.	A	.	.	LowGQX	.	GT	./.
chr2	97847503	.	A	.	.	LowGQX	END=97847535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	97847536	.	T	.	.	LowGQX	.	GT	./.
chr2	97847537	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:48
chr2	97847538	.	T	.	.	LowGQX	.	GT	./.
chr2	97847539	.	G	.	.	LowGQX	END=97847543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	97849160	.	A	.	.	LowGQX	END=97849175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97849176	.	A	.	.	LowGQX	.	GT	./.
chr2	97849177	.	T	.	.	LowGQX	END=97849218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97849219	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	97849220	.	G	.	.	LowGQX	END=97849226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97849227	.	A	.	.	LowGQX	.	GT	./.
chr2	97849228	.	G	.	.	LowGQX	END=97849233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97849234	.	C	.	.	LowGQX	.	GT	./.
chr2	97849235	.	T	.	.	LowGQX	END=97849250;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97849251	.	A	.	.	LowGQX	.	GT	./.
chr2	97849252	.	A	.	.	LowGQX	END=97849259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97849305	.	C	.	.	LowGQX	END=97849404	GT	./.
chr2	97850962	.	A	.	.	LowGQX	END=97850965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97850966	.	T	.	.	LowGQX	.	GT	./.
chr2	97850967	.	A	.	.	LowGQX	END=97850988;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97850989	.	T	.	.	LowGQX	.	GT	./.
chr2	97850990	.	G	.	.	LowGQX	END=97850991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97850992	.	A	.	.	LowGQX	.	GT	./.
chr2	97850993	.	T	.	.	LowGQX	END=97851028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97851029	.	T	.	.	LowGQX	.	GT	./.
chr2	97851030	.	T	.	.	LowGQX	END=97851033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97851034	.	T	.	.	LowGQX	END=97851116	GT	./.
chr2	97851161	.	C	.	.	LowGQX	END=97851260	GT	./.
chr2	97852899	.	A	.	.	LowGQX	END=97853151	GT	./.
chr2	97854733	.	A	.	.	LowGQX	END=97855040	GT	./.
chr2	97856624	.	G	.	.	LowGQX	END=97856931	GT	./.
chr2	97858504	.	A	.	.	LowGQX	END=97858508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97858509	.	A	.	.	LowGQX	END=97858803	GT	./.
chr2	97860427	.	A	.	.	LowGQX	END=97860430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:50
chr2	97860431	.	G	.	33.01	LowGQX	DP=3;MQ=53;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:53:3
chr2	97860432	.	T	.	.	LowGQX	END=97860472;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:53
chr2	97860473	.	G	.	36.01	LowGQX	DP=4;MQ=55;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:55:6
chr2	97860474	.	A	.	.	LowGQX	END=97860486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:55
chr2	97860487	.	T	C	9.10	LowGQX	BaseQRankSum=-1.026;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=55;MQ0=0;MQRankSum=1.026;QD=2.28;ReadPosRankSum=-1.026;SB=-19.68	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:38.52:39,0,39:55:9:0.500
chr2	97860488	.	G	.	.	LowGQX	END=97860526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:54
chr2	97860558	.	T	.	.	LowGQX	END=97860582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97860583	.	C	.	.	LowGQX	.	GT	./.
chr2	97860584	.	T	.	.	LowGQX	END=97860585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97860586	.	C	.	.	LowGQX	.	GT	./.
chr2	97860587	.	A	.	.	LowGQX	END=97860613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97860614	.	T	.	.	LowGQX	END=97860657	GT	./.
chr2	97862294	.	A	.	.	LowGQX	END=97862344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97862345	.	C	.	.	LowGQX	.	GT	./.
chr2	97862346	.	A	.	.	LowGQX	END=97862367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97862368	.	C	.	.	LowGQX	END=97862393	GT	./.
chr2	97862439	.	C	.	.	LowGQX	END=97862481	GT	./.
chr2	97862482	.	G	.	.	LowGQX	END=97862491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97862492	.	A	.	.	LowGQX	.	GT	./.
chr2	97862493	.	G	.	.	LowGQX	END=97862506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97862507	.	G	.	.	LowGQX	.	GT	./.
chr2	97862508	.	G	.	.	LowGQX	END=97862538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97864164	.	A	.	.	LowGQX	END=97864263	GT	./.
chr2	97864309	.	C	.	.	LowGQX	END=97864408	GT	./.
chr2	97866035	.	A	.	.	LowGQX	END=97866134	GT	./.
chr2	97866176	.	C	.	.	LowGQX	END=97866275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97867903	.	A	.	.	LowGQX	END=97867937	GT	./.
chr2	97867938	.	G	.	.	LowGQX	END=97867950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97867951	.	A	.	.	LowGQX	.	GT	./.
chr2	97867952	.	A	.	.	LowGQX	END=97867961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97867962	.	T	.	.	LowGQX	.	GT	./.
chr2	97867963	.	T	.	.	LowGQX	END=97867993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97867994	.	A	.	.	LowGQX	.	GT	./.
chr2	97867995	.	A	.	.	LowGQX	END=97868002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97868044	.	T	.	.	LowGQX	END=97868067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97868068	.	A	.	.	LowGQX	END=97868069	GT	./.
chr2	97868070	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97868071	.	A	.	.	LowGQX	END=97868072	GT	./.
chr2	97868073	.	G	.	.	LowGQX	END=97868076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97868077	.	A	.	.	LowGQX	.	GT	./.
chr2	97868078	.	T	.	.	LowGQX	END=97868088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97868089	.	G	.	.	LowGQX	END=97868125	GT	./.
chr2	97868126	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97868127	.	A	.	.	LowGQX	.	GT	./.
chr2	97868128	.	C	.	.	LowGQX	END=97868143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97869769	.	A	.	.	LowGQX	END=97869926	GT	./.
chr2	97869927	.	G	.	.	LowGQX	END=97869970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97869971	.	G	.	.	LowGQX	.	GT	./.
chr2	97869972	.	A	.	.	LowGQX	END=97869981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97869982	.	G	.	.	LowGQX	END=97869983	GT	./.
chr2	97869984	.	A	.	.	LowGQX	END=97869994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97869995	.	G	.	.	LowGQX	.	GT	./.
chr2	97869996	.	G	.	.	LowGQX	END=97870000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97870001	.	G	.	.	LowGQX	.	GT	./.
chr2	97870002	.	T	.	.	LowGQX	END=97870008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97870009	.	G	.	.	LowGQX	.	GT	./.
chr2	97870010	.	A	.	.	LowGQX	END=97870013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	97871641	.	A	.	.	LowGQX	END=97871885	GT	./.
chr2	97873512	.	A	.	.	LowGQX	END=97873756	GT	./.
chr2	97875382	.	A	.	.	LowGQX	END=97875426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:50
chr2	97875427	.	G	.	36.01	LowGQX	DP=4;MQ=55;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:55:6
chr2	97875428	.	G	.	.	LowGQX	END=97875480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:54
chr2	97875481	.	A	.	.	LowGQX	.	GT	./.
chr2	97875523	.	C	.	.	LowGQX	END=97875574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97875575	.	C	.	.	LowGQX	END=97875622	GT	./.
chr2	97877247	.	A	.	.	LowGQX	END=97877346	GT	./.
chr2	97877392	.	C	.	.	LowGQX	END=97877491	GT	./.
chr2	97879050	.	A	.	.	LowGQX;LowMQ	END=97879222	GT	./.
chr2	97879223	.	T	.	.	LowGQX	END=97879364	GT	./.
chr2	97881002	.	A	.	.	LowGQX	END=97881041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	97881042	.	T	.	.	LowGQX	.	GT	./.
chr2	97881043	.	T	.	.	LowGQX	END=97881101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	97881161	.	G	.	.	LowGQX	END=97881312	GT	./.
chr2	97881322	.	A	.	.	LowGQX	END=97881421	GT	./.
chr2	97882756	.	T	.	.	LowGQX	END=97882845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	97882846	.	T	.	.	LowGQX	END=97882855	GT	./.
chr2	97882875	.	T	.	.	LowGQX	END=97882974	GT	./.
chr2	97883023	.	C	.	.	LowGQX	END=97883122	GT	./.
chr2	97884751	.	A	.	.	LowGQX	END=97884789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	97884790	.	A	.	.	LowGQX	END=97884850	GT	./.
chr2	97884897	.	T	.	.	LowGQX	END=97884996	GT	./.
chr2	97890470	.	A	.	.	LowGQX	END=97890629	GT	./.
chr2	97899435	.	G	.	.	LowGQX;LowMQ	END=97899524	GT	./.
chr2	97899525	.	C	.	.	LowGQX	END=97899608	GT	./.
chr2	97906931	.	A	.	.	LowGQX;LowMQ	END=97907009	GT	./.
chr2	97907010	.	T	.	.	LowGQX	END=97907166	GT	./.
chr2	97907167	.	C	.	.	LowGQX;LowMQ	END=97907280	GT	./.
chr2	97909571	.	G	.	.	LowGQX	END=97909573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909574	.	T	.	.	LowGQX	.	GT	./.
chr2	97909575	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909576	.	T	.	.	LowGQX	.	GT	./.
chr2	97909577	.	T	.	.	LowGQX	END=97909582;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909583	.	A	.	.	LowGQX	.	GT	./.
chr2	97909584	.	T	.	.	LowGQX	END=97909585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909586	.	T	.	.	LowGQX	.	GT	./.
chr2	97909587	.	G	.	.	LowGQX	END=97909588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909589	.	C	.	.	LowGQX	.	GT	./.
chr2	97909590	.	A	.	.	LowGQX	END=97909594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909595	.	G	.	.	LowGQX	.	GT	./.
chr2	97909596	.	C	.	.	LowGQX	END=97909607;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909608	.	A	.	.	LowGQX	.	GT	./.
chr2	97909609	.	A	.	.	LowGQX	END=97909611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909612	.	G	.	.	LowGQX	END=97909614	GT	./.
chr2	97909615	.	G	.	.	LowGQX	END=97909619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909620	.	G	.	5.68	LowGQX	DP=1;MQ=47;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:47:0
chr2	97909621	.	T	.	.	LowGQX	END=97909622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909623	.	G	.	.	LowGQX	END=97909624	GT	./.
chr2	97909625	.	A	.	.	LowGQX	END=97909626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909627	.	A	.	.	LowGQX	END=97909629	GT	./.
chr2	97909630	.	T	.	.	LowGQX	END=97909631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909632	.	C	.	.	LowGQX	.	GT	./.
chr2	97909633	.	A	.	.	LowGQX	END=97909634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909635	.	C	.	.	LowGQX	.	GT	./.
chr2	97909636	.	A	.	.	LowGQX	END=97909642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909643	.	T	.	.	LowGQX	END=97909647	GT	./.
chr2	97909648	.	A	.	.	LowGQX	END=97909650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909651	.	A	.	.	LowGQX	.	GT	./.
chr2	97909652	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909653	.	T	.	.	LowGQX	END=97909655	GT	./.
chr2	97909656	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909657	.	G	.	.	LowGQX	.	GT	./.
chr2	97909658	.	A	.	.	LowGQX	END=97909660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909661	.	A	.	.	LowGQX	END=97909662	GT	./.
chr2	97909663	.	C	.	.	LowGQX	END=97909664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909665	.	G	.	.	LowGQX	.	GT	./.
chr2	97909666	.	A	.	.	LowGQX	END=97909669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909670	.	G	.	.	LowGQX	.	GT	./.
chr2	97909671	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909672	.	A	.	.	LowGQX	END=97909673	GT	./.
chr2	97909674	.	T	.	.	LowGQX	END=97909677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909678	.	G	.	.	LowGQX	END=97909679	GT	./.
chr2	97909680	.	A	.	.	LowGQX	END=97909681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909682	.	A	.	.	LowGQX	.	GT	./.
chr2	97909683	.	G	.	.	LowGQX	END=97909686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909687	.	C	.	.	LowGQX	END=97909689	GT	./.
chr2	97909690	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909691	.	T	.	.	LowGQX	.	GT	./.
chr2	97909692	.	G	.	.	LowGQX	END=97909693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909694	.	G	.	.	LowGQX	.	GT	./.
chr2	97909695	.	A	.	.	LowGQX	END=97909701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909702	.	C	.	.	LowGQX	END=97909703	GT	./.
chr2	97909704	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909705	.	T	.	.	LowGQX	END=97909709	GT	./.
chr2	97909710	.	C	.	.	LowGQX	END=97909711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909712	.	G	.	.	LowGQX	.	GT	./.
chr2	97909713	.	G	.	.	LowGQX	END=97909715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909716	.	C	.	.	LowGQX	.	GT	./.
chr2	97909717	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909718	.	C	.	.	LowGQX	.	GT	./.
chr2	97909719	.	A	.	.	LowGQX	END=97909724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909725	.	G	.	.	LowGQX	.	GT	./.
chr2	97909726	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909727	.	A	.	.	LowGQX	.	GT	./.
chr2	97909728	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909729	.	A	.	.	LowGQX	END=97909730	GT	./.
chr2	97909731	.	G	.	.	LowGQX	END=97909733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909734	.	G	.	.	LowGQX	.	GT	./.
chr2	97909735	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909736	.	A	.	.	LowGQX	.	GT	./.
chr2	97909737	.	T	.	.	LowGQX	END=97909740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909741	.	A	.	.	LowGQX	END=97909742	GT	./.
chr2	97909743	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909744	.	C	.	.	LowGQX	.	GT	./.
chr2	97909745	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909746	.	G	.	.	LowGQX	END=97909748	GT	./.
chr2	97909749	.	G	.	.	LowGQX	END=97909752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909753	.	A	.	.	LowGQX	.	GT	./.
chr2	97909754	.	T	.	.	LowGQX	END=97909765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	97909766	.	G	.	.	LowGQX	.	GT	./.
chr2	97910882	.	T	.	.	LowGQX	END=97910955	GT	./.
chr2	97910956	.	T	.	.	LowGQX;LowMQ	END=97911109	GT	./.
chr2	97911110	.	A	.	.	LowGQX	END=97911808	GT	./.
chr2	97913201	.	A	.	.	LowGQX	END=97913407	GT	./.
chr2	97914806	.	T	.	.	LowGQX	END=97914965	GT	./.
chr2	97915286	.	T	.	.	LowGQX	END=97915436	GT	./.
chr2	97915843	.	T	.	.	LowGQX	END=97915942	GT	./.
chr2	97918037	.	A	.	.	LowGQX;LowMQ	END=97918196	GT	./.
chr2	97927886	.	G	.	.	LowGQX;LowMQ	END=97927976	GT	./.
chr2	97927977	.	A	.	.	LowGQX	END=97927978	GT	./.
chr2	97927979	.	A	.	.	LowGQX;LowMQ	END=97928045	GT	./.
chr2	98000756	.	C	.	.	LowGQX	END=98001185	GT	./.
chr2	98001471	.	G	.	.	LowGQX	END=98001630	GT	./.
chr2	98123407	.	A	.	.	LowGQX	END=98123415	GT	./.
chr2	98123416	.	T	.	.	LowGQX;LowMQ	END=98123441	GT	./.
chr2	98123442	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123443	.	G	.	33	LowGQX;LowMQ	DP=4;MQ=14;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:14:3
chr2	98123444	.	A	.	.	LowGQX;LowMQ	END=98123449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123450	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123451	.	T	.	.	LowGQX;LowMQ	END=98123461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123462	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123463	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123464	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123465	.	A	.	.	LowGQX;LowMQ	END=98123467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123468	.	T	.	.	LowGQX;LowMQ	END=98123469	GT	./.
chr2	98123470	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123471	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123472	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123473	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123474	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123475	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123476	.	A	.	.	LowGQX;LowMQ	END=98123478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123479	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123480	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123481	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123482	.	A	.	.	LowGQX;LowMQ	END=98123483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123484	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123485	.	T	.	.	LowGQX;LowMQ	END=98123486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123487	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123488	.	T	.	.	LowGQX;LowMQ	END=98123493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123494	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123495	.	A	.	.	LowGQX;LowMQ	END=98123504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123505	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123506	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123507	.	A	.	.	LowGQX;LowMQ	END=98123508	GT	./.
chr2	98123509	.	C	.	.	LowGQX;LowMQ	END=98123510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123511	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123512	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123513	.	C	.	33	LowGQX;LowMQ	DP=4;MQ=14;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:14:3
chr2	98123514	.	A	.	33	LowGQX;LowMQ	DP=4;MQ=14;MQ0=3	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:14:3
chr2	98123515	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123516	.	A	.	.	LowGQX;LowMQ	END=98123518;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123519	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123520	.	C	.	.	LowGQX;LowMQ	END=98123530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123531	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123532	.	A	.	.	LowGQX;LowMQ	END=98123539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123540	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123541	.	A	.	.	LowGQX;LowMQ	END=98123544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123545	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123546	.	T	.	.	LowGQX;LowMQ	END=98123548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123549	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123550	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123551	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123552	.	A	.	.	LowGQX;LowMQ	END=98123555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123556	.	T	.	.	LowGQX;LowMQ	END=98123557	GT	./.
chr2	98123558	.	T	.	.	LowGQX;LowMQ	END=98123560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123561	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	98123562	.	A	.	.	LowGQX;LowMQ	END=98123563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123564	.	T	.	.	LowGQX;LowMQ	END=98123565	GT	./.
chr2	98123566	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:4:3:14
chr2	98123965	.	C	.	.	LowGQX	END=98124123	GT	./.
chr2	98124383	.	A	.	.	LowGQX	END=98124542	GT	./.
chr2	98125991	.	T	.	.	LowGQX	END=98126193	GT	./.
chr2	98126194	.	T	.	.	LowGQX;LowMQ	END=98126196	GT	./.
chr2	98127530	.	G	.	.	LowGQX;LowMQ	END=98127624	GT	./.
chr2	98127625	.	A	.	.	LowGQX	END=98128177	GT	./.
chr2	98128178	.	G	.	.	LowGQX	END=98128193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:45
chr2	98128194	.	G	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=45;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:45:3:1.000
chr2	98128195	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=45;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:45:3:1.000
chr2	98128196	.	T	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=45;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:45:3:1.000
chr2	98128197	.	A	.	.	LowGQX	END=98128255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:45
chr2	98128256	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=45;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:45:3:1.000
chr2	98128257	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:45
chr2	98128258	.	G	C	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=45;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:45:3:1.000
chr2	98128259	.	A	.	.	LowGQX	END=98128312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:45
chr2	98128313	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=45;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:45:3:1.000
chr2	98128314	.	T	.	.	LowGQX	END=98128316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:45
chr2	98128317	.	T	.	.	LowGQX	END=98128579	GT	./.
chr2	98129631	.	A	.	.	LowGQX	END=98129669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	98129670	.	C	T	14.78	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=25;MQ0=0;QD=7.39;SB=-29.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:25:3:1.000
chr2	98129671	.	A	.	.	LowGQX	END=98129681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:25
chr2	98129682	.	T	C	14.78	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=25;MQ0=0;QD=7.39;SB=-29.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:25:3:1.000
chr2	98129683	.	G	A	14.78	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=25;MQ0=0;QD=7.39;SB=-29.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:25:3:1.000
chr2	98129684	.	C	.	.	LowGQX	END=98129689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:25
chr2	98129690	.	T	C	14.78	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=25;MQ0=0;QD=7.39;SB=-29.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:25:3:1.000
chr2	98129691	.	G	A	14.78	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=25;MQ0=0;QD=7.39;SB=-29.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:25:3:1.000
chr2	98129692	.	A	.	.	LowGQX	END=98129706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:25
chr2	98129707	.	G	T	14.78	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=25;MQ0=0;QD=7.39;SB=-29.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:25:3:1.000
chr2	98129708	.	G	.	.	LowGQX	END=98129715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:25
chr2	98129716	.	A	G	14.78	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=25;MQ0=0;QD=7.39;SB=-29.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:25:3:1.000
chr2	98129717	.	C	T	14.78	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=25;MQ0=0;QD=7.39;SB=-29.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:25:3:1.000
chr2	98129718	.	A	.	.	LowGQX	END=98129730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	98129731	.	C	.	3.20	LowGQX	DP=1;MQ=25;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:25:0
chr2	98129732	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr2	98129733	.	A	.	3.20	LowGQX	DP=1;MQ=25;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:25:0
chr2	98129734	.	T	.	3.20	LowGQX	DP=1;MQ=25;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:25:0
chr2	98129735	.	A	.	.	LowGQX	END=98129743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	98129744	.	C	.	3.20	LowGQX	DP=1;MQ=25;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:25:0
chr2	98129745	.	T	.	.	LowGQX	END=98129786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	98129787	.	A	.	.	LowGQX	END=98129826	GT	./.
chr2	98132123	.	T	.	.	LowGQX;LowMQ	END=98132244	GT	./.
chr2	98132245	.	C	.	.	LowGQX	END=98132403	GT	./.
chr2	98132404	.	A	.	.	LowGQX;LowMQ	END=98132472	GT	./.
chr2	98139757	.	T	.	.	LowGQX	END=98139930	GT	./.
chr2	98148701	.	T	.	.	LowGQX	END=98148860	GT	./.
chr2	98152692	.	G	.	.	LowGQX	END=98152994	GT	./.
chr2	98154560	.	A	.	.	LowGQX	END=98154861	GT	./.
chr2	98156423	.	C	.	.	LowGQX	END=98156727	GT	./.
chr2	98158303	.	T	.	.	LowGQX	END=98158605	GT	./.
chr2	98160179	.	C	.	.	LowGQX	END=98160483	GT	./.
chr2	98162058	.	G	.	.	LowGQX	END=98162359	GT	./.
chr2	98163928	.	G	.	.	LowGQX	END=98163941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98163942	.	A	.	.	LowGQX	END=98164229	GT	./.
chr2	98165811	.	G	.	.	LowGQX	END=98165823	GT	./.
chr2	98165824	.	A	.	.	LowGQX	END=98165831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98165832	.	T	.	.	LowGQX	.	GT	./.
chr2	98165833	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98165834	.	C	.	.	LowGQX	.	GT	./.
chr2	98165835	.	T	.	.	LowGQX	END=98165859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98165860	.	T	.	.	LowGQX	.	GT	./.
chr2	98165861	.	T	.	.	LowGQX	END=98165865;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98165866	.	C	.	.	LowGQX	.	GT	./.
chr2	98165867	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98165868	.	G	.	.	LowGQX	.	GT	./.
chr2	98165869	.	T	.	.	LowGQX	END=98165886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98165887	.	C	.	.	LowGQX	.	GT	./.
chr2	98165888	.	T	.	.	LowGQX	END=98165891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98165892	.	T	.	.	LowGQX	.	GT	./.
chr2	98165893	.	T	.	.	LowGQX	END=98165898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98165899	.	C	.	.	LowGQX	.	GT	./.
chr2	98165900	.	C	.	.	LowGQX	END=98165908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98165909	.	T	.	.	LowGQX	.	GT	./.
chr2	98165910	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98165911	.	T	.	.	LowGQX	.	GT	./.
chr2	98165912	.	C	.	.	LowGQX	END=98165913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98165914	.	C	.	.	LowGQX	END=98165917	GT	./.
chr2	98165918	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98165919	.	T	.	.	LowGQX	.	GT	./.
chr2	98165920	.	A	.	.	LowGQX	END=98165923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98165924	.	T	.	.	LowGQX	.	GT	./.
chr2	98165925	.	C	.	.	LowGQX	END=98165927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98165928	.	A	.	.	LowGQX	.	GT	./.
chr2	98165929	.	A	.	.	LowGQX	END=98165931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98165932	.	G	.	.	LowGQX	END=98165933	GT	./.
chr2	98165934	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98165935	.	T	.	.	LowGQX	.	GT	./.
chr2	98165936	.	C	.	.	LowGQX	END=98165937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98165938	.	T	.	.	LowGQX	END=98165941	GT	./.
chr2	98165942	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98165943	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	98165944	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98165945	.	C	.	.	LowGQX	.	GT	./.
chr2	98165946	.	A	.	.	LowGQX	END=98165952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98165953	.	G	.	.	LowGQX	END=98165954	GT	./.
chr2	98165955	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	98165956	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98165957	.	G	.	.	LowGQX	.	GT	./.
chr2	98165958	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98165959	.	A	.	.	LowGQX	END=98165960	GT	./.
chr2	98165961	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98165962	.	G	.	.	LowGQX	.	GT	./.
chr2	98165963	.	A	.	.	LowGQX	END=98165967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98166013	.	T	.	.	LowGQX	END=98166021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98166022	.	T	.	.	LowGQX	.	GT	./.
chr2	98166023	.	C	.	.	LowGQX	END=98166027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98166028	.	T	.	.	LowGQX	.	GT	./.
chr2	98166029	.	A	.	.	LowGQX	END=98166030;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98166031	.	A	.	.	LowGQX	.	GT	./.
chr2	98166032	.	A	.	.	LowGQX	END=98166036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98166037	.	G	.	.	LowGQX	.	GT	./.
chr2	98166038	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98166039	.	G	.	.	LowGQX	.	GT	./.
chr2	98166040	.	T	.	.	LowGQX	END=98166042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98166043	.	C	.	.	LowGQX	END=98166044	GT	./.
chr2	98166045	.	T	.	.	LowGQX	END=98166054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98166055	.	G	.	.	LowGQX	.	GT	./.
chr2	98166056	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98166057	.	C	.	.	LowGQX	.	GT	./.
chr2	98166058	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98166059	.	G	.	.	LowGQX	.	GT	./.
chr2	98166060	.	G	.	.	LowGQX	END=98166061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98166062	.	G	.	.	LowGQX	.	GT	./.
chr2	98166063	.	G	.	.	LowGQX	END=98166068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98166069	.	G	.	.	LowGQX	.	GT	./.
chr2	98166070	.	A	.	.	LowGQX	END=98166075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98166076	.	C	.	.	LowGQX	.	GT	./.
chr2	98166077	.	A	.	.	LowGQX	END=98166081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98166082	.	A	.	.	LowGQX	.	GT	./.
chr2	98166083	.	A	.	.	LowGQX	END=98166084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98166085	.	G	.	.	LowGQX	END=98166087	GT	./.
chr2	98166088	.	A	.	.	LowGQX	END=98166090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98166091	.	G	.	.	LowGQX	.	GT	./.
chr2	98166092	.	G	.	.	LowGQX	END=98166093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98166094	.	A	.	.	LowGQX	END=98166112	GT	./.
chr2	98167738	.	T	.	.	LowGQX	END=98167828	GT	./.
chr2	98167829	.	A	.	.	LowGQX	END=98167835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98167836	.	T	.	.	LowGQX	.	GT	./.
chr2	98167837	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98167879	.	T	.	.	LowGQX	END=98167881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98167882	.	A	.	.	LowGQX	.	GT	./.
chr2	98167883	.	C	.	.	LowGQX	END=98167895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98167896	.	T	.	.	LowGQX	END=98167897	GT	./.
chr2	98167898	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98167899	.	A	.	.	LowGQX	.	GT	./.
chr2	98167900	.	T	.	.	LowGQX	END=98167901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98167902	.	A	.	.	LowGQX	.	GT	./.
chr2	98167903	.	G	.	.	LowGQX	END=98167905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98167906	.	T	.	.	LowGQX	.	GT	./.
chr2	98167907	.	T	.	.	LowGQX	END=98167918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98167919	.	A	.	.	LowGQX	.	GT	./.
chr2	98167920	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98167921	.	G	.	.	LowGQX	END=98167922	GT	./.
chr2	98167923	.	C	.	.	LowGQX	END=98167924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98167925	.	G	.	.	LowGQX	.	GT	./.
chr2	98167926	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98167927	.	T	.	.	LowGQX	.	GT	./.
chr2	98167928	.	T	.	.	LowGQX	END=98167936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98167937	.	G	.	.	LowGQX	END=98167938	GT	./.
chr2	98167939	.	A	.	.	LowGQX	END=98167945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98167946	.	G	.	.	LowGQX	.	GT	./.
chr2	98167947	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98167948	.	A	.	.	LowGQX	.	GT	./.
chr2	98167949	.	A	.	.	LowGQX	END=98167956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98167957	.	G	.	.	LowGQX	END=98167958	GT	./.
chr2	98167959	.	G	.	.	LowGQX	END=98167978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98169560	.	A	.	.	LowGQX	END=98169869	GT	./.
chr2	98171509	.	T	.	.	LowGQX	END=98171608	GT	./.
chr2	98171653	.	G	.	.	LowGQX	END=98171752	GT	./.
chr2	98173386	.	T	.	.	LowGQX	END=98173485	GT	./.
chr2	98173531	.	A	.	.	LowGQX	END=98173630	GT	./.
chr2	98175191	.	A	.	.	LowGQX	END=98175347	GT	./.
chr2	98175393	.	G	.	.	LowGQX	END=98175492	GT	./.
chr2	98177057	.	A	.	.	LowGQX	END=98177120	GT	./.
chr2	98177121	.	A	.	.	LowGQX	END=98177123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	98177124	.	T	.	2.30	LowGQX	DP=1;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:27:0
chr2	98177125	.	T	.	.	LowGQX	END=98177304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	98177305	.	C	.	2.30	LowGQX	DP=1;MQ=27;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:27:0
chr2	98177306	.	G	.	.	LowGQX	END=98177358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:27
chr2	98192766	.	T	.	.	LowGQX	END=98192980	GT	./.
chr2	98195368	.	C	.	.	LowGQX	.	GT	./.
chr2	98195369	.	A	.	.	LowGQX	END=98195455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98195456	.	A	.	.	LowGQX	.	GT	./.
chr2	98195457	.	G	.	.	LowGQX	END=98195464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98195465	.	A	.	.	LowGQX	.	GT	./.
chr2	98195466	.	T	.	.	LowGQX	END=98195490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98195491	.	A	.	.	LowGQX	.	GT	./.
chr2	98195492	.	A	.	.	LowGQX	END=98195506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98196924	.	C	.	.	LowGQX	END=98197031	GT	./.
chr2	98201406	.	C	.	.	LowGQX	END=98201580	GT	./.
chr2	98201677	.	G	.	.	LowGQX	END=98201735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:57
chr2	98201736	.	C	.	.	LowGQX	END=98201774	GT	./.
chr2	98201775	.	T	.	.	LowGQX	END=98201781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	98201782	.	G	.	.	LowGQX	.	GT	./.
chr2	98201783	.	G	.	.	LowGQX	END=98201861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:48
chr2	98205957	.	T	.	.	LowGQX	END=98206148	GT	./.
chr2	98262492	.	A	.	.	LowGQX	END=98262654	GT	./.
chr2	98263517	.	T	.	.	LowGQX	END=98263616	GT	./.
chr2	98263805	.	A	.	.	LowGQX	END=98263908	GT	./.
chr2	98264387	.	G	.	.	LowGQX	END=98264573	GT	./.
chr2	98273313	.	C	.	.	LowGQX	END=98273332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98273333	.	G	.	.	LowGQX	.	GT	./.
chr2	98273334	.	C	.	.	LowGQX	END=98273384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98273385	.	A	.	.	LowGQX	.	GT	./.
chr2	98273386	.	T	.	.	LowGQX	END=98273425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98273586	.	C	.	.	LowGQX	END=98273595	GT	./.
chr2	98273596	.	C	.	.	LowGQX	END=98273644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98273645	.	G	.	.	LowGQX	.	GT	./.
chr2	98273646	.	G	.	.	LowGQX	END=98273666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98273667	.	A	.	.	LowGQX	.	GT	./.
chr2	98273668	.	A	.	.	LowGQX	END=98273673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98273674	.	C	.	.	LowGQX	END=98273675	GT	./.
chr2	98273676	.	C	.	.	LowGQX	END=98273679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98273680	.	A	.	.	LowGQX	.	GT	./.
chr2	98273681	.	A	.	.	LowGQX	END=98273685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98273892	.	G	.	.	LowGQX	END=98273903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98273904	.	A	.	.	LowGQX	.	GT	./.
chr2	98273905	.	C	.	.	LowGQX	END=98273962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98273963	.	T	.	.	LowGQX	.	GT	./.
chr2	98273964	.	C	.	.	LowGQX	END=98273991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98274404	.	A	.	.	LowGQX	END=98274582	GT	./.
chr2	98274684	.	T	.	.	LowGQX	END=98274783	GT	./.
chr2	98274888	.	A	.	.	LowGQX	END=98275108	GT	./.
chr2	98275340	.	A	.	.	LowGQX	END=98275468	GT	./.
chr2	98275813	.	A	.	.	LowGQX	END=98275895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	98275896	.	G	T	9.30	LowGQX	BaseQRankSum=1.026;DP=4;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=1.026;QD=2.32;ReadPosRankSum=-1.026;SB=-33.30	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:2,2:4:38.74:39,0,39:60:9:0.500
chr2	98275897	.	C	.	.	LowGQX	END=98275942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98277022	.	C	.	.	LowGQX	END=98277023	GT	./.
chr2	98277024	.	T	.	.	LowGQX	END=98277025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98277026	.	G	.	.	LowGQX	.	GT	./.
chr2	98277027	.	G	.	.	LowGQX	END=98277028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98277029	.	G	.	.	LowGQX	.	GT	./.
chr2	98277030	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98277031	.	T	.	.	LowGQX	END=98277034	GT	./.
chr2	98277035	.	T	.	.	LowGQX	END=98277036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98277037	.	T	.	.	LowGQX	.	GT	./.
chr2	98277038	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98277039	.	C	.	.	LowGQX	END=98277042	GT	./.
chr2	98277043	.	T	.	.	LowGQX	END=98277044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98277045	.	G	.	.	LowGQX	END=98277047	GT	./.
chr2	98277048	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98277049	.	G	.	.	LowGQX	END=98277050	GT	./.
chr2	98277051	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98277052	.	G	.	.	LowGQX	END=98277054	GT	./.
chr2	98277055	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98277056	.	A	.	.	LowGQX	END=98277121	GT	./.
chr2	98278328	.	G	.	.	LowGQX	END=98278427	GT	./.
chr2	98280220	.	C	.	.	LowGQX	END=98280379	GT	./.
chr2	98340449	.	A	.	.	PASS	END=98340477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	98340478	.	G	.	.	PASS	END=98340499;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	98340500	.	A	.	.	PASS	END=98340558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	98340559	.	C	.	.	PASS	END=98340619;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	98340620	.	C	.	.	PASS	END=98340650;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:60
chr2	98340651	.	T	.	.	PASS	END=98340800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:296:99:60
chr2	98340801	.	C	.	.	PASS	END=98340871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr2	98340872	.	G	.	.	PASS	END=98340883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	98340884	.	C	.	.	PASS	END=98340921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	98340922	.	G	.	.	PASS	END=98340935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	98340936	.	G	.	.	PASS	END=98340939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	98340940	.	T	.	18.99	LowGQX	DP=66;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:48:66:0.33:60:0
chr2	98340941	.	G	.	.	PASS	END=98340952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	98341082	.	C	.	.	PASS	END=98341087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:96:60
chr2	98341088	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:72:60
chr2	98341089	.	G	.	.	PASS	END=98341090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr2	98341091	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:51:60
chr2	98341092	.	G	.	.	PASS	END=98341093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:90:60
chr2	98341094	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:48:60
chr2	98341095	.	C	.	.	PASS	END=98341114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr2	98341115	.	A	.	.	PASS	END=98341123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:69:60
chr2	98341124	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr2	98341125	.	G	.	.	PASS	END=98341126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	98341127	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:20:27:60
chr2	98341128	.	C	.	.	PASS	END=98341131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr2	98341132	.	T	.	.	PASS	END=98341137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	98341138	.	A	.	.	LowGQX	END=98341152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr2	98341153	.	G	.	.	PASS	END=98341155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	98341156	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:1:60
chr2	98341157	.	C	.	.	LowGQX	END=98341161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	98341162	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:18:60
chr2	98341163	.	G	.	.	LowGQX	END=98341164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	98341165	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr2	98341166	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr2	98341167	.	C	.	.	LowGQX	END=98341173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	98341174	.	A	.	39.02	LowGQX	DP=6;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:6:9.03:60:9
chr2	98341175	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr2	98341176	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr2	98341177	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr2	98341178	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr2	98341179	.	A	.	42.02	LowGQX	DP=6;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:6:12.03:60:12
chr2	98341180	.	G	.	.	LowGQX	END=98341181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	98341288	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr2	98341289	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:12:60
chr2	98341290	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:18:60
chr2	98341291	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr2	98341292	.	C	.	.	LowGQX	END=98341293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	98341294	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr2	98341295	.	C	.	.	LowGQX	END=98341297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	98341298	.	T	.	.	LowGQX	END=98341300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	98341301	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:9:60
chr2	98341302	.	C	.	.	LowGQX	END=98341303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	98341304	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr2	98341305	.	C	.	.	LowGQX	END=98341311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr2	98341312	.	A	.	.	LowGQX	END=98341324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	98341325	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr2	98341326	.	G	.	.	LowGQX	END=98341347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	98341348	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:10:30:60
chr2	98341349	.	G	.	.	LowGQX	END=98341372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	98341373	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:0:60
chr2	98341374	.	C	.	.	LowGQX	END=98341377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	98341378	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:1:60
chr2	98341379	.	T	.	.	LowGQX	END=98341382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:24:60
chr2	98341383	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr2	98341384	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:27:60
chr2	98341385	.	G	.	.	PASS	END=98341387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	98341504	.	G	.	.	PASS	END=98341510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr2	98341511	.	G	.	.	PASS	END=98341520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	98341521	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:33:60
chr2	98341522	.	C	.	.	PASS	END=98341523;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:54:60
chr2	98341524	.	C	.	.	PASS	END=98341530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:60
chr2	98341531	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:47:60
chr2	98341532	.	C	.	.	PASS	END=98341566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr2	98341567	.	G	.	.	PASS	END=98341572;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr2	98341573	.	G	.	.	PASS	END=98341640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:93:60
chr2	98341641	.	G	.	.	PASS	END=98341674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:84:60
chr2	98341675	.	C	.	.	PASS	END=98341718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:60
chr2	98341719	.	T	.	.	PASS	END=98341720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr2	98341721	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:57:60
chr2	98341722	.	G	.	.	PASS	END=98341732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:63:60
chr2	98341733	.	T	.	.	PASS	END=98341735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:48:60
chr2	98341736	.	G	.	.	PASS	END=98341738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr2	98341739	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:42:60
chr2	98341740	.	G	.	.	PASS	END=98341743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:60:60
chr2	98341744	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:27:60
chr2	98341745	.	G	.	.	PASS	END=98341750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr2	98341751	.	T	.	.	PASS	END=98341756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr2	98341757	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:21:60
chr2	98341758	.	C	.	.	PASS	END=98341759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr2	98341760	.	T	.	.	PASS	END=98341761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:42:60
chr2	98341762	.	G	.	.	PASS	END=98341766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:60
chr2	98349295	.	G	.	.	PASS	END=98349298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:60:60
chr2	98349299	.	G	.	.	PASS	END=98349303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr2	98349304	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:60
chr2	98349305	.	A	.	.	PASS	END=98349310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:60
chr2	98349311	.	C	.	.	PASS	END=98349338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:60
chr2	98349339	.	C	.	.	PASS	END=98349363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:78:60
chr2	98349364	.	G	.	.	PASS	END=98349377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	98349378	.	C	.	.	PASS	END=98349403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	98349404	.	G	.	.	PASS	END=98349535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	98349537	.	C	.	.	PASS	END=98349570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	98349571	.	C	.	.	PASS	END=98349700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	98349701	.	T	G	67.08	LowQD;SB	BaseQRankSum=-2.841;DP=130;Dels=0.00;FS=39.434;HRun=3;HaplotypeScore=55.2789;MQ=60;MQ0=0;MQRankSum=-0.319;QD=0.52;ReadPosRankSum=-1.093;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:105,25:130:97.07:97,0,2185:60:67:0.192
chr2	98349702	.	G	.	.	PASS	END=98349777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	98349778	.	T	.	.	PASS	END=98349829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	98349830	.	T	.	.	PASS	END=98349882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	98349883	.	T	.	.	PASS	END=98349939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	98349940	.	G	.	.	PASS	END=98349947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	98349956	.	A	.	.	PASS	END=98350083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	98350084	.	G	.	.	PASS	END=98350101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	98350102	.	G	.	.	PASS	END=98350109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	98350932	.	C	.	.	PASS	END=98350935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:84:60
chr2	98350936	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:63:60
chr2	98350937	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:99:60
chr2	98350938	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:35:28:60
chr2	98350939	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:99:60
chr2	98350940	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:39:60
chr2	98350941	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:99:60
chr2	98350942	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:63:60
chr2	98350943	.	C	.	.	PASS	END=98350944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:99:60
chr2	98350945	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:75:60
chr2	98350946	.	G	.	.	PASS	END=98350950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:93:60
chr2	98350951	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:75:60
chr2	98350952	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:99:60
chr2	98350953	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:38:25:60
chr2	98350954	.	C	.	.	PASS	END=98350955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr2	98350956	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:75:60
chr2	98350957	.	G	.	.	PASS	END=98350967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr2	98350968	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:69:60
chr2	98350969	.	C	.	.	PASS	END=98350994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:77:60
chr2	98350995	.	C	.	.	PASS	END=98351017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	98351018	.	C	.	.	PASS	END=98351043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	98351044	.	C	.	.	PASS	END=98351098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	98351099	.	A	.	.	PASS	END=98351155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	98351156	.	G	.	.	PASS	END=98351172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	98351173	.	C	.	.	PASS	END=98351198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	98351199	.	G	.	.	PASS	END=98351221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	98351222	.	G	.	.	PASS	END=98351226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	98351662	.	A	.	.	PASS	END=98351673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	98351674	.	G	.	.	PASS	END=98351722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	98351723	.	G	.	.	PASS	END=98351823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	98351824	.	C	.	.	PASS	END=98351864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:97:60
chr2	98351865	.	T	.	.	PASS	END=98351893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr2	98351894	.	C	.	.	PASS	END=98351895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:54:60
chr2	98351896	.	G	.	.	PASS	END=98351897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:90:60
chr2	98351898	.	A	.	.	PASS	END=98351899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:75:60
chr2	98351900	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:99:60
chr2	98351901	.	A	.	.	PASS	END=98351902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:69:60
chr2	98351903	.	T	.	.	PASS	END=98351905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:60:60
chr2	98351906	.	C	.	.	PASS	END=98351907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:48:60
chr2	98351908	.	G	.	.	PASS	END=98351909;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:60
chr2	98351910	.	T	.	69.12	PASS	DP=33;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:24:33:39.12:60:39
chr2	98351911	.	C	.	.	PASS	END=98351912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	98351913	.	G	.	.	PASS	END=98351914;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:57:60
chr2	98351915	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:78:60
chr2	98351916	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:39:60
chr2	98351917	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:60:60
chr2	98351918	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:45:60
chr2	98351919	.	G	.	.	PASS	END=98351920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr2	98351921	.	T	.	69.12	PASS	DP=31;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:24:31:39.12:60:39
chr2	98351922	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:51:60
chr2	98351923	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:33:60
chr2	98351924	.	G	.	.	PASS	END=98351925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr2	98351926	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:30:60
chr2	98351927	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:78:60
chr2	98351928	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:30:60
chr2	98351929	.	G	.	.	PASS	END=98351931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	98351932	.	T	G	6.99	LowGQX;LowQD;SB	BaseQRankSum=-1.767;DP=29;Dels=0.00;FS=3.010;HRun=3;HaplotypeScore=26.5137;MQ=60;MQ0=0;MQRankSum=-0.665;QD=0.24;ReadPosRankSum=1.308;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:19,10:29:36.02:36,0,237:60:7:0.345
chr2	98351933	.	G	.	.	PASS	END=98351934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr2	98351935	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:57:60
chr2	98351936	.	C	.	.	PASS	END=98351937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr2	98351938	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:24:60
chr2	98351939	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:75:60
chr2	98351940	.	G	.	.	PASS	END=98351941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr2	98351942	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:48:60
chr2	98351943	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:36:60
chr2	98351944	.	T	G	9.69	LowGQX;LowQD;SB	BaseQRankSum=0.446;DP=24;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=29.4899;MQ=60;MQ0=0;MQRankSum=-0.365;QD=0.40;ReadPosRankSum=0.203;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:19,4:24:39.19:39,0,126:60:10:0.174
chr2	98351945	.	C	.	54.06	LowGQX	DP=23;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:15:23:24.06:60:24
chr2	98351946	.	G	.	.	PASS	END=98351948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	98351949	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:24:12:60
chr2	98351950	.	G	.	.	PASS	END=98351952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:69:60
chr2	98351953	.	T	.	6.89	LowGQX	DP=26;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:11:26:0.02:60:0
chr2	98351954	.	G	.	.	PASS	END=98351956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:90:60
chr2	98351957	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:54:60
chr2	98351958	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:99:60
chr2	98351959	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:63:60
chr2	98351960	.	G	.	.	PASS	END=98351970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:96:60
chr2	98353885	.	G	.	.	PASS	END=98353887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:60
chr2	98353888	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:69:60
chr2	98353889	.	C	.	.	PASS	END=98353898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr2	98353899	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:73:60
chr2	98353900	.	T	.	.	PASS	END=98353931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:92:60
chr2	98353932	.	C	.	.	PASS	END=98353944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	98353945	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:65:57:60
chr2	98353946	.	C	.	.	PASS	END=98353980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	98353981	.	G	.	.	PASS	END=98354118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	98354119	.	C	.	.	PASS	END=98354138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	98354139	.	G	T	1327.32	PASS	BaseQRankSum=1.221;DP=107;Dels=0.00;FS=3.290;HRun=1;HaplotypeScore=13.4043;MQ=60;MQ0=0;MQRankSum=0.859;QD=12.40;ReadPosRankSum=1.383;SB=-396.02	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:57,50:107:99:1357,0,1594:60:99:0.467
chr2	98354140	.	C	.	.	PASS	END=98354167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	98354168	.	G	.	.	PASS	END=98354188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	98354189	.	C	.	.	PASS	END=98354228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr2	98354229	.	G	.	.	PASS	END=98354326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr2	98354327	.	G	.	.	PASS	END=98354361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr2	98354362	.	C	.	.	PASS	END=98354378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	98354379	.	A	.	.	PASS	END=98354451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	98354452	.	G	.	.	PASS	END=98354510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	98354511	.	G	A	1047.93	PASS	BaseQRankSum=2.282;DP=115;Dels=0.00;FS=0.806;HRun=1;HaplotypeScore=12.3604;MQ=60;MQ0=0;MQRankSum=0.480;QD=9.11;ReadPosRankSum=1.711;SB=-366.45	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:69,44:115:99:1078,0,1898:60:99:0.389
chr2	98354512	.	T	.	.	PASS	END=98354553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	98354554	.	G	.	.	PASS	END=98354599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	98354600	.	G	.	.	PASS	END=98354615;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	98354616	.	A	.	.	PASS	END=98354621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	98355787	.	C	.	.	PASS	END=98355811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	98355812	.	G	.	.	PASS	END=98355836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr2	98355837	.	G	.	.	PASS	END=98355933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr2	98355934	.	A	.	.	PASS	END=98355962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	98355963	.	C	.	.	PASS	END=98355979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	98355980	.	A	.	.	PASS	END=98355989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	98355990	.	G	A	1251.93	PASS	BaseQRankSum=1.513;DP=86;Dels=0.00;FS=3.656;HRun=0;HaplotypeScore=8.7230;MQ=60;MQ0=0;MQRankSum=1.029;QD=14.56;ReadPosRankSum=-0.501;SB=-54.39	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:41,45:86:99:1282,0,1096:60:99:0.523
chr2	98355991	.	C	.	.	PASS	END=98356012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	98373561	.	T	.	.	LowGQX	END=98373846	GT	./.
chr2	98375355	.	C	.	.	LowGQX	END=98375516	GT	./.
chr2	98376114	.	C	.	.	LowGQX	END=98376129	GT	./.
chr2	98376130	.	A	.	.	LowGQX	END=98376131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376132	.	G	.	.	LowGQX	.	GT	./.
chr2	98376133	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376134	.	G	.	.	LowGQX	.	GT	./.
chr2	98376135	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376136	.	T	.	.	LowGQX	.	GT	./.
chr2	98376137	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376138	.	C	.	.	LowGQX	END=98376139	GT	./.
chr2	98376140	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376141	.	A	.	.	LowGQX	END=98376143	GT	./.
chr2	98376144	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376145	.	C	.	.	LowGQX	END=98376147	GT	./.
chr2	98376148	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376149	.	G	.	.	LowGQX	END=98376150	GT	./.
chr2	98376151	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376152	.	C	.	.	LowGQX	.	GT	./.
chr2	98376153	.	G	.	.	LowGQX	END=98376155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376156	.	T	.	.	LowGQX	END=98376157	GT	./.
chr2	98376158	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376159	.	A	.	.	LowGQX	END=98376161	GT	./.
chr2	98376162	.	G	.	.	LowGQX	END=98376163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376164	.	A	.	.	LowGQX	.	GT	./.
chr2	98376165	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376166	.	T	.	.	LowGQX	.	GT	./.
chr2	98376167	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376168	.	A	.	.	LowGQX	.	GT	./.
chr2	98376169	.	A	.	.	LowGQX	END=98376170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376171	.	T	.	.	LowGQX	END=98376172	GT	./.
chr2	98376173	.	A	.	.	LowGQX	END=98376181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376182	.	T	.	.	LowGQX	.	GT	./.
chr2	98376183	.	G	.	.	LowGQX	END=98376185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376186	.	T	.	.	LowGQX	.	GT	./.
chr2	98376187	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376188	.	G	.	.	LowGQX	.	GT	./.
chr2	98376189	.	C	.	.	LowGQX	END=98376197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376198	.	C	.	.	LowGQX	.	GT	./.
chr2	98376199	.	T	.	.	LowGQX	END=98376207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376208	.	C	.	.	LowGQX	END=98376209	GT	./.
chr2	98376210	.	G	.	.	LowGQX	END=98376211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98376212	.	G	.	.	LowGQX	.	GT	./.
chr2	98376213	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98377054	.	A	.	.	LowGQX	END=98377153	GT	./.
chr2	98377255	.	C	.	.	LowGQX	END=98377406	GT	./.
chr2	98378497	.	C	.	.	LowGQX	END=98378685	GT	./.
chr2	98382576	.	C	.	.	LowGQX	END=98382726	GT	./.
chr2	98382940	.	C	.	.	LowGQX	END=98383065	GT	./.
chr2	98388699	.	C	.	.	LowGQX	END=98388879	GT	./.
chr2	98388880	.	T	.	.	LowGQX	END=98388927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98392305	.	C	.	.	LowGQX	END=98392481	GT	./.
chr2	98408848	.	C	.	.	LowGQX	END=98408863	GT	./.
chr2	98408864	.	A	.	.	LowGQX	END=98408867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98408868	.	C	.	.	LowGQX	.	GT	./.
chr2	98408869	.	G	.	.	LowGQX	END=98408897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98408898	.	G	.	.	LowGQX	.	GT	./.
chr2	98408899	.	G	.	.	LowGQX	END=98408901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98408902	.	G	.	.	LowGQX	.	GT	./.
chr2	98408903	.	G	.	.	LowGQX	END=98408908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98408909	.	C	.	.	LowGQX	.	GT	./.
chr2	98408910	.	A	.	.	LowGQX	END=98408935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98408936	.	C	.	.	LowGQX	.	GT	./.
chr2	98408937	.	T	.	.	LowGQX	END=98408939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98408940	.	T	.	.	LowGQX	.	GT	./.
chr2	98408941	.	A	.	.	LowGQX	END=98408944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98408945	.	G	.	.	LowGQX	.	GT	./.
chr2	98408946	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98408947	.	C	.	.	LowGQX	.	GT	./.
chr2	98408948	.	T	.	.	LowGQX	END=98408952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98408953	.	A	.	.	LowGQX	.	GT	./.
chr2	98408954	.	T	.	.	LowGQX	END=98408957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98408958	.	C	.	.	LowGQX	.	GT	./.
chr2	98408959	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98408960	.	A	.	.	LowGQX	.	GT	./.
chr2	98408961	.	G	.	.	LowGQX	END=98408967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98408968	.	G	.	.	LowGQX	END=98408969	GT	./.
chr2	98408970	.	A	.	.	LowGQX	END=98408976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98408977	.	C	.	.	LowGQX	.	GT	./.
chr2	98408978	.	T	.	.	LowGQX	END=98408983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98408984	.	T	.	.	LowGQX	.	GT	./.
chr2	98408985	.	G	.	.	LowGQX	END=98408990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98408991	.	A	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr2	98408992	.	C	.	.	LowGQX	END=98408995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98408996	.	C	.	.	LowGQX	.	GT	./.
chr2	98408997	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98408998	.	G	.	.	LowGQX	END=98408999	GT	./.
chr2	98409000	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98409001	.	T	.	.	LowGQX	END=98409002	GT	./.
chr2	98409003	.	G	.	.	LowGQX	END=98409004;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98409005	.	A	.	.	LowGQX	.	GT	./.
chr2	98409006	.	A	.	.	LowGQX	END=98409011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98409012	.	T	.	.	LowGQX	END=98409125	GT	./.
chr2	98409126	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98409127	.	C	.	.	LowGQX	.	GT	./.
chr2	98409128	.	C	.	.	LowGQX	END=98409134;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98409135	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	98409136	.	C	.	.	LowGQX	END=98409182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98409183	.	C	.	.	LowGQX	.	GT	./.
chr2	98409184	.	A	.	.	LowGQX	END=98409214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98409215	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	98409216	.	T	.	.	LowGQX	END=98409281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98409282	.	G	T	4.97	LowGQX;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=5;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=2.48;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:30.11:33,0,30:60:5:0.500
chr2	98409283	.	G	.	.	LowGQX	END=98409284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	98409285	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	98409286	.	C	.	.	LowGQX	END=98409364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98409365	.	T	.	.	LowGQX	END=98409447	GT	./.
chr2	98409857	.	C	.	.	LowGQX	END=98410016	GT	./.
chr2	98411392	.	C	.	.	LowGQX	END=98411410	GT	./.
chr2	98411411	.	A	.	.	LowGQX	END=98411420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98411421	.	G	.	.	LowGQX	.	GT	./.
chr2	98411422	.	A	.	.	LowGQX	END=98411424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	98411425	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	98411426	.	A	.	.	LowGQX	END=98411475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98411476	.	G	.	.	LowGQX	.	GT	./.
chr2	98411477	.	T	.	.	LowGQX	END=98411488;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98411489	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	98411490	.	C	.	.	LowGQX	.	GT	./.
chr2	98411491	.	A	.	.	LowGQX	END=98411496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98411497	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	98411498	.	A	.	.	LowGQX	END=98411512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	98411513	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	98411514	.	A	.	.	LowGQX	END=98411515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	98411516	.	C	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	98411517	.	C	.	.	LowGQX	END=98411520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	98411521	.	G	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr2	98411522	.	G	.	.	LowGQX	END=98411540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:3:60
chr2	98411541	.	C	.	33.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr2	98411542	.	C	.	.	LowGQX	END=98411560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	98411561	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	98411562	.	T	.	.	LowGQX	END=98411564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	98411565	.	A	.	.	LowGQX	.	GT	./.
chr2	98411566	.	A	.	.	LowGQX	END=98411570;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98411571	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	98411572	.	A	.	.	LowGQX	END=98411576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98411577	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	98411578	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98412660	.	A	.	.	LowGQX	END=98412804	GT	./.
chr2	98412805	.	G	.	.	LowGQX	END=98412879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98413306	.	C	.	.	LowGQX	END=98413449	GT	./.
chr2	98413827	.	C	.	.	LowGQX	END=98413979	GT	./.
chr2	98418341	.	G	.	.	LowGQX	END=98418440	GT	./.
chr2	98418890	.	C	.	.	LowGQX	END=98419000	GT	./.
chr2	98419074	.	A	.	.	LowGQX	END=98419127	GT	./.
chr2	98419128	.	G	.	.	LowGQX	END=98419181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98419182	.	G	.	.	LowGQX	.	GT	./.
chr2	98419183	.	A	.	.	LowGQX	END=98419184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98419185	.	A	.	.	LowGQX	.	GT	./.
chr2	98419186	.	G	.	.	LowGQX	END=98419189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98419190	.	A	.	.	LowGQX	.	GT	./.
chr2	98419191	.	G	.	.	LowGQX	END=98419197;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98419198	.	T	.	.	LowGQX	.	GT	./.
chr2	98419199	.	T	.	.	LowGQX	END=98419227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98419228	.	T	.	.	LowGQX	.	GT	./.
chr2	98419229	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98419230	.	T	.	.	LowGQX	.	GT	./.
chr2	98419231	.	T	.	.	LowGQX	END=98419232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98419233	.	A	.	.	LowGQX	.	GT	./.
chr2	98419234	.	C	.	.	LowGQX	END=98419246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98419247	.	A	.	.	LowGQX	.	GT	./.
chr2	98419248	.	C	.	.	LowGQX	END=98419270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98419271	.	A	.	.	LowGQX	.	GT	./.
chr2	98419272	.	A	.	.	LowGQX	END=98419276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98419277	.	C	.	.	LowGQX	END=98419293	GT	./.
chr2	98421550	.	C	.	.	LowGQX	END=98421553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98421554	.	T	.	.	LowGQX	END=98421668	GT	./.
chr2	98421827	.	A	.	.	LowGQX	END=98421926	GT	./.
chr2	98422013	.	C	.	.	LowGQX	END=98422166	GT	./.
chr2	98426144	.	G	.	.	LowGQX	END=98426243	GT	./.
chr2	98427590	.	C	.	.	LowGQX	END=98427618	GT	./.
chr2	98427619	.	C	.	.	LowGQX	END=98427625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98427626	.	G	.	.	LowGQX	.	GT	./.
chr2	98427627	.	A	.	.	LowGQX	END=98427695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98428883	.	C	.	.	LowGQX	END=98429018	GT	./.
chr2	98429101	.	C	.	.	LowGQX	END=98429212	GT	./.
chr2	98430433	.	C	.	.	LowGQX	END=98430604	GT	./.
chr2	98430697	.	C	.	.	LowGQX	END=98430722	GT	./.
chr2	98430723	.	G	.	.	LowGQX	END=98430730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98430731	.	C	.	.	LowGQX	.	GT	./.
chr2	98430732	.	A	.	.	LowGQX	END=98430759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98430760	.	A	.	.	LowGQX	.	GT	./.
chr2	98430761	.	A	.	.	LowGQX	END=98430791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98430792	.	G	.	.	LowGQX	END=98430793	GT	./.
chr2	98430794	.	A	.	.	LowGQX	END=98430851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98431661	.	C	.	.	LowGQX	END=98431820	GT	./.
chr2	98435075	.	C	.	.	LowGQX	END=98435184	GT	./.
chr2	98449749	.	G	.	.	LowGQX	END=98449966	GT	./.
chr2	98451062	.	C	.	.	LowGQX	END=98451161	GT	./.
chr2	98451237	.	C	.	.	LowGQX	END=98451388	GT	./.
chr2	98453478	.	C	.	.	LowGQX	END=98453629	GT	./.
chr2	98458277	.	C	.	.	LowGQX	END=98458400	GT	./.
chr2	98460607	.	C	.	.	LowGQX	END=98460766	GT	./.
chr2	98475716	.	G	.	.	LowGQX	END=98475890	GT	./.
chr2	98504499	.	A	.	.	LowGQX	END=98504598	GT	./.
chr2	98525091	.	T	.	.	LowGQX	END=98525190	GT	./.
chr2	98543863	.	A	.	.	LowGQX	END=98543962	GT	./.
chr2	98611927	.	G	.	.	LowGQX	END=98612125	GT	./.
chr2	98709554	.	A	.	.	LowGQX	END=98709724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98709725	.	C	.	.	LowGQX	END=98709753	GT	./.
chr2	98732113	.	A	.	.	LowGQX	END=98732212	GT	./.
chr2	98735974	.	A	.	.	LowGQX	END=98736218	GT	./.
chr2	98736219	.	A	.	.	LowGQX	END=98736228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98737760	.	A	.	.	LowGQX	END=98737923	GT	./.
chr2	98744700	.	A	.	.	LowGQX	END=98744873	GT	./.
chr2	98750285	.	A	.	.	LowGQX	END=98750404	GT	./.
chr2	98779312	.	A	.	.	LowGQX	END=98779441	GT	./.
chr2	98795694	.	C	.	.	LowGQX	END=98795793	GT	./.
chr2	98797477	.	A	.	.	LowGQX	END=98797677	GT	./.
chr2	98804436	.	A	.	.	LowGQX	END=98804566	GT	./.
chr2	98804567	.	A	.	.	LowGQX	END=98804593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98804594	.	T	.	.	LowGQX	.	GT	./.
chr2	98809319	.	T	.	.	LowGQX	END=98809471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98809472	.	G	.	.	LowGQX	END=98809501	GT	./.
chr2	98810822	.	A	.	.	LowGQX	END=98810957	GT	./.
chr2	98828391	.	A	.	.	LowGQX	END=98828493	GT	./.
chr2	98833203	.	T	.	.	LowGQX	END=98833209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98833210	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	98833211	.	C	.	.	LowGQX	END=98833259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98833260	.	G	.	.	LowGQX	.	GT	./.
chr2	98833261	.	G	.	.	LowGQX	END=98833302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98833383	.	T	.	.	LowGQX	END=98833412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98833413	.	T	.	.	LowGQX	END=98833414	GT	./.
chr2	98833415	.	G	.	.	LowGQX	END=98833433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98833434	.	T	.	.	LowGQX	.	GT	./.
chr2	98833435	.	C	.	.	LowGQX	END=98833447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98833448	.	C	.	.	LowGQX	END=98833460	GT	./.
chr2	98833461	.	G	.	.	LowGQX	END=98833482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98834307	.	A	.	.	LowGQX	END=98834374	GT	./.
chr2	98834375	.	A	.	.	LowGQX	END=98834400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98834401	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=5;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	98834402	.	T	.	.	LowGQX	END=98834430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98834431	.	A	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	98834432	.	G	.	.	LowGQX	END=98834439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98834440	.	C	.	.	LowGQX	END=98834441	GT	./.
chr2	98834442	.	A	.	.	LowGQX	END=98834468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98834469	.	C	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	98834470	.	C	.	.	LowGQX	END=98834476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98834477	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	98834478	.	C	.	.	LowGQX	END=98834493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98844663	.	A	.	.	LowGQX	END=98844759	GT	./.
chr2	98844760	.	C	.	.	LowGQX	END=98844797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98846511	.	A	.	.	LowGQX	END=98846617	GT	./.
chr2	98846618	.	A	.	.	LowGQX	END=98846672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98851109	.	A	.	.	LowGQX	END=98851232	GT	./.
chr2	98852847	.	C	.	.	LowGQX	END=98852946	GT	./.
chr2	98853035	.	A	.	.	LowGQX	END=98853202	GT	./.
chr2	98858691	.	C	.	.	LowGQX	END=98858790	GT	./.
chr2	98861993	.	A	.	.	LowGQX	END=98862092	GT	./.
chr2	98866779	.	A	.	.	LowGQX	END=98866901	GT	./.
chr2	98872563	.	T	.	.	LowGQX	END=98872662	GT	./.
chr2	98887143	.	A	.	.	LowGQX	END=98887348	GT	./.
chr2	98906962	.	T	.	.	LowGQX	END=98906991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98906992	.	A	.	.	LowGQX	END=98907171	GT	./.
chr2	98914368	.	A	.	.	LowGQX	END=98914389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98914390	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	98914391	.	G	.	.	LowGQX	END=98914474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98914475	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	98914476	.	G	.	.	LowGQX	END=98914496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	98916500	.	C	.	.	LowGQX	END=98916681	GT	./.
chr2	98920163	.	A	.	.	LowGQX	END=98920267	GT	./.
chr2	98928280	.	A	.	.	LowGQX	END=98928315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98928316	.	T	.	.	LowGQX	.	GT	./.
chr2	98928317	.	T	.	.	LowGQX	END=98928330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98928331	.	G	.	.	LowGQX	.	GT	./.
chr2	98928332	.	A	.	.	LowGQX	END=98928358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98928359	.	C	.	.	LowGQX	.	GT	./.
chr2	98928360	.	A	.	.	LowGQX	END=98928412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98928413	.	A	.	.	LowGQX	END=98928814	GT	./.
chr2	98948137	.	T	.	.	LowGQX	END=98948236	GT	./.
chr2	98949673	.	C	.	.	LowGQX	END=98949772	GT	./.
chr2	98949885	.	T	.	.	LowGQX	END=98949984	GT	./.
chr2	98950350	.	A	.	.	LowGQX	END=98950449	GT	./.
chr2	98986388	.	T	.	.	PASS	END=98986401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr2	98986402	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:36:60
chr2	98986403	.	A	.	.	PASS	END=98986468;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:60
chr2	98986469	.	C	.	.	PASS	END=98986478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:66:60
chr2	98986479	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:30:60
chr2	98986480	.	C	.	.	PASS	END=98986505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:60
chr2	98986506	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:18:60
chr2	98986507	.	A	.	.	PASS	END=98986531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr2	98986532	.	C	.	.	PASS	END=98986549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:42:60
chr2	98986550	.	C	.	.	PASS	END=98986559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	98986560	.	C	.	.	PASS	END=98986579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	98986580	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:14:2:60
chr2	98986581	.	C	.	.	PASS	END=98986590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	98994099	.	A	.	.	PASS	END=98994133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	98994134	.	A	G	844.77	PASS	BaseQRankSum=0.270;DP=63;Dels=0.00;FS=0.998;HRun=0;HaplotypeScore=4.8826;MQ=60;MQ0=0;MQRankSum=0.616;QD=13.41;ReadPosRankSum=-0.104;SB=-455.81	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,35:63:99:875,0,608:60:99:0.556
chr2	98994135	.	T	.	.	PASS	END=98994203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:93:60
chr2	98994204	.	G	.	.	PASS	END=98994227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:84:60
chr2	98994228	.	C	.	.	PASS	END=98994242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr2	98994243	.	C	.	.	PASS	END=98994248;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:66:60
chr2	98994249	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:33:60
chr2	98994250	.	C	.	.	PASS	END=98994271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	98994272	.	C	.	.	PASS	END=98994283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr2	98994284	.	C	.	.	PASS	END=98994288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	98994289	.	C	.	.	PASS	END=98994295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	98994296	.	T	.	.	LowGQX	END=98994298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	98994299	.	G	.	.	PASS	END=98994300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:30:60
chr2	98994301	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:24:60
chr2	98994302	.	A	.	.	LowGQX	END=98994308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:18:60
chr2	98994309	.	T	.	.	LowGQX	END=98994313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	98994314	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:12:60
chr2	98994520	.	G	.	.	LowGQX	END=98994521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	98994522	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	98994523	.	T	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	98994524	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	98994525	.	G	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	98994526	.	G	.	.	LowGQX	END=98994529;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	98994530	.	A	.	.	LowGQX	END=98994531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	98994532	.	T	.	.	LowGQX	.	GT	./.
chr2	98994533	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr2	98994534	.	C	.	.	LowGQX	END=98994535;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	98994536	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr2	98994537	.	A	.	.	LowGQX	END=98994541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	98994542	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr2	98994543	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr2	98994544	.	G	.	4.68	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.01:60:0
chr2	98994545	.	C	.	.	LowGQX	END=98994547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	98994548	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr2	98994549	.	C	.	.	LowGQX	END=98994550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	98994551	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	98994552	.	G	.	.	LowGQX	END=98994553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	98994554	.	G	.	.	LowGQX	END=98994555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	98994556	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr2	98994557	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr2	98994558	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr2	98994559	.	T	.	5.79	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.01:60:0
chr2	98994560	.	G	.	.	LowGQX	END=98994562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	98994563	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr2	98994564	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:9:60
chr2	98994565	.	G	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr2	98994566	.	A	.	.	LowGQX	END=98994567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	98994568	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr2	98994569	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	98994570	.	G	.	.	LowGQX	END=98994571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	98994572	.	C	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr2	98994573	.	A	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr2	98994574	.	G	.	.	LowGQX	END=98994576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	98994577	.	G	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	98994578	.	T	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr2	98994579	.	G	.	39.02	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:9.03:60:9
chr2	98994580	.	G	.	.	LowGQX	END=98994584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	98994585	.	C	.	.	LowGQX	END=98994586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	98994587	.	T	.	.	LowGQX	END=98994596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	98994597	.	T	.	33	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:3.01:60:3
chr2	98994598	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr2	98994599	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:12:60
chr2	98994600	.	A	.	36.01	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:6.02:60:6
chr2	98994601	.	C	.	4.58	LowGQX	DP=4;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:3:4:0.01:60:0
chr2	98994602	.	A	.	.	LowGQX	END=98994603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	98994604	.	A	.	.	LowGQX	END=98994608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	98994609	.	T	.	.	LowGQX	END=98994610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	98994611	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr2	98994612	.	G	.	.	LowGQX	END=98994613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	98994614	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	98994615	.	G	.	.	LowGQX	END=98994632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	98994633	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:3:3.01:60:3
chr2	98994634	.	C	.	.	LowGQX	END=98994649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	98994650	.	A	.	.	LowGQX	END=98994682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98994683	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	98994684	.	A	.	.	LowGQX	END=98994685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	98996587	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:39:60
chr2	98996588	.	G	.	.	PASS	END=98996597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	98996598	.	T	.	.	PASS	END=98996600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr2	98996601	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:31:33:60
chr2	98996602	.	C	.	.	PASS	END=98996612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr2	98996613	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:48:60
chr2	98996614	.	C	.	.	PASS	END=98996628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	98996629	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:69:60
chr2	98996630	.	C	.	.	PASS	END=98996656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:93:60
chr2	98996657	.	T	.	.	PASS	END=98996690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	98996691	.	A	.	.	PASS	END=98996730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	98996731	.	T	.	.	PASS	END=98996799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	98996800	.	A	.	.	PASS	END=98996826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	98996827	.	G	.	.	PASS	END=98996862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	98996863	.	C	.	.	PASS	END=98996868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:87:60
chr2	98999798	.	C	.	.	PASS	END=98999850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr2	98999851	.	C	.	.	PASS	END=98999915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:87:60
chr2	98999916	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:54:60
chr2	98999917	.	A	.	.	PASS	END=98999922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	98999923	.	A	.	.	PASS	END=98999932;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:60:60
chr2	98999933	.	T	.	.	PASS	END=98999945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:60
chr2	98999946	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:45:60
chr2	98999947	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:24:60:60
chr2	98999948	.	C	.	.	PASS	END=98999955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:45:60
chr2	99006070	.	A	.	.	PASS	END=99006101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	99006102	.	T	.	.	PASS	END=99006180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	99006181	.	C	.	.	PASS	END=99006227;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	99006228	.	T	.	.	PASS	END=99006246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	99006247	.	A	.	.	PASS	END=99006256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:60
chr2	99006257	.	G	.	.	PASS	END=99006258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:99:60
chr2	99006259	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:35:63:60
chr2	99006260	.	G	.	.	PASS	END=99006268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:78:60
chr2	99006269	.	A	.	.	PASS	END=99006288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	99008276	.	A	.	.	PASS	END=99008297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:93:60
chr2	99008298	.	G	.	.	PASS	END=99008355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	99008356	.	A	.	.	PASS	END=99008378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	99008379	.	G	.	.	PASS	END=99008461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	99008462	.	A	.	.	PASS	END=99008484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	99012256	.	C	.	.	PASS	END=99012266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	99012267	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:22:42:60
chr2	99012268	.	G	.	.	PASS	END=99012286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	99012287	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:25:42:60
chr2	99012288	.	C	.	.	PASS	END=99012312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	99012313	.	T	.	.	PASS	END=99012315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:75:60
chr2	99012316	.	A	.	.	PASS	END=99012321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:63:60
chr2	99012322	.	G	.	.	PASS	END=99012342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:87:60
chr2	99012343	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:74:60
chr2	99012344	.	C	.	.	PASS	END=99012376;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr2	99012377	.	G	.	.	PASS	END=99012390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	99012391	.	T	.	.	PASS	END=99012405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	99012406	.	C	.	.	PASS	END=99012427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	99012428	.	G	.	.	PASS	END=99012454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	99012455	.	G	.	.	PASS	END=99012506;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	99012507	.	G	.	.	PASS	END=99012640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:60
chr2	99012641	.	C	.	.	PASS	END=99012671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr2	99012672	.	C	.	.	PASS	END=99012707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	99012708	.	T	.	.	PASS	END=99012740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	99012741	.	C	.	.	PASS	END=99012842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	99012843	.	T	.	.	PASS	END=99012869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	99012870	.	T	.	.	PASS	END=99012898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	99012899	.	G	.	.	PASS	END=99012920;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr2	99012921	.	A	.	.	PASS	END=99012974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:270:99:60
chr2	99012975	.	A	.	.	PASS	END=99013060;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:278:99:60
chr2	99013061	.	G	.	.	PASS	END=99013186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr2	99013187	.	G	.	.	PASS	END=99013337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr2	99013338	.	C	.	.	PASS	END=99013479;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr2	99013480	.	T	.	.	PASS	END=99013507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr2	99013508	.	C	.	.	PASS	END=99013547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	99013548	.	A	.	.	PASS	END=99013579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	99013580	.	T	.	.	PASS	END=99013606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	99013607	.	G	.	.	PASS	END=99013649;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:87:60
chr2	99013650	.	G	.	.	PASS	END=99013685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:60
chr2	99013686	.	G	.	.	PASS	END=99013702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr2	99013703	.	G	.	.	PASS	END=99013709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	99013710	.	C	.	.	PASS	END=99013714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	99013715	.	G	.	.	PASS	END=99013728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr2	99013729	.	T	.	.	PASS	END=99013740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:60:60
chr2	99013741	.	T	.	.	PASS	END=99013749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:57:60
chr2	99013750	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:36:60
chr2	99013751	.	C	.	.	PASS	END=99013757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	99013758	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:12:60
chr2	99013759	.	A	.	.	PASS	END=99013762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr2	99013763	.	T	.	.	PASS	END=99013769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:30:60
chr2	99136475	.	A	.	.	PASS	END=99136563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:266:99:60
chr2	99136564	.	A	.	.	PASS	END=99136608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:99:60
chr2	99136609	.	C	.	.	PASS	END=99136633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	99136634	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:152:99:60
chr2	99137059	.	G	.	.	PASS	END=99137063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:45:60
chr2	99137064	.	G	.	.	PASS	END=99137073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr2	99137074	.	G	.	.	PASS	END=99137125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	99137126	.	T	.	.	PASS	END=99137136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	99137137	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:48:60
chr2	99137138	.	T	.	.	PASS	END=99137150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr2	99137151	.	A	.	.	PASS	END=99137155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:72:60
chr2	99137156	.	T	.	.	PASS	END=99137166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:90:60
chr2	99137167	.	G	.	.	PASS	END=99137208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:98:60
chr2	99137209	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:54:70:60
chr2	99137210	.	T	.	.	PASS	END=99137221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	99149839	.	G	.	.	PASS	END=99149854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	99149855	.	A	.	.	PASS	END=99149943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	99149944	.	A	.	.	PASS	END=99149945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	99149946	.	G	A	1107.10	PASS	BaseQRankSum=1.704;DP=84;Dels=0.00;FS=6.505;HRun=0;HaplotypeScore=7.6281;MQ=60;MQ0=0;MQRankSum=0.142;QD=13.18;ReadPosRankSum=-0.345;SB=-607.53	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:36,47:84:99:1137,0,860:60:99:0.566
chr2	99149947	.	G	.	.	PASS	END=99149958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	99152160	.	C	.	.	PASS	END=99152166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	99152167	.	C	.	.	PASS	END=99152201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	99152202	.	A	.	.	PASS	END=99152242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	99152243	.	C	.	.	PASS	END=99152317;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	99152318	.	T	.	.	PASS	END=99152319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	99152591	.	G	.	.	PASS	END=99152672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	99152673	.	T	.	.	PASS	END=99152701;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	99154292	.	A	.	.	PASS	END=99154320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:158:99:60
chr2	99154321	.	C	.	.	PASS	END=99154432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr2	99154433	.	G	.	.	PASS	END=99154437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	99155309	.	T	.	.	PASS	END=99155337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	99155338	.	C	.	.	PASS	END=99155444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr2	99155990	.	G	.	.	PASS	END=99156043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	99156044	.	C	.	.	PASS	END=99156082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	99156083	.	T	.	.	PASS	END=99156149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:79:60
chr2	99160339	.	G	.	.	PASS	END=99160358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	99160359	.	C	.	.	PASS	END=99160435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	99160436	.	C	.	.	PASS	END=99160470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	99162431	.	G	.	.	PASS	END=99162465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	99162466	.	T	.	.	PASS	END=99162538;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	99162539	.	A	.	.	PASS	END=99162553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	99163048	.	G	.	.	PASS	END=99163098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	99163099	.	G	.	.	PASS	END=99163172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	99165327	.	A	.	.	PASS	END=99165435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	99165436	.	A	.	.	PASS	END=99165457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:60
chr2	99165458	.	T	.	.	PASS	END=99165477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr2	99165478	.	T	.	.	PASS	END=99165484;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr2	99169030	.	A	.	.	PASS	END=99169063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:69:60
chr2	99169064	.	G	.	.	PASS	END=99169085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	99169086	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:60:60
chr2	99169087	.	C	.	.	PASS	END=99169109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr2	99169110	.	C	.	.	PASS	END=99169129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	99169198	.	T	.	.	PASS	END=99169238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	99169239	.	T	.	.	PASS	END=99169282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr2	99169283	.	C	.	.	PASS	END=99169426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr2	99169427	.	G	.	.	PASS	END=99169432;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr2	99170733	.	G	.	.	PASS	END=99170798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr2	99170799	.	T	.	.	PASS	END=99170918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:285:99:60
chr2	99170919	.	T	.	.	PASS	END=99170945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr2	99170946	.	G	.	.	PASS	END=99170952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr2	99172015	.	G	.	.	PASS	END=99172042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	99172043	.	A	.	.	PASS	END=99172095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	99172096	.	G	.	.	PASS	END=99172208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr2	99172209	.	T	.	.	PASS	END=99172245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	99172246	.	T	.	.	PASS	END=99172271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:60
chr2	99175862	.	A	.	.	PASS	END=99175876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	99175877	.	A	.	.	PASS	END=99175937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	99175938	.	C	.	.	PASS	END=99175961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	99179927	.	G	.	.	PASS	END=99179963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	99179964	.	C	.	.	PASS	END=99180076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr2	99180077	.	C	.	.	PASS	END=99180106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	99181042	.	C	.	.	PASS	END=99181048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:72:60
chr2	99181049	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:96:60
chr2	99181050	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:45:51:60
chr2	99181051	.	A	.	.	PASS	END=99181066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:84:60
chr2	99181067	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:99:60
chr2	99181068	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:75:60
chr2	99181069	.	T	.	.	PASS	END=99181081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:93:60
chr2	99181082	.	C	.	.	PASS	END=99181106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	99181107	.	C	.	.	PASS	END=99181183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	99181184	.	A	.	.	PASS	END=99181226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	99182102	.	G	.	.	PASS	END=99182207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	99182208	.	T	.	.	PASS	END=99182261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	99182471	.	C	.	.	PASS	END=99182513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	99182514	.	C	.	.	PASS	END=99182599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	99182600	.	G	.	.	PASS	END=99182632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	99185033	.	G	.	.	PASS	END=99185072;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	99185073	.	G	.	.	PASS	END=99185095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr2	99185096	.	A	.	.	PASS	END=99185152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr2	99189277	.	G	.	.	PASS	END=99189393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	99189394	.	C	.	.	PASS	END=99189403;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	99193451	.	G	.	.	PASS	END=99193498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:252:99:60
chr2	99193499	.	T	.	.	PASS	END=99193584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:261:99:60
chr2	99193585	.	A	.	.	PASS	END=99193606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr2	99198038	.	G	.	.	PASS	END=99198043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	99198044	.	G	.	.	PASS	END=99198063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	99198064	.	C	.	.	PASS	END=99198139;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:60
chr2	99198140	.	T	.	.	PASS	END=99198193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	99198194	.	T	.	.	PASS	END=99198219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	99203938	.	G	.	.	PASS	END=99203976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	99203977	.	G	.	.	PASS	END=99204025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:60
chr2	99204026	.	G	.	.	PASS	END=99204108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr2	99204109	.	T	.	.	PASS	END=99204117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:60
chr2	99217156	.	T	.	.	PASS	END=99217184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:60
chr2	99217185	.	T	.	.	PASS	END=99217307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	99218979	.	G	.	.	LowGQX	END=99218995;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99218996	.	C	.	.	LowGQX	END=99219061	GT	./.
chr2	99219062	.	A	.	.	LowGQX	END=99219066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:44
chr2	99219067	.	A	.	.	LowGQX	.	GT	./.
chr2	99219068	.	C	.	.	LowGQX	END=99219128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:44
chr2	99219129	.	G	.	.	LowGQX	END=99219131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99219132	.	T	.	.	LowGQX	END=99219133	GT	./.
chr2	99219134	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99219135	.	C	.	.	LowGQX	END=99219136	GT	./.
chr2	99219137	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99219138	.	A	.	.	LowGQX	.	GT	./.
chr2	99220520	.	T	.	.	PASS	END=99220612;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:96:60
chr2	99220613	.	G	.	.	PASS	END=99220628;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	99220629	.	A	.	.	PASS	END=99220679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:86:60
chr2	99220680	.	A	.	.	PASS	END=99220705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:60
chr2	99224719	.	G	.	.	PASS	END=99224773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	99224774	.	A	.	.	PASS	END=99224863;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	99224864	.	G	.	.	PASS	END=99224891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	99224892	.	G	.	.	PASS	END=99224919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	99226171	.	A	.	.	LowGQX	END=99226217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99226218	.	G	.	.	LowGQX	.	GT	./.
chr2	99226219	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99226220	.	A	.	.	LowGQX	END=99226327	GT	./.
chr2	99226328	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99226329	.	G	.	.	LowGQX	END=99226332	GT	./.
chr2	99226333	.	G	.	.	LowGQX	END=99226334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99226335	.	T	.	.	LowGQX	.	GT	./.
chr2	99226336	.	T	.	.	LowGQX	END=99226342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99226343	.	T	.	.	LowGQX	END=99226346	GT	./.
chr2	99226347	.	G	.	.	LowGQX	END=99226359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99226360	.	T	.	.	LowGQX	.	GT	./.
chr2	99226361	.	G	.	.	LowGQX	END=99226364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99226365	.	T	.	.	LowGQX	.	GT	./.
chr2	99226366	.	T	.	.	LowGQX	END=99226385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99226386	.	A	.	.	LowGQX	.	GT	./.
chr2	99226387	.	C	.	.	LowGQX	END=99226388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99226389	.	T	.	.	LowGQX	.	GT	./.
chr2	99226390	.	G	.	.	LowGQX	END=99226397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99226398	.	C	.	.	LowGQX	END=99226399	GT	./.
chr2	99226400	.	C	.	.	LowGQX	END=99226409;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99226410	.	T	.	.	LowGQX	.	GT	./.
chr2	99226411	.	T	.	.	LowGQX	END=99226426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99226427	.	T	.	.	LowGQX	.	GT	./.
chr2	99226428	.	A	.	.	LowGQX	END=99226430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99226431	.	G	.	.	LowGQX	.	GT	./.
chr2	99226432	.	A	.	.	LowGQX	END=99226437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99226438	.	G	.	.	LowGQX	.	GT	./.
chr2	99226439	.	A	.	.	LowGQX	END=99226453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99226454	.	G	.	.	LowGQX	.	GT	./.
chr2	99226455	.	C	.	.	LowGQX	END=99226477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99226478	.	G	.	.	LowGQX	END=99226504	GT	./.
chr2	99227236	.	A	.	.	LowGQX	END=99227360	GT	./.
chr2	99232668	.	A	.	.	LowGQX	END=99232811	GT	./.
chr2	99232893	.	A	.	.	LowGQX	END=99232998	GT	./.
chr2	99234609	.	T	.	.	LowGQX	END=99234798	GT	./.
chr2	99237881	.	A	.	.	LowGQX	END=99237980	GT	./.
chr2	99241937	.	G	.	.	LowGQX	END=99241940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99241941	.	T	.	.	LowGQX	END=99241943	GT	./.
chr2	99241944	.	T	.	.	LowGQX	END=99241945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99241946	.	A	.	.	LowGQX	.	GT	./.
chr2	99241947	.	A	.	.	LowGQX	END=99241964;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99241965	.	A	.	.	LowGQX	.	GT	./.
chr2	99241966	.	T	.	.	LowGQX	END=99241968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99241969	.	A	.	.	LowGQX	.	GT	./.
chr2	99241970	.	T	.	.	LowGQX	END=99241971;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99241972	.	C	.	.	LowGQX	.	GT	./.
chr2	99241973	.	T	.	.	LowGQX	END=99241974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99241975	.	A	.	.	LowGQX	END=99241976	GT	./.
chr2	99241977	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99241978	.	T	.	.	LowGQX	.	GT	./.
chr2	99241979	.	A	.	.	LowGQX	END=99241982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99241983	.	T	.	.	LowGQX	.	GT	./.
chr2	99241984	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99241985	.	A	.	.	LowGQX	.	GT	./.
chr2	99241986	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99241987	.	T	.	.	LowGQX	.	GT	./.
chr2	99241988	.	T	.	.	LowGQX	END=99241990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99241991	.	C	.	.	LowGQX	END=99241993	GT	./.
chr2	99241994	.	A	.	.	LowGQX	END=99241998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99241999	.	C	.	.	LowGQX	END=99242002	GT	./.
chr2	99242003	.	A	.	.	LowGQX	END=99242009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242010	.	G	.	.	LowGQX	.	GT	./.
chr2	99242011	.	T	.	.	LowGQX	END=99242012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242013	.	T	.	.	LowGQX	.	GT	./.
chr2	99242014	.	T	.	.	LowGQX	END=99242016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242017	.	T	.	.	LowGQX	END=99242021	GT	./.
chr2	99242022	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242023	.	A	.	.	LowGQX	.	GT	./.
chr2	99242024	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242025	.	A	.	.	LowGQX	END=99242027	GT	./.
chr2	99242028	.	A	.	.	LowGQX	END=99242031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242032	.	G	.	.	LowGQX	END=99242033	GT	./.
chr2	99242034	.	T	.	.	LowGQX	END=99242036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242037	.	T	.	.	LowGQX	END=99242038	GT	./.
chr2	99242039	.	G	.	.	LowGQX	END=99242041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242042	.	T	.	.	LowGQX	END=99242043	GT	./.
chr2	99242044	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242045	.	T	.	.	LowGQX	END=99242046	GT	./.
chr2	99242047	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242048	.	A	.	.	LowGQX	.	GT	./.
chr2	99242049	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242050	.	A	.	.	LowGQX	END=99242092	GT	./.
chr2	99242184	.	A	.	.	LowGQX	END=99242191	GT	./.
chr2	99242192	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242193	.	A	.	.	LowGQX	.	GT	./.
chr2	99242194	.	G	.	.	LowGQX	END=99242195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242196	.	A	.	.	LowGQX	.	GT	./.
chr2	99242197	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242198	.	G	.	.	LowGQX	END=99242199	GT	./.
chr2	99242200	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242201	.	C	.	.	LowGQX	.	GT	./.
chr2	99242202	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242203	.	A	.	.	LowGQX	.	GT	./.
chr2	99242204	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242205	.	A	.	.	LowGQX	.	GT	./.
chr2	99242206	.	C	.	.	LowGQX	END=99242215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242216	.	C	.	.	LowGQX	.	GT	./.
chr2	99242217	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242218	.	G	.	.	LowGQX	.	GT	./.
chr2	99242219	.	A	.	.	LowGQX	END=99242222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242223	.	A	.	.	LowGQX	END=99242224	GT	./.
chr2	99242225	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242226	.	G	.	.	LowGQX	END=99242227	GT	./.
chr2	99242228	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242229	.	A	.	.	LowGQX	.	GT	./.
chr2	99242230	.	G	.	.	LowGQX	END=99242235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242236	.	A	.	.	LowGQX	END=99242237	GT	./.
chr2	99242238	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242239	.	C	.	.	LowGQX	.	GT	./.
chr2	99242240	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242241	.	G	.	.	LowGQX	.	GT	./.
chr2	99242242	.	A	.	.	LowGQX	END=99242244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242245	.	T	.	.	LowGQX	.	GT	./.
chr2	99242246	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242247	.	G	.	.	LowGQX	.	GT	./.
chr2	99242248	.	G	.	.	LowGQX	END=99242249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242250	.	T	.	.	LowGQX	END=99242251	GT	./.
chr2	99242252	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242253	.	A	.	.	LowGQX	.	GT	./.
chr2	99242254	.	G	.	.	LowGQX	END=99242256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242257	.	T	.	.	LowGQX	END=99242260	GT	./.
chr2	99242261	.	A	.	.	LowGQX	END=99242265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242266	.	C	.	.	LowGQX	.	GT	./.
chr2	99242267	.	C	.	.	LowGQX	END=99242275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242276	.	T	.	.	LowGQX	END=99242277	GT	./.
chr2	99242278	.	C	.	.	LowGQX	END=99242279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242280	.	A	.	.	LowGQX	END=99242282	GT	./.
chr2	99242283	.	C	.	.	LowGQX	END=99242284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242285	.	A	.	.	LowGQX	.	GT	./.
chr2	99242286	.	T	.	.	LowGQX	END=99242292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242293	.	A	.	.	LowGQX	.	GT	./.
chr2	99242294	.	T	.	.	LowGQX	END=99242295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242296	.	T	.	.	LowGQX	.	GT	./.
chr2	99242297	.	T	.	.	LowGQX	END=99242299;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99242300	.	T	.	.	LowGQX	.	GT	./.
chr2	99251613	.	T	.	.	LowGQX	END=99251768	GT	./.
chr2	99252970	.	G	.	.	LowGQX	END=99253069	GT	./.
chr2	99256269	.	A	.	.	LowGQX	END=99256466	GT	./.
chr2	99256582	.	A	.	.	LowGQX	END=99256693	GT	./.
chr2	99260384	.	A	.	.	LowGQX	END=99260518	GT	./.
chr2	99261839	.	C	.	.	LowGQX	END=99262007	GT	./.
chr2	99271896	.	A	.	.	LowGQX	END=99271995	GT	./.
chr2	99272761	.	G	.	.	LowGQX	END=99272833	GT	./.
chr2	99272834	.	C	.	.	LowGQX	END=99272921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99272922	.	A	.	.	LowGQX	.	GT	./.
chr2	99272923	.	G	.	.	LowGQX	END=99272930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99274599	.	G	.	.	LowGQX	END=99274754	GT	./.
chr2	99279507	.	A	.	.	LowGQX	END=99279525	GT	./.
chr2	99279526	.	C	.	.	LowGQX	END=99279541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99279542	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	99279543	.	T	.	.	LowGQX	END=99279644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99279763	.	A	.	.	LowGQX	END=99279862	GT	./.
chr2	99291456	.	A	.	.	LowGQX	END=99291640	GT	./.
chr2	99294765	.	A	.	.	LowGQX	END=99294936	GT	./.
chr2	99342699	.	T	.	.	LowGQX	END=99342798	GT	./.
chr2	99410993	.	A	.	.	LowGQX	END=99411136	GT	./.
chr2	99412581	.	A	.	.	LowGQX	END=99412729	GT	./.
chr2	99413811	.	A	.	.	LowGQX	END=99413830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	99413831	.	C	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr2	99413832	.	T	.	.	LowGQX	END=99413918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:6:60
chr2	99413919	.	T	.	39.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:9.03:60:9
chr2	99413920	.	T	.	.	LowGQX	END=99413950;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	99413951	.	A	.	.	LowGQX	END=99413962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	99413963	.	A	.	.	LowGQX	END=99414000	GT	./.
chr2	99414001	.	C	.	.	LowGQX	END=99414002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99438248	.	T	.	.	LowGQX	END=99440067	GT	./.
chr2	99443436	.	A	.	.	LowGQX	END=99443461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	99443462	.	C	.	.	LowGQX	.	GT	./.
chr2	99443463	.	G	.	.	LowGQX	END=99443478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	99443479	.	G	.	.	LowGQX	.	GT	./.
chr2	99443480	.	C	.	.	LowGQX	END=99443491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	99443492	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	99443493	.	T	.	.	LowGQX	END=99443500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	99443501	.	A	.	.	LowGQX	END=99443634	GT	./.
chr2	99448779	.	T	.	.	LowGQX	END=99448977	GT	./.
chr2	99449253	.	A	.	.	LowGQX	END=99449280	GT	./.
chr2	99449281	.	T	.	.	LowGQX	END=99449292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99449293	.	A	.	.	LowGQX	.	GT	./.
chr2	99449294	.	C	.	.	LowGQX	END=99449462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99454580	.	A	.	.	LowGQX	END=99454752	GT	./.
chr2	99463183	.	C	.	.	LowGQX	END=99463282	GT	./.
chr2	99485528	.	T	.	.	LowGQX	END=99485627	GT	./.
chr2	99513806	.	A	.	.	LowGQX	END=99513905	GT	./.
chr2	99614623	.	T	.	.	LowGQX	END=99614722	GT	./.
chr2	99634661	.	A	.	.	LowGQX	END=99634814	GT	./.
chr2	99634997	.	A	.	.	LowGQX	END=99635067	GT	./.
chr2	99635068	.	T	.	.	LowGQX	END=99635105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99636741	.	A	.	.	LowGQX	END=99636897	GT	./.
chr2	99636898	.	C	.	.	LowGQX	END=99636947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	99651691	.	A	.	.	LowGQX	END=99651904	GT	./.
chr2	99681400	.	A	.	.	LowGQX	END=99681589	GT	./.
chr2	99685349	.	A	.	.	LowGQX	END=99685508	GT	./.
chr2	99688167	.	A	.	.	LowGQX	END=99688191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99688192	.	C	.	.	LowGQX	.	GT	./.
chr2	99688193	.	A	.	.	LowGQX	END=99688194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99688195	.	A	.	.	LowGQX	END=99688339	GT	./.
chr2	99689459	.	A	.	.	LowGQX	END=99689461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99689462	.	T	.	.	LowGQX	.	GT	./.
chr2	99689463	.	G	.	.	LowGQX	END=99689474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99689475	.	A	.	.	LowGQX	.	GT	./.
chr2	99689476	.	T	.	.	LowGQX	END=99689510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99689511	.	T	.	.	LowGQX	.	GT	./.
chr2	99689512	.	T	.	.	LowGQX	END=99689516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99689517	.	A	.	.	LowGQX	END=99689558	GT	./.
chr2	99695090	.	G	.	.	LowGQX	END=99695278	GT	./.
chr2	99697693	.	T	.	.	LowGQX	END=99697862	GT	./.
chr2	99720428	.	A	.	.	LowGQX	END=99720519	GT	./.
chr2	99720520	.	G	.	.	LowGQX	END=99720583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99721811	.	T	.	.	LowGQX	END=99721910	GT	./.
chr2	99721988	.	A	.	.	LowGQX	END=99722000	GT	./.
chr2	99722001	.	C	.	.	LowGQX	END=99722162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99725294	.	A	.	.	LowGQX	END=99725456	GT	./.
chr2	99725828	.	T	.	.	LowGQX	END=99725927	GT	./.
chr2	99743481	.	T	.	.	LowGQX	END=99743639	GT	./.
chr2	99757517	.	C	.	.	LowGQX	END=99757616	GT	./.
chr2	99763894	.	A	.	.	LowGQX	END=99763993	GT	./.
chr2	99766944	.	A	.	.	LowGQX	END=99767299	GT	./.
chr2	99771436	.	T	.	.	LowGQX	END=99771535	GT	./.
chr2	99771927	.	T	.	.	LowGQX	END=99772026	GT	./.
chr2	99778419	.	G	.	.	LowGQX	END=99779544	GT	./.
chr2	99785836	.	C	.	.	LowGQX	END=99785935	GT	./.
chr2	99785994	.	T	.	.	LowGQX	END=99786093	GT	./.
chr2	99786998	.	A	.	.	LowGQX	END=99787009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787010	.	G	.	.	LowGQX	.	GT	./.
chr2	99787011	.	G	.	.	LowGQX	END=99787096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787097	.	G	.	.	LowGQX	.	GT	./.
chr2	99787098	.	C	.	.	LowGQX	END=99787117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	99787800	.	A	.	.	LowGQX	END=99787801;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787802	.	C	.	.	LowGQX	.	GT	./.
chr2	99787803	.	T	.	.	LowGQX	END=99787804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787805	.	C	.	.	LowGQX	.	GT	./.
chr2	99787806	.	T	.	.	LowGQX	END=99787807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787808	.	C	.	.	LowGQX	.	GT	./.
chr2	99787809	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787810	.	T	.	.	LowGQX	.	GT	./.
chr2	99787811	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787812	.	C	.	.	LowGQX	.	GT	./.
chr2	99787813	.	A	.	.	LowGQX	END=99787814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787815	.	A	.	.	LowGQX	END=99787816	GT	./.
chr2	99787817	.	A	.	.	LowGQX	END=99787825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787826	.	G	.	.	LowGQX	END=99787827	GT	./.
chr2	99787828	.	T	.	.	LowGQX	END=99787834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787835	.	T	.	.	LowGQX	.	GT	./.
chr2	99787836	.	T	.	.	LowGQX	END=99787837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787838	.	T	.	.	LowGQX	.	GT	./.
chr2	99787839	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787840	.	A	.	.	LowGQX	.	GT	./.
chr2	99787841	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787842	.	T	.	.	LowGQX	END=99787843	GT	./.
chr2	99787844	.	T	.	.	LowGQX	END=99787845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787846	.	C	.	.	LowGQX	.	GT	./.
chr2	99787847	.	A	.	.	LowGQX	END=99787848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787849	.	G	.	.	LowGQX	END=99787852	GT	./.
chr2	99787853	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787854	.	C	.	.	LowGQX	.	GT	./.
chr2	99787855	.	T	.	.	LowGQX	END=99787861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787862	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=2;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	99787863	.	C	.	.	LowGQX	.	GT	./.
chr2	99787864	.	A	.	.	LowGQX	END=99787866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787867	.	T	.	.	LowGQX	.	GT	./.
chr2	99787868	.	C	.	.	LowGQX	END=99787876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787877	.	G	.	.	LowGQX	END=99787878	GT	./.
chr2	99787879	.	A	.	.	LowGQX	END=99787892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99787893	.	C	.	.	LowGQX	END=99787899	GT	./.
chr2	99787971	.	A	.	.	LowGQX	END=99788111	GT	./.
chr2	99789885	.	T	.	.	LowGQX	END=99789916	GT	./.
chr2	99789917	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99789918	.	T	.	.	LowGQX	.	GT	./.
chr2	99789919	.	T	.	.	LowGQX	END=99789921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99789922	.	T	.	.	LowGQX	.	GT	./.
chr2	99789923	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99789924	.	C	.	.	LowGQX	.	GT	./.
chr2	99789925	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99789926	.	C	.	.	LowGQX	.	GT	./.
chr2	99789927	.	A	.	.	LowGQX	END=99789930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99789931	.	A	.	.	LowGQX	.	GT	./.
chr2	99789932	.	A	.	.	LowGQX	END=99789935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99789936	.	T	.	.	LowGQX	.	GT	./.
chr2	99789937	.	G	.	.	LowGQX	END=99789943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99789944	.	A	.	.	LowGQX	END=99789945	GT	./.
chr2	99789946	.	C	.	.	LowGQX	END=99789953;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99789954	.	T	.	.	LowGQX	.	GT	./.
chr2	99789955	.	T	.	.	LowGQX	END=99789958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99789959	.	T	.	.	LowGQX	.	GT	./.
chr2	99789960	.	T	.	.	LowGQX	END=99789961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99789962	.	G	.	.	LowGQX	.	GT	./.
chr2	99789963	.	C	.	.	LowGQX	END=99789967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99789968	.	T	.	.	LowGQX	.	GT	./.
chr2	99789969	.	T	.	.	LowGQX	END=99789974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99789975	.	T	.	.	LowGQX	.	GT	./.
chr2	99789976	.	T	.	.	LowGQX	END=99789983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99789984	.	T	.	.	LowGQX	.	GT	./.
chr2	99790306	.	G	.	.	LowGQX	END=99790429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99790430	.	T	.	.	LowGQX	END=99790481	GT	./.
chr2	99797286	.	T	.	.	LowGQX	END=99797446	GT	./.
chr2	99802194	.	G	.	.	LowGQX	END=99802293	GT	./.
chr2	99802630	.	C	.	.	LowGQX	END=99802729	GT	./.
chr2	99804631	.	A	.	.	LowGQX	END=99804665	GT	./.
chr2	99804666	.	T	.	.	LowGQX	END=99804690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99804691	.	A	.	.	LowGQX	.	GT	./.
chr2	99804692	.	A	.	.	LowGQX	END=99804730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99811182	.	A	.	.	LowGQX	END=99811264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	99811265	.	A	.	.	LowGQX	END=99811387	GT	./.
chr2	99811577	.	A	.	.	LowGQX	END=99811637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99811638	.	T	.	.	LowGQX	.	GT	./.
chr2	99811639	.	A	.	.	LowGQX	END=99811671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99811672	.	C	.	.	LowGQX	END=99811695	GT	./.
chr2	99812034	.	A	.	.	LowGQX	END=99812061	GT	./.
chr2	99812062	.	G	.	.	LowGQX	END=99812069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99812070	.	G	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	99812071	.	C	.	.	LowGQX	END=99812079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99812080	.	A	.	.	LowGQX	.	GT	./.
chr2	99812081	.	C	.	.	LowGQX	END=99812088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99812089	.	A	.	.	LowGQX	.	GT	./.
chr2	99812090	.	C	.	.	LowGQX	END=99812114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99812115	.	T	.	.	LowGQX	.	GT	./.
chr2	99812116	.	T	.	.	LowGQX	END=99812223;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99858825	.	G	.	.	LowGQX	END=99858947	GT	./.
chr2	99859878	.	G	.	.	LowGQX	END=99859977	GT	./.
chr2	99860432	.	T	.	.	LowGQX	END=99860541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99860542	.	T	.	.	LowGQX	END=99860551	GT	./.
chr2	99860552	.	G	.	.	LowGQX	END=99860577;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99860578	.	G	.	.	LowGQX	.	GT	./.
chr2	99860579	.	G	.	.	LowGQX	END=99860602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	99861723	.	A	.	.	LowGQX	END=99861923	GT	./.
chr2	99863141	.	A	.	.	LowGQX	END=99863285	GT	./.
chr2	99870589	.	A	.	.	LowGQX	END=99870752	GT	./.
chr2	99900854	.	T	.	.	LowGQX	END=99900976	GT	./.
chr2	99901149	.	A	.	.	LowGQX	END=99901150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99901151	.	C	.	.	LowGQX	.	GT	./.
chr2	99901152	.	T	.	.	LowGQX	END=99901155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99901156	.	A	.	.	LowGQX	END=99901158	GT	./.
chr2	99901159	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99901160	.	A	.	.	LowGQX	.	GT	./.
chr2	99901161	.	C	.	.	LowGQX	END=99901163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99901164	.	G	.	.	LowGQX	.	GT	./.
chr2	99901165	.	T	.	.	LowGQX	END=99901168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99901169	.	G	.	.	LowGQX	.	GT	./.
chr2	99901170	.	G	.	.	LowGQX	END=99901173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99901174	.	C	.	.	LowGQX	.	GT	./.
chr2	99901175	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99901176	.	G	.	.	LowGQX	.	GT	./.
chr2	99901177	.	G	.	.	LowGQX	END=99901181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99901182	.	A	.	.	LowGQX	END=99901183	GT	./.
chr2	99901184	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99901185	.	C	.	.	LowGQX	END=99901282	GT	./.
chr2	99901283	.	C	.	.	LowGQX	END=99901285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99907698	.	A	.	.	LowGQX	END=99907886	GT	./.
chr2	99908997	.	A	.	.	LowGQX	END=99909101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99909102	.	G	.	.	LowGQX	END=99909105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:9:60
chr2	99912063	.	G	.	.	LowGQX	END=99912162	GT	./.
chr2	99923192	.	G	.	.	LowGQX	END=99923291	GT	./.
chr2	99936093	.	A	.	.	LowGQX	END=99936264	GT	./.
chr2	99938413	.	G	.	.	LowGQX	END=99938674	GT	./.
chr2	99939044	.	T	.	.	LowGQX	END=99939143	GT	./.
chr2	99943996	.	A	.	.	LowGQX	END=99944118	GT	./.
chr2	99949452	.	T	.	.	LowGQX	END=99949705	GT	./.
chr2	99953926	.	A	.	.	LowGQX	END=99953948;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	99953949	.	A	.	.	LowGQX	.	GT	./.
chr2	99953950	.	G	.	.	LowGQX	END=99954003;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	99954004	.	G	.	36	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.01:60:6
chr2	99954005	.	C	.	.	LowGQX	END=99954085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99954739	.	G	.	.	LowGQX	END=99954838	GT	./.
chr2	99976697	.	A	.	.	LowGQX	END=99976826	GT	./.
chr2	99976921	.	T	.	.	LowGQX	END=99977020	GT	./.
chr2	99977609	.	A	.	.	LowGQX	END=99977914	GT	./.
chr2	99977915	.	G	.	.	LowGQX	END=99977959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99977960	.	G	.	.	LowGQX	.	GT	./.
chr2	99977961	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99977962	.	C	.	.	LowGQX	END=99977963	GT	./.
chr2	99977964	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99977965	.	A	.	.	LowGQX	.	GT	./.
chr2	99977966	.	A	.	.	LowGQX	END=99977967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99977968	.	A	.	.	LowGQX	.	GT	./.
chr2	99977969	.	A	.	.	LowGQX	END=99977994;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99977995	.	A	.	.	LowGQX	.	GT	./.
chr2	99977996	.	A	.	.	LowGQX	END=99978002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978003	.	A	.	.	LowGQX	.	GT	./.
chr2	99978004	.	A	.	.	LowGQX	END=99978010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978011	.	A	.	.	LowGQX	.	GT	./.
chr2	99978012	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978013	.	G	.	.	LowGQX	END=99978014	GT	./.
chr2	99978015	.	A	.	.	LowGQX	END=99978026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978027	.	C	.	.	LowGQX	.	GT	./.
chr2	99978028	.	T	.	.	LowGQX	END=99978029;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978030	.	C	.	.	LowGQX	.	GT	./.
chr2	99978031	.	T	.	.	LowGQX	END=99978034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978035	.	A	.	.	LowGQX	.	GT	./.
chr2	99978036	.	A	.	.	LowGQX	END=99978058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978059	.	A	.	.	LowGQX	END=99978060	GT	./.
chr2	99978061	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978062	.	C	.	.	LowGQX	END=99978063	GT	./.
chr2	99978064	.	G	.	.	LowGQX	END=99978065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978066	.	A	.	.	LowGQX	END=99978133	GT	./.
chr2	99978134	.	A	.	.	LowGQX	END=99978136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978137	.	A	.	.	LowGQX	.	GT	./.
chr2	99978138	.	G	.	.	LowGQX	END=99978140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978141	.	A	.	.	LowGQX	.	GT	./.
chr2	99978142	.	G	.	.	LowGQX	END=99978144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978145	.	A	.	.	LowGQX	.	GT	./.
chr2	99978146	.	C	.	.	LowGQX	END=99978151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978152	.	A	.	.	LowGQX	.	GT	./.
chr2	99978153	.	A	.	.	LowGQX	END=99978156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978157	.	G	.	.	LowGQX	.	GT	./.
chr2	99978158	.	A	.	.	LowGQX	END=99978171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978172	.	A	.	.	LowGQX	.	GT	./.
chr2	99978173	.	A	.	.	LowGQX	END=99978174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978175	.	G	.	.	LowGQX	.	GT	./.
chr2	99978176	.	A	.	.	LowGQX	END=99978183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978184	.	A	.	.	LowGQX	.	GT	./.
chr2	99978185	.	G	.	.	LowGQX	END=99978193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978194	.	A	.	.	LowGQX	.	GT	./.
chr2	99978195	.	A	.	.	LowGQX	END=99978215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978216	.	A	.	.	LowGQX	.	GT	./.
chr2	99978217	.	G	.	.	LowGQX	END=99978222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978223	.	G	.	.	LowGQX	.	GT	./.
chr2	99978224	.	T	.	.	LowGQX	END=99978234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978235	.	G	.	.	LowGQX	.	GT	./.
chr2	99978236	.	T	.	.	LowGQX	END=99978238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978239	.	T	.	.	LowGQX	.	GT	./.
chr2	99978240	.	T	.	.	LowGQX	END=99978256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978257	.	A	.	.	LowGQX	.	GT	./.
chr2	99978258	.	A	.	.	LowGQX	END=99978260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978261	.	A	.	.	LowGQX	.	GT	./.
chr2	99978262	.	G	.	.	LowGQX	END=99978267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978268	.	C	.	.	LowGQX	.	GT	./.
chr2	99978269	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978270	.	C	.	.	LowGQX	.	GT	./.
chr2	99978271	.	A	.	.	LowGQX	END=99978282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99978283	.	G	.	.	LowGQX	END=99978285	GT	./.
chr2	99980106	.	A	.	.	LowGQX	END=99980327	GT	./.
chr2	99980732	.	A	.	.	LowGQX	END=99980886	GT	./.
chr2	99984904	.	C	.	.	LowGQX	END=99985056	GT	./.
chr2	99985850	.	T	.	.	LowGQX	END=99985949	GT	./.
chr2	99988107	.	T	.	.	LowGQX	END=99988206	GT	./.
chr2	99992808	.	A	.	.	LowGQX	END=99993101	GT	./.
chr2	99995480	.	A	.	.	LowGQX	END=99995488	GT	./.
chr2	99995489	.	G	.	.	LowGQX	END=99995514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99995515	.	A	.	.	LowGQX	.	GT	./.
chr2	99995516	.	C	.	.	LowGQX	END=99995591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99995779	.	A	.	.	LowGQX	END=99995809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99995810	.	A	.	.	LowGQX	.	GT	./.
chr2	99995811	.	G	.	.	LowGQX	END=99995827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99995828	.	A	.	.	LowGQX	.	GT	./.
chr2	99995829	.	C	.	.	LowGQX	END=99995834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99995835	.	G	.	.	LowGQX	END=99995874	GT	./.
chr2	99995875	.	C	.	.	LowGQX	END=99995893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	99998606	.	T	.	.	LowGQX	END=99998705	GT	./.
chr2	99999241	.	A	.	.	LowGQX	END=99999386	GT	./.
chr2	100006179	.	A	.	.	LowGQX	END=100006192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100006193	.	T	.	.	LowGQX	.	GT	./.
chr2	100006194	.	A	.	.	LowGQX	END=100006219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100006220	.	G	.	.	LowGQX	.	GT	./.
chr2	100006221	.	A	.	.	LowGQX	END=100006238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100006239	.	A	.	.	LowGQX	END=100006314	GT	./.
chr2	100006680	.	A	.	.	LowGQX	END=100006866	GT	./.
chr2	100007005	.	A	.	.	LowGQX	END=100007017	GT	./.
chr2	100007018	.	C	.	.	LowGQX	END=100007047;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100007048	.	C	.	36.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:6.02:60:6
chr2	100007049	.	T	.	.	LowGQX	END=100007170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	100009428	.	A	.	.	LowGQX	END=100009563	GT	./.
chr2	100010728	.	A	.	.	LowGQX	END=100010863	GT	./.
chr2	100010961	.	C	.	.	LowGQX	END=100011060	GT	./.
chr2	100011180	.	A	.	.	LowGQX	END=100011348	GT	./.
chr2	100013221	.	A	.	.	LowGQX	END=100013225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100013226	.	C	.	.	LowGQX	.	GT	./.
chr2	100013227	.	A	.	.	LowGQX	END=100013228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100013229	.	A	.	.	LowGQX	END=100013253	GT	./.
chr2	100013254	.	A	.	.	LowGQX	END=100013308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100013309	.	T	.	.	LowGQX	.	GT	./.
chr2	100013310	.	G	.	.	LowGQX	END=100013363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100015209	.	A	.	.	LowGQX	END=100015374	GT	./.
chr2	100015768	.	A	.	.	LowGQX	END=100015879	GT	./.
chr2	100017702	.	A	.	.	LowGQX	END=100017817	GT	./.
chr2	100018705	.	A	.	.	LowGQX	END=100018864	GT	./.
chr2	100019105	.	A	.	.	LowGQX	END=100019265	GT	./.
chr2	100019350	.	A	.	.	LowGQX	END=100019431	GT	./.
chr2	100019432	.	G	.	.	LowGQX	END=100019445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100019446	.	C	.	.	LowGQX	.	GT	./.
chr2	100019447	.	T	.	.	LowGQX	END=100019461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100019462	.	T	.	.	LowGQX	.	GT	./.
chr2	100019463	.	A	.	.	LowGQX	END=100019471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100019472	.	A	.	.	LowGQX	.	GT	./.
chr2	100019473	.	C	.	.	LowGQX	END=100019487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100019488	.	G	.	.	LowGQX	.	GT	./.
chr2	100019489	.	G	.	.	LowGQX	END=100019500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100019501	.	T	.	.	LowGQX	.	GT	./.
chr2	100019502	.	T	.	.	LowGQX	END=100019512;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100019513	.	T	.	.	LowGQX	.	GT	./.
chr2	100019514	.	G	.	.	LowGQX	END=100019522;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100019523	.	C	.	.	LowGQX	END=100019524	GT	./.
chr2	100019525	.	T	.	.	LowGQX	END=100019533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100019534	.	C	.	.	LowGQX	.	GT	./.
chr2	100019535	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100019536	.	G	.	.	LowGQX	END=100019537	GT	./.
chr2	100019538	.	T	.	.	LowGQX	END=100019539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100019540	.	C	.	.	LowGQX	.	GT	./.
chr2	100019541	.	C	.	.	LowGQX	END=100019544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100019545	.	A	.	.	LowGQX	.	GT	./.
chr2	100019546	.	G	.	.	LowGQX	END=100019561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100019562	.	C	.	.	LowGQX	.	GT	./.
chr2	100019563	.	T	.	.	LowGQX	END=100019565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	100019566	.	G	.	.	LowGQX	.	GT	./.
chr2	100019567	.	G	.	.	LowGQX	END=100019571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	100020156	.	A	.	.	LowGQX	END=100020280	GT	./.
chr2	100020835	.	G	.	.	LowGQX	END=100021204	GT	./.
chr2	100022370	.	A	.	.	LowGQX	END=100022570	GT	./.
chr2	100022785	.	A	.	.	LowGQX	END=100022954	GT	./.
chr2	100024489	.	A	.	.	LowGQX	END=100024595	GT	./.
chr2	100027155	.	A	.	.	LowGQX	END=100027331	GT	./.
chr2	100029191	.	A	.	.	LowGQX	END=100029415	GT	./.
chr2	100035288	.	A	.	.	LowGQX	END=100035411	GT	./.
chr2	100037959	.	A	.	.	LowGQX	END=100038117	GT	./.
chr2	100040612	.	A	.	.	LowGQX	END=100040744	GT	./.
chr2	100041243	.	T	.	.	LowGQX	END=100041310	GT	./.
chr2	100041311	.	T	.	.	LowGQX	END=100041361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100046300	.	A	.	.	LowGQX	END=100046412	GT	./.
chr2	100050792	.	A	.	.	LowGQX	END=100050912	GT	./.
chr2	100052294	.	A	.	.	LowGQX	END=100052453	GT	./.
chr2	100055037	.	A	.	.	LowGQX	END=100055054	GT	./.
chr2	100055055	.	G	.	.	LowGQX	END=100055081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100055082	.	T	.	.	LowGQX	.	GT	./.
chr2	100055083	.	G	.	.	LowGQX	END=100055086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100055087	.	A	.	.	LowGQX	END=100055088	GT	./.
chr2	100055089	.	C	.	.	LowGQX	END=100055095;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100055096	.	T	.	.	LowGQX	.	GT	./.
chr2	100055097	.	T	.	.	LowGQX	END=100055101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100055102	.	T	.	.	LowGQX	.	GT	./.
chr2	100055103	.	T	.	.	LowGQX	END=100055109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100055110	.	A	.	.	LowGQX	END=100055111	GT	./.
chr2	100055112	.	C	.	.	LowGQX	END=100055164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100055165	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	100055166	.	C	.	.	LowGQX	END=100055210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100055211	.	A	.	.	LowGQX	.	GT	./.
chr2	100055212	.	T	.	.	LowGQX	END=100055242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100055243	.	C	.	.	LowGQX	.	GT	./.
chr2	100055244	.	T	.	.	LowGQX	END=100055291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100055292	.	T	.	.	LowGQX	END=100055774	GT	./.
chr2	100058777	.	A	.	.	LowGQX	END=100058933	GT	./.
chr2	100065776	.	A	.	.	LowGQX	END=100065968	GT	./.
chr2	100067901	.	T	.	.	LowGQX	END=100068000	GT	./.
chr2	100078956	.	A	.	.	LowGQX	END=100079125	GT	./.
chr2	100081361	.	A	.	.	LowGQX	END=100081460	GT	./.
chr2	100167934	.	C	.	.	PASS	END=100167965;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	100167966	.	G	.	.	PASS	END=100168008;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	100168009	.	C	.	.	PASS	END=100168035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	100168036	.	A	.	.	PASS	END=100168059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	100170771	.	A	.	.	PASS	END=100170886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	100170887	.	T	.	.	PASS	END=100170911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	100170912	.	G	.	.	PASS	END=100170970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:96:60
chr2	100170971	.	A	.	.	PASS	END=100170998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:87:60
chr2	100171120	.	A	.	.	PASS	END=100171219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	100175334	.	T	.	.	PASS	END=100175427;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr2	100175428	.	T	.	.	PASS	END=100175433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:60
chr2	100176813	.	A	.	.	PASS	END=100176823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	100176824	.	C	.	.	PASS	END=100176840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	100176841	.	T	.	.	PASS	END=100176912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr2	100181947	.	A	.	.	PASS	END=100182053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:99:60
chr2	100182054	.	G	.	.	PASS	END=100182067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	100182068	.	C	.	.	PASS	END=100182087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	100185296	.	G	.	.	PASS	END=100185395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	100189044	.	A	.	.	LowGQX	END=100189143	GT	./.
chr2	100194787	.	A	.	.	PASS	END=100194847;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr2	100194848	.	C	.	.	PASS	END=100194936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:223:99:60
chr2	100194937	.	T	.	.	PASS	END=100194956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr2	100197148	.	A	.	.	LowGQX	END=100197158	GT	./.
chr2	100197159	.	A	.	.	LowGQX	END=100197307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100199258	.	A	.	.	PASS	END=100199335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	100199336	.	C	.	.	PASS	END=100199388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	100199389	.	T	.	.	PASS	END=100199462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	100199463	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:108:99:60
chr2	100203614	.	A	.	.	PASS	END=100203723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	100203724	.	T	.	.	PASS	END=100203742;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	100209655	.	A	.	.	PASS	END=100209703;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr2	100209704	.	C	.	.	PASS	END=100209754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr2	100209755	.	T	.	.	PASS	END=100210038;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:281:99:60
chr2	100210039	.	G	.	.	PASS	END=100210158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:307:99:60
chr2	100210159	.	A	.	.	PASS	END=100210193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:233:99:60
chr2	100210194	.	G	.	.	PASS	END=100210215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr2	100210216	.	C	.	.	PASS	END=100210245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:99:60
chr2	100210246	.	T	.	.	PASS	END=100210275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	100210276	.	G	.	.	PASS	END=100210295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	100210296	.	C	.	.	PASS	END=100210322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:90:60
chr2	100210323	.	G	.	.	PASS	END=100210332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:96:60
chr2	100210333	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:75:60
chr2	100210334	.	C	.	.	PASS	END=100210349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	100210350	.	G	.	.	PASS	END=100210354;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	100210355	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:45:60
chr2	100210356	.	C	.	.	PASS	END=100210357;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:78:60
chr2	100210358	.	T	.	.	PASS	END=100210360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:63:60
chr2	100210361	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:48:60
chr2	100210362	.	G	.	.	PASS	END=100210364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:78:60
chr2	100210365	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:30:36:60
chr2	100210366	.	T	.	.	PASS	END=100210373;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:69:60
chr2	100210374	.	C	.	.	PASS	END=100210388;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:60
chr2	100210389	.	A	.	.	PASS	END=100210397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr2	100210398	.	C	.	.	PASS	END=100210407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr2	100210408	.	G	.	.	PASS	END=100210413;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:72:60
chr2	100210414	.	G	.	.	PASS	END=100210423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:84:60
chr2	100210424	.	C	.	.	PASS	END=100210448;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	100210449	.	C	.	.	PASS	END=100210462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	100210463	.	C	.	.	PASS	END=100210487;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	100210488	.	C	.	.	PASS	END=100210519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	100210520	.	T	.	.	PASS	END=100210694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	100210695	.	A	.	.	PASS	END=100210745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	100210746	.	T	.	.	PASS	END=100210753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	100217895	.	A	.	.	PASS	END=100217976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	100217977	.	T	.	.	PASS	END=100218048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	100218049	.	C	.	.	PASS	END=100218085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr2	100247423	.	C	.	.	LowGQX	END=100247522	GT	./.
chr2	100266059	.	T	.	.	PASS	END=100266089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	100266090	.	G	.	.	PASS	END=100266158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	100288976	.	T	.	.	PASS	END=100289070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	100289071	.	G	.	.	PASS	END=100289075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	100343514	.	C	.	.	PASS	END=100343556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	100343557	.	C	T	2656.66	PASS	DP=100;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=4.7346;MQ=60;MQ0=0;QD=26.57;SB=-1751.16	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,100:100:99:2690,199,0:60:99:1.000
chr2	100343558	.	T	.	.	PASS	END=100343611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	100343612	.	A	.	.	PASS	END=100343633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	100343634	.	A	.	.	PASS	END=100343651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:60
chr2	100343652	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:61:60
chr2	100343653	.	A	.	.	PASS	END=100343664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr2	100360535	.	A	G	552.86	PASS	BaseQRankSum=0.165;DP=43;Dels=0.00;FS=10.241;HRun=1;HaplotypeScore=10.6614;MQ=59;MQ0=0;MQRankSum=-0.597;QD=12.86;ReadPosRankSum=2.554;SB=-181.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:18,24:43:99:583,0,471:59:99:0.571
chr2	100360536	.	G	.	.	PASS	END=100360562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:95:59
chr2	100360563	.	T	.	.	PASS	END=100360574;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:59
chr2	100360575	.	T	.	.	PASS	END=100360634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	100368674	.	A	.	.	PASS	END=100368764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	100368765	.	T	.	.	PASS	END=100368773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	100453913	.	T	.	.	PASS	END=100453949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	100453950	.	C	.	.	PASS	END=100454012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	100623092	.	A	.	.	PASS	END=100623130;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	100623131	.	G	.	.	PASS	END=100623171;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	100623172	.	C	.	.	PASS	END=100623365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr2	100623366	.	C	.	.	PASS	END=100623481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	100623608	.	A	.	.	PASS	END=100623656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	100623657	.	C	.	.	PASS	END=100623773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:60
chr2	100623774	.	A	.	.	PASS	END=100623907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:247:99:60
chr2	100623908	.	A	.	.	PASS	END=100623924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr2	100625272	.	A	.	.	PASS	END=100625284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	100625285	.	C	.	.	PASS	END=100625334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	100625335	.	T	.	.	PASS	END=100625393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	100625394	.	A	.	.	PASS	END=100625396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	100627947	.	C	.	.	PASS	END=100628016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	100628017	.	T	.	.	PASS	END=100628046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	100720821	.	T	.	.	LowGQX	END=100720823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:12:25
chr2	100720824	.	C	.	.	LowGQX	END=100720840;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:15:32
chr2	100720841	.	A	.	.	LowGQX	END=100720844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:12:32
chr2	100720845	.	G	.	.	LowGQX	END=100720852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:15:32
chr2	100720853	.	C	.	.	LowGQX	END=100720866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:18:33
chr2	100720867	.	A	.	.	LowGQX	END=100720878;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:21:37
chr2	100720879	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:34:2:42
chr2	100720880	.	C	.	.	PASS	END=100720882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:30:42
chr2	100720883	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:34:27:42
chr2	100720884	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:34:30:42
chr2	100720885	.	T	.	.	LowGQX	END=100720886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:27:42
chr2	100720887	.	C	.	.	PASS	END=100720893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:30:42
chr2	100720894	.	A	.	.	LowGQX	END=100720898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:27:44
chr2	100720899	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:30:44
chr2	100720900	.	A	.	.	LowGQX	END=100720901;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:27:44
chr2	100720902	.	G	.	.	PASS	END=100720905;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:30:43
chr2	100720906	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:27:45
chr2	100720907	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:30:45
chr2	100720908	.	G	.	.	LowGQX	END=100720911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:27:45
chr2	100720912	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:29:1:45
chr2	100720913	.	C	.	.	PASS	END=100720918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:30:45
chr2	100720919	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:24:46
chr2	100720920	.	G	.	.	PASS	END=100720921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:30:50
chr2	100720922	.	G	.	.	LowGQX	END=100720923;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:24:51
chr2	100720924	.	G	.	.	PASS	END=100720925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:56
chr2	100720926	.	T	.	.	LowGQX	END=100720927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:24:56
chr2	100720928	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:56
chr2	100720929	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:56
chr2	100720930	.	A	.	.	PASS	END=100720934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:56
chr2	100720935	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:27:56
chr2	100720936	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:18:30:56
chr2	100720937	.	C	.	.	LowGQX	END=100720940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:27:56
chr2	100720941	.	C	.	.	PASS	END=100720944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:56
chr2	100720945	.	G	.	.	LowGQX	END=100720946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:27:56
chr2	100720947	.	T	.	.	PASS	END=100720949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:57
chr2	100720950	.	C	.	.	LowGQX	END=100720970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:21:57
chr2	100720971	.	C	.	.	LowGQX	END=100720980;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:12:60
chr2	100721956	.	T	.	.	LowGQX	END=100722055	GT	./.
chr2	100722090	.	A	.	.	LowGQX	END=100722189	GT	./.
chr2	100722241	.	C	.	.	LowGQX	END=100722484	GT	./.
chr2	100900758	.	A	.	.	LowGQX	END=100900956	GT	./.
chr2	100903374	.	A	.	.	LowGQX	END=100903527	GT	./.
chr2	100906718	.	A	.	.	LowGQX	END=100906884	GT	./.
chr2	100910619	.	T	.	.	LowGQX	END=100910851	GT	./.
chr2	100911892	.	A	.	.	LowGQX	END=100912017	GT	./.
chr2	100915296	.	A	.	.	LowGQX	END=100915414	GT	./.
chr2	100915685	.	T	.	.	LowGQX	END=100915773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100915774	.	T	.	.	LowGQX	END=100915784	GT	./.
chr2	100916177	.	A	.	.	LowGQX	.	GT	./.
chr2	100916178	.	C	.	.	LowGQX	END=100916185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100916186	.	G	.	.	LowGQX	.	GT	./.
chr2	100916187	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100916188	.	G	.	.	LowGQX	END=100916189	GT	./.
chr2	100916190	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100916191	.	T	.	.	LowGQX	.	GT	./.
chr2	100916192	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100916193	.	T	.	.	LowGQX	.	GT	./.
chr2	100916194	.	T	.	.	LowGQX	END=100916198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100916199	.	G	.	.	LowGQX	END=100916201	GT	./.
chr2	100916202	.	G	.	.	LowGQX	END=100916203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100916204	.	G	.	.	LowGQX	.	GT	./.
chr2	100916205	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100916206	.	T	.	.	LowGQX	END=100916208	GT	./.
chr2	100916209	.	G	.	.	LowGQX	END=100916214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100916215	.	G	.	.	LowGQX	.	GT	./.
chr2	100916216	.	T	.	.	LowGQX	END=100916219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100916220	.	T	.	.	LowGQX	END=100916377	GT	./.
chr2	100916378	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100916379	.	T	.	.	LowGQX	END=100916381	GT	./.
chr2	100916382	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100917104	.	A	.	.	LowGQX	END=100917251	GT	./.
chr2	100919381	.	A	.	.	LowGQX	END=100919507	GT	./.
chr2	100925567	.	A	.	.	LowGQX	END=100925652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100925653	.	C	.	.	LowGQX	.	GT	./.
chr2	100925654	.	G	.	.	LowGQX	END=100925736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100937864	.	G	.	.	LowGQX	END=100937912;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	100937913	.	C	.	.	LowGQX	END=100938557	GT	./.
chr2	101009705	.	C	.	.	LowGQX	END=101009964	GT	./.
chr2	101009965	.	A	.	.	LowGQX	END=101010017;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101010018	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	101010019	.	G	.	.	LowGQX	END=101010083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101010084	.	T	.	.	LowGQX	.	GT	./.
chr2	101010085	.	C	.	.	LowGQX	END=101010246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101011969	.	A	.	.	LowGQX	END=101012078	GT	./.
chr2	101014368	.	A	.	.	LowGQX	END=101014606	GT	./.
chr2	101019022	.	C	.	.	LowGQX	END=101019121	GT	./.
chr2	101023036	.	A	.	.	LowGQX	END=101023169	GT	./.
chr2	101031488	.	T	.	.	LowGQX	END=101031587	GT	./.
chr2	101033421	.	G	.	.	LowGQX	END=101033520	GT	./.
chr2	101086939	.	C	.	.	LowGQX	END=101087038	GT	./.
chr2	101089235	.	A	.	.	LowGQX	END=101089275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101089276	.	T	.	.	LowGQX	END=101089334	GT	./.
chr2	101089927	.	T	.	.	LowGQX	END=101090026	GT	./.
chr2	101093668	.	A	.	.	LowGQX	END=101093767	GT	./.
chr2	101093800	.	T	.	.	LowGQX	END=101093899	GT	./.
chr2	101095803	.	T	.	.	LowGQX	END=101095902	GT	./.
chr2	101096926	.	G	.	.	LowGQX	END=101097025	GT	./.
chr2	101097559	.	A	.	.	LowGQX	END=101097658	GT	./.
chr2	101098707	.	C	.	.	LowGQX	END=101098708	GT	./.
chr2	101098709	.	G	.	.	LowGQX	END=101098736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101098737	.	A	.	.	LowGQX	.	GT	./.
chr2	101098738	.	G	.	.	LowGQX	END=101098745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101098746	.	A	.	.	LowGQX	.	GT	./.
chr2	101098747	.	T	.	.	LowGQX	END=101098749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101098750	.	A	.	.	LowGQX	.	GT	./.
chr2	101098751	.	A	.	.	LowGQX	END=101098752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101098753	.	A	.	.	LowGQX	.	GT	./.
chr2	101098754	.	A	.	.	LowGQX	END=101098769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101098770	.	C	.	.	LowGQX	.	GT	./.
chr2	101098771	.	C	.	.	LowGQX	END=101098774;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101098775	.	T	.	.	LowGQX	.	GT	./.
chr2	101098776	.	A	.	.	LowGQX	END=101098786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101098787	.	G	.	.	LowGQX	END=101098788	GT	./.
chr2	101098789	.	T	.	.	LowGQX	END=101098791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101098792	.	G	.	.	LowGQX	END=101098793	GT	./.
chr2	101098794	.	T	.	.	LowGQX	END=101098795;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101098796	.	C	.	.	LowGQX	.	GT	./.
chr2	101098797	.	A	.	.	LowGQX	END=101098799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101098800	.	A	.	.	LowGQX	.	GT	./.
chr2	101098801	.	C	.	.	LowGQX	END=101098806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101099671	.	A	.	.	LowGQX	END=101099770	GT	./.
chr2	101125739	.	A	.	.	LowGQX	END=101126077	GT	./.
chr2	101179483	.	G	.	.	LowGQX	END=101179582	GT	./.
chr2	101182963	.	A	.	.	LowGQX	END=101183093	GT	./.
chr2	101185389	.	T	.	.	LowGQX	END=101185488	GT	./.
chr2	101186038	.	A	.	.	LowGQX	END=101186185	GT	./.
chr2	101188050	.	A	.	.	LowGQX	END=101188052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101188053	.	A	.	.	LowGQX	.	GT	./.
chr2	101188054	.	T	.	.	LowGQX	END=101188073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101188074	.	A	.	.	LowGQX	.	GT	./.
chr2	101188075	.	A	.	.	LowGQX	END=101188081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101188082	.	C	.	.	LowGQX	.	GT	./.
chr2	101188083	.	C	.	.	LowGQX	END=101188106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101188107	.	C	.	.	LowGQX	.	GT	./.
chr2	101188108	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101188109	.	T	.	.	LowGQX	.	GT	./.
chr2	101188110	.	G	.	.	LowGQX	END=101188124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101188125	.	A	.	.	LowGQX	.	GT	./.
chr2	101188126	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101188127	.	A	.	.	LowGQX	.	GT	./.
chr2	101188128	.	G	.	.	LowGQX	END=101188136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101188137	.	A	.	.	LowGQX	.	GT	./.
chr2	101188138	.	C	.	.	LowGQX	END=101188168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101188169	.	T	.	.	LowGQX	.	GT	./.
chr2	101188170	.	C	.	.	LowGQX	END=101188289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101192814	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101192815	.	G	.	.	LowGQX	.	GT	./.
chr2	101192816	.	A	.	.	LowGQX	END=101192835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101192836	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	101192837	.	A	.	.	LowGQX	END=101192900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101192901	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	101192902	.	T	.	.	LowGQX	END=101192916;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101192917	.	T	.	.	LowGQX	END=101192960	GT	./.
chr2	101437487	.	G	.	.	LowGQX	END=101437661	GT	./.
chr2	101521173	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:77:99:60
chr2	101521173	.	ATT	A,AT	1494.73	PASS	BaseQRankSum=0.200;DP=80;FS=3.014;HaplotypeScore=353.6696;MQ=60;MQ0=0;MQRankSum=0.780;QD=18.68;ReadPosRankSum=-1.216;SB=-722.36	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/2:19,34,0:80:99:1573,264,168,915,0,771:60:99:0.642
chr2	101521174	.	T	.	.	LowGQX	DP=79;MQ=60;MQ0=0	GT:AD:DP:MQ	.:16:16:60
chr2	101521175	.	T	.	.	LowGQX	DP=79;MQ=60;MQ0=0	GT:AD:DP:MQ	.:35:35:60
chr2	101521176	.	T	.	.	PASS	END=101521189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	101521190	.	T	.	.	PASS	END=101521272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	101541606	.	A	.	.	PASS	END=101541642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:60
chr2	101541643	.	A	.	.	PASS	END=101541657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	101541658	.	T	.	.	PASS	END=101541682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	101541683	.	C	.	.	PASS	END=101541760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	101541761	.	A	.	.	PASS	END=101541762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	101549368	.	C	.	.	PASS	END=101549442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	101549443	.	T	.	.	PASS	END=101549467;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	101554210	.	C	.	.	PASS	END=101554225;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:82:60
chr2	101554226	.	C	.	.	PASS	END=101554266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	101554267	.	T	.	.	PASS	END=101554309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	101564645	.	T	.	.	PASS	END=101564663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:60:60
chr2	101564664	.	G	.	.	PASS	END=101564671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:75:60
chr2	101564672	.	C	.	.	PASS	END=101564697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:93:60
chr2	101564698	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:48:70:60
chr2	101564699	.	G	.	.	PASS	END=101564781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:99:60
chr2	101564782	.	T	.	.	PASS	END=101564802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:78:60
chr2	101564803	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:45:60
chr2	101564804	.	A	.	.	PASS	END=101564819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:72:60
chr2	101565777	.	C	.	.	PASS	END=101565793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:83:60
chr2	101565794	.	C	.	.	PASS	END=101565812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	101565813	.	T	.	.	PASS	END=101565844;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	101565845	.	G	.	.	PASS	END=101565889;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	101565890	.	T	.	.	PASS	END=101565943;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	101565944	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:97:99:60
chr2	101580518	.	A	.	.	PASS	END=101580520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:96:60
chr2	101580521	.	G	.	.	PASS	END=101580531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	101580532	.	C	.	.	PASS	END=101580552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	101580553	.	C	T	1341.28	PASS	BaseQRankSum=2.175;DP=109;Dels=0.00;FS=1.696;HRun=0;HaplotypeScore=23.6730;MQ=60;MQ0=0;MQRankSum=0.742;QD=12.31;ReadPosRankSum=0.804;SB=-825.88	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:45,63:109:99:1371,0,973:60:99:0.583
chr2	101580554	.	C	.	.	PASS	END=101580638;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	101580639	.	G	.	.	PASS	END=101580640;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	101581261	.	C	.	.	PASS	END=101581262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr2	101581263	.	A	.	.	PASS	END=101581264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:60
chr2	101581265	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:66:60
chr2	101581266	.	C	.	.	PASS	END=101581294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:60
chr2	101581294	.	C	CT	19.72	LowGQX;LowQD	BaseQRankSum=-0.844;DP=47;FS=6.432;HRun=13;HaplotypeScore=331.5625;MQ=60;MQ0=0;MQRankSum=0.495;QD=0.42;ReadPosRankSum=-0.756;SB=-12.34	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,7:47:58.71:59,0,687:60:20:0.171
chr2	101581295	.	T	.	.	PASS	END=101581307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	101581308	.	C	.	60.18	PASS	DP=55;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:42:55:30.18:60:30
chr2	101581309	.	T	.	.	PASS	END=101581311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:72:60
chr2	101581312	.	T	.	.	PASS	END=101581334;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:88:60
chr2	101581335	.	G	.	.	PASS	END=101581414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	101582120	.	A	.	.	PASS	END=101582215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	101582216	.	T	.	.	PASS	END=101582230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	101584741	.	A	.	.	PASS	END=101584802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	101584803	.	G	.	.	PASS	END=101584856;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	101584857	.	C	.	.	PASS	END=101584879;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	101584880	.	T	.	.	PASS	END=101584892;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	101587445	.	T	.	.	PASS	END=101587539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:60
chr2	101587540	.	C	.	.	PASS	END=101587544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:75:60
chr2	101591263	.	A	.	.	PASS	END=101591296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	101591297	.	C	.	.	PASS	END=101591303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr2	101591304	.	A	G	4062.81	PASS	BaseQRankSum=1.035;DP=149;Dels=0.00;FS=3.270;HRun=0;HaplotypeScore=13.3516;MQ=60;MQ0=0;MQRankSum=0.570;QD=27.27;ReadPosRankSum=0.593;SB=-2314.70	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:1,148:149:99:4063,277,0:60:99:0.993
chr2	101591305	.	C	.	.	PASS	END=101591329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr2	101591330	.	T	.	.	PASS	END=101591400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr2	101591401	.	C	.	.	PASS	END=101591408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	101591918	.	A	.	.	PASS	END=101591996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	101591997	.	G	.	.	PASS	END=101592024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:87:60
chr2	101592025	.	T	.	.	PASS	END=101592031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	101594167	.	C	.	.	PASS	END=101594237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	101594238	.	A	.	.	PASS	END=101594266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	101598691	.	A	.	.	PASS	END=101598732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	101598733	.	A	.	.	PASS	END=101598816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:99:60
chr2	101598817	.	T	.	.	PASS	END=101598841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:60
chr2	101604539	.	A	.	.	PASS	END=101604565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:99:60
chr2	101604566	.	C	.	.	PASS	END=101604672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:60
chr2	101604673	.	C	.	.	PASS	END=101604712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:60
chr2	101604713	.	G	.	.	PASS	END=101604740;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr2	101606716	.	A	.	.	PASS	END=101606741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	101606742	.	C	.	.	PASS	END=101606886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr2	101606887	.	T	.	.	PASS	END=101606910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:60
chr2	101607239	.	A	.	.	PASS	END=101607338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:60
chr2	101609807	.	A	.	.	PASS	END=101609813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	101609814	.	C	.	.	PASS	END=101609826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	101609827	.	C	T	2246.09	PASS	BaseQRankSum=3.608;DP=171;Dels=0.00;FS=4.844;HRun=0;HaplotypeScore=18.0340;MQ=60;MQ0=0;MQRankSum=-0.063;QD=13.14;ReadPosRankSum=0.824;SB=-860.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:83,88:171:99:2276,0,2075:60:99:0.515
chr2	101609828	.	G	.	.	PASS	END=101609862;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:99:60
chr2	101609863	.	C	.	.	PASS	END=101609959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr2	101609960	.	C	.	.	PASS	END=101609975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	101609976	.	A	.	.	PASS	END=101609991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	101611860	.	A	.	.	PASS	END=101611882;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	101611883	.	C	.	.	PASS	END=101611952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	101611953	.	A	.	.	PASS	END=101611976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	101611977	.	C	.	.	PASS	END=101612012;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	101612013	.	A	.	.	PASS	END=101612046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:60
chr2	101612217	.	A	.	.	PASS	END=101612232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	101612233	.	T	.	.	PASS	END=101612235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	101612236	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:22:21:60
chr2	101612237	.	C	.	.	PASS	END=101612238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr2	101612239	.	T	.	.	PASS	END=101612258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:48:60
chr2	101612259	.	T	.	.	PASS	END=101612260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr2	101612261	.	C	.	.	PASS	END=101612277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:51:60
chr2	101612278	.	G	.	.	PASS	END=101612279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr2	101612280	.	C	.	.	LowGQX	END=101612285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	101612286	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr2	101612287	.	G	.	.	LowGQX	END=101612290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	101612291	.	G	.	.	LowGQX	END=101612293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	101612294	.	A	.	.	LowGQX	END=101612295;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr2	101612296	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr2	101612297	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr2	101612298	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:0:60
chr2	101612299	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:21:60
chr2	101612300	.	T	.	.	LowGQX	END=101612306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr2	101612307	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr2	101612308	.	G	.	.	LowGQX	END=101612314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	101612315	.	T	.	.	LowGQX	.	GT	./.
chr2	101612316	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101619162	.	A	.	.	LowGQX	END=101619272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101620618	.	A	.	.	LowGQX	END=101620624	GT	./.
chr2	101620625	.	T	.	.	LowGQX	END=101620693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101620694	.	A	.	.	LowGQX	.	GT	./.
chr2	101620695	.	T	.	.	LowGQX	END=101620728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101620729	.	T	.	.	LowGQX	.	GT	./.
chr2	101620730	.	G	.	.	LowGQX	END=101620752;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101622379	.	A	.	.	LowGQX	END=101622553	GT	./.
chr2	101622778	.	T	.	.	LowGQX	END=101622877	GT	./.
chr2	101624282	.	G	.	.	LowGQX	END=101624460	GT	./.
chr2	101624461	.	G	.	.	LowGQX	END=101624470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101624471	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=3;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	101624472	.	T	.	.	LowGQX	END=101624573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101624574	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	101624575	.	C	.	.	LowGQX	END=101624631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101624632	.	A	.	.	LowGQX	END=101624735	GT	./.
chr2	101627390	.	C	.	.	LowGQX	END=101627408	GT	./.
chr2	101627409	.	T	.	.	LowGQX	END=101627489;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101627908	.	C	.	.	LowGQX	END=101628007	GT	./.
chr2	101634294	.	A	.	.	LowGQX	END=101634393	GT	./.
chr2	101635430	.	A	.	.	LowGQX	END=101635434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101635435	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	101635436	.	T	.	.	LowGQX	END=101635450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101635451	.	C	.	.	LowGQX	.	GT	./.
chr2	101635452	.	T	.	.	LowGQX	END=101635461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101635462	.	T	.	.	LowGQX	.	GT	./.
chr2	101635463	.	C	.	.	LowGQX	END=101635475;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101635476	.	T	.	.	LowGQX	END=101635477	GT	./.
chr2	101635478	.	T	.	.	LowGQX	END=101635495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101635496	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	101635497	.	A	.	.	LowGQX	END=101635502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101635503	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	101635504	.	G	.	.	LowGQX	END=101635513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101635514	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-36.14	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	101635515	.	G	.	.	LowGQX	END=101635524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101635525	.	A	.	.	LowGQX	.	GT	./.
chr2	101635526	.	G	.	.	LowGQX	END=101635528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101635529	.	C	.	.	LowGQX	.	GT	./.
chr2	101638126	.	T	.	.	LowGQX	END=101638225	GT	./.
chr2	101638672	.	G	.	.	LowGQX	END=101639051	GT	./.
chr2	101640044	.	C	.	.	LowGQX	END=101640143	GT	./.
chr2	101643829	.	T	.	.	LowGQX	END=101643928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101644509	.	C	.	.	LowGQX	END=101644608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101644714	.	T	.	.	LowGQX	END=101644894	GT	./.
chr2	101645952	.	C	.	.	LowGQX	END=101646170	GT	./.
chr2	101646171	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101646172	.	T	.	.	LowGQX	.	GT	./.
chr2	101646173	.	G	.	.	LowGQX	END=101646221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101646222	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	101646223	.	T	.	.	LowGQX	END=101646238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101648729	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101648730	.	C	.	.	LowGQX	.	GT	./.
chr2	101648731	.	G	.	.	LowGQX	END=101648734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101648735	.	A	.	.	LowGQX	.	GT	./.
chr2	101648736	.	C	.	.	LowGQX	END=101648738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101648739	.	G	.	.	LowGQX	.	GT	./.
chr2	101648740	.	G	.	.	LowGQX	END=101648744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101648745	.	T	.	.	LowGQX	.	GT	./.
chr2	101648746	.	G	.	.	LowGQX	END=101648749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101648750	.	T	.	.	LowGQX	.	GT	./.
chr2	101648751	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101648752	.	A	.	.	LowGQX	.	GT	./.
chr2	101648753	.	T	.	.	LowGQX	END=101648755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101648756	.	G	.	.	LowGQX	END=101648757	GT	./.
chr2	101648758	.	C	.	.	LowGQX	END=101648772;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101648773	.	C	.	.	LowGQX	END=101648775	GT	./.
chr2	101648776	.	A	.	.	LowGQX	END=101648780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101648781	.	C	.	.	LowGQX	.	GT	./.
chr2	101648782	.	C	.	.	LowGQX	END=101648784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101648785	.	C	.	.	LowGQX	.	GT	./.
chr2	101648786	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101648787	.	G	.	.	LowGQX	END=101648788	GT	./.
chr2	101648789	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101648790	.	A	.	.	LowGQX	.	GT	./.
chr2	101648791	.	G	.	.	LowGQX	END=101648792;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101648793	.	A	.	.	LowGQX	.	GT	./.
chr2	101648794	.	G	.	.	LowGQX	END=101648798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101648799	.	C	.	.	LowGQX	END=101648800	GT	./.
chr2	101648801	.	T	.	.	LowGQX	END=101648804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101648805	.	C	.	.	LowGQX	.	GT	./.
chr2	101648806	.	C	.	.	LowGQX	END=101648807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101648808	.	T	.	.	LowGQX	END=101648809	GT	./.
chr2	101648810	.	G	.	.	LowGQX	END=101648811;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101648812	.	G	.	.	LowGQX	.	GT	./.
chr2	101648813	.	T	.	.	LowGQX	END=101648814;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101648815	.	C	.	5.68	LowGQX	DP=1;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0.01:60:0
chr2	101648816	.	A	.	.	LowGQX	END=101648818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101648819	.	A	.	.	LowGQX	END=101648847	GT	./.
chr2	101649850	.	T	.	.	LowGQX	END=101649869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101649870	.	G	.	.	LowGQX	.	GT	./.
chr2	101649871	.	G	.	.	LowGQX	END=101649876;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101649877	.	G	T	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	101649878	.	A	.	.	LowGQX	END=101649991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101649992	.	C	.	.	LowGQX	END=101650220	GT	./.
chr2	101652479	.	C	.	.	LowGQX	END=101652630	GT	./.
chr2	101653993	.	C	.	.	LowGQX	END=101654192	GT	./.
chr2	101654922	.	C	.	.	LowGQX	END=101655117	GT	./.
chr2	101656639	.	C	.	.	LowGQX	END=101656847	GT	./.
chr2	101666862	.	C	.	.	LowGQX	END=101667103	GT	./.
chr2	101670569	.	C	.	.	LowGQX	END=101670798	GT	./.
chr2	101675882	.	C	.	.	LowGQX	END=101675894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101675895	.	T	.	.	LowGQX	END=101676001	GT	./.
chr2	101706670	.	C	.	.	LowGQX	END=101706671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706672	.	A	.	.	LowGQX	.	GT	./.
chr2	101706673	.	G	.	.	LowGQX	END=101706684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706685	.	C	.	.	LowGQX	.	GT	./.
chr2	101706686	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706687	.	G	.	.	LowGQX	.	GT	./.
chr2	101706688	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706689	.	A	.	.	LowGQX	END=101706690	GT	./.
chr2	101706691	.	A	.	.	LowGQX	END=101706693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706694	.	T	.	.	LowGQX	.	GT	./.
chr2	101706695	.	C	.	.	LowGQX	END=101706697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706698	.	A	.	.	LowGQX	END=101706699	GT	./.
chr2	101706700	.	C	.	.	LowGQX	END=101706702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706703	.	T	.	.	LowGQX	END=101706704	GT	./.
chr2	101706705	.	C	.	.	LowGQX	END=101706708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706709	.	A	.	.	LowGQX	END=101706710	GT	./.
chr2	101706711	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706712	.	T	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	101706713	.	C	.	.	LowGQX	END=101706716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706717	.	A	.	.	LowGQX	.	GT	./.
chr2	101706718	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706719	.	A	.	.	LowGQX	END=101706721	GT	./.
chr2	101706722	.	C	.	.	LowGQX	END=101706725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706726	.	G	.	.	LowGQX	.	GT	./.
chr2	101706727	.	G	.	.	LowGQX	END=101706730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706731	.	A	.	.	LowGQX	.	GT	./.
chr2	101706732	.	A	.	.	LowGQX	END=101706735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706736	.	A	.	.	LowGQX	.	GT	./.
chr2	101706737	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706738	.	C	.	.	LowGQX	END=101706740	GT	./.
chr2	101706741	.	G	.	.	LowGQX	END=101706745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706746	.	C	.	.	LowGQX	.	GT	./.
chr2	101706747	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706748	.	G	.	.	LowGQX	.	GT	./.
chr2	101706749	.	G	.	.	LowGQX	END=101706750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706751	.	A	.	.	LowGQX	END=101706756	GT	./.
chr2	101706757	.	A	.	.	LowGQX	END=101706761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706762	.	A	.	.	LowGQX	END=101706764	GT	./.
chr2	101706765	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706766	.	C	.	.	LowGQX	END=101706767	GT	./.
chr2	101706768	.	A	.	.	LowGQX	END=101706770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706771	.	T	.	.	LowGQX	.	GT	./.
chr2	101706772	.	G	.	.	LowGQX	END=101706775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706776	.	C	.	.	LowGQX	.	GT	./.
chr2	101706777	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706778	.	A	.	.	LowGQX	END=101706781	GT	./.
chr2	101706782	.	G	.	.	LowGQX	END=101706783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706784	.	G	.	.	LowGQX	END=101706785	GT	./.
chr2	101706786	.	A	.	.	LowGQX	END=101706789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706790	.	G	.	.	LowGQX	END=101706791	GT	./.
chr2	101706792	.	A	.	.	LowGQX	END=101706793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706794	.	C	.	.	LowGQX	END=101706795	GT	./.
chr2	101706796	.	A	.	.	LowGQX	END=101706797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101706798	.	C	.	.	LowGQX	END=101706826	GT	./.
chr2	101767547	.	C	.	.	LowGQX	END=101767715	GT	./.
chr2	101869425	.	T	.	.	LowGQX	END=101869796	GT	./.
chr2	101869797	.	G	.	.	LowGQX	END=101869803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869804	.	G	.	.	LowGQX	END=101869805	GT	./.
chr2	101869806	.	C	.	.	LowGQX	END=101869812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869813	.	C	.	.	LowGQX	.	GT	./.
chr2	101869814	.	C	.	.	LowGQX	END=101869815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869816	.	G	.	.	LowGQX	.	GT	./.
chr2	101869817	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869818	.	T	.	.	LowGQX	.	GT	./.
chr2	101869819	.	C	.	.	LowGQX	END=101869820;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869821	.	G	.	.	LowGQX	.	GT	./.
chr2	101869822	.	G	.	.	LowGQX	END=101869831;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869832	.	C	.	.	LowGQX	.	GT	./.
chr2	101869833	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869834	.	C	.	.	LowGQX	END=101869835	GT	./.
chr2	101869836	.	C	.	.	LowGQX	END=101869838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869839	.	A	.	.	LowGQX	END=101869840	GT	./.
chr2	101869841	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869842	.	C	.	.	LowGQX	.	GT	./.
chr2	101869843	.	G	.	.	LowGQX	END=101869852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869853	.	A	.	.	LowGQX	END=101869854	GT	./.
chr2	101869855	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869856	.	C	.	.	LowGQX	.	GT	./.
chr2	101869857	.	C	.	.	LowGQX	END=101869872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869873	.	C	.	.	LowGQX	END=101869874	GT	./.
chr2	101869875	.	C	.	.	LowGQX	END=101869877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869878	.	A	.	.	LowGQX	.	GT	./.
chr2	101869879	.	C	.	.	LowGQX	END=101869886;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869887	.	A	.	.	LowGQX	END=101869888	GT	./.
chr2	101869889	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869890	.	C	.	.	LowGQX	END=101869895	GT	./.
chr2	101869896	.	C	.	.	LowGQX	END=101869897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869898	.	C	.	.	LowGQX	.	GT	./.
chr2	101869899	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869900	.	C	.	.	LowGQX	.	GT	./.
chr2	101869901	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869902	.	C	.	.	LowGQX	END=101869904	GT	./.
chr2	101869905	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869906	.	C	.	.	LowGQX	END=101869910	GT	./.
chr2	101869911	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869912	.	C	.	.	LowGQX	.	GT	./.
chr2	101869913	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869914	.	A	.	.	LowGQX	.	GT	./.
chr2	101869915	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869916	.	G	.	.	LowGQX	END=101869917	GT	./.
chr2	101869918	.	A	.	.	LowGQX	END=101869919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869920	.	C	.	.	LowGQX	.	GT	./.
chr2	101869921	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869922	.	G	.	.	LowGQX	END=101869925	GT	./.
chr2	101869926	.	G	.	.	LowGQX	END=101869928;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869929	.	C	.	.	LowGQX	.	GT	./.
chr2	101869930	.	T	.	.	LowGQX	END=101869934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869935	.	T	.	.	LowGQX	.	GT	./.
chr2	101869936	.	C	.	.	LowGQX	END=101869941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101869942	.	T	.	.	LowGQX	.	GT	./.
chr2	101874251	.	A	.	.	LowGQX	END=101874419	GT	./.
chr2	101878999	.	A	.	.	LowGQX	END=101879155	GT	./.
chr2	101881305	.	A	.	.	LowGQX	END=101881363	GT	./.
chr2	101881364	.	A	.	.	LowGQX	END=101881436;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101881437	.	C	.	.	LowGQX	.	GT	./.
chr2	101881438	.	A	.	.	LowGQX	END=101881482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101881483	.	C	.	.	LowGQX	.	GT	./.
chr2	101881484	.	C	.	.	LowGQX	END=101881511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101883137	.	A	.	.	LowGQX	END=101883290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101883291	.	T	.	.	LowGQX	END=101883343	GT	./.
chr2	101885500	.	A	.	.	LowGQX	END=101885604	GT	./.
chr2	101885676	.	A	.	.	LowGQX	END=101885691	GT	./.
chr2	101885692	.	T	.	.	LowGQX	END=101885705;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101885706	.	T	.	.	LowGQX	.	GT	./.
chr2	101885707	.	T	.	.	LowGQX	END=101885710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101885711	.	C	.	.	LowGQX	.	GT	./.
chr2	101885712	.	A	.	.	LowGQX	END=101885730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101885731	.	A	.	.	LowGQX	.	GT	./.
chr2	101885732	.	A	.	.	LowGQX	END=101885877;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101889398	.	A	.	.	LowGQX	END=101889511	GT	./.
chr2	101889737	.	C	.	.	LowGQX	END=101889836	GT	./.
chr2	101893612	.	A	.	.	LowGQX	END=101893771	GT	./.
chr2	101898319	.	A	.	.	LowGQX	END=101898392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101898393	.	A	.	.	LowGQX	END=101898408	GT	./.
chr2	101898409	.	G	.	.	LowGQX	END=101898411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101898412	.	G	C	7.08	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.08;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:36,3,0:60:3:1.000
chr2	101898413	.	T	.	.	LowGQX	END=101898444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101898445	.	A	.	.	LowGQX	.	GT	./.
chr2	101898446	.	C	.	.	LowGQX	END=101898455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101898456	.	C	.	.	LowGQX	.	GT	./.
chr2	101898457	.	A	.	.	LowGQX	END=101898461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101898462	.	G	.	.	LowGQX	.	GT	./.
chr2	101898463	.	A	.	.	LowGQX	END=101898500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101898501	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	101898502	.	T	.	.	LowGQX	END=101898511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101898512	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	101898513	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	101898514	.	C	.	.	LowGQX	END=101898520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101898521	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	101902541	.	A	.	.	LowGQX	END=101902641	GT	./.
chr2	101905427	.	G	.	.	LowGQX	END=101905526	GT	./.
chr2	101910461	.	C	.	.	LowGQX	END=101910498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101910499	.	G	.	.	LowGQX	END=101910542	GT	./.
chr2	101910543	.	C	.	.	LowGQX	END=101910551;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101910552	.	A	.	.	LowGQX	.	GT	./.
chr2	101910553	.	G	.	.	LowGQX	END=101910554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101910555	.	A	.	.	LowGQX	END=101910556	GT	./.
chr2	101910557	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101910558	.	A	.	.	LowGQX	.	GT	./.
chr2	101910559	.	T	.	.	LowGQX	END=101910560;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911391	.	A	.	.	LowGQX	END=101911392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911393	.	C	.	.	LowGQX	END=101911394	GT	./.
chr2	101911395	.	G	.	.	LowGQX	END=101911406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911407	.	G	.	.	LowGQX	.	GT	./.
chr2	101911408	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911409	.	G	.	.	LowGQX	.	GT	./.
chr2	101911410	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911411	.	G	.	.	LowGQX	.	GT	./.
chr2	101911412	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911413	.	C	.	.	LowGQX	.	GT	./.
chr2	101911414	.	A	.	.	LowGQX	END=101911420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911421	.	A	.	.	LowGQX	.	GT	./.
chr2	101911422	.	G	.	.	LowGQX	END=101911435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911436	.	T	.	.	LowGQX	END=101911521	GT	./.
chr2	101911522	.	C	.	.	LowGQX	END=101911556;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911557	.	T	.	.	LowGQX	.	GT	./.
chr2	101911558	.	C	.	.	LowGQX	END=101911559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911560	.	T	.	.	LowGQX	.	GT	./.
chr2	101911561	.	T	.	.	LowGQX	END=101911568;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911569	.	T	.	.	LowGQX	.	GT	./.
chr2	101911570	.	T	.	.	LowGQX	END=101911581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911582	.	C	.	.	LowGQX	END=101911584	GT	./.
chr2	101911585	.	C	.	.	LowGQX	END=101911598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911599	.	T	.	.	LowGQX	.	GT	./.
chr2	101911600	.	T	.	.	LowGQX	END=101911604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911605	.	T	.	.	LowGQX	.	GT	./.
chr2	101911606	.	T	.	.	LowGQX	END=101911611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911612	.	G	.	.	LowGQX	.	GT	./.
chr2	101911613	.	C	.	.	LowGQX	END=101911625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911626	.	C	.	.	LowGQX	.	GT	./.
chr2	101911627	.	C	.	.	LowGQX	END=101911634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911635	.	T	.	.	LowGQX	.	GT	./.
chr2	101911636	.	T	.	.	LowGQX	END=101911637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911638	.	C	.	.	LowGQX	.	GT	./.
chr2	101911639	.	T	.	.	LowGQX	END=101911641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911642	.	T	.	.	LowGQX	.	GT	./.
chr2	101911643	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101911644	.	C	.	.	LowGQX	.	GT	./.
chr2	101911645	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101924589	.	A	.	.	LowGQX	END=101924591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101924592	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	101924593	.	G	.	.	LowGQX	END=101924606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101924607	.	C	.	.	LowGQX	END=101924608	GT	./.
chr2	101924609	.	A	.	.	LowGQX	END=101924614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101924615	.	T	.	.	LowGQX	.	GT	./.
chr2	101924616	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	101924617	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101924618	.	T	.	.	LowGQX	.	GT	./.
chr2	101924619	.	C	.	.	LowGQX	END=101924621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101924622	.	G	.	.	LowGQX	END=101924623	GT	./.
chr2	101924624	.	A	.	.	LowGQX	END=101924632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101924633	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	101924634	.	A	.	.	LowGQX	END=101924642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101924643	.	G	.	.	LowGQX	.	GT	./.
chr2	101924644	.	A	.	.	LowGQX	END=101924651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101924652	.	C	.	.	LowGQX	.	GT	./.
chr2	101924653	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101924654	.	A	.	.	LowGQX	END=101924655	GT	./.
chr2	101924656	.	G	.	.	LowGQX	END=101924658;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101924659	.	T	.	.	LowGQX	.	GT	./.
chr2	101924660	.	T	.	.	LowGQX	END=101924684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	101924685	.	G	.	.	LowGQX	.	GT	./.
chr2	101924686	.	T	.	.	LowGQX	END=101924693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101924694	.	G	.	.	LowGQX	END=101925052	GT	./.
chr2	101967383	.	C	.	.	LowGQX	END=101967398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101967399	.	G	.	.	LowGQX	.	GT	./.
chr2	101967400	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101967401	.	A	.	.	LowGQX	.	GT	./.
chr2	101967402	.	C	.	.	LowGQX	END=101967428;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	101967429	.	T	.	.	LowGQX	END=101967534	GT	./.
chr2	101971713	.	A	.	.	LowGQX	END=101971830	GT	./.
chr2	101999982	.	A	.	.	LowGQX	END=102000166	GT	./.
chr2	102003477	.	A	.	.	LowGQX	END=102003921	GT	./.
chr2	102014009	.	C	.	.	PASS	END=102014051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:99:60
chr2	102014052	.	G	.	.	PASS	END=102014184;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr2	102014185	.	A	.	.	PASS	END=102014186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	102018897	.	C	.	.	PASS	END=102018907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:48:60
chr2	102018908	.	A	G	197.96	PASS	BaseQRankSum=-0.582;DP=25;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.9469;MQ=60;MQ0=0;MQRankSum=0.361;QD=7.92;ReadPosRankSum=-0.083;SB=-107.35	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:15,10:25:99:228,0,452:60:99:0.400
chr2	102018909	.	T	.	.	PASS	END=102018954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:51:60
chr2	102018955	.	C	.	.	PASS	END=102018956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr2	102018957	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:26:38:60
chr2	102018958	.	A	.	.	PASS	END=102018974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:60:60
chr2	102018975	.	C	.	.	PASS	END=102018986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr2	102018987	.	G	.	.	PASS	END=102019001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	102019002	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:45:60
chr2	102019003	.	C	.	.	PASS	END=102019028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:60
chr2	102019029	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:60:60
chr2	102019030	.	C	.	.	PASS	END=102019114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr2	102019115	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:65:60
chr2	102019116	.	C	.	.	PASS	END=102019136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr2	102019137	.	C	.	.	PASS	END=102019157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	102019158	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:32:53:60
chr2	102019159	.	C	.	.	PASS	END=102019175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	102019176	.	T	.	.	PASS	END=102019194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	102019195	.	G	.	.	PASS	END=102019205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:60
chr2	102019206	.	G	.	.	PASS	END=102019214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	102022404	.	C	.	.	PASS	END=102022421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:72:60
chr2	102022422	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:42:60
chr2	102022423	.	A	.	.	PASS	END=102022429;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr2	102022430	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:60:60
chr2	102022431	.	A	.	.	PASS	END=102022438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:96:60
chr2	102022439	.	G	.	.	PASS	END=102022453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	102022454	.	A	.	.	PASS	END=102022519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:60
chr2	102027078	.	T	.	.	PASS	END=102027102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:96:60
chr2	102027103	.	T	.	.	PASS	END=102027116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	102027117	.	G	.	.	PASS	END=102027177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	102029376	.	C	.	.	PASS	END=102029392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr2	102029393	.	G	.	.	PASS	END=102029511;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:60
chr2	102029512	.	T	.	.	PASS	END=102029533;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:60
chr2	102029534	.	C	.	.	PASS	END=102029540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	102029541	.	T	.	.	PASS	END=102029547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	102029548	.	G	A	1151.88	PASS	BaseQRankSum=2.314;DP=97;Dels=0.00;FS=5.660;HRun=1;HaplotypeScore=2.8408;MQ=60;MQ0=0;MQRankSum=-0.256;QD=11.88;ReadPosRankSum=-0.769;SB=-418.89	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:50,47:97:99:1182,0,1296:60:99:0.485
chr2	102029549	.	A	.	.	PASS	END=102029559;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	102029560	.	T	.	.	PASS	END=102029565;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	102031295	.	A	.	.	PASS	END=102031386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:272:99:60
chr2	102031387	.	A	.	.	PASS	END=102031394;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr2	102033995	.	C	.	.	PASS	END=102034043;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr2	102034044	.	T	.	.	PASS	END=102034146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:316:99:60
chr2	102035260	.	T	.	.	PASS	END=102035283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	102035284	.	A	.	.	PASS	END=102035303;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr2	102035304	.	T	.	.	PASS	END=102035426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr2	102038157	.	C	.	.	PASS	END=102038256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	102038823	.	C	.	.	PASS	END=102038848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	102038849	.	T	A	3464.15	PASS	DP=100;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=34.64;SB=-881.06	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,100:100:99:3464,265,0:60:99:1.000
chr2	102038850	.	G	.	.	PASS	END=102038891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	102038892	.	G	.	.	PASS	END=102038934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	102045400	.	T	.	.	LowGQX	END=102045499	GT	./.
chr2	102067049	.	T	.	.	LowGQX	END=102067148	GT	./.
chr2	102068768	.	G	.	.	LowGQX	END=102068927	GT	./.
chr2	102083188	.	T	.	.	PASS	END=102083206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	102083207	.	G	.	.	PASS	END=102083228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	102083229	.	A	.	.	PASS	END=102083332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	102083333	.	T	.	.	PASS	END=102083358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	102083359	.	C	.	.	PASS	END=102083362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	102090591	.	G	.	.	LowGQX	END=102090750	GT	./.
chr2	102314462	.	C	.	.	LowGQX	END=102314620	GT	./.
chr2	102314864	.	A	.	.	LowGQX	END=102314910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102314911	.	A	.	.	LowGQX	.	GT	./.
chr2	102314912	.	C	.	.	LowGQX	END=102314934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102314935	.	G	.	.	LowGQX	.	GT	./.
chr2	102314936	.	A	.	.	LowGQX	END=102314967;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102314968	.	G	.	.	LowGQX	END=102315017	GT	./.
chr2	102407160	.	A	.	.	LowGQX	END=102407259	GT	./.
chr2	102413725	.	A	.	.	LowGQX	END=102413845	GT	./.
chr2	102440389	.	G	.	.	LowGQX	END=102440515	GT	./.
chr2	102441780	.	G	.	.	LowGQX	END=102441891	GT	./.
chr2	102445961	.	T	.	.	LowGQX	END=102446060	GT	./.
chr2	102448122	.	A	.	.	LowGQX	END=102448233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102448234	.	C	.	.	LowGQX	.	GT	./.
chr2	102448235	.	G	.	.	LowGQX	END=102448249;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102448250	.	C	.	.	LowGQX	.	GT	./.
chr2	102448251	.	T	.	.	LowGQX	END=102448288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102448289	.	C	.	.	LowGQX	.	GT	./.
chr2	102448290	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102448291	.	C	.	.	LowGQX	.	GT	./.
chr2	102448292	.	A	.	.	LowGQX	END=102448296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102448297	.	C	.	.	LowGQX	END=102448298	GT	./.
chr2	102448299	.	A	.	.	LowGQX	END=102448313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102450788	.	A	.	.	LowGQX	END=102450850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	102450851	.	G	.	.	LowGQX	END=102450947	GT	./.
chr2	102452351	.	C	.	.	LowGQX	END=102452374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102452375	.	G	.	.	LowGQX	.	GT	./.
chr2	102452376	.	C	.	.	LowGQX	END=102452399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102452400	.	A	.	.	LowGQX	END=102452450	GT	./.
chr2	102456280	.	G	.	.	LowGQX	END=102456456	GT	./.
chr2	102459057	.	C	.	.	LowGQX	END=102459156	GT	./.
chr2	102460562	.	G	.	.	LowGQX	END=102460773	GT	./.
chr2	102472438	.	G	.	.	LowGQX	END=102472600	GT	./.
chr2	102475451	.	G	.	.	LowGQX	END=102475550	GT	./.
chr2	102476104	.	G	.	.	LowGQX	END=102476215	GT	./.
chr2	102476216	.	C	.	.	LowGQX	END=102476222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102476223	.	A	.	.	LowGQX	END=102476224	GT	./.
chr2	102476225	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102476226	.	A	.	.	LowGQX	.	GT	./.
chr2	102476227	.	C	.	.	LowGQX	END=102476230;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102476231	.	C	.	.	LowGQX	END=102476232	GT	./.
chr2	102476233	.	G	.	.	LowGQX	END=102476238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102476239	.	G	.	.	LowGQX	END=102476242	GT	./.
chr2	102476243	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102476244	.	C	.	.	LowGQX	.	GT	./.
chr2	102476245	.	A	.	.	LowGQX	END=102476246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102476247	.	C	.	.	LowGQX	.	GT	./.
chr2	102476248	.	G	.	.	LowGQX	END=102476256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102476257	.	A	.	.	LowGQX	.	GT	./.
chr2	102476258	.	A	.	.	LowGQX	END=102476264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102476265	.	A	.	.	LowGQX	.	GT	./.
chr2	102476266	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102476267	.	C	.	.	LowGQX	.	GT	./.
chr2	102476268	.	C	.	.	LowGQX	END=102476284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102476285	.	G	.	.	LowGQX	.	GT	./.
chr2	102476286	.	A	.	.	LowGQX	END=102476292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102476293	.	A	.	.	LowGQX	.	GT	./.
chr2	102476294	.	G	.	.	LowGQX	END=102476300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102476301	.	A	.	.	LowGQX	END=102476303	GT	./.
chr2	102476304	.	A	.	.	LowGQX	END=102476307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102476308	.	T	.	.	LowGQX	.	GT	./.
chr2	102476309	.	G	.	.	LowGQX	END=102476332;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	102476333	.	T	.	.	LowGQX	.	GT	./.
chr2	102476334	.	C	.	.	LowGQX	END=102476337;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	102476338	.	C	.	.	LowGQX	.	GT	./.
chr2	102476339	.	C	.	.	LowGQX	END=102476342;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	102476343	.	G	.	.	LowGQX	.	GT	./.
chr2	102476344	.	T	.	.	LowGQX	END=102476352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	102476353	.	C	.	.	LowGQX	.	GT	./.
chr2	102476354	.	A	.	.	LowGQX	END=102476361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	102476362	.	G	.	.	LowGQX	.	GT	./.
chr2	102476363	.	G	.	.	LowGQX	END=102476366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	102476367	.	G	.	.	LowGQX	END=102476368	GT	./.
chr2	102476369	.	C	.	.	LowGQX	END=102476375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102476376	.	C	.	.	LowGQX	.	GT	./.
chr2	102476377	.	G	.	.	LowGQX	END=102476380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102476381	.	C	.	.	LowGQX	END=102476383	GT	./.
chr2	102476384	.	C	.	.	LowGQX	END=102476391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102476392	.	T	.	.	LowGQX	.	GT	./.
chr2	102476393	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102476394	.	T	.	.	LowGQX	.	GT	./.
chr2	102476395	.	C	.	.	LowGQX	END=102476399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102476400	.	G	.	.	LowGQX	.	GT	./.
chr2	102476401	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102477286	.	G	.	.	LowGQX	END=102477448	GT	./.
chr2	102480282	.	G	.	.	LowGQX	END=102480513	GT	./.
chr2	102481391	.	G	.	.	LowGQX	END=102481498	GT	./.
chr2	102482889	.	G	.	.	LowGQX	END=102483041	GT	./.
chr2	102483673	.	G	.	.	LowGQX	END=102483756	GT	./.
chr2	102483757	.	C	.	.	LowGQX	END=102483780;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102484445	.	A	.	.	LowGQX	END=102484481	GT	./.
chr2	102484482	.	G	.	.	LowGQX	END=102484544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102486072	.	C	.	.	LowGQX	END=102486259	GT	./.
chr2	102486756	.	G	.	.	LowGQX	END=102486877	GT	./.
chr2	102487955	.	G	.	.	LowGQX	END=102487974;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102487975	.	G	T	3.07	LowGQ;LowGQX;LowQD;SB	BaseQRankSum=0.804;DP=2;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.804;QD=1.54;ReadPosRankSum=0.804;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:1,1:2:25.53:30,0,26:60:3:0.500
chr2	102487976	.	T	.	.	LowGQX	END=102488086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102488087	.	C	.	.	LowGQX	.	GT	./.
chr2	102488088	.	A	.	.	LowGQX	END=102488091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102488092	.	A	.	.	LowGQX	END=102488093	GT	./.
chr2	102488094	.	C	.	.	LowGQX	END=102488098;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102488099	.	A	.	.	LowGQX	.	GT	./.
chr2	102488100	.	C	.	.	LowGQX	END=102488102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102488103	.	A	.	.	LowGQX	.	GT	./.
chr2	102488104	.	C	.	.	LowGQX	END=102488105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102488106	.	A	.	.	LowGQX	.	GT	./.
chr2	102488107	.	T	.	.	LowGQX	END=102488108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102488109	.	T	.	.	LowGQX	.	GT	./.
chr2	102488110	.	C	.	.	LowGQX	END=102488113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102488114	.	A	.	.	LowGQX	.	GT	./.
chr2	102488115	.	C	.	.	LowGQX	END=102488116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102488117	.	G	.	.	LowGQX	END=102488147	GT	./.
chr2	102490108	.	G	.	.	LowGQX	END=102490226	GT	./.
chr2	102490543	.	G	.	.	LowGQX	END=102490571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	102490572	.	A	.	.	LowGQX	END=102490714	GT	./.
chr2	102493464	.	G	.	.	LowGQX	END=102493540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102493541	.	T	.	.	LowGQX	.	GT	./.
chr2	102493542	.	A	.	.	LowGQX	END=102493583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102493584	.	T	.	.	LowGQX	.	GT	./.
chr2	102493585	.	T	.	.	LowGQX	END=102493608;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102499012	.	G	.	.	LowGQX	END=102499147	GT	./.
chr2	102501648	.	G	.	.	LowGQX	END=102501711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102501712	.	G	.	.	LowGQX	.	GT	./.
chr2	102501713	.	G	.	.	LowGQX	END=102501736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102501737	.	T	.	.	LowGQX	.	GT	./.
chr2	102501738	.	A	.	.	LowGQX	END=102501748;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102501749	.	G	.	.	LowGQX	.	GT	./.
chr2	102503549	.	G	.	.	LowGQX	END=102503723	GT	./.
chr2	102504239	.	G	.	.	LowGQX	END=102504399	GT	./.
chr2	102505257	.	G	.	.	LowGQX	END=102505397	GT	./.
chr2	102507620	.	T	.	.	LowGQX	END=102507702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	102507703	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	102507704	.	G	.	.	LowGQX	END=102507708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	102507709	.	T	.	.	LowGQX	.	GT	./.
chr2	102507710	.	A	.	.	LowGQX	END=102507719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	102509222	.	T	.	.	LowGQX	END=102509278	GT	./.
chr2	102509279	.	C	.	.	LowGQX	END=102509464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102509465	.	T	.	.	LowGQX	END=102509804	GT	./.
chr2	102625022	.	G	.	.	LowGQX	END=102625097	GT	./.
chr2	102625098	.	C	.	.	LowGQX	END=102625121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102626022	.	A	.	.	LowGQX	END=102626290	GT	./.
chr2	102632331	.	A	.	.	LowGQX	END=102632515	GT	./.
chr2	102636098	.	A	.	.	LowGQX	END=102636276	GT	./.
chr2	102638631	.	T	.	.	LowGQX	END=102638730	GT	./.
chr2	102640993	.	A	.	.	LowGQX	END=102641134	GT	./.
chr2	102642571	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102642572	.	G	.	.	LowGQX	.	GT	./.
chr2	102642573	.	G	.	.	LowGQX	END=102642717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102644686	.	A	.	.	LowGQX	END=102644856	GT	./.
chr2	102774113	.	T	.	.	PASS	END=102774229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr2	102774230	.	T	.	.	PASS	END=102774261;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	102774262	.	T	.	.	PASS	END=102774265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	102781232	.	A	.	.	PASS	END=102781364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	102781365	.	C	.	.	PASS	END=102781470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr2	102781573	.	A	.	.	PASS	END=102781648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr2	102781649	.	C	G	2765.93	PASS	BaseQRankSum=4.227;DP=187;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=19.9885;MQ=60;MQ0=0;MQRankSum=-1.267;QD=14.79;ReadPosRankSum=0.563;SB=-845.23	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:87,98:187:99:2796,0,2255:60:99:0.530
chr2	102781650	.	A	.	.	PASS	END=102781714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	102781715	.	A	.	.	PASS	END=102781765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:60
chr2	102781766	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:95:99:60
chr2	102782571	.	A	.	.	PASS	END=102782602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:99:60
chr2	102782603	.	C	.	.	PASS	END=102782661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:99:60
chr2	102782662	.	G	.	.	PASS	END=102782716;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:99:60
chr2	102782717	.	C	.	.	PASS	END=102782743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	102785041	.	G	.	.	PASS	END=102785128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	102785129	.	T	.	.	PASS	END=102785140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:87:60
chr2	102788259	.	A	.	.	PASS	END=102788297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:84:60
chr2	102788298	.	G	.	.	PASS	END=102788364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	102788365	.	G	.	.	PASS	END=102788380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:60
chr2	102789145	.	A	.	.	PASS	END=102789271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:286:99:60
chr2	102789272	.	C	.	.	PASS	END=102789286;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr2	102789287	.	T	.	.	PASS	END=102789300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr2	102791045	.	A	.	.	PASS	END=102791066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:75:60
chr2	102791067	.	A	.	.	PASS	END=102791073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr2	102791074	.	G	.	.	PASS	END=102791096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	102791097	.	A	.	.	PASS	END=102791192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	102791936	.	A	.	.	PASS	END=102791944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	102791945	.	T	.	.	PASS	END=102791956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	102791957	.	T	.	.	PASS	END=102791961;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	102791962	.	C	.	.	PASS	END=102791969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:78:60
chr2	102791970	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:48:60
chr2	102791971	.	T	.	.	PASS	END=102791975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:60
chr2	102791976	.	C	.	.	PASS	END=102791977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:62:60
chr2	102791978	.	A	.	.	PASS	END=102792091;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:84:60
chr2	102792092	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:50:63:60
chr2	102792093	.	T	.	.	PASS	END=102792112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr2	102792113	.	T	.	.	PASS	END=102792122;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:60
chr2	102792123	.	C	.	.	PASS	END=102792133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:48:60
chr2	102792134	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:17:22:60
chr2	102792135	.	T	.	.	PASS	END=102792146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	102792811	.	A	.	.	PASS	END=102792843;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	102792844	.	G	.	.	PASS	END=102792921;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	102792922	.	A	.	.	PASS	END=102793081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr2	102793082	.	T	.	.	PASS	END=102793217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	102793218	.	A	.	.	PASS	END=102793221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:133:99:60
chr2	102793570	.	A	.	.	LowGQX	END=102793591;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	102793592	.	G	.	.	LowGQX	END=102793601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102793602	.	T	.	.	LowGQX	END=102793729	GT	./.
chr2	102803459	.	T	.	.	LowGQX	END=102803558	GT	./.
chr2	102804302	.	T	.	.	LowGQX	END=102804372;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102804373	.	T	.	.	LowGQX	.	GT	./.
chr2	102804374	.	C	.	.	LowGQX	END=102804397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102804398	.	T	.	.	LowGQX	END=102804401	GT	./.
chr2	102805534	.	A	.	.	LowGQX	END=102805772	GT	./.
chr2	102808373	.	T	.	.	LowGQX	END=102808582	GT	./.
chr2	102818014	.	A	.	.	LowGQX	END=102818039	GT	./.
chr2	102818040	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102818041	.	G	.	.	LowGQX	.	GT	./.
chr2	102818042	.	G	.	.	LowGQX	END=102818044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102818045	.	C	.	.	LowGQX	.	GT	./.
chr2	102818046	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102818047	.	C	.	.	LowGQX	.	GT	./.
chr2	102818048	.	T	.	.	LowGQX	END=102818059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102818060	.	C	.	.	LowGQX	END=102818061	GT	./.
chr2	102818062	.	G	.	.	LowGQX	END=102818063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102818064	.	C	.	.	LowGQX	END=102818065	GT	./.
chr2	102818066	.	T	.	.	LowGQX	END=102818071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102818072	.	G	.	.	LowGQX	.	GT	./.
chr2	102818073	.	A	.	.	LowGQX	END=102818083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102818084	.	G	.	.	LowGQX	.	GT	./.
chr2	102818085	.	G	.	.	LowGQX	END=102818090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102818091	.	G	.	.	LowGQX	.	GT	./.
chr2	102818092	.	A	.	.	LowGQX	END=102818093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102818094	.	A	.	.	LowGQX	.	GT	./.
chr2	102818095	.	G	.	.	LowGQX	END=102818112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102818113	.	A	.	.	LowGQX	.	GT	./.
chr2	102818114	.	A	.	.	LowGQX	END=102818115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102818116	.	C	.	.	LowGQX	.	GT	./.
chr2	102818117	.	C	.	.	LowGQX	END=102818120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102818121	.	C	.	.	LowGQX	.	GT	./.
chr2	102818122	.	T	.	.	LowGQX	END=102818125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102818126	.	A	.	.	LowGQX	END=102818129	GT	./.
chr2	102818130	.	T	.	.	LowGQX	END=102818138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102818139	.	C	.	.	LowGQX	.	GT	./.
chr2	102818140	.	A	.	.	LowGQX	END=102818150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102818151	.	T	.	.	LowGQX	.	GT	./.
chr2	102818152	.	T	.	.	LowGQX	END=102818157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102818158	.	G	.	.	LowGQX	.	GT	./.
chr2	102818159	.	C	.	.	LowGQX	END=102818168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102818169	.	A	.	.	LowGQX	END=102818170	GT	./.
chr2	102818171	.	C	.	.	LowGQX	END=102818173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102818174	.	T	.	.	LowGQX	.	GT	./.
chr2	102818175	.	A	.	.	LowGQX	END=102818176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102818177	.	T	.	.	LowGQX	.	GT	./.
chr2	102828548	.	A	.	.	LowGQX	END=102828647	GT	./.
chr2	102835411	.	A	.	.	LowGQX	END=102835414;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102835415	.	A	.	.	LowGQX	.	GT	./.
chr2	102835416	.	C	.	.	LowGQX	END=102835425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102835426	.	T	.	.	LowGQX	END=102835477	GT	./.
chr2	102835478	.	A	.	.	LowGQX	END=102835504;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102835505	.	T	.	.	LowGQX	.	GT	./.
chr2	102835506	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102835507	.	C	.	.	LowGQX	.	GT	./.
chr2	102835508	.	T	.	.	LowGQX	END=102835519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102835520	.	A	.	.	LowGQX	.	GT	./.
chr2	102835521	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102835522	.	A	.	.	LowGQX	.	GT	./.
chr2	102835523	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102835524	.	G	.	.	LowGQX	.	GT	./.
chr2	102835525	.	A	.	.	LowGQX	END=102835542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102835543	.	G	.	.	LowGQX	.	GT	./.
chr2	102835544	.	T	.	.	LowGQX	END=102835558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102835559	.	T	.	.	LowGQX	.	GT	./.
chr2	102835560	.	T	.	.	LowGQX	END=102835590;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102836339	.	A	.	.	LowGQX	END=102836479	GT	./.
chr2	102842356	.	A	.	.	LowGQX	END=102842490	GT	./.
chr2	102842491	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102842492	.	A	.	.	LowGQX	.	GT	./.
chr2	102842493	.	C	.	.	LowGQX	END=102842503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102849421	.	A	.	.	LowGQX	END=102849432	GT	./.
chr2	102849433	.	G	.	.	LowGQX	END=102849437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102849438	.	A	.	.	LowGQX	.	GT	./.
chr2	102849439	.	C	.	.	LowGQX	END=102849458;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102849459	.	A	.	.	LowGQX	.	GT	./.
chr2	102849460	.	G	.	.	LowGQX	END=102849500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102849501	.	T	.	.	LowGQX	.	GT	./.
chr2	102849502	.	G	.	.	LowGQX	END=102849521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102849522	.	T	.	.	LowGQX	.	GT	./.
chr2	102849523	.	G	.	.	LowGQX	END=102849525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102849526	.	G	.	.	LowGQX	.	GT	./.
chr2	102849527	.	G	.	.	LowGQX	END=102849528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102849529	.	G	.	.	LowGQX	.	GT	./.
chr2	102849530	.	A	.	.	LowGQX	END=102849531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102849532	.	A	.	.	LowGQX	.	GT	./.
chr2	102849533	.	C	.	.	LowGQX	END=102849540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102849541	.	A	.	.	LowGQX	.	GT	./.
chr2	102849542	.	T	.	.	LowGQX	END=102849543;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102849544	.	T	.	.	LowGQX	.	GT	./.
chr2	102849545	.	A	.	.	LowGQX	END=102849547;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102849548	.	T	.	.	LowGQX	.	GT	./.
chr2	102849549	.	T	.	.	LowGQX	END=102849555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102849556	.	A	.	.	LowGQX	END=102849557	GT	./.
chr2	102849558	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102849559	.	C	.	.	LowGQX	.	GT	./.
chr2	102849560	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102849561	.	G	.	.	LowGQX	.	GT	./.
chr2	102849562	.	C	.	.	LowGQX	END=102849567;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102849568	.	T	.	.	LowGQX	END=102849569	GT	./.
chr2	102849570	.	A	.	.	LowGQX	END=102849576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102849577	.	T	.	.	LowGQX	END=102849578	GT	./.
chr2	102849579	.	G	.	.	LowGQX	END=102849583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102849584	.	G	.	.	LowGQX	END=102849586	GT	./.
chr2	102851355	.	A	.	.	LowGQX	END=102851739	GT	./.
chr2	102855627	.	G	.	.	LowGQX	END=102855726	GT	./.
chr2	102954706	.	C	.	.	PASS	END=102954763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	102954764	.	T	.	.	PASS	END=102954793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	102954794	.	T	.	.	PASS	END=102954805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	102955295	.	A	.	.	PASS	END=102955365;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	102955366	.	A	.	.	PASS	END=102955491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr2	102955492	.	C	.	.	PASS	END=102955508;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	102955509	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:137:99:60
chr2	102956556	.	A	.	.	PASS	END=102956563;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	102956564	.	A	.	.	PASS	END=102956571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr2	102956572	.	G	.	.	PASS	END=102956583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr2	102956584	.	C	.	.	PASS	END=102956710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:60
chr2	102956711	.	A	.	.	PASS	END=102956727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:175:99:60
chr2	102956728	.	T	.	.	PASS	END=102956735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	102956736	.	A	.	.	PASS	END=102956765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	102957094	.	T	.	.	PASS	END=102957137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	102957138	.	C	.	.	PASS	END=102957150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:188:99:60
chr2	102957151	.	G	.	.	PASS	END=102957290;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:60
chr2	102957647	.	G	.	.	LowGQX	END=102957662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	102957663	.	T	.	6.90	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.02:60:0
chr2	102957664	.	C	.	.	LowGQX	END=102957665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	102957666	.	G	.	42.02	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.03:60:12
chr2	102957667	.	C	.	.	LowGQX	END=102957677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:12:60
chr2	102957678	.	A	.	.	LowGQX	END=102957696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	102957697	.	T	.	.	LowGQX	END=102957704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102957705	.	G	.	.	LowGQX	END=102957707	GT	./.
chr2	102957708	.	T	.	.	LowGQX	END=102957711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102957712	.	A	.	.	LowGQX	.	GT	./.
chr2	102957713	.	A	.	.	LowGQX	END=102957714;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102957715	.	T	.	.	LowGQX	END=102957716	GT	./.
chr2	102957717	.	T	.	.	LowGQX	END=102957718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102957719	.	A	.	.	LowGQX	END=102957720	GT	./.
chr2	102957721	.	G	.	.	LowGQX	END=102957725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102957726	.	G	.	.	LowGQX	.	GT	./.
chr2	102957727	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102957728	.	T	.	.	LowGQX	.	GT	./.
chr2	102957729	.	T	.	.	LowGQX	END=102957730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102957731	.	G	.	.	LowGQX	.	GT	./.
chr2	102957732	.	T	.	.	LowGQX	END=102957735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102957736	.	G	.	.	LowGQX	END=102957737	GT	./.
chr2	102957738	.	T	.	.	LowGQX	END=102957747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102957748	.	T	.	.	LowGQX	END=102957778	GT	./.
chr2	102957779	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102957780	.	T	.	.	LowGQX	.	GT	./.
chr2	102957781	.	T	.	.	LowGQX	END=102957784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102957785	.	T	.	.	LowGQX	.	GT	./.
chr2	102957786	.	T	.	.	LowGQX	END=102957788;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102957789	.	A	.	.	LowGQX	.	GT	./.
chr2	102957790	.	A	.	.	LowGQX	END=102957793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102957794	.	T	.	.	LowGQX	END=102957795	GT	./.
chr2	102957796	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102957797	.	C	.	.	LowGQX	.	GT	./.
chr2	102957798	.	A	.	.	LowGQX	END=102957799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102957800	.	C	.	.	LowGQX	.	GT	./.
chr2	102957801	.	A	.	.	LowGQX	END=102957809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102957810	.	G	.	.	LowGQX	END=102957812	GT	./.
chr2	102957813	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102957814	.	T	.	.	LowGQX	END=102957816	GT	./.
chr2	102957817	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	102958669	.	T	.	.	PASS	END=102958768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	102959494	.	A	.	.	PASS	END=102959557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	102959558	.	G	.	.	PASS	END=102959639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	102959728	.	A	.	.	PASS	END=102959826;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	102959827	.	T	.	.	PASS	END=102959857;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	102959858	.	T	.	.	PASS	END=102959894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	102964403	.	A	.	.	PASS	END=102964454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	102964455	.	A	.	.	PASS	END=102964517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:60
chr2	102964518	.	A	.	.	PASS	END=102964526;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	102964527	.	G	.	.	PASS	END=102964553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	102965537	.	A	.	.	PASS	END=102965554;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	102965555	.	T	.	.	PASS	END=102965584;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr2	102965585	.	A	.	.	PASS	END=102965704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:202:99:60
chr2	102965705	.	A	.	.	PASS	END=102965708;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:60
chr2	102967994	.	A	.	.	PASS	END=102968006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	102968007	.	G	A	3305.81	PASS	BaseQRankSum=3.528;DP=195;Dels=0.00;FS=6.745;HRun=0;HaplotypeScore=9.6597;MQ=60;MQ0=0;MQRankSum=-0.300;QD=16.95;ReadPosRankSum=1.108;SB=-1595.79	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:73,122:195:99:3306,0,1787:60:99:0.626
chr2	102968008	.	C	.	.	PASS	END=102968074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr2	102968075	.	T	C	3660.91	PASS	BaseQRankSum=0.498;DP=242;Dels=0.00;FS=1.650;HRun=0;HaplotypeScore=7.6281;MQ=60;MQ0=0;MQRankSum=0.267;QD=15.13;ReadPosRankSum=-0.393;SB=-2176.06	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:95,147:242:99:3661,0,2261:60:99:0.607
chr2	102968076	.	A	.	.	PASS	END=102968150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr2	102968151	.	G	.	.	PASS	END=102968210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:200:99:60
chr2	102968211	.	C	A	3166.69	PASS	BaseQRankSum=3.278;DP=222;Dels=0.00;FS=3.958;HRun=1;HaplotypeScore=7.6808;MQ=60;MQ0=0;MQRankSum=1.374;QD=14.26;ReadPosRankSum=-0.411;SB=-1530.38	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:112,110:222:99:3197,0,2880:60:99:0.495
chr2	102968212	.	A	G	3130.41	PASS	BaseQRankSum=0.321;DP=221;Dels=0.00;FS=3.990;HRun=1;HaplotypeScore=9.6274;MQ=60;MQ0=0;MQRankSum=-1.598;QD=14.16;ReadPosRankSum=-0.287;SB=-1460.63	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:110,110:221:99:3160,0,2847:60:99:0.500
chr2	102968213	.	G	.	.	PASS	END=102968284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:99:60
chr2	102968285	.	T	C	2440.87	PASS	BaseQRankSum=-1.146;DP=201;Dels=0.00;FS=1.827;HRun=1;HaplotypeScore=16.1499;MQ=60;MQ0=0;MQRankSum=-0.297;QD=12.14;ReadPosRankSum=-0.542;SB=-1284.35	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:102,99:201:99:2471,0,2596:60:99:0.493
chr2	102968286	.	A	.	.	PASS	END=102968355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:60
chr2	102968356	.	C	T	2348.10	PASS	BaseQRankSum=3.921;DP=195;Dels=0.00;FS=3.596;HRun=1;HaplotypeScore=18.0340;MQ=60;MQ0=0;MQRankSum=-1.563;QD=12.04;ReadPosRankSum=0.187;SB=-1101.87	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:99,95:195:99:2378,0,2487:60:99:0.490
chr2	102968357	.	T	.	.	PASS	END=102968361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	102968362	.	T	C	2317.32	PASS	BaseQRankSum=0.930;DP=187;Dels=0.00;FS=2.079;HRun=0;HaplotypeScore=21.8744;MQ=60;MQ0=0;MQRankSum=0.889;QD=12.39;ReadPosRankSum=-0.161;SB=-819.67	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:95,90:187:99:2347,0,2442:60:99:0.486
chr2	102968363	.	G	.	.	PASS	END=102968383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	102979100	.	A	.	.	PASS	END=102979180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	102979181	.	A	.	.	PASS	END=102979199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:60
chr2	102984283	.	A	.	.	PASS	END=102984302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:60
chr2	102984303	.	C	.	.	PASS	END=102984308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	102984309	.	T	.	.	PASS	END=102984424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	102984425	.	G	.	.	PASS	END=102984466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:60
chr2	102984467	.	T	.	.	PASS	END=102984510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	102984511	.	T	.	.	PASS	END=102984530;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	102988411	.	A	.	.	PASS	END=102988430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:135:99:60
chr2	102988431	.	G	.	.	PASS	END=102988552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	102988553	.	T	.	.	PASS	END=102988573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	102988574	.	A	.	.	PASS	END=102988580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	102988581	.	A	.	.	PASS	END=102988587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	102988588	.	T	.	.	PASS	END=102988600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	102990369	.	A	.	.	LowGQX	END=102990502;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	102992365	.	A	.	.	PASS	END=102992391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	102992392	.	A	.	.	PASS	END=102992517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	102992518	.	T	.	.	PASS	END=102992525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	102998062	.	T	.	.	PASS	END=102998155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	102998156	.	T	.	.	PASS	END=102998161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	103001286	.	T	.	.	PASS	END=103001326;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	103001327	.	A	.	.	PASS	END=103001353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	103001354	.	C	.	.	PASS	END=103001433;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	103001434	.	A	.	.	PASS	END=103001460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	103003279	.	A	.	.	PASS	END=103003313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr2	103003314	.	C	.	.	PASS	END=103003424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr2	103003425	.	G	.	.	PASS	END=103003438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	103003439	.	A	.	.	PASS	END=103003462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	103006514	.	A	.	.	PASS	END=103006542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	103006543	.	T	.	.	PASS	END=103006679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr2	103010927	.	A	.	.	PASS	END=103010999;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:60
chr2	103011000	.	T	.	.	PASS	END=103011068;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	103011069	.	G	.	.	PASS	END=103011085;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	103011086	.	A	.	.	PASS	END=103011089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	103012989	.	A	.	.	PASS	END=103013019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	103013020	.	G	.	.	PASS	END=103013104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	103013105	.	A	.	.	PASS	END=103013235;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	103013236	.	C	.	.	PASS	END=103013320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:60
chr2	103013321	.	T	.	.	PASS	END=103013348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	103039723	.	G	.	.	PASS	END=103039753;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:60
chr2	103039754	.	G	.	.	PASS	END=103039822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	103040269	.	A	.	.	PASS	END=103040298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:99:60
chr2	103040299	.	A	.	.	PASS	END=103040302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	103040303	.	T	.	.	PASS	END=103040398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr2	103040399	.	G	.	.	PASS	END=103040450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr2	103040451	.	G	.	.	PASS	END=103040587;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:60
chr2	103040588	.	A	.	.	PASS	END=103040597;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:218:99:60
chr2	103040689	.	A	.	.	PASS	END=103040799;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:199:99:60
chr2	103040800	.	A	.	.	PASS	END=103040851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	103040852	.	G	.	.	PASS	END=103040875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	103040876	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:108:99:60
chr2	103053670	.	A	.	.	PASS	END=103053762;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr2	103053763	.	C	.	.	PASS	END=103053824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	103057755	.	T	.	.	PASS	END=103057791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	103057792	.	C	.	.	PASS	END=103057842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	103057843	.	C	.	.	PASS	END=103057854;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	103059658	.	A	.	.	PASS	END=103059698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:94:60
chr2	103059699	.	T	.	.	PASS	END=103059758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	103059759	.	A	.	.	PASS	END=103059776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:81:60
chr2	103059777	.	C	.	.	PASS	END=103059827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:87:60
chr2	103061647	.	A	.	.	PASS	END=103061686;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:207:99:60
chr2	103061687	.	A	.	.	PASS	END=103061770;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:60
chr2	103061771	.	A	.	.	PASS	END=103061802;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	103063528	.	A	.	.	PASS	END=103063548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:88:60
chr2	103063549	.	G	.	.	PASS	END=103063583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:99:60
chr2	103063584	.	C	.	.	PASS	END=103063654;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	103063655	.	C	.	.	PASS	END=103063669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:60
chr2	103067306	.	A	.	.	PASS	END=103067327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr2	103067328	.	T	.	.	PASS	END=103067412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:99:60
chr2	103067413	.	C	.	.	PASS	END=103067478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:60
chr2	103067479	.	G	.	.	PASS	END=103067483;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:60
chr2	103068224	.	A	.	.	PASS	END=103068251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	103068252	.	A	.	.	PASS	END=103068412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr2	103068413	.	T	.	.	PASS	END=103068460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:99:60
chr2	103068461	.	A	.	.	PASS	END=103068634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	103068635	.	A	.	.	PASS	END=103068643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	103090217	.	G	.	.	LowGQX	END=103090403	GT	./.
chr2	103090404	.	G	.	.	LowGQX	END=103090476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103095296	.	A	.	.	LowGQX	END=103095739	GT	./.
chr2	103095740	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103095741	.	C	.	.	LowGQX	.	GT	./.
chr2	103095742	.	T	.	.	LowGQX	END=103095751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103095752	.	C	.	.	LowGQX	.	GT	./.
chr2	103095753	.	A	.	.	LowGQX	END=103095760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103095761	.	G	.	.	LowGQX	END=103095762	GT	./.
chr2	103095763	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103119905	.	A	.	.	LowGQX	END=103119915;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103119916	.	A	.	.	LowGQX	END=103120141	GT	./.
chr2	103120142	.	C	.	.	LowGQX	END=103120168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	103121711	.	A	.	.	LowGQX	END=103121932	GT	./.
chr2	103124536	.	A	.	.	LowGQX	END=103124742	GT	./.
chr2	103125300	.	A	.	.	LowGQX	END=103125399	GT	./.
chr2	103128648	.	T	.	.	LowGQX	END=103128695	GT	./.
chr2	103128696	.	T	.	.	LowGQX	END=103128747;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	103130547	.	A	.	.	LowGQX	END=103130712	GT	./.
chr2	103136316	.	A	.	.	LowGQX	END=103136416	GT	./.
chr2	103141481	.	A	.	.	LowGQX	END=103141485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103141486	.	C	.	.	LowGQX	END=103141616	GT	./.
chr2	103142712	.	C	.	.	LowGQX	END=103142811	GT	./.
chr2	103148787	.	A	.	.	LowGQX	END=103148881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103148882	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	103148883	.	A	.	.	LowGQX	END=103149005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103149006	.	T	.	.	LowGQX	.	GT	./.
chr2	103149007	.	G	.	.	LowGQX	END=103149014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103149015	.	T	.	.	LowGQX	.	GT	./.
chr2	103149016	.	G	.	.	LowGQX	END=103149019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103149020	.	A	.	.	LowGQX	END=103149149	GT	./.
chr2	103236306	.	C	.	.	LowGQX	END=103236307;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103236308	.	A	.	.	LowGQX	.	GT	./.
chr2	103236309	.	T	.	.	LowGQX	END=103236355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103236356	.	A	.	.	LowGQX	.	GT	./.
chr2	103236357	.	T	.	.	LowGQX	END=103236367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103236368	.	C	.	.	LowGQX	.	GT	./.
chr2	103236369	.	T	.	.	LowGQX	END=103236379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103236380	.	G	.	.	LowGQX	.	GT	./.
chr2	103236381	.	T	.	.	LowGQX	END=103236397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103236398	.	G	.	.	LowGQX	.	GT	./.
chr2	103236399	.	C	.	.	LowGQX	END=103236400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103236401	.	C	.	.	LowGQX	END=103236407	GT	./.
chr2	103236408	.	A	.	.	LowGQX	END=103236557;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103236558	.	T	.	.	LowGQX	END=103236598	GT	./.
chr2	103274021	.	A	.	.	LowGQX	END=103274488	GT	./.
chr2	103281557	.	A	.	.	LowGQX	END=103281558	GT	./.
chr2	103281559	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103281560	.	T	.	.	LowGQX	.	GT	./.
chr2	103281561	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103281562	.	C	.	.	LowGQX	.	GT	./.
chr2	103281563	.	T	.	.	LowGQX	END=103281588;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103281589	.	C	.	.	LowGQX	.	GT	./.
chr2	103281590	.	A	.	.	LowGQX	END=103281593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	103281594	.	G	.	.	LowGQX	.	GT	./.
chr2	103281595	.	A	.	.	LowGQX	END=103281606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	103281607	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	103281608	.	C	.	.	LowGQX	END=103281629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	103281630	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	103281631	.	G	.	.	LowGQX	END=103281651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103281652	.	A	.	.	LowGQX	.	GT	./.
chr2	103281653	.	T	.	.	LowGQX	END=103281678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103281679	.	T	.	.	LowGQX	.	GT	./.
chr2	103281680	.	T	.	.	LowGQX	END=103281683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103281684	.	C	.	.	LowGQX	.	GT	./.
chr2	103281685	.	T	.	.	LowGQX	END=103281693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103281694	.	G	.	.	LowGQX	.	GT	./.
chr2	103281695	.	C	.	.	LowGQX	END=103281719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103281720	.	T	.	.	LowGQX	END=103281811	GT	./.
chr2	103299718	.	A	.	.	LowGQX	END=103299939	GT	./.
chr2	103300591	.	A	.	.	LowGQX	END=103300713	GT	./.
chr2	103300714	.	C	.	.	LowGQX	END=103300797;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310868	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310869	.	T	.	.	LowGQX	.	GT	./.
chr2	103310870	.	C	.	.	LowGQX	END=103310871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310872	.	G	.	.	LowGQX	END=103310874	GT	./.
chr2	103310875	.	A	.	.	LowGQX	END=103310885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310886	.	G	.	.	LowGQX	.	GT	./.
chr2	103310887	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310888	.	C	.	.	LowGQX	.	GT	./.
chr2	103310889	.	C	.	.	LowGQX	END=103310891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310892	.	T	.	.	LowGQX	END=103310893	GT	./.
chr2	103310894	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310895	.	T	.	.	LowGQX	END=103310896	GT	./.
chr2	103310897	.	G	.	.	LowGQX	END=103310900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310901	.	T	.	.	LowGQX	END=103310902	GT	./.
chr2	103310903	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310904	.	T	.	.	LowGQX	.	GT	./.
chr2	103310905	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310906	.	G	.	.	LowGQX	.	GT	./.
chr2	103310907	.	A	.	.	LowGQX	END=103310908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310909	.	G	.	.	LowGQX	.	GT	./.
chr2	103310910	.	T	.	.	LowGQX	END=103310919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310920	.	C	.	.	LowGQX	.	GT	./.
chr2	103310921	.	A	.	.	LowGQX	END=103310922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310923	.	T	.	.	LowGQX	END=103310924	GT	./.
chr2	103310925	.	A	.	.	LowGQX	END=103310929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310930	.	C	.	.	LowGQX	.	GT	./.
chr2	103310931	.	A	.	.	LowGQX	END=103310935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310936	.	G	.	.	LowGQX	END=103310937	GT	./.
chr2	103310938	.	T	.	.	LowGQX	END=103310939;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310940	.	T	.	.	LowGQX	END=103310941	GT	./.
chr2	103310942	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310943	.	G	.	.	LowGQX	.	GT	./.
chr2	103310944	.	T	.	.	LowGQX	END=103310952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310953	.	C	.	.	LowGQX	.	GT	./.
chr2	103310954	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310955	.	A	.	.	LowGQX	.	GT	./.
chr2	103310956	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310957	.	T	.	.	LowGQX	END=103310958	GT	./.
chr2	103310959	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310960	.	C	.	.	LowGQX	.	GT	./.
chr2	103310961	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310962	.	G	.	.	LowGQX	END=103310965	GT	./.
chr2	103310966	.	G	.	.	LowGQX	END=103310979;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103310980	.	G	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	103310981	.	T	.	.	LowGQX	END=103310996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	103310997	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	103310998	.	A	.	.	LowGQX	END=103311005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	103311006	.	A	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	103311007	.	T	.	.	LowGQX	END=103311020;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	103311488	.	T	.	.	LowGQX	END=103311587	GT	./.
chr2	103317527	.	A	.	.	LowGQX	END=103317716	GT	./.
chr2	103318813	.	T	.	.	LowGQX	END=103318922	GT	./.
chr2	103318923	.	G	.	.	LowGQX	END=103318947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	103318948	.	A	.	.	LowGQX	.	GT	./.
chr2	103318949	.	A	.	.	LowGQX	END=103318963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	103321001	.	A	.	.	LowGQX	END=103321136	GT	./.
chr2	103322301	.	A	.	.	LowGQX	END=103322400	GT	./.
chr2	103324576	.	A	.	.	LowGQX	END=103324950	GT	./.
chr2	103334867	.	G	.	.	LowGQX	END=103335668	GT	./.
chr2	103340157	.	A	.	.	LowGQX	END=103340267;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103340268	.	G	.	.	LowGQX	END=103340370	GT	./.
chr2	103343302	.	A	.	.	LowGQX	END=103343435	GT	./.
chr2	103347456	.	A	.	.	LowGQX	END=103347555	GT	./.
chr2	103348519	.	C	.	.	LowGQX	END=103348618	GT	./.
chr2	103348775	.	A	.	.	LowGQX	.	GT	./.
chr2	103348776	.	C	.	.	LowGQX	END=103348874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103353052	.	C	.	.	LowGQX	END=103353054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	103353055	.	A	.	.	LowGQX	.	GT	./.
chr2	103353056	.	G	.	.	LowGQX	END=103353128;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103353129	.	G	.	.	LowGQX	.	GT	./.
chr2	103353130	.	A	.	.	LowGQX	END=103353195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103353196	.	T	.	.	LowGQX	END=103353263	GT	./.
chr2	103353264	.	C	.	.	LowGQX	END=103353271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103374881	.	A	.	.	LowGQX	END=103374980	GT	./.
chr2	103378635	.	A	.	.	LowGQX	END=103378719	GT	./.
chr2	103378720	.	C	.	.	LowGQX	END=103378810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103379044	.	A	.	.	LowGQX	END=103379147	GT	./.
chr2	103380786	.	A	.	.	LowGQX	END=103380810;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	103380811	.	T	.	.	LowGQX	END=103380888	GT	./.
chr2	103414320	.	A	.	.	LowGQX	END=103414461	GT	./.
chr2	103431205	.	A	.	.	LowGQX	END=103431429	GT	./.
chr2	104995539	.	T	.	.	LowGQX	END=104996102	GT	./.
chr2	105471956	.	G	.	.	LowGQX	END=105472708	GT	./.
chr2	105472709	.	G	.	.	LowGQX	END=105472727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	105472728	.	T	.	.	LowGQX	.	GT	./.
chr2	105472729	.	T	.	.	LowGQX	END=105472734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	105472735	.	A	.	.	LowGQX	.	GT	./.
chr2	105472736	.	C	.	.	LowGQX	END=105472755;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	105472756	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	105472757	.	C	.	.	LowGQX	END=105472766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	105472767	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	105472768	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	105472769	.	G	.	.	LowGQX	END=105472771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	105472772	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	105472773	.	G	.	.	LowGQX	END=105472775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	105472776	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	105472777	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	105472778	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	105472779	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:6:60
chr2	105472780	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	105472781	.	C	.	.	LowGQX	END=105472785;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	105472786	.	A	.	.	LowGQX	.	GT	./.
chr2	105472787	.	C	.	.	LowGQX	END=105472790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	105472791	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	105472792	.	A	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	105472793	.	C	.	.	LowGQX	END=105472794;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	105472795	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:3:3:60
chr2	105472796	.	C	.	.	LowGQX	END=105472798;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	105472799	.	C	.	.	LowGQX	END=105472803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	105472804	.	A	.	.	LowGQX	END=105472805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	105472806	.	C	.	.	LowGQX	END=105472809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	105472810	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:3:60
chr2	105472811	.	C	.	.	LowGQX	END=105472816;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	105472817	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:4:6:60
chr2	105472818	.	C	.	.	LowGQX	END=105472819;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	105472820	.	C	.	.	LowGQX	END=105472822;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:15:60
chr2	105472823	.	G	.	42.03	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:12.04:60:12
chr2	105472824	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr2	105472825	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:6:60
chr2	105472826	.	C	.	.	LowGQX	END=105472827;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	105472828	.	A	.	8.18	LowGQX	DP=5;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:4:5:0.02:60:0
chr2	105472829	.	C	.	.	LowGQX	END=105472836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:5:12:60
chr2	105472837	.	G	.	.	LowGQX	END=105472838;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	105472839	.	C	.	.	LowGQX	END=105472845;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	105472846	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr2	105472847	.	C	.	.	LowGQX	END=105472848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	105472849	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:15:60
chr2	105472850	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr2	105472851	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr2	105472852	.	G	.	.	LowGQX	END=105472853;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr2	105472854	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:1:60
chr2	105472855	.	G	.	.	LowGQX	END=105472858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	105472859	.	C	.	.	LowGQX	END=105472880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	105472881	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr2	105472882	.	T	.	.	LowGQX	END=105472883;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:18:60
chr2	105472884	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:1:60
chr2	105472885	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:15:60
chr2	105472886	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr2	105472887	.	A	.	45.04	LowGQX	DP=10;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:8:10:15.05:60:15
chr2	105472888	.	G	.	.	LowGQX	END=105472890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:21:60
chr2	105472891	.	A	.	.	LowGQX	END=105472893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr2	105472894	.	A	.	42.03	LowGQX	DP=9;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:7:9:12.04:60:12
chr2	105472895	.	C	.	.	LowGQX	END=105472899;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr2	105472900	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr2	105472901	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:21:60
chr2	105472902	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:15:60
chr2	105472903	.	C	.	.	LowGQX	END=105472904;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:18:60
chr2	105472905	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:24:60
chr2	105472906	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:10:18:60
chr2	105472907	.	C	.	.	LowGQX	END=105472913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:10:21:60
chr2	105472914	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:18:60
chr2	105472915	.	C	.	.	LowGQX	END=105472929;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:21:60
chr2	105472930	.	A	.	.	PASS	END=105472933;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:39:60
chr2	105472934	.	G	.	.	PASS	END=105472944;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:42:60
chr2	105472945	.	C	.	.	PASS	END=105472954;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr2	105472955	.	C	.	.	PASS	END=105472982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:66:60
chr2	105472983	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:60:60
chr2	105472984	.	C	.	.	PASS	END=105473015;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:66:60
chr2	105473016	.	C	.	.	PASS	END=105473082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:78:60
chr2	105473083	.	A	.	.	PASS	END=105473106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:69:60
chr2	105473107	.	T	.	.	PASS	END=105473125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:60
chr2	105473126	.	G	.	.	PASS	END=105473151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:51:60
chr2	105473152	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:28:18:60
chr2	105473153	.	A	.	.	PASS	END=105473166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:51:60
chr2	105473167	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:20:42:60
chr2	105473168	.	C	.	.	PASS	END=105473181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:48:60
chr2	105473182	.	G	.	.	PASS	END=105473201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:60
chr2	105473202	.	T	.	.	PASS	END=105473211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:36:60
chr2	105473212	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:14:30:60
chr2	105473213	.	G	.	.	PASS	END=105473217;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	105473218	.	T	.	.	PASS	END=105473224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:60
chr2	105473225	.	C	.	.	LowGQX	END=105473247;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	105473248	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:18:60
chr2	105473249	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:8:24:60
chr2	105473250	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr2	105473251	.	G	.	.	LowGQX	END=105473254;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	105473255	.	C	.	.	LowGQX	END=105473256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:21:60
chr2	105473257	.	A	.	.	LowGQX	END=105473263;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:18:60
chr2	105473264	.	C	.	.	LowGQX	END=105473266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:8:24:60
chr2	105473267	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:7:15:60
chr2	105473268	.	C	.	.	LowGQX	END=105473271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	105473272	.	A	.	.	LowGQX	END=105473273;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:15:60
chr2	105473274	.	A	.	.	LowGQX	END=105473279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	105473280	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:15:60
chr2	105473281	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:9:60
chr2	105473282	.	C	.	.	LowGQX	END=105473285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	105473286	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr2	105473287	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr2	105473288	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr2	105473289	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:18:60
chr2	105473290	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:6:12:60
chr2	105473291	.	C	.	.	LowGQX	END=105473293;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:6:15:60
chr2	105473294	.	C	.	.	LowGQX	END=105473296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	105473297	.	G	C	3.16	LowGQX;LowQD;SB	BaseQRankSum=0.727;DP=4;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=0.0000;MQ=60;MQ0=0;MQRankSum=0.727;QD=0.79;ReadPosRankSum=0.727;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:3,1:4:30.29:30,0,66:60:3:0.250
chr2	105473298	.	C	.	.	LowGQX	END=105473306;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	105473307	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:5:15:60
chr2	105473308	.	A	.	.	LowGQX	END=105473310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:6:60
chr2	105473311	.	A	.	.	LowGQX	END=105473313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:4:9:60
chr2	105473314	.	T	.	.	LowGQX	.	GT	./.
chr2	105473315	.	G	.	.	LowGQX	END=105473316;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	105473317	.	T	.	33	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	105473318	.	G	.	.	LowGQX	END=105473319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:9:60
chr2	105473320	.	G	.	.	LowGQX	END=105473335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	105473336	.	T	.	.	LowGQX	.	GT	./.
chr2	105473337	.	C	.	.	LowGQX	END=105473380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	105473381	.	G	.	.	LowGQX	.	GT	./.
chr2	105473382	.	C	.	.	LowGQX	END=105473457;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	105473458	.	C	.	.	LowGQX	END=105473473	GT	./.
chr2	105484656	.	C	.	.	LowGQX	END=105484850	GT	./.
chr2	105488695	.	T	.	.	LowGQX	END=105488794	GT	./.
chr2	105654549	.	A	.	.	LowGQX	END=105654566;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	105654567	.	T	.	.	LowGQX	END=105654687	GT	./.
chr2	105665627	.	A	.	.	LowGQX	END=105665826	GT	./.
chr2	105687753	.	C	.	.	LowGQX	END=105687852	GT	./.
chr2	105687883	.	T	.	.	LowGQX	END=105687982	GT	./.
chr2	105696431	.	T	.	.	LowGQX	END=105696530	GT	./.
chr2	105705435	.	G	.	.	LowGQX	END=105705534	GT	./.
chr2	105706366	.	A	.	.	LowGQX	END=105706465	GT	./.
chr2	105707751	.	T	.	.	LowGQX	END=105707818	GT	./.
chr2	105707819	.	G	.	.	LowGQX	END=105707824;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	105707825	.	C	A	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	105707826	.	T	.	.	LowGQX	END=105707850;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	105708857	.	A	.	.	LowGQX	END=105709029	GT	./.
chr2	105709986	.	A	.	.	LowGQX	END=105710098	GT	./.
chr2	105713611	.	A	.	.	LowGQX	END=105713784	GT	./.
chr2	105716124	.	G	.	.	LowGQX	END=105716223	GT	./.
chr2	105858314	.	C	.	.	LowGQX	END=105858723	GT	./.
chr2	105858724	.	G	.	.	LowGQX	END=105858906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	105858907	.	A	.	.	LowGQX	.	GT	./.
chr2	105858908	.	C	.	.	LowGQX	END=105858963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	105858964	.	T	.	.	LowGQX	.	GT	./.
chr2	105858965	.	G	.	.	LowGQX	END=105859051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	105859052	.	T	.	.	LowGQX	END=105859436	GT	./.
chr2	105883838	.	T	.	.	PASS	END=105883885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	105883886	.	C	.	.	PASS	END=105883960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	105883961	.	C	.	.	PASS	END=105884011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr2	105884012	.	T	.	.	PASS	END=105884018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	105885727	.	A	.	.	PASS	END=105885789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:252:99:60
chr2	105885790	.	C	.	.	PASS	END=105885829;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:328:99:60
chr2	105885830	.	A	.	.	PASS	END=105885955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:344:99:60
chr2	105885956	.	C	.	.	PASS	END=105885960;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:335:99:60
chr2	105885961	.	T	C	4483.90	PASS	BaseQRankSum=2.177;DP=333;Dels=0.00;FS=0.421;HRun=0;HaplotypeScore=25.0409;MQ=60;MQ0=0;MQRankSum=0.292;QD=13.47;ReadPosRankSum=-0.052;SB=-2011.86	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:166,166:333:99:4484,0,4212:60:99:0.500
chr2	105885962	.	G	.	.	PASS	END=105886067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:255:99:60
chr2	105886068	.	C	.	.	PASS	END=105886129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr2	105886130	.	T	.	.	PASS	END=105886141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:60
chr2	105886142	.	G	.	.	PASS	END=105886159;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	105886160	.	T	.	.	PASS	END=105886164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:60
chr2	105889280	.	C	.	.	PASS	END=105889297;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	105889298	.	G	.	.	PASS	END=105889319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:60
chr2	105889320	.	A	.	.	PASS	END=105889447;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr2	105889448	.	T	.	.	PASS	END=105889465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	105889466	.	T	.	.	PASS	END=105889473;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:60
chr2	105889999	.	A	.	.	PASS	END=105890024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	105890025	.	A	.	.	PASS	END=105890120;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	105890121	.	T	.	.	PASS	END=105890149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	105892013	.	A	.	.	PASS	END=105892066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:96:60
chr2	105892067	.	C	.	.	PASS	END=105892117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	105892118	.	G	.	.	PASS	END=105892131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:81:60
chr2	105892132	.	A	.	.	PASS	END=105892133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:75:60
chr2	105892134	.	A	.	.	PASS	END=105892157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:60
chr2	105892158	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:15:60
chr2	105892159	.	A	.	.	PASS	END=105892162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:60
chr2	105894050	.	T	.	.	PASS	END=105894067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:93:60
chr2	105894068	.	C	.	.	PASS	END=105894149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	105896837	.	A	.	.	PASS	END=105896860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:248:99:60
chr2	105896861	.	C	.	.	PASS	END=105896987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:274:99:60
chr2	105896988	.	T	.	.	PASS	END=105897002;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr2	105897003	.	G	A	2927.73	PASS	BaseQRankSum=2.369;DP=229;Dels=0.00;FS=5.836;HRun=0;HaplotypeScore=11.6767;MQ=60;MQ0=0;MQRankSum=0.603;QD=12.78;ReadPosRankSum=0.019;SB=-1089.19	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:115,114:229:99:2958,0,2949:60:99:0.498
chr2	105897004	.	T	.	.	PASS	END=105897033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:60
chr2	105897034	.	T	.	.	PASS	END=105897092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr2	105897093	.	A	.	.	PASS	END=105897182;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	105900765	.	C	.	.	PASS	END=105900864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:99:60
chr2	105912781	.	A	.	.	PASS	END=105912817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	105912818	.	A	.	.	PASS	END=105912911;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:127:99:60
chr2	105912912	.	C	.	.	PASS	END=105912955;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	105912956	.	C	.	.	PASS	END=105912969;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	105914966	.	A	.	.	PASS	END=105914985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	105914986	.	T	.	.	PASS	END=105915102;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	105915103	.	C	.	.	PASS	END=105915124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	105915125	.	G	.	.	PASS	END=105915127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	105915128	.	G	A	708.70	PASS	BaseQRankSum=1.511;DP=67;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;MQRankSum=-1.624;QD=10.58;ReadPosRankSum=0.972;SB=-326.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:34,33:67:99:739,0,800:60:99:0.493
chr2	105915129	.	C	.	.	PASS	END=105915144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	105915145	.	C	.	.	PASS	END=105915157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:60
chr2	105915158	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:57:60
chr2	105915159	.	A	.	.	PASS	END=105915161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:87:60
chr2	105915162	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:65:60
chr2	105915163	.	C	.	.	PASS	END=105915164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:96:60
chr2	105924069	.	A	.	.	PASS	END=105924113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	105924114	.	C	.	.	PASS	END=105924157;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	105924158	.	G	.	.	PASS	END=105924194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:60
chr2	105924195	.	G	.	.	PASS	END=105924377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr2	105924378	.	G	.	.	PASS	END=105924509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr2	105924510	.	A	G	3549.44	PASS	BaseQRankSum=1.336;DP=253;Dels=0.00;FS=6.113;HRun=0;HaplotypeScore=19.0864;MQ=60;MQ0=0;MQRankSum=0.745;QD=14.03;ReadPosRankSum=-1.076;SB=-1960.11	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:116,136:253:99:3549,0,3076:60:99:0.540
chr2	105924511	.	C	.	.	PASS	END=105924637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:209:99:60
chr2	105924638	.	T	.	.	PASS	END=105924683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:159:99:60
chr2	105924684	.	G	.	.	PASS	END=105924727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	105924728	.	A	.	.	PASS	END=105924750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	105924751	.	C	.	.	PASS	END=105924760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	105953930	.	C	.	.	LowGQX	END=105954145	GT	./.
chr2	105956018	.	A	.	.	LowGQX	END=105956208	GT	./.
chr2	105959303	.	A	.	.	LowGQX	END=105959682	GT	./.
chr2	105961751	.	A	.	.	LowGQX	END=105961850	GT	./.
chr2	105977738	.	A	.	.	PASS	END=105977761;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	105977762	.	G	.	.	PASS	END=105977784;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	105977785	.	T	.	.	PASS	END=105977808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	105977809	.	T	.	.	PASS	END=105977893;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:60
chr2	105979740	.	A	.	.	PASS	END=105979756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:60
chr2	105979757	.	T	.	.	PASS	END=105979888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:187:99:60
chr2	105979889	.	A	.	.	PASS	END=105979906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	105979907	.	T	.	.	PASS	END=105979927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	105979928	.	G	.	.	PASS	END=105979930;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	105984025	.	A	.	.	PASS	END=105984037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	105984038	.	G	.	.	PASS	END=105984056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:60
chr2	105984057	.	T	.	.	PASS	END=105984090;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:307:99:60
chr2	105984091	.	T	.	.	PASS	END=105984180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:343:99:60
chr2	105984181	.	T	.	.	PASS	END=105984196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:263:99:60
chr2	105984197	.	C	.	.	PASS	END=105984198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr2	105989987	.	T	.	.	PASS	END=105990026;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	105990027	.	G	.	.	PASS	END=105990077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:60
chr2	105990078	.	G	.	.	PASS	END=105990165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr2	105990166	.	A	.	.	PASS	END=105990192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:196:99:60
chr2	105994522	.	C	.	.	LowGQX	END=105994621	GT	./.
chr2	106002816	.	A	.	.	PASS	END=106002817;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:81:60
chr2	106002818	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:57:60
chr2	106002819	.	T	.	.	PASS	END=106002841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr2	106002842	.	C	.	.	PASS	END=106002890;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:92:60
chr2	106002891	.	C	.	.	PASS	END=106002986;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:60
chr2	106002987	.	T	.	.	PASS	END=106002997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:60
chr2	106006523	.	A	.	.	LowGQX	END=106006550;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:3:60
chr2	106006551	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	106006552	.	G	.	.	LowGQX	END=106006553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:3:6:60
chr2	106006554	.	T	.	33.01	LowGQX	DP=3;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:2:3:3.01:60:3
chr2	106006555	.	G	.	.	LowGQX	END=106006562;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106006563	.	C	.	.	LowGQX	.	GT	./.
chr2	106006564	.	C	.	.	LowGQX	END=106006586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106006587	.	G	.	.	LowGQX	END=106006684	GT	./.
chr2	106013079	.	A	.	.	LowGQX	END=106013178	GT	./.
chr2	106015298	.	C	.	.	LowGQX	END=106015558	GT	./.
chr2	106015679	.	C	.	.	LowGQX	END=106015807;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106015808	.	G	.	.	LowGQX	END=106015923	GT	./.
chr2	106015924	.	G	.	.	LowGQX	END=106016007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106471518	.	A	.	.	LowGQX	END=106471546	GT	./.
chr2	106471547	.	A	.	.	LowGQX	END=106471662;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	106471663	.	G	.	.	LowGQX	END=106471747	GT	./.
chr2	106497782	.	A	.	.	LowGQX	END=106497932	GT	./.
chr2	106497933	.	C	.	.	LowGQX	END=106497935;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106497936	.	G	.	.	LowGQX	END=106497937	GT	./.
chr2	106497938	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106497939	.	G	.	.	LowGQX	END=106497942	GT	./.
chr2	106497943	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106497944	.	G	.	.	LowGQX	.	GT	./.
chr2	106497945	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106497946	.	T	.	.	LowGQX	.	GT	./.
chr2	106497947	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106497948	.	T	.	.	LowGQX	.	GT	./.
chr2	106497949	.	C	.	.	LowGQX	END=106497951;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106497952	.	T	.	.	LowGQX	END=106497956	GT	./.
chr2	106497957	.	A	.	.	LowGQX	END=106497962;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106497963	.	T	.	.	LowGQX	.	GT	./.
chr2	106497964	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106497965	.	G	.	.	LowGQX	END=106497966	GT	./.
chr2	106497967	.	G	.	.	LowGQX	END=106497968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106497969	.	G	.	.	LowGQX	.	GT	./.
chr2	106497970	.	T	.	.	LowGQX	END=106497975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106497976	.	T	.	.	LowGQX	.	GT	./.
chr2	106497977	.	C	.	.	LowGQX	END=106497978;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106497979	.	T	.	.	LowGQX	.	GT	./.
chr2	106497980	.	G	.	.	LowGQX	END=106497985;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106497986	.	G	.	.	LowGQX	END=106497987	GT	./.
chr2	106497988	.	G	.	.	LowGQX	END=106497996;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106497997	.	G	.	.	LowGQX	END=106497999	GT	./.
chr2	106498000	.	G	.	.	LowGQX	END=106498001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106498002	.	T	.	.	LowGQX	.	GT	./.
chr2	106498003	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:2:3:60
chr2	106498004	.	G	.	.	LowGQX	.	GT	./.
chr2	106498005	.	C	.	.	LowGQX	END=106498006;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:6:60
chr2	106498007	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	106498008	.	G	.	.	LowGQX	END=106498032;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	106498033	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	106498034	.	G	.	32.98	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3:60:3
chr2	106498035	.	T	.	.	LowGQX	.	GT	./.
chr2	106498036	.	T	.	.	LowGQX	END=106498039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	106498040	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	106498041	.	T	.	.	LowGQX	END=106498082;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	106498083	.	T	.	.	LowGQX	.	GT	./.
chr2	106498084	.	C	.	.	LowGQX	END=106498106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106498107	.	A	.	.	LowGQX	.	GT	./.
chr2	106498108	.	A	.	.	LowGQX	END=106498152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106498153	.	T	.	.	LowGQX	.	GT	./.
chr2	106498154	.	G	.	.	LowGQX	END=106498194;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106498195	.	A	.	.	LowGQX	END=106498507	GT	./.
chr2	106509436	.	A	.	.	LowGQX	END=106509634	GT	./.
chr2	106682158	.	C	.	.	LowGQX	END=106682368	GT	./.
chr2	106687370	.	C	.	.	LowGQX	END=106687389;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106687390	.	G	.	.	LowGQX	END=106687405	GT	./.
chr2	106687406	.	T	.	.	LowGQX	END=106687407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106687408	.	G	.	.	LowGQX	.	GT	./.
chr2	106687409	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106687410	.	T	.	.	LowGQX	.	GT	./.
chr2	106687411	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106687412	.	T	.	.	LowGQX	.	GT	./.
chr2	106687413	.	G	.	.	LowGQX	END=106687422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106687423	.	T	.	.	LowGQX	.	GT	./.
chr2	106687424	.	C	.	.	LowGQX	END=106687426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106687427	.	T	.	.	LowGQX	.	GT	./.
chr2	106687428	.	G	.	.	LowGQX	END=106687438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106687439	.	T	.	.	LowGQX	.	GT	./.
chr2	106687440	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106687441	.	T	.	.	LowGQX	.	GT	./.
chr2	106687442	.	G	.	.	LowGQX	END=106687455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106687456	.	G	C	9.80	LowGQ;LowGQX;SB	DP=1;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=9.80;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,1:1:3.01:39,3,0:60:3:1.000
chr2	106687457	.	A	.	.	LowGQX	END=106687469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106688274	.	A	.	.	LowGQX	END=106688373	GT	./.
chr2	106690340	.	A	.	.	LowGQX	END=106690501	GT	./.
chr2	106694219	.	A	.	.	LowGQX	END=106694384	GT	./.
chr2	106710481	.	T	.	.	LowGQX	END=106710660	GT	./.
chr2	106713173	.	C	.	.	LowGQX	END=106713275	GT	./.
chr2	106713276	.	A	.	.	LowGQX	END=106713445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106713446	.	G	.	.	LowGQX	END=106713576	GT	./.
chr2	106713577	.	C	.	.	LowGQX	END=106713698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	106715151	.	G	.	.	LowGQX	END=106715250	GT	./.
chr2	106717456	.	T	.	.	LowGQX	END=106717574	GT	./.
chr2	106721222	.	A	.	.	LowGQX	END=106721321	GT	./.
chr2	106729099	.	T	.	.	LowGQX	END=106729101;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106729102	.	C	.	.	LowGQX	.	GT	./.
chr2	106729103	.	G	.	.	LowGQX	END=106729116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106729117	.	C	.	.	LowGQX	.	GT	./.
chr2	106729118	.	T	.	.	LowGQX	END=106729152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	106729153	.	C	.	.	LowGQX	END=106729221	GT	./.
chr2	106739425	.	C	.	.	LowGQX	END=106739547	GT	./.
chr2	106742056	.	T	.	.	LowGQX	END=106742155	GT	./.
chr2	106746072	.	T	.	.	LowGQX	END=106746234	GT	./.
chr2	106761645	.	C	.	.	LowGQX	END=106761826	GT	./.
chr2	106774494	.	A	.	.	LowGQX	END=106774593	GT	./.
chr2	106780042	.	T	.	.	LowGQX	END=106780194	GT	./.
chr2	106781174	.	A	.	.	LowGQX	END=106781273	GT	./.
chr2	106782476	.	T	.	.	LowGQX	END=106782575	GT	./.
chr2	106810541	.	C	.	.	LowGQX	END=106810700	GT	./.
chr2	107007902	.	A	.	.	LowGQX	END=107008001;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr2	107021630	.	C	.	.	LowGQX	END=107021644	GT	./.
chr2	107021645	.	G	.	.	LowGQX	END=107021712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr2	107021713	.	A	.	.	LowGQX	.	GT	./.
chr2	107021714	.	A	.	.	LowGQX	END=107021726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr2	107021727	.	A	.	.	LowGQX	.	GT	./.
chr2	107021728	.	A	.	.	LowGQX	END=107021729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:51
chr2	107029184	.	G	.	.	LowGQX	END=107029243;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	107029244	.	A	.	.	LowGQX	.	GT	./.
chr2	107029245	.	C	.	.	LowGQX	END=107029255;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	107029256	.	A	.	.	LowGQX	.	GT	./.
chr2	107029257	.	C	.	.	LowGQX	END=107029270;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	107029271	.	A	.	.	LowGQX	.	GT	./.
chr2	107029272	.	C	.	.	LowGQX	END=107029275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	107029276	.	G	.	.	LowGQX	.	GT	./.
chr2	107029277	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr2	107029278	.	T	.	.	LowGQX	.	GT	./.
chr2	107029279	.	A	.	.	LowGQX	END=107029283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	107029468	.	A	.	.	LowGQX	END=107029473	GT	./.
chr2	107029474	.	T	.	.	LowGQX	END=107029496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	107029497	.	T	.	.	LowGQX	.	GT	./.
chr2	107029498	.	T	.	.	LowGQX	END=107029507;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	107029508	.	G	.	.	LowGQX	.	GT	./.
chr2	107029509	.	T	.	.	LowGQX	END=107029624;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	107029625	.	A	.	.	LowGQX	END=107029807	GT	./.
chr2	107032305	.	C	.	.	LowGQX	END=107032435	GT	./.
chr2	107032436	.	A	.	.	LowGQX	END=107032445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	107039498	.	C	.	.	PASS	END=107039534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:20
chr2	107039535	.	A	.	.	PASS	END=107039546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:20
chr2	107039547	.	G	.	.	LowMQ	END=107039575;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:99:19
chr2	107039576	.	C	.	.	PASS	END=107039579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:198:99:20
chr2	107039580	.	C	.	.	LowMQ	END=107039583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:222:99:19
chr2	107039584	.	A	.	.	PASS	END=107039585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:20
chr2	107039586	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:222:99:19
chr2	107039587	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:222:99:20
chr2	107039588	.	T	.	.	LowMQ	END=107039600;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:19
chr2	107039601	.	A	.	.	PASS	END=107039603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:224:99:20
chr2	107039604	.	T	.	.	LowMQ	END=107039610;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:239:99:19
chr2	107039611	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:240:99:20
chr2	107039612	.	A	.	.	LowMQ	END=107039627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:235:99:19
chr2	107039628	.	G	.	.	PASS	END=107039637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:20
chr2	107039638	.	G	.	.	LowMQ	END=107039639;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:19
chr2	107039640	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:237:99:20
chr2	107039641	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:240:99:19
chr2	107039642	.	T	.	.	PASS	END=107039655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:220:99:20
chr2	107039656	.	G	.	.	PASS	END=107039717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:285:99:24
chr2	107039718	.	A	.	.	PASS	END=107039789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:346:99:27
chr2	107039790	.	A	.	.	PASS	END=107039874;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:363:99:22
chr2	107039875	.	T	.	.	PASS	END=107039907;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:298:99:20
chr2	107039908	.	T	.	.	LowMQ	END=107040075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:246:99:15
chr2	107040076	.	T	.	.	LowMQ	END=107040105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:16
chr2	107040106	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:267:99:20
chr2	107040107	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:262:99:19
chr2	107040108	.	T	.	.	PASS	END=107040133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:99:20
chr2	107040134	.	G	.	.	PASS	END=107040153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:30
chr2	107040154	.	T	.	.	PASS	END=107040231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:234:99:40
chr2	107040232	.	C	.	.	PASS	END=107040319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:282:99:50
chr2	107040320	.	T	.	.	PASS	END=107040386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:365:99:40
chr2	107040387	.	C	.	.	PASS	END=107040571;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:381:99:35
chr2	107040572	.	T	C	2122.68	PASS	BaseQRankSum=1.606;DP=407;Dels=0.00;FS=29.340;HRun=0;HaplotypeScore=33.9018;MQ=45;MQ0=17;MQRankSum=-15.070;QD=5.22;ReadPosRankSum=-1.671;SB=-176.37	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:277,129:407:99:2153,0,6945:45:99:0.318
chr2	107040573	.	G	.	.	PASS	END=107040665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:339:99:43
chr2	107040666	.	C	.	.	PASS	END=107040781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:293:99:41
chr2	107040782	.	G	.	.	PASS	END=107040872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:231:99:37
chr2	107040873	.	C	.	.	PASS	END=107040984;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:193:99:37
chr2	107040985	.	T	C	662.96	PASS	BaseQRankSum=0.442;DP=208;Dels=0.00;FS=20.745;HRun=1;HaplotypeScore=16.1401;MQ=42;MQ0=12;MQRankSum=-9.574;QD=3.19;ReadPosRankSum=1.209;SB=-53.27	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:152,54:208:99:693,0,4269:42:99:0.262
chr2	107040986	.	C	.	.	PASS	END=107041054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:186:99:42
chr2	107041055	.	A	.	.	PASS	END=107041117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:52
chr2	107041118	.	C	.	.	PASS	END=107041234;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:192:99:46
chr2	107041235	.	T	.	.	PASS	END=107041383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:35
chr2	107041384	.	A	.	.	PASS	END=107041434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:35
chr2	107041435	.	A	.	.	PASS	END=107041481;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:99:35
chr2	107041482	.	C	.	.	PASS	END=107041573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:37
chr2	107041574	.	T	.	.	PASS	END=107041622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:99:51
chr2	107041623	.	C	.	.	PASS	END=107041698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:47
chr2	107041699	.	C	.	.	PASS	END=107041718;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:43
chr2	107041719	.	A	.	.	PASS	END=107041722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:42
chr2	107042388	.	A	.	.	LowMQ	END=107042392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:51:13
chr2	107042393	.	A	.	.	LowMQ	END=107042395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:69:14
chr2	107042396	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:167:43:14
chr2	107042397	.	T	.	.	LowMQ	END=107042405;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:66:13
chr2	107042406	.	T	.	.	LowMQ	END=107042421;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:57:13
chr2	107042422	.	A	.	.	LowMQ	END=107042423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:51:13
chr2	107042424	.	A	.	.	LowMQ	END=107042442;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:66:14
chr2	107042443	.	T	.	.	LowMQ	END=107042451;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:81:18
chr2	107042452	.	T	.	.	PASS	END=107042520;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:171:81:20
chr2	107042521	.	A	.	.	PASS	END=107042531;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:81:26
chr2	107042532	.	C	.	.	PASS	END=107042534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:30
chr2	107042535	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:123:75:30
chr2	107042536	.	T	.	.	PASS	END=107042544;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:81:30
chr2	107042545	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:102:4:32
chr2	107042546	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:106:99:31
chr2	107046101	.	C	.	.	LowGQX;LowMQ	END=107046107;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:15:12
chr2	107046108	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:34:0:12
chr2	107046109	.	T	.	.	LowGQX;LowMQ	END=107046115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:15:11
chr2	107046116	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:36:9:11
chr2	107046117	.	C	.	.	LowGQX;LowMQ	END=107046119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:18:11
chr2	107046120	.	G	.	.	LowGQX;LowMQ	END=107046121;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:12:11
chr2	107046122	.	A	.	.	LowGQX;LowMQ	END=107046124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:9:8
chr2	107046125	.	G	.	.	LowGQX;LowMQ	END=107046133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:6:7
chr2	107046134	.	C	.	.	LowGQX;LowMQ	END=107046135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:3:7
chr2	107046136	.	C	.	.	LowGQX;LowMQ	END=107046146;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:12:8
chr2	107046147	.	C	.	.	LowGQX;LowMQ	END=107046153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:15:10
chr2	107046154	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:44:12:10
chr2	107046155	.	G	.	.	LowGQX;LowMQ	END=107046161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:15:10
chr2	107046162	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:41:12:10
chr2	107046163	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:41:18:10
chr2	107046164	.	C	.	.	LowGQX;LowMQ	END=107046168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:24:12
chr2	107046169	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:48:30:13
chr2	107046170	.	T	.	.	LowGQX;LowMQ	END=107046172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:27:13
chr2	107046173	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:47:30:13
chr2	107046174	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:48:27:13
chr2	107046175	.	T	.	.	LowMQ	END=107046176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:30:13
chr2	107046177	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:48:27:13
chr2	107046178	.	G	.	.	LowMQ	END=107046180;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:30:13
chr2	107046181	.	C	.	.	LowGQX;LowMQ	END=107046183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:24:13
chr2	107046184	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:47:30:13
chr2	107046185	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:47:27:13
chr2	107046186	.	G	.	.	LowMQ	END=107046187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:30:13
chr2	107046188	.	T	.	.	LowGQX;LowMQ	END=107046193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:27:13
chr2	107046194	.	G	.	.	LowMQ	END=107046195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:30:13
chr2	107046196	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:46:27:15
chr2	107046197	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:46:30:15
chr2	107046198	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:46:27:15
chr2	107046199	.	T	.	.	LowMQ	END=107046200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:30:15
chr2	107046201	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:46:27:15
chr2	107046202	.	C	.	.	LowMQ	END=107046209;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:30:15
chr2	107046210	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:46:27:15
chr2	107046211	.	A	.	.	LowMQ	END=107046219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:30:15
chr2	107046220	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:46:27:15
chr2	107046221	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:46:33:15
chr2	107046222	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:46:27:15
chr2	107046223	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:46:33:15
chr2	107046224	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:46:27:15
chr2	107046225	.	C	.	.	LowMQ	END=107046228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:30:15
chr2	107046229	.	C	.	.	LowGQX;LowMQ	END=107046231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:24:15
chr2	107046232	.	T	.	.	LowMQ	END=107046233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:30:15
chr2	107046234	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:43:27:15
chr2	107046235	.	T	.	.	LowMQ	END=107046237;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:30:15
chr2	107046238	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:44:27:15
chr2	107046239	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:44:30:15
chr2	107046240	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:44:27:15
chr2	107046241	.	T	.	.	LowMQ	END=107046242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:30:14
chr2	107046243	.	G	.	.	LowGQX;LowMQ	END=107046245;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:27:15
chr2	107046246	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:44:30:15
chr2	107046247	.	G	.	.	LowGQX;LowMQ	END=107046268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:21:14
chr2	107046269	.	A	.	.	LowMQ	END=107046276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:30:15
chr2	107046277	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:38:27:15
chr2	107046278	.	A	.	.	LowMQ	END=107046279;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:30:15
chr2	107049383	.	T	.	.	PASS	END=107049387;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:63:25
chr2	107049388	.	T	.	.	PASS	END=107049391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:78:28
chr2	107049392	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:43:21:29
chr2	107049393	.	T	.	.	PASS	END=107049454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:78:29
chr2	107049455	.	G	.	.	PASS	END=107049459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:66:33
chr2	107049460	.	T	.	.	PASS	END=107049465;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:81:34
chr2	107049466	.	G	.	.	PASS	END=107049471;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:72:35
chr2	107049472	.	A	.	.	PASS	END=107049482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:78:36
chr2	107049550	.	T	.	.	PASS	END=107049553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:81:32
chr2	107049554	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:48:33
chr2	107049555	.	T	.	.	PASS	END=107049558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:69:32
chr2	107049559	.	T	.	.	PASS	END=107049581;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:84:34
chr2	107049582	.	A	.	.	PASS	END=107049674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:37
chr2	107049675	.	T	.	.	PASS	END=107049696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:93:41
chr2	107049697	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:63:42
chr2	107049698	.	A	.	.	PASS	END=107049709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:84:41
chr2	107049710	.	A	.	.	PASS	END=107049722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:60:40
chr2	107049723	.	A	.	.	PASS	END=107049730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:48:39
chr2	107049731	.	G	.	.	PASS	END=107049732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:45:40
chr2	107049733	.	C	.	.	PASS	END=107049734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:30:37
chr2	107049735	.	C	.	.	LowGQX	END=107049737;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:24:36
chr2	107049738	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:15:30:36
chr2	107049739	.	C	.	.	LowGQX	END=107049741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:24:35
chr2	107050683	.	C	.	.	PASS	END=107050694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:57:26
chr2	107050695	.	C	.	.	PASS	END=107050697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:51:26
chr2	107050698	.	A	.	.	PASS	END=107050727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:60:23
chr2	107050728	.	T	.	.	PASS	END=107050729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:75:23
chr2	107050730	.	A	.	.	PASS	END=107050735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:69:23
chr2	107050736	.	T	.	.	PASS	END=107050796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:81:25
chr2	107050797	.	C	.	.	PASS	END=107050830;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:33
chr2	107051061	.	A	.	.	LowGQX;LowMQ	END=107051078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:15:6
chr2	107051079	.	C	.	.	LowGQX;LowMQ	END=107051096;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:18:5
chr2	107051097	.	G	.	.	LowGQX;LowMQ	END=107051108;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:214:15:5
chr2	107051109	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:224:12:5
chr2	107051110	.	A	.	.	LowGQX;LowMQ	END=107051124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:15:5
chr2	107051125	.	T	.	.	LowGQX;LowMQ	END=107051126;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:12:5
chr2	107051127	.	A	.	.	LowGQX;LowMQ	END=107051133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:15:5
chr2	107051134	.	C	.	.	LowGQX;LowMQ	END=107051141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:208:12:5
chr2	107051142	.	G	.	.	LowGQX;LowMQ	END=107051143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:18:5
chr2	107051144	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:211:12:5
chr2	107051145	.	A	.	.	LowGQX;LowMQ	END=107051163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:15:5
chr2	107051164	.	C	.	.	LowGQX;LowMQ	END=107051168;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:12:5
chr2	107051169	.	A	.	.	LowGQX;LowMQ	END=107051173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:15:5
chr2	107051174	.	A	.	.	LowGQX;LowMQ	END=107051176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:9:5
chr2	107051177	.	C	.	.	LowGQX;LowMQ	END=107051190;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:176:12:5
chr2	107051191	.	T	.	.	LowGQX;LowMQ	END=107051192;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:9:5
chr2	107051193	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:187:15:5
chr2	107051194	.	C	.	.	LowGQX;LowMQ	END=107051195;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:9:5
chr2	107051196	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:189:15:5
chr2	107051197	.	G	.	.	LowGQX;LowMQ	END=107051201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:9:5
chr2	107051202	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:192:15:5
chr2	107051203	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:192:9:5
chr2	107051204	.	T	.	.	LowGQX;LowMQ	END=107051205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:24:6
chr2	107051206	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:214:18:6
chr2	107051207	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:210:24:6
chr2	107051208	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:215:12:6
chr2	107051209	.	C	.	.	LowGQX;LowMQ	END=107051211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:215:21:6
chr2	107051212	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:220:18:6
chr2	107051213	.	T	.	.	LowGQX;LowMQ	END=107051220;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:21:6
chr2	107051221	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:219:30:6
chr2	107051222	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:216:21:6
chr2	107051223	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:216:30:6
chr2	107051224	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:208:24:6
chr2	107051225	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:206:30:6
chr2	107051226	.	G	.	.	LowGQX;LowMQ	END=107051229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:206:24:6
chr2	107051230	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:201:18:6
chr2	107051496	.	C	.	.	LowMQ	END=107051528;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:99:17
chr2	107051529	.	G	.	.	LowMQ	END=107051534;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:18
chr2	107051535	.	C	.	.	PASS	END=107051626;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:184:99:20
chr2	107051627	.	C	.	.	PASS	END=107051684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:26
chr2	107052578	.	C	.	.	PASS	END=107052579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:41
chr2	107052580	.	A	.	.	PASS	END=107052594;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:54:41
chr2	107052595	.	T	.	.	PASS	END=107052602;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:57:41
chr2	107052603	.	A	.	.	PASS	END=107052609;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:42
chr2	107052610	.	A	.	.	PASS	END=107052620;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:99:44
chr2	107052621	.	T	.	.	PASS	END=107052653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:44
chr2	107052654	.	G	.	.	PASS	END=107052746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:45
chr2	107052869	.	C	.	.	PASS	END=107052895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:78:31
chr2	107052896	.	A	.	.	PASS	END=107052897;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:71:30
chr2	107052898	.	C	.	.	PASS	END=107052906;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:81:30
chr2	107052907	.	A	.	.	PASS	END=107052919;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:30
chr2	107052920	.	T	.	.	PASS	END=107052927;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:30
chr2	107052928	.	T	.	.	PASS	END=107052959;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:32
chr2	107052960	.	C	.	.	PASS	END=107053018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:31
chr2	107053019	.	G	.	.	PASS	END=107053023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:28
chr2	107053024	.	A	.	.	PASS	END=107053067;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:27
chr2	107053117	.	A	.	.	PASS	END=107053140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:24
chr2	107053141	.	A	.	.	PASS	END=107053160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:23
chr2	107053161	.	C	.	.	PASS	END=107053173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:21
chr2	107053174	.	C	.	.	PASS	END=107053188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:20
chr2	107053189	.	G	.	.	LowMQ	END=107053284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:17
chr2	107053285	.	A	.	.	LowMQ	END=107053296;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:18
chr2	107053297	.	T	.	.	LowMQ	END=107053310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:87:17
chr2	107055352	.	C	.	.	LowGQX;LowMQ	END=107055386	GT	./.
chr2	107055387	.	A	.	.	LowGQX;LowMQ	END=107055400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:3:3
chr2	107055401	.	T	.	.	LowGQX;LowMQ	END=107055417;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:6:5
chr2	107055418	.	A	.	.	LowGQX;LowMQ	END=107055420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:9:5
chr2	107055421	.	T	.	.	LowGQX;LowMQ	END=107055422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:3:5
chr2	107055423	.	C	.	.	LowGQX;LowMQ	END=107055496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:6:5
chr2	107055497	.	A	.	.	LowGQX;LowMQ	END=107055521;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:9:6
chr2	107055522	.	C	.	.	LowGQX;LowMQ	END=107055542;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:12:6
chr2	107055543	.	A	.	.	LowGQX;LowMQ	END=107055549;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:6:4
chr2	107055550	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:97:0:5
chr2	107055551	.	C	.	.	LowGQX;LowMQ	END=107055618;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:3:4
chr2	107055619	.	T	.	.	LowGQX;LowMQ	END=107055651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:3:3
chr2	107055652	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107055653	.	T	.	.	LowGQX;LowMQ	END=107055659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:3:3
chr2	107055660	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107055661	.	T	.	.	LowGQX;LowMQ	END=107055663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:3:3
chr2	107055664	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107055665	.	T	.	.	LowGQX;LowMQ	END=107055668;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:3:3
chr2	107055669	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107055670	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:60:3:3
chr2	107055671	.	A	.	.	LowGQX;LowMQ	END=107055701	GT	./.
chr2	107057743	.	T	.	.	PASS	END=107057769;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:37
chr2	107057770	.	A	.	.	PASS	END=107057835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:27
chr2	107057836	.	C	.	.	PASS	END=107057842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:28
chr2	107063862	.	T	.	.	LowGQX;LowMQ	END=107063867;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:3:11
chr2	107063868	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107063869	.	C	.	.	LowGQX;LowMQ	END=107063875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:3:10
chr2	107063876	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107063877	.	A	.	.	LowGQX;LowMQ	END=107063881;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:3:10
chr2	107063882	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107063883	.	T	.	.	LowGQX;LowMQ	END=107063896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:3:9
chr2	107063897	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107063898	.	T	.	.	LowGQX;LowMQ	END=107063913;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:3:9
chr2	107063914	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107063915	.	G	.	.	LowGQX;LowMQ	END=107063945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:3:8
chr2	107063946	.	A	.	.	LowGQX;LowMQ	END=107063948	GT	./.
chr2	107063949	.	C	.	.	LowGQX;LowMQ	END=107063957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:3:7
chr2	107063958	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107063959	.	A	.	.	LowGQX;LowMQ	END=107063963;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:3:7
chr2	107063964	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107063965	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:60:6:7
chr2	107063966	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107063967	.	A	.	.	LowGQX;LowMQ	END=107063968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:3:7
chr2	107063969	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107063970	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:60:6:7
chr2	107063971	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107063972	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:63:3:7
chr2	107063973	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107063974	.	T	.	.	LowGQX;LowMQ	END=107063976;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:3:7
chr2	107063977	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107063978	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:67:3:7
chr2	107063979	.	G	.	.	LowGQX;LowMQ	END=107063980	GT	./.
chr2	107063981	.	A	.	.	LowGQX;LowMQ	END=107063983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:3:5
chr2	107063984	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107063985	.	A	.	.	LowGQX;LowMQ	END=107063989;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:3:5
chr2	107063990	.	C	.	.	LowGQX;LowMQ	END=107064069	GT	./.
chr2	107068568	.	T	.	.	LowGQX;LowMQ	END=107068578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:3:4
chr2	107068579	.	T	.	.	LowGQX;LowMQ	END=107068599;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:6:6
chr2	107068600	.	A	.	.	LowGQX;LowMQ	END=107068616;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:12:6
chr2	107068617	.	A	.	.	LowGQX;LowMQ	END=107068627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:15:7
chr2	107068628	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:73:12:7
chr2	107068629	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:73:18:7
chr2	107068630	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:74:12:8
chr2	107068631	.	A	.	.	LowGQX;LowMQ	END=107068633;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:18:8
chr2	107068634	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:78:24:8
chr2	107068635	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:78:18:8
chr2	107068636	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:78:24:8
chr2	107068637	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:78:15:8
chr2	107068638	.	C	.	.	LowGQX;LowMQ	END=107068689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:21:8
chr2	107068690	.	A	.	.	LowMQ	END=107068712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:30:9
chr2	107068713	.	G	.	.	LowMQ	END=107068728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:42:12
chr2	107068729	.	G	.	.	LowMQ	END=107068744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:54:13
chr2	107068745	.	G	.	.	LowMQ	END=107068766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:60:14
chr2	107068767	.	T	.	.	LowMQ	END=107068786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:51:14
chr2	107068787	.	T	.	.	LowMQ	END=107068789;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:45:14
chr2	107068790	.	A	.	.	LowMQ	END=107068793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:57:14
chr2	107068794	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:66:42:14
chr2	107068795	.	C	.	.	LowMQ	END=107068806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:48:14
chr2	107069080	.	G	.	.	LowGQX;LowMQ	END=107069086;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:15:14
chr2	107069087	.	T	.	.	LowGQX;LowMQ	END=107069088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:12:12
chr2	107069089	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:19:0:12
chr2	107069090	.	T	.	.	LowGQX;LowMQ	END=107069092;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:9:11
chr2	107069093	.	A	.	.	LowGQX;LowMQ	END=107069141	GT	./.
chr2	107069142	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:20:3:6
chr2	107069143	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107069144	.	T	.	.	LowGQX;LowMQ	END=107069150;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:3:6
chr2	107069151	.	C	.	.	LowGQX;LowMQ	END=107069155;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:3:7
chr2	107069156	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107069157	.	G	.	.	LowGQX;LowMQ	END=107069161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:3:6
chr2	107069162	.	T	.	.	LowGQX;LowMQ	END=107069167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:9:8
chr2	107069168	.	A	.	.	LowGQX;LowMQ	END=107069169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:6:8
chr2	107069170	.	A	.	.	LowGQX;LowMQ	END=107069189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:9:7
chr2	107069190	.	T	.	.	LowGQX;LowMQ	END=107069191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:6:8
chr2	107069192	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:50:0:8
chr2	107069193	.	A	.	.	LowGQX;LowMQ	END=107069201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:9:7
chr2	107069202	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:62:0:7
chr2	107069203	.	T	.	.	LowGQX;LowMQ	END=107069205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:9:7
chr2	107069206	.	G	.	.	LowGQX;LowMQ	END=107069208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:6:7
chr2	107069209	.	C	.	.	LowGQX;LowMQ	END=107069218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:12:7
chr2	107069219	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:70:0:7
chr2	107069220	.	C	.	.	LowGQX;LowMQ	END=107069246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:12:7
chr2	107069247	.	A	.	.	LowGQX;LowMQ	END=107069259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:12:6
chr2	107069260	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:92:0:6
chr2	107069261	.	C	.	.	LowGQX;LowMQ	END=107069294;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:12:5
chr2	107069295	.	C	.	.	LowGQX;LowMQ	END=107069312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:9:5
chr2	107069313	.	A	.	.	LowGQX;LowMQ	END=107069329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:3:3
chr2	107069330	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107069331	.	A	.	.	LowGQX;LowMQ	END=107069361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:3:3
chr2	107069362	.	T	.	.	LowGQX;LowMQ	END=107069373	GT	./.
chr2	107069374	.	A	.	.	LowGQX;LowMQ	END=107069377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:3:3
chr2	107069378	.	T	.	.	LowGQX;LowMQ	END=107069381	GT	./.
chr2	107069382	.	C	.	.	LowGQX;LowMQ	END=107069385;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:3:3
chr2	107069386	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107069387	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:70:3:3
chr2	107069388	.	T	.	.	LowGQX;LowMQ	END=107069389	GT	./.
chr2	107069390	.	G	.	.	LowGQX;LowMQ	END=107069391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:3:3
chr2	107069392	.	G	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107069393	.	G	.	.	LowGQX;LowMQ	END=107069398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:3:3
chr2	107069399	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107069400	.	A	.	.	LowGQX;LowMQ	END=107069404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:3:3
chr2	107069405	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107069406	.	A	.	.	LowGQX;LowMQ	END=107069407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:3:3
chr2	107069408	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107069409	.	A	.	.	LowGQX;LowMQ	END=107069415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:3:4
chr2	107069416	.	T	.	.	LowGQX;LowMQ	END=107069417	GT	./.
chr2	107069418	.	A	.	.	LowGQX;LowMQ	END=107069424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:3:4
chr2	107069425	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107069426	.	G	.	.	LowGQX;LowMQ	END=107069435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:3:4
chr2	107069436	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107069437	.	C	.	.	LowGQX;LowMQ	END=107069438;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:3:4
chr2	107069439	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107069440	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:45:3:4
chr2	107069441	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107069442	.	C	.	.	LowGQX;LowMQ	END=107069446;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:3:4
chr2	107069447	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	107069448	.	C	.	.	LowGQX;LowMQ	END=107069449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:3:4
chr2	107073426	.	C	.	.	PASS	END=107073452;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:72:40
chr2	107073453	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:47:42
chr2	107073454	.	T	.	.	PASS	END=107073474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:72:42
chr2	107073475	.	T	.	.	PASS	END=107073490;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:81:45
chr2	107073491	.	G	.	.	PASS	END=107073503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:41
chr2	107073504	.	T	.	.	PASS	END=107073579;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:99:36
chr2	107073971	.	G	.	.	LowMQ	END=107073975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:33:17
chr2	107073976	.	T	.	.	LowMQ	END=107073983;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:36:17
chr2	107073984	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:42:11:18
chr2	107073985	.	T	.	.	LowMQ	END=107073991;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:36:18
chr2	107073992	.	G	.	.	LowMQ	END=107073998;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:33:17
chr2	107073999	.	C	.	.	LowMQ	END=107074007;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:30:15
chr2	107074008	.	A	.	.	LowGQX;LowMQ	END=107074009;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:24:15
chr2	107074010	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:45:30:16
chr2	107074011	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:45:21:16
chr2	107074012	.	C	.	.	LowMQ	END=107074014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:30:15
chr2	107074015	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:48:27:15
chr2	107074016	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:50:33:15
chr2	107074017	.	A	.	.	LowGQX;LowMQ	END=107074019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:27:15
chr2	107074020	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:49:30:15
chr2	107074021	.	A	.	.	LowGQX;LowMQ	END=107074024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:21:15
chr2	107074025	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:50:30:15
chr2	107074026	.	G	.	.	LowGQX;LowMQ	END=107074027;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:21:14
chr2	107074028	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:52:30:14
chr2	107074029	.	A	.	.	LowGQX;LowMQ	END=107074036;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:18:13
chr2	107074037	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:53:15:13
chr2	107074038	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:55:0:13
chr2	107074039	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:55:24:13
chr2	107074040	.	C	.	.	LowGQX;LowMQ	END=107074042;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:12:11
chr2	107074043	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:52:18:11
chr2	107074044	.	C	.	.	LowGQX;LowMQ	END=107074046;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:9:11
chr2	107074047	.	T	.	.	LowGQX;LowMQ	END=107074051;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:12:12
chr2	107074052	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:41:18:12
chr2	107074053	.	T	.	.	LowGQX;LowMQ	END=107074054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:12:12
chr2	107074055	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:43:18:14
chr2	107074056	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:43:9:14
chr2	107074057	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:43:21:14
chr2	107074058	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:46:12:13
chr2	107074059	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:46:1:13
chr2	107074060	.	A	.	.	LowGQX;LowMQ	END=107074061;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:18:13
chr2	107074062	.	T	.	.	LowGQX;LowMQ	END=107074064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:15:13
chr2	107074065	.	A	.	.	LowGQX;LowMQ	END=107074066;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:24:13
chr2	107074067	.	A	.	.	LowGQX;LowMQ	END=107074069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:18:13
chr2	107074070	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:50:24:13
chr2	107074071	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:51:18:13
chr2	107074072	.	A	.	.	LowGQX;LowMQ	END=107074073;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:21:13
chr2	107074074	.	A	.	.	LowGQX;LowMQ	END=107074075;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:18:13
chr2	107074076	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:54:27:13
chr2	107074077	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:54:15:13
chr2	107074078	.	A	.	.	LowGQX;LowMQ	END=107074079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:21:13
chr2	107074080	.	A	.	.	LowGQX;LowMQ	END=107074081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:15:13
chr2	107074082	.	A	.	.	LowGQX;LowMQ	END=107074083;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:21:13
chr2	107074084	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:63:18:13
chr2	107074085	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:63:27:13
chr2	107074086	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:63:18:13
chr2	107074087	.	T	.	.	LowGQX;LowMQ	END=107074089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:24:13
chr2	107074090	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:64:18:12
chr2	107074091	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:66:24:12
chr2	107074092	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:66:18:12
chr2	107074093	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:67:24:12
chr2	107074094	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:67:18:12
chr2	107074095	.	G	.	.	LowGQX;LowMQ	END=107074100;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:21:12
chr2	107074101	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:69:18:12
chr2	107074102	.	A	.	.	LowGQX;LowMQ	END=107074104;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:24:12
chr2	107074105	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:67:30:12
chr2	107074106	.	C	.	.	LowGQX;LowMQ	END=107074110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:21:12
chr2	107074111	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:67:18:12
chr2	107074112	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:68:24:12
chr2	107074113	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:68:30:12
chr2	107074114	.	T	.	.	LowGQX;LowMQ	END=107074117;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:27:12
chr2	107074118	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:75:33:12
chr2	107074119	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:75:27:12
chr2	107074120	.	T	.	.	LowMQ	END=107074125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:33:12
chr2	107074126	.	C	.	.	LowMQ	END=107074127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:30:13
chr2	107074128	.	T	.	.	LowMQ	END=107074129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:39:12
chr2	107074130	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:86:27:12
chr2	107074131	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:85:36:12
chr2	107074132	.	T	.	.	LowGQX;LowMQ	END=107074133;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:24:10
chr2	107074134	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:81:30:10
chr2	107075650	.	C	.	.	PASS	END=107075659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:28
chr2	107075660	.	G	T	29.20	LowGQX;LowQD	BaseQRankSum=1.514;DP=58;Dels=0.00;FS=4.225;HRun=0;HaplotypeScore=1.8938;MQ=26;MQ0=11;MQRankSum=-1.005;QD=0.50;ReadPosRankSum=-1.345;SB=-28.90	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:47,11:58:59.18:59,0,997:26:29:0.190
chr2	107075661	.	A	.	.	PASS	END=107075731;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:25
chr2	107075732	.	A	.	.	PASS	END=107075768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:31
chr2	107075769	.	T	.	.	PASS	END=107075804;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:37
chr2	107084602	.	C	.	.	PASS	END=107084611;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	107084612	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:37:48:60
chr2	107084613	.	C	.	.	PASS	END=107084642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:81:60
chr2	107084643	.	A	.	.	PASS	END=107084693;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:93:60
chr2	107084694	.	G	.	.	PASS	END=107084758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:60
chr2	107423132	.	T	.	.	LowGQX	END=107423302	GT	./.
chr2	107423303	.	T	.	.	LowGQX	END=107423313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	107423314	.	C	.	.	LowGQX	.	GT	./.
chr2	107423315	.	T	.	.	LowGQX	END=107423407;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	107429589	.	G	.	.	LowGQX	END=107429688	GT	./.
chr2	107446500	.	C	.	.	LowGQX	END=107446698	GT	./.
chr2	107449019	.	A	.	.	LowGQX	END=107449024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	107449025	.	T	.	.	LowGQX	.	GT	./.
chr2	107449026	.	T	.	.	LowGQX	END=107449081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	107449082	.	A	.	.	LowGQX	END=107449177	GT	./.
chr2	107450503	.	A	.	.	LowGQX	END=107450604	GT	./.
chr2	107459489	.	A	.	.	LowGQX	END=107459492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	107459493	.	A	.	.	LowGQX	END=107459652	GT	./.
chr2	107459653	.	C	.	.	LowGQX	END=107459669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	107459670	.	A	.	.	LowGQX	.	GT	./.
chr2	107459671	.	G	.	.	LowGQX	END=107459673;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	107459674	.	G	.	.	LowGQX	.	GT	./.
chr2	107459675	.	G	.	.	LowGQX	END=107459677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	107459678	.	C	.	.	LowGQX	.	GT	./.
chr2	107459679	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	107459680	.	G	.	.	LowGQX	END=107459696;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	107459697	.	A	.	.	LowGQX	.	GT	./.
chr2	107459698	.	G	.	.	LowGQX	END=107459700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	107459701	.	C	.	.	LowGQX	.	GT	./.
chr2	107459702	.	G	.	.	LowGQX	END=107459709;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	107459710	.	G	.	.	LowGQX	.	GT	./.
chr2	107459711	.	C	.	.	LowGQX	END=107459712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	107459713	.	T	.	.	LowGQX	.	GT	./.
chr2	107459714	.	C	.	.	LowGQX	END=107459720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	107459721	.	A	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	107459722	.	A	.	.	LowGQX	END=107459745;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	107459746	.	T	.	.	LowGQX	END=107459747	GT	./.
chr2	107459748	.	A	.	.	LowGQX	END=107459750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	107459751	.	T	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	107459752	.	A	.	.	LowGQX	END=107459763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	107459764	.	C	.	.	LowGQX	.	GT	./.
chr2	107459765	.	C	.	.	LowGQX	END=107459782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	107459783	.	C	.	.	LowGQX	.	GT	./.
chr2	107459784	.	A	.	.	LowGQX	END=107459786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	107459787	.	A	.	.	LowGQX	.	GT	./.
chr2	107459788	.	T	.	.	LowGQX	END=107459793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	107459794	.	A	.	.	LowGQX	.	GT	./.
chr2	107459795	.	A	.	.	LowGQX	END=107459803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	107459804	.	C	.	.	LowGQX	.	GT	./.
chr2	107459805	.	C	.	.	LowGQX	END=107459809;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	107459810	.	C	.	.	LowGQX	.	GT	./.
chr2	107459811	.	C	.	.	LowGQX	END=107459813;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	107459814	.	A	.	.	LowGQX	END=107460435	GT	./.
chr2	108443399	.	T	.	.	PASS	END=108443412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:69:60
chr2	108443413	.	A	.	.	PASS	END=108443416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:60
chr2	108443417	.	C	.	.	PASS	END=108443503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:81:58
chr2	108443504	.	T	.	.	PASS	END=108443505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:75:58
chr2	108443506	.	G	.	.	PASS	END=108443510;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:96:58
chr2	108443511	.	C	G	608.48	PASS	BaseQRankSum=0.271;DP=45;Dels=0.00;FS=9.438;HRun=1;HaplotypeScore=10.4161;MQ=58;MQ0=0;MQRankSum=-0.719;QD=13.52;ReadPosRankSum=0.719;SB=-350.77	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:20,24:45:99:638,0,462:58:99:0.545
chr2	108443512	.	G	.	.	PASS	END=108443539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:58
chr2	108443540	.	A	.	.	PASS	END=108443546;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:72:58
chr2	108443547	.	T	.	.	PASS	END=108443555;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:66:58
chr2	108452987	.	T	.	.	PASS	END=108453138;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:32
chr2	108453139	.	G	.	.	PASS	END=108453141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:31
chr2	108454712	.	G	.	.	LowGQX;LowMQ	END=108454734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:15:7
chr2	108454735	.	G	.	.	LowGQX;LowMQ	END=108454736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:12:9
chr2	108454737	.	G	.	.	LowGQX;LowMQ	END=108454743;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:15:9
chr2	108454744	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:74:12:9
chr2	108454745	.	T	.	.	LowGQX;LowMQ	END=108454750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:15:9
chr2	108454751	.	C	.	.	LowGQX;LowMQ	END=108454754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:12:9
chr2	108454755	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:69:9:9
chr2	108454756	.	G	.	.	LowGQX;LowMQ	END=108454758;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:12:9
chr2	108454759	.	C	.	.	LowGQX;LowMQ	END=108454760;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:9:10
chr2	108454761	.	C	.	.	LowGQX;LowMQ	END=108454763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:15:10
chr2	108454764	.	A	.	.	LowGQX;LowMQ	END=108454765;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:12:10
chr2	108454766	.	T	.	.	LowGQX;LowMQ	END=108454776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:15:10
chr2	108454777	.	C	.	.	LowGQX;LowMQ	END=108454782;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:12:10
chr2	108454783	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:54:9:10
chr2	108454784	.	A	.	.	LowGQX;LowMQ	END=108454791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:12:10
chr2	108454792	.	G	.	.	LowGQX;LowMQ	END=108454793;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:6:10
chr2	108454794	.	A	.	.	LowGQX;LowMQ	END=108454796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:9:9
chr2	108454797	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:56:0:9
chr2	108454798	.	A	.	.	LowGQX;LowMQ	END=108454800;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:6:9
chr2	108454801	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:56:12:9
chr2	108454802	.	A	.	.	LowGQX;LowMQ	END=108454803;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:6:9
chr2	108454804	.	A	.	.	LowGQX;LowMQ	END=108454805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:9:9
chr2	108454806	.	A	.	.	LowGQX;LowMQ	END=108454808;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:6:8
chr2	108454809	.	C	.	.	LowGQX;LowMQ	END=108454818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:9:8
chr2	108454819	.	T	.	.	LowGQX;LowMQ	END=108454832;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:12:10
chr2	108454833	.	T	.	.	LowGQX;LowMQ	END=108454834;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:9:11
chr2	108454835	.	G	.	.	LowGQX;LowMQ	END=108454841;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:15:11
chr2	108454842	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:33:9:13
chr2	108454843	.	A	.	.	LowGQX;LowMQ	END=108454846;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:12:13
chr2	108454847	.	A	.	.	LowGQX;LowMQ	END=108454848;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:15:13
chr2	108454849	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:32:12:13
chr2	108454850	.	C	.	.	LowGQX;LowMQ	END=108454859;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:15:13
chr2	108454860	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:27:12:14
chr2	108454861	.	C	.	.	LowGQX;LowMQ	END=108454864;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:15:13
chr2	108454865	.	C	.	.	LowGQX;LowMQ	END=108454868;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:9:13
chr2	108454869	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:20:15:14
chr2	108454870	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:20:9:14
chr2	108455236	.	T	.	.	PASS	END=108455283;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:60:41
chr2	108455284	.	A	.	.	PASS	END=108455285;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:78:42
chr2	108455286	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:44:43
chr2	108455287	.	C	.	.	PASS	END=108455304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:69:43
chr2	108455305	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:53:43
chr2	108455306	.	G	.	.	PASS	END=108455348;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:72:41
chr2	108455349	.	G	.	.	PASS	END=108455362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:42
chr2	108455363	.	C	.	.	PASS	END=108455398;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:43
chr2	108455399	.	T	.	.	PASS	END=108455401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:48:43
chr2	108455402	.	T	.	.	PASS	END=108455406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:43
chr2	108455407	.	T	.	.	PASS	END=108455420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:45:42
chr2	108459393	.	T	.	.	LowGQX;LowMQ	END=108459534	GT	./.
chr2	108459535	.	A	.	.	LowGQX;LowMQ	END=108459586;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:3:3
chr2	108459587	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	108459588	.	T	.	.	LowGQX;LowMQ	END=108459606;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:3:3
chr2	108459607	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	108459608	.	T	.	.	LowGQX;LowMQ	END=108459627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:3:3
chr2	108459628	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	108459629	.	G	.	.	LowGQX;LowMQ	END=108459635;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:3:3
chr2	108459636	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	108459637	.	G	.	.	LowGQX;LowMQ	END=108459652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:3:3
chr2	108459653	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	108459654	.	T	.	.	LowGQX;LowMQ	END=108459670;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:3:4
chr2	108459671	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	108459672	.	T	.	.	LowGQX;LowMQ	END=108459685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:3:4
chr2	108459686	.	G	.	.	LowGQX;LowMQ	END=108459762	GT	./.
chr2	108460040	.	G	.	.	LowGQX;LowMQ	END=108460052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:21:10
chr2	108460053	.	T	.	.	LowGQX;LowMQ	END=108460064;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:21:9
chr2	108460065	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:77:30:9
chr2	108460066	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:77:27:9
chr2	108460067	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:77:30:9
chr2	108460068	.	G	.	.	LowGQX;LowMQ	END=108460069;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:24:9
chr2	108460070	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:82:30:9
chr2	108460071	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:82:18:9
chr2	108460072	.	C	.	.	LowGQX;LowMQ	END=108460077;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:24:9
chr2	108460078	.	A	.	.	LowMQ	END=108460081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:30:9
chr2	108460082	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:86:18:9
chr2	108460083	.	G	.	.	LowGQX;LowMQ	END=108460087;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:27:9
chr2	108460088	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:87:30:9
chr2	108460089	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:87:27:9
chr2	108460090	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:87:33:9
chr2	108460091	.	A	.	.	LowGQX;LowMQ	END=108460094;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:21:9
chr2	108460095	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:97:30:8
chr2	108460096	.	C	.	.	LowGQX;LowMQ	END=108460099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:21:8
chr2	108460100	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:101:30:8
chr2	108460101	.	A	.	.	LowGQX;LowMQ	END=108460103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:99:24:8
chr2	108460104	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:105:30:8
chr2	108460105	.	A	.	.	LowGQX;LowMQ	END=108460106;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:21:8
chr2	108460107	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:106:30:8
chr2	108460108	.	T	.	.	LowGQX;LowMQ	END=108460109;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:27:8
chr2	108460110	.	C	.	.	LowMQ	END=108460111;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:30:8
chr2	108460112	.	G	.	.	LowGQX;LowMQ	END=108460118;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:21:8
chr2	108460119	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:109:30:8
chr2	108460120	.	A	.	.	LowGQX;LowMQ	END=108460123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:24:8
chr2	108460124	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:112:30:8
chr2	108460125	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:112:27:8
chr2	108460126	.	A	.	.	LowMQ	END=108460127;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:30:8
chr2	108460128	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:113:27:8
chr2	108460129	.	T	.	.	LowMQ	END=108460131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:30:8
chr2	108460132	.	T	.	.	LowGQX;LowMQ	END=108460137;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:21:7
chr2	108460138	.	T	.	.	LowGQX;LowMQ	END=108460140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:18:7
chr2	108460141	.	C	.	.	LowGQX;LowMQ	END=108460161;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:21:7
chr2	108460162	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:132:18:7
chr2	108460163	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:132:24:7
chr2	108460164	.	G	.	.	LowGQX;LowMQ	END=108460166;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:18:6
chr2	108460167	.	A	.	.	LowGQX;LowMQ	END=108460169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:12:6
chr2	108460170	.	A	.	.	LowGQX;LowMQ	END=108460175;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:136:15:5
chr2	108460176	.	T	.	.	LowGQX;LowMQ	END=108460179;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:9:5
chr2	108460180	.	T	.	.	LowGQX;LowMQ	END=108460181;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:15:5
chr2	108460182	.	G	.	.	LowGQX;LowMQ	END=108460186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:6:5
chr2	108460187	.	G	.	.	LowGQX;LowMQ	END=108460189;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:12:5
chr2	108460190	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:142:6:5
chr2	108460191	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:142:12:5
chr2	108460192	.	T	.	.	LowGQX;LowMQ	END=108460193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:3:5
chr2	108460194	.	G	.	.	LowGQX;LowMQ	END=108460200;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:12:5
chr2	108460201	.	A	.	.	LowGQX;LowMQ	END=108460206;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:9:5
chr2	108460207	.	A	.	.	LowGQX;LowMQ	END=108460208;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:6:5
chr2	108460209	.	G	.	.	LowGQX;LowMQ	END=108460210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:12:5
chr2	108460211	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:120:9:6
chr2	108460212	.	T	.	.	LowGQX;LowMQ	END=108460213;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:120:15:6
chr2	108460214	.	A	.	.	LowGQX;LowMQ	END=108460216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:6:5
chr2	108460217	.	A	.	.	LowGQX;LowMQ	END=108460229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:9:5
chr2	108460230	.	T	.	.	LowGQX;LowMQ	END=108460251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:6:5
chr2	108460252	.	T	.	.	LowGQX;LowMQ	END=108460253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:3:5
chr2	108460254	.	C	.	.	LowGQX;LowMQ	END=108460272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:6:5
chr2	108460273	.	A	.	.	LowGQX;LowMQ	END=108460274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:3:5
chr2	108460275	.	C	.	.	LowGQX;LowMQ	END=108460278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:6:5
chr2	108464785	.	T	.	.	LowGQX;LowMQ	END=108464988	GT	./.
chr2	108464989	.	T	.	.	LowGQX;LowMQ	END=108464990;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:3:8
chr2	108464991	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	108464992	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:23:3:8
chr2	108471006	.	T	.	.	PASS	END=108471078;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:24
chr2	108471079	.	G	.	.	PASS	END=108471099;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:99:30
chr2	108471100	.	G	.	.	PASS	END=108471105;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:41
chr2	108473144	.	C	.	.	LowGQX;LowMQ	END=108473163;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:3:5
chr2	108473164	.	A	.	.	LowGQX;LowMQ	END=108473198;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:3:5
chr2	108473199	.	T	.	.	LowGQX;LowMQ	END=108473231;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:6:4
chr2	108473232	.	C	.	.	LowGQX;LowMQ	END=108473274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:3:4
chr2	108473275	.	A	.	.	LowGQX;LowMQ	END=108473282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:6:4
chr2	108473283	.	C	.	.	LowGQX;LowMQ	END=108473301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:3:4
chr2	108473302	.	G	.	.	LowGQX;LowMQ	END=108473315;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:6:4
chr2	108473316	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:109:3:4
chr2	108473317	.	C	.	.	LowGQX;LowMQ	END=108473327;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:9:4
chr2	108473328	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:116:3:4
chr2	108473329	.	C	.	.	LowGQX;LowMQ	END=108473351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:6:3
chr2	108473352	.	T	.	.	LowGQX;LowMQ	END=108473362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:119:3:3
chr2	108473363	.	A	.	.	LowGQX;LowMQ	END=108473419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:6:4
chr2	108473420	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:123:3:4
chr2	108473421	.	T	.	.	LowGQX;LowMQ	END=108473425;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:6:3
chr2	108473426	.	G	.	.	LowGQX;LowMQ	END=108473450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:91:3:3
chr2	108473451	.	G	.	.	LowGQX;LowMQ	END=108473456;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:3:3
chr2	108473457	.	C	.	.	LowGQX;LowMQ	END=108473470;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:3:3
chr2	108473471	.	T	.	.	LowGQX;LowMQ	.	GT	./.
chr2	108473472	.	A	.	.	LowGQX;LowMQ	END=108473477;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:3:3
chr2	108473478	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	108473479	.	C	.	.	LowGQX;LowMQ	END=108473482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:3:3
chr2	108473483	.	A	.	.	LowGQX;LowMQ	.	GT	./.
chr2	108473484	.	A	.	.	LowGQX;LowMQ	END=108473492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:3:3
chr2	108473493	.	C	.	.	LowGQX;LowMQ	.	GT	./.
chr2	108475498	.	T	.	.	LowMQ	END=108475509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:78:19
chr2	108475510	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:81:20
chr2	108475511	.	A	.	.	LowMQ	END=108475519;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:81:19
chr2	108475520	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:62:58:19
chr2	108475521	.	A	.	.	LowMQ	END=108475537;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:78:18
chr2	108475538	.	A	.	.	LowMQ	END=108475539;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:66:18
chr2	108475540	.	C	.	.	LowMQ	END=108475552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:84:18
chr2	108475553	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:73:68:18
chr2	108475554	.	T	.	.	LowMQ	END=108475583;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:84:18
chr2	108475584	.	C	.	.	LowMQ	END=108475601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:103:93:15
chr2	108475602	.	C	.	.	LowMQ	END=108475632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:84:14
chr2	108475633	.	C	.	.	LowMQ	END=108475634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:70:14
chr2	108475635	.	T	.	.	LowMQ	END=108475644;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:72:13
chr2	108475645	.	T	.	.	LowMQ	END=108475647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:81:13
chr2	108475648	.	C	.	.	LowMQ	END=108475652;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:72:13
chr2	108475653	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:143:63:13
chr2	108475654	.	T	.	.	LowMQ	END=108475674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:75:13
chr2	108475675	.	T	.	.	LowMQ	END=108475677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:140:63:13
chr2	108475678	.	T	.	.	LowMQ	END=108475685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:72:13
chr2	108475686	.	T	.	.	LowMQ	END=108475688;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:90:14
chr2	108475689	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:146:53:14
chr2	108475690	.	C	.	.	LowMQ	END=108475700;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:75:14
chr2	108475701	.	T	.	.	LowMQ	END=108475710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:90:14
chr2	108475711	.	A	.	.	LowMQ	END=108475744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:152:99:14
chr2	108475745	.	T	.	.	LowMQ	END=108475751;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:16
chr2	108475834	.	G	.	.	PASS	END=108475835;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:20
chr2	108475836	.	T	.	.	LowMQ	END=108475837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:19
chr2	108475838	.	T	.	.	PASS	END=108475839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:20
chr2	108475840	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:112:99:19
chr2	108475841	.	C	.	.	PASS	END=108475860;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:20
chr2	108475861	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:83:99:24
chr2	108475862	.	A	.	.	PASS	END=108475922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:78:27
chr2	108475923	.	T	.	.	PASS	END=108475940;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:41:93:36
chr2	108475941	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:41:74:41
chr2	108475942	.	A	.	.	PASS	END=108475957;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:87:41
chr2	108475958	.	A	G	354.96	PASS	BaseQRankSum=-2.287;DP=35;Dels=0.00;FS=3.333;HRun=1;HaplotypeScore=6.6709;MQ=42;MQ0=0;MQRankSum=-1.495;QD=10.14;ReadPosRankSum=-0.450;SB=-173.61	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:16,17:35:99:385,0,484:42:99:0.515
chr2	108475959	.	G	.	.	PASS	END=108475977;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:84:41
chr2	108475978	.	T	.	.	PASS	END=108476010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:93:41
chr2	108476177	.	G	.	.	PASS	END=108476259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:40
chr2	108476260	.	C	.	.	PASS	END=108476268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:78:40
chr2	108476269	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:71:40
chr2	108476270	.	T	.	.	PASS	END=108476275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:90:39
chr2	108476276	.	A	.	.	PASS	END=108476277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:37
chr2	108476278	.	T	.	.	PASS	END=108476280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:45:34
chr2	108476281	.	G	.	.	PASS	END=108476289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:34
chr2	108476290	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:15:34
chr2	108476291	.	T	.	.	PASS	END=108476301;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:34
chr2	108477190	.	T	.	.	PASS	END=108477228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:37
chr2	108477229	.	G	.	.	PASS	END=108477305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:28
chr2	108477306	.	A	.	.	PASS	END=108477349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:99:23
chr2	108477350	.	T	.	.	PASS	END=108477370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:20
chr2	108477371	.	T	.	.	LowMQ	END=108477383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:18
chr2	108477618	.	C	.	.	LowGQX;LowMQ	END=108477623;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:15:7
chr2	108477624	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:117:12:7
chr2	108477625	.	A	.	.	LowGQX;LowMQ	END=108477631;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:15:7
chr2	108477632	.	A	.	.	LowGQX;LowMQ	END=108477637;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:21:7
chr2	108477638	.	C	.	.	LowGQX;LowMQ	END=108477641;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:18:7
chr2	108477642	.	G	.	.	LowGQX;LowMQ	END=108477646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:21:7
chr2	108477647	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:168:33:7
chr2	108477648	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:168:27:7
chr2	108477649	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:167:30:7
chr2	108477650	.	G	.	.	LowGQX;LowMQ	END=108477653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:169:24:7
chr2	108477654	.	C	.	.	LowMQ	END=108477655;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:173:30:7
chr2	108477656	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:173:27:7
chr2	108477657	.	A	.	.	LowMQ	END=108477659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:30:7
chr2	108477660	.	T	.	.	LowGQX;LowMQ	END=108477663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:183:27:7
chr2	108477664	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:185:30:7
chr2	108477665	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:183:27:7
chr2	108477666	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:184:33:7
chr2	108477667	.	A	.	.	LowGQX;LowMQ	END=108477669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:190:24:7
chr2	108477670	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:190:30:7
chr2	108477671	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:191:27:7
chr2	108477672	.	A	.	.	LowMQ	END=108477677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:30:7
chr2	108477678	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:183:27:7
chr2	108477679	.	C	.	.	LowMQ	END=108477681;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:30:7
chr2	108477682	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:179:18:7
chr2	108477683	.	C	.	.	LowMQ	END=108477684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:182:30:7
chr2	108477685	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:185:24:7
chr2	108477686	.	G	.	.	LowMQ	END=108477689;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:181:30:7
chr2	108477690	.	C	.	.	LowGQX;LowMQ	END=108477694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:172:24:7
chr2	108477695	.	G	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:175:30:7
chr2	108477696	.	C	.	.	LowGQX;LowMQ	END=108477710;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:21:6
chr2	108477711	.	T	.	.	LowGQX;LowMQ	END=108477712;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:18:6
chr2	108477713	.	A	.	.	LowGQX;LowMQ	END=108477722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:21:6
chr2	108477723	.	T	.	.	LowMQ	END=108477724;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:30:7
chr2	108477725	.	G	.	.	LowGQX;LowMQ	END=108477729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:24:7
chr2	108477730	.	T	.	.	LowMQ	END=108477736;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:197:39:8
chr2	108477737	.	A	.	.	LowMQ	END=108477744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:201:36:8
chr2	108477745	.	T	.	.	LowMQ	END=108477756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:39:8
chr2	108477757	.	A	.	.	LowMQ	END=108477776;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:211:42:8
chr2	108477777	.	A	.	.	LowMQ	END=108477781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:39:8
chr2	108477782	.	G	.	.	LowMQ	END=108477787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:36:8
chr2	108478049	.	G	.	.	PASS	END=108478124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:29
chr2	108478125	.	C	.	.	PASS	END=108478141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:87:27
chr2	108478142	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:51:50:25
chr2	108478143	.	T	.	.	PASS	END=108478149;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:75:25
chr2	108478150	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:49:49:25
chr2	108478151	.	A	.	.	PASS	END=108478165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:87:27
chr2	108478166	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:56:59:28
chr2	108478167	.	A	.	.	PASS	END=108478170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:84:28
chr2	108478171	.	A	.	.	PASS	END=108478172;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:65:28
chr2	108478173	.	T	.	.	PASS	END=108478196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:78:28
chr2	108479137	.	G	.	.	LowGQX	END=108479142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:9:23
chr2	108479143	.	T	.	.	LowGQX	END=108479156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:9:12:28
chr2	108479157	.	C	.	.	LowGQX	END=108479169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:18:27
chr2	108479170	.	G	.	.	LowGQX	END=108479173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:27:28
chr2	108479174	.	A	.	.	PASS	END=108479191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:30:28
chr2	108479192	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:3:33
chr2	108479193	.	T	.	.	PASS	END=108479203;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:30:33
chr2	108479204	.	A	.	.	PASS	END=108479218;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:33
chr2	108479219	.	C	.	.	PASS	END=108479241;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:45:30
chr2	108479242	.	A	.	.	PASS	END=108479282;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:54:30
chr2	108479283	.	C	.	.	PASS	END=108479325;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:60:30
chr2	108479343	.	T	.	.	PASS	END=108479377;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:66:31
chr2	108479378	.	C	.	.	PASS	END=108479422;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:30
chr2	108479423	.	C	.	.	PASS	END=108479431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:29
chr2	108479432	.	G	A	159.80	PASS	BaseQRankSum=3.106;DP=46;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.6809;MQ=29;MQ0=8;MQRankSum=-1.344;QD=3.47;ReadPosRankSum=1.971;SB=-120.16	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:28,18:46:99:190,0,575:29:99:0.391
chr2	108479433	.	C	.	.	PASS	END=108479480;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:69:26
chr2	108479481	.	C	.	.	PASS	END=108479486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:63:25
chr2	108479487	.	A	T	131.63	PASS	BaseQRankSum=0.787;DP=44;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=25;MQ0=15;MQRankSum=-1.011;QD=2.99;ReadPosRankSum=-1.596;SB=-44.80	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:27,17:44:99:162,0,468:25:99:0.386
chr2	108479488	.	G	.	.	PASS	END=108479496;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:57:23
chr2	108482614	.	T	.	.	LowGQX;LowMQ	END=108482629;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:78:21:8
chr2	108482630	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:80:18:9
chr2	108482631	.	T	.	.	LowGQX;LowMQ	END=108482632;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:24:8
chr2	108482633	.	T	.	.	LowGQX;LowMQ	END=108482634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:18:8
chr2	108482635	.	T	.	.	LowGQX;LowMQ	END=108482643;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:21:9
chr2	108482644	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:74:18:9
chr2	108482645	.	G	.	.	LowGQX;LowMQ	END=108482647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:24:9
chr2	108482648	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:71:15:9
chr2	108482649	.	G	.	.	LowGQX;LowMQ	END=108482674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:21:9
chr2	108482675	.	C	.	.	LowMQ	END=108482677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:30:9
chr2	108482678	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:72:27:9
chr2	108482679	.	A	.	.	LowMQ	END=108482680;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:30:9
chr2	108482681	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:72:27:9
chr2	108482682	.	T	.	.	LowMQ	END=108482683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:30:9
chr2	108482684	.	A	.	.	LowGQX;LowMQ	END=108482685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:27:9
chr2	108482686	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:71:30:9
chr2	108482687	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:71:24:9
chr2	108482688	.	T	.	.	LowMQ	END=108482691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:30:9
chr2	108482692	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:69:27:10
chr2	108482693	.	T	.	.	LowMQ	END=108482698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:30:9
chr2	108482699	.	T	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:71:27:9
chr2	108482700	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:71:30:9
chr2	108482701	.	G	.	.	LowGQX;LowMQ	END=108482702;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:24:9
chr2	108482703	.	C	.	.	LowMQ	END=108482704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:30:9
chr2	108482705	.	C	.	.	LowGQX;LowMQ	END=108482707;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:27:10
chr2	108482708	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:68:30:10
chr2	108482709	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:68:24:10
chr2	108482710	.	A	.	.	LowMQ	END=108482717;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:30:10
chr2	108482718	.	G	.	.	LowGQX;LowMQ	END=108482720;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:24:10
chr2	108482721	.	C	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:66:30:10
chr2	108482722	.	C	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:64:27:10
chr2	108482723	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:63:30:10
chr2	108482724	.	G	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:63:24:10
chr2	108482725	.	A	.	.	LowGQX;LowMQ	.	GT:DP:GQX:MQ	0/0:64:18:10
chr2	108482726	.	C	.	.	LowGQX;LowMQ	END=108482739;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:21:9
chr2	108482740	.	G	.	.	LowGQX;LowMQ	END=108482750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:18:9
chr2	108482751	.	T	.	.	LowGQX;LowMQ	END=108482754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:15:9
chr2	108482755	.	A	.	.	LowGQX;LowMQ	END=108482759;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:12:8
chr2	108482760	.	T	.	.	LowGQX;LowMQ	END=108482775;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:9:9
chr2	108482776	.	T	.	.	LowGQX;LowMQ	END=108482781;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:9:10
chr2	108484130	.	C	.	.	LowGQX	END=108484151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:23
chr2	108484152	.	T	.	.	LowGQX	.	GT	./.
chr2	108484153	.	A	.	.	LowGQX	END=108484232;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:23
chr2	108484233	.	A	.	4.33	LowGQX	DP=1;MQ=23;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:23:0
chr2	108484234	.	T	.	.	LowGQX	.	GT	./.
chr2	108484235	.	T	.	.	LowGQX	END=108484277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:23
chr2	108484278	.	A	.	.	LowGQX	END=108484297	GT	./.
chr2	108486277	.	A	.	.	PASS	END=108486280;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:57:39
chr2	108486281	.	T	.	.	PASS	END=108486291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:35
chr2	108486292	.	G	.	.	PASS	END=108486322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:78:32
chr2	108486323	.	C	.	.	PASS	END=108486324;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:75:32
chr2	108486325	.	T	.	.	PASS	END=108486336;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:93:31
chr2	108486337	.	A	.	.	PASS	END=108486338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:51:32
chr2	108486339	.	T	.	.	PASS	END=108486341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:72:30
chr2	108486342	.	C	.	.	PASS	END=108486344;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:63:29
chr2	108486345	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:54:28
chr2	108486346	.	T	.	.	PASS	END=108486347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:60:28
chr2	108486348	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:58:42:28
chr2	108486349	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:59:57:28
chr2	108486350	.	G	.	.	PASS	END=108486351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:63:27
chr2	108486352	.	C	.	.	PASS	END=108486353;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:75:26
chr2	108486354	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:67:51:26
chr2	108486355	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:67:75:26
chr2	108486356	.	T	.	.	PASS	END=108486358;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:70:54:26
chr2	108486359	.	G	.	.	PASS	END=108486381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:78:21
chr2	108486382	.	A	.	.	PASS	END=108486408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:80:20
chr2	108486409	.	A	.	.	LowMQ	END=108486435;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:87:16
chr2	108487160	.	G	.	.	PASS	END=108487167;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:99:37
chr2	108487168	.	C	.	.	PASS	END=108487201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:44
chr2	108487202	.	T	.	.	PASS	END=108487309;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:47
chr2	108487310	.	G	.	.	PASS	END=108487329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:110:99:36
chr2	108487330	.	A	G	1441.31	PASS	BaseQRankSum=-0.616;DP=118;Dels=0.00;FS=1.965;HRun=0;HaplotypeScore=10.4161;MQ=36;MQ0=22;MQRankSum=0.862;QD=12.21;ReadPosRankSum=-2.034;SB=-465.04	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:61,56:118:99:1471,0,987:36:99:0.479
chr2	108487331	.	T	.	.	PASS	END=108487390;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:27
chr2	108487391	.	A	.	.	PASS	END=108487406;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:26
chr2	108487407	.	G	.	.	PASS	END=108487486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:28
chr2	108487487	.	T	.	.	PASS	END=108487561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:132:99:37
chr2	108487562	.	T	.	.	PASS	END=108487825;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:41
chr2	108487826	.	C	T	771.91	PASS	BaseQRankSum=3.087;DP=130;Dels=0.00;FS=39.636;HRun=0;HaplotypeScore=7.7126;MQ=48;MQ0=2;MQRankSum=-9.237;QD=5.94;ReadPosRankSum=-1.673;SB=-112.08	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:81,48:130:99:802,0,2201:48:99:0.372
chr2	108487827	.	C	.	.	PASS	END=108487828;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:118:99:49
chr2	108487829	.	G	C	651.58	SB	BaseQRankSum=1.664;DP=127;Dels=0.00;FS=57.713;HRun=0;HaplotypeScore=5.8612;MQ=50;MQ0=2;MQRankSum=-9.047;QD=5.13;ReadPosRankSum=-0.907;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:84,43:127:99:682,0,2647:50:99:0.339
chr2	108487830	.	T	.	.	PASS	END=108487970;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:51
chr2	108487971	.	C	.	.	PASS	END=108487997;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:37
chr2	108487998	.	C	.	.	PASS	END=108488028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:179:99:31
chr2	108488029	.	A	.	.	PASS	END=108488055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:250:99:28
chr2	108488056	.	A	.	.	PASS	END=108488119;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:327:99:27
chr2	108488120	.	A	.	.	PASS	END=108488178;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:391:99:30
chr2	108488179	.	C	.	.	PASS	END=108488236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:394:99:41
chr2	108488237	.	G	.	.	PASS	END=108488412;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:516:99:47
chr2	108488413	.	C	.	.	PASS	END=108488516;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:411:99:41
chr2	108488517	.	A	.	.	PASS	END=108488569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:323:99:44
chr2	108488570	.	T	.	.	PASS	END=108488697;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:274:99:36
chr2	108488698	.	C	.	.	PASS	END=108488749;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:238:99:30
chr2	108488750	.	T	.	.	PASS	END=108488812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:21
chr2	108488813	.	G	.	.	PASS	END=108488823;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:261:99:20
chr2	108488824	.	A	.	.	LowMQ	END=108488945;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:244:99:17
chr2	108488946	.	G	.	.	PASS	END=108488947;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:264:99:20
chr2	108488948	.	A	.	.	LowMQ	END=108488958;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:19
chr2	108488959	.	C	.	.	PASS	END=108489065;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:237:99:20
chr2	108489066	.	C	.	.	PASS	END=108489088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:241:99:27
chr2	108489089	.	A	.	.	PASS	END=108489145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:36
chr2	108489146	.	C	.	.	PASS	END=108489187;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:45
chr2	108489188	.	A	.	.	PASS	END=108489233;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:142:99:50
chr2	108489234	.	G	.	.	PASS	END=108489289;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:39
chr2	108489290	.	C	.	.	PASS	END=108489305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:31
chr2	108489306	.	A	.	.	PASS	END=108489380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:22
chr2	108489381	.	A	.	.	PASS	END=108489384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:23
chr2	108496423	.	G	.	.	LowGQX	END=108496563	GT	./.
chr2	108499056	.	A	.	.	LowGQX	END=108499395	GT	./.
chr2	108499585	.	A	.	.	LowGQX	END=108499684	GT	./.
chr2	108507132	.	T	.	.	LowGQX	END=108507231	GT	./.
chr2	108604610	.	A	.	.	PASS	END=108604647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:143:99:60
chr2	108604648	.	G	.	.	PASS	END=108604771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	108604772	.	G	.	.	PASS	END=108604791;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:99:60
chr2	108608560	.	A	.	.	PASS	END=108608576;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	108608577	.	G	.	.	PASS	END=108608625;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	108608626	.	C	.	.	PASS	END=108608671;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:99:60
chr2	108608672	.	T	.	.	PASS	END=108608677;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	108609426	.	A	.	.	PASS	END=108609513;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:60
chr2	108609514	.	G	.	.	PASS	END=108609585;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:204:99:60
chr2	108614292	.	A	.	.	PASS	END=108614364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:101:99:60
chr2	108614365	.	C	.	.	PASS	END=108614378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:60
chr2	108614379	.	G	.	.	PASS	END=108614393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:60
chr2	108614394	.	T	.	.	PASS	END=108614444;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:90:60
chr2	108618351	.	A	.	.	PASS	END=108618375;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:60
chr2	108618376	.	G	.	.	PASS	END=108618450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	108618451	.	T	.	.	PASS	END=108618476;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:60
chr2	108618477	.	T	.	.	PASS	END=108618498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:98:99:60
chr2	108622503	.	A	.	.	PASS	END=108622532;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:174:99:60
chr2	108622533	.	A	.	.	PASS	END=108622646;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:217:99:60
chr2	108622647	.	G	.	.	PASS	END=108622660;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr2	108624919	.	A	.	.	PASS	END=108624941;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:99:60
chr2	108624942	.	G	.	.	PASS	END=108625071;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:60
chr2	108625072	.	T	.	.	PASS	END=108625129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr2	108625130	.	A	.	.	PASS	END=108625140;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:164:99:60
chr2	108626686	.	A	.	.	PASS	END=108626719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:60
chr2	108626720	.	A	.	.	PASS	END=108626778;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:60
chr2	108626779	.	T	.	.	PASS	END=108627116;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:251:99:60
chr2	108627117	.	G	.	.	PASS	END=108627278;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:203:99:60
chr2	108627279	.	A	.	.	PASS	END=108627302;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	108627303	.	G	.	.	PASS	END=108627319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	108863649	.	C	.	.	LowGQX	END=108863848	GT	./.
chr2	108868819	.	A	.	.	LowGQX	END=108868951	GT	./.
chr2	108869799	.	A	.	.	LowGQX	END=108869851;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	108869852	.	T	.	.	LowGQX	END=108869958	GT	./.
chr2	108872026	.	A	.	.	LowGQX	END=108872156	GT	./.
chr2	108875118	.	A	.	.	LowGQX	END=108875144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	108875145	.	T	.	.	LowGQX	.	GT	./.
chr2	108875146	.	T	.	.	LowGQX	END=108875214;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	108875215	.	T	.	.	LowGQX	END=108875287	GT	./.
chr2	108875421	.	G	.	.	LowGQX	END=108875602	GT	./.
chr2	108877023	.	G	.	.	LowGQX	END=108877136	GT	./.
chr2	108881279	.	A	.	.	LowGQX	END=108881463	GT	./.
chr2	108881693	.	A	.	.	LowGQX	END=108881809	GT	./.
chr2	108910122	.	C	.	.	PASS	END=108910271;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:205:99:60
chr2	108910272	.	C	.	.	PASS	END=108910276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	108910683	.	A	.	.	PASS	END=108910734;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	108910735	.	G	.	.	PASS	END=108910777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	108910778	.	T	.	.	PASS	END=108910812;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:77:60
chr2	108915020	.	T	.	.	PASS	END=108915034;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:45:78:60
chr2	108915035	.	A	.	.	PASS	END=108915037;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:75:60
chr2	108915038	.	A	.	.	PASS	END=108915084;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:87:60
chr2	108915085	.	G	.	.	PASS	END=108915115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:54:90:60
chr2	108915116	.	A	.	.	PASS	END=108915135;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	108915136	.	T	C	2055.92	PASS	DP=70;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=6.6284;MQ=60;MQ0=0;QD=29.37;SB=-1003.17	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,70:70:99:2089,160,0:60:99:1.000
chr2	108915137	.	C	.	.	PASS	END=108915170;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	108917251	.	G	.	.	PASS	END=108917259;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr2	108917260	.	C	.	.	PASS	END=108917284;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:87:60
chr2	108917285	.	A	.	.	PASS	END=108917313;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	108917314	.	A	.	.	PASS	END=108917356;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	108917357	.	T	.	.	PASS	END=108917393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	108921028	.	A	.	.	PASS	END=108921063;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:97:99:60
chr2	108921064	.	T	.	.	PASS	END=108921110;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:60
chr2	108921111	.	C	.	.	PASS	END=108921158;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	108921626	.	A	.	.	PASS	END=108921725;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	108921869	.	A	.	.	PASS	END=108921902;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr2	108921903	.	G	.	.	PASS	END=108922023;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:216:99:60
chr2	108922024	.	C	.	.	PASS	END=108922059;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:154:99:60
chr2	108922060	.	G	.	.	PASS	END=108922093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:60
chr2	108922094	.	C	.	.	PASS	END=108922113;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:96:99:60
chr2	108922114	.	A	.	.	PASS	END=108922125;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	108924806	.	A	.	.	PASS	END=108924842;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:86:99:60
chr2	108924843	.	G	.	.	PASS	END=108924903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	108924904	.	T	.	.	PASS	END=108924922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:88:99:60
chr2	108994792	.	T	.	.	LowGQX	END=108994964	GT	./.
chr2	108998216	.	A	.	.	LowGQX	END=108998385	GT	./.
chr2	108998839	.	A	.	.	LowGQX	END=108998940	GT	./.
chr2	108999547	.	A	.	.	LowGQX	END=108999726	GT	./.
chr2	108999870	.	A	.	.	LowGQX	END=108999969	GT	./.
chr2	109002646	.	A	.	.	LowGQX	END=109002845	GT	./.
chr2	109003774	.	A	.	.	LowGQX	END=109003890	GT	./.
chr2	109065688	.	C	.	.	LowGQX	END=109065690;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109065691	.	T	.	.	LowGQX	.	GT	./.
chr2	109065692	.	G	.	.	LowGQX	END=109065704;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109065705	.	T	.	.	LowGQX	END=109065764	GT	./.
chr2	109065765	.	A	.	.	LowGQX	END=109065768;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109065769	.	A	.	.	LowGQX	.	GT	./.
chr2	109065770	.	G	.	.	LowGQX	END=109065773;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109065774	.	T	.	.	LowGQX	.	GT	./.
chr2	109065775	.	C	.	.	LowGQX	END=109065783;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109065784	.	G	.	.	LowGQX	.	GT	./.
chr2	109065785	.	A	.	.	LowGQX	END=109065787;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109066068	.	G	.	.	LowGQX	END=109066167	GT	./.
chr2	109067477	.	C	.	.	LowGQX	END=109067576	GT	./.
chr2	109068783	.	T	.	.	LowGQX	END=109068938	GT	./.
chr2	109085374	.	T	.	.	LowGQX	END=109085401;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109085402	.	T	.	.	LowGQX	.	GT	./.
chr2	109085403	.	A	.	.	LowGQX	END=109085492;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109085493	.	T	.	.	LowGQX	END=109085542	GT	./.
chr2	109086105	.	A	.	.	LowGQX	END=109086110	GT	./.
chr2	109086111	.	C	.	.	LowGQX	END=109086124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086125	.	G	.	.	LowGQX	.	GT	./.
chr2	109086126	.	G	.	.	LowGQX	END=109086144;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086145	.	G	.	.	LowGQX	.	GT	./.
chr2	109086146	.	G	.	.	LowGQX	END=109086147;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086148	.	A	.	.	LowGQX	.	GT	./.
chr2	109086149	.	C	.	.	LowGQX	END=109086152;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086153	.	C	.	.	LowGQX	.	GT	./.
chr2	109086154	.	A	.	.	LowGQX	END=109086156;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086157	.	T	.	.	LowGQX	.	GT	./.
chr2	109086158	.	A	.	.	LowGQX	END=109086164;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086165	.	A	.	.	LowGQX	END=109086166	GT	./.
chr2	109086167	.	G	.	.	LowGQX	END=109086174;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086175	.	A	.	.	LowGQX	.	GT	./.
chr2	109086176	.	A	.	.	LowGQX	END=109086188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086189	.	A	.	.	LowGQX	.	GT	./.
chr2	109086190	.	A	.	.	LowGQX	END=109086196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086197	.	T	.	.	LowGQX	.	GT	./.
chr2	109086198	.	T	.	.	LowGQX	END=109086201;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086202	.	G	.	.	LowGQX	END=109086203	GT	./.
chr2	109086204	.	C	.	.	LowGQX	END=109086205;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086206	.	G	.	.	LowGQX	.	GT	./.
chr2	109086207	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086208	.	A	.	.	LowGQX	.	GT	./.
chr2	109086209	.	C	.	.	LowGQX	END=109086210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086211	.	T	.	.	LowGQX	END=109086212	GT	./.
chr2	109086213	.	C	.	.	LowGQX	END=109086219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086220	.	C	.	.	LowGQX	.	GT	./.
chr2	109086221	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086222	.	G	.	.	LowGQX	END=109086224	GT	./.
chr2	109086225	.	A	.	.	LowGQX	END=109086226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086227	.	G	.	.	LowGQX	.	GT	./.
chr2	109086228	.	A	.	.	LowGQX	END=109086238;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086239	.	T	.	.	LowGQX	.	GT	./.
chr2	109086240	.	T	.	.	LowGQX	END=109086246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086247	.	G	.	.	LowGQX	END=109086248	GT	./.
chr2	109086249	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086250	.	G	.	.	LowGQX	END=109086251	GT	./.
chr2	109086252	.	T	.	.	LowGQX	END=109086260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086261	.	C	.	.	LowGQX	.	GT	./.
chr2	109086262	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086263	.	A	.	.	LowGQX	END=109086264	GT	./.
chr2	109086265	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086266	.	A	.	.	LowGQX	.	GT	./.
chr2	109086267	.	A	.	.	LowGQX	END=109086269;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086270	.	C	.	.	LowGQX	END=109086271	GT	./.
chr2	109086272	.	C	.	.	LowGQX	END=109086274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086275	.	T	.	.	LowGQX	.	GT	./.
chr2	109086276	.	T	.	.	LowGQX	END=109086277;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086278	.	G	.	.	LowGQX	.	GT	./.
chr2	109086279	.	A	.	.	LowGQX	END=109086281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086282	.	T	.	.	LowGQX	.	GT	./.
chr2	109086283	.	T	.	.	LowGQX	END=109086287;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086288	.	A	.	.	LowGQX	.	GT	./.
chr2	109086289	.	A	.	.	LowGQX	END=109086292;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086293	.	C	.	.	LowGQX	END=109086294	GT	./.
chr2	109086295	.	T	.	.	LowGQX	END=109086311;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086312	.	C	.	.	LowGQX	.	GT	./.
chr2	109086313	.	T	.	.	LowGQX	END=109086314;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086315	.	A	.	.	LowGQX	.	GT	./.
chr2	109086316	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086317	.	G	.	.	LowGQX	.	GT	./.
chr2	109086318	.	A	.	.	LowGQX	END=109086320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086321	.	A	.	.	LowGQX	.	GT	./.
chr2	109086322	.	T	.	.	LowGQX	END=109086323;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086324	.	T	.	.	LowGQX	.	GT	./.
chr2	109086325	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086326	.	A	.	.	LowGQX	.	GT	./.
chr2	109086327	.	A	.	.	LowGQX	END=109086329;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086330	.	A	.	.	LowGQX	END=109086331	GT	./.
chr2	109086332	.	C	.	.	LowGQX	END=109086338;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086339	.	A	.	.	LowGQX	.	GT	./.
chr2	109086340	.	A	.	.	LowGQX	END=109086345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086346	.	T	.	.	LowGQX	.	GT	./.
chr2	109086347	.	G	.	.	LowGQX	END=109086351;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086352	.	A	.	.	LowGQX	END=109086354	GT	./.
chr2	109086355	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086356	.	A	.	.	LowGQX	END=109086358	GT	./.
chr2	109086359	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086360	.	C	.	.	LowGQX	.	GT	./.
chr2	109086361	.	A	.	.	LowGQX	END=109086363;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086364	.	C	.	.	LowGQX	.	GT	./.
chr2	109086365	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086366	.	T	.	.	LowGQX	.	GT	./.
chr2	109086367	.	T	.	.	LowGQX	END=109086370;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086371	.	G	.	.	LowGQX	.	GT	./.
chr2	109086372	.	A	.	.	LowGQX	END=109086382;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086383	.	T	.	.	LowGQX	.	GT	./.
chr2	109086384	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086385	.	T	.	.	LowGQX	.	GT	./.
chr2	109086386	.	C	.	.	LowGQX	END=109086391;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086392	.	A	.	.	LowGQX	END=109086393	GT	./.
chr2	109086394	.	G	.	.	LowGQX	END=109086396;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086397	.	A	.	.	LowGQX	.	GT	./.
chr2	109086398	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086399	.	T	.	.	LowGQX	.	GT	./.
chr2	109086400	.	A	.	.	LowGQX	END=109086411;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109086412	.	T	.	.	LowGQX	END=109087037	GT	./.
chr2	109087038	.	C	.	.	LowGQX	END=109087074;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	109087075	.	G	T	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:60:3:1.000
chr2	109087076	.	G	.	.	LowGQX	END=109087089;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	109087090	.	A	.	.	LowGQX	END=109088574	GT	./.
chr2	109089211	.	T	.	.	LowGQX	END=109089236;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109089237	.	T	.	.	LowGQX	.	GT	./.
chr2	109089238	.	G	.	.	LowGQX	END=109089244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109089245	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	109089246	.	T	.	.	LowGQX	END=109089256;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	109089257	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	109089258	.	T	.	.	LowGQX	END=109089272;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	109089273	.	T	.	.	LowGQX	.	GT	./.
chr2	109089274	.	A	.	.	LowGQX	END=109089281;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	109089282	.	G	.	.	LowGQX	.	GT	./.
chr2	109089283	.	G	.	.	LowGQX	END=109089319;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	109089320	.	C	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	109089321	.	T	.	.	LowGQX	END=109089328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	109089329	.	C	.	.	LowGQX	.	GT	./.
chr2	109089330	.	A	.	.	LowGQX	END=109089341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	109089342	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	109089343	.	G	.	.	LowGQX	END=109089345;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	109089346	.	G	.	.	LowGQX	.	GT	./.
chr2	109089347	.	A	.	.	LowGQX	END=109089350;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109089351	.	A	.	.	LowGQX	.	GT	./.
chr2	109089352	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109089353	.	T	.	.	LowGQX	.	GT	./.
chr2	109089354	.	A	.	.	LowGQX	END=109089355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109089356	.	G	.	.	LowGQX	.	GT	./.
chr2	109089357	.	T	.	.	LowGQX	END=109089361;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109089362	.	A	.	.	LowGQX	.	GT	./.
chr2	109089363	.	T	.	.	LowGQX	END=109089369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109091989	.	A	.	.	LowGQX	END=109092308	GT	./.
chr2	109098151	.	A	.	.	LowGQX	END=109098274	GT	./.
chr2	109098741	.	A	.	.	LowGQX	END=109098909	GT	./.
chr2	109099466	.	A	.	.	LowGQX	END=109099624	GT	./.
chr2	109100573	.	T	.	.	LowGQX	END=109100769	GT	./.
chr2	109102090	.	A	.	.	LowGQX	END=109102194	GT	./.
chr2	109102276	.	T	.	.	LowGQX	END=109102375	GT	./.
chr2	109102846	.	A	.	.	LowGQX	END=109102945	GT	./.
chr2	109102965	.	A	.	.	LowGQX	END=109103106	GT	./.
chr2	109104153	.	A	.	.	LowGQX	END=109104246	GT	./.
chr2	109104247	.	G	.	.	LowGQX	END=109104310;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109104311	.	C	.	.	LowGQX	.	GT	./.
chr2	109104312	.	C	.	.	LowGQX	END=109104318;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109104319	.	C	.	.	LowGQX	.	GT	./.
chr2	109104320	.	A	.	.	LowGQX	END=109104322;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109106292	.	A	.	.	LowGQX	END=109106380;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	109106381	.	A	G	44.20	LowGQ;LowGQX;SB	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=22.10;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:6.02:75,6,0:60:6:1.000
chr2	109106382	.	A	.	.	LowGQX	END=109106423;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109106424	.	A	.	.	LowGQX	END=109106472	GT	./.
chr2	109109027	.	A	.	.	LowGQX	END=109109248	GT	./.
chr2	109111745	.	A	.	.	LowGQX	END=109111771;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	109111772	.	G	.	33	LowGQX	DP=2;MQ=60;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:1:2:3.01:60:3
chr2	109111773	.	A	.	.	LowGQX	END=109111922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	109111923	.	T	.	.	LowGQX	END=109111943	GT	./.
chr2	109113424	.	A	.	.	LowGQX	END=109113426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:48
chr2	109113427	.	G	.	.	LowGQX	.	GT	./.
chr2	109113428	.	C	.	.	LowGQX	END=109113431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:48
chr2	109113432	.	C	.	.	LowGQX	.	GT	./.
chr2	109113433	.	A	.	.	LowGQX	END=109113434;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	109113435	.	T	.	.	LowGQX	.	GT	./.
chr2	109113436	.	A	.	.	LowGQX	END=109113445;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	109113446	.	G	.	.	LowGQX	.	GT	./.
chr2	109113447	.	A	.	.	LowGQX	END=109113450;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	109113451	.	T	.	.	LowGQX	.	GT	./.
chr2	109113452	.	A	.	.	LowGQX	END=109113453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	109113454	.	C	.	.	LowGQX	.	GT	./.
chr2	109113455	.	A	.	.	LowGQX	END=109113460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	109113461	.	G	.	.	LowGQX	.	GT	./.
chr2	109113462	.	A	.	.	LowGQX	END=109113464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	109113465	.	T	.	.	LowGQX	.	GT	./.
chr2	109113466	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:47
chr2	109113467	.	G	.	.	LowGQX	END=109113468	GT	./.
chr2	109113469	.	T	.	.	LowGQX	END=109113482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	109113483	.	C	.	.	LowGQX	.	GT	./.
chr2	109113484	.	C	.	.	LowGQX	END=109113486;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	109113487	.	C	.	.	LowGQX	.	GT	./.
chr2	109113488	.	A	.	.	LowGQX	END=109113498;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	109113499	.	A	.	.	LowGQX	.	GT	./.
chr2	109113500	.	G	.	.	LowGQX	END=109113503;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	109113504	.	A	.	.	LowGQX	.	GT	./.
chr2	109113505	.	C	.	.	LowGQX	END=109113515;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:47
chr2	109113516	.	T	.	.	LowGQX	END=109113567	GT	./.
chr2	109115936	.	T	.	.	LowGQX	END=109116275	GT	./.
chr2	109124002	.	T	.	.	LowGQX	END=109124013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109124014	.	A	.	.	LowGQX	.	GT	./.
chr2	109124015	.	G	.	.	LowGQX	END=109124016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109124017	.	T	.	.	LowGQX	.	GT	./.
chr2	109124018	.	G	.	.	LowGQX	END=109124024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109124025	.	A	.	.	LowGQX	END=109124101	GT	./.
chr2	109150925	.	C	.	.	LowGQX	END=109151084	GT	./.
chr2	109223658	.	T	.	.	LowGQX	END=109223673	GT	./.
chr2	109223674	.	G	.	.	LowGQX	END=109223715;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	109223716	.	G	.	.	LowGQX	.	GT	./.
chr2	109223717	.	T	.	.	LowGQX	END=109223741;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	109223742	.	C	.	.	LowGQX	.	GT	./.
chr2	109223743	.	C	.	.	LowGQX	END=109223746;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	109223747	.	T	.	.	LowGQX	.	GT	./.
chr2	109223748	.	C	.	.	LowGQX	END=109223757;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	109237810	.	T	.	.	LowGQX	END=109237917	GT	./.
chr2	109271530	.	G	.	.	LowGQX	END=109271541;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	109271542	.	A	.	.	LowGQX	.	GT	./.
chr2	109271543	.	G	.	.	LowGQX	END=109271552;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	109271553	.	G	.	.	LowGQX	.	GT	./.
chr2	109271554	.	C	.	.	LowGQX	END=109271580;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	109271581	.	A	.	.	LowGQX	END=109271728	GT	./.
chr2	109276060	.	G	.	.	LowGQX	END=109276061	GT	./.
chr2	109276062	.	A	.	.	LowGQX	END=109276115;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:46
chr2	109276116	.	G	A	14.92	LowGQ;LowGQX	DP=2;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=46;MQ0=0;QD=7.46;SB=-39.32	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,2:2:3.01:45,3,0:46:3:1.000
chr2	109276117	.	C	.	.	LowGQX	END=109276221;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:45
chr2	109276222	.	T	.	.	LowGQX	END=109276248	GT	./.
chr2	109278641	.	C	.	.	LowGQX	END=109278740	GT	./.
chr2	109287221	.	G	.	.	LowGQX	END=109287320	GT	./.
chr2	109288738	.	G	.	.	LowGQX	END=109288872;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:39
chr2	109288873	.	G	.	.	LowGQX	.	GT	./.
chr2	109288874	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr2	109288875	.	T	.	.	LowGQX	.	GT	./.
chr2	109288876	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:40
chr2	109288877	.	T	.	.	LowGQX	.	GT	./.
chr2	109288878	.	C	.	.	LowGQX	END=109288885;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	109288886	.	T	.	.	LowGQX	.	GT	./.
chr2	109288887	.	C	.	.	LowGQX	END=109288903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:40
chr2	109289303	.	A	.	.	LowGQX;LowMQ	END=109289345	GT	./.
chr2	109289346	.	C	.	.	LowGQX	END=109289487	GT	./.
chr2	109292332	.	A	.	.	LowGQX	END=109292486	GT	./.
chr2	109292999	.	T	.	.	LowGQX	END=109293010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	109293011	.	T	.	.	LowGQX	.	GT	./.
chr2	109293012	.	A	.	.	LowGQX	END=109293016;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	109293017	.	T	.	.	LowGQX	.	GT	./.
chr2	109293018	.	A	.	.	LowGQX	END=109293021;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	109293022	.	T	.	.	LowGQX	.	GT	./.
chr2	109293023	.	A	.	.	LowGQX	END=109293129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	109293130	.	A	.	3.20	LowGQX	DP=1;MQ=25;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:0:1:0:25:0
chr2	109293131	.	T	.	.	LowGQX	END=109293136;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:25
chr2	109293137	.	G	.	.	LowGQX	.	GT	./.
chr2	109293138	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:25
chr2	109293139	.	A	.	.	LowGQX	END=109293158	GT	./.
chr2	109294410	.	T	.	.	LowGQX	END=109294562	GT	./.
chr2	109297088	.	A	.	.	LowGQX	END=109297153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109297154	.	T	.	.	LowGQX	END=109297238	GT	./.
chr2	109300339	.	A	.	.	LowGQX	END=109300508	GT	./.
chr2	109336012	.	G	.	.	PASS	END=109336142;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:87:99:60
chr2	109336143	.	G	.	.	PASS	END=109336177;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	109336178	.	C	.	.	PASS	END=109336185;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:78:60
chr2	109345522	.	T	.	.	PASS	END=109345678;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:58:99:53
chr2	109345679	.	T	.	.	PASS	END=109345706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:56:99:52
chr2	109347144	.	G	.	.	PASS	END=109347274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:43
chr2	109347275	.	T	.	.	PASS	END=109347352;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:48
chr2	109347353	.	G	.	.	PASS	END=109347383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:54
chr2	109347384	.	C	.	.	PASS	END=109347392;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:53
chr2	109347727	.	A	.	.	PASS	END=109347766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:43
chr2	109347767	.	T	.	.	PASS	END=109347870;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:46
chr2	109347871	.	T	.	.	PASS	END=109347931;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:55
chr2	109347932	.	T	.	.	PASS	END=109347981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	109351937	.	A	.	.	PASS	END=109351982;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:39
chr2	109351983	.	A	.	.	PASS	END=109352058;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:38
chr2	109352059	.	T	.	.	PASS	END=109352141;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:104:99:44
chr2	109352142	.	A	.	.	PASS	END=109352169;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:55
chr2	109352170	.	T	.	.	PASS	END=109352207;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:58
chr2	109352208	.	A	.	.	PASS	END=109352212;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:58
chr2	109352213	.	C	.	.	PASS	END=109352219;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:96:58
chr2	109352220	.	T	.	.	PASS	END=109352226;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:57
chr2	109352227	.	A	.	.	PASS	END=109352229;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:57
chr2	109352230	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:18:56
chr2	109352231	.	T	.	.	PASS	END=109352246;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:56
chr2	109352247	.	T	.	.	PASS	END=109352253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:42:55
chr2	109352254	.	T	.	.	PASS	END=109352257;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:55
chr2	109352258	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:18:55
chr2	109352259	.	A	.	.	PASS	END=109352266;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:54:55
chr2	109352267	.	T	.	.	PASS	END=109352268;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:55
chr2	109352269	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:19:12:55
chr2	109352509	.	T	.	.	PASS	END=109352558;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:49:99:55
chr2	109352559	.	G	.	.	PASS	END=109352573;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:53
chr2	109352574	.	T	.	.	PASS	END=109352617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:54
chr2	109352618	.	A	.	.	PASS	END=109352659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:112:99:56
chr2	109352660	.	C	.	.	PASS	END=109352682;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:146:99:57
chr2	109352683	.	G	.	.	PASS	END=109352756;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:58
chr2	109356894	.	A	.	.	PASS	END=109356896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	109356897	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:13:2:60
chr2	109356898	.	A	.	.	PASS	END=109356900;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:33:60
chr2	109356901	.	G	.	.	PASS	END=109356903;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:54:60
chr2	109356904	.	C	.	.	PASS	END=109356925;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:72:60
chr2	109356926	.	T	.	.	PASS	END=109356934;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:60
chr2	109356935	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:63:60
chr2	109356936	.	A	.	.	PASS	END=109356937;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:96:60
chr2	109356938	.	A	.	.	PASS	.	GT:DP:GQX:MQ	0/0:43:71:60
chr2	109356939	.	T	.	.	PASS	END=109356973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	109356974	.	C	.	.	PASS	END=109357076;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	109357077	.	T	.	.	PASS	END=109357093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	109357094	.	C	.	.	PASS	END=109357124;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr2	109357125	.	C	.	.	PASS	END=109357129;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:60
chr2	109357130	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:29:33:60
chr2	109357131	.	A	.	.	PASS	END=109357162;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	109357163	.	T	.	.	PASS	END=109357186;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:60
chr2	109357187	.	T	.	.	PASS	END=109357188;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:39:60
chr2	109363116	.	T	.	.	PASS	END=109363176;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:84:25
chr2	109363177	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:83:76:24
chr2	109363178	.	A	.	.	PASS	END=109363240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:93:22
chr2	109363241	.	A	.	.	PASS	END=109363253;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:72:20
chr2	109363254	.	G	.	.	LowMQ	END=109363262;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:72:19
chr2	109363263	.	A	.	.	PASS	END=109363264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:75:20
chr2	109363265	.	T	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:76:72:19
chr2	109363266	.	A	.	.	PASS	END=109363305;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:66:20
chr2	109363306	.	T	.	.	PASS	END=109363308;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:75:87:25
chr2	109365325	.	A	.	.	PASS	END=109365393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:72:99:60
chr2	109365394	.	T	.	.	PASS	END=109365462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:89:99:60
chr2	109365463	.	C	.	.	PASS	END=109365601;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:107:99:55
chr2	109365602	.	A	.	.	PASS	END=109365614;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:81:99:53
chr2	109365615	.	T	.	.	PASS	END=109365636;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:61:99:52
chr2	109367669	.	G	.	.	PASS	END=109367722;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:47
chr2	109367723	.	C	.	.	PASS	END=109367733;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:46
chr2	109367734	.	C	.	.	PASS	END=109367750;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:108:99:44
chr2	109367751	.	G	.	.	PASS	END=109367858;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:43
chr2	109367859	.	T	.	.	PASS	END=109367887;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:45
chr2	109367888	.	T	.	.	PASS	END=109367917;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:47
chr2	109367918	.	A	.	.	PASS	END=109368010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:113:99:45
chr2	109368011	.	A	.	.	PASS	END=109368081;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:36
chr2	109368082	.	T	.	.	PASS	END=109368131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:31
chr2	109368132	.	T	.	.	PASS	END=109368151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:33
chr2	109368152	.	A	.	.	PASS	END=109368210;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:96:35
chr2	109368276	.	C	.	.	PASS	END=109368408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:74:99:59
chr2	109368409	.	C	.	.	PASS	END=109368420;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:55:99:59
chr2	109368421	.	G	.	.	PASS	END=109368424;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:92:59
chr2	109368425	.	A	.	.	PASS	END=109368426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:81:59
chr2	109368427	.	T	.	.	PASS	END=109368437;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	109368438	.	C	.	.	PASS	END=109368441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:48:60
chr2	109368442	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:21:9:60
chr2	109368443	.	A	.	.	PASS	END=109368469;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:20:42:60
chr2	109368470	.	C	.	.	PASS	END=109368482;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:59
chr2	109368483	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:26:24:59
chr2	109368484	.	A	.	.	PASS	END=109368491;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:54:59
chr2	109369403	.	T	.	.	PASS	END=109369418;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:45
chr2	109369419	.	C	.	.	PASS	END=109369460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:116:99:34
chr2	109369461	.	G	.	.	PASS	END=109369495;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:27
chr2	109369496	.	G	.	.	PASS	END=109369540;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:27
chr2	109369541	.	A	.	.	PASS	END=109369593;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:213:99:29
chr2	109369594	.	T	.	.	PASS	END=109369634;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:156:99:34
chr2	109369635	.	A	.	.	PASS	END=109369666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:40
chr2	109369831	.	T	.	.	PASS	END=109369871;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:41
chr2	109369872	.	G	.	.	PASS	END=109369888;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:170:99:40
chr2	109369889	.	A	.	.	PASS	END=109370010;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:191:99:39
chr2	109370011	.	C	.	.	PASS	END=109370033;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:51
chr2	109370034	.	T	.	.	PASS	END=109370070;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:56
chr2	109370230	.	A	.	.	PASS	END=109370274;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:59
chr2	109370275	.	G	.	.	PASS	END=109370362;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:62:99:58
chr2	109370363	.	A	.	.	PASS	END=109370383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:58
chr2	109370384	.	A	.	.	PASS	END=109370404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:56
chr2	109370405	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:58:56
chr2	109370406	.	A	.	.	PASS	END=109370419;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:84:55
chr2	109370420	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:38:63:55
chr2	109370421	.	C	.	.	PASS	END=109370430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:81:54
chr2	109370431	.	A	.	.	PASS	END=109370439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:33:72:54
chr2	109370440	.	T	.	.	PASS	END=109370441;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:34:63:55
chr2	109370442	.	G	.	.	PASS	END=109370453;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:29:72:54
chr2	109370454	.	T	.	.	PASS	END=109370455;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:48:53
chr2	109370456	.	C	.	.	PASS	END=109370460;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:51
chr2	109370461	.	T	.	.	PASS	END=109370464;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:48:51
chr2	109370465	.	A	.	.	PASS	END=109370474;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:45:51
chr2	109370475	.	T	.	.	PASS	END=109370478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:53
chr2	109371310	.	T	.	.	PASS	END=109371328;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:30:56
chr2	109371329	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:12:27:56
chr2	109371330	.	A	.	.	PASS	END=109371346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:53
chr2	109371347	.	T	.	.	PASS	END=109371349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:52
chr2	109371350	.	T	.	.	PASS	END=109371367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:42:51
chr2	109371368	.	T	.	.	PASS	END=109371379;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:57:52
chr2	109371380	.	C	.	.	PASS	END=109371381;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:84:53
chr2	109371382	.	G	.	.	PASS	.	GT:DP:GQX:MQ	0/0:36:36:54
chr2	109371383	.	T	.	.	PASS	END=109371395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:75:52
chr2	109371396	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:40:64:52
chr2	109371397	.	A	.	.	PASS	END=109371408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:84:49
chr2	109371409	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:47:72:49
chr2	109371410	.	A	.	.	PASS	END=109371426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:48
chr2	109371427	.	A	.	.	PASS	END=109371461;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:63:99:47
chr2	109371462	.	G	.	.	PASS	END=109371497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:47
chr2	109371498	.	G	.	.	PASS	END=109371596;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:51
chr2	109371597	.	T	.	.	PASS	END=109371647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:79:99:58
chr2	109371648	.	C	.	.	PASS	END=109371676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	109371677	.	T	.	.	PASS	END=109371729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:58
chr2	109371730	.	T	.	.	PASS	END=109371766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:58
chr2	109374818	.	C	.	.	PASS	END=109374891;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:84:59
chr2	109374892	.	A	.	.	PASS	END=109374956;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:64:99:58
chr2	109374957	.	C	.	.	PASS	END=109374981;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:56
chr2	109374982	.	A	.	.	PASS	END=109375005;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:87:54
chr2	109375006	.	T	.	.	PASS	END=109375025;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:32:69:53
chr2	109375026	.	C	.	.	PASS	END=109375041;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:49
chr2	109375042	.	A	.	.	PASS	END=109375048;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:47
chr2	109375049	.	T	.	.	PASS	END=109375053;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:16:39:44
chr2	109375054	.	C	.	.	PASS	END=109375055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:36:42
chr2	109378506	.	T	.	.	PASS	END=109378514;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:57
chr2	109378515	.	G	.	.	PASS	END=109378569;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:51
chr2	109378570	.	C	.	.	PASS	END=109378578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:46
chr2	109378579	.	A	.	.	PASS	END=109378617;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:39
chr2	109378618	.	T	.	.	PASS	END=109378648;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:144:99:30
chr2	109378649	.	A	.	.	PASS	END=109378665;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:131:86:25
chr2	109378666	.	A	.	.	PASS	END=109378672;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:75:20
chr2	109378673	.	C	.	.	PASS	END=109378674;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:69:20
chr2	109378675	.	T	.	.	PASS	END=109378676;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:129:84:20
chr2	109378677	.	T	.	.	PASS	.	GT:DP:GQX:MQ	0/0:129:63:20
chr2	109378678	.	A	.	.	PASS	END=109378679;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:128:66:20
chr2	109378680	.	A	.	.	PASS	END=109378684;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:84:20
chr2	109378685	.	T	.	.	LowMQ	END=109378721;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:72:18
chr2	109378722	.	T	.	.	LowMQ	END=109378723;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:117:66:18
chr2	109379642	.	T	.	.	PASS	END=109379651;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:21:51:60
chr2	109379652	.	T	.	.	PASS	END=109379657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:57:60
chr2	109379658	.	C	.	.	PASS	END=109379663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:51:60
chr2	109379664	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:26:60
chr2	109379665	.	C	.	.	PASS	END=109379669;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr2	109379670	.	T	.	.	PASS	END=109379694;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:60:60
chr2	109379695	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:25:24:60
chr2	109379696	.	C	.	.	PASS	END=109379698;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:63:60
chr2	109379699	.	G	.	.	PASS	END=109379706;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:99:60
chr2	109379707	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:72:60
chr2	109379708	.	A	.	.	PASS	END=109379730;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:86:60
chr2	109379731	.	G	.	.	PASS	END=109379744;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	109379745	.	A	.	.	PASS	END=109379754;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	109379755	.	G	.	.	PASS	END=109379767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	109379768	.	C	.	.	PASS	END=109379786;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60
chr2	109379787	.	C	.	.	PASS	END=109379806;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:185:99:60
chr2	109379807	.	A	.	.	PASS	END=109379837;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr2	109379838	.	C	.	.	PASS	END=109379918;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:336:99:60
chr2	109379919	.	T	.	.	PASS	END=109380054;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:371:99:60
chr2	109380055	.	A	.	.	PASS	END=109380143;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:294:99:60
chr2	109380144	.	A	.	.	PASS	END=109380165;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:226:99:60
chr2	109380166	.	T	.	.	PASS	END=109380183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:167:99:60
chr2	109380184	.	T	.	.	PASS	END=109380215;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	109380216	.	A	.	.	PASS	END=109380242;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:94:99:60
chr2	109380243	.	G	.	.	PASS	END=109380321;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	109380322	.	T	.	.	PASS	END=109380393;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:93:99:60
chr2	109380394	.	T	.	.	PASS	END=109380463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:80:99:60
chr2	109380464	.	G	.	.	PASS	END=109380500;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	109380501	.	G	.	.	PASS	END=109380517;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:148:99:60
chr2	109380518	.	G	.	.	PASS	END=109380598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:195:99:60
chr2	109380599	.	T	.	.	PASS	END=109380796;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:232:99:60
chr2	109380797	.	G	.	.	PASS	END=109380880;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:257:99:60
chr2	109380881	.	T	.	.	PASS	END=109380946;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr2	109380947	.	C	.	.	PASS	END=109381052;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:180:99:60
chr2	109381053	.	G	.	.	PASS	END=109381145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:60
chr2	109381146	.	A	.	.	PASS	END=109381260;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:275:99:60
chr2	109381261	.	T	.	.	PASS	END=109381386;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:60
chr2	109381387	.	T	.	.	PASS	END=109381454;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:296:99:59
chr2	109381455	.	C	.	.	PASS	END=109381485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:259:99:60
chr2	109381486	.	A	.	.	PASS	END=109381645;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:307:99:58
chr2	109381646	.	T	.	.	PASS	END=109381719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:243:99:58
chr2	109381720	.	T	.	.	PASS	END=109381726;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:309:99:59
chr2	109381727	.	G	.	466.45	PASS	DP=323;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:257:323:99:59:99
chr2	109381728	.	T	.	.	PASS	END=109381732;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:327:99:59
chr2	109381733	.	G	.	294.68	PASS	DP=331;MQ=59;MQ0=0	GT:AD:DP:GQ:MQ:GQX	0/0:255:331:99:59:99
chr2	109381734	.	C	.	.	PASS	END=109381805;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:333:99:46
chr2	109381806	.	C	.	.	PASS	END=109381815;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:414:99:41
chr2	109381816	.	G	A	243.28	LowQD;SB	BaseQRankSum=-2.091;DP=471;Dels=0.00;FS=9.452;HRun=1;HaplotypeScore=90.7657;MQ=41;MQ0=81;MQRankSum=0.385;QD=0.52;ReadPosRankSum=-3.437;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	0/1:367,49:471:99:273,0,3555:41:99:0.118
chr2	109381817	.	G	.	.	PASS	END=109381839;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:441:99:31
chr2	109381840	.	C	.	.	PASS	END=109381866;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:396:99:24
chr2	109381867	.	C	.	.	PASS	END=109381873;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:396:99:20
chr2	109381874	.	A	.	.	LowMQ	END=109381993;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:303:99:15
chr2	109381994	.	G	.	.	LowMQ	END=109382031;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:372:93:11
chr2	109382032	.	A	.	.	LowMQ	END=109382035;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:415:72:10
chr2	109382036	.	A	.	.	LowMQ	.	GT:DP:GQX:MQ	0/0:407:63:10
chr2	109382037	.	G	.	.	LowMQ	END=109382097;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:436:99:11
chr2	109382098	.	T	.	.	LowMQ	END=109382123;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:436:99:15
chr2	109382124	.	G	.	.	PASS	END=109382151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:481:99:20
chr2	109382152	.	A	.	.	PASS	END=109382173;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:413:99:27
chr2	109382174	.	C	.	.	PASS	END=109382199;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:372:99:36
chr2	109382200	.	A	.	.	PASS	END=109382300;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:323:99:47
chr2	109382301	.	A	.	.	PASS	END=109382443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:360:99:60
chr2	109382444	.	G	.	.	PASS	END=109382505;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:277:99:60
chr2	109382506	.	G	.	.	PASS	END=109382564;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:212:99:60
chr2	109382565	.	A	.	.	PASS	END=109382604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:151:99:59
chr2	109382605	.	T	.	.	PASS	END=109382766;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:150:99:55
chr2	109382767	.	T	.	.	PASS	END=109382861;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:124:99:50
chr2	109382862	.	G	.	.	PASS	END=109382949;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:48
chr2	109382950	.	A	.	.	PASS	END=109383000;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:147:99:48
chr2	109383001	.	C	.	.	PASS	END=109383288;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:51
chr2	109383289	.	C	.	.	PASS	END=109383330;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:221:99:58
chr2	109383331	.	C	.	.	PASS	END=109383439;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:288:99:45
chr2	109383440	.	A	.	.	PASS	END=109383463;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:297:99:34
chr2	109383464	.	C	.	.	PASS	END=109383524;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:306:99:26
chr2	109383525	.	T	.	.	PASS	END=109383604;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:384:99:26
chr2	109383605	.	G	.	.	PASS	END=109383656;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:414:99:33
chr2	109383657	.	C	.	.	PASS	END=109383711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:438:99:43
chr2	109383712	.	T	.	.	PASS	END=109383869;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:561:99:46
chr2	109383870	.	G	.	.	PASS	END=109384018;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:441:99:38
chr2	109384019	.	T	.	.	PASS	END=109384114;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:336:99:41
chr2	109384115	.	A	.	.	PASS	END=109384258;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:253:99:41
chr2	109384259	.	C	.	.	PASS	END=109384312;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:254:99:31
chr2	109384313	.	A	.	.	PASS	END=109384384;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:240:99:29
chr2	109384385	.	T	.	.	PASS	END=109384430;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:230:99:36
chr2	109384431	.	G	.	.	PASS	END=109384485;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:236:99:47
chr2	109384486	.	G	.	.	PASS	END=109384605;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:274:99:57
chr2	109384606	.	C	.	.	PASS	END=109384659;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:228:99:54
chr2	109384660	.	T	.	.	PASS	END=109384695;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:178:99:49
chr2	109384696	.	A	.	.	PASS	END=109384852;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:138:99:47
chr2	109384853	.	T	.	.	PASS	END=109384895;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:106:99:59
chr2	109388106	.	C	.	.	PASS	END=109388112;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:57:59
chr2	109388113	.	A	.	.	PASS	END=109388131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:81:59
chr2	109388132	.	T	.	.	PASS	END=109388153;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:37:93:59
chr2	109388154	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:46:69:59
chr2	109388155	.	A	.	.	PASS	END=109388191;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:46:99:59
chr2	109388192	.	G	.	.	PASS	END=109388216;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:99:60
chr2	109388217	.	A	.	.	PASS	END=109388366;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:71:99:60
chr2	109388367	.	A	.	.	PASS	END=109388378;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:60:99:60
chr2	109388894	.	G	.	.	PASS	END=109388896;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:38:93:60
chr2	109388897	.	A	.	.	PASS	END=109388898;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:66:60
chr2	109388899	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:39:96:60
chr2	109388900	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:44:63:60
chr2	109388901	.	C	.	.	PASS	END=109388987;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:93:60
chr2	109388988	.	A	.	.	PASS	END=109389055;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	109389056	.	A	.	.	PASS	END=109389088;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:47:87:60
chr2	109389273	.	G	.	.	PASS	END=109389298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:125:99:60
chr2	109389299	.	T	.	.	PASS	END=109389415;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	109389416	.	T	.	.	PASS	END=109389426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:157:99:60
chr2	109389427	.	C	.	.	PASS	END=109389459;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:168:99:60
chr2	109389460	.	G	.	.	PASS	END=109389462;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:162:99:60
chr2	109389463	.	G	A	5300.04	PASS	DP=162;Dels=0.00;FS=0.000;HRun=1;HaplotypeScore=11.4158;MQ=60;MQ0=0;QD=32.72;SB=-2445.47	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,162:162:99:5300,406,0:60:99:1.000
chr2	109389464	.	G	.	.	PASS	END=109389497;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:163:99:60
chr2	109389498	.	C	.	.	PASS	END=109389553;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:189:99:60
chr2	109392137	.	T	.	.	PASS	END=109392160;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:45:60
chr2	109392161	.	T	.	.	PASS	END=109392193;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:54:60
chr2	109392194	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:27:27:60
chr2	109392195	.	A	.	.	PASS	END=109392211;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:63:60
chr2	109392212	.	A	.	.	PASS	END=109392224;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:31:75:60
chr2	109392225	.	G	.	.	PASS	END=109392228;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:48:99:60
chr2	109392229	.	A	.	.	PASS	END=109392265;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:67:99:60
chr2	109392266	.	T	.	.	PASS	END=109392374;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:84:99:60
chr2	109392375	.	C	.	.	PASS	END=109392383;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:57:99:60
chr2	109392384	.	C	.	.	PASS	END=109392400;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:44:99:60
chr2	109392401	.	T	.	.	PASS	END=109392426;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:99:60
chr2	109392427	.	A	.	.	PASS	END=109392431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:78:60
chr2	109392432	.	A	.	.	PASS	END=109392443;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:54:60
chr2	109393535	.	T	.	.	PASS	END=109393578;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:161:99:60
chr2	109393579	.	T	.	.	PASS	END=109393622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:210:99:60
chr2	109393623	.	C	.	.	PASS	END=109393663;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:227:99:60
chr2	109393664	.	G	.	.	PASS	END=109393727;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:177:99:60
chr2	109393728	.	A	.	.	PASS	END=109393738;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:145:99:60
chr2	109397674	.	A	.	.	PASS	END=109397729;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:105:99:60
chr2	109397730	.	A	.	.	PASS	END=109397763;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:137:99:60
chr2	109397764	.	T	.	.	PASS	END=109397818;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:149:99:60
chr2	109397819	.	T	.	.	PASS	END=109397922;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:165:99:60
chr2	109397923	.	T	.	.	PASS	END=109397936;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:153:99:60
chr2	109398533	.	T	.	.	PASS	END=109398548;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	109398549	.	C	.	.	PASS	END=109398642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	109398643	.	T	.	.	PASS	END=109398666;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	109398667	.	T	.	.	PASS	END=109398683;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:166:99:60
chr2	109398684	.	G	.	.	PASS	END=109398767;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:242:99:60
chr2	109398768	.	G	.	.	PASS	END=109398836;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:267:99:60
chr2	109398837	.	G	.	.	PASS	END=109398908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:219:99:60
chr2	109398933	.	A	.	.	PASS	END=109398973;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:155:99:60
chr2	109398974	.	T	.	.	PASS	END=109399013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:126:99:60
chr2	109399014	.	T	.	.	PASS	END=109399093;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:115:99:60
chr2	109399094	.	A	.	.	PASS	END=109399145;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:134:99:60
chr2	109399146	.	T	.	.	PASS	END=109399183;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	109399184	.	C	.	.	PASS	END=109399244;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	109399245	.	T	.	.	PASS	END=109399251;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	109399252	.	T	.	.	PASS	END=109399264;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:81:60
chr2	109399265	.	T	.	.	PASS	END=109399298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:72:60
chr2	109399299	.	T	.	.	PASS	END=109399333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:22:63:60
chr2	109399334	.	T	.	.	PASS	END=109399343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:51:60
chr2	109399344	.	A	.	.	PASS	END=109399349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:15:45:60
chr2	109399350	.	G	.	.	PASS	END=109399359;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:14:39:60
chr2	109399360	.	A	.	.	LowGQX	END=109399364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:21:60
chr2	109399365	.	A	.	.	LowGQX	END=109399369;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:7:18:60
chr2	109400001	.	C	.	.	PASS	END=109400011;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:54:60
chr2	109400012	.	A	.	.	PASS	END=109400013;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:48:60
chr2	109400014	.	A	.	.	PASS	END=109400024;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:24:66:60
chr2	109400025	.	C	.	.	PASS	END=109400028;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:54:60
chr2	109400029	.	T	.	.	PASS	END=109400056;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:25:57:60
chr2	109400057	.	A	.	.	PASS	END=109400079;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:30:72:60
chr2	109400080	.	C	.	.	PASS	END=109400103;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:40:87:60
chr2	109400104	.	A	.	.	PASS	END=109400131;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:51:99:60
chr2	109400132	.	G	.	.	PASS	END=109400151;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	109400152	.	T	.	.	PASS	END=109400240;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:82:99:60
chr2	109400241	.	G	.	.	PASS	END=109400275;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:73:99:60
chr2	109400276	.	T	.	.	PASS	END=109400298;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:52:99:60
chr2	109400299	.	G	.	.	PASS	END=109400304;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:99:60
chr2	109400305	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:57:60
chr2	109400306	.	C	.	.	PASS	END=109400335;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:75:60
chr2	109400336	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:28:42:60
chr2	109400337	.	A	.	.	PASS	END=109400349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:26:66:60
chr2	109400350	.	A	.	.	PASS	END=109400364;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:51:60
chr2	109400365	.	G	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:18:15:60
chr2	109400366	.	T	.	.	PASS	END=109400395;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:18:48:60
chr2	109400396	.	A	.	.	PASS	END=109400397;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:12:33:60
chr2	109400398	.	T	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:11:24:60
chr2	109400399	.	T	.	.	PASS	END=109400402;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	109400403	.	T	.	.	LowGQX	END=109400404;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:27:60
chr2	109400405	.	G	.	.	PASS	END=109400408;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:11:30:60
chr2	109403216	.	C	.	.	LowGQX	END=109403426	GT	./.
chr2	109404416	.	T	.	.	LowGQX	END=109404566	GT	./.
chr2	109405306	.	A	.	.	LowGQX	END=109405424	GT	./.
chr2	109407921	.	T	.	.	LowGQX	END=109408083	GT	./.
chr2	109408089	.	A	.	.	LowGQX	END=109408260	GT	./.
chr2	109410994	.	A	.	.	LowGQX	END=109411193	GT	./.
chr2	109414882	.	A	.	.	LowGQX	END=109414905	GT	./.
chr2	109414906	.	A	.	.	LowGQX	END=109414910;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109414911	.	G	.	.	LowGQX	.	GT	./.
chr2	109414912	.	C	.	.	LowGQX	END=109414924;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109414925	.	A	.	.	LowGQX	.	GT	./.
chr2	109414926	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109414927	.	A	.	.	LowGQX	.	GT	./.
chr2	109414928	.	G	.	.	LowGQX	END=109414942;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109414943	.	A	.	.	LowGQX	.	GT	./.
chr2	109414944	.	C	.	.	LowGQX	END=109414952;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109414953	.	G	.	.	LowGQX	.	GT	./.
chr2	109414954	.	A	.	.	LowGQX	END=109414975;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109414976	.	A	.	.	LowGQX	.	GT	./.
chr2	109414977	.	A	.	.	LowGQX	END=109415014;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109415015	.	T	.	.	LowGQX	.	GT	./.
chr2	109415016	.	C	.	.	LowGQX	END=109415044;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109421343	.	A	.	.	LowGQX	END=109421466;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109429076	.	C	.	.	LowGQX	END=109429175	GT	./.
chr2	109429274	.	A	.	.	LowGQX	END=109429385	GT	./.
chr2	109432395	.	A	.	.	LowGQX	END=109432563	GT	./.
chr2	109455639	.	A	.	.	LowGQX	END=109455759	GT	./.
chr2	109463182	.	T	.	.	LowGQX	END=109463388	GT	./.
chr2	109473228	.	A	.	.	LowGQX	END=109473333;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109473334	.	C	.	.	LowGQX	END=109473428	GT	./.
chr2	109489905	.	A	.	.	LowGQX	END=109490047	GT	./.
chr2	109492542	.	A	.	.	LowGQX	END=109492595	GT	./.
chr2	109492596	.	A	.	.	LowGQX	END=109492598;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109492599	.	C	.	.	LowGQX	.	GT	./.
chr2	109492600	.	A	.	.	LowGQX	END=109492603;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109492604	.	G	.	.	LowGQX	.	GT	./.
chr2	109492605	.	A	.	.	LowGQX	END=109492613;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109492614	.	C	.	.	LowGQX	.	GT	./.
chr2	109492615	.	C	.	.	LowGQX	END=109492622;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109492623	.	G	.	.	LowGQX	.	GT	./.
chr2	109492624	.	C	.	.	LowGQX	END=109492657;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109492658	.	C	.	.	LowGQX	.	GT	./.
chr2	109492659	.	A	.	.	LowGQX	END=109492661;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:1:3:60
chr2	109492662	.	C	.	.	LowGQX	.	GT	./.
chr2	109492663	.	T	.	.	LowGQX	END=109492664;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	109492665	.	G	.	.	LowGQX	.	GT	./.
chr2	109492666	.	G	.	.	LowGQX	END=109492711;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:2:3:60
chr2	109513312	.	C	.	.	PASS	END=109513320;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr2	109513321	.	C	A	589.66	SB	DP=19;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=0.0000;MQ=60;MQ0=0;QD=31.03;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,19:19:48.16:623,48,0:60:48:1.000
chr2	109513322	.	T	.	.	PASS	END=109513341;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:19:51:60
chr2	109513342	.	G	.	.	PASS	END=109513343;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:60:60
chr2	109513344	.	C	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:23:27:60
chr2	109513345	.	A	.	.	PASS	END=109513349;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:23:63:60
chr2	109513350	.	A	.	.	PASS	END=109513355;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:57:60
chr2	109513356	.	A	.	.	PASS	END=109513360;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:27:66:60
chr2	109513361	.	T	.	.	PASS	END=109513367;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:36:72:60
chr2	109513368	.	A	.	.	PASS	END=109513399;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:42:87:60
chr2	109513400	.	A	.	.	PASS	END=109513416;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:59:96:60
chr2	109513417	.	T	.	.	PASS	END=109513431;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:77:99:60
chr2	109513432	.	G	.	.	PASS	END=109513478;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:100:99:60
chr2	109513479	.	G	.	.	PASS	END=109513561;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:122:99:60
chr2	109513562	.	A	.	.	PASS	END=109513621;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	109513622	.	G	.	.	PASS	END=109513627;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:76:99:60
chr2	109513628	.	C	.	.	PASS	END=109513642;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:99:60
chr2	109513643	.	G	.	.	PASS	END=109513647;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:43:99:60
chr2	109513648	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:42:75:60
chr2	109513649	.	T	.	.	PASS	END=109513653;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:39:99:60
chr2	109513654	.	G	A	1369.58	SB	DP=37;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=1.8938;MQ=60;MQ0=0;QD=37.02;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,37:37:99:1403,108,0:60:99:1.000
chr2	109513655	.	C	.	.	PASS	END=109513685;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:35:90:60
chr2	109513686	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:33:60:60
chr2	109513687	.	T	.	.	PASS	END=109513691;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:28:78:60
chr2	109513692	.	A	.	.	PASS	END=109513713;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:17:45:60
chr2	109513714	.	G	.	.	PASS	END=109513735;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:13:36:60
chr2	109513736	.	A	.	.	LowGQX	.	GT:DP:GQX:MQ	0/0:9:21:60
chr2	109522713	.	T	.	.	PASS	END=109522719;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:50:90:60
chr2	109522720	.	G	A	1717.65	SB	DP=53;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;QD=32.41;SB=-0.01	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,53:53:99:1751,138,0:60:99:1.000
chr2	109522721	.	G	.	.	PASS	END=109522728;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:53:99:60
chr2	109522729	.	G	.	.	PASS	END=109522764;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:69:99:60
chr2	109522765	.	T	.	.	PASS	END=109522777;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:95:99:60
chr2	109522778	.	C	.	.	PASS	END=109522790;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:123:99:60
chr2	109522791	.	A	.	.	PASS	END=109522875;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:160:99:60
chr2	109524265	.	T	.	.	PASS	END=109524276;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:65:99:60
chr2	109524277	.	A	.	.	PASS	END=109524291;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:85:99:60
chr2	109524292	.	T	.	.	PASS	END=109524346;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:111:99:60
chr2	109524347	.	T	.	.	PASS	END=109524449;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:141:99:60
chr2	109524450	.	C	.	.	PASS	END=109524493;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:109:99:60
chr2	109524494	.	T	.	.	PASS	END=109524509;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:83:99:60
chr2	109524510	.	C	.	.	PASS	END=109524525;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:66:99:60
chr2	109524526	.	C	.	.	PASS	.	GT:DP:GQX:MQ	0/0:62:99:60
chr2	109526865	.	C	.	.	PASS	END=109526894;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:68:99:60
chr2	109526895	.	G	.	.	PASS	END=109526908;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:90:99:60
chr2	109526909	.	C	.	.	PASS	END=109526968;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:121:99:60
chr2	109526969	.	G	A	4121.84	PASS	DP=147;Dels=0.00;FS=0.000;HRun=0;HaplotypeScore=3.7877;MQ=60;MQ0=0;QD=28.04;SB=-2352.61	GT:AD:DP:GQ:PL:MQ:GQX:VF	1/1:0,147:147:99:4122,301,0:60:99:1.000
chr2	109526970	.	G	.	.	PASS	END=109527019;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:114:99:60
chr2	109527020	.	G	.	.	PASS	END=109527039;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:102:99:60
chr2	109527179	.	C	.	.	PASS	END=109527196;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:92:99:60
chr2	109527197	.	G	.	.	PASS	END=109527222;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:130:99:60
chr2	109527223	.	T	.	.	PASS	END=109527347;BLOCKAVG_min30p3a	GT:DP:GQX:MQ	0/0:139:99:60